Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 84 of 195
Found at i:15880393 original size:26 final size:26
Alignment explanation
Indices: 15880363--15880415 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15880353 GTTGACTTAG
15880363 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
**
15880389 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15880415 G
1 G
15880416 ATCACATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15882068 original size:715 final size:714
Alignment explanation
Indices: 15880498--15882452 Score: 2887
Period size: 715 Copynumber: 2.7 Consensus size: 714
15880488 CGGGGCACCA
* * * *
15880498 TCGAGAACTCACACCCCCTTAAAGAGCATTTGACATTTTACAGGTTTACTGTCAATAGCCATTAA
1 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
*
15880563 AGTGTCTGTAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
66 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * *
15880628 TGACTTTTTTTATGCATGCCAACAAAAACACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACG
131 TGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * * * *
15880693 CCTTCCAAAAAAATTTTAAAAAATTCCAAACCGTAAAAGGTTTTGAAAATCATGAAAAATAGAAA
196 CCTTCC-AAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCGAAAATCATGAAAAATAGAAA
* * *
15880758 ACGAGTGATCTTGCCATGAAACTTCACGTTAAGGCTTAAGTGACCATTGTATCAATTTACAAGCC
260 ACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATCAATTTACAAGCC
** * *
15880823 ATAAAAATGGCGTTGGCAGGTAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGAT
325 ATAAAAATGGAATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGAT
* * * * * * * * *
15880888 CCATGG-TTGGCGCATCTCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGTCCGTTCGTTTCC
390 CCACGGCTT-GCGCATCCCGTCTCTCTGGCCGACGTTGTGCCCACCCGCCCGCCCATTCGTTTCA
* **
15880952 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-GTACTAAGGGTTGCAG
454 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAG-ACCGAGGGTTGCAG
* * *
15881016 CAGCACATGCTAGGCTAGGGCATGTGCTGGTGCCGTATTTTTCTTCGCTGGGGCACCATTGTTGG
518 CAGCACATGCTAGGCTAGGGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCGTCGG
* * ** **
15881081 AGCATCATCGGAGAACCCGACCGACGGTATTGGGGTTCCGGTGATTGGAGGGGCCGGGGGGGTGT
583 AGCATCATCCGAGAACCCGACCGACGGCATTGGGGTTCCGACGATCCGAGGGGCCGGGGGGGTGT
*
15881146 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTCATATTGGTCCCCTATCCCTCATCAAA
648 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTCATATTGGCCCCCTATCCCTCATCAAA
15881211 CC
713 CC
* *
15881213 TCAAGAACACACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
1 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * *
15881278 AGTGTGTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGATTTTTTAGC
66 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* ** *
15881343 TGAATTTTTTTATGCATGCCAACAAAAATACGAGGATCACGTCTTTCGAGTTTGGGGCCAAAACT
131 TGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* *
15881408 CCTTCCAAAAAACTTTTTAAAAATCCCGAACCATAAAAAGTTTGGAAAATCATGAAAAATAGAAA
196 CCTTCCAAAAAA-TTTTAAAAAATCCCGAACCATAAAAAGTTTCGAAAATCATGAAAAATAGAAA
* * * * *
15881473 ACGAGCCCTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGATTTTACAAGCC
260 ACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATCAATTTACAAGCC
*
15881538 ATAAAAATGGAATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
325 ATAAAAATGGAATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGAT
*
15881603 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTTGTGCCCACCCGCCCGCCCACTCGTTTCAT
390 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTTGTGCCCACCCGCCCGCCCATTCGTTTCAT
* * *
15881668 CGGTTGGCTTGGGCATATGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACAGCA
455 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCAGCA
* * *
15881733 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATCGTCGGAG
520 GCACATGCTAGGCTAGGGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCGTCGGAG
* * * **
15881798 CATCATCCGAGAACCTGACTGGCGGCATTGGGGTTCCGACGATCCG-GGTTCC-GGGGGGTGTGC
585 CATCATCCGAGAACCCGACCGACGGCATTGGGGTTCCGACGATCCGAGGGGCCGGGGGGGTGTGC
* *
15881861 GCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
650 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTCATATTGGCCCCCTATCCCTCATCAAACC
15881926 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
1 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* *
15881991 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAATATCTTGTACACTTCGAGTTTTTGGC
66 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * *
15882056 TGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCACGGCTAGCAAGTTTGGGGCCAAAACT
131 TGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * * * * *
15882121 CCATCTGAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTTAAAAATAAAAA
196 CCTTC-CAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCGAAAATCATGAAAAATAGAAA
* * * * *
15882186 ACGAGTCGTCTTGCCTTGAAAGTTCACGTGAAGGCTTAAGGGACCATTGT-TTACATTTACAGGC
260 ACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATCA-ATTTACAAGC
* * *
15882250 CATAAAAATGGAATTGGCATGCAGAAATATGAAGATATCCCTAAACCCACCTACCTCCCTATCGA
324 CATAAAAATGGAATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGA
* * * * *
15882315 CCCACGGCTTACGCATCCCGTCTCTCTGGCCGATGTAGTGCCCGCCCACCCGCCCGCCCATTCAT
389 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT--TG--TGCCCACCCGCCCGCCCATTCGT
*
15882380 TTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCTC-AGACCAGACCGAGGGTT
450 TTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACCGAGGGTT
15882444 GCAGCAGCA
514 GCAGCAGCA
15882453 GGATCAGCAG
Statistics
Matches: 1116, Mismatches: 114, Indels: 18
0.89 0.09 0.01
Matches are distributed among these distances:
712 2 0.00
713 453 0.41
714 16 0.01
715 554 0.50
716 4 0.00
717 87 0.08
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.26
Consensus pattern (714 bp):
TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
TGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
CCTTCCAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCGAAAATCATGAAAAATAGAAAA
CGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATCAATTTACAAGCCA
TAAAAATGGAATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATC
CACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTTGTGCCCACCCGCCCGCCCATTCGTTTCATC
GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCAGCAG
CACATGCTAGGCTAGGGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCGTCGGAGC
ATCATCCGAGAACCCGACCGACGGCATTGGGGTTCCGACGATCCGAGGGGCCGGGGGGGTGTGCG
CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTCATATTGGCCCCCTATCCCTCATCAAACC
Found at i:15882592 original size:26 final size:26
Alignment explanation
Indices: 15882556--15882608 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15882546 GTTGACTTAG
15882556 GCATACGGAGTTCATTCCC-GATCTAA
1 GCATACGGAGTTCATTCCCAG-TCTAA
*
15882582 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15882608 G
1 G
15882609 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15883426 original size:902 final size:902
Alignment explanation
Indices: 15881680--15883513 Score: 2723
Period size: 902 Copynumber: 2.0 Consensus size: 902
15881670 GTTGGCTTGG
15881680 GCATATGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACAGCAGCACATGCTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACAGCAGCACATGCTGGG
* * * ** * *
15881745 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATCGTCGGAGCATCATCCGAGA
66 CTCAGGAATGTGCTAGTGCCGCATTTTTCTTCGCCGGGGCACCATCATCGGAGCATCATCAGAGA
* * ** **
15881810 ACCTGACTGGCGGCATTGGGGTTCCGACGATCCGGGTTCCGGGGGGTGTGCGCACATGATGTGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCCGGGGGCCGGGGGGTGTGCGCACATGATGTGCA
* *
15881875 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
196 ATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTACCCCTCATCAAACCTCGAGAACTCACAC
15881940 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
15882005 GGACACTTTTTTCAAATGGTCACAATATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTTTG
326 GGACACTTTTTTCAAATGGTCACAATATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTG
* * * **
15882070 CATGCCAACAAAAATACAAGGATCACGGCTAGCAAGTTTGGGGCCAAAACTCCATCTGAAAAAAT
391 CAAGCCAACAAAAATACAAGGATCACGGCTACCAAGTATGGGGCCAAAACTCCATCCAAAAAAAT
* * *
15882135 TTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTTAAAAATAAAAAACGAGTCGTCTTGC
456 TTTAAAAAATCCCGAACCAGAAAAAGTTTCAAAAATAGTGAAAAATAAAAAACGAGTCGTCTTGC
* * * * *
15882200 CTTGAAAGTTCACGTGAAGGCTTAAGGGACCATTGTTTACATTTACAGGCCATAAAAATGGAATT
521 CATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTTGACATTTACAAGCCATAAAAATGGAATT
** * * * *
15882265 GGCATGCAGAAATATGAAGATATCCCTAAACCCACCTACCTCCCTATCGACCCACGGCTTACGCA
586 GGCACACAGAAATATGAAGATATCCCTAAACCAACCTACCACCCTATCAACCCACGGCTTACACA
* *
15882330 TCCCGTCTCTCTGGCCGATGTAGTGCCCGCCCACCCGCCCGCCCATTCATTTCATCGGTTGGCTT
651 TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCGCCCACTCATTTCATCGGTTGGCTT
* *
15882395 AGGCATACGGAGTTCATTCCCAGTCTAAGCTCAGACCAGACCGAGGGTTGCAGCAGCAGGATCAG
716 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAACAGGATCAG
* * *
15882460 CAGCACATAGAGGGGGACCTGACTGATCCCCGGCTTGCGCATCTCGCCCCTCTGGCCAGTTGAGC
781 CAGCACACAGAGGGGGACCGGACTGATCCCCGGCTTGCACATCTCGCCCCTCTGGCCAGTTGAGC
* *
15882525 GCCTGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC-GATCTAA
846 GCCTGCACGCTCATTTCGTGGCTTGACTTAGGCATACAGAGTTCATTCCCAG-TCTAA
* * *
15882582 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGC-GACAGCACATGCTGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACAG-CAGCACATGCTGG
* * *
15882646 GCTCAGGAATGTGCTAGTGCCGCATTTTTCTTCGCCGGGGCTCTATCATCGGAGCATCGTCAGAG
65 GCTCAGGAATGTGCTAGTGCCGCATTTTTCTTCGCCGGGGCACCATCATCGGAGCATCATCAGAG
* * *
15882711 AACCTGACCGATGGCATTGGGTTTTCGACGAT-CGAGGGGCCGGGTGGGGGTGTGCGCACATGAT
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCCG-GGGGCC--G-GGGGGTGTGCGCACATGAT
*
15882775 GTGCAATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTACCCCTCATCAAACCTCGAG-GCT
191 GTGCAATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTACCCCTCATCAAACCTCGAGAACT
15882839 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
256 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
15882904 AATGGGGACACTTTTTTCGAATGGTCACAA-ATCTTGTACACTTCGATTTTTTAGCTG-ATTTTT
321 AATGGGGACACTTTTTTCAAATGGTCACAATATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
15882967 TTTGTGCAAGCCAACAAAAATACAAGGATCACGTCTACCATGTATGGGGCCAAAACTCCTTCCAA
386 TTT-TGCAAGCCAACAAAAATACAAGGATCACGGCTACCAAGTATGGGGCCAAAACTCCATCCAA
** *
15883032 AAAAATTTTAAAAAATGTCGAACC-GAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCG
450 AAAAATTTTAAAAAATCCCGAACCAGAAAAAGTTTCAAAAATAGTGAAAAATAAAAAACGAGTCG
* *
15883096 TCTTGCCATAAAACTTCACGTGAAGGCTTAAGGTACCGTTGTATGA-ATTTACAAGCCATAAAAA
515 TCTTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGT-TGACATTTACAAGCCATAAAAA
* * * *
15883160 TGGAATTGGCACACAGAAATATGAAGATGTGCCTAAACCAACCTATCACCCTATCAATCCACGGC
579 TGGAATTGGCACACAGAAATATGAAGATATCCCTAAACCAACCTACCACCCTATCAACCCACGGC
* * ** * * * *
15883225 TTGCACATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCGGCCCGCCCGCTCGCTCGTTTCGTCGG
644 TTACACATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCGCCCACTCATTTCATCGG
* * * * * * * *
15883290 TTGGCTTAGGCCTACGGAGTTCATTCCTAGTCTAAGATCGGATCGGATCGAGGGTTGCGGCAATA
709 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAACA
* * *
15883355 GGATCAGCAGCACACAGAGGGGGACCCGGTC-GATCCCCGGCTTGCACATCTTGCCCCTCTGGTC
774 GGATCAGCAGCACACAGAGGGGGA-CCGGACTGATCCCCGGCTTGCACATCTCGCCCCTCTGGCC
* *
15883419 GGTTGAGCGCCTGCACGCTCGTTTCGTGGCTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
838 AGTTGAGCGCCTGCACGCTCATTTCGTGGCTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
15883484 GCATATGGAGTTCATTCCCAGTCTAAGATC
1 GCATATGGAGTTCATTCCCAGTCTAAGATC
15883514 AGATCGAACC
Statistics
Matches: 834, Mismatches: 89, Indels: 18
0.89 0.09 0.02
Matches are distributed among these distances:
901 3 0.00
902 551 0.66
903 107 0.13
904 97 0.12
905 76 0.09
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (902 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACAGCAGCACATGCTGGG
CTCAGGAATGTGCTAGTGCCGCATTTTTCTTCGCCGGGGCACCATCATCGGAGCATCATCAGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCCGGGGGCCGGGGGGTGTGCGCACATGATGTGCA
ATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTACCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAATATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTG
CAAGCCAACAAAAATACAAGGATCACGGCTACCAAGTATGGGGCCAAAACTCCATCCAAAAAAAT
TTTAAAAAATCCCGAACCAGAAAAAGTTTCAAAAATAGTGAAAAATAAAAAACGAGTCGTCTTGC
CATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTTGACATTTACAAGCCATAAAAATGGAATT
GGCACACAGAAATATGAAGATATCCCTAAACCAACCTACCACCCTATCAACCCACGGCTTACACA
TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCGCCCACTCATTTCATCGGTTGGCTT
AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAACAGGATCAG
CAGCACACAGAGGGGGACCGGACTGATCCCCGGCTTGCACATCTCGCCCCTCTGGCCAGTTGAGC
GCCTGCACGCTCATTTCGTGGCTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
Found at i:15884134 original size:26 final size:26
Alignment explanation
Indices: 15884105--15884157 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15884095 GTTGACTTAG
15884105 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATATAGAGTTCATTCCCAGTCTAA
* * *
15884131 GCATGTGGAGTTCATTCCTAGTCTAA
1 GCATATAGAGTTCATTCCCAGTCTAA
15884157 G
1 G
15884158 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATAGAGTTCATTCCCAGTCTAA
Found at i:15886354 original size:905 final size:899
Alignment explanation
Indices: 15883755--15891218 Score: 9113
Period size: 877 Copynumber: 8.4 Consensus size: 899
15883745 TTAAAAATTG
* * * *
15883755 TGAAACTTGACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAGGGCATAAAAATGGCATTGG
1 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * *
15883820 CACACAGAAATATGAAGATGTGCCTAAAGCAACCTACCACCCTATCGATCCACGACTTGCGCATC
66 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
** * *
15883885 CCGTCTCTCTCACCGGCGTAGT----GCCCACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTTG
131 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
*
15883946 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCAGACCGAGGGTTGCAGTAGCAGGATCGAC
196 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGCAGCAGCAGGATCGAC
* * ** * ** *
15884010 AGCACGTAGAGGGGGACCCGA-TCAATCATCGGCTTGTGCATCTAGCCCCTCTGGTCGGCTGAGC
260 AGCACGCAGAGGGGGACCCGACT-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * * * * * **
15884074 GCCCACACGCTCGTTCCATAGGTTGACTTAGGCATATAGAGTTCATTCCCAGTCTAAGCATGTGG
324 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA-GGAGTTCATT-CTAG-C--AGCATACGG
* * * * *
15884139 AGTTCATTCCTAGTCTAAGATCGGACTGGACCGAGGGTTGTGGTAGTACATACTGGGCT-CGAGC
384 AGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCCG-GC
* * *
15884203 ATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATTG-CTGGAGCATCACCAGAGAACCTGA
448 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCACCGGAGAACCTGA
* * * * * * *
15884267 CCGACGGCAATGGGGTTCCGGCGATCGGGGGGGTCAAGCGGGGGGTGCACACATGATGTGCGATG
512 CCGGCGGCATTGGGGTTCAGGCGATCGGGGGGGCCGAG-GGGGTGTGCGCACATGATGTGCGATG
* * *
15884332 GGTGCTGGTACTTGGCCATTATATTGGCCCACTATCCCTCATCAAACCTCAAGAACTCACACCCC
576 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * *
15884397 CCTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCACTAAAGTGTCTGAAATGGGGA
641 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
*
15884462 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCAT
706 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * *
15884527 GCCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGAGGCCAAAAATCCATCCGAAAAAATTT
771 G-CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* * *
15884592 TAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGTGTCATCTTGCCA
835 TAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCA
*
15884657 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTGTGAATTTACAAGCCATAAAAATGGCATTGG
1 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * *
15884722 CATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATC
66 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * ** * *
15884787 ACGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCACCCGCAAGCTCGTATCATCGGTTGGCTTAG
131 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * * * * *
15884852 TCATACGGAGTTCATTCCTAGTCTAAGATTAAACCAGATCGAGGGTTAC-GATAGCAAGATCGAC
196 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAG-CAGCAGGATCGAC
* * * *
15884916 AGCATGCAGAGGGGGACCTGA-TCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAGC
260 AGCACGCAGAGGGGGACCCGACT-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
15884980 GCCCGCACGCTCGTTTCGT-GG--G---T-----T--GA---C--T-TAG--GCATACGGAGTTC
324 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAGGAGTTCATTCTAGCAGCATACGGAGTTC
** * *
15885024 ATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGC
389 ATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCCGGCATGTGC
* * * * *
15885089 TGGTACCTCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCACCAGAGAACCTGACCGGCGA
454 TGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGG
* *
15885154 CATTGGGGTTCAGGCGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGCTGCAGG
519 CATTGGGGTTCAGGCGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
*
15885218 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGA
584 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
*
15885283 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTT
649 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * * * *
15885348 TCGAGTGGTCACAAAATCTTGTACGCTTGGAGTTTTTAGTTGAATTTTTTTGTGCATGCCAAAAA
714 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
* *
15885413 AAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTCAAAAATC
779 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
* * *
15885478 CCGAACCATAATAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCATCTTGCCA
844 CCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCA
*
15885534 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAATGGCATTGG
1 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* *
15885599 CACACAGAAATATGAAGATGTGCTTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
66 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * * *
15885664 CCGTCTCTTTGGCCGGCATAGTGCCCGCCCGCCTGCCCGCCCGCTCATTTCGTCAGTTGGCTTAG
131 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * ** * * *** * *
15885729 GCGTACGGAGTTCGTTCCCAGTCTAAGATTGGATCAGACTGAGGGTTATGGTAGCAGGATCTACA
196 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCGACA
* * * * * *
15885794 GTACGCAGAGGAGGACCCGACTGATCCTCGGCTTACGCATCCCGCCCCTCTGGCCGACTGAGTGC
261 GCACGCAGAGGGGGACCCGACTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * * *
15885859 CCACACGCTCGTTTCATGGGTTAACTTTGGCATACGGAGTTCATTCCTAGTCCAAGCATACGGAG
326 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA-GGAGTTCATT-CTAG--C-AGCATACGGAG
* * * *
15885924 TTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGTAGTACATGTTGGGCTCCGGCATG
386 TTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCCGGCATG
* ** *
15885989 TGCTGGTGCCCCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGG
451 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGG
* *
15886054 CGGCATTGGGGTTCAGGCGATCGGCGGGGCCGGAGGGGGTGTGCGCACATGATGTGCGATGGGGG
516 CGGCATTGGGGTTCAGGCGATCGGGGGGGCC-GAGGGGGTGTGCGCACATGATGTGCGATGGGTG
15886119 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
580 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * *
15886184 AAGAGCATTTGAGATTTTACAGGTTTGCTGGCTGTAGCCATTAAAGTGTCTGAAATGGGGACTCT
645 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
15886249 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
710 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * * * **
15886314 ACAAAAATACGAGGATCACGTCTACCATGTTTGAGGCCAAAACTCTTTTTGAAAAAATTTTAAAA
775 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
* * * * *
15886379 AATCCCTAACCGCAAAAAGTTTCAAAAATTGTGAAAATTAGAAAACGAGTCATCTCGCCA
840 AATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCA
**
15886439 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTTC
1 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* *
15886504 CACGCAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATTGATCCACGGCTTGCGCATC
66 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * *
15886569 TCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCCTGCCC-CATCGTTTCGTCGGTTGGCTTA
131 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGC-TCGTTTCGTCGGTTGGCTTA
* * * * **
15886633 GGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCAGCAGCAAGATCGGT
195 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCGAC
* * * * * *
15886698 AGCATGCAGAGGGGGACCCGACCGATCCCCGTCTTACACATCCCGCCCCTCTGGCCGGCTGAGTG
260 AGCACGCAGAGGGGGACCCGACTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
*
15886763 CCCGCACGCTCGTTTCGTGGGTTGAC-T-----TA-G-G--CA---TA-C-G---A---AGTTAA
325 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAGGAGTTCATTCTAGCAGCATACGGAGTTCA
* * *
15886807 TTCCCAGTCTAAGATTGGA-TCGGACCGAGGGTTGCGGTAGCACATACTGGGCT-CGAGCATGTG
390 TTCCCAGTCTAAGATCGGACT-GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCCG-GCATGTG
* * ** * *
15886870 CTGGTGCCTCATTTTTCTTTGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACA
453 CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCG
* *
15886935 GCATTGGGGTTCCGGCGATCGGGGGGGCC-AGGGGGTGTGCGCACATGATGTGCGATGGGTGCTA
518 GCATTGGGGTTCAGGCGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* * * * *
15886999 GTATTTAGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTTGAGAACTCACAGCCCCTTAAAG
583 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
*
15887064 AGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
648 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
*
15887129 TTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTTTTTTGTGCATGCCAAAA
713 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AAA
* * *
15887194 AAAAATACAAGGATCACGTCTACCAAGGTTGGGGCCAAAAATCCTTTCGAAAAAATTTTAAAAAA
777 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* * **
15887259 TCTCGAACCGTAATAAGTTTCGTAAATCGTGAAAAATAG-AAACTGAGTCATCTTGCCA
842 TCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC-GAGTCATCTTGCCA
*
15887317 TGAAACTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGCATTGG
1 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * * *
15887382 CATGCAGAAATATGACGATGTGCCTAAACCCACCTACTACCCTATCGATCCACGACTTACGCATC
66 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * *** * ***
15887447 CCATCTCTCTGGCCAGCGTAGT----GCCTAACCGCCCGCCCGCTCGTTTCATCAACTGGCTTAG
131 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * * *
15887508 GGATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTGCAGCAGCAAGATTGGCA
196 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCGACA
* * * * * *
15887573 GTAGGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCTTTTGGCCGGCTGAGCAC
261 GCACGCAGAGGGGGACCCGACTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* *
15887638 CCGCACACTCGTTTCGTGGGTTGACTTAGTCATAAGGAGTTCATTCTAGTCTAAGCATACGGAGT
326 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT-AGGAGTTCATTCTAG-C--AGCATACGGAGT
* * * **
15887703 TCATTCCCAGTCTAAGATCGAACAGGACCGAGGGTTGCGGCAGCACATGTTGGGCTTGGGCATGT
387 TCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCCGGCATGT
* * *
15887768 GCTGGAGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGAC
452 GCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGC
* * *
15887833 GGTATTGGGGTTTC-GGTGATC-GAGGGGCCGAGGGGGTGTGCG-ACATGATGTGCGATGGGTGC
517 GGCATTGGGG-TTCAGGCGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* * * *
15887895 TGGTACTTGGCCCTTATATTTGCCCCCTATCCCTCATTAAACCTTGAGAACTCAGACCCCCTTAA
581 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * * *
15887960 AGGGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAATTGTCTGAAATGGGGACACTA
646 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* *
15888025 TTTTCAAATGGTCACAAAAACTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAA
711 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * *
15888090 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGGCAAAACTCTTTCCAAAAAAATTTTAAAAA
776 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
** ** * * *
15888155 ATCCCGAACCACAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTACCA
841 ATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCA
15888214 TGAAACTTCACGTGAAGGCTTAAGGGACCA-TGTTATGAATTTACAAGCCATAAAAAATGGCATT
1 TGAAACTTCACGTGAAGGCTTAAGGGACCATTG-TATGAATTTACAAGCCAT-AAAAATGGCATT
* *
15888278 GGCACACAGAAATATGAAGCTGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
64 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * * * *
15888343 TCCCGCCTCTATGGCCGGCGTAGT----GCCCG---G-CCGCCTGTTTGTTTCATCGATTGGCTT
129 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * *** *
15888400 AGGTATACGGAGTTCATTCCCAATCTAAAATCAAACCAGACCGAGGGTTATGGTAGCAGGATCGA
194 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCGA
* * * * * * * *
15888465 CAGCACGCAAAGGGGGACCCGGCCGATCCCCGGCTTACGCATCTCGCCCGTCT-GCCAGCTAAGC
259 CAGCACGCAGAGGGGGACCCGACTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * * *
15888529 GCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCCAATCTAAGCATACG
324 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA-GGAGTTCATT---CTAGC--AGCATACG
* * *
15888594 GAGTTCATTCCCAGTC-AGAGATCGGA-TCAGACCGAGGGTTACGACAGCACATGCTGGGCT-CG
383 GAGTTCATTCCCAGTCTA-AGATCGGACT-GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCCG
*
15888656 ACATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA---TC---GC--CA---GAGAACCTG
446 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTG
* * *
15888710 ACAGGCGGCAATGGGGTTCTA-GCGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGTGCAAT
511 ACCGGCGGCATTGGGGTTC-AGGCGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGAT
* *
15888773 GGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATTAAACCTCGAGAACTCACA-CC
575 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
*
15888837 TCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
640 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* *
15888902 ACACTTTTTTCAAATAGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTGTTTGTGC
705 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT-TTTGTGC
* * *
15888967 ATGCCAACAAAAATACAAGGATCTCGTCTACCAATTTTGGGGCCAAAACTCCTTCCGAAAAAATT
769 ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * *
15889032 TAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
834 TTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCC
15889097 A
899 A
*
15889098 TGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
1 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
** * * *
15889163 CACATAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCTTC
66 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * * **
15889228 CCGTCTTTCCGGCCGACGTAGTGCCCGCCCACCCGCCCGCTTGCTCGTTTCGTCGGTTGGCTTAG
131 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * *
15889293 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGAGCGAGGGTTGCAGCAGCAGGATCGGCA
196 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCGACA
* * * * * *
15889358 TCACGTAGAGGGGGACCCGA-TCGATTCTCGACTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCG
261 GCACGCAGAGGGGGACCCGACT-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
15889422 CCCGCACGCTCGTTTCGT-GG--G---T-----T--GA---C--T-TAG--GCATACGGAGTTCA
325 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAGGAGTTCATTCTAGCAGCATACGGAGTTCA
* *
15889466 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT
390 TTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCCGGCATGTGCT
* * * *
15889531 GGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCACTGGAGAACCTGACCGGCGGC
455 GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGC
* * * *
15889596 ATTGGGGTTC-GACGATCAGTGGGGCCAAGGGGGGTGTGCGCACATGATGTGCGAT-GGTGCTGG
520 ATTGGGGTTCAGGCGATCGGGGGGGCCGA-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* * * * *
15889659 TACTTGTCCCTTATATTGGCCCCCTATCCCTCATCAAACTTCAAGAACTCACACCCCCTGAAAGG
584 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* * *
15889724 GCATTTGAGAATTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCCGAAATGGGGACACTTTTT
649 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * * *
15889789 TCGAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAA
714 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
* ** * *
15889854 TAATACAAGGATCACGTCTAGAAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATC
779 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
** * *
15889919 TGGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
844 CCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCA
*
15889975 TGAAACTTCACGTGCAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
1 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
15890040 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
66 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * ** ** * * * * *
15890105 CCGTCTCTCTGGCCGGTGTAGTACCCGCCCGCGTGTTCGCTCGCTCATTTCATTGGATGGCTTAG
131 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
** ** **
15890170 GCATA-GGAGTTCATTCCCAGTCTAAGATTGGACTGGACCGAGGGTTGCGGCAGCACGCAGAGGG
196 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT---GCAGCA-GCAG-GAT
* * * * * *
15890234 GGACCGGAC-C-GAGGGTTACGGTAGCAAGATCGGCAGACAGATCCCAGGCTTGCACATCCCGCC
256 CGACAGCACGCAGAGGG----GG-A-C-----C--C-GACTGATCCCCGGCTTGCGCATCCCGCC
* * * *
15890297 CCTCTAGCCGGCTAAGCGCCCGCACACTCGTTT--T--G-TG-----GG--T-TGA---C--T-T
307 CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAGGAGTTCATTCT
* *
15890343 AG--GCATACGGAGTTCATTCCCAGTCTATA-ATCAGACCGGACCGAGGGTTGCGGCAGCACATG
372 AGCAGCATACGGAGTTCATTCCCAGTCTA-AGATCGGACTGGACCGAGGGTTGCGGCAGCACATG
* * * * * * *
15890405 CTGGGCTCAGGCATGTGTTGGTGCCACATTTTTTTTC-ACTGGGGCACCATCG-CAGAGCATCGC
436 CTGGGCTCCGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCAC
* * * * *
15890468 CAGAGAACCTGATCGGCGACATTGGGGTTCCGACGATCGGGGGGG-CG-GGGGGTGTGCGCACAT
500 CGGAGAACCTGACCGGCGGCATTGGGGTTCAGGCGATCGGGGGGGCCGAGGGGGTGTGCGCACAT
* * * * *
15890531 GATGTGCGATGGGTACTGGTACTTGGCCTTTATATTGGCCCCCTATCCCACATCAAACATCAAGA
565 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* * *
15890596 ACTCACACCCCCTTAAAGAGCAATTGAGATTTTACAGGTTTGTTGCTAGTAGCCATTAAAGTGTC
630 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * *
15890661 TTAAATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATT
695 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* ** * * *
15890726 TTTTTGGGCATGCCAGCAAAAATAAAAGGATCACGTCTACCAAGTTTGGGACTAAAACTCCTTCC
760 TTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * * *
15890791 AAAAAAATTTTAAAAGATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAGTAGAAAACGAGT
825 GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
*
15890856 CGTCTTGCCA
890 CATCTTGCCA
15890866 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
1 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * *
15890931 CATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATC
66 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* ** * * * * * *
15890996 CTGTCTCTCTATCCAGCGTA--G--CGCCCGCCCGCTCGTCTG-TACGTTTCATCGATTGGCTTA
131 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCT-CGTTTCGTCGGTTGGCTTA
* * * *
15891056 GGCATGCAGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTT----------G-T-GGC
195 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCGAC
* * * * * * *
15891109 AGCACGCAGAGGGGGATCCGA-TCGATCTCCAGG-TTACGCATCCTGCTCCTATGGCCGGTTGAG
260 AGCACGCAGAGGGGGACCCGACT-GATC-CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
15891172 CGCCCGCACGCTCG-TT-GTGGGTTGACTTAGGCATATGGAGTTCATTC
323 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA-GGAGTTCATTC
15891219 CCAGTCTATC
Statistics
Matches: 5724, Mismatches: 669, Indels: 363
0.85 0.10 0.05
Matches are distributed among these distances:
858 2 0.00
859 42 0.01
860 6 0.00
861 1 0.00
862 3 0.00
865 60 0.01
866 39 0.01
867 2 0.00
868 1 0.00
869 5 0.00
871 7 0.00
872 3 0.00
873 7 0.00
874 169 0.03
875 3 0.00
876 49 0.01
877 1017 0.18
878 594 0.10
879 155 0.03
880 154 0.03
881 9 0.00
882 5 0.00
883 247 0.04
884 251 0.04
885 8 0.00
886 4 0.00
887 38 0.01
888 40 0.01
889 2 0.00
890 32 0.01
891 555 0.10
892 70 0.01
893 220 0.04
894 162 0.03
895 64 0.01
896 6 0.00
897 155 0.03
898 304 0.05
899 146 0.03
900 5 0.00
902 137 0.02
903 157 0.03
904 3 0.00
905 629 0.11
906 156 0.03
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCGACA
GCACGCAGAGGGGGACCCGACTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAGGAGTTCATTCTAGCAGCATACGGAGTTCAT
TCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCCGGCATGTGCTG
GTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCA
TTGGGGTTCAGGCGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAA
ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC
GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCA
Found at i:15887702 original size:25 final size:26
Alignment explanation
Indices: 15887668--15887718 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 26
15887658 TTGACTTAGT
*
15887668 CATAAGGAGTTCATT-CTAGTCTAAG
1 CATAAGGAGTTCATTCCCAGTCTAAG
*
15887693 CATACGGAGTTCATTCCCAGTCTAAG
1 CATAAGGAGTTCATTCCCAGTCTAAG
15887719 ATCGAACAGG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 14 0.61
26 9 0.39
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (26 bp):
CATAAGGAGTTCATTCCCAGTCTAAG
Found at i:15892367 original size:26 final size:26
Alignment explanation
Indices: 15892330--15892382 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15892320 GTTGACTTAG
* * *
15892330 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
15892356 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
15892382 G
1 G
15892383 ATCGGATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:15893312 original size:900 final size:900
Alignment explanation
Indices: 15891488--15896581 Score: 6938
Period size: 906 Copynumber: 5.7 Consensus size: 900
15891478 GTTGACTTAG
* * * *
15891488 GCATACGGAGTTCATTCCCAGTCTATGATCAGATCGGGCCGAGGGTTGCGGCAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
15891553 CTCGGGCATGTGCTGGTGCCACATTTTTTTTCACT-GGGG---CA----C----CATCGCCAGAG
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCTCGGGGCACCATCGTCGGAGCATCGCCAGAG
* ** * *
15891606 AACCTGATCGACGGTATTGGGGTTTTGGCGATCGGGGGGTCGGGGGGTGTGCGCACATGATGTGC
131 AACCTGATCGACGGCATTGGGGTTCCGGTGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * * * *
15891671 GATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCACATCAAACATTGAGAACTCCCA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
15891736 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATG
* *
15891801 GGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAACTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
15891866 GCATGCCAACAAAAATTCAAGGATCACGTCTACCAACTTTGGGGCCAAAACTCCTTCCAAAAAAA
391 GCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
* * *
15891931 TTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTCG
456 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
** *
15891996 CCATGAAACTTCACGTGAAGGCTTAAAAGACCATTGTATGAATTTACAAGCCAT--GAA--A-AT
521 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGACAT
*
15892056 T--CA--C-G-----TGAAGATGTGCCTAAACCAACCTACCACCCTATCAATCCACGGCTTGCGC
586 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGC
* * * * **
15892111 ATCCCGTCTCTCTGGACGACGTAGTG-CT---TG-C-CTGCTTGCTCGTTTCGTCGGTTGGCTTA
651 ATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCGCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * * *
15892170 GGCATACGGAGTTCATTTCCAGTCCAAGATCGGACCGGACCGAGTGTT-CCAGTAGC-GAGATTG
716 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGA-TAGCAG-GATCG
* * ** * **
15892233 GCAACACACAGAGGGGGATCCGACCGATCCTC-AGCTTATGCATCCTGCCCCTCTGGCCAACTGA
779 GCAGCACGCAGAGGGGGA-CCGGTCGATCCTCGA-CTTGTGCATCCTGCCCCTCTGGCCGGCTGA
** * * * *
15892297 GCGCCCGCACGTTCGTTTCGGGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
842 GCGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAA
* * * ** * * *
15892356 GCATACGAAGTTCATTCCCAATCTAAGATCGGATTGGACCGAGGGATGCAGCAGCACATGCTGCG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
** **
15892421 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTC-CTCGGGGCACCATCGTCGGAGCATCGCCATTG
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCTCGGGGCACCATCGTCGGAGCATCGCCAGAG
* * * **
15892485 AACCTGACCGGCGGTATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
131 AACCTGATCGACGGCATTGGGGTTCCGGTGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
15892550 GATGGGTGCTCGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
15892615 -CCCCTTGAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATG
*
15892679 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
15892744 GCATGCCAAAAAAAATACAAGGATTACATCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAAAAA
391 GCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
* * * *
15892809 GTTT-AAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAAGGAGTTGTCTTG
456 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
15892873 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACTAGCCATAAAAATGACAT
521 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGACAT
* * * * * *
15892938 TGTCACGCAGAAATATGAAGATGCGCCTAAACCCACCTGCCACCCTATCAATCCACGGCTTACGT
586 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGC
* *
15893003 ATCCCGTCTCTCTGGTCGGCGTAGTGCCTGCCCGTCCGTCCGCCCGCTCGTTTCGTTGGTTGGCT
651 ATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCG-CCG-CCGCCCGCTCGTTTCGTCGGTTGGCT
* * *
15893068 TAGGCATACGAAGTTCATTCCTAGTCTAAGATTGGACCGGACTGAGGGTTGCGATAGCAGGATCG
714 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGATAGCAGGATCG
* * *
15893133 GCAGCACGCAGAGGGAGACACGGTCGATCCTCGACTTGTGCATCCTACCCCTCTGGCTGGCTGAG
779 GCAGCACGCAGAGGGGGAC-CGGTCGATCCTCGACTTGTGCATCCTGCCCCTCTGGCCGGCTGAG
* ** *
15893198 CGCCCGCACACTCATTTCATGATTTGACTTAGGCATATGGAGTTTATTCCCAGTCTAA
843 CGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAA
* * *
15893256 GCATACGGAGTCCATTCCCAGTCTAAGATC-GAACCGGACCGAGGGTTGTGGCAGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * *
15893320 GCTCGTGCATGTGTTGGTGCCACATTTTTCTTCG-TCGGGGCACCATCGTCGGAGCATCGCCGGA
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCTCGGGGCACCATCGTCGGAGCATCGCCAGA
* *
15893384 GAACCTGATCGGCGGCATTGAGGTTCCGGTGATCAGGGGGGCCGAGGGGGGTGTGCGCACATGAT
130 GAACCTGATCGACGGCATTGGGGTTCCGGTGATC-GGGGGGCC--GGGGGGTGTGCGCACATGAT
*
15893449 GT-CTGATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
192 GTGC-GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
*
15893513 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTA
256 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTT
* *
15893578 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTGGAGTGTTTAGCTGAATTTT
321 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * *
15893643 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTCCGA
386 TTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAA
* * *
15893708 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCCTGAAAAATAGAAAACAAAGTC
451 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC-GAGTC
* *
15893773 ATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACTAGCCATAAAAA
515 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * *
15893838 TGACATTGTCACGCAGAAATATGAAGATGCGCCTAAACCCACCTGCCACCCTATCAATCCACGGC
580 TGACATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGC
* * * *
15893903 TTACGTATCCCGTCTCTCTGGTCGGCGTAGTGCCTGCCCGTCCGCTCGCCCGCTCGTTTCGTTGG
645 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCG-CCGC-CGCCCGCTCGTTTCGTCGG
* * *
15893968 TTGGCTTAGGCATACGAAGTTCATTCCTAGTCTAAGATTGGACCGGACTGAGGGTTGCGATAGCA
708 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGATAGCA
* * * *
15894033 GGATTGGCAGCACGCAGAGGGAGACACGGTCGATCCTCGACTTGTGCATCCTACCCCTCTGGCTG
773 GGATCGGCAGCACGCAGAGGGGGAC-CGGTCGATCCTCGACTTGTGCATCCTGCCCCTCTGGCCG
* ** *
15894098 GCTGAGCGCCCGCACACTCATTTCATGATTTGACTTAGGCATATGGAGTTTATTCCCAGTCTAA
837 GCTGAGCGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAA
* * *
15894162 GCATACGGAGTCCATTCCCAGTCTAAGATC-GAACCGGACCGAGGGTTGTGGCAGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * *
15894226 GCTCGTGCATGTGTTGGTGCCACATTTTTCTTCG-TCGGGGCACCATCGTCGGAGCATCGCCGGA
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCTCGGGGCACCATCGTCGGAGCATCGCCAGA
* *
15894290 GAACCTGATCGGCGGCATTGAGGTTCCGGTGATCAGGGGGGCCGAGGAGGGTGTGCGCACATGAT
130 GAACCTGATCGACGGCATTGGGGTTCCGGTGATC-GGGGGGCCG-GG-GGGTGTGCGCACATGAT
*
15894355 GT-CTGATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
192 GTGC-GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
15894419 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTT
256 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTT
*
15894484 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTT
321 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* *
15894549 TTTGTGCATGCCAAAAAAAATACAAGGATTACATCTACCAAGTTTGGGGCCAAAACTCCTTCTAA
386 TTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAA
* * * *
15894614 AAAAAGTTT-AAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAAGGAGTTG
451 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
15894678 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
516 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * * *
15894743 GGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACGTACCACCCTATCGATCCATGGCT
581 GACATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCT
* * * * *
15894808 TGCACATCCCGTCTCTCTGGCCGGTGTAGCGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTAGGT
646 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCG-CCG-CCGCCCGCTCGTTTCGTCGGT
* * * * ** * *
15894873 TGGCTTGGGCATGCGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGTGACAGCAG
709 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGATAGCAG
* * *
15894938 GATCGGCAGCACGCAGAGGGGGACCTGG-CTGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCG
774 GATCGGCAGCACGCAGAGGGGGACC-GGTC-GATCCTCGACTTGTGCATCCTGCCCCTCTGGCCG
* * * * * * * *
15895002 GTTGAGTGCCCGCACGCTCGA-TTCGTGGGTTGAGTTAGGCAAACGGAGTTCACTCCTAGTCTAA
837 GCTGAGCGCCCGCACACTC-ATTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAA
* * * * ** *
15895066 GCATACAGAGTTCATTCCCAGACTAAGATCAGACCTGACCGAGGGTTACAACAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
** * * *
15895131 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGCT-GGGGCACCATCGTTGCAGCATCGTC-GAG
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCTCGGGGCACCATCGTCGGAGCATCGCCAGAG
* * * * * *
15895194 AACTTGACCGACGGCATTTGGGTTTCGGTGATCGGGGGGCCGGGGGGTGTGCGCACATGATATGA
131 AACCTGATCGACGGCATTGGGGTTCCGGTGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
15895259 GATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTTGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
15895324 CCACCTAAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATG
* * *
15895389 GGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTGTAGCTGAATTTTTTTTT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTG
* * * * *
15895454 TGCAAGCCAATAAAAATACAAGGATCACATCTACGAAGTTTGGGGCCAAAACTCTTTCCGAAAAA
390 TGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* ** * *
15895519 ATTTTAAAAAATCCCGAACTGTAAAAAGTTTTGAAAATCATGAAAAATAAAAAATGAGTCGTCTT
455 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
15895584 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATATAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGACA
** *
15895649 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACAGCTTGCG
585 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCG
* * *
15895714 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG-C-CCGCCCGCTCGTTTTGTCGGTTGGCTT
650 CATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCGCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * * *
15895777 TGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGTAGCAGGATCGA
715 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGATAGCAGGATCGG
* * * *
15895842 CAGCAGGGAGAGGGGGACCCGATCGATCCCCGACTT-TCGCAT-CTCGCCCCTCTGGCCGGCTGA
780 CAGCACGCAGAGGGGGA-CCGGTCGATCCTCGACTTGT-GCATCCT-GCCCCTCTGGCCGGCTGA
* ** * * *
15895905 GCGCCCGTAC-CTTGTTTCGTGGGTTGACTTAGTCATACAGAGTTTGTTCCCAGTCTAA
842 GCGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAA
* ** * ** * *
15895963 GCATACGAAGTTCATTCGTAGTCTAAGATCAGATCAAACTGAGGGTTGCGGCAACACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
15896028 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGC-AGGGGCACCATCG-CTTGAGCATCACCGGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCTCGGGGCACCATCGTC-GGAGCATCGCCAGA
* * * * *
15896091 GAAACTGATCGACGGCATTAGGTTTCTGGTGATCGGGGGGCCAGGGGGGTGTGCGTACATGATGT
130 GAACCTGATCGACGGCATTGGGGTTCCGGTGATCGGGGGGCC-GGGGGGTGTGCGCACATGATGT
* * *
15896156 GCGATAGGTGCTGGTACTTGGCCCTTGTATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
15896221 CACCCCTTTAAATAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAA
15896286 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * *
15896351 ATGCATGCCAACAAAAATACAAGGATCGCGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
389 GTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
** * *
15896416 AATTTTAAAAAATCCCGAACCAAAAAAAGTTTCAAAAATCGTGAAGAATAGAAAACGAGTCGTCT
454 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
15896481 TGCCATGAAACTTCTCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT-AG
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGA-
* * *
15896545 TATTGGCATGCAAAAATATGAAGATTTGCCTAAACCC
583 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
15896582 GGCTTGCGCA
Statistics
Matches: 3810, Mismatches: 346, Indels: 110
0.89 0.08 0.03
Matches are distributed among these distances:
867 2 0.00
868 88 0.02
871 2 0.00
875 1 0.00
877 105 0.03
878 187 0.05
879 130 0.03
881 1 0.00
882 3 0.00
884 2 0.00
886 1 0.00
887 1 0.00
892 69 0.02
893 2 0.00
896 1 0.00
897 141 0.04
898 392 0.10
899 200 0.05
900 505 0.13
901 83 0.02
902 219 0.06
903 116 0.03
904 627 0.16
905 97 0.03
906 835 0.22
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (900 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCTCGGGGCACCATCGTCGGAGCATCGCCAGAG
AACCTGATCGACGGCATTGGGGTTCCGGTGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGACAT
TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCGCCGCCCGCTCGTTTCGTCGGTTGGCTTA
GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGATAGCAGGATCGGC
AGCACGCAGAGGGGGACCGGTCGATCCTCGACTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGC
CCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAA
Found at i:15896683 original size:26 final size:26
Alignment explanation
Indices: 15896647--15896699 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15896637 CTTGACTTAG
15896647 GCATACAGAGTTCA-TTCCTAGTCTAA
1 GCATACAGAGTTCATTTCC-AGTCTAA
*
15896673 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTTCCAGTCTAA
15896699 G
1 G
15896700 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTTCCAGTCTAA
Found at i:15897267 original size:699 final size:700
Alignment explanation
Indices: 15895870--15897280 Score: 2057
Period size: 699 Copynumber: 2.0 Consensus size: 700
15895860 CCGATCGATC
* * * *
15895870 CCCGACTTTCGCATCTCGCCCCTCTGGCCGGCTGAGCGCCCGTACCTTGTTTCGTGGGTTGACTT
1 CCCGACTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCGCCCGCACCTCGTTTCGTGGCTTGACTT
* ** * * *
15895935 AGTCATACAGAGTTTGTTCCCAGTCTAAGCATACGAAGTTCATTCGTAGTCTAAGATCAGATCAA
66 AGGCATACAGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCGCAGTCTAAGATCAAACCAA
* * * * *
15896000 ACTGAGGGTTGCGGCAACACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCAGG
131 ACCGAGGGTTACGACAACACATGATGGGCTCGGGCATGTGCTGGTGACGCATTTTTCTTCGCAGG
* * **
15896065 GGCACCATCGCTTGAGCATCACCGGAGAAACTGATCGACGGCATTAGGTTTCTGGTGATCGGGGG
196 GGCACCATC-C-T--G----ACCGGAGAAACTGATCGACGGCATTAGGGTTCCGACGATCGGGGG
* * *
15896130 GCCAGGGGGGTGTGCGTACATGATGTGCGATAGGTGCTGGTACTTGGCCCTTGTATTGGCCCCCT
253 GCCAGGGGGGTGTGCGCACATGATGTGCGATAGGTACTGGTACTTGGCCCTTATATTGGCCCCCT
* * * *
15896195 ATCTCTCATCAAACCTCGAGAACTCACACCCCTTTAAATAGCATTTGAGATTTTACAGGTTTGCT
318 ATCCCTCATCAAACCTCAAGAACTCACACCCCTTTAAAGAGCATCTGAGATTTTACAGGTTTGCT
*
15896260 GCCAGTAGCCATTAAAATGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
383 GCCAGTAGCCATTAAAATGTCTGAAATGGGGACACTTTTCTCAAATGGTCACAAAATCTTGTACA
* * * *
15896325 CTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCGCGTCTACCAAG
448 CTCCAAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAG
15896390 TTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCAAAAAAAGTTTCAAAAAT
513 TTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCAAAAAAAGTTTCAAAAAT
* * * * * * *
15896455 CGTGAAGAATAGAAAACGAGTCGTCTTGCCATGAAACTTCTCGTGAAGGCTTAAGGGACCATTGT
578 CGTGAAAAAAAGAAAACAAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTCT
*
15896520 ATGAATTTACAAGCCATAAAAATAGTATTGGCATGCAAAAATATGAAGATTTGCCTAAA
643 ATGAATTTACAAGCCATAAAAATAGCATTGGCA-GCAAAAATATGAAGATTTGCCTAAA
*
15896579 CCCGGCTTGCGCATC-CGGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGCTTGAC
1 CCCGACTTGCGCATCTC-GCCCCTCTGGCCGGCTGAGCGCCCGCAC-CTCGTTTCGTGGCTTGAC
* *
15896643 TTAGGCATACAGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTTC-CAGTCTAAGATCAAAC
64 TTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGAAGTTCA-TTCGCAGTCTAAGATCAAAC
** * * * *
15896707 CGGACCGAGGGTTACGACAACACATGATGGGCTTGGGCATGTGTTGGTGATGCATTTTTCTTTGT
128 CAAACCGAGGGTTACGACAACACATGATGGGCTCGGGCATGTGCTGGTGACGCATTTTTCTTCG-
* * * *
15896772 C-GGGGCACCAT-C-G-CCGGAGAACCTGATCGGCGGTATTGGGGTTCCGACGATCGGGGGGGCC
192 CAGGGGCACCATCCTGACCGGAGAAACTGATCGACGGCATTAGGGTTCCGACGATC-GGGGGGCC
* *
15896833 AGGGGGGTGTGTGCACATGATGTGCGATTGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATC
256 AGGGGGGTGTGCGCACATGATGTGCGATAGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATC
15896898 CCTCATCAAACCTCAAGAACTCACACCCC-TTAAAGAGCATCTGAGATTTTACAGGTTTGCTGCC
321 CCTCATCAAACCTCAAGAACTCACACCCCTTTAAAGAGCATCTGAGATTTTACAGGTTTGCTGCC
* *
15896962 ATTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTCTCAAATGGTCACAAAATCTTGTACACTC
386 AGTAGCCATTAAAATGTCTGAAATGGGGACACTTTTCTCAAATGGTCACAAAATCTTGTACACTC
*
15897027 CAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAATACAAGGATCACGTCTACCAAGTT
451 CAAGTTTTTAGCTGAATTTTTTTATGCATGCC-AAAAAAAATACAAGGATCACGTCTACCAAGTT
* **
15897092 TGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTC-AAAATCG
515 TGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCAAAAAAAGTTTCAAAAATCG
15897156 TGAAAAAAAGAAAACAAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTCTAT
580 TGAAAAAAAGAAAACAAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTCTAT
*
15897221 GAATTTACAAGCCATAAAAATGGCATTGGCA-CATAGAAATATGAAGATTTGCCTAAA
645 GAATTTACAAGCCATAAAAATAGCATTGGCAGCA-A-AAATATGAAGATTTGCCTAAA
15897278 CCC
1 CCC
15897281 ACCTACCACC
Statistics
Matches: 633, Mismatches: 61, Indels: 26
0.88 0.08 0.04
Matches are distributed among these distances:
697 2 0.00
698 1 0.00
699 273 0.43
700 179 0.28
704 1 0.00
708 2 0.00
709 40 0.06
710 131 0.21
711 4 0.01
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.27
Consensus pattern (700 bp):
CCCGACTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCGCCCGCACCTCGTTTCGTGGCTTGACTT
AGGCATACAGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCGCAGTCTAAGATCAAACCAA
ACCGAGGGTTACGACAACACATGATGGGCTCGGGCATGTGCTGGTGACGCATTTTTCTTCGCAGG
GGCACCATCCTGACCGGAGAAACTGATCGACGGCATTAGGGTTCCGACGATCGGGGGGCCAGGGG
GGTGTGCGCACATGATGTGCGATAGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
TCAAACCTCAAGAACTCACACCCCTTTAAAGAGCATCTGAGATTTTACAGGTTTGCTGCCAGTAG
CCATTAAAATGTCTGAAATGGGGACACTTTTCTCAAATGGTCACAAAATCTTGTACACTCCAAGT
TTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
CAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCAAAAAAAGTTTCAAAAATCGTGAAAA
AAAGAAAACAAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTCTATGAATTT
ACAAGCCATAAAAATAGCATTGGCAGCAAAAATATGAAGATTTGCCTAAA
Found at i:15898321 original size:898 final size:884
Alignment explanation
Indices: 15896583--15900053 Score: 4640
Period size: 898 Copynumber: 4.0 Consensus size: 884
15896573 CCTAAACCCG
* *
15896583 GCTTGCGCATCCGGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGCTTGACTTAGG
1 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* * * **
15896648 CATACAGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTTCCAGTCTAAGATCAAACCGGACC
66 CATACAGAGTTCATTCCTAGTCCAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACC
* * ** * * *
15896713 GAGGGTTACGACAACACATGA-TGGGCTTGGGCATGTGTTGGTGAT-GCATTTTTCTTTGTCGGG
131 GAGGGTT-GGACAGCACAT-ACTGGGCTCAGGCATGTGCTGGTG-TCGCATTTTTCTTCGCCGGG
* *
15896776 GCACCATCGCCGGAGAACCTGATCGGCGGTATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGGT
193 GCACCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGT
* * * *
15896841 GTGTGCACATGATGTGCGATTGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
257 GTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* *
15896906 AACCTCAAGAACTCACA-CCCCTTAAAGAGCATCTGAGATTTTACAGGTTTGCTGCCATTAGCCA
322 AACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* *
15896970 TTAAAGTGTCTGAAATGGGGACACTTTTCTCAAATGGTCACAAAATCTTGTACACTCCAAGTTTT
387 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT-CGAGTTTT
15897035 TAGCTGAATTTTTTTGTGCATGCCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
451 TAGCTGAATTTTTTTGTGCATGCC-AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * *
15897100 AAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTC-AAAATCGTGAAAAAA
515 AAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAAT
* * * *
15897164 AGAAAACAAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTCTATGAATTTAC
580 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
** *
15897229 AAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATTTGCCTAAACCCACCTACCACCCTA
645 AAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * *
15897294 TAGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCACCCGCTCGT
710 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC-GCCCGCCCGCTCGT
* * * * *
15897359 TTTGTCGGTTGGCTTAGGCATACGAAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTG
774 TTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACC-GACCGAGGGTTG
* * *
15897424 CGGCAGTAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCTCA
838 AGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCTCA
* * *
15897471 GCTTGCCCATCCCGCCCCTCTGACCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
1 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
*
15897536 CATACAGAGTTCATTCCTAGTCCAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACC
66 CATACAGAGTTCATTCCTAGTCCAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACC
* * ** * *
15897601 GAGGGTTGTGATAGCACATGCTGGGCTTGGGCATGTGCTGGTGTCTCATTTTTCTTCACCGGGGC
131 GAGGGTTG-GACAGCACATACTGGGCTCAGGCATGTGCTGGTGTCGCATTTTTCTTCGCCGGGGC
* * * *
15897666 ACCATCTCTGGAGCATCACAGGAGAACCTGATCGGTGGCATTGGGGTTCCGGCAATCGGGGGGGC
195 ACCA--TC----G---C-C-GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGC
* ** *
15897731 CGGGGGGGTGTGCGCACATGATGTACGATGGGTGTTGGTACTTGTTCTTTATATTGGCCCCCTAT
249 C-GGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * *
15897796 CCCTCATCAAACCTCAAGAACTCAAAGCCCCTTCAAGAGCATTTGAGATTTTACAGGTTTGCTGC
313 CCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * * *
15897861 AAGTAGCCATTAAAGTGTCTGAAATGGGGAAACTTTTTTCAAATGGTCAC-AAATCCTATACACT
378 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
*
15897925 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
443 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT
* * *
15897990 GCGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCAT
508 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCAT
*
15898055 GAAAAATAGAAAACGAGTCGTCCTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
573 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* * * *
15898120 AATTTACAGGCCATAAAAATGGTATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTAC
638 AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* *
15898185 CACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGACCGGCGTAGTGCCCGGCCGCCCGCC
703 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC-GCCGCCCGCC
* *
15898250 CGCTCGTTTCGTCGGTTGGTTTAGGCATATGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCG
767 CGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACC-GACCG
* * * *
15898315 AGGGTTGTGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGACCGA-CCCCG
831 AGGGTTGAGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCTCA
* *
15898368 GCTTGCGCATCTCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
1 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* * * * *
15898433 CATAC-GAACTTGATTGCC-AGTCCAAGCATAC-AGAGTTCATTCCTAGTCTAAGATTGGATCGG
66 CATACAG-AGTTCATT-CCTAGTCCAAGCATACGA-AGTTCATTCCCAGTCTAAGATCGGACCGG
* *
15898495 ACCGAGGGTTGCGGCCA-CACATACTGGGCTCAGGCATGTGCTGGTGTCGCATTTTTCTTCGTCG
128 ACCGAGGGTT--GGACAGCACATACTGGGCTCAGGCATGTGCTGGTGTCGCATTTTTCTTCGCCG
* *
15898559 GGGCACCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCTGATGATCGGGGGGGCCGGGGGG
