Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 83 of 195
Found at i:15705951 original size:27 final size:27
Alignment explanation
Indices: 15705921--15705973 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
15705911 GTTGATTTAG
15705921 GCATAC-AGAGTTCATTCCCAGTCTAAA
1 GCATACGA-AGTTCATTCCCAGTCTAAA
15705948 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15705974 GATTGGACGG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
27 24 0.96
28 1 0.04
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (27 bp):
GCATACGAAGTTCATTCCCAGTCTAAA
Found at i:15706858 original size:26 final size:26
Alignment explanation
Indices: 15706822--15706874 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15706812 GTTGACTTAG
15706822 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15706848 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15706874 G
1 G
15706875 ATCGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15708201 original size:707 final size:704
Alignment explanation
Indices: 15706848--15708364 Score: 2068
Period size: 707 Copynumber: 2.1 Consensus size: 704
15706838 CCCAGTCTAA
* * *
15706848 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGTTTGTGGTAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTATGGTAGCACATGTTAGG
* * * * ** * * *
15706913 ATCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCAAGGCACCATCACCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCCTCACCAAGGCACCATCACCAGAGCATCACAGGAGA
** *
15706978 ACCTACCGGCGGCATTGCGGGTTCCGGTGATCGGGGGCGGGGGTGTGCGAACATGATGTGCGGTG
131 ACCTACCGGCGGCATTGCGGGTTCCGACGATCGGGGGCGGGGGTGTGCGAACATGATGTGCGATG
* * *
15707043 GGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAAGCTCGAGAACTCACACCCC
196 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCAC
* * * *
15707108 CTTAAAGAGTATTCGAGATTTACAGGTTTGCTGGCAGTAGCAATTAAAGTCTCTGAAATGGGGAC
261 CTTAAAAAGCATTCGAGATTTACAGGTTTGCTGCCAGTAGCAATTAAAGTCTCTGAAATGGGGAA
* * * *
15707173 ACTTTTTTCAAATGCGTCACAAAATCTTGTACACTTCGAGTTTATCTGATTTTTTTTATGCATGC
326 ACTTTTTTCAAATGCGTCACAAAATCCTGTACACTTCGAGTTTAGCTGAATTTATTTATGCATGC
* * *
15707238 CAACAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACACCTTCCGAAAATTTTTAAAA
391 CAACAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAACACCTTCCGAAAAATTTTAAAA
* *
15707303 AATCCCGACCCCAAAATTTTCAAAAATCGTGGAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
456 AATCCCGACCCAAAAATTTTCAAAAATCGTGGAAAATAGAAAACGAGTCATCTTGCCATGAAACT
15707368 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
521 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
* * **
15707433 AAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCTTATCCCGTCTC
586 AAATATGAAAATGTACCTAAACCCACCTACCACCCTATCGATCCACAGCTTACGCATCCCGTCTC
*
15707498 TCTGGCCGACGTAGT-GCCCG-CC-T-G-C-T-C-GTTTCGTCGGTTGGCTTAG
651 TCTGGCCGACGTAGTCGCCCGCCCTTCGCCTTCCTGTTTCGTCGATTGGCTTAG
* * * * *
15707544 GCATACGGAGTTCATTCCCAGTCTAAGACCGGATCAGACCGAGGGTTACGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTATGGTAGCACATGTTAGG
** *
15707609 CTCGGGCATGTGCTGGTGCCGTATTTTTCCTCACCGGGGCACCATCGCCAGAGCATCACAGGAGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCCTCACCAAGGCACCATCACCAGAGCATCACAGGAGA
* *
15707674 ACCTGACCGGCGGCATTG-GGGTTCCGACGATCGGGGGGGCCAGGGGGGTGTGTGCACATGATGT
131 ACCT-ACCGGCGGCATTGCGGGTTCCGACGATC--GGGGG-C--GGGGGTGTGCGAACATGATGT
*
15707738 TCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
190 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
15707803 CACCACCTTAAAAAGCATTTGGGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
255 CACCACCTTAAAAAGCATTCGAGA-TTTACAGGTTTGCTGCCAGTAGCAATTAAAGTCTCTGAAA
*
15707868 TGGGGAAACTTTTTTCAAATG-GTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTATT
319 TGGGGAAACTTTTTTCAAATGCGTCACAAAATCCTGTACACTTCGAG--TTTAGCTGAATTTATT
* ** * *
15707932 TGTGCATGCCAACAAAAATATGAGGATCACGTCTAAGAAGTTTGGGGCCAAAACTCCTTCCGAAA
382 TATGCATGCCAAC-AAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAACACCTTCCG-AA
* *
15707997 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTT-GAAAATCGT-GAAAATAAGAAAACGAGTCA
445 AAATTTTAAAAAATCCCG-ACC-CAAAAA-TTTTCAAAAATCGTGGAAAAT-AGAAAACGAGTCA
15708060 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
506 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * * *
15708125 GGCATTGGCATGTAGAAATGTGAAAATGTGCCTAAACCCACCTACTACCTTATCGATCCACAGCT
571 GGCATTGGCATGCAGAAATATGAAAATGTACCTAAACCCACCTACCACCCTATCGATCCACAGCT
** *
15708190 TACGCATCCCGTCTCTCTGGTTGAGGTAGTGCCCGCCCGCCCTTCCGCCCTTCCGCCCGTTTGTT
636 TACGCATCCCGTCTCTCTGGCCGACGTAGT---CGCCCGCCCTT-CG-CCTT----CC---TGTT
15708255 TCGTCGATTGGCTTAG
689 TCGTCGATTGGCTTAG
* *
15708271 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTTTGGTAGCACATGTTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTATGGTAGCACATGTTAGG
* *
15708336 CTCGGGCATGTGCTGGTGTCGTAATTTTC
66 CTCGGGCATGTGCTGGTGCCGTATTTTTC
15708365 TTTGCCGGCT
Statistics
Matches: 710, Mismatches: 76, Indels: 39
0.86 0.09 0.05
Matches are distributed among these distances:
696 126 0.18
697 13 0.02
698 5 0.01
699 1 0.00
701 122 0.17
702 57 0.08
703 25 0.04
704 42 0.06
705 19 0.03
706 9 0.01
707 172 0.24
708 4 0.01
711 5 0.01
712 2 0.00
713 1 0.00
715 1 0.00
717 1 0.00
718 1 0.00
723 1 0.00
727 103 0.15
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (704 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTATGGTAGCACATGTTAGG
CTCGGGCATGTGCTGGTGCCGTATTTTTCCTCACCAAGGCACCATCACCAGAGCATCACAGGAGA
ACCTACCGGCGGCATTGCGGGTTCCGACGATCGGGGGCGGGGGTGTGCGAACATGATGTGCGATG
GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCAC
CTTAAAAAGCATTCGAGATTTACAGGTTTGCTGCCAGTAGCAATTAAAGTCTCTGAAATGGGGAA
ACTTTTTTCAAATGCGTCACAAAATCCTGTACACTTCGAGTTTAGCTGAATTTATTTATGCATGC
CAACAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAACACCTTCCGAAAAATTTTAAAA
AATCCCGACCCAAAAATTTTCAAAAATCGTGGAAAATAGAAAACGAGTCATCTTGCCATGAAACT
TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
AAATATGAAAATGTACCTAAACCCACCTACCACCCTATCGATCCACAGCTTACGCATCCCGTCTC
TCTGGCCGACGTAGTCGCCCGCCCTTCGCCTTCCTGTTTCGTCGATTGGCTTAG
Found at i:15708443 original size:26 final size:26
Alignment explanation
Indices: 15708407--15708460 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
15708397 TGGGTTGACT
15708407 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
15708433 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
15708459 TA
1 TA
15708461 AGATTGGATC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATTCCCAGTC
Found at i:15710773 original size:872 final size:865
Alignment explanation
Indices: 15709144--15710782 Score: 2323
Period size: 870 Copynumber: 1.9 Consensus size: 865
15709134 CGTCGATTGG
* * ** * *
15709144 CTTAGGCATACGGAGTTCATTCCCAGTTTAAGATTGGACCAGACCGAGGGTTACGGCAGCACATG
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAAAGAGGGTTACAGCAGCAAATG
* * * * * * * * *
15709209 TTGGGCTTGGGCATGTGCTGGTGTCGTAATTTTCTTTGCGAGGCACCATCATCGGAGAATCGTCG
66 CTGGGCTCGAGCATGTGCTGGTGTCGCAATTTTCTTCGCGAGGCACCATCACCGAAGAATCGCCA
** *
15709274 GAGAACCTGGTCGGCGGCGTTGGGTTCCGACGATCGGGGGGCCAGGGGTGTGCACACATGATGTG
131 GAGAACCTGACCGGCGGCATTGGGTTCCGACGATCGGGGGGCCAGGGGTGTGCACACATGATGTG
* *
15709339 CGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGAAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* * *
15709404 AGCCCCTTAAAGAGCATTTTAGATTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTGAAATAG
261 ACCCCCTTAAAGAGCATTTGAGATTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTTGAAATAG
* * **
15709469 AGACATTTTTTTCAAATGGTCGCAAAATCTTGTACACTTCGAGTTTTAGCTGAATTTTATTGTGC
326 AGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTAGCTGAATTTTATTGCAC
* *
15709534 ATGCCAACAAAAATACAAGGATCACGTTTACCAAGTTTGGGGTAAAAACTCCTACCAAAAAAAGT
391 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGATAAAAACTCCTACCAAAAAAAGT
15709599 TTAAAAAATCCGAAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCC
456 TT-AAAAATCCGAAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCC
15709664 ATGAAACTTCACGTGAAGGCGTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
520 ATGAAACTTCACGTGAAGGCGTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * *
15709729 GCATGCAGAAATATGAAGCTGTGCCTAAACCCACCTACAACCCTATCGATCCACAGCTTGCGCAT
585 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACAACCCTATCAATCCACAGCTTGCACAT
* *
15709794 CCCGTCTCTCTGGCCGAAGTAGTGCCCGCCTGCCCACCCGCCCGTTCGTTTCGTCGGTTGGCCTA
650 CCCGTCTCTCTGGCCGAAGTAGTGCCCGCCTG--C-CCCGCCCGCTCGTTTCCTCGGTTGGCCTA
*
15709859 GGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGTGATACAGGATCGGCA
712 GGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGATACAGGATCGGCA
15709924 GCACGCAGAGGAGGACCCGGTCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCAC
777 GCACGCAGAGGAGGACCCGGTCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCAC
15709989 CTGCACGCTCGTTCCATGGGTTGA
842 CTGCACGCTCGTTCCATGGGTTGA
* * **
15710013 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGAAATAGGGTTACATTAGCAAATG
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAAAGAGGGTTACAGCAGCAAATG
* * *
15710078 CTGGGCTCGAGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCACCGAAGCATCGCC
66 CTGGGCTCGAGCATGTGCTGGTGTCGCAATTTTCTTCG-CGAGGCACCATCACCGAAGAATCGCC
* * *
15710143 AGAGAACTTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCAGGGGGTGTGCGCACATGAT
130 AGAGAACCTGACCGGCGGCATT-GGGTTCCGACGATCGGGGGGCCA-GGGGTGTGCACACATGAT
* *
15710208 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAGCCTCAAGAACT
193 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
*
15710273 CACACCCCCTTAATGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCAATTAAAGTGTTTG
258 CACACCCCCTTAAAGAGCATTTGAGA-TTTACAGGTTTGCTACCAGTAGCC-ATTAAAGTG-TTG
* * *
15710338 AAATGGGGACACTTTTTTCAAATGGTTACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
320 AAATAGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTAGCTGAATTTT
* * * * * *
15710403 TTTGCACATGCCAACAAAAA-CCAAGGATCATGTCTACCAAGTTT-GGATCCAAAACTTCTTCC-
384 ATTGCACATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGAT-AAAAACTCCTACCA
* * *
15710465 AAAAAA-TTT-AAAATCC-ATAACCGCTAAAAGTTTT-AAAATCGTGGAAAATA-AGAAACGGAG
448 AAAAAAGTTTAAAAATCCGA-AACCGCAAAAAGTTTTAAAAATCATGAAAAATAGA-AAAC-GAG
** *
15710525 TTGTCTTGCCATGAAACTTTCACGTGAAGGCTTAA-GGACCATTGTATGAATTTA-AAGCCATAA
510 TCATCTTGCCATGAAAC-TTCACGTGAAGGCGTAAGGGACCATTGTATGAATTTACAAGCCATAA
* *
15710588 AAATGGC-TATGGCATGTAGAAATATGAAGATGTGGCCTAAACCCACCTACCACCCTATCAATCC
574 AAATGGCAT-TGGCATGCAGAAATATGAAGATGT-GCCTAAACCCACCTACAACCCTATCAATCC
* * ** *
15710652 ACGGCTTGCCACATTCCTGGTCTCTCTGGCCGGCGTAGTGCTCGCCTG-CCCGCCCGCTCGTTTC
637 ACAGCTTG-CACA-TCC-CGTCTCTCTGGCCGAAGTAGTGCCCGCCTGCCCCGCCCGCTCGTTTC
* *
15710716 ACT-GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGGATCAGGACCAGACCGAGGGTTG
699 -CTCGGTTGGCCTAGGCATACAGAGTTCATTCCCAGTCTAA-GATCA-GACCAGACCGAGGGTTG
15710780 TGA
761 TGA
15710783 CAGGCACATG
Statistics
Matches: 678, Mismatches: 72, Indels: 37
0.86 0.09 0.05
Matches are distributed among these distances:
869 89 0.13
870 145 0.21
871 122 0.18
872 139 0.21
873 29 0.04
874 44 0.06
875 78 0.12
876 32 0.05
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (865 bp):
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAAAGAGGGTTACAGCAGCAAATG
CTGGGCTCGAGCATGTGCTGGTGTCGCAATTTTCTTCGCGAGGCACCATCACCGAAGAATCGCCA
GAGAACCTGACCGGCGGCATTGGGTTCCGACGATCGGGGGGCCAGGGGTGTGCACACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTTGAAATAG
AGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTAGCTGAATTTTATTGCAC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGATAAAAACTCCTACCAAAAAAAGT
TTAAAAATCCGAAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCA
TGAAACTTCACGTGAAGGCGTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACAACCCTATCAATCCACAGCTTGCACATC
CCGTCTCTCTGGCCGAAGTAGTGCCCGCCTGCCCCGCCCGCTCGTTTCCTCGGTTGGCCTAGGCA
TACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGATACAGGATCGGCAGCAC
GCAGAGGAGGACCCGGTCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCACCTGC
ACGCTCGTTCCATGGGTTGA
Found at i:15712571 original size:26 final size:26
Alignment explanation
Indices: 15712499--15712561 Score: 126
Period size: 26 Copynumber: 2.4 Consensus size: 26
15712489 TTTGGCATAC
15712499 GGAGTTCATTCCCTGTCTAAGCGTAT
1 GGAGTTCATTCCCTGTCTAAGCGTAT
15712525 GGAGTTCATTCCCTGTCTAAGCGTAT
1 GGAGTTCATTCCCTGTCTAAGCGTAT
15712551 GGAGTTCATTC
1 GGAGTTCATTC
15712562 TTATTCTAAG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 37 1.00
ACGTcount: A:0.19, C:0.22, G:0.24, T:0.35
Consensus pattern (26 bp):
GGAGTTCATTCCCTGTCTAAGCGTAT
Found at i:15712789 original size:13 final size:12
Alignment explanation
Indices: 15712754--15712785 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
15712744 GTGCTGGTAC
*
15712754 TTGGCCCTTATA
1 TTGGCCCCTATA
15712766 TTGGCCCCTATA
1 TTGGCCCCTATA
15712778 TTGGCCCC
1 TTGGCCCC
15712786 CTATCCCTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.12, C:0.34, G:0.19, T:0.34
Consensus pattern (12 bp):
TTGGCCCCTATA
Found at i:15713465 original size:26 final size:26
Alignment explanation
Indices: 15713429--15713481 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15713419 GTTGACTGAG
15713429 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
**
15713455 GCATACGGAGTTCATTCTTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15713481 G
1 G
15713482 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15714523 original size:902 final size:896
Alignment explanation
Indices: 15710730--15715116 Score: 5227
Period size: 936 Copynumber: 4.8 Consensus size: 896
15710720 GTTGGCTTAG
* *
15710730 GCATACGGAGTTCATTCCCAGTCTAAGGATCAGGACCAGACCGAGGGTTG-TGACAGGCACATGC
1 GCATATGGAGTTCATTCCCAGTCTAA-GATC-GGACCAGACCGAGGGTTGCAG-CA-GCACATGC
* * * * **
15710794 TGGGCTCGGGCATTGTGCTGGTGGCCT-TATTTTTTTTTCGTCGGGGCACCATCACCGGAGCATT
62 TGGGCTCAGGCA-TGTGCTGG-GG-CTGCA-TTTTTCTTCATCGGGGCACCATCGTC-GAGCA-T
** * ** * * * *
15710858 CGTCGGAGAACCTGACCGGCAACATTGAGGTTCCGGCGATCGAGGGGCCT-GGGGGTGTACGCAC
121 CACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCTGGGGGGTGTGCGCAC
*
15710922 ATGATGTGTGGTGGGTGCTGGTACTT-GCCCTTATATTTGG-CCCCTATCCCTCATCAAACCTCG
186 ATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATA-TTGGCCCCCTATCCCTCATCAAACCTCG
*
15710985 AGAACTCACGCCCCCCTTAAAGAGCATTTGAGATTTTACAGG-TTGCTTGCCAGTAGCCATTTTA
250 AGAACTCAC-ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC-TGCCAGTAGCCA--TTA
* *
15711049 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC-TGTACACTTCAAG-TTTTAT
311 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
15711112 CTG-ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC-A-TTTGGGGCCAAAAC
376 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* * * * *
15711174 ACCTACCG-AAAAATTTT-AAAAATTCTCGACCCGCAAAAAG-TTC-AAAATCGTGAAAAATAAA
441 TCCTTCCGAAAAAATTTTAAAAAATCCT-GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGA
* * * *
15711235 AAACGGAGTCGTCCTACCATGAAACTTCACATGAAGGCTTAAGGGACCTTTGTTATGAATTTACA
505 AAAC-GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG-TATGAATTTACA
* * * *
15711300 AGCCAT-AAAATGGCATCGGCATGCAGAAATATGAAAATCTGCCTAAACCGACCTACCACCCTAT
568 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* *
15711364 CGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG---CT-GAT--TTT
633 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCTCGCTCGTTT
* * *
15711423 CGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCCAGTCTAAGATCGGACCGGACCGAGGG-GTG
698 CATCGGTTGGCTTAGGCATACGGAGTTCATT-CCCAGTCTAAGATCGGACCAGACCGAGGGTGTG
* * * *
15711487 GGTACCAAGATCGACAGCAC-CAGGAGGGGGACCCGATCGATCCCCGGGCTTACGCATCCCACCC
762 GG-ACCAGGATCGACAGCACGCA-GAGGGGGACCCGACCGATCCCC-GGCTTGCGCATCCCGCCC
* * *
15711551 CTCTGGTACGGCTAAG-GCCCGCGCGCTCGTTTCATGGGTTGACTTAGG-ATAC-AGAGTTCATT
824 CTCTGG-CCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGA-AGTTCATT
*
15711613 CCTAGTCTAA
887 CCCAGTCTAA
* * * *
15711623 GCATACT-AAGTTCATTCCCAGTCTAAGATCGGACCAGACACGAGGACTATG-A-TAGCACATTC
1 GCATA-TGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC-CGAGG-GT-TGCAGCAGCACATGC
* * *
15711685 TGGGCTC-GAGCATGTG-T-CGG-TTCATATTTTTCTTCATCGGGGCACCATCGCCAGAGCATCA
62 TGGGCTCAG-GCATGTGCTGGGGCTGC--ATTTTTCTTCATCGGGGCACCATCGTC-GAGCATCA
* * ** * *
15711746 CCGGAGAACCTGACCGGCGGC-TTGGGGTTTCGATGATC-GGGGGGC-GGGGGGT-TTCGCACGT
123 CCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCTGGGGGGTGTGCGCACAT
* * * *
15711807 GATGTGTGGT-GGTGCTGGTAATTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTTGAGA
188 GATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* *
15711871 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTTCCAGTAGCCATTTAAAGTGT
253 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA-TTAAAGTGT
*
15711936 CTGAAAT-GGGACACTTTTTTCAAAT-GTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAAT
317 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
** * *
15711999 TCCTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTCAAAAATCCTTC
382 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * * * *
15712064 TTGAAAAAATTTTAAAAAATCTTGAACCGCCAAAAAGTGTTAAAAAATCATGGAAAATAGAAAAC
447 -CGAAAAAATTTTAAAAAATCCTGAACCG-CAAAAAGT-TTCAAAAATCGTGAAAAATAGAAAAC
* *
15712129 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGGATGAATTTAAAAGCCAT
509 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * ** * * *
15712194 AAAAATGGCACTGACACACAGAAATATGAAGATGTGCCAAAACCCACCAACCACCCTATCAATCC
574 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * * * *
15712259 ACAGCTTGTGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCGTCG
639 ACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCT-CGCTCGTTTCATCG
* * * * * * *
15712324 GTTGGCTTAGGCATATGGAGTTCATTCTCAGTCTAAGATCAGATCAGACTGAGGGT-TCCAGCAC
703 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTGT--GGGAC
* * * *
15712388 CAGGATC-AGCAGCACCCAAAGGGGGACCTGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
766 CAGGATCGA-CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * * * * * * *
15712452 CCTGCTGAGTGCCTGCATGCTCGTTTCATGGCTTGACTTTGGCATACGGAGTTCATTCCCTGTCT
830 CCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCT
15712517 AA
895 AA
* * *
15712519 GCGTATGGAGTTCATTCCCTGTCTAAGCGTATGGAGTTCATTCTTATTCTAAGATCAGACCGGAC
1 GCATATGGAGTTCATT--C---C----C------AG-----------TCTAAGATCGGACCAGAC
* * *
15712584 CGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTG-TCGCATTTTTCTTCATTGGG
40 CGAGGGTTGCAGCAGCACATGCTGGGCTCAGGCATGTGCTGGGGCT-GCATTTTTCTTCATCGGG
* ** *
15712648 GCACCATCGTCGAAGCATCGCCAAAGAACCTGACTGACGGCATTGGGGTTCCGGCGATCGGGGGG
104 GCACCATCGTCG-AGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGG
* ** *
15712713 GCT-GGGGGTGTGCGCACAAGATGTGCAAAGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTAT
168 GCTGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCC------T------TAT
*
15712777 ATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
221 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* * *
15712842 ATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGATACTTTTTTCAAATGGTGACAA
286 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* *
15712907 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATAAAAGGATCA
351 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
* * * * * *
15712972 CGACTACCAAGCTTGGGGCCACAACTCCTTCTGAAAAAATTTTAAAAAATCTTGAACCGTAAAAA
416 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAA
** * *
15713037 GTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTGCAGGTGAAGGCTTAA
481 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* ** *
15713102 GGGACCATTGTATGAATTTACAGGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTCC
546 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGC
** * *
15713167 CTAAACCCACCTACCACCCTATCGATCCATAGCTTGCGCATCTCGTCTCTCTAGCCGACGTAGTG
611 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG
* * * *
15713232 CCCGCCCGCCCGTCCGCTCGTTTCATCGGTTGGCTTAGGCATACGAAGATAATTCCCAGTCTAAG
676 CCCGCCCGCCCCT-CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
** * * * * * * *
15713297 ATCGGACTGGATCGACGGTTTCGGTAGCAGGATCGACAGCACGCAGAGAGGAACCCGACCGATCC
740 ATCGGACCAGACCGAGGGTGT-GGGACCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCC
** * ** * *
15713362 TTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGTGCGCCCGCACGCTCGTTTTGTTGGTTGACTG
804 CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTT
*
15713427 AGGCATACGGAGTTCATTCCCAGTCTAA
869 AGGCATACGAAGTTCATTCCCAGTCTAA
* ** * * *
15713455 GCATACGGAGTTCATTCTTAGTCTAAGATCAGACCAGACCGAGGATTGCGGCAGCACATGCTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCACATGCTGGG
* * * * * *
15713520 CTCGGGCATGTGCTGGTGCTTCATTTTTCTTCACCGGGGCACTATCGTCGAAGCATCATCGGAGA
66 CTCAGGCATGTGCTGGGGCTGCATTTTTCTTCATCGGGGCACCATCGTCG-AGCATCACCGGAGA
* * * *
15713585 ACCTGACCGATGGCATTAGGGTTCCGACGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTGC
130 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTGT
* *
15713650 GATGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
15713715 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
15713780 GGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
15713845 GCATGCCAA-TAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTCCGAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
*
15713909 TTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
455 TTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* * *
15713974 CCATGAAACTTTACGTGAAGGCTTAAGGGACCATTGTAGGAATTTACAAGCCATTAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
15714039 TGGCATGCAGAAATATGAAGATATGGCTAAACCCACCTACCATCCTATCGATCCACGGCTTGCAC
585 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *
15714104 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCTGCCCACTCGCTCGTTTCATCTGTTGGCT
650 ATCCCGTCTCTCTGGCCGACGTAGTGCCCG-C--CC-GCCC-CTCGCTCGTTTCATCGGTTGGCT
* * ** *
15714169 TAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGCTGTGGGAGTAGGCTCG
710 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGG-TGTGGGACCAGGATCG
* * * ** *
15714234 ATAGCACGTAGAGTGGGACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
774 ACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * *
15714299 CGCCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTTTAA
839 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * *
15714357 GCATATGGAGTTCATTCCCAGTTTAAGATCGGCCCAGACCGAGGGTTGCAGTAGCACATGCTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCACATGCTGGG
* * * *
15714422 CTCAGGCATGTGCTGGGGCTGCATTTTTCATCACCAGGGCACCATCATCAGAGCATCACCGGAGA
66 CTCAGGCATGTGCTGGGGCTGCATTTTTCTTCATCGGGGCACCATCGTC-GAGCATCACCGGAGA
** *
15714487 ACCTGACCGACGGTGTTGGGGTTCCGGCGATCGGGGGGGTCGGCGGGGGGTGTGCGCACATGATG
130 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGG-C--TGGGGGGTGTGCGCACATGATG
* * *
15714552 TGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCACACCTCGAGAACCC
192 TGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
15714617 ACACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTCTCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
15714682 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGATTTTTTAGTTGAATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
15714747 TGTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATTCTTCCGAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * ** * * *
15714811 AAATTTT-AAACATCCCGAACCATAAAAAGTTTTAAAAATCGTG-AAAATAGAAAATGAGTCATC
452 AAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
15714874 TTGCCATGCAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAACCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * *
15714939 CATTTCCATGTAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTG
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
15715004 CGCATCGCGTCTCTCTGGCCGACATAGTGCCCGCTCGCCTGCCTACCCATTCGTTTTATCGGTTG
647 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCC--CCT-CGC--TCGTTTCATCGGTTG
* * * *
15715069 GCTTAGGCACACGAAGTTTATTACCAGTCTAAGATCGGACCAGACCGA
707 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGA
15715117 TGGTTGCTGC
Statistics
Matches: 3018, Mismatches: 364, Indels: 214
0.84 0.10 0.06
Matches are distributed among these distances:
879 11 0.00
880 29 0.01
881 25 0.01
882 99 0.03
883 61 0.02
884 27 0.01
885 15 0.00
886 34 0.01
887 44 0.01
888 17 0.01
889 139 0.05
890 24 0.01
891 26 0.01
892 11 0.00
893 24 0.01
894 10 0.00
895 76 0.03
896 98 0.03
897 3 0.00
898 251 0.08
899 178 0.06
900 3 0.00
901 6 0.00
902 325 0.11
903 225 0.07
904 30 0.01
905 272 0.09
910 133 0.04
911 45 0.01
919 2 0.00
920 1 0.00
921 30 0.01
922 66 0.02
923 16 0.01
924 14 0.00
925 12 0.00
926 17 0.01
932 1 0.00
934 1 0.00
936 369 0.12
937 25 0.01
938 131 0.04
939 92 0.03
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (896 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCACATGCTGGG
CTCAGGCATGTGCTGGGGCTGCATTTTTCTTCATCGGGGCACCATCGTCGAGCATCACCGGAGAA
CCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTGTG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCTCGCTCGTTTCATCGGTTGGCTTAGGCA
TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTGTGGGACCAGGATCGACAGCAC
GCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
ACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
Found at i:15716456 original size:716 final size:715
Alignment explanation
Indices: 15714365--15717246 Score: 3786
Period size: 705 Copynumber: 4.1 Consensus size: 715
15714355 AAGCATATGG
* * *
15714365 AGTTCATTCCCAGTTTAAGATCGGCCCAGACCGAGGGTTGCAGTAGCACATGCTGGGCTC-AGGC
1 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGA-GC
* * * * * **
15714429 ATGTGCTGGGGCTGCATTTTTCATCACCAGGGCACCATCATCAGAGCATCACCGGAGAACCTGAC
65 ATGTGCTGGGGCCGTATTTTTCTTCACCGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGAC
** * * * * *
15714494 CGACGGTGTTGGGGTTCCGGCGATCGGGGGGGTCGGCGGGGGGTGTGCGCACATGATGTGTGATG
130 CGACGGCATTGGGGTTCCGACGATCGGAGGGGTCAG-AGGGGGTGTGCGCACATGATGTGCGATG
* * * *
15714559 GGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCACACCTCGAGAACCCACACCCC
194 AGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
15714624 CTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTCTCTGAAATGGGGA
259 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* *
15714689 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGATTTTTTAGTTGAATTTTTTTGTGCAT
324 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * *
15714754 GCCA-AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATTCTTCCGAAAAAATTTT
389 GCCACCAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTT
* * * *
15714818 -AAACATCCCGAACCATAAAAAGTTTTAAAAATCGTG-AAAATAGAAAATGAGTCATCTTGCCAT
454 AAAAAATCCCGAACCA-GAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
* * **
15714881 GCAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAACCCATAAAAATGGCATTTCC
518 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
** * *
15714946 ATGTAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCGCATCG
583 ATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * ** * *
15715011 CGTCTCTCTGGCCGACATAGTGCCCGCTCGCCTGCCTACCCATTCGTTTTATCGGTTGGCTTAGG
648 CGTCTCTCTGGCCGACGTAGTGCCCG--C-CC-GCCCACCCGCTCATTTCATCGGTTGGCTTAGG
*
15715076 CACACGA
709 CATACGA
* * * *
15715083 AGTTTATTACCAGTCTAAGATCGGACCAGACCGATGGTTGCTGCAGCACATGCTGGGCTCGAGCA
1 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGAGCA
** * * * *
15715148 TGTTTTGGTGCCGTATTTTTCTTCACTGGGGCACCATCGTCGAAGCATCGTCGGAGAACCTGACC
66 TGTGCTGGGGCCGTATTTTTCTTCACCGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGACC
* * * * * *
15715213 GACGACATTGGGGTTCCGACGATCGAAAGGG-CTGAGGGGGTGTGCGCACATGATGTGTGATGGG
131 GACGGCATTGGGGTTCCGACGATCGGAGGGGTCAGAGGGGGTGTGCGCACATGATGTGCGATGAG
* * ** *
15715277 TGCTAGTACTT-GCTCTTATATTGGCCCCCTATCCCGAATCAAACCTCGAGAACTCACACCCCTT
196 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * *
15715341 TAAGGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAACCATTAAAGTGTCTGAAATGGGGACA
261 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * ** * *
15715406 CTTTTTTGAAATGGTCGCAAAATCTTGTACACTTCAAGTTTTTAGCTGATTTTTTTTGTGCCTG-
326 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* *
15715470 --CC---AA-A-AA--ATCACGTCTACCAAGTTTGGGGCCAAAACTCCGTCCAAAAAAATTTTTA
391 CACCAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAA
* *
15715526 AAAATCCC-AAACAGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
456 AAAATCCCGAACCAG--AAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* * *
15715590 CAACTTCATGAGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
519 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * * *
15715655 TGCATAGATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACAGCTTGCGCATCCC
584 TACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * ** * ** ** * *
15715720 GTCTCTTTGGCCGGCGTAGTGCCCGCCCGCCCGTCGGCTTGTTTTGTCGGTTGGCATAGGCATAT
649 GTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACCCGCTCATTTCATCGGTTGGCTTAGGCATAC
*
15715785 GG
714 GA
* ** * * *
15715787 AGTTCATTCCCAGTCTAAGATCGAAGTAGACCGAGGGTTGCGGCAGCACATACTGAGCTC-AGGC
1 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGA-GC
* *
15715851 ATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGAC
65 ATGTGCTGGGGCCGTATTTTTCTTCACCGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGAC
* * *
15715916 CGGCGGCATTGGGGTTCCGACAATCGGAGGGGTC-GAGGGGGTGTGCGCACATGATGGGCGATGA
130 CGACGGCATTGGGGTTCCGACGATCGGAGGGGTCAGAGGGGGTGTGCGCACATGATGTGCGATGA
*
15715980 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCC
195 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* *
15716045 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAGTGGGGAC
260 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* *
15716110 ACTTTTTTGAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTGGCTGAATTTTTTTGTGCATG
325 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATG
* ** *
15716175 CCACCAAAAATGCAAGGATCACGTCTACCAAGTTTGGATTCCAAAACT-CTTCCTGAAAAAATTT
390 CCACCAAAAATACAAGGATCACGTCTACCAAGTTTGG-GGCCAAAACTCCTTCC-AAAAAAATTT
* * * * * * * *
15716239 TAAAAAATCTCGAACTACGAAAAGTTTCAAAAATCATGAAAATTAGAAAGCGTGTCGTCTTGCTA
453 TAAAAAATCCCGAACCA-GAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
*
15716304 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCACTGG
517 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * *
15716369 TATACAGAAATATGATGATATGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCATC
582 CATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
*
15716434 CCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACCCGCTCATTTCGTCGGTTGGCTTAGGCAT
647 CCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACCCGCTCATTTCATCGGTTGGCTTAGGCAT
15716499 ACGA
712 ACGA
* * ** *
15716503 AGTTCATTTCCAGTCTCAGATCGGACTGGACAGAGGGTTGCAGCAGCACATGCTGGGCTCGAGCA
1 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGAGCA
* *
15716568 TGTGCTGGGGTCGCT-TTTTTCTTTACCGGGGCA-C--CATC---G---C--CGGAGAACCTGAC
66 TGTGCTGGGGCCG-TATTTTTCTTCACCGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGAC
* * * *
15716621 CGACGGCATTGGGG-TCCAACGATCAGG-GGCGTCAGGGGGGGTTTGCGCACATGATGTGCGAT-
130 CGACGGCATTGGGGTTCCGACGATC-GGAGGGGTCAGAGGGGGTGTGCGCACATGATGTGCGATG
* *
15716683 AGGTGCTGGTACTTGGCCCTTATATTGGCCCCCCATCCCTCATCAAACCTCAAGAACTCACACCC
194 A-GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
*
15716748 CCTCAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
258 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * *
15716813 ACACTTTTTTCAAATGGTCACAAAATCGTGTACACTTTGAGTTTTTAGCTGAATTGTTTTATGCA
323 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCA
* * *
15716878 TGCCAACAAAAATACAAGGGTCACGTCTACCAAGTTTGGGGCCAAAACTCCCTCCAAAAAAATTT
388 TGCCACCAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTT
* * *
15716943 TAAAAAATCCTGAACCATAAAATGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
453 TAAAAAATCCCGAACCAGAAAA-GTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
* *
15717008 TGAAACTTCATGGGAAGGCTTAA-GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
517 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * *
15717072 -AAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGTGCAT
582 CATA-CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * *
15717136 CCCATCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCACCCGCTCATTTCATCGGTTGGCTTATGCA
646 CCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACCCGCTCATTTCATCGGTTGGCTTAGGCA
15717201 TACGA
711 TACGA
* * * * *
15717206 AGTTCATTCCTAGTCTAAGATCAGATCGGACCAAGGGTTGC
1 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGC
15717247 CATAGCAAGA
Statistics
Matches: 1894, Mismatches: 239, Indels: 77
0.86 0.11 0.03
Matches are distributed among these distances:
702 2 0.00
703 198 0.10
704 305 0.16
705 444 0.23
706 48 0.03
707 27 0.01
708 170 0.09
709 1 0.00
710 3 0.00
711 2 0.00
713 5 0.00
715 187 0.10
716 361 0.19
717 7 0.00
718 133 0.07
719 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (715 bp):
AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGAGCA
TGTGCTGGGGCCGTATTTTTCTTCACCGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGACC
GACGGCATTGGGGTTCCGACGATCGGAGGGGTCAGAGGGGGTGTGCGCACATGATGTGCGATGAG
TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
CTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGC
CACCAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAA
AAAATCCCGAACCAGAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATA
CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
CTCTCTGGCCGACGTAGTGCCCGCCCGCCCACCCGCTCATTTCATCGGTTGGCTTAGGCATACGA
Found at i:15718489 original size:24 final size:25
Alignment explanation
Indices: 15718441--15718495 Score: 78
Period size: 25 Copynumber: 2.3 Consensus size: 25
15718431 TGACTTAGGC
*
15718441 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
*
15718466 ATACGGAGTTCATT-GCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
15718490 AT-CGGA
1 ATACGGA
15718496 CCAGGCCGAG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
23 4 0.14
24 11 0.39
25 13 0.46
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (25 bp):
ATACGGAGTTCATTCCCAGTCTAAG
Found at i:15721300 original size:704 final size:705
Alignment explanation
Indices: 15719477--15722356 Score: 4152
Period size: 704 Copynumber: 4.1 Consensus size: 705
15719467 CCCGGTCTAA
* * * * *
15719477 GCATACGGAGTTCATT-ACAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTGCGGCAGCAGATGCTGGA
* ** *
15719541 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGAGGCACCATCACCGGAGCATCGCCAGAGA
66 CTCG-GCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * ** *
15719606 ACCTGATCGGCGGCATTGGGGTTCCGAC-AATCGGGGGGGTCGGGGGGGTGGGTGCACAAGATGT
130 ACCTGATCGGCGGCATTGGCGTTCCG-CTGATCGGGGGGGCCGGGGGGGT--GCACACATGATGT
* * * *
15719670 GCGACGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCGTCAAACCTCGAGAACTCA
192 GCGATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTACCCCTCATCAAACCTCGAGAACTCA
*
15719735 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
257 CA-CCCCTTAAAGAGCATTTGAGATTTTAAAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * * * *
15719800 TGGGGACACTTTTTTCAATTGGTCACAAAACCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTT
321 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAATTTGAGTTTTTAGCTGATCTGTTTT
* * * * *
15719865 GTGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCAAAAACACCTTCCGAAAA
386 ATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * ** *
15719930 AATTTAAAAAAATCTCGAATCGCAAAAAGTTTTGAAAATCATGAAAAATAAAAAACGAGTCGTCT
451 AATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* ** **
15719995 TGCCATGAAACTTCACGTGAAGGCTTAAGG-GACCATTGTATGAATTTGCAAGCCATAAAAATGG
516 TGCCATGAAACTTCACGTGAAGGCTT-AGGAGGCCATTGTATGAATTTAAAAAACATAAAAATGG
* * * * * * *
15720059 CATTGGCATGCAGAAATAAGAAAATGTGCCTAAACGCACCTACCACCCTATCGATCCACGACTTA
580 CATTGGCAAGCAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTG
* * * *
15720124 TGCATCCCGTCTCTCTGGCCGGCA-TAGTCTCGCCCGCTCGTCCGTCCGCTCGTTTTGTCGGTTG
645 CGCATCCCGTCTCTCTGGCCGG-AGTAG--T-G--C-CT-G-CCG-CCGCTCATTTCGTCGGTTA
15720188 GCTTAG
700 GCTTAG
* * * * * * *
15720194 GCATACGGAGTTCATTCCCTGTCTAAGATTGAATCGGACTGAGCGTTGCGACAGCAGATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTGCGGCAGCAGATGCTGGA
* * *
15720259 CTTCGACATGTGCTGGTGCTACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGG-GA
66 C-TCGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * *
15720323 ACCTGATCGGTGGTATTGGGGTTCCGATGATC--GGGGGCCGAGGGGGGTGCACACATGATGTAC
130 ACCTGATCGGCGGCATTGGCGTTCCGCTGATCGGGGGGGCCG-GGGGGGTGCACACATGATGTGC
*
15720386 GATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
194 GATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTACCCCTCATCAAACCTCGAGAACTCACA
15720451 CCCCTTAAAGAGCATTTGAGATTTTAAAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
259 CCCCTTAAAGAGCATTTGAGATTTTAAAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
15720516 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACAATTTGAGTTTTTAGCTGATCTGTTTTATG
324 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACAATTTGAGTTTTTAGCTGATCTGTTTTATG
* *
15720581 CATGCCAAAAAAAATACAAGGTTCACGTCTACTAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
389 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
**
15720646 TTTAAAAAATC-CTGAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTG
454 TTTAAAAAATCTC-GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
15720710 CCATGAAACTTCACGTGAAGGCTTAGGAGGCTATTGTATGAATTTAAAAAACATAAAAATGGCAT
518 CCATGAAACTTCACGTGAAGGCTTAGGAGGCCATTGTATGAATTTAAAAAACATAAAAATGGCAT
*
15720775 TGGCAAGCAGAAATATGAAGATGTTCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCGC
583 TGGCAAGCAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCGC
15720840 ATCCCGTCTCTCTGGCCGGAGTAGTGCCTG-C-CCGCTCATTTCGTCGGTTAGCTTAG
648 ATCCCGTCTCTCTGGCCGGAGTAGTGCCTGCCGCCGCTCATTTCGTCGGTTAGCTTAG
* *
15720896 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTGTGGCAGTAGATGCTGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTGCGGCAGCAGATGCTGGA
* *
15720961 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTC-GGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * *
15721026 ACCTGGTCGACGGCATTGGCGTTCCGCTGATCGGGGGGGTCGGGGGGGTGCACACATGATGTGCG
130 ACCTGATCGGCGGCATTGGCGTTCCGCTGATCGGGGGGGCCGGGGGGGTGCACACATGATGTGCG
*
15721091 ATGGGTGCCGGTACTTGGCCCTTATATTGGCACCCTACCCCTCATCAAACCTCGAGAACTCACAC
195 ATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTACCCCTCATCAAACCTCGAGAACTCACAC
* *
15721156 CCCTTAAAGAGCATTTGAGATTTTAAAGGTTTGCTTCCAGTAGCAATTAAAGTGTCTGAAATGGG
260 CCCTTAAAGAGCATTTGAGATTTTAAAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
15721221 GACACTTTTTTCAAATGGTCACAAAATCTTGTACAATTTGAGTTTTTAGCTGATCTGTTTTATGC
325 GACACTTTTTTCAAATGGTCACAAAATCTTGTACAATTTGAGTTTTTAGCTGATCTGTTTTATGC
*
15721286 ATGCCAAAAAAAATACAAGGTTCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
390 ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * * *
15721351 TTAAAAAATC-CTGAACCGTAAAAAGTTTCGAAAATCGTGAAGAATAGAAAACGAGTCGTCTTGC
455 TTAAAAAATCTC-GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* *
15721415 CATGAAACTTCACGTGAAGGCTTAGCAGGCTATTGTATGAATTTAAAAAACATAAAAATGGCATT
519 CATGAAACTTCACGTGAAGGCTTAGGAGGCCATTGTATGAATTTAAAAAACATAAAAATGGCATT
*
15721480 GGCAAGCAGAAATATGAAGATGTTCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCGCA
584 GGCAAGCAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCGCA
15721545 TCCCGTCTCTCTGGCCGGAGTAGTGCCTG-C-CCGCTCATTTCGTCGGTTAGCTTAG
649 TCCCGTCTCTCTGGCCGGAGTAGTGCCTGCCGCCGCTCATTTCGTCGGTTAGCTTAG
* * *
15721600 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTGTGGCAGTAGATGCTAGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTGCGGCAGCAGATGCTGGA
* *
15721665 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTC-GGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * *
15721730 ACCTGGTCGGCGGCATTGGCGTTCCGCTGATCGGGGGGGCCGGGGGGGTGCGCACATGATGTTCG
130 ACCTGATCGGCGGCATTGGCGTTCCGCTGATCGGGGGGGCCGGGGGGGTGCACACATGATGTGCG
*
15721795 ATGGGTGCCGGTACTTGGCCCTTATATTGGCGCCCTACCCCTCATCAAACCTCGAGAACTCACAC
195 ATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTACCCCTCATCAAACCTCGAGAACTCACAC
15721860 CCCTTAAAGAGCATTTGAGATTTTAAAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
260 CCCTTAAAGAGCATTTGAGATTTTAAAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * * ** * *
15721925 GACACTTTTTTCAAATGGTCACAAAGTCTTGTACACTTTGAGTTTTTAGCTAAAGTTTTTTGTGC
325 GACACTTTTTTCAAATGGTCACAAAATCTTGTACAATTTGAGTTTTTAGCTGATCTGTTTTATGC
* * *
15721990 GTGCCAACAAAAATACAAGGATCACGTCTACC-AGTTTTGGGGCCAAAACTCCTTCTGAAAAAAT
390 ATGCCAAAAAAAATACAAGGATCACGTCTACCAAG-TTTGGGGCCAAAACTCCTTCCGAAAAAAT
*** * *
15722054 TTTAAAAAATCTCGAACCATTAAAAGTTTCAAAAATCATGGAAAATAGAAAACGAGTCATCTTGC
454 TTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* * * * * **
15722119 CTTAAAACTTCACATGAAGGCTTA-AAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
519 CATGAAACTTCACGTGAAGGCTTAGGAGG-CCATTGTATGAATTTAAAAAACATAAAAATGGCAT
* * * * *
15722183 TGGCACGCAGAAATAGGAAGATGTGCCTAAACCCACCTACTACCATATCGATCCACGGCTTGCGC
583 TGGCAAGCAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCGC
* ** * * * * *
15722248 ATCCCGTCTCTTTGGTTGGCGGAGTGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAG
648 ATCCCGTCTCTCTGGCCGGAGTAGTGCCTG-CCGC-CGCTCATTTCGTCGGTTAGCTTAG
* * * * *
15722308 GCATACGAAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTGC
15722357 TGAGCAGGAT
Statistics
Matches: 1991, Mismatches: 154, Indels: 45
0.91 0.07 0.02
Matches are distributed among these distances:
701 2 0.00
702 132 0.07
703 33 0.02
704 1145 0.58
705 8 0.00
706 2 0.00
707 3 0.00
708 66 0.03
710 1 0.00
711 1 0.00
712 5 0.00
713 369 0.19
714 73 0.04
715 7 0.00
716 7 0.00
717 45 0.02
718 89 0.04
719 3 0.00
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (705 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTGCGGCAGCAGATGCTGGA
CTCGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAA
CCTGATCGGCGGCATTGGCGTTCCGCTGATCGGGGGGGCCGGGGGGGTGCACACATGATGTGCGA
TGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTACCCCTCATCAAACCTCGAGAACTCACACC
CCTTAAAGAGCATTTGAGATTTTAAAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACAATTTGAGTTTTTAGCTGATCTGTTTTATGCA
TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
TAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAGGAGGCCATTGTATGAATTTAAAAAACATAAAAATGGCATTGG
CAAGCAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCCGGAGTAGTGCCTGCCGCCGCTCATTTCGTCGGTTAGCTTAG
Found at i:15722496 original size:26 final size:26
Alignment explanation
Indices: 15722467--15722517 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
15722457 TTGACTTAGG
* *
15722467 CATACGGAGTTCATTCCTAGTCTAAC
1 CATACAGAGTTCATTCCGAGTCTAAC
*
15722493 CATACAGAGTTCATTTCGAGTCTAA
1 CATACAGAGTTCATTCCGAGTCTAA
15722518 GATCAAATCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (26 bp):
CATACAGAGTTCATTCCGAGTCTAAC
Found at i:15723686 original size:26 final size:26
Alignment explanation
Indices: 15723657--15723708 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15723647 CAAAACTCTT
*
15723657 CCGAAAAAATTTTAAAAAATCCTGAA
1 CCGAAAAAAGTTTAAAAAATCCTGAA
* *
15723683 CCGAAAAAAGTTTCAAAAATCTTGAA
1 CCGAAAAAAGTTTAAAAAATCCTGAA
15723709 AAATAGAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.52, C:0.15, G:0.10, T:0.23
Consensus pattern (26 bp):
CCGAAAAAAGTTTAAAAAATCCTGAA
Found at i:15723892 original size:719 final size:713
Alignment explanation
Indices: 15722493--15723957 Score: 1982
Period size: 719 Copynumber: 2.0 Consensus size: 713
15722483 CTAGTCTAAC
* * * * *
15722493 CATACAGAGTTCATTTCGAGTCTAAGATCAAATCAGACCGAGGGTTGCGCCAGCACATGCTGGGC
1 CATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGCCAGCACATGCTGGAC
* *** * *
15722558 TCGGGCATCTGCTGGTGCTACATTTTTCTTCGTTGGGGCACCATCGTCGAAGCATCGTCGGAGAA
66 TCGGGCATCTGCTGGTGCCACATTTTTCTTCGCCAGGGCACCATCCTCGAAGCATCGCCGGAGAA
** * * *
15722623 CCTGACCGGCGGCATTGGGGCTCAGGTGATCGAGGGGGTCGGGGAGGTGTGCGCACATGATGTGT
131 CCTGACCGGCGGCATTGGGGCTCAGACGATCGAGGGGGCCGGGGAGGTGTACGCACATGATGTGC
*
15722688 GATGGGTGCTAGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTAAGAACTCACA
196 GATGGGTGCTAGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
**
15722753 CCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
261 AACTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
15722818 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACCTCGAGTTTTTAGCCGAATGTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAAACTTGTACACCTCGAGTTTTTAGCCGAATGTTTTTAT
* *
15722883 GCATGCCAACAATAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAAATTTTTCCGAAAAAA
391 GCATGCCAACAATAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAAACTCTTCCGAAAAAA
** *
15722948 TTATAAAAAATCCCGAACCTTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
456 TTATAAAAAATCCCGAACCGAAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTG
* * **
15723013 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAGTGGCAT
521 CCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATCCCAT
* *
15723078 TGGCATGCAGAAATATGAAGATGTGCTTAAACCCACCAACCACCCTATCGATCCACAGCTTCCGC
586 TGGCAAGCAGAAATATGAAGATGTG-----ACCCACCAA-CACCCTATCAATCCACAGCTTCCGC
* **
15723143 ATCCCGTCTCTCTGGCCGACGTAGCGCCCGCCCACCCGC-CCGCTCGCTCGTTTCATCGGTTGGC
645 ATCCCGTCTCTCTGGCCGACGTAGCGCCCGCCCACCCGCTCAGC-CGCTCGTTTCATCGGTTGAA
15723207 TTAGG
709 TTAGG
* ** * *
15723212 CATACGGAGTTCATTCCCAGTTTAAGATCGGACCAGACCGAGGGTTGC-CGTAGCACATGTTGGA
1 CATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGC-CAGCACATGCTGGA
* * * * *
15723276 CTCGGGCTTGTGCTGTTGCCGCATTTTTCTTCGCCAGGGCACCATCACT-GGAGCATCGCCGGAG
65 CTCGGGCATCTGCTGGTGCCACATTTTTCTTCGCCAGGGCACCATC-CTCGAAGCATCGCCGGAG
* * * *
15723340 AACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGG-GTGTGTACGCACATGATG
129 AACCTGACCGGCGGCATTGGGGCTCAGACGATCGAGGGGGCCGGGGAG-GTGTACGCACATGATG
* * *
15723404 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
193 TGCGATGGGTGCTAGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* * *
15723469 ACAAAAC-CTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCTAGTAGCTATTAAAGTGTCTGA
258 AC-AAACTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * * *
15723533 AATGGGGACACTTTTTTCAAATGGTCACAAAAACTTGTACACTTCGAGTTTTTAGCTGATTTTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAAACTTGTACACCTCGAGTTTTTAGCCGAATGTTT
* *
15723598 TTATGCATGCCAACGAA-AATACAAGGATCGCGTCTACCAAGTTTGGGGC-CAAAACTCTTCCGA
387 TTATGCATGCCAAC-AATAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAAACTCTTCCGA
* * *
15723661 AAAAATTTTAAAAAATCCTGAACCGAAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACAAGTCG
451 AAAAATTATAAAAAATCCCGAACCGAAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCG
*
15723726 TCTTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAAT
516 TCTTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
15723791 CCCATTGGCAAGCATAAATATGAAGATGTG-CCTACC-A-A-CCTATCAATCCAC-GCTTGCGCA
581 CCCATTGGCAAGCAGAAATATGAAGATGTGACCCACCAACACCCTATCAATCCACAGCTTCCGCA
* * *
15723851 TCCCGTCTCTCTGGCCGACGTAGTGCCCACCCACCCGCCCGCCCGCCCTCTCAGCCGCTCGTTTG
646 TCCCGTCTCTCTGGCCGACGTA--G----------CGCCCGCCCACCCGCTCAGCCGCTCGTTTC
*
15723916 GTCGGTTGAATTAGG
699 ATCGGTTGAATTAGG
15723931 CATACGGAGTTCATTCCCAGTCTAAGA
1 CATACGGAGTTCATTCCCAGTCTAAGA
15723958 AGTAGACAAA
Statistics
Matches: 655, Mismatches: 73, Indels: 36
0.86 0.10 0.05
Matches are distributed among these distances:
707 30 0.05
708 12 0.02
709 2 0.00
711 1 0.00
712 5 0.01
718 160 0.24
719 437 0.67
720 8 0.01
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (713 bp):
CATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGCCAGCACATGCTGGAC
TCGGGCATCTGCTGGTGCCACATTTTTCTTCGCCAGGGCACCATCCTCGAAGCATCGCCGGAGAA
CCTGACCGGCGGCATTGGGGCTCAGACGATCGAGGGGGCCGGGGAGGTGTACGCACATGATGTGC
GATGGGTGCTAGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
AACTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAAACTTGTACACCTCGAGTTTTTAGCCGAATGTTTTTAT
GCATGCCAACAATAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAAACTCTTCCGAAAAAA
TTATAAAAAATCCCGAACCGAAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTG
CCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATCCCAT
TGGCAAGCAGAAATATGAAGATGTGACCCACCAACACCCTATCAATCCACAGCTTCCGCATCCCG
TCTCTCTGGCCGACGTAGCGCCCGCCCACCCGCTCAGCCGCTCGTTTCATCGGTTGAATTAGG
Found at i:15725920 original size:897 final size:892
Alignment explanation
Indices: 15723211--15727909 Score: 5265
Period size: 897 Copynumber: 5.2 Consensus size: 892
15723201 GTTGGCTTAG
* * ** * * *
15723211 GCATACGGAGTTCATTCCCAGTTTAAGATCGGACCAGACCGAGGGTTGCCG-TAGCACATGTTGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTG-CGACAGCACATGCTGG
* * * ** *
15723275 ACTCGGGCTTGTGCTGTTGCCGCATTTTTCTTCGCCAGGGCACCATCA-CTGGAGCATCGCCGGA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCAGGGCACCATCATC-GGAGCATCACCGGA
* *
15723339 GAACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGTGTGTACGCACATGATG
129 GAACCTGACCGGCGGCATTGGGGTT-CGGCGATCGGGGGGGCCGGGGG-GTGTACGCACATGATG
*
15723404 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
*** * * *
15723469 ACAAAACCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCTAGTAGCTATTAAAGTGTCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
15723534 ATGGGGACACTTTTTTCAAATGGTCACAAAAACTTGTACACTTCGAGTTTTTAGCTGATTTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-GTTTTT
* ** * *
15723599 TATGCATGCCAACGAAAATACAAGGATCGCGTCTACCAAGTTTGGGGCCAAAACT-CTTCCGAAA
386 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
* * * *
15723663 AAATTTTAAAAAATCCTGAACCGAAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACAAGTCGTC
451 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * **
15723728 TTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATCC
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
15723793 CATTGGCAAGCATAAATATGAAGATGTGCCT------ACC-A--A-CCTATCAATCCAC-GCTTG
581 CATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTG
**
15723847 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCACCCGCCCGCCCGCCCTCTCAGCCGCTCG
646 CGCATCCCGTCTCTCTGGCCG--GTA-T--------A-GTGCCCGCCCG--C-C-CA----CTCG
* ** * * *
15723912 TTTGGTCGGTTGAATTAGGCATACGGAGTTCATTCCCAGTCTAAGAAGTAGACAAACGATCAAGG
691 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG-A-TAGAC---CGAAC-CGA
* * *
15723977 GGGTTTGCGGCA-CAGGATC-G-AGTCACACA-AAGGGGACGTCGCGGACTTGATCCCCGGCTTG
750 GGG-TTGCGGCAGCAGGATCGGTAG-CACGCAGAGGGGGAC--C-CGG-C-CGATCCCCGGCTTG
* * * * * * *
15724038 CTCCATCCCTCCCCTCTGGCTGCCTCAGC-TCCGCACGCTCGTTTTCGTTGGG-TGAACTTAGGC
808 C-GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG-TTTC-ATGGGTTG-ACTTAGGC
*
15724101 ATTACGGGAGTTCATTCCCAGTTTAA
869 A-TAC-GGAGTTCATTCCCAGTCTAA
* * * * ** *
15724127 -CA-ATGGAGTTCATTCCC-GTCTAAGATCGGAGCCACACCGAGGGCTGCCCGACAGCACATGCT
1 GCATACGAAGTTCATTCCCAGTCTAAGATC-AAACCGGACCGAGGGTTG--CGACAGCACATGCT
* * * * * * *
15724189 -GGCTCGCGC-T-TTCGGGTTGGCCACATTTTTGTTCGTCGTGGGCACCATCGA-CGGAGCAGTC
63 GGGCTCGGGCATGTGCTGG-T-GCCGCATTTTTCTTCATC-AGGGCACCATC-ATCGGAGCA-TC
* *** **
15724250 ACCGGAAGAAAACCTAACC-GCGCGCATTGGGGTATCGGCGATTTAGCTGGCCGGGGGGCTGTAC
123 ACCGG-AG--AACCTGACCGGCG-GCATTGGGGT-TCGGCGATCGGGGGGGCCGGGGGG-TGTAC
* * *
15724314 -CACATGATGTGCAATGGGTGCTGGTACTTGG-CCTTATATTAG-CCCCTATATCCTCATCAAAA
182 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT-CCCTCATC-AAA
*
15724376 CCTTGGAGAACTCACCCCCCCTTAAAGGAGCATTTGAAGATTTTACAGGTTTGCTGGCCAGTTAG
245 CCTT-GAGAACTCACACCCCCTTAAA-GAGCATTTG-AGATTTTACAGGTTTGCT-GCCAG-TAG
*
15724441 CCAATTTAACAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTGTACACTTCG
305 CC-A-TTAA-AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
** *
15724506 AGTTTTTAGCTGAAGTTTTTTGTGCATGCCAATGAAAATTCAAGGAT-AGCGTCTACCAAGTTTG
367 AGTTTTTAGCTG-AGTTTTTTGTGCATGCCAAAAAAAATACAAGGATCA-CGTCTACCAAGTTTG
*
15724570 GGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATG
430 GGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATG
* *
15724635 AAAAATAG-AAACGAGTTGTCTTGCCATGAAACTGCACGTGAAGGCTTAAGGGACCATTGTATGA
495 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * *
15724699 ATTTACAAGCCATAAAAATGGCATTGGCAAGCAGAAATATGAAGATGTGCCTAAGCCCACCTACC
560 ATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACC
** * * *
15724764 ACCCTATCCTTCCACGGCTTGCGCAT-CCGTCTCTATGTCCGACT-TAGTGCCCGCCCGCCCGCC
625 ACCCTATCAATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG-GTATAGT----GCCCGCCCGCC
* *
15724827 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCACACC-AGACC
685 CACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-AGACCGA-ACC
* * * * ** *
15724891 AAGGGTTGCAGCAGTAGGATCGGTAGCACGCAAAGGGGGACCCGATCGATCCCCGGCTTGCTCAT
748 GAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCAT
* * ** * * *
15724956 CTCGCCCCTCTGGCTGGCTGAATGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATATGGAGT
813 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGT
15725021 TCATTCCCAGTCTAA
878 TCATTCCCAGTCTAA
* * * *
15725036 GCATACGAAGTTCACTCTCAGCCTAAGATCAAACCGGACCGAGGGTTGTGACAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * *
15725101 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCATCGGAGCATCACTGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCAGGGCACCATCATCGGAGCATCACCGGAGA
** * * *
15725166 ACCTGATTGACGGCATTGGGGTTTCGGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGAG
131 ACCTGACCGGCGGCATTGGGG-TTCGG-CGATCGGGGGGGCCGGGGGGTGTACGCACATGATGTG
** *
15725231 CGATGGGTGCTGGTACTTAACCCTTAGATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
* *
15725296 ACCCCCTTATAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
15725361 AGGGACACTTTTTTCAAATGGTCACAAATTCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTAT
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAGTTTTTTGT
* * *
15725426 GCAAGCCAAAAAAAAATACAAGGATCACGTTTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAA
389 GCATGCC-AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
* * *
15725491 ATTTTAAAAAATCCCTGAACCGCAAAAGGTTTCGAAAATCATGAAAAATAGAAAACGAGTCATCT
453 ATTTTAAAAAATCCC-GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
15725556 TGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* ** *
15725621 ATTGGCATGCAAAAATATGAAGATGTGCCTAAACCGACCTACCACTTTATCGATCCACGGCTTGC
582 ATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGC
*
15725686 GCATCCCGTCTCTCTGGCCGGTATAGTGCCCGCCCGCCCATTCGTTTCGTCGGTTGGCTTAGGCA
647 GCATCCCGTCTCTCTGGCCGGTATAGTGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCA
* * * *
15725751 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAGGGTTGCGGGAGCAGGATCGGCAACA
712 TACGGAGTTCATTCCCAGTCTAAGAT-AGACCGAACCGAGGGTTGCGGCAGCAGGATCGGTAGCA
* ** *
15725816 CGCAGAGGGGGACCGGGCCGATCCTTGGCTTGCGCATCCCGCCTCTCTGGCCGGCTGAGCGCCCG
776 CGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* * *
15725881 CACGCTTGTTTCATGGGTTGACTTATGCATACAGAGTTCATTCCCAG--T--
841 CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
15725929 G--T---AAG---------A-TC--AGAT-----CGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * * * * *
15725972 CTCAGGCATGTGCTAGTGCCGAATTTTTCTTCACCGGGGCACCATCATCGAAGCATCATCGGACA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCAGGGCACCATCATCGGAGCATCACCGGAGA
* * * *
15726037 ACCTGACCGACGGCATTAGGGCTCCGGCGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATT-GGGGTTCGGCGATCGGGGGGGCC-GGGGGGTGTACGCACATGATGTG
*
15726101 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
* * *
15726166 AACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTTCTGCTAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * ** *
15726231 GGGGACACTTTTTTCAAATGGTCACAAAAACTTGTAGACTTCAAGGCTTTAGCTTAAGTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC-TGAGTTTTTTG
* * *
15726296 TGTATGCC-AAAAAAATACAAGGATCACGTCTATCAAGTTTGGGGCCAAAGCTCC-TTCTGAAAA
388 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAAA
* * *
15726359 AATTTT-AAAAATCCCGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCT
452 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
15726423 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
15726488 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTAC
582 ATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGC
* ** * *
15726553 GCATCCCGTCTCTCTCGTTGGTGTAGTGCCCGCCCGTCCGCCTGCCCGTTCGTTTCGTCGGTTGG
647 GCATCCCGTCTCTCTGGCCGGTATAGTGCCCG--C--CCGCC--CAC--TCGTTTCGTCGGTTGG
* * * * * * *
15726618 CTTAGTCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTGCAGCAACAAGAT
704 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TAGACCGAACCGAGGGTTGCGGCAGCAGGAT
* * * * *
15726683 CGGTAGCACGTAGAGGGGGACCCAGCCGATCCCTGGCTTGCACATCCCACCCCTC-GGCCGGCTG
768 CGGTAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * ** *
15726747 AGCGCCCTCGCGCTCGTTTCATGTCTTGACTTAGGCATACGGAGTTCATTCCCAGTTTAA
833 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * *
15726807 GCATACAAAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCAACAACACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* *
15726872 CT-GGGCATGTGCTGGTG-C-CATATTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCGGAG
66 CTCGGGCATGTGCTGGTGCCGCAT-TTTTCTTCATCAGGGCACCATCATCGGAGCATCACCGGAG
* * * * * *
15726934 AACCTGACCGGCGGCATTGGAGCT-GGCGATCGGGCGGGCCAAGGGGTTGTACGCAGATGATGTG
130 AACCTGACCGGCGGCATTGGGGTTCGGCGATCGGGGGGGCC-GGGGGGTGTACGCACATGATGTG
* *
15726998 TGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTTGAGAACTCAT
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
* * * * * * * *
15727062 GCCCCCTTAAAAAGCGTGTGACATTTTACAGGTTTGCTGCCAGTAGCTACTAAAGTGTCTAAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * * * *
15727127 GGGGACACATTTTTCAAATTGTCACAAAATCTTGTAAACTTCAAGTTTTTAGTTGAAGTTTTTCG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-AGTTTTTTG
* *
15727192 TACATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTCGGGCCAAAACTCCTTTCGAAAAA
388 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
* * *
15727257 ATTTTAAAAAATCCCGAACCGTAAAAAGTTT-AAAAATCATGAAAAATGGAAAACGAGTCGTCTC
453 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
15727321 GCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
15727386 TTGGCATG-AAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCTACGGCTTGC
583 TTGGCATGCAA-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGC
* *** * *
15727450 GCATCCCGTCTCTCTGACCGACGTAGTGCCCACCCG--C-C-CGTTT-GTCAGTTGGCTTAGGCA
647 GCATCCCGTCTCTCTGGCCGGTATAGTGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCA
** * * * * * *
15727510 TACAAAGTTCATTCCCAGTCTAAGAATGGACCAAACCGAGGGTTGTGCCAGTAGGATTGGTAGCA
712 TACGGAGTTCATTCCCAGTCTAAG-ATAGACCGAACCGAGGGTTGCGGCAGCAGGATCGGTAGCA
* * * * *
15727575 CGCAGAGGGGGACCCGACTGATCCCCGGCTTGCGCATCTCGCCCCTCTGGCCTGCTGAGCGCCTG
776 CGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* * *
15727640 CACTCTCGTTTCATGGGTTGACTTAGGCATGCAGAGTTCATTCCCAGTCTAA
841 CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
15727692 GCATACGAAGTTCATTCCCAGTCGAAGATCAGATCGGACCGAGGGTTACGGCAGTAAATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * *****
15727757 CGCGGGCATGTGCTGATGCCGTATTTTTCTTCATCAGGGCACCATCGTCGGAGCATTGTAAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCAGGGCACCATCATCGGAGCATCACCGGAGA
* * * * * * *
15727822 ACCTTACCGGTGGCATTGGGGTTCCGACGATC-GAGGGGTCGGGGCGAGAGTGCGCACATGATGT
131 ACCTGACCGGCGGCATTGGGGTT-CGGCGATCGGGGGGGCCGGGG-G-GTGTACGCACATGATGT
15727886 GCGATGGGTGCTGGTACTTGGCCC
193 GCGATGGGTGCTGGTACTTGGCCC
15727910 GCATACGGAG
Statistics
Matches: 3246, Mismatches: 412, Indels: 277
0.82 0.10 0.07
Matches are distributed among these distances:
867 194 0.06
868 12 0.00
869 62 0.02
870 194 0.06
871 123 0.04
872 3 0.00
873 1 0.00
874 57 0.02
875 116 0.04
876 6 0.00
878 2 0.00
879 1 0.00
880 1 0.00
883 3 0.00
884 105 0.03
885 120 0.04
886 14 0.00
887 58 0.02
888 12 0.00
889 43 0.01
891 1 0.00
892 1 0.00
893 6 0.00
895 7 0.00
896 152 0.05
897 489 0.15
898 208 0.06
899 51 0.02
900 165 0.05
901 22 0.01
902 4 0.00
903 18 0.01
904 9 0.00
905 42 0.01
906 52 0.02
907 18 0.01
908 14 0.00
909 49 0.02
910 27 0.01
911 39 0.01
912 38 0.01
913 37 0.01
914 30 0.01
915 36 0.01
916 36 0.01
917 23 0.01
918 28 0.01
919 40 0.01
920 60 0.02
921 56 0.02
922 17 0.01
923 4 0.00
924 4 0.00
925 2 0.00
926 6 0.00
927 221 0.07
928 57 0.02
929 9 0.00
933 3 0.00
934 2 0.00
936 2 0.00
937 24 0.01
938 10 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (892 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGACAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCAGGGCACCATCATCGGAGCATCACCGGAGA
ACCTGACCGGCGGCATTGGGGTTCGGCGATCGGGGGGGCCGGGGGGTGTACGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAGTTTTTTGTGC
ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATT
TTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGGTATAGTGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATAGACCGAACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAG
AGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:15727950 original size:26 final size:26
Alignment explanation
Indices: 15727910--15727962 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15727900 TACTTGGCCC
* * *
15727910 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACAGAGATCATTCCCAGTCTAA
15727936 GCATACAGAGATCATTCCCAGTCTAA
1 GCATACAGAGATCATTCCCAGTCTAA
15727962 G
1 G
15727963 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGATCATTCCCAGTCTAA
Found at i:15728127 original size:26 final size:26
Alignment explanation
Indices: 15728090--15728147 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
15728080 CGTGGGTTGA
*
15728090 CTAAGGCATACGGAGTTCATTTCCAGT
1 CTAA-GCATACGGAGTTCATTCCCAGT
15728117 CTAAGCATACGGAGTTCATTCCCAGT
1 CTAAGCATACGGAGTTCATTCCCAGT
15728143 CTAAG
1 CTAAG
15728148 ATCAGACCAG
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 26 0.87
27 4 0.13
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.28
Consensus pattern (26 bp):
CTAAGCATACGGAGTTCATTCCCAGT
Found at i:15728994 original size:26 final size:26
Alignment explanation
Indices: 15728964--15729016 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15728954 GTTGACTTAG
15728964 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15728990 GCATACGGAGTTCGTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15729016 G
1 G
15729017 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15730963 original size:26 final size:27
Alignment explanation
Indices: 15730910--15730963 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
15730900 GTTGACTTAG
*
15730910 GCATATGGAGTTCATTCCCCAGTCTAA
1 GCATACGGAGTTCATTCCCCAGTCTAA
15730937 GCATACGGAGTTCATT-CCCAGTCTAA
1 GCATACGGAGTTCATTCCCCAGTCTAA
15730963 G
1 G
15730964 ATGCGGACTG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 11 0.42
27 15 0.58
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (27 bp):
GCATACGGAGTTCATTCCCCAGTCTAA
Found at i:15732240 original size:17 final size:17
Alignment explanation
Indices: 15732218--15732250 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
15732208 CTGATTGGAT
15732218 GCATTGGGGTACCGACG
1 GCATTGGGGTACCGACG
*
15732235 GCATTGGGGTTCCGAC
1 GCATTGGGGTACCGAC
15732251 AATCGGGGGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.24, G:0.39, T:0.21
Consensus pattern (17 bp):
GCATTGGGGTACCGACG
Found at i:15732612 original size:587 final size:586
Alignment explanation
Indices: 15731088--15733845 Score: 4894
Period size: 587 Copynumber: 4.7 Consensus size: 586
15731078 GGTTCCAGCG
* * * * *
15731088 ATCGGGGGGG-CCGGGGGAGTGCGCACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATT
1 ATCGGGGGGGTCGGGGGGTGTGCACACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATT
* * * * * **
15731152 G-GCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTTAGATTTTACA
66 GACCCCCTATCCCTCATCAAACCTTGAGAACTCACTCCCCTTTAAAGCGCATTTGGGATTTTACA
* * * * *
15731216 GG-TTGCTACCAGTAGCCA--AATGTGTCTAAAATGGGACACGTTT-TTCAAATGGTCACAAAAT
131 GGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGACA-TTTTATTCAAATGGTCACAAAAT
* *** * * * *
15731277 CTTGTTCACTTTGGGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC-AAAATTCATGGATCATGT
195 CTTGTACACTTCAAGTTTTTAGCTTAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
** * * * *
15731341 CTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTAAAAAAATCCTAAACCGTAAAAAGTT
260 CTACCAAGTTCAGGGCAAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTT
**
15731406 TCAAAAATCGTGAAAAATATAAAACGAGTCGTCTTGCCATG-AACATCACGTGAAGGCTTAAGGG
325 TCAAAAATTATGAAAAATATAAAACGAGTCGTCTTGCCATGAAACATCACGTGAAGGCTTAAGGG
15731470 ACCATTGTATGAATTTACAAGCCATAAAAATGTCATTCCCAATCTAAGATCAGACCGGACCGAGG
390 ACCATTGTATGAATTTACAAGCCATAAAAATGTCATTCCCAATCTAAGATCAGACCGGACCGAGG
15731535 GTTATGGTAGCACATAATGGGCTCCAGCATGTGCTAGTGGCATATTTTTCTTCGCCAGGGTACCA
455 GTTATGGTAGCACATAATGGGCTCCAGCATGTGCTAGTGGCATATTTTTCTTCGCCAGGGTACCA
15731600 GCGTCGGAGCATTGTCGGACAACCTGATTGGATGCATTGGGGGTACCGACGGCATTGGGGTTCCG
520 GCGTCGGAGCATTGTCGGACAACCTGATTGGATGCATT-GGGGTACCGACGGCATTGGGGTTCCG
15731665 ACA
584 ACA
*
15731668 ATC--GGGGGTCGGGGGGTGTGCACACATGATGTGTGATGGGTGCTGGTACCTGGCCCTTATATT
1 ATCGGGGGGGTCGGGGGGTGTGCACACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATT
15731731 GACCCCCTATCCCTCATCAAACCTTGAGAACTCACTCCCCTTTAAAGCGCATTTGGGATTTTACA
66 GACCCCCTATCCCTCATCAAACCTTGAGAACTCACTCCCCTTTAAAGCGCATTTGGGATTTTACA
15731796 GGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGACATTTTATTCAAATGGTCACAAAATC
131 GGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGACATTTTATTCAAATGGTCACAAAATC
15731861 TTGTACACTTCAAGTTTTTAGCTTAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
196 TTGTACACTTCAAGTTTTTAGCTTAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
15731926 TACCAAGTTCAGGGCAAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTT
261 TACCAAGTTCAGGGCAAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTT
15731991 CAAAAATTATGAAAAATATAAAACGAGTCGTCTTGCCATGAAACATCACGTGAAGGCTTAAGGGA
326 CAAAAATTATGAAAAATATAAAACGAGTCGTCTTGCCATGAAACATCACGTGAAGGCTTAAGGGA
15732056 CCATTGTATGAATTTACAAGCCATAAAAATGTCATTCCCAATCTAAGATCAGACCGGACCGAGGG
391 CCATTGTATGAATTTACAAGCCATAAAAATGTCATTCCCAATCTAAGATCAGACCGGACCGAGGG
15732121 TTATGGTAGCACATAATGGGCTCCAGCATGTGCTAGTGGCATATTTTTCTTCGCCAGGGTACCAG
456 TTATGGTAGCACATAATGGGCTCCAGCATGTGCTAGTGGCATATTTTTCTTCGCCAGGGTACCAG
15732186 CGTCGGAGCATTGTCGGACAACCTGATTGGATGCATTGGGGTACCGACGGCATTGGGGTTCCGAC
521 CGTCGGAGCATTGTCGGACAACCTGATTGGATGCATTGGGGTACCGACGGCATTGGGGTTCCGAC
15732251 A
586 A
15732252 ATCGGGGGGGTCGGGGGGTGTGCACACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATT
1 ATCGGGGGGGTCGGGGGGTGTGCACACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATT
15732317 GACCCCCTATCCCTCATCAAACCTTGAGAACTCACTCCCCTTTAAAGCGCATTTGGGATTTTACA
66 GACCCCCTATCCCTCATCAAACCTTGAGAACTCACTCCCCTTTAAAGCGCATTTGGGATTTTACA
15732382 GGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACATTTTATTCAAATGGTCACAAAAT
131 GGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAAT-GGGACATTTTATTCAAATGGTCACAAAAT
15732447 CTTGTACACTTCAAGTTTTTAGCTTAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
195 CTTGTACACTTCAAGTTTTTAGCTTAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
15732512 CTACCAAGTTCAGGGCAAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTT
260 CTACCAAGTTCAGGGCAAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTT
15732577 TCAAAAATTATGAAAAATATAAAACGAGTCGTCTTGCCATGAAACATCACGTGAAGGCTTAAGGG
325 TCAAAAATTATGAAAAATATAAAACGAGTCGTCTTGCCATGAAACATCACGTGAAGGCTTAAGGG
15732642 ACCATTGTATGAATTTACAAGCCATAAAAATGTCATTCCCAATCTAAGATCAGACCGGACCGAGG
390 ACCATTGTATGAATTTACAAGCCATAAAAATGTCATTCCCAATCTAAGATCAGACCGGACCGAGG
15732707 GTTATGGTAGCACATAATGGGCTCCAGCATGTGCTAGTGGCATATTTTTCTTCGCCAGGGTACCA
455 GTTATGGTAGCACATAATGGGCTCCAGCATGTGCTAGTGGCATATTTTTCTTCGCCAGGGTACCA
15732772 GCGTCGGAGCATTGTCGGACAACCTGATTGGATGCATTGGGGTACCGACGGCATTGGGGTTCCGA
520 GCGTCGGAGCATTGTCGGACAACCTGATTGGATGCATTGGGGTACCGACGGCATTGGGGTTCCGA
15732837 CA
585 CA
15732839 ATC-GGGGGGTC-GGGGGTGTGCACACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATT
1 ATCGGGGGGGTCGGGGGGTGTGCACACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATT
15732902 GACCCCCTATCCCTCATCAAACCTTGAGAACTCACTCCCCTTTAAAGCGCATTTGGGA-TTTACA
66 GACCCCCTATCCCTCATCAAACCTTGAGAACTCACTCCCCTTTAAAGCGCATTTGGGATTTTACA
15732966 GGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGACA-TTTATTCAAATGGTCACAAAATC
131 GGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGACATTTTATTCAAATGGTCACAAAATC
15733030 TTGTACACTTCAAGTTTTTAGCTTAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
196 TTGTACACTTCAAGTTTTTAGCTTAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
15733095 TACCAAGTTCAGGGCAAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAAGTT
261 TACCAAGTTCAGGGCAAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGT-AAAAAGTT
15733160 TCAAAAATTATGAAAAATATAAAGAACGAGTCG-CTTGCCATGAAACATCAC-TGAAGGCTTAAG
325 TCAAAAATTATGAAAAATAT-AA-AACGAGTCGTCTTGCCATGAAACATCACGTGAAGGCTTAAG
15733223 GGACCATTGTATGAATTTACAAGCCCATAAAAATGTCATT-CCAATGCTAAGATCAGACCGGAGC
388 GGACCATTGTATGAATTTACAAG-CCATAAAAATGTCATTCCCAAT-CTAAGATCAGACCGGA-C
* *
15733287 CGAGGGTTATGG-A-CACATAATGGGCTCCCAGCCTGTGCTAGTGGCATATTTTTTTTTTCG-CA
450 CGAGGGTTATGGTAGCACATAATGGGCT-CCAGCATGTGCTAGTGGCATA--TTTTTCTTCGCCA
*
15733349 GGGTACCACCGTC-GAGCATTGTCGGAC-ACCTGATTGGATGCATTGGGGTACCGACGGCAATTG
512 GGGTACCAGCGTCGGAGCATTGTCGGACAACCTGATTGGATGCATTGGGGTACCGACGGC-ATTG
15733412 GGGTTCCGACA
576 GGGTTCCGACA
15733423 ATCGGGGGGGTCGGGGGGTGTGCACACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATT
1 ATCGGGGGGGTCGGGGGGTGTGCACACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATT
15733488 GACCCCCTATCCCTCATCAAACCTTGAGAACTCACTCCCCTTTAAAGCGCATTTGGGATTTTACA
66 GACCCCCTATCCCTCATCAAACCTTGAGAACTCACTCCCCTTTAAAGCGCATTTGGGATTTTACA
15733553 GGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACATTTTATTCAAATGGTCACAAAAT
131 GGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAAT-GGGACATTTTATTCAAATGGTCACAAAAT
*
15733618 CTTGTACACTTCAAGTTTTTAGCTTAATTTTTTTGTGCATACCAACAAAAATACAAGGATCACGT
195 CTTGTACACTTCAAGTTTTTAGCTTAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
15733683 CTACCAAGTTCAGGGCAAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTT
260 CTACCAAGTTCAGGGCAAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTT
15733748 TCAAAAATTATGAAAAATATAAAACGAGTCGTCTTGCCATGAAACATCACGTGAAGGCTTAAGGG
325 TCAAAAATTATGAAAAATATAAAACGAGTCGTCTTGCCATGAAACATCACGTGAAGGCTTAAGGG
15733813 ACCATTGTATGAATTTACAAGCCATAAAAATGT
390 ACCATTGTATGAATTTACAAGCCATAAAAATGT
15733846 TATTGGCATG
Statistics
Matches: 2111, Mismatches: 39, Indels: 49
0.96 0.02 0.02
Matches are distributed among these distances:
578 5 0.00
579 49 0.02
580 61 0.03
581 14 0.01
582 147 0.07
583 195 0.09
584 291 0.14
585 345 0.16
586 295 0.14
587 497 0.24
588 69 0.03
589 143 0.07
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (586 bp):
ATCGGGGGGGTCGGGGGGTGTGCACACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATT
GACCCCCTATCCCTCATCAAACCTTGAGAACTCACTCCCCTTTAAAGCGCATTTGGGATTTTACA
GGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGACATTTTATTCAAATGGTCACAAAATC
TTGTACACTTCAAGTTTTTAGCTTAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
TACCAAGTTCAGGGCAAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTT
CAAAAATTATGAAAAATATAAAACGAGTCGTCTTGCCATGAAACATCACGTGAAGGCTTAAGGGA
CCATTGTATGAATTTACAAGCCATAAAAATGTCATTCCCAATCTAAGATCAGACCGGACCGAGGG
TTATGGTAGCACATAATGGGCTCCAGCATGTGCTAGTGGCATATTTTTCTTCGCCAGGGTACCAG
CGTCGGAGCATTGTCGGACAACCTGATTGGATGCATTGGGGTACCGACGGCATTGGGGTTCCGAC
A
Found at i:15732827 original size:17 final size:17
Alignment explanation
Indices: 15732805--15732837 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
15732795 CTGATTGGAT
15732805 GCATTGGGGTACCGACG
1 GCATTGGGGTACCGACG
*
15732822 GCATTGGGGTTCCGAC
1 GCATTGGGGTACCGAC
15732838 AATCGGGGGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.24, G:0.39, T:0.21
Consensus pattern (17 bp):
GCATTGGGGTACCGACG
Found at i:15735056 original size:26 final size:26
Alignment explanation
Indices: 15735026--15735078 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15735016 GTTGAATTAG
*
15735026 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
15735052 GCATATGTAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15735078 G
1 G
15735079 ATCGAACCTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15739354 original size:26 final size:26
Alignment explanation
Indices: 15739325--15739403 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
15739315 CCGGTCCGAT
*
15739325 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15739351 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15739377 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15739403 C
1 C
15739404 CTAAGTCAAC
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15742570 original size:883 final size:871
Alignment explanation
Indices: 15736962--15754323 Score: 19060
Period size: 875 Copynumber: 19.8 Consensus size: 871
15736952 NNNNNNGCAT
* * * * * **
15736962 TACGCCGACGAGAGAGACGAGATGCACAAGCCGTGGATAGATAGGGTGGTAGGCAGGTTTAGGCA
1 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* * *
15737027 AATCTTCATATTTCTACGTGCCAATGCCTTTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
66 CATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * * * *
15737092 AGGCTTCACGCGAAGTTTCACGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTGAAACCTT
131 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA-CTT
* * *
15737157 TTGA-GGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
195 TTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
*
15737221 ATCCTTTTATTTTTGTT-G---G--C-------TTCAGCTAAAAACTCGAAGTGTACAAGATTTT
260 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
* *
15737273 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTGCTGGCAGCAAACTTGTAA
325 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
15737338 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA-GTTTGATGAAGGGATAAGGGGGCCAAT
390 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG-AGGGAT-AGGGGGCCAAT
* *
15737402 ATAAGGGCCAAGTACCAGCGCCCATCGCACATCATGTGCGCACACCCCTCGG--CCCCGATCG-C
453 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTC
* * * * * * *
15737464 GGAACCCC-ATACCG-CCGT-AAG--CTTC-T-ATGCTTGGCGATGGTGCCCCGGTGAAGAAAAG
518 GGAACCCCAATGCCGTCGGTCAGGTTCTCCGTGATGCTCGACGATGGTGCCCCGGCGAAGAAAA-
** * * *
15737522 ATGCAAC-CCA-CACTTGCCCTGAGCCCAGCATGTGGCTGCCACATCGTCCTC-GTCTTCGGAAT
582 ATGCGGCACCAGCACATGCCC-GAGCCCAGCATGT-GCTGCCGCAAC--CCTCGGTC--CGG--T
* ** * * *
15737584 GAACTGATGCTTAGA-TGGGAATGAACTCTATATG-CTAAGTCAACCCATGAAAAGATGCTTGCG
639 --CCT-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA-GCGTGCG
* *
15737647 GG-GCT-AGCCGGCCA-ATGGGG-GAGATG-GCAAG-C-GGGATC-GCCGGGT-CCTCTCT-CGT
699 GGCGCTCAGCCGGCCAGA-GGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGT
** * * * * ** * *
15737702 G-TGCTAAT-CTTCTGCAGCTACCCTCAG-CTCATCTGATCTTAGACT-AGAATGAACTACCGTA
763 GCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACT-CCGTA
* ****
15737763 TGCCTAAGCCAACTGACGAAACGAGCGAGGCGAAATTTTTTGG--GGGCAC
827 TGCCTAAGCCAACCGACGAAACGAGCG-GGCG-----GGCGGGCAGGGCAC
* * * *
15737812 TACGCCGG-CAGAGAGA-GGGATGCGCAAACCGTGGATCAATAGGGTGGTAGGTAGGTTTAAGCA
1 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* *
15737875 CATCTTCAAATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
66 CATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * * *
15737940 AGCCTTCACGTGAAGTTTTATGGCAAGACGACTTG-TTTCTATTTTTCATGATTTTTAAAACTTT
131 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
* * * * *
15738004 TTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGTGTTTT-GCTCCCAAACTTGGTAGATGGG
196 TTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGC-CCCAAACTTGGTAGACGTG
* *
15738068 ATCCTTGTATTTTTGTTGGCATGCA-AAAAAAACTTCAGCTAAAAACTCAAAATGTGTAGAAGAT
260 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAA-TTCAGCTAAAAACTC-GAA-GTGTACAAGAT
* * *
15738132 TTTGTGACCATTTG-AAAAAGTGTCCCCAATTTCAGAAACTTTAATGGCTACTAGTAGCAAACCT
322 TTTGTGACCATTTGAAAAAAGTGTCCCC-ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
**
15738196 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGATTTTTGATGAGGGATAGGGGGCCA
386 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
** *
15738261 ATATAATTGCCAAGTACCAGTACCCATCGCACATCATGTGCGCACACCCCCCTCGGCCCCCCCGA
451 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC-CGG-CCCCCCGA
* * * * ** * * *
15738326 TCGCCAGAACCCCAATGTCGTCGGTCAGATTCTTTGACGATGCTCCGATGATGGTGCCCCGACGA
513 TCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG-TGATGCT-CGACGATGGTGCCCCGGCGA
* ** * *
15738391 TGAAAAATGTC-G-----GCACATGCCCGAGCCCAGCATGTGCTATCGTAACCCTCAGT-C--T-
576 AGAAAAATG-CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTC
* * * *
15738446 -GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAACGAGTGTACGGGCGCT
640 CTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
* * * * * *
15738510 CAGTCGGCCAGAGGGGTGGGATGCACAAGCCGGGGATCGACCGGGTCCCCTTCTCCGTGCTGCCG
705 CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCG
* * * * *
15738575 ATCCTACCGCCGCAACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
770 ATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* *
15738640 CCAACCGACGAAACGAGCGGGCGAGCGGGCGGGCGGCCAC
835 CCAACCGACGAAACGAGCGGGCGGGCGGGC-AG-GG-CAC
* *
15738680 TACGTCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
1 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* *
15738745 CATCTTCATATTTCTACGTGCTAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
66 CATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* *
15738810 AGCCTTCACGTGAAGTTTCATGGCAAGACGAC-C-TATTTTTATTTTTCATGATTTTTGAAACTT
131 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT-TTTCTATTTTTCACGATTTTTGAAACTT
** * * * * *
15738873 TTTGTGGTTCAGGATTTTTTAAAATATTTTCAAAAGGACTTTTGGCCCCAAACTTGGTAGACATG
195 TTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
**
15738938 ATCCGCGTATTTTT-TTGGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
260 ATCCTTGTATTTTTGTT-GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* *
15739002 TGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGCCTACTGGCAGCAAACCTGTA
324 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
**
15739067 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTAAGGTTTGATGAGGGATAGGGGGCCAATA
389 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* *
15739132 TAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCTGGCCCTCCCGATCGTC
454 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC-CCCGATCGTC
* * * **
15739197 GGAACCCTAAAGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGATGAAGAAA
518 GGAACCCCAATGCCGTCGGTCAGGTTCTCC-GTGATGCT-CGACGATGGTGCCCCGGCGAAGAAA
* * * * *
15739262 AATGTGTCACCAGCACATGCCCGAGCCTAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCT
581 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCTATCT
* * * *
15739327 TAGACTGGCAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
646 TAGACTGGGAATGAACTCCGTATGCCTA-A----G--TCAAC-CC--A--C---GA-----AACG
* * * * * **
15739392 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC-GCTCAGCCGGTCAGAGGGGCG
691 -A--GCG--TG-C--GGGC-GCTCA-G---C---CG-GC---CAG---AGGGG--C------G-G
* * * * *
15739456 AGATGTGCAAGCCAGGGATTGGTCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCGCAACCC
724 -GATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCC
* * ** * *
15739521 TTGGTCCGG--CGTAATCTTAGACTGGGAATGAACTCTATATGCCTAAGCCAACCGATGAAATGA
788 TCGGTCTGGTCCG--ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
15739584 GCGGGCGGGCGGGC-GGGCAC
851 GCGGGCGGGCGGGCAGGGCAC
* * *
15739604 TATGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGCGGTAGGTGGGTTTAGGCA
1 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
*
15739669 CATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT-CCTTA
66 CATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * * **
15739733 AGCCATCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATGATTTTCAAAACTTT
131 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
* * ** * * * * *
15739798 ATGCGGTTTAGGATTTTTTATAATTTTTTC-AGAAGGTGCTTTGG-CCCAACCTTGGTAGACGGG
196 TTACGGTTCGGGATTTTTTAAAATTTTTTCGA-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
15739861 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
260 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
* * *
15739926 GTGACCATTTGAAAAAAGTGTCCTCATTTCAGACACATTAATGGCTACTGGCAGCAAACCTTTAA
325 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
15739991 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
390 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
*
15740056 AAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCTCGGCCCCCCTGATCGT
455 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC-CGGCCCCCC-GATCGT
* * *
15740121 CGGAACCCCAATGTCGTCGGTCAGGTTCTCC--G--G-T----GA---TGCTCCGGCAAAGAAAA
517 CGGAACCCCAATGCCGTCGGTCAGGTTCTCCGTGATGCTCGACGATGGTGCCCCGGCGAAGAAAA
** *
15740174 ATGCATCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTT
582 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CC-C--TC--G---G-TC--
*
15740239 AGACTAGCAATGAACTCCGTGTATGCTTAGACTGGGAATGAACACC-TATGCCTAAGTCAACCCA
635 ---C--G----G---TCC---TAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* ** * * ** *
15740303 CGAAACGAGCGTGCAGGCGCTCAATCTGCCAGAGGGGCGGGATGCGCAAGCTGTTGATCGGTCGG
684 CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGG
* ** * * *
15740368 GTCCCCCTCTACGTGCTGGTGATCCTGCTACCGCAACCCTTGGTCTGGTCTGATCTTAGACTGGG
749 GTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGG
* * *
15740433 AATGAACTCCATATACCTAAGCCAACCGACGAAACGA----GCGGGCGGAC-GGGCAC
814 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGGGCAC
* * * *
15740486 TACACCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCAATAGGGTGGTAGGTGGGTTTAAGCA
1 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* *
15740551 CATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTTTAAATTCATACAATGGTCCCTTA
66 CATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* **
15740616 AGCCTTCACGTGAAGTTTCATGGCAGGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTT
131 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
* * * * * *
15740681 TTGCGGTTCGGGATTTTTTAAAATTATTTCGAAAGGAGTTTTGACCCCAAAATCGGTAAACGTGA
196 TTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* * * *
15740746 TCCTTGTATTTTCT-TTGGCATGCACAAAAAAATTTAGCTACAAACTCGAGGTATACAAGATTTT
261 TCCTTGTATTTT-TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
* *
15740810 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAACCTATAA
325 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* *
15740875 AATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATAT
390 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
*
15740940 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACACCCCCGATCGTCG
455 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC-CCCCCGATCGTCG
* * * *
15741005 GAACCCCAATGCTGCCGGTCAGGTTCT-C----TG---G-CGATGGTTCCCCGGTGAAGAAAAAT
519 GAACCCCAATGCCGTCGGTCAGGTTCTCCGTGATGCTCGACGATGGTGCCCCGGCGAAGAAAAAT
* * * * * *
15741061 GCGGCACCAGCGCATGCCTGAGCCCAACATGTTCTGCCGCAACCCTAGGTCCGGTCCGATCTTAG
584 GCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCTATCTTAG
*
15741126 ACTGGGAATGAACTCCATATGCTTAGACTAGGATTGAACTCTGTATGCCTAAGTCAACCCACAAA
649 ACT-GG---G------A-ATG---A-AC------T---C-C-GTATGCCTAAGTCAACCCACGAA
* * * * *
15741191 ACGAGCGTGCAGGTGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATTGG-CTGGTCC
688 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCC
* * * * * *
15741255 TCCAT-TGCGTGCTGTCGATCCTGCTGCCACAACCCTCGGTCCGATCTGATCTTAGACTGGGAAT
753 -CCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAAT
** *
15741319 GAACTCCGTATGCCTAAGCCAATTGACGAAACGAGCGGGCGGGCGAGC-GGGCAC
817 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGGGCAC
* * * *
15741373 TACGTCGGCTAGACAGACGGGATGCACAAGCCGTGGATC-AGTAGGGTGGTAGGTGGGTTTAGGC
1 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA-TAGGGTGGTAGGTGGGTTTAGGC
* *
15741437 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAAACAATGGTCCCTT
65 ACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * * * **
15741502 AGGCCTTCACGTGAAGTTTCTTGGCAAGACGACTCGTTTTTTATTTTTCACAATTTTCAAAACTT
130 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTT
** * * *
15741567 TTTACGGTTCAAGATTTTTTAAAATTTTTTC-AGAAGTATTTTTGGCACCAAACTTGGTAGACGT
195 TTTACGGTTCGGGATTTTTTAAAATTTTTTCGA-AAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* *
15741631 GATCCTTGTATTTTTGTTGGCATGGA-AAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATTT
259 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* *
15741695 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGAAAACCTGTA
324 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* * *
15741760 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAAGTATAGGGGGCAAATA
389 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
*
15741825 TAAGGGCCAAGTGCCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCTCCGATCGTC
454 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC-CCGATCGTC
* * * *
15741890 GGAACCCTAATGCCGTCGATTAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGGTGAAGAAA
518 GGAACCCCAATGCCGTCGGTCAGGTTCTCCG-TGATGCT-CGACGATGGTGCCCCGGCGAAGAAA
* * * * *
15741955 AATGCGTCACCAGCACATGCTCGAGCCTAGCATGTGCTGCCACATCCCTCGGTCCGGTCCTATCT
581 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCTATCT
** * *
15742020 TAGACTGGCCATGAACTCCGTATGCCTTAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCG
646 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
*** * * *
15742085 ATTAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCTGGTCCTG
711 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTG
* ** * *
15742150 CTGCCACAACCCTCAATCTAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
776 CTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
15742215 GACGAAACGAGCGCGCGGCGGGCGGGCGGGCGGATGGGCAC
841 GACGAAACGA-------GCGGGCGGGCGGGC--A-GGGCAC
* * * * *
15742256 TACACCGGCTAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGATTTAGGTA
1 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
*
15742321 CATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
66 CATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* *
15742386 AGCCTTCACGTGATGTTTCATGGCAAGACGACTCGTTTTCTATTCTTCACGATTTTTGAAACTTT
131 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
* * * * * *
15742451 TTACGGTTCAGGATTTTTT-AAATTTTTTCGAAAGTAGTTTTCGACCCAAAATTGGTAGACGAGA
196 TTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* *
15742515 TCCTTGTATTTTTGTTGGCGTGGACAAAAAAATTCAGCTAAAAACTC-AGAGTGTACAAGATTTT
261 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA-AGTGTACAAGATTTT
15742579 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT-GCAGCAAACCTGTAA
325 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
*
15742643 AATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
390 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* * *
15742708 AAGGGCCTAGTGCCAGCACCCATCGCACATCATGTGCACACACCCGCCCGGCCCCTCCGATCGTC
455 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-CCCGGCCCC-CCGATCGTC
* * * * *
15742773 AGAACCACAAAGCCGCCGGTCAGGTTCTCCGGTGATGCTTCGACGATGGTGCCCCGACGAAGAAA
518 GGAACCCCAATGCCGTCGGTCAGGTTCTCC-GTGATGC-TCGACGATGGTGCCCCGGCGAAGAAA
* * * * ** * *
15742838 AATGCGTCACCAGCACATGCTCAAGCCTAGCATGTGCTATCACATCCCTCGATCTGGTCCGATCT
581 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA-ACC-C--TC--G---G-TC-
* *
15742903 TAGACTGGCAATGAACTCTATATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCAT
635 ----C-GG---T---C-C--TAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * *
15742968 GAAACGAGCGTGCGGGCGCTCAGTC-GACATGAGGGGCGGGATGCGCTAGCCGGGGATCGGTCGG
685 GAAACGAGCGTGCGGGCGCTCAGCCGGCCA-GAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGG
* * * * * *
15743032 GTCCCCCTCTGCATGCTGTCGATCCTGCTGCCGTAACCCTTGGTCTGGGCTGATCTTAGACTGGG
749 GTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGG
* * *
15743097 AATGAACTCCGTATGCCTAAGCCAATCGATGAAACGAGCGGGTGGGCGGGCA-GGCAC
814 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGGGCAC
* *
15743154 TACGCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGCTTAGGCA
1 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* * * * * *
15743219 TATCATCATATTTGTACATGCCAATGCCATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTA
66 CATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* *
15743284 AGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTCCACGATTTTTGAAACTTT
131 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
* * * ** *
15743349 TTGCAGTTTGAAATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTTGACGTGA
196 TTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* * * **
15743414 TCCTTGTATTTTTTTTGTCATGCACAAAAAAATTCAGCCAAAAACTCGTGGTGTACAAGATTTTG
261 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
*
15743479 TGACCATTTGAAAAAACTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
326 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* *
15743544 ATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCCAATATA
391 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
*
15743609 AGGGCCAAGTACCAGCACCCACCGCACATCATGTGCGCACACCCCTCCGGCACCCCCGATCGTCG
456 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCGGC-CCCCCGATCGTCG
* *
15743674 GAACCCCAGTGCCGTCGGTCAGGTTCTCC--GA----C-A--ATGGTGCCCCGACGAAGAAAAAT
519 GAACCCCAATGCCGTCGGTCAGGTTCTCCGTGATGCTCGACGATGGTGCCCCGGCGAAGAAAAAT
* * * * * *
15743730 GCGACACCAGCACATGCCCAAACCTAGCATGTACTGTCGCAACACTCGGTTCGGTCCGATCTTAG
584 GCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC-C-C---TC-G---G-TC----
* * **
15743795 ACTAAGAATGAACTCCATATGCTTAGACTGGGAATGAACTTCGCATGCCTAAGTCAACCCATAAA
635 -C---G---G---TCC-TAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
15743860 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCC
688 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCC
* * * * *
15743925 CTCTCTACGTGCTGCCGATCTTGCTGCCGCAACCCTCGATCTGGTGCGATCTTAGACTGGGAATG
753 CCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATG
* * * *
15743990 AACTTCGTACGCCTAAGCCAACTGACAAAACAAGAGGGCGGGCGGGCGGGCA-GGCAC
818 AACTCCGTATGCCTAAGCCAACCGACGAAAC--GA--GCGGGCGGGCGGGCAGGGCAC
* * *
15744047 TAGGTCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
1 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
*
15744112 CATCTTCATATTTCTGCGTGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTTA
66 CATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* *
15744177 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTT
131 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
* * *
15744242 TTACGGTTCGGGCTTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAAGTTGGTAGACGTGA
196 TTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* *
15744307 TCCTTGTATTTTTGTTGGCGTGCAC-AAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTG
261 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
* *
15744371 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGCTACTGGCGGCAAACCTGTAAA
326 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* * * **
15744436 ATCTCAAATGTTCTTTAAGGGGGTGTGTGTTCTCAAGGTTTGATGAGGGATAGGGGTTCAATATA
391 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* * * *
15744501 AAGGCCAAGTACTAGAACCCATCGCACATCATGTGCGCACACCCCCCCGGACCCCCGATC-TCCG
456 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCGATCGT-CG
* * * *
15744565 GTATCCCAATGCCGTCGGTCAGGTTCTCC--GA---T----GATGGTGCCCCGGTGAAAAAAAAT
519 GAACCCCAATGCCGTCGGTCAGGTTCTCCGTGATGCTCGACGATGGTGCCCCGGCGAAGAAAAAT
** * * * * * * * ** * ****
15744621 ATGGTAGCAGCACAT-CCTCGAGCCTAGCATCGGTCCGGTTCGATCTTAGACTGGGAATGAACTC
584 GCGGCACCAGCACATGCC-CGAGCCCAGCAT--GTGCTG-CCG--C-AACCCTCGG--TCCGGTC
* * * *
15744685 CGTATGCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTCCGAGCC
640 C-TAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * *
15744750 CTCAACCGGCC-GAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGAGT-CTCC-CT---T--TG-
703 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGC
*
15744806 C-A---TGCT------A-------TC---T--GATCTTAGACTGGGAATGAACTTCGTATGCCTA
768 CGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * ** *
15744849 AGCCAACCGATGAACCGAGAAGGC--G-AGG--GGGCAC
833 AGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGGGCAC
* * * * * *
15744883 TACACAGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGCAGGTGGGTTTCGGCG
1 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* * * * **
15744948 TATCTTCATATTTCTACGTGGCAATGCCATTTTTATGGCTTGTAAATTTATACAATCATCCCTTA
66 CATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * ** * *
15745013 AGCCTTCACATGAAGTTTAATGGTGAGACAACTCATTTTCTATTTTTCACGATTTTTGAAACTTT
131 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
* * * * *
15745078 TTA-GAGTTTGGGATTTGTTAAAATTATTTT-GGATGGAGTTTTGGCCCCAAACTTGGTAGACAT
196 TTACG-GTTCGGGATTTTTTAAAATT-TTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* *
15745141 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT-ACAACTCGTAGTGTACAAGATTT
259 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* *
15745205 TGTGACCATTTGAAAAAAGTGTGCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTA
324 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
15745270 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
389 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* ** *
15745335 TAATGGCCAAGTACCAGCACCCATCATACATCATGTGCGGACACCCCCCTGGCCCCTCCGATCGT
454 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GGCCCC-CCGATCGT
* * * * ** *
15745400 CGAAACCTCAATGCCGTTC-GTAAGGTTCTCCGGTGATGCTTCGGCGATGGTGCCTTGGCAAAGA
517 CGGAACCCCAATGCCG-TCGGTCAGGTTCTCC-GTGATGC-TCGACGATGGTGCCCCGGCGAAGA
* * * * * *
15745464 AAAATGCGACACCAGCACATGCTCGAGCCCAGCATGTGCAGCCGCAACCCTCGGTCTGATCCGAT
579 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCTAT
* * ** ** * * *
15745529 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACTCATAAAATAAGCGTACGGGTGCTCAAC
644 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * *
15745594 CGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGTTCGGGTCCCCCTCTCCGTGCTGTCGATCC
709 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
* ** * * *** * *
15745659 TGCTACCGTGACTCTTGGTCCAATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGGCAA
774 TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* ** * * **
15745724 TCGATAAAATGAGTGGGCGGGCAGGCGGGTGGGCAC
839 CCGACGAAACGAGCGGGCGGGC--G-GGCAGGGCAC
* * * *
15745760 TACGCCTGCCAGAGAGATGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTTGGTTTAGGCA
1 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* * **
15745825 CATCTTCATATTTCTACGTGCCAATGCCATTTTGT-TGGCTTGTAAATTTATACAATCATCCCTT
66 CATCTTCATATTTCTGCGTGCCAATGCCATTTT-TATGGCTTGTAAATTCATACAATGGTCCCTT
* * * *
15745889 AAGCCTTCACGTGAAGTTTAATGGCGAGACAACTCGTTTTCTATTTTTCATGATTTTTGAAACTT
130 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTT
* * * *
15745954 TTTACGGTTCGGGATTTGTTAAAATTATTTT-GGATGGAGTTTTGGCCCCAAACTTGGTAGACAT
195 TTTACGGTTCGGGATTTTTTAAAATT-TTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* *
15746018 GATCCTTGTATTTTTGTTGGCATTCAC-AAAAAATTCAGCT-ACAACTC-ATAGTGTACAAGATT
259 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA-AGTGTACAAGATT
*
15746080 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGT
323 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
** * **
15746145 AAAATCTCAAATGCTCTTTAAGGGGAAGTGAGTTCTCAAGGTTTGATGAGGGATATAGGGCCAAT
388 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* *
15746210 ATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGCACACCCCCCAGCCCCCCCGATCGT
453 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GGCCCCCCGATCGT
* * * * * * * * *
15746275 CGGAACCCCAATGCCGCCAGTGAAGTTCTCTGGCGTTGCTCCGGA-GATGGTACCCCGGTGAAGA
517 CGGAACCCCAATGCCGTCGGTCAGGTTCTC-CGTGATGCT-C-GACGATGGTGCCCCGGCGAAGA
* * * *
15746339 AAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCGATCCGGT-CTGA
579 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCT-A
* *
15746403 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGCGCTCAG
643 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
15746468 CTGGCCAGAGGGGCGGGATGTGCAAGCCGGGGATCGGCCGGGTCCCCATCTGCATGCTGCCGATC
708 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATC
*** * * *
15746533 CTGCTATTGCAACCCTCAGTTTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
773 CTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* *
15746598 ACCGATGAAACGAGCGGGCGGTAGGGCGGG-TGGGCAC
838 ACCGACGAAACGAGCGGGC----GGGCGGGCAGGGCAC
* *
15746635 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGCTGGGTTTAGGTA
1 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* *
15746700 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCGTTA
66 CATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * * *
15746765 AGCCTTCATGTGAAGTTTCACGGCAAGACGACTTGTTTTCTATTTTTCATGATTTTTGAAACTTT
131 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
* * * ** *
15746830 TTGCGGTTCGTGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGTGCCAAGCTTGGTAGACGTGA
196 TTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* * * *
15746895 TCCTTTTATTTTTGTTGGCATGCACAAAAAAATTAAGCTAAAAAATTGAAGTGTACAAGATTTTG
261 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
* * * * * *
15746960 GGACCATTTGAAAAAAGTGTCCCCATTTTAAACAATTTAATTGCTACTGGCAGGAAACCTGTAAA
326 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
*
15747025 ATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGACCAATATA
391 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* * * *
15747089 AGGGCCAAGTAGCAGCACCCATCGCACATCATGTGCGCACACCCCCAGGCCCCCCCAATCATCGG
456 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGTCGG
* * * * *
15747154 AACCCTAATGCTGCCGGTCAGGTTCTCCGACGATGCTTCGACGATGGTGCCCCGACGAAGAAAAA
520 AACCCCAATGCCGTCGGTCAGGTTCTCCG-TGATGC-TCGACGATGGTGCCCCGGCGAAGAAAAA
* * * * *
15747219 TGTGGCACCAGCACATGCCCGAGACCAGCATGTGCTACCGCAACCCTCGGTCCGTTCCAATCTTA
583 TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCTATCTTA
* ** *
15747284 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCTATCAGCCGAC
648 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * *
15747349 AAGAGGGGTGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCT
713 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCT
* **** *
15747414 ACCGCAACCCTCGGTCCAAACCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
778 GCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
15747479 CGAAACGA--------GCGGGC-GGGCAC
843 CGAAACGAGCGGGCGGGCGGGCAGGGCAC
*** * * * *
15747499 TACGTTTGCTAGATAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGACA
1 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
*
15747564 CATCTTCATATTTTTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTT
66 CATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT-CCCTT
* * * *
15747629 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATATTTCACGATTTTTAAAACGT
130 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTT
* * * *
15747694 TTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGGCCCAAACTTGGTAGACGTG
195 TTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* * * *
15747759 ATGCTTGTATTTTTTTTGGCATGTACAAAAAATTTCAGCTAAAAACTCGAAGTGTACAAGATTTT
260 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
* * * *
15747824 GTGACCATTTGAAAAAAGTGTGCCCATTTCAGACCCTTTAAAGGCTGCTGGCAGCAAACCTGTAA
325 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* * * *
15747889 AATCTCAAATGCTCTTT-AGGGGGTGCGAGTTCTCAAGGTTTGATGAAGGATAAGGGGCCAATAT
390 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* * *
15747953 AAGGGCCAAGTACCAGCACGCATCGCACATCATGTGCGAACATGCCCCCC-GCCCACCCGATTGT
455 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCCCGGCCC-CCCGATCGT
*
15748017 CGGAACCCCAATGCCGTCGATCAGGTTCTCC---A------ACGATGGTGCCCCGGCGAAGAAAA
517 CGGAACCCCAATGCCGTCGGTCAGGTTCTCCGTGATGCTCGACGATGGTGCCCCGGCGAAGAAAA
* ** * * * * * *
15748073 ATGCAGCACCAGCACATGCCTAACCCCAGCATGTGCTTCCGTAACCCTTGGGCCGGTCCGATCTT
582 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCTATCTT
15748138 AGACTGGGAATGAACTCCGTATGCTTAGAGTGGGATGAACACCGTATGCCTAAGTCAACCCACGA
647 AGACTGGGAATG-A------A--C-----------T-----CCGTATGCCTAAGTCAACCCACGA
* * ** * * *
15748203 AACGAGCGTGCGGGCGCTCAGCCGGCCAGATGGGTGGGATGCATAAGCCAGGTATTC-ACCGGGT
687 AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA-TCGGCCGGGT
* * * * * * * *
15748267 CCCCCTCTACATGCTGCCAACCCTGCTGTCGCAACCGTCAGT-TCGGTCCAATCTTAGACTGGGA
751 CCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCT-GGTCCGATCTTAGACTGGGA
*
15748331 ATGAACTCCGTATGCCTCAGCCAACCGACGAAACGAGCGGGCGGGCGGGC-GGGCAC
815 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGGGCAC
* *
15748387 CATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
1 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* *
15748452 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACACTGGTCCCTTA
66 CATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
*
15748517 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCTCGATTTTTGAAACTTT
131 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
* * *