191 GGGCACCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGG
* * *
15898624 TGTACGCACATGATGTTCTATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
256 TGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* *
15898689 AAACCTCGAGAACTCACACCCCCTTAAAGAGCAATTGAGATTTTACAGGTTTGCTGCCAGTAGCC
321 AAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
*
15898754 ATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACCTCGAGTTT
386 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA-CTCGAGTTT
* * * * *
15898819 TTAGCTGATTTTTTTTGTGCATACCAACAAAAATACAAGGATCACATCT----AGTTTGGGACCA
450 TTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * *
15898880 AAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAGAAT
515 AAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAAT
* * * *
15898945 AGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAATGGTCCATTGCATGAATTTAC
580 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* *
15899010 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAGCACCCTA
645 AAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * * **
15899075 TCGATCCATGGCTTGTGCATCCCGTCTATCAGGCCGGCGTAGTG--C-CCGCTAGCCCGCTCGTT
710 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCCGCCCGCTCGTT
* * *
15899137 TCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGAATCGAACCGAGGGTTAA
775 TCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCG-ACCGAGGGTTGA
* * *
15899202 GGCAGCAGGATCGACAGCATGCAGAGGGGGACCCGGCCGATCCTCA
839 GGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCTCA
* * * * *
15899248 GCTTACGCATACTGCCCCTCTGGCCGGCTGAGCGCCTGCACGCTCATTTCGTGGGTTGAC-T---
1 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* *
15899309 --T--AG-G--CA----TA---C--G-----G-AGTTCATTCCCAGTCTAAGATTGGACCGAACC
66 CATACAGAGTTCATTCCTAGTCCAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACC
* *
15899352 GAGGGTTGCAGCAGCACATACTTGGCTCAGGCATGTGCTGGTG-CTGCATTTTTC-T--CC---G
131 GAGGGTTGGA-CAGCACATACTGGGCTCAGGCATGTGCTGGTGTC-GCATTTTTCTTCGCCGGGG
* * * *
15899410 -----TCACCGGAGAACCTGACCGGCGGCATAGGGGTTCCGATGATCGGGGGGGCC-GGTGGTGT
194 CACCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGT
15899469 GCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
259 GCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* *
15899534 CCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
324 CCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
**
15899599 AAAGTGTCTGAAATGGGGACGTTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
389 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TCGAGTTTTTA
15899664 GCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
453 GCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * **
15899729 CTCCATCCGAAAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGA
518 CTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGA
15899794 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
583 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
*
15899859 CCATAAAAATGGCATTGGCACGCAGAAATATGAGGATGTGCCTAAACCCACCTACCACCCTATCG
648 CCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * * ** * * *
15899924 ATACACAGCTTGCGCATCCCG----TC-AG-CGTAGT-GCTCGCCTGCACCCCCGCCCGCTTGTT
713 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG-T-GCCCGC-CGCCCGCCCGCTCGTT
* * * * * *
15899982 TCGTTGGTTGGCTTAGGCATACGGAGTTCAATCCAAGTCTAAGATCAGACCAGACCAAGGGTT-A
775 TCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACC-GACCGAGGGTTGA
15900046 TGGCAGCA
839 -GGCAGCA
15900054 CATGCTGGGC
Statistics
Matches: 2310, Mismatches: 228, Indels: 133
0.86 0.09 0.05
Matches are distributed among these distances:
839 1 0.00
840 5 0.00
841 3 0.00
842 236 0.10
843 48 0.02
844 2 0.00
845 72 0.03
846 212 0.09
848 1 0.00
851 1 0.00
852 1 0.00
853 4 0.00
854 73 0.03
860 1 0.00
862 1 0.00
865 1 0.00
869 1 0.00
873 1 0.00
874 1 0.00
878 1 0.00
879 109 0.05
880 56 0.02
881 1 0.00
883 230 0.10
885 163 0.07
886 50 0.02
887 57 0.02
888 176 0.08
890 2 0.00
891 1 0.00
894 1 0.00
895 2 0.00
896 2 0.00
897 256 0.11
898 318 0.14
899 138 0.06
900 82 0.04
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (884 bp):
GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
CATACAGAGTTCATTCCTAGTCCAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACC
GAGGGTTGGACAGCACATACTGGGCTCAGGCATGTGCTGGTGTCGCATTTTTCTTCGCCGGGGCA
CCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGC
GCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
TCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTCGAGTTTTTAGCT
GAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
CTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
TAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCCGCCCGCTCGTTTCGTCG
GTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGACCGAGGGTTGAGGCAGCA
GGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCTCA
Found at i:15901296 original size:903 final size:902
Alignment explanation
Indices: 15899998--15902449 Score: 3971
Period size: 903 Copynumber: 2.7 Consensus size: 902
15899988 GTTGGCTTAG
* * *
15899998 GCATACGGAGTTCAATCCAAGTCTAAGATCAGACCAGACCAAGGGTTATGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTATGGCAGCACATGCTGGG
* *
15900063 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
**
15900128 ACCTGACCGGCGGCATTGGGGTTCCGGTGAT-GAGGGGGCCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGC
15900192 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * *
15900257 CCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAACTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCTAGTAGCCATTAAAGTGTCTGAAATG
**
15900322 GGGACGTTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTGT
326 GGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTGT
15900387 GCATGCCAACAAAAATACAAGGATCACGTCTAATTTGTTTGGGGCAAAAACTCTTTCCGAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTAATTTGTTTGGGGCAAAAACTCTTTCCGAAAAAA
15900452 TTTTAAAAAATCCCAAATCGTAAAAAGTTTCAGAAATCGTGAAAAATAGAAAACAAGTTGTCTTG
456 TTTTAAAAAATCCCAAATCGTAAAAAGTTTCAGAAATCGTGAAAAATAGAAAACAAGTTGTCTTG
15900517 CCATGAAACTTCACGTGAAGCCTTAAGGGACCATTGTATGAATTTATAAGCCATAAAAATGGCAT
521 CCATGAAACTTCACGTGAAGCCTTAAGGGACCATTGTATGAATTTATAAGCCATAAAAATGGCAT
*
15900582 TGGCACGTAGAAATACGAAGACATGGATAAACCCACCTACCACCCTATTGATCCACGGCTTGTGC
586 TGGCACGTAGAAATACGAAGACATGGATAAACCCACCTACCACCCTATCGATCCACGGCTTGTGC
15900647 ATCCCGTCTCTCTGGCCGACGGAATGCCTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTGGGCT
651 ATCCCGTCTCTCTGGCCGACGGAATGCCTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTGGGCT
*
15900712 TAGGTATACAGAGTTCATTCCCATTCTAAGATCGGACCGGATTGGGAGTTGCAACAGTAGATCGG
716 TAGGTATACAGAGTTCATTCCCATTCTAAGATCGGACCAGATTGGGAGTTGCAACAGTAGATCGG
*
15900777 CAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTCGTGCATCCCGCCCCTCTGGCCGGCTGAAT
781 CAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTCGTGCATCCCGCCCCTCTGGCCGGCTGAAC
15900842 GCCCACACGCTCATTTCGTGGGTTAACTTAGGCATACATAGTTCATTCCCAGTCTAA
846 GCCCACACGCTCATTTCGTGGGTTAACTTAGGCATACATAGTTCATTCCCAGTCTAA
* * * *
15900899 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGACAGCACAT-CTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTATGGCAGCACATGCTGGG
** * ** * *
15900963 CTCAAGCATGTGCTGGTGCCACATTTTTCTTCCCCGGTGCACCATCGCCTGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
** ** * *
15901028 ACCTGACCAACGGCATTACGGTTCCGACGATCGGGGGGGGCCGGAGGGGTATGCGCACATGATGT
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-GAGGGGGCCGG-GGGGTGTGCGCACATGATGT
* * * *
15901093 GCGATGGGTGCTAGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCGAACCTCGAGAACTCC
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
15901158 CACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTTCTACTAGTAGCCATTAAAGTGTCTGGAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCTAGTAGCCATTAAAGTGTCTGAAA
*
15901223 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTT
324 TGGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTT
15901288 GTGCATGCCAACAAAAATACAAGGATCACGTCTAATTTGTTTGGGGCAAAAACTCTTTCCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTAATTTGTTTGGGGCAAAAACTCTTTCCGAAAA
15901353 AATTTTAAAAAATCCCAAATCGTAAAAAGTTTCAGAAATCGTGAAAAATAGAAAACAAGTTGTCT
454 AATTTTAAAAAATCCCAAATCGTAAAAAGTTTCAGAAATCGTGAAAAATAGAAAACAAGTTGTCT
15901418 TGCCATGAAACTTCACGTGAAGCCTTAAGGGACCATTGTATGAATTTATAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGCCTTAAGGGACCATTGTATGAATTTATAAGCCATAAAAATGGC
15901483 ATTGGCACGTAGAAATACGAAGACATGGATAAACCCACCTACCACCCTATCGATCCACGGCTTGT
584 ATTGGCACGTAGAAATACGAAGACATGGATAAACCCACCTACCACCCTATCGATCCACGGCTTGT
15901548 GCATCCCGTCTCTCTGGCCGACGGAATGCCTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTGGG
649 GCATCCCGTCTCTCTGGCCGACGGAATGCCTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTGGG
15901613 CTTAGGTATACAGAGTTCATTCCCATTCTAAGATCGGACCAGATTGGGAGTTGCAACAGTAGATC
714 CTTAGGTATACAGAGTTCATTCCCATTCTAAGATCGGACCAGATTGGGAGTTGCAACAGTAGATC
15901678 GGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTCGTGCATCCCGCCCCTCTGGCCGGCTGA
779 GGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTCGTGCATCCCGCCCCTCTGGCCGGCTGA
* *
15901743 ACGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACATAGTTCATTCCCAGTCTAA
844 ACGCCCACACGCTCATTTCGTGGGTTAACTTAGGCATACATAGTTCATTCCCAGTCTAA
* * * *
15901802 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGATTTTGGCAGCACATGTTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTATGGCAGCACATGCT-GG
* *
15901867 G-TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATCGCCGGAGCATCGTCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAG
* * *
15901931 AACCTGACCGGCGGCATTGGGGTTCTGACGATCGAGGGGGCCGGGGGGTGTGCACAGATGATGTG
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTG
** * *
15901996 CGATGGGTGCTGGTACTTGGCCCTTATATTGGTGCCCTATCCCTCTTCAAACCTCAAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
15902061 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTAATGCTAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCTAGTAGCCATTAAAGTGTCTGAAAT
* * *
15902126 TGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTG
325 GGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTG
* **** *
15902191 TGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAA--C--TCC------
390 TGCATGCCAACAAAAATACAAGGATCACGTCTAATTTGTTTGGGGCAAAAACTCTTTCCGAAAAA
* * * * * * * **
15902246 ATTTGAAAAAATCCCGAACCTTAAAAAGTTTC-GTAAGTCATAAAAAATAGAAAACGAA-TCATC
455 ATTTTAAAAAATCCCAAATCGTAAAAAGTTTCAG-AAATCGTGAAAAATAGAAAAC-AAGTTGTC
* *
15902309 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGCCTTAAGGGACCATTGTATGAATTTATAAGCCATAAAAATGG
* * * ** ** *
15902374 CATTGGCACGCAGAAATATGAGGATGTGCCTAAACCCACCTACCACCCTATCGATACACGGCTTG
583 CATTGGCACGTAGAAATACGAAGACATGGATAAACCCACCTACCACCCTATCGATCCACGGCTTG
*
15902439 CGCATCCCGTC
648 TGCATCCCGTC
15902450 GGCGTAGTGC
Statistics
Matches: 1434, Mismatches: 110, Indels: 23
0.92 0.07 0.01
Matches are distributed among these distances:
891 1 0.00
892 179 0.12
893 2 0.00
898 3 0.00
900 87 0.06
901 52 0.04
902 251 0.18
903 773 0.54
904 83 0.06
905 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (902 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTATGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCTAGTAGCCATTAAAGTGTCTGAAATG
GGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTAATTTGTTTGGGGCAAAAACTCTTTCCGAAAAAA
TTTTAAAAAATCCCAAATCGTAAAAAGTTTCAGAAATCGTGAAAAATAGAAAACAAGTTGTCTTG
CCATGAAACTTCACGTGAAGCCTTAAGGGACCATTGTATGAATTTATAAGCCATAAAAATGGCAT
TGGCACGTAGAAATACGAAGACATGGATAAACCCACCTACCACCCTATCGATCCACGGCTTGTGC
ATCCCGTCTCTCTGGCCGACGGAATGCCTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTGGGCT
TAGGTATACAGAGTTCATTCCCATTCTAAGATCGGACCAGATTGGGAGTTGCAACAGTAGATCGG
CAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTCGTGCATCCCGCCCCTCTGGCCGGCTGAAC
GCCCACACGCTCATTTCGTGGGTTAACTTAGGCATACATAGTTCATTCCCAGTCTAA
Found at i:15905570 original size:718 final size:714
Alignment explanation
Indices: 15901802--15907113 Score: 6943
Period size: 718 Copynumber: 7.5 Consensus size: 714
15901792 CCCAGTCTAA
* * * * *
15901802 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAGGATTTTGGCAGCACATGTTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGG-GTTTAGCAGCACATGCT-GG
* *
15901867 G-TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATCGCCGGAGCATCGTCGGAG
64 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAG
* ** * * *
15901931 AACCTGACCGGCGGCATTGGGGTTCTGACGATCGAGGGGGCCGGGGGGTGTGCACAGATGATGTG
129 AACCTGACCGGCGGCATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
** * *
15901996 CGATGGGTGCTGGTACTTGGCCCTTATATTGGTGCCCTATCCCTCTTCAAACCTCAAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
** *
15902061 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTAATGCTAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
15902126 TGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
*
15902191 TGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCC-AAAA--C-TCC------
389 TGCATGCCAATAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAA
* * ** * * * * * * *
15902246 ATTTGAAAAAATCCCGAACCTTAAAAAGTTTCGTAAGTCATAAAAAATAGAAAACGAATCATCTT
454 ATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
15902311 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
15902376 TTGGCACGCAGAAATATGAGGATGTGCCTAAACCCACCTACCACCCTATCGATACACGGCTTGCG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
15902441 CATCCCG----TC-GG-C---GTAGTGCTCGCCTGCACGCCCGCCCGCTTGTTTCTTTGGTTGGC
649 CATCCCGTCTCTCTGGCCGGTGTAGTGC-C-CC-GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
15902497 TTAG
711 TTAG
* * * * *
15902501 GCATACGGAGTTCAATCCAAGTCTAAGATCAGACCAGACCAAGGGTTATGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTT-TAGCAGCACATGCTGGG
** * * **
15902566 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACTATCGTCGGAGCATCACCGGAGA
65 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* ** *
15902631 ACCTGACCGGCGGCATTGGGGTTCCGGTGAT-GAGGGGGCTAGGGGGTGTGCGCACTTGATGTGC
130 ACCTGACCGGCGGCATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
15902695 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTCTCCCTCATCAAATCTTGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
15902760 CCCCCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTAAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
15902825 GGGACACTTTTTTCAAATGGTCACAAAATCTTTTACACTTCGAGTTTTTAGCTGAATTCTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
15902890 GCATGCCAA-AGAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
390 GCATGCCAATA-AAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAA
* * * *
15902954 ATTTTAAAAAATCCCGAACCGTAAAAAGATTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * * *
15903019 GGCATGAAACCTCACGAGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCTTAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
15903084 TTGGCGTGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTGCG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * *
15903149 CATCCCGTCTCTCTGGCCGGCGTAGT-----GCTCGCCTGCCCGTTCATTTTGTCGGTTGGCTTA
649 CATCCCGTCTCTCTGGCCGGTGTAGTGCCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
15903209 G
714 G
* *
15903210 GCATATGGAGTTCATTCCCAGTCTAAGAT-----TGGA-C----------CAG-AC---C---G-
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTTAGCAGCACATGCTGGGC
* * * **
15903251 -AGGG--T-TGCTGGTGCCACATTTTTCTTCGTTGGGGCACCATTGCCGGAGCATCACCGGAGAA
66 TCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAA
* *
15903312 CCTGACCGGCGACACTGGGGTTCCGGTGATCGGGGGGGCCGGGCGGGGTGTGCGCACATGATGTG
131 CCTGACCGGCGGCATTGGGGTTCCGGTGATCGGGGGGGCC-GG-GGGGTGTGCGCACATGATGTG
* *
15903377 TGATGGGTGCTGGTACTTGGCCCGTATATTGG-CCCCTATCCCTCATCAAACCAT-GAGAACTCA
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCGAGAACTCA
* ** *
15903440 CACCCACTTAAAGAGCAGATGAGATTTTACGGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
15903505 TGGGGACACTTTTTTTAAATGGTCACAAAATCTTGTATACTTCGAGTTTTTCGCTGATTTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
15903570 GTGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AATATGCCTTCCAAAA
388 GTGCATGCCAATAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAAT-CCTTCCAAAA
* * * * * *
15903634 AAATTTTAAAAAATCCCGAACCACAAAAAGTTTCGAAAATCATAAAAAATAGAAAACGAGTCATC
452 AAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
15903699 TTGCCATGCAACTTCACGTGAAGGCTTAAGGGTCCATTGTATGAATTTAAAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
15903764 CATTGGCTTGCAGAAATATGAAGATGTGGCTAAACCCACCTATCACCCTATCGATCCATGGCTTG
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
15903829 CGCATCTCGTCTCTCTGGCAGGCGTAGTG-CCCGCCCGCCCGCCTGCTCGTTTCGTTGATTGGCT
647 CGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
15903893 TAG
712 TAG
* * * * *
15903896 TCATACGAAGTCCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTTCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTT-AGCAGCACATGCTGGG
* * * * *
15903961 CTCGGGCATGTGCCGGTGCCATATTTTTCTTCATCGGGGCACCATCCCCGGAGCGTCGTCGGAGA
65 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * ** **
15904026 ACCTGACCGGTGGCTTTGCAGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
130 ACCTGACCGGCGGCATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
15904091 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCAACAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
15904156 CCCCCTGAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
15904221 GGGACACTTTTTTCAAAAGGTCACAAAATGTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* ** * *
15904286 GCATGCCAATAAAAATACAAGAATCATGTCTACCAAGTTTGGGGCCAAAAAACCTTCAAAAAAAA
390 GCATGCCAATAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAA
* * * *
15904351 TTTTAAAAAATCTTGAACTGCAAAAAGTTTTGAAAATCGTGAAAATTAGAAAACGAGTCATCTTG
455 TTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
*
15904416 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATCAATTTACAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
15904481 TGGCACGTAGAAATATGAAGATGT-CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
585 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
*
15904545 ATCCCGTCTCTCTGGCCGGTGTTGTGACCGCCCGCCCGTCGCCCGCTCGCCCGCTCGTTTCGTCG
650 ATCCCGTCTCTCTGGCCGGTGTAGTG--C-CCCG-CC--CG--C-C-CGCCCGCTCGTTTCGTCG
15904610 GTTGGCTTAG
705 GTTGGCTTAG
* * * *
15904620 GCATACGGAGTTCATTCCAAGTCCAAGATCAGACTGGACCAAGGG-TTACGACAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTTA-G-CAGCACATGCTGG
*
15904684 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG-CTGGGGCACCATCGCCGGAGCATCGTCGGA
64 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTC-GGGGCACCATCGCCGGAGCATCGTCGGA
* * ** *
15904748 GAACCTGACCGGCAGCATTAGGGTTCCAATGATC-GGAGGGCCAGGGGGGTGTGCGCACATGATG
128 GAACCTGACCGGCGGCATTGGGGTTCCGGTGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATG
* *
15904812 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGCCCCCCTATCCCTCATCAAACCTGGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * *
15904877 ACACCCCCTTAAGGACCATTTGAGATTTTACAGGTTTGCTACCAGTAGCAATTAAAGTGTCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
15904942 TTAGGGACACTTTTTTCAAATGGTCATAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
15905007 TGTGCATGGCAACAAAAATGCAAGGATCACATCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAA
387 TGTGCATGCCAATAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAA
* *
15905072 AAATTTTAAAAAACTCCTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACGAGTCGT
452 AAATTTTAAAAAA-TCCTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT
*
15905137 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
15905202 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAA-CCACCTACCACCCTATCGCTCCAACGACT
581 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC-ACGGCT
* * * * * *
15905266 TGCGCATCCCGTCTCTTTGGCCGGCGTAAGTGCCCCTGCTCGTCCGCCCGCTCGTTTCGTCGATC
645 TGCGCATCCCGTCTCTCTGGCCGGTGT-AGTGCCCC-GCCCGCCCGCCCGCTCGTTTCGTCGGTT
**
15905331 CACTTAG
708 GGCTTAG
* *
15905338 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTAGCAGCACGTGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTT-TAGCAGCACATGCTGGG
* * * *
15905403 CTCGAGCATGTGCTGGTGCCACTTTTTTCTTCATCGGGGCACCATCGCTGGAGCATCGTCGGAGA
65 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * *
15905468 ACCTGACCGGCGGCATTCGGGTTCCGGTGATCGGGGGGGCCGGGTGGTGTGCTCACATGATGTGT
130 ACCTGACCGGCGGCATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
15905533 GATGGGTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCCCA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
15905598 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGAT-TGAAAT
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG-TCTGAAAT
*
15905662 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
15905727 TGCATGCAAATAAAAATACAAGGATCCCATCTACCAAGTTTGGGG-CAAAAACTCCTTTCGAAAA
389 TGCATGCCAATAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAA-TCCTTCCAAAAA
* * ** *
15905791 AATTTTAAAAAATCCCGAACCGCAAAAAATTTCAAAAATCGTGAAAAATAGAAAACGGGTCGTCT
453 AATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * * *
15905856 TGCGATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTATAAGCCGTAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** * * * *
15905921 ATTGGCACACAGAAAATATGAAGATGTACCTAAACCAACCTACCACCCTATCGATCAACAGCTTG
583 ATTGGCATGCAG-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
** * * *
15905986 CGCATCCCGTCTCTCTAACCGGTGTACTGCCCGCCCGCCCGCCCTCCCGCTCGTTTTGTCGGTTG
647 CGCATCCCGTCTCTCTGGCCGGTGTAGTG--C-CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
15906051 GCTTAG
709 GCTTAG
* * **
15906057 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTT-TAGCAGCACATGCTGGG
** * * * *
15906122 CTCAAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCACCACTGGAGCATCGTCGGAGA
65 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * *
15906187 ACCTGACCGGCGGGTATTGGGGTTCCAGTGATCGGGGGGGCCGGGGGGTGTGCTCACATGATGTG
130 ACCTGACCGGC-GGCATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* ** * * * *
15906252 CGATGGGTGCTGGTAGTTGGCCCTTATATTTTCCCGCTAACCCTAATCAAACCTCGAGAACTCCC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
15906317 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGACTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
15906382 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-ATGGTTTTAGCTGATTTTTTTT
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA-GTTTTTAGCTGAATTTTTTT
* * * * * * * **
15906446 ATGCATACCAAAAAAAATTCAAGGATCACCTCTACCCAGTTTGGGACCAAAAATCCTTCTGAAAA
388 GTGCATGCCAATAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAA
* * *
15906511 AATTTTAAAAAAT-CTCGAACCACAAAAATTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTC
453 AATTTTAAAAAATCCT-GAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
15906575 TTGGCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
15906640 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTTCCACCCTATCGATCCACGGCTTG
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
15906705 CGCAT--C--C-C-AT---CGGTGTAGTG-CTCGCCCGCCCGCCCGCTTGTTT-GATCGGTTGGC
647 CGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCCGCCCGCCCGCCCGCTCGTTTCG-TCGGTTGGC
15906759 TTAG
711 TTAG
* * * * *
15906763 GCATACGGAGTTCATTCCCAGCCTAAGATCAAACTGGACCGAGGG-TTACGACAGCACATACTGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTTA-G-CAGCACATGCTGG
* * ** * * * * *
15906827 GCTAGGGCATGTGCTGGTGCCGCATTTTTCTTCGTTAGGCCACGATCACCGCAGCATCGCCGGAG
64 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAG
* * * * * *
15906892 AACCTGACCGACGGCGTTGGGGTTCCTGCGATCGGAGGGGCC-GGGGGTGTGCGAACATGATGTG
129 AACCTGACCGGCGGCATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * * *
15906956 CGATGGGTGCTGGTACCTGGCCCTTATATTGGCCCCCTATCCCTCATCAAATCTCGACAACTCGC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
15907021 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
15907086 GGGGACACTTTTTTCAAATGGTCACAAA
324 GGGGACACTTTTTTCAAATGGTCACAAA
15907114 CAAAAATACA
Statistics
Matches: 4061, Mismatches: 449, Indels: 201
0.86 0.10 0.04
Matches are distributed among these distances:
680 78 0.02
681 11 0.00
682 402 0.10
683 55 0.01
685 1 0.00
686 52 0.01
688 1 0.00
691 5 0.00
692 4 0.00
697 1 0.00
698 253 0.06
699 142 0.03
701 1 0.00
702 3 0.00
703 3 0.00
704 169 0.04
705 28 0.01
706 149 0.04
707 1 0.00
708 182 0.04
709 53 0.01
710 10 0.00
712 5 0.00
713 114 0.03
714 344 0.08
715 83 0.02
717 135 0.03
718 473 0.12
719 244 0.06
720 410 0.10
721 6 0.00
722 3 0.00
723 12 0.00
724 432 0.11
725 157 0.04
726 36 0.01
727 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (714 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTTAGCAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAA
CCTGACCGGCGGCATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAATAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAAT
TTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGGTGTAGTGCCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
Found at i:15907625 original size:26 final size:26
Alignment explanation
Indices: 15907596--15907648 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15907586 GTTGACTTAG
*
15907596 GCATATGGAGTTCATTC-CTAGTCTAA
1 GCATATAGAGTTCATTCTC-AGTCTAA
15907622 GCATATAGAGTTCATTCTCAGTCTAA
1 GCATATAGAGTTCATTCTCAGTCTAA
15907648 G
1 G
15907649 ATCAGACTCG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (26 bp):
GCATATAGAGTTCATTCTCAGTCTAA
Found at i:15908404 original size:17 final size:17
Alignment explanation
Indices: 15908384--15908432 Score: 50
Period size: 15 Copynumber: 3.0 Consensus size: 17
15908374 TTGGCTCGAC
15908384 CATGTGCTGGTGCCGCA
1 CATGTGCTGGTGCCGCA
**
15908401 CA--TGCT-GTGCTCGGG
1 CATGTGCTGGTGC-CGCA
15908416 CATGTGCTGGTGCCGCA
1 CATGTGCTGGTGCCGCA
15908433 TTTTTCTTTG
Statistics
Matches: 24, Mismatches: 4, Indels: 8
0.67 0.11 0.22
Matches are distributed among these distances:
14 4 0.17
15 8 0.33
17 8 0.33
18 4 0.17
ACGTcount: A:0.10, C:0.29, G:0.37, T:0.24
Consensus pattern (17 bp):
CATGTGCTGGTGCCGCA
Found at i:15908447 original size:32 final size:32
Alignment explanation
Indices: 15908366--15908432 Score: 100
Period size: 32 Copynumber: 2.1 Consensus size: 32
15908356 GGTTGCGGCA
**
15908366 GCACATGCT-TGGCTCGACCATGTGCTGGTGCC
1 GCACATGCTGT-GCTCGGGCATGTGCTGGTGCC
15908398 GCACATGCTGTGCTCGGGCATGTGCTGGTGCC
1 GCACATGCTGTGCTCGGGCATGTGCTGGTGCC
15908430 GCA
1 GCA
15908433 TTTTTCTTTG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
32 31 0.97
33 1 0.03
ACGTcount: A:0.12, C:0.30, G:0.34, T:0.24
Consensus pattern (32 bp):
GCACATGCTGTGCTCGGGCATGTGCTGGTGCC
Found at i:15910854 original size:27 final size:26
Alignment explanation
Indices: 15910797--15910855 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
15910787 CTCCTTCTAA
* ***
15910797 AAAAAGTTTAAAAAATCCTGAACCGT
1 AAAAAGTTTAAAAAATCATGAAAAAT
*
15910823 AAAAAGTTTTAAAAATCATGAAAAAT
1 AAAAAGTTTAAAAAATCATGAAAAAT
15910849 AGAAAAG
1 A-AAAAG
15910856 GAGTTGTCTT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 22 0.81
27 5 0.19
ACGTcount: A:0.58, C:0.08, G:0.12, T:0.22
Consensus pattern (26 bp):
AAAAAGTTTAAAAAATCATGAAAAAT
Found at i:15912592 original size:902 final size:896
Alignment explanation
Indices: 15910727--15913671 Score: 4241
Period size: 898 Copynumber: 3.3 Consensus size: 896
15910717 NNNNNNNNNN
* *
15910727 TTTTTTTGTGCATGCCAAAAAAAATTACAAGGATTACATCTACCAAGTTTGGGGCCAAAACTCCT
1 TTTTTTTGTGCATGCCAACAAAAA-TACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCT
** * * * * *
15910792 TCTAAAAAAAGTTTAAAAAATCCTGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAAGG
65 TCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
*
15910857 AGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
130 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* * * * * * *
15910922 AAAATGACATTGTCACGCAGAAATATGAAGATGCGCCTAAACCCACCTGCCACCCTATCAATCCA
195 AAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * *
15910987 CGGCTTACGTATCCCGTCTCTCTGGTCGGCGTAGTGCCTGCCCGTCCGCTCGCCCGCTCGTTTCG
260 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG-GCCTGCCCGCCCGCCCGCCCGCTCGTTTCG
* * * ** * *
15911052 TTGGTTGGCTTAGGCATACGAAGTTCATTCCTAGTCTAAGATTGGACCGGACTGAGGGTTGCGAT
324 TAGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGAT
* * **
15911117 AGCAGGATCGGCAGCACGCAGAGGGAGACACGGTCGATCCTCGACTTGCGCATCCTACCCCTCTG
389 AGCAGGATCGGCAGCACGCAGAGGGGGAC-CGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTG
* * ** * *
15911182 GCTGGCTGAGCGCCCGCCACACTC-ATTTCATGATTTGACTTAGGCATATGGAGTTTATTCCCAG
453 GCCGGCTGAGCGCCCG-CAC-CTCGA-TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * *
15911246 TCTAAGCATACGGAGTCCATTCCCAGTCTAAGATC-GAACCGGACCGAGGGTTGTGGCAGCACAT
515 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGCGGCAGCACAT
* * * * * *
15911310 GCTAGGCTCGTGCATGTGTTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGC
579 ACTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTC-GAGCATCGC
* *
15911375 CAGAGAACCTGATCGGCGGCATTGAGGTTCCGGTGATCAGGGGGGCCGAGGGGGGTGTGCGCACA
643 CAGAGAACCTGATCGACGGCATTG-GGTTTCGGTGATC-GGGGGGCC-AGGGGGGTGTGCGCACA
** *
15911440 TGATGTCTGATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
705 TGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
15911505 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
770 AACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* *
15911570 CTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTGGAGTGTTTAGCTGAA
834 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT-TTTAGCTGAA
* *
15911634 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTT
1 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTT
* *
15911699 CCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCCTGAAAAATAGAAAACAA
66 CCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC-G
*
15911764 AGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
130 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
*
15911829 AAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACGTACCACCCTATCGATCCA
195 AAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * *
15911894 TGGCTTGCACATCCCGTCTCTCTGGCCGGTGTAGCGCCCGCCCGCCCGCCCGCCCGCTCGTTTCG
260 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG-GCCTGCCCGCCCGCCCGCCCGCTCGTTTCG
* * ** *
15911959 TAGGTTGGCTTGGGCATGCGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGTGAC
324 TAGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGAT
15912024 AGCAGGATCGGCAGCACGCAGAGGGGGACCTGG-CTGATCCCCGACTTGCGCATCCCGCCCCTCT
389 AGCAGGATCGGCAGCACGCAGAGGGGGACC-GGTC-GATCCCCGACTTGCGCATCCCGCCCCTCT
* * * * * *
15912088 GGCCGGTTGAGTGCCCGCACGCTCGATTCGTGGGTTGAGTTAGGCAAACGGAGTTCACTCCTAGT
452 GGCCGGCTGAGCGCCCGCAC-CTCGATTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * * * **
15912153 CTAAGCATATGGAGTTCATTCCCAGACTAAGATCAGACCTGACCGAGGGTTACAACAGCACATAC
516 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATAC
* *
15912218 TGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGCCGGGGCACCATCGTCGCAGCATCGTC-
581 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCG-AGCATCGCCA
*
15912282 GAGAACCTGACCGACGGCATTTGGGTTTCGGTGATCGGGGGGCC-GGGGGGTGTGCGCACATGAT
645 GAGAACCTGATCGACGGCA-TTGGGTTTCGGTGATCGGGGGGCCAGGGGGGTGTGCGCACATGAT
* *
15912346 ATGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
709 GTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
*
15912411 CACACCACCTAAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
774 CACACC-CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
15912476 AATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTGTAGCTGAA
838 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT-TAGCTGAA
* * * * *
15912536 TTTTTTTTTGCAAGCCAATAAAAATACAAGGATCACATCTACGAAGTTTGGGGCCAAAACTCTTT
1 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTT
* ** *
15912601 CTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAAAAAACGA
66 CCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
*
15912666 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAT
131 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* *
15912731 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCAC
196 AAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * *
15912796 AGCTTGCGCATCCCGTCTCTCTGGCCGACGTA-G--TGCCCGCCCGCCCGCCCGCTCGTTTTGTC
261 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGGCCTGCCCGCCCGCCCGCCCGCTCGTTTCGTA
* *
15912858 GGTTGGCTTTGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGTAG
326 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGATAG
* * * * * *
15912923 CAGGATCGACAGCAGGGAGAGGGGGACCCGATCGATCCCCGACTTTCGCATCTCGCCCCTCTGGC
391 CAGGATCGGCAGCACGCAGAGGGGGA-CCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGC
* * * * * *
15912988 CGGCTGAGCGCCCGTACCTTGTTTCGTGGGTTGACTTAGTCATACAGAGTTCGTTCCCAGTCTAA
455 CGGCTGAGCGCCCGCACCTCGATTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * * * *
15913053 GCATACGGAGTTCATTCGTAGTCTAAGATCAGATCAAACTGAGGGTTGCGGCAACACATTCTGGG
520 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATACTGGG
* * * *
15913118 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCAGGGGCACCATCGCTTGAGCATCACCGGAGA
585 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCG-TCGAGCATCGCCAGAGA
* * * *
15913183 AACTGATCGACGGCATTAGGTTTCTGGTGATCGGGGGGCCAGGGGGGTGTGCGTACATGATGTGC
649 ACCTGATCGACGGCATTGGGTTTC-GGTGATCGGGGGGCCAGGGGGGTGTGCGCACATGATGTGA
* * *
15913248 GATAGGTGCTGGTACTTGGCCCTTGTATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCACA
713 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
15913313 CCCCTTTAAATAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
778 CCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
15913378 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
842 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTAGCTGAA
* * *
15913434 TTTTTTTATGCATGCCAACAAAAATACAAGGATCGCGTCTACCAAGTTTGGGGCCAAAACTCCTT
1 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTT
* ** * *
15913499 TCGAAAAAATTTTAAAAAATCCCGAACCAAAAAAAGTTTCAAAAATCGTGAAGAATAGAAAACGA
66 CCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
*
15913564 GTCGTCTTGCCATGAAACTTCTCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
131 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * *
15913629 AAATAGTATTGGCATGCAAAAATATGAAGATTTGCCTAAACCC
196 AAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCC
15913672 GGCTTGCGCA
Statistics
Matches: 1828, Mismatches: 193, Indels: 43
0.89 0.09 0.02
Matches are distributed among these distances:
896 151 0.08
897 189 0.10
898 412 0.23
899 4 0.00
901 157 0.09
902 311 0.17
904 8 0.00
905 30 0.02
906 243 0.13
907 323 0.18
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (896 bp):
TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTT
CCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
AAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGGCCTGCCCGCCCGCCCGCCCGCTCGTTTCGTA
GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGATAG
CAGGATCGGCAGCACGCAGAGGGGGACCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCC
GGCTGAGCGCCCGCACCTCGATTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATACTGGGC
TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGAGCATCGCCAGAGAAC
CTGATCGACGGCATTGGGTTTCGGTGATCGGGGGGCCAGGGGGGTGTGCGCACATGATGTGAGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTAGCTGAA
Found at i:15913058 original size:26 final size:26
Alignment explanation
Indices: 15913028--15913079 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
15913018 TTGACTTAGT
*
15913028 CATACAGAGTTCGTTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
* **
15913054 CATACGGAGTTCATTCGTAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
15913080 ATCAGATCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAG
Found at i:15913773 original size:26 final size:26
Alignment explanation
Indices: 15913737--15913789 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15913727 GTTGACTTAG
15913737 GCATACAGAGTTCA-TTCCTAGTCTAA
1 GCATACAGAGTTCATTTCC-AGTCTAA
*
15913763 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTTCCAGTCTAA
15913789 G
1 G
15913790 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTTCCAGTCTAA
Found at i:15914357 original size:700 final size:700
Alignment explanation
Indices: 15912960--15914371 Score: 2109
Period size: 700 Copynumber: 2.0 Consensus size: 700
15912950 CCGATCGATC
* * * *
15912960 CCCGACTTTCGCATCTCGCCCCTCTGGCCGGCTGAGCGCCCGTACCTTGTTTCGTGGGTTGACTT
1 CCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACCTCGTTTCGTGGGTTGACTT
* * * * *
15913025 AGTCATACAGAGTTCGTTCCCAGTCTAAGCATACGGAGTTCATTCGTAGTCTAAGATCAGATCAA
66 AGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCGCAGTCTAAGATCAAACCAA
* * * ** *
15913090 ACTGAGGGTTGCGGCAACACATTCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCAGG
131 ACCGAGGGTTACGACAACACATGATGGGCTCGGGCATGTGCTGGTGACGCATTTTTCTTCGCAGG
* * **
15913155 GGCACCATCGCTTGAGCATCACCGGAGAAACTGATCGACGGCATTAGGTTTCTGGTGATCGGGGG
196 GGCACCATC-C-T--G----ACCGGAGAAACTGATCGACGGCATTAGGGTTCCGACGATCGGGGG
* * *
15913220 GCCAGGGGGGTGTGCGTACATGATGTGCGATAGGTGCTGGTACTTGGCCCTTGTATTGGCCCCCT
253 GCCAGGGGGGTGTGCGCACATGATGTGCGATAGGTACTGGTACTTGGCCCTTATATTGGCCCCCT
* * * *
15913285 ATCTCTCATCAAACCTCGAGAACTCACACCCCTTTAAATAGCATTTGAGATTTTACAGGTTTGCT
318 ATCCCTCATCAAACCTCAAGAACTCACACCCCTTTAAAGAGCATCTGAGATTTTACAGGTTTGCT
*
15913350 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
383 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTCTCAAATGGTCACAAAATCTTGTACA
* * * *
15913415 CTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCGCGTCTACCAAG
448 CTCCAAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAG
15913480 TTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCAAAAAAAGTTTCAAAAAT
513 TTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCAAAAAAAGTTTCAAAAAT
* * * * * * *
15913545 CGTGAAGAATAGAAAACGAGTCGTCTTGCCATGAAACTTCTCGTGAAGGCTTAAGGGACCATTGT
578 CGTGAAAAAAAGAAAACAAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTCT
*
15913610 ATGAATTTACAAGCCATAAAAATAGTATTGGCATGCAAAAATATGAAGATTTGCCTAAA
643 ATGAATTTACAAGCCATAAAAATAGCATTGGCA-GCAAAAATATGAAGATTTGCCTAAA
*
15913669 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
1 CCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC-CTCGTTTCGTGGGTTGACT
*
15913734 TAGGCATACAGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTTC-CAGTCTAAGATCAAACC
65 TAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA-TTCGCAGTCTAAGATCAAACC
** * * *
15913798 GGACCGAGGGTTACGACAACACATGATGGGCTTGGGCATGTGTTGGTGATGCATTTTTCTTCGTC
129 AAACCGAGGGTTACGACAACACATGATGGGCTCGGGCATGTGCTGGTGACGCATTTTTCTTCG-C
* * * *
15913863 -GGGGCACCAT-C-G-CCGGAGAACCTGATCGGCGGTATTGGGGTTCCGACGATCGGGGGGGCCA
193 AGGGGCACCATCCTGACCGGAGAAACTGATCGACGGCATTAGGGTTCCGACGATC-GGGGGGCCA
* *
15913924 GGGGGGTGTGTGCACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCC
257 GGGGGGTGTGCGCACATGATGTGCGATAGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCC
15913989 CTCATCAAACCTCAAGAACTCACACCCC-TTAAAGAGCATCTGAGATTTTACAGGTTTGCTGCCA
322 CTCATCAAACCTCAAGAACTCACACCCCTTTAAAGAGCATCTGAGATTTTACAGGTTTGCTGCCA
*
15914053 TTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTCTCAAATGGTCACAAAATCTTGTACACTCC
387 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTCTCAAATGGTCACAAAATCTTGTACACTCC
*
15914118 AAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAATACAAGGATCACGTCTACCAAGTTT
452 AAGTTTTTAGCTGAATTTTTTTATGCATGCC-AAAAAAAATACAAGGATCACGTCTACCAAGTTT
* **
15914183 GGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGT
516 GGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCAAAAAAAGTTTCAAAAATCGT
15914248 GAAAAAAAGAAAACAAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTCTATG
581 GAAAAAAAGAAAACAAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTCTATG
*
15914313 AATTTACAAGCCATAAAAATGGCATTGGCA-CATAGAAATATGAAGATTTGCCTAAA
646 AATTTACAAGCCATAAAAATAGCATTGGCAGCA-A-AAATATGAAGATTTGCCTAAA
15914369 CCC
1 CCC
15914372 ACCTACCACC
Statistics
Matches: 638, Mismatches: 58, Indels: 23
0.89 0.08 0.03
Matches are distributed among these distances:
698 2 0.00
699 157 0.25
700 298 0.47
704 1 0.00
708 1 0.00
709 41 0.06
710 134 0.21
711 4 0.01
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.27
Consensus pattern (700 bp):
CCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACCTCGTTTCGTGGGTTGACTT
AGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCGCAGTCTAAGATCAAACCAA
ACCGAGGGTTACGACAACACATGATGGGCTCGGGCATGTGCTGGTGACGCATTTTTCTTCGCAGG
GGCACCATCCTGACCGGAGAAACTGATCGACGGCATTAGGGTTCCGACGATCGGGGGGCCAGGGG
GGTGTGCGCACATGATGTGCGATAGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
TCAAACCTCAAGAACTCACACCCCTTTAAAGAGCATCTGAGATTTTACAGGTTTGCTGCCAGTAG
CCATTAAAGTGTCTGAAATGGGGACACTTTTCTCAAATGGTCACAAAATCTTGTACACTCCAAGT
TTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
CAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCAAAAAAAGTTTCAAAAATCGTGAAAA
AAAGAAAACAAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTCTATGAATTT
ACAAGCCATAAAAATAGCATTGGCAGCAAAAATATGAAGATTTGCCTAAA
Found at i:15918653 original size:26 final size:26
Alignment explanation
Indices: 15918623--15918675 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15918613 GTTGACTTAG
15918623 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
15918649 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15918675 G
1 G
15918676 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15922639 original size:717 final size:714
Alignment explanation
Indices: 15920995--15929667 Score: 6877
Period size: 717 Copynumber: 11.9 Consensus size: 714
15920985 GACCGAGGGT
* * * * *
15920995 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATTGCCTGAGCATCACCGGAGAACTTGACCGG
1 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGA
* * * *
15921060 CGACACTGGGGTTCTGGTGATCGGGGGGGCCGGGCGGGGTGTGCGCACATGATGTGCGATGGGTG
66 CGGCATTAGGGTTC-CGTGATCGGGGGGGCC-GG-GGGGTGTGCGCACATGATGTGCGATGGGTG
*
15921125 CTGGTACTTGGCCCATATATTGG-CCCCTATCCCTCATCAAACCAT-GAGAACTCACACCCCCTT
128 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCGAGAACTCACACCCCCTT
** *
15921188 AAAGAGCAGATGAGATTTTACGGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
192 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGACAC
* * * *
15921253 TTTTTTTAAATGGTCACAAAATCTTGTATACTTCGAGTTTTTAGCTGATTTTTTTTGTGCTTGCC
256 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * *
15921318 AAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAATATGCCTTCTGAAAAAATTTTAA
321 AATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAT-CCTTCCGAAAAAATTTTAA
** ** * * *
15921383 AAAATC-CGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGC
385 AAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * *
15921447 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAACCCATAAAAATGGCATTGGCTT
450 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * * * *
15921512 GCAGAAATATGAAGATGTGGCTAAACCCACCTACCACCGTATCGATCCATGGCTTGCACATCTCG
515 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * *
15921577 TCTCTCTGGCAGGCGTAGTGC-CCGCCCG--C-CCGCCCGCTCGTTTCGTTGATTGGCTTA-GTA
580 TCTCTCTGGCCGGCGT--TGCGCCGCCCGCCCGCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * ** *
15921637 TACGGAGTCCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTTCGGTAGCACATGCTGGGCTT
643 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTC
15921702 GGGCATG
708 GGGCATG
* * *
15921709 TG-TCGGTGTCGTATTTTTCTTCGTCGGGGCACCATC-CCTGGAGCATCGTCGGAGAACCTGACC
1 TGCT-GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCC-GGAGCATCGCCGGAGAACCTGACC
** * * *
15921772 GGTGGC-TTTGCAGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
64 GACGGCATTAG-GGTTCCG-TGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
* * **
15921836 GCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCAACAAACCTCGAGAACTCACACCCCCGA
127 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * * *
15921901 AAAGAGCATTTCAGATTTTACAGGTTTGCTGCCATTAGCAATTAAAATGTCTGAAATGGGCACAC
192 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG-ACAC
* * * *
15921966 TTTTTTCAAAAGGTCACAAAATGTTGTACACTTCAATTTTTTAGCTGAATTTTTTTGTGCATGCC
256 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * **
15922031 AATAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAAACCTTCAAAAAAAATTTTAAA
321 AATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAA
* * * *
15922096 AAATCTCGAACTGCAAAAAGTTTTGAAAATCGTGAAAATTAGAAAATGAGTCGTCTTGCCATGAA
386 AAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
15922161 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
451 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
*
15922226 TAGAAATATGAAGATGT-CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
516 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
*
15922290 CTCTCTGGCCGGTGTTGCGACCGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
581 CTCTCTGGCCGGCGTTGCG-CCGCCCGCCCG-CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * *
15922355 ACGGAGTTCATTCCAAGTCCAAGATCAGACTGGACCGAGGGTTACCACAGCACATGCTGGGCTCG
644 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCG
15922420 GGCATG
709 GGCATG
* * * *
15922426 TGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATTGTCGGAGAACCTGACCGA
1 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGA
15922491 CGGCATTAGGGTTCCAGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
66 CGGCATTAGGGTTCC-GTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * *
15922556 GGTACTTGGCCCTTATATTGCCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAG
130 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * * *
15922621 GACCATTTGAGATTTTACAGGTTTGCTACCAGTAGCAATTAAAGTGTCTGAATTAGGGACACTTT
195 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGACACTTT
* * *
15922686 TTTCAAATGGTCATAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGGCAAA
259 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAT
* * * * *
15922751 AAAAATGCAAGGATCACATCTACCAGGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAACAA
324 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAA-AA
* * * * *
15922816 CTCTTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAAAAAATGAGTCGTCATGCCATGAAAC
388 ATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
*
15922881 TTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
453 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
*
15922946 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCT
518 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * *
15923011 CTCTGGCCGGCGTAGTGC-CCGCCCGCTCGCCCGCCCGCTCGTTTCGTCGATCGACTTAGGCATA
583 CTCTGGCCGGCGT--TGCGCCGCCCGCCCG-CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * *
15923075 CGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTG-TAGCAGCACATGCTGGGCTCG
645 CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGA-CAGCACATGCTGGGCTCG
**
15923139 ACCATG
709 GGCATG
* * ** * *
15923145 TGCTGGTGCCGCTTTTTTCTTCATCGGGGCACCATCGTTGGAGCATCGTCGGAGAACCTGACCGG
1 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGA
* * * * * * **
15923210 CGACATTGGGGTTCCGGTGATCGAGGGGGCTGGGTGGTGTGCTCACATGATGTGCGAT-GGCCCT
66 CGGCATTAGGGTTCC-GTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
** * * *
15923274 TATA-TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAATCTCAAGAACTCCCACCCCCTTAAA
130 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * *
15923338 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGACTAAAATGGGGACACTTT
195 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGACACTTT
* *
15923403 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTGTGCATGCAAAT
259 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAT
* * *
15923468 AAAAATACAAGGATCCCGTCTACCAAGTTTGGGGCGAAAAACTCCTTTCGAAAAAATTTTAAAAA
324 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAA-TCCTTCCGAAAAAATTTTAAAAA
* * * ** * *
15923533 ATCCCGAACCGCAAAAAATTTCAAAAATCGTGAAAAATAGAAAACGGGTCGTCTTGCGATGAAAC
388 ATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * * * **
15923598 TTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTATAAGCCGTAAAAATGGCACTGGCACACA
453 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
* ** * *
15923663 GAAAGTATGAAGATGTACCTAAACTAACCTACCACCCTATCGATCAACAGCTTGCGCATCCCGTC
518 GAAA-TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * *
15923728 TCTCTAGCCGGCGTACTGC-CCGCCCG--C-CCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATG
582 TCTCTGGCCGGCGT--TGCGCCGCCCGCCCGCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * **
15923789 CGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCAA
645 CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGG
15923854 GCATG
710 GCATG
* * * * *
15923859 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCACCACTGGAGCATCGTCGGAGAACCTGACCGG
1 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGA
* * *
15923924 CGGTATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGTGTGCTCACATGATGTGCGATGGGTGCT
66 CGGCATTAGGGTTCC-GTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* ** * *
15923989 GGTAATTGGCCCTTATATTTTCCCGCTATCCCTCATCAAACCTCGAGAACTCCCACCCCCTTAAA
130 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
15924054 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGACTGAAATGGGGACACTTT
195 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGACACTTT
* * * * * *
15924119 TTTCAAATGGTCACAAAATCTTGTACACTTCGTGGTTTTAGCTGATTTTTTTTATGCATACCAAA
259 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAT
* * * * *
15924184 AAAAATTCAAGGATCACCTCTACCCAGTTTGGGACCCAAAATCCTTCCGAAAAAATTTTAAAAAA
324 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAA
* ** * * *
15924249 TCCCGAACCACAAAAATTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGGCATGAAACT
389 TCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
*
15924314 TCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
454 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
* *
15924379 AAATATGAAGATGTGCCTAAACCCACCTTCCACCCTATCGATCCACGGCTTGCGCAT-CC--C-A
519 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* ** * *
15924440 TC-GG-TGTAG-TGC-TCGCCCG--C-CCGCCCGCTTGTTT-GATCGGTTGGCTTAGGCATACGG
584 TCTGGCCGGCGTTGCGCCGCCCGCCCGCCGCCCGCTCGTTTCG-TCGGTTGGCTTAGGCATACGG
* * * * * * *
15924497 AGTTCATTCCCAGCCTAAGATCAAACCGGACCAAGGGTTACGACAGCACATACTGTGCTAGGGCA
648 AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCA
15924562 TG
713 TG
** * * * *
15924564 TGCTGGTGCCGCATTTTTCTTCGTTAGGCCACGATCACCGCAGCATCGCCGGAGAACCTGACCGA
1 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGA
* * * * *
15924629 CGGCGTTGGGGTTCCTGCGATCGGAGGGGCCGGGGGGTGTGCGAACATGATGTGCGATGGGTGCT
66 CGGCATTAGGGTTCC-GTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * * *
15924694 GGTACCTGGCCCTTATATTGG-CCCCTATCCCTCATCAAATCTCGACAACTCGCA-CCCCTTAAA
130 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
*
15924757 GAGCA-TTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
195 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGACACTTT
**** ** * * * *
15924821 TTTCAAATGGTCACAAACA-AAAATACAAGGAT-GACG--TCTA-C-CAA---GTTTG-G--GGC
259 TTTCAAATGGTCACAAA-ATCTTGTAC-A-CTTCGA-GTTTTTAGCTGAATTTTTTTGTGCATGC
* ** * ** ** * **
15924874 C-------A-A-AA--ATC-CTTCTGAAAAAATTT----TAAAAAATCCCGAACCGCAAAAGGTT
320 CAATAAAAATACAAGGATCACGTCT-ACCAAGTTTGGGGCCAAAAAT-CC-TTCCGAAAAAATTT
* ** ** ** *
15924923 TCAAAAATCATAAAAATAG-AAAACGAGTCATCTTGCCATGAAACTTCACGTGAAAGCTTA-AGG
382 TAAAAAATC-T-CGAACCGTAAAA--AGT--T-TTG--A--AAA--T--CGTGAAA-AATAGA-A
* * * * * * * ** **
15924986 GACCATTGTATGAAT-TTACAAGCCATAAAAATGGCA--T--TGGCTCATAAAAATATGAAGATG
430 AACGA--GT-CG--TCTT----GCCATGAAACT-TCACGTGAAGGCT--T---AA-GGGACCAT-
* ** * * *** * * *** * * *
15925046 TGCGTA-AACCCACCTACCACCCTATCGATCCATGGC-TTGCGCATCCCGTCTCTCTGGCAGGCG
478 T--GTATGA---ATTTACAAGCC-AT--AAAAATGGCATTG-GCATGCAG-AAATAT-G-AAG-A
** * * * * *** ** * *
15925109 TAGTGCCCGCT-TGCCCGCCTGCCTGCCC-ACTCGTTTTGTCGG-TTG-GC-T-TAGGCAT-AC-
530 T-GTG--C-CTAAACCCACCTACC-ACCCTA-TCG-ATCCACGGCTTGCGCATCCCGTC-TCTCT
* * * ** ** * * **** * * *
15925166 GG-AGTTCATT-C-CCAGTCTAAGATCGAACTAGACCAAGGGTTGCAGTAGCAGGATCGAC--A-
587 GGCCG-GCGTTGCGCC-G-C-CCGCCCG--C-CGCCCGCTCGTTTC-GT--C-GG-TTGGCTTAG
* * ** ** * * ***
15925225 GTACACAGAGAG-GGA--CCCAGTC-AATCCTC-GACTTGCGCATCCCACCCCTCTGGCCGACTG
640 GCATAC-G-GAGTTCATTCCCAGTCTAA-GATCAGAC---CGGA-CCGA-GGGT-T-G-CGAC--
* **** *
15925285 AGCGCCCATACGCTCATTTCGTGG-GT-
692 A--GCACAT--GCTGGGCTCG-GGCATG
** * * * * *** * * * ** * **
15925311 TGACTTAGGCAT-ATGGAGTTCATTCCTAGTCTAAGCA-TATAG--AGTTCATTCTCAGTCTAAG
1 TG-C-T-GG--TGCCGCA-TT-TTTCTTCGTCGGGGCACCATCGCCGGAGCA---TC-GCCGGAG
* * * ** * ** ** *
15925372 ATCAGACTCGACCGAGGGC--TACGGTAGCAT-AT--GCTGGGCTCGGGCATGTGCTGGTGTCAC
55 A--A-CCT-GACCGACGGCATTAGGGTTCCGTGATCGGGGGGGC-CGGG-GGGTG-T-GCG-CAC
* ** * * * * * * * * * * **** * **
15925432 TTTTTTCTTCACCGA-GGCACCATCGTCGGAGAACCTGACCGGTAACATTGGGGTTCTGTCAATC
111 -ATGAT-GT--GCGATGG----GT-G-CTG-GTACTTGGCC-CTTATATTGGCCCCCTATCCCTC
******* * *** * * ** ** ** ** * * ** ** **
15925496 -GGGGGGGTCGGGGGTGTGCGCACGCGATGTAAGATGGGTGCGGGTACTTGGC-CCTTATATTGG
164 ATCAAACCTC-GAGAACT-CACACCCCCTTAAAGA-GCATTTGAG-ATTTTACAGGTT-TGCT-G
** * *** * **** ** *
15925559 CCCCCTATCC-TTCATCAAACCTC-GAGAACT--CACACCCCCTT-AAA-GAG-CATTTGAGAT-
223 -CCAGTAGCCATT-A--AAGTGTCTGA-AA-TGGGACACTTTTTTCAAATG-GTCA--CAAAATC
* * ** **** * * ***** **
15925616 TT-TACAGGTTTACTGCCAGTAGTCATTAAAG-TGTCTGAAATGGGGACACTTTTTTTAAAGGGT
279 TTGTACA--CTT-C-G--AGT--T--TT-TAGCTGAATTTTTTTGTG-CA-TGCCAATAAA-AAT
* ** ** *** * *** ** * *
15925679 CACAA-AATCTTGTAC-ACTTTGAGTTTTTAGCTGAATTTTTTTTTACTGCCAACAAAA--ATAC
330 -ACAAGGATCACGT-CTAC--CAAGTTTGGGGC-CAA-AAATCCTT-C--CGAA-AAAATTTTA-
** * * ** * * * *
15925740 AAGGATCACG--TC-TACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCG
384 AAAAATCTCGAACCGTAAAAAGTTT--TG--AAAA-T-CGT---GAAAAA---TAGAAAA---CG
* * ** *** * *** * * * * *
15925802 A-ACCTCAAAAAGTTTTGAAAATT-A--TGAAAAATAGAAAACGAGTCGTC-TTGCCATCAAACT
434 AGTCGTC---TTGCCATGAAACTTCACGTGAAGGCT---TAA-GGGAC--CATTG-TAT-GAA-T
* * * * * ** * * * *
15925862 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCACTGGCATGTAG
487 TTAC---AAGCCATAA---A--AATG---GCATTGGCATG-CAGAAATAT-G-A--AG-ATGT-G
** **** * *
15925927 AAATATGAAGATGTGCCTA-AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCT
534 ---CCT-AA-ACCCACCTACCA-CC----------CTATCGATCCACGGCTTGCGCATCCCGTCT
* * * * **
15925991 CTCTGGCCGACGTAGTGCCAGCCCG--C-CCGCCCGCTCGTTTCGTTGGTTGGCTTACTCATACG
583 CTCTGGCCGGCGTTGCGCC-GCCCGCCCGCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
*
15926053 GAGTCCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGC-AGCAGCACATGCTGGGCTCGGG
647 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGA-CAGCACATGCTGGGCTCGGG
15926117 CATG
711 CATG
** ** * *
15926121 TGCTGGTGCCATATTTTTCTTCGTCGGGGTGCCATCACCTGAGCATCGCCGGAGAACCTGACCGA
1 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGA
* * *
15926186 CGGC-TTTGCGGTTTCGATGATCGGGGGGGCCGGGGGGTGTGCGCACATGAAGTGCGATGGGTGC
66 CGGCATTAG-GGTTCCG-TGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* * *
15926250 TGGTACTTGGCCCTTATATTGGCCTCCTATCCCCCATCAAACCTCGAGAACTCCCACCCCCTTAA
129 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
15926315 AGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGAGACACTT
194 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG-GACACTT
* *
15926380 TTTTCAAAAGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
258 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * *
15926445 TAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAA
323 TAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAA
* *
15926510 ATCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAATTAGAAAACGAGTCGTCTTGCCATGAAAC
388 ATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * *
15926575 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAACGTA
453 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
* * * * *
15926640 GAAATATGAAGATCTACGTAAACCCGCCCACCACCCTATCGATCCACGGCTTGCGCATCCCG---
518 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
** ** * * *
15926702 C-C--GATGTAG-TGC-TCGCCCG--C-CCGCCCGCTTGTTTCGTCGATTGGCTTAGGCATACGG
583 CTCTGGCCGGCGTTGCGCCGCCCGCCCGCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* * * **
15926759 AGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCACATGCTTGGCTCGACCA
648 AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCA
15926824 TG
713 TG
* ** * * *
15926826 TGCTGGTGCCGCACATGCTGTGCTCGGGCATGTGCTGGTGC-CGCATTTTTCTTTGTCGGGGCAC
1 TGCTGGTGCCG--CAT--T-T-TTC-TTC--GT-C-GGGGCAC-CA----TC---GCCGGAG--C
* * * **
15926890 TATCGTCGGAGAACCTGACCGGCGACATT-GTGGTTCCAGTGATCAAGGGGGCCGGCGGGGTGTG
45 -ATCGCCGGAGAACCTGACCGACGGCATTAG-GGTTCC-GTGATCGGGGGGGCCGG-GGGGTGTG
* * *
15926954 CGCGCATGATGTGCGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAAT
106 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* * *
15927019 CTCGCGAACTCACA-CCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTA
171 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* * * * ** *
15927083 AAGTGTCTAAAATGGGACACTTTTTTGAAATGGTCACCAAAATGTTTTACTGTTGGAGTTTTTAG
236 AAGTGTCTGAAATGGGACACTTTTTTCAAATGGTCA-CAAAATCTTGTACACTTCGAGTTTTTAG
* * *
15927148 CTGAA-TTTTTTATGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAA
300 CTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAA
** * ** * ** *
15927212 TTTTTTCGAAAATTTTTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGA
365 TCCTTCCGAAAA-AATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGA
* * * *
15927277 AAATGAGTCATCTTGCCATAAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAG
429 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* *
15927342 CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTTCCTAAACCCACCTACCACCCTATCT
494 CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* *
15927407 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC-CCGCCCGCCTGCCCGCCCGTTC
559 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT--TGCGCCGCCCGCCCG-CCGCCCGCTC
* * * * *
15927471 GTTTTGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCCAGGGT
621 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGT
* * * *
15927536 TGTGGCAGCACATGCTGGGCTCGAGCCTG
686 TGCGACAGCACATGCTGGGCTCGGGCATG
* * * * *
15927565 TGCTGGTGCCGCA-TTTTCCTCGCCAGGGCACCATCGCCAGAGCATCGCCGGAGAACCTGATCGA
1 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGA
* * * * * * * * * **
15927629 CGACACTAGGGTTCCGGTGATCGGGGTGGCCGGAGGGTCTACGCGCATGATATGCAATCTGTGCT
66 CGGCATTAGGGTTCC-GTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* *
15927694 GGTACTTGGCCCGTATATTGGCCCCCTATCCCTCACCAAACCAT-GAGAACTCACACCCCCTTAA
130 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCGAGAACTCACACCCCCTTAA
* * *
15927758 AGAGCATTTGGGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAATGGGGACACTT
194 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGACACTT
* * * *
15927823 TTTCCAAATGGTCACAAAATCTTTTACACTTCGAGTATTTAGCTGATTTTTTTTGTGCATGCCAA
258 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * * *
15927888 CAAAAGTTCAAGGATCACGTCTACCAAGTTTTGGGCC-AAAATGCCTGCCGAAAAAATTTTAAAA
323 TAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAT-CCTTCCGAAAAAATTTTAAAA
* * * * * * *
15927952 AATCCCGAA-CGATAAAAAGTTTGGAAAATCATGAAAAATAAAAAATGAGTCGACTTGCCATGCA
387 AATCTCGAACCG-TAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
*
15928016 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCACTGGCATG
451 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* *
15928081 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGT
516 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * * * **
15928146 CTCTCTGGCCGACGTAGTGCCAGCCCG--C-CCGCCCGCTCGTTTCGTTGATTGGCTTACTCATA
581 CTCTCTGGCCGGCGTTGCGCC-GCCCGCCCGCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
*
15928208 CGGAGTCCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGC-AGCAGCACATGCTGGGCTCG
645 CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGA-CAGCACATGCTGGGCTCG
15928272 GGCATG
709 GGCATG
** ** * *
15928278 TGCTGGTGCCATATTTTTCTTCGTCGGGGTGCCATCACCTGAGCATCGCCGGAGAACCTGACCGA
1 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGA
* * *
15928343 CGGC-TTTGCGGTTTCGATGATCGGGGGGGCCGGGGGGTGTGCGCACATGAAGTGCGATGGGTGC
66 CGGCATTAG-GGTTCCG-TGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* * *
15928407 TGGTACTTGGCCCTTATATTGGCCTCCTATCCCCCATCAAACCTCGAGAACTCCCACCCCCTTAA
129 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
15928472 AGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGAGACACTT
194 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG-GACACTT
* *
15928537 TTTTCAAAAGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
258 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * *
15928602 TAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAA
323 TAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAA
* * *
15928667 ATCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAATTAGAAAACGAGTCGTCTTGCCATTAAAC
388 ATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* *
15928732 TTCACGTGAAGGCTTAAGGGATCATTGTATGAATTTACAAGCCATAAAAATGGCACTGGCATGCA
453 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
* *
15928797 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCCATCGATCCACGACTTGCGCATCCCGTCT
518 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
** * * * * *
15928862 CTCTGGCTAGTGTAGTGCCTTCCCGCCCGCCTGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
583 CTCTGGCCGGCGTTGCGCC-GCCCGCCCGCC-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
** * * * *
15928927 AAAGTTCATTCCAAGTCTAAGATCAGACTGGACCGAGGGTTGTGACAGCACATACTGGGCTCGGG
646 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGG
15928992 CATG
711 CATG
* * * *
15928996 TGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACTGG
1 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGA
* *
15929061 CGGCATTAGGGTTCCGACGATCGGGGGGGCCGAGGGGGGTGTGCGCACATGATATGCGAT-GGTG
66 CGGCATTAGGGTTCCG-TGATCGGGGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * *
15929125 CTGGTACTGGGCCCTTATATTGGCCCCCTATCCCTCATCAAACGTCAAGAACTCACACCCCCTTA
128 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * * * *
15929190 AGGAGCAATTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAATTAGGGACACT
193 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGACACT
* *
15929255 TTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCA
257 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * * * *
15929320 AAAAAAATTCAAGGATCACCTCTACCCAGTTTGGGGCAAAAAATCCTTCCAAAAAAATTTTAAAA
322 ATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAA
* * *
15929385 AATCTTGAACCGTAAAAATTTTTGAAAATCGTGAAAAATAGAAAACGA-TCGTCTTGGCATGAAA
387 AATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* *
15929449 CTTCACGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGACATTGGCATGC
452 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* *
15929514 AGAAATATGAAGATGTGTCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTC
517 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * * * * *
15929579 TCTCTGGTCGGCGTACTGC-CCACCCGCACGCTTGGCCGCTCATTTTGTCGGTTGGCTTAGGCAT
582 TCTCTGGCCGGCGT--TGCGCCGCCCGCCCGC-CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
15929643 ACGGAGTTCATTCCCAGTCTAAGAT
644 ACGGAGTTCATTCCCAGTCTAAGAT
15929668 TGGATTGGAC
Statistics
Matches: 6328, Mismatches: 1213, Indels: 832
0.76 0.14 0.10
Matches are distributed among these distances:
679 5 0.00
680 2 0.00
681 17 0.00
682 8 0.00
683 10 0.00
684 2 0.00
685 2 0.00
686 1 0.00
687 3 0.00
689 1 0.00
691 3 0.00
693 1 0.00
694 2 0.00
695 8 0.00
696 6 0.00
697 3 0.00
698 2 0.00
699 1 0.00
700 3 0.00
701 6 0.00
702 79 0.01
703 19 0.00
704 40 0.01
705 339 0.05
706 3 0.00
707 8 0.00
708 6 0.00
709 3 0.00
710 10 0.00
711 4 0.00
712 149 0.02
713 431 0.07
714 871 0.14
715 170 0.03
716 322 0.05
717 1064 0.17
718 702 0.11
719 554 0.09
720 37 0.01
721 4 0.00
722 12 0.00
723 17 0.00
724 15 0.00
725 88 0.01
726 316 0.05
727 88 0.01
728 3 0.00
729 2 0.00
730 5 0.00
731 2 0.00
732 5 0.00
733 3 0.00
734 12 0.00
735 24 0.00
736 11 0.00
737 9 0.00
738 8 0.00
739 110 0.02
740 1 0.00
741 1 0.00
742 4 0.00
744 8 0.00
746 5 0.00
747 6 0.00
748 8 0.00
749 6 0.00
750 7 0.00
751 5 0.00
752 20 0.00
753 15 0.00
754 13 0.00
755 9 0.00
756 8 0.00
757 10 0.00
758 11 0.00
759 1 0.00
760 6 0.00
761 3 0.00
763 2 0.00
764 2 0.00
765 9 0.00
766 11 0.00
767 11 0.00
768 11 0.00
769 19 0.00
770 6 0.00
771 13 0.00
772 5 0.00
773 13 0.00
774 19 0.00
775 12 0.00
776 21 0.00
777 3 0.00
778 8 0.00
779 2 0.00
780 3 0.00
781 1 0.00
782 6 0.00
783 3 0.00
784 18 0.00
785 10 0.00
786 13 0.00
787 5 0.00
788 10 0.00
789 18 0.00
790 10 0.00
791 2 0.00
792 1 0.00
793 1 0.00
796 3 0.00
797 2 0.00
798 1 0.00
799 10 0.00
800 6 0.00
801 7 0.00
802 4 0.00
803 14 0.00
804 23 0.00
805 17 0.00
806 20 0.00
807 11 0.00
808 14 0.00
809 14 0.00
810 3 0.00
811 16 0.00
812 7 0.00
813 10 0.00
814 3 0.00
815 11 0.00
816 8 0.00
817 1 0.00
818 4 0.00
819 8 0.00
820 6 0.00
821 3 0.00
822 11 0.00
823 12 0.00
824 5 0.00
825 7 0.00
826 3 0.00
827 3 0.00
828 4 0.00
829 5 0.00
830 2 0.00
831 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (714 bp):
TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGA
CGGCATTAGGGTTCCGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGACACTTTTT
TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAATAA
AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATC
TCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
TGGCCGGCGTTGCGCCGCCCGCCCGCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
TCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATG
Found at i:15923044 original size:12 final size:12
Alignment explanation
Indices: 15923027--15923051 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
15923017 CCGGCGTAGT
15923027 GCCCGCCCGCTC
1 GCCCGCCCGCTC
15923039 GCCCGCCCGCTC
1 GCCCGCCCGCTC
15923051 G
1 G
15923052 TTTCGTCGAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.64, G:0.28, T:0.08
Consensus pattern (12 bp):
GCCCGCCCGCTC
Found at i:15923284 original size:12 final size:12
Alignment explanation
Indices: 15923267--15923296 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
15923257 TGATGTGCGA
15923267 TGGCCCTTATAT
1 TGGCCCTTATAT
15923279 TGGCCCTTATAT
1 TGGCCCTTATAT
15923291 TGGCCC
1 TGGCCC
15923297 CCTATCCCTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.13, C:0.30, G:0.20, T:0.37
Consensus pattern (12 bp):
TGGCCCTTATAT
Found at i:15925348 original size:26 final size:26
Alignment explanation
Indices: 15925319--15925371 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15925309 GTTGACTTAG
*
15925319 GCATATGGAGTTCATTC-CTAGTCTAA
1 GCATATAGAGTTCATTCTC-AGTCTAA
15925345 GCATATAGAGTTCATTCTCAGTCTAA
1 GCATATAGAGTTCATTCTCAGTCTAA
15925371 G
1 G
15925372 ATCAGACTCG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (26 bp):
GCATATAGAGTTCATTCTCAGTCTAA
Found at i:15926842 original size:17 final size:17
Alignment explanation
Indices: 15926822--15926870 Score: 50
Period size: 15 Copynumber: 3.0 Consensus size: 17
15926812 TTGGCTCGAC
15926822 CATGTGCTGGTGCCGCA
1 CATGTGCTGGTGCCGCA
**
15926839 CA--TGCT-GTGCTCGGG
1 CATGTGCTGGTGC-CGCA
15926854 CATGTGCTGGTGCCGCA
1 CATGTGCTGGTGCCGCA
15926871 TTTTTCTTTG
Statistics
Matches: 24, Mismatches: 4, Indels: 8
0.67 0.11 0.22
Matches are distributed among these distances:
14 4 0.17
15 8 0.33
17 8 0.33
18 4 0.17
ACGTcount: A:0.10, C:0.29, G:0.37, T:0.24
Consensus pattern (17 bp):
CATGTGCTGGTGCCGCA
Found at i:15926885 original size:32 final size:32
Alignment explanation
Indices: 15926804--15926870 Score: 100
Period size: 32 Copynumber: 2.1 Consensus size: 32
15926794 GGTTGCGGCA
**
15926804 GCACATGCT-TGGCTCGACCATGTGCTGGTGCC
1 GCACATGCTGT-GCTCGGGCATGTGCTGGTGCC
15926836 GCACATGCTGTGCTCGGGCATGTGCTGGTGCC
1 GCACATGCTGTGCTCGGGCATGTGCTGGTGCC
15926868 GCA
1 GCA
15926871 TTTTTCTTTG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
32 31 0.97
33 1 0.03
ACGTcount: A:0.12, C:0.30, G:0.34, T:0.24
Consensus pattern (32 bp):
GCACATGCTGTGCTCGGGCATGTGCTGGTGCC
Found at i:15929543 original size:718 final size:715
Alignment explanation
Indices: 15925493--15929694 Score: 5467
Period size: 714 Copynumber: 5.9 Consensus size: 715
15925483 GGTTCTGTCA
* ** * ** *
15925493 ATCGGGGGGGTC-GGGGGTGTGCGCACGCGATGTAAGATGGGTGCGGGTACTTGGCCCTTATATT
1 ATCGGGGGGGCCGGGGGGTGTGCGCACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATT
*
15925557 GGCCCCCTATCCTTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
66 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* * * *
15925622 GGTTTACTGCCAGTAGTCATTAAAGTGTCTGAAATGGGGACACTTTTTTTAAAGGGTCACAAAAT
131 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGACACTTTTTTCAAATGGTCACAAAAT
* * *
15925687 CTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTT-TAC-TGCCAACAAAAATACAAGGATCACG
195 CTTGTACACTTCGAGTTTTTAGCTG-ATTTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACG
15925750 TCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACC-TCAAAAAG
259 TCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGT-AAAAAG
* *
15925814 TTTTGAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCCATCAAACTTCACGTGAAGGCTTAAG
323 TTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
*
15925879 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCACTGGCATGTAGAAATATGAAGATGTGCC
388 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCACTGGCATGCAGAAATATGAAGATGTGCC
* *
15925944 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGACGTAGTGC
453 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCAG-CGTAGTGC
* ** *
15926009 CAGCCCGCCCG-C-CCGCTCGTTTCGTTGGTTGGCTTACTCATACGGAGTCCATTCCCAGTCTAA
517 CAGCCCGCCCGCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* **
15926072 GATCAGACCGGACCGAGGGTTG-CAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATATT
582 GATCAGACCGGACCGAGGGTTGTGA-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
** * * * *
15926136 TTTCTTCGTCGGGGTGCCATCACCTGAGCATCGCCGGAGAACCTGACCGACGGC-TTTGCGGTTT
646 TTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTAGCGGTTC
15926200 CGATG
711 CGATG
15926205 ATCGGGGGGGCCGGGGGGTGTGCGCACATGA-AGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
1 ATCGGGGGGGCCGGGGGGTGTGCGCACATGATA-TGCGATGGGTGCTGGTACTTGGCCCTTATAT
* * * *
15926269 TGGCCTCCTATCCCCCATCAAACCTCGAGAACTCCCACCCCCTTAAAGAGCATTTCAGATTTTAC
65 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* *
15926334 AGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGAGACACTTTTTTCAAAAGGTCACAAAA
130 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG-GACACTTTTTTCAAATGGTCACAAAA
* * * *
15926399 TCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATAAAAGGATCACG
194 TCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACG
** *
15926464 TCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGT
259 TCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGT
*
15926529 TTTGAAAATCATGAAAATTAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
324 TTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
* * * * * * *
15926594 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAACGTAGAAATATGAAGATCTACGT
389 GACCATTGTATGAATTTACAAGCCATAAAAATGGCACTGGCATGCAGAAATATGAAGATGTGCCT
* * *
15926659 AAACCCGCCCACCACCCTATCGATCCACGGCTTGCGCATCCCG---C-C--G-A-TGTAGTGCTC
454 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCAGCGTAGTGC-C
* *
15926716 -GCCCGCCCG-C-CCGCTTGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
518 AGCCCGCCCGCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * **
15926778 ATCAGACCGGACCAAGGGTTGCGGCAGCACATGCTTGGCTCGACCATGTGCTGGTGCCGCACATG
583 ATCAGACCGGACCGAGGGTTGTGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG--CAT-
* ** * * * *
15926843 CTGTGCTCGGGCATGTGCTGGTGC-CGCATTTTTCTTTGTCGGGGCACTATCGTCGGAGAACCTG
645 -T-T-TTC-TTC--GT-C-GGGGCAC-CA----TC---GCCGGAG--C-ATCGCCGGAGAACCTG
* * *
15926907 ACCGGCGACATT-GTGGTTCC-AGTG
691 ACCGACGGCATTAGCGGTTCCGA-TG
** * * *
15926931 ATCAAGGGGGCCGGCGGGGTGTGCGCGCATGATGTGCGATGGGTGCTGGTACTTGGCCATTATAT
1 ATCGGGGGGGCCGG-GGGGTGTGCGCACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATAT
* * *
15926996 TGGCCCCCTATCCCTCATCAAATCTCGCGAACTCACA-CCCCTTAAAAAGCATTTGAGATTTTAC
65 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* * *
15927060 AGGTTTGCTGTCAGTAGCCATTAAAGTGTCTAAAATGGGACACTTTTTTGAAATGGTCACCAAAA
130 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGACACTTTTTTCAAATGGTCA-CAAAA
* * ** * * * *
15927125 TGTTTTACTGTTGGAGTTTTTAGCTGA-ATTTTTTATGCATGCCAAAAAAAATACAAGGATCACA
194 TCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACG
* ** * ***
15927189 TCTACCAAGTTTGGGGCCAAAAATTTTTTCGAAAATTTTTTTAAAAAATCCCGAACCGTAAAAAG
259 TCTACCAAGTTTGGGGCC-AAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG
** * * * *
15927254 TTTCAAAAATCATGAAAAATAGAAAATGAGTCATCTTGCCATAAAACTTCACGTGAAGGCTTAAA
323 TTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* *
15927319 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTTCC
388 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCACTGGCATGCAGAAATATGAAGATGTGCC
* *
15927384 TAAACCCACCTACCACCCTATCTATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC
453 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG-CAGCGTAGTGC
* * * * *
15927449 CCGCCCGCCTGCCCGCCCGTTCGTTTTGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCT
517 CAGCCCGCCCG-CCG-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * * *
15927514 AAGATCGGACCAGACCCAGGGTTGTGGCAGCACATGCTGGGCTCGAGCCTGTGCTGGTGCCGCA-
580 AAGATCAGACCGGACCGAGGGTTGTGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
* * * * * * *
15927578 TTTTCCTCGCCAGGGCACCATCGCCAGAGCATCGCCGGAGAACCTGATCGACGACACTAG-GGTT
645 TTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTAGCGGTT
*
15927642 CCGGTG
710 CCGATG
* * * * * * ** *
15927648 ATCGGGGTGGCCGGAGGGTCTACGCGCATGATATGCAATCTGTGCTGGTACTTGGCCCGTATATT
1 ATCGGGGGGGCCGGGGGGTGTGCGCACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATT
* *
15927713 GGCCCCCTATCCCTCACCAAACCAT-GAGAACTCACACCCCCTTAAAGAGCATTTGGGATTTTAC
66 GGCCCCCTATCCCTCATCAAACC-TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* * *
15927777 AAGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAATGGGGACACTTTTTCCAAATGGTCACAAAA
130 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGACACTTTTTTCAAATGGTCACAAAA
* * * * *
15927842 TCTTTTACACTTCGAGTATTTAGCTGATTTTTTTTGTGCATGCCAACAAAAGTTCAAGGATCACG
194 TCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACG
* * *
15927907 TCTACCAAGTTTTGGGCCAAAA-TGCCTGCCGAAAAAATTTTAAAAAATCCCGAA-CGATAAAAA
259 TCTACCAAGTTTGGGGCCAAAACT-CCTTCCAAAAAAATTTTAAAAAATCCCGAACCG-TAAAAA
* * * * *
15927970 GTTTGGAAAATCATGAAAAATAAAAAATGAGTCGACTTGCCATGCAACTTCACGTGAAGGCTTAA
322 GTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
*
15928035 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCACTGGCATGTAGAAATATGAAGATGTGC
387 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCACTGGCATGCAGAAATATGAAGATGTGC
* *
15928100 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGACGTAGTG
452 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCAG-CGTAGTG
* * ** *
15928165 CCAGCCCGCCCG-C-CCGCTCGTTTCGTTGATTGGCTTACTCATACGGAGTCCATTCCCAGTCTA
516 CCAGCCCGCCCGCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* **
15928228 AGATCAGACCGGACCGAGGGTTG-CAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATAT
581 AGATCAGACCGGACCGAGGGTTGTGA-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
** * * *
15928292 TTTTCTTCGTCGGGGTGCCATCACCTGAGCATCGCCGGAGAACCTGACCGACGGC-TTTGCGGTT
645 TTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTAGCGGTT
*
15928356 TCGATG
710 CCGATG
15928362 ATCGGGGGGGCCGGGGGGTGTGCGCACATGA-AGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
1 ATCGGGGGGGCCGGGGGGTGTGCGCACATGATA-TGCGATGGGTGCTGGTACTTGGCCCTTATAT
* * * *
15928426 TGGCCTCCTATCCCCCATCAAACCTCGAGAACTCCCACCCCCTTAAAGAGCATTTCAGATTTTAC
65 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* *
15928491 AGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGAGACACTTTTTTCAAAAGGTCACAAAA
130 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG-GACACTTTTTTCAAATGGTCACAAAA
* * * *
15928556 TCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATAAAAGGATCACG
194 TCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACG
** *
15928621 TCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGT
259 TCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGT
* *
15928686 TTTGAAAATCATGAAAATTAGAAAACGAGTCGTCTTGCCATTAAACTTCACGTGAAGGCTTAAGG
324 TTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
*
15928751 GATCATTGTATGAATTTACAAGCCATAAAAATGGCACTGGCATGCAGAAATATGAAGATGTGCCT
389 GACCATTGTATGAATTTACAAGCCATAAAAATGGCACTGGCATGCAGAAATATGAAGATGTGCCT
* * *
15928816 AAACCCACCTACCACCCCATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCTAGTGTAGTGCC
454 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC-AGCGTAGTGCC
** ** *
15928881 TTCCCGCCCGCCTGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACAAAGTTCATTCCAAGTCTA
518 AGCCCGCCCGCC-GC-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* *
15928946 AGATCAGACTGGACCGAGGGTTGTGACAGCACATACTGGGCTCGGGCATGTGCTGGTGCCGCATT
581 AGATCAGACCGGACCGAGGGTTGTGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
* * * *
15929011 TTTCTTTGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACTGGCGGCATTAG-GGTTC
646 TTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTAGCGGTTC
*
15929075 CGACG
711 CGATG
*
15929080 ATCGGGGGGGCCGAGGGGGGTGTGCGCACATGATATGCGAT-GGTGCTGGTACTGGGCCCTTATA
1 ATCGGGGGGGCC--GGGGGGTGTGCGCACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATA
* * * *
15929144 TTGGCCCCCTATCCCTCATCAAACGTCAAGAACTCACACCCCCTTAAGGAGCAATTGAGATTTTA
64 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* * * *
15929209 TAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAATTAGGGACACTTTTTTTAAATGGTCACAAA
129 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGACACTTTTTTCAAATGGTCACAAA
*
15929274 ATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAAAAAAAATTCAAGGATCAC
193 ATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAC
* * * * ** *
15929339 CTCTACCCAGTTTGGGGCAAAAAATCCTTCCAAAAAAATTTTAAAAAATCTTGAACCGTAAAAAT
258 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG
* * *
15929404 TTTTGAAAATCGTGAAAAATAGAAAACGA-TCGTCTTGGCATGAAACTTCACGCGAAGGCTTAAG
323 TTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * *
15929468 GGACCATTGTATGAATTTACAAGCCATAAAAATGACATTGGCATGCAGAAATATGAAGATGTGTC
388 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCACTGGCATGCAGAAATATGAAGATGTGCC
* * *
15929533 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGTCGGCGTACTGC
453 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG-CAGCGTAGTG-
* * * *
15929598 CCA-CCCGCACGCTTGGCCGCTCATTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
516 CCAGCCCGCCCGC--CGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
** ** * *
15929662 TAAGATTGGATTGGACTGAGGGTTGTGGCAGCA
579 TAAGATCAGACCGGACCGAGGGTTGTGACAGCA
15929695 GGATCGGCAG
Statistics
Matches: 3040, Mismatches: 367, Indels: 160
0.85 0.10 0.04
Matches are distributed among these distances:
705 114 0.04
706 1 0.00
707 2 0.00
708 1 0.00
709 1 0.00
710 2 0.00
711 3 0.00
712 22 0.01
713 288 0.09
714 767 0.25
715 9 0.00
716 83 0.03
717 349 0.11
718 463 0.15
719 288 0.09
720 33 0.01
721 1 0.00
723 5 0.00
725 71 0.02
726 323 0.11
727 85 0.03
728 2 0.00
729 2 0.00
730 1 0.00
731 1 0.00
732 3 0.00
733 1 0.00
734 2 0.00
735 15 0.00
737 3 0.00
739 99 0.03
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (715 bp):
ATCGGGGGGGCCGGGGGGTGTGCGCACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATT
GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGACACTTTTTTCAAATGGTCACAAAATC
TTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTC
TACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
TGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
CCATTGTATGAATTTACAAGCCATAAAAATGGCACTGGCATGCAGAAATATGAAGATGTGCCTAA
ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCAGCGTAGTGCCAGC
CCGCCCGCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
AGACCGGACCGAGGGTTGTGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
TCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTAGCGGTTCCGATG
Found at i:15930807 original size:709 final size:713
Alignment explanation
Indices: 15929774--15931269 Score: 2154
Period size: 709 Copynumber: 2.1 Consensus size: 713
15929764 AGCGCCCGGA
* * *
15929774 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCG
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCG
* * * * *
15929839 AGGGTTGCGGCAGCAAATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTGTTCTTCACCAGGGCA
66 AGGGTTACAGCAGCAAATACTGGGCTCAGGCATGTGCTGGTGCCACATTGTTCTTAACCAGGGCA
* * *
15929904 CCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGAGGCC
131 CCATCGCCGGAGCATCGCCAGAGAACCTGACAGGCGGCATTGGGGTTCCGACGATCGAGGAGGCC
* *
15929969 GGGGGTTGTGCGCACATGATGTGAGATGAGTGGTGGTACTGGGCCCTTATATTGGCCCCCTATCC
196 GGGGGGTGTGCGCACATGATGTGAGATGAGTGCTGGTACTGGGCCCTTATATTGGCCCCCTATCC
* *
15930034 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGTCA
261 CTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCA
* * * *
15930099 GTAGTCATTAAAGTATTTGAAATAGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
326 GTAGCCATTAAAGTATCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTC
** *
15930164 GAGTTTTTAGCTGATTTTTTTTATGCATGCCAAA-AAAAATTTAAGGATCCCGTCTACCCA-GTT
391 GAGTTTTTAGCTGATTTTTTTTATGCATG-CAAACAAAAATACAAGGATCACGTCTA-CCAGGTT
* * * *
15930227 TGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAAT-CTCGAACTGCAAAAATTTTCAAAAATC
454 TGGGGCCAAAAATCATTCCGAAAAAATTTTAAAAAATCCT-GAACCGCAAAAAGTTTCAAAAATC
* * *
15930291 GTGAAAAATAGAAAACGAGTCGTCTTG-GCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
518 GTGAAAAATAAAAAACGAGTCATCTTGTG-ATGAAACTTCACGTGAAAGCTTAAGGGACCATTGT
*
15930355 ATGAATTTACAAGCCATAAAAATGACATTGGCAT-GCAGAAATATGAAGATGTGCCTAAACCCAC
582 ATGAATTTACAAGCCATAAAAATGACATTGGC-TCACAGAAATATGAAGATGTGCCTAAACCCAC
* * * *
15930419 CTTCCACCCTATCGATCCACGGCTTGCGCATCCC-GC-CGGCGTAG-T-GC-TCG-CCTGCCCGC
646 CTACCACCCTATCGATCCACGACTTGCGCATCCCAGCTC-GC-TAGCTAGCGTAGACCCGCCCGC
15930478 CCGCC
709 CCGCC
* * * *
15930483 CGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCGCAGTCAAAGATTGGATCGGACCG
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCG
* * * ***
15930548 AGGGTTACAGCAGCATATACTGGGCT-AGGGCTTGTGCTGGTGCCACATTTTTCTTAATGGGGGC
66 AGGGTTACAGCAGCAAATACTGGGCTCA-GGCATGTGCTGGTGCCACATTGTTCTTAACCAGGGC
* * * *
15930612 ACCATCGCCGGAGCATCGCCAGAGAACCTGACAGGCGGCGTTGGGGTTCCGGCGATCGGGGGGGC
130 ACCATCGCCGGAGCATCGCCAGAGAACCTGACAGGCGGCATTGGGGTTCCGACGATCGAGGAGGC
* * * * *
15930677 CGTGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCTTAT
195 CG-GGGGGTGTGCGCACATGATGTGAGATGAGTGCTGGTACTGGGCCCTTATATTGGCCCCCTAT
*
15930742 CCCTCATCAAATCTCAAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGT
259 CCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGT
* * *
15930806 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCTCAAAATCTTATACACT
324 CAGTAGCCATTAAAGTATCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACT
* *
15930871 TCGAGTTTTTAGCTGATTTTTTTTGTGCATGCAAACAAAAATACAAGGATCATGTCTACCAGGTT
389 TCGAGTTTTTAGCTGATTTTTTTTATGCATGCAAACAAAAATACAAGGATCACGTCTACCAGGTT
* * *
15930936 TGGGGCCAAAACTCATTCCGAAACAATTTTCAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCG
454 TGGGGCCAAAAATCATTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCG
*
15931001 TGAAAAATAAAAAACGAGTCATCTTGTGATGAAACTTCATGTGAAAGCTTAAGGGACCATTGTAT
519 TGAAAAATAAAAAACGAGTCATCTTGTGATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTAT
* *
15931066 GAATTTTCAAGCCATAAAAATGGCATTGGCTCACAGAAATATGAAGATGTGCCTAAACCCACCTA
584 GAATTTACAAGCCATAAAAATGACATTGGCTCACAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * *
15931131 CCACCCTATCGATCCACGACTTGCGCATCCCATCTCTCTTGCTAGCGTAGTACCCGGCCGCCCGC
649 CCACCCTATCGATCCACGACTTGCGCATCCCAGCTCGCTAGCTAGCGTAG-ACCCGCCCGCCCGC
15931196 C
713 C
* * * *
15931197 CGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAACCG
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCG
15931262 AGGGTTAC
66 AGGGTTAC
15931270 GGTAGCAAGA
Statistics
Matches: 696, Mismatches: 77, Indels: 23
0.87 0.10 0.03
Matches are distributed among these distances:
708 9 0.01
709 520 0.75
710 85 0.12
711 3 0.00
712 2 0.00
714 77 0.11
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.26
Consensus pattern (713 bp):
CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCG
AGGGTTACAGCAGCAAATACTGGGCTCAGGCATGTGCTGGTGCCACATTGTTCTTAACCAGGGCA
CCATCGCCGGAGCATCGCCAGAGAACCTGACAGGCGGCATTGGGGTTCCGACGATCGAGGAGGCC
GGGGGGTGTGCGCACATGATGTGAGATGAGTGCTGGTACTGGGCCCTTATATTGGCCCCCTATCC
CTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCA
GTAGCCATTAAAGTATCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTC
GAGTTTTTAGCTGATTTTTTTTATGCATGCAAACAAAAATACAAGGATCACGTCTACCAGGTTTG
GGGCCAAAAATCATTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTG
AAAAATAAAAAACGAGTCATCTTGTGATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGA
ATTTACAAGCCATAAAAATGACATTGGCTCACAGAAATATGAAGATGTGCCTAAACCCACCTACC
ACCCTATCGATCCACGACTTGCGCATCCCAGCTCGCTAGCTAGCGTAGACCCGCCCGCCCGCC
Found at i:15932298 original size:26 final size:26
Alignment explanation
Indices: 15932269--15932321 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15932259 GTTGACTTAC
*
15932269 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
15932295 GCATGCAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15932321 G
1 G
15932322 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15932718 original size:900 final size:892
Alignment explanation
Indices: 15930507--15933031 Score: 3413
Period size: 885 Copynumber: 2.8 Consensus size: 892
15930497 GTTGGCTTAG
* * * * * * *
15930507 GCATACGGAGTTCATTCGCAGTCAAAGATTGGATCGGACCGAGGGTTACAGCAGCATATACTGGG
1 GCATACAGAGTTCATTCTCAGTC-AAGATTGGACCGGACCGAGGGTTACGGTAGCACATGCTGGG
* * *
15930572 CTAGGGCTTGTGCTGGTGCCACATTTTTCTTAATGGGGGCACCATCGCCGGAGCATCGCC-AGAG
65 CTCGGGCATGTGCTGGTGCCACATTTTTCTT-A-CGGGGCACCATCG--GGAGCATCGCCGA-AG
* * * *
15930636 AACCTGACAGGCGGCGTTGGGGTTCCGGCGATCGGGGGGGCCGTGGGGGTGTGCGCACATGATGT
125 AACCTGACCGGCGGCATT-GGGTTTCGACGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGT
* * * *
15930701 GCGATGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCTTATCCCTCATCAAATCTCAAGAACTCA
188 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
15930766 CA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAA
253 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAA
* *
15930830 TGGGGACACTTTTTTCAAATGGTCTCAAAATCTTATACACTTCGAGTTTTTAGCTGATTTTTTTT
318 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-TTTTTTT
* * *
15930895 GTGCATG-CAAACAAAAATACAAGGATCATGTCTACCAGGTTTGGGGCCAAAACT-CATTCCGAA
382 GTGCATGCCAAAAAAAAATTCAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCA-TCCGAA
* * *
15930958 ACAATTTTCAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCAT
446 A-AATTTTCAAAAATCCTGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGT
** * * *
15931023 CTTGTGATGAAACTTCATGTGAAAGCTTAAGGGACCATTGTATGAATTTTCAAGCCATAAAAATG
510 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
15931088 GCATTGGCTCACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTT
575 GCATTGGCACACAGAAATATGAAGATGTGCCTAAA-CCACCTACCACCCTATCGATCCACGGCTT
* * * *
15931153 GCGCATCCCATCTCTCTTGCTAGCGTAGTACCCGGCCGCCCGCCCGCTCG-T-TTT-GTCGGTTG
639 GCGCATCCCGTCTCTC-TGC-GGCGTAGTGCCCGCCCGCCCGCCCGCTCGCTGTTTCGTCGGTTG
* *
15931215 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAACCGAGGGTTACGGTAGCAAGA
702 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAACCAAGGGTTACGGCAGCAAGA
* * * *
15931280 TCGGCAGCACGCAAGAGTGGGACCCGGTCAATCCCCAGCTTGCGCATCCCACCCCTCTGGCCGAC
767 TCAGCAGCACGCAAGAGGGGGACCCGATCAATCCCCAGCTTGCGCATCCCACCCCTCAGGCCGAC
* *
15931345 TGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCGTAGGAGTTCATTCCCAATCTAA
832 TGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTACGCATAGGAGTTCATTCCCAATCTAA
* * *
15931406 GCATACAGAGTTCATTCTCAGTCATAGATCGGACTGGACCGAGGGTTACGGTAGCACATGATGGG
1 GCATACAGAGTTCATTCTCAGTCA-AGATTGGACCGGACCGAGGGTTACGGTAGCACATGCTGGG
* * * *
15931471 CTCGGGCATGTGCTGGGGCCATATTTTTCTT-C---G-----TC-GGAGCATCACCGGAGAACCT
65 CTCGGGCATGTGCTGGTGCCACATTTTTCTTACGGGGCACCATCGGGAGCATCGCCGAAGAACCT
* * * *
15931526 AACCGGCGGCATTGGGGTTCCATCGATCGGGGGGGCCGGGGGGTGTGCGCACACGATGTGCGATG
130 GACCGGCGGCATTGGGTTTCGA-CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
*
15931591 GGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
194 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
15931656 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-TTGAAATGGGG
259 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTT-AAATGGGG
* *
15931720 ACACTTTTTTCAAACGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
323 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATTTTTTTGTGCA
* * * * * **
15931785 TGCC-AATAACAA-TAAAGGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCGGAAAAAAA
387 TGCCAAAAAAAAATTCAA-GGATCATGTCTACCAAGTTTGGGGCCAAAACTCCATCCGAAAAATT
* * ** * *
15931848 TTGAGAAAATCCTGAAACGCAAAAAGTTTTAAAAATCAAGAAAAATAGAAAACAAGTCGTCTAGC
451 TTCA-AAAATCCTGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
*
15931913 CATGAAACTTCACGTGAAGGCTTAAGGTACCATTGTATGAATTTACAAGCCATAAAAATGG-ATT
515 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA-T
15931977 TGGCACACAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGC
579 TGGCACACAGAAATATGAAGATGTGCCTAAACC-ACCTACCACCCTATCGATCCACGGCTTGCGC
* * *
15932042 ATCCCGTCTCTCTGGTCGGCGTAATGCGCGCCCGCCCGCCCGCTCGCTCGTTTCATCGGTTGGCT
643 ATCCCGTCTCTCT-G-CGGCGTAGTGCCCGCCCGCCCGCCCGCTCGCT-GTTTCGTCGGTTGGCT
* * * * *
15932107 TAGGCATACGGAGTTCATTCCCAGTCTAAGATC-AGACTGGATCAAGGGTTGCGGCAGCAGGATC
705 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGAACCAAGGGTTACGGCAGCAAGATC
** * * *
15932171 AGCAGCACG-TGGAGGGGGACCCGATCGATCCCCAGCTTGCGCATCCCACCCTTCAGGTCGACTG
769 AGCAGCACGCAAGAGGGGGACCCGATCAATCCCCAGCTTGCGCATCCCACCCCTCAGGCCGACTG
*
15932235 AGCGCCCGTACGCTCGTTTCGTGGGTTGACTTACGCATACGGAGTTCATTCCCAGTCTAA
834 AGCGCCCGTACGCTCGTTTCGTGGGTTGACTTACGCATA-GGAGTTCATTCCCAATCTAA
* *
15932295 GCATGCAGAGTTCATTCTCAGTCTAAGATTGGACCGGACCGAGGGTTATGGTAGCACATGCTGGG
1 GCATACAGAGTTCATTCTCAGTC-AAGATTGGACCGGACCGAGGGTTACGGTAGCACATGCTGGG
15932360 CTCGGGCATGTGCTGGTGCC-CATTTTTCTTCACCGGGGCACCATCGTGGAGCATCGCCGAAGAA
65 CTCGGGCATGTGCTGGTGCCACATTTTTCTT-A-CGGGGCACCATCG-GGAGCATCGCCGAAGAA
* * * * * * *
15932424 CCTGACCGACAGCTTTGCAGTTTCGACGATCGGGGGGGTC-AGGGGTGTGCACACATGATGTGCG
127 CCTGACCGGCGGCATTG-GGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
*
15932488 ATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
191 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * * **
15932553 CCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTACCAGTGGCCATTAAAGTGTCTTAGCTGG
256 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGG
*
15932618 GGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTCGAGTTTTTAGCTGATTTTTTTGTGC
321 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTGTGC
* * * *
15932683 ATGCCAAAAAAAAATTCAAGGAGCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAATT
386 ATGCCAAAAAAAAATTCAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCATCCGAAAAATT
* ** ** * *
15932748 TTTAAAAAAGCTCGAACCGCAAAACTTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGG
451 TTCAAAAATCCT-GAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
*
15932813 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAATGGCATT
515 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
*
15932878 GGCACGCAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACGGCTTGCGCA
580 GGCACACAGAAATATGAAGATGTGCCTAAAC-CACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * *
15932943 TCCCG-----C--CGGCATAGTGCTCGCCCGCCCGCCTGCCCGCTTGTTTCGTCGGTTGGCTTAG
644 TCCCGTCTCTCTGCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGC-TGTTTCGTCGGTTGGCTTAG
15933001 GCATACGGAGTTCATTCCCAGTCTAAGATCG
708 GCATACGGAGTTCATTCCCAGTCTAAGATCG
15933032 GATCGGACCG
Statistics
Matches: 1434, Mismatches: 149, Indels: 93
0.86 0.09 0.06
Matches are distributed among these distances:
884 99 0.07
885 412 0.29
886 6 0.00
888 99 0.07
889 169 0.12
890 1 0.00
891 75 0.05
892 1 0.00
893 1 0.00
894 1 0.00
895 1 0.00
898 1 0.00
899 105 0.07
900 410 0.29
901 48 0.03
902 5 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (892 bp):
GCATACAGAGTTCATTCTCAGTCAAGATTGGACCGGACCGAGGGTTACGGTAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCACATTTTTCTTACGGGGCACCATCGGGAGCATCGCCGAAGAACCTG
ACCGGCGGCATTGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACA
CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTGTGCATGCC
AAAAAAAAATTCAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCATCCGAAAAATTTTCAA
AAATCCTGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA
CAGAAATATGAAGATGTGCCTAAACCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
TCTCTGCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGCTGTTTCGTCGGTTGGCTTAGGCATACGG
AGTTCATTCCCAGTCTAAGATCGAACCGAACCAAGGGTTACGGCAGCAAGATCAGCAGCACGCAA
GAGGGGGACCCGATCAATCCCCAGCTTGCGCATCCCACCCCTCAGGCCGACTGAGCGCCCGTACG
CTCGTTTCGTGGGTTGACTTACGCATAGGAGTTCATTCCCAATCTAA
Found at i:15934056 original size:698 final size:703
Alignment explanation
Indices: 15932302--15935918 Score: 4352
Period size: 738 Copynumber: 5.1 Consensus size: 703
15932292 TAAGCATGCA
* * ** **
15932302 GAGTTCATTCTCAGTCTAAGATTGGACCGGACCGAGGGTTATGGTAGCACATGCTGGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGC
* * ** *
15932367 ATGTGCTGGTGCC-CATTTTTCTTCACCGGGGCACCATCGTGGAGCATCGCCGAAGAACCTGACC
66 ATGTGCTGGTGCCGTATTTTTCTT---C---G-----TC--GG-GCATCGCCGCATCACCTGAAC
* * * * * * *
15932431 GACAGCTTTGCAGTTTCGACGATCGGGGGGGTC-AGGGGTGTGCACACATGATGTGCGATGGGTG
117 GACGGCTTTGCGGTTCCGATGATCGGAGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTG
*
15932495 CTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
182 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * * * **
15932560 AAGAGCATTTCAGATTTTACAGGTTTGCTACCAGTGGCCATTAAAGTGTCTTAGCTGGGGACACT
247 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* *
15932625 TTTTTCAAATGGTCACAAAATATTGTACACTTCGAGTTTTTAGCTG-ATTTTTTTGTGCATGCCA
312 TTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-
* * * * *
15932689 AAAAAAAATTCAAGGAGCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAATTTTTAAA
376 AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAA
* ** ** * *
15932754 AAAGCTCGAACCGCAAAACTTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGGCATGAA
441 AAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
*
15932819 ACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAATGGCATTGGCACG
506 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
*
15932884 CAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACGGCTTGCGCA-----T
571 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * * * *
15932944 C-C-C--GCCGGCATAGTGCTCGCCCGCCCGCCTGCCCGCTTGTTTCGTCGGTTGGCTTAGGCAT
636 CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCATCGGTTGGCTTAGGCAT
15933005 ACG
701 ACG
* *
15933008 GAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTTCGACAGCACATG-TGGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGC
* *
15933072 ATGTCCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGCCAGGGCATCACCGTAGAACCTGAC
66 ATGTGCTGGTGCCGTATTTTTCTTCGTC-GGG---CATCGCC---GCATCACC-T-GAA-C-GA-
* * * ** * *
15933137 CGGCGACATTGGGGTT-C--TG-GC-GATCGG--GAGGGGTG-GAAGCACATGATGTGCGATGGG
119 C-G-G-CTTTGCGGTTCCGATGATCGGAGGGGCCGGGGGGTGTGCA-CACATGATGTGCGATGGG
15933194 TGCTGGTACTTGGCCCTTATATT-GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
180 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* *
15933258 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTGGCCATTAAAGTGTCTTAAATGGGGACA
245 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * *
15933323 CTTTTTTCAAAAGGTCACAAAATATTGTACACTTTGATTTTTTAGCTGAATTTTTTTGTGCATGG
310 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCAT-G
* *
15933388 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGTCCAAAACTCCTTCTGAAAAAATTTTA
374 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTA
* * * * *
15933453 AAAAATCCCGAACCGCAAAAAGTTTGAAAAATTATGAAAAATAGAAAACGAGTCGTCATGGCATG
439 AAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
15933518 -AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
504 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * *
15933582 CGCAGAAATATGAAGATGTTCCTAAACCCACCAACCACCCTATGGATCCACGGCTTGCGCATCCC
569 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * *
15933647 GTCCCTCTGGCCGGCGTAGTGCCC-CCCTGCCCGCCCGCTCGCTCGTCTCATCGGCTGGCTTAGG
634 GTCTCTCTGGCCGGCGTAGTGCCCGCCC-GCCCGCCCGCTCGCTCGTTTCATCGGTTGGCTTAGG
15933711 CATACG
698 CATACG
* * *
15933717 AAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGACAGCACATGCTGGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGC
*
15933782 ATGTGCTGGTGCCGTATTTTTCTTCGTCGGG-GT-G-C-CATCACCTGAACGACGGCTTTGCGGT
66 ATGTGCTGGTGCCGTATTTTTCTTCGTCGGGCATCGCCGCATCACCTGAACGACGGCTTTGCGGT
* *
15933843 TCCGATGATCGGAGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTACTTGTACTTGGCCC
131 TCCGATGATCGGAGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* *
15933908 TTATATTGG-CCCCTATCCCTCATCAAGCCTCGAGAACTCACACCCCCTCAAAGAGCATTTGAGA
196 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* * * *
15933972 TTTTATAGGCTTGCTGCCAGTAGCAATTAAAATGTCTGAAATGGGGACACTTTTTTCAAATGGTC
261 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* *
15934037 ACAAAATCTTGTACACTTTGACTTTTTAGCTGATTTTTTTTGTGCATGCCAAAAAAAAATACAAG
326 ACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AAAAAAAATACAAG
* * * * *
15934102 GATCATGTCTACCAAGTTTGGGGCCAACACTCCTACTGAAAAAATTTTAAAAAATCTCGAGCCGT
390 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGAACCGC
* * *
15934167 AAAAAGTTTTAAAAATCATGAAAAAGAGAAAACGAGTCGTATTGCCATGAAACTTCACGTGAAGG
455 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* *
15934232 CTTAAGGGACCATTGTATGAATTTACCAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
520 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGA
* *
15934297 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGTATCCCGTCTCTCTGGCCAGCG
585 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
* *
15934362 TAGTGCCCGCCCGCCCGTCTGCCCGCTCGTTCGTTTCGA-CGGTTGGCTTAGGCATATG
650 TAGTGCCCGCCCG-CC--C-GCCCGCTCGCTCGTTTC-ATCGGTTGGCTTAGGCATACG
* * * * * *
15934420 GTGTCCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTGCGGCAGCACATGCTAGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGC
* ** * *
15934485 ATGTGCTGGTGCCGTATTTTTCTTCACTGCGGCACCATCGTCGAGCATCGCCGGAGAATCTGACC
66 ATGTGCTGGTGCCGTATTTTTC-T---T-C-G-----TCG--G-GCATCGCCGCATCACCTGAAC
* * * ** * *
15934550 GACGGCATTGGGGTTCAGGCGATCGGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
117 GACGGCTTTGCGGTTCCGATGATC-GGAGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGT
* ** *
15934615 GCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCATGCTCCCTT
181 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
*
15934680 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAATGGGGACAC
246 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * *
15934745 TTTTTCCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCC
311 TTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * * * *
15934810 AACAAAAATACAAGGATCACGTTTTCCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAA
376 AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAA
* * ** *
15934875 AAATCTTGAATCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
441 AAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * * * *
15934940 ATTTCACATGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATCAAAATGGCATTGGCAAG
506 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* *
15935005 TAGAAATATGAAGATGTGCCTAAACGCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
571 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* *
15935070 CTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGCCCGCTCGTTTCGCCAGTTGGCTTAGGCATACGG
636 CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCG---C-TC-G-T---TT---CAT-C-G
** * *
15935135 AGTTCATTCCTAGTCTAAGCATATG
687 -G-T--TGGC---T-TAGGCATACG
* * * * ** *
15935160 GAGTTCATTCCCAGTATAAGATCGGACC-GACCGAGGGTTGCG-CAGCAAATACTGTGCTCCAGT
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGC
* * * * *
15935223 ATGTGCTAGTTCCGCATTTTTCTTCGTCTGGGCACCATCGCCGGAGCATCGCCGGAGAACCAGAC
66 ATGTGCTGGTGCCGTATTTTTCTTCGTC-GGG---CATCGCC---GCATCACC--TGAA-C-GA-
* * *
15935288 CGGCGGCATTT-AGGTTCCGGTGATCGGAGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
119 ---CGGC-TTTGCGGTTCCGATGATCGGAGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGG
** * *
15935352 TTATGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCGTCAAACCTCGAGAAATCACACCCCCT
180 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * * * *
15935417 TAAATAGCATTTGAGATTTTCCCGGTTTGCTACCAGTAGCCATTAAAGTGTTTGAAATGGGGACA
245 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* *
15935482 CTTTTTTCAAATGGTCATAAAATCTTGTACACTTTGGGTTTTTAGCTGAATTTTTTTGTGCATGC
310 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * * *
15935547 CAATAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAAATCTTTGC-GAAAAAATTTTA
375 CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CTGAAAAAATTTTA
* *
15935611 AAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
439 AAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
15935676 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACCAGCCATAAAAATGGCATTGGCA
504 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* *
15935741 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGTATCCC
569 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * * *
15935806 GTCTCTCTAGCCGGCGTAGTGCCCGCCCGCTCGCCCG-TCCGCTCATTTCATAGATTGGCTTAGG
634 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCT-CGCTCGTTTCATCGGTTGGCTTAGG
*
15935870 TATACG
698 CATACG
* * * * *
15935876 GTGTTCATTCCCAATCTAAGATCAGACTGGACTGAGGGTTGCG
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCG
15935919 GCAACAGGAT
Statistics
Matches: 2529, Mismatches: 273, Indels: 207
0.84 0.09 0.07
Matches are distributed among these distances:
691 8 0.00
692 2 0.00
693 2 0.00
694 5 0.00
695 5 0.00
696 12 0.00
697 6 0.00
698 316 0.12
699 161 0.06
700 276 0.11
701 175 0.07
702 8 0.00
703 115 0.05
704 5 0.00
705 26 0.01
706 58 0.02
707 9 0.00
708 4 0.00
709 101 0.04
710 37 0.01
714 3 0.00
716 31 0.01
717 15 0.01
718 10 0.00
719 2 0.00
720 3 0.00
721 27 0.01
722 322 0.13
723 156 0.06
724 2 0.00
725 1 0.00
726 4 0.00
727 4 0.00
728 8 0.00
729 3 0.00
730 1 0.00
731 4 0.00
732 3 0.00
733 4 0.00
734 4 0.00
735 3 0.00
736 2 0.00
737 2 0.00
738 519 0.21
739 30 0.01
740 35 0.01
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (703 bp):
GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGC
ATGTGCTGGTGCCGTATTTTTCTTCGTCGGGCATCGCCGCATCACCTGAACGACGGCTTTGCGGT
TCCGATGATCGGAGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCC
TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
ACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGG
ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGAACCGCA
AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGAT
GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT
AGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCATCGGTTGGCTTAGGCATACG
Found at i:15935163 original size:26 final size:26
Alignment explanation
Indices: 15935127--15935179 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15935117 GTTGGCTTAG
* *
15935127 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTATAA
*
15935153 GCATATGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCATTCCCAGTATAA
15935179 G
1 G
15935180 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTATAA
Found at i:15936054 original size:26 final size:24
Alignment explanation
Indices: 15936018--15936067 Score: 82
Period size: 26 Copynumber: 2.0 Consensus size: 24
15936008 GCGTATGGAG
15936018 TTCATTCCCAGTCTAAGCATACGGAA
1 TTCATTCCCAGTCTAAG-AT-CGGAA
15936044 TTCATTCCCAGTCTAAGATCGGAA
1 TTCATTCCCAGTCTAAGATCGGAA
15936068 CGGACCAGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 5 0.21
25 2 0.08
26 17 0.71
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (24 bp):
TTCATTCCCAGTCTAAGATCGGAA
Found at i:15936906 original size:26 final size:26
Alignment explanation
Indices: 15936870--15936922 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15936860 GTTGACTTAG
15936870 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
*
15936896 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
15936922 G
1 G
15936923 ATCGGACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:15938292 original size:904 final size:887
Alignment explanation
Indices: 15936087--15938524 Score: 3219
Period size: 885 Copynumber: 2.7 Consensus size: 887
15936077 ATTCATTCCC
* * * *
15936087 ATTTTTCTTCGTCCGGGCACCATCGTCGAAACATCACCGGAGAACCTGATCGACGGCATTGGGGT
1 ATTTTTCTTCGTCGGGGCACCATCG-CG--AC-TCGCCGGAGAACCTGACCGACGACATTGGGGT
* * * *
15936152 TCCGGCGATCAGGGGGGCC-GAGGGGGTGTGCACACATGATGTGTGATGGGTGCTGGTACTTGGC
62 TCCGACGATCA-GGGGCCCGGA-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
*
15936216 CCTTATATTGGCCCCCTATCCCTCATGAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGA
125 CCTTATATTGG-CCCCTATCCCTCATCAAACCTCAA-AACTCACACCCCCTTAAAGAGCATTTGA
*
15936281 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGG
188 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
** * * * *
15936346 TCACAAAATCTTGTACGGTTCAAGTTTTTAGCTGAATTTTTTTATGCACGCCAACAAAAATACAA
253 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAA
* * * *
15936411 GGATCACGTCTACCACGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATCTCGAACAG
318 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCG
* *
15936476 CAAAAAGTTTCAAAAATTGTGAAAAATAGAAAAAAAGTCGTCTTGCCATGAAACTTAACGTGAAG
383 CAAAAAGTTTCAAAAATCGTGAAAAATA-AAAAAGAGTCGTCTTGCCATGAAACTTAACGTGAAG
* *
15936541 GCTTCAGGGACCATTATATCAATTTACAAGCCATAAAAATGGCATTGGCAAGTAGAAATATGAAG
447 GCTTAAGGGACCATTGTATCAATTTACAAGCCATAAAAATGGCATTGG-AAGTAGAAATATGAAG
** * *
15936606 AACTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTCGCCGGC
511 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTCGCCGGC
* * *
15936671 ATAGTGCCCGCCCGCTCGCTCGTTTAATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
576 ATAGTGCCCGCCCGCCCGCTCCTTTAATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* ** *
15936736 AGATCAGACCGGATTGAGGGTTGGGGCAGCAGGATCGACAGCACGTAGAGGGGGACCCAACCGAT
641 AGATCAGACCAGATCCAGGGTTGGGGCAGCAGGATCGACAGCACGTAGAAGGGGACCCAACCGAT
* * * *
15936801 CCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGAC
706 CCCTGACTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
* *
15936866 TTAGGCATACAAAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACC
771 TTAGGCACACAAAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGCACC
*
15936931 AAACCGAGGGTTACGACAGCACATGCTGGGGTCGGGCATGTGCTGGTGCCGT
836 AAACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGT
** * *
15936983 ATTTTTCTTCACCGGGG---CA--GC-A-TCGTCGGAGATCCTGACCGACGACATTGGGGTTCCG
1 ATTTTTCTTCGTCGGGGCACCATCGCGACTCGCCGGAGAACCTGACCGACGACATTGGGGTTCCG
* *
15937041 ACGATC-GGGTGCATCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
66 ACGATCAGGG-GC-CCGGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
*
15937105 ATATTGGTCCCCTATCCCTCATCAAACCTCTAGAACTCACACCCCCTTAAAGAGCATTTGAGACT
129 ATATTGG-CCCCTATCCCTCATCAAACCTC-AAAACTCACACCCCCTTAAAGAGCATTTGAGA-T
* * *
15937170 TTT-CCGATTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
191 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* * *
15937234 CAAAATCTTGTACACTTTGGGTTTTTAGCT-AACTTTTTTTGTACATGCCAAAAAAAATACAAGG
256 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAAAAAAAATACAAGG
* * ** ** *
15937298 ATCGCGTCCACCAAGTTTGGAACCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCACA
320 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGCA
* * * *
15937363 AAAAGTTTCAAAAATCGTAAAAAATAAAAAATGGGTCATCTTGCCATGAAACTTCACGTGAAGGC
385 AAAAGTTTCAAAAATCGTGAAAAATAAAAAA-GAGTCGTCTTGCCATGAAACTTAACGTGAAGGC
* * * * *
15937428 TTAAGGGACCATTGTATTAATTTTCAAGCAATAAAAATGGCATTGGAATGTAGAATTATGAGGAT
449 TTAAGGGACCATTGTATCAATTTACAAGCCATAAAAATGGCATTGGAA-GTAGAAATATGAAGAT
* *
15937493 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCTGTCTCTCT-GACCGACG
513 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTCG-CCG--G
* **
15937557 TAGTACCCGTCCGCCCGCCCGCCCGCTCCTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCC
575 CA-TA---GT--GCCCGCCCGCCCGCTCCTTTAATCAGTTGGCTTAGGCATACGGAGTTCATTCC
** * * *
15937622 CAGTCTAAGATTGGACCAGA-CCATGGGTTGTGGTAGCAGGATCGACAGCACTTAGAAGGGGACC
634 CAGTCTAAGATCAGACCAGATCCA-GGGTTGGGGCAGCAGGATCGACAGCACGTAGAAGGGGACC
* *
15937686 CGATCGATCTCC-GACTTGCGCATCCCACCCCTCT-GCCTGACTGAGCGCCCGCACGCTCGTTTC
698 CAACCGATC-CCTGACTTGCGCATCCCACCCCTCTGGCC-GACTGAGCGCCCGCACGCTCGTTTC
* **
15937749 GTGGTTTGACTTAGGCACACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTA
761 GTGGGTTGACTTAGGCACACAAAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTA
* * * * * * *
15937814 AGATCGCATCGAACCGAGGGTTGCGGCATCATATGCTGGGCTCGGGCATGTGCTGGTGGCGT
826 AGATCGCACCAAACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGT
* *
15937876 ATTTTTTTTCGTAGGGGCACCATCGCCGGAGCGTCGCCGGAGAACCTGACCGACGACATTGGGGT
1 ATTTTTCTTCGTCGGGGCACCATCG-C-GA-C-TCGCCGGAGAACCTGACCGACGACATTGGGGT
* * *
15937941 TCCGATGATCAGGGGCCCGGAGGGGTGTGCGCACATGATGTGGGATGGTTGCTGGTACTTGGCCC
62 TCCGACGATCAGGGGCCCGGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* * *
15938006 TTATTTTGGCCCCTTTATCCCTCATCAAACCTCGAAAACTAACACCCCCTTAAAGTGCATTTGAG
127 TTATATTGGCCCC--TATCCCTCATCAAACCTC-AAAACTCACACCCCCTTAAAGAGCATTTGAG
* * *
15938071 ATTTTACAGGTTTCCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTGAAATGGT
189 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
15938136 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAG
254 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAG
* * * * *
15938201 GATCACGTCTACCAAGTTTGGGGCCAAAACGCCTTCTGACAAAATTTCAAAAAATCCCAAACCGT
319 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGC
** * * *
15938266 AAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTAACGTGAAGG
384 AAAAAGTTTCAAAAATCGTGAAAAATA-AAAAAGAGTCGTCTTGCCATGAAACTTAACGTGAAGG
*
15938331 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA-TGGCACA-TAGAAATATGAAG
448 CTTAAGGGACCATTGTATCAATTTACAAGCCATAAAAATGGCATTGG-A-AGTAGAAATATGAAG
* * * *
15938394 ATGTGCCTAAACCCACCTACCACCCTATCAATCCACAGCTTGCGCATCCCGTCTCTCTAGTCGGC
511 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTCGCCGGC
* ** * * * *
15938459 GA-AGT----GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCAAATCT
576 -ATAGTGCCCGCCCGCCCGCTCCTTTAATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
15938519 AAGATC
640 AAGATC
15938525 GAACCGAACC
Statistics
Matches: 1344, Mismatches: 157, Indels: 87
0.85 0.10 0.05
Matches are distributed among these distances:
883 3 0.00
884 11 0.01
885 463 0.34
886 6 0.00
887 3 0.00
888 2 0.00
890 1 0.00
891 58 0.04
892 4 0.00
893 280 0.21
894 2 0.00
896 16 0.01
897 2 0.00
898 1 0.00
899 1 0.00
900 1 0.00
901 2 0.00
902 5 0.00
903 127 0.09
904 346 0.26
905 10 0.01
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.26
Consensus pattern (887 bp):
ATTTTTCTTCGTCGGGGCACCATCGCGACTCGCCGGAGAACCTGACCGACGACATTGGGGTTCCG
ACGATCAGGGGCCCGGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
ATTGGCCCCTATCCCTCATCAAACCTCAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACG
TCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGT
TTCAAAAATCGTGAAAAATAAAAAAGAGTCGTCTTGCCATGAAACTTAACGTGAAGGCTTAAGGG
ACCATTGTATCAATTTACAAGCCATAAAAATGGCATTGGAAGTAGAAATATGAAGATGTGCCTAA
ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTCGCCGGCATAGTGCCCG
CCCGCCCGCTCCTTTAATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
AGATCCAGGGTTGGGGCAGCAGGATCGACAGCACGTAGAAGGGGACCCAACCGATCCCTGACTTG
CGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCACAC
AAAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGCACCAAACCGAGGG
TTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGT
Found at i:15939405 original size:26 final size:26
Alignment explanation
Indices: 15939369--15939419 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
15939359 TCACTTAGGC
15939369 ATACAGAGTTCATTCCCAGTCTAAGT
1 ATACAGAGTTCATTCCCAGTCTAAGT
*
15939395 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
15939420 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGT
Found at i:15940009 original size:26 final size:26
Alignment explanation
Indices: 15939957--15940009 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
15939947 GTTGACTTAG
* * * *
15939957 GCATATGGAGTTCATTCCCATTCTAA
1 GCATACGGAGCTCATTCCCAGTATAA
*
15939983 GCATACGGAGCTCATTCCTAGTATAA
1 GCATACGGAGCTCATTCCCAGTATAA
15940009 G
1 G
15940010 ATCGGATCGG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTATAA
Found at i:15940876 original size:27 final size:26
Alignment explanation
Indices: 15940846--15940899 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15940836 TTCATGGGTT
* *
15940846 GACTTAGGCATACGGAGTTCATTCCCA
1 GACTAAGG-ATACGAAGTTCATTCCCA
*
15940873 GACTAAGGATATGAAGTTCATTCCCA
1 GACTAAGGATACGAAGTTCATTCCCA
15940899 G
1 G
15940900 TACAAGATCG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 17 0.71
27 7 0.29
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (26 bp):
GACTAAGGATACGAAGTTCATTCCCA
Found at i:15941787 original size:26 final size:26
Alignment explanation
Indices: 15941751--15941803 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15941741 GTTGACTTAG
15941751 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15941777 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15941803 G
1 G
15941804 ATCGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15941807 original size:898 final size:891
Alignment explanation
Indices: 15939794--15949688 Score: 11948
Period size: 898 Copynumber: 11.2 Consensus size: 891
15939784 GCCAACAAAA
* * ** * *
15939794 ATACGGAGTTCATTCCCGGTCTAAGATCGGACTGGACCGAGGGTTACGACAGCGGGATCAGGATC
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT------GCGGCAGCAGGATC
* * * * *
15939859 GGCAGCACGTAGAGGGGGACCTGACCGATCCCCGGCTTGCGGATCCCGCCCCTCTGTCCGACTGA
60 GGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * *
15939924 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCATTCTAAGCATAC
125 GCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATAC
* **
15939989 GGAGCTCATTCCTAGTATAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCT-GGCTCGAA
189 GGAG-TCATTCC-AG--TCAGATCGGA-C-GA-CGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* * * * * *
15940053 AATGTACTGGTGCCACA-TTTTCTTCGTCGGGGCACCATCGTCGAAGCATCGTCGAAGAACCTGA
247 CATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGA
* ** *
15940117 CCGACGGCATTGGGGTTCCGGTGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGG
312 CCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGG
* *
15940181 GTGCTGGTACTTGGCCCTTATATTGG-CCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCT
376 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
** * *
15940245 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGTTATTAAAGTGTCTAAAATGGGGGC
441 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
** * * *** *
15940310 ACTTTTTTTGAATTGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTTTACCCTTG
506 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * *
15940375 CCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGTCAAAAATCTTTCC-AAAAAATTTTT
571 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA-TTTT
* * * **
15940439 CAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAATATAGAAAACGAGTCATCTTGCGTT
635 AAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
15940504 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
700 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
*
15940569 ACGCAGAAATAGGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
765 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* ** * * ** *
15940634 CATCTCTCTGGCCGGTGTAGGGCTCGCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGC
830 CGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGC
* ** * * * * * *
15940696 ATACGGAGTTCATTACCAGTCTAAGATCAGACTGGACCGGGGGTTGTGGCAGTAGGATTGACAGT
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGC
* * ** ** * **
15940761 ACACAAAGAAGGACCCGGTCGATCCCCGGCTTCCGCATCCCGCCCCTCTGGCCGGCTGAGGGCCC
66 ACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCC
* * * * *
15940826 GTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGACTAAGGATATGAAGTT
131 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA-GATACGGAG-T
* * *
15940891 CATTCCCAGTACAAGATCGGACTGGACCAAGGGTTGCAGCAGCACATGCCGGGCTCGGGCATGTG
194 CATT-CCAGT-C-AGATCGGAC--GA-CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* * * * *
15940956 CTGGTGCCGCATTTTTCTTCACCGGGGCACCATCATCGGAGCATCGCCGGAGAACCTGATCGGTG
253 CTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCG
* * *
15941021 ACATTGGGGTTCCGATGATCGGGGGGGCCAGGGGGGTTTGCGCACATGATGTGCGATGGGTGCTG
318 GCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
*** * *
15941086 GTACTTGAAACTTATATTGGCCCCCTATCCCTCATGAAACCTTGAGAACTCACACCCCCTTAAAG
382 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* *
15941151 AGCTTTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
447 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * *
15941216 TTCAAATGGTCACAAAGTCTTGTACACTTTGAGTTTTTAGCAGAATTTTTTTGTGCATGCCAACA
512 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
15941281 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCACAAA-TCCTTCCGAAAAAATTTTAAAAAA
577 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA-AAACTCCTTCCGAAAAAATTTTAAAAAA
** *
15941345 TCTCGAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACT
641 TCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* *
15941410 TCACGTGAAGGCTTAAGGGA-CATT-TATGAATTTACAAGCCATAAAAATGGCATCGGCACACAG
706 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
* * *
15941473 AAATATGAAGACGTGCCTAAACCCACCTACCACCATATCGATCCATGGCTTGCGCATCCCGTCTC
771 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * *
15941538 TCTAGCCGACGTAGTGCCCGCCCGCCCGCCTGCTTGTTACGTCGGTTGGCTTAGAC
836 TCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGC
* * * * * **
15941594 ATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGAGATGCAGCAGCAAGATCAACAGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGC
* * * * * *
15941659 ATGCAGAGGGGGACCCGGCCTATCCCCGACTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCACCG
66 ACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCC
* * *
15941724 GAACGTTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
131 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATACGGAG-T
*
15941789 CATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTG
194 CATT-CCAGTC--AGATCGGA-C-GA-CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* *
15941854 CTGGTGCCGCATTTTTCTTCA-CTGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTTACCGAC
253 CTGGTGCCGCATTTTTCTTCATC-GGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGC
* *
15941918 GGCATTGGGGTTCCGACGATCGAGGTGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
317 GGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* * * * * * *
15941983 GTACTTAGCCGTTATATTGGGCCCCTATCCCTCATCAAACCTCAACAACTTACACCCCATT-AAG
382 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * *
15942047 TAGCATTTGATATTTTACAGGTTTCCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
447 -AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
*
15942112 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-AAATTTTTTGTGCATGCCAAC
511 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* *
15942176 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATATT--AAAA
576 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
*
15942239 TCTTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
641 TCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * *
15942304 TCACGCGAAGGCTTAAGGGACTATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
706 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
* *
15942369 -AATACGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTC-CATCCCATCT
771 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG-CGCATCCCGTCT
* * *
15942432 CTCTAGCCGACGTAGTGCCCGCCCGCCCGTCCACCCGCTCGTTTCGTCGGTTGGCTTAGAC
835 CTCTGGCCGACGTAGTGCCCGCCCGCCCG----CCCGCTTGTTTCGTCGGTTGGCTTAGGC
** * * *** * *
15942493 ATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGATCAAGGGTTGCTATAGCAAGATCGGCAAC
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGC
* * *
15942558 ACGCAGAGGGGGACCCGACCGATCCCCGACTTGTGCATCTCGCCCCTCTGGCCGGCTGAGCACCC
66 ACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCC
*
15942623 GAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
131 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATACGGAG-T
* * * * * *
15942688 CATTCCCAATCTAAGATCGAACCAGACCGCGGGTTTCAGCAGCACATGCTGGGCTCGGGCATGCG
194 CATT-CCAGTC--AGATCGGA-C-GA-CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* * * ** * **
15942753 CTGGTGCCGCATTTTTCTTGA-CTGGGGCACGATCGCCGGAGCATCGTCGGAGAACCTTTCTGAT
253 CTGGTGCCGCATTTTTCTTCATC-GGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGC
* * * *
15942817 GGCATTGGGGTTCCGACGATCGAGGTGGTCAGGGGGGTGTGCGCACATGATGTGCAATGGGTGCT
317 GGCATTGGGGTTCCGACGATCG-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * *
15942882 GGTACTTGGCCGTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAG
381 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * * *
15942947 GAGCATTTGATATTTTACTGGTTTCCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
446 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* *
15943012 TTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
511 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* *
15943077 AAAAATACAAGGATCACGTCTACCAAGTTTGGGG-TAAAACAT-CTTTCGAAAAAATTTTAAAAA
576 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-TCCTTCCGAAAAAATTTTAAAAA
* ** * *
15943140 ATCCCGAACCGCCAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTACCTTGAAAC
640 ATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * * * **
15943205 TTCACGTGAATGCTTAAGAGACTATGGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATA
705 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
* *
15943270 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATAGATCCACGGCTTACGCATCCCG--T
770 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * *
15943333 CTCTGGCCGGCGTAGTGTCCGCCCGCCCGCCCGCTTGTTTCATCGGTTGGCTTAGGC
835 CTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGC
* * * * ** *
15943390 ATACGGAGTTCATTCCTAGTCTAAGATC-GAACCAGATCAAAGGTTGCGGCAATAGGATCGGCAC
1 ATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAG
* * * * * * * *
15943454 CACGCAGAGGGAGACTCGGCCGATCCTCGGCTTGCGCATCCCGCCCCTTTGGTCGACTGAGCGCC
65 CACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACC
* * *
15943519 CGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCCGTCTAAGAT-C-G-G--
130 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATACGGAGTC
*
15943579 A---C---C--A---GAC--CGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
195 ATTCCAGTCAGATCGGACGACGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
** * * * * *
15943631 CGCATTTTTCTTTGTCGGGGCACCATCGCCGGAACATTGTCGGAGAACCTGACCGACGGTATTGG
260 CGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGG
* * * *
15943696 GGTTCCGGCGATCGGGGGGGCCGGGGGGTATACACACATGATGTGCGATGGGTGCTGGTACTTGG
325 GGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* *
15943761 CCCTAATATTGGCCCCCTATCCCTCATCAAACAT-GAGAACTCACACCCCCTTAAAGAGCATTTG
390 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* * * *
15943825 AGATTTTATAGGTTTGTTGCCAGTAGCAATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATG
455 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* * * *
15943890 GTCACAAAATCTTGTACACTTCGATTTTTTTGCTGAATTTTTTTGTACATGCCAAAAAAAATACA
520 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
*
15943955 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCT-GAAAC
585 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCG-AAC
* * * * * *
15944019 CGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCCTCTTGCCACGAAACTTCATGTGA
649 CGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* * * * *
15944084 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAGAATGGAATTGGCACGCAAAAATTTAA
714 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGA
* *
15944149 AGATGTGCCTAAACCCACCTACCACCTTATCGATTCACGGCTTGCGCATCCCGTCTCTCTGGCCG
779 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * ** **
15944214 GCGTA------G--CGCCCGCTCATTTCATT-GT--G-TGGCTTAGGC
844 ACGTAGTGCCCGCCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGC
* * * * **
15944250 ATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGGCCGAGGGTTACGACAGCAGGATCGATAGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGC
* * * * * *
15944315 ACGTAGAGGAGGACCCGACCGATGCCAGGCTTGCGCATCTCGCCCCTCTGGCCGGTTGA-CAGCC
66 ACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCA-CC
* * * *
15944379 CGCACGCTCGTTCCGTGTGTTGACGTAGGCATACAGAGTTCATTCCCAGTC-----TA---AG--
130 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATACGGAGTC
* ** *
15944434 -----A-TCAGATCGGAC--CGAGGGTTGCGGTAGCACATGCTGGGCTCAAGCATGTGCTGGTAC
195 ATTCCAGTCAGATCGGACGACGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* * ** * * *
15944491 CACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTAACTGGCAGCATTGG
260 CGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGG
* * ** * *
15944556 GGTTCCGGCAATC-GGGGGGCCGGGGGGGTGTGCAAACATGATGTGCAATGGGTGCTGGTACTAG
325 GGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* * *
15944620 GCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCAATT
389 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* * * *
15944685 CAGATTTTACTGGTTTGCTACCGGTAGCCATTAAAGTGT-TCGAAATGGGGACACTTTTTTCAAA
454 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAATGGGGACACTTTTTTCAAA
* * * * ** *
15944749 TGATCACAAAGTCTTGTACACTTCTAGTTTTTAGCTAAATTTTTTTGTGCATGTAAAGAAAAATA
518 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* * * * * *
15944814 CAAGGATCATGTCCACCAAGTTTGGGGCTAAAACTCCTTCCGAAAAAATTTAAAAAAATCCCAAA
583 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAA
* * * * * *
15944879 CCCGCAAAAAGGTTTCAAAAATCGTGAAAAATAAAAAACCAGTCATCCTGCCATGAAACTTCACA
648 -CCGTAAAAA-GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* *
15944944 TGAAGGGTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
711 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATA
* * * * * * *
15945009 TGAAGATGTGCCTAAACCCAACTACCACCCTATCAATCCACAGCGTGCACATCTCGTTTCTCTGG
776 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * *
15945074 CCGGCGTAGTGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGGTGGCTTCA-GC
841 CCGACGTAGTGCCCGCCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTT-AGGC
* * * * * ***
15945125 ATACGGAGTTCATTCCCAGTCTAAGATC-GAACAAGATCGAGGGTTACAGCAACAGGATCAATAG
1 ATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAG
* * * * * *
15945189 CATGCAGATGGGGACCCGACCGATCCCAGGCATGCGCATCTCGCCCCTCTGGCTGGCTGAG-AGC
65 CACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCA-C
* *
15945253 CCGCACGCTCGTCTT-GTGTGTTGACTTAGGCATAAGGAGTTCATTCCCAGTCTAAGAT-C--AG
129 CCGCACGCTCGT-TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATACGGAG
* ** *
15945314 -------A--C--A--GGACTA--AGGGTTATGGCAGCACATGCTGGGCTTGGGCA--TGCTGGT
193 TCATTCCAGTCAGATCGGACGACGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * ** * *
15945362 GCCGCATTTTTCTTCACCGGGACACCATCGTCGGAGCATCGTCGGAGAACCTGATTGGTGGCAAT
258 GCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATT
* *
15945427 GGGGTTCCGGCGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
323 GGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* * *
15945492 GGCGCTTATATTGGTCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAAT
388 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* * * *
15945557 TCAGATTTTACTGGTTTGCTGCCAGTAGCCATTAAAATGTCTAAAATGGGGACACTTTTTTCAAA
453 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* * * *
15945622 TGGTCGCAAAATCTTGTACACTTAGAGTTTTTAGCTGAATTTGTTTGTGCAAGCCAACAAAAATA
518 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* * *
15945687 CAAGGATCACGTCTACCAAGTTTGGTGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAA
583 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAA
* *
15945752 CCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTGGCCATGAAACTTCACGTG
648 CCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
*
15945817 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATG
713 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG
* * * * * *
15945882 AAGATGTGCCTAAACCCATCTACCACCATATCAATCCACAGCTTGCGCATCCCATCTCTCTGGCT
778 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * *
15945947 GATGTAGTGCCTGCCCGCCCGTCCGCCCGCTCGCTCGTTTCGTCGATTGGCTTAGGC
843 GACGTA--G--TGCCCGCCCGCCCGCCCGCT---T-GTTTCGTCGGTTGGCTTAGGC
* * * * * * * *
15946004 GTACGGAGTTCATTCCCAGTCTAAGAT-TGAATCAGACCAAGGGTTGTGACAGCAAGATCAGCAG
1 ATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAG
* * * **
15946068 CACCCAGAGGGGGACCC-AGCCGATCCCAGGCCTATGCATCCCGCCCCTCTGGCCGGCTGAGCAC
65 CACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCAC
* * * * *
15946132 CCGCACGCTCATTTTGTTGGTTGACTTAGGCATACGGAGTCCATTCCGAGTCTAAGCATACGGAG
129 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATACGGAG
* * * *
15946197 TTCATTCCCAGTCTTAGATCGGATCGGACCGAGGGTTGCGGTAGCACATTCTAGGCTCGGGTATG
193 -TCATT-CCAGTC--AGATCGGA-C-GA-CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* * * * *
15946262 TGTTGGTGCTGCATTTTTCTTCGTC-GGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGG
251 TGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGG
* * *
15946326 CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGTAAATGATGTGCGATGGGTGCG
316 CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * *
15946391 GGTACTTGGCCTTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGCACTCACACCCCCTTAAA
381 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
*
15946456 GAGCATTTGAGATTTTACAGGTTTTCTGCCAGTAGCCATTAAAGTGTCT-AAATTGGGGACAC-T
446 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA-TGGGGACACTT
* * *
15946519 TTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTGGCTGAATTTTTTTTTGCATGCCAA
510 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * *
15946584 CGAAAATACAAGGATCACGTCTACCAACTTTGGGGACAAAACTCCTTCCGAAAAAATTTTAAAAA
575 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
** ** * *
15946649 ATCTCGAACCCCAAAAAGTTTTGAAAATCATGAAAAATAGAAAAGGAGTCGTCTTGCCATGAAAC
640 ATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* *
15946714 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAACGGCATTGGCATGCA
705 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
15946779 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
770 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * ** * *
15946844 CTCTAGCCGGCGTAGTGCCCGCGCACCCGCCCGCCCGCTCATTTCGTTGGTTGGCTTAGAC
835 CTCTGGCCGACGTAGTG-CC-CG--CCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGC
** **
15946905 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTAGCAGCAACATCGGCAGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGC
* * * * *
15946970 ACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGTGCATCCCTCCCCTCTGGCCGGTTGGGCACCC
66 ACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCC
* *
15947035 GAATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-C-G-G--A
131 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATACGGAGTCA
* *
15947095 ---C---C--A---GAC--CGAGGGTTGCAGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCC
196 TTCCAGTCAGATCGGACGACGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * * * * *
15947147 GTATTTTTCTTCATCGGGGCACCATTGTCGGAGCATCGTCGGAGAACTTTACCTGTGGCATTGGG
261 GCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGG
* * * *
15947212 GTCCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGTTGTGCAATGGGTGATGGTACTTGGC
326 GTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
15947277 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
391 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
*
15947342 GATTTTACAGGTTTGCTGCCAGTAGTCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
456 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* * * * * *
15947407 TCACAAAATCTTGTTCACTACGAGTTTTTAGCTTAATTTTTTTATGCATGCCAACAAGAATTCAA
521 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* * * *
15947472 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCTGAAAAAATTTTAAAAAATCTTGAACCC
586 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCG
* * *
15947537 CACAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAG
651 TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
** *
15947602 TTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
716 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAG
* * *
15947667 ATGTGCCTAAACCCATCTACCACCTTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGAC
781 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
* * * * * *
15947732 GTAGT----GCCCACCAGCCCACTTGTTTCATCGGTTGTCTTAGGA
846 GTAGTGCCCGCCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGC
** * * * * *
15947774 ATACAAAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGGATTGGTAGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGC
* * ** ** ** **
15947839 ACACAGAAGGGGACCCGACCGATCCCCAACTTGCGCATCATGCCCCTCTGGCCGATTGAGTGCCC
66 ACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCC
15947904 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-C-G-G---
131 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATACGGAGTCA
* *
15947963 ----A--C---T-GGAC--CGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTCCC
196 TTCCAGTCAGATCGGACGACGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* *
15948016 GCATTTTTC-T--TC---G-----TC--AGG-GCA-C--C-----A--T---CGGCGGCATTAGG
261 GCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGG
*
15948054 GTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGATACTTGGC
326 GTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* * *
15948119 CCTTATATTGGTCCCCTATCCATCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGA
391 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* * *
15948184 GATTTTATAGGTTTGCTGCCAGTATCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGT
456 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* *
15948249 TCACAAAATCTTGTACACTTCAAGTTTTTAGCTGATTTTTTTTGTGCATGCCAACAAAAATACAA
521 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* * * *
15948314 GGATCGCGTCTACCAAGATTGGGGCCAAAACTCCTTCCGAAAAAATTTCAAAAAATCCCGAACCG
586 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCG
** * *
15948379 TAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAG
651 TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
*
15948444 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCATC-CAGAAATATGAA
716 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-CGCAGAAATATGAA
* * *
15948508 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGGTTACGCATCCCG--TCGCTGGCCGA
780 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA
* * *
15948571 CGTAGTGCCCGCTCGCCCACTCG--T-TTT-GTCGGTTGGCTTAGGC
845 CGTAGTGCCCGCCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGC
* * * * * *
15948614 ATACGGAGTGCATTCCTAGTCTAAGATCAGACCAAACTGAGGGTTGCGGTAGCAGGATCGGTAGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGC
* **** * * * **
15948679 ACGTAG-GGGGGACCCGGTTAATCCCCGGCTTGTGCATCCCGCCCCTCTGGTCGGCTAAGTGCCC
66 ACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCC
*
15948743 GCACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
131 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATACGGAG-T
* *
15948808 GATTCTCAGTCTAAGATCGGACCCGACCGAGGGTTGCGGCAGCACATGCTGGGCTGGGGCATGTG
194 CATTC-CAGTC--AGATCGGA--CGA-CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* * * *
15948873 CTGGTGCCGTATTTTTCTTCGTCGGGGCACCA---T-----CA-C--CGGAGAACCTAACCAGCG
253 CTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCG
* *
15948927 GCAATGGGGTTCCGACGATCGGGGGGGTCGGGGGAGTGTGCGCACATGATGT-CGATGGGTGCTG
318 GCATTGGGGTTCCGACGATCGGGGGGGCCGGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTG
*
15948991 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCTCGAGAACTCACACCCCCTTAAAG
382 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * * *
15949056 AGCATTTGAGAGTTTATAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTAAAATGGGGACACTTTT
447 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
*
15949121 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAGTTTTTTTGTGCATGCCAACA
512 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* * * * *
15949186 AAAATACAAGGATCACCTCTACCAAGTTTGGGACCAAAATTGCTT-CAAAAAAATTTTAAAAAAT
577 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* ** * * * *
15949250 CCCGAACTATAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCCAAGAAACTT
642 CTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * * *
15949315 CACGTGATGGTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCTCCCAGA
707 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGA
* *
15949380 AATATGAAGATGTACCTAAACCCATCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
772 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * * * *
15949445 CTGGCCGACATAGTGCCTGCCCGTCCGCCCGCCCGCTTATTTCATCGGTTAGCTTAGGC
837 CTGGCCGACGTA--G--TGCCCGCCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGC
* * ** * *
15949504 ATACGAAGTTCATTCCCAGTCTAAGATCGGATGA-ACCGAGGGTTGCGGTAGTAGGATCGGCAGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGC
* * * * *
15949568 ACGCAGAGGGGGACCCGATCGATCCTCGACTTGCGCATCCCGCCCCTCTGGCCGGCAGAGCGCCC
66 ACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCC
** * * * * *
15949633 ATACACTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGAT
131 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
15949689 TGGACCAGAT
Statistics
Matches: 7825, Mismatches: 966, Indels: 417
0.85 0.10 0.05
Matches are distributed among these distances:
839 97 0.01
840 88 0.01
841 4 0.00
842 474 0.06
843 1 0.00
844 7 0.00
845 1 0.00
847 1 0.00
852 2 0.00
854 2 0.00
855 6 0.00
856 2 0.00
857 1 0.00
858 1 0.00
859 10 0.00
860 334 0.04
861 194 0.02
862 10 0.00
863 170 0.02
864 12 0.00
865 51 0.01
866 4 0.00
868 4 0.00
869 417 0.05
870 264 0.03
871 294 0.04
872 26 0.00
873 346 0.04
874 9 0.00
875 264 0.03
876 212 0.03
877 318 0.04
878 5 0.00
879 170 0.02
880 200 0.03
881 270 0.03
882 30 0.00
883 4 0.00
884 1 0.00
886 15 0.00
887 1 0.00
888 1 0.00
889 37 0.00
890 138 0.02
892 1 0.00
893 1 0.00
894 88 0.01
895 93 0.01
896 274 0.04
897 392 0.05
898 504 0.06
899 403 0.05
900 503 0.06
901 270 0.03
902 167 0.02
903 57 0.01
905 348 0.04
906 205 0.03
907 21 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (891 bp):
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGC
ACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCC
GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATACGGAGTCA
TTCCAGTCAGATCGGACGACGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
GCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGG
GTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCG
TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAG
ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
GTAGTGCCCGCCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGC
Found at i:15942686 original size:26 final size:26
Alignment explanation
Indices: 15942650--15942702 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15942640 GTTGACTTAG
*
15942650 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
15942676 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
15942702 G
1 G
15942703 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:15946197 original size:26 final size:26
Alignment explanation
Indices: 15946161--15946210 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
15946151 GTTGACTTAG
*
15946161 GCATACGGAGTCCATTCCGAGTCTAA
1 GCATACGGAGTCCATTCCCAGTCTAA
*
15946187 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGTCCATTCCCAGTCT
15946211 TAGATCGGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTCCATTCCCAGTCTAA
Found at i:15948806 original size:26 final size:26
Alignment explanation
Indices: 15948770--15948822 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15948760 GTTGACTTAG
15948770 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
15948796 GCATACGGAGTTGATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15948822 G
1 G
15948823 ATCGGACCCG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15949758 original size:159 final size:158
Alignment explanation
Indices: 15949484--15949845 Score: 429
Period size: 159 Copynumber: 2.3 Consensus size: 158
15949474 CGCCCGCTTA
* * * **
15949484 TTTCATCGGTTAGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGATGAACCGAGGGTTG
1 TTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAACCGAGGGTTG
* * ** * * *
15949549 CGGTAGTAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCTCGACTTGCGCATCCCGCCCC
66 CGATAGCAGGATCCACAGCACGCAGAAGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCC
* * *
15949614 TCTGGCCGGCAGAGCGCCCATACACTCG
131 TATGGCCGGCAGAGCACCCACACACTCG
* * * **
15949642 TTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGACCAGATGGAGGGTT
1 TTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCA-ACCGAGGGTT
* * *
15949707 GCTATAGCAGGATCCACAGCACTG-AGAAGGGGACCCGACCGATCCCCGACTTGCGTATCCTGCC
65 GCGATAGCAGGATCCACAGCAC-GCAGAAGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCC
** *
15949771 CCTATGGCCGGTTGAGCACCCACACGCTCG
129 CCTATGGCCGGCAGAGCACCCACACACTCG
* * * *
15949801 TTTCATGGGTTGACTTAGCCATACGGAGTTCATTCCCAGTCTAAG
1 TTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
15949846 CATACGGAGT
Statistics
Matches: 170, Mismatches: 32, Indels: 3
0.83 0.16 0.01
Matches are distributed among these distances:
158 46 0.27
159 123 0.72
160 1 0.01
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (158 bp):
TTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAACCGAGGGTTG
CGATAGCAGGATCCACAGCACGCAGAAGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCC
TATGGCCGGCAGAGCACCCACACACTCG
Found at i:15954032 original size:26 final size:26
Alignment explanation
Indices: 15953996--15954048 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15953986 GTTGATTTAG
15953996 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
15954022 GCATATGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15954048 G
1 G
15954049 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15954425 original size:882 final size:882
Alignment explanation
Indices: 15950586--15955837 Score: 6029
Period size: 884 Copynumber: 5.9 Consensus size: 882
15950576 CCACATTTTT
* * * * * *
15950586 CATCGTCGGAGCATCATCGGAGAACCTGACTGGCAGCATTGGGGTTCTTG-TGATCAGGGGGTCG
1 CATCGTCGGAGCATCATC-GAGAACCTGACCGGCGGCATTGGGGTTC-CGACGATCGGGGGGCCG
*
15950650 GGGGGTGTGCGCACATAATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
64 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
*
15950715 TCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
129 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* *
15950780 TAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTG
194 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGCTCACAAAATCTTGTACACTTTG
*
15950845 AGTTTTTAGCTGAATATTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC-ATCCAAGTTTG
259 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA-CCAAGTTTG
* * ** * * * * *
15950909 GGACCAAAACT-TTTTCTGAAAAAATTTTAAAAAATTTCAAACTGTAAAAAGTTTAAAAAATCGT
323 GGGCCAAAACTCCTTTC-G-----------AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCAT
15950973 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
376 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* * *
15951038 AATTTACAAGCCATAAAAATGGGATTGGCATGCAGAAGTATGAAGATGTGCCTAAACCCACCTAC
441 AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* *
15951103 CACCCTATCGATCCACGGCTTGCGCATCCCGTTTCTCTGGCTGGCATAGTGCCCGCCCGCCCGCT
506 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGT----GCCCG-CC-CT
* * * * * *
15951168 CGCCAGCTCATTTCGTCGGATGGCTTAGGCATACTGAGTTCATTCCCAGTCTAAGA-TCGCACCT
565 --CCAGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAG-ACCA
** ** * * * *
15951232 GACCAAGGGTTACGGGGGCAGGACCGGCAGCACGTAGAGGGGGACCCGGTCGATCCTCGGCTTGC
627 GACTGAGGGTTACGGCAGCAGGATCGGCAGCACGCAAAGGGGGACCCGGTCGATCCCCGGCTTGC
* * * * *
15951297 CCATCCTGCCCCTCTGGCTC-GCTGAGCGCCTGCAAGCTCGTTTCGCGGGTTGACTTAGGCATAC
692 GCATCCCGCCCCTCTGGC-CGGCTGAGCACCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * * * *
15951361 GGAGTTCATTCCTAGTCTAAGCATACGAAGTTCATTCCCAGTCAAAGAACGGACTGGACCGAGGG
756 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGG
* * ** * * *
15951426 TTGCGACTGCACATGTTGGGCTCGGGCATGTGCTGGTAACACATTTTTCTTCGTTGGGGCAC
821 TTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGTAC
* * * * * * *
15951488 CATTGTCGGTGCGTCATCAGAGAACCTCACCGGCAGCATT-GGGTTTCGAGTGATCGGGGGGGCC
1 CATCGTCGGAGCATCATC-GAGAACCTGACCGGCGGCATTGGGGTTCCGA-CGATC-GGGGGGCC
15951552 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
63 -GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * * * *
15951617 CCTCAACGAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGACATTTTACAAGTTTGATGCC
127 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
*
15951682 AGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATTG-TCACAAAATCTTGTACACT
192 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA-TGCTCACAAAATCTTGTACACT
* * *
15951746 TTGAGTTTTTTA-CTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTATCAAGT
256 TTGAG-TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * * **
15951810 TTGGGGTCAAAACTCTTTTTGAAAATTTTTTTAAAAATCCCGAACCATAAAAAGTTTCAAAAATC
320 TTGGGGCCAAAACTCCTTTCG-----------AAAAATCCCGAACCGCAAAAAGTTTCAAAAATC
*
15951875 AAGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC-----A
374 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
*
15951935 T--A---A-AA---AT-----T-GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
439 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
* ** * *
15951985 ACCACCCTATCGATCCATGGCTTGCGCATCCTATCTCTCTGGCCCGCGTAGTGCCCGCTTGCCCG
504 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG-CCG-GCA-T---AG--TGCCCG
* * * * *
15952050 CCCGCCTGCTCGTTTCATCGGTTGGCTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACC
561 CCCTCCAGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACC
* * * * * * *
15952115 AGACCGAGGGTTGCAGCAGCAGGATTGGCAGCACACAAAGGGGGACCCGATCGATCCCCGGTTTG
626 AGACTGAGGGTTACGGCAGCAGGATCGGCAGCACGCAAAGGGGGACCCGGTCGATCCCCGGCTTG
* * * * *
15952180 CGCATCCTGCCCCTCTGGCTGGCTGAGCACCCGCACGCTCATTTCGTGGCTTGACTTAGGCATAC
691 CGCATCCCGCCCCTCTGGCCGGCTGAGCACCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * * * *
15952245 GGAGTTCATTCCCAGTAC-AAGCATACGGAGATCATTCCCAATCTAAGATCGGGCCAGACTGAGG
756 GGAGTTCATTCCCAGT-CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGG
*** * * *
15952309 GTTGCGGTGGCACATGCTGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCAC
820 GTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGTAC
* * *
15952372 CATTG-CAGGAGCAAT-ATCGAAGAACCTGACCGACGGCATTGGGATTCCGACGATCGGGGGGCC
1 CATCGTC-GGAGC-ATCATCG-AGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCC
* *
15952435 GGGGGGTGTGCTCATATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
63 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * *
15952500 CTCATCAAATCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAAATTTTACAGGTTTGTTGCCA
128 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* *
15952565 GTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA-ATAAATCTTGTACACTT
193 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGCTCACA-AAATCTTGTACACTT
* * * *
15952629 TGAGTTTTTAGTTGAATTTTTTTGTGCATGCCAACAAAAATGCAAGGATCACGTGTACGAAGTTT
257 TGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
** *
15952694 GGGGCCAAAACTCCTCCCGACAAAATTTTAAAAAATCCCG-ACCGTAAAAAGTTTCAAAAATCAT
322 GGGGCCAAAA---CT--C--C----TTTCGAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCAT
* * *
15952758 GAAAAATAGAAAACGGGTCATCTTGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATG
376 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* * * *
15952823 AATTTACAAACAATAAAAATGGCATTGGCACGCTGAAATATGAAGATGCGCCTAAACCCACCTAC
441 AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* *
15952888 CACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCAGC-CCAC
506 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCC--CTCCA-
* * *
15952952 CCGCCCACTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCTAGTATAAGATCT-GACC
568 --G----CTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-TAGACC
* * * * * * *
15953016 AGA-TCGAGGGTTGCGGCAACAGCATCGACAGCACGCAGAA-GGGGACCTGG-CTGATCCTCAGC
626 AGACT-GAGGGTTACGGCAGCAGGATCGGCAGCACGCA-AAGGGGGACCCGGTC-GATCCCCGGC
* * *
15953078 TTGCGCATCCCGCTCCTCTGGCCGGCTGAGCATC-GACACGCTCGTTCCGTGGGTTGACTTAGGC
688 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCTG-CACGCTCGTTTCGTGGGTTGACTTAGGC
** * * * *
15953142 ATACGGAGTTCATTCTTAGTCTAAGCGTACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCG
752 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
* * **
15953207 AGGGTTAC-AGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGTATTTTTC-T--TC---G-
817 AGGGTTGCGA-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGT
15953264 --
881 AC
* * * *
15953264 ---C--C---G-------GAGAACCTGACCGACTGCATAGAGGTTCCGACGATCGGGGGGCCGGG
1 CATCGTCGGAGCATCATCGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGG
15953314 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
66 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* *
15953379 ATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAAGTTTGCTGCCAGTA
131 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
*
15953444 GCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTCAAATGAC-CACAAAATCTTGTACACTTCGA
196 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG-CTCACAAAATCTTGTACACTTTGA
* * * *
15953507 GTTTTAAGCTGAA-TTTTTTATGCATGCCAAAAAAAAATACAAGGATCACGTCTACCAAGGTTGG
260 GTTTTTAGCTGAATTTTTTTGTGCATGCC-AACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * ** *
15953571 GGCCAAAACGCCTTTCG-AAAATCTCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGGAAA
324 GGCCAAAACTCCTTTCGAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
15953635 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
389 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
*
15953700 TAAAAATGGCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
454 TAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * *
15953765 CACGGCTTGCACATCCCATCTCTCTGGCCGGCATAGTGCCCGCCCTTCAGCTCCTTTCATCGGTT
519 CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCTCCAGCTCGTTTCATCGGTT
* * * * *
15953830 GGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATTAGACCAAACTGAGGTTTACGGTAGTAGG
584 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACTGAGGGTTACGGCAGCAGG
* * * *
15953895 ATTGGCAGCACGCAAAGGGGAACCCGGTCGATCCCCGACTTGCGTATCCCGCCCCTCTGGCCGGC
649 ATCGGCAGCACGCAAAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * *
15953960 TGCGCGCCTGCACGCTCGTTTTGTGGGTTGATTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
714 TGAGCACCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * *
15954025 TATGGAGTTCATTCCCATTCTAAGATCGGACCGGACCGAGGGTTGTGACAGCACATGCTGGGCTT
779 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTC
* **
15954090 GGGCATGTGCTGGTGCCTCATTTTTCTTCATCGACGTAC
844 GGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGTAC
* * *
15954129 CATCCTCGGAGCATCGTCAGAGAACCTAACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCG
1 CATCGTCGGAGCATCATC-GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCG
* *
15954194 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCACTTATATTGGCCCCTTATCCC
64 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* *
15954259 TCATCAAACCAT-GAGAACTCACACCCGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCA
129 TCATCAAACC-TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
*
15954323 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGCTCACAAAATCTTGTACACTTA
193 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGCTCACAAAATCTTGTACACTTT
* * * *
15954388 GAGTTTTAAGCTGAATTTTTTTTTGCATGCCAA-AAAAACTACAAGGATCACATCTACCAAGCTT
258 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA-TACAAGGATCACGTCTACCAAGTTT
* ** *
15954452 GGGGCCAAAAATCCTTTCGAAAAAATTTAAAAAAAATCCCGAA-CGCAAAAAGTTTTGAAAATCG
322 GGGGCCAAAACTCCTTTCG------------AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCA
* *
15954516 TGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTATGGGACCATTGTAT
375 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
*
15954581 GAATTTACAAGCCATAAAAATGGCATTAGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
440 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * *
15954646 CCACCCTATCGATCCACGGCTTGCACATCCTGTCTCTCTGGCTGGCGTAGTGCCCG-CCTGCCAG
505 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCT-CCAG
* * *
15954710 CTCGTTTCGTCGATTGGCCTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACC-GAACTGA
569 CTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAG-ACTGA
* * * * * * * *
15954774 GGTTTGCGGTAGTAGGATCGACAGCATGTAAAGGGGAACCCGGTCGATCCCCGGCTTGCGCATCC
633 GGGTTACGGCAGCAGGATCGGCAGCACGCAAAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCC
* * * * *
15954839 CACCCCTCTGGCCGGCTGAACGCCCGTACGCTCGTTTCGTGGGTTGACTTAGG-ATACGGAGTTC
698 CGCCCCTCTGGCCGGCTGAGCACCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * * * *
15954903 ATTCCCAGTCTAAGCATACAGAGTTCATTTCCAGTCTAAGATCGGACTGGACCAAGGGTTGCGGC
763 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGAC
* * * *
15954968 AGCACATCCTGGGCTTGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGTGC
828 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGTAC
** * * * * *
15955023 CATCGTTAGAGCATCGTCGGAGAACCTGATCGGCGGCATTGGGGTTCTGGCTAT--------C-G
1 CATCGTCGGAGCATCATC-GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGG
* * *
15955079 GGGTTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCT
65 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* * * * * *
15955144 CATCAAACCTCAAGAACTCACACCCCCTTAAAGAACATTGGAGATTTAATAGGTTTGCTACCAGT
130 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* **
15955209 AGCCATTAAAGTGTATGAAATAAGGACACTTTTTTCAAATGGC-CACAAAATCTTGTACACTTTG
195 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT-GCTCACAAAATCTTGTACACTTTG
* * *
15955273 AGTTTTTAGGTGAATTTTTTTATGCATGCCAACAAAAATACAGGGATCACGTCTACCAAGTTTGG
259 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* ** *
15955338 GGCCAAAAATCCTTCTAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATTATGA
324 GGCC-AAAA--C-TC-------CTTTCGAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGA
* *
15955403 AAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTCAAGGGACCATTGTATGAA
378 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * *
15955468 TTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACATACCA
443 TTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * ** ** * *
15955533 CCCTATCAATCCACGACTTGCGCATCCCGTCTCTCTGGCCTACATTCTGCCCGCCCGCCCGCTCG
508 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCTCCAGCTCG
* ** *
15955598 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACTGGA-TCAAGGGT
573 TTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACT-GAGGGT
* ** * *
15955662 TGCGGCAGC---AT-----GCA-G---AGGGGGACCCGACCGATCCTCGGCTTGCACATCCCGCC
637 TACGGCAGCAGGATCGGCAGCACGCAAAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCC
** *
15955715 CCTCTGGGTGGCTGAGCACCTGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTC
702 CCTCTGGCCGGCTGAGCACCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
* * * * *
15955780 CCAGTCTAAGCATAC-GAATTCATTTCCAGCCTAAGATCGGACCGAATCGAGGGTTGCG
767 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCG
15955838 GTAGTAGGAT
Statistics
Matches: 3785, Mismatches: 416, Indels: 328
0.84 0.09 0.07
Matches are distributed among these distances:
855 3 0.00
856 247 0.07
857 5 0.00
859 2 0.00
860 1 0.00
862 2 0.00
863 10 0.00
864 198 0.05
868 2 0.00
870 2 0.00
872 112 0.03
873 31 0.01
874 14 0.00
875 80 0.02
876 196 0.05
877 1 0.00
881 118 0.03
882 416 0.11
883 112 0.03
884 875 0.23
885 29 0.01
886 5 0.00
887 4 0.00
888 9 0.00
890 3 0.00
891 1 0.00
892 3 0.00
893 14 0.00
894 168 0.04
895 369 0.10
896 10 0.00
897 2 0.00
898 3 0.00
899 3 0.00
900 9 0.00
901 329 0.09
902 41 0.01
903 6 0.00
904 337 0.09
905 13 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (882 bp):
CATCGTCGGAGCATCATCGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGG
GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGCTCACAAAATCTTGTACACTTTGAG
TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
CCAAAACTCCTTTCGAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
AAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
CGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCTCCAGCTCGTTTCATCGGTTGG
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACTGAGGGTTACGGCAGCAGGAT
CGGCAGCACGCAAAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
AGCACCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
CGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGG
GCATGTGCTGGTGCCACATTTTTCTTCATCGGGGTAC
Found at i:15954921 original size:26 final size:26
Alignment explanation
Indices: 15954892--15954942 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15954882 TTGACTTAGG
*
15954892 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACAGAGTTCATTCCCAGTCTAAGC
*
15954918 ATACAGAGTTCATTTCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
15954943 ATCGGACTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:15955808 original size:25 final size:26
Alignment explanation
Indices: 15955763--15955814 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
15955753 GTTAACTTAG
* *
15955763 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGCCTAA
*
15955789 GCATAC-GAATTCATTTCCAGCCTAA
1 GCATACGGAATTCATTCCCAGCCTAA
15955814 G
1 G
15955815 ATCGGACCGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 17 0.74
26 6 0.26
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGCCTAA
Found at i:15955973 original size:184 final size:185
Alignment explanation
Indices: 15955664--15956022 Score: 526
Period size: 184 Copynumber: 1.9 Consensus size: 185
15955654 TCAAGGGTTG
* * **
15955664 CGGCAGCATGCAGAGGGGGACCCGACCGATCCTCGGCTTGCACATCCCGCCCCTCTGGGTGGCTG
1 CGGCAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCACATCACGCCCCTCTGGCCGGCTG
* * *
15955729 AGCACCTGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
66 AGCACCCGCACGCTCATTTCGTGGGTTAACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATA
*
15955794 C-GAATTCATTTCCAGCCTAAGATCGGACCGAATC-GAGGGTTGCGGTAGTAGGAT
131 CAGAATTCATTCCCAGCCTAAGATCGGACCGAA-CAGAGGGTTGCGGTAGTAGGAT
* *
15955848 CGGCAGCACGCAGAGGGGGACCCGACCGATCC-CATGCTTGCATATCACGCCCCTCTGGCCGGCT
1 CGGCAGCACGCAGAGGGGGACCCGACCGATCCTC-GGCTTGCACATCACGCCCCTCTGGCCGGCT
* * * *
15955912 GAGCGCCCGCACGCTCATTTCTTGGGTTGACTTAGGCATATAGAGTTCATTCCCAGTCTAAGCAT
65 GAGCACCCGCACGCTCATTTCGTGGGTTAACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCAT
* * *
15955977 ACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACAGAGGGTTGCG
130 ACAGAATTCATTCCCAGCCTAAGATCGGACCGAACAGAGGGTTGCG
15956023 ACAGCACATG
Statistics
Matches: 155, Mismatches: 17, Indels: 5
0.88 0.10 0.03
Matches are distributed among these distances:
183 1 0.01
184 117 0.75
185 37 0.24
ACGTcount: A:0.21, C:0.29, G:0.28, T:0.22
Consensus pattern (185 bp):
CGGCAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCACATCACGCCCCTCTGGCCGGCTG
AGCACCCGCACGCTCATTTCGTGGGTTAACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATA
CAGAATTCATTCCCAGCCTAAGATCGGACCGAACAGAGGGTTGCGGTAGTAGGAT
Found at i:15955983 original size:26 final size:26
Alignment explanation
Indices: 15955947--15955999 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15955937 GTTGACTTAG
*
15955947 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15955973 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15955999 G
1 G
15956000 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15957058 original size:12 final size:12
Alignment explanation
Indices: 15957041--15957072 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
15957031 GTGCTAGTAC
15957041 TTGGCCCTTATA
1 TTGGCCCTTATA
*
15957053 TTGGCCCTTGTA
1 TTGGCCCTTATA
15957065 TTGGCCCT
1 TTGGCCCT
15957073 CTATCCCTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.09, C:0.28, G:0.22, T:0.41
Consensus pattern (12 bp):
TTGGCCCTTATA
Found at i:15959265 original size:26 final size:26
Alignment explanation
Indices: 15959229--15959281 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15959219 GTTAACTTAG
15959229 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15959255 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15959281 G
1 G
15959282 AGCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15959472 original size:12 final size:12
Alignment explanation
Indices: 15959455--15959485 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
15959445 GTGCTGGTAC
15959455 TTGGCCCTTATA
1 TTGGCCCTTATA
15959467 TTGGCCCTTATA
1 TTGGCCCTTATA
15959479 TTGGCCC
1 TTGGCCC
15959486 CCTATCCCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.13, C:0.29, G:0.19, T:0.39
Consensus pattern (12 bp):
TTGGCCCTTATA
Found at i:15961072 original size:26 final size:26
Alignment explanation
Indices: 15961036--15961087 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
15961026 TGACTTAGGC
15961036 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACGGAGTTCATTCCCAGTCTAAGA
15961062 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACGGAGTTCATTCCCAGTCTAAGA
15961088 TCGAACTAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGA
Found at i:15961961 original size:26 final size:26
Alignment explanation
Indices: 15961925--15961977 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15961915 GTTGACTTAG
*
15961925 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15961951 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15961977 G
1 G
15961978 ATCAGAATGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15962430 original size:902 final size:888
Alignment explanation
Indices: 15958360--15963571 Score: 6509
Period size: 905 Copynumber: 5.8 Consensus size: 888
15958350 AGGCATACTA
* * * *
15958360 AGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTACGACAGCACATGCTGGGCTCAGGCA
1 AGTTCATTCCCAGTCTAAGATCGAAT-GGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCA
* *
15958425 TGTGCTGGTGTCATA-TTTTCTTCGTCGGGGCACCATCGCTAGAGCATCACCGGAGAACCTGACC
65 TGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCAT--C----G--T--CCGGAGAACCTGACC
* * *
15958489 GGCGGCATTGGGGTTTCGACGATCGGGGGGGCCAGGGAGGTGTGCGCACATGATGTGCGATTGGT
120 GGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGT
* *
15958554 ACTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
184 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * * * *
15958619 AAAGAGCATTTGAGATTTTAGAGGTTTGCTGCCAGTAGCCATTAATGTGTTCGAAATGAGGACAT
249 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATGGGGACAC
* * *
15958684 TTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGGGCAAGCC
314 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
*
15958749 AAAAAAAATACAAGGATTACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAA
379 AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CAAAAAAATTTTAAA
* * *
15958814 AGATCCCAAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAA
443 AAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAA
* * *
15958879 ACCTCATGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAATGGCATT-GCAAC
508 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC-AC
* * *
15958943 GCAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCATGGCTTGCGCTTCCCG
572 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * *
15959008 TCTCTCTGGCCGGCGTGGTGCCCGCCTACCCGCCCGCCCGCTCGTTTCGTCGGTTAGCTTAGGCA
637 TCTCTCTGGCCGACGTAGTGCCCGCC-GCCCG-CCG-CCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * *** * * *
15959073 TACGGAGTTCAATCCCAGTCTAAGATTGGAATGGGCTGAGGGTTGCGGCAGCAGGATCGGCATCA
699 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCA
* * ** * *
15959138 CACAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCTTGCCCCTCTGGCCTGCTGAGCGCCCG
764 CGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCGCCCG
* *
15959203 CACGCTCATTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGG
829 CACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* ** * *
15959263 AGTTCATTCCCAGTCTAAGAGCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCA
1 AGTTCATTCCCAGTCTAAGATC-GAATGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCA
* * * * * *
15959328 TGTGTTGGTGCTGTATTTTTCTTTGCCGGGGCACCATCG-CCGGAGAACCTGATCGGGGGCATTG
65 TGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCCGGAGAACCTGACCGGCGGCATTG
* * *
15959392 GGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTACGCACATAATGTGCGATGGGTGCTGGTACTT
130 GGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA---
*
15959457 GGCCCTTATATTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCC
191 ----C-----TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * * *
15959522 TCAAAGAGCATTTGACATTTTACAGGTTTGCTGGCAATAGCCATTAAAGTG-CCTGAAATGGGGA
247 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCC-GAAATGGGGA
* * * *
15959586 CATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGTTGAAGTTTTTTT-TGCT
311 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCA
* *
15959650 TGCCAAAAAAAATACAAGGATCGA-GTGTACCAAGTTTGAGGCCAAAACTCCTTCTAAAAAAATT
375 TGCCAAAAAAAATACAAGGATC-ACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-AAAAAAATT
* * ** *
15959714 TTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCACCTTGCC
438 TTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCC
*
15959779 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATTG
503 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
** * * *
15959844 GCACATAGAAACATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGTGCAT
568 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * * *
15959909 CCCGTCTCTCTGGTCGGCGTTGTGCCCGTCCTCCCACCCAGCCGCTCGTTTCGTCAGTTGGCTTA
633 CCCGTCTCTCTGGCCGACGTAGTGCCCG-CCGCCC-GCC-GCCGCTCGTTTCGTCGGTTGGCTTA
* * * * * * * *
15959974 GGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAGGGTTACGACAACAAGATTGGC
695 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGC
* * * *
15960039 AGCATGCAAAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCACCCCTCTGGCCGGCTAAGCG
760 AGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCG
* * * * * *
15960104 CCCACACGCTCATTTCGTGGGTTGACTTTGGCAAACGGAGTTCATTCCCAATCTAAACCTACGG
825 CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
** * * * * *
15960168 AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCACATACTGGGCTCAGACA
1 AGTTCATTCCCAGTCTAAGATC-GAATGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCA
* * **
15960233 TGTGCTGGTTCTGTATTTTTCTTCACCGGGGCACCATCGCCAGAGCATCGCCGGAGAACCTGACC
65 TGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCAT---C---G--T--CCGGAGAACCTGACC
* * * * * *
15960298 GGCGACATTGGGGTTCCGGCGATTGGGTGGGTCGGGGGGTGTGCGCACATGATGTGCGATTGGTG
120 GGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
*
15960363 CTGGTACTTGACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
185 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * * *
15960428 AAGAGCATTTGAGATTTTTCAGGTTTGCTGCCAATAGCCATTAAAGTGTCAG-AATGGGGAGACT
250 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATGGGGACACT
* * * *
15960492 TTTTTCTAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGCATTTTTTTATGCTTGCC-
315 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * ** *
15960556 AACAAAAGACAAGGATCACGGC-AGCCAAGTTCAGGGCCGAAACTCCTTCTAAAAAAATTTTAAA
380 AAAAAAATACAAGGATCACGTCTA-CCAAGTTTGGGGCCAAAACTCCTTC-AAAAAAATTTTAAA
* * * * * *
15960620 AAATCTCGAACGGTAAAAAGTTTCAAAAATCGTGAATAATAGAAAACGAGTCGTCTTGACATGAA
443 AAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAA
*
15960685 ACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
508 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* * ** * *
15960750 CAAAAATATAAAGACATGCCTAAACCCACCTACCACCCTATCGATGCACAGCTTGCGCATCCCGT
573 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * *
15960815 CTCTCTGGCCGACGTAGTGCCCGCCCGCCAGCCCTCCCGCTCGTTTCGTCGGTTGGCTTAGGCTT
638 CTCTCTGGCCGACGTAGTGCCCG-CCGCCCG-CC-GCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* ** * ** *
15960880 ACGAAGTTCATTCCCAGTCTAAGATCAAACC-GAAACGAGGGTTGCTACAGCAGGATTGGCAGCA
700 ACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTGCGGCAGCAGGATCGGCAGCA
* ** * * * ***
15960944 CGTAGAGGGGGACCCGGTCGATCCCCGGCTTACGCATCTCGCACCTCTGAATGGCTGAA-CG-CC
764 CGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT-AAGCGCCC
* *
15961007 GCACGCTCTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAATACGG
828 GCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * * * * *
15961068 AGTTCATTCCCAGTCTAAGATCGAACTAGACCGAGGCTTCCGACAGCACATGCTAGGCTCGTGCA
1 AGTTCATTCCCAGTCTAAGATCGAA-TGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCA
** * * *
15961133 TGTATTGGTGTCGTAGTTTTCTTCGTCGGGGCACCATCGT-CGGAGAACCTGACCGACGGCATTG
65 TGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCCGGAGAACCTGACCGGCGGCATTG
* *
15961197 GGGTTCCGACGATCGGGGGGGCCGGGGGGAGTGCGCACATGATGTGCGATGGGTGCTGGTACTAG
130 GGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* *
15961262 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTGACACCTCCTTAAAGAGCATTT
195 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* * * * * *
15961327 GAGATTTTACAGGTTTGCTACTAGTAACCATTAATGTATCTGAAATGGGGACACTTTTTTCAAAT
260 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATGGGGACACTTTTTTCAAAT
*
15961392 GGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTTTTGTGCATGCCAAAAAAAATAC
325 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAC
* * ** * ** *
15961457 AAGGACCAAGTCTACCAAGTTCAGGGCCAAAATTCCTTCTGAAAAATTTTAAAAAATCCCGAGCC
390 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCAAAAAAATTTTAAAAAATCCCGAACC
* * * *
15961522 GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCATGACATGAAACTTCACATGAA
455 GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAA
* * ** *
15961587 GGCTTAAGGGACCAATGTATGAATTTAAAAGCCATAAAAATGTTATTGGCATGCAGAAATATGAA
520 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAA
* *
15961652 GATGTTCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCAGGCCGA
585 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA
*
15961717 CGTAGTGCCCGCCAGCCCGCTCGTCCGCTCGTTTCTTCGGTTGGCTTAGGCATACGGAGTTCATT
650 CGTAGTGCCCGCC-GCCCGC-CG-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * * * * *
15961782 CCCAGTCTAAGATCGGATCAAACCAAGGGTTGCGGCAGCAGGATCAGCAACACGTAGAGGGGGAC
712 CCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGAC
** * ** * ** *
15961847 CCGATTGATCCCTGGCTTGCGCATCCCGCCCCTCTGATCGACTAAGCGCCCGCACTTTCTTTTCG
777 CCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCGCCCGCACGCTCATTTCG
** *
15961912 TGGGTTGACTTAGGCATATAGAGTTCATTCCCAGTCTAAGCATACAG
842 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
*
15961959 AGTTCATTCCCAGTCTAAGATCAGAATGGACCCAGGGTTACGGCAGCACATGCTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATC-GAATGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCA
15962024 TGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCACCGGAGAACCTGACC
65 TGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCAT---C---G--T--CCGGAGAACCTGACC
** * * *
15962089 AACGGCATTGGGGTTCCGGCGATC-GAGGGGCCGGGGGGTTGTGCGCACATGATGTGCAATGGGT
120 GGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGG-TGTGCGCACATGATGTGCGATGGGT
* * * *
15962153 GCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCCCATCAAACCTGGAGAACTCAGACCCCCTT
184 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * * * * *
15962218 GAAGATCATTTGAGATTTTACAAGTTTGGTGCTAGTAGCCATTAAAGTGTCCGAAATGAGGACAC
249 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATGGGGACAC
* *
15962283 TTTTTTCAAATAGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCC
314 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * **
15962348 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAACCTCCTTCCGAAAAATTTTAAAA
379 AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCAAAAAAATTTTAAAA
* *
15962413 TATCCCGAACCGTAAAAAGTTCCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAA
444 AATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAA
* *
15962478 CTTCACGTGAAGGCTTGAGGGGCCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
509 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
*
15962543 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTCTCGATCCACGGCTTG-GCATCCCGTC
574 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * * * *
15962607 TCTCTGGTCGACGTAGTG--C-CTGCCCG-C-CCGCACATTTCGTCGGTTCGCTTAGGCATATGG
639 TCTCTGGCCGACGTAGTGCCCGCCGCCCGCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
** *
15962667 AGTTCATTCCTGGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAG
704 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAG
* * * * ** *
15962732 AGTGGGACCCGACCGATCCACGGCTTGCGCATCCCGCCACTCTGGCCGGCTCAGCATCCGCGCGC
769 AGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCGCCCGCACGC
* *
15962797 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA-TAT-C-G
834 TCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * * * *
15962849 -G---A----C---C--AGA-C---T--A--G-GGGTTAAGGTAGCAAATGTTGGGCTCGGCCAT
1 AGTTCATTCCCAGTCTAAGATCGAATGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCAT
* * *
15962892 GTGCTGGTACCGCATTTTTCTTCG-CTGGGGCACCATCG-CCGGAGAACCTGACAGGCGGCATTG
66 GTGCTGGTGCCGTATTTTTCTTCGTC-GGGGCACCATCGTCCGGAGAACCTGACCGGCGGCATTG
* * *
15962955 GGGTTCCGACGATCGGGGGTGCCGGGGGGTGTGCGCAAATGATGTGCGATGGGTGCTGGTACTTT
130 GGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* * * * *
15963020 GCCCTTATAGTAGCCCCCTATCCCTTATCAAACCTCGAGAACTCACATCCCCTTAAAGACCATTT
195 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* * * *
15963085 GAGATTTTACAGGTTCGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGAGACACTTTTTACAAAT
260 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATGGGGACACTTTTTTCAAAT
* *
15963150 GGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTTTGTGCATGCC-AAAAAAATAA
325 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAC
** *
15963214 AAGGATCACGTCTACCAAGTTTGGGGGGAAAACTCCTTCTGAAAAAATTTTAAAAAATCCC-AAT
390 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-AAAAAAATTTTAAAAAATCCCGAA-
** * * * *
15963278 CCCCAAAACGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTG
453 CCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTG
* *
15963343 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAATGCAGAAATATG
518 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG
*
15963408 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCC
583 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* *
15963473 GACGTAGTG--C-CCGCCCG-C-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAGTG
648 GACGTAGTGCCCGCCGCCCGCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* *
15963533 CCAGTCTAAGATCGAACCAGGCCGAGGGTTGCGGCAGCA
713 CCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCA
15963572 CATGCTAGGC
Statistics
Matches: 3767, Mismatches: 474, Indels: 182
0.85 0.11 0.04
Matches are distributed among these distances:
855 46 0.01
856 412 0.11
857 116 0.03
861 1 0.00
864 1 0.00
866 1 0.00
867 59 0.02
870 1 0.00
872 1 0.00
876 1 0.00
877 3 0.00
879 1 0.00
882 1 0.00
886 1 0.00
889 182 0.05
890 413 0.11
891 185 0.05
892 7 0.00
893 255 0.07
894 2 0.00
895 1 0.00
897 7 0.00
898 2 0.00
899 4 0.00
900 138 0.04
901 421 0.11
902 524 0.14
903 166 0.04
904 23 0.01
905 699 0.19
906 13 0.00
908 2 0.00
911 1 0.00
915 35 0.01
916 42 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (888 bp):
AGTTCATTCCCAGTCTAAGATCGAATGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCAT
GTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCCGGAGAACCTGACCGGCGGCATTGG
GGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATGGGGACACTTTTTTCAAATG
GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACA
AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCAAAAAAATTTTAAAAAATCCCGAACCG
TAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAG
GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAG
ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
GTAGTGCCCGCCGCCCGCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
GTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA
CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCGCCCGCACGCTCATTTCGTGGG
TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
Found at i:15964140 original size:709 final size:710
Alignment explanation
Indices: 15962925--15964242 Score: 2054
Period size: 709 Copynumber: 1.9 Consensus size: 710
15962915 GCTGGGGCAC
* * *
15962925 CATCGCCGGAGAACCTGACAGGCGGCATTGGGGTTCCGACGATCGGGGGTGCCGGGGGGTGTGCG
1 CATCGCCAGAGAACCTAACAGACGGCATTGGGGTTCCGACGATCGGGGGTGCCGGGGGGTGTGCG
* * * *
15962990 CAAATGATGTGCGATGGGTGCTGGTACTTTGCCCTTATAGTAGCCCCCTATCCCTTATCAAACCT
66 CAAATGATGTACGATGGGTGATGGTACTTGGCCCTTATAGTAGCCCCCTATCCCTCATCAAACCT
* *
15963055 CGAGAACTCACATCCCCTTAAAGACCATTTGAGATTTTACAGGTTCGCTGCCAGTAGCCATTAAA
131 CGAGAACTCACACCCCCTTAAAGACCATTTGAGATTTTACAGGTTCGCTACCAGTAGCCATTAAA
* *
15963120 GTGTCTGAAATGGAGACACTTTTTACAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCT
196 GTGTCTCAAATGGAGACACTTTTTACAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTTGCT
***
15963185 GAATTTTTTTGTGCATGCCAAAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGGGAAAACTCC
261 GAATTTTTTTGTGCATGCCAAAAAAATAAAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCC
* * * *
15963250 TTCTGAAAAAATTTTAAAAAATCCCAATCCCCAAAACGTTTCGAAAATCATGAAAAATAGAAAAC
326 TTCTGAAAAAATATTAAAAAATCCAAAACCCCAAAAAGTTTCGAAAATCATGAAAAATAGAAAAC
* * *
15963315 GAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
391 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGACAG
* *
15963380 AAAAATGGCATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
456 AAAAATGGCATTGGAATGCAGAAATATAAAGATGTGCCTAAACCCACCTACCAACCTATCGATCC
*
15963445 ACGGCTTGCGCATCCTGTCTCTCTGGCCGACGTAGT-GCCCGCCCGCCCGCTCGTTTCGTCGGTT
521 ACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTCGCCCGCCCGCCCGCTCGTTTCGTCGGTT
15963509 GGCTTAGGCATACGGAGTTCAGTGCCAGTCTAAGATCGAACCAGGCCGAGGGTTGCGGCAGCACA
586 GGCTTAGGCATACGGAGTTCAGTGCCAGTCTAAGATCGAACCAGGCCGAGGGTTGCGGCAGCACA
15963574 TGCTAGGCTCGGGCATGTGCTGGTGCTGTGTTTTTCTTCACCGGGGCACCGTCGCCAGAG
651 TGCTAGGCTCGGGCATGTGCTGGTGCTGTGTTTTTCTTCACCGGGGCACCGTCGCCAGAG
* ** *
15963634 CATCGCCAGAGAACCTAACCGACGGTTTTGGGGTTCCGGCGATC-GGGG-GCCGGGGGGGTGTGC
1 CATCGCCAGAGAACCTAACAGACGGCATTGGGGTTCCGACGATCGGGGGTGCC-GGGGGGTGTGC
* * * *
15963697 GTACATGATGTACGATGGGTGATGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
65 GCAAATGATGTACGATGGGTGATGGTACTTGGCCCTTATAGTAGCCCCCTATCCCTCATCAAACC
* * *
15963762 TTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAA
130 TCGAGAACTCACACCCCCTTAAAGACCATTTGAGATTTTACAGGTTCGCTACCAGTAGCCATTAA
* * * *
15963827 CGTGTGC-CAAATGCG-GACAGTTTTTTCAAATGGTCACAAACTCTTGTACACTTCAAGTTTTTT
195 AGTGT-CTCAAATG-GAGACACTTTTTACAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTT
*
15963890 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAA
258 GCTGAATTTTTTTGTGCATGCCAA-AAAAATAAAAGGATCACGTCTACCAAGTTTGGGACCAAAA
* ** * * *
15963955 CTCCTTCTGAAAAAA-ATTAAAAAATTCTAAAACCTTAAAAATTTTTGAAAATCGTGAAAAATAG
322 CTCCTTCTGAAAAAATATTAAAAAA-TCCAAAACCCCAAAAAGTTTCGAAAATCATGAAAAATAG
*
15964019 AAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
386 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* * * *
15964084 GATAGAAAAATGGCATTGGCATGTAGAAATATAAAGATGTGCCTAAACTCACCTACCAACCTATC
451 GACAGAAAAATGGCATTGGAATGCAGAAATATAAAGATGTGCCTAAACCCACCTACCAACCTATC
*
15964149 GATCCACGGCTTGGGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTT
516 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT---CGCCCGCCCGCCCGCTCGTTT
15964214 CGTCGGTTGGCTTAGGCATACGGAGTTCA
578 CGTCGGTTGGCTTAGGCATACGGAGTTCA
15964243 TTCCCAATAT
Statistics
Matches: 548, Mismatches: 52, Indels: 14
0.89 0.08 0.02
Matches are distributed among these distances:
707 3 0.01
708 217 0.40
709 279 0.51
713 49 0.09
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (710 bp):
CATCGCCAGAGAACCTAACAGACGGCATTGGGGTTCCGACGATCGGGGGTGCCGGGGGGTGTGCG
CAAATGATGTACGATGGGTGATGGTACTTGGCCCTTATAGTAGCCCCCTATCCCTCATCAAACCT
CGAGAACTCACACCCCCTTAAAGACCATTTGAGATTTTACAGGTTCGCTACCAGTAGCCATTAAA
GTGTCTCAAATGGAGACACTTTTTACAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTTGCT
GAATTTTTTTGTGCATGCCAAAAAAATAAAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCC
TTCTGAAAAAATATTAAAAAATCCAAAACCCCAAAAAGTTTCGAAAATCATGAAAAATAGAAAAC
GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGACAG
AAAAATGGCATTGGAATGCAGAAATATAAAGATGTGCCTAAACCCACCTACCAACCTATCGATCC
ACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTCGCCCGCCCGCCCGCTCGTTTCGTCGGTT
GGCTTAGGCATACGGAGTTCAGTGCCAGTCTAAGATCGAACCAGGCCGAGGGTTGCGGCAGCACA
TGCTAGGCTCGGGCATGTGCTGGTGCTGTGTTTTTCTTCACCGGGGCACCGTCGCCAGAG
Found at i:15964419 original size:26 final size:26
Alignment explanation
Indices: 15964389--15964440 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15964379 TTGACTTAGA
*
15964389 CATACTAAGTTCATTCCCAGTCTAAG
1 CATACGAAGTTCATTCCCAGTCTAAG
*
15964415 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGAAGTTCATTCCCAGTCTAAG
15964441 ATTGGACCGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAGTCTAAG
Found at i:15966037 original size:26 final size:26
Alignment explanation
Indices: 15966001--15966052 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15965991 TTGACTTAGA
*
15966001 CATATTGAGTTCATTCCCAATCTAAG
1 CATATGGAGTTCATTCCCAATCTAAG
*
15966027 CATATGGAGTTCATTCCCAGTCTAAG
1 CATATGGAGTTCATTCCCAATCTAAG
15966053 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.33
Consensus pattern (26 bp):
CATATGGAGTTCATTCCCAATCTAAG
Found at i:15967404 original size:637 final size:636
Alignment explanation
Indices: 15966165--15967407 Score: 1887
Period size: 637 Copynumber: 2.0 Consensus size: 636
15966155 AACCTAACAG
* * * *
15966165 TGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGTTG
1 TGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTATGCGCACATGATGTGCGATGGGTGCTA
*
15966230 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
66 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAATCACACCCCCTTAAAG
* * *
15966295 AGCATTGGAGATTTTACAGGTTTGCTGCCAGTAGCCCTTAAAGTGTCTAAAATGGGGACGCTTTT
131 AGCATTGGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACGATTTT
* * *
15966360 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCGACA
196 TTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* *
15966425 AAAATACAAGGATCACGTCTACCAAGTTTGAGTCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
261 AAAATACAAGGATCACGTCTACCAAGTTTGAGTCCAAAAATCCTTCCAAAAAAATTTTAAAAAAT
* ** *
15966490 CCCGAGCCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCCTGCCATGAAACTT
326 CCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCCTGCCATGAAACTT
*
15966555 CACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGA
391 CACATGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGA
* * * * *
15966620 AATATGAAGATGTGCCTAAACCCACCTATCAGCCTGTCGATCCATGGCTTGCGCATCCCGTCTCT
456 AATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * * *
15966685 CTGGTCGACGCAGTGCCCGCCCGCCCACCCGCCCGCTCATTTCGTTGATTGGCTTAAGCATACAA
521 CTAGTCGACGCAGTGCCCGCCCGCCCACCCACCCACTCATTTCGTCGATTGGCTTAAGCATACAA
15966750 AGTTCATTCCCAGTCTAAGATCGCCAAAGCATCGCTGGAGAACCTGGCCGA
586 AGTTCATTCCCAGTCTAAGATCGCCAAAGCATCGCTGGAGAACCTGGCCGA
* * *
15966801 TGGCTTTGGGGTTCGGGCGATCGGAGGGGCCGGGGCGGTATGCGCACATGATGTGCGATGGGTGC
1 TGGCATTGGGGTTCCGACGATCGG-GGGGCCGGGG-GGTATGCGCACATGATGTGCGATGGGTGC
** *
15966866 TAGTACTTGGCCCTTATATTGGCCCGTTATCCCTCATCAAGCCTCGAGAAATCACACCCCCTTAA
64 TAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAATCACACCCCCTTAA
* * *
15966931 AGAGCATTTGAGATTTTATAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC-ATT
129 AGAGCATTGGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACGATT
15966995 TTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
194 TTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* *
15967060 CATAAATACAAGGATCACGTCTACCAAGTTTGGGGT-CAAAAATCCTTCCAAAAAAATTTTAAAA
259 CAAAAATACAAGGATCACGTCTACCAAGTTT-GAGTCCAAAAATCCTTCCAAAAAAATTTTAAAA
* * * *
15967124 AATCCTGAACCACAAAATGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
323 AATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCCTGCCATGAAA
** * * ** ***
15967189 CTTCATGTGAAATCTTAAGGGGCCATTGTATGAATTTACAAGTGATAAAAATGGCATTGGCATGT
388 CTTCACATGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAC
15967254 AGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
453 AGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
** * * * * * *
15967319 TCTCTAGTCGGTGTAGTGCCCGCCCGTCCGCCCACCCACTCGTTTCGTCGGTTGGCTTAGGCATA
518 TCTCTAGTCGACGCAGTGCCCGCCCGCCCACCCACCCACTCATTTCGTCGATTGGCTTAAGCATA
** *
15967384 CGGAGTTCCTTCCCAGTCTAAGAT
583 CAAAGTTCATTCCCAGTCTAAGAT
15967408 TGGACCGAAC
Statistics
Matches: 542, Mismatches: 62, Indels: 5
0.89 0.10 0.01
Matches are distributed among these distances:
636 21 0.04
637 376 0.69
638 145 0.27
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.27
Consensus pattern (636 bp):
TGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTATGCGCACATGATGTGCGATGGGTGCTA
GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAATCACACCCCCTTAAAG
AGCATTGGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACGATTTT
TTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
AAAATACAAGGATCACGTCTACCAAGTTTGAGTCCAAAAATCCTTCCAAAAAAATTTTAAAAAAT
CCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCCTGCCATGAAACTT
CACATGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGA
AATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
CTAGTCGACGCAGTGCCCGCCCGCCCACCCACCCACTCATTTCGTCGATTGGCTTAAGCATACAA
AGTTCATTCCCAGTCTAAGATCGCCAAAGCATCGCTGGAGAACCTGGCCGA
Found at i:15968318 original size:26 final size:26
Alignment explanation
Indices: 15968282--15968334 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15968272 GTTGACTTAG
*
15968282 GCATCCGGAGTTCATTC-CTAGTCTAA
1 GCATACGGAGTTCATTCGC-AGTCTAA
15968308 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCATTCGCAGTCTAA
15968334 G
1 G
15968335 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCGCAGTCTAA
Found at i:15970974 original size:26 final size:26
Alignment explanation
Indices: 15970940--15970991 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15970930 TTGACTTAGT
15970940 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
* *
15970966 CATATGGAGTTCGTTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
15970992 ATCAGACCCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:15972772 original size:26 final size:26
Alignment explanation
Indices: 15972743--15972795 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15972733 GTTGACTTAC
15972743 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15972769 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15972795 G
1 G
15972796 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15973682 original size:26 final size:26
Alignment explanation
Indices: 15973646--15973698 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15973636 GTTGACTTAG
15973646 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15973672 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15973698 G
1 G
15973699 ATCGGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15975186 original size:904 final size:893
Alignment explanation
Indices: 15968064--15978855 Score: 12975
Period size: 903 Copynumber: 12.1 Consensus size: 893
15968054 TAGAAAACGA
* *
15968064 GTCTCTCTAGCCGGCGTAGTGCCCGCCCGTCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATAC
1 GTCTCTCTGGCCGGCGTAGTGCCCG--C--CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * * ** * **
15968129 GGAGTTCATTCCTAATCTAAGATTGGACCGGACCGAGGGTTGTGGTAGCAAAATTGGCAGCATAC
62 GGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGC
* * * * * * *
15968194 AGAAGGGGACCC-AGCTGATCCCCGGCTTGCGCATCCCACCCTTCTGGCCGGCTGAGCGCCCGCA
127 AGAGGGGGACCCGA-CCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGTA
* * *
15968258 CACTCGTTTCGTGGGTTGACTTAGGCATCCGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCAT
191 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * ** * * *
15968323 TCGCAGTCTAAGATCGAACCAGACCAAGGGTTGCGGCAACACATGCTGGGCTTGGGCATGTGCTG
256 TCCCAGTCTAAGATCGGATGA-ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
*
15968388 GTGCCGCATTTTTCTTC-GTCGGGG---CA----C----CATCGCCGGAGAACCTGACC-AGCGG
320 GTGCCGCATTTTTCTTCACT-GGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGA-CGG
** * * * * *
15968440 CATTGACGATCTGGCGATTGGGTGGGCCGGGGGGGTGTGCGCACATGATGTCCGATGGGTGCTGG
383 CATTGGGGTTCCGACGATCGGG-GGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
*
15968505 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGA
446 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* *
15968570 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATAGGGACACTTTTT
511 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
*
15968635 TCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
576 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
* * * *
15968700 AAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAAATCCTTTCGAAAAAATTTTAAAAAATC
641 AAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
* * * *
15968765 CTGAACCGTAAAAAGTTTTGAAAATAGTAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
706 CCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * * * *
15968830 ACTTGAAGGCTTAAGGGGCCATTGTATGAATTTACAAGTCATAAAACTGGCATTGGCAAGCAGAA
771 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
* * *
15968895 ATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCATGACTTGCGCATCCC
836 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* ** * *
15968953 TTCTCTCTGGCCGGCGTAGTGCCTACCCGCCCGGTCGTTTCATCGGTTGGCTTAGGCATACGGAG
1 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * * * * * *
15969018 TTCATTCCCAGTCTAAGATTAGATCAGACCGAGGGTTACAGTAGTAGGATCGGTAGCACGCAAAG
66 TTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAG
* * * * * * *
15969083 GGGGACCCGACCAATCTCCGGCTTGCGCATCCCTCCCCTCTGGCTGACTAAGCGCCCGTATGCTC
131 GGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGTACGCTC
*
15969148 GTTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-TA---AG---------A
196 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * ** * * **
15969195 -TC--AGATC-G--G-ACCGAAGGTTGTGATAGAACATGCTGGGCTCAGGCATGTGCTCCTGCCG
261 GTCTAAGATCGGATGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * *
15969253 CATTTTTCTTCACTGGGGTACCATCATCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGG
326 CATTTTTCTTCACTGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGG
*
15969318 TTCCGACGATCGTGGGGGCCGGGGGGTGTGCGCACATGGTGTGCGATGGGTGCTGGTACTTGGCC
391 TTCCGACGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* *
15969383 CATATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAG
455 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
*
15969448 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAATTGGGGACACTTTTTTCAAATGGT
520 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* *
15969513 CACAAAACCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAAAAAAATACAAG
585 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAG
*** * *
15969578 GATCGTGTCTATCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCTAACCGT
650 GATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGT
* * * *
15969643 AAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGG
715 AAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
*
15969708 CTTAAGGGACCATTGTATGACTTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
780 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
* * * *
15969773 TGTACCTAAACCCACCTGCCATCCTATCGATTCACGGCTTGCGCATCCC
845 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * *
15969822 GTCTCTCTGGCCGGCGTAGTGACCACCCGCTCGCCGGTCCGTTCGTTTCATCGGTTGGATTAGGC
1 GTCTCTCTGGCCGGCGTAGTG----CCCG--C-CC-GCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * * ** * * *
15969887 ATATGGAGTTCATTCACAATCTAAGATCGGACCAGATTGAGGGTTGTGGCAGTAGGATCGGTAGC
58 ATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGC
* * * * * *
15969952 ACGGAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATCGCGCCCCTCTGG-TCGACTGAGTGCC
123 ACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCT-GGCTGAGCGCC
*
15970016 CGTACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
187 CGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* * * ** *
15970081 TCATTCCTAGTCAAAGATTGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGT
252 TCATTCCCAGTCTAAGATCGGATGA-ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT
* * * *
15970146 GCTGGTGCTGCATTTTTCTTC-GTCGGGGCACCATCG-CTGGAGCATCACCGAAGAACCTGACCG
316 GCTGGTGCCGCATTTTTCTTCACT-GGGGCACCATCGTC-GGAGCATCGCCGGAGAACCTGACCG
* * * ** * *
15970209 ACAGCATTGTGGTTCCAACGATCGGGGGGGCCAAGGGGTGTGCACACATGATGTGCGATGGGGGC
379 ACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
** *
15970274 TTCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-ATCAACTCACACCCCCTTA
443 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA-GAACTCACACCCCCTTA
*
15970338 AAGAG-AGTTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
507 AAGAGCA-TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* *
15970402 TTTTTTCAAATGGTCACAACATCTTGTACACTTTGAGTTTTTAGCTGAATATTTTTT-TGCATGC
571 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTTGTGCATGC
* * *
15970466 CAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAA-TGCCTTCCGAAAAAATTTTA
635 CAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACT-CCTTCCGAAAAAATTTTA
* * * *
15970530 AAAAATCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATG
699 AAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
15970595 AAACTTCTCGTGAAGGCTTAAGGGACCATTGTATGAATTTATAAGCCATAAAAATGGCATTGGCA
764 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * * *
15970660 CGTAAAAATGTGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCT
829 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* *
15970725 GTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGTAG
1 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * ** *
15970790 TTCATTCCCAGTCTAAGATTAGACCAGACCAAGGGTTGCGGCAGCTCGATCGGCAGCACGTAGAG
66 TTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAG
* * * * *
15970855 GGGGACGCGACCGATGCCCAGCTTGGGCATCTCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTC
131 GGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGTACGCTC
* * * * *
15970920 ATTTCATGGGTTGACTTAGTCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCGTTCCCA
196 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * *
15970985 GTCTAAGATC--A-GACCCGATCGAGGTTGCGGGAGCACATGCTGGGCTTGGGCATGTGCTGGTG
261 GTCTAAGATCGGATGAACCGA--G-GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * ** * * ** * * *
15971047 CCACATTTTTCTTCGCCAGGGTACTATCACCGGAGCATCACCGGAGAACCTTACCGGCGGCATTG
323 CCGCATTTTTCTTCACTGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTG
* * * * * **
15971112 GGGTTCTGGCGATCGGGGGGGC-TGGGGTTTGCGCACATGATGTGCGATGGGTGCTCATACTTGG
388 GGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* * * *
15971176 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAAAAGTCACACCCCTTTAAAGAGCATTTG
453 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
*
15971241 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCCAATG
518 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* *
15971306 GTCACAAAATCTTGTACACTTCGAGTGTTTAGCTGAA-TTTTTTGCGCATGCCAAAAAAAAATAC
583 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AAAAAAAATAC
* ***
15971370 ATGGATCATGGCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAAC
647 AAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAAC
*
15971435 CGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
712 CGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
***
15971500 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGA
777 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
*
15971565 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGAGCATCCC
842 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * * *
15971617 GTTTCTCTGGCCGGTGTACTGCCCGTACGCCCGCGCGTCCACTCGTTTCGTTGGTTGGCTTAGGC
1 GTCTCTCTGGCCGGCGTAGTG-CC---CG-CC-CGC--CCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * * * * * * * * * *
15971682 ATACGGAGTTCATGCCCAGTCCAGGATTAGATCGGACCAAGGTTTACGACAGCAAGATCAGCAGC
58 ATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGC
* * * * *
15971747 ACGTAGAGGGGGACCCGACCGATCCCCGGCTTGC-CAACCCGCCCCTCTGGCTGGTTGAGTGCCC
123 ACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCC
* * * * * *
15971811 GCATGCTCGTTTCGTGGGTTGACTTAGGTATACGGAGTTCATTTCTAGTCTAAGCATACGAAGTT
188 GTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * * * * *
15971876 CATTCCCAGTCTGAAGATCAGACCGGATCGAGGGTTGCGAGGAGCAACATGCTGGGCTTGGGCAT
253 CATTCCCAGTCT-AAGATCGGA-TGAACCGAGGGTTGCG-GCAGC-ACATGCTGGGCTCGGGCA-
* ** * * *
15971941 TGTGCTGGTGCC-CATATTTTTCTTTCGCCAGGGTACCATCATCGGAAGTATCGCCGGAGGAATC
313 TGTGCTGGTGCCGC--ATTTTTC-TTCACTGGGGCACCATCGTCGG-AGCATCGCCGGA-GAA-C
* * ** *
15972005 TTGACCGGC-GCATTGGGGTTCCGACGATCGTGGGGGCGCGGGTTGTGTGCG-ACATGGT-TGCG
372 CTGACCGACGGCATTGGGGTTCCGACGATCG-GGGGGC-CGGGGGGTGTGCGCACATGATGTGCG
* *
15972067 AATGGGTGCTGGGTACTTGGCCCTTATATTAG-CCCCTATCCCTCATCCAACCTCGAGGAACTCA
435 -ATGGGTGCT-GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA-GAACTCA
* *
15972131 CACCCCCTT-AAGAGC-TTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATT-AAGTTTCTGAAA
497 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
15972193 T-GGGACACTTTTTTTCAAATTGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTCAAATTTT
562 TGGGGACAC-TTTTTTCAAA-TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
15972257 TTGTGCATGCCAAAAAAAATGCAAGGATTCACTTCTTACCAAGTTTGGGGCCAAAAACTCCTTCT
625 TTGTGCATGCCAAAAAAAATACAAGGA-TCACATC-TACCAAGTTTGGGGCC-AAAACTCCTTCC
* * *
15972322 G-AAAAATTTTAAAAAAATTCCCGAACCGTTAAAAAG-TTTCAAAATCATGGAAAATAGAAAACG
687 GAAAAAATTTT-AAAAAA-TCCCGAACCG-TAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACG
*
15972385 AGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
749 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* * * * *
15972450 AAAATGGCATTGGCAAGCAAAAATGTGAAGATGTGCCTAAACCCACCTACCAGCCTTTCGATCCA
814 AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
*
15972515 CGACTTGCGCATCCC
879 CGGCTTGCGCATCCC
* * * *
15972530 GTCTCTCTGGCTGACATAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCATAGGCATACGGAG
1 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * * *
15972595 TTCATTCCTAGTCTAAGATTGGACCAGACCGAGGGTTGTGGCAGTAGGATTGGCAGCACGTAGA-
66 TTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAG
* * * * * *
15972659 GGGGTCCCGACCGATCCCCGGCTTGCTCATCCTGCCCCTCTGGCCGACTGAGCGCCCGTACGCTC
131 GGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGTACGCTC
* *
15972724 GTTTCGTGGGTTGACTTACGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCA
196 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * *
15972789 GTCTAAGATCGGACTGGACCGAGGGTTACGGCAGCACATACTGGGCTCTGGCATGTGCTGGTGCC
261 GTCTAAGATCGGA-TGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * * * * *
15972854 GC-TGTTTTCTTCACCGAGGCACCATCGCCGGAGCGTCGTCGGAGAGCCTGACCGACGGCATTGG
325 GCAT-TTTTCTTCACTGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGG
* * *
15972918 GGTTCCGACGATCAGGGGGACCGGGGGGGTTTGCGTACATGATGTGCGATGGGTGCTGGTACTTG
389 GGTTCCGACGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
15972983 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
452 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
15973048 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
517 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * *
15973113 GGTCACAAAATCTTGTTCACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAGAAAAAATAC
582 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAC
* ** * * * *
15973178 ATGGATCATGTCTACCAAGTTAGGGGCCAAAACTCTTTCTGAAAAAA-TTTAAGAAAATCCCAAA
647 AAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA-AAAATCCCGAA
* * *
15973242 CCGTAAAAA-TTTTGAAAATCGTGAAAATTAGAAAACGAGTCATCTTGCCATGAAACTTCACGTG
711 CCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
15973306 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
776 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
* * *
15973371 AAGATGTGCCTAAATCCACCTACCACCCTATCCATCCACGGCTTGCGCATCCT
841 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * * * *
15973424 GTTTCTCTGGCAGGCATAGTGCCCGCCCGCCCGCGCGTCCACTCATTCCATTGGTTGGCTTAGGC
1 GTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CC-CGC-T-C-GT--TT-CGTCGGTTGGCTTAGGC
* * * * * *
15973489 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGACAGCAAGATCGACAAC
58 ATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGC
* * * * * *
15973554 ACGCAGAGGAGGACCCGACCGATCTCCGGCTTGCGCATCCCGCCTCTCTGGCCGGCTGAGTGCCC
123 ACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCC
* *
15973619 GCACGCTCATTT-GATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
188 GTACGCTCGTTTCG-TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* * * **
15973683 TCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGCAGCACATACTGGGCTCCTGCATGT
252 TCATTCCCAGTCTAAGATCGGA-TGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT
* * * * * * *
15973748 GCTGGTGCCACTTTTTTCTTCA-TCGAGGCACCATAGCCGGAGCGTC-CTCGGAGAGCCTGACCG
316 GCTGGTGCCGCATTTTTCTTCACT-GGGGCACCATCGTCGGAGCATCGC-CGGAGAACCTGACCG
* * * *
15973811 ACGGCATTGGGGTTCCGGCAATCGGGGGGACCGGGGGGCTTTGCGTACATGATGTGCGATGGGTG
379 ACGGCATTGGGGTTCCGACGATCGGGGGG-CCGGGGGG-TGTGCGCACATGATGTGCGATGGGTG
* *
15973876 CTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTTGAGAACTCACACCCCCCTT
442 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCCTT
* * *
15973941 AAAGAGCATTTGAGATTTTACAGGTCTGCTGTCAGTAGCCATTAAAGTGTCTGAAATGGGGACCC
506 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* *
15974006 TTTTTTCAAATGGTCCCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCC
571 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * *
15974071 AAAAAAAAGACAAGGATCACACCTACCAAGTTTGGGGCCATAAA-TCCTTCC-ATAAAAATTTAA
636 AAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCA-AAACTCCTTCCGA-AAAAATTTTA
* * ** * *
15974134 AAAAATCTCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATA
699 AAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
15974199 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
764 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * *
15974264 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACAACCCTATCGATCTACGGCTTGCGCATCCC
829 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* *
15974329 GTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCAGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
1 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * *** * * * *
15974394 TTCATTCCCAGTCCAAGATTGGACCGGGTTGAGGGTTGCAGTAGCAGGATTGGCAGCACACAGAG
66 TTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAG
* * * *
15974459 GGGGACCCGACCGGTCCCTAGTTTGCGCATCCCGCCCCTCTGGCTAGCTGAGCGCCCGCATA-G-
131 GGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCG--TACGC
* * * *
15974522 TCATTTCGTGTGTTGACTTAGGCGTACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCC
194 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
*
15974587 CAGTCTAAGATCGGGATGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTG
259 CAGTCTAAGATC-GGATGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
** * * * * * * *
15974652 ATGTATTTTTCCTAACTGGGGCAGCATCGTCAGAGCATCACCAGAGAACCTGACC-AGCGGCATT
323 CCGCATTTTTCTTCACTGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGA-CGGCATT
* * ** *
15974716 GGGGTTCTGACGATCGGGGGGACC-GGGTGTGTGCTTACATGATGTGCGATGGGTGCTAGTACTT
387 GGGGTTCCGACGATCGGGGGG-CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* * *
15974780 GGCCCTTATATTGGCCCCCTATCCGTCATCAAACCTCAAAAACTCACACCCCCTTAAAGAGCATT
451 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* * * * * *
15974845 TCAGATTTTACAGTTTTGCTGCTAGTAGCAATTAAAGTCTCTGAAATGGGGACAATTTTTTTTTT
516 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC-A---------C
* **
15974910 TTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTCCTAGCTGAATTTTTTTGTGCATGCC
571 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* **
15974975 AAAAAAAATACAAGGATCACATCTACCACGTTTGGGGCCAAAACTCCTTCTAAAAAAATTTTAAA
636 AAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
* * * * *
15975040 AAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATATAAAATGAGTCGTCTTGCCATGAA
701 AAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
*
15975105 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATTGGCATG
766 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
**
15975170 CAGAAATATGAAGATGTGCCTAAACCTGCCTACCACCCTATCGATCCACGGCTTGCGCATCCC
831 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * *
15975233 GTCTCTTTAGCCAGCGTAGTGCCCGCCCGCTCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATAC
1 GTCTCTCTGGCCGGCGTAGTGCCCG--C-C-CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* ** *** * * * * * *
15975298 GGAGTTCATTCTCAGTCTAAGATCAGATTGGACCGATGGTTGTGGTAGTAGGATCCGCAGCACTC
62 GGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGC
* * * *
15975363 AGAGGGGGACCCGACCGAT---C--C-T---C-T---G--GC-C-AG-T---TGAACGCCCGCAC
127 AGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGTAC
* * *
15975407 GCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATT
192 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * * ** *
15975472 CCCAGTCTAAGATTGGACT-AGACCAAGGGTTACAACAGCACATGCTGGGCTCCGGCATGTGCTG
257 CCCAGTCTAAGATCGGA-TGA-ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * * * ** * *
15975536 GTGTCACATTTTTCTTC-GTCAGGGCACCATCACCGGAGCGTCGTCGGAGAACCTGACCGACGGC
320 GTGCCGCATTTTTCTTCACT-GGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGC
* *
15975600 ATTGGGGTTCCGACGATCAGGGGGACCGGGGGGTGTGCGCACATGATGTGCGATGCGTGCTGGTA
384 ATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
*
15975665 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAGCCTCGAGAACTCACACCCCCTTAAAGAGC
448 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
15975730 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
513 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * *
15975795 GAATGGTCACAAAATCTTGTACCCTTCGAGTTTTTAGCTGAATTCTTTTGTGCATGCCAAAAAAA
578 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAA
* * * *
15975860 ATACAACGATCACACCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTCAAAAAAATCC
643 ATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT-TAAAAAATCC
* * *
15975925 CAAACAGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
707 CGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* *
15975990 CGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATAAAAATGGCACTGGCATGCAGAAA
772 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
* * *
15976055 TATGAAGATGTGCCTAAACCCACCTATCACCCTATCGATGCACGGCTTGTGCATCCC
837 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
** * * * * *
15976112 GTCTAACTGGCCGACGTAGTGCCCGCCCGTCAGCCCGTTTCGTCGATTGGCTTAGGCATACGGAG
1 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * * * * *
15976177 TTCATTCCCAGTCTAAGATTGGACTAGGCTGAGGGTTGCAGTAGCAGGATCAGCAGCATGCAGAG
66 TTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAG
* * * * *
15976242 AGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTAGCGGGTTGAGCGCCCGTACGCTT
131 GGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGTACGCTC
* * ** *
15976307 GTTTCGTGGGATGACTAAGGTGTACGAAGTTCATTCCCAG--T----ATA---A--T-A-T--C-
196 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * ** *
15976356 G----A-A-CCG--G-ACTGAGGGTTACGATAGCACATGCTGCGCTCGGGCATGTGCTGGTGCCG
261 GTCTAAGATCGGATGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
** * *
15976412 CATTTTTCTT-TGTCGGGGCACCATCGTC-GAGCATCGTCGGAGAACCTGACCGACGGCATTAGG
326 CATTTTTCTTCACT-GGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGG
* * * *
15976475 GTTTCGACGATCGGGGGGCCGGGGTGTGTGCGCACATGATGTGCAATGAGTGCTGGTACTTGGCC
390 GTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* *
15976540 CTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACCCCCCCTTAAAGAGCATTTGAG
455 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
* ** * * *
15976605 ATTTTACAGGTTTGCTACTGGTATTCC-TTAAAGTGTCTGAAATGGGAACACTTTTTTCGAATGG
520 ATTTTACAGGTTTGCTGCCAGTA-GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* *
15976669 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAAGAAAAATACAA
584 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAA
* * * * * *
15976734 GGATCATATCTACCAGGTTTAGGGCCAAAACTCCTTTCGAAGAAATTTTAAAAAATCCCGAACAG
649 GGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCG
* * * * *
15976799 CAAAAAGTTTTGAAAATTGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCAGGTGAAG
714 TAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* * *
15976864 GCTTAAGGGACCATTGTATGAATTTACAAGCCTTAAAAATGGCATTGGCATCCAAAAATATGAAG
779 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* **
15976929 ATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCTTATCCC
844 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * *
15976979 ATCTCTCTGGCCGGTGTAGTACCCGCCCACCCGCTCGGTTT-GTCGGTTGGCTTAGGCATACGGA
1 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTC-GTTTCGTCGGTTGGCTTAGGCATACGGA
* ** * * * * *
15977043 GTTCATTCCTAGTCTAAGATCAGATCAGACCAAGGGTTGTGGCAGCA-CAT--GCTAGGCTCGGG
65 GTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGC-A-GCAC--G
* ** ** **** * * * ** * * * * *
15977105 CATGTGCTGGTGCCGCATTTTTCCTCA-CTGGGGCA--CC-ATCGTC-GG-AGAACCTGACCGTC
126 CA-GAGGGGGACCCG-ACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCTG--GCTGAGCGCC
* * *
15977164 CGCATGCTCGTTTCGTGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
187 CGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* * ** *
15977229 TCATTCCCAATCTAAGATCAGACCAAACCGAGGGTTGCGGCAGCACATG-TAGGGCTTGGGCATG
252 TCATTCCCAGTCTAAGATCGGA-TGAACCGAGGGTTGCGGCAGCACATGCT-GGGCTCGGGCATG
* * ** * * **
15977293 TGTTGGTGTCGCATTTTTCTTCGTTGGGGCTCCATCGTCGGAGCATCGTCGGAGAACCTGGGC-A
315 TGCTGGTGCCGCATTTTTCTTCACTGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGA
* * *
15977357 GCGGTATTGGGGTTCCGACGATCGGGGGGCTGGGGGGTGTGCGCACATGATATGCGATGGGTGCT
380 -CGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
**
15977422 CATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
444 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
15977487 GAGCATATGAGATTTTACAGGTTTGCTG-CAGTAGCC----AAGTGACTGAAATGGGGACACTTT
509 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * *
15977547 TTTCGAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTG-ATTGTTTTTATGCATGCCAA
574 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTTGTGCATGCCAA
* * * * *
15977611 GAAAAATGCAAGGATCACATCTACCAAGTTCGGGGCCAAAAATCCTTCC-AAAAAATTTCAAAAA
638 AAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT-TAAAA
* *
15977675 AATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATGGAAAATGAGTCGTCTTGCCATGAAA
702 AATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* *
15977740 CTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATAAAAATAGCATTGGCATGC
767 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* *
15977805 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGGATCTC
832 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * * * *
15977867 GTCTCACTGGCCGACGTAGTGCCCGCCCGCCAGCCCGTTT-GATCAGTTGGCTTAGGCATACAGA
1 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCG-TCGGTTGGCTTAGGCATACGGA
* * * * * * *
15977931 GTTCATTCCCTA-TCTAAGATTGGACTAGGCTGAGGGTTACGGTAGCAGGATCAGCAGCACGTAG
65 GTTCATTCCC-AGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAG
* *
15977995 AGGGGGACCCGACCGATCCCCAGCTTGCGTATCCCGCCCCTCTGGCTGGCTGAGCACCCGTACGC
129 AGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGTACGC
* * * * * *
15978060 GCGTTTCATGAGTTGACTAAGGCGTACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
194 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* ** * * ** *
15978125 CAGTCTAAGATCAGACCAGACTGAGGGTTACGATAGCACATGCTGCGCTCGGGCATGTGCTGGTG
259 CAGTCTAAGATCGGATGA-ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
**
15978190 CCGCATTTTTCTT-TGTCGGGGCACCA---TC---G--T---CGGAGAACCTGACCGACGGCATT
323 CCGCATTTTTCTTCACT-GGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATT
* * * * * *
15978243 AGGGTTTCGGCGATCGGGGGGCCGGGGTGTGTGCGCACATGATGTGCAATGGGTGCTGGTTCTTG
387 GGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* *
15978308 GCCCTGATATTGGCCCCCTATCCCTCATCAAACCTTC-AGAAGTCAC-CCCCCTTAAAGAGCATT
452 GCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCGAGAACTCACACCCCCTTAAAGAGCATT
* *
15978371 TGAGATTTTACAAGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
516 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* * * *
15978436 AGGTCATAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGTATGCCAAAAAAAAAA
581 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATA
** * * *
15978501 CAAGGATCATGTCTACCAAGTTTGGGGTCGAAAA-TCCTTCCGAAATAATTTTAAAAAATCCCAA
646 CAAGGATCACATCTACCAAGTTTGGGG-CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGA
* * *
15978565 ACCGTAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACAT
710 ACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
** *
15978630 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGAAAAGCAGAAATAT
775 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATAT
* *
15978695 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGGTTGTGCAT-CC
840 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * *
15978748 GTCTCTCAGGCCGGCGTAGTGCCCACCCACCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
1 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * *
15978813 TTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGGCA
66 TTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCA
15978856 ACACAAGCTG
Statistics
Matches: 8556, Mismatches: 1083, Indels: 536
0.84 0.11 0.05
Matches are distributed among these distances:
859 53 0.01
860 1 0.00
862 2 0.00
864 8 0.00
865 2 0.00
866 56 0.01
867 265 0.03
868 276 0.03
869 526 0.06
870 113 0.01
871 2 0.00
872 3 0.00
873 2 0.00
874 1 0.00
875 101 0.01
876 7 0.00
877 216 0.03
878 237 0.03
879 206 0.02
880 4 0.00
881 93 0.01
882 294 0.03
883 21 0.00
884 2 0.00
885 182 0.02
886 24 0.00
887 200 0.02
888 543 0.06
889 172 0.02
890 15 0.00
891 19 0.00
892 517 0.06
893 180 0.02
894 350 0.04
895 295 0.03
896 88 0.01
897 397 0.05
898 77 0.01
899 217 0.03
900 142 0.02
901 29 0.00
902 119 0.01
903 921 0.11
904 579 0.07
905 375 0.04
906 21 0.00
907 21 0.00
908 144 0.02
909 103 0.01
910 62 0.01
911 63 0.01
912 20 0.00
913 183 0.02
914 7 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (893 bp):
GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
TTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAG
GGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGTACGCTC
GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
GTCTAAGATCGGATGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
CATTTTTCTTCACTGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGG
TTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGG
ATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTA
AAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
Found at i:15975460 original size:26 final size:26
Alignment explanation
Indices: 15975430--15975482 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15975420 GTTGACTTAG
* *
15975430 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15975456 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15975482 G
1 G
15975483 ATTGGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15977221 original size:26 final size:26
Alignment explanation
Indices: 15977192--15977244 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15977182 GTTGACTTAG
*
15977192 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
15977218 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
15977244 G
1 G
15977245 ATCAGACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:15977735 original size:888 final size:883
Alignment explanation
Indices: 15976366--15978913 Score: 3253
Period size: 888 Copynumber: 2.9 Consensus size: 883
15976356 GAACCGGACT
*
15976366 GAGGGTTACGATAGCACATGCTGCGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGC
1 GAGGGTTACGACAGCACATGCTGCGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGC
* *
15976431 ACCATCGTC-GAGCATCGTCGGAGAACCTGACCGACGGCATTAGGGTTTCGACGATCGGGGGGCC
66 ACCATCGTCGGAGCATCGTCGGAGAACCTGGCAG-CGGCATTAGGGTTTCGACGATCGGGGGGCC
*
15976495 GGGGTGTGTGCGCACATGATGTGCAATGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
130 GGGGTGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * *
15976560 CTCATCAAACCTTGAGAACTCACCCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACTG
195 CTCATCAAACCTCGAGAACTCA-CCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTA
* *
15976625 GTATTCCTTAAAGTGTCTGAAATGGGAACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTC
259 GTA-GCC-T-AAGTGTCTGAAATGGGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTC
* *
15976690 GAGTTTTTAGCTGATTTTTTTTGTGCATGCCAAGAAAAATACAAGGATCATATCTACCAGGTTTA
321 GAGTTTTTAGCTGA-TTTTTTTGTGCATGCCAAGAAAAATACAAGGATCATATCTACCAAGTTTG
* * * * *
15976755 GGGCCAAAACTCCTTTCGAAGAAATTTTAAAAAATCCCGAACAGCAAAAAGTTTTGAAAATTGTG
385 GGGCCAAAAATCC-TTCCAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATTGTG
*
15976820 AAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCAGGTGAAGGCTTAAGGGACCATTGTATGA
449 AAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * * *
15976885 ATTTACAAGCCTTAAAAATGGCATTGGCATCCAAAAATATGAAGATGTGCCTAAACCCACCAACC
514 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * * *
15976950 ACCCTATCGATCCACGGCTTGCTTATCCCATCTCTCTGGCCGGTGTAGTACCCGCCCACCCGCTC
579 ACCCTATCGATCCACGGCTTGCTCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCAGCTC
* *
15977015 GGTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCAGACCAAGGGT
644 -GTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGA-CAGACCGAGGGT
15977080 TGTGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCCTCACTGGGGCACCATC
707 TGTGGCAGCACA-GCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCCTCACTGGGGCACCATC
* ** * * * * *
15977145 GTC-GG-AGAACCTGACCGTCCGCATGCTCGTTTCGTGAGTTGACTTAGGCATACGGAGTTCATT
771 CTCTGGCAG--CCTGACCACCCGCACGCGCGTTTCATGAGTTGACTAAGGCATACGAAGTTCATT
15977208 CCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAAACC
834 CCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAAACC
* * * * * * * *
15977258 GAGGGTTGCGGCAGCACATG-TAGGGCTTGGGCATGTGTTGGTGTCGCATTTTTCTTCGTTGGGG
1 GAGGGTTACGACAGCACATGCT-GCGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGTCGGGG
* * * *
15977322 CTCCATCGTCGGAGCATCGTCGGAGAACCTGGGCAGCGGTATTGGGGTTCCGACGATCGGGGGGC
65 CACCATCGTCGGAGCATCGTCGGAGAACCT-GGCAGCGGCATTAGGGTTTCGACGATCGGGGGGC
* * * * **
15977387 TGGGGGGTGTGCGCACATGATATGCGATGGGTGCTCATACTTGGCCCTTATATTGGCCCCCTATC
129 CGGGGTGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
*
15977452 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATATGAGATTTTACAGGTTTGCTGC-
194 CCTCATCAAACCTCGAGAACTCAC-CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCT
* *
15977516 AGTAGCC-AAGTGACTGAAATGGGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTTGA
258 AGTAGCCTAAGTGTCTGAAATGGGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTCGA
* * * *
15977580 GTTTTTAGCTGATTGTTTTTATGCATGCCAAGAAAAATGCAAGGATCACATCTACCAAGTTCGGG
323 GTTTTTAGCTGATT-TTTTTGTGCATGCCAAGAAAAATACAAGGATCATATCTACCAAGTTTGGG
* * *
15977645 GCCAAAAATCCTTCCAAAAAATTTCAAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAA
387 GCCAAAAATCCTTCCAAAAAATTT-TAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATTGTGAA
* *
15977710 AAATGGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAAT
451 AAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
*
15977775 TTACAAGCCATAAAAATAGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
516 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
** * * * * *
15977840 CCTATCGATCCACGGCTTGCGGATCTCGTCTCACTGGCCGACGTAGTGCCCGCCCGCCAGCCCGT
581 CCTATCGATCCACGGCTTGCTCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCAGCTCGT
* * * * *
15977905 TTGATCAGTTGGCTTAGGCATACAGAGTTCATTCCCTA-TCTAAGATTGGACTAGGCTGAGGGTT
646 TTG-TCGGTTGGCTTAGGCATACGGAGTTCATT-CCTAGTCTAAGATCGGAC-AGACCGAGGGTT
* * * * * ** **** * * * *
15977969 ACGGTAGCAGGATCAGC-A-GCACGTAG-A-G-G-GGGACCCG-ACCGATCCCCAGCTTGCGTAT
708 ---GTGGCAGCA-CAGCTAGGCTCG-GGCATGTGCTGGTGCCGCATTTTTCCTCA-CTGGGGCA-
** * * * * *
15978027 CCCGCCCCTCTGGCTGGCTGAGCACCCGTACGCGCGTTTCATGAGTTGACTAAGGCGTACGAAGT
766 -CC-ATCCTCTGGCAGCCTGACCACCCGCACGCGCGTTTCATGAGTTGACTAAGGCATACGAAGT
* * *
15978092 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT
829 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAAACC
*
15978147 GAGGGTTACGATAGCACATGCTGCGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGC
1 GAGGGTTACGACAGCACATGCTGCGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGC
* * *
15978212 ACCATCGTCGGAG-AAC--C--TG-ACC--G-A-CGGCATTAGGGTTTCGGCGATCGGGGGGCCG
66 ACCATCGTCGGAGCATCGTCGGAGAACCTGGCAGCGGCATTAGGGTTTCGACGATCGGGGGGCCG
* *
15978267 GGGTGTGTGCGCACATGATGTGCAATGGGTGCTGGTTCTTGGCCCTGATATTGGCCCCCTATCCC
131 GGGTGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* *
15978332 TCATCAAACCTTC-AGAAGTCACCCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCTAG
196 TCATCAAACC-TCGAGAACTCACCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAG
* * *
15978396 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAAGGTCATAAAATCTTGTACACTTCG
260 TAGCC--T-AAGTGTCTGAAATGGGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTCG
* * * *
15978461 AGTTTTTAGCTGAATTTTTTTGTGTATGCCAAAAAAAAAACAAGGATCATGTCTACCAAGTTTGG
322 AGTTTTTAGCTG-ATTTTTTTGTGCATGCCAAGAAAAATACAAGGATCATATCTACCAAGTTTGG
* * * *
15978526 GGTCGAAAATCCTTCCGAAATAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATTGTGA
386 GGCCAAAAATCCTTCC-AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATTGTGA
* *
15978591 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAA
450 AAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
** *
15978656 TTTACAAGCCATAAAAATGGCATTGAAAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
515 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * *
15978721 CCCTATCGATCCACGGGTTG-TGCAT-CCGTCTCTCAGGCCGGCGTAGTGCCCACCCACCTGCTC
580 CCCTATCGATCCACGGCTTGCT-CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCAGCTC
* * *
15978784 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGT
644 GTTT-GTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGA-CAGACCGAGGGT
** * * ** * *
15978849 TACGGCAACACAAGCTGGGCTTTGGCATGTGCTGGTGCCGCATTTTTCTTC-GTCGGGGCACCAT
707 TGTGGCAGCAC-AGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCCTCACT-GGGGCACCAT
15978913 C
770 C
15978914 ACTGGAGGAT
Statistics
Matches: 1412, Mismatches: 202, Indels: 96
0.83 0.12 0.06
Matches are distributed among these distances:
877 38 0.03
878 116 0.08
879 4 0.00
880 8 0.01
881 83 0.06
882 300 0.21
883 22 0.02
884 5 0.00
885 6 0.00
886 11 0.01
887 20 0.01
888 380 0.27
889 168 0.12
890 5 0.00
891 13 0.01
892 68 0.05
893 162 0.11
894 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (883 bp):
GAGGGTTACGACAGCACATGCTGCGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGC
ACCATCGTCGGAGCATCGTCGGAGAACCTGGCAGCGGCATTAGGGTTTCGACGATCGGGGGGCCG
GGGTGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
TCATCAAACCTCGAGAACTCACCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGT
AGCCTAAGTGTCTGAAATGGGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTCGAGTT
TTTAGCTGATTTTTTTGTGCATGCCAAGAAAAATACAAGGATCATATCTACCAAGTTTGGGGCCA
AAAATCCTTCCAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATTGTGAAAAATA
GAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
CGATCCACGGCTTGCTCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCAGCTCGTTTGTC
GGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACAGACCGAGGGTTGTGGCAGC
ACAGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCCTCACTGGGGCACCATCCTCTGGCAGC
CTGACCACCCGCACGCGCGTTTCATGAGTTGACTAAGGCATACGAAGTTCATTCCCAGTCTAAGC
ATACGGAGTTCATTCCCAATCTAAGATCAGACCAAACC
Found at i:15978106 original size:27 final size:27
Alignment explanation
Indices: 15978076--15978133 Score: 91
Period size: 26 Copynumber: 2.2 Consensus size: 27
15978066 CATGAGTTGA
*
15978076 CTAAGGCGTACGAAGTTCATTCCCAGT
1 CTAAGGCATACGAAGTTCATTCCCAGT
*
15978103 CTAA-GCATACGGAGTTCATTCCCAGT
1 CTAAGGCATACGAAGTTCATTCCCAGT
15978129 CTAAG
1 CTAAG
15978134 ATCAGACCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
26 24 0.86
27 4 0.14
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.26
Consensus pattern (27 bp):
CTAAGGCATACGAAGTTCATTCCCAGT
Found at i:15979701 original size:26 final size:26
Alignment explanation
Indices: 15979671--15979729 Score: 95
Period size: 26 Copynumber: 2.3 Consensus size: 26
15979661 GTTGACTTAG
*
15979671 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTACATTCCCAGTCTAA
15979697 GCATACGGAGTACATTCCCAGTCTAA
1 GCATACGGAGTACATTCCCAGTCTAA
15979723 -CAT-CGGA
1 GCATACGGA
15979730 CCGAACCAAG
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
24 4 0.12
25 3 0.09
26 25 0.78
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (26 bp):
GCATACGGAGTACATTCCCAGTCTAA
Found at i:15981083 original size:949 final size:959
Alignment explanation
Indices: 15979666--15981551 Score: 2548
Period size: 949 Copynumber: 2.0 Consensus size: 959
15979656 CATGGGTTGA
* * *
15979666 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTACATTCCCAGTCTAACATCGGAC
1 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGAAGTACATTCCCAGTCTAACATCGAAC
*
15979731 CGAACCAAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
66 CGAACCAAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGA
* * * *
15979796 CGAGGCACCATCGTCGGAGCATCGCCAGAGAACCTGCCTGGCGGCATTGGGCTTCCGGTGATCGG
131 CCAGGCACCATCGCCGGAGCATCGCCAGAGAACCTGCCTGGCGACATTGGGCTTCCGATGATCGG
** * * * * * *
15979861 GGGGGCCTGGGGGGGGGTTGTGCGCACATGATGTGCGATGGGTGCTGGTTTTGGCCCTTATATCG
196 GGGGGCC---GACGGGGTAGTGCGCACATAATGTGCAATGGGTGCCGATCTTGGCCCTTATATCG
15979926 GCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
258 GCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
*
15979991 GTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAAAAAATC
323 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAAAAAATC
* * *
15980056 TTGTACGCTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAACACAAGGATCACGTC
388 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATACCAAAAAAAACACAAGGATCACGTC
* * * ** * *
15980121 TACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTTAAAAATCCTGAACCGTAAAAAGTTT
453 TACCAAATTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTA
* * *
15980186 TGAAAATCATGAAAAATAGAAAACGAGTGGGCTTGCCATGAAACTTCA-TG-TG-AA-GG-C-T-
518 CGAAAATCATGAAAAATAGAAAACGAGTCGGCTTGCCATGAAACTTCACTGAGGAAAGGGACTTA
* * * *
15980244 TG-G-CATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
583 TGAGCCATAAAAATGGAATTAGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* ** * * *
15980307 ATCCATCCCCGGCTTGTGCATCCCATCTCTCTGGCCAGCGTAGTGCCCG-CCGCCCGCCCGCTCG
648 ATCCATCCACGGCTTACGCATCCCATCTCTCTGGCCAGCGTAGTGCCCGCCCGCCAGACCGCCCG
* *
15980371 CTCATTTCGTCTGTTGGCTTAGGCATACGGAGTTCACTCCCAG-ACTAAGATCGGA-TCGGACCG
713 CTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCACTCACAGTA-TAAGATCGGACT-GGACCG
* * * * *
15980434 AGGGATGCGGCAGTAGGATCTGCAGCACGCAGAGGGGGACCCGACCAATCCCCAGGTTGCGCATC
776 AGGGATGCGACAGCAGGATCGGCAGCACGCAAAGGGGGACCCGACCAAT-CCCAGCTTGCGCATC
*
15980499 CCGCCCCTCTGGCCAGCTGAGCACCCGTACACTCGTTTTGTGGGTTGACTTACGCATACGGAGTT
840 CCG-CCCTCTGGCCAGCTGAGCACCCGCACACTCGTTTTGTGGGTTGACTTACGCATACGGAGTT
15980564 CATTCGCAGTCTAAGATCAGACTGGACCGAGGGTTGCAGACACTTTTTTCAAGTGG
904 CATTCGCAGTCTAAGATCAGACTGGACCGAGGGTTGCAGACACTTTTTTCAAGTGG
* * * *
15980620 CTTAGGCATACAGAGTTCATTCCTAGTCTAAGCGTACGAAGTTCATTCCCAGTCTAAGATCGAAA
1 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGAAGTACATTCCCAGTCTAACATCG-AA
* ** * *
15980685 CCGGACTGAGGGTTGCAGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTC-
65 CCGAACCAAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG
** *
15980749 ACCAGTGCACCATCGCCGGAGCATCGCTGGAGAACCTGACC-GGCGACATTGGGGTTCCGATGAT