15748582 TTGTC-GTTCGGGATTTTTTAAAATTTTTTCGGAAA-GAATTTTGGCCCCAAACCTGGTAGACGT
196 TT-ACGGTTCGGGATTTTTTAAAATTTTTTC-GAAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
** *
15748645 GATCCTTGTATTTTTGTTATCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
259 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* *
15748710 TGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAGTGGCTACTGGCAGCAAACCTGTA
324 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* *
15748775 AAATCTAAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATA
389 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
*
15748840 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAACCCCCCCGGCCTCCCCGACCG
454 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-A-CCCCCCGGCC-CCCCGATCG
* ** * *** **
15748905 TCGGAACCCCAATTCCACCGGTCAGGTTCCCCGGTGATGCTCCGGTAATGGTGCCCCGGCTCAGA
516 TCGGAACCCCAATGCCGTCGGTCAGGTTCTCC-GTGATGCT-CGACGATGGTGCCCCGGCGAAGA
* * * * ** *
15748970 AAAATGCGGCACCAACATATGCCCGAGCCCAGGATGTGCTGTCATAACACTCGGTCCGGT-CTGA
579 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCT-A
* *
15749034 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAG
643 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
15749099 CCGGCCAGAGGGGCGGGATGCGAAAGCCAGGGATCGGCCGGGTCCCCCTCTGCATGCTGCCGATC
708 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATC
* * * * * * * *
15749164 CTTCTACCACAATCCTCGGTTTGGTTCGATATTAGACTGGGAATGAACTCCGTATGCCTAAGGCA
773 CTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
** * * *
15749229 ATTGATGAAATGAGCGGGCGGGCGGGC-GGGCGGGC
838 ACCGACGAAACGAGCGGGCGGGCGGGCAGGGC--AC
* * * *
15749264 TATACGTCGGTCAGAGAGACGGGATGCGGAAGCCGTGGATCGATATGGTGGTAGGTGGGTTTAGG
1 --TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* *
15749329 CACATCTTCATA-TTCTGCGTGCCAATGCCATTTTTATGGATTGTAAGTTCATACAATGGTCCCT
64 CACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * *
15749393 TAAGCCTTCACGTGAAATTTCATGGCAAGACGAATCGTTTTCTCTTTTTCACGA-TTTTGAAACT
129 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
* * * ** *
15749457 TTTTACGGTTCGAGATTTTGTAAAATTTTTTCG-GAGGAGTTTTGG-CTAAAACCTTGGTAGACA
194 TTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAA-CTTGGTAGACG
* * *
15749520 TGATCCTTGTATTTTT-TTGGCATGCACAAAACAATTCAGCTATAAACTCGAAGTGTATAAGATT
258 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* *
15749584 TTGTGACCA-TTG-AAAAAGTTTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGT
323 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * *
15749647 AAAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTCTTGAGGTTTGATGAGGGTTAGGGGGCCAAT
388 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * **
15749712 ATAAGGGCCAAGTACCAGTA-CCATCGCACATCATGT-TGC-CACCATCCGGCCCCCCGATCGTC
453 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTC
* *
15749774 -GAAACCCAATGCC-TACCGGTCAGGTTCTCCGATGATGC-CGACGATGGTG-CCTGGCGAAGAA
518 GGAACCCCAATGCCGT--CGGTCAGGTTCTCCG-TGATGCTCGACGATGGTGCCCCGGCGAAGAA
* * *** *
15749835 AAATGAGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCATGACCCTCGGTCCGGTCCGATC
580 AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCTATC
15749900 TTAGACTGGGAATGAACTCCGTATGCTTGGACTGGGAATGAAATCCGTATACCTAAGTCAACCCA
645 TTAGACTGGGAATGAA---C---T-C-----C---G--T---AT--G----CCTAAGTCAACCCA
* * * ** *
15749965 CGAAACGAGTGTGCGGGCGCTCAGCCGGCCAGCA-GGGTGGGATGCGTAAGCCAAGGTTCGGCCG
684 CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG-AGGGGCGGGATGCGCAAGCCGGGGATCGGCCG
* ** * * * * *
15750029 GGTCCCACTCTATGTGCTACCGATCCTGCTACTGCAACCCCCGGTCTGGTCTGATCTTAGACTGG
748 GGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGG
* *
15750094 GAATGAACTCCATATGCCTAAGCC-ACCGACG-AACAAGCGGGCGGGCGGGCA-GGCAC
813 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGGGCAC
* * * * *
15750150 TACGTCGGCCAGAGAGACGGGATACGCAAGCCATGGATAGATAGGGTGGGAGGTGGGTTTAGGCA
1 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* * * * *
15750215 CATCTTCATATTTTTGCATGGCAATGCCATTTTTTTGGCTTTTAAATTCATACAATGGTCCCTTA
66 CATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * * * **
15750280 AGCCCTCACGTGAAGTTTCATGGTAAGACGACTCATTTTCCATTTTTCATAATTTTTGAAACTTT
131 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
* * * ** * *
15750345 TTATGGTTCTGGATTTTTTAAAATTTTTTCGAAAGTAGTTTTCACACCAAACTTGGTAGACATGA
196 TTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* * *
15750410 TCCTTGTATATTTGTTGGCATGCACAAAAAAACTT-AGCTAAAAACTTGAACTGTACAAGATTTT
261 TCCTTGTATTTTTGTTGGCATGCACAAAAAAA-TTCAGCTAAAAACTCGAAGTGTACAAGATTTT
* * **
15750474 GTGACCATTTGAAAAAAGTGACCCCATTTCAGACATTTTAATGGCTACTTACAGCAAACCTGTAA
325 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* *
15750539 AATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATAT
390 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* * * *
15750604 AAGGACCAACTACCAGCACCCATCGCACATCATGTGCGCACACCCCGCGGCCCCCCCGATCGTCA
455 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGTCG
* * * * * *
15750669 GAACCCTAATGCCGCCAGTCAGGTTCTCC--G--G-T----GATGGTGTCCCGACGAAGATAAAT
519 GAACCCCAATGCCGTCGGTCAGGTTCTCCGTGATGCTCGACGATGGTGCCCCGGCGAAGAAAAAT
* * * * *
15750725 ACGGCACCAGCACATGCCTGAGCCCAGCATGTGCTACCGCAACCCTTGGTCTGGTCCTATCTTAG
584 GCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCTATCTTAG
** * *
15750790 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAATGAGCGTGCGGGCGCTCAACCGGCC
649 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * *
15750855 AGAGGGGCGGGATGCGCAAGCTGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGTTG
714 AGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTG
* * *
15750920 CTGCAACCCTCGGTCCGGTCCGGTCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
779 CCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
15750985 GAAACGA----GCGGGCGGGC-GGGCAC
844 GAAACGAGCGGGCGGGCGGGCAGGGCAC
* * *
15751008 TACGCCGGCCAGAGAGACAGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGCGTTTAGGCA
1 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* *
15751073 CATCTTCGTATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
66 CATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
*
15751138 AGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
131 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
* * * * * **
15751203 TTGCTGTTCAGGATTTTGTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGGTGTGA
196 TTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* * *
15751268 TCCTTGTATTTTTTTTGGCTTGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
261 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
**
15751333 TGATGATTTGAAAAAAGTGTCCCCATTTCA-ACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
326 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* * * * *
15751397 ATCTCAAATGCTTTTTAAGGGGGTGCGAGTTCTTGAGGTTTGATGAGGGATAAGGGGCCAATATG
391 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* * * * * *
15751462 AGGGCCAAGTACCAGAACCCATCAACACTTTATGTGCGTACAGCCCCCCGG-CCCCCGATCGTTG
456 AGGGCCAAGTACCAGCACCCATC-GCACATCATGTGCGCACA-CCCCCCGGCCCCCCGATCGTCG
* * * *
15751526 GAACCCCAATGTCGTCGGTAAAGTTCTCC--G--G-T----GATGGTGCCCCGACGAAGAAAAAT
519 GAACCCCAATGCCGTCGGTCAGGTTCTCCGTGATGCTCGACGATGGTGCCCCGGCGAAGAAAAAT
* * *
15751582 GCGGCACCAGCACATGCCCCGAGCCCAGCATGTTCTACCGTAACCCTCGGTCCGGT-CTGATCTT
584 GCGGCACCAGCACATG-CCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCT-ATCTT
* * * *
15751646 AGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGACCGTGCGGGCACTCAGGCC-
647 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA-GCCG
* * * * * *
15751710 CCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCAGGTCCCCCTCTGTGTGCTGCTGATCTTG
711 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTG
** ** * * * *
15751775 CTGTGGCAACCCTCGGTCCAGTCTGATCTTAGATTAGGAATGAACTCCGTATGCCTAAGCCAACG
776 CTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* *
15751840 GATGAAACAAGCGGGCGGGCGGGCA-GGCAC
841 GACGAAACGAGCGGGCGGGCGGGCAGGGCAC
*** * * * *
15751870 TACATTGGCCAGAGAGACGGGATGCGTAACCCGTGTATCGATAGTGTGGTAGGTGGGTTTAGGCA
1 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
** * *
15751935 CATCTTCATATTAATGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGCCCCTTA
66 CATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
15752000 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA-TTTTCACGATTTTTGAAACTTT
131 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
* * * *
15752064 TT--GGGTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGA
196 TTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* *
15752127 TCCTTGTATTTTTGGTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
261 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
* * *
15752192 TGACCATTTGAAAGAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGACCGCAAA-CTGTAAA
326 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* * *
15752256 ATCTCAAATGTTCTTTATGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATG
391 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* * * *
15752321 AGGG-CAAGTACCAGCACTCATCACACATTATGTGCACGCAGC-CCCCCCGG-CCCCGGATCGTC
456 AGGGCCAAGTACCAGCACCCATCGCACATCATGTG--CGCA-CACCCCCCGGCCCCCCGATCGTC
* *** * ** * * *
15752383 AGAACCCCAATTTTGCCAATCAAG-T-T-C----T-C-CGACGATGGTGCCCTGACGAAGAAAAA
518 GGAACCCCAATGCCGTCGGTCAGGTTCTCCGTGATGCTCGACGATGGTGCCCCGGCGAAGAAAAA
*
15752439 TGCGGCACTAGCAC-TGGCCCGAGCCCAGCATGTGCTGCCTGCAACCCTCGGTCCAGTCTGATCT
583 TGCGGCACCAGCACAT-GCCCGAGCCCAGCATGTGCTGCC-GCAA-CC-C--T-C-G---G-TC-
*
15752503 TAGACTGAGAATGAACTTCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
635 ----C-G-G--T---C--C-TAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * **
15752568 GAAACGAGCGTGCGGGCGCTCAGTCTGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGATCGGG
685 GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGG
* * * * * * *
15752633 TCCCCCTTTGCATGCTGCCGATCCTACTACCGTAACCCAT-GGAT-GGGTCCAATCTTAGACTGG
750 TCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCC-TCGG-TCTGGTCCGATCTTAGACTGG
* * * *
15752696 GAATGAACACCGTATGCCTAAGCCAACCGA-TAAA--AG-GAGCGGGCGGGTA-GGCAC
813 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGGGCAC
* * * *
15752750 TACGTCGGCTAGAGAGACGGGATGCGCAAGCCGTGAATCGATAGGGTGGTAGGTGAGTTTAGGCA
1 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* ** * * *
15752815 CATCTTAATATTTCTATGAGCCAATGCCATTTTTATAGCTTGTAAATTCATACAATGGTCCCTTC
66 CATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* *
15752880 AGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTT
131 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
** * * * * *
15752945 TGGCGGTTCGGGATTTTTTAAAATTTTTTTGGATGGAGTTTTGGCCCCAAACTTGATAGATGTGA
196 TTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* * *
15753010 TCCTTGTATTTTTGTTGGCGTGCATAAAAAAATTCAGCTAAAAATTCGAAGTGTACAAGATTTTG
261 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
*
15753075 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCACCAAACCTGTAAA
326 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* *
15753140 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTTTGAGGTTTGATGAGGGATA--GGGCCAATATA
391 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* **
15753203 AGGGCCAAGTA-GAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCTCCGATCACCGG
456 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC-CCGATCGTCGG
* ** ** * ** *
15753267 AACCCCAATGCCATCGGTCAAATTCTGTTGCGATGCTTCGGGGATGGTGCCCCGACGAAGAAAAA
520 AACCCCAATGCCGTCGGTCAGGTTCT-CCGTGATGC-TCGACGATGGTGCCCCGGCGAAGAAAAA
* * * *
15753332 TGCGGCACCAGAAAATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCGGTCCAATCTGATCTTA
583 TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-G--------G-TC---
* * * * *
15753397 GACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCTGTATGCCTCAGTCAACCAATGA
635 --C---G---G---TCC-TAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * * * * *
15753462 AACGAGTGTGCGGGCACTCAGCTGACCAGAGGGGCGTGATGCGCTAGCCGGGGATCGATCGGGGA
687 AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC-GGG---GATC---G-
* * * ** ** * * *
15753527 TCAGCCGGGTCCCTCGCTGCGTGCTGTCGATCCTGCTATCATAATCCTCGGTCTTGTTCGATCTT
744 ---GCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTT
* * *
15753592 GGACTGGGAATGAATTTCGTATGCCTAAGCCAACCGACGAAACGA----GCGGGC---C--GGCA
806 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGGGCA
15753648 C
871 C
* * * *
15753649 TATGCTGGCCAGAGAGACGGGATGCGCAAGTCGTCGATCGATAGGGTGGTAGGTGGGTTTAGGCA
1 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* * *
15753714 CATCTTCATATTTCTACATGCCAATGCCATTTTTGTGGCTTGTAAATTCATACAATGGTCCCTTA
66 CATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
** *
15753779 AGCCTTCACGTGAACATTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTT
131 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
* * * * * **
15753844 TTATC-GTTCAGGA-TTTTTATAAATTTTTTCGGAAGGGGTTTTGACCCCAAACTTGGTAGCCAA
196 TTA-CGGTTCGGGATTTTTTA-AAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* * * *
15753907 GATCCTTGTATTTTTATTGGCAAGCACAAAAAAATTCAGCTAAAAACTCGAATTGTACAAGACTT
259 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
15753972 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
324 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
*
15754037 AAATCTCAAATGCCCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
389 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
**
15754102 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCACCCCACCGGCATCCCGATC
454 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG--CA-CACCCC-CCGGCCCCCCGATC
* * * * * * * * *
15754167 ATCGAAACCCCAATGTCGTCTGTCAGGTTCTCCGACGATGCTCGGCGTTGGTGCCTCGGGGAAGA
515 GTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG-TGATGCTCGACGATGGTGCCCCGGCGAAGA
* * * * * *
15754232 AAAATGTGACACCAGCACATGCTCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGATCCGAT
579 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCTAT
* *
15754297 CTTAGACTGGGAATGAACACCATATGC
644 CTTAGACTGGGAATGAACTCCGTATGC
15754324 TTAGACTGGG
Statistics
Matches: 14174, Mismatches: 1721, Indels: 1206
0.83 0.10 0.07
Matches are distributed among these distances:
835 7 0.00
836 436 0.03
837 48 0.00
838 63 0.00
839 34 0.00
840 13 0.00
841 2 0.00
842 7 0.00
843 1 0.00
844 46 0.00
845 2 0.00
846 15 0.00
847 92 0.01
848 172 0.01
849 10 0.00
850 7 0.00
851 5 0.00
855 89 0.01
856 9 0.00
857 254 0.02
858 672 0.05
859 237 0.02
860 191 0.01
861 105 0.01
862 291 0.02
863 19 0.00
864 216 0.02
865 350 0.02
866 130 0.01
867 61 0.00
868 208 0.01
869 127 0.01
870 267 0.02
871 137 0.01
872 120 0.01
873 130 0.01
874 51 0.00
875 856 0.06
876 688 0.05
877 410 0.03
878 124 0.01
879 92 0.01
880 342 0.02
881 35 0.00
882 402 0.03
883 786 0.06
884 609 0.04
885 154 0.01
886 471 0.03
887 555 0.04
888 294 0.02
889 308 0.02
890 277 0.02
891 109 0.01
892 305 0.02
893 355 0.03
894 38 0.00
895 13 0.00
896 15 0.00
897 87 0.01
898 207 0.01
899 548 0.04
900 239 0.02
901 28 0.00
902 42 0.00
903 83 0.01
904 71 0.01
905 46 0.00
906 9 0.00
908 4 0.00
909 180 0.01
910 3 0.00
911 54 0.00
912 5 0.00
913 5 0.00
914 2 0.00
915 5 0.00
916 1 0.00
917 2 0.00
918 6 0.00
919 1 0.00
920 2 0.00
921 2 0.00
922 1 0.00
923 278 0.02
924 191 0.01
925 41 0.00
926 6 0.00
927 1 0.00
928 122 0.01
930 2 0.00
931 4 0.00
932 1 0.00
933 1 0.00
935 3 0.00
937 1 0.00
938 9 0.00
939 19 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (871 bp):
TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
CATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
TTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGA
ACCCCAATGCCGTCGGTCAGGTTCTCCGTGATGCTCGACGATGGTGCCCCGGCGAAGAAAAATGC
GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCTATCTTAGAC
TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
AGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCC
GCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
AACGAGCGGGCGGGCGGGCAGGGCAC
Found at i:15742952 original size:26 final size:26
Alignment explanation
Indices: 15742901--15742953 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15742891 CTGGTCCGAT
*
15742901 CTTAGACTGGCAATGAACTCTATATG
1 CTTAGACTGGCAATGAACTCCATATG
*
15742927 CTTAGACTAGG-AATGAACTCCGTATG
1 CTTAGACT-GGCAATGAACTCCATATG
15742953 C
1 C
15742954 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCATATG
Found at i:15744694 original size:26 final size:26
Alignment explanation
Indices: 15744665--15744717 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15744655 CCGGTTCGAT
*
15744665 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
15744691 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
15744717 C
1 C
15744718 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:15748182 original size:25 final size:26
Alignment explanation
Indices: 15748135--15748186 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
15748125 CCGGTCCGAT
*
15748135 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
*
15748161 CTTAGAGTGGG-ATGAACACCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
15748186 C
1 C
15748187 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 14 0.58
26 10 0.42
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGTATG
Found at i:15752540 original size:26 final size:26
Alignment explanation
Indices: 15752501--15752553 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15752491 CCAGTCTGAT
*
15752501 CTTAGACTGAGAATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
15752527 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
15752553 C
1 C
15752554 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:15753429 original size:26 final size:26
Alignment explanation
Indices: 15753393--15753445 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15753383 CCAATCTGAT
15753393 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
15753419 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15753445 C
1 C
15753446 CTCAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15754333 original size:26 final size:26
Alignment explanation
Indices: 15754297--15754349 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15754287 CCGATCCGAT
15754297 CTTAGACTGGGAATGAACACCATATG
1 CTTAGACTGGGAATGAACACCATATG
* *
15754323 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACACCATATG
15754349 C
1 C
15754350 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCATATG
Found at i:15754995 original size:25 final size:26
Alignment explanation
Indices: 15754961--15755012 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15754951 CCGATCCAAT
15754961 CTTAGACT-GGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
* *
15754986 CTTAGACTGGGAATGAATTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
15755012 C
1 C
15755013 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.27, C:0.13, G:0.25, T:0.35
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:15758324 original size:26 final size:26
Alignment explanation
Indices: 15758288--15758341 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
15758278 TGGGTTGACT
15758288 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
15758314 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
15758340 TA
1 TA
15758342 TGATCGGACC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:15759678 original size:874 final size:878
Alignment explanation
Indices: 15756856--15764046 Score: 7987
Period size: 874 Copynumber: 8.1 Consensus size: 878
15756846 NNNNNNNNNN
* *
15756856 GCCATTAAAGTGTCTGAAATGGGGAAAC-TTTTTCAGATGGTCACAAAATCTTGTACACTTCGAG
1 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
15756920 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAAGG-TCACGTCTACCAAGTTT-GG
66 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC-AAGGATCACGTCTACCAAGTTTGGG
*
15756983 GCCAGAAACTCCTTTCGAAAAAA-TTT-AAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGA
130 GCCA-AAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGA
15757046 AAAATAGAAAACGAGTCGTCTTGCCATGAAAC-TCACGTGAAGGCTTAA-GG-CCATTGTATGAA
194 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * * *
15757108 TTTACAAGCCATAAATATGCCATTCGCATGCAGAAATATGAAGATGTGGCTAAACCCACCTACCA
259 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
*
15757173 CCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG---GCCCGCCCG--CC
324 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCC
* * * *
15757233 CGCTCGTTTCATC-GTTGGCTTAGGCATACGGAGTTCGTTCCCAGTCTAAGATTGCACCGGAACC
389 CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACC
** * * ** * *
15757297 GAGGGTTGTGGCAGC-AGGATCGGCAGCA--CATAGTGGAGGATCGGGTCGAT-CCGGGCTTGCG
453 GAGGGTTACGGCAGCAAGGATCGGCAGCATGCAGAG-GG-GGACCCAGACGATCCCCGGCTTGCG
* * ** * *
15757358 CCATCCCGCCCCTCTGGCCGCCTGA-TACCCGCACGCTCATTTCGTTGGTTGACTTAGGCATAC-
516 -CACCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * * * * * * * * *
15757421 GA-ATCATGCCCAGTCTAAG-AT-CAGACCGGAACGAGGATTGCA-CGCAGCACATACT-GGTTC
580 GAGTTCATTCCCAGTCTAAGCATACGGATCGGACCGAGGGTTG-ATGGCAGCAGATGCTGGGCTC
* * ** *
15757481 -GGCATGTGCT-GTGCTTGTATTTTTTCTTCACCGGGGCACCATCGCCGGACAGCTATCGTCGGA
644 GGGCATGTGCTGGTGC-CGCA-TTTTTCTTCGTCGGGGCACCATCGCC--AGAGC-ATCGTCGGA
* * *
15757544 GCACCCTGACCGGCGGCATTGAAGG-TCCTG-CGATCGGAGGGTGCCGGGGGGTGTGCGCAGATG
704 G-AACCTGACCGGCGGCATTG-GGGTTCC-GACGATCGG-GGG-GCCGGGGGGTGTGCGCACATG
* *
15757607 ATGTGGCGAT-GGTGC-GGTACTTGGCCCCTTATATTGGCCCC-TCATTCCTCATCAAACCTCGG
764 ATGT-GCGATGGGTGCTGGTACTTCG-CCCTTATATTGGCCCCAT-ATCCCTCATCAAACCTC-G
* * *
15757669 AGAACTCACCCACCCCCTGAAAGCGGCATTTGAGAGTTTTACAGGTTTGTTGCCAGTA
825 AGAACTCA--CACCCCCTTAAAG-AGCATTTGAGA-TTTTACAGGTTTGCTGCCAGTA
* *
15757727 GCCATTAAAGTGTCTGGAATAGGGGACACTTTTTTCAAATGGGTCACAAGTATCTTGCTACACTT
1 GCCATTAAAGTGTCTGAAAT-GGGGACACTTTTTTCAAAT-GGTCACAA-AATCTTG-TACACTT
* *
15757792 CAAG--TTTAGCTGAATTTTTTTATGCATGCCAA-AAAAATACAA-GATCACGTCTACCAAGTTT
62 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* ** *
15757853 GGGTG--AAAACTCCTTCCGAAAAAATTTTAAAAAATCTCAAACCATAAAAAGTTTCAAAAATCG
127 GGG-GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCA
* * *
15757916 TGAAAAAAAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTAT
191 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * ***
15757981 GAATATACAAGCCATAAAAATGGCACTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTA
256 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * *
15758046 CCACCCTATTGATCCACGGCTTGCGCAACCCGTCTCTCTGGCCGGCGTAGT----GCCCGCCCG-
321 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGC
* * * *
15758106 -CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTATGATTGGACCAAA
386 CCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA
* * ** * * ** * **
15758170 CCGAGGGTTCCAGCAGC-AGGATCAACAACACGCAGAGGGGGACCGGGCCGATCCCCATCTTGCG
451 CCGAGGGTTACGGCAGCAAGGATCGGCAGCATGCAGAGGGGGACCCAGACGATCCCCGGCTTGCG
* * * * *
15758234 CATCCCC-CCCCACAGGCTGGCTGAGCGCCCGCACGCTCGTTTCTTGGGTTGACTTAAGCATACG
516 CA-CCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
15758298 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTATGATCGGACCGGACCAAGGGT
580 GAGTTCATTCCCAGTCTAAG----C--A--T-A----C-G-----GATCGGACC-G----AGGGT
* * * *
15758363 TG-CGACAGCACATGCTGGGGTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT
621 TGATGGCAGCAGATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT
* * * * *
15758427 CGTCGGAGTATCG-CTGGAGAACCTGACCGGCAGCATTGGGGTT-CTAGCGATCGGGGGGGCCGG
686 CGCCAGAGCATCGTC-GGAGAACCTGACCGGCGGCATTGGGGTTCCGA-CGATC-GGGGGGCCGG
* * * * *
15758490 GGGGTGTGCCCAAATGAT-TGCGATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
748 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTCGCCCTTATATTGGCCCCATATCCCT
* * * *
15758554 CATGAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTACCAGT
813 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
15758619 A
878 A
** *
15758620 GCCATTACGGTGTCTGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
1 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * * *
15758685 TTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCATGCCTACCAAGTTTGAGG
66 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
** * * * *
15758750 TAAAAAATCCTTCCGAAAAAATTTTTAAAAATCCCAAACCCCAAAAATTTTCAAAAATCATGAAA
131 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAA
15758815 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
196 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
*
15758880 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATATGCCTAAACCCACCTACCACC
261 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * *
15758945 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTACCCG-CCGCCCGCCCCCG
326 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCCCG
* **
15759009 CTCGTTTCATCGGTTGGCTTACGCATGTGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAG
391 CTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAG
* * *
15759074 GGTTACGGCAGCAAGG-TTGGCAGCATGCAG-GGGGGACCCAGACGATCCCCAGCTTGTGCACCC
456 GGTTACGGCAGCAAGGATCGGCAGCATGCAGAGGGGGACCCAGACGATCCCCGGCTTGCGCACCC
* * *
15759137 CGCCCCTCTGGCCGGCTGAACGCCCGCACGCTCGTATCGTGGGTTGACTTA-GCATACGAAGTTC
521 CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* *
15759201 ATTCCCAGTCTAAG-AT-CGGATCGGACCGAGGGTTG-TGGCCGTAGATGCTGGGCTCGGGCATG
586 ATTCCCAGTCTAAGCATACGGATCGGACCGAGGGTTGATGGCAGCAGATGCTGGGCTCGGGCATG
* * * * * *
15759263 TGCTGTTGTCACATTTTTCTTCGTCAGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGG
651 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGTCGGAGAACCTGACCGG
* * * * *
15759328 CGGCATTGGGGTTTCGACAATCGGGGTGGCCGGGTGGGGTGTGCGCCCATGATGTACAATGGGTG
716 CGGCATTGGGGTTCCGACGATCGGGG-GGCC-GG-GGGGTGTGCGCACATGATGTGCGATGGGTG
* *
15759393 CTGGTACTTCACCCTTATATTGGCCCCATATCCCTTATCAAACCTCGAGAACTCACACCCCCTTA
778 CTGGTACTTCGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
*
15759458 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGCA
843 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* *
15759494 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCGCAAAATCTTGTACACTTTGAG
1 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* *
15759559 TTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGG
66 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * * * *
15759624 CCAAAAATTCTTCC-AAAAAATTTAAAAAAAATCCCGAATCGCAAAAAGTTTCAAAAATCATGAA
131 CCAAAACTCCTTCCGAAAAAATTT-TAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAA
*
15759688 AAATACAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
195 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* *** *
15759753 TTACAAGCCACAAAAATGGCATTTTTATGCAGAAATATGAAGATGTGCCTAAAGCCACCTACCAC
260 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* *
15759818 CCTATCGATCTACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCTCCCGC
325 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCC-GCC-C
* *
15759883 CCGCTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACC
388 CCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACC
* * ** * * * * *
15759948 AAGGGTTGCGATAG-TAGGATCGCCAGCATGCAGAGTGGGACCCGGCCGATCCCCGGCTTGCGCA
453 GAGGGTTACGGCAGCAAGGATCGGCAGCATGCAGAGGGGGACCCAGACGATCCCCGGCTTGCGCA
* * * *
15760012 TCCCACCCCTCTGGCCGGCTAAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
518 CCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
* ** **
15760077 TTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATTAGATTGGACCGAGGATTGC
583 TTCATTCCCAGTCTAAGCATA-CG-G---A-T--C-G-----GA-CCGA--GG---GTTGA-TG-
* * * * * *
15760142 GACAGCACAGGCTGGGCTCGGGAATGTGCTGGGGCCGCATTTTTCTTCGTTGGGGCACCATCGTC
626 G-CAGCAGATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCC
* * * * *
15760207 AGAGCATCGTCGAAGAACCTGACCGACGGCATTTGGGTTCCGATGATCGAGGGGGTCGGGGGGAG
690 AGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGGG-C---CGG-G
* * * *
15760272 GGGTGTGTGCACATGATGTGTGATGGGTACTGGTACTTGGCCCTTATATTGGCCCC-TA-CTCCT
749 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTCGCCCTTATATTGGCCCCATATC-CCT
* * *
15760335 CATCAAACCTTGAGAACTCACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGT
813 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
15760400 A
878 A
* * * * *
15760401 GCCATTAAAGTATCTGAAATGGGGATACTTTTCTCAAATGGTCACAAAATCTTG-AGCACTTTGG
1 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA-CACTTCGA
* * * *
15760465 GTTTCTAGCTGAATTTTTTTGTGCAGGCCAAAAAAAATACCAGGATCACGTCTACCAAGTTTGGG
65 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* ***
15760530 GCCGAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTCAAAAATCATGAA
130 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAA
*
15760595 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT-AAGTCTTAAGGGACCATTGTATGAAT
195 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
*
15760659 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATATGCCTAAACCCACCTACCAC
260 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * *
15760724 CCTATCGATCCATGGCTTGCGCATCTCGTCTCTCTGGCCGATGTAGTGCCCGCCCGCCTG--CCC
325 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCCC
* * ** * * * *
15760787 GTTCGTTTCATCGATTGGCTTAGGCATGTGGAGTTCATTCCCAGTGTAAGATCGGATCGGACCAA
390 GCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGA
* * * * *
15760852 GCGTTACGGCAGCAA-GATTGGCAGCATGTA-AGGTGGACCCAGACGATCCCCGGCTTGTGCACC
455 GGGTTACGGCAGCAAGGATCGGCAGCATGCAGAGGGGGACCCAGACGATCCCCGGCTTGCGCACC
* * * *
15760915 CCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTATCGTGGCTTGACTTAGGCATACAGAGTT
520 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* * *
15760980 CATTCCCAGTCTAAG-AT-CAGACCGGACCGAGGGTTG-TGGCAGCAGATGCTGGGCTCGTGCAT
585 CATTCCCAGTCTAAGCATACGGATCGGACCGAGGGTTGATGGCAGCAGATGCTGGGCTCGGGCAT
* * ** *
15761042 GTGCT-GTTCTCGCATTTTTCTTTGTCAAGGCACCATCACCAGAGCATCG-CAGGAGAACCTGAC
650 GTGCTGGTGC-CGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGTC-GGAGAACCTGAC
* * * * * * * *
15761105 CGACGGTATTAGGGTTCCGACGATCGGGGTGGCTGGGTGGGGCGTGCACCCATGATGTACGATGG
713 CGGCGGCATTGGGGTTCCGACGATCGGGG-GGC-CGG-GGGGTGTGCGCACATGATGTGCGATGG
* *
15761170 GTGCTGGTACTTCACCCTTATATTGGCCCCATATCCCTCATCAAACCTCAAGAACTCACACCCCC
775 GTGCTGGTACTTCGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCGAGAACTCACACCCCC
*
15761235 TTAAAGAGCATTTGATATTTTACAGGTTTGCTGCCAGTA
840 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
*
15761274 GCCATTAAAGTGTCTGAAATGGTGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
1 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* *
15761339 TTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGATTGGGG
66 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG-TTTGGG
* ** * ** ** *
15761404 GCCAAAACTCCTTCC-AAAAATATTCTAAAAAATCCTGAATCATAAAAAGTTTTGAAAATCGTGA
130 GCCAAAACTCCTTCCGAAAAA-ATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGA
*
15761468 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGTCTTAAGGGACCATTGTATGAA
194 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
**
15761533 TTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCA
259 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * **
15761598 CCCTATCGATCCACGGCTTGTGCATCCCGTCTCTTTGGCCGGCGTAGTGCCCGCCCGTCCATCCA
324 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG-CCCGCC-
* * * * * * *
15761663 CCCACTCATTTCGTCGGTTGGCTTAGGCATACGTAGTTTATTCCCAGTCTAACATCGGATCAGAC
387 CCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
* * * * * ** * ** * * *
15761728 CGAGGGTTGCAGCAG-TAGGATTGGTAGCACACAGAGGGGGACTCAGTTGATCCCCAGTTTACGC
452 CGAGGGTTACGGCAGCAAGGATCGGCAGCATGCAGAGGGGGACCCAGACGATCCCCGGCTTGCGC
* * * * ** * *
15761792 ATCCCGTCCCTCTGACCAGCTGAGCGCGTGCACGCTCGTTTTGTGGGTTGACTTAGGCATATGGA
517 ACCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * ** * * *
15761857 GTTCATTCCCAGTCTAAGCATACGGAGT-TGATTCCCAGTCTAAGCAT-ACAGACTTGATTCCCA
582 GTTCATTCCCAGTCTAAGCATACGGA-TCGGA--CCGAGGGT-TG-ATGGCAG-C-AGA-T----
* ** * * ** **
15761920 ATCTAAGATCGGACCAGACCGAGGGTTATGGCTGCACATGC-TGGTCTCGGGCTT-GTGCTGGTG
635 -GCTGGGCTCGG----G--C-A-TGTGCTGG-TGC-C--GCAT--T-T--TTCTTCGT-C-GG-G
* * * * * * * *
15761983 CCGTATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACAGGCAGCATTG
679 --GCA----CCATCGCC--AG-AGCAT---C-GT-------CGGAGAACCTGACCGGCGGCATTG
* *
15762048 GGGTTCC-AGCGATCGGGGGGGCCGGGGGGTGTGCGCAAATGATGTGCGATGGGTGCTGGTGCTT
724 GGGTTCCGA-CGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* * *
15762112 -GCCCTTATATTGGCCCCCTATCCCTCATGAAACCTTGAGAACTCACACCCCCTTAAAGAGCATT
787 CGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
*
15762176 TGAGATTTTACAGGTTTGCTACCAGTA
852 TGAGATTTTACAGGTTTGCTGCCAGTA
*
15762203 GCCATTAAGGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
1 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
*
15762268 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGG
66 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
** * *
15762333 CCAAAACTCCTTCCGAAAAAATTTT-AAAAATCCCAAACCATAAAAAGTTTAAAAAATTATGAAA
131 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAA
* * *
15762397 AATAGAAAACGGGTCCTCTTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
196 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
*
15762462 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATATGCCTAAACCCACCTACCACC
261 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * *
15762527 CTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGATGTAGTGCCCGCCTG-CC-CACCCG
326 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCCCG
* ** * * * * *
15762590 TTCGTTTCATCGGTTGGCTTAGGCATGTGGAGTTCATTCCTAGTGTAAGATCGGATCGGACCAAG
391 CTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAG
* * *
15762655 GGTTATGGCAGCAA-GATTGGCAGCATGCAG-GGGGGACCCAGACGATCCCCGGCTTGTGCACCC
456 GGTTACGGCAGCAAGGATCGGCAGCATGCAGAGGGGGACCCAGACGATCCCCGGCTTGCGCACCC
* *
15762718 CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTATCGTGGCTTGACTTAGGCATACGGAGTTC
521 CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* *
15762783 ATTCCCAGTCTAAG-AT-CAGACCGGACCGAGGGTTG-TGGCAGCAGATGCTGGGCTCGGGCATG
586 ATTCCCAGTCTAAGCATACGGATCGGACCGAGGGTTGATGGCAGCAGATGCTGGGCTCGGGCATG
* * * * *
15762845 TGCTGTTGTCGCATTTTTCTTTGTCAGGGCACCATCACCAGAGCATCG-CAGGAGAACCTGACCG
651 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGTC-GGAGAACCTGACCG
* * * * * * * *
15762909 ACGGTATTAGGGTTCCGACGATCGGGGTGGCTGGGTGGGGCGTGCACCCATGATGTACGATGGGT
715 GCGGCATTGGGGTTCCGACGATCGGGG-GGC-CGG-GGGGTGTGCGCACATGATGTGCGATGGGT
* *
15762974 GCTGGTACTTCACCCTTATATTGGCCCCATATCCCTCATCAAACCTCAAGAACTCACACCCCCTT
777 GCTGGTACTTCGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
*
15763039 AAAGAGCATTTGATATTTTACAGGTTTGCTGCCAGTA
842 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
*
15763076 GCCATTAAAGTGTCTGAAATGGTGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
1 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* *
15763141 TTTTTAGCTGAATTGTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
66 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
** * * * * *
15763206 CCAAAACTCCTTTTGAAAAAATTTTTAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAA
131 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAA
* * *
15763271 AATAGAAATCCCGAGTCATCTTGCGATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
196 AATAGAAA--ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
** * *
15763336 TTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATCTACCTAAACCCACCTACCA
259 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * *
15763401 CCCTATCGATCCACGGCTTACGCATTCCGTCTCTCTGGCCGGCGTAGTTCCCGCCCGCCCGCCCG
324 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAG-T---GCCCGCCCG--C-
* * * * *
15763466 CCGCCCGTCCGCTAGTTTCATCGGTTGGCTTAGGTATACGTAGTTCATTCCCAATCTAAGATCGA
382 CCGCCC--CCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* * * ** *
15763531 ATCGGACCGAGGGTTATGGCAGCAA-GATCGGCAGCATGCAGAGTTGGACCC-GATCGATCCTCG
445 ACCAGACCGAGGGTTACGGCAGCAAGGATCGGCAGCATGCAGAGGGGGACCCAGA-CGATCCCCG
* * * *
15763594 ACTTGCGCATCCAGCCCCTCTGGCCGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGG
509 GCTTGCGCACCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* *
15763659 CATA-GGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTGTAAGATCAGACTGGATT
574 CATACGGAGTTCATTCCCAGTCTAAGCATACG--G---A-T--C---G---GA-CCGA--GGGTT
* * * ** * * *
15763723 GAGGGATGCGATAGCACATACTGGGCTCGGGCATGTGCTGGCACCACATTTTTCTTCGCCGAGGC
622 ----GATG-G-CAGCAGATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
* * * *
15763788 ACCATCACCAGAGCATCGTCGGAGAACTTGACCTGCGGGATTGGGGTTCCGACGATCGGGGGGCC
681 ACCATCGCCAGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCC
* * * *
15763853 GGGGGGTGCGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCGTTATATTGGCCCCCTATCC
746 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTCGCCCTTATATTGGCCCCATATCC
* * *
15763918 CTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGTATTTGAGATTTTACAGGTTTGCCGCCA
811 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
15763983 GTA
876 GTA
* * * *
15763986 GCCGTTAAAGTGTCTTAAATGGGAACACTTTTTTCAAATGGTCACAAAAACTTGTACACTT
1 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
15764047 TTTTCAAATG
Statistics
Matches: 5386, Mismatches: 684, Indels: 461
0.82 0.10 0.07
Matches are distributed among these distances:
869 5 0.00
870 37 0.01
871 146 0.03
872 119 0.02
873 519 0.10
874 633 0.12
875 320 0.06
876 379 0.07
877 93 0.02
878 90 0.02
879 103 0.02
880 103 0.02
881 7 0.00
882 10 0.00
883 1 0.00
884 14 0.00
885 6 0.00
886 4 0.00
887 113 0.02
888 84 0.02
889 13 0.00
890 10 0.00
891 39 0.01
892 33 0.01
893 58 0.01
894 239 0.04
895 15 0.00
896 4 0.00
897 54 0.01
898 109 0.02
899 124 0.02
900 39 0.01
901 114 0.02
902 85 0.02
903 16 0.00
904 41 0.01
905 109 0.02
906 154 0.03
907 268 0.05
908 68 0.01
909 2 0.00
910 180 0.03
911 4 0.00
912 5 0.00
913 97 0.02
914 5 0.00
915 2 0.00
916 3 0.00
917 1 0.00
918 10 0.00
920 6 0.00
921 6 0.00
922 95 0.02
923 77 0.01
924 3 0.00
925 2 0.00
927 204 0.04
928 24 0.00
929 208 0.04
930 33 0.01
931 3 0.00
932 33 0.01
933 5 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (878 bp):
GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAA
AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCCCG
CTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAG
GGTTACGGCAGCAAGGATCGGCAGCATGCAGAGGGGGACCCAGACGATCCCCGGCTTGCGCACCC
CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
ATTCCCAGTCTAAGCATACGGATCGGACCGAGGGTTGATGGCAGCAGATGCTGGGCTCGGGCATG
TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGTCGGAGAACCTGACCGG
CGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
GTACTTCGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
Found at i:15760096 original size:26 final size:26
Alignment explanation
Indices: 15760067--15760119 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15760057 GTTGACTTAG
15760067 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15760093 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15760119 G
1 G
15760120 ATTAGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15761884 original size:26 final size:26
Alignment explanation
Indices: 15761848--15761926 Score: 113
Period size: 26 Copynumber: 3.0 Consensus size: 26
15761838 GTTGACTTAG
* *
15761848 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTGATTCCCAGTCTAA
15761874 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACGGAGTTGATTCCCAGTCTAA
* * *
15761900 GCATACAGACTTGATTCCCAATCTAA
1 GCATACGGAGTTGATTCCCAGTCTAA
15761926 G
1 G
15761927 ATCGGACCAG
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTGATTCCCAGTCTAA
Found at i:15765226 original size:61 final size:61
Alignment explanation
Indices: 15765161--15765283 Score: 174
Period size: 61 Copynumber: 2.0 Consensus size: 61
15765151 CCTGATCGAC
* *
15765161 GGCATTGGGGTTCCGACAATCGGGGGGGCCGGGGGGTGTGTGCACATGATGTGTGATCGGT
1 GGCATTGGGGTTCCGACAATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATCGGT
** * * * *
15765222 GGCATTGGGGTTTTGGCGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGT
1 GGCATTGGGGTTCCGACAATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATCGGT
15765283 G
1 G
15765284 CTAGTACTTG
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
61 54 1.00
ACGTcount: A:0.11, C:0.15, G:0.50, T:0.24
Consensus pattern (61 bp):
GGCATTGGGGTTCCGACAATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATCGGT
Found at i:15766870 original size:26 final size:26
Alignment explanation
Indices: 15766833--15766885 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15766823 GTTGACTTAG
*
15766833 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15766859 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15766885 G
1 G
15766886 ATCGCTCGTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15767213 original size:861 final size:863
Alignment explanation
Indices: 15765218--15767568 Score: 3434
Period size: 882 Copynumber: 2.7 Consensus size: 863
15765208 GATGTGTGAT
*
15765218 CGGTGGCATTGGGGTTTTGGCGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGT
1 CGGTGGCATTGGGGTTTCGGCGATC-GGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGT
* * * *
15765283 GCTAGTACTTGGCCCTTATAGTGGCCCCTTATCTCTCATCAAACCTCGAGAACTCAAACCCCCTT
65 GCTGGTACTTGGCCCTTATATTGGCCCC-TATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * * *
15765348 GAAGAGCATTTGAGATTTTATAGGTTTGTTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACAC
129 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
**
15765413 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTGTGCACAC
194 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGC
* *
15765478 CAACAAAAATACAAGGATCACGTCTACCACGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAA
258 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* * * *
15765543 AAAATCCCAAACCGCAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCGTCTTGCCATTA
323 AAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * *
15765608 AACTCCAT-GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATTGGCA
388 AACTTCATCGTGAATGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
*
15765672 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGC-TAGCGCATCT
453 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTA-CGCATCT
* * *
15765736 CATCTCTCTGGCTGGCGTAATGCCCGCCCGCCTGCCCGTCCGCTCGCTCGTTTCATCGGTTGGCT
517 CGTCTCTCTGGCCGGCGT-A-G--TG-CC-CC-GCCCG-CC-C-CGCTCGTTTCATCGGTTGGCT
* * * * *
15765801 TAGGCATGCGGAGTTTATTCCCA-TCTAAGATTAGATCAGATCGAGGGTTGTGGCAGCAGGATCG
572 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCAGGATCG
* * * *
15765865 GCAGCACGCAGTGGGGGACCCGATCGATCCCTGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAG
637 GCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * *
15765930 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCGTACGGAGTTCATTCCCAGTCTAAGATCGGA
702 CGCCCGCACGCTCGTTTCGTGCGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAA
* * * **
15765995 TTGGACCGAGGGTTACGGCAGCACGTTCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCG
767 TT-G--CGA--GTTACGCCAGCAAGATC--GGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCG
*
15766060 TCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGAC
825 TCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGAC
* * * *
15766099 CGGTGGCATTAGGGTTTCGGCAATCGGGGGGGCTGAGGGGGTGTGCGCACATGATATGCGATGGG
1 CGGTGGCATTGGGGTTTCGGCGATCGGGGGGTC-G-GGGGGTGTGCGCACATGATGTGCGATGGG
*
15766164 TGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCGAGAACTCACTCCCCCT
64 TGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
*
15766229 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGAGACA
128 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * *
15766294 CTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTAAATGTTTTTGTGCATGC
193 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
*
15766359 CAACAAAAACACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
258 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* *
15766424 AAAATCTCGAACCGAAAAAACTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
323 AAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
15766489 AACTTCATCGTGAATGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
388 AACTTCATCGTGAATGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
*
15766554 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTACGCATCTC
453 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCTC
* * **
15766619 GTCTCTCTAGCCGGCGTAGTG-CCCGCCCG-CCCGCTCGTTTCGTCTATTGGCTTAGGCATACGG
518 GTCTCTCTGGCCGGCGTAGTGCCCCGCCCGCCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGG
* * * * * * *
15766682 AGTTCACTCCTAGTCTAAGATCAGACCAGA-CTGAGGGTTGCGGTAGCGGGATCGGCAGGATGGA
583 AGTTCATTCCCAGTCTAAGATCAGACCAGATC-GAGGGTTGCGGCAGCAGGATCGGCAGCACGCA
* *
15766746 GAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCGCGCGCACG
647 GAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
15766811 CTCGTTTCGTGCGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTT-C-A-
712 CTCGTTTCGTGCGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-CGAA-TTGCGAG
*
15766873 TT-C-CCAGTCTAAGATC-GCTCGTGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCAT
774 TTACGCCAG-C-AAGATCGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCAT
*
15766935 CGCCGGAGCATCGCCGGAGAACCTGAC
837 CGCCGGAGCATCACCGGAGAACCTGAC
*
15766962 CGGTGGCATTGGGGTTCCGGCGATCGCGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGT
1 CGGTGGCATTGGGGTTTCGGCGATCG-GGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGT
* * *
15767027 GCTGGCACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAATCTCGAGAACTCACACCTCCTTA
65 GCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* *
15767092 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAAAGGGGACACT
130 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
*
15767157 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGTATGCCA
195 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
** * *
15767222 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGTTCCTAAACTCCTTCCAAAAAAATTTTAAAA
260 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
** * *
15767287 AAT-TCTGAACCGCAAAAAGTTTTGAATATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAA
325 AATCTC-GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* *
15767351 ACTTCA-CGTGATTGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
389 ACTTCATCGTGAATGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * *
15767415 GCAGAAATATGAAGATGTGCCTAAAACCACCTACCACCCTATCGATCCACGACTTGCGCATCTCG
454 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCTCG
*
15767480 TCTCTTTGGCCGGCGTAGTGCTCACCCGCCCGCACACCCGCTCGTTTCATCGGTTGGCTTAGGCA
519 TCTCTCTGGCCGGCGTAGTG--C-CCCGCCCG--C-CCCGCTCGTTTCATCGGTTGGCTTAGGCA
*
15767545 TACGGAGCTCATTCCCAGTCTAAG
578 TACGGAGTTCATTCCCAGTCTAAG
15767569 CATACGGAGT
Statistics
Matches: 1337, Mismatches: 111, Indels: 57
0.89 0.07 0.04
Matches are distributed among these distances:
860 137 0.10
861 282 0.21
862 52 0.04
863 92 0.07
864 17 0.01
865 2 0.00
866 6 0.00
868 47 0.04
869 1 0.00
870 39 0.03
871 148 0.11
872 3 0.00
873 3 0.00
874 7 0.01
875 2 0.00
876 1 0.00
878 1 0.00
880 8 0.01
881 164 0.12
882 319 0.24
883 6 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (863 bp):
CGGTGGCATTGGGGTTTCGGCGATCGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
CTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
ATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
TTCATCGTGAATGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCTCGTC
TCTCTGGCCGGCGTAGTGCCCCGCCCGCCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGT
TCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGG
GGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
TTTCGTGCGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAATTGCGAGTTACGCC
AGCAAGATCGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGC
ATCACCGGAGAACCTGAC
Found at i:15767571 original size:26 final size:26
Alignment explanation
Indices: 15767542--15767594 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15767532 GTTGGCTTAG
15767542 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
*
15767568 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
15767594 G
1 G
15767595 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:15768462 original size:26 final size:26
Alignment explanation
Indices: 15768433--15768485 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15768423 GATGACTTAG
*
15768433 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
*
15768459 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
15768485 G
1 G
15768486 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAAGTCTAA
Found at i:15769826 original size:735 final size:738
Alignment explanation
Indices: 15768410--15769935 Score: 2246
Period size: 735 Copynumber: 2.1 Consensus size: 738
15768400 CCGGCCGCAT
* * * * *
15768410 GCTCGTTTCGTGGGATGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATT
1 GCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATT
*
15768475 CCAAGTCTAAGATCGAACCGGATCGAGGGTTTACGACAGCACATGCTGGGCTCGGGCATGTGCTG
66 CCAAGTCTAAGATCGAACCAGATCGAGGGTTTACGACAGCACATGCTGGGCTCGGGCATGTGCTG
* ***
15768540 GTGCGTATTTTTATTCGTTGGGGCACCATCGCCGGAGCATCACCGAGAACCTGACCGATGGCAAT
131 GTGCATATTTTTATTCACCGGGGCACCATCGCCGGAGCA-CACCGAGAACCTG--CGATGGCAAT
* *
15768605 TGGGGTTCCGACGATCGGGGGACCCGGGGGGTGTGCGCACATGATGTGCGATGGTGCTGGTCTTG
193 TGGGGTTCCGACGATCGGGGGACCCGGGGGGTATGCGCACATGATGTGCGATGGTGCTGGTCATG
* * *
15768670 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGATAACTCACACCCCCTTAAAGAACATTT
258 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAACAATT
* *
15768735 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAAT
323 GAGATTTTACAGGTATGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
*
15768800 GGTCACAAAATCTTGTACACCTTGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAAAAAATGCA
388 GGTCACAAAATCTTGTACACCTTGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAAAAAATACA
** *
15768865 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCAAACC
453 AGGATCACGTCTACCAAGTTTGGCACCAAAAATCCTTCCAAAAAAATTTTAAAAAATCTCAAACC
**
15768930 ATAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAA
518 ATAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAA
**
15768995 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAA
583 GGCTTAAGAAACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAA
* * * * * *
15769060 GTTGTGCCTAAAACCACCTGCCACCCTATCGATCCACGACTTGCGCATCTCGTCTCTTTGGCCGG
648 GATGTGCCTAAAACCACCTACCACCCTATCGATCCAAGACTTCCACATCCCGTCTCTTTGGCCGG
*
15769125 CGTAGTGCTCACCCGCCCGCACACCC
713 CGTAGTGCCCACCCGCCCGCACACCC
* **
15769151 GCTCGTTTCATCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATT
1 GCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATT
* * * *
15769216 CCCAGTCTAAGATCGAATCAGATCGAGGG-TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
66 CCAAGTCTAAGATCGAACCAGATCGAGGGTTTACGACAGCACATGCTGGGCTCGGGCATGTGCTG
* * * *
15769280 GTGTCATTTTTTTCTTCACCGGGGCACCATCGCCGGAG-A-ACC-TG-A-TTG-G-TGGC-ATTG
131 GTG-CATATTTTTATTCACCGGGGCACCATCGCCGGAGCACACCGAGAACCTGCGATGGCAATTG
* * * *
15769337 GGGTTTCGGCGATCGGGGGGGCCGGGGGGGTATGCGCACATGATGTGCGATGGGTGCTGGTACAT
195 GGGTTCCGACGATC-GGGGGACCCGGGGGGTATGCGCACATGATGTGCGAT-GGTGCTGGT-CAT
* *
15769402 GGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCAAGAACTCACACCCCCCTTAAAGAGCAA
257 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA-CCCCCTTAAAGAACAA
* *
15769467 TTGAGATTTTACAGGTATGCTGCCAGTAGCCATTAAAGTGTCTGAACTGTGGACACTTTTTTCAA
321 TTGAGATTTTACAGGTATGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
*
15769532 ATGGTCACAAAATCTTGTACA-CTTCGAGTTTTTAGCTGAAT-TTTGTTTTGCATGCCAACAAAA
386 ATGGTCACAAAATCTTGTACACCTT-GAGTTTTTAGCTGAATGTTT-TTGTGCATGCCAA-AAAA
*
15769595 ATACAAGGATCACGTCTACCAAGTTTGGCACCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTC
448 ATACAAGGATCACGTCTACCAAGTTTGGCACCAAAAATCCTTCCAAAAAAATTTTAAAAAATCTC
* * *
15769660 GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCAC
513 AAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCAC
* *
15769725 GTGAAGGCTTAAGAAACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAAT
578 GTGAAGGCTTAAGAAACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAAT
* *
15769790 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTCCACATCCCGTCTCTTTG
643 ATGAAGATGTGCCTAAAACCACCTACCACCCTATCGATCCAAGACTTCCACATCCCGTCTCTTTG
* * * * * * *
15769855 GCCTGCGTATTTCCCGCTCGCCCGCCCGCCC
708 GCCGGCGTAGTGCCCACCCGCCCGCACACCC
* * *
15769886 GCTTGTTTCGTCGGTTGGCTTAGGCATACAGAATTTATTCCCAGTCTAAG
1 GCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAG
15769936 ATCCGATCGG
Statistics
Matches: 704, Mismatches: 73, Indels: 22
0.88 0.09 0.03
Matches are distributed among these distances:
730 16 0.02
731 37 0.05
732 10 0.01
733 53 0.08
734 124 0.18
735 311 0.44
736 1 0.00
737 1 0.00
738 3 0.00
740 37 0.05
741 111 0.16
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.27
Consensus pattern (738 bp):
GCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATT
CCAAGTCTAAGATCGAACCAGATCGAGGGTTTACGACAGCACATGCTGGGCTCGGGCATGTGCTG
GTGCATATTTTTATTCACCGGGGCACCATCGCCGGAGCACACCGAGAACCTGCGATGGCAATTGG
GGTTCCGACGATCGGGGGACCCGGGGGGTATGCGCACATGATGTGCGATGGTGCTGGTCATGGCC
CTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAACAATTGAG
ATTTTACAGGTATGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
CACAAAATCTTGTACACCTTGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAAAAAATACAAGG
ATCACGTCTACCAAGTTTGGCACCAAAAATCCTTCCAAAAAAATTTTAAAAAATCTCAAACCATA
AAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
TTAAGAAACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGAT
GTGCCTAAAACCACCTACCACCCTATCGATCCAAGACTTCCACATCCCGTCTCTTTGGCCGGCGT
AGTGCCCACCCGCCCGCACACCC
Found at i:15770104 original size:26 final size:26
Alignment explanation
Indices: 15770068--15770120 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15770058 GTTGACTTAG
15770068 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15770094 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15770120 G
1 G
15770121 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15771580 original size:26 final size:26
Alignment explanation
Indices: 15771544--15771596 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15771534 CTTAACTTAG
15771544 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15771570 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15771596 G
1 G
15771597 ATCGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15772495 original size:26 final size:26
Alignment explanation
Indices: 15772444--15772496 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15772434 GTTGACTTAG
*
15772444 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAACCTAA
* *
15772470 GCATACGGAGTTCATTCCTAGCCTAA
1 GCATACGGAGTTCATTCCCAACCTAA
15772496 G
1 G
15772497 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAACCTAA
Found at i:15773540 original size:26 final size:26
Alignment explanation
Indices: 15773504--15773556 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15773494 GTTGACTTAG
*
15773504 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
15773530 GCATACGGAGTTCAATCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
15773556 G
1 G
15773557 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAGTCTAA
Found at i:15774159 original size:893 final size:890
Alignment explanation
Indices: 15772629--15774516 Score: 2594
Period size: 893 Copynumber: 2.1 Consensus size: 890
15772619 GTTGACTTAG
* * * * * * **
15772629 GCATACAGAGTTCATTCCCCGTCTAAGGTCAGACCAGACCGAGGGTTACGGCTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAACACATGCTGGG
* * * *
15772694 CTCAGGCATATGCTGGTGCCGTATTTTTCTTTATCGGGGCACCATCACCGAAGCATCGTCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCAT--CC--AG-A-CG-CAGAGA
* * *
15772759 ACCTGATCGACGGCATTGAGGTTCTGACAATCGGGGGGCCGGGGGGTGTGCACGCATGATGTGCG
124 ACCTGACCGACGACATTGAGGTTCTGACAATCGGGGGGCCGGGGGGTGTGCACACATGATGTGCG
* ** * * **
15772824 ATGGGTCCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAATCCTAGAGAACTGACAC
189 ATGGGTCCTGGTACTTGACCCTTATATCAGCCCCCTATCCCTCATCAAACCTAGAAAACCCACAC
* *
15772889 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCGGTAGCCATTAAAGTGTCTGAAATAG
254 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATAG
**
15772954 GGCTACTTTTTTCTCATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTATGC
319 GGCTACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTATGC
* * * *
15773019 ATGCAAACAAAAATAGAAGGATCACATCTACCGAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
384 ATGCAAACAAAAATACAAGGACCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAAT
* * ** *
15773084 TTAAGAAATCTCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
449 TTAAAAAATCCCAAACCCCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
15773149 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
514 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * *
15773214 GCATGCAGAAATATGAAGATGTTCCTAAACCCACCTACCACCCAATCGATCCACGGCTTGCGCAT
579 GCACGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCAAGCGATCCACGGCTTGCGCAT
* *
15773279 CCCGTCTCTCTGGCCAGCGTAGTGCCCGCCTGCCCACCCGCCCGCTCGTTTCATCGGTTGGCTTA
644 CCCGTCTCTCTGGCCAGCGTAGTG--C-CC-ACCCACCCGCCCGCTCGTTTCATCGATTGGCTTA
* * * * * *
15773344 GGCATACGAAGTTCATTC-CTAGTCTAAGATCGGACCGGATCGAGGGTTACGGTAGCAAGATCGG
705 GCCATACGAAGTTCATTCTC-AATCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAAGATCGA
* ** * * *
15773408 TAGCGTGCAGAGGGGGACCCGATCGATCCCCGGCTTGCCCATCCCGCCCCTCTAGCTTG-CTGAG
769 CAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTACCCATCCCGCCCCTCTAGC-CGACTGAG
* * * *
15773472 CGCCCGTACACTCGTTTCGCGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
833 CACCCGCACACTCATTCCGCGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
15773530 GCATACGGAGTTCAATCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAACACATGCTTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAACACATGCTGGG
*
15773595 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT-C-G-C-CAGAGAACCTGAC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCCAGACGCAGAGAACCTGAC
* * * *
15773656 CGACGACATT-AGGGTT-TCGGCGATCGGAGGGGCCGAGGGGGTGTGCGCACATGATGTTCGATG
131 CGACGACATTGA-GGTTCT-GACAATCGG-GGGGCCG-GGGGGTGTGCACACATGATGTGCGATG
*
15773719 GGTGCC-GGTACTTGACCCTTATATCAGCCCCCTATCCCTCATCAAACCTCGAAAACCCACACCC
192 GGT-CCTGGTACTTGACCCTTATATCAGCCCCCTATCCCTCATCAAACCTAGAAAACCCACACCC
*
15773783 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGG
256 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATAGGG
* *
15773848 AC-ACTTTTTTCAAATGGTTACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGC
321 -CTACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTATGC
* *
15773912 ATGCCAACAAAAATACAAGGACCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAAAAAA
384 ATGCAAACAAAAATACAAGGACCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCG-AAAAAAA
15773976 TTTAAAAAATCCCAAACCCCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
448 TTTAAAAAATCCCAAACCCCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
15774041 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
513 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * *
15774106 GGCACGTC-GAGATATGAAGATGTACCTAAACCCACCTACCACCCTAGCGATCCACTGCTTGCGC
578 GGCACG-CAGAAATATGAAGATGTACCTAAACCCACCTACCACCCAAGCGATCCACGGCTTGCGC
* * * ** *
15774170 ATCCCGTCTCTCTGGCCGGTGTAGTGCCCACCCGCCCTTCCGTTCGTTTCATCGATTGGCTTAGC
642 ATCCCGTCTCTCTGGCCAGCGTAGTGCCCACCCACCCGCCCGCTCGTTTCATCGATTGGCTTAGC
* * * * ** * *
15774235 CATATGGAGTTCATTCTCAATCTAAGATTGGATCAGACCGAGGGTTGTGGCAGTAGGATCGACAG
707 CATACGAAGTTCATTCTCAATCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAAGATCGACAG
* * * * *
15774300 CACGTAGAGGGGGACCCGGTCGATCCCCGACTTACGCATCCCGCCCCTTTGGCCGACTGAGCACC
772 CACGCAGAGGGGGACCCGATCGATCCCCGACTTACCCATCCCGCCCCTCTAGCCGACTGAGCACC
* *
15774365 CGCACGCTCATTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
837 CGCACACTCATTCCGCGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
15774419 GCATACGAAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAACACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAACACATGCTGGG
* * **
15774484 CTCGAGCATGTGCTGGTACTACATTTTTCTTCA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCA
15774517 CCAGGCCACC
Statistics
Matches: 872, Mismatches: 104, Indels: 34
0.86 0.10 0.03
Matches are distributed among these distances:
888 1 0.00
889 269 0.31
890 35 0.04
891 8 0.01
892 191 0.22
893 271 0.31
894 1 0.00
895 1 0.00
898 1 0.00
901 94 0.11
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.25
Consensus pattern (890 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAACACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCCAGACGCAGAGAACCTGAC
CGACGACATTGAGGTTCTGACAATCGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTC
CTGGTACTTGACCCTTATATCAGCCCCCTATCCCTCATCAAACCTAGAAAACCCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATAGGGCTACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTATGCATGCAAA
CAAAAATACAAGGACCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAATTTAAAAA
ATCCCAAACCCCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
GAAATATGAAGATGTACCTAAACCCACCTACCACCCAAGCGATCCACGGCTTGCGCATCCCGTCT
CTCTGGCCAGCGTAGTGCCCACCCACCCGCCCGCTCGTTTCATCGATTGGCTTAGCCATACGAAG
TTCATTCTCAATCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAAGATCGACAGCACGCAGAG
GGGGACCCGATCGATCCCCGACTTACCCATCCCGCCCCTCTAGCCGACTGAGCACCCGCACACTC
ATTCCGCGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:15774430 original size:26 final size:26
Alignment explanation
Indices: 15774393--15774445 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15774383 GTTGACTTAG
*
15774393 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15774419 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15774445 G
1 G
15774446 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15776124 original size:26 final size:26
Alignment explanation
Indices: 15776074--15776126 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15776064 GTTGCCTTAG
**
15776074 GCATATGGAGTTCATTCCCCGTCTAA
1 GCATATGGAGTTCATTCCCAATCTAA
*
15776100 GCATATGGAGTTCATTTCCAATCTAA
1 GCATATGGAGTTCATTCCCAATCTAA
15776126 G
1 G
15776127 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAATCTAA
Found at i:15777508 original size:26 final size:26
Alignment explanation
Indices: 15777478--15777530 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15777468 GTTGACTTAG
15777478 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15777504 GCATACGGGGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15777530 G
1 G
15777531 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15778540 original size:47 final size:47
Alignment explanation
Indices: 15778471--15778560 Score: 171
Period size: 47 Copynumber: 1.9 Consensus size: 47
15778461 GTCCAACATT
*
15778471 GGACTGGGCCGAGGGTTACGATAGCAGGATCGGCACCAGGCAGAGGG
1 GGACTGGGCCGAGGGTTACGATAGCAGGATCGGCACCACGCAGAGGG
15778518 GGACTGGGCCGAGGGTTACGATAGCAGGATCGGCACCACGCAG
1 GGACTGGGCCGAGGGTTACGATAGCAGGATCGGCACCACGCAG
15778561 GTCGATTGAG
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 42 1.00
ACGTcount: A:0.23, C:0.23, G:0.42, T:0.11
Consensus pattern (47 bp):
GGACTGGGCCGAGGGTTACGATAGCAGGATCGGCACCACGCAGAGGG
Found at i:15779528 original size:26 final size:26
Alignment explanation
Indices: 15779499--15779551 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15779489 GTTGACTTAG
* *
15779499 GCATACGGAGTTCATTCCTAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
15779525 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
15779551 G
1 G
15779552 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:15781139 original size:15 final size:15
Alignment explanation
Indices: 15781119--15781150 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
15781109 ATAGCACGCA
*
15781119 GAGGGGGACTCGGTC
1 GAGGGGGACCCGGTC
15781134 GAGGGGGACCCGGTC
1 GAGGGGGACCCGGTC
15781149 GA
1 GA
15781151 TCCCTGGCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.16, C:0.22, G:0.53, T:0.09
Consensus pattern (15 bp):
GAGGGGGACCCGGTC
Found at i:15782973 original size:26 final size:26
Alignment explanation
Indices: 15782937--15782989 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15782927 GTTGACTTAG
*
15782937 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
15782963 GCATACAGAGTTCATTGCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15782989 G
1 G
15782990 ATTGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15784078 original size:897 final size:887
Alignment explanation
Indices: 15782075--15784513 Score: 3256
Period size: 897 Copynumber: 2.7 Consensus size: 887
15782065 AGGCACACGG
* **
15782075 AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGATCGAACA
1 AGTTCATTCCCAGTCTAAGATCGGA-CGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCA
** * *
15782140 TGTGCTGGCACCGCATTTTTCTTCGCTGGGACACCATCGCCGGAGCATCGTCGAAGAACCTGACT
65 TGTGCTGGTGCCGCATTTTTCTTCGC-GGGGCACCAT---C--AGC-TCG--G-AGAACCTGACC
* * * * *
15782205 GATAGCATTGCGGATCCGGCGATCGGGGGGGCCGA-GGGGGTGTGCGCACATGATGTGCGATTGG
120 GACAGCATTGGGGTTCCGACGATC-GGGGGGCCGAGGGGGGTGTGCACACATGATGTGCGA-TGG
* *
15782269 TGCTGGTACTTGGCCC--TT----CTATTGGCCCCCTATCCCTCATCAAACCACAAGAACTCACA
183 TGCTGGTACTTGGCCCTATTGGCCCTATTGGCCCCC-AT-CCTCATCAAACCTCGAGAACTCACA
*
15782328 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACTTGTAGCCATTAAAGTGTCTGAAATG
246 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTTGTAGCCATTAAAGTGTCTGAAATG
* *
15782393 GGGACACTTTATTCAAATGGTCACAAAATCTTGTACACTTCT-AGTTTTTAGCTGAACATTTTTG
311 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT-TGAGTTTTTAGCTGAATATTTTTG
*
15782457 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
375 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAA
* * * *
15782522 AGTTTAAAAAATCCCAAACCGTAAAAAGTTTCGAAAATCTTGAAAAATAGAAAACTAGTCGTCTT
440 ATTTTAAAAAATCCCAAACCGCAAAAA-TTTTGAAAATCTTGAAAAATAGAAAACGAGTCGTCTT
* * **
15782587 GCCATGAAACTTCACATGAAGGCTTAAGTGACCATTGTATGAATTTACAAGAGATAAAAATGGCA
504 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
15782652 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCTACCTACCACCCTATCGATCCACGGCTTGCG
569 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
15782717 CATCTAGTCTCTTTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCATCAGTTGGCTTACACAT
634 CATCCAGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCATCAGTTGGCTTACACAT
* * * * * *
15782782 ACTGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGGCAATAGGATCGGTAGCAT
699 ACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGATACGGCAACAAGATCGGCAGCAC
* ** * * * *
15782847 GCAGAGGGGGACTCGGTCGATCCCTGGCTTTTGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGC
764 GCAGAGGGGGACCCGACCGATCCCTGGCTTGTGCATCCCACCCCTCTGGCTGGCTGAACGCACGC
* * * * *
15782912 ACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAG
829 ACGCTCGTTTCATGGGTTGAATTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACAA
* * ** * *
15782971 AGTTCATTGCCAGTCTAAGATTGGACTGGACCGAGGGTTGTGGTAGCACATGTTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGAC-GGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCA
** *
15783036 TGTGCTGGTGCCGCATTTTTCTTCGCCAAGGCACCATCGTCGAAGCATCGTCGGGGAACCTGACC
65 TGTGCTGGTGCCGCATTTTTCTTCG-CGGGGCACCA---TC--AG---C-TCGGAGAACCTGACC
* * * *
15783101 GGCGGCATTGGGGTTCCGACGATCGGGGGGCCCG-GAGGGGGTGTACACACATGATGTGCAATGG
120 GACAGCATTGGGGTTCCGACGATCGGGGGG-CCGAG-GGGGGTGTGCACACATGATGTGCGAT-G
* *
15783165 GTGCAGGTACTTGGCCC--TT----ATATTGGCCCCCAATCACTCATCAAACCTCGAGAACTCAC
182 GTGCTGGTACTTGGCCCTATTGGCCCTATTGGCCCCC-ATC-CTCATCAAACCTCGAGAACTCAC
** *
15783224 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
245 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTTGTAGCCATTAAAGTGTCTGAAAT
*
15783289 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATGTTTTTG
310 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATATTTTTG
*
15783354 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAA
375 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAA
* *
15783419 ATTTTAAAAAATCCCAAACTGCAAAACATTTTGAAAATCTTGAAAAATAGAAAACGAGTCGCCTT
440 ATTTTAAAAAATCCCAAACCGCAAAA-ATTTTGAAAATCTTGAAAAATAGAAAACGAGTCGTCTT
*
15783484 GCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
504 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
15783549 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGTTTACG
569 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * **
15783614 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCTTTTCGTCGGTTGGTTTAGGCAT
634 CATCCAGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCATCAGTTGGCTTACACAT
* ** ** * * * *
15783679 ACAGAGTTCATTCCCTGTCTAAGATCAGACTGGACTGAGTGATGCGGCAGCAAGATTGGCAGCAC
699 ACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGATACGGCAACAAGATCGGCAGCAC
*
15783744 GCAGAGGGGGACCCTACCGAT-CCTCGGCTTGTGCATCCCACCCCTCTGGCTGGCTGAACGCACG
764 GCAGAGGGGGACCCGACCGATCCCT-GGCTTGTGCATCCCACCCCTCTGGCTGGCTGAACGCACG
*
15783808 CACGCTCGTTTCATGGGTTGAATTAGGCATATGAAGTTCATTCCCAGTCTAAGCATACAA
828 CACGCTCGTTTCATGGGTTGAATTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACAA
*
15783868 AGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGA-CGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCA
*
15783933 TGTGCTAGTGCCGCATTTTTCTTCGTCGGGGCACCATC-GC-CGGAGAACCTGACCGACAGCATT
65 TGTGCTGGTGCCGCATTTTTCTTCG-CGGGGCACCATCAGCTCGGAGAACCTGACCGACAGCATT
* *
15783996 GGGGTTCTGCCGATCGGGGGGCCGAGGGGGGTGTGCACACATGATGTGCGATGGTTGCTGGTACT
129 GGGGTTCCGACGATCGGGGGGCCGAGGGGGGTGTGCACACATGATGTGCGATGG-TGCTGGTACT
* *
15784061 TGGCCC--TT----ATATTGGCCCCTATCTCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
193 TGGCCCTATTGGCCCTATTGGCCCCCATC-CTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
15784120 AGCATTTGAGATTTTACAGGTTTGCTGCTTGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
257 AGCATTTGAGATTTTACAGGTTTGCTGCTTGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * * * *
15784185 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTG-ATTTTTTTTTGCACGCCAACA
322 TTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATATTTTTGTGCATGCCAACA
* * * * *
15784249 AAAATACAAGGACCACATCTACCAGGTTTGGGGCCAAAAAACCTTCTGAAAAAATTTTAAAAAAT
387 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAAT
** * * * *
15784314 TTCGAACCGCAAAAAGTTTGAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTT
452 CCCAAACCGCAAAAATTTTG-AAAATCTTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * * **
15784379 CACGTGAAGTCTTAA-GGACCATTGTATAAATTTACAAGCCAGAAAAATGGCATTGGCACATAGA
516 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGA
* *
15784443 AATATGAGGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCT
581 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCAGTCTCT
15784508 CTGGCC
646 CTGGCC
15784514 CACTCGTTTC
Statistics
Matches: 1375, Mismatches: 148, Indels: 54
0.87 0.09 0.03
Matches are distributed among these distances:
882 116 0.08
883 141 0.10
884 143 0.10
885 55 0.04
886 40 0.03
888 1 0.00
891 1 0.00
894 2 0.00
895 7 0.01
896 123 0.09
897 739 0.54
898 2 0.00
899 5 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (887 bp):
AGTTCATTCCCAGTCTAAGATCGGACGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCAT
GTGCTGGTGCCGCATTTTTCTTCGCGGGGCACCATCAGCTCGGAGAACCTGACCGACAGCATTGG
GGTTCCGACGATCGGGGGGCCGAGGGGGGTGTGCACACATGATGTGCGATGGTGCTGGTACTTGG
CCCTATTGGCCCTATTGGCCCCCATCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
TTTGAGATTTTACAGGTTTGCTGCTTGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
AATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATATTTTTGTGCATGCCAACAAAAA
TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCA
AACCGCAAAAATTTTGAAAATCTTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATAT
GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCAGTCTCTCTGGC
CGGCGTAGTGCCCGCCCGCCCGCTCGTTTCATCAGTTGGCTTACACATACAGAGTTCATTCCCAG
TCTAAGATCAGACCAGACCAAGGGATACGGCAACAAGATCGGCAGCACGCAGAGGGGGACCCGAC
CGATCCCTGGCTTGTGCATCCCACCCCTCTGGCTGGCTGAACGCACGCACGCTCGTTTCATGGGT
TGAATTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACAA
Found at i:15787058 original size:26 final size:26
Alignment explanation
Indices: 15787028--15787080 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15787018 GTTGACTTAG
*
15787028 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
15787054 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
15787080 G
1 G
15787081 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:15787616 original size:910 final size:899
Alignment explanation
Indices: 15785248--15787742 Score: 2844
Period size: 910 Copynumber: 2.8 Consensus size: 899
15785238 GTTGGCTTAG
* * *
15785248 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGACAGCAGATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGACAGCACATACTGGG
* * * * *
15785313 CTCGGGCATGGGCTGGTGCTG--CA-TTTTTCTTCGTCGGGGCACCATCTTCGGAGCATCGCCAG
66 CTTGGGC-TGGGCTTGTGCTGTCCAGTTTTTCTTC--C-GGGCACCATC-GCGGAGCATCGTCGG
* * * *
15785375 AGAACCTGACCGGTGGCGTTAGGGTTCCGACGATC-GAGGGGGCCGGGGGGTGTGCGCACATGAT
126 AGAACCTGACC-GCGGCATTGGGGTTCCGACGATCAGAGGGGGCCGGGGGGTGTGCACACATGAT
* * * *
15785439 ATGTGATGGGTGCTGATGCTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACT
190 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC-TATCCCTCATCAAACCTCGAGAACT
* *
15785504 CACACCCCCTTAAAGAGCATGTGAGATGTTAAAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTA
254 CACACCCCCTTAAAGAGCATGTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTA
15785569 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAGTTTT
319 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTT
* ** * * * *
15785634 TTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTCAAGCCAAAACTCCTTCCGA
383 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTCGGGCCAAAAATTCTTTCAA
* * ** *
15785699 AAAAATTTTAAAAAATCCCGAA-CGTAAAAAGTTTGGAAAATCATGAAAAATAGAAAACGAGTCG
448 AAAAATTTTTAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCG
* *
15785763 TCTTGCCACGAAACTTCACGTTGAAGGCTT-AGGGACCATTGTATGAATTTAGAAGCCATAAAAA
513 TCTTGCCATGAAACTTCACG-TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * * * *
15785827 TGGCAATTCGCATGCAAAAAATATGAAGATGTGGCCTAAACCCACCAACCCAACCTATCGATCCA
577 TGGC-ATTGGCACG-TAGAAATATGAAGATGT-GCCTAAACCCACCTA-CCACCCTATCGATCCA
15785892 TCGGCTT-TGCGTATCCCATCTCTCTGGACCGACGT-GTG--CGCCCGCCGCCTCCGTCGTTCCA
638 -CGGCTTGTGC--ATCCCATCTCTCTGG-CCGACGTAGTGCCCGCCCGCCGCCTCCGTCGTTCCA
* * * * * *
15785953 TCTGTTGGCTACGGCATAGGAGTTCATTCCCCAATCTAAGGATCGGACTAGACCGAGGGTTATGA
699 TCTGTTGGCTACGGCATAAGAGTTCATTCCCCAACCTAAGGATCAGACGAGACAGAGGGTTACGA
* * *
15786018 CAGCAAGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCTCTCT
764 CAGCAAGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTACGCAACCCGCCCCTCT
** * **
15786083 GGCCGACTGAGCGCCTGCACGCTCGTTTCATAAGTTGACTTAGGCATATGGAAATTCATTGTCAG
829 GGCCGACTGAGCGCCCACACGCTCGTTTCATAAGTTGACTTAGGCATACGGAAATTCATTCCCAG
15786148 TCTACA
894 TCTACA
* * * * * *
15786154 GCATAACGAAGTTCATTCCCAGGTCTAAAGATCAGAACCGAACTGA-GGTTGCGACAG--CATAA
1 GCAT-ACGGAGTTCATTCCCA-GTCT-AAGATC-GGACTGGACCGAGGGTTGCGACAGCACATAC
* * * *
15786216 T--GC-TGGGCTGGGATGTTTGCTGGTGCC-GTATTTTCTT-C--G-----TCGAGGCACCATCG
62 TGGGCTTGGGCTGGGCT-TGTGCT-GT-CCAGT-TTTTCTTCCGGGCACCATCGCGG-AGCATCG
* * * * *
15786269 TCGGAGAACCTGACCGCGGCATTGGGGTTCTGGCGATCGGAGCGCCGGGCCAGGGGGTGTACGTA
122 TCGGAGAACCTGACCGCGGCATTGGGGTTCCGACGATCAGAG-G--GGGCCGGGGGGTGT--GCA
* * *
15786334 -AGATGAATGTGCGATGTGGTGCTAGTAC-TGTGCCATCT-TA-T------TAT-CCTCATCAAA
182 CACATG-ATGTGCGATG-GGTGCTGGTACTTG-GCCCT-TATATTGGCCCCTATCCCTCATCAAA
* * * *
15786388 ACTAGAAGAACTCACACCCCCTTAAA-AGCATGTGAGATTTTTACAGGTTTGCTGACAGTTGGGC
243 CCTCG-AGAACTCACACCCCCTTAAAGAGCATGTGAGA-TTTTACAGGTTTGCTGCCAG-T-AGC
15786452 CATTAAAGTGTCTTAAATGGGGACACTTTTTTC-AATGGGTCATCAAAATTCTTTTGTACACTTC
304 CATTAAAGTGTCTTAAATGGGGACACTTTTTTCAAAT-GGTCA-CAAAA-TC--TTGTACACTTC
* *
15786516 GAAGTTTTTAAGACCTGAATTTTTTTGTGCATG-C-AC-CAAATACAAGGATCATGTCTACCAAG
364 G-AGTTTTT-AG--CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * ** * * **
15786578 TTTCGGGCC-AAAACTCCTTCCGAAAAATTTTTAAAAAATATCGAACCGTAAAAATTTTTTAAAA
425 TTTCGGGCCAAAAATTCTTTCAAAAAAATTTTT-AAAAATCTCGAACCGTAAAAAGTTTCAAAAA
*
15786642 TCGTGAAAAATAGAAAAAT-AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
489 TCATGAAAAATAG-AAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
*
15786706 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAACATGAAGATGTGCCTAAACCCA
553 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCA
* *
15786771 CCTACTACCCTATCGATCCACGGCTTGTGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCGC
618 CCTACCACCCTATCGATCCACGGCTTGTGCATCCCATCTCTCTGGCCGACGTAGTGCCCGCCCG-
*** * * *
15786836 CCGCCCTCTCGCTCGTTTTGTC-GATTGGCTGA-GGCATACAGAGTTTATT-TCCAGCCTAA-GA
682 CCG-CCTC-CG-TCGTTCCATCTG-TTGGCT-ACGGCATA-AGAGTTCATTCCCCAACCTAAGGA
* ** * * *
15786897 TCAGACCGA-ACAGAGGGTTGCGGTAGCAAGATCGGTAGCATGCAGAGGGGGACCCGATCGATCC
741 TCAGA-CGAGACAGAGGGTTACGACAGCAAGATCGGCAGCACGCAGAGGGGGACCCGACCGATCC
* * * **
15786961 CCGGCTTACTCAACCCGCCCCTCTGGCCGGCTGAGCGCCCACATGCTCGTTTCATGGGTTGACTT
805 CCGGCTTACGCAACCCGCCCCTCTGGCCGACTGAGCGCCCACACGCTCGTTTCATAAGTTGACTT
*
15787026 AGGCATACGG-AGTTCATTCCCAGTCTA-A
870 AGGCATACGGAAATTCATTCCCAGTCTACA
* * * * *
15787054 GCATATGGAGTTCATTCCCAATCTAAGATCGGACTGGACCAAGGGTTGTGGCAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGACAGCACATACTGGG
15787119 CTTGGGCTTGGGCTTGTGCTAGTACCATGTTTTTCTTCACCAGGGCACCATCGCCGGAGCATCGT
66 CTTGGGC-TGGGCTTGTGCT-GT-CCA-GTTTTTCTT--CC-GGGCACCATCG-CGGAGCATCGT
*
15787184 CGGAGGACCTGACCAGCGGCATTGGGGTTCCGACGATCAG-GGGGGCCGGGGGGTGTGCACACAT
123 CGGAGAACCTGACC-GCGGCATTGGGGTTCCGACGATCAGAGGGGGCCGGGGGGTGTGCACACAT
15787248 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
187 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGA
*
15787313 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-
251 ACTCACACCCCCTTAAAGAGCATGTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * *
15787377 TTGAAAATGGGGACACTTTTTTCAAATGGACACTAAATCTTGTACACTTTGAGTTTTTAGCTGAA
316 TT--AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * * *
15787442 TTTTTTTGTGCTTGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAAATTATT
379 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTCGGGCCAAAAATTCTT
15787507 TCAAAAAAATTTTTAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGA
444 TCAAAAAAATTTTTAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGA
* * *
15787572 GTCCTCTTGCCATGAAACTTCACGTGAAGGCTTAAGCGACCATTGTAAGAATTTACAAGCCATAA
509 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
** *
15787637 AAATGGCATTGGCACGTAGAAATATGAAGATGTATCTAAGCCCACCTACCACCCTATCGATCCAC
574 AAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* *
15787702 GACTTGTGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC
639 GGCTTGTGCATCCCATCTCTCTGGCCGACGTAGTGCCCGCC
15787743 TGCTCGTTTC
Statistics
Matches: 1333, Mismatches: 162, Indels: 184
0.79 0.10 0.11
Matches are distributed among these distances:
895 24 0.02
896 53 0.04
897 57 0.04
898 73 0.05
899 48 0.04
900 24 0.02
901 62 0.05
902 207 0.16
903 155 0.12
904 40 0.03
905 17 0.01
906 11 0.01
907 37 0.03
908 23 0.02
909 49 0.04
910 249 0.19
911 42 0.03
913 5 0.00
914 41 0.03
915 48 0.04
916 45 0.03
917 23 0.02
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (899 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGACAGCACATACTGGG
CTTGGGCTGGGCTTGTGCTGTCCAGTTTTTCTTCCGGGCACCATCGCGGAGCATCGTCGGAGAAC
CTGACCGCGGCATTGGGGTTCCGACGATCAGAGGGGGCCGGGGGGTGTGCACACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
CCTTAAAGAGCATGTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTCGGGCCAAAAATTCTTTCAAAAAAATTT
TTAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATC
CCATCTCTCTGGCCGACGTAGTGCCCGCCCGCCGCCTCCGTCGTTCCATCTGTTGGCTACGGCAT
AAGAGTTCATTCCCCAACCTAAGGATCAGACGAGACAGAGGGTTACGACAGCAAGATCGGCAGCA
CGCAGAGGGGGACCCGACCGATCCCCGGCTTACGCAACCCGCCCCTCTGGCCGACTGAGCGCCCA
CACGCTCGTTTCATAAGTTGACTTAGGCATACGGAAATTCATTCCCAGTCTACA
Found at i:15790123 original size:26 final size:26
Alignment explanation
Indices: 15790087--15790139 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15790077 GTTGACTTAG
15790087 GCATACAGAGTTAATTCCCAGTCTAA
1 GCATACAGAGTTAATTCCCAGTCTAA
*
15790113 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTAATTCCCAGTCTAA
15790139 G
1 G
15790140 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTAATTCCCAGTCTAA
Found at i:15791004 original size:26 final size:26
Alignment explanation
Indices: 15790974--15791027 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
15790964 TGGGTTGACT
15790974 TAGGCATACAGAGTTCATTCCCAGTC
1 TAGGCATACAGAGTTCATTCCCAGTC
*
15791000 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACAGAGTTCATTCCCAGTC
15791026 TA
1 TA
15791028 AGATTGAACT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
TAGGCATACAGAGTTCATTCCCAGTC
Found at i:15791533 original size:891 final size:894
Alignment explanation
Indices: 15789219--15793282 Score: 5143
Period size: 872 Copynumber: 4.6 Consensus size: 894
15789209 GTTGACTTAG
* * * * * *
15789219 GCATACGGAGTTCATTCCCAGTCTAAGA-TCAGACCGAATCGAGGGTTACGGAAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGA-ACTGGACCGAGGGTTGCGGCAGCACATGCTGG
** * * *
15789283 GCTCGAACATGTGCTGGTGTCACATTTTTCTTCACCGGGGCTCCATCGCCGGAGCATCG-CCAAG
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCGAAG
* * * * * * *
15789347 AACCTAATCGGTGGCATTGGGGTT-TCGACGAT--------CGAGGGGGTGTCCACACAAGATGT
130 AACCTGACCGGCGGCATTGGGGTTCT-GACGATCAGGGGGCCGGGGGGGTGTGCGCACATGATGT
* *
15789403 GCGATGGGTGCTGGTACTTGGACCTTATATTGGCCCCCTATCCCTCATCAAAACCTTGAGAACTC
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC-AAACCTCGAGAACTC
* *
15789468 ACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
15789533 ATGGGGACACTTTTTTCAAATGGTTACAAAATCTTGTACACTTCGAGTTTTTAGGTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * *
15789598 TGTGCATACCAAC-AAAATACAAGGATCACATCTACCAACTTTGGGGCCAAAACTCCGTCTGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * * * *
15789662 AATTTTTTAAAAATCTTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACCAGTCGTC
453 AAATTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATC
* * *
15789727 TTGCCATGAAACCTCACGTGAAGGCTTAAGGGGCCATTGTATGAATTTTCAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
15789792 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCTACGGCTTG
583 CATTGGCAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
15789857 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGTCCGCCCACCCGCCCGCTCGTTTCGTCGGTTG
648 CGCATCCCGTCTCTCTGGCCGACGTA-----CGT-CGCCC-GCC-ACCGCTCGTTTCGTCGGTTG
15789922 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCTGCAGCAGGA
705 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC-GCAGCAGGA
* ** * * * *
15789987 TCGGCAGCATGCAGAGGGGGA-TCCGATCAATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGAC
769 TCAGCAGCACACAGAGGGGGACT-CGGTCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCTGGC
* * * *
15790051 TGAGCGCCCGCACGCTTGTTTTGTGCGTTGACTTAGGCATACAGAGTTAATTCCCAGTCTAA
833 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * * *
15790113 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGTGGCAGCACATGGTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGAACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *** * * *
15790178 CCCGAAAATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCTGGAGCATCGTTGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCGAAGA
* * *
15790243 ACCTGACCGACGACATTGGGGTTCCGACGATCAGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCTGACGATCA-GGGGGCCGGGGGGGTGTGCGCACATGATGTG
* *
15790307 CGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCATCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
15790372 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
15790437 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAATTCTAGTTTTTAGCTGAATTTTTTT-
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
15790501 TAGCATGCCAACAGAAATACAAGGATCACGTCTACCAATTTTGGGGCCAAAACGCCTTCTGAAAA
390 T-GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * *
15790566 AATTTTAAAAAATCTTGAACCTCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCT
454 AATTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCT
* * *
15790631 TGCCATGAAACTTGATGTGAAGGCTTAAGGGACCATTGTATGAATTTACGAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * * * *
15790696 TTTGGAAAGTAAAAATATGAAGATTTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTAC
584 ATTGGCAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
15790761 GCATCCTGTCTCTC-GGCCGACGTA-GT-GCCCG-C-CCGCTCATTTCGTCTGTTGGCTTAGGCA
649 GCATCCCGTCTCTCTGGCCGACGTACGTCGCCCGCCACCGCTCGTTTCGTCGGTTGGCTTAGGCA
* *
15790821 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACAGTAGCAGGATCAGCTA-C
714 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC-GCAGCAGGATCAGC-AGC
* *
15790885 ACACAGAGGGGGA-TCCGGTCGATCCTCGGCTTGTGCATCCCGCCCCTATGGCTGGCTGAGCGCC
777 ACACAGAGGGGGACT-CGGTCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCTGGCTGAGCGCC
* * *
15790949 CGCACGCTTGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAG
841 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* **
15791003 GCATACGGAGTTCATTCCCAGTCTAAGATTGAACTGGACCAAGGGTTGCAACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGAACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * ** *
15791068 CTCAGGCATGTACTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTTGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCGAAGA
* *
15791133 ACCTAACCGGCGGCATAGGGGTTCTGACGATCAGGGGGCCGGGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCTGACGATCAGGGGGCC-GGGGGGGTGTGCGCACATGATGTG
* *
15791198 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATGAAACCTCGAGAACTCGC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
15791263 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
15791328 GGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
15791393 TGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAATTCTTTCCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * *
15791458 AGTTTAAAAAATCCCGAACCATAAAAAGTTTCCAAAATCGTGAAAAATAGAAAATGAGTCATCTT
455 ATTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTT
*
15791523 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* ** *
15791588 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCATATACCACCCTATCGATCCACGGCTTGCA
585 TTGGCAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * *
15791653 CATCTCATCTCTCTGGCCGGCGTA-GTGCTTGCCCGCCCACCTGCTCGTTTTGTCTGTTGGCTTT
650 CATCCCGTCTCTCTGGCCGACGTACGT-C--GCCCG-CCACC-GCTCGTTTCGTCGGTTGGCTTA
* * ** ** *
15791717 TGCATACGGAGTTCATCCCCAGTCT-A-ATTTGATCTGGACCAAGGGTTGCGACAGCAGGATCAG
710 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CCAGACCGAGGGTTGCG-CAGCAGGATCAG
** * * * *
15791780 CAGCATGCAGAGGGGGACTCGGTTGATCCCTGGCTTGCGCATTCCGCCCCTCTGGCTGGCTGAGC
773 CAGCACACAGAGGGGGACTCGGTCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCTGGCTGAGC
* * * * * *
15791845 ACCCGGACGCTCGTTTCGTGGGTGGACTTAAGCATACGGAGTTCATTCCCAATCTAA
838 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * *
15791902 G-AT-C--AG---------A--C----------C-GGACCAAGGGTTGCAGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGAACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * **
15791941 CTCGGGCATGTGCTGGTGCCACATTTTTTTTCGTCGGGGCACCATCGCCAGAGCATCACCGAAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCGAAGA
* * * * *
15792006 ACCTGACCGGTGGCATTGGGTTTCTGGCGATCGGGGGGGTCGGGGGGGTGTGCGCACAT-ATGTG
131 ACCTGACCGGCGGCATTGGGGTTCTGACGATC-AGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* *
15792070 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAATCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
15792135 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTAAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
15792200 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTGGAGTTTTTAGCTGAATTTGTTTT
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT-TTTT
* * *
15792265 -TGCATGCCAACAAAAAGACAAGGATCATGTTTA-CAACGTTTGGGGCCAAAACTCCTTCCGAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA-GTTTGGGGCCAAAACTCCTTCCGAAA
* * ** *
15792328 AAATTTTAAAAAATCCCAAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATC
453 AAATTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATC
* *
15792393 TTGCCATTAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
15792458 CATTGGTAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
583 CATTGGCAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
15792523 CGCATCCCGTCTCTCTGGCC-AGCTTA-GTGGCCGCCCGCCCGTCCGCTTGTTTCGTCGGTTGGC
648 CGCATCCCGTCTCTCTGGCCGA-CGTACGT---CGCCCG-CC-ACCGCTCGTTTCGTCGGTTGGC
** * * * * ** * *
15792586 ACAGGCATACAGAGTTCAGTCCCAATCTAAGATCAAACTGGTCCGAGGGTTGTGGCAGCAGGATC
707 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG-CGCAGCAGGATC
* * * * *
15792651 AGCAGCACACAGAGTGGGACTCGGTTGATCCCCGGCTTGTGCTTCCCGCCCCTTTGG-TCGCCTG
771 AGCAGCACACAGAGGGGGACTCGGTCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCT-GGCTG
* * * *
15792715 AGTGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACAAAATTCATTCCCAGTCTAA
835 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * * *
15792775 GCATACAGAGTTCATTCCCAGTCTAAGATTGGA-TCGGACTGAGGGTTACGGTAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGAACT-GGACCGAGGGTTGCGGCAGCACATGCTGG
** * *
15792839 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCAGGGCACCAT---C---GC--CGT---AG
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCGAAG
* * * * * * *
15792893 AACCTGACAGACGACATTGGGGTTCCGACGATCGGGGGGCCCGGGGGGTGTGCGCACATGATGTT
130 AACCTGACCGGCGGCATTGGGGTTCTGACGATCAGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * *
15792958 CGATGGGTGTTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTTAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
15793023 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTAAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
15793088 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGTTGAAGTTTTTTT
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTT
* *
15793153 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * *
15793218 AATTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAAAAAACAAGTCATCT
454 AATTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCT
15793283 AACATCGGAC
Statistics
Matches: 2784, Mismatches: 313, Indels: 151
0.86 0.10 0.05
Matches are distributed among these distances:
871 3 0.00
872 486 0.17
873 262 0.09
874 14 0.01
875 1 0.00
877 2 0.00
884 1 0.00
886 2 0.00
887 24 0.01
888 216 0.08
889 126 0.05
890 332 0.12
891 449 0.16
892 13 0.00
893 2 0.00
894 110 0.04
895 29 0.01
896 8 0.00
897 1 0.00
898 9 0.00
899 194 0.07
900 43 0.02
901 1 0.00
902 156 0.06
903 299 0.11
904 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (894 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATTGAACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCGAAGA
ACCTGACCGGCGGCATTGGGGTTCTGACGATCAGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGACGTACGTCGCCCGCCACCGCTCGTTTCGTCGGTTGGCTTAGGCATA
CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGCAGCAGGATCAGCAGCACAC
AGAGGGGGACTCGGTCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCAC
GCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
Found at i:15792788 original size:26 final size:26
Alignment explanation
Indices: 15792749--15792801 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15792739 GTTGACTTAG
15792749 GCATACAAAATTCATTCCCAGTCTAA
1 GCATACAAAATTCATTCCCAGTCTAA
* *
15792775 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAAAATTCATTCCCAGTCTAA
15792801 G
1 G
15792802 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.34, C:0.26, G:0.13, T:0.26
Consensus pattern (26 bp):
GCATACAAAATTCATTCCCAGTCTAA
Found at i:15793456 original size:26 final size:26
Alignment explanation
Indices: 15793418--15793470 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15793408 GTTGACTTAG
15793418 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
15793444 GCATATGGTGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15793470 G
1 G
15793471 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15794355 original size:26 final size:26
Alignment explanation
Indices: 15794324--15794376 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15794314 GTTGACTGAG
15794324 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
* *
15794350 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
15794376 G
1 G
15794377 ATCAGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:15795261 original size:26 final size:26
Alignment explanation
Indices: 15795232--15795284 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15795222 GTTGACTTAG
*
15795232 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
* *
15795258 GCATACGAAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
15795284 G
1 G
15795285 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:15795700 original size:898 final size:885
Alignment explanation
Indices: 15793280--15797264 Score: 4566
Period size: 898 Copynumber: 4.5 Consensus size: 885
15793270 AAACAAGTCA
* * * ** * *
15793280 TCTAACATCGGACTGGACTGAGGGTTGTGACAGTAGGATCGGCAGCACGCAGAGGGGGACCCTG-
1 TCTAAGATCGGACCGGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCC-GA
* * * * ** *
15793344 TCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCTGGCTGAGCACTTGCACGCTCATTT-AGTGG
65 TCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCAGGCTGAGCGCCCGCACGCTCGTTTCA-TGG
* *
15793408 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGTGTTCATTCCCAGTCTAAGAT
129 GTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATA--GAGTTCATTCCCAGTCTAAGAT
* * * * *
15793473 CGGA-TCGGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGAGCATGTGCTGGTGTCACATTTTT
192 CAGACT-GGACCGAGGGTTAC-GTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
** * * *
15793537 CTTCCCCGAGGCACCAACGCCGGAGCATCGTCGGAGAACCTGACAGACGACATTGGGGTT-TCGA
255 CTTCGTC-AGG--GC-A--CC--ATCA-C--CGGAGAACCTGACTGACGACATTGGGGTTCT-GA
* * *
15793601 TGATCGGGGATGCCGGTGGGGTGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
308 CGATCGGGG-GGCC-G-GGGG-GGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* *
15793666 TATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGGGCATTTGAGAT
369 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
*
15793731 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
434 TTTACAGGTTTGCGGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* * * * *
15793796 CAAAGTCTTGTACAATTCGAGTTTTTAGCTGAATTTTTTTGTGCTTGCCAATAAAAATACAAGGA
499 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGA
**** * * * * *
15793861 TCTTGGCTACCAAGTTTTGGGCCAAAACCCCTTCCGAAAAAA-TTTATAAAAATCTTGAA-CGAT
564 TCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTA-AAAAATCCTGAACCG-C
* **
15793924 AAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAATGTTCACATGAAGG
627 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGG
*
15793989 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT-GTAGAAATATGAAG
692 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATCATAGAAATATGAAG
15794053 ATGTGCCTAAACCCACCTACCACCCTATCGA-TCGACGACTTGCGCATCCCGTCTCTCTGGCC-A
757 ATGTGCCTAAACCCACCTACCACCCTATCGATTC-ACGACTTGCGCATCCCGTCTCTCTGGCCGA
* * * *
15794116 GCATAG--T-G-CCG---GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAATTCATTCCCA
821 -CGTAGCCTAGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
15794174 G
885 G
* * ** * * * ** *
15794175 TCCAAGATCGAACAAGACCGAGGATTATGATC-GCAGGATCGATAGCACACAGCGAGGGACCCGG
1 TCTAAGATCGGACCGGACCGAGGGTTACG-GCAGCAGGATCGGCAGCACGCA--GA-GG----GG
* * * * * *
15794239 CCGATCCTCGATCGATCCCCGGCTAGCGCATCACGCCCCTCTGATCA-GCTGAGTGCCCGCACAC
58 --GA-CC-CGATCGATCCCCAGCTTGCGCATCCCGCCCCTCTG-GCAGGCTGAGCGCCCGCACGC
* * *
15794303 TCGTTTCATTGGTTGACTGAGGCATACAGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCC
118 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATA--GAGTTCATTCC
* * * *
15794368 CAGTCTAAGATCAGATTGGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATTTTCTGGTG
181 CAGTCTAAGATCAGACTGGACCGAGGGTTACG-TAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * * * *
15794433 CCGCATTTTTCTTCGTCGGGGCACCATCCCCGAAGCATCGCAA-CAGAATTTGACCAATGGCATT
245 CCGCATTTTTCTTCGTCAGGGCACCATCACCG--G-A--G-AACCTG-A-CTGA-C---GACATT
* ** * *
15794497 GGGGTTCCGGTGATCGGAGGGGCCGGAGGGGTGTACGCACATGATGTGCGATGGGTGCTCGTACT
298 GGGGTTCTGACGATCGG-GGGGCCGGGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACT
*
15794562 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCAT
362 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
15794627 TTGAGATTTTACAGGTTTG-GTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
427 TTGAGATTTTACAGGTTTGCG-GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* *
15794691 AATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTTTTTTATGCACGCCAACAAAAA
491 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAA
* *
15794756 TACAAGGATCACATCTATCAAGTTTGGGGCCAAAACTCCATCCAAAAAAATTTTAAAAAATCCTG
556 TACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTG
*
15794821 AACCGCCAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACA
621 AACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACA
* *
15794886 TGAAGGCTGAAGGGACCATTGTATGAATTTACAAGCTATAAAAATGGCATTGGC-TCATAGAAAT
686 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATCATAGAAAT
* *
15794950 ATTAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCACGACTTGCGCATCCCGTCTCTCTA
751 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCACGACTTGCGCATCCCGTCTCTCTG
* *
15795015 GCCGACGTAGTGCCTACCCGCCCGCCCGCCCGCCCGCTCCTTTTATCGGTTGGCTTAGGCATACG
816 GCCGACGTA--GCCTA-------GCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACG
*
15795080 GTGTTCATTCCCAG
872 GAGTTCATTCCCAG
* * * * * * * *
15795094 TCTAAGATTGGACCCGTCCGTGGGTTACGGTAGTAGGATCGGCAGCATGCAAAGGGGGACCCGAT
1 TCTAAGATCGGACCGGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGAT
* * *
15795159 CGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCAGACTGAGCGCCCGTACGCTCGTTTCGTGGGT
66 CGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCAGGCTGAGCGCCCGCACGCTCGTTTCATGGGT
*
15795224 TGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGAAGTTCATTCTCAGTCTAAGATCA
131 TGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATA-G-AGTTCATTCCCAGTCTAAGATCA
* * *
15795289 GACTGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTAGTGCCGCATTTTTCTT
194 GACTGGACCGAGGGTTAC-GTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
** * * * * *
15795354 CGTCAGGGCACCATCGTCGGAGAACTTGATTGGCAAAATTGGGGTTCTGACGATCCGGGGGGCCG
258 CGTCAGGGCACCATCACCGGAGAACCTGACTGACGACATTGGGGTTCTGACGAT-CGGGGGGCCG
*** * * * * *
15795419 GGGGGGCTGCGTGCACATAATGTGTGATGAGTGCTGGTACTTGACCCTCATATTGGCCCCCTATC
322 GGGGGG-TGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * *
15795484 CCTCATCAAACCTCGAGAACTCACACCCCCATAAAGAACATTTGAGATTTTACAGGTTTGCGGTC
386 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCGGCC
*
15795549 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTCTTTCAAATGGTCACAAAATCTTGTACACTT
451 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * * *
15795614 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCACCAAAAATACAAGGTTCACATCTGCCAAGTTT
516 CGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTT
* * *
15795679 GGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCCCAAAAAGTTTCAAAAATCGT
581 GGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCAT
* *
15795744 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTTTATG
646 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATG
*
15795809 AATTTACAAGCCATAAAAATGGCATTGGCACGCAT--AAATATGAAGATGTGCCTAAACCCACCT
711 AATTTACAAGCCATAAAAATGGCATTGGCA-TCATAGAAATATGAAGATGTGCCTAAACCCACCT
* ** * * * *
15795872 ACCACTCTATCGATAAACGGCTTACGCATCCCGTCTCTCTGGCCAATGTAGTGCCTA-CCCGCCC
775 ACCACCCTATCGATTCACGACTTGCGCATCCCGTCTCTCTGGCCGACGTA--GCCTAGCCCGCCC
* * * * *
15795936 GCCCGCTCATTTCGTCCGTTGGCTTAGGCATACGGAGTTCATTCCTAA
838 GCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
* * * * * * * **
15795984 TCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAAGATCAGCAGCACACAGAGGGGGACCTGGG
1 TCTAAGATCGGACCGGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGAT
* * * *
15796049 CGATCCTC-GACTTGCGCATCCCGCCCCTCTGG-GGGCCTGAGTGCCCGCACGGTCGTTTCATGG
66 CGATCCCCAG-CTTGCGCATCCCGCCCCTCTGGCAGG-CTGAGCGCCCGCACGCTCGTTTCATGG
15796112 GTTGACTTAGGCATACGGAG-----------T-T---C----A-TTC--T--CAGTCTAAGATCA
129 GTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATAGAGTTCATTCCCAGTCTAAGATCA
* *
15796153 GACCGGACCGAGGGTTACGATAGAACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
194 GACTGGACCGAGGGTTACG-TAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
* * * * * **
15796218 TGTCGGGGCACCATCACCGGAGAACTTTACCGACGACATTGGGGTTCCAACGATCGGGGGGCCGG
258 CGTCAGGGCACCATCACCGGAGAACCTGACTGACGACATTGGGGTTCTGACGATCGGGGGGCCGG
* * * ** * * *
15796283 GGGGCTGTACGCACATAAAGTGTTATGGGTTCTGGTACTTGGCCCTCATATTGGCCCCTTATCCC
323 GGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* * * *
15796348 TCATCAAACCTCAAGAACTCGCACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAG
388 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCGGCCAG
* * **
15796413 TAGCCATTAAAGTGTTTGAAATGGGGACATTTTTTTCAAATCATCACAAAATCTTGTACACTTCG
453 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * *
15796478 AGTTTTTAGCTGAATTTTTTTATGCAAGCCAAAAAAAATACAAGGATCACACCTACCAAGTTTGG
518 AGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGG
*** * * *
15796543 GGCCAAAACTCCTTTTGAAAAAATTTTACAAAATCCTGAACAGCAAAAAGTTTCAAAAATCGTGA
583 GGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGA
* * *
15796608 AAAATAGAAAACGAGCCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
648 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAA
* * *
15796673 TTTACAAGCCATAAAAATGGCATTGGCATGA-AGAAATACGAAGATGTGCCTAAACGCACCTACC
713 TTTACAAGCCATAAAAATGGCATTGGCATCATAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * *
15796737 ACCCTATCGATCCACGACTTGCGCATCCTGTCTCTCTGGCCGGCGTAG--T-GCCCGCCCGCCTG
778 ACCCTATCGATTCACGACTTGCGCATCCCGTCTCTCTGGCCGACGTAGCCTAGCCCGCCCGCCCG
15796799 CTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
843 CTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
* * * * * *
15796842 TCTAAGACCGGACCGGACCGAGGGTTGCAGCAACAGGATCGACAGCACGCAGAGGGGGACCCGAC
1 TCTAAGATCGGACCGGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGAT
* * * * * *
15796907 CGATCCTCAGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGTACGCTCATTTTATGGGT
66 CGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCAGGCTGAGCGCCCGCACGCTCGTTTCATGGGT
*
15796972 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATAG-G---A----CAG-----GA-C---
131 TGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATAGAGTTCATTCCCAGTCTAAGATCAGA
* * * *
15797019 C---A---AGGGTTACGGTAGCACATACTGGGCTCAGGCATGTGCTGGTGCCGTATTTATCTTCG
196 CTGGACCGAGGGTTAC-GTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG
* * *
15797078 TC-GGGACACCATCACCGGAGAACCTGACTGGCGGCATTAGGGTTCTGACGATCGGGGGGGCC-G
260 TCAGGG-CACCATCACCGGAGAACCTGACTGACGACATTGGGGTTCTGACGATC-GGGGGGCCGG
* * *
15797141 CGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCC
323 GGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
*
15797206 TCATCAAACCTCGAGAACTCACACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
388 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
15797265 TGTAACAGGA
Statistics
Matches: 2660, Mismatches: 335, Indels: 227
0.83 0.10 0.07
Matches are distributed among these distances:
857 3 0.00
858 374 0.14
859 12 0.00
860 1 0.00
861 2 0.00
862 442 0.17
863 16 0.01
864 114 0.04
866 1 0.00
867 1 0.00
868 5 0.00
869 2 0.00
870 1 0.00
873 3 0.00
875 1 0.00
878 1 0.00
879 1 0.00
889 2 0.00
890 168 0.06
895 38 0.01
896 1 0.00
897 30 0.01
898 464 0.17
899 1 0.00
900 9 0.00
901 6 0.00
902 9 0.00
903 452 0.17
904 14 0.01
905 9 0.00
906 189 0.07
907 9 0.00
908 189 0.07
909 3 0.00
910 2 0.00
912 2 0.00
915 1 0.00
916 5 0.00
917 1 0.00
919 76 0.03
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (885 bp):
TCTAAGATCGGACCGGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGAT
CGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCAGGCTGAGCGCCCGCACGCTCGTTTCATGGGT
TGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATAGAGTTCATTCCCAGTCTAAGATCAGA
CTGGACCGAGGGTTACGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
CAGGGCACCATCACCGGAGAACCTGACTGACGACATTGGGGTTCTGACGATCGGGGGGCCGGGGG
GGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCGGCCAGTAG
CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
TTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGC
CAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAA
ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTT
ACAAGCCATAAAAATGGCATTGGCATCATAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
CTATCGATTCACGACTTGCGCATCCCGTCTCTCTGGCCGACGTAGCCTAGCCCGCCCGCCCGCTC
GTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
Found at i:15797603 original size:395 final size:395
Alignment explanation
Indices: 15796873--15797664 Score: 1557
Period size: 395 Copynumber: 2.0 Consensus size: 395
15796863 GGGTTGCAGC
15796873 AACAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCTCAGCTTGCGCATCCCGCCCCTCTG
1 AACAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCTCAGCTTGCGCATCCCGCCCCTCTG
15796938 GCCGGTTGAGCGCCCGTACGCTCATTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
66 GCCGGTTGAGCGCCCGTACGCTCATTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
15797003 TAAGATAGGACAGGACCAAGGGTTACGGTAGCACATACTGGGCTCAGGCATGTGCTGGTGCCGTA
131 TAAGATAGGACAGGACCAAGGGTTACGGTAGCACATACTGGGCTCAGGCATGTGCTGGTGCCGTA
15797068 TTTATCTTCGTCGGGACACCATCACCGGAGAACCTGACTGGCGGCATTAGGGTTCTGACGATCGG
196 TTTATCTTCGTCGGGACACCATCACCGGAGAACCTGACTGGCGGCATTAGGGTTCTGACGATCGG
15797133 GGGGGCCGCGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
261 GGGGGCCGCGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
15797198 TCTATCCCTCATCAAACCTCGAGAACTCACACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
326 TCTATCCCTCATCAAACCTCGAGAACTCACACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
15797263 GCTGT
391 GCTGT
* *
15797268 AACAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCTCAGCTTGCGCATCCCGCCCCTCTG
1 AACAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCTCAGCTTGCGCATCCCGCCCCTCTG
15797333 GCCGGTTGAGCGCCCGTACGCTCATTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
66 GCCGGTTGAGCGCCCGTACGCTCATTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
*
15797398 TAAGATAGGACCGGACCAAGGGTTACGGTAGCACATACTGGGCTCAGGCATGTGCTGGTGCCGTA
131 TAAGATAGGACAGGACCAAGGGTTACGGTAGCACATACTGGGCTCAGGCATGTGCTGGTGCCGTA
15797463 TTTATCTTCGTCGGGACACCATCACCGGAGAACCTGACTGGCGGCATTAGGGTTCTGACGATCGG
196 TTTATCTTCGTCGGGACACCATCACCGGAGAACCTGACTGGCGGCATTAGGGTTCTGACGATCGG
15797528 GGGGGCCGCGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
261 GGGGGCCGCGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
15797593 TCTATCCCTCATCAAACCTCGAGAACTCACACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
326 TCTATCCCTCATCAAACCTCGAGAACTCACACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
15797658 GCTGT
391 GCTGT
15797663 AA
1 AA
15797665 GTAGCCATTA
Statistics
Matches: 394, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
395 394 1.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (395 bp):
AACAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCTCAGCTTGCGCATCCCGCCCCTCTG
GCCGGTTGAGCGCCCGTACGCTCATTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
TAAGATAGGACAGGACCAAGGGTTACGGTAGCACATACTGGGCTCAGGCATGTGCTGGTGCCGTA
TTTATCTTCGTCGGGACACCATCACCGGAGAACCTGACTGGCGGCATTAGGGTTCTGACGATCGG
GGGGGCCGCGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
TCTATCCCTCATCAAACCTCGAGAACTCACACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
GCTGT
Found at i:15800051 original size:25 final size:26
Alignment explanation
Indices: 15800014--15800065 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
15800004 GTTGACTTAG
*
15800014 GCATACGGTGTTCA-TCCCACTCTAA
1 GCATACGGGGTTCATTCCCACTCTAA
*
15800039 GCATACGGGGTTCATTCCCAGTCTAA
1 GCATACGGGGTTCATTCCCACTCTAA
15800065 G
1 G
15800066 ATCTGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 13 0.54
26 11 0.46
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGGGTTCATTCCCACTCTAA
Found at i:15802244 original size:875 final size:874
Alignment explanation
Indices: 15797270--15807057 Score: 11160
Period size: 875 Copynumber: 11.2 Consensus size: 874
15797260 TTTGCTGTAA
* *
15797270 CAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCTCAGCTTGCGCATCCCGCCCCTCTGGC
1 CAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * * *
15797335 CGGTTGAGCGCCCGTACGCTCATTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
66 CGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* ** * * *
15797400 AGAT-AGGACCGGACCAAGGGTTACGGTAGCACATACTGGGCTCAGGCATGTGCTGGTGCCGTAT
131 AGATCA-GACCGGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
* * * * *
15797464 TTATCTTCGTC-GGG-A-CA----C----CATCACCGGAGAACCTGACTGGCGGCATTAGGGTTC
195 TTTTCTTCGCCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTC
* *
15797518 TGACGATCGGGGGGGCC-GCGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
260 CGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* *
15797582 TATATTGGCCCTCTATCCCTCATCAAACCTCGAGAACTCACACTCCCTTAAAGAGCATTTGAGAT
324 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
** * *
15797647 TTTACAGGTTTGCTGTAAGTAGCCATTAAAATGTCTGAAATGGGGTCACTTTTTTCAAATGGTCA
389 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* * * *
15797712 CAAAATCTTGTACAATTCAAGTTTTTAGCT-ACGTTTTTTTGTGCATGCCAACAAATATACAAGG
454 CAAAATCTTGTACACTTCGAGTTTTTAGCTGA-ATTTTTTTGTGCATGCCAACAAAAATACAAGG
* ** * * *
15797776 ATCATGTCTACCAAGTTTGGTGTGAAAACTACTTTCGAAAAAATTTTAAAAAATCCAGAACCATA
518 ATCATGTCTACCAAGTTTGGGGCCAAAACT-CCTTCCAAAAAATTTTAAAAAATCC-GAACCGTA
* * * *
15797841 AAAAGTTTCAAAAATCGTGAAAAATGGAAAATGAGTCGTCTTACCATGAAACTTCACGTGAGGGC
581 AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* * * *
15797906 TTAAGGGACCATTGTATGAATTTAAAAGCCAAAAAAATGGCATTGCCATGCAAAAATATGAAGAT
646 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
* * * *
15797971 GTGCCTAAACCCACCTCCCACCCTATCTATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
711 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT
* * *
15798036 AGTG---CCTGCCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCA
776 AGTGCCCCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * * * *
15798098 GTCTAAGATCAGACCAGACCGGGGGTTGCAGTAG
841 GTCTAAGATCGGACCAAACCGAGGGTTGCGGCAG
* ** * * ** * *
15798132 CAGGATCGGTAGCACATAGAGTGGGACCCGGCCGAACCTTGGCTTACGCATCCC-ACCCTGCTGG
1 CAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCT-CTGG
* *
15798196 CCGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGTATACGGATTTCATTCCCAGTCC
65 CCGGCTGAGCGCCCGCACGCTCGTTTC--------A--TGGGT-T---GA---C-TT---AG---
* * * *
15798261 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTCATGGCAGCACATGCTG
106 --GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCACATGCTG
* * * * *
15798326 GGCTCGGGCATGTGCTGGTGCCTCATTTTTCTTCGCCAGGGCACCATCATCGAAGCATCATCGGA
169 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCACCGGA
* *
15798391 GAACCTGACCGGTA-GGCATTGGGGTTTCGACGATCGGGGGGCC-GGGGGGTGTGCACACATGAT
234 GAACCTGACC-G-ACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGAT
* * *
15798454 GTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTAACCCTCATCAAACCTCAAGAACT
297 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * * * *
15798519 CGCACCCCCTTAAAGGGCATTTAAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTGA
362 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * * *
15798584 AATGGGGAAACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTATAGCTGAATTGTT
427 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * **
15798649 TTGTGCATGCCAAAAAAAATACAGGGATCATGTCTACCAAGGTTT-TAGCCAAAACTCCTTCCGA
492 TTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAA-GTTTGGGGCCAAAACTCCTTCC-A
* * *
15798713 AAAAATTTTACAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAAGAGAAAACGATTCG
555 AAAAATTTTAAAAAATC-CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* * *
15798778 TCTTGCCATGAAATTTCACGTGAAGGCTTAAGGGACCATTGTATGAACTTACAATCCATAAAAAT
619 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
15798843 GGCATTGGCACGCAG-AATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACGGCT
684 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * **
15798907 TCCGCATCCCGTCTCTCTGACCGACGTA-TAGCCCGCCCCCCCGCCCGCCCGCTCGTTTCATCAA
749 TGCGCATCCCGTCTCTCTGGCCGGCGTAGT-GCCC-CCCGCCCGCCCGCCCGCTCGTTTCGTCGG
* * * * * *
15798971 TTGCCTTAGGCATACGGAGTTCATTCCCAGTCTAATATCGAACCGAACCGAGGATTGTGGCAG
812 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTGCGGCAG
* * *
15799034 GAGGATCGGCAGCATGCAGAGGGGGACCCGGCCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGC
1 CAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* *
15799099 AGGCTGAGCGCCCGCACGCTCGTTTCATAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
66 CGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * * *
15799164 AGATCGGACCGGACCGAGTGTTATGACAACACATCCTGGGCTCGGGCATATGCTGGTGCCGCATT
131 AGATCAGACCGGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
** *** * ** * *
15799229 TTTCTGAGCCGGGGCACCATTACCGGAGCATCACCGGGGAACCTGACCGGTGGAATTGGGGTTTC
196 TTTCTTCGCCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCC
*
15799294 GACGGTCGGGGAGGCCGGGGGGGTTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
261 GACGATCGGGG-GGCCGGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* *
15799359 TATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTTAGAT
324 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* *
15799424 TTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCA
389 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* ** *
15799489 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGATAACATAAATACAAGGA
454 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* * * *
15799554 TCATGTCTACCAGGTTTGGGGCCAAAATTCTTTCCGAAAAAATTTTAAAAAATCCCGAA-CGACA
519 TCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAATTTTAAAAAAT-CCGAACCG-TA
**
15799618 AAAAGTTTCAAAAATCGAAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
581 AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
*
15799683 TTAAGGGACCAGTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
646 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
*
15799748 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCAT
711 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT
* *
15799813 GGTG---CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTGAGGCATACGGAGTTCATTCCCA
776 AGTGCCCCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * * * *
15799875 GTCTAAGATTGGACCGAACTGACGGTTGCGACAG
841 GTCTAAGATCGGACCAAACCGAGGGTTGCGGCAG
* * * * * * * ** * *
15799909 CAGGGTTGGCAGCATGTAGAGAGGGACCCGG-TGAATCCCTGGCTTATGCATCCCACCCATCTGG
1 CAGGATCGGCAGCACGCAGAGGGGGACCCGGCCG-ATCCCCGGCTTGCGCATCCCGCCCCTCTGG
*
15799973 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGTGTTCATCCCACTCTA
65 CCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC---G--------------
* * *
15800038 AGCATACGGGGTTCATTCCCAGTCTAAGATCTGACCGGCCCAAGGGTTACAGA-AGCACATGCTG
113 -G---A----GTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTAC-GACAGCACATGCTG
* ** *
15800102 GGGTTAGGCATGTGCTGGTGCTGCATTTTTCTTCGCCGGGGCACCATCGT-------T----GGA
169 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCACCGGA
* * * * *
15800156 GAACCTGATCGACGGCATTGGGGTTTCGACAATCGGGTGGG-CGGGGGGCATGTTCGCACATGAT
234 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGG-GGGCCGGGGGG-GTGTGCGCACATGAT
* * * *
15800220 GTGCGATGCGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCTTCATCAAACCTTGAGAACT
297 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * * * *
15800285 CGCA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGCAGCCTTTAAAGGGTCTGA
362 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
15800349 AATGGGCACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTT
427 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * *
15800414 TTGTACATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAACTCCTTCCGAA
492 TTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AA
* * * * *
15800479 AAAATTTTAAAAAATCCTGAACCGCAAAACGTTTTAAAAATCGTGAAATATAAAAAACGAGTCGT
556 AAAATTTTAAAAAATCC-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
15800544 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
620 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * **
15800609 GCATTGGCACGCAAAAATATGAAGATGTGTCTAAACCCACCTACCACCCTATCGATCCGTGGCTT
685 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *** *
15800674 GCGCATCCCGTCTATCTAGCAAACGTAGT-------GCCCGCCCGCCAGCTCGTTTCGTCGGTTG
750 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* ** ** * *
15800732 GCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGTTCGGACCGAGGGTTACGGTAG
815 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTGCGGCAG
* * * * *
15800792 CAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTTGT
1 CAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
** * * *
15800857 CGGCTGATAGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
66 CGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
** * * * ** * * *
15800922 AGATTGGAACAGACCGAGGGTTGCGGTAGCACATGCTGGTCTCGAGCATGTGCTGGTGCCACATT
131 AGATCAGACCGGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
* * ** * * * *
15800987 TTTCTTCGTCGGGGCACCATCGTCGAAGCATCGTCGGAGAACCTAACCGGCAGCATTAGGGTTCC
196 TTTCTTCGCCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCC
* * ** *
15801052 GATGATTGGGGGGCC-TAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGCTACTTGGCCCTTA
261 GACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
*
15801116 TATTGGTCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTT
326 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* * * * * *
15801180 TACAGGTTTCCTGCCAGTAGCAATTAAAGTGTTTAAAATGGGCACACTTTTTTCAAATGGTCCCA
391 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* * *
15801245 AAATCTTGTACACTTCGATTTTTTAGCTTAATTTTTTTGTGCATGCCAACAAAAATAAAAGGATC
456 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
* * *
15801310 ACGTCTACCAAGCTTGGGACCAAAACTCCTTCCGAAAAAATTTTAAAAAATCACGAACCGTAAAA
521 ATGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAATTTTAAAAAATC-CGAACCGTAAAA
* * * *
15801375 AGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCGTGAAACTTCACATGAAGGCTTA
584 AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
* *
15801440 ACGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTA
649 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTG
* * * *
15801505 CCTAAACCCAACTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTTTGGCCGGCGTAGC
714 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT
* ** *
15801570 GCCCACTCGCCCTACCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
779 GCCC-CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* * ***
15801635 CTAAGATTGGACCAAACTGAGGGTTGCAATAG
843 CTAAGATCGGACCAAACCGAGGGTTGCGGCAG
* * * * *
15801667 CAGGATCGGCAGCATGTAGATGGGGACCCGGCCGATCCCTGGCTTGCACATCCCGCCCCTCTGGC
1 CAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * *
15801732 CAGCTGAGCGCCCACACGCTCGTTTCATGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
66 CGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * *
15801797 AGATCAGACCGGATCGAGGGTTACGACAGCAAATGCTGGGCTCGGGCATGTGCTGGTGCCGTATT
131 AGATCAGACCGGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
* * * * * * * * *
15801862 TTTCTTCACCGGGGTACCATC-TCCGGAGCAACGCCAGAGAACTTCACTGGCGGCATTGGGGTTC
196 TTTCTTCGCCGGGGCACCATCGT-CGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTC
* * *
15801926 CGACGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGGCTAGTAC-TGGCCCT
260 CGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGT-GCTGGTACTTGGCCCT
** * **
15801990 TATATTGGCCCTATATCCCTCATCAAACCTTGAGAACTCACTTCCCCTTAAAGAGCATTTGAGAT
324 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* *
15802055 TTTATAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
389 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* *
15802120 CAAAATCTTGTACACTAT-GAG-TTGTAGCTGAATTTTTTTGTGAATGCCAACAAAAATACAAGG
454 CAAAATCTTGTACACT-TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
* *
15802183 ATCATGTCTACCAAGTTTGGGGCCAAAACTCCATCCAAAATAATTTTAACAAATCCGAACCGTAA
518 ATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA-AATTTTAAAAAATCCGAACCGTAA
* * * *
15802248 AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCTCGCCATTAAACTTCACGTGAAGGCT
582 AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
** * *
15802313 TAAGGGATGATTGTATAAATTTACAAGCCA-ACAAAATGGCATTGGCATGTAGAAATATGAAGAT
647 TAAGGGACCATTGTATGAATTTACAAGCCATA-AAAATGGCATTGGCATGCAGAAATATGAAGAT
* * * *
15802377 GTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCACATCCCATCTCTCTGGCAGGCGT
711 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT
* * * * * * *
15802442 AGTGCCCACCCGCCTGCCCGCCCACTCATTTTGTTGATTGCCTTAGGCATACGGAGTTCATTCCC
776 AGTGCCC-CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* **** * * ** *
15802507 AGTCTAAGATCAGATTGGACCAAGAGTCACGGTAG
840 AGTCTAAGATCGGACCAAACCGAGGGTTGCGGCAG
* * * * **
15802542 CAGGATCGACAGCACGGAGAGGGGGACCTGGACGATCCTTGGCTTGCGCATCCCGCCCCTCTGGC
1 CAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * * * ** * *
15802607 CGGTTGAGCACCCGTACGCTCATTTTGTGAGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTA
66 CGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * * * * *
15802672 AGATCGGATCGGACCGAGGGTTGCGGCTGCACATGCTGGGCTCGAGCATGTGTTGGTGTCGCATT
131 AGATCAGACCGGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
* ** * * * * *
15802737 TTTCTTTGCCAAGGCACCATCGCCGAAGCATCACCGGAGAACCTTA-CGAACGGCATTGAGGTTT
196 TTTCTTCGCCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCG-ACGGCATTGGGGTTC
* * **
15802801 CGACGATCGGAGGGGCCAGGGGGGGTGTCCGCACATGATTTATGATGGGTGCTGGTACTTGGCCC
260 CGACGATCGG-GGGGCC-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
15802866 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
323 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* *
15802931 TTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGCACACTTTTTTCAAATGGTC
388 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* *
15802996 ACAAAATCTTGTACACTACGAG-TTGTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
453 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
* * *
15803060 ATCATGTCTACCAAGTTTGGGGCCAAAACTCCATCCAAAATAATTTTAACAAATCCCAAACTC-T
518 ATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA-AATTTTAAAAAAT-CCGAAC-CGT
* * ** * *
15803124 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTTGTCTCACCATTAAACTTCATGTGAAGG
580 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
** * * * *
15803189 CTTAAGGGATGATTGTATAAATTTACAAGCCATAAAAATGGCATTGCCACGTAGAAATATGAAGA
645 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
** * * * * *
15803254 TACGCCGAAACCCACCTGCCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCTGTG
710 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
* ** * * *
15803319 TAGTG-----C-CCC-CTCGCCTTCTCGGTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCC
775 TAGTGCCCCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
15803377 AGTCTAAGAT-----C--A--GA----T-----AG
840 AGTCTAAGATCGGACCAAACCGAGGGTTGCGGCAG
* *
15803394 C---AT-----GCA---A-AGGGAGACTCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTC-GGC
1 CAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * * * * *
15803446 CGGTTGAGGGCTCGGACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTA
66 CGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
** *** * ** * * * *
15803511 AGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGATGCTAGGCTCGAGG-ATGTGCT
131 AG-AT-C--AGACCGGACCGAGGGT--TA-CG-ACAGCA-C-ATGCTGGGCTCG-GGCATGTGCT
* * ** * *
15803575 GCTACCATATTTTTTTTCACCGGGGCACCA---T-----CAT---CGGAGAACCTGACCGACGGC
185 GGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGC
* * *
15803629 ATTGGGATGCCGGA-GATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTTCTGGT
250 ATTGGGGTTCC-GACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* ** * * *
15803693 ACTTGGCCTTTATATTGAACCCCTATCCCTCATCAAACCTTGAGAACACACACCCCCTTAAAGAA
314 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
*
15803758 CATTTGAGATTTTACAGGTTTGCCGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
379 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* *
15803823 CAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAA-TTTTTTGTGCACGCCAACAAA
444 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * * *
15803887 AATACAAGGATCACGTCTACCAACTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAAGCC
509 AATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCAAAAAATTTTAAAAAA-TC
* *
15803952 CGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCA
572 CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* *
15804017 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGCACGCAGAAA
637 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
*
15804082 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCT
702 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * * * * * * *
15804147 GGCCGACCTAGTGCCTGCCCGCCCGCCCGCCCTCTTGTTTTGTCAGTTGGCTTAGGCGTACGAAG
767 GGCCGGCGTAGTGCC-CCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * *
15804212 TTCATTCCCAGTCTAAGATCGCACCAGATCGAGGGTTGCGGCAG
831 TTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTGCGGCAG
* * *
15804256 CAAGATCGGCAGCACGTAGAGAGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
1 CAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * * *
15804321 CGGCTGAGCACCCGCACGCTCGTTTTATGGGTTGACTTAGGCATGCGAAGTTCATTCCCAGTCTA
66 CGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T-
* * * *
15804386 AGCATATGGAGTTCATTCCTAGTCTAAGATCGGACCGAACCGAGTGTTGCGACAGTACATGCTAG
128 --C-TA---AG---------A-TC--AGACCGGACCG-A--G-G-GTTACGACAGCACATGCTGG
* * **
15804451 GTTCGGGCATGTGCTGGTGTCGCATTTTTCTTCATCGGGGCACCAT--T----G-----CCGGAG
170 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCACCGGAG
* * * *
15804505 AACCTGACCGATGGCACTGGGGTTCTGACGATCGGGGGTGCCGGGGGGGTGTACGCACATGATGT
235 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGG-GCCGGGGGGGTGTGCGCACATGATGT
* * *
15804570 GCGGTGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCTCTCATCAAACCTCGAGAACTCA
299 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
15804635 AACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
364 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* ** *
15804700 TGGGGACAGTTTTTTCAAATGGTCACAAAATCTTGTACACCACGAGTTTTTGGCTGAATTTTTTT
429 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
15804765 GTGCATGACAAAAAAAATACAAGGATCACGTCAACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
494 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCAAAA
* * * * * *
15804830 AATTTTAAAAAATTTCAAACTGCAAAAAGTTTCAAAAATCGTGGAAAATAGAAAACGAGTTGTCT
558 AATTTTAAAAAA-TCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
15804895 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGC
622 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
15804960 ATTGGCATGTAGAAATATGATGATATGCCTAAGCCCACCTACCACCCTATCGATCCATGGCTTGC
687 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
15805025 GCATCCCGTCTCTCTGGCCGGCGTAGTG---CCTGCCCGCCCACCCGCTCGTTTCATCGATTGGC
752 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * *
15805087 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-CTCAGACCAAGGGTTACGGCAG
817 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC-CAAACCGAGGGTTGCGGCAG
* ** * *
15805145 CAGGATCGGCAGCATGCAGAGGGGGACCCGATCGATCCCCGGGTAGCGCATCCCGCCCCTCAT-G
1 CAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTC-TGG
* * * *
15805209 TCGACTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCT
65 CCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T
* ** * *
15805274 AAGCATATAGAGTTCATTGCCAGTCTAAGATCGGACCAGATCGAGGGATGTGATAGCACATGCTA
128 ---C-TA-AGA--TCA--G--A--C------CGGA-C----CGAGGGTTACGACAGCACATGCTG
* * * *
15805339 GGCTCGAGCATGTGCTGGTGACGCATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCACCGGA
169 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCACCGGA
* * * * *
15805404 GAACCTGACCGACGGCTTTGTGGTTCTGACGATCGGAGGGGCCGGGCGGGTGTGTGCACATGATG
234 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGG-GGGGCCGGGGGGGTGTGCGCACATGATG
* * *
15805469 TACGATGGGTGCTGGCACTAGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
298 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
15805534 ACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTG-CAGTAGCCATTAAAGTGTCTGAA
363 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
15805598 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TCTGAGTTTTTAGCTGAATTTTT
428 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-GAGTTTTTAGCTGAATTTTT
* * * * * * *
15805662 TTGTCCACGCCAACAAAAATACAAGGATC-TCGTCTACCAATTTTGGGTCGAAAACTACTTTCGA
492 TTGTGCATGCCAACAAAAATACAAGGATCAT-GTCTACCAAGTTTGGGGCCAAAACT-CCTTCCA
*
15805726 AAAAA-TTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAGAATAGAAAACGAGTCG
555 AAAAATTTTAAAAAATCC-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
*
15805790 TCTTGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
619 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * *
15805855 GGCATTGGCACGTAGAAATATGAAGATGTACCTAAATCCACCTACCACCCTATCGATCCACGGCT
684 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * *
15805920 TGCGCATCCTGTCTCTCTAGCCGGTGTAGTGCCCATCCGCCCGCCCGCCCGCCGCGCGCTCGTTT
749 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C--CC-CCCGCCCGCCCG-C-C-CGCTCGTTT
* * * ** *
15805985 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTAGATTGAGGGTTGTG
806 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTGCG
15806050 GCAG
871 GCAG
* * * ***
15806054 CAGGACCAGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTAAT
1 CAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * * **
15806119 CGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTAAGGCATACGGAGTTCATGGCCAGTCTA
66 CGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* ** * * * * *
15806184 AGAT-AGGACCGGACCGAGGGATGTGGCAGCACATGCTAGGCTTGAGCATGTGCTGGTGACGCAT
131 AGATCA-GACCGGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
* * * * *
15806248 TTTTCTTCACCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTAATCGACGGCATTAGGGTTC
195 TTTTCTTCGCCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTC
* *
15806313 CGACGATCGAAGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGCACTTGGCCCT
260 CGACGATCG-GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* * *
15806378 TATATTTGCCCCCTATACTTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
324 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
*
15806443 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCA
389 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* *
15806508 CAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTT-TCCATGCCAACAAAAATACAAGGA
454 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* * * * * * *
15806572 TCACGTCTACCAAGTTTGGTGCCAAAAATACTTCTGAAAAAATTTTAAAAAATCTTGAACCCTAA
519 TCATGTCTACCAAGTTTGGGGCCAAAACTCCTTC-CAAAAAATTTTAAAAAATC-CGAACCGTAA
** * * *
15806637 AAAGTTTTGAAAATTGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCC
582 AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
*
15806702 TAAGGGACCATTGTTTGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
647 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
* * * *
15806767 TGCCTAAACCCACCTACCACCCTA-CTGATCCACGGCTTGTGCATCCCGTCTGTCTAGCCGACGT
712 TGCCTAAACCCACCTACCACCCTATC-GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT
* ** *
15806831 AGTG---CCCGCTCGCCCGCCCGCTCGTTTCGTCAATTGGCTTAGGCATACGGGGTTCATTCCCA
776 AGTGCCCCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * * *
15806893 GTCTAAGATCAGATCGAACCGAGGGTTGTGGCAG
841 GTCTAAGATCGGACCAAACCGAGGGTTGCGGCAG
* * * * *
15806927 CAGGATCGACAGCACGCA-ATGGAGGA-CCAGCCAATCCCCGGCTTGCGCATCCTGCCCCTCTGG
1 CAGGATCGGCAGCACGCAGA-GGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * ** * * * *
15806990 CCGGCTGAGCACCTGCACGCTCGTTTTGTAGGTTGACTTAGGCATACAGAGTTCAATCCTAGTCT
65 CCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
15807055 AAG
130 AAG
15807058 CATACAGAGT
Statistics
Matches: 7661, Mismatches: 991, Indels: 538
0.83 0.11 0.06
Matches are distributed among these distances:
835 1 0.00
836 437 0.06
837 22 0.00
838 29 0.00
839 65 0.01
840 38 0.00
841 5 0.00
842 1 0.00
843 11 0.00
844 54 0.01
846 2 0.00
847 3 0.00
848 1 0.00
849 40 0.01
850 1 0.00
851 1 0.00
852 3 0.00
853 2 0.00
857 2 0.00
858 86 0.01
861 5 0.00
862 76 0.01
863 1 0.00
865 4 0.00
867 445 0.06
868 7 0.00
869 32 0.00
870 52 0.01
871 2 0.00
872 93 0.01
873 89 0.01
874 44 0.01
875 1041 0.14
876 308 0.04
877 386 0.05
878 564 0.07
879 79 0.01
880 5 0.00
881 5 0.00
882 3 0.00
883 460 0.06
884 287 0.04
885 3 0.00
886 2 0.00
887 372 0.05
888 182 0.02
889 293 0.04
890 9 0.00
891 81 0.01
892 211 0.03
893 276 0.04
894 6 0.00
895 3 0.00
896 2 0.00
897 4 0.00
898 276 0.04
899 527 0.07
900 267 0.03
901 5 0.00
902 151 0.02
903 6 0.00
904 1 0.00
906 10 0.00
907 2 0.00
908 2 0.00
909 177 0.02
910 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (874 bp):
CAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
CGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
AGATCAGACCGGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
TTTCTTCGCCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCC
GACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
ATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTAAAAAATCCGAACCGTAAAAAG
TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC
TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC
CCCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
AGATCGGACCAAACCGAGGGTTGCGGCAG
Found at i:15803515 original size:26 final size:26
Alignment explanation
Indices: 15803486--15803538 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15803476 GTTGACTTAG
*
15803486 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15803512 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15803538 G
1 G
15803539 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15805280 original size:26 final size:26
Alignment explanation
Indices: 15805250--15805302 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15805240 GTTGACTTAG
*
15805250 GCATACGGAGTTCATT-CCTAGTCTAA
1 GCATACAGAGTTCATTGCC-AGTCTAA
*
15805276 GCATATAGAGTTCATTGCCAGTCTAA
1 GCATACAGAGTTCATTGCCAGTCTAA
15805302 G
1 G
15805303 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTGCCAGTCTAA
Found at i:15807067 original size:26 final size:26
Alignment explanation
Indices: 15807031--15807086 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
15807021 GTTGACTTAG
15807031 GCATACAGAGTTCAATCCTAGTCTAA
1 GCATACAGAGTTCAATCCTAGTCTAA
15807057 GCATACAGAGTTCAATCCTAGTCTAA
1 GCATACAGAGTTCAATCCTAGTCTAA
15807083 GCAT
1 GCAT
15807087 GATGTACGAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCAATCCTAGTCTAA
Found at i:15808691 original size:26 final size:26
Alignment explanation
Indices: 15808655--15808733 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
15808645 GTTGACTTAG
15808655 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15808681 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15808707 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15808733 G
1 G
15808734 ATCGGACCGG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15811367 original size:26 final size:26
Alignment explanation
Indices: 15811330--15811382 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15811320 GTTGACTTAG
*
15811330 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
15811356 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15811382 G
1 G
15811383 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15812261 original size:26 final size:26
Alignment explanation
Indices: 15812231--15812283 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15812221 GTTGACTTAG
*
15812231 GCATACGGAGTTCATTTCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
15812257 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
15812283 G
1 G
15812284 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:15812371 original size:901 final size:896
Alignment explanation
Indices: 15810477--15812995 Score: 3416
Period size: 901 Copynumber: 2.8 Consensus size: 896
15810467 GTTGACTTAG
* * *
15810477 GCATACGGAGTTCATTCCCATTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCTCATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCACATGCTGGG
* * *
15810542 CTCGGGCA-AGTGCTGGTGCCTCATTTTTCTTCATCGGGGCACCA---TC-A-C--CG-GTGA-A
66 CTCGAGCATA-TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGAGCATCGCG-GAGA
* * * * * ** * * *
15810597 CCTGACCCGCGGCACTCGAGTTTTGGCGATCGGGGGTGCCGGGGGGTGTGCGCACATGATGTGCG
129 ACTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGCG-AGGGGGGTGTGCGCACATGATGTGCG
* * *
15810662 ATGGGCGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTTGAGAACTCACAC
193 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
15810727 CCCTTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
258 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
15810792 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-A----------
323 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
*
15810846 -A-GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAATAT
388 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * *
15810909 TTTAAAAAATCCCGAACC-TCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTG
453 TTTAAAAAATCCCGAACCGT-AAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* *
15810973 CCGTGAAACTTCACGTGAAGCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
517 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
**
15811038 TGGCACGTAGAAATATGAAGATTTGCCTAAACCTGCCTACCACCCTATCGATCCACGGCTTGCGC
582 TGGCACGTAGAAATATGAAGATTTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * * * *
15811103 ATCTCGTCTCTCTCGTCGGCGTAATGCCCGCCCGCCCGTCCACTCGCTCATTTTGTCAGTTGGCT
647 ATCCCGTCTCTCTCGCCGGCGTAGTGCCCG-CCG-CCG-CCGCCCGCTCGTTTCGTCGGTTGGCT
* * * *
15811168 TAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGAACCGAAAGTTGTGGCAGTAGGATTG
709 TAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGAACCGAAAGTTATGGCAGCAAGATCG
* * * *
15811233 GCAGCATGCAGAGGGGGACCTGACCAATCCTCAGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAG
774 ACAGCATGCAGAGGGGGACCCGACCAATCCTCAGCTTGCGCATCCCGCCCCTATGGCCGGCTGAG
* *
15811298 CGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
839 CGCCCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
* * * * *
15811356 GCATACGAAGTTCATTCCTAGTCTAAGATC-GAACCAGACCAATGGTTGCGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGTGGCAGCACATGCTGG
* * *
15811420 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTTGCCGGGGCACCATCGTCGAAGCATCGTCGGAG
65 GCTCGAGCATATGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCG-AGCATCG-CGGAG
* * * *
15811485 ATACTGACCGGCGGTATTGGGGTTCCGATGATCGAGGGG-GTGGGGGTTGTGCGCACATGATGTG
128 A-ACTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGGCGAGGGGGGTGTGCGCACATGATGTG
* *
15811549 CGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCAC
191 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
15811614 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAAT
256 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
**
15811679 GGGGACACTTTTTTCAAATCATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
321 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
15811744 TGCATGCCAACAAAAACACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
386 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
*
15811809 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAA-GAGTCGTCTT
451 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* ** * **
15811873 GCCAAGAAACTGAACATGAAGGCTTAAGGGACCATTGTATGAATTTGTAAGCCATAAAAATGGCA
516 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
15811938 TTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTTCC-CTCCTATCGATCCACGGCTTGC
581 TTGGCACGTAGAAATATGAAGATTTGCCTAAACCCACCTACCAC-CCTATCGATCCACGGCTTGC
* * * ** *
15812002 ACAGCCCGTCTCTCTTGCCGGCACAGTGCCCGGCCGCCTGGCCGCCCGCTCGTTTCATCGGTTGG
645 GCATCCCGTCTCTCTCGCCGGCGTAGTGCCC-GCCGCC--GCCGCCCGCTCGTTTCGTCGGTTGG
* * * * * * **
15812067 CTTAGGCATACAGAGTTCATTCCTAGTGTAAGATCCGACTGGATCGAGGGTTATGGCAGCAAGAT
707 CTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGAACCGAAAGTTATGGCAGCAAGAT
**** * *
15812132 CGACAGCATGCAGAGGGGGACCCGTTTGATCCTCGAG-TTGCGCATCCTGCCCCTATGGTCGGCT
772 CGACAGCATGCAGAGGGGGACCCGACCAATCCTC-AGCTTGCGCATCCCGCCCCTATGGCCGGCT
* * *
15812196 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTTCCAATCTAA
836 GAGCGCCCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
* *
15812257 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTATGGCAACACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCACATGCTGGG
* *
15812322 CTCGAGCATATGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGTAGA
66 CTCGAGCATATGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GAGCATC-GCGGAGA
* *
15812387 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGGTGTGCGCATATGATGT
129 A-CTGACCGGCGGCATTGGGGTTCCGACGATC--GGGGG-CGAGGGGGGTGTGCGCACATGATGT
*
15812452 GCGATGGGTGCTGGTCCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
190 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
15812517 CACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
255 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
15812582 TGGGGACACATTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTATCTGAATTTTTTT
320 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
15812647 GTGCATGCCAAAAAAAATATAAGCATCACGTCTACCATGTTTGTGGCCAAAACTCCTTCCGAAAA
385 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * * * *
15812712 AATTTAAAAAAATCCCAAACCGTAAACAGTTTGGAAAATCGTGACAAATAGAAAACGAGTCATCT
450 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
15812777 TGCGATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
515 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** * * * *
15812842 ATTGGCACACAAAAATATGAAGATTTGCCAAAACCCACCTACCACCCTATCGATTCACTGCTTGC
580 ATTGGCACGTAGAAATATGAAGATTTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
15812907 GCATCCCGTCTCTCTGGCCGGCGTAGTG--C-CCG-C-CCGCCCACTCGTTTCGTCGGTTGGCTT
645 GCATCCCGTCTCTCTCGCCGGCGTAGTGCCCGCCGCCGCCGCCCGCTCGTTTCGTCGGTTGGCTT
15812967 AGGCATACGGAGTTCATT-CTCAGTCTAAG
710 AGGCATACGGAGTTCATTCCT-AGTCTAAG
15812996 CATACGGAGT
Statistics
Matches: 1433, Mismatches: 162, Indels: 72
0.86 0.10 0.04
Matches are distributed among these distances:
878 1 0.00
879 92 0.06
882 2 0.00
884 1 0.00
885 1 0.00
887 2 0.00
888 2 0.00
889 199 0.14
890 24 0.02
891 4 0.00
896 2 0.00
897 49 0.03
900 5 0.00
901 472 0.33
902 115 0.08
903 3 0.00
904 315 0.22
905 143 0.10
906 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (896 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCACATGCTGGG
CTCGAGCATATGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGAGCATCGCGGAGAAC
TGACCGGCGGCATTGGGGTTCCGACGATCGGGGGCGAGGGGGGTGTGCGCACATGATGTGCGATG
GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
AAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ACGTAGAAATATGAAGATTTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
CGTCTCTCTCGCCGGCGTAGTGCCCGCCGCCGCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
ACGGAGTTCATTCCTAGTCTAAGATCAGACCGAACCGAAAGTTATGGCAGCAAGATCGACAGCAT
GCAGAGGGGGACCCGACCAATCCTCAGCTTGCGCATCCCGCCCCTATGGCCGGCTGAGCGCCCAC
ACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
Found at i:15813005 original size:26 final size:26
Alignment explanation
Indices: 15812969--15813021 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15812959 GTTGGCTTAG
*
15812969 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15812995 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15813021 G
1 G
15813022 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15813909 original size:26 final size:26
Alignment explanation
Indices: 15813873--15813925 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15813863 GTTGACTTAG
15813873 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15813899 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15813925 G
1 G
15813926 ATCAGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15815521 original size:26 final size:26
Alignment explanation
Indices: 15815485--15815537 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15815475 GTTGGCTTAG
15815485 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15815511 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15815537 G
1 G
15815538 ATCGGATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15816226 original size:744 final size:744
Alignment explanation
Indices: 15814767--15816255 Score: 2425
Period size: 744 Copynumber: 2.0 Consensus size: 744
15814757 TTTGACTTAG
15814767 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
** **
15814832 CTCAGGCATGTGCTGGCGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
66 CTCAGGCATGTGCTGGCGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGA
** * * *
15814897 ACCTGACCGACGGCATTAGGGTTCCGGTGATCGGGTGGCCGGGGGGGTCTGCGCACATGATGTGT
131 ACCTGACCGACGGCATTAGGGTTCCGACGATCGGGGGGCCGGGAGGGTCTGCGCACATGATGTGC
* * * * *
15814962 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATTAGACCATGAGAACTCACT
196 AATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCATGAGAACTCACA
* *
15815027 CACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAATGTGTCTGAAATG
261 CACCCTTAAAGAGCATTTGAGAATTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
15815092 GGGACACTTTTTTCAAGTGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
*
15815157 GCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAGACTCCTTATAAAAAAA
391 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAGACTCCTTATAAAAAAA
*
15815222 TTTTAAGAAATTCCAAATCGTAAAAAGTTTCAAAAATCGTAAAAAAGAGAAAATAAGTCATCTTG
456 TTTTAAGAAATTCCAAATCGTAAAAAGTTTCAAAAATCGTAAAAAAGAGAAAACAAGTCATCTTG
15815287 CCATGCAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCAT
521 CCATGCAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
15815352 TGGCACACAAAAATATGAAGATGTCCCTAAACGCACCAACCACCCTACTGATCCACGGCTTGCGC
586 TGGCACACAAAAATATGAAGATGTCCCTAAACCCACCAACCACCCTACTGATCCACGGCTGGCGC
* *
15815417 ATCTCGTCTCTCTGCCCGGTGTAGTGCCCGCCCACCCTCCCGTCCGCTCGTTTCGTCAGTTGGCT
651 ATCTCGTCTCTCTGCCCGGTGTAGTGCCCGCCCACCCGCCCATCCGCTCGTTTCGTCAGTTGGCT
*
15815482 TAGGCATACGGAGTTCATTCCCAGTCTAA
716 TAGGCATACAGAGTTCATTCCCAGTCTAA
* * * * *
15815511 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATC-GAATCGAGGGTTGCGGCAGCACGTGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTGCGACAGCACATGCTGG
* * *
15815575 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAG
65 GCTCAGGCATGTGCTGGCGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAG
* * *
15815640 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGAGGGTGTGCGCACATGATG
130 AACCTGACCGACGGCATTAGGGTTCCGACGATC-GGGGGGCC-GGGAGGGTCTGCGCACATGATG
*
15815705 TGCAATGGGTGCTGGTTCTTGGCCCTTATATTAG-CCCCTATCCCTCATCAAACC-TCGAGAACT
193 TGCAATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCAT-GAGAACT
* * *
15815768 CACACCCCCTTATAGAGCATTTGAGAATTTACATGTTTGCTGCCAGTATG-CATTAAAGTGTCTG
257 CACACACCCTTAAAGAGCATTTGAGAATTTACAGGTTTGCTGCCAGTA-GCCATTAAAGTGTCTG
*
15815832 TAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
321 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
*
15815897 TTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAGACTCCTTATAA
386 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAGACTCCTTATAA
* *
15815962 AAAAATTTTAAGAAATTCCAAATCGTAAAAAGTTTCAAAAATCGTGAAAAAGAGAAAACGAGTCA
451 AAAAATTTTAAGAAATTCCAAATCGTAAAAAGTTTCAAAAATCGTAAAAAAGAGAAAACAAGTCA
*
15816027 TCTTGCCATGCAACTTCACGTGAAGGCTTAA-GGACAATTGTATGAATTTACAAGGCATAAAAAT
516 TCTTGCCATGCAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAAT
* * *
15816091 GGCATTGGCACATAGAAATATGAAGATGTCCCTAAACCCACCTACCACCCTA-TCGATCCACGGC
581 GGCATTGGCACACAAAAATATGAAGATGTCCCTAAACCCACCAACCACCCTACT-GATCCACGGC
*
15816155 TGGCGCATCTCGTCTCTCTGGCCGGTGTAGTGCCCGCCCACCCGCCCATCCGCTCGTTTCGTC-G
645 TGGCGCATCTCGTCTCTCTGCCCGGTGTAGTGCCCGCCCACCCGCCCATCCGCTCGTTTCGTCAG
15816219 ATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAA
710 -TTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAA
15816255 G
1 G
15816256 ATCAGACCGG
Statistics
Matches: 689, Mismatches: 49, Indels: 14
0.92 0.07 0.02
Matches are distributed among these distances:
743 3 0.00
744 329 0.48
745 306 0.44
746 51 0.07
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (744 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
CTCAGGCATGTGCTGGCGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGA
ACCTGACCGACGGCATTAGGGTTCCGACGATCGGGGGGCCGGGAGGGTCTGCGCACATGATGTGC
AATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCATGAGAACTCACA
CACCCTTAAAGAGCATTTGAGAATTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAGACTCCTTATAAAAAAA
TTTTAAGAAATTCCAAATCGTAAAAAGTTTCAAAAATCGTAAAAAAGAGAAAACAAGTCATCTTG
CCATGCAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACACAAAAATATGAAGATGTCCCTAAACCCACCAACCACCCTACTGATCCACGGCTGGCGC
ATCTCGTCTCTCTGCCCGGTGTAGTGCCCGCCCACCCGCCCATCCGCTCGTTTCGTCAGTTGGCT
TAGGCATACAGAGTTCATTCCCAGTCTAA
Found at i:15818144 original size:26 final size:26
Alignment explanation
Indices: 15818114--15818166 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15818104 GTTGACATAG
*
15818114 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
* * *
15818140 GCATATGGAGTTCATTCCTAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
15818166 G
1 G
15818167 ATCGGATCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:15819053 original size:26 final size:26
Alignment explanation
Indices: 15819017--15819069 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15819007 GTTGACTTAG
* *
15819017 GCATACGGAGTTGATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15819043 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15819069 G
1 G
15819070 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15820788 original size:26 final size:26
Alignment explanation
Indices: 15820752--15820813 Score: 115
Period size: 26 Copynumber: 2.4 Consensus size: 26
15820742 TTGACTTAGG
15820752 CATACGGAGTTCATTCCCAGTCTAAA
1 CATACGGAGTTCATTCCCAGTCTAAA
*
15820778 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAA
15820804 CATACGGAGT
1 CATACGGAGT
15820814 ATCGAACCAG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAA
Found at i:15822224 original size:895 final size:893
Alignment explanation
Indices: 15819823--15824310 Score: 5753
Period size: 895 Copynumber: 5.0 Consensus size: 893
15819813 TCCCCGGGAT
* ** * * * *
15819823 GCACACTCGTTTAATGGTTTGACTTAGGCATATGGAGTTTATTCCCAGTCTAAGCATACGAAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * * *
15819888 CATTCCCAGTCTAAGATC-GAAATAGATCGAGGGTT-CTGGCAGCACATGCTGGGCTCAGGCATG
66 CATTCCCAGTCTAAGATCAG-ACTGGACCGAGGGTTGC-GGCAGCACATGCTGGGCTCGGGCATG
* * * * *
15819951 TGCTAGTGCCGCATTTTTCTTCGTCGGGGCACCAACGCCGGAGCATCGTCGGAAAACCTGACCAG
129 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGG
* *
15820016 CGGCATTGGGGTTCCGACAATCGGGGGGCC-GGGGGGTGTGCGCACATGATATGCGATGGGTGCT
194 CGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
*
15820080 -GTACTTGGCCCTTATATTTGCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAG
259 GGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAG
** *
15820144 AGCATTAAAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
324 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* *
15820209 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCACGCAAAAA
389 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAA
** *
15820274 AAAATGGAAGGATCATGTCTACCAAGTTTGCGGCCAAAAA-TCCTTT-CGAAAAGAATTTTAAAA
454 AAAATACAAGGATCACGTCTACCAAGTTTG-GGCCAAAAACT-CTTTCCGAAAA-AATTTTAAAA
* * *
15820337 GATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTTCCATGAAA
516 AATCCCGAACCG-CAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
*
15820402 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTAGCATGC
580 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
*
15820467 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTC
645 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* *
15820532 TCTCTGGCCGACGTAGTGCCCGCCCGCATGCCCGTCCGCTTGTTTCGTCGGTTGGCTTAGGCATA
710 TCTCTGGCCG-CGTAGTGCCCG-CC-C--G--C--CCGCTCGTTTCATCGGTTGGCTTAGGCATA
*** * * * **
15820597 CGGAGTTCATTCCCAAAGTAAGATCAGATCA-GA-CTGAAGGTTACGGTAGCAGGATCGATTGCA
766 CGGAGTTCATTCCCAGTCTAAGATCAGATCAGGATC-GAGGGTTGCGGCAGCAGGATCGACAGCA
* ** * * *
15820660 CACAGAGGGGGACCCGTTCGATCCCTGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCC
830 CGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCC
* * *
15820724 GCACCCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAACATACGGAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* *
15820789 CATTCCCAGTCTAAGCATACGGAGTA-TCGAACCAGACCGAGGGTTTCGGTAGCACATGCTGGGC
66 CATTCCCAGTCTAAG-AT-C--AG-ACT-G-----GACCGAGGGTTGCGGCAGCACATGCTGGGC
* * * * *** * **
15820853 TCAGGCATGTGCTGGTGCCGTATTTTTCTAC-TCCGGGCACCATTATCGGAGAATCATCGGAGAA
120 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAA
* * * * *
15820917 CCTGACCGACGACTTTGGGGTTTCGATGATCGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCG
185 CCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
* * *
15820981 ATGGGTGCTGGTACTTGG--C---------CCCCTATCCCTCATCAAACATCGAGAACTCATACC
250 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTTGAGAACTCACACC
*
15821035 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATTGG
315 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
15821100 GACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
380 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* ** * * *
15821165 ATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTAGGATC-GAAAGTCCTTCCGAAAAAAT
445 ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAAACTCTTTCCGAAAAAAT
* *
15821229 TTTAAAAAATCCCGAACCCCAAAATGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGC
509 TTTAAAAAATCCCGAACCGCAAAA-GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
*
15821294 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATT
573 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
** *
15821359 GGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCA
638 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * ** * * *
15821424 TCTCATCTCTCTGGCCAGCGTAGTTCCCTTCCTCCCGCTCGTTTCGTCTGTTGGCTTAGGCATAC
703 TCCCGTCTCTCTGGCC-GCGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATAC
* ** * *
15821489 AGAGTTCATTCCCAGTCTAAGATTGGA-CAGGATTGAGTGTTGCGGCAGCAGGATCGACAGCACG
767 GGAGTTCATTCCCAGTCTAAGATCAGATCAGGATCGAGGGTTGCGGCAGCAGGATCGACAGCACG
* * * * *
15821553 TAGTGGGGGACCCGACCGATCCCCGGCTTGCACATCCTGCCCCTTTGGCCGACTGAGCGCCC
832 CAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCC
* * * *
15821615 GCACGCTCGTTTTGTGGGTTGACTTAGGCGTACAGAGTTCATTCCCAGTCTAAGCATATGGAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * * *
15821680 CATTCCCAGTCTAAGATCAGACTGGACCGAGCGTTGCAGTAGCACATGCTGGGCTTGGGCATGTG
66 CATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* * *
15821745 CTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACCGGTG
131 CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCG
* *
15821810 GTATTGGGGTTCCGACGATCGGTGGGGCCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTG
196 GCATTGGGGTTCCGACGATCGG-GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* * *
15821875 GTACTTGGCCCGTATATTGGCCCCATATCCCTCACCAAACCTTGAGAACTCACA-CTCCTTAAAG
260 GTACTTGGCCCTTATATTGGCCCC-TATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAG
* *
15821939 ACCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
324 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * * *
15822004 TTCAAATGGTCACAAAATCTTGTACAC-TCTGAGTTTTTGGCTGAATTTTTTTATGCACGCCAAC
389 TTCAAATGGTCACAAAATCTTGTACACTTC-GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
* * *
15822068 AAAAATTCAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCTTTCCAAAAAAATTTTAAAAAA
453 AAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAAACTCTTTCCGAAAAAATTTTAAAAAA
* * * *
15822133 TCTCGAACCGTCAAAAGTTAT-GAAAATCATGAAAAAATAGAAAATGAGTCGTCTTGCAATGAAA
518 TCCCGAACCG-CAAAAGTT-TCAAAAATCATG-AAAAATAGAAAACGAGTCGTCTTGCCATGAAA
*
15822197 CTTCATGTGAAGGCTTAAGGG-CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
580 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* *
15822261 AAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATTCCGTC
645 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
** * * *
15822326 TCTCTGGCCAATGTAGTGCCCGCCCGCCCGTTCATTTCATCGGTTGGCTTAGGCATACGAAGTTC
710 TCTCTGGCC-GCGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTC
* * * * * * * * *
15822391 ATTCCCAATCTAAGATCAGATC-GAACCAAGGGTTGTGGCAACAGGATTGACAGCACACGGAGGG
774 ATTCCCAGTCTAAGATCAGATCAGGATCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGG
* * * * * * * *
15822455 GGACTCGGCTGATCCTCGGCTTGCGCATCCTGCCTCTCTAGCC-AGTTGAGCGCCC
839 GGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGA-CTGAGCGCCC
* * *
15822510 GCACGCTTGTTTCGTGGGTTGACTTAGGCATA-GAGAGTTCATTCCCAGTCTAAGCTTACAGAGT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACG-GAGTTCATTCCCAGTCTAAGCATACGGAGT
* * * * * * *
15822574 TCATTCTCAATCTAAGATCGGACTGAACCGAAGGTTGTGACAGCACATGCTGGGCTCGGGCATGT
65 TCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT
* * * * *
15822639 GCTGGT-CCGTATTTTTCTTTGCCGGAGCACCATCGCCGGAGCATCGCC-GAGAACCTGATCGGC
130 GCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGC
* *
15822702 GGCATTGGGGTTGC-AGTGATCGGGGGGGCCGGGGGGTGTGTGCGCACATGATGTGCGATGGGTG
195 GGCATTGGGGTTCCGA-CGATC-GGGGGGCCGGGGGG-GTGTGCGCACATGATGTGCGATGGGTG
* *
15822766 CTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTTGGGAACTCACACCCCCTTA
257 CTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTA
* * *
15822831 AAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAATTGGGGACAC-
321 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* *
15822895 TTTTTCAATTGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
386 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * *
15822960 AGAAAAATACAAGGATGACGTCTACCAACTTTGGGCCCAAAACTCCTTT-CGAAAAAATTTTAAA
451 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAAACT-CTTTCCGAAAAAATTTTAAA
* * *
15823024 AAATCCCAAACCGCAAAAGGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCTATGAA
515 AAATCCCGAACCGCAAAA-GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* *
15823089 ACTTCACGTGAACGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
579 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * *
15823154 CAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCACGGCTTGTGTATCCCGT
644 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
15823219 CTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCCCGCCCTCTCGTTTCATCGGTTGGCTTAGGCAT
709 CTCTCTGGCC-GCGTAGTGCCCG----CCCGCCCG----CTCGTTTCATCGGTTGGCTTAGGCAT
* * * * *
15823284 ACGGAGTTCATTCCCAGTCTAAGATCAGA-CTGGATCGAGGGCTGCAGTAGCAGGATCGGCAGCA
765 ACGGAGTTCATTCCCAGTCTAAGATCAGATCAGGATCGAGGGTTGCGGCAGCAGGATCGACAGCA
* * * *
15823348 CGCAAAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCAGGCTAAGCGCCC
830 CGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCC
* * * *
15823412 ACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTC-GTCTAAGCATATGGACT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-CAGTCTAAGCATACGGAGT
* * * * * *
15823476 TCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGACAGCACATGCTGGGATCGAGCATGT
65 TCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT
* * * * * *
15823541 GGTGGTGTCGCATTATTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCAGAGAACCTGATCGGC
130 GCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGC
* * *
15823606 AGCATTGGGGTTCCGACGATCGGGGGGACCGGGAGGGGTGTGAGCACATGATGTGCAATGGGTGC
195 GGCATTGGGGTTCCGACGATCGGGGGG-CCGGG-GGGGTGTGCGCACATGATGTGCGATGGGTGC
* * * * * *
15823671 TGGTATTTGGCCCTTATATTGGCTGCATATCCCTCATCAAACCTCGAGAACTCACAACCCCTTGA
258 TGGTACTTGGCCCTTATATTGGC-CCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAA
* * * *
15823736 AGAGCATTTAAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAATGTCTGAAATGGAGACACTT
322 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
*
15823801 TTTTCAAATGGTCACAAAATCTTTTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
387 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * *
15823866 CAAAAATACAAGGATCACGTCTACCAATTTTGGGGCC-AAAACTCCTTCTGAAAAAATTTTAAAA
452 AAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAAACTCTTTCCGAAAAAATTTTAAAA
** * * * * * *
15823930 AATTTCAAACTGCAAAAAGCTTCAAAAAACGTGAAAAATAGAAAACGAGTCCTCTTGCCATGAAA
516 AATCCCGAACCGC-AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * **
15823995 CTTCACGTGAACGCTTAAGAGACCATTGTACAAATTTACAAGCCATAAAAATGGCATTGGCATGC
580 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* * *
15824060 ACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCGACGGCTTGCACATCCCGTC
645 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* *
15824125 TCTCTGGCCGACGTAATGCCCGCCCGCCCGCTTGTTTCATCGGTTGGCTTAGGCATACGGAGTTC
710 TCTCTGGCCG-CGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTC
* * * * * * ** * *
15824190 ATTCCCAGTCTAAGATCGGACCA-AATCAAGGGTTACGACAATAGGATCGGCAGCATGCAGAGGG
774 ATTCCCAGTCTAAGATCAGATCAGGATCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGG
* * *
15824254 GGACCCGGCTGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGACTGAGCGCCC
839 GGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCC
15824309 GC
1 GC
15824311 CCGCCCGCCC
Statistics
Matches: 3132, Mismatches: 377, Indels: 160
0.85 0.10 0.04
Matches are distributed among these distances:
881 53 0.02
882 53 0.02
883 6 0.00
884 42 0.01
886 3 0.00
887 3 0.00
889 1 0.00
890 4 0.00
891 200 0.06
892 1 0.00
893 96 0.03
894 372 0.12
895 638 0.20
896 83 0.03
897 134 0.04
898 14 0.00
899 213 0.07
900 201 0.06
901 81 0.03
902 239 0.08
903 45 0.01
904 177 0.06
905 308 0.10
906 11 0.00
909 1 0.00
910 90 0.03
911 62 0.02
912 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (893 bp):
GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
CATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCG
GCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
TACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAG
CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAA
AATACAAGGATCACGTCTACCAAGTTTGGGCCAAAAACTCTTTCCGAAAAAATTTTAAAAAATCC
CGAACCGCAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
GCCGCGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
GTCTAAGATCAGATCAGGATCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCG
ACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCC
Found at i:15823469 original size:26 final size:26
Alignment explanation
Indices: 15823439--15823498 Score: 72
Period size: 26 Copynumber: 2.4 Consensus size: 26
15823429 GTTGACTTAG
*
15823439 GCATACGGAGTTCATTCCTC-GTCTAA
1 GCATACGGACTTCATTCC-CAGTCTAA
*
15823465 GCATATGGACTTCATTCCCAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
15823491 G-AT-CGGAC
1 GCATACGGAC
15823499 CGGACTGAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
24 4 0.13
25 3 0.10
26 23 0.77
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGACTTCATTCCCAGTCTAA
Found at i:15824415 original size:171 final size:171
Alignment explanation
Indices: 15824142--15824466 Score: 443
Period size: 171 Copynumber: 1.9 Consensus size: 171
15824132 CCGACGTAAT
* *
15824142 GCCCGCCCGCCCGCTTGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
1 GCCCGCCCGCACGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * *
15824207 GGACCAAATCAAGGGTTACGACAATAGGATCGGCAGCATGCAGAGGGGGACCCGGCTGATCCCCG
66 GGACCAAACCAACGGTTACGACAACAGGATCGGCAGCACGCAAAGGGGGACCCGGCTGATCCCCG
15824272 GCTTACGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCCC
131 GCTTACGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCCC
* * *
15824313 GCCCGCCCGCATGCTCGTTTCATTGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATC
1 GCCCGCCCGCACGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
** ** ** * * * * *
15824378 GGACCAGGCCAACGGTTGTGGTAGCAGGATTGGCAGCACGTAAAGGGGGACCCGGTTGATCCCTG
66 GGACCAAACCAACGGTTACGACAACAGGATCGGCAGCACGCAAAGGGGGACCCGGCTGATCCCCG
* *
15824443 GCTTGCGCATCCCGCCCTTCTGGC
131 GCTTACGCATCCCGCCCCTCTGGC
15824467 AAGCTGAACG
Statistics
Matches: 131, Mismatches: 23, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
171 131 1.00
ACGTcount: A:0.18, C:0.32, G:0.29, T:0.21
Consensus pattern (171 bp):
GCCCGCCCGCACGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
GGACCAAACCAACGGTTACGACAACAGGATCGGCAGCACGCAAAGGGGGACCCGGCTGATCCCCG
GCTTACGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCCC
Found at i:15824538 original size:26 final size:26
Alignment explanation
Indices: 15824509--15824559 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
15824499 TGACTTAGGA
*
15824509 ATACGGAGTTCATTCCTAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
15824535 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
15824560 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:15827385 original size:27 final size:27
Alignment explanation
Indices: 15827347--15827399 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
15827337 GTTGACTTAG
15827347 GCATACAGAGTTCATTCCCAGTCTAAA
1 GCATACAGAGTTCATTCCCAGTCTAAA
15827374 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15827400 GATCGGACTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (27 bp):
GCATACAGAGTTCATTCCCAGTCTAAA
Found at i:15828282 original size:26 final size:26
Alignment explanation
Indices: 15828243--15828296 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
15828233 TGGGTTGACT
15828243 TAGGCATACAGAGTTCATTCCCAGTC
1 TAGGCATACAGAGTTCATTCCCAGTC
*
15828269 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACAGAGTTCATTCCCAGTC
15828295 TA
1 TA
15828297 AGATTGAACT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
TAGGCATACAGAGTTCATTCCCAGTC
Found at i:15828443 original size:898 final size:889
Alignment explanation
Indices: 15826475--15830548 Score: 4716
Period size: 898 Copynumber: 4.6 Consensus size: 889
15826465 GTTGACTTAG
* * * * ** *
15826475 GCATACGGAGTTCATTCCCAGTCTAAGA-TCAGACCGAATTGAGGGTTACGGA-AGCACATGCTG
1 GCATACAGAGTTCATTCCCAGTCTAAGATTGA-ACTGGACCGAGGGTTGC-GACAGCACATGCTG
* *
15826538 GGCTCGAGCATGTGCTGGTG-C-CATTTTTCTTCACCGGGGCTCCATCGTCGGAGCATCG-CCAA
64 GGCTCG-GCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGAA
* * * * * *
15826600 GAACCTGATCGGTGGCATTGGGGTT-TCGACGATC-----G--AGGGGGTGTCCACACAAGATGT
128 GAACCTGACCGGCGGCATTGGGGTTCT-GACGATCAGGGGGCCGGGGGGTGTGCGCACATGATGT
*
15826657 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAACCTTGAGAACTC
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC-AAACCTCGAGAACTC
*
15826722 ACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
256 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
15826787 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTCAATTTTTT
321 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * ** * *
15826852 TGTGCGTACCAAC--AAATAC-AGGA-CACATCTAGCCAACCTT-GGCCAAAAACTGCTTCCGAG
386 T-TGCATGCCAACAAAAATACAAGGATCACGTCTA-CCAAGTTTGGGCC-AAAACTCCTTCCGAA
* * * *
15826912 AAAAATTTTTAAAAATCTGTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAGAAAA-CAGT
448 AAAAATTTTAAAAAATC-CTGAACCTCAAAAAGTTTCAAAAATCATGAAAAAT-AGAAAATGAGT
* * *
15826976 CCGTCTTG-CATTAAA-TCTCATCGTGAA-GCTTAAGGG-CCATTGTATGGAAATTT-TAAGCCA
511 -CATCTTGCCATGAAACT-TCA-CGTGAAGGCTTAAGGGACCATTGTAT-G-AATTTACAAGCCA
* *** *
15827036 TAGGAAATAATGGCATTGCAACTTAGAAATATGAAGATGTGCCTAAACCTCACCTACCACCATAT
571 T---AAA-AATGGCATTGGAAAGCAGAAATATGAAGATGTGCCTAAACC-CACCTACCACCCTAT
* * *
15827101 C-ATCTATCGGCTTGCGCATCGC-ATCTCTCTGGCCGGCGTAATGCCGTCCGCCACGCCCCGCAT
631 CGATCCA-CGGCTTGCGCATC-CTATCTCTCTGGCCGGCGTAGTGCC--CCGCC-CG--CCTCA-
* * *
15827164 GTTTAGTCGGTT-GCTTTAGGCATACGGAGTTCATT-CCAGGCTAAGATCAGACCAGACCAGGGG
688 -TTTCGTCGGTTGGC-TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACC-GAGG
* * * *
15827227 GTTGCCTGCAGGCAGGATCGGCAGCATGCAGAGGAGGGGA-TCCGATCAATCCCCGGCTTGTGCA
750 GTT-AC-GCA-GCAGGATCAGCAGCACGCAGA-G-GGGGACT-CGGTCAATCCCCGGCTTGTGCA
* * * * * * *
15827291 TCCCACCCCTCTAGCCGACTGAGCGCCCGCACGCTTGTTTTTGTGCGTTGACTTAGGCATACAGA
809 TCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCG-TTTCGTGGGTTGACTTAGGCATACAGA
15827356 GTTCATTCCCAGTCTAAA
873 GTTCATTCCCAGTCT-AA
* * * * *
15827374 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGTGGCAGCACATGGTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATTGAACTGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * * *
15827439 ATCGAGCATGTGCTGGTGCTGCGTTTTTCTTCACCGGGGCACCATCGTTGGAGCATCGTTGGAGA
66 CTCG-GCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGAAGA
* *
15827504 ACCTGACCGGCGACATTGGGGTTCCGACGATCAGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
130 ACCTGACCGGCGGCATTGGGGTTCTGACGATCAGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
*
15827569 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCATCATCAAACCTCGAGAACTCACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * * *
15827634 CCCCTTGAAGAGCATTTGAGATTTTA-TGAGTTTGCTGCCAATAGCCAATAAAGTGTCTGAAATG
260 CCCCTTAAAGAGCATTTGAGATTTTACAG-GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
15827698 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTAGCTGAATTTTTTTTA
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTT-
* * * *
15827763 GCATGCCAACAGAAATACAAGGATCACGTCTACCAATTTTAGGGCCAAAACGCCTTCTGAAAAAA
388 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCCGAAAAAA
*
15827828 ATTTTAAAAAATCCTGAACCTCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTT
452 ATTTTAAAAAATCCTGAACCTCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCATCTT
* * * *
15827893 GCCATGAAACTTGATGTGAAGGCTTAAGGGACCATTGTATGAATTTACGAGCCATAAAAATGGCT
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
15827958 TTGGAAAGTAGAAATATGAATGATTTACCTAAAACCCACCTACCACCCTATCCGTTCCAGCGGCT
582 TTGGAAAGCAGAAATATGAA-GATGTGCCT-AAACCCACCTACCACCCTAT-CGATCCA-CGGCT
* * * * *
15828023 TACGCATCCTGTCTCTCTGGCCGTCACGTAGTACCCGGCCCG-CTCATTTCGTCGGTTGGCTTAG
643 TGCGCATCCTATCTCTCTGGCCG--GCGTAGTGCCCCGCCCGCCTCATTTCGTCGGTTGGCTTAG
* *
15828087 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACAGTAGCAGGATC-GAC
706 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTAC-GCAGCAGGATCAG-C
* * ** *
15828151 TGCACGCAGAGGGGGA-TCCGGTCGATCCTTGGCTTGTGGATCCCGCCCCTCTGGCTGGCTGAGC
769 AGCACGCAGAGGGGGACT-CGGTCAATCCCCGGCTTGTGCATCCCGCCCCTCTGGCTGGCTGAGC
* * *
15828215 TCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAG
833 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* *
15828272 GCATACGGAGTTCATTCCCAGTCTAAGATTGAACTGGACCAAGGGTTGCGACAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATTGAACTGGACCGAGGGTTGCGACAGCACATGCTGGG
* * *
15828337 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTTGGAGCATCGTCGGAGA
66 CTC-GGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGAAGA
* *
15828402 ACCTGACCGACGGCATAGGGGTTCTGACGATCAGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
130 ACCTGACCGGCGGCATTGGGGTTCTGACGATCAGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
*
15828467 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCGCAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
15828532 CCCCTTAAAGAGCATTTGATATTTTACAGGTTTGCTGCCATTAGCCATTAAAGTGTCTGAAATGG
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
15828597 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGC
325 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTGC
* *
15828662 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAACTCTTTCC-AAAAAAAG
390 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG-CCAAAACTCCTTCCGAAAAAAAT
** * *
15828726 TTTAAAAAATCCCAAACCAT-AAAAAGTTTCCAAAATCGTGAAAAATAGAAAATGAGTCATCTTG
454 TTTAAAAAATCCTGAACC-TCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCATCTTG
*
15828790 CCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGGCAT
518 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * *
15828855 TGGCATGCAGGAATATGAAGATGTGCCTAAACCCACATACCACCCTATCGATCCACGGCTTGCAC
583 TGGAAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * *
15828920 AT-CTCATCTCTCTGGCCGGCGTAGTGCTTGCCCGCCCACCTGCTCGTTTTGTCTGTTGGCTTAT
648 ATCCT-ATCTCTCTGGCCGGCGTAGTGC---CCCGCCC-GC--CTCATTTCGTCGGTTGGCTTAG
* ** ** * *
15828984 GCATACGGAGTTCATCCCCAGTCT-A-ATTTGATCTGGACCAAGGGTTGCGACAGCAGGATCAGC
706 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CCAGACCGAGGGTTACG-CAGCAGGATCAGC
* ** * * *
15829047 AGCATGCAGAGGGGGACTCGGTTGATCCCTGGCTTGCGCATTCCGCCCCTCTGGCTGGCTGAGCG
769 AGCACGCAGAGGGGGACTCGGTCAATCCCCGGCTTGTGCATCCCGCCCCTCTGGCTGGCTGAGCG
* * * * *
15829112 CTCGGACGCTCATTTCGTGGGTGGACTTAGGCATACGGAGTTCATTCCCAG--T--
834 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
*
15829164 -C-T--A-AG---------A-TC--AGA-T---C-GGACCAAGGGTTGC-AGCAGCACATGCTGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATTGAACTGGACCGAGGGTTGCGA-CAGCACATGCTGG
* ** * ** * ** *
15829206 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCAGCATCACCAGAGCATCACCAAAG
65 GCTC-GGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGAAG
* * * * *
15829271 AACCTGACCGGTGGCATT-GGGTTTTCGGCGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGT
129 AACCTGACCGGCGGCATTGGGGTTCT-GACGATC-AGGGGGCCGGGGGGTGTGCGCACATGATGT
* * *
15829335 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAGCTCGAGAAATCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
15829400 CACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
15829465 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTGGAGTTTTTAGCTGAATTTGTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT-TTT
* * *
15829530 TTGCATGCCAACAAAAAGACAAGGATCACATTTA-CAACGTTTGGGGCCAAAACTCCTTCCG-AA
386 TTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA-GTTT-GGGCCAAAACTCCTTCCGAAA
* * * *
15829593 AAAATTTTAAAAAATCC-CAAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCA
449 AAAATTTTAAAAAATCCTGAACCT-CAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCA
* *
15829657 TCTTGCCATTAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAAT
513 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
15829722 GGCATTGGTAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
578 GGCATTGGAAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * **
15829787 TGCGCATCCCATCTCTCTGGCCGGTGTAGTGCCTGCCCACCCGTCTGCTTGTTTCGTCGGTTGGC
643 TGCGCATCCTATCTCTCTGGCCGGCGTAGTG-C--CCCGCCCG-C--CTCATTTCGTCGGTTGGC
** * * * ** *
15829852 TTAGGCATATAGAGTTCAGTCCCAATCTAAGATCAAACTGGACCGAGGGTTATGGCAGCAGGATC
702 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTA-CGCAGCAGGATC
* * * * * *
15829917 AGCAGCACACAGAGTGGGACTCGGTTAATCCCCGGCTTGTGCTTCCCGCCCCTTTGG-TCGCCTG
766 AGCAGCACGCAGAGGGGGACTCGGTCAATCCCCGGCTTGTGCATCCCGCCCCTCTGGCT-GGCTG
* * * * *
15829981 AGTGCTCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACAAAATTCATTCCCAGTCTAA
830 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * ** * **
15830041 GCTTACAGAGTTCATTCCCAGTCTAAGATTGGA-TCGGATTGAGGGTTACGGTAGCACATGCTGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATTGAACT-GGACCGAGGGTTGCGACAGCACATGCTGG
* * *
15830105 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCAGGGCACCA---TC---GC--CGT---AG
65 GCTC-GGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGAAG
* * * *
15830159 AACCTGACAGACGGCATTGGGGTTCTGACGATCGGGGGGCTCGGGGGGTGTGCGCACATGATGTT
129 AACCTGACCGGCGGCATTGGGGTTCTGACGATCAGGGGGC-CGGGGGGTGTGCGCACATGATGTG
* *
15830224 CGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTTAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
15830289 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTAAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
15830354 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGTTGAAGTTTTTTT
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTT
*
15830419 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG-AAA
387 -TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCCGAAAA
* * **
15830483 AAATTTTAAAAAAT-CTCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAAAAAACAAGTCAT
450 AAATTTTAAAAAATCCT-GAACCTCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCAT
15830547 CT
514 CT
15830549 AACATCGGAC
Statistics
Matches: 2767, Mismatches: 304, Indels: 218
0.84 0.09 0.07
Matches are distributed among these distances:
869 7 0.00
870 102 0.04
871 217 0.08
872 303 0.11
873 129 0.05
874 5 0.00
875 4 0.00
877 2 0.00
878 2 0.00
879 1 0.00
881 1 0.00
882 2 0.00
887 8 0.00
888 225 0.08
889 118 0.04
890 14 0.01
891 5 0.00
892 24 0.01
893 14 0.01
894 23 0.01
895 13 0.00
896 265 0.10
897 93 0.03
898 361 0.13
899 171 0.06
900 56 0.02
901 36 0.01
902 47 0.02
903 3 0.00
904 36 0.01
905 23 0.01
906 3 0.00
907 26 0.01
908 168 0.06
909 75 0.03
910 60 0.02
911 70 0.03
912 51 0.02
913 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (889 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATTGAACTGGACCGAGGGTTGCGACAGCACATGCTGGG
CTCGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGAAGAA
CCTGACCGGCGGCATTGGGGTTCTGACGATCAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTGCA
TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAACTCCTTCCGAAAAAAATTT
TAAAAAATCCTGAACCTCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCATCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
AAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CTATCTCTCTGGCCGGCGTAGTGCCCCGCCCGCCTCATTTCGTCGGTTGGCTTAGGCATACGGAG
TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGCAGCAGGATCAGCAGCACGCAGAGG
GGGACTCGGTCAATCCCCGGCTTGTGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCG
TTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
Found at i:15830722 original size:26 final size:26
Alignment explanation
Indices: 15830684--15830736 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15830674 GTTGACTTAG
15830684 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
15830710 GCATATGGTGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15830736 G
1 G
15830737 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15832529 original size:26 final size:26
Alignment explanation
Indices: 15832492--15832544 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15832482 GTTGACTTAG
*
15832492 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
* *
15832518 GCATACGAAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
15832544 G
1 G
15832545 ATCAGACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:15833862 original size:26 final size:26
Alignment explanation
Indices: 15833820--15833869 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
15833810 AACTCCTTTT
*
15833820 GAAAAAATTTTACAAAATCCTGAACA
1 GAAAAAATTTCACAAAATCCTGAACA
*
15833846 GAAAAAAGTTTCA-AAAATCGTGAA
1 GAAAAAA-TTTCACAAAATCCTGAA
15833870 AAATAGAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 17 0.81
27 4 0.19
ACGTcount: A:0.54, C:0.12, G:0.12, T:0.22
Consensus pattern (26 bp):
GAAAAAATTTCACAAAATCCTGAACA
Found at i:15836039 original size:26 final size:26
Alignment explanation
Indices: 15836003--15836053 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
15835993 TTGACTTAGG
*
15836003 CATACGGAGTTCATTCCTAGTCTAAT
1 CATACGGAGTTCATTCCCAGTCTAAT
15836029 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
15836054 GATCGGACCG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAT
Found at i:15836933 original size:26 final size:26
Alignment explanation
Indices: 15836903--15836955 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15836893 GTTGACTTAG
**
15836903 GCATACGGTGTTCATTCCCACTCTAA
1 GCATACGAAGTTCATTCCCACTCTAA
*
15836929 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCACTCTAA
15836955 G
1 G
15836956 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCACTCTAA
Found at i:15839258 original size:862 final size:859
Alignment explanation
Indices: 15831613--15845496 Score: 14183
Period size: 862 Copynumber: 15.8 Consensus size: 859
15831603 CCCAATCTAA
* ** * *
15831613 GCATACGGAGTTCATTCCCAGTCTTAGATCAGATTGGACCGAGGGTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTATGGCAGCACATGCTGGG
* * * **
15831678 CTCGGGCATTTTCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGAAGCATCGTAGCAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATC-TCGGAGCATCGCCG-AGA
** ** * **
15831743 ATTTGACCGATGGCATTGGGGTTCTGGTGATCGGAGGGGCCGGGGGGGTGTGCGCACATGATGTG
129 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGG-GGGGCC-GGGGGGTGTGCGCACATGATGTG
15831808 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCATTATCCCTCATCAAACCTCGAGAACTCAC
192 CGATGGGTGCTGGTACTTGGCCC-T-TA------C--TATCCCTCATCAAACCTCGAGAACTCAC
* *
15831873 ACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGGTGCCAGTAGCCATTAAAGTGTCTGAAAT
247 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
15831938 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAATTTTTAGCTGAATTTTTTTT
312 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTT
* * * *
15832003 GTGCACGCCAACAAAAATACAAGGATCACATCTATCAAGTTTGGGGCCAAAACTCCATCCAAAAA
376 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAA
* *
15832068 AATTTTAAAAAATCCCGAACCGCCAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
440 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
15832133 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
505 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
15832198 ATTGGC-TCACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCACGGCTTG
570 ATTGGCAT-GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * **
15832262 CGCATCCCGTCTCTCTGACCGACGTAGTGCCTGCCCGCCCGCCCGCCCGCTCCTTTTATCGGTTG
634 CGCATCCCGTCTCTCTGGCCGACGTA--G--TGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * * * * * * * * *
15832327 GCTTAGGCATACAGTGTTCATTCCCAGTCTAAGATTGGACCCGTCTGTGGGTTACGGTAGTAGGA
695 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGA
* * * * ** * ** * * *
15832392 TCGGCAGCATGCAAAAGGGGACCCGATCGATCCCCAGCTTGCGCATCCCGCCGTTCTTGCAGACT
760 TCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
*
15832457 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
825 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
*
15832492 GCATACGGAGTTCATTCCCAATCTAAGCATACGAAGTTCATTCTCAGTCTAAGATCAGACTAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---A----C---C---G----GAC----C
** * *
15832557 GGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTAGTGCCGCATTTTTCTTCGTCGGGG
41 -GAGGGTTATGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGG
* * *** *
15832622 CACCA--TC---G--TCG--GAGAACTTGATCGGCAAAATTGGGGTTCTGACGATCCGGGGGGCC
105 CACCATCTCGGAGCATCGCCGAGAACCTGACCGGCGGCATTGGGGTTCCGACGAT-CGGGGGGCC
* * *
15832678 GGGGGG-GCTGCGTGCACATAATGTGTGATGAGTGCTGGTACTTGGCCCTCATATTGGCCCCCTA
169 GGGGGGTG-TGC--GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT--TA--------CTA
* *
15832742 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCGG
221 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * *
15832807 TCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTCTTTCAAATCGTCACAAAATCTTGTACAC
286 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* *
15832872 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCACCAAAAATACAAGGATCACATCTACCAAGT
351 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
**
15832937 TTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACTTCAAAAAGTTTCAAAAATC
416 TTGGGGCCAAAACTCCTTCC-AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATC
*
15833002 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTTTA
480 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * *
15833067 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCATAAATATGAAGATGTTCCTAAACCCACCT
545 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * * * * * **
15833132 ACCACACTATCGATACACGGCTTACGCATCCCTTCTCTCTGGCCAATGTAGTGCCTACCCGCCCG
610 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG
* * * * * * *
15833197 TCCGCTCGTTCCGTCCGTGGGCTTAGGCATACGGAGTTCATTCCTAATCTAAGATCAGACCGGAC
675 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* * * * * * *
15833262 CGAGGGTTGTGGCAGCAAGATC-AGCAGCACACAGAGGTGGACCTGGTCGATCCTCGGCTTGCGC
740 CGAGGGTTGCGGCAGCAGGATCGA-CAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGC
* * *
15833326 ATCCCGCCCCTCTGG-GGGCCTGAGTGCCCGCACGGTCGTTTCATGGGTTGACTTAG
804 ATCCCGCCCCTCTGGCCGG-CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
* * * *
15833382 GCATACGGAGTTCATTCTCAGTCTAAGATCAGACCGGACCGAGGGTTATAGTAGAACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTATGGCAGCACATGCTGGG
*
15833447 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA--TC--A-C--CG--GAGAAC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCTCGGAGCATCGCCGAGAAC
* * * * * * * * * * *
15833503 TTTACCGACGACATTGGGGTTCCAATGATCGGGGGGCCGGGGGGGCTGTACGCACGTAAAGTGTG
131 CTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCC-GGGGGG-TGTGCGCACATGATGTGCG
* * *
15833568 ATGGGTTCTGGTACTTGGCCCTCATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCGCAC
194 ATGGGTGCTGGTACTTGGCCCT--TA--------CTATCCCTCATCAAACCTCGAGAACTCACAC
* *
15833633 CCACTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
249 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
** *
15833698 GGACACTTTTTTCAAATCATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATG
314 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * ** **
15833763 CAAGCCAAAAAAAATACAAGGATCACACCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAAAAAT
379 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCAAAAAAT
* * * * *
15833828 TTTACAAAATCCTGAACAGAAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGC
443 TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
15833893 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
508 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
15833958 GGCATGCA-AAATACGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCA
573 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * *
15834022 TCCTGTCTCTCTGGCCGGCGTAGT----GCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGC
638 TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * *
15834083 ATACGGAGTTCATTCCCAGTCTAAGACCGGACCGAACCGAGGGTTGCAGCAACAGGATCGACAGC
703 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGC
* * *
15834148 ACGCAGAGGGGGACCCGGCCGATCCTCAGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCGCCC
768 ACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* **
15834213 GCACGCTCATTTTGTGGGTTGACTTAG
833 GCACGCTCGTTTCATGGGTTGACTTAG
* * ** *
15834240 GCATACGGAGTTCATTCCCAGTCTAAGAT-AGGACCAGACCAAGGGTTGCGGTAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCA-GACCGGACCGAGGGTTATGGCAGCACATGCTGG
* * * * *
15834304 GCTCAGGCATGTGCTGGTGCCGTATTTATCTTCGTCGGGACACCA--TC--A-C--CG--GAGAA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCTCGGAGCATCGCCGAGAA
* * * *
15834360 CCTGACTGGCGGCATTAGGGTTCTGACTATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
130 CCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
*
15834425 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCGAGAACTCAAAC
194 ATGGGTGCTGGTACTTGGCCC-T-TA--------CTATCCCTCATCAAACCTCGAGAACTCACAC
* ** *
15834490 TCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTAAGTAGCCATTAAAATGTCTGAAATGG
249 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
15834555 GGTCACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTCAAGTTTTTAGCT-AAGTTTTTTTGT
314 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGT
* * ** * *
15834619 GCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGTGTGAAAACTACTTTCGAAAAAA
378 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCCAAAAAA
* ** * *
15834684 TTTTAAAAAATCCAGAACCATAAAAAGTTTCAAAAATCGTGAAAAATGGAAAACGAGTCGTCTTA
442 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* * *
15834749 CCATGAAACTTCACGTGAGGGCTTAAGGGACCATTGTATGAATTTAGAAGCCAAAAAAATGGCAT
507 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * *
15834814 TGCCATGCAAAAATATGAAGATGTGCCTAAACCCACCTCCCACCCTATCTATCCATGGCTTGCGC
572 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * *
15834879 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACCTGCTTGTTTCATCGGTTGGCTTAGG
637 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * **
15834944 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGGGGGTTGCAGCAGCAGGATCGGTAG
702 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAG
* * * * ** *
15835009 CACACAGAGTGGGACCCGGTCGAACCTTGGCTTGCGCATCCC-ACCCTGCTGGCCGGCTGAGCGC
767 CACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCT-CTGGCCGGCTGAGCGC
* * *
15835073 CCGTACACTCGTTTCGTGGGTTGACTTAGGCATACGAATTTCATTGCCAG
831 CCGCACGCTCGTTTCAT-GG--G---T-----T--G-A---C-TT---AG
* * * * *
15835123 TCCAAGCATACGGAGTTCATTCCCATTCTAAGATCGGACCAGACCAAGGGTCATGGCAGCACATG
1 -----GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTATGGCAGCACATG
* * *
15835188 CTGGGCTCGGGCATGTGCTGGTGCCTCATTTTTCTTCGCCAGGGCACCATCGTCGGAGCATCATC
61 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATC-TCGGAGCATC-GC
* * *
15835253 GGAGAACCTGACCGGCGGCATTGGGGTTTCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGAT
124 CGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGAT
* * * *
15835318 GTACGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTAACCCTCATCAAACCTCAAGAACT
189 GTGCGATGGGTGCTGGTACTTGGCCC-T-TA--------CTATCCCTCATCAAACCTCGAGAACT
* *
15835383 CGCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGA
244 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * * *
15835448 AATGGGGAAACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTATAGCTGAATTGTT
309 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* ** *
15835513 TTGTGCATGCCAA-AAAAATACAAGGATCATGTCTACCAAGGTTT-TAGCCAAAACTCCTTTCGA
374 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA-GTTTGGGGCCAAAACTCC-TTCCA
* * * * *
15835576 AAAAATTTTACAAAATCCCGAACCGTAAAAAGTATCAAAAATCGTGAAAAAGAGAAAACGAGTCA
437 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* * *
15835641 TCTTGCAATGAAATTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAATCCATAAAAAT
502 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * *
15835706 GGCATTGGCACGCAG-ATTATGAAGATGTGCCTAAACCCACCTACCACCATATCGTTCCACGGCT
567 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * **
15835770 TCCGCATCCCGTCTCTCTGGCCGACGTATAGCCCGCCCGCCCGCCCGCCCGCTCATTTCATCAAT
632 TGCGCATCCCGTCTCTCTGGCCGACG--TAG--TGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGT
* * * * * * *
15835835 TGCCTTAGGCATACGGAGTTCATTCCCAGTCTAATATCGAACCGAACCGAGGATTGTGGCAGGAG
693 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAG
* * * *
15835900 GATCGGCAGCATGCAGAGGGGGACCCGGCCGATCCCTGGCTTGCACATCCCGCCCCTCTGGCCGG
758 GATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* *
15835965 TTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
823 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGAC-T-----T----AG
* *
15836012 TTCATTCCTAGTCTAATCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGTGTTAT
1 ----------G------CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTAT
* * * ** *
15836077 GACAGCACATCCTGGGCTCGGGCATATGCTGGTGCCGCATTTTTCTGAGCCGGGGCACCATCACC
50 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATC-TC
* * * * *
15836142 GGAGCATCACCGGGGAACCTGACCGGTGGAATTGGGGTTCCGACGGTCGGGGAGGCCGGGGGGGT
114 GGAGCATCGCC-GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGG-GGCC-GGGGGG-
15836207 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCACTATCCCTCATC
175 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC-----TT-----ACTATCCCTCATC
* *
15836272 AAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTTAGATTTTACAGGTTTGCTGCCAGTAGCC
230 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* *
15836337 ATTAAAGTGTTTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
295 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * ** *
15836402 TTAGCTGAATTGTTTTGTGAATGATAACAAAAATACAAGGATCACGTCTACCAGGTTTGGGGCCA
360 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * * *
15836467 AAATTCTTTCCGAAAAAATTTTAAAAAATCCCGGACGGCAAAAAGTTTCAAAAATCGAGAAAAAT
425 AAACTCCTTCC-AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAAT
* * *
15836532 AGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAGTGTATGAATTTAT
489 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
15836597 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
554 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * *
15836662 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATGGTGCCCGCCCGCCCGCCCGCTCGT
619 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGT
* * *
15836727 TTCGTCGGTTGGCTGAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGACGGTTG
684 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG
* * * * * * * * * *
15836792 CGGCAGCGGGGTTGGCAGCATGTAGAGGGGGACCCGG-TGAATCCCTGGCTTACGCATCCCACCC
749 CGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGCCG-ATCCCCGGCTTGCGCATCCCGCCC
* *
15836856 CTCTGGCTGGCTGAGCGCCGGCACGCTCGTTTCATGGGTTGACTTAGGCATACGG
813 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGAC-T-----TA--G
* *
15836911 TGTTCATTCCCACTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTT
1 -G--CA-T---A--C---G-----G-AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTT
* * * * * *
15836976 ACGGAAGCACATGCTGGGGTTGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCA--T
48 ATGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCT
* * * ** *
15837039 C---G--TTG--GAGAACCTGATCGACGGCATTGGGGTTCCGATAATCGGGTGGG-CGAGGGGCA
113 CGGAGCATCGCCGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGG-GGGCCG-GGGG-G
* * *
15837096 TGTACGCACATGATGTGCGATGCGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCTTCATC
175 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC-T-TA-------C-TATCCCTCATC
* * * *
15837161 AAACCTTGAGAACTCGCACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCC
230 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * *
15837226 TTTAAAGGGTCTGAAATGGGCACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
295 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* *
15837291 TTAGCTGAAATTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCA
360 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-
* * * *
15837355 AAAACTCCTTCCGAAAAAATTTTAAGAAATCCTGAACCGCAAAACA-TTTTAAAAATCGTGAAAT
424 AAAACTCCTTCC-AAAAAATTTTAAAAAATCCCGAACCGCAAAA-AGTTTCAAAAATCGTGAAAA
*
15837419 ATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
487 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
*
15837484 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGTCTAAACCCACCTACCACCC
552 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * **
15837549 TATCGATCCATGGCTTGCGCATCCCGTCTATCTAGCAAACGTAGTGCCCGCTCGCCCGCCCGCCC
617 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG--C-C-CGCCCGCCCGCCC
* * ** **
15837614 ACTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGTTCGGATTGA
678 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGA
** * * *
15837679 GGGTTGCGGCAGCAGGATCGGTAGCACACAAAGGGGGACCCGACCGATCCCCGGCTTGCGCATCC
743 GGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCC
* * ** * *
15837744 CACCCCTCTGGTCGGCTGATAGCCCGCATGCTCGTTTCGTGGGTTGACTTAG
808 CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
** ** ** * *
15837796 GCATACGGAGTTCATTCCCAGTCTAAGATTGGAATGGACCGAGGGTTGCGGTAGCACATGCTGGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTATGGCAGCACATGCTGGG
* * *
15837861 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATC-TCGGAGCATCG-CCGAGA
* * * * * * ** *
15837926 ACCTGACCGGCAGCATTAGGGTTTCGATGATTGGGGGGCCTGGGGGTGTGCGTGCGATGGGTGCT
129 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCAC-AT-GATG-T
* * ** ** *
15837991 GCTACTTGGCCCTTATA-TTGGTCC--ACTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTT
191 GCGA-TGGGTGCTGGTACTTGGCCCTTACTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * *
15838052 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTTTAAAATGGGGACAC
255 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* *
15838117 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTTAATTTTTTTGTGCATGCC
320 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* *
15838182 AA-AAAAATAAAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
385 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAATTTTAAA
* * * * *
15838246 AAATCACAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCGTGAA
449 AAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
*
15838311 ACTTCACGTGAAGGCTTAACGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
514 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* *
15838376 CAGAAATATGAAGATGTGCCTAAACCCAGCTACCACCCTATCGATCCACGGCTTACGCATCCCGT
579 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* *
15838441 CTCTCTGGCCGACGTAGTGCCCACCCGTCCTACCGCCCGCTCGTTTCATCGGTTGGCTTAGGCAT
644 CTCTCTGGCCGACGTAGTGCCCGCCCG--C--CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* ** * *** * *
15838506 ACGGAGTTCATTCCCAGTCTAAGATTGGACCAAACTGAGGGTTGCAATAGCAGAATCGACAGCAT
705 ACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCAC
* * * * * *
15838571 GTAGAGGGGGACCCGGTCGATCCCCGGATTGCACATCCCGCCCCTCTGGCCAGCTGAGCGCCCAC
770 GCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
15838636 ACGCTCGTTTCATGGGTTGACTTAG
835 ACGCTCGTTTCATGGGTTGACTTAG
* * *
15838661 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTATGGCCGCATATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTATGGCAGCACATGCTGGG
* * * * *
15838726 CTCGGGCATGTGCTAGTGCCGTATTTTTCTTCACCAGGGCACCATCTCCGGAGCAACGCCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCT-CGGAGCATCGCC-GAGA
* * * * * * * *
15838791 ACTTCACTGGCGGCATTGGGGTTCCGACAATCGGGGGGGCTGGGGGTATGCGCACATGATGTGCA
129 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
** * *
15838856 ATGGGTGCCAGTACTTGGCCC-TA-TATCCCTCATCAAACCTTGAGAACTCACATCCCCTTAAA-
194 ATGGGTGCTGGTACTTGGCCCTTACTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
*
15838918 AGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
259 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* *
15838983 TTCAAATGGTCACAAAATCTTGTACACTACGAG-TTGTAGCTGAATTTTTTTGTGCATGCCAACA
324 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* * *
15839047 AAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCATCCAAAATAATTTTAACAAAT
389 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA-AATTTTAAAAAAT
* * * * * * *
15839112 CCTGAATCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCTCGCCATTAAACTT
453 CCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* ** * * *
15839177 CACATGAAGGCTTAAGGGATGATTGTATAAATTTACAAGCCA-ACAAAATGGCATTGGCACGTAG
518 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA-AAAATGGCATTGGCATGCAG
* * *
15839241 AAATATGAAGATGTGCCTAAACCAACCTACCACCCTATTGATCCACGGCTTGCACATCCCGTCTC
582 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * * *
15839306 TCTGGCAGGCGTAGTGCCCACCCGCCCGCCCGCCCACTCGTTTTGTCGGTTGCCTTAGGCATACG
647 TCTGGCCGACGTAGTG----CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * * ** *
15839371 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGAGTCGCGATAGCAGGATCGACAGCACGGA
708 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCA
* * *
15839436 GAGGGGGACCCGGCCGATCCCTGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACG
773 GAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
* * * *
15839501 TTCATTTCGTGAGTTGACTTAG
838 CTCGTTTCATGGGTTGACTTAG
* * * * * * ** *
15839523 TCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGAGTTGCGGCTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTATGGCAGCACATGCTGGG
* * ** * * *
15839588 CTCGAGCATGTGCTGGTGTCGCATTTTTCTTCGCCAAGGCACCATCGCCGAAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATC-TCGGAGCATCGCC-GAGA
* ** * * * * *
15839653 ACCTTACCAACGGCATTGAGGTTTCGACGATCGGAGGGGCCAAGGGGGGTTGTCCACACATGATT
129 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGG-GGGGCC--GGGGGG-TGTGCGCACATGATG
*
15839718 TACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
190 TGCGATGGGTGCTGGTACTTGGCCC-T-TA--------CTATCCCTCATCAAACCTCGAGAACTC
* *
15839783 ACACCCACTTAAAGAGCATTTGAGA-TTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAA
245 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
15839847 ATGGGCACACTTTTTTCAAATGGTCACAAAATCTTGTACACTACGAG-TTGTAGCTGAATTTTTT
310 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
15839911 TATGCATGCCAAC-AAAATACAAGGATCATGTCTACCAAG-TT-GGGCCAAAACTCCATCCAAAA
375 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
* * * * *
15839973 TAATTTTAACAAATCCCAAACTC-TAAAAAGTTTCAAAAAATCGTGAAAAATAGAAAATGAGTTG
440 -AATTTTAAAAAATCCCGAAC-CGCAAAAAGTTTC-AAAAATCGTGAAAAATAGAAAACGAGTCG
** * ** *
15840037 TCTCACCATTAAACTTCACGTGAAGGCTTAAGGGATGATTGTATAAATTTAACAAAGCCATAAAA
502 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT-AC-AAGCCATAAAA
* * * ** * *
15840102 ATGGCATTGCCACGTAGAAATATGAAGATACGCC-AAACCCACTTGCCACCCTATCGATCCACGG
565 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * ** * *
15840166 CTTGCGCATCCCATCTCTCTGGCCTATGTAGTG--C-CCC-CTTGCCCTCTCGGTTCGTCGGTTT
630 CTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGG-TT
*
15840227 GGCTTAGGCATACGAAGTTCATT-CCAGTCTAAGAT-----C--A--GA----T-----AGC---
694 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGG
* * * *
15840270 AT-----GCA---A-AGGGAGACTCGGCCGATCCCCGGCTTGCGCATACCGCCCCTC--GCCGGT
759 ATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * *
15840324 TGAGCGCTCGGACGCTCATTTCGTGGGTTGACTTAG
824 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
* **** * ** * * * *
15840360 GCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTAATTCCCAGTCTAAGATCGAACCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-CAGACCGGA--CCGAGGGT--TAT-G-GCAGCAC
* * * ** *
15840425 TGATGCTAGGCTCGAGG-ATGTGCTGCTACCATATTTTTCTTCACCGGGGCACCA--TC--A-C-