130 ACCAG-GCACCATCGCCGGAGCATCGCCAGAGAACCTG-CCTGGCGACATTGGGCTTCCGATGAT
*
15980813 C-GGGGGGCC-ACGGGG-AGTGCGCACATAATGTGCAATGGGTGCCGATACTTGGCCCTTATATT
193 CGGGGGGGCCGACGGGGTAGTGCGCACATAATGTGCAATGGGTGCCGAT-CTTGGCCCTTATATC
* **
15980875 GGCCTCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
257 GGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
*
15980940 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGACACTTTTTTCAAATGGTCACAAAAT
322 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAAAAAAT
* * *
15981004 CTTGTACACTTTGATTTTTTAGCTGAATTTTTTTATGCATACCAAAAAAAATACAAGGATCACGT
387 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATACCAAAAAAAACACAAGGATCACGT
15981069 CTACCAAATTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTT
452 CTACCAAATTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTT
* *
15981134 ACGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCATAAGGG
517 ACGAAAATCATGAAAAATAGAAAACGAGTCGGCTTGCCATGAAACTTCAC-TG-AGG-A-AAGGG
15981199 ACCATTGTATGAATTTACAAGCCATAAAAATGGAATTAGCACGCAGAAATATGAAGATGTGCCTA
578 A-C--T-TATG--------AGCCATAAAAATGGAATTAGCACGCAGAAATATGAAGATGTGCCTA
* * * *
15981264 AACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTTTGGCCGGCGTAGTGCCC
631 AACCCACCTACCACCCTATCCATCCACGGCTTACGCATCCCATCTCTCTGGCCAGCGTAGTGCCC
* ** * * * *
15981329 GCCCGCCATAGTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCACTGTATAA
696 GCCCGCCAGACCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCACTCACAGTATAA
* * ** * * *
15981394 GATTGGACTGGATCGAGGTTTGCGATAGCAGGATCGGCAGCACGCAAAGGGGGACCCGATCGATC
761 GATCGGACTGGACCGAGGGATGCGACAGCAGGATCGGCAGCACGCAAAGGGGGACCCGACCAATC
* * ** *
15981459 CCAGCTTGTGCATCCCGCCCTTTGGCCAGCTGAGTGCCCGCACGCTCGTTTTGTGGGTTGACTTA
826 CCAGCTTGCGCATCCCGCCCTCTGGCCAGCTGAGCACCCGCACACTCGTTTTGTGGGTTGACTTA
* *
15981524 GGCATACGGAGTTCATTCTCAGTCTAAG
891 CGCATACGGAGTTCATTCGCAGTCTAAG
15981552 CATACGGAGT
Statistics
Matches: 805, Mismatches: 95, Indels: 45
0.85 0.10 0.05
Matches are distributed among these distances:
949 216 0.27
950 113 0.14
951 2 0.00
953 1 0.00
954 67 0.08
955 110 0.14
956 4 0.00
957 2 0.00
959 1 0.00
963 1 0.00
964 2 0.00
973 70 0.09
974 114 0.14
975 100 0.12
976 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (959 bp):
CTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGAAGTACATTCCCAGTCTAACATCGAAC
CGAACCAAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGA
CCAGGCACCATCGCCGGAGCATCGCCAGAGAACCTGCCTGGCGACATTGGGCTTCCGATGATCGG
GGGGGCCGACGGGGTAGTGCGCACATAATGTGCAATGGGTGCCGATCTTGGCCCTTATATCGGCC
CCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAAAAAATCTTG
TACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATACCAAAAAAAACACAAGGATCACGTCTAC
CAAATTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTACGA
AAATCATGAAAAATAGAAAACGAGTCGGCTTGCCATGAAACTTCACTGAGGAAAGGGACTTATGA
GCCATAAAAATGGAATTAGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
CATCCACGGCTTACGCATCCCATCTCTCTGGCCAGCGTAGTGCCCGCCCGCCAGACCGCCCGCTC
ATTTCGTCGGTTGGCTTAGGCATACGGAGTTCACTCACAGTATAAGATCGGACTGGACCGAGGGA
TGCGACAGCAGGATCGGCAGCACGCAAAGGGGGACCCGACCAATCCCAGCTTGCGCATCCCGCCC
TCTGGCCAGCTGAGCACCCGCACACTCGTTTTGTGGGTTGACTTACGCATACGGAGTTCATTCGC
AGTCTAAGATCAGACTGGACCGAGGGTTGCAGACACTTTTTTCAAGTGG
Found at i:15981561 original size:26 final size:26
Alignment explanation
Indices: 15981525--15981577 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15981515 GTTGACTTAG
15981525 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
15981551 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
15981577 G
1 G
15981578 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAA
Found at i:15984182 original size:26 final size:26
Alignment explanation
Indices: 15984146--15984201 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
15984136 TGGGTTGACT
*
15984146 TAAGCGTACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
15984172 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
15984198 TAAG
1 TAAG
15984202 ATCGGATCGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:15985073 original size:26 final size:26
Alignment explanation
Indices: 15985034--15985086 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15985024 GTTGACTTAG
*
15985034 GCATACGGAATTCATTCTCAATCTAA
1 GCATACGGAATTCATTCCCAATCTAA
* *
15985060 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAATCTAA
15985086 G
1 G
15985087 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAATCTAA
Found at i:15985970 original size:26 final size:26
Alignment explanation
Indices: 15985934--15985989 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
15985924 TGGGTTGACT
*
15985934 TAAGCGTACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
15985960 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
15985986 TAAG
1 TAAG
15985990 ATCGGATCGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:15986339 original size:891 final size:893
Alignment explanation
Indices: 15983877--15994822 Score: 7559
Period size: 891 Copynumber: 12.2 Consensus size: 893
15983867 CAATATGAAG
* * * *
15983877 ATGTGCCTAAACCCACCTACCACCCTATCGTTCCACGGCTTGCGCATCCCGCCTTTCTGGCTGAC
1 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
* *
15983942 GTAGTGCCCACCCGTCCGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTC
66 GTAGTGCCCACCCGTCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * *
15984007 CCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGGGACC
131 CCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACATAGAGGGGGACC
* * * * * * * *
15984072 CAACCAATCCCCGGCTTGTGCATCCCGCCCCTCTAGCCGGTTGAGCGCGCGCACGCTCATTTCTT
196 CGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCAT
* *
15984137 GGGTTGACTTAAGCGTACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
261 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
* * ** * * * *
15984202 ATCGGATCGGATCGAGGGTTATGGCAGCACGTGCTAGGCTCGGGCGTGTGCTGGTGCCACATTTT
326 ATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT
* * *
15984267 TCTTCATCGGGGCACCATC-GCT-GGAGAACCTGACCGGCAGCATTAGGGTTCCGACGATCGGGG
391 TCTTCGTCGGGGCACCATCAGCTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGG
* * *
15984330 GGGCCGGGGGGTGTGCGTACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGACCCC
456 GGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* * *
15984395 TATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAGGAGCATTTGAGATTTTACAGGTTTGT
521 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
15984460 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
586 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* **
15984525 ACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAAAAA
651 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
** * * * * *
15984590 GTTCAGCGTCAAAACTCCTTTCGAAAAATTTTTAAAAAATCTCGAACAGT-AAAAGTTTCAAAAA
716 GTTTGGGGCCAAAACTCC-TTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
* *
15984654 TCGTGAAAAATAGAAAAGGAGTCGTCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTG
780 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
*** * **
15984719 TATGAATTTACAAGCCATAAAAATGGCATTGGCACATAAAAATACAAAG
845 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* * * * * *
15984768 ATGTGCCTAAACCCACTTGCCACCCTATCGATCCACGGCTTGCGCATCTCGTCCCTCTGGCTG-G
1 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
* ** * *
15984832 GTAGTG-CCA---GCCCGCTTGCCTGCTTGTTTCGTCGGTTGGCTTAGGCATAC-GAGTTCATTC
66 GTAGTGCCCACCCGTCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
** ** * * * * ** * *
15984892 CCAGTCTAAGATTGGACTAGACCGAGGGTTGTGGCAGCAGGATAGGCAGCACGCAAAAGGGGACC
131 CCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACATAGAGGGGGACC
* * * ** * *
15984957 CGGCCGATCCCCGACTTGCACATCCCGCCCCTCTGGTTGGCTGAGCGCCCGCACGCGCGTTTCTT
196 CGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCAT
* * *
15985022 GGGTTGACTTAGGCATACGGAATTCATTCTCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAG
261 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
* * **
15985087 ATCAGATCAGACCGAGGGTTTCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGATGCATTTT
326 ATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT
* * * * *
15985152 TCTTCGCCGAGGCACAATCGCTGGAGCATCGCCGGAGAACTTGACCGGCGGCATTGGGGTTCCAA
391 TCTTCGTCGGGGCACCAT--C---AGC-T---CGGAGAACCTGACCGGCGGCATTGGGGTTCCGA
**
15985217 CGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTATTGGTACTTGGCCCTTAT
447 CGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* *
15985282 ATTGGCCGCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGATATTTT
511 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* *
15985347 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGGCACTTTTTTCGAATGGTCACAA
576 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
15985412 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
641 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
* * * * *
15985477 CGTCTACGATGTTTGGGGCCAAAACTCCTTCCAAAACATTTTAAAAAATCTCGAACCGTAAAAAG
706 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG
* * *
15985542 TTTTAAAAATCGTGAAAAATAGAAAATGAGCCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
771 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * *
15985607 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGACACGCAGCAATATGAAG
836 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* * * *
15985665 ATGTGCCTAAACCCACCTACCACCCTATCGTTCCACAGCTTGCGCATCCCGCCTTTCTGGCCGAC
1 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
* *
15985730 GTAGTGCCCACCCGTCCGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTC
66 GTAGTGCCCACCCGTCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * *
15985795 CCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGTAGGATCGACAGCACATAGAGGGGGACC
131 CCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACATAGAGGGGGACC
* * * * * * * *
15985860 CAACCAATCCCCGGCTTGTGCATCCCGCCCCTCTAGCCGGTTGAGCGCGCGCACGCTCATTTCTT
196 CGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCAT
* *
15985925 GGGTTGACTTAAGCGTACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
261 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
* * ** * * * *
15985990 ATCGGATCGGATCGAGGGTTATGGCAGCACGTGCTAGGCTCGGGCGTGTGCTGGTGCCACATTTT
326 ATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT
* *
15986055 TCTTCATCGGGGCACCATC-GCT-GGAGAACCTGACCGGCGGCATTAGGGTTCCGACGATCGGGG
391 TCTTCGTCGGGGCACCATCAGCTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGG
* * *
15986118 GGGCCGGGGGGTGTGCGTACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGACCCC
456 GGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* * *
15986183 TATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAGGAGCATTTGAGATTTTACAGGTTTGT
521 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
*
15986248 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATAC
586 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * *
15986313 ACTTCCAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGCCTACCAA
651 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* * * *
15986378 GTTTAGGGCCAAAAATCTTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
716 GTTTGGGGCCAAAACTCCTT-CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
* * * * *
15986443 TCATGAAAAATAGAAAATGAGTCGTCTTGCCATG-AACTTCACGTCAAGGCTTGAGGGACCATTA
780 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * *
15986507 TATGAATTTACAAGCCATAAAAATGGCAATGGGATGCAAAAATATGAAG
845 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* *
15986556 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGGC
1 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
* * * ** *
15986621 GTAGTGCCCGCCCGCCCGTCCGCTAGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTC
66 GTAGTGCCCACCCGTCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* ** * * ** ** *
15986686 CCAGTCCAAGATTGGATCGG-GTCGAGGGTTATGGTAGCAGGATCAACAGCACGTAGAGGGGGAC
131 CCAGTCTAAGATCAGACCGGACT-GAGGGTTGCGGTAGCAGGATCGGCAGCACATAGAGGGGGAC
* * *
15986750 CCGACCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGCCCCCGCCCGCTCGTTTCA
195 CCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCA
** * * * *
15986815 TCAGTTGACTTAGGCGTACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTGTAA
260 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * *
15986880 GATCGGACCGGACCAAGGGTTGCGGCAACACATGTTGGGCTCAGGCATGTGTTGGTGCTGCATTT
325 GATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA-TT
** *
15986945 TTTCTTCACCGGGGCACCATCGGCAAAGCATCACCGGAGAACCTGACCGGCGACATTGGGGTTCC
389 TTTCTTCGTCGGGGCACCAT---C--AGC-T---CGGAGAACCTGACCGGCGGCATTGGGGTTCC
* * * ** *** ** * * *
15987010 AACGATTGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGCCCGCCCGCCCGTTCGTT--TCG
445 GACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCG-ATGGGTGCTGGTAC-TTGGCCC
* * ** * ** * * * ** * **
15987073 TCA-ATTGG---CTTAGGCATACGGAGTTCATTCC-CAGTGTAAGATCAGACCGGACTGAGGGTT
507 TTATATTGGCCCCCTATCCCT-C--A--TCAAACCTC-GAG-AA-CTCACACC-CCCTTA---AA
* * * ** * *** * ** *** * *
15987133 GCAGCAGTAG-GA--TCAGCA-GCATGCAGAGGGGTACCCGA-TCGA-T-TCCTGGCTTGCGTAT
560 G-AGCATTTGAGATTTTA-CAGGTTTGCTG-CCAGTAGCC-ATTAAAGTGT-CTGAAATGGGGA-
* ***** * * * * * ** * * * * *
15987191 CTCGCCCCTC---TGGCCGGCTGAGAGCCCGCACGCTCATTTCGTGGGTTAACTTAGGCATACGG
619 CACTTTTTTCAAATGGTC-AC-AAAATCTTGTA----CACTTC--GAGTT--TTTA-GC-T--GA
* ** ** * * * * ** * * *
15987253 AGTTCATT-CCCA-GTCCAAGATCAGATCGGATCAAGGGTTGCG-ATAGCACA-TGCT-GGGCTC
670 ATTTTTTTGTGCATG-CCAACA-AAAAT---A-CAAGGATCACGTCTACCA-AGT-TTGGGGC-C
** ** * ** * ****** ** * ** * **
15987313 GGGCATGTGCTGGT-G-GCACATTTTTCTTCGTCGGGGCACC----ATCG--TCGGAGCATCGCC
726 --AAAACTCCT--TCGAAAAAATTTTAAAAAATC-CCGAACCGTAAAAAGTTTC-AAAAATCG--
* * ** * * ** ** * ***** * * ** **
15987370 GGAGAACCAGACTAGCGGCATTGGGGTTCCGGCGATCGGGGGGGTCAGGGGGTGTGCGCACATGA
783 TGAAAAATAGA-AAAC-G-A--GTCG-TCTTGCCAT--GAAACTTCACGTGAAG-GCTTA-A-G-
* ** * * * * * * *** *
15987435 TGTG-CGA-TGGGTG-CTTGTACTTAGCCCTTATATTGGACCCCTATCCCTCAT-CA-AACCT-T
836 -G-GACCATTGTATGAATT-TAC-AAGCCATAAAAATGG----C-AT-TGGCATGCAGAA-ATAT
15987494 G-AG
890 GAAG
** * * ** * * * * ** * * ** *
15987497 AACT--C-ACACCC-CTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAAT-TAA
1 ATGTGCCTAAACCCAC-CT-ACCACCCTAT-CGA-TCCAC-GGCTTGC-G-CA-T-CCCGTCT-C
** * * ** * ** *** * ** * **** * *
15987557 AGTGTCTGAAAT-GGGGACACTTTTTTCAAATGGTCACAAAATC-TTGTACACTTCGAGTT--TT
56 TCTGGCCGACGTAGTGCCCAC--CCGTC---CGCCCGCCCGCTCGTT-T---CGTCG-GTTGGCT
* **** * ** * **** * * * * * *
15987618 TAGCTGAATATTTTTGTGCATGGCAACAAAAATATGAGGATCAC-GTCTACCACGTTTG-GG--G
111 TAG--GCATA-CGGAGTTCATTCCCAGTCTAAGATCA-GA-C-CGGACT--GAGGGTTGCGGTAG
** ** ** * ** **** * **** * *
15987679 CCAAAACTACTTCCAAAAAAATTTTA-AAAAATCTCGAACCGCAAAAATTTTTGAAAATCATGAA
168 -CAGGA-T-C-GGC-AGCACA-TAGAGGGGGA-CCCG-ACCG-----ATCCCCG----GCTTG--
* * * ** * * * ** * * *** * *
15987743 AAATAGAAAACAAG-TCGTCTTGCCATGAAATTTCACGTGAAGGCTTAAGGGAC-CATTGT-ATG
214 ----CG-CATCCCGCCCCTCTGGCC--G---GCTGA-GCGCCCGC---A-CG-CTCGTT-TCATG
** * * * ** * * ** ** * * * ** * *
15987805 AATTTAC-AAGCCATA-AAAATGGCATTGGCACGTAGAA--ATATGAAGATGTGCCTAAACCTGC
262 GGTTGACTTAGGCATACGGAGT-TCATTCCCA-GTCTAAGCATACG--GA-GTTCAT-TCCCAGT
* ** * * * * * ** * *
15987866 CTACCG-TCCTATC-GATCC-ACAGCTTGC-GCATCCCGT-CT-CTCTAGCCGACATAGTGCCTG
321 CTA-AGATCGGATCAGA-CCGA-GGGTTGCGGCAGCACATGCTGGGCT--CGGGCAT-GTG-CTG
* * * * * ** * * * *
15987925 CCCGCCTGCGCGC-TCGTTTTGTTTGT--TGG---CTTAAGCATACGGAGTTCAT--TC-TCAG-
379 ---G--TGC-CGCAT--TTTTCTTCGTCGGGGCACCATCAGC-T-CGGAGAACCTGACCGGCGGC
** * * * ** * * * *
15987980 -TCT-AAGATCAGACCAGACCGAGGGTTG-CGGTAGTAGGATCGTAGCACGCA-GATGGGGACCC
434 AT-TGGGGTTCCGA-C-GATCG-GGGGGGCCGG--G--GGGT-GT-GCGCACATGAT-GTG---C
** * * * ** * ** * * **
15988041 GACCGATCCCTGG--CTT-GCGC--ATCCT-GCCCCTCTAGCCAGC-TGAACGCCT-GTACGCTC
485 GATGGGT-GCTGGTACTTGGCCCTTATATTGGCCCC-CTATCCCTCATCAA-ACCTCG-A-GAAC
*** **** * * ** * * ** * ** ** * *
15988098 GTTTTATGGGCTGACTTAG-GCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTACCCCT
545 -TCACACCCCCTTA--AAGAGC-ATTTGAGATTTTAC-AGG---TT-TGCT-G-CCAGTAGCCAT
*** * * * **** ** ** * * * ***
15988162 TATCAAACCTCAAGAACT---CACACCCCCTT-AAACAG-CATTTGAGATTTTATAGGTTTGCTG
599 TA--AAGTGTC-TGAAATGGGGACACTTTTTTCAAATGGTCA--CAAAATCTTGTACACTT-C-G
** * **
15988222 CCAGTAGCCATTAAAGTGTCTGAAATGTGGACACTTTTT-T-CAAATGGTC-AC-AAAAT-CTTG
657 --AGT-----TTTTA--G-CTG-AAT-T------TTTTTGTGC--AT-GCCAACAAAAATACAAG
* ** *** * *** ** * *** * *
15988282 TA-CAC-T-T--TGAGTTTTTAGCTGAATTTTTTTGTGGATGCCAAAAAAAATAAAAGGATCACG
701 GATCACGTCTACCAAGTTTGGGGC-CAAAACTCCT-TCGA----AAAAATTTTAAAA-AATCCCG
* **
15988342 --TC-TACCAAGTTTGGAACCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAGAA
759 AACCGTAAAAAGTTT-----CAAAAA----T-CG------------------T------------
*
15988404 AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTA
784 -G----AAAAA----------TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
*
15988469 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCACAAATATGAAG
834 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* * * *
15988529 ATGTGACTAAACCCACCTACCACCCTATCGATCCATGACTTGCGCATCCCGTCTTTCTGGCC-AG
1 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA-
*
15988593 CGTAGTG------C--CCGCCCGCCCGCTCGTTTCTTCGGTTGGCTTAGGCAT-CTGGAGTTCAA
65 CGTAGTGCCCACCCGTCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC-GGAGTTC-A
* ** * *
15988649 TCCCCA-TCTAAGATTGGACCGGACGGAGGGTTGCGGTAGCAGGATCGGCAGCACGTAGAGGGGG
128 TTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACATAGAGGGGG
* ** * *
15988713 ACCCGATCGATCCCCGGCTCACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCTGTACGCTCGTTT
193 ACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
* *
15988778 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-TGGA---C--T----G---
258 CATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* *
15988829 --GA-C----C--A---AGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCAT
323 AAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
* * *
15988882 TTTTCTTCGTCGGGGCACCATCGTCAGAGCATCACCAGAGATCCTGACCGACGGCATTGGGGTTC
388 TTTTCTTCGTCGGGGCACCA---TC--AGC-T---CGGAGAACCTGACCGGCGGCATTGGGGTTC
* * * *
15988947 CGGCGATCGGGGGGACCGGGGGGTGTGCGTACATGATGTGCAATGGGTGCTGGTACTTGGCCCTT
444 CGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* * *
15989012 ATATTGTCCCCCTATCCCTCATCAAACCTCGAGAGCTCACACCCCCTTAAAGAGCATTTTAGATT
509 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* * * *
15989077 TTACAGGTTTGCTGTCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGACAC
574 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* **
15989142 AAAATCTTGTACACTTCGAGTTTCTT-GCTGAATGTTTTTGTGCACACCAACAAAAATACAAGGA
639 AAAATCTTGTACACTTCGAGTTT-TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
*
15989206 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTACG-AAAAATTTT-AAAAATCCTGAACC--AA
703 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAAAATTTTAAAAAATCCCGAACCGTAA
* * * *
15989267 AAATGTATTCAAAAATCATTGAAAAAT-GGAAACAAGTCCTGCTTGCCATGAAACTTCACGTGAA
767 AAA-GT-TTCAAAAATC-GTGAAAAATAGAAAACGAGTCGT-CTTGCCATGAAACTTCACGTGAA
* * ***
15989331 GGCTTAA-GG-CCATTGTATGAATTTCGCAAGCCAT-AAAATGGCATGGGCACATAGAAATATTG
828 GGCTTAAGGGACCATTGTATGAATTT-ACAAGCCATAAAAATGGCATTGGCATGCAGAAATA-TG
*
15989393 AAA
891 AAG
* ** * *
15989396 ATGTGGCC-AAACCAACCTACCACTTTATCGGATTTCACGGCTTGGCGCATCCTGTCTCTCTGGC
1 ATGT-GCCTAAACCCACCTACCACCCTATC-GA-TCCACGGCTT-GCGCATCCCGTCTCTCTGGC
** * ** * *
15989460 CG--GTTCTG--TA---GT--GCCCGCCCGCT--TTTTTTCGG-TGTCTT-GACATACGGAGTTC
62 CGACGTAGTGCCCACCCGTCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * * ** * * *
15989512 GGTACCCAGTCTAAGATC-GA-CGGA-TCAAGCGGTTGCGACAGTGAGGATCTAGCAGCACGTAG
127 -ATTCCCAGTCTAAGATCAGACCGGACT-GAG-GGTTGCGGTAG-CAGGATC-GGCAGCACATAG
* * * * * *
15989574 AGGGGGACTCGATCGGATCCGCTGGCTTGCGC-TCCTGCCCCTTTGGTCGGCTGAGCGCCCGCTA
187 AGGGGGACCCGA-CCGATCC-CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC-A
* * * * **
15989638 --CTCGTGTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGAAGTTTGT
249 CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * * * *
15989701 TTCTAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAACACATGCTGGGCTCGAGCATATGCTG
314 TCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* ** * *
15989766 CTGCCATATTTTTCTTCGTTGGGGCACCATC-G-TCGGAGAACCTTACCGGCGGCATTGGGGTTC
379 GTGCCGCATTTTTCTTCGTCGGGGCACCATCAGCTCGGAGAACCTGACCGGCGGCATTGGGGTTC
* ** *
15989829 CGACAATCGAAGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGCGTGCTGGTACTTGGCCCT
444 CGACGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* *
15989894 TATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCATAAAGAGCATTTGAGAT
508 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
15989959 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
573 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* * * *
15990024 CAAAATCTTGTACACTTTGAGTTTTTAACTAAATTTTTTTATGCATGCCAAC-AAAATACAAGGA
638 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* * *
15990088 TCACGTCTACCAAGTTTGGGACCAAAACTCCTTTCGAAAAAACTTTAAAAAATCTCGAACCGTAA
703 TCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCGAAAAAATTTTAAAAAATCCCGAACCGTAA
* * * *
15990153 AAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCATCTTGCCATGGAACTTCACGTGAATGCT
767 AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
* * * * * *
15990218 TAAAGGACCATTTTATGAATTTACAAGCCACAAAAAAGGCATTGGCACGTAGAAATATGAAG
832 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* * * * * *
15990280 ATGTGCCTAAACCCACCTACGACCCTATCAATCCATGGCTTACGCATCCCGTCTCTCTGGTCGAT
1 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
* * * * * *
15990345 GTAGTGCCCGCCCG-CTCGCCTGCCCGCTCATTTCATCGGTTGGCTTACGCATACGGAATTCATT
66 GTAGTGCCCACCCGTC-CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * *
15990409 CCCAGTCTAAGATCAGACCGGA-TAGAGGGTTGCGGTAGCAGGATCGGTAGCATGCAT--TGGAG
130 CCCAGTCTAAGATCAGACCGGACT-GAGGGTTGCGGTAGCAGGATCGGCAGCA--CATAGAGGGG
* * * *
15990471 GTCCCGACCGATCCCCGGGTTGTGCATCACGCCCCTCTGGCCGGCTGAGCGCCCGTC-CGCTCGT
192 GACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG-CACGCTCGT
*
15990535 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A-T--C-G-
256 TTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* ** *
15990588 ----GA-C----C--A---AGGGTTGTGATAGCACATGCTGGGCTCGGGCATCTGCTGGTGCCGC
321 CTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
* *
15990639 ATTTTTCTTCGTCGGGGCACCATCATTGGAGCATCGCCAGAGAACCTGACTGGCGACATTGGGGT
386 ATTTTTCTTCGTCGGGGCACCATC-----AGC-TCG---GAGAACCTGACCGGCGGCATTGGGGT
* * * *
15990704 TCCGACGAT--------CAGAGGGGTGTGCACACATGATGTGCGATGGGTGGTGGTACTTGGCCC
442 TCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
*
15990761 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCTCTTAAAGAGCATTTGAGA
507 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* * *
15990826 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTCTCTGAAATGGGGAAACTTTTTTGAAATGGTC
572 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* *
15990891 ACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTTTTTTGCATGCCAACAAAAATACAAG
637 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATACAAG
* * * * * **
15990956 GATCACGTCTACCAAGTTTGGGCCCAAAAATCCTTTCGAAAAAATTTTAACAAACCCCGAGCCAC
701 GATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCGAAAAAATTTTAAAAAATCCCGAACCGT
* * *
15991021 AAAAAGTTTCAAAAATCGTGAAAAATAGAGAACAAGTCGTCTTGCCTTGAAACTTCACGTGAAGG
765 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
*
15991086 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCACTGGCATGCAGAAATATGAAG
830 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* * * * *
15991150 ATATGCCTAAACCCACCTACCACCCTATCAATCCATGGCTTGCGCATCCCGTCTCTCCGGCCGGC
1 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
* * * * *
15991215 ATAGTACCCGCCCG-CCTGCCTGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
66 GTAGTGCCCACCCGTCC-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * * *
15991279 CCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGATAGCAGGATCGGCAGCTCATAGAGGGGGAC
130 CCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACATAGAGGGGGAC
** * * * *
15991344 CCGACCGATCCTGGGCTTGCGCATCCCACCCCTCTGGCTGGCTGAGCACCCGCACGCTCGTTTCG
195 CCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCA
* * *
15991409 TTGATTGACTTAGGCATACGGAGTTCATTCCCAGTCTATG-AT-C--AG---A----CAG-----
260 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
15991458 GA-C----C--A-C-A-GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
325 GATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
* *
15991513 TTCTTCGTCGGGGCACCATCGCCAGAGCATCGCCGGAGAACCTGACCGACTGCATTGGGGTTCCG
390 TTCTTCGTCGGGGCACCAT---C--AGC-T---CGGAGAACCTGACCGGCGGCATTGGGGTTCCG
* *
15991578 ACGATC-GGGGGG-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTTCTTGGTCCTTAT
446 ACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* *
15991641 ATTGGCCCCCTATCCCTCGTCAAACCTCGAGAACTCACACCCCCTGAAAGAGCATTTGAGATTTT
511 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* * *
15991706 ACAGGTTTGCTGCCAGTTGCCGTTAAAGTGTCTGAAATGGGGACACTTTTTTCAATTGGTCACAA
576 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
*
15991771 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCA
641 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
* * ** *
15991836 TGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGCACCCCAAAAG
706 CGTCTACCAAGTTTGGGGCCAAAACTCC-TTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAA
* * *
15991901 GTTTCAAAAATCATGAAAAATAGAAAACGTGTCGTCTTGCCATGAAACTTCAAGTGAAGGCTTAA
770 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
*
15991966 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCGTTGGCATGCAGAAATATGAAG
835 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* * *
15992025 ATGTGCCTAAACCCACCGACCACCCTATCGATCCACGGCTTGTGCATCTCGTCTCTCTGGCC-AG
1 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA-
* * * * **
15992089 CGTAGTGCCCGCCCGTCTGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCAGA
65 CGTAGTGCCCACCCGTCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * * * *
15992154 CCCAGTCTAAGATTAGACCGGA-TGAAGGGTTACAGTAGCAGGATCGGCAGTACACAGAGGGGGA
130 CCCAGTCTAAGATCAGACCGGACTG-AGGGTTGCGGTAGCAGGATCGGCAGCACATAGAGGGGGA
** * * *
15992218 CCCGACCGATCCTTGACTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTC
194 CCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
** * *
15992283 ATGGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAACCATACGAAGTTCATTCCCCA-TCT
259 ATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT-CCCAGTCT
* * * *
15992347 AAGTTCGGA-CTAGACCGAGGGTTGCGGCTGCACATGCTGGGCTCGAGG-AAGTGCTGGTGCCGT
323 AAGATCGGATC-AGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG-GGCATGTGCTGGTGCCGC
* * *
15992410 ATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATTGCCGGAGAACCTGACCGGCCGCATTGGGCT
386 ATTTTTCTTCGTCGGGGCACCA---TC--AGC--T--CGGAGAACCTGACCGGCGGCATTGGGGT
* * ** ** **
15992475 TTCGACGAT-----TGG--GGGGAATGTGCATACATGATGTATGATGGGTGCTGGTACTTGGCCC
442 TCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* *
15992533 TTATATTGGCCCCCTATCCCTAATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGA
507 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* * *
15992598 TTTTACAGGTTTGCTGCCAGTAGTCGTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATC
572 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
*
15992663 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGG
637 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
* *
15992728 ATCACGTCTACTAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAATCGTA
702 ATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCGAAAAAATTTTAAAAAATCCCGAACCGTA
* * * *
15992793 AAAAGTTTCGAAAATCATGAAACATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTCAAGGC
766 AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* * ** *
15992858 TTAAGAGACCATTGTATGAATTTACAATCCATAAAAATGGTGTTGGCATGTAGAAATATGAAG
831 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* * * *
15992921 ATGTGCCTAAACCTACCTACCACCCTATTGATCCACGGCATGTGCATCCCGTCTCTCTGGCCGAC
1 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
* * *
15992986 GTAGTGCCCA--C--CCGCCCGTCCGCTCGTTTCATCGGTTGGCTAAGGCATACGGAGTTCATTC
66 GTAGTGCCCACCCGTCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * * ** * ** * *
15993047 CCAGTCTAAGATCGGATCAGACCGAGGGTTACATTAGCAGGATTGGCAAAACACAGAGTGGGACC
131 CCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACATAGAGGGGGACC
* * * *
15993112 TGGCCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG-TCGAGTGCCCGCACGCTCGTTTCA
196 CGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT-GAGCGCCCGCACGCTCGTTTCA
*
15993176 TGGGTTGAC-T-----TA--G-G--------CA---T--G----CGGAGTTCAATCCCAGTCTAA
260 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * * **
15993215 GATCGGATCAGACCGAGGGTT-CTGGTAGTAGATGCTGGGCTCGGGCATGTGCTGGTGCCAAATT
325 GATCGGATCAGACCGAGGGTTGC-GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
* ** * * *
15993279 TTACTTCG-CAAAGGCACCATCATCGAAGCATCACCGGAGAACCTGATCGGCGGC-TTTGGGTTT
389 TTTCTTCGTC-GGGGCA-C--CATC--AGC-T---CGGAGAACCTGACCGGCGGCATTGGGGTTC
* *
15993342 CTAGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATAGGTGCTGGTACTTGGCCCT
444 CGA-CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* *
15993407 TATATTTGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAGCCCCTTAAAGAGCATTTGAGAT
508 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* * *
15993472 TTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAGACCTTTTTCAAATGGTCA
573 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* * *
15993537 CAAAATCTTGCACACTTCGAGTTTTTACCTGAA-TTTTTTGTGCATGCCAAAAAAAATACAAGGA
638 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* * * *
15993601 TCATGTCTACCAAGTTTGGGGCCAAAACTCATCGCGAAATAATTTTAAAAAATCCCGAACCGTAA
703 TCACGTCTACCAAGTTTGGGGCCAAAACTCCT-TCGAAAAAATTTTAAAAAATCCCGAACCGTAA
*
15993666 AAAGTTTCAAAAATCGTGAAAAATAGAAGACGAGTCGTCTTGCCATGAAAC-TCACGTGAAGGCT
767 AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
* * *
15993730 TATGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATAAAG
832 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* * *
15993792 ATGTGACTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGAT
1 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
* * * * * *
15993857 GTAGAGCCCGCCCGCCCACCAGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTC
66 GTAGTGCCCACCCGTCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
** * ** * * * * * ** *
15993922 ATAGTCTAAGATC-GAACCGAACCAAGGGTTGCAGCAGCAAGATTGGTAGCACGCAGAGGAGGAC
131 CCAGTCTAAGATCAG-ACCGGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACATAGAGGGGGAC
* * * * * * * * *
15993986 CCGGCTGATCCCCAGCTTGCGCATCTCGCCACTCTGGCCTGCTGAGCGCCCGCACGGTAGTTTCG
195 CCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCA
* *
15994051 TGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAC
260 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * * ** *
15994116 GATCGGATCAGACCGAGGGTTACGGGAGCACATGCTAGGCTCGGGCATGTGCTGGTTTCGAATTT
325 GATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
*** * *
15994181 TTCTTTACCGGGTCACCATC-G-TCGGAGAACCTGACCGGAGGCATTGGGGTTCCGGA-GATCGG
390 TTCTTCGTCGGGGCACCATCAGCTCGGAGAACCTGACCGGCGGCATTGGGGTTCC-GACGATCGG
** *
15994243 GGGTACCGGGGGGTGTGCGCACATGATGTGCGATGGGAGCTGGTACTTGGCCCTTATATTGGCCC
454 GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
*
15994308 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTT
519 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* *
15994373 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGGCACTTTTTTCAAATGGTCACAATATCTTGT
584 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * * * *
15994438 ACACTTCGAGTTTTTAGTTGAACTTTCTTGTGCATGCCAGCAAAAATACAAGGATCATGTCTACC
649 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * * **
15994503 AAGTTTGGGGCCAAAACTGCTTCTGAAAAATTTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAA
714 AAGTTTGGGGCCAAAACTCCTTC-GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAA
* * *
15994568 AATCTTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAGTTCACGTGAAGACTTAAGGGACCAT
778 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
15994633 TGTATGAATTTACAAGCCAT-AAAATGGCATTGGCATGCAGAAATATGAAG
843 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* * * * * *
15994683 ATGTACCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCACATCCCGTCTCTCTAGTCGGC
1 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
* * * * *
15994748 GTAGTGCCCGCTCGTCCGTCCGCCCACTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
66 GTAGTGCCCACCCGTCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
15994813 CCAGTCTAAG
131 CCAGTCTAAG
15994823 CATACGGAGT
Statistics
Matches: 7865, Mismatches: 1562, Indels: 1256
0.74 0.15 0.12
Matches are distributed among these distances:
864 6 0.00
865 45 0.01
866 219 0.03
867 125 0.02
868 269 0.03
869 55 0.01
870 567 0.07
871 137 0.02
872 135 0.02
873 195 0.02
874 6 0.00
875 613 0.08
876 202 0.03
877 32 0.00
878 6 0.00
879 2 0.00
881 22 0.00
882 95 0.01
883 264 0.03
884 68 0.01
885 284 0.04
886 41 0.01
887 4 0.00
888 3 0.00
889 3 0.00
890 256 0.03
891 1032 0.13
892 408 0.05
893 87 0.01
894 25 0.00
895 12 0.00
896 537 0.07
897 430 0.05
898 13 0.00
899 5 0.00
900 7 0.00
901 183 0.02
902 39 0.00
903 291 0.04
904 27 0.00
905 12 0.00
906 4 0.00
907 10 0.00
908 5 0.00
909 18 0.00
910 13 0.00
911 4 0.00
912 7 0.00
913 6 0.00
915 3 0.00
917 9 0.00
918 2 0.00
919 7 0.00
920 21 0.00
921 26 0.00
922 10 0.00
923 5 0.00
924 18 0.00
925 14 0.00
926 14 0.00
927 18 0.00
928 3 0.00
929 4 0.00
930 6 0.00
931 2 0.00
932 1 0.00
933 5 0.00
934 2 0.00
935 1 0.00
936 6 0.00
937 11 0.00
938 24 0.00
939 8 0.00
940 24 0.00
941 21 0.00
942 18 0.00
943 11 0.00
944 4 0.00
945 7 0.00
946 14 0.00
947 14 0.00
948 8 0.00
949 19 0.00
950 26 0.00
951 25 0.00
952 17 0.00
953 12 0.00
954 9 0.00
955 15 0.00
956 12 0.00
957 6 0.00
958 12 0.00
959 6 0.00
960 1 0.00
961 3 0.00
962 5 0.00
963 4 0.00
964 1 0.00
968 3 0.00
971 1 0.00
972 3 0.00
975 2 0.00
976 2 0.00
977 16 0.00
978 22 0.00
979 5 0.00
980 6 0.00
981 9 0.00
982 9 0.00
983 11 0.00
984 12 0.00
985 16 0.00
986 18 0.00
987 38 0.00
988 28 0.00
989 26 0.00
990 34 0.00
991 17 0.00
992 11 0.00
993 10 0.00
994 10 0.00
995 8 0.00
996 4 0.00
997 11 0.00
999 4 0.00
1000 5 0.00
1001 3 0.00
1002 4 0.00
1003 6 0.00
1004 4 0.00
1005 3 0.00
1006 6 0.00
1007 4 0.00
1008 6 0.00
1009 3 0.00
1010 7 0.00
1011 10 0.00
1012 5 0.00
1013 4 0.00
1015 6 0.00
1016 2 0.00
1018 1 0.00
1021 1 0.00
1024 116 0.01
1025 181 0.02
1026 134 0.02
1027 343 0.04
1028 121 0.02
1029 122 0.02
1030 119 0.02
1031 139 0.02
1032 166 0.02
1033 123 0.02
1034 75 0.01
1035 90 0.01
1036 65 0.01
1037 54 0.01
1038 76 0.01
1039 93 0.01
1040 93 0.01
1041 55 0.01
1042 88 0.01
1043 103 0.01
1044 84 0.01
1045 117 0.01
1046 79 0.01
1047 73 0.01
1048 68 0.01
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (893 bp):
ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
GTAGTGCCCACCCGTCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
CCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACATAGAGGGGGACC
CGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCAT
GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
ATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT
TCTTCGTCGGGGCACCATCAGCTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGG
GGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
GTTTGGGGCCAAAACTCCTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
Found at i:15986861 original size:26 final size:26
Alignment explanation
Indices: 15986831--15986880 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
15986821 GACTTAGGCG
15986831 TACAGAGTTCATTCCCAGTCTAAGCA
1 TACAGAGTTCATTCCCAGTCTAAGCA
*
15986857 TACAGAGTTCATTCCCAGTGTAAG
1 TACAGAGTTCATTCCCAGTCTAAG
15986881 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (26 bp):
TACAGAGTTCATTCCCAGTCTAAGCA
Found at i:15992131 original size:875 final size:873
Alignment explanation
Indices: 15988120--15994822 Score: 7872
Period size: 875 Copynumber: 7.6 Consensus size: 873
15988110 GACTTAGGCA
* * * *
15988120 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTACCCCTTATCAAACCTCAAGAACTCACAC
1 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
15988185 CCCCTTAAACAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGT
66 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
15988250 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTG
131 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * ** * *
15988315 GATGCCAAAAAAAATAAAAGGATCACGTCTACCAAGTTTGGAACCAAAAATCCTTCCGAAAAAAT
196 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAT
* * * *
15988380 TTTAAAAAATCTCGAACCGCAGAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGC
261 TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
15988445 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
326 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * *
15988510 GGCATGCACAAATATGAAGATGTGACTAAACCCACCTACCACCCTATCGATCCATGACTTGCGCA
391 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* *
15988575 TCCCGTCTTTCTGGCCAGCGTAGT----G-CC-C-GCCCGCCCGCTCGTTTCTTCGGTTGGCTTA
456 TCCCGTCTCTCTGGCC-GCGTAGTGCCCGCCCGCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* ** * *
15988633 GGCAT-CTGGAGTTCAATCCCCA-TCTAAGATTGGACCGGACGGAGGGTTGCGGTAGCAGGATCG
520 GGCATAC-GGAGTTC-ATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGATAGCAGGATCG
* * **
15988696 GCAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTCACGCATCCCGCCCCTCTGGCCGGCTGAG
583 GCAGCACATAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * **
15988761 CGCCTGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGA
648 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTATGATCAGA
* * *
15988826 CTGGACCA-AGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTC
713 CAGGACCACAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
* * * * *
15988890 GTCGGGGCACCATCGTCAGAGCATCACCAGAGATCCTGACCGACGGCATTGGGGTTCCGGCGATC
778 GTCGGGGCACCATCGTC-GAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC
* *
15988955 GGGGGGACCGGGGGGTGTGCGTACATGATGTGCA
842 GGGGGG--CGGGGGGTGTGCGCACATGATGTGCG
* *
15988989 ATGGGTGCTGGTACTTGGCCCTTATATTGTCCCCCTATCCCTCATCAAACCTCGAGAGCTCACAC
1 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
15989054 CCCCTTAAAGAGCATTTTAGATTTTACAGGTTTGCTGTCAGTAGCAATTAAAGTGTCTGAAATGG
66 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
15989119 GGACACTTTTTTCAAACGGACACAAAATCTTGTACACTTCGAGTTTCTT-GCTGAATGTTTTTGT
131 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT-TTAGCTGAATTTTTTTGT
** * *
15989183 GCACACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTACG-AAAAA
195 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAA
* * * * *
15989247 TTTT-AAAAATCCTGAACC--AAAAATGTATTCAAAAATCATTGAAAAAT-GGAAACAAGTCCTG
260 TTTTAAAAAATCCCGAACCGTAAAAA-GT-TTCAAAAATC-GTGAAAAATAGAAAACGAGTCGT-
*
15989308 CTTGCCATGAAACTTCACGTGAAGGCTTAA-GG-CCATTGTATGAATTTCGCAAGCCAT-AAAAT
321 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT-ACAAGCCATAAAAAT
* *** * * ** *
15989370 GGCATGGGCACATAGAAATATTGAAAATGTGGCC-AAACCAACCTACCACTTTATCGGATTTCAC
385 GGCATTGGCATGCAGAAATA-TGAAGATGT-GCCTAAACCCACCTACCACCCTATC-GA-TCCAC
* * ** **
15989434 GGCTTGGCGCATCCTGTCTCTCTGGCCG-GT--T--CTG-TAG-TGCCCGCCCGCT--TTTTTTC
446 GGCTT-GCGCATCCCGTCTCTCTGGCCGCGTAGTGCCCGCCCGCTGCCCGCCCGCTCGTTTCGTC
* * * * * * *
15989490 GG-TGTCTT-GACATACGGAGTTCGGTACCCAGTCTAAGATC-GA-CGGATCAAGCGGTTGCGAC
510 GGTTGGCTTAGGCATACGGAGTTC-ATTCCCAGTCTAAGATCAGACCGGACCGAG-GGTTGCGAT
* * * * * * *
15989551 AGTGAGGATCTAGCAGCACGTAGAGGGGGACTCGATCGGATCCGCTGGCTTGCGC-TCCTGCCCC
573 AG-CAGGATC-GGCAGCACATAGAGGGGGACCCGA-CCGATCC-CCGGCTTGCGCATCCCGCCCC
* * * *
15989615 TTTGGTCGGCTGAGCGCCCGCTA--CTCGTGTCGTGGGTTGACTTAGGCATACGAAGTTCATTCC
634 TCTGGCCGGCTGAGCGCCCGC-ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* *
15989678 CAGTCTAAGCATACGAAGTTTGTTTCTAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAACAC
698 CAGTCT----AT--G-A-------TC-AG----ACA--GGACC--A-C-AGGGTTGCGGCAGCAC
* * * ** *
15989743 ATGCTGGGCTCGAGCATATGCTGCTGCCATATTTTTCTTCGTTGGGGCACCA---TC--G--T--
738 ATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGAGCATCG
* * *
15989799 -CGGAGAACCTTACCGGCGGCATTGGGGTTCCGACAATCGAAGGGGCCGAGGGGGTGTGCGCACA
803 CCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG--GGGGGCG-GGGGGTGTGCGCACA
15989863 TGATGTGCG
865 TGATGTGCG
* *
15989872 ATGCGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
1 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
15989937 CCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
66 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * * *
15990002 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAACTAAATTTTTTTATG
131 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * *
15990067 CATGCC-AACAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTTCGAAAAAAC
196 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAT
* * *
15990131 TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCATCTTGC
261 TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* * * * * *
15990196 CATGGAACTTCACGTGAATGCTTAAAGGACCATTTTATGAATTTACAAGCCACAAAAAAGGCATT
326 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * * * *
15990261 GGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACGACCCTATCAATCCATGGCTTACGCA
391 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * *
15990326 TCCCGTCTCTCTGGTCGATGTAGTGCCCGCCCGCTCGCCTGCCCGCTCATTTCATCGGTTGGCTT
456 TCCCGTCTCTCTGGCCG-CGTAGTGCCCGCCCGCT-GCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * ** *
15990391 ACGCATACGGAATTCATTCCCAGTCTAAGATCAGACCGGATAGAGGGTTGCGGTAGCAGGATCGG
519 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGATAGCAGGATCGG
* * * * * * *
15990456 TAGCATGCAT--TGGAGGTCCCGACCGATCCCCGGGTTGTGCATCACGCCCCTCTGGCCGGCTGA
584 CAGCA--CATAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* *
15990519 GCGCCCGTC-CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
647 GCGCCCG-CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTATGATCA
* ** *
15990583 GATC-GGACCA-AGGGTTGTGATAGCACATGCTGGGCTCGGGCATCTGCTGGTGCCGCATTTTTC
711 GA-CAGGACCACAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
* * * * *
15990646 TTCGTCGGGGCACCATCATTGGAGCATCGCCAGAGAACCTGACTGGCGACATTGGGGTTCCGACG
775 TTCGTCGGGGCACCATC-GTCGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACG
* * *
15990711 ATC------AGAGGGGTGTGCACACATGATGTGCG
839 ATCGGGGGGCGGGGGGTGTGCGCACATGATGTGCG
*
15990740 ATGGGTGGTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
1 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
15990805 CCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTCTCTGAAATGG
66 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * * *
15990870 GGAAACTTTTTTGAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTTTTTT
131 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGT
* * *
15990935 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAAATCCTTTCGAAAAAA
195 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAA
* * * ** * *
15991000 TTTTAACAAACCCCGAGCCACAAAAAGTTTCAAAAATCGTGAAAAATAGAGAACAAGTCGTCTTG
260 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* *
15991065 CCTTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAC
325 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
15991130 TGGCATGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCAATCCATGGCTTGCGC
390 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * *
15991195 ATCCCGTCTCTCCGGCCGGCATAGTACCCGCCCGCCTGCCTGCCCGTTCGTTTCGTCGGTTGGCT
455 ATCCCGTCTCTCTGGCC-GCGTAGTGCCCGCCCG-CTGCCCGCCCGCTCGTTTCGTCGGTTGGCT
*
15991260 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGATAGCAGGATCG
518 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGATAGCAGGATCG
* ** * *
15991325 GCAGCTCATAGAGGGGGACCCGACCGATCCTGGGCTTGCGCATCCCACCCCTCTGGCTGGCTGAG
583 GCAGCACATAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * *
15991390 CACCCGCACGCTCGTTTCGTTGATTGACTTAGGCATACGGAGTTCATTCCCAGTCTATGATCAGA
648 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTATGATCAGA
15991455 CAGGACCACA-GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
713 CAGGACCACAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
* * *
15991519 GTCGGGGCACCATCGCCAGAGCATCGCCGGAGAACCTGACCGACTGCATTGGGGTTCCGACGATC
778 GTCGGGGCACCATCGTC-GAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC
15991584 GGGGGGCGGGGGGTGTGCGCACATGATGTGCG
842 GGGGGGCGGGGGGTGTGCGCACATGATGTGCG
* * *
15991616 ATGGGTGCTGGTTCTTGGTCCTTATATTGGCCCCCTATCCCTCGTCAAACCTCGAGAACTCACAC
1 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
15991681 CCCCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTTGCCGTTAAAGTGTCTGAAATGG
66 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
15991746 GGACACTTTTTTCAATTGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
131 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
*
15991811 CATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAT
196 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAT
* ** * * *
15991876 TTTAAAAAATCCCGCACCCCAAAAGGTTTCAAAAATCATGAAAAATAGAAAACGTGTCGTCTTGC
261 TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* *
15991941 CATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCGTT
326 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
15992006 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCGACCACCCTATCGATCCACGGCTTGTGCA
391 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* *
15992071 TCTCGTCTCTCTGGCCAGCGTAGTGCCCGCCCGTCTGCCCGCCCGCTCATTTCGTCGGTTGGCTT
456 TCCCGTCTCTCTGGCC-GCGTAGTGCCCGCCCG-CTGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* ** * * *
15992136 AGGCATACAGAGTTCAGACCCAGTCTAAGATTAGACCGGA-TGAAGGGTTAC-AGTAGCAGGATC
519 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCG-AGGGTTGCGA-TAGCAGGATC
* * ** * *
15992199 GGCAGTACACAGAGGGGGACCCGACCGATCCTTGACTTGCGCATCTCGCCCCTCTGGCCGGCTGA
582 GGCAGCACATAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * **
15992264 GCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAACCATAC
647 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT----AT--
* * *
15992329 GAAGTTCATTCCCCATCTAAGTTCGGACTAGACCGAGGGTTGCGGCTGCACATGCTGGGCTCGAG
706 G-A--TCA-----GA-C--A----GGAC--CA-C-AGGGTTGCGGCAGCACATGCTGGGCTCG-G
* * * *
15992394 G-AAGTGCTGGTGCCGTATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATTGCCGGAGAACCTG
751 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GAGCATCGCCGGAGAACCTG
* * * * ** ** **
15992458 ACCGGCCGCATTGGGCTTTCGACGAT----TGG-GGGGAATGTGCATACATGATGTATG
815 ACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCGGGGGGTGTGCGCACATGATGTGCG
* *
15992512 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTCAAGAACTCACAC
1 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
15992577 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGTCGTTAAAGTGTCTGAAATGG
66 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
15992642 GGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTG
131 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* *
15992707 CATGCCAACAAAAATACAAGGATCACGTCTACTAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAT
196 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAT
* * * *
15992772 TTTAAAAAATCCCGAATCGTAAAAAGTTTCGAAAATCATGAAACATAGAAAACGAGTCGTCTTGC
261 TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* * * **
15992837 CATGAAACTTCACGTCAAGGCTTAAGAGACCATTGTATGAATTTACAATCCATAAAAATGGTGTT
326 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * * *
15992902 GGCATGTAGAAATATGAAGATGTGCCTAAACCTACCTACCACCCTATTGATCCACGGCATGTGCA
391 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * *
15992967 TCCCGTCTCTCTGGCCGACGTAGTGCCC-ACC-C-GCCCGTCCGCTCGTTTCATCGGTTGGCTAA
456 TCCCGTCTCTCTGGCCG-CGTAGTGCCCGCCCGCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * *
15993029 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTAC-ATTAGCAGGATTGG
520 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGA-TAGCAGGATCGG
** * * * * *
15993093 CAAAACACAGAGTGGGACCTGGCCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG-TCGAG
584 CAGCACATAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT-GAG
* * * * * *
15993157 TGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATGCGGAGTTCAATCCCAGTCTAAGATCGGA
648 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTATGATCAGA
* * * * ** *
15993222 TCA-GACC-GAGGGTT-CTGGTAGTAGATGCTGGGCTCGGGCATGTGCTGGTGCCAAATTTTACT
713 -CAGGACCACAGGGTTGC-GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
** * * * * * *
15993284 TCG-CAAAGGCACCATCATCGAAGCATCACCGGAGAACCTGATCGGCGGC-TTTGGGTTTCTAGC
776 TCGTC-GGGGCACCATCGTCG-AGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGA-C
15993347 GATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
838 GATC-GGGGGG-CGGGGGGTGTGCGCACATGATGTGCG
* * *
15993385 ATAGGTGCTGGTACTTGGCCCTTATATTTGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAG
1 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
15993450 CCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
66 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * * *
15993515 GGAGACCTTTTTCAAATGGTCACAAAATCTTGCACACTTCGAGTTTTTACCTGAA-TTTTTTGTG
131 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * ** *
15993579 CATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCATCGCGAAATAAT
196 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAT
*
15993644 TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAGACGAGTCGTCTTGC
261 TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
*
15993709 CATGAAAC-TCACGTGAAGGCTTATGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
326 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * *
15993773 GGCATGCAAAAATATAAAGATGTGACTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
391 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * *
15993838 TCCCGTCTCTCTGGCTGATGTAGAGCCCGCCCGC-CCACCAGCCCGCTCGTTTCGTCGATTGGCT
456 TCCCGTCTCTCTGGCCG-CGTAGTGCCCGCCCGCTGC-CC-GCCCGCTCGTTTCGTCGGTTGGCT
** * * * *
15993902 TAGGCATACGGAGTTCATTCATAGTCTAAGATC-GAACCGAACCAAGGGTTGC-AGCAGCAAGAT
518 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGA-TAGCAGGAT
* * ** * * * * * * *
15993965 TGGTAGCACGCAGAGGAGGACCCGGCTGATCCCCAGCTTGCGCATCTCGCCACTCTGGCCTGCTG
581 CGGCAGCACATAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * *
15994030 AGCGCCCGCACGGTAGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATA
646 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT----AT-
* * * *
15994095 CGGAGTTCATTCCCAGTCTACGATCGGATCAGACCGAGGGTTACGGGAGCACATGCTAGGCTCGG
706 ----G---A-T--CAG---AC-A--GGA-C-CA-C-AGGGTTGCGGCAGCACATGCTGGGCTCGG
** * ** * *
15994160 GCATGTGCTGGTTTCGAATTTTTCTT--T------ACC-GGGTC-ACCATCGTCGGAGAACCTGA
751 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGAGCATCGCCGGAGAACCTGA
* *
15994215 CCGGAGGCATTGGGGTTCCGGA-GATCGGGGGTACCGGGGGGTGTGCGCACATGATGTGCG
816 CCGGCGGCATTGGGGTTCC-GACGATCGGGGG--GCGGGGGGTGTGCGCACATGATGTGCG
*
15994275 ATGGGAGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
1 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
15994340 CCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
66 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * * * *
15994405 GGGCACTTTTTTCAAATGGTCACAATATCTTGTACACTTCGAGTTTTTAGTTGAACTTTCTTGTG
131 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
** * * *
15994470 CATGCCAGCAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTGC-TTCTGAAAAAT
196 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAAAAA
* ** *
15994534 TTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCTTGAAAAATAGAAAACGAGTCGTCTTG
260 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* *
15994599 CCATGAAAGTTCACGTGAAGACTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAATGGCAT
325 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
15994663 TGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCAC
390 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * * *
15994728 ATCCCGTCTCTCTAGTCGGCGTAGTGCCCGCTCGTCCGTCCGCCCACTCATTTCGTCGGTTGGCT
455 ATCCCGTCTCTCT-GGCCGCGTAGTGCCCGCCCG-CTGCCCGCCCGCTCGTTTCGTCGGTTGGCT
15994793 TAGGCATACGGAGTTCATTCCCAGTCTAAG
518 TAGGCATACGGAGTTCATTCCCAGTCTAAG
15994823 CATACGGAGT
Statistics
Matches: 5011, Mismatches: 623, Indels: 378
0.83 0.10 0.06
Matches are distributed among these distances:
864 6 0.00
865 45 0.01
866 200 0.04
867 142 0.03
868 282 0.06
869 272 0.05
870 575 0.11
871 147 0.03
872 137 0.03
873 195 0.04
874 7 0.00
875 633 0.13
876 197 0.04
877 34 0.01
878 5 0.00
879 3 0.00
881 21 0.00
882 94 0.02
883 255 0.05
884 73 0.01
885 42 0.01
886 8 0.00
887 4 0.00
888 9 0.00
889 7 0.00
890 250 0.05
891 313 0.06
892 298 0.06
893 92 0.02
894 24 0.00
895 10 0.00
896 473 0.09
897 3 0.00
898 1 0.00
899 1 0.00
900 1 0.00
901 149 0.03
902 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (873 bp):
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAT
TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGCGTAGTGCCCGCCCGCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGATAGCAGGATCGGCA
GCACATAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTATGATCAGACAG
GACCACAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
GGGGCACCATCGTCGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGG
GGCGGGGGGTGTGCGCACATGATGTGCG
Found at i:15992822 original size:896 final size:892
Alignment explanation
Indices: 15991465--15994822 Score: 4354
Period size: 896 Copynumber: 3.8 Consensus size: 892
15991455 CAGGACCACA
* *
15991465 GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACC
1 GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGAATTTTTCTTCGTCGAGGCACC
* * * *
15991530 ATCGCCAGAGCATCGCCGGAGAACCTGACCGACTGCATTGGGGTTCCGACGATCGGGGGGCGGGG
66 ATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGAT---GGGGCGGGG
* * *
15991595 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTTCTTGGTCCTTATATTGGCCCCCTATCCCTCG
128 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* *
15991660 TCAAACCTCGAGAACTCACACCCCCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTTG
193 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* *
15991725 CCGTTAAAGTGTCTGAAATGGGGACACTTTTTTCAATTGGTCACAAAATCTTGTACACTTCGAGT
258 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
15991790 TTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGC
323 TTTTAGCTGAA-TTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGC
* ** *
15991855 CAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGCACCCCAAAAGGTTTCAAAAATCATGAAAA
387 CAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAA
* *
15991920 ATAGAAAACGTGTCGTCTTGCCATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTT
452 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* *
15991985 ACAAGCCATAAAAATGGCGTTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCGACCACCC
517 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * *
15992050 TATCGATCCACGGCTTGTGCATCTCGTCTCTCTGGCC-AGCGTAGTGCCCGCCCGTCTGCCCGCC
582 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCGCCCGTCCGCCCGCC
* ** *
15992114 CGCTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCAGACCCAGTCTAAGATTAGACCGGATGA
646 CGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACGA
* * * *
15992179 AGGGTTACAGTAGCAGGATCGGCAGTACACAGAGGGGGACCCGACCGATCCTTGACTTGCGCATC
711 AGGGTTACAGTAGCAGGATTGGCAGAACACAGAGGGGGACCCGGCCGATCC-CGACTTGCGCATC
*
15992244 TCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAAAGTT
775 TCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTT
15992309 CATTCCCAGTCTAACCATACGAAGTTCATTCCCCATCTAAGTTCGGACTAGACCGAG
840 CATTCCCAGTCTAA-CATACG-AGTTCATT-CCCATCTAAG-TCGGACTAGACCGAG
* * *
15992366 GGTTGCGGCTGCACATGCTGGGCTCGAGG-AAGTGCTGGTGCCGTATTTTTCTTCGTCGAGGCAC
1 GGTTGCGGCAGCACATGCTGGGCTCG-GGCATGTGCTGGTGCCGAATTTTTCTTCGTCGAGGCAC
* * * * * **
15992430 CATCGTCGGAGCATTGCCGGAGAACCTGACCGGCCGCATTGGGCTTTCGACGAT-TGG-GGGGAA
65 CATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATGGGGCGGGGGG
** ** *
15992493 TGTGCATACATGATGTATGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATC
130 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* *
15992558 AAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGTC
195 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* *
15992623 GTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTT
260 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * *
15992688 TTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACTAAGTTTGGGGCCA
325 TTAGCTGAATT-TTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCA
* * *
15992753 AAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAATCGTAAAAAGTTTCGAAAATCATGAAACAT
389 AAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAAT
* *
15992818 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTCAAGGCTTAAGAGACCATTGTATGAATTTAC
454 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* ** * *
15992883 AATCCATAAAAATGGTGTTGGCATGTAGAAATATGAAGATGTGCCTAAACCTACCTACCACCCTA
519 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * * *
15992948 TTGATCCACGGCATGTGCATCCCGTCTCTCTGGCCGACGTAGTG-CC-CAC--CCGCCCGTCCGC
584 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCCCGCCCGC
* * * ** * *
15993009 TCGTTTCATCGGTTGGCTAAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCG-AG
649 TCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGA-CGAAG
* * * * * * *
15993073 GGTTACATTAGCAGGATTGGCAAAACACAGAGTGGGACCTGGCCAATCCCCGGCTTGCGCATCCC
713 GGTTACAGTAGCAGGATTGGCAGAACACAGAGGGGGACCCGGCCGAT-CCCGACTTGCGCATCTC
* * * *
15993138 GCCCCTCTGGCCGG-TCGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATGCGGAGTTC
777 GCCCCTCTGGCCGGCT-GAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTC
* *
15993202 AATCCCAGTCTAAGAT-CG-G--------------A-T----C-AGACCGAG
841 ATTCCCAGTCTAACATACGAGTTCATTCCCATCTAAGTCGGACTAGACCGAG
* * * * * *
15993232 GGTT-CTGGTAGTAGATGCTGGGCTCGGGCATGTGCTGGTGCCAAATTTTACTTCG-CAAAGGCA
1 GGTTGC-GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGAATTTTTCTTCGTC-GAGGCA
* * * * * * **
15993295 CCATCATCGAAGCATCACCGGAGAACCTGATCGGCGGCTTTGGGTTTCTAGCGATCGGGGGGGCC
64 CCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTC---CGA-CGATGGGG-C
* *
15993360 GGGGGGTGTGCGCACATGATGTGCGATAGGTGCTGGTACTTGGCCCTTATATTTGCCCCCTATCC
124 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* *
15993425 CTCATCAAACCTCGAGAACTCACAGCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCA
189 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * *
15993490 GTAGCCATTAAAGTGTCTGAAATGGGGAGACCTTTTTCAAATGGTCACAAAATCTTGCACACTTC
254 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
*
15993555 GAGTTTTTACCTGAATTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGG
319 GAGTTTTTAGCTGAATTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGG
* ** * *
15993620 GGCCAAAACTCATCGCGAAATAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGA
384 GGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGA
* *
15993685 AAAATAGAAGACGAGTCGTCTTGCCATGAAAC-TCACGTGAAGGCTTATGGGACCATTGTATGAA
449 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * *
15993749 TTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATAAAGATGTGACTAAACCCACCTACCA
514 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * * * *
15993814 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGATGTAGAGCCCGCCCGCCCACCAG
579 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCCCG
* * ** * *
15993879 CCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCATAGTCTAAGA-TCGAACCGAA
644 CCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAG-ACCGGA
* * * * * * * * * *
15993943 CCAAGGGTTGCAGCAGCAAGATTGGTAGCACGCAGAGGAGGACCCGGCTGATCCCCAGCTTGCGC
708 CGAAGGGTTACAGTAGCAGGATTGGCAGAACACAGAGGGGGACCCGGCCGATCCCGA-CTTGCGC
* * * *
15994008 ATCTCGCCACTCTGGCCTGCTGAGCGCCCGCACGGT-AGTTTCGTGGGTTGACTTAGGCATACAG
772 ATCTCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCA-TTTCATGGGTTGACTTAGGCATACAG
*
15994072 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTACGATCGGA-TCAGACCGAG
836 AGTTCATTCCCAGTCTAA-CATAC-GAGTTCATTCCCA-TCTAAG-TCGGACT-AGACCGAG
* * * **
15994133 GGTTACGGGAGCACATGCTAGGCTCGGGCATGTGCTGGTTTCGAATTTTTCTT--T------ACC
1 GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGAATTTTTCTTCGTCGAGGCACC
** * * *
15994190 -GGGTC--ACCATCGTCGGAGAACCTGACCGGAGGCATTGGGGTTCCGGA-GATCGGGGGTACCG
66 ATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCC-GACGAT--GGGG---CG
*
15994251 GGGGGTGTGCGCACATGATGTGCGATGGGAGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
125 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
*
15994316 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAG
190 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* *
15994381 TAGCCATTAAAGTGTCTGAAATGGGGGCACTTTTTTCAAATGGTCACAATATCTTGTACACTTCG
255 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * **
15994446 AGTTTTTAGTTGAACTTTCTTGTGCATGCCAGCAAAAATACAAGGATCATGTCTACCAAGTTTGG
320 AGTTTTTAGCTGAA-TTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGG
* * * ** *
15994511 GGCCAAAACTGC-TTCTGAAAAATTTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCTTG
384 GGCCAAAACTCCTTTC-GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATG
* *
15994575 AAAAATAGAAAACGAGTCGTCTTGCCATGAAAGTTCACGTGAAGACTTAAGGGACCATTGTATGA
448 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
*
15994640 ATTTACAAGCCAT-AAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACC
513 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * * * * *
15994704 ACCCTATCGATCCATGGCTTGCACATCCCGTCTCTCTAGTCGGCGTAGTGCCCGCTCGTCCGTCC
578 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCCC
*
15994769 GCCCACTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
643 GCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
15994823 CATACGGAGT
Statistics
Matches: 2130, Mismatches: 265, Indels: 134
0.84 0.10 0.05
Matches are distributed among these distances:
865 4 0.00
866 94 0.04
867 1 0.00
869 3 0.00
870 2 0.00
871 132 0.06
872 135 0.06
873 196 0.09
874 5 0.00
875 168 0.08
876 3 0.00
877 1 0.00
878 1 0.00
879 1 0.00
886 1 0.00
887 1 0.00
888 7 0.00
890 233 0.11
891 281 0.13
892 225 0.11
893 6 0.00
894 2 0.00
895 4 0.00
896 463 0.22
897 3 0.00
901 155 0.07
902 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (892 bp):
GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGAATTTTTCTTCGTCGAGGCACC
ATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATGGGGCGGGGGGT
GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
TAGCTGAATTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAA
ACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAG
AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
GCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCCCGCCCGCTC
ATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACGAAGGGT
TACAGTAGCAGGATTGGCAGAACACAGAGGGGGACCCGGCCGATCCCGACTTGCGCATCTCGCCC
CTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCC
CAGTCTAACATACGAGTTCATTCCCATCTAAGTCGGACTAGACCGAG
Found at i:15994093 original size:26 final size:26
Alignment explanation
Indices: 15994064--15994114 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
15994054 GTTGACTTAG
15994064 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
15994090 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATTCCCAGTCTA
15994115 CGATCGGATC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15994848 original size:26 final size:26
Alignment explanation
Indices: 15994796--15994848 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
15994786 GTTGGCTTAG
* *
15994796 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATATAA
*
15994822 GCATACGGAGTTCAGTT-TCAATATAA
1 GCATACGGAGTTCA-TTCCCAATATAA
15994848 G
1 G
15994849 ATTGGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATATAA
Found at i:15995471 original size:732 final size:732
Alignment explanation
Indices: 15994046--15995554 Score: 2144
Period size: 732 Copynumber: 2.1 Consensus size: 732
15994036 CGCACGGTAG
* * * *
15994046 TTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
1 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAA
* * * * *** *
15994111 TCTACGATCGGATCAGACCGAGGGTTACGGGAGCACATGCTAGGCTCGGGCATGTGCTGGTTTCG
66 TATAAGATCGGACCAGACCAAGGGTTACAACAGCACATGCTAGGCTCGGGCATGTGCTGGTGTCG
* * * *
15994176 AATTTTTCTTTACCGGGTCACCATCGTCGGAGAACCTGACCGGAGGCATTGGGGTTCCGGAGATC
131 AATTTTTCTTCACCGGGGCACCATCGTCGGAGAACCTGACCGGAGACATTGGGGTTCCGGAGACC
* **
15994241 GGGGGTACCGGGGGGTGTGCGCACATGATGTGCGATGGGAGCTGGTACTTGGCCCTTATATTGGC
196 GGGGGTACCGGGGGGTGTGCACACATGATGTGCGATGGGAGCTGGTACTTGGCCCTTATATTCAC
15994306 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGT
261 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGT
* *
15994371 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGGCACTTTTTTCAAATGGTCACAATATCTT
326 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * **
15994436 GTACACTTCGAGTTTTTAGTTGAACTTTCTTGTGCATGCCAGCAAAAATACAAGGATCATGTCTA
391 GTACACTTCGAGTTCTTAGTTGAACTTTCTTATGCATGCCAAAAAAAATACAAGGATCATGTCTA
* * ** * **
15994501 CCAAGTTTGGGGCCAAAACTGCTTCTGAAAAATTTTTAAAAAATCCCAAACCGTAAAAAGTTTTG
456 CCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCA
* * * * * *
15994566 AAAATCTTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAGTTCACGTGAAGACTTAAGGGACC
521 AAAATCATGAAAAATAAAAAACGAGTCGTCATGCCATAAAACTTCACGTGAAGACTTAAGAGACC
* ** *
15994631 ATTGTATGAATTTACAAGCCATAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACC
586 ATTGTATGAATTTACAAGCCATAAAATGGCATTCGCACACAAAAATATGAAGATGTACCTAAACC
* * *
15994696 CACCTACCACCCTATCGATCCATGGCTTGCACATCCCGTCTCTCTAGTCGGCGTAGTGCCCGCTC
651 AACCTACCACCCTATCGATCCATGGCTTGCACATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCC
* **
15994761 GTCCGTCCGCCCACTCA
716 GGCCACCCGCCCACTCA
*
15994778 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAGTT-TCA
1 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA-TTCCCA
* * * *
15994842 ATATAAGATTGGACCGGACCAAGGGTTCCAACAGCACATGCTATGCTCGGGCATGTGCTGGTGTC
65 ATATAAGATCGGACCAGACCAAGGGTTACAACAGCACATGCTAGGCTCGGGCATGTGCTGGTGTC
* * * *
15994907 GCATTTTTCTTCACCGGGGCACCATCGTCGGATAACCTGATCGGCGACATTGGGGTTCC-GACGA
130 GAATTTTTCTTCACCGGGGCACCATCGTCGGAGAACCTGACCGGAGACATTGGGGTTCCGGA-GA
* *
15994971 CCGGGGG-GCCAGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
194 CCGGGGGTACC-GGGGGGTGTGCACACATGATGTGCGATGGGAGCTGGTACTTGGCCCTTATATT
* * *
15995035 CACCCTCTATCCCTCATCAAACCTTGGGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
258 CACCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* *
15995100 GGTTTGCTGCCAGTAGGCATTAAAGTGTCTGAAATGGGGACAC-TTTTTCAAATGGTCACAAAAT
323 AGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * *
15995164 CTTGTACACTTCGAGTTCTTAGTTGAATTTTTTTATGCATTCCAAAAAAAATACAAGGATCATGT
388 CTTGTACACTTCGAGTTCTTAGTTGAACTTTCTTATGCATGCCAAAAAAAATACAAGGATCATGT
* *
15995229 CTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTGAAAAATCCCGAACCGTAAAAAGTT
453 CTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTT
* *
15995294 TCAAAAATCATGAAAAATAAAAAACGAGTCGTCATGCCTTAAAACTTCACGTGAAGGCTTAAGAG
518 TCAAAAATCATGAAAAATAAAAAACGAGTCGTCATGCCATAAAACTTCACGTGAAGACTTAAGAG
* * * *
15995359 ACCATTGTATGGATTTACAAGCCATAAAAATGGCATTCGCACATAAAAATATGATGATGTGCCTA
583 ACCATTGTATGAATTTACAAGCCAT-AAAATGGCATTCGCACACAAAAATATGAAGATGTACCTA
** * * * *
15995424 AACCAACCTACCACTTTATCGATCCATTGCTTGCGCATCCTGTCTCTCTGGCCGGCGTAGTGCCC
647 AACCAACCTACCACCCTATCGATCCATGGCTTGCACATCCCGTCTCTCTAGCCGGCGTAGTGCCC
** **
15995489 GCCCGGCCACCCGCCTGCTTG
712 GCCCGGCCACCCGCCCACTCA
* * * * *
15995510 CTTCATCGGTTGGCTTAGGTATACGGAGTTCACTCCCACTCTAAG
1 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
15995555 ATCAGACCGG
Statistics
Matches: 683, Mismatches: 90, Indels: 8
0.87 0.12 0.01
Matches are distributed among these distances:
731 219 0.32
732 462 0.68
733 2 0.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (732 bp):
TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAA
TATAAGATCGGACCAGACCAAGGGTTACAACAGCACATGCTAGGCTCGGGCATGTGCTGGTGTCG
AATTTTTCTTCACCGGGGCACCATCGTCGGAGAACCTGACCGGAGACATTGGGGTTCCGGAGACC
GGGGGTACCGGGGGGTGTGCACACATGATGTGCGATGGGAGCTGGTACTTGGCCCTTATATTCAC
CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGT
TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
GTACACTTCGAGTTCTTAGTTGAACTTTCTTATGCATGCCAAAAAAAATACAAGGATCATGTCTA
CCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCA
AAAATCATGAAAAATAAAAAACGAGTCGTCATGCCATAAAACTTCACGTGAAGACTTAAGAGACC
ATTGTATGAATTTACAAGCCATAAAATGGCATTCGCACACAAAAATATGAAGATGTACCTAAACC
AACCTACCACCCTATCGATCCATGGCTTGCACATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCC
GGCCACCCGCCCACTCA
Found at i:15996591 original size:26 final size:26
Alignment explanation
Indices: 15996555--15996605 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
15996545 GTTGACTTAG
*
15996555 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15996581 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
15996606 GGATCGTACT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15996934 original size:882 final size:879
Alignment explanation
Indices: 15994778--15998202 Score: 3857
Period size: 882 Copynumber: 3.9 Consensus size: 879
15994768 CGCCCACTCA
* * *
15994778 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAGTT-TCA
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA-TTCCCA
* * * ** ** *
15994842 ATATAAGATTGGACCGGACCAAGGGTTCCAACAGCACATGCTATGCTCGGGCATGTGCTGGTGTC
65 ATCTAAGATCGGACCGGACCGAGGGTT-CTGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * *
15994907 GCATTTTTCTTCACCGGGGCACCAT--C--G--T---CGGATAACCTGA-TCGGCGACATTGGGG
129 GCATTTTTCTTCACCGGGGCACCATCGCGAGCATCACCGGAGAACCTGACT-GGCGGCATTAGGG
** * * *
15994962 TTCCGACGACCGGGGGGCCAGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCC
193 TTCCGATAATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
** * * *
15995027 CTTATATTCACCCTCTATCCCTCATCAAACCTTGGGAACTCACACCCCCTTAAAGAGCATTTGAG
258 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
* *
15995092 ATTTTACAGGTTTGCTGCCAGTAGGCATTAAAGTGTCTGAAATGGGGACAC-TTTTTCAAATGGT
323 ATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* * * * *
15995156 CACAAAATCTTGTACACTTCGAGTTCTTAGTTGAATTTTTTTATGCATTCCAAAAAAAATACAAG
388 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
* * *
15995221 GATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTGAAAAATCCCGAACCGT
453 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGT
* * * *
15995286 AAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCATGCCTTAAAACTTCACGTGAAGG
518 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* * * ** *
15995351 CTTAAGAGACCATTGTATGGATTTACAAGCCATAAAAATGGCATTCGCACATAAAAATATGATGA
583 CTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAATGGCATTGGCACGCAAAAATATGAAGA
* * *
15995416 TGTGCCTAAACCAACCTACCACTTTATCGATCCATTGCTTGCGCATCCTGTCTCTCTGGCCGGCG
647 -GTG-C----CCTACC-ACC-C--TATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
* * * * * *
15995481 TAGTGCCCGCCCGGCCACCCGCCTGCTT-GCTTCATCGGTTGGCTTAGGT-ATACGGAGTTCACT
702 TAGTGCCCGCCCGTCCGCCCGCCCGCTTCGTTTCGTCGGTTGGCTTAGGTCATACGGAGTTCATT
*
15995544 CCCACTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGTAGGATCAGCAGCACGTAGAGGGGGAC
767 CCCAGTCTAAGATCAGACC-GACCGA-GG--GT----GT--GATCAGCAGCACGTAGAGGGGGA-
* * * *
15995609 CCGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCATGCTCG
821 CCGGCCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC-CCCGCACGCTCG
* ** * * * *
15995669 TTTCGTGGGTTGCCTTAGGCATACAAAGTTGATTCCCAGTCTAAGCATACGGATTTCGTTCCTAA
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAA
* * * **
15995734 TCTAAGATCGGACCAGACTGAGGGTTCCGACAGCACATGCTGGGCTCAAGCATGTGCTGGTGCCG
66 TCTAAGATCGGACCGGACCGAGGGTTCTG-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * * *
15995799 TATTTTTCTTTATC--GG-AGCAT--C--G--T--CC-GAGAACCTGACTGGCGGCATTAGGGTT
130 CATTTTTCTTCACCGGGGCACCATCGCGAGCATCACCGGAGAACCTGACTGGCGGCATTAGGGTT
* * * **
15995852 CCGGTGATCGTGGGG-TTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
195 CCGATAATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
*
15995916 TATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
260 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* *
15995981 TTTACAGGTTTGCTACTAGTA-CCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCA
325 TTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* * *
15996045 CAAAATCTTGTACACTTCGAGTTTTTACCTAAATTTTTTTGTCCATGCCAACAAAAATACAAGGA
390 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* *
15996110 TCACGTCTACCAAGTTT-GAGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGTAA
455 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAA
** *
15996174 AGGGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
520 AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
*
15996239 TAAGGGACCATTGTATGAATTTACAAGCCATAACAATGGCATTGGCATGCAAAAATATGAAGA-T
585 TAAGGGACCATTGTATGAATTTACAAGCCATAA-AATGGCATTGGCACGCAAAAATATGAAGAGT
* *
15996303 G-CCTGCCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGCGCCCGCCC
649 GCCCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC
* * * * *
15996367 GTCCGCCCACCCG-TTCATCTCGTCGGTTGGCTTAGGCATACGCATACGGAGTGCATTCCTAGTC
714 GTCCGCCCGCCCGCTTCGTTTCGTCGGTTGGCTTAGG--T---CATACGGAGTTCATTCCCAGTC
* * * *
15996431 AAATATCAGACCAGACCGAGGGT-T-A-CGGCAGCACGTAGAGGGGGACTCGGCCAATCCCTGGC
774 TAAGATCAGACC-GACCGAGGGTGTGATCAGCAGCACGTAGAGGGGGAC-CGGCCGATCCCTGGC
* * * *
15996493 TTACGCATCCTGGCCCTCTGGCCGGCTAAGCACCCGCACGCTCG
837 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGC-CCCGCACGCTCG
* *
15996537 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCATTCTAAGCATACGGAGTTCATTCCCAG
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAA
* * * * * * *
15996602 TCTAGGATCGTACTGGGCCGAGGGTTGTGCAGCACATGCTGGCCTCGTGCATGTGCTGGTG-CGT
66 TCTAAGATCGGACCGGACCGAGGGTTCTGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG-
**
15996666 CATTTTTCTTCGTCGGGGCACCATCGCCTGAGCATCACCGGAGAACCTGACTGGCGGCATTAGGG
130 CATTTTTCTTCACCGGGGCACCATCG-C-GAGCATCACCGGAGAACCTGACTGGCGGCATTAGGG
* * *
15996731 TTCCGATAATCAGGGGGCCGGGGGGGTGTACGCACATGATGTGC-ATTGGGTGTTGGTACTTGGC
193 TTCCGATAATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGA-TGGGTGCTGGTACTTGGC
*
15996795 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAGCCCCTTAAAGAGCATTTGA
257 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* *
15996860 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT-GGGACACTTTTTTCAAATGG
322 GATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* * *
15996924 TCACAAAATCTTGTACATTTTGAGTTTTTTGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
387 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* * * **
15996989 GGATCATGTCTACCAGGTTTGGGGCCAAAACTCCTTCC-GAAAAATTTTAAAAAATCTAGAACCG
452 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCG
* * *
15997053 CAAAAAGTTTTAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAG
517 TAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* * *
15997118 GCTTAAGGGACCATTGTATCAATTTACAAGCCATAAAATTGGCATTGGCATGCAGAAATATGAAG
582 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA-TGGCATTGGCACGCAAAAATATGAAG
* * *
15997183 ATGTGCCTAAACCCACCTGCCACCCTATCAATCCATGGCTTGCGCATCCCGTCTCTCTAGCCGGC
646 A-GTG--------C-CCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* * *
15997248 GTAATGCCCGTCCGTCCGCCCGCCCGCTT-GTTTCGTCGGTTGGCTTA-GTCATACGGATTTCAT
701 GTAGTGCCCGCCCGTCCGCCCGCCCGCTTCGTTTCGTCGGTTGGCTTAGGTCATACGGAGTTCAT
* *
15997311 TCCCAGTCTAAGATC-GAACCGAACTGAGGGTTGGGGCAGTAGGATCAGCAGCACGCAGAGGGGG
766 TCCCAGTCTAAGATCAG-ACCG-ACCGAGGG-T------GT--GATCAGCAGCACGTAGAGGGGG
* * * * **
15997375 ACCTAGTCGATCCCTGGCTTGCGCATCCCACCCCTCAGGCCGGCTGAGCCCTCGCACATTCG
820 ACC-GGCCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCCC-CGCACGCTCG
**
15997437 TTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C---G-----------
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAA
*
15997486 ----A-ATC--A---GACCGAGGGTTAC-GATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
66 TCTAAGATCGGACCGGACCGAGGGTT-CTG-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
*** * *
15997540 ATTTTTTTCTTCACCGGGGCACCATCGTTCGATCATCACCGGAGAACCTGACCGGCGGCATT-GA
129 GCATTTTTCTTCACCGGGGCACCATCG--CGAGCATCACCGGAGAACCTGACTGGCGGCATTAG-
* * * * * *
15997604 GGTTTCGATGATTGGGGGGGCC-GGGGGGTGTGTGCAAATGGTGTGCGATGGGTGCTGGTACTTG
191 GGTTCCGAT-AATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* *
15997668 GCCCTTGTATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTT
255 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* * * * * * *
15997733 GAGATTGTACAGGTTTGCTACCAATAGCCATTAAAATGGCTGAAATAGGGACATTTTTTTCAAGT
320 GAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * * *
15997798 GGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTGTTTTGGGCATGCCAACAAATATAC
385 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* * *
15997863 AAGGATTACGTCTACCAACTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAAC
450 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAAC
* *
15997928 CGTAACAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
515 CGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* * * *
15997993 A-GCTTTAAGGGACCATTGCATGAATTTACAAGCCTCTAAAATGGCATTGGCACGTAGAAATATG
580 AGGC-TTAAGGGACCATTGTATGAATTTACAAGCC-ATAAAATGGCATTGGCACGCAAAAATATG
*
15998057 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
643 AAGA-GTG--------C-CCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCC
* * * * *
15998122 GGCGTAGTACCCGCCCGCCCGCACGCCCGC-TCGTTTGGTCGGTTGGCTTAGG-CATACAGAGTT
698 GGCGTAGTGCCCGCCCGTCCGCCCGCCCGCTTCGTTTCGTCGGTTGGCTTAGGTCATACGGAGTT
15998185 CATTCCCAGTCTAAGATC
763 CATTCCCAGTCTAAGATC
15998203 GGATCGAACC
Statistics
Matches: 2199, Mismatches: 259, Indels: 166
0.84 0.10 0.06
Matches are distributed among these distances:
866 2 0.00
867 41 0.02
868 145 0.07
869 3 0.00
870 4 0.00
872 1 0.00
873 3 0.00
874 87 0.04
875 226 0.10
876 128 0.06
877 269 0.12
878 11 0.01
879 5 0.00
880 35 0.02
881 41 0.02
882 365 0.17
883 33 0.02
884 4 0.00
885 2 0.00
886 179 0.08
887 214 0.10
888 74 0.03
889 5 0.00
890 3 0.00
891 116 0.05
893 1 0.00
894 86 0.04
895 3 0.00
896 1 0.00
898 1 0.00
899 6 0.00
900 105 0.05
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (879 bp):
TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAA
TCTAAGATCGGACCGGACCGAGGGTTCTGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
ATTTTTCTTCACCGGGGCACCATCGCGAGCATCACCGGAGAACCTGACTGGCGGCATTAGGGTTC
CGATAATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
TTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAA
AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
AAGGGACCATTGTATGAATTTACAAGCCATAAAATGGCATTGGCACGCAAAAATATGAAGAGTGC
CCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGT
CCGCCCGCCCGCTTCGTTTCGTCGGTTGGCTTAGGTCATACGGAGTTCATTCCCAGTCTAAGATC
AGACCGACCGAGGGTGTGATCAGCAGCACGTAGAGGGGGACCGGCCGATCCCTGGCTTGCGCATC
CCGCCCCTCTGGCCGGCTGAGCCCCGCACGCTCG
Found at i:15999089 original size:26 final size:26
Alignment explanation
Indices: 15999059--15999111 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15999049 CTTGACTTAG
15999059 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
15999085 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15999111 G
1 G
15999112 GTCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16000702 original size:26 final size:26
Alignment explanation
Indices: 16000672--16000724 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16000662 GTTGACTTAG
16000672 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16000698 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16000724 G
1 G
16000725 ATCGGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16001898 original size:876 final size:866
Alignment explanation
Indices: 15999770--16003127 Score: 3820
Period size: 876 Copynumber: 3.9 Consensus size: 866
15999760 CCGCCCGCCT
* * * * *
15999770 GCCCGCCCACTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAAATCAGAC
1 GCCCGCACACTCGTTTCATAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* *
15999835 TGGACCGAGGGTTTC-GACAGCACATGCTAGGCTCAGGG-ATG-G-T-GT--CGTATTTTTCTTC
66 AGGACCGAGGGTTGCAG-CAGCACATGCTAGGCTC-GGGCATGTGTTGGTGCCGTATTTTTCTTC
* * ** * * *
15999893 ACCGAGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGATGGCATTGGGGTTTCGACAATC
129 ACC-AGGCACCATCG-CCGAGAATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC
* * * * * *
15999958 GGGGGGGCCAGGGGGGTGTGCGCACGTGATGTACGGTGGGTGCTAGTACTCGACCCTTCTATTGG
192 GGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGG
16000023 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
257 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* *
16000088 TTTGCTACCAATAGCCATTAAAATCG-CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
322 TTTGCTGCCAGTAGCCATTAAAAT-GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
** * *
16000152 TTGTACACTTCGAGTTTTTTTCTGAATTGTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTA
386 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTC
* * * *
16000217 TACCAAGTTTGGGTCCAAAAATCCTTCCGAAAAAATTTAAACAAAATCCTGAACCGTAAAAAGTT
451 TACCAAGTTTGGGGCCAAAAATCCCTCCGAAAAAATTTTAA-AAAATCCCGAACCGTAAAAAGTT
* * * *
16000282 TCAAAAATCGTGAAAAATAGTAAACGAGTCGTCTTGCCATGAAACTTCACATGACGGCTTAAGGG
515 TCAAAAATCGAGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
*
16000347 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTA
580 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTA
* * *
16000412 AACCCACCTACCACCCTATCGATCCACTGCTTGCGCATCCCGTTTCTCTGGCCGGGGCAGTGGCC
645 AACCCACCTACCACCCTATCGATCCA-TGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGGCC
* * * *
16000477 GCCTGTCCGCCCATCTCGTTTCGTCGGTTGGCTTAGGCATACTGAGTTCATTCCCAGTCTAAGAT
709 G-C---CCGCCC-GCTCATTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGAT
* * * * *
16000542 CAGATCGGACCAAGGGTTGCGATAGCTGGATCGCCAGCACGCAGAGGGGGACCCAACCAATCCCC
769 CAGATCGGACCGAGGGTTGCGACAGC-GGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCC
* * *
16000607 GGCTTATGTATCCCGCCCCTCTGGCCAGCTGAGC
833 GGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGC
* *
16000641 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
1 GCCCGCACACTCGTTTCATAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-CGG
** * * * ** * * * *
16000706 AGTTCA-TTCCCA--GTCT-AAG-ATCGGATCGGAC-GGGCTCGGGCATGT-TCTGGAGTCGCAT
64 A---CAGGACCGAGGGT-TGCAGCAGCACAT--G-CTAGGCTCGGGCATGTGT-TGGTGCCGTAT
* ** ** * * *
16000764 GTTTCTTCGTC-GG-GGCA---CC----ATCACCGGAGAACCTGACCGGCGGCAATAGGGTTCCG
121 TTTTCTTCACCAGGCACCATCGCCGAGAATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCG
* * * * * *
16000820 GCGATCGGGGGGGTC-GAGGGGGTATCCGCACATGATGTGCGATGGGTGCTGGTACTTGGCACTT
186 ACGATCGGGGGGGCCAG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTT
*
16000884 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGGGCATTTGAGATT
250 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* * *
16000949 TTACAAGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
315 TTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* *
16001014 AAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
380 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGAT
* * *
16001079 CAGGTCTACCAAGTTTGGGGCCAAAACTCCCTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAA
445 CACGTCTACCAAGTTTGGGGCCAAAAATCCCTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAA
** * * * *
16001144 AAGTTTTTAAGATCGAGAAAAATAAAAAACGGGTCGTCTT-CCATGAAACTTCAGGTGAAGGCTT
510 AAGTTTCAAAAATCGAGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* * * **
16001208 AAGGGACCATTGTATTAATGTACAAGCAATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
575 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGT
* *
16001273 GCCTAAACCCACGTACCACCCTATCGATCCATGGCTTGCACATCCCGTCTCTCTGGCCGGCGTAG
640 GCCTAAACCCACCTACCACCCTATCGATCCAT-GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
16001338 TGCCTGCCCGCCCGTCTGCCCGCTCATTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAG
704 TG---G-CCG-CC--C-GCCCGCTCATTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAG
** * * * * *
16001403 TCTAAGATTGGATCAGACCGAGGGTTGCGGCAGCAGGATTGGCAGCACACAGACGGGGACCCGAC
761 TCTAAGATCAGATCGGACCGAGGGTTGCGACAGC-GGATCGGCAGCACGCAGAGGGGGACCCGAC
* * *
16001468 CGATCCTCAGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGC
825 CGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGC
* *
16001510 GCCCGCACACTCGTTTCGTAGGTTGACTTAGGAATACGGAGTTCATTCCCAGTCTAAGATCGGAT
1 GCCCGCACACTCGTTTCATAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-
** * *
16001575 C-GGACCGAGGGTTGGGGCAGCACATGCTAGGCTTGGGCATGTGTTGGTGCCGTATTTTTCTTCG
65 CAGGACCGAGGGTTGCAGCAGCACATGCTAGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCA
* * * *
16001639 CCATGGCACCATCGCCGGAGAATCACCGGAGAACCTGACCGGCGGTATTGGAGTTCCGATGATCG
130 CCA-GGCACCATCGCC-GAGAATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCG
* * * *
16001704 GGTGGGCC-GGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAAATTGGC
193 GGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGC
*
16001768 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGGGCATTTGAGATTTTACAGGT
258 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
*
16001833 TTGCTGCCAGTAGCCATTAAAATGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
323 TTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * * *
16001898 GTACACTTCGAGTTTTTAGCTGAATGTTTTTATGCATGCCAACAAAAATACAAGGATCACGTGTA
388 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTA
* * ** * *
16001963 CCATGTTTGGGGCCAAAATTCCCTCCGAAAAAATTTTAAAAAATCTTGAACCGTAAAACGTTTCG
453 CCAAGTTTGGGGCCAAAAATCCCTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCA
*
16002028 AAAAT-TATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
518 AAAATCGA-GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
*
16002092 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAA
582 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAA
*
16002157 CCCACCAACCACCCTATCGATCCA----TG-G---CCCG-----C---CC-G-G-A---------
647 CCCACCTACCACCCTATCGATCCATGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGGCCGCC
* * *
16002194 ----CGCTCATTTCATCGGTTGGCTTAGGCATACTGAGTTCATTCCTAGTCTAAGATCAGACCGG
712 CGCCCGCTCATTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGG
* * * * * * *
16002255 ACCGAGTGTTCCGACAGCGAGATCGGTAGCATGTAAAGGGGGACCCGACCGATCCCCGGCTTGCG
777 ACCGAGGGTTGCGACAGCG-GATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGTG
* * * *
16002320 CATCCCGCCTCTCTAGTCGGTTGAGC
841 CATCCCGCCCCTCTGGCCGGCTGAGC
* * * *
16002346 GCCCGCACGCTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTT
1 GCCCGCACACTC----G-T---TT---CAT--AG-GTTGA----C--T-TAGGCATACGGAGTTC
* * * *
16002411 GTTCCTAGTCTAAGATCGGACAGGACCGAGGGTTGCAGCAGCACATGCTAGGCTCAGGCATGTGC
45 ATTCCCAGTCTAAGATCGGACAGGACCGAGGGTTGCAGCAGCACATGCTAGGCTCGGGCATGTGT
*** * * * *
16002476 TGGTGCCGTATTTTTCTTCATTGGGGCACCATTGTCGAAACATCACCGGAGAACCTGACCGACGA
110 TGGTGCCGTATTTTTCTTCA-CCAGGCACCATCGCCGAGA-ATCACCGGAGAACCTGACCGACGG
** * * * *
16002541 CATTGGGGTTCCGGTGATC-GGGGGGCCGGGGGGGTGTGTCCGCACACGATATGCAATGGGTGCT
173 CATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGGTGTG--CGCACATGATGTGCGATGGGTGCT
* * *
16002605 AGTACTTGGCCCTTATATTAGCCCCCTATACCACATCAAACCTCGAGAACTCACACCCCCTTAAA
236 AGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * * * **
16002670 GAGCATTTGAGATTTTATAGGTTTCCTGCCAGTAGCCATTAAAGTGTTTGAAATGGAAACACTTT
301 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGGGACACTTT
* * *
16002735 TTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGTTGAATTTTTTTGTGCGTGCCAAA
366 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
* * * * *
16002800 AAAAATACATGGATCACGTCCACCAACTTTGGGG-AAAAAATCCTTCCGAAAAAATTTTAAAAAA
431 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCCTCCGAAAAAATTTTAAAAAA
* * * *
16002864 TCCCGAACCGTAAAAAGTTTTAAAAATTGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACT
496 TCCCGAACCGTAAAAAGTTTCAAAAATCGAGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* *
16002929 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAACTGGCATTGGCACGCAG
561 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAG
* * *
16002994 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGATTGCGCATCCTGTCTC
626 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA-TGCTTGCGCATCCCGTCTC
* * *
16003059 TCTGGTCGGCGTAGTGCCCGCCCGCCCACCCGCTCGTTTCATCGGTTGGCTTAGGCATACA-ATG
690 TCTGGCCGGCGTAGTG---G-CCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACAGA-G
16003123 TTCAT
750 TTCAT
16003128 CACCGGGGCA
Statistics
Matches: 2105, Mismatches: 268, Indels: 204
0.82 0.10 0.08
Matches are distributed among these distances:
835 1 0.00
836 137 0.07
840 1 0.00
841 1 0.00
844 2 0.00
847 2 0.00
849 2 0.00
850 4 0.00
854 1 0.00
856 12 0.01
857 147 0.07
858 190 0.09
859 226 0.11
860 2 0.00
863 3 0.00
864 1 0.00
865 7 0.00
866 171 0.08
867 63 0.03
868 314 0.15
869 186 0.09
870 9 0.00
871 53 0.03
872 12 0.01
873 8 0.00
874 11 0.01
875 6 0.00
876 324 0.15
877 160 0.08
878 1 0.00
879 12 0.01
894 1 0.00
895 35 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (866 bp):
GCCCGCACACTCGTTTCATAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
AGGACCGAGGGTTGCAGCAGCACATGCTAGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCAC
CAGGCACCATCGCCGAGAATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGG
GGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCC
CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
CTGCCAGTAGCCATTAAAATGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCA
AGTTTGGGGCCAAAAATCCCTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAA
ATCGAGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
GTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCA
CCTACCACCCTATCGATCCATGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGGCCGCCCGCC
CGCTCATTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACCG
AGGGTTGCGACAGCGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCC
CGCCCCTCTGGCCGGCTGAGC
Found at i:16002408 original size:26 final size:26
Alignment explanation
Indices: 16002372--16002424 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16002362 GTTGACTTAG
16002372 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* ** *
16002398 GCATACGGAGTTTGTTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16002424 G
1 G
16002425 ATCGGACAGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16004601 original size:26 final size:26
Alignment explanation
Indices: 16004565--16004617 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16004555 GTTGACTTAG
16004565 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16004591 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16004617 G
1 G
16004618 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16005505 original size:26 final size:26
Alignment explanation
Indices: 16005469--16005518 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
16005459 GACTTAGGCG
* *
16005469 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGAAGTTCATTCCCAATCTAAGCA
16005495 TACGAAGTTCATTCCCAATCTAAG
1 TACGAAGTTCATTCCCAATCTAAG
16005519 ATCGGATCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAATCTAAGCA
Found at i:16005827 original size:890 final size:886
Alignment explanation
Indices: 16003894--16006293 Score: 3270
Period size: 892 Copynumber: 2.7 Consensus size: 886
16003884 CGACGATCGG
* * *
16003894 GGGTGCTGGTACTTGGCCCGTAAATTGG-CCCCTATCCCTCATCAAACCTCAAGAACTCACACCC
1 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
*
16003958 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAGGTGTCTGAAATGGGG
66 CCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA-GTGTCTGAAATGGGG
16004023 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTCA-CTGAATTTCTTTGTGC
130 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT-AGCTGAATTT-TTTGTGC
* * * * *
16004087 ATGCCAAAAAAAATAAAAGGATCATGACTACCAAGTTCGGGGCCAAAACCCCTTCCAAAAAAATT
193 ATGCCAAAAAAAATACAAGGATCA-CACTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* *
16004152 TTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCGTG-AAAATAGAAAACAAGTCGTCTTGCC
257 TTAAAAAATCC-GAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
* * *
16004216 ATGAAACTTCACTTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAGATGGCATTG
321 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * ** *
16004281 CACAT--AGAAATATTAAGATGTGCCTAAACCTGCCTACCACCTTATCGATCCA-TAGCTTGCAC
386 -GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACT-GCTTGCAC
** * * *
16004343 ATCCCGTCTCTCTAGTCGGTTTAGTGCTCGCCTGCCCGCCCGCT--T-ATTTCTTCGGTTGGCTT
449 ATCCCGTCTCTCTAGTCGGCATAGTGCCCGCCTGCCCGCCCGCTACTCGTTTCGTCGGTTGGCTT
* * * * *
16004405 AGGCATACGGAGTTCATTCTCAGTCTAAGATCAGACCAGACCGAAGGTTGTGGCAGTAGAATCGG
514 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CGAAGGTTGTGGTAGCAGGATCGG
** * * **
16004470 TAGCATGCAGAGGGGGACCCAGCCGATCCCCGGCTTGCGCATCCCGCCCTTCTGGGCAGCTGATG
578 TAGCACACAGAGGGGGACCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGACCAGCTGATG
* * *
16004535 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGA
642 CCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAA
* * * * ** * *
16004600 GTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTACGGTAGCCCATGCTGGGCTCTGACAT
707 GTTCATTCCCAATCTAAGATCGGACTAGACCAAGGGTTACGACAGCACATGCTGGGCTCAGACAT
* *
16004665 GTGCTGGTGCCACTTTTTTCTTCGTCAGGGCACCATCACCGGTGTGTCATCGGAGAAGCTGACTG
772 GTGCTGGTGCCACTTTTTTCTTCGTCAGGGCA-CATCA-------GTCATCGGAGAACCTGACCG
**
16004730 ACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
829 ACGGCATTGGGGTTCCGAAGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
* *
16004788 GGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCC
1 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
16004853 CCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
66 CCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT-AAGTGTCTGAAATGGGG
16004918 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTCTTTTGTGCA
130 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTGTGCA
* *
16004983 TGCCAAAAAAAATACAAGGATCACACCTACCATGTTTGGGGCCAAAAATCC-TCCGAAAAAATTT
194 TGCCAAAAAAAATACAAGGATCACA-CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* * * * *
16005047 TAAAAAATCTCAAACTGCAAAAAG-TTTAAGAAATCATGAAAAATAGAAAATGAGTCGTCTTGCC
258 TAAAAAATC-CGAACCGCAAAAAGTTTTGA-AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
16005111 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
321 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
*
16005176 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACTGCTTGCACAT
386 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACTGCTTGCACAT
* * * * * *
16005241 CCCGTCTCTCTGGCCGGCATAGTGCCCGCCTGCTCGCCCGCTAGCTCGTTTCGTCAGTCGGCTTT
451 CCCGTCTCTCTAGTCGGCATAGTGCCCGCCTGCCCGCCCGCTA-CTCGTTTCGTCGGTTGGCTTA
* * ** * * * * *
16005306 GGCATACTGAGTTCATTCCCAGTCCAAGATTGGACCGGGTCGAGGGTTGTGATAGCAGGATTGGC
515 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GGACGAAGGTTGTGGTAGCAGGATCGGT
* * *
16005371 AGCACACAGAGTGGGACCTGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTTACCGGCTGA-GC
579 AGCACACAGAGGGGGACC-GACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGACCAGCTGATG-
* *
16005435 ACCCACACGCTCGTTTTGTGGGTTGACTTAGGCGTACGGAGTTCATTCCCAGTCTAAGCATACGA
642 -CCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA
* * *
16005500 AGTTCATTCCCAATCTAAGATCGGA-TCAGACCAAGGGTTACGACAGCATATGCTTGGCTCAGGC
706 AGTTCATTCCCAATCTAAGATCGGACT-AGACCAAGGGTTACGACAGCACATGCTGGGCTCAGAC
* * * * * **
16005564 ATGTGCTGGTGTC-GTATTTTTCTTCGTCGGGGCA-A-CA-TCGTCGGGGAACCTGACCGGTGGC
770 ATGTGCTGGTGCCACT-TTTTTCTTCGTCAGGGCACATCAGTCATCGGAGAACCTGACCGACGGC
*
16005625 ATTGGGGTT-CTAAGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
834 ATTGGGGTTCCGAAGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
16005678 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
1 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
16005743 CCTGAAAGAGCATTTGAGATTTTGCAGGTTTGCTACCAGTAGCCATTGAAGTGTCTGAAATGGGG
66 CCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT-AAGTGTCTGAAATGGGG
*
16005808 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCA
130 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCA
* * * *
16005873 TGCCAAAAAAAATACATGGATCACGTCTACCAAGTTTGCGGTCAAAACTCCTTCCGAAAAAAATT
194 TGCCAAAAAAAATACAAGGATCAC-ACTACCAAGTTTGGGGCCAAAACTCCTTCCG-AAAAAATT
* * *
16005938 TTAAAAAATCCCGAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGCCATCTTGCC
257 TTAAAAAAT-CCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
* *
16006003 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCGATAAAAATGGCATTG
321 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * *
16006068 GCATGCAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCAT
386 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACTGCTTGCACAT
* * * * * * * *
16006133 CCCATCTCTCTAGTCGACGTAATGCCCGCCCGCCCGCCCACCCACTCGTTTTGTCGGTTGGCTTA
451 CCCGTCTCTCTAGTCGGCATAGTGCCCGCCTGCCCGCCC-GCTACTCGTTTCGTCGGTTGGCTTA
* * * *
16006198 GGCATACGGAGTTCAATCCCAGTCTAAGATCAGACCAGACTGAAGGTTGCGGTAGCAAGATCGGT
515 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC-GAAGGTTGTGGTAGCAGGATCGGT
16006263 AGCACACAGAGGGGGACCCGACCGATCCCCG
579 AGCACACAGAGGGGGA-CCGACCGATCCCCG
16006294 AGATGCACGC
Statistics
Matches: 1330, Mismatches: 145, Indels: 64
0.86 0.09 0.04
Matches are distributed among these distances:
889 5 0.00
890 292 0.22
891 8 0.01
892 306 0.23
893 13 0.01
894 68 0.05
895 285 0.21
896 91 0.07
897 1 0.00
898 2 0.00
899 3 0.00
900 115 0.09
901 141 0.11
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.26
Consensus pattern (886 bp):
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
CCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAGTGTCTGAAATGGGGA
CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATG
CCAAAAAAAATACAAGGATCACACTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
AAAATCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACTGCTTGCACATCCCGT
CTCTCTAGTCGGCATAGTGCCCGCCTGCCCGCCCGCTACTCGTTTCGTCGGTTGGCTTAGGCATA
CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACGAAGGTTGTGGTAGCAGGATCGGTAGCACAC
AGAGGGGGACCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGACCAGCTGATGCCCACACGC
TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCC
CAATCTAAGATCGGACTAGACCAAGGGTTACGACAGCACATGCTGGGCTCAGACATGTGCTGGTG
CCACTTTTTTCTTCGTCAGGGCACATCAGTCATCGGAGAACCTGACCGACGGCATTGGGGTTCCG
AAGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
Found at i:16006355 original size:26 final size:26
Alignment explanation
Indices: 16006325--16006377 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16006315 GTTGACTTAG
16006325 GCATACGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
*
16006351 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
16006377 G
1 G
16006378 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTACCAGTCTAA
Found at i:16006748 original size:220 final size:220
Alignment explanation
Indices: 16006351--16006789 Score: 560
Period size: 219 Copynumber: 2.0 Consensus size: 220
16006341 ACCAGTCTAA
* * * *
16006351 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAAGGCTGCAGTAGCTCATGCTAGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAAGGCTGCAGCAGCACATGCTAGG
* * * * * * * *
16006416 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCACCGGGGCATCGTCGCCGGAGCATCACCAGAGA
66 CTCGAGCATGTGCTAGTGCCACATTTTTCTTCACCGGGGCACCATCACCAGAGCATCACCAGAGA
* **
16006481 GCCTCACCGGTGGCATTGGGGTTCCGACGATCGGTGGGGCAGGGGGTGTACGCACATGATGTGCG
131 ACCTCACCGACGGCATTGGGGTTCCGACGATCGGTGGGGCAGGGGGTGTACGCACATGATGTGCG
16006546 ATGGGTGCTGGTACTTGGCCCTTAG
196 ATGGGTGCTGGTACTTGGCCCTTAG
* * *
16006571 GCATACGAAGTTCATTCCCAGTCTAAGATCGGA-TCAGACCG-ATGCTGCGGCAGCACATGCTGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACT-AGACCGAAGGCTGCAGCAGCACATGCTAG
*** ** *
16006634 GCTCGAGCATGTGCTAGTGCCACATTTTTCTTCGTTGGGGCACCATCACCAGAGCATCGTCGGAG
65 GCTCGAGCATGTGCTAGTGCCACATTTTTCTTCACCGGGGCACCATCACCAGAGCATCACCAGAG
* * * * * *
16006699 AACCTGACCGACGGTATTGGGGTTTCGATGATCAGG-GGGGCCGGGGGGTGTGCGCACATGATGT
130 AACCTCACCGACGGCATTGGGGTTCCGACGATC-GGTGGGG-CAGGGGGTGTACGCACATGATGT
16006763 GCGATGGGTGCTGGTACTTGGCCCTTA
193 GCGATGGGTGCTGGTACTTGGCCCTTA
16006790 TATTGGCCCC
Statistics
Matches: 186, Mismatches: 30, Indels: 6
0.84 0.14 0.03
Matches are distributed among these distances:
219 99 0.53
220 87 0.47
ACGTcount: A:0.18, C:0.25, G:0.34, T:0.23
Consensus pattern (220 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAAGGCTGCAGCAGCACATGCTAGG
CTCGAGCATGTGCTAGTGCCACATTTTTCTTCACCGGGGCACCATCACCAGAGCATCACCAGAGA
ACCTCACCGACGGCATTGGGGTTCCGACGATCGGTGGGGCAGGGGGTGTACGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTAG
Found at i:16007472 original size:26 final size:26
Alignment explanation
Indices: 16007435--16007487 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16007425 GTTGACTTAG
*
16007435 GCATATAGAGTTCATTACCAGTGTAA
1 GCATATAGAGTTCATTACCAGTCTAA
*
16007461 GCATAT-GAAGTTCATTCCCAGTCTAA
1 GCATATAG-AGTTCATTACCAGTCTAA
16007487 G
1 G
16007488 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATATAGAGTTCATTACCAGTCTAA
Found at i:16008110 original size:219 final size:220
Alignment explanation
Indices: 16007461--16008117 Score: 957
Period size: 218 Copynumber: 3.0 Consensus size: 220
16007451 ACCAGTGTAA
* * * * *
16007461 GCATATGAAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGCTGCGGCAGCACATGCTAGG
1 GCATACGAAGTTCGTTCCCAGTCTAAGATCGGATCAGACCAAGGGCTGCGGCAGCACATGTTGGG
* * * * *
16007526 CTCGGGCATGTGCTAGTGTCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCAGAGA
66 CTCGAGCATGTGCTAGTGCCACATTTTTCTTCGTTGGGGCACCATCACCGGAGCATCACCGGAGA
* * * * * *
16007591 GCCTCACTGGTGGCATTGGGGTTCC-GACGATCAGTGGGGCAGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGTGGCATTGGGGTTCCTG-CGATC-GAGGGGCCGGGGGGTGTACGCACATGATGTG
* *
16007655 TGATGGGTGCTGGTACTTGGCCCTTAG
194 CGATGGGTGCTGGTACTTAGCCCTTAG
* * ** *
16007682 GCATACGAAGTTCGTTCCCAGTCTAAGATCAGATCAGACCGA-CACTGCGACAGCACATGTTGGG
1 GCATACGAAGTTCGTTCCCAGTCTAAGATCGGATCAGACCAAGGGCTGCGGCAGCACATGTTGGG
*
16007746 CTCGAGCATGTGCTAGTGCCACATTTTTCTTCGTTGGGGCACCATCACCGGAGCATCGCCGGAGA
66 CTCGAGCATGTGCTAGTGCCACATTTTTCTTCGTTGGGGCACCATCACCGGAGCATCACCGGAGA
* *
16007811 ACCTGACCGGTGGCATTGGGGTTTCTGCGATCGAGGGGCC-GGGGGTGTACGCACATGATATGCG
131 ACCTGACCGGTGGCATTGGGGTTCCTGCGATCGAGGGGCCGGGGGGTGTACGCACATGATGTGCG
16007875 ATGGGTGCTGGTACTTAGCCCTTAG
196 ATGGGTGCTGGTACTTAGCCCTTAG
*
16007900 GCATACGAAGTTCGTTCCCAGTCTAAGATCGGA-CAAGACCAAGGGCTGCGGTAGCACATGTTGG
1 GCATACGAAGTTCGTTCCCAGTCTAAGATCGGATC-AGACCAAGGGCTGCGGCAGCACATGTTGG
*
16007964 GCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTTGGGGCACCATCACC-GAGCATCACCGGAG
65 GCTCGAGCATGTGCTAGTGCCACATTTTTCTTCGTTGGGGCACCATCACCGGAGCATCACCGGAG
* *
16008028 AACCTGACCAGTGGCATTGGGGTTCCTGCGATCTG-GGGGCCGGGGGGTGTACGCACTTGATGTG
130 AACCTGACCGGTGGCATTGGGGTTCCTGCGATC-GAGGGGCCGGGGGGTGTACGCACATGATGTG
*
16008092 CGATGGGTGCTAGTACTTAGCCCTTA
194 CGATGGGTGCTGGTACTTAGCCCTTA
16008118 TATTGGCCCT
Statistics
Matches: 392, Mismatches: 39, Indels: 12
0.88 0.09 0.03
Matches are distributed among these distances:
217 1 0.00
218 133 0.34
219 118 0.30
220 102 0.26
221 38 0.10
ACGTcount: A:0.19, C:0.25, G:0.32, T:0.24
Consensus pattern (220 bp):
GCATACGAAGTTCGTTCCCAGTCTAAGATCGGATCAGACCAAGGGCTGCGGCAGCACATGTTGGG
CTCGAGCATGTGCTAGTGCCACATTTTTCTTCGTTGGGGCACCATCACCGGAGCATCACCGGAGA
ACCTGACCGGTGGCATTGGGGTTCCTGCGATCGAGGGGCCGGGGGGTGTACGCACATGATGTGCG
ATGGGTGCTGGTACTTAGCCCTTAG
Found at i:16008460 original size:26 final size:26
Alignment explanation
Indices: 16008430--16008482 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16008420 GTTGACTTAG
*
16008430 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16008456 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16008482 G
1 G
16008483 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16011186 original size:26 final size:26
Alignment explanation
Indices: 16011156--16011208 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16011146 GTTAACTTAG
* *
16011156 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACAGAGTTCAGTCACAGTCTAA
*
16011182 GCATACAGAGTTCAGTCCCAGTCTAA
1 GCATACAGAGTTCAGTCACAGTCTAA
16011208 G
1 G
16011209 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCAGTCACAGTCTAA
Found at i:16011574 original size:907 final size:880
Alignment explanation
Indices: 16009399--16012708 Score: 3589
Period size: 871 Copynumber: 3.7 Consensus size: 880
16009389 TCCCAGTCTA
* * * ** *
16009399 AGCATACGGAGTTCATTCCCACTCTAAGATCAGATCGGAGTGAGGGTTGCGGCAGCACATGCTGC
1 AGCATAC-GAGTTCA-TCCCAGT-TAAGATCGGA-CAGACCGAGGGTTGCGGCAGCACATGCTGG
* * * * * * * *
16009464 ACTCGGGCATGTGCTAGTGCCGCATTTGTCTTCGTCGGGGCACCATCGTCGGAGCATC-GCCGGA
62 GCTCAGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCATCAGGA
* * * * *
16009528 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCTGGGGGGGTGTGCGCCCATGATG
127 GAACCTGATCGACGGCATTGGGGTTCCGGCGATC-GGGGGTC-CGGGGGGTGTGCGCACATGATG
* * *
16009593 TGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTTGAGAACTC
190 TGCGATGGGTGCTGGTACTTGG-CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
16009658 ACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
254 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
16009723 ATGGGGACACTTTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTT
319 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTTAGCTGAATTTTTT
* * * * * *
16009788 TGTGCATGCCAACAAAAATACCAGGATCATGTCTACCAAGTTAGGGGCCAAAGCTCCTTCCAAAA
384 TATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * * *
16009853 AAATTTTAAGAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCATC
449 AAATTTTAAAAAATCTCGAACCGAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * *
16009918 TCGCCATGAACCTTCACGTGAAGGCTTAAGGGGCCATTGTATGAATTTACAAGCCATAAAAATGG
514 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * **
16009983 CATTGGTATGCTGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATAACTTG
579 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA-CGCTTG
* * * * * * * * * ** * ***
16010048 CGCATCCCGTCTCTCTG-GCCGACGTAGTGCCCGCTCGCCTGCCCGCT-TGTTTCGTCAGT-TGG
643 CGCAACCCGTCTCTTTGAACAG-CATAGT-ACCG-T--CC-ACCCG-TGCGTTCCAACCGTCAAC
* * * *** * ** * **
16010110 CTTAGGCATACGGAGTTCATTCCCA-ACCTAAGATC-GAACTGGACCAAGGGTTGCGGTAGCAGG
701 CTT--GCATA-TGAGATCATTCCTAGA-CTAAGATCAG-ACCAAACCGAGGGTTGTAGCAGCACA
** * * * * ** * * *
16010173 ATCGGTAGCACGTAGAGGGGGACCCGGCCGATCTTCGGCTTGCGCATCCCGCCCCTCTGGGCGAC
761 ATAAGCAGCACGCAGAAGGGGACCCGACCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGC
* ** * * * *
16010238 TGAGCCCCCGCACGCTCGTTTCGTGGGTTGACTT-GGCATACGGAGTTCATT-C-
826 TAAGAGCCCGCACACTCGTTTCATGGCTTAACTTAGGCATACGGAGTTCATTCCT
** * *
16010290 --C---C-A----AT----G-TAAGATCGGATC-GAACCGAGGGTTGCACCAGCACATGCTAGGA
1 AGCATACGAGTTCATCCCAGTTAAGATCGGA-CAG-ACCGAGGGTTGCGGCAGCACATGCTGGGC
* *
16010339 TCAGGCATGTGCTGGTACCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCA-GAGA
64 TCAGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCATCAGGAGA
* ** * *
16010403 ACTTGATCGGTGGCATTGGGGTT-CGGCGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTGC
129 ACCTGATCGACGGCATTGGGGTTCCGGCGATC-GGGGGTCCGGGGGGTGTGCGCACATGATGTGC
* *
16010467 GATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCGCA
193 GATGGGTGCTGGTACTTGG-CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * * *
16010532 ACCCCTTAAAGAGAATTTGAGATTTTCCACGTTTTCTGCCAGTAGCCATTAAAGTGTCTGAAATG
257 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
16010597 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
322 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTTAGCTGAATTTTTTTAT
* * *
16010662 GCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTCTGGGGCCAAAAATCCTTCCGAAAAAA
387 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * *
16010727 GTTTAAAAAATCCCGAACCGAAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTG
452 TTTTAAAAAATCTCGAACCGAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
16010792 CCATGAAACTTCTCGTGAAGACTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
517 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
16010857 TGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACG-TTGTCAC
582 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGCTTG---C
* ** ** *
16010921 GGACTAAGCTTTCTC-TT-AACAAGCAATAG-ACCGTGCAGCACTTGAATGGGTGCTCCCAACCA
644 -G-C-AACCCGTCTCTTTGAAC-AGC-ATAGTACCGT-C--CACCCG--TGCGT--T-CCAACC-
* * *
16010983 AGTCAACCTT-CA-AT-AGATCGATAT-CT-GAAC-AA-AT-A-ACCATAAGCTATGGTTAGTCA
695 -GTCAACCTTGCATATGAGATC-AT-TCCTAG-ACTAAGATCAGACCA-AACCGAGGGTT-GT--
* *
16011039 CAAGCATTCACAATAAGACA-CAATAAGGCAGAAGGGGACCCGACCGATCCCCGGCTTGCACATC
752 --AGCA-GCACAATAAG-CAGC----ACGCAGAAGGGGACCCGACCGATCCCCGGCTTGCACATC
* * ** *
16011103 CCGTCCCTCTGGCCGGCTGAGAGCCCGCACGTTCGTTTCATGGGTTAACTTAGGCATACGGAGTT
809 CCGCCCCTCTGGCCGGCTAAGAGCCCGCACACTCGTTTCATGGCTTAACTTAGGCATACGGAGTT
16011168 CATTCACAGTCT
874 CATT--C---CT
16011180 AAGCATACAGAGTTCAGTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTG
1 -AGCATAC-GAGTTCA-TCCCAGT-TAAGATCGGA-CAGACCGAGGGTTGCGGCAGCACATGCTG
* * *
16011245 GGCTCAGGCATGTGCTGGTGTCGTATTTTTCTTCGTCGGGGCACCATCGCCGAAGCATC-CCAGG
61 GGCTCAGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCATCAGG
* *
16011309 AGAACCTGATCGACGGCTTTGGGGTTCCGGCGATCGGGGGTCCGGGGGGCGTGCGCACATGATGT
126 AGAACCTGATCGACGGCATTGGGGTTCCGGCGATCGGGGGTCCGGGGGGTGTGCGCACATGATGT
*
16011374 GCGATGGGTGCTGGTACTTGGCCTTATATTGG-CCTCTATCCCTCATCAAACCTCGAGAACTCAC
191 GCGATGGGTGCTGGTACTTGGCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
16011438 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
256 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
16011503 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTTAGCTGAATTTTTTTT
321 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTTAGCTGAATTTTTTTA
* * *
16011568 TGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAGA
386 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * * *
16011633 ATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATAAAAAATAAAAAAGGAGTCGTGTT
451 ATTTTAAAAAATCTCGAACCGAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
**
16011698 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATTCCA
516 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
16011763 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCGCCTACCACCCTATCGATCCATAGCTTGCG
581 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA-CGCTTGCG
* ** * * * * * ** *** *
16011828 CATCCCGTCTCTTTGGTCGGCGTAGTTCCCGTCCACCCGTTCGTTTCGTCCGTTGGCTTTGGCAT
645 CAACCCGTCTCTTTGAACAGCATAG-TACCGTCCACCCGTGCGTTCCAACCGTCAACCTT-GCAT
* * * ** *
16011893 ATGGAGTTCATTCCTAGTCTAAGATCAGACCAAACCGAGGGTTGTGGCAGCAGGATCAGCAGCAC
708 AT-GAGATCATTCCTAGACTAAGATCAGACCAAACCGAGGGTTGTAGCAGCACAATAAGCAGCAC
* * ** ** * *
16011958 GCAGAGGGGGACCCGATCGATCCTTGGCTTGTGCATCCTGCCCCTCTGGCTGGCTAAGAGCCCGC
772 GCAGAAGGGGACCCGACCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGCTAAGAGCCCGC
*
16012023 ATACTCGTTTCATGGCTTAACTTAGGCATACGGAGTTCATTCCT
837 ACACTCGTTTCATGGCTTAACTTAGGCATACGGAGTTCATTCCT
* * *
16012067 AGTC-TAC--G---AT--C-G---A-A-C--A-AAACTGAGGGTTACGGCAGCACATGCTGGGCT
1 AG-CATACGAGTTCATCCCAGTTAAGATCGGACAGACCGAGGGTTGCGGCAGCACATGCTGGGCT
*
16012115 C-GGCCATGTGCTGGTGCCGTATTTTTCTTCGTTGGGGCACCATCGCCGGAGCATCATC-GGAGA
65 CAGG-CATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCATCAGGAGA
* * *
16012178 ACCTGACCGACGGCATTAGGGTTCCGACGATCGGGGGTACCGGGGGGGTGTGCGCACATGATGTG
129 ACCTGATCGACGGCATTGGGGTTCCGGCGATCGGGGGT-CC-GGGGGGTGTGCGCACATGATGTG
*
16012243 CAATGGGTGCTGGTACTTGGCCGTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
192 CGATGGGTGCTGGTACTTGGCC-TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
16012308 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
256 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
16012373 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTATACTTCGAGTTCTTAGCTGAA-TTTTTTA
321 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTTAGCTGAATTTTTTTA
* ** **
16012437 TGCATGCCAACAAAAATATAAGGATCACGTCTATGAAGTTTTAGGCCAAAACTCCTTCCGAAAAA
386 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* *
16012502 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAGA-GGAAAACGAGTCGTCT
451 ATTTTAAAAAATCTCGAACCGAAAAAAGTTTCAAAAATCATGAAAA-ATAGAAAACGAGTCGTCT
*
16012566 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGC
515 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * ** *
16012631 ATTGGCACGTAGAAATATAAAGATGTGAGTAAACCCACCTACCACCCTATCGATCCACGGCTTAC
580 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC-GCTTGC
*
16012696 GCATCCCGTCTCT
644 GCAACCCGTCTCT
16012709 CTGGTCGGGG
Statistics
Matches: 2073, Mismatches: 251, Indels: 212
0.82 0.10 0.08
Matches are distributed among these distances:
865 2 0.00
866 117 0.06
867 3 0.00
868 44 0.02
869 261 0.13
870 154 0.07
871 440 0.21
872 28 0.01
873 115 0.06
874 13 0.01
875 14 0.01
876 5 0.00
877 7 0.00
878 6 0.00
879 5 0.00
880 5 0.00
882 75 0.04
883 18 0.01
884 1 0.00
886 6 0.00
887 3 0.00
889 2 0.00
890 1 0.00
892 93 0.04
893 1 0.00
895 7 0.00
896 8 0.00
897 8 0.00
898 5 0.00
899 5 0.00
900 10 0.00
901 4 0.00
902 14 0.01
903 14 0.01
904 6 0.00
905 6 0.00
906 1 0.00
907 382 0.18
908 13 0.01
909 162 0.08
910 9 0.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (880 bp):
AGCATACGAGTTCATCCCAGTTAAGATCGGACAGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
AGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCATCAGGAGAAC
CTGATCGACGGCATTGGGGTTCCGGCGATCGGGGGTCCGGGGGGTGTGCGCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTTAGCTGAATTTTTTTATGCAT
GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
AAAAAATCTCGAACCGAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGCTTGCGCAACCC
GTCTCTTTGAACAGCATAGTACCGTCCACCCGTGCGTTCCAACCGTCAACCTTGCATATGAGATC
ATTCCTAGACTAAGATCAGACCAAACCGAGGGTTGTAGCAGCACAATAAGCAGCACGCAGAAGGG
GACCCGACCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGCTAAGAGCCCGCACACTCGTT
TCATGGCTTAACTTAGGCATACGGAGTTCATTCCT
Found at i:16013963 original size:26 final size:26
Alignment explanation
Indices: 16013926--16013978 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16013916 GTTGACTTAG
*
16013926 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16013952 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16013978 G
1 G
16013979 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16014858 original size:26 final size:26
Alignment explanation
Indices: 16014828--16014880 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16014818 GTTGACTTAG