58 --ATGCTGGGCTCG-GGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCTCGGAGCA
** * *
15840483 -CG--GAGAACCTGACCGATGGCATTGGGATGCCGGA-GATC-GGGGGCCGGGGGGTGTGCGCAC
120 TCGCCGAGAACCTGACCGGCGGCATTGGGGTTCC-GACGATCGGGGGGCCGGGGGGTGTGCGCAC
* * *
15840543 ATGATGTGCGATGGGTTCTGGTACTTGGCCTTTATATTGAACCCCTATCCCTCATCAAACCTTGA
184 ATGATGTGCGATGGGTGCTGGTACTTGGCC-----CTT--A---CTATCCCTCATCAAACCTCGA
* * *
15840608 GAACACACA-CCCCTTAAAGAACATTTGAGA-TTTACAGGTTTGCCGCCAGTAGCCATTAAAGTG
239 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* *
15840671 TCTGAAATGGGGACACTTTTTTCAAATGGTCCCAAAATCTTGTACACTTTGAGTTTTTAGCTGAA
304 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* *
15840736 -TTTTTTGTGCACGCCAACAAAAATACAAGGATCACGTCTACCAACTTTGGGGCCAAAACTCCTT
369 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-T
* * * *
15840800 TCAAAAAAATTTTAAAAAAGCCCGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
433 TCCAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
*
15840865 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAA
498 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* *
15840930 AAATTGCATTGGCAGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
563 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * *
15840995 GGCTTGCGCATCCTGTCTCTCTGGCCGACCTAGTGCCTGCCCGCCCGTTCGCCCTCTCGTTTCGT
628 GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG-CC---CGCCCGCTCGTTTCGT
* * * * ** * *
15841060 CAGTTGGCTTAGGCGTACGAAGTTCATTCCTAGTCTAAGATCACACCAGACCGAGGGTTGTGGCA
689 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCA
* *
15841125 GCAAGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
754 GCAGGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * *
15841190 CCGGTTGAGCGCCCGCACGCTCGTTTTATGGTTTGACTTAG
819 CCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
* * *
15841231 GCATGCGAAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCTAGTCTAAGATCGGACCGAAC
1 GCATACGGAGTTCATTCCCAG--T---C-TA---AG---------A-TC--AGACCGGACCG-A-
** * ** * * * * *
15841296 CGAGTGTTGCGGCAGCACATGCTAGGCTCGAACCTATGCTGGTGCTGTATTTTTCTTCGTCGGGG
43 -G-G-GTTATGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGG
* * *
15841361 CACCAT-T----GC--CG--GAGAACCTGATCGACGGCACTGGGGTTCCGACGATCGGGGGTGCC
105 CACCATCTCGGAGCATCGCCGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGG-GCC
* *
15841417 GGGGGGTGTGCGCACATGATGTGCGGTGGGTGCTAGTACTTGGCCCTTATATTGGGCCCCTATCC
169 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC-T-TA--------CTATCC
*
15841482 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCA
224 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* **
15841547 GTAGCCATTAAAGTGTCTGAAATGGGGACAGTTTTTTCAAATGGTCACAAAATCTTGTACACCAC
289 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * * * *
15841612 GCGGTTTTTGGCTGAAATTTTTTTGTGCATGACAAAAAAAATACAAGGATCACGTCAACCAAGTT
354 G-AGTTTTTAGCTG-AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* ** * *
15841677 TGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATTTCAAACTGCAAAAAGTTTCAAAAATCG
417 TGGGGCCAAAACTCC-TTCCAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCG
*
15841742 TGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
481 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * * * *
15841807 GAATTTAGAAGCCATAAAAATGGCATTGGCATGTAGAAATATGATGATATGCCTAAGCCCACCTA
546 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * * *
15841872 CCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCTGCCCGCCCAC
611 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGC
* * * * *
15841937 CCGCTCGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGAT-TGACCCAGAC
676 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CCGGAC
* * * * * *
15842001 CAAGGGTTACGGCAGCAGGATCGACAGCATGTAGAGGGGGACCCGACCGATCCCCGGCTAGCGCA
740 CGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCA
* *
15842066 TCCCGCCCCTCAT-GTCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
805 TCCCGCCCCTC-TGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
*
15842121 GCATACGGAGTTCATTCCTAGTCTAAGCATATAGAGTTCATTGCCAGTCTAAGATCGGACCAGAT
1 GCATACGGAGTTCATTCCCAG--T---C-TA-AGA--TCA--G--A--C------CGGACC-G--
* * * * * * *
15842186 CAAGGGATGTGACAGCACATGCTAGGCTCGGGCATGTGCTGGTGACGCATTTTTCTTCGTCGGGC
42 --AGGGTTATGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGG
* * * *
15842251 CACCATCGTCGGAACATCACCGGAGAACCTGACCGGCGGCATTGTGGTTCTGACGATCGGAGGGG
105 CACCATC-TCGGAGCATCGCC-GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGG-GGGG
* *
15842316 CCGAGCGGGTGTGCGCACATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTA
167 CCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC-T-TA--------CTA
*
15842381 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTG
221 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
15842446 -CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAATCTTGTACA
286 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC-AAAATCTTGTACA
** * * * *
15842510 CCCCGAG-TTTTAGCTGAATTTTTTTGTCCA-CCCAACAAAAATACAAGGATCTCGTCTACC-AT
350 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * * * * *
15842572 TTTGGGTCGAAAACTACTTCCAAAAAAATTTAAAAAATCCTGAACAGC-AAAAGTTTCAAAAATC
415 TTTGGGGCCAAAACTCCTTCCAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATC
* *
15842636 GTGAAGAATAGAAAACGAGTCGTCTTGCCATGAAAACATCACGTGAAGGCTTAAGGGACCATTGT
480 GTGAAAAATAGAAAACGAGTCGTCTTGCCATG-AAACTTCACGTGAAGGCTTAAGGGACCATTGT
* *
15842701 ATGAATTTAC-AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAATCCACC
544 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
*
15842765 TACCACCCTATCGATCCACGGCTTGCGCATCCCTGTCTCTCTAGCCTG-CGTAGTGCCCACCGCC
609 TACCACCCTATCGATCCACGGCTTGCGCATCCC-GTCTCTCTGGCC-GACGTAGTG--C-CCG--
15842829 ACCCGCCACCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
667 -CCCG-C-CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * ** * * *
15842894 TTGGA-CAGATTGAGGGTTGTGGCAGCAGGA-CCAGCAGCACGCAGAGGGGGACCCGACCGATCC
729 TCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGA-CAGCACGCAGAGGGGGACCCGGCCGATCC
* ***
15842957 CCGACTTGCGCATCCCGCCCCTC-AATCGGCTGAGCGCCCGCACGCTCGTTTTCATGGGTTGACT
793 CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG-TTTCATGGGTTGACT
*
15843021 AAG
857 TAG
* *
15843024 GCATATGGAGTTCATTGGTCATTCCAGTCTAAGAT-AGGACCAGACCGAGGG--ATGTGCAGCAC
1 GCATACGGAGTTCA-T--TC---CCAGTCTAAGATCA-GACCGGACCGAGGGTTATG-GCAGCAC
* * * *
15843086 ATGCTAGGCTCGAGCATGTGCTGGTGACGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATC
58 ATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATC-TCGGAGCATC
* * *
15843151 ACCGGAGAACCTAACC-GCGGCATTGGGGTTCCGACGATCGGAGGGGCCGGGGGGGTGTGTGCAC
122 GCC-GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGG-GGGGCC-GGGGGGTGTGCGCAC
* *
15843215 ATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATATTTGCCGCCTATCCTTCATCAAACCTCGA
184 ATGATGTGCGATGGGTGCTGGTACTTGGCCC-T-TA--------CTATCCCTCATCAAACCTCGA
*
15843280 GAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
239 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
*
15843345 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAA
304 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* ** *
15843410 TTTTTTT-TCCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGTACCAAAACTACTT
369 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * * ** * * *
15843474 CTGAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATTGTGAAAAATAAAAAATG
434 C--CAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
* *
15843539 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCCTAAGGGACCATTGTTTGAATTTACAAGCCATA
497 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
*
15843604 AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCTTAAACCCACCTACCACCCT-TCTGATCC
562 AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC-GATCC
* * * * * * *
15843668 ACAGCTTGCGCATCCTGTCTGTCTAGCCGGCGTAGTGCCCGCTCGCCCGCCCGCTCGTTTCGTCA
626 ACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCG
* * * *
15843733 ATTAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGC
691 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGC
* * * * * *
15843798 AGGATCGACAGCACGCA-ATAGAGGA-CCAGCCAATCCCCGACTTGCGCATCCTGCCCCTCTGGC
756 AGGATCGACAGCACGCAGA-GGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * **
15843861 CGGCTGAGCACCTGCACGCTCGTTTTGTGGGTTGACTTAG
820 CGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
* * * * *
15843901 GCATACAGAGTTCAATCCTAGTCTAAGCATATGGAGTTCATGCTAGTCAAGAAGGACCGAACCGG
1 GCATACGGAGTTCATTCCCAGTCT----A-A--GA--TCA-G--A--C----CGGACCG-A-GGG
* * * * * *
15843966 ATGTGGCAGGCAACATGCTAGGCTCGAGCAATGGTGCTGGTGACTGCCATTTTTC-TCACC-GGG
46 TTATGGCA-GC-ACATGCTGGGCTCGGGC-AT-GTGCTGGTG-CCG-CATTTTTCTTCGCCGGGG
* * * *
15844029 CACCATCGTCGGAGCATCATCGCGAGAACCTGACCGACTGGCCATTGGGGGTTCCGATGATCGGA
105 CACCATC-TCGGAGCATC-GC-CGAGAACCTGACCGGC-GG-CATT-GGGGTTCCGACGATCGGG
*
15844094 GGGCC-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATATTGCCCCTA
164 GGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC-T-TA------CTA
* *
15844158 TCCCTTCATCAAACCTCAGAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTATAGGTTTGC
221 TCCC-TCATCAAACCTC-GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
*
15844223 TGCCAGTAGCCATT-AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAT
284 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * *
15844287 ACCTCGAGTTTGTAAGCTTGAATTTTTTTGTGCATGCCAA-AGAAAATACAAGGATCACGTTTAC
349 ACTTCGAGTTT-TTAGC-TGAATTTTTTTGTGCATGCCAACA-AAAATACAAGGATCACGTCTAC
* * * * *
15844351 C-ATTTTGGGGTCAAAACTCCTTTCGAAATAATTTTAAAAAAATCCCGAACCGCAAAAAGTTTTT
411 CAAGTTTGGGGCCAAAACTCC-TTCCAAAAAATTTT-AAAAAATCCCGAACCGCAAAAAG-TTTC
* *
15844415 GAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGGA
473 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA-GGGA
* *
15844480 CCATTTGTATGAATTTACAAGCCATAAAAATGGCATTGGC-TCACAGAAATATGAAGATGTGCTT
537 CCA-TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT-GCAGAAATATGAAGATGTGCCT
* *
15844544 AAACCCACCTACCACCCTATTTGATCCACGGCTTGCGCATCCCG--TCTCTGGCCG-TGTAGT--
600 AAACCCACCTACCACCCTA-TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC
* * * * *
15844604 --GCCCGTCCG-CCGCTCGTTTCTTCAGTTGGCTTAGGTATATGGAGTTCATTCCCAGTCTAAGA
664 CCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * * * *
15844666 TCAGACCGGACCAAGGGTTGTGGTAGCAGGATC-ACCAGCACGTAGAGGGGGACCCGACCGATCA
729 TCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGA-CAGCACGCAGAGGGGGACCCGGCCGATCC
* * * * * * *
15844730 ACAGCTTACGCATCCCGCCCCTCCGGCCGACTGAGTGCCTGCACGCTCGTTTCATGGGTTGACTT
793 CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTT
15844795 AG
858 AG
*
15844797 GCATACGGTGTTCATTCCCAGTCTAAGCTTATGGAGTTCATTGCTAGTCTAAGATCGGACCAGAC
1 GCATACGGAGTTCATTCCCAGTCT-A----A--GA--TCA--G--A--C------C-G----GAC
** * * ** *
15844862 CGAGGGTTGCGGCAGCACATGCTAGGCTCGAGCATGTGCTGGTGATGCATTTTTCTTTGCC--GG
40 CGAGGGTTATGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGG
* *
15844925 -AGCA--TC--A-C--CG--GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCAGGGGGGCC
105 CACCATCTCGGAGCATCGCCGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCC
*
15844980 GAGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTT-GCCCTTATATTGGCCCCTATC
169 --GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC-T-TA-------CTATC
*
15845044 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCC
223 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
*
15845109 AGTAGCCATTAATGTGTCTGAAATGGGGACACTTTTTTTCAAATGGTCAC-AAATCTTGTACACT
288 AGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACT
*
15845173 TCGAGTTTTTAGCTGAATTTTTTTGTGCACGCCAACAAAAATACAAGGATCACGTCTA-CAAGTT
352 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
** * * * **
15845237 TGGGGTTAAAACTCCTTCCGAAAAAAATTTTAAAAAAAACTCGAACCG-TAAAAGTTT-TGAAAT
417 TGGGGCCAAAACTCCTTCC--AAAAAATTTT-AAAAAATCCCGAACCGCAAAAAGTTTCAAAAAT
* * *
15845300 CCT-AAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGT
479 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
*
15845364 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACC
544 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
* * * * * * * *
15845429 TACCACCTTATCGATCCATGGCTTGCGTATCCCATCTCTCTGGCAGGCGTTGTGCCCGCCCGGCC
609 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCC
15845494 GCC
674 GCC
15845497 TGCCCGCCCG
Statistics
Matches: 11164, Mismatches: 1348, Indels: 982
0.83 0.10 0.07
Matches are distributed among these distances:
830 153 0.01
831 157 0.01
832 78 0.01
833 40 0.00
834 16 0.00
835 2 0.00
836 28 0.00
837 62 0.01
838 26 0.00
839 69 0.01
840 1 0.00
841 5 0.00
842 1 0.00
843 3 0.00
844 3 0.00
845 4 0.00
846 1 0.00
847 40 0.00
848 5 0.00
851 3 0.00
852 1 0.00
856 2 0.00
857 370 0.03
858 372 0.03
859 11 0.00
860 4 0.00
861 47 0.00
862 889 0.08
863 412 0.04
864 109 0.01
865 567 0.05
866 172 0.02
867 116 0.01
868 4 0.00
869 72 0.01
870 28 0.00
871 61 0.01
873 5 0.00
874 2 0.00
875 75 0.01
876 162 0.01
877 224 0.02
878 337 0.03
879 61 0.01
880 37 0.00
881 253 0.02
882 283 0.03
883 108 0.01
884 70 0.01
885 85 0.01
886 132 0.01
887 78 0.01
888 120 0.01
889 536 0.05
890 488 0.04
891 88 0.01
892 22 0.00
893 182 0.02
894 607 0.05
895 404 0.04
896 307 0.03
897 291 0.03
898 389 0.03
899 105 0.01
900 434 0.04
901 391 0.04
902 260 0.02
903 324 0.03
904 227 0.02
905 134 0.01
906 3 0.00
907 2 0.00
909 3 0.00
911 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (859 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTATGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCTCGGAGCATCGCCGAGAAC
CTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTACTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTAAAAAATCCC
GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
GCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGA
CCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
ATGGGTTGACTTAG
Found at i:15840396 original size:26 final size:26
Alignment explanation
Indices: 15840360--15840412 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15840350 GTTGACTTAG
*
15840360 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTAATTCCCAGTCTAA
15840386 GCATACAGAGTTAATTCCCAGTCTAA
1 GCATACAGAGTTAATTCCCAGTCTAA
15840412 G
1 G
15840413 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTAATTCCCAGTCTAA
Found at i:15842151 original size:26 final size:26
Alignment explanation
Indices: 15842121--15842173 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15842111 GTTGACTTAG
*
15842121 GCATACGGAGTTCATT-CCTAGTCTAA
1 GCATACAGAGTTCATTGCC-AGTCTAA
*
15842147 GCATATAGAGTTCATTGCCAGTCTAA
1 GCATACAGAGTTCATTGCCAGTCTAA
15842173 G
1 G
15842174 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTGCCAGTCTAA
Found at i:15848542 original size:894 final size:892
Alignment explanation
Indices: 15845584--15850098 Score: 5259
Period size: 905 Copynumber: 5.1 Consensus size: 892
15845574 TCCCCAGGAT
* * * *
15845584 GCACGCTCGTTTAATGGTTTGACTTAGGCATATGGAGTTTATTCCCAGTCTAAGCATAC-GAAGT
1 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAG-AGT
*** * * *
15845648 TCATTCCCAGTCTAAGATC-GAAATAGACCGAGGGTTCT-AGCAGCACATGCTGGGCTCGGGCAT
65 TCATTCCCAGTCTAAGATCGGACCGA-ACTGAAGGTTGTGA-CAGCACATGCTGGGCTCGGGCAT
* * * * * * *
15845711 GTGCTGGTGCAGCATTTTTCTTCATCGGGGCACCAACGCCGGAGCATCGTCGGAGAACCTGACCA
128 GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG-CGGAGCATCGCCAGAGAACCTGATCG
** * * * * * *
15845776 GCGGCATTGGGGTTTTGACAATC-CGGGGGCCGGGGGGTATGCGC-TATGATATGCGATGGGTGG
192 GCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT-G
* * *
15845839 CT-GTCCTTGGGCCCTTATATTTGCCCCCTATCCCTCATCAAACCTCGAGGAACCTCACACCCCC
256 CTGGTACTT-GGCCCTTATA-TTGGCCCCTATCCCTCATCAAACCTTGA-GAA-CTCACACCCCC
**
15845903 TTAAAGAGCATTAAAGATTTTTACATGGTTTGGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
317 TTAAAGAGCATTTGAGA-TTTTACA-GGTTT-GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
15845968 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
379 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * * ** * *
15846033 ACGCAAAAAAAAAATGCAAGGATCACGTCTACCAAGTTTATGGCCAAAAATCCTTTCAAAAAGAA
444 ATGC-CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA-AA
* * * *** *
15846098 TTTTAAAAGATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTT
507 TTTTAAAAAATCTCGAACC-TCAAAAGTTTCAAAAATAACGAAAAATAGAAAACGAGTCGTCTTG
* *
15846163 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
571 CAATGAAACTTCACGTGAACGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
15846228 TAGCATGCAGAAATATGAAGATGTGCCTAAACCTACCTACCACCCTATCGATCCATGGCTTGCGC
636 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *
15846293 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCATGCCCGCCCGCTTGTTTCGTCGGTTGGCT
701 ATCCCGTCTCTCTGGCCGACGTAGT----G-CC-C--GCCCGCCCGCTCGTTTCATCGGTTGGCT
* * ** * * * *
15846358 TAGGCATACGGAGTTCATTCCTAGAGTAAGATCAGATC-GGACCGAA-GGTTACGGTAGCAGGAT
758 TAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGA-CAGAATC-AAGGGTTGCGGCAGCAGGAT
* * * * *
15846421 C-AGCTA-CACACAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCAGC
821 CGA-C-AGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCAGC
15846484 TGAGCGCCC
884 TGAGCGCCC
* * * *
15846493 GCACACTTGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA-CAT-C-GA---
1 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTT
* * *
15846552 -A---CCAGACT--GA--GG---G---T-----TTCG-G-TAGCACATGCTGGGCTCAGGCATGT
66 CATTCCCAGTCTAAGATCGGACCGAACTGAAGGTT-GTGACAGCACATGCTGGGCTCGGGCATGT
* * * ****
15846596 GCTGGTGCCGTATTTTTCTTCTTC-GGGCACCATCATCGGAGCATCATTGGAGAACCTGA-CTGG
130 GCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-GCGGAGCATCGCCAGAGAACCTGATC-GG
* * * *
15846659 TGACTTTGGGGTT-CGGTGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
193 CGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* *
15846722 GGTACTTGG--C---------CCCCTATCCCTCCTCAAACATTGAGAACTCACACCCCCTTAAAG
258 GGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAG
* *
15846776 AGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATTGGGACACTTTT
323 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* *
15846841 TTCAAAAGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTGTTTT-TGCATGCCAAA
388 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT-TTTTGTGCATGCCAAC
** * *
15846905 AAAAATACAAGGATCACGTCTACCAAGTTTGGGATCGAAAGTCCTTCCAAAAAAATTTTAAAAAA
452 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAA
* * * * *
15846970 TC-CAGAACCCCAAAATGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAAC
517 TCTC-GAACCTCAAAA-GTTTCAAAAATAACGAAAAATAGAAAACGAGTCGTCTTGCAATGAAAC
* * **
15847034 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATTGGCACACA
580 TTCACGTGAACGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
*
15847099 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCT
645 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
** * * *
15847164 CTCTGGCC-AGCGTAGTGCCCTTCCTCCCGCTCGTTTCGTCAGTTGGCTTAGGCATAC-AGAGTT
710 CTCTGGCCGA-CGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGA-AGTT
* ** * ** * * *
15847227 CATTCCTAGTCTAAGATTGGACAGGATTGAGTGTTGCGGCAGCAGGATCGACAGCACGTAGTGGG
773 CATTCCCAGTCTAAGATCAGACAGAATCAAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGG
* * * * * *
15847292 GGACCCGACCGATCCCCGACTTGCACATCCTGCCCCTTTGGCCGGCTGAGCGCCC
838 GGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCAGCTGAGCGCCC
** * **
15847347 GCACGCTCGTTTTGTGGGTTGACTTAGGCGTACGGAGTTCATTCCCAGTCTAAGCATATGGAGTT
1 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTT
* * * * * *
15847412 CATTCCCAGTCTAAGATCAGACTGGACTG-AGCGTTG-CAGTAGCACATGCTGGGCTTGGGCATG
66 CATTCCCAGTCTAAGATCGGACCGAACTGAAG-GTTGTGA-CAGCACATGCTGGGCTCGGGCATG
* * * *
15847475 TGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACCGG
129 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-GCGGAGCATCGCCAGAGAACCTGATCGG
* * * * *
15847540 TGGTATTGGGGTTCCGGCGATCGGTGGGGCCGGGGGGTGTGCACACATGATGTACGATGGGTGCT
193 CGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* *
15847605 GGTACTTGGCCCGTATATTGGCCCCATATCCCTCATCAAACCTTGAGAACTCACA-CTCCTTAAA
258 GGTACTTGGCCCTTATATTGGCCCC-TATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAA
*
15847669 GACCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
322 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * * **
15847734 TTTCAAATGGTCACAAAATCTTGTACACTCCGAGTTTTTGGCTGAATTTTTTTATGCACACCAAC
387 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * *
15847799 AAAAATTCAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCTTTCCAAAAAAATTTTAAAAAA
452 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAA
* * * *
15847864 TCTCGAACCATCAAAAGTGAT-GAAAATCACGAAAAATAGAAAATGAGTCGTCTTGCAATGAAAC
517 TCTCGAACC-TCAAAAGT-TTCAAAAATAACGAAAAATAGAAAACGAGTCGTCTTGCAATGAAAC
* *
15847928 TTCATGTGAAGGCTTAAGGG-CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
580 TTCACGTGAACGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
* *
15847992 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATTCCGTCT
645 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * * *
15848057 CTCTAGCCGATGTAGTGTCCGCCCGCCCGTTCATTTCATCGGTTGGCTTAGGCATACGAAGTTCA
710 CTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCA
* * * * * *
15848122 TTCCCAATCTAAGATCAGATC-GAACCAAGGGTTGTGGCAGCAGGATTGACAGCACACGGAGGGG
775 TTCCCAGTCTAAGATCAGA-CAGAATCAAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGG
* * * * * * *
15848186 GACTCGGCTGATCCCCGGCTTGCGCATCCCGCCTCTCTAGCCAGTTGAGCGCCC
839 GACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCAGCTGAGCGCCC
* ** * *
15848240 GCACGCTCGTTTCGTGGGTTGACTTAGGCATATAGAGTTCATTTCCAGTCTAAGCTTACAGAGTT
1 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTT
* *
15848305 CATTCCCAGTCTAAGATCGGACCGAACCGAAGGTTGTGACAGCACATGCTAGGCTCGGGCATGTG
66 CATTCCCAGTCTAAGATCGGACCGAACTGAAGGTTGTGACAGCACATGCTGGGCTCGGGCATGTG
* * *
15848370 CTGGT-CCGTATTTTTCTTTG-CTGGAGCACCATCGCAGGAGCATCGCCAGAGAACCTGATCGGC
131 CTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGC-GGAGCATCGCCAGAGAACCTGATCGGC
* *
15848433 GGCATTGGGGTTCCAGG-GATCGGGGGGGTCGGGGGGTGTGTGTGCACATGATGTGCGATGGGTG
194 GGCATTGGGGTTCC-GGCGATCGGGGGGG-CCGGGGG-GTGTGCGCACATGATGTGCGATGGGTG
* *
15848497 CTGGTACTTGGCCCTTATATTGGCCACCTATCTCTCATCAAACCTTGGGAACTCACACCCCCTTA
256 CTGGTACTTGGCCCTTATATTGGCC-CCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTA
* * *
15848562 AAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAATTGGGGACACT
320 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* *
15848627 TTTTTCAATTGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
385 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * * * *
15848692 ACAAAAATACAAGGATGATGTCTACCAACTTTGGGCCCAAAACTCCTTTCGAAAAAATTTTAAAA
450 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAA
* * * * * *
15848757 AATCCCAAACCGTAAAAAGTTTCAAAAATAATGAAAAATAGAAAACGAGTCATCTTGCTATGAAA
515 AATCTCGAACC-TCAAAAGTTTCAAAAATAACGAAAAATAGAAAACGAGTCGTCTTGCAATGAAA
*
15848822 CTTCACGTGAACGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
579 CTTCACGTGAACGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* * *
15848887 AGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCACGGCTTGTGTATCCCGTC
644 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
*
15848952 TCTCTGGCCGGCGTAGTGCCCGCCCACCCGCCCGCCCTCTCGTTTCATCGGTTGGCTTAGGCATA
709 TCTCTGGCCGACGTAGTGCCCG----CCCGCCCG----CTCGTTTCATCGGTTGGCTTAGGCATA
* * * * * * * * **
15849017 TGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGCTGCAGTAGCAGGATCGGTAGCACG
766 CGAAGTTCATTCCCAGTCTAAGATCAGACAGAATCAAGGGTTGCGGCAGCAGGATCGACAGCACG
* * * * * *
15849082 CAAAGGGGGGCCCGACCGATCCCCGGCTTAAGCATCCCGCCCCTCTGG-TAGGCTAAACAG-CC
831 CAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCA-GCTGAGC-GCCC
** *
15849144 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTC-GTCTAAGCATATGGACT
1 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC-CAGTCTAAGCATACAGAGT
* * * * *
15849208 TCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGACAGCACATGCTGGGGTCGAGCATGT
65 TCATTCCCAGTCTAAGATCGGACCGAACTGAAGGTTGTGACAGCACATGCTGGGCTCGGGCATGT
* *
15849273 GGTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCAGAGAACCTGATCGGC
130 GCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG-CGGAGCATCGCCAGAGAACCTGATCGGC
* * * * *
15849338 AGCATTGGGGTTCCGACGATCGGGGGGACCGGGAGGGGTGTGAGCACATGATGTGCAATGGGTGC
194 GGCATTGGGGTTCCGGCGATCGGGGGGGCC-GG-GGGGTGTGCGCACATGATGTGCGATGGGTGC
* * * * * *
15849403 TGGTATTTGGCCCTTATATTGGCTGCATATCCCTCATCAAACCTCGAGAACTCACAACCCCTTGA
257 TGGTACTTGGCCCTTATATTGGC-CCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAA
* * * * * *
15849468 AGATCATTTAAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAATGTCTGAAATGGAGACATTT
321 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
15849533 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
386 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* **
15849598 CAAAAATACAAGGATCACGTCTACCAATTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAA
451 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAA
* * * * *
15849663 ATTTC-AAACTGCAAAAAGCTTC-AAAA-AACGTGAAAAATAGAAAACGAGTCCTCTTGCGATGA
516 ATCTCGAACCT-C-AAAAGTTTCAAAAATAAC--GAAAAATAGAAAACGAGTCGTCTTGCAATGA
* *
15849725 AACTTCACGTGAACGCTTAAGAGACCATTGTATGAATTTGCAAGCCATAAAAATGGCATTGGCAT
577 AACTTCACGTGAACGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * *
15849790 GCACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCGACGGCTTGCACATCCCG
642 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* *
15849855 TCTCTCTGGCCGACGTAATGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGT
707 TCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGAAGT
* * * * * ** ** *
15849920 TCATTCCCAGTCTAAGATCGGACCGAATAAAGGGTTACGACAATAGGATCGGTAGCATGCAGAGG
772 TCATTCCCAGTCTAAGATCAGACAGAATCAAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGG
* * *
15849985 GGGACCCGGCTGATCCCCGGCTTACGCATCCCGCCCCTCTGGTC-GACTGAGCGCCC
837 GGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCAG-CTGAGCGCCC
* * *
15850041 GCCCGCCTGCTCGTTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
1 G--C-AC-GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
15850099 ATTGGACCAG
Statistics
Matches: 3114, Mismatches: 384, Indels: 224
0.84 0.10 0.06
Matches are distributed among these distances:
853 3 0.00
854 177 0.06
855 4 0.00
856 1 0.00
857 4 0.00
858 1 0.00
861 7 0.00
862 200 0.06
863 48 0.02
864 100 0.03
865 9 0.00
866 8 0.00
867 26 0.01
868 4 0.00
869 21 0.01
871 1 0.00
874 1 0.00
878 1 0.00
879 3 0.00
880 44 0.01
881 72 0.02
882 69 0.02
883 92 0.03
884 2 0.00
885 1 0.00
891 2 0.00
892 69 0.02
893 370 0.12
894 336 0.11
895 288 0.09
896 123 0.04
897 130 0.04
899 7 0.00
900 10 0.00
901 54 0.02
902 1 0.00
903 5 0.00
904 244 0.08
905 520 0.17
906 6 0.00
907 2 0.00
908 3 0.00
909 45 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (892 bp):
GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTT
CATTCCCAGTCTAAGATCGGACCGAACTGAAGGTTGTGACAGCACATGCTGGGCTCGGGCATGTG
CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCGGAGCATCGCCAGAGAACCTGATCGGCGG
CATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
ACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGC
ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTC
GAACCTCAAAAGTTTCAAAAATAACGAAAAATAGAAAACGAGTCGTCTTGCAATGAAACTTCACG
TGAACGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
CCGACGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCA
GTCTAAGATCAGACAGAATCAAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGA
CCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCAGCTGAGCGCCC
Found at i:15849201 original size:26 final size:26
Alignment explanation
Indices: 15849171--15849230 Score: 72
Period size: 26 Copynumber: 2.4 Consensus size: 26
15849161 GTTGACTTAG
*
15849171 GCATACGGAGTTCATTCCTC-GTCTAA
1 GCATACGGACTTCATTCC-CAGTCTAA
*
15849197 GCATATGGACTTCATTCCCAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
15849223 G-AT-CGGAC
1 GCATACGGAC
15849231 CGGACTGAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
24 4 0.13
25 3 0.10
26 23 0.77
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGACTTCATTCCCAGTCTAA
Found at i:15850151 original size:163 final size:162
Alignment explanation
Indices: 15849874--15850257 Score: 438
Period size: 163 Copynumber: 2.4 Consensus size: 162
15849864 CCGACGTAAT
15849874 GCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
1 GCCCGCCCG-CCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * * *
15849939 GGACCGAATAAAGGGTTACGACAATAGGATCGGTAGCATGCAGAGGGGGACCCGGCTGATCCCCG
65 GGACCGAACAAACGGTTACGACAACAGGATCGGCAGCACGCAAAGGGGGACCCAGCTGATCCCCG
* *
15850004 GCTTACGCATCCCGCCCCTCTGGTC-GACTGAGC
130 GATTACGCATCCCGCCCCTCTGG-CAAACTGAGC
* *
15850037 GCCCGCCCGCCTGCTCGTTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATT
1 GCCCGCCCGCC-GCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * ** * * *
15850102 GGACC-AGGCCAACGGTTGTG-CTAGCAGGATTGGCAGCACGCAAAGGGGGACCCAGTTGATCCC
65 GGACCGA-ACAAACGGTTACGAC-AACAGGATCGGCAGCACGCAAAGGGGGACCCAGCTGATCCC
* * *
15850165 TGGATTGCGCATCCCGCCCTTCTGGCAAACTGAGC
128 CGGATTACGCATCCCGCCCCTCTGGCAAACTGAGC
* * * * * *
15850200 GCCCG--C-ACGCTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAG
1 GCCCGCCCGCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
15850258 CATACGGAGT
Statistics
Matches: 190, Mismatches: 27, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
159 45 0.24
160 1 0.01
161 1 0.01
162 5 0.03
163 138 0.73
ACGTcount: A:0.19, C:0.30, G:0.29, T:0.22
Consensus pattern (162 bp):
GCCCGCCCGCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
GACCGAACAAACGGTTACGACAACAGGATCGGCAGCACGCAAAGGGGGACCCAGCTGATCCCCGG
ATTACGCATCCCGCCCCTCTGGCAAACTGAGC
Found at i:15850260 original size:26 final size:26
Alignment explanation
Indices: 15850231--15850283 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15850221 GTTGACTTAG
* *
15850231 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCACTCTAA
15850257 GCATACGGAGTTCATTCCCACTCTAA
1 GCATACGGAGTTCATTCCCACTCTAA
15850283 G
1 G
15850284 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCACTCTAA
Found at i:15853540 original size:26 final size:26
Alignment explanation
Indices: 15853504--15853555 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
15853494 TTGACTTTGT
15853504 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
15853530 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
15853556 ATCGGACCGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:15854900 original size:712 final size:717
Alignment explanation
Indices: 15853529--15855012 Score: 2381
Period size: 712 Copynumber: 2.1 Consensus size: 717
15853519 CCCAGTCTAA
* * *
15853529 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGTACTGAGGGTTGCAGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCAGCAGCACATGCTAGG
* * *
15853594 CTAGGGCATGTGCTGGTGCCGTATTTTTCTTCGCTGGGGCACCATTGTTGGAGCATCATCGGAGA
66 CTAGGGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCGTCGGAGCATCATCGGAGA
* * *
15853659 ACCCGACCGACGGTATTGGGGTTCCGGCGATTGGGGGGGCCGGGGGGTATGCACACATGATGTGC
131 ACCCGACCGACGGCATTGGGGTTCCGACGATTCGGGGGGCCGGGGGGTATGCACACATGATGTGC
* *
15853724 GATGGGTGCTGGTACTTGGCCCTCATATTGGTCCCCTATCCCTCATCAAACCTCAAGAGCACACA
196 GATGGGTGCTGGTACTTGGCCCTCATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACACACA
15853789 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTGTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTGTGAAATG
* * *
15853854 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGATTTTTTAGCTGAATTTTTTTAT
326 GGGACACTTTTTTCAAATGGACACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTAT
* *
15853919 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGCCTACCAAGTTTGGGGCCAAAACTCCATCCAAAAAAA
* * **
15853984 TTTTTAAAAATCCCGAACCGTAAAAAGTTTGGAAAATCGTGAAAAATAGAAAACGAGCCCTCTTG
456 TTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGCCCTCTTG
15854049 CCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGATTTTACAAGCCATAAAAATGGAAT
521 CCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGATTTTACAAGCCATAAAAATGGAAT
* * *
15854114 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
586 TGGCATGCAGAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATCGACCCACGGCTTACGC
*
15854179 ATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGCCC-G-C-TCGTTTCGTCGGTTGGCTT
651 ATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGCCCAGCCGTCATTTCGTCGGTTGGCTT
15854241 AG
716 AG
* *
15854243 GCATATGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCAGCAGCACATGCTAGG
* *
15854308 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-ATCGGGGCACCATCGTCGGAGCATCATCGGAG
66 CTAGGGCATGTGCTGGTGCCGCATTTTTCTTCGCT-GGGGCACCATCGTCGGAGCATCATCGGAG
* * * * *
15854372 AACCTGACTGGCGGCATTGGGGTTCCGACGA-TCGGGGGG-CGGGGGGTGTGCGCACATGATGTG
130 AACCCGACCGACGGCATTGGGGTTCCGACGATTCGGGGGGCCGGGGGGTATGCACACATGATGTG
* * *
15854435 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTCATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACACAC
*
15854500 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTGTGAAAT
* * *
15854565 GGGGACACTTTTTTCAAATGGACACAATATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTT
325 GGGGACACTTTTTTCAAATGGACACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
* **
15854630 TGCATGCCAACAAAAATACAAGGATCACGCCTAGCAAGTTTGGGGCCAAAACTCCATCTGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGCCTACCAAGTTTGGGGCCAAAACTCCATCCAAAAAA
* * *
15854695 ATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTTAAAAATAGAAAACGAGTCGTCTT
455 ATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGCCCTCTT
* * * *
15854760 GCCTTGAAAGTTGACGTGAAGGCTTAAGGGACCATTGTATGCA-TTTACAAGCCATAAAAATGGA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATG-ATTTTACAAGCCATAAAAATGGA
*
15854824 ATTGGCATGCAGAAATATGAAGATGTCCCTAAACCCACCTACCTCCCTATCGACCCACGGCTTAC
584 ATTGGCATGCAGAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATCGACCCACGGCTTAC
* *
15854889 GCATCCCGTCTCTCTGGCCGATGTAGTGCCCGCCCGCCCGCCCAGCCGTTCATTTCGTCGGTTGG
649 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGCCCAGCCG-TCATTTCGTCGGTTGG
15854954 CTTAG
713 CTTAG
* *
15854959 GCATACGGAGTTCATTCCCAGTCTAAGCTC-AGACCAGACCGAGGGTTGCAGCAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGGACCGAGGGTTGCAGCAG
15855013 TAGGATCAGT
Statistics
Matches: 707, Mismatches: 56, Indels: 12
0.91 0.07 0.02
Matches are distributed among these distances:
712 483 0.68
713 10 0.01
714 144 0.20
715 1 0.00
716 69 0.10
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (717 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCAGCAGCACATGCTAGG
CTAGGGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCGTCGGAGCATCATCGGAGA
ACCCGACCGACGGCATTGGGGTTCCGACGATTCGGGGGGCCGGGGGGTATGCACACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTCATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACACACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTGTGAAATG
GGGACACTTTTTTCAAATGGACACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTAT
GCATGCCAACAAAAATACAAGGATCACGCCTACCAAGTTTGGGGCCAAAACTCCATCCAAAAAAA
TTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGCCCTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGATTTTACAAGCCATAAAAATGGAAT
TGGCATGCAGAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATCGACCCACGGCTTACGC
ATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGCCCAGCCGTCATTTCGTCGGTTGGCTT
AG
Found at i:15855154 original size:26 final size:26
Alignment explanation
Indices: 15855118--15855168 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
15855108 GTTGACTTAG
*
15855118 GCATACGGAGTTCATTCCCGATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
15855144 GCATACGGAGTTCATTCCCAATCTA
1 GCATACGGAGTTCATTCCCAATCTA
15855169 TGATCGGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:15855993 original size:904 final size:901
Alignment explanation
Indices: 15854243--15856087 Score: 2829
Period size: 904 Copynumber: 2.0 Consensus size: 901
15854233 GTTGGCTTAG
*
15854243 GCATATGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCAGCAGCACATGCTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCACATGCTGGG
* *
15854308 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCATCGGAGA
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCATCGGAGCATCATCGGAGA
* * * *
15854373 ACCTGACTGGCGGCATTGGGGTTCCGACGATCGGGGGGCGGGGGGTGTGCGCACATGATGTGCGA
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCGGGGGGTGTGCACACATGATGTGCAA
*
15854438 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
196 TGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
*
15854503 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGG
261 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* *
15854568 GACACTTTTTTCAAATGGACACAATATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTTTGC
326 GACACTTTTTTCAAATGGACACAATATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * **
15854633 ATGCCAACAAAAATACAAGGATCACGCCTAGCAAGTTTGGGGCCAAAACTCCATCTGAAAAAATT
391 AAGCCAACAAAAATACAAGGATCACGCCTACCAAGTTTGGGGCCAAAACTCCATCCAAAAAAATT
* * *
15854698 TTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTTAAAAATAGAAAACGAGTCGTCTTGCC
456 TTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCGTCTTGCC
* * * * *
15854763 TTGAAAGTTGACGTGAAGGCTTAAGGGACCATTGTATGCATTTACAAGCCATAAAAATGGAATTG
521 ATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTG
** * * *
15854828 GCATGCAGAAATATGAAGATGTCCCTAAACCCACCTACCTCCCTATCGACCCACGGCTTACGCAT
586 GCACACAGAAATATGAAGATGTCCCTAAACCAACCTACCACCCTATCGACCCACGGCTTACACAT
* * *
15854893 CCCGTCTCTCTGGCCGATGTAGTGCCCGCCCGCCCGCCCAGCCGTTCATTTCGTCGGTTGGCTTA
651 CCCGTCTCTCTGGCCGACGTAGTGCCCGCCAGCCCGCCCAGCCGCTCATTTCGTCGGTTGGCTTA
* * **
15854958 GGCATACGGAGTTCATTCCCAGTCTAAGCTCAGACCAGACCGAGGGTTGCAGCAGTAGGATCAGT
716 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGTAGGATCAAC
** * * *
15855023 AGCACGTAGAGGGGGACCTGACTGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCAGTTGAGCG
781 AGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGTTGAGCG
* *
15855088 CCTGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCGA-TCTAA
846 CCTGCACGCTCATTTCGTGGCTTGACTTAGGCATACAGAGTTCATT-CCGAGTCTAA
* * *
15855144 GCATACGGAGTTCATTCCCAATCTATGATCGGACCGGACCGAGGGTTGC-GACAGCACATGCTGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAG-CAGCACATGCTGG
* * *
15855208 GCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCA-CTGGGGCTCTATCATCGGAGCATCGTCGGA
65 GCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCATC-GGGGCACCATCATCGGAGCATCATCGGA
* * *
15855272 GAACCTGACCGATGGCATTGGGTTTTCGACGATCGGGGGGCCGGGTGGGGGTGTGCACACATGAT
129 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG-C--G-GGGGGTGTGCACACATGAT
15855337 GTGCAATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTA-CCTCTCATCAAACCTCGAGAAC
190 GTGCAATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCC-CTCATCAAACCTCGAGAAC
15855401 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
254 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * *
15855466 AAATGGGGACACTTTTTTCGAATGGTCACAA-ATCTTGTACACTTCGATTTTTTAGCTGAATTTT
319 AAATGGGGACACTTTTTTCAAATGGACACAATATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * *
15855530 TTTGTGCAAGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCCAA
384 TTTGTGCAAGCCAACAAAAATACAAGGATCACGCCTACCAAGTTTGGGGCCAAAACTCCATCCAA
** *
15855595 AAAAATTTTAAAAAATGTCGAACCGCAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCG
449 AAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCG
* *
15855660 TCTTGCCATAAAACTTCACGTGAAGGCTTAAGGTACCGTTGTATGAATTTACAAGCCATAAAAAT
514 TCTTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
15855725 GGAATTGGCACACAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCT
579 GGAATTGGCACACAGAAATATGAAGATGTCCCTAAACCAACCTACCACCCTATCGACCCACGGCT
* * * *
15855790 TGCACATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCAGCCCGCCC-TCTCGCTCGTTTCGTCGG
644 TACACATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCAGCCCGCCCAGC-CGCTCATTTCGTCGG
* * * * * *
15855854 TTGGCTTAGGCCTACGGAGTTCATTCCTAGTCTAAGATCAGATCGGATCAAGGGTTGCGGCAGTA
708 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGTA
** ***
15855919 GGATCAACAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCTTGCCCCTCTGGTTG
773 GGATCAACAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCA
*
15855984 GTTGAGCGCCTGCACGCTCATTTCGTGGCTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAA
838 GTTGAGCGCCTGCACGCTCATTTCGTGGCTTGACTTAGGCATACAGAGTTCATTCCGAGTCTAA
* *
15856048 GCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGACC
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACC
15856088 CCTTTAAAGA
Statistics
Matches: 850, Mismatches: 85, Indels: 15
0.89 0.09 0.02
Matches are distributed among these distances:
900 2 0.00
901 150 0.18
902 1 0.00
903 4 0.00
904 523 0.62
905 170 0.20
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (901 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCACATGCTGGG
CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCATCGGAGCATCATCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCGGGGGGTGTGCACACATGATGTGCAA
TGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGACACAATATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
AAGCCAACAAAAATACAAGGATCACGCCTACCAAGTTTGGGGCCAAAACTCCATCCAAAAAAATT
TTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCGTCTTGCC
ATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTG
GCACACAGAAATATGAAGATGTCCCTAAACCAACCTACCACCCTATCGACCCACGGCTTACACAT
CCCGTCTCTCTGGCCGACGTAGTGCCCGCCAGCCCGCCCAGCCGCTCATTTCGTCGGTTGGCTTA
GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGTAGGATCAAC
AGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGTTGAGCG
CCTGCACGCTCATTTCGTGGCTTGACTTAGGCATACAGAGTTCATTCCGAGTCTAA
Found at i:15860289 original size:26 final size:26
Alignment explanation
Indices: 15860253--15860304 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
15860243 TTGACTTAGT
15860253 CATAAGGAGTTCATTCCCAGTCTAAG
1 CATAAGGAGTTCATTCCCAGTCTAAG
*
15860279 CATACGGAGTTCATTCCCAGTCTAAG
1 CATAAGGAGTTCATTCCCAGTCTAAG
15860305 ATCGAACAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
CATAAGGAGTTCATTCCCAGTCTAAG
Found at i:15863239 original size:888 final size:876
Alignment explanation
Indices: 15856085--15863810 Score: 8371
Period size: 874 Copynumber: 8.7 Consensus size: 876
15856075 ATCAGATCGG
* * *
15856085 ACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
1 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTAAAAT
* * * *
15856150 GGGGACAATTTTTTCAATTGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
66 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTTTTTTG
*
15856215 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAA
131 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * *
15856280 ATTTTAAAAAATCCTGAACCGTAAAAAGTTTTAAAAATTGTGAAAAAAAAAAAACGTGTCGTCTT
196 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * * *
15856345 GCCTTGAAACTTGACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCA
261 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** * *
15856410 TTGGCACACAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCATGACTTGCG
326 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCG
* * * * * * *
15856475 CATCCCGTCTCTCTCGCCGACGTAGTGCCC-ACC-CC---CCACCCCCTCGTTTCGTCGGTTGGC
391 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGACCGCCTGTCCGCTCGCTCGTTTCATC-GATGGC
* * *
15856535 TTTGGCATACGGAGTTCACTCCCAGTCTAAGATC-GAACCAGACCGAGGGTTGCAGCAGCAGGAT
455 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCAAGGGTTGCAGCAGC--GAT
** * * ** * ** * *
15856599 CGACAGCAC-GTAGAGGGGGAC-C-C-GATCGATTGTCA-GCTTGTGCATCTAGCCCTTCTGGCC
517 -GGGAGC-CGGCAGAGGGGGACTCGCAGACCGA-TCCCAGGCTTGCGCATCCCGCCCCTCTAGCC
* *
15856659 GGCTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAA
579 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA-TTCC---C--A
* * * * *
15856724 GCATGTAGAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGTGGTAGTACATGCTGGG
638 G--TCT--A--T-A----CA-TC--AGA-C---C-GGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * * *
15856789 CTCGAGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGAACCATTG-CTGGAGCATCGCCAGAG
684 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCTCGGGGCACCATCGTC-AGAGCATCGCCGGAG
* * **
15856853 AACCTGACCGACGGCAATGGGGTTCCGGCGATCG-GGGGGTCAAGCGGGGG-GTGAACACATGAT
748 AACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGG-C--G-GGGGGTGTGCGCACATGAT
* *
15856916 GTGCGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
809 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
15856981 CAC
874 CAC
* * * *
15856984 ACCCCC-TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCACTAAAGTGTCTGAAAT
1 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTAAAAT
* *
15857048 -GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTA
66 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTTTTTTG
* *
15857111 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGAGGCCAAAACTCCATCCGAAAAA
131 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * *
15857176 ATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGTGTCGTCTT
196 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
15857241 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
261 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
15857306 TTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
326 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCG
* * *** ** * * *
15857371 CATCACGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCGCAAGCTCGTATCGTCGGTTGGC
391 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGACCGCCTGTCCGCTCGCTCGTTTCATC-GATGGC
* * * * * *
15857436 TTAGTCATACGGAGTTCATTCCTAGTCTAAGATTAAACCAGATCGAGGGTTGC-GACAGCAGGAT
455 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAG-CAGC--GAT
* ** * * *
15857500 CGGCAGCAAGCAGAGGGGGAC-C-C-GATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
517 -GGGAGCCGGCAGAGGGGGACTCGCAGACCGATCCCAGGCTTGCGCATCCCGCCCCTCTAGCCGG
*
15857562 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA-AG
581 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTATAC
* * *
15857626 ATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT-AC-CATTTT
646 ATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT
* * * * * * * * *
15857689 TCTTCGTCGGGGCACCATCATCGGAGCATCACCAGAGAACCTGACCGGCGACATTGGGGTTCAGG
711 TCTTCCTCGGGGCACCATCGTCAGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGA
*
15857754 CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
776 CGATCGAGGGGG-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
*
15857819 TTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
840 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
15857856 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAAT
1 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTAAAAT
* * * * * *
15857921 GGGGACACTTTTTTCGAGTGGTCACAAAATCTTGTACGCTTGGAGTTTTTAGTTGAATTTTTTTG
66 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTTTTTTG
* *
15857986 TTCATGCCAAAAAAAATACAAGGATCACGTCTAACAAGTTTGGGG-CAAAACTCCTTCCGAAAAA
131 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * * *
15858050 ATTTTAAAAAATCCCGAACCATAATAAGTTTAAAAAATCCTGAAAAATAAAAAACGAGTCATCTT
196 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
15858115 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAATGGCA
261 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** * * *
15858180 TTGGCACACAAAAATATGAAGATGTGCTTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
326 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCG
* * * * * * * * * *
15858245 CATCCCGTCTCTTTTGTCGGCATAGTGCCCGCCCGCCTGCCCGCCCGCTCATTTCGTCAGTTGGC
391 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGACCGCCTGTCCGCTCGCTCGTTTCATC-GATGGC
* ** * ** *
15858310 TTAGGCGTACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACTGAGGGTTATGGTAGCAG-GAT
455 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGG-T-T-GCAGCAGCGAT
* * * * * * *
15858374 CTGCAGTAC-GCAGAGGAGGACTCG--G-CTGATCCTC-GGCTTACGCATCCCGCCCCTCTGGCC
517 -GGGAG-CCGGCAGAGGGGGACTCGCAGACCGATCC-CAGGCTTGCGCATCCCGCCCCTCTAGCC
* * ** * *
15858434 GACTGAGTGCCCATACGCTCGTTTCGTGGGTTGACTTTGGCATACAGAGTTCATTCCTAGTCCAA
579 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-C----CC-A
* * * * *
15858499 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGGTAGTACATGTTGGG
638 G--T-C-----T-A-T---A--C----ATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
15858564 CTCCGGCATGTGCTGGTGCCCCATTTTTCTTCAC-CGGGGCACCATCGTCGGAGCATCGCCGGAG
684 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-CTCGGGGCACCATCGTCAGAGCATCGCCGGAG
* * * * *
15858628 AACCTGACTGGCGGCATTGGGGTTCAGGCGATCGGGGGGGCCGGAGGGGGTGTGCGCACATGATG
748 AACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGG-C-G-GGGGGTGTGCGCACATGATG
* *
15858693 TGCGATGGGGGCTGGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
810 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
15858758 AC
875 AC
*
15858760 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGGCT-GTAGCCATTAAAGTGTCTGAAA
1 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT-GCTAGTAGCCATTAAAGTGTCTAAAA
* *
15858824 TGGGGACTCTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
65 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTTTTTT
* * * * * **
15858889 GTGCATGCCAACAAAAATACAAGGATCACGTCTGCCATGTTTGAGGCCAAAACTCTTTTTGAAAA
130 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * * *
15858954 AATTTTAAAAAATCCCTAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCATCT
195 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
15859019 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
260 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
15859084 ATTGCCATGCAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATTGATCCACGGCTTGC
325 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGC
* * * * * * * * *
15859149 ACATCTCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCG-CCTGCCCCCTCGTTTCGTCGGTTG
390 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGACCGCCTGTCC-GCTCGCTCGTTTCATC-GATG
* * * * *
15859213 GCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACAGCAGCAAGA
453 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGC--GA
* *** * * * *
15859278 TCGGTAGCATACAG-GGGGGAC-C-C-GACCGATCCCCA-TCTTACACATCCCGCCCCTCTGGCC
516 T-GGGAGCCGGCAGAGGGGGACTCGCAGACCGAT-CCCAGGCTTGCGCATCCCGCCCCTCTAGCC
* *
15859338 GGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTAATTCCCAGTCTA-
579 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAT
* * * * * * * *
15859402 AGATCGGACCGGACCGAGGGTTGTGGTAGCACATACTGGGCTCGAGCATGTCCTGGTGCCTCATT
644 ACATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
** * *
15859467 TTTCTTTGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACAGCATTGGGGTTCC
709 TTTCTTCCTCGGGGCACCATCGTCAGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCC
* * * *
15859532 GGCGATCGGGGGGGCTGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTATTTGGCCCTT
774 GACGATCGAGGGGGC-G-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
*
15859597 ATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCAC
837 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
15859637 AGCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
1 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTAAAAT
* *
15859702 GGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAATTTTTAGCTGAATTTTTTTG
66 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTTTTTTG
* * *
15859767 TGCATGCCAAAAAAAAATACAAGGATCACGTCTACCAAGGTTGGGGCCAAAAATCCTACCGAAAA
131 TGCATGCC-AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * ** * *
15859832 AATTTTAAAAAATCTCGAACCGTAATAAGTTTTGTAAATCGTGAAAAATAGAAAATGAGTCATCT
195 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * *
15859897 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTGCAAGCCGTAAAAATGGC
260 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
15859962 ATTGGCATGCAGAAATATGACGATGTGCCTAAACCCACCTACTACCCTATCGATCCATGACTTAC
325 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGC
* * ** * *
15860027 GCATCCCATCTCTCTGGCCAGCGTAGTGCCTAACCG-C---CCGCCCGCTCGTTTCATCAACTGG
390 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGACCGCCTGTCCGCTCGCTCGTTTCATCGA-TGG
* *
15860088 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCAAGGGTTGCAGTAGCAAGAT
454 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGC--GA-
* * * * *
15860153 TGGCAGCAGGCAGAGGGGGAC-C-CA-ACTGATCCCCGGCTTGCGCATCCCGCCCTTCTAGCCGG
516 TGGGAGCCGGCAGAGGGGGACTCGCAGACCGATCCCAGGCTTGCGCATCCCGCCCCTCTAGCCGG
* * *
15860215 CTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGTCATAAGGAGTTCATTCCCAGTCTAAGC
581 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C
*
15860280 ATACGGAGTTCATTCCCAGTCTAAGATCGAACAGGACCGAGGGTTGCGGCAGCACATGTTGGGCT
641 -T----A--T-A----CA-TC--AGA-C---C-GGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * * * * *
15860345 TGGGCATGTGCTGGAGCCGTATTTTTCTTCTTCGGGGCACCATCGTCGGAGCATCACCGGAGAAC
686 CGGGCATGTGCTGGTGCCGCATTTTTCTTCCTCGGGGCACCATCGTCAGAGCATCGCCGGAGAAC
* * * ** *
15860410 CTGACCGATGGTATTGGGGTTTCGGTGATCGGGGGGGCCGAGGGGGTGTGCG-ACATGATGTGCG
751 CTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGG-CG-GGGGGTGTGCGCACATGATGTGCG
** * * *
15860474 ATGGGTGCTGGTACTTGGCCCTTATATTTACCTCCTATCCCTCATTAAACCTTGAGAACTCAC
814 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
15860537 ACCCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAATTGTCTAAAAT
1 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTAAAAT
* * *
15860602 GGGGACACTTTTTTCAAATGGTCACAAAAACTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTG
66 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTTTTTTG
* *
15860667 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGGCAAAACTCTTTCC-AAAAA
131 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
** * *
15860731 ATTTTAAAAAATCCCGAACCACAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
196 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
15860796 ACCATGAAACTTCACGTGAAGGCTTAAGGGACCA-TGTTATGAATTTACAAGCCATAAAAAATGG
261 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG-TATGAATTTACAAGCCAT-AAAAATGG
** * * * *
15860860 CATTGGCACACAAAAATATGAAGCTGTGCCTAAACCCACCTACCATCCTATCGATCCACGGCTTG
324 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTG
* * *
15860925 CGCATCCCGCCTCTATGGCCGGCGTAGTGCCCGGCCGCCTGT----T---T-GTTTCATCGATCG
389 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGACCGCCTGTCCGCTCGCTCGTTTCATCGAT-G
* * * * * *
15860982 GCTTAGGTATACGGAGTTCATTCCCAATCTAAAATCAAACCAGACCGAGGGTTATGGTAGCAG-G
453 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGG-T-T-GCAGCAGCG
** * * * **
15861046 ATCGATAGCAC-GCAAAGGGGGACTCG--G-CCGATCCCCGGCTTACGCATCCCGCCTGTCT-GC
515 AT-GGGAGC-CGGCAGAGGGGGACTCGCAGACCGATCCCAGGCTTGCGCATCCCGCCCCTCTAGC
* *
15861106 CAGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTA
578 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CC---C--
* * * **
15861171 AGCATACGGAGTTCATTCCCAGTCAGAGATCGGATCAGACCGAGGGTTACGATAGCACATGCTGG
637 AG--T-C-----T-A-T-ACA-TC--AGA-C----CGGACCGAGGGTTGCGGCAGCACATGCTGG
*
15861236 GCTC-GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG-C----CA------GAG
683 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCTCGGGGCACCATCGTCAGAGCATCGCCGGAG
* * * ** *
15861289 AACCTGACAGGCGGCAATGGGGTT-TTAGCGATCG-GGGGACCGGGGGGTGTGCGCACATGATGT
748 AACCTGACCGACGGCATTGGGGTTCCGA-CGATCGAGGGG-GCGGGGGGTGTGCGCACATGATGT
* * * *
15861352 GCAATGGGTGCTAGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATTAAACCTCGAGAACTCA
811 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
15861417 C
876 C
* *
15861418 A-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAG
1 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTAAAAT
* *
15861482 GGGGACACTTTTTTCAAATAGTCACAAAATCTTGTACACTTTGAATTTTTAGCTGAATTTTGTTT
66 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTTT-TTT
* *
15861547 GTGCATGCCAAAAAAAATACAAGGATCTCGTCTACCAATTTTGGGGCCAAAACTCCTTCCGAAAA
130 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * *
15861612 AATTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
195 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
15861677 TGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
260 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
15861742 ATTGGCA-GATAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTG
325 ATTGGCATG-CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTG
* * * * * * * * *
15861806 CGCTTCCCGTCTTTCTGGTCGACGTAGTGCCCGCCCACCTGCCCGC-CTGCTCGTTTCGTCGGTT
389 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGACCGCCTGTCCGCTC-GCTCGTTTCATC-GAT
* * * *
15861870 GGCTTAGGTATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGAGCAAGGGTTGCAGCAGCAGG
452 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGC--G
* * * * * * *
15861935 ATCGGCATCAC-GTAGAGGGGGAC-C-C-GATCGATTCTC-GACTTGCGCATCCCGCCCCTCTGG
515 AT-GGGAGC-CGGCAGAGGGGGACTCGCAGACCGA-TCCCAGGCTTGCGCATCCCGCCCCTCTAG
* * *
15861995 CCAGTTGAGCGCCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
577 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * * *
15862060 A-AGATCGGACCGGACCGAGGGTTGCGGCAGTACATGCTAGGCTCGGGCATGTGCTGGTGCTGTA
642 ATACATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
* * *
15862124 TTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTT
707 TTTTTCTTCCTCGGGGCACCATCGTCAGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTT
* * * * *
15862189 TCGACGATCAATGGGGCCGAGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGTCC
772 CCGACGATCGA-GGGG--GCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
*
15862254 CTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
834 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * **
15862297 ACCCCCTGAAAGGGCATTTGAGAATTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCCGAAAT
1 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTAAAAT
* * *
15862362 GGGGACACTTTTTTCGAATGATCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTTTTTTT
66 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTTTTTTG
* * * * *
15862427 TGCATGCCAACAATAATACAAGGATCACGTCTA-GAAGGTTTGGGGCCAAAAATCCTTCTGAAAA
131 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA-GTTTGGGGCCAAAACTCCTTCCGAAAA
** * *
15862491 AATTTTAAAAAATCTGGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAATGAGTCATCT
195 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
15862556 TGCCATGAAACTTCA-GTGCAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
260 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
15862620 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA-CCTATCGATCCACGGCTTGC
325 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGC
* * * * * *
15862684 GCATCCCGTCTCTCTGGCCGGTGTAGTACCCGTCCGCGTGTCCGCTCGCTCATTTCATTGGATGG
390 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGACCGCCTGTCCGCTCGCTCGTTTCA-TCGATGG
** ** **
15862749 CTTAGGCATA-GGAGTTCATTCCCAGTCTAAGATTGGACTGGACCGTGGGTTGTGGCAGCACGCA
454 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGG-T-T-GCAGCA-GC-
* * *
15862813 GA-GGGGGACCGGACTGAGGGTTACGGTAGCAAGATCGGCAGACCGATCCCAGGCTTGCACATCC
514 GATGGGAG-CCGG-CAGAGGG----GG-A-C----TC-GCAGACCGATCCCAGGCTTGCGCATCC
* * * *
15862877 CGCCCCTCTAGCCGGCTAAGCGCCCGCACACTCATTTTGTGGGTTGACTTAGGCATACGGAGTTC
566 CGCCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* **
15862942 ATTCCCAGTCTATA-ATCAGACCGGATCGAGGGTTGCGGCAGCACATGCTGGGCTCAAGCATGTG
631 ATTCCCAGTCTATACATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* * * ** * * *
15863006 TTGGTGCCACATTTTTTTTCACT-GGGGCACCATCG-CAGAGCATCGCCAAAGAACCTTATCGGC
696 CTGGTGCCGCATTTTTCTTC-CTCGGGGCACCATCGTCAGAGCATCGCCGGAGAACCTGACCGAC
*
15863069 GACATTGGGGTTCCGACGATC-AGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
760 GGCATTGGGGTTCCGACGATCGAGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* * * * *
15863133 TACTTGGCCTTTATATTGGCCCCCTATCCCACATCAAACATCAAAAACTCAC
825 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
15863185 ACCCCCTTAAAGAGCAATTGAGATTTTACAGGTTTGTTGCTAGTAGCCATTAAAGTGTCTTAAAT
1 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTAAAAT
* * * *
15863250 GGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATGTTTTTG
66 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTTTTTTG
* ** * * * * * *
15863315 GGCATGCCAGCAAAAATAAAAAGATCATGTCTACCAAGTTTGGGACTAAAACTCCTTCCAAAAAA
131 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * *
15863380 ATTTTAAAAGATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAGTAGAAAACGAGTCGTCTT
196 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
15863445 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCAATG-ATTGAATTTACAAGCCATAAAAATGGC
261 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA-TGAATTTACAAGCCATAAAAATGGC
* *
15863509 ATTGGCATGCAAAAATATGCAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGC
325 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGC
* ** * * * *
15863574 ACATCCCGTCTCTCTATCCAGCGTAGCGCCC-A-C-CC-G-CTCGCCCG-TACGTTTCGTCGATT
390 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGACCGCCTGTC-CGCTCGCT-CGTTTCATCGA-T
* * * * *
15863633 GGCTTAGGCATGCAGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTG-TG--GC-A-
452 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGCGAT
* * * ** * * * *
15863693 -GCA--C-GCAGAGGGGGA-TC-C-GATCGATCTCTAGG-TTATGCATCCTGCTCCTATGGCCGG
517 GGGAGCCGGCAGAGGGGGACTCGCAGACCGATC-CCAGGCTTGCGCATCCCGCCCCTCTAGCCGG
* *
15863750 TTGAGCGCCCGCACGCTCG-TT-GTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAT
581 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAT
15863811 CGATCCATGG
Statistics
Matches: 5911, Mismatches: 712, Indels: 451
0.84 0.10 0.06
Matches are distributed among these distances:
856 39 0.01
857 2 0.00
858 40 0.01
859 5 0.00
861 2 0.00
864 28 0.00
865 41 0.01
866 1 0.00
867 1 0.00
868 3 0.00
869 2 0.00
870 2 0.00
871 7 0.00
872 90 0.02
873 122 0.02
874 540 0.09
875 186 0.03
876 66 0.01
877 300 0.05
878 474 0.08
879 229 0.04
880 248 0.04
881 234 0.04
882 144 0.02
883 7 0.00
884 5 0.00
885 8 0.00
886 31 0.01
887 35 0.01
888 328 0.06
889 186 0.03
890 109 0.02
891 2 0.00
892 46 0.01
893 199 0.03
894 97 0.02
895 107 0.02
896 282 0.05
897 60 0.01
898 181 0.03
899 147 0.02
900 253 0.04
901 301 0.05
902 85 0.01
903 5 0.00
904 328 0.06
905 303 0.05
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (876 bp):
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTAAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTTTTTTG
TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCG
CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGACCGCCTGTCCGCTCGCTCGTTTCATCGATGGCT
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGCGATGGGA
GCCGGCAGAGGGGGACTCGCAGACCGATCCCAGGCTTGCGCATCCCGCCCCTCTAGCCGGCTGAG
CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTATACATCAG
ACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
CTCGGGGCACCATCGTCAGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC
GAGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
CCCTATCCCTCATCAAACCTCGAGAACTCAC
Found at i:15864954 original size:26 final size:26
Alignment explanation
Indices: 15864925--15864977 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15864915 GTTGACTTAG
* * *
15864925 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
15864951 GCATATGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
15864977 G
1 G
15864978 ATCGGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:15865888 original size:861 final size:864
Alignment explanation
Indices: 15864309--15867334 Score: 3544
Period size: 906 Copynumber: 3.4 Consensus size: 864
15864299 CCCTATCCCA
* * * * *
15864309 CATCAAACATCGAGAACTCCCACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
1 CATCAAACCTTGAGAACTCACACCACCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* *
15864374 AGCCATTAAAGTGTCTTAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
66 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * *
15864439 GTTTTTAGCTGAACTTTTTTGTGCATGCCAACAAAAATTCAAGGATCACGTCTACCAACTTTGGG
131 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* *
15864504 GCCAAAACTCCTTCC-AAAAAATTTTTAAAAAATCCTGAACTGTAAAAAGTTTCAAAAATCATGA
196 GCCAAAACTCCTTCCGAAAAAA-TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGA
* * *
15864568 AAAATAGAAAATGAGTCGTCTCGCCATGAAACTTCACGTGAAGGCTTAAAAGACCATTGTATGAA
260 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAA
* * *
15864633 TTTACAAGCCAT-GAAA----ATT--CA--C------GTGAAGATGTGCCTAAACCAACCTACCA
325 TTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCA
* * ** * *
15864683 CCCTATCAATCCACGGCTTGCGCATCCCGTCTCTCTGGAC---G-A-CG-TAG-TGCCTGCCTGC
390 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGCGCCCGCCGCCTGCCCGC
** * * *
15864741 TTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTTCCAGTAC-AAGATTGGACCGGAC
455 CCGCTCGTTTCGTCGGTTGGCTT-GGCATACGGAGTTCATTCCCAGT-CTAAGATTAGACCAGAC
* * * * * * **
15864805 CGAGTGTTGCGGTAGCAAGATTGGCAAG-ACACAGAGGGGGACCCGACCGATCCCC-AGCTTATG
518 CGAGGGTTGTGGTAGCAGGATCGGC-AGCACGCAGAGGGGGACCCGACTGATCCCCGA-CTTGCG
* * * * *
15864868 CATCCTGCCCCTCTGGCCGACTGAGCGCCCGCATGTTC-ATTTCGGGGGTTGACTTAGGCATACG
581 CATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGA-TTCGTGGGTTGACTTAGTCATACG
* * * * *
15864932 GAGTTCATTCCTAGTCTAAGCATATGAAGTTCATTCCCAATCTAAGATCGGACTGGACCGAGGGA
645 GAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GACCGAGGGT
* *
15864997 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCATCGGGGCACCATC
709 TACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTC-CCGGGGCACCATC
* * * * **
15865062 GTCGGAGCATCGCCATTGAACCTGACCGGCGGTA-TGGGGTTCCGAAGATCGGGGGGCCAGGGGG
773 GTCGAAGCATCGCCA--GAACCTGACCGACGGCATTAGGGTTCCGGTGATCGGGGGGCCAGGGGG
15865126 GTGTGCGCAC-AT-GA-TG-T-G-CGA-T
836 GTGTGCGCACAATGGAGTGTTGGCCGACT
15865148 CATCAAACCTTGAGAACTCACACC-CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
1 CATCAAACCTTGAGAACTCACACCACCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* *
15865212 AGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTGGA
66 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* *
15865277 GTGTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGG
131 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* *
15865342 GCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCCTGAA
196 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAA
* * *
15865407 AAATAGAAAACAAAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
261 AAATAGAAAAC-GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAA
* *
15865472 TTTACAAGCCATAAAAATGGCATTGGAATGCAAAAATATGAAGATGTGCCTAAACCCACGTACCA
325 TTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCA
*
15865537 CCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGGTGTAGCGCCCGCCCGCCTGCCCG
390 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGCGCCCG-CCGCCTGCCCG
* * *
15865602 CCCGCTCGTTTCGTAGGTTGGCTTGGGATGCGGAGTTCATTCCCAGTCTAAGATTAGACCAGACC
454 CCCGCTCGTTTCGTCGGTTGGCTTGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACC
* **
15865667 AAGGGTTGTGACAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACTGATCCCCGACTTGCGCAT
519 GAGGGTTGTGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACTGATCCCCGACTTGCGCAT
* * *
15865732 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGATTCGTGAGTTGACTTAGTCAAACGGAGT
584 CCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGATTCGTGGGTTGACTTAGTCATACGGAGT
*
15865797 TCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCTGACCGAGGGTTACA
649 TCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CTGACCGAGGGTTACG
* * *
15865862 ACAGCACATACTGGGCTCGAGCATGTGCTGGTGCTGCATTTTTCTTCGCCGGGGCACCATCGTCG
713 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTC-CCGGGGCACCATCGTCG
* * * *
15865927 CAGCATCGTCGAGAACCTGACCGACGGCATTTGGGTTTCGGTGATCGGGGGGCC-GGGGGGTGTG
777 AAGCATCG-CCAGAACCTGACCGACGGCATTAGGGTTCCGGTGATCGGGGGGCCAGGGGGGTGTG
15865991 CGCACATGATATGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
841 CGCAC---A-ATG-GA-----G-T-G---TTGG-CC--------G------A---CT
*
15866048 CATCAAACCTTGAGAACTCACACCACCTAAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
1 CATCAAACCTTGAGAACTCACACCACCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
*
15866113 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGA
66 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * * * * *
15866178 GTTTGTAGCTGAATTTTTTTTTGCAAGCCAATAAAAATACAAGGATCACATCTACGAAGTTTGGG
131 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * *
15866243 GCCAAAACTCTTTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGGTTT-GAAAATCATGA
196 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAA-GTTTCAAAAATCATGA
* *
15866307 AAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATCGTATGAA
260 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAA
* * *
15866372 TTTACAAGCCATATAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCA
325 TTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCA
* * *
15866437 CCCTATTGATCCACAGCTTGCGCATCCCGTCTCTCTGGCTGACGTAGT-GCCCGCCCGTCCGCCT
390 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG--GT-GTAG--CGCCCG-CCGCCT
* * *
15866501 GTCCGCCCGCTCGTTTTGTCGGTTGGCTTTGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
449 GCCCGCCCGCTCGTTTCGTCGGTTGGC-TTGGCATACGGAGTTCATTCCCAGTCTAAGATTAGAC
* * *
15866566 CAGACTGAGGGTTGTGGTAGCAGGATCGACAGCACGGAGAGGGCGG-CCCGA-TCGATCCCCGAC
513 CAGACCGAGGGTTGTGGTAGCAGGATCGGCAGCACGCAGAGGG-GGACCCGACT-GATCCCCGAC
* * * * * *
15866629 TTGCGCATCTCGCCCCTCTGGCCGTCTGAGCGCCCGTAC-CTTGTTTCATGGGTTGACTTAGTCA
576 TTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGATTCGTGGGTTGACTTAGTCA
* * * ** * ** *
15866693 TACAGAGTTCGTTCCCAGTCTAAGCATACGGAGTTCATTCGTAGTCTAAGATCAAATCAAACTGA
641 TACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CTGACCGA
* * *
15866758 GGGTTACGGCAACACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCAGGGGCAC
705 GGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTC-CCGGGGCAC
* * * * * *
15866823 CATCGCCTAAGCATCACCAGAGAAACTGACCGACGGCATTAGGTTTCTGGTGATCGGGGGGCCAG
769 CATCGTCGAAGCATCGCC--AGAACCTGACCGACGGCATTAGGGTTCCGGTGATCGGGGGGCCAG
*
15866888 GGGGGTGTGCGTACATGATGTGCGATAGGTGCTGGTACTTGGCCCTTGTATTGGCCCCCTATCTC
832 GGGGGTGTGCG--C---A----C-A-A-----TGG-A----G----TG--TTGG---CCGA---C
15866953 T
864 T
* * *
15866954 CATCAAACCTTGAGAACTCACACCACTTTAAATAGCAATTGAGATTTTACAGGTTTGCTGCCAGT
1 CATCAAACCTTGAGAACTCACACCACCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
*
15867019 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTGAAATGGTCACAAAATCTTGTACACTTCGA
66 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * *
15867084 TTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCGCGTCTACCAAGTTTGGG
131 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* **
15867149 GCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCAAAAAAAGTTTCAAAAATCATGAA
196 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAA
* * *
15867214 GAATAGAAAACGAGTCGTCTTGCCATGAAACTTCTCGTGAAGGCTTAAGGGACCATTGTATGAAT
261 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAAT
* * *
15867279 TTACAAGCCATAAAAATAGTATTGGCATGCAAAAATATGAAGATTTGCCTAAACCC
326 TTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCC
15867335 GGCTTGCGCA
Statistics
Matches: 1880, Mismatches: 201, Indels: 145
0.84 0.09 0.07
Matches are distributed among these distances:
838 225 0.12
839 87 0.05
840 3 0.00
844 3 0.00
846 1 0.00
848 1 0.00
854 62 0.03
857 1 0.00
858 1 0.00
859 2 0.00
860 34 0.02
861 280 0.15
862 35 0.02
865 2 0.00
867 2 0.00
874 1 0.00
875 1 0.00
879 1 0.00
880 1 0.00
882 1 0.00
890 1 0.00
896 1 0.00
900 171 0.09
901 222 0.12
902 7 0.00
903 3 0.00
904 182 0.10
905 164 0.09
906 364 0.19
908 1 0.00
911 1 0.00
913 4 0.00
915 1 0.00
917 2 0.00
918 7 0.00
919 1 0.00
920 4 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (864 bp):
CATCAAACCTTGAGAACTCACACCACCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAA
AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAAT
TTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCAC
CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGCGCCCGCCGCCTGCCCGCC
CGCTCGTTTCGTCGGTTGGCTTGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGA
GGGTTGTGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACTGATCCCCGACTTGCGCATCC
CGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGATTCGTGGGTTGACTTAGTCATACGGAGTTC
ATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGACCGAGGGTTACGGCA
GCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCCCGGGGCACCATCGTCGAAGC
ATCGCCAGAACCTGACCGACGGCATTAGGGTTCCGGTGATCGGGGGGCCAGGGGGGTGTGCGCAC
AATGGAGTGTTGGCCGACT
Found at i:15866727 original size:26 final size:26
Alignment explanation
Indices: 15866691--15866742 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
15866681 TTGACTTAGT
*
15866691 CATACAGAGTTCGTTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
* **
15866717 CATACGGAGTTCATTCGTAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
15866743 ATCAAATCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAG
Found at i:15867436 original size:26 final size:26
Alignment explanation
Indices: 15867400--15867452 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15867390 GTTGACTTAG
15867400 GCATACGGAGTTCA-TTCCTAGTCTAA
1 GCATACGGAGTTCATTTCC-AGTCTAA
15867426 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTTCCAGTCTAA
15867452 G
1 G
15867453 ATCAAATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTTCCAGTCTAA
Found at i:15868048 original size:701 final size:695
Alignment explanation
Indices: 15866632--15868731 Score: 3243
Period size: 699 Copynumber: 3.0 Consensus size: 695
15866622 CCCCGACTTG
* * * * * * *
15866632 CGCATCTCGCCCCTCTGGCCGTCTGAGCGCCCGTACCTTGTTTCATGGGTTGACTTAGTCATACA
1 CGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACCTCGTTTCGTGGGTTGACTTAGGCATACG
* * * *
15866697 GAGTTCGTTCCCAGTCTAAGCATACGGAGTTCATTCGTAGTCTAAGATCAAATCAAACTGAGGGT
66 GAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTC-CAGTCTAAGATCAAATCAGACTGAGGGT
* * *
15866762 TACGGCAACACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG-CAGGGGCACCAT
130 TACGACAACACATGCTGGGCTTGGGCATGTGCTGGTGACGCATTTTTCTTCGTC-GGGGCACCAT
* * * * * **
15866826 CGCCTAAGCATCACCAGAGAAACTGACCGACGGCATTAGGTTTCTGGTGATCGGGGGGCCAGGGG
194 CGCC---G-------A-AGAACCTGATCGACGGCATTGGGGTTCCGACGATCGGGGGGCC-GGGG
* * * * *
15866891 GGTGTGCGTACATGATGTGCGATAGGTGCTGGTACTTGGCCCTTGTATTGGCCCCCTATCTCTCA
247 GGTGTGCGCACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
** * * * * *
15866956 TCAAACCTTGAGAACTCACACCACTTTAAATAGCAATTGAGATTTTACAGGTTTGCTGCCAGTAG
312 TCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCATTAG
* * * *
15867021 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTGAAATGGTCACAAAATCTTGTACACTTCGATT
377 CCATTAAAGTGTCTGAAATGGGGACACTTTTCTCAAATGGTCACAAAATCTTGTACAC-TCAAGT
* * *
15867086 TTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCGCGTCTACCAAGTTTGGGGC
441 TTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* ** *
15867151 CAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCAAAAAAAGTTTCAAAAATCATGAAGA
506 CAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAA
* *
15867216 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCTCGTGAAGGCTTAAGGGACCATTGTATGAATTT
571 AAAGAAAACAAGTCGTCTTGCCATGAAACTTCTCGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * * *
15867281 ACAAGCCATAAAAATAGTATTGGCATGCAAAAATATGAAGATTTGCCTAAACCCGGCTTG
636 ACAAGCCATAAAAATGGTATTGGCATGCAGAAATATGAAGATTTGCCTAAACCCGGCATA
15867341 CGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
1 CGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCAC-CTCGTTTCGTGGGTTGACTTAGGCATAC
*
15867406 GGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTTCCAGTCTAAGATCAAATCGGACTGAGGG
65 GGAGTTCATTCCTAGTCTAAGCATACGGAGTTCA-TTCCAGTCTAAGATCAAATCAGACTGAGGG
* *
15867471 TTACGACAACACATGCTGGGCTTGGGTATGTGCTGGTGATGCATTTTTCTTCGTCGGGGCACCAT
129 TTACGACAACACATGCTGGGCTTGGGCATGTGCTGGTGACGCATTTTTCTTCGTCGGGGCACCAT
*
15867536 CGCCGAAGAACCTGATCGACGGTATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCAC
194 CGCCGAAGAACCTGATCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCAC
15867601 ATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAA
258 ATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAA
15867666 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCATTAGCCATTAAAGTG
323 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCATTAGCCATTAAAGTG
15867731 TCTGAAATGGGGACACTTTTCTCAAATGGTCACAAAATCTTGTACACTCCAAGTTTTTAGCTGAA
388 TCTGAAATGGGGACACTTTTCTCAAATGGTCACAAAATCTTGTACACT-CAAGTTTTTAGCTGAA
15867796 TTTTTTTGTGCATGCCAAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
452 TTTTTTTGTGCATGCC--AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
* *
15867861 TTTCGAAAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAAAAGAAAAC
515 TTTCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAAAAGAAAAC
15867926 AAGTCGTCTTGCCATGAAACTTCTCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
580 AAGTCGTCTTGCCATGAAACTTCTCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
15867991 AAAAATGGTATTGGCATGCAGAAATATGAAGATTTGCCTAAACCCGGCATA
645 AAAAATGGTATTGGCATGCAGAAATATGAAGATTTGCCTAAACCCGGCATA
* * ** *
15868042 CGCATCCGGCCCTTCTGGCCGGTTGAGCGCCCGCGCACTCGTTTCGTGGGTTGACTTAGGCATAC
1 CGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCAC-CTCGTTTCGTGGGTTGACTTAGGCATAC
* * *
15868107 GGAGTTAATTCCTAGTCTAAGCATACGGAGTTCATTCCAGTCTAAGATCAAACCAGACCGAGGGT
65 GGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCAGTCTAAGATCAAATCAGACTGAGGGT
* *
15868172 TACGACAGCACATGCTGGGCTTGGGCATGTGCTGGTGACACATTTTTCTTCGTCGGGGCACCATC
130 TACGACAACACATGCTGGGCTTGGGCATGTGCTGGTGACGCATTTTTCTTCGTCGGGGCACCATC
* *
15868237 GCCGGAGAACCTGATCTG-CGGCATTGGGGTTCCGACAATCGGGGGGCCGGGGGGTGTGCGCACA
195 GCCGAAGAACCTGATC-GACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACA
15868301 TGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAG
259 TGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAG
15868366 AACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCATTAGCCATTAAAGTGT
324 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCATTAGCCATTAAAGTGT
15868430 CTGAAATGGGGACACTTTTCTCAAATGGTCACAAAATCTTGTACACTCAGAGTTTTTAGCTGAAT
389 CTGAAATGGGGACACTTTTCTCAAATGGTCACAAAATCTTGTACACTCA-AGTTTTTAGCTGAAT
* *
15868495 TTTTTTGTGCATGCCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCGAAACTCCTTT
453 TTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTT
15868560 CGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAAAAGAAAACAAG
518 CGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAAAAGAAAACAAG
* * * * *
15868625 TCTTCTTGCCATGAAACTTCACGTGAATGCTTAAAGGACCATTCTATGAATTTACAAGCCATAAA
583 TCGTCTTGCCATGAAACTTCTCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* *** *
15868690 AATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCC
648 AATGGTATTGGCATGCAGAAATATGAAGATTTGCCTAAACCC
15868732 ACCTACCACC
Statistics
Matches: 1295, Mismatches: 87, Indels: 31
0.92 0.06 0.02
Matches are distributed among these distances:
696 208 0.16
697 2 0.00
698 134 0.10
699 331 0.26
700 133 0.10
701 307 0.24
707 1 0.00
709 33 0.03
710 142 0.11
711 4 0.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.27
Consensus pattern (695 bp):
CGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACCTCGTTTCGTGGGTTGACTTAGGCATACG
GAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCAGTCTAAGATCAAATCAGACTGAGGGTT
ACGACAACACATGCTGGGCTTGGGCATGTGCTGGTGACGCATTTTTCTTCGTCGGGGCACCATCG
CCGAAGAACCTGATCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATG
ATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAA
CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCATTAGCCATTAAAGTGTCT
GAAATGGGGACACTTTTCTCAAATGGTCACAAAATCTTGTACACTCAAGTTTTTAGCTGAATTTT
TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGA
AAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAAAAGAAAACAAGTCG
TCTTGCCATGAAACTTCTCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
GGTATTGGCATGCAGAAATATGAAGATTTGCCTAAACCCGGCATA
Found at i:15868137 original size:26 final size:25
Alignment explanation
Indices: 15868101--15868152 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
15868091 GTTGACTTAG
15868101 GCATACGGAGTTAATTCCTAGTCTAA
1 GCATACGGAGTTAATTCC-AGTCTAA
*
15868127 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTAATTCCAGTCTAA
15868152 G
1 G
15868153 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTAATTCCAGTCTAA
Found at i:15870481 original size:883 final size:881
Alignment explanation
Indices: 15868055--15872536 Score: 5592
Period size: 884 Copynumber: 5.1 Consensus size: 881
15868045 ATCCGGCCCT
* * * *
15868055 TCTGGCCGGTTGAGCGCCCGCGCACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTAATTCCT
1 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-
* ** * *
15868120 AGTCTAAGCATACGGAGTTCATTCCAGTCTAAGATCAAACCAGACCGAGGGTTAC-GACAGCACA
65 AGTCCAAGCATAC-GAGTTCATTCCAGTCTAAGATCGGACCGGACCGAGGGTTGCTGACAGCACA
* * * *
15868184 TGCTGGGCTTGGGCATGTGCTGGTGACACATTTTTCTTCGTCGGGGCACCATCGCCGGAGAACCT
129 TGCTGGGCTCGGGCATGTGCTGGTGTCACATTTTTCTTCATCGGGGCACCATCGTCGGAGAACCT
* * **
15868249 GATCTGCGGCATTGGGGTTCCGACAATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
194 GACCGGCGGCATTGGGGTTCCGATGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
*
15868314 GTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA-CCCC
259 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCC
*
15868378 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCATTAGCCATTAAAGTGTCTGAAATGGGGAC
324 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
*
15868443 ACTTTTCTCAAATGGTCACAAAATCTTGTACACTCAGAGTTTTTAGCTGAATTTTTTTGTGCATG
389 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTC-GAGTTTTTAGCTGAA-TTTTTTGTGCATG
* * *
15868508 CCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCGAAACTCCTTTCGAAAAAATTTT
452 -CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAAATCC-TTCGAAAAAATTTT
* * * *
15868572 AAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAAAAGAAAACAAGTCTTCTTGCCAT
515 AAAAAATCCTGAACCGTAAAAAGTTTC-AAAATCATGAAAAATAGAAAACGAGTCATCTTGCCAT
* * *
15868637 GAAACTTCACGTGAATGCTTAAAGGACCATTCTATGAATTTACAAGCCATAAAAATGGCATTGGC
579 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
*** *
15868702 ACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATAGATCCACGGCTTGCGCATCC
644 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * ** *
15868767 TGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATA
709 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * *
15868832 CGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACA
774 CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGAGGCAGCAGGATCGACAGCACG
* * * *
15868897 CAGAGGGG--GACCCGACCGATCCC-AGCTTGCCCATCCCACCGC
839 CAGAGGGGACGA-CCGACCGA-CCCTGGCTTGCGCATCTCACCCC
* * * * *
15868939 TCTGACCGGCTAAGCGCTCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCT
1 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-
* *
15869004 AGTCCAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG-TGATAGCAC
65 AGTCCAAGCATACG-AGTTCATT-CCAGTCTAAGATCGGACCGGACCGAGGGTTGCTGACAGCAC
* *
15869068 ATGCTGGGCTTGGGCATGTGCTGGTGTCACATTTTTCTTCACCGGGGCACCATCTCTGGAGCATC
128 ATGCTGGGCTCGGGCATGTGCTGGTGTCACATTTTTCTTCATCGGGGCACCA--TC----G--T-
* * ***
15869133 GCAGGAGAACCTGATCGGTGGCATTGGGGTTCCGGCAATCGGGGGGCCGGGGGGTGTGCGCACAT
184 -C-GGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGCCGGGGGGTGTGCGCACAT
* * ** * *
15869198 GATGTGCGATGGGTGTTGGTACTAGTTCTTTATATTAGCCCCCTATCCCTCATCAAACCTCAAGA
247 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGA
* * * *
15869263 ACTCAAAGCCCCTTCAAGAGCATTTGAGATTTTACAGGTTTGCTGCAAGTAGCCATTAAAGTGTC
312 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * * *
15869328 TAAAATGGGGAAACTTTTTTCAAATGGTCACAAAATCCTATACACTCGAGTTTTTAGCTGAATCT
377 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTCGAGTTTTTAGCTGAAT-T
* **
15869393 TTTTGTGCATGCCAACAGAAATACAAGGATCACGTCTACCAAGTTTATGACCAAAAATCCTTTCG
441 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAAATCC-TTCG
*
15869458 AAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAATCATGAAAAATAGAAAACGAGTCG
505 AAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAATCATGAAAAATAGAAAACGAGTCA
* * *
15869523 TCCTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAAT
570 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
15869588 GGCATTGGCATGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCT
635 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * *
15869653 TGCGCATCCCGTCTCT-TGACCGGCGTAGTGCCCGCCCACCCGTCCGCTCGTTTCGTCGGTTGGT
700 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGC
** *
15869717 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGTGGCAGCAGGATC
765 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGAGGCAGCAGGATC
* * * * *
15869782 GGCAGCACGTAGAGGGGACGACCAACCGACCCTGGCTTGTGCATCTCGCCCC
830 GACAGCACGCAGAGGGGACGACCGACCGACCCTGGCTTGCGCATCTCACCCC
*
15869834 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTGATTGCC
1 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CC
* * * *
15869899 AGTCCAAGCATACAGAGTTCA-TCCTAGTCTAAGATTGGATCGGACCGAGGGTTGCGGCCA-CAC
65 AGTCCAAGCATAC-GAGTTCATTCC-AGTCTAAGATCGGACCGGACCGAGGGTTGCTGACAGCAC
* *
15869962 ATACTGGGCTCGGGCATGTGCTGGTGTCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACC
128 ATGCTGGGCTCGGGCATGTGCTGGTGTCACATTTTTCTTCATCGGGGCACCATCGTCGGAGAACC
* * *
15870027 TGACCGGCAGCATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGTGTACGCACATGATGTGCGAT
193 TGACCGGCGGCATTGGGGTTCCGATGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
* *
15870092 GGGTGCAGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
257 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCC
* * *
15870157 CCTTAAAGAGCAATTGAGATTTTACAGGTTTCCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGG
322 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
15870222 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACCTCGAGTTTTTAGCTG-ATTTTTTGTGCAT
387 ACACTTTTTTCAAATGGTCACAAAATCTTGTACA-CTCGAGTTTTTAGCTGAATTTTTTGTGCAT
* * * * *
15870286 ACCAACAAAAATACAAGGATCACATCTACAAAGTTTGGGACCAAAACTCCTTCCAAAAAATTTTA
451 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAAATCCTTCGAAAAAATTTTA
* * *
15870351 AAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAGAATAGAAAACGAGTCGTCTTGCCATG
516 AAAAATCCTGAACCGTAAAAAGTTTC-AAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATG
* *
15870416 AAACTTCACGTGAAGGCTTAAGGGTCCATTGCATGAATTTACAAGCCATAAAAATGGCATTGGCA
580 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* **
15870481 TGCAGAAATATGAAGATGTGCCTAAACCCACCTAGCACCCTATCGATCCACGGCTTGCTTATCCC
645 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * * * *
15870546 GTCTCTCAGGCCGGCATAGTGCCCG-CTA---G-CCGCTCGTTTTGTCGATT-GCTTAGGCATAT
710 GTCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
** * * * *
15870605 GGAGTTCATTCCCAGTCTAAGATC-GAATTGAACCGAGGGTTAAGACAGCAGGATCGACAGCATG
775 GGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGAGGCAGCAGGATCGACAGCACG
** * *
15870669 CAGAAGGGGAC--CCGGTCGATCCTCGGCTTACGCATACT-ACCCC
839 CAG-AGGGGACGACCGACCGACCCT-GGCTTGCGCAT-CTCACCCC
* *
15870712 TCTGGCCGGCTGAGCGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATA---AG---------
1 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCA
* * * *
15870765 G----AG--TTC-A-TTC---CCAGTCTAAGATCGGACCGAACCGAGGGTTGCAG-CAGCACATA
66 GTCCAAGCATACGAGTTCATTCCAGTCTAAGATCGGACCGGACCGAGGGTTGCTGACAGCACATG
* * * * * ** *
15870818 CTTGGCTCAGGCATGTGCTGG-GGC-CGTATTT-TTC-TC----CGTCA-C--CGGAGAACCTAA
131 CTGGGCTCGGGCATGTGCTGGTGTCACATTTTTCTTCATCGGGGCACCATCGTCGGAGAACCTGA
* * * * *
15870872 CCGGCGGCATAGTGGTTCTGATGATCGGGGGGGCC-GGGGGTGTGCGTACATGATGTACGATGGG
196 CCGGCGGCATTGGGGTTCCGATGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
15870936 TGCTGGTACTTGGCCCTTATATT--CACCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCC
260 TGCTGGTACTTGGCCCTTATATTGGC-CCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCC
15870999 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
324 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
15871064 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
389 ACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TCGAGTTTTTAGCTGAA-TTTTTTGTGCATG
*
15871129 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGTG-CCAAAAATCCATCCGAAAAAATTTT
452 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG-GACCAAAAATCC-TTCGAAAAAATTTT
* * *
15871193 AAAAAATCTTGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCAT
515 AAAAAATCCTGAACCGTAAAAAG-TTTCAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCAT
15871258 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
579 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * *
15871323 ATGCAGAAATATGAAGATGTGCCTAAACACACATACCACCCTATCGATCCACCGCTTGCGCATCC
644 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * * *
15871388 TGTCTCTCTGGCCGGCGTAGTGCCCACCCGCTCGCCCACCCGCTCATTTTGTCGGTTGGCTTAGG
709 CGTCTCTCTGGCCGGCGTAGTG----CCCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * ** * * *
15871453 GATACGAAGTTCATTCCAAGTCTAAGATTAGACTGGAGGGAAGGTTGCGGCAGTAGGATCGACAG
770 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGAGGCAGCAGGATCGACAG
* ** ** * *
15871518 CACGCAGAGGGTTAC--CCGGTCGATCCCCAGCATGCGCATCCCACCCC
835 CACGCAGAGGG-GACGACCGACCGA-CCCTGGCTTGCGCATCTCACCCC
* * * *
15871565 TCTGGCCGGCTGGGCGCCCGGACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
1 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CC
** * * * *
15871630 AGTGTAAGCATACGGAGTGCATTCCCAATCGAAGATCGGACAGGACCGAGGGTTG-TGACAGCAC
65 AGTCCAAGCATAC-GAGTTCATT-CCAGTCTAAGATCGGACCGGACCGAGGGTTGCTGACAGCAC
* *
15871694 ATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTTTTTTCATCGGGGCACCATTGTCGGAGCA
128 ATGCTGGGCTCGGGCATGTGCTGGTGTCACA--TTTTTCTTCATCGGGGCACCA---TC---G--
* * * *
15871759 TCATTGGAGGACCTGACCGACGGCATTAGGGTTTCGATGATCAGGGGGGCCGGGGGGTGTGCGCA
183 TC---GGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATC-GGGGGGCCGGGGGGTGTGCGCA
* * *
15871824 CATGATATGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCC
244 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCA
*
15871889 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGT
309 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* * *
15871954 GTCTGAAATGGGGACACTTTTTTCAATTGGTCACAAAATCTTGTACAGTTTGAGTTTTTAGCTGA
374 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA-CTCGAGTTTTTAGCTGA
* * ** * *
15872019 ATTGTTTTGTGCATGTCAACAAAAATGCAAGGATCACGTCTACCAAGTTTGGGGTCAAAATTCTT
438 ATT-TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAAATC-C
* * * * * * * *
15872084 TTTGAAAAAATTTTCAAAAATCAC-AAACCGTAAAAAGTTTCGAAATCGTGAAAAACAAAAAATG
501 TTCGAAAAAATTTTAAAAAATC-CTGAACCGTAAAAAGTTTCAAAATCATGAAAAATAGAAAACG
* * *
15872148 AGTTATCTTGCCATGAAACTTTACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATA
565 AGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* *
15872213 AAAATGGCATTGGCGTGCAGAAATATGAAGATGTGCCTAAACCCACCTAGCACCCTATCGATCCA
630 AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
**
15872278 CAGGCTTGCGCATCCCGTCTCT-TAGGTTGGCGTAGTGCCCGCCCACCGCCAGCCCG-TCGTTTC
695 C-GGCTTGCGCATCCCGTCTCTCT-GGCCGGCGTAGTGCCCGCCCA-C-CC-GCCCGCTCGTTTC
* * * *
15872341 ATCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTAAGG
755 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGAGG
* * * *
15872406 TAGCAAGATCGGCAGCACGCAGAGGGG--GACCCGACCGATCCTCGGCTTGCGCATACT-ACCCC
820 CAGCAGGATCGACAGCACGCAGAGGGGACGA-CCGACCGACCCT-GGCTTGCGCAT-CTCACCCC
* *
15872468 TCTGGCCGGCTGAGCGCCCACTCGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
1 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CC
15872533 AGTC
65 AGTC
15872537 TAAGATTAGA
Statistics
Matches: 3126, Mismatches: 349, Indels: 227
0.84 0.09 0.06
Matches are distributed among these distances:
839 2 0.00
840 146 0.05
841 49 0.02
842 97 0.03
843 209 0.07
844 4 0.00
845 3 0.00
847 4 0.00
849 2 0.00
850 3 0.00
851 5 0.00
852 25 0.01
853 185 0.06
854 5 0.00
856 5 0.00
857 1 0.00
859 2 0.00
861 2 0.00
865 1 0.00
866 1 0.00
870 2 0.00
872 2 0.00
874 1 0.00
875 4 0.00
877 9 0.00
878 128 0.04
879 79 0.03
880 3 0.00
881 1 0.00
882 39 0.01
883 255 0.08
884 276 0.09
885 102 0.03
886 1 0.00
887 2 0.00
888 1 0.00
889 3 0.00
891 1 0.00
892 2 0.00
893 3 0.00
894 196 0.06
895 262 0.08
896 234 0.07
897 96 0.03
900 1 0.00
901 6 0.00
902 3 0.00
903 200 0.06
904 202 0.06
905 260 0.08
906 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (881 bp):
TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCA
GTCCAAGCATACGAGTTCATTCCAGTCTAAGATCGGACCGGACCGAGGGTTGCTGACAGCACATG
CTGGGCTCGGGCATGTGCTGGTGTCACATTTTTCTTCATCGGGGCACCATCGTCGGAGAACCTGA
CCGGCGGCATTGGGGTTCCGATGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTT
AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
TTTTTTCAAATGGTCACAAAATCTTGTACACTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCAA
CAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAAATCCTTCGAAAAAATTTTAAAAAA
TCCTGAACCGTAAAAAGTTTCAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTT
CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
CTGGCCGGCGTAGTGCCCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
CATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGAGGCAGCAGGATCGACAGCACGCAGAGGG
GACGACCGACCGACCCTGGCTTGCGCATCTCACCCC
Found at i:15872815 original size:26 final size:26
Alignment explanation
Indices: 15872786--15872838 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15872776 GTTGACTTAG
*
15872786 GCATACGGCGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15872812 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15872838 G
1 G
15872839 ATTGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15873000 original size:26 final size:26
Alignment explanation
Indices: 15872970--15873022 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15872960 GTTGACTTAG
15872970 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15872996 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15873022 G
1 G
15873023 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15875640 original size:681 final size:685
Alignment explanation
Indices: 15873964--15875863 Score: 2564
Period size: 695 Copynumber: 2.8 Consensus size: 685
15873954 AGGGTCGGGC
* **
15873964 ATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGAC
1 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGAC
* * * *
15874029 CGGCGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCACAGATGATGTGCGATGGGT
66 CGGCAGCATTGGGGTTCCGGCGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
** * *
15874094 GCTGGTACTTGGCCCTTATATTGGTGCCCTATCCCTCTTCAAACCTCAAGAACTCACACCCCCTT
131 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
** * * *
15874159 AAAGAGCATTTGAGATTTTACAGGTTTAATGCCAGTAGCCATTAAAGTGTCTAAAATTGGGACAA
196 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTAAAATGGGGACAC
*
15874224 TTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
261 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * *
15874289 AACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAA--C-TCC------ATCTGAAAA
326 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATCCTTCCAAAAAAATTTTAAAA
* ** ** * * * *
15874345 AATCTCGAACCTTAAAAAGTTTCGTAAGTCATAAAAAATAGAAAACAAATCATCTTGCCATGAAA
391 AATCCCGAACCACAAAAAGTTTCAAAAATC-TGAAAAATAGAAAACGAGTCATCTTGCCATGAAA
*
15874410 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC-ACA
455 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCTGCA
*
15874474 GAAATATGAGGATGTGCCTAAACCCACCTACCACCCTATCGATACACGCTTGCGCATCCCGCCGG
520 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACACGCTTGCGCATCCCGCCGG
* * * *
15874539 CGTAGTGCTCGCCTGCACGCCCGCCCGCTTGTTTTGTTGGTTGGCTTAGGCACACGGAGTTCATT
585 CGCAGCGCTAG-CTGCACGCCCGCCCGCTTGTTTTGTCGGTTGGCTTAGGCACACGGAGTTCATT
15874604 CCAAGTCCAAGATCGGACCAGACCGAGGGTTATGGCAGCACATGCTGGGCTCGGG
649 CCAAGTCCAAGATCGG---AGACC--GGG-TA--GCA-CACA------G---GGG
* *
15874659 CATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCACCGGAGAACCTGA
1 -ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGA
15874724 CCGGCAGCATTGGGGTTCCGGCGATCGAGGGGGCC-GGGGGTGTGCGCACATGATGTGCGATGGG
65 CCGGCAGCATTGGGGTTCCGGCGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
* *
15874788 TGCTGGTACTTGGCCCTTATATTGGCCCCCTCTCCCTCATCAAATCTCGAGAACTCACACCCCCT
130 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
15874853 TAAAGAGCATTTGAGATTTTACAGGTTTGCTG-TCAGTAGCCATTAAAGTGTCTAAAATGGGGAC
195 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCT-AGTAGCCATTAAAGTGTCTAAAATGGGGAC
* *
15874917 ACTTTTTTCAAATGGTCACAAAATATTTTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
259 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
15874982 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTA
324 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-TCCTTCCAAAAAAATTTTA
* * *
15875047 AAAAATCCCGAACCAGAAAAAGATTT-AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGGCAT
388 AAAAATCCCGAACCACAAAAAG-TTTCAAAAATC-TGAAAAATAGAAAACGAGTCATCTTGCCAT
* * *
15875111 GAAACCTCACGAGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCTTAAAAATGGCATTGGC
451 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* *
15875176 GTGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTGCGCATCC
516 -TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACAC-GCTTGCGCATCC
* * *
15875241 CGTCTCTCTGGC-CAGCG-TAG-TGCTCGCCTGCCCG-TTCGTTTTGTCGGTTGGCTTAGGCATA
579 CG---C-C-GGCGCAGCGCTAGCTGCACGCCCGCCCGCTT-GTTTTGTCGGTTGGCTTAGGCACA
* * * *
15875302 TGGAGTTCATTCCCAGTCTAAGAT-TG-GACC-GG-A-C-CA-A-GGG
638 CGGAGTTCATTCCAAGTCCAAGATCGGAGACCGGGTAGCACACAGGGG
* *
15875342 -T-TGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATTGCCGGAGCATCACCGGAGAACCTGAC
1 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGAC
* * * * *
15875405 CGGCAACACTGGGGTTCCGGTGATCGGGGGGGCCGGGCGGGGTGTGCGTACATGATGTGCGATGG
66 CGGCAGCATTGGGGTTCCGGCGATCGAGGGGGCC-GG-GGGGTGTGCGCACATGATGTGCGATGG
*
15875470 GTGCTGGTACTTGGCCCGTATATTGG-CCCCTATCCCTCATCAAACCAT-GAGAACTCACA-CCC
129 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCGAGAACTCACACCCC
** * *
15875532 CTTAAAGAGCAGATGAGATTTTACGGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGA
193 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTAAAATGGGGA
* * *
15875597 CACTTTTTTTAAATGGTCACAAAATCTTGTATACTTCGAGTTTTTAGCTGATTTTTTTTGTGCAT
258 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * *
15875662 GCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAATATGCCTTCCAAAAAAGTTTT
323 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAT-CCTTCCAAAAAAATTTT
15875727 AAAAAATCCCGAACCACAAAAAGTTTCAAAAATCTGAAAAATAGAAAACGAGTCATCTTGCCATG
387 AAAAAATCCCGAACCACAAAAAGTTTCAAAAATCTGAAAAATAGAAAACGAGTCATCTTGCCATG
* *
15875792 CAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCT
452 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC-
15875857 TGCAGAA
516 TGCAGAA
15875864 NNNNNNNNNN
Statistics
Matches: 1087, Mismatches: 89, Indels: 72
0.87 0.07 0.06
Matches are distributed among these distances:
680 187 0.17
681 212 0.20
682 31 0.03
683 55 0.05
693 1 0.00
694 2 0.00
695 250 0.23
696 93 0.09
698 1 0.00
699 4 0.00
701 2 0.00
704 4 0.00
705 114 0.10
706 3 0.00
707 46 0.04
708 17 0.02
709 55 0.05
711 3 0.00
712 4 0.00
713 3 0.00
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (685 bp):
ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGAC
CGGCAGCATTGGGGTTCCGGCGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
AAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTAAAATGGGGACAC
TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATCCTTCCAAAAAAATTTTAAAA
AATCCCGAACCACAAAAAGTTTCAAAAATCTGAAAAATAGAAAACGAGTCATCTTGCCATGAAAC
TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCTGCAG
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACACGCTTGCGCATCCCGCCGGC
GCAGCGCTAGCTGCACGCCCGCCCGCTTGTTTTGTCGGTTGGCTTAGGCACACGGAGTTCATTCC
AAGTCCAAGATCGGAGACCGGGTAGCACACAGGGG
Found at i:15878569 original size:28 final size:28
Alignment explanation
Indices: 15878537--15878591 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
15878527 TGACTTAGGA
15878537 ATAGCGGAGT-TCAT-TCCTAGTCCTAAGC
1 ATAGCGGAGTGTCATCTCC-AGT-CTAAGC
15878565 ATAGCGGAGTGTCATCTCCAGTCTAAG
1 ATAGCGGAGTGTCATCTCCAGTCTAAG
15878592 ATGCAGACGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
28 15 0.60
29 7 0.28
30 3 0.12
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (28 bp):
ATAGCGGAGTGTCATCTCCAGTCTAAGC
Found at i:15879508 original size:26 final size:26
Alignment explanation
Indices: 15879472--15879523 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15879462 TGACTTAGGC
*
15879472 ATACGGAGTTCATTCCCAATCTAAGA
1 ATACGAAGTTCATTCCCAATCTAAGA
*
15879498 ATACGAAGTTCATTCCCAGTCTAAGA
1 ATACGAAGTTCATTCCCAATCTAAGA
15879524 TCGAACCGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAATCTAAGA
Done.