16014828 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16014854 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16014880 G
1 G
16014881 ATCAGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16015477 original size:905 final size:902
Alignment explanation
Indices: 16013757--16015542 Score: 2703
Period size: 905 Copynumber: 2.0 Consensus size: 902
16013747 CATTTTGTCA
* *
16013757 GTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAAGGTTGTGGCAGC
1 GTTGGCCTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAAGGTTATGGCAGC
* * * * *
16013822 AAGATTGGCAGCACACAGAGGGGGACCTGACCAATCCTCGGCTTGTGCATCCCGCCCCTCTGGCC
66 AAGATCGACAGCACACAGAGGGGGACCTGACCAATCCTCGGATTGCGCATCCCGCCCCTATGGCC
*
16013887 GACTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
131 GACTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
16013952 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCAATGGTTGCGGCAGCACATGCTGGG
196 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGGCAGCACATGCTGGG
* * * **
16014017 CTCGAGCATGTGCTGGTGCCGTATTTTTCTTTGCCGGGGCACCATCGCCGAAGCATCGTCGGAGA
261 CTCGAGCATATGCTGGTGCCGCATTTTTCTTTCCCGGGGCACCATCGCCGAAGCATCACCGGAGA
* * ** * *
16014082 TACTGACCGGCGGTATTGGGGTTCCGGTGATCGAGGGGGTGGGGGGTGTGCGCACATAATGTGCG
326 TACTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCGGGGGGTGTGCGCACATAATGTGCA
* *
16014147 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCAAGAACTCACAC
391 ATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
16014212 CCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATGG
456 CCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATGG
*
16014277 AGACACTTTTTTCAAATCATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
521 AGACACTTTTTTCAAATCATCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* *
16014342 CATGCCAACAAAAACACAAGGATCACGACTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
586 CATGCCAACAAAAACACAAGCATCACGACTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAAT
* ** *
16014407 TTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
651 TTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGC
** *
16014472 CAAGAAACTGAACATGAAGGCTTAAGGGACCATTGTATGAATTTGTAAGCCATAAAAATGGCATT
716 CAAGAAACTGAACATGAAGGCTTAAGGGACCATTGTATGAATTTACAACCCATAAAAATGGCATT
* ** * * *
16014537 GGCATGCAGAAATATGAAGATGTGCCAAAACCCACCTTCCCCCCTATCGATCCACGGCTTGCACA
781 AGCACACAAAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTTGCACA
* *
16014602 TCCCGTCTCTCTGGCCGGCACAGTGCCCGGCCGCCCGGCCGCCCGTTCGTTTCATCG
846 TCCCATCTCTCTGGCCGGCACAGTGCCCGCCCGCCCGGCCGCCCGTTCGTTTCATCG
* * * * *
16014659 GTTGGCCTAGGCATACGGAGTTCATTCCTAGTGTAAGATCCGACTGGATCGAGGGTTATGGCAGC
1 GTTGGCCTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAAGGTTATGGCAGC
** ** * * *
16014724 AAGATCGACAGCATGCAGAGGGGGACCTGTTCGATCCTCGGATTGCGCATCCTGCCCCTATGGTC
66 AAGATCGACAGCACACAGAGGGGGACCTGACCAATCCTCGGATTGCGCATCCCGCCCCTATGGCC
* *
16014789 GGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
131 GACTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
16014854 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTATGGCAGCACATGCTGGG
196 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGGCAGCACATGCTGGG
* * *
16014919 CTCGAGCATATGCTGGTGCCGCATTTTTC-TTCCTCGGGGCACCATCGTCGGAGCATCACCGTAG
261 CTCGAGCATATGCTGGTGCCGCATTTTTCTTTCC-CGGGGCACCATCGCCGAAGCATCACCGGAG
* *
16014983 A-ACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCCGAGGGGGTTGTGCGCATATGAT
325 ATA-CTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGG-CG-GGGGG-TGTGCGCACATAAT
**
16015047 GTGCAATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGGAGAACT
386 GTGCAATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
* * *
16015112 CACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
451 CACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGA
* ** *
16015177 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTATCTGAATTTTT
516 AATGGAGACACTTTTTTCAAATCATCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTT
* * * *
16015242 TTGTGCATGCCAACAAAAATACATGCATCACGTCTACCAAGTTTGTGGCCAAAAATCCTTCCGAA
581 TTGTGCATGCCAACAAAAACACAAGCATCACGACTACCAAGTTTGGGGCCAAAAATCCTTCCGAA
* *
16015307 AAAATTTTAAAAAATCCCAAACCGTAAACAGTTTCAAAAATCGTGACAAATAGAAAACGAGTCAT
646 AAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCAT
* * ** *
16015372 CTTGCGATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAACCCATAAAAATG
711 CTTGCCAAGAAACTGAACATGAAGGCTTAAGGGACCATTGTATGAATTTACAACCCATAAAAATG
* * *
16015437 GCATTAGCACACAAAAATATGAAGATTTGCCAAAACCCACCTACCACCCTATCGATTCACTGCTT
776 GCATTAGCACACAAAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTT
* **
16015502 GCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC
841 GCACATCCCATCTCTCTGGCCGGCACAGTGCCCGCCCGCCC
16015543 ACTCGTTTCG
Statistics
Matches: 789, Mismatches: 90, Indels: 7
0.89 0.10 0.01
Matches are distributed among these distances:
901 4 0.01
902 318 0.40
903 1 0.00
904 5 0.01
905 461 0.58
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (902 bp):
GTTGGCCTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAAGGTTATGGCAGC
AAGATCGACAGCACACAGAGGGGGACCTGACCAATCCTCGGATTGCGCATCCCGCCCCTATGGCC
GACTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGGCAGCACATGCTGGG
CTCGAGCATATGCTGGTGCCGCATTTTTCTTTCCCGGGGCACCATCGCCGAAGCATCACCGGAGA
TACTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCGGGGGGTGTGCGCACATAATGTGCA
ATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
CCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATGG
AGACACTTTTTTCAAATCATCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAACACAAGCATCACGACTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAAT
TTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGC
CAAGAAACTGAACATGAAGGCTTAAGGGACCATTGTATGAATTTACAACCCATAAAAATGGCATT
AGCACACAAAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTTGCACA
TCCCATCTCTCTGGCCGGCACAGTGCCCGCCCGCCCGGCCGCCCGTTCGTTTCATCG
Found at i:16015605 original size:26 final size:26
Alignment explanation
Indices: 16015566--16015618 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16015556 GTTGGCTTAG
* *
16015566 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
16015592 GCATACGAATTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16015618 G
1 G
16015619 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16016212 original size:737 final size:737
Alignment explanation
Indices: 16014796--16016259 Score: 2225
Period size: 737 Copynumber: 2.0 Consensus size: 737
16014786 GTCGGCTGAG
*
16014796 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
1 CGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* *
16014861 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTATGGCAGCACATGCTGGGCTCGAGC
66 AAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTATGACAGCACATGCTGGGCTCGAGC
*
16014926 ATATGCTGGTGCCGCATTTTTCTTCCTCGGGGCACCATCGTCGGAGCATCACCGTAGAACCTGAC
131 ATATGCTGGTGCCGCATTTTTCTTCCTCGGGGCACCATCCTCGGAGCATCACCGTAGAACCTGAC
* * * *
16014991 CGACGGCATTGGGGTTCCGACGATCGAGGGGGCCGAGGGGGTTGTGCGCATATGATGTGCAATGG
196 CGACGGCATTGGGGTTCCAACGATCGAGGGGGCCGAGGGGGGTGTGCGCACAGGATGTGCAATGG
* * *
16015056 GTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGGAGAACTCACACCCCC
261 GTACTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATAAAACCTCGAGAACTCACACCCCC
* * * *
16015121 TTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
326 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGGAGCCATTAAAATGTCTGAAATGGGGAC
* *
16015186 ACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTATCTGAATTTTTTTGTGCATG
391 ACATTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * *
16015251 CCAACAAAAATACATGCATCACGTCTACCAAGTTTGTGGCCAAAAATCCTTCCGAAAAAATTTTA
456 CCAAAAAAAATACAAGCATCACGTCTACCAAGTTTGTGGCCAAAAATCCTTCCAAAAAAATTTTA
* * *
16015316 AAAAATCCCAAACCGTAAACAGTTTCAAAAATCGTGACAAATAGAAAACGAGTCATCTTGCGATG
521 AAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATG
16015381 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAACCCATAAAAATGGCATTAGCA
586 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAACCCATAAAAATGGCATTAGCA
* * *
16015446 CACAAAAATATGAAGATTTGCCAAAACCCACCTACCACCCTATCGATTCACTGCTTGCGCATCCC
651 CACAAAAATATGAAGATGTGCCAAAACCCA-CTACCACCCTATCGATCCACGGCTTGCGCATCCC
16015511 ATCTCTCTGGCCGGCGTAGTGCC
715 ATCTCTCTGGCCGGCGTAGTGCC
* * * * *
16015534 CGCCCGCCCACTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCTCAGTCTAAGCATACG
1 CGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * * * * *
16015599 AATTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGACAGCACATGTTGGGCTTGGGC
66 AAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTATGACAGCACATGCTGGGCTCGAGC
* **
16015664 ATATGCTGGTGCCGCATTTTTCTTCAC-CGGGGCACCATCACT-GGAGTATTGCCAG-AGAACCT
131 ATATGCTGGTGCCGCATTTTTCTTC-CTCGGGGCACCATC-CTCGGAGCATCACC-GTAGAACCT
** * * *
16015726 GACCGGTGGCATTGGGGTTTCAACGATCGGGGGGGCCG-GGGGGGTGTGCGCACAGGATGTGCGA
193 GACCGACGGCATTGGGGTTCCAACGATCGAGGGGGCCGAGGGGGGTGTGCGCACAGGATGTGCAA
*
16015790 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATAAAACCTCGAGAACTCACACC
258 TGGGTACTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATAAAACCTCGAGAACTCACACC
* * * *
16015855 CCCTTAATGAGCATTTGAGATTTTACAGGTTTTCTATCAGGGGCCATTAAAATGTCTGAAATGGG
323 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGGAGCCATTAAAATGTCTGAAATGGG
* *
16015920 GACACATTTTTCAAATGGTCACAGAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
388 GACACATTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * *
16015985 ATGCCAAAAAAAATACAAGGATCATGTTTACCAAGTTTGTGGCCAAAACTCCTTCCAAAAAAATT
453 ATGCCAAAAAAAATACAAGCATCACGTCTACCAAGTTTGTGGCCAAAAATCCTTCCAAAAAAATT
*
16016050 TTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
518 TTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCC
* * * * * *
16016115 ATGAAACTTCACTTGAAGGCTTACGTGACCATTGTATGAATTTATAAGCCATAAAAATGGCATTG
583 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAACCCATAAAAATGGCATTA
***** *
16016180 GCATGTGGAAATATGAAGATGTGCCTAAACCCACTACCACCCTATCGATCCACGGCTTGCGCATC
648 GCACACAAAAATATGAAGATGTGCCAAAACCCACTACCACCCTATCGATCCACGGCTTGCGCATC
*
16016245 CCGTCTCTCTGGCCG
713 CCATCTCTCTGGCCG
16016260 ACACAGTTCC
Statistics
Matches: 652, Mismatches: 71, Indels: 8
0.89 0.10 0.01
Matches are distributed among these distances:
736 44 0.07
737 405 0.62
738 200 0.31
739 3 0.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (737 bp):
CGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
AAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTATGACAGCACATGCTGGGCTCGAGC
ATATGCTGGTGCCGCATTTTTCTTCCTCGGGGCACCATCCTCGGAGCATCACCGTAGAACCTGAC
CGACGGCATTGGGGTTCCAACGATCGAGGGGGCCGAGGGGGGTGTGCGCACAGGATGTGCAATGG
GTACTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATAAAACCTCGAGAACTCACACCCCC
TTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGGAGCCATTAAAATGTCTGAAATGGGGAC
ACATTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
CCAAAAAAAATACAAGCATCACGTCTACCAAGTTTGTGGCCAAAAATCCTTCCAAAAAAATTTTA
AAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATG
AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAACCCATAAAAATGGCATTAGCA
CACAAAAATATGAAGATGTGCCAAAACCCACTACCACCCTATCGATCCACGGCTTGCGCATCCCA
TCTCTCTGGCCGGCGTAGTGCC
Found at i:16016502 original size:27 final size:28
Alignment explanation
Indices: 16016471--16016526 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 28
16016461 GGTCGACTAG
16016471 GCATA-GCGGAGTTCATTCCCAGTCTAA
1 GCATACGCGGAGTTCATTCCCAGTCTAA
*
16016498 GCATACGGGGAGTTCATTCCCAGTCTAA
1 GCATACGCGGAGTTCATTCCCAGTCTAA
16016526 G
1 G
16016527 ATCAGGACCA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
27 5 0.19
28 22 0.81
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (28 bp):
GCATACGCGGAGTTCATTCCCAGTCTAA
Found at i:16017763 original size:867 final size:881
Alignment explanation
Indices: 16016507--16018125 Score: 2214
Period size: 869 Copynumber: 1.8 Consensus size: 881
16016497 AGCATACGGG
*
16016507 GAGTTCATTCCCAGTCTAAGATCAGGACCAGCCCACCAAGGGTTGGCAGCACAATGCTGGGCTCG
1 GAGTTCATTCCCAGTCTAAGATCAGGACCAG--CACCAAGGGTTGACAGCACAATGCTGGGCTCG
* * *
16016572 AGCATATGGTGGTGCTGCATTTCTTCGTCGAGGCCACCATCGCCGGAGCATCACCAGGAGAACCT
64 AGCATATGCTGGCGCTGCATTTCTTCGTCGAGGCCACCATCACCGGAGCATCACCAGGAGAACCT
* *
16016637 GACCGACGGCATGTGGTTCCGAACGATCGGGGGGCCTGGGCCGGGTTGGTGCGCACAATGATGTG
129 GACCGACGGCATGTGGTTCCGAACGATCGGGGGGCCTGGG-CGGGGTGCTGCGCACAATGATGTG
16016702 CGATGGGTGCTGTACCTTGGCCCTTATATGGCCCCTATCCCTCAATCAAACCCACCAGGGAGAAC
193 CGATGGGTGCTGTACCTTGGCCCTTATATGGCCCCTATCCCTCAATCAAA--CACCAGGGAGAAC
* *
16016767 TCACACCCCCTTAAGAGGATTTGAGGAATTTTAGGTGGGCTGCCAGTAGGCAATTTAAACAGTGT
256 TCACACACCCTTAAGAGCATTTGAGGAATTTTAGGTGGGCTGCCAGTAGGCAATTTAAACAGTGT
16016832 CTGAAGGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATT
321 CTGAAGGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATT
* * * *
16016897 TTTTTGTGCATGCCAAAAAAAATACAAGGATCACG-CTACCAAGTTTGGGGCTAAAACTCTTTCC
386 TTTTTGTGCATGCCAAAAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCCTTAC
* * * ** *
16016961 GAAAAAATTTTAAAAAATCCCGAA-CTGCAAAAGGTTTTGAAAATCGTGAAAAA-ATAAAACGAG
451 AAAAAAATTTTAAAAAATCCCAAATC-GCAAAAAGTTTCAAAAATCGTGAAAAAGAGAAAACGAG
** * *
16017024 TTGTCTTGCCTTGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAA
515 TCATCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACAATTGTATGAATTTACAAGCCATAAA
*** *
16017089 AATGGCATTAGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCAATCGATCCACA
580 AATGGCATTAGCACACAGAAATATGAAGATGTCCCTAAACCCACCTACCACCCAATCGATCCACA
* * *
16017154 GCTTACGCATCCCGTCTCTCTGTCTGGCGTAGT-GCCCACCCG-C-CCGCTTGTTTCATCAGTTG
645 GCTTACGCATCCCGTCTCTCTGGCCGGCGTAGTCGCCCACCCGCCGCCGCTCGTTTCATCAGTTG
*
16017216 GCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATTACACCAGACCGAGGGTTGCAGCAGCAGGA
710 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTACACCAGACCGAGGGTTGCAGCAGCAGGA
16017281 TCGGCAGCATGCAGAGGGTGACCCGACCGACCCCCGGCATGCCCATCCTGCCCCTTTGGTCGGTT
775 TCGGCAGCATGCAGAGGGTGACCCGACCGACCCCCGGCATGCCCATCCTGCCCCTTTGGTCGGTT
16017346 GAGTGCCCGCACGCTCGTTTCGTGGTTTGACTTAGGCATACC
840 GAGTGCCCGCACGCTCGTTTCGTGGTTTGACTTAGGCATACC
*
16017388 GAGTTCATTCCCAGTCTAAGATC-GGACCAG-ACCGAGGGTTACGACAGCAC-ATGCTGGGCTCG
1 GAGTTCATTCCCAGTCTAAGATCAGGACCAGCACCAAGGGTT--GACAGCACAATGCTGGGCTCG
* * * * * **
16017450 GGCATGTGCTGGCGCTGCATTTTTCTTCGTTG-GGGCACCATCATCGGAGCATCGTC-GGAGAAC
64 AGCATATGCTGGCGCTGCA--TTTCTTCGTCGAGGCCACCATCACCGGAGCATCACCAGGAGAAC
**
16017513 CTGACCGACGGCAT-TAGGGTTCCG-GTGATCGGGGGGCC-GGG-GGGGT-CTGCGCAC-ATGAT
127 CTGACCGACGGCATGT--GGTTCCGAACGATCGGGGGGCCTGGGCGGGGTGCTGCGCACAATGAT
* * *
16017572 GTGTGATGGGTGCTGGTA-CTTGGCCCTTATATTGGCCCCTTATCCCTC-AT-TAA-ACCA-TGA
190 GTGCGATGGGTGCT-GTACCTTGGCCCTTATA-TGGCCCC-TATCCCTCAATCAAACACCAGGGA
* ** *
16017632 GAACTCACTCACCCTTAAGGAGCATTTGA-G-ATTTTACAGGTTTGCTGCCAGTA-GCCA-TT-A
252 GAACTCACACACCCTTAA-GAGCATTTGAGGAATTTT--AGGTGGGCTGCCAGTAGGCAATTTAA
* * *
16017692 A-TGTGTCTGAAATGGGGACACTTTTTTCAAGTGGTCACAAAATCTTGTACACTTCGAGTTTTTA
314 ACAGTGTCTG-AAGGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * *
16017756 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAGA
378 ACTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAA
* * * *
16017821 CTCCTTATAAAAAAATTTTAAGAAATTCCAAATCGTAAAAAGTTTCAAAAATCGTGAAAAAGAGA
443 CTCCTTACAAAAAAATTTTAAAAAATCCCAAATCGCAAAAAGTTTCAAAAATCGTGAAAAAGAGA
* *
16017886 AAACGAGTCATCTTGCCATGCAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAG
508 AAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACAATTGTATGAATTTACAAG
* * *
16017951 CCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATTG
573 CCATAAAAATGGCATTAGCACACAGAAATATGAAGATGTCCCTAAACCCACCTACCACCCAATCG
* * * *
16018016 ATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGGTGTAGTGCCCGCCCACCCGCCCGTCCGCTCG
638 ATCCACAGCTTACGCATCCCGTCTCTCTGGCCGGCGTAGT---CGCCCACCCG-CCG-CCGCTCG
* *
16018081 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
698 TTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
16018126 CATATGGAGT
Statistics
Matches: 646, Mismatches: 68, Indels: 52
0.84 0.09 0.07
Matches are distributed among these distances:
866 7 0.01
867 94 0.15
868 74 0.11
869 176 0.27
870 27 0.04
873 42 0.07
874 19 0.03
875 13 0.02
877 61 0.09
878 60 0.09
879 33 0.05
880 17 0.03
881 23 0.04
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (881 bp):
GAGTTCATTCCCAGTCTAAGATCAGGACCAGCACCAAGGGTTGACAGCACAATGCTGGGCTCGAG
CATATGCTGGCGCTGCATTTCTTCGTCGAGGCCACCATCACCGGAGCATCACCAGGAGAACCTGA
CCGACGGCATGTGGTTCCGAACGATCGGGGGGCCTGGGCGGGGTGCTGCGCACAATGATGTGCGA
TGGGTGCTGTACCTTGGCCCTTATATGGCCCCTATCCCTCAATCAAACACCAGGGAGAACTCACA
CACCCTTAAGAGCATTTGAGGAATTTTAGGTGGGCTGCCAGTAGGCAATTTAAACAGTGTCTGAA
GGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATTTTTTT
GTGCATGCCAAAAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCCTTACAAAAA
AATTTTAAAAAATCCCAAATCGCAAAAAGTTTCAAAAATCGTGAAAAAGAGAAAACGAGTCATCT
TGCCATGAAACTTCACGTGAAGGCTTAAAGGACAATTGTATGAATTTACAAGCCATAAAAATGGC
ATTAGCACACAGAAATATGAAGATGTCCCTAAACCCACCTACCACCCAATCGATCCACAGCTTAC
GCATCCCGTCTCTCTGGCCGGCGTAGTCGCCCACCCGCCGCCGCTCGTTTCATCAGTTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATTACACCAGACCGAGGGTTGCAGCAGCAGGATCGGCA
GCATGCAGAGGGTGACCCGACCGACCCCCGGCATGCCCATCCTGCCCCTTTGGTCGGTTGAGTGC
CCGCACGCTCGTTTCGTGGTTTGACTTAGGCATACC
Found at i:16018135 original size:26 final size:26
Alignment explanation
Indices: 16018099--16018151 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16018089 GTTGGCTTAG
16018099 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16018125 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16018151 G
1 G
16018152 ATCGGATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16018770 original size:746 final size:744
Alignment explanation
Indices: 16017388--16018871 Score: 2497
Period size: 746 Copynumber: 2.0 Consensus size: 744
16017378 TAGGCATACC
16017388 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGC
** **** *
16017453 ATGTGCTGGCGCTGCATTTTTCTTCGTTGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGAC
66 ATGTGCTGGCGCCACATTTTTCTTCACCAGGGCACCATCACCGGAGCATCGTCGGAGAACCTGAC
** * **
16017518 CGACGGCATTAGGGTTCCGGTGATCGGGGGGCCGGGGGGGTCTGCGCACATGATGTGTGATGGGT
131 CGACGGCATTAGGGTTCCGACGATCGGGGGGCCGGGAGGGTCTGCGCACATGATGTGCAATGGGT
* * * *
16017583 GCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATTAAACCATGAGAACTCACTCACCCTT
196 GCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCATGAGAACTCACACACCCTT
* *
16017648 AAGGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAATGTGTCTGAAATGGGGACAC
261 AAGGAGCATTTGAGAATTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
*
16017713 TTTTTTCAAGTGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
326 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
16017778 AACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAGACTCCTTATAAAAAAATTTTAAG
391 AACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAGACTCCTTATAAAAAAATTTTAAG
16017843 AAATTCCAAATCGTAAAAAGTTTCAAAAATCGTGAAAAAGAGAAAACGAGTCATCTTGCCATGCA
456 AAATTCCAAATCGTAAAAAGTTTCAAAAATCGTGAAAAAGAGAAAACGAGTCATCTTGCCATGCA
16017908 ACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA
521 ACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA
* *
16017973 CAGAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGCATCTCGT
586 CAGAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATCGATCCACGGCTGGCGCATCTCGT
* * *
16018038 CTCTCTGGCCGGTGTAGTGCCCGCCCACCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
651 CTCTCTAGCCGGTGTAGTGCCCGCCCACCCGCCCATCCGCTCGTTTCATCGGTTGGCTTAGGCAT
16018103 ACGGAGTTCATTCCCAGTCTAAGCATATG
716 ACGGAGTTCATTCCCAGTCTAAGCATATG
* * ** *
16018132 GAGTTCATTCCCAGTCTAAGATCGGATC-GAATCGAGGGTTGTGATAGCACATGCTGGGCTCGGG
1 GAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTACGACAGCACATGCTGGGCTCGGG
* * *
16018196 CATGTGCTGGTGCCACATTTTTCTTCACCAGGGCGCCATCGCCGGAGCATCGTCGGAGAACCTGA
65 CATGTGCTGGCGCCACATTTTTCTTCACCAGGGCACCATCACCGGAGCATCGTCGGAGAACCTGA
* * * *
16018261 CCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGAGGGTGTGCGTACATGATGTGCAATG
130 CCGACGGCATTAGGGTTCCGACGATC-GGGGGGCC-GGGAGGGTCTGCGCACATGATGTGCAATG
* * *
16018326 GGTGCTGGTTCTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCC
193 GGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCATGAGAACTCACACACC
* *
16018391 CTTATA-GAGCATTTGAGAATTTACATGTTTGCTGCCAGTATG-CATTAAAGTGTCTGTAATGGG
258 CTTA-AGGAGCATTTGAGAATTTACAGGTTTGCTGCCAGTA-GCCATTAAAGTGTCTGAAATGGG
16018454 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
321 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
*
16018519 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAGACTCCTTATAAAAAAATT
386 ATGCCAACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAGACTCCTTATAAAAAAATT
16018584 TTAAGAAATTCCAAATCGTAAAAAGTTTCAAAAATCGTGAAAAAGAGAAAACGAGTCATCTTGCC
451 TTAAGAAATTCCAAATCGTAAAAAGTTTCAAAAATCGTGAAAAAGAGAAAACGAGTCATCTTGCC
16018649 ATGCAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCATTG
516 ATGCAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCATTG
*
16018714 GCACATAGAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATCGATCCACGGCTGGCGCAT
581 GCACACAGAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATCGATCCACGGCTGGCGCAT
*
16018779 CTCGTCTCTCTAGCCGGTGTAGTGTCCGCCCACCCGCCCATCCGCTCGTTTCATCGGTTGGCTTA
646 CTCGTCTCTCTAGCCGGTGTAGTGCCCGCCCACCCGCCCATCCGCTCGTTTCATCGGTTGGCTTA
*
16018844 GGCATACGGAGTTCATTCCTAGTCTAAG
711 GGCATACGGAGTTCATTCCCAGTCTAAG
16018872 ATCAGATCGG
Statistics
Matches: 690, Mismatches: 45, Indels: 8
0.93 0.06 0.01
Matches are distributed among these distances:
743 1 0.00
744 134 0.19
745 8 0.01
746 545 0.79
747 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (744 bp):
GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGC
ATGTGCTGGCGCCACATTTTTCTTCACCAGGGCACCATCACCGGAGCATCGTCGGAGAACCTGAC
CGACGGCATTAGGGTTCCGACGATCGGGGGGCCGGGAGGGTCTGCGCACATGATGTGCAATGGGT
GCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCATGAGAACTCACACACCCTT
AAGGAGCATTTGAGAATTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
AACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAGACTCCTTATAAAAAAATTTTAAG
AAATTCCAAATCGTAAAAAGTTTCAAAAATCGTGAAAAAGAGAAAACGAGTCATCTTGCCATGCA
ACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA
CAGAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATCGATCCACGGCTGGCGCATCTCGT
CTCTCTAGCCGGTGTAGTGCCCGCCCACCCGCCCATCCGCTCGTTTCATCGGTTGGCTTAGGCAT
ACGGAGTTCATTCCCAGTCTAAGCATATG
Found at i:16019034 original size:26 final size:26
Alignment explanation
Indices: 16019004--16019055 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
16018994 TTGACTTAGC
16019004 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
*
16019030 CATACGGAGTTCATTCCCAGTGTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
16019056 ATTGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:16020780 original size:26 final size:26
Alignment explanation
Indices: 16020738--16020790 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
16020728 GTTGACATAG
*
16020738 GCATATGAAGTATATTCCCAGTCTAA
1 GCATATGAAGTATATTCCCAATCTAA
* *
16020764 GCATATGGAGT-TCATTCCTAATCTAA
1 GCATATGAAGTAT-ATTCCCAATCTAA
16020790 G
1 G
16020791 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATATGAAGTATATTCCCAATCTAA
Found at i:16021669 original size:26 final size:26
Alignment explanation
Indices: 16021633--16021685 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16021623 GTTGACTCAG
* *
16021633 GCATACGGAGTTGATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16021659 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16021685 G
1 G
16021686 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16022041 original size:897 final size:880
Alignment explanation
Indices: 16018096--16023156 Score: 5529
Period size: 892 Copynumber: 5.8 Consensus size: 880
16018086 TCGGTTGGCT
* * *
16018096 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGATC-
1 TAGGCATATGGAGTT-ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCA
* * ** * *
16018160 GAATCGAGGGTTGTGATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACC
65 G-ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATC
* * *
16018225 AGGGCGCCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGG
129 GGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GG
* * * * *
16018290 GGGGCCAGGGAGGGTGTGCGTACATGATGTGCAATGGGTGCTGGTTCTTGGCCCTTATATTAGCC
193 GGGGCCAGGG-GGGTGTGCGCACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* * * *
16018355 CCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTATAGAGCATTTGAGAATTTACATGTT
257 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
*
16018420 TGCTGCCAGTATG-CATTAAAGTGTCTGTAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
322 TGCTGCCAGTA-GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
*
16018484 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
386 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTA
* ** * ** * *
16018549 CCAAGTTTGGGGCCAAGACTCCTT-ATAAAAAAATTTTAAGAAAT-TCCAAATCGTAAAAAGTTT
451 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAATTTTAAAAAATCT-TGAACCGCAAAAAGTTT
* * * *
16018612 CAAAAATCGTGAAAAAGAGAAAACGAGTCATCTTGCCATGCAACTTCACGTGAAGGCTTAAGGGA
515 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* ** *
16018677 CAATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTCCCTAA
580 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAA
* * *
16018742 ACCCACCTACCACCCTATCGATCCACGGCTGGCGCA-TCTCGTCTCTCTAGCCGGTGTAGTGTCC
645 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATTC-CATCTCTCTGGCCGGTGT--TGT--
* * *
16018806 GCCCACCCGCCCATCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAA
705 GCCCGCCCG--C--CCGCTC-TTTCGTC-GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * * * * *
16018871 GATCAGATCGGACCAAGGGTTGCTGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATC
764 GATCAGACCGGACTGA-GGTTG--GTAGTAGG-T-GGTAGCACACAGAGCGGGACCCGATCGATC
* *
16018936 CTCAGCTTGCGCATCTGCC-CCCC-TGGCCTGCTGAGTGCCCGCACGCTCATTTCATGGCTTGAC
824 CTC-GCTTGCGCATC--CCGCCCCAT-GCC-GGTGAG-GCCCGCACGCT--TTTCATGGGTTGAC
* * * * *
16018999 TTAGCCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATTGGACT
1 -TAGGCATATGGAGTT-ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * * * *
16019064 GGACCGAGGGTTGCGGCAGCACTTGCTGGGCTCGGGCATGTGCTGGAGCCGTATTTTTCTTCGTC
64 AGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATC
* * **
16019129 GGGG-A--A----C----CATCGCCGGAGAACCTGACCGACGACATTGGGGTTCCGATAATCGGG
129 GGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGG
* * * *
16019183 GGGGC-GGGGGGTGTGTGCACATGATATGCGATGGGTGCTGGTACTTGGCCCGTATATTGGCCCA
194 GGGCCAGGGGGGTGTGCGCACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
*
16019247 CAATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGTA-CATTTGAGATTTTACAGGTTT
259 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG-AGCATTTGAGATTTTACAGGTTT
* * * *
16019311 GCTACCAGTAGCTATTAAAGTATTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
323 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * * * * *
16019376 ACACTTTGAGTTTTTAGCTGAATTGTTTTGTGCATACCAACAAAAATACAAGGATCACATCTATC
388 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACC
* * *
16019441 AAGTTTGGGGCGAAAACTCCTTTCG-AAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAA
453 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTCAA
* * * *
16019505 AAATCATGAAAAATAGAAAACGAGTCATCTTGCCATG--A----ACGTGAAGTCTCAAAGGACCA
518 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* * * *
16019564 TTGTATGAATTTACAAGCCATAAAAATGGCTTTGGCATGCAGAAATATGAAGATATGCCTAAACG
583 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACC
* * * * * * * * * * * *
16019629 CTCCTACCACCCTATAGATTCACGGCTTGCGCATCCCATCTTTTTCGTCGGCGTAGTGCTCGTCC
648 CACCTACCACCCTATCGATCCACGGCTTGCGCATTCCATCTCTCTGGCCGGTGTTGTGCCCGCCC
* * * * **
16019694 GCTCG---TTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATTGGACCGGAC
713 GCCCGCTCTTTCGTC-GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC
* * * * ** * ** * *
16019756 TAAGGGTTGCAATAGCAGGATCGGCAGCACGTAGAGGGGGACCCGGCCGATCCCTGGCTTGTGCA
777 TGA-GGTTG--GTAGTAGG-T-GGTAGCACACAGAGCGGGACCCGATCGAT-CCTCGCTTGCGCA
* * * *
16019821 TCCTGCCCCTTTGGCAGACTGAGCGCCCGCACGC---TC----GTT---
836 TCCCGCCCC-AT-GCCG-GTGAG-GCCCGCACGCTTTTCATGGGTTGAC
* * * *
16019860 T-----TGTGG-GTTGA----C--TC-AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGTCCG
1 TAGGCATATGGAGTT-ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCA
* * * * *
16019912 GATCGAAGGTTGCGACA-CACATGCTGAGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCG
65 GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCG
* * * * * ** * *
16019976 GGCCACGATCGTCGAAGAATCGTTGGAGAACCTGACCGACGGCAATGGGGTTCCGACGATCGGGG
130 GGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGG
*
16020041 GGCCAGGGGGGTG-GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
195 GGCCAGGGGGGTGTGCGCACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
*
16020105 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGC
260 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
*
16020170 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACGAAATCTTGTAC
325 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * *
16020235 ACTTCAAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAAATACAAGGATCATGTCTA-CA
390 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AAAAAAAATACAAGGATCACGTCTACCA
*
16020299 AGTTTGGGGCCAAAACTCCTTCC-AAAAAAATTTTAAAAAAT-TTCAACCGCAAAAAGTTT-AGA
454 AGTTTGGGGCCAAAACTCCTTCCGAAAAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTCA-A
*
16020361 AAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
518 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* * * **
16020426 TTGTATGAATTTAGAAGCCATAAGAATGGCATTGGCACACAGAAATATGAAGATGCACCTAAACC
583 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACC
* * * * *
16020491 CACCTACCACCCTATCGATCCACAGCTTGCGC-TTGCCATCTCTTTGGTCGGCGTAGT----GCC
648 CACCTACCACCCTATCGATCCACGGCTTGCGCATT-CCATCTCTCTGGCCGGTGTTGTGCCCGCC
* * *
16020551 CGACCGCTCATTTCATCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGG
712 CGCCCGCTC-TTTCGTC-GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
* * * * * * *
16020616 ATTGAAGGTTGTGGCAGCAGGATTGGCAGAACACAGAGGGGGA-CC-ATGCCGATCCTCGGCTTA
775 ACTG-AGG-T-TGGTAGTAGG--TGGTAGCACACAGAGCGGGACCCGAT--CGATCCTC-GCTTG
* * *
16020679 CGCATCCCACCCCTTTGGCCGGTTGAGTGCCCGTACGCTCGTTTCATGGGTTGAC
832 CGCATCCCGCCCC-AT-GCCGG-TGAG-GCCCGCACGCT--TTTCATGGGTTGAC
* * * * *
16020734 ATAGGCATATGAAGTATATTCCCAGTCTAAGCATATGGAGTTCATTCCTAATCTAAGATCGGATC
1 -TAGGCATATGGAGT-TATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * *
16020799 GGACCGAGGGTTGCGGCAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATC
64 AGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATC
* *
16020864 GGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGG
129 GGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GG
* *
16020929 GGGGCCAGGGTGGGTGTGCGCACATGATATGTGATGGGTGCTGGTACTTTGCCCTTATATTGGCC
193 GGGGCCAGGG-GGGTGTGCGCACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* *
16020994 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTGAAAAAGCATTTGAGATTTTACAGGTT
257 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* *
16021059 TGCTACCAGTAGCCATTAAAGTATCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
322 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * *
16021124 TACAGTTCGAGTTTTTAGCTGAATTTGTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
387 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAC
* * * *
16021189 CTAGTTT-GGGCCAAAACT-CTGTTC-AAAAAATTTTTAAAAAATCTTGAATCGCAAAAAGTTTC
452 CAAGTTTGGGGCCAAAACTCCT-TCCGAAAAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTC
** * * *
16021251 AAAAATTGTGAAATATAGAAAACGAGTCGTCTTGCCATGAAACTTTACGTGAAGGCTTAAGAGAC
516 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* * *
16021316 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGTACGTAGAAATATGAAGATGTGCCCAAA
581 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAA
** *
16021381 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATTCTGTCTCTCTAGCCGGTGTTGTGCCCGC
646 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATTCCATCTCTCTGGCCGGTGTTGTGCCCGC
*
16021446 CCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
711 CCGCCCGCTC-TTTCGTC-GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
** *
16021511 GACTGAGGGTTGCAGTAGTAGGCTCGGTAGCACGTAGAGTGGGACCCGATCGATCCTCGACTTGC
774 GACTGA-GGTTG--GTAGTAGG-T-GGTAGCACACAGAGCGGGACCCGATCGATCCTCG-CTTGC
*
16021576 GCATCCCGCCCCACTAGCCGGTGAGCGCCCGCACGCCTATTTCGTGGGTTGAC
833 GCATCCCGCCCCA-T-GCCGGTGAG-GCCCGCACG-CT-TTTCATGGGTTGAC
* * *
16021629 TCAGGCATACGGAGTTGATTCCCAGTTTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACC
1 T-AGGCATATGGAGTT-ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * * * * *
16021694 AGACCGAGGGTTACGGTAGCACATACTGGGCTCGAGCATGTGCTGGT-CCTGCATTTTTCATCAC
64 AGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC-GCATTTTTCTTCAT
* * * * **
16021758 CGGGGCACCATCGCCAGAGCATCACCGGAGAACCTGACCGGTGGCATTGGGGTACCGGTGATCGG
128 CGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-G
*
16021823 GGGGGCCGACCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
192 GGGGGCC-A--GGGGGGTGTGCGCACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTG
*
16021888 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAG
254 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* * *
16021953 GTTTGCTGCCAGTAGCCACTAAAGTGTCTAAAATGGGGACATTTTTTTCAAATGGTCACAAAATC
319 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
*
16022018 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
384 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTC
** * * *
16022083 TACCAAGTTTGGGGTTAAAACTCCTTCCG-AAAAAATTTTAAAAAAACTGGAACCGTAAAAAGTT
449 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAATTTTAAAAAATCTTGAACCGCAAAAAGTT
** * * *
16022147 TTGAAAATCCTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGG
514 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* * *
16022212 ACCATTTTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTA
579 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTA
* * *
16022277 AACCCACCTACCACCTTATCGATCCACGGCTTGCGTATCCCATCTCTCTGGCCGGTGTTGTGCCC
644 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATTCCATCTCTCTGGCCGGTGTTGTGCCC
** * **
16022342 GCCCGCCCGC-C--T-G-C-----C-----C--AC-CCGTTCATTCCCAATCTAAGATTGGACCG
709 GCCCGCCCGCTCTTTCGTCGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
* *
16022389 GACCGA---TGGT--T--GTGGTAGCACACAGAGCGGGACCCGACCGATCC-C-C--G-G-----
774 GACTGAGGTTGGTAGTAGGTGGTAGCACACAGAGCGGGACCCGATCGATCCTCGCTTGCGCATCC
* * * *
16022437 -G----ATG-C--T------CGCTCG--TTTAATAGTTTGAC
839 CGCCCCATGCCGGTGAGGCCCGCACGCTTTTCATGGGTTGAC
* * * **
16022463 TTAGGCATATGGAGTTTATTACCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGAAAT
1 -TAGGCATATGGAG-TTATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* *
16022528 AGACCGAGGGTT-CTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTTTTCAT
64 AGACCGAGGGTTGC-GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCAT
* * * * *
16022592 CGGGGCACCAACACCGGAGCATCGTCGGAGAACCTGACCAGCGGCATTGGGGTTCCGACAATCGG
128 CGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGG
* *
16022657 GGGGCC-GAGGGGTGTGCGCACATGATATGCGATGGGTGCTAGTACTTGGCCCTTATA-TGTGCC
193 GGGGCCAGGGGGGTGTGCGCACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTG-GCC
* * **
16022720 CCCTATCCCTCATCAAACCTTGAGCACTCACACCCCCTTAAAGAGCATTAAAGATTTTACAGGTT
257 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
*
16022785 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAGTGGTCACAAAATCTTG
322 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * *
16022850 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCACGCAAAAAAAAATGCAAGGATCACGTCTAC
387 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAC
* * * * * *
16022915 CAAGTTTGCGGCTAAAAATCCTTTCGAAAAGAAATTTTAAAAAGATCTCCG-ACCGTAAAAAAGT
452 CAAGTTTGGGGCCAAAACTCCTTCCGAAAA-AAATTTTAAAAA-ATCT-TGAACCG-CAAAAAGT
* *
16022979 TTCACAAATCATCGAAAAA-AGAAAACGAGTCGTTCTTTCCAGTGGAAACTCTTCACGT-AAGGC
513 TTCAAAAATCAT-GAAAAATAGAAAACGAGTCG-TCTTGCCA-T-GAAA--CTTCACGTGAAGGC
* * ***
16023042 TTTAAGGGACGCATTGTATTAATTGTAACAAGCCATAAAAATGGCATCGAGCGTACAGAAATATG
572 -TTAAGGGAC-CATTGTATGAATT-T-ACAAGCCATAAAAATGGCATTG-GCACGCAGAAATATG
**
16023107 AAGATGTGCCTAAACCCA-CTACCACCCTAATCGATCCATTGCTTGCGCAT
632 AAGATGTGCCTAAACCCACCTACCACCCT-ATCGATCCACGGCTTGCGCAT
16023157 CCCGTCTTTT
Statistics
Matches: 3600, Mismatches: 431, Indels: 314
0.83 0.10 0.07
Matches are distributed among these distances:
828 2 0.00
829 255 0.07
830 3 0.00
831 12 0.00
832 7 0.00
833 37 0.01
834 180 0.05
835 5 0.00
836 4 0.00
837 5 0.00
838 21 0.01
839 11 0.00
840 1 0.00
841 30 0.01
842 48 0.01
845 1 0.00
846 45 0.01
847 49 0.01
848 3 0.00
849 2 0.00
850 2 0.00
853 1 0.00
854 5 0.00
855 4 0.00
856 53 0.01
857 283 0.08
858 37 0.01
860 2 0.00
861 7 0.00
862 236 0.07
863 4 0.00
864 4 0.00
865 1 0.00
866 27 0.01
867 3 0.00
868 3 0.00
870 2 0.00
871 7 0.00
872 112 0.03
873 22 0.01
874 2 0.00
875 1 0.00
876 2 0.00
878 29 0.01
879 2 0.00
880 9 0.00
881 4 0.00
882 3 0.00
884 116 0.03
885 2 0.00
886 1 0.00
887 2 0.00
888 47 0.01
889 96 0.03
890 325 0.09
891 63 0.02
892 397 0.11
893 43 0.01
894 7 0.00
895 200 0.06
896 119 0.03
897 246 0.07
898 230 0.06
899 2 0.00
901 1 0.00
904 114 0.03
905 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (880 bp):
TAGGCATATGGAGTTATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG
ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGG
GGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGG
GCCAGGGGGGTGTGCGCACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAG
TTTGGGGCCAAAACTCCTTCCGAAAAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTCAAAAA
TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCAC
CTACCACCCTATCGATCCACGGCTTGCGCATTCCATCTCTCTGGCCGGTGTTGTGCCCGCCCGCC
CGCTCTTTCGTCGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAG
GTTGGTAGTAGGTGGTAGCACACAGAGCGGGACCCGATCGATCCTCGCTTGCGCATCCCGCCCCA
TGCCGGTGAGGCCCGCACGCTTTTCATGGGTTGAC
Found at i:16024468 original size:829 final size:832
Alignment explanation
Indices: 16021624--16025688 Score: 4690
Period size: 829 Copynumber: 4.8 Consensus size: 832
16021614 ATTTCGTGGG
* * * * * * *
16021624 TTGACTCAGGCATACGGAGTTGATTCCCAGTTTAAGCATACGGAGTTCATTCCCAGTCTAAGATT
1 TTGACTTAGGCATATGGAGTTCATTACCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATC
* * * *
16021689 GGACCAGACCGAGGGTTAC-GGTAGCACATACTGGGCTCGAGCATGTGCTGGT-CCTGCATTTTT
66 GGACTAGACCGAGGGTT-CTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC-GCATTTTT
** * * * * * * **
16021752 CATCACCGGGGCACCATCGCCAGAGCATCACCGGAGAACCTGACCGGTGGCATTGGGGTACCGGT
129 TTTCATCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGAC
16021817 GATCGGGGGGGCCGACCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
194 GATC-GGGGGGCCGA----GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
*
16021882 ATAT-TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
254 ATATGT-GCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* * * *
16021946 TTTATAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTAAAATGGGGACATTTTTTTCAAATGGTCA
318 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
16022011 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
383 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* * *
16022076 TCACGTCTACCAAGTTTGGGGTTAAAACTCCTTCCGAAAAAATTTTAAAAAAACTGGAACCGTAA
448 TCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAA
* *
16022141 AAAGTTTTGAAAATCCTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCT
513 AAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
* *
16022206 TAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATG
578 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
* * *
16022271 TGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTGCGTATCCCATCTCTCTGGCCGGTGTT
643 TGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGATGTT
16022336 GTGCCCGCCCGCCCGCCTGCC-CACCCGTTCATTCCCAATCTAAGATTGGACCGGACCGATGGTT
708 GTGCCCGCCCGCCCGCCTGCCACACCCGTTCATTCCCAATCTAAGATTGGACCGGACCGATGGTT
* *
16022400 GTGGTAGCACACAGAGCGGGACCCGACCGATCCCCG-G-GATGCTCGCTCGTTTAATAGT
773 GTGGTAGCACACAGAGCGGGACCCGACCGATCCCCGCGTGATGCACGCTCGTTTAATGGT
*
16022458 TTGACTTAGGCATATGGAGTTTATTACCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATC
1 TTGACTTAGGCATATGGAGTTCATTACCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATC
* * *
16022523 GAAATAGACCGAGGGTTCTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTTT
66 GGACTAGACCGAGGGTTCTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTT
* * * *
16022588 TCATCGGGGCACCAACACCGGAGCATCGTCGGAGAACCTGACCAGCGGCATTGGGGTTCCGACAA
131 TCATCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGA
* *
16022653 TCGGGGGGCCGAGGGGTGTGCGCACATGATATGCGATGGGTGCTAGTACTTGGCCCTTATATGTG
196 TCGGGGGGCCGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATGTG
* **
16022718 CCCCCTATCCCTCATCAAACCTTGAGCACTCACACCCCCTTAAAGAGCATTAAAGATTTTACAGG
261 CCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
*
16022783 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAGTGGTCACAAAATCT
326 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* * * *
16022848 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCACGCAAAAAAAAATGCAAGGATCACGTCT
391 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * *
16022913 ACCAAGTTTGCGGCTAAAAATCCTTTCGAAAAGAAATTTTAAAAAGATCTCCG-ACCGTAAAAAA
456 ACCAAGTTTGGGGCTAAAACTCCTTCCG-AAA-AAATTTTAAAAA-ATCT-CGAACCGT-AAAAA
* * *
16022977 G-TTTCACAAATCATCGAAAAA-AGAAAACGAGTCGTTCTTTCCAGTGGAAACTCTTCACGT-AA
516 GTTTTGA-AAATCAT-GAAAAATAGAAAATGAGTCG-TCTTGCCA-T-GAAA--CTTCACGTGAA
* * * *
16023039 GGCTTTAAGGGACGCATTGTATTAATTGTAACAAGCCATAAAAATGGCATCGAGCGTACAGAAAT
574 GGC-TTAAGGGAC-CATTGTATGAATT-T-ACAAGCCATAAAAATGGCATTG-GCATGCAGAAAT
* ** *
16023104 ATGAAGATGTGCCTAAACCCA-CTACCACCCTAATCGATCCATTGCTTGCGCATCCCGTCTTTTC
634 ATGAAGATGTGCCTAAACCCACCTACCA-CCTTATCGATCCACGGCTTGCGCATCCCGTC-TCTC
* * * * * *** * * * *** **
16023168 TTGGCCGACGTCGTGCCCGCCCACCTGCC-GCCGCTGTCG-TC-GT-GCTA-CGCCG-TAAG-CC
697 -TGGCCGATGTTGTGCCCGCCCGCCCGCCTGCCACACCCGTTCATTCCCAATCTAAGATTGGACC
* * * ** * * * * * * * * * * *
16023226 CGATCGA-AGTT-ACGTACGGATACTGCAGGGGGA-CC-ATCGATCCCGGTTGCGAT-TAGGCGC
761 GGACCGATGGTTGTGGTA-GCACACAG-AGCGGGACCCGACCGATCCCCG-CGTGATGCACGCTC
16023286 -TTT--T--T
823 GTTTAATGGT
* * * *
16023291 TTGACTT----ATA-CGAGTTCATT-CC-GTCTAAG-AT-TGGAGTTCATTCCCAGTCTAACATC
1 TTGACTTAGGCATATGGAGTTCATTACCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATC
* * *
16023347 GGACT-GAACCGAGGGTT-TCGGTAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGTATTTTT
66 GGACTAG-ACCGAGGGTTCT-GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
* * ** * * * *
16023410 CTTC-TCCGGGCACCATCATTGGAGCATCGCCGGAGAACCTGACCGGCGACTTTGGGGTTTCGAT
129 TTTCATCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGAC
* *
16023474 GATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTA-------C---T-TG
194 GATCGGGGGGCCGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATG
* * *
16023528 -GCCCCCTATCCCTCATCAAACATCGAGAACTCACACCCCCTTAAGGAGCATTTGAGATTTTACA
259 TGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* * *
16023592 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATTGGGACACTTTTTTCAAAAGGTCACAAAAT
324 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
16023657 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
389 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* *
16023722 CTACCAAGTTTGGGGTTAAAACTCCTTCCGAAAAAATTTTAAAAAAACTCGAACCGTAAAAAGTT
454 CTACCAAGTTTGGGGCTAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTT
* *
16023787 TTGAAAATCCTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGG
519 TTGAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* * *
16023852 ACCATTTTATGAATTTACAAGCTATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTA
584 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
* * *
16023917 AACCCACCTACCACCTTATCGATCCACGGCTTGCGTATCCCATCTCTCTGGCCGGTGTTGTGCCC
649 AACCCACCTACCACCTTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGATGTTGTGCCC
16023982 GCCCGCCCGCCTGCC-CACCCGTTCATTCCCAATCTAAGATTGGACCGGACCGATGGTTGTGGTA
714 GCCCGCCCGCCTGCCACACCCGTTCATTCCCAATCTAAGATTGGACCGGACCGATGGTTGTGGTA
16024046 GCACACAGAGCGGGACCCGACCGATCCCCG-G-GATGCACGCTCGTTTAATGGT
779 GCACACAGAGCGGGACCCGACCGATCCCCGCGTGATGCACGCTCGTTTAATGGT
*
16024098 TTGACTTAGGCATATGGAGTTTATTACCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATC
1 TTGACTTAGGCATATGGAGTTCATTACCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATC
* * *
16024163 GAAATAGACCGAGGGTTCTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTTT
66 GGACTAGACCGAGGGTTCTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTT
* * * *
16024228 TCATCGGGGCACCAACACCGGAGCATCGTCGGAGAACCTGACCAGCGGCATTGGGGTTCCGACAA
131 TCATCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGA
* *
16024293 TCGGGGGGCCGAGGGGTGTGCGCACATGATATGCGATGGGTGCTAGTACTTGGCCCTTATATGTG
196 TCGGGGGGCCGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATGTG
* **
16024358 CCCCCTATCCCTCATCAAACCTTGAGCACTCACACCCCCTTAAAGAGCATTAAAGATTTTACAGG
261 CCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
*
16024423 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGATACTTTTTTCAAATGGTCACAAAATCT
326 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* * * * *
16024488 TGTACACTCCGAGTTTTTGGCTGAATTTTTTTATGCACGCCAACAAAAATTCAAGGATCACGTCT
391 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * * * * *
16024553 ACCAAGTTTGGGGCAAAAACTCTTTCCAAAAAAATTTTAAAAAATCTCGAACCATCAAAAGTTAT
456 ACCAAGTTTGGGGCTAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTT
* *
16024618 GAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCAATGAAACTTCACGTGAGGGCTTAAGGG-C
521 GAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
*
16024682 CATTGTATGAATTTACAAGTCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
586 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
* * * *
16024747 CCCACCTACCACCCTATCGGTCCACGGCTTGCGCATTCCGTCTCTCTGGCCGATGTAGTGCCCGC
651 CCCACCTACCACCTTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGATGTTGTGCCCGC
* * ** * **
16024812 CTGCCCGTTCATTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGATAG
716 CCGCCCG--C----C------T-GC-----CACAC-CCGTTCATTCCCAATCTAAGATTGGACCG
* * * * * *
16024877 AAGCAAGGGTTGTGGCAGCAAGATTGACAGCACATGGAGGGGGACTTGGCTGATCCCCGGCTTGC
762 GACCGATGGTTGT----G---G-TAG-CA-CACA--GA----G-C--GG--GA--CCCGAC---C
* ** *
16024942 GCATCCCGCCTCTCTGGCCAGTTGAGCGCCCGCACGCTCGTTTCGTGGG
801 G-AT----CC-C-C--G-C-G-TGA-----TGCACGCTCGTTTAATGGT
* * * *
16024991 TTGACTTAGGCATATAGAGTTCATTCCCAGGCTAAGCTTAC-AGAGTTCATTCCCAGTCTAAGAT
1 TTGACTTAGGCATATGGAGTTCATTACCAGTCTAAGCATACGA-AGTTCATTCCCAGTCTAAGAT
* * * * * * * * *
16025055 CGGACCAAACCAAAGGTTGTGACAGCACATGCTTGGCTTGGGCATGTGCTGGT-CCGTATTTTTC
65 CGGACTAGACCGAGGGTTCTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT-
* * * *
16025119 TTTGC--CGGAGCACCATCGCCGGAGCATCGCCGGAGAACCTGATCGGCGGCATTGGGGTTCCGG
129 TTT-CATCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGA
*
16025182 CGATCGGGGGGCCGGGGGGTGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
193 CGATCGGGGGGCC-GAGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
*
16025247 AT-TGGCCCCCTATCCCTCATCAAACCTTGGGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
256 ATGT-GCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* * * * * * *
16025311 TATAGGTTTACTACCAGTAGCAATTAAAGTGTTTGAATTGGGGACACTTTTTTCAATTGGTCACA
320 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* * *
16025376 AAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATG
385 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
* * * * * * * * *
16025441 ACGTCTACCCACTTTGGGGCCAAAAATCCTTTCAAAAAAATTTTAAAAAATCCCAAACCGCAAAA
450 ACGTCTACCAAGTTTGGGGCTAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAA
** * * * *
16025506 AGTTTCAAAAATCATGAAAAATAGAAAATGAGTCATCTCGCTATGAAACTTCACGTGAACGCTTA
515 AGTTTTGAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
* * * *
16025571 AGGGACCACTGTATGAATTTACAAGCCATGAAAATGGCATTGGCACGTAGAAATATGAAGATGT-
580 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTG
*
16025635 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
645 CCTAAACCCACCTACCACCTTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
16025689 ACCAGTGCCA
Statistics
Matches: 2735, Mismatches: 347, Indels: 238
0.82 0.10 0.07
Matches are distributed among these distances:
796 26 0.01
797 8 0.00
798 57 0.02
799 28 0.01
800 3 0.00
801 16 0.01
802 34 0.01
803 18 0.01
804 16 0.01
805 2 0.00
806 13 0.00
807 34 0.01
808 12 0.00
809 12 0.00
810 3 0.00
811 209 0.08
812 10 0.00
813 3 0.00
814 7 0.00
815 2 0.00
816 79 0.03
817 97 0.04
823 97 0.04
824 79 0.03
825 2 0.00
826 7 0.00
827 3 0.00
828 136 0.05
829 555 0.20
830 5 0.00
831 12 0.00
832 12 0.00
833 44 0.02
834 179 0.07
835 3 0.00
836 16 0.01
837 18 0.01
838 33 0.01
839 16 0.01
840 4 0.00
841 31 0.01
842 57 0.02
843 8 0.00
844 26 0.01
846 1 0.00
847 2 0.00
848 33 0.01
852 1 0.00
855 1 0.00
856 2 0.00
857 2 0.00
858 4 0.00
860 2 0.00
864 1 0.00
865 1 0.00
867 2 0.00
869 2 0.00
871 5 0.00
874 2 0.00
875 2 0.00
879 2 0.00
880 1 0.00
881 1 0.00
883 1 0.00
886 1 0.00
888 2 0.00
892 72 0.03
893 123 0.04
894 383 0.14
895 54 0.02
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (832 bp):
TTGACTTAGGCATATGGAGTTCATTACCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATC
GGACTAGACCGAGGGTTCTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTT
TCATCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGA
TCGGGGGGCCGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATGTG
CCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
ACCAAGTTTGGGGCTAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTT
GAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
CCCACCTACCACCTTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGATGTTGTGCCCGC
CCGCCCGCCTGCCACACCCGTTCATTCCCAATCTAAGATTGGACCGGACCGATGGTTGTGGTAGC
ACACAGAGCGGGACCCGACCGATCCCCGCGTGATGCACGCTCGTTTAATGGT
Found at i:16026842 original size:711 final size:713
Alignment explanation
Indices: 16025033--16027916 Score: 3972
Period size: 709 Copynumber: 4.0 Consensus size: 713
16025023 TAAGCTTACA
* * ** * *
16025033 GAGTTCATTCCCAGTCTAAGATCGGACCAAACCAAAGGTTGTGACAGCACATGCTTGGCTTGGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTACGACAGCACATGCTGGGCTCGGGC
* * * * *
16025098 ATGTGCTGGT-CCGTATTTTTCTTTGCCGGAGCACCATCGCCGGAGCATCGCCGGAGAACCTGAT
66 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGAC
16025162 CGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGTGTGTGCGCACATGATGTGCGATGG
131 CGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGG-GTGTGCGCACATGATGTGCGATGG
***
16025226 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGGGAACTCACACCCCC
195 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCC
* * * *
16025291 TTAAAGAGCATTTGAGATTTTATAGGTTTACTACCAGTAGCAATTAAAGTGTTTGAATTGGGGAC
260 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCAATTAAAGTGTCTGAAATGGGGAC
* *
16025356 ACTTTTTTCAATTGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATG
325 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * *
16025421 CCAAAAAAAATACAAGGATGACGTCTACCCACTTTGGGGCCAAAAATCCTTTCAAAAAAATTTTA
390 -CAAAAAAAATACAAGGATCACGTCTACCCAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTA
* * * * *
16025486 AAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCATCTCGCTATG
454 AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
* * *
16025551 AAACTTCACGTGAACGCTTAAGGGACCACTGTATGAATTTACAAGCCATGAAAATGGCATTGGCA
519 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* *
16025616 CGTAGAAATATGAAGATGT-CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
584 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * *
16025680 GTCTCTCTGACCAGTGCCATGACCGCCCGCCCGC-CCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
649 GTCTCTCTGGCC-G-G-CGT-A-CG-CTGCCCGCTCTGCCCGCTCGTTTCGTCGGTTGGCTTAGG
16025744 CATACG
708 CATACG
* * ***
16025750 GAGTTCATTCCAAGTCTAAGATCAGACTGGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTACGACAGCACATGCTGGGCTCGGGC
* * * *
16025815 ATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCCCCAGAGCATCGTCGGAGAACCTGAC
66 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGAC
* *
16025880 CGGCGGCATTAGGGTTCCAGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGG
131 CGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGG
*
16025945 TGCTGGTACTTGGCCCTTATATT-GCCTCCCTATCCCTCATCAAACCTTAAGAACTCACACCCCC
196 TGCTGGTACTTGGCCCTTATATTGGCC-CCCTATCCCTCATCAAACCTCAAGAACTCACACCCCC
* * * * **
16026009 TTAAGGACCATTTGAGATTTTACAGGTTTGCTACCAGTAGCAATTAATGTGTCTGAATTAAGGAC
260 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCAATTAAAGTGTCTGAAATGGGGAC
*
16026074 ACTTTTTTCAAATGGTCATAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATC
325 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT-
* * *
16026139 GCAACAAAAATGCAAGGATCACATCTA-CCAGGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTT
389 GCAAAAAAAATACAAGGATCACGTCTACCCA-GTTTGGGGCCAAAAATCCTTCCAAAAAAATTTT
* * ** *
16026203 AAAAAACTCCTGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCA
453 AAAAAA-TCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
*
16026268 TGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGCATTGG
517 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
*
16026333 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATC
582 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* *
16026398 CCGTCTCTCTGGCCGGCGTA-G-TGCCCGCTC-GCCCGCTCGTTTTGTCGATTGGCTTAGGCATA
647 CCGTCTCTCTGGCCGGCGTACGCTGCCCGCTCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
16026460 CG
712 CG
** ** * *
16026462 GAGTTCATTCCCAGTCTAAGATCGGACCAAATTGAGGGTTGTGGCAGCACATGCTGGGCTCGAGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTACGACAGCACATGCTGGGCTCGGGC
* *
16026527 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGTCGGAGAACCTGAC
66 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGAC
* * *
16026592 CGGCGGCATTGGGGTTCCGGTGATCGGGGGGGCC-GGGTGGTGTGCTCACATGATGTGCGATGGG
131 CGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGG
* *
16026656 TGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCCCACCCCCT
196 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCT
* * * *
16026721 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGACTGAAATGGGGACA
261 TAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCAATTAAAGTGTCTGAAATGGGGACA
* * * *
16026786 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGTGGTTTTAGCTGATTTTTTTTGTGCATAC
326 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT-G
* * *
16026851 CAAAAAAAATTCAAGGATCACCTCTACCCAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAA
390 CAAAAAAAATACAAGGATCACGTCTACCCAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAA
* * * * * *
16026916 AAAATCTCGAACCACAAAAATTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGGCATGA
455 AAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* *
16026981 AACTTCACGTGAAGCCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
520 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
16027046 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT-CCG
585 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * ** *
16027110 ---ATC-GG-CGTAGTGCT-CGCCCACCCGC-CTGCCCGCTTGTTTCGTCGGTTGGCTTAGGCAT
650 TCTCTCTGGCCG--GCG-TACG-CTGCCCGCTCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
16027168 ACG
711 ACG
* * ** * * * * *
16027171 GAGTTCATTCCCAGCCTAAGATCGAACCGGACCTAGGCTTACGACAGCACATACTGTGCTAGGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTACGACAGCACATGCTGGGCTCGGGC
* ** * * * * *
16027236 ATGTGCTGGTGCCACATTTTTCTTCGTTAGGCCACGATCACCGAAGCATCGCCGGAGAACCTGAT
66 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGAC
* * * * *
16027301 CGGCGACGTTGGGGTTCCTGCGAT-GAGAGGGGCC-GGGGGGTGTGCGCACATGATGTACGATGG
131 CGGCGGCATTGGGGTTCCGGCGATCG-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGG
* * * * *
16027364 GTGCTGGTACCTGGACCTTATATTGGCCCCCTATCCCTCATCAAATCTCGAGAACTCGCACCCCC
195 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCC
** *
16027429 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
260 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCAATTAAAGTGTCTGAAATGGGGAC
* *
16027494 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTACGAGTTTTTAGCTGATTTTTTTTGTGCATG
325 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * * **
16027559 CAAACAAAAATACAAGGATGACGTATACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTA
390 CAAA-AAAAATACAAGGATCACGTCTACCCAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTA
*
16027624 AAAAATCCCGAACCGCAAAAGGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
454 AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
* * * *
16027689 AAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTACGAGCCATAAAAATGCCATTGGCT
519 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
** * * * *
16027754 TATAAAAATATGAAGATGTGCGTAAACCCTCCTACCACCCTATCGATCCATGGCTTGCGCATCCC
584 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
*
16027819 GTCTCTCTGGCCGGCGTAGTGGCCGCTTGCCCGCCTGCCTGCCCGCTCGTTTTGTCGGTTGGCTT
649 GTCTCTCTGGCCGGCGTA-----CGC-TGCCCG-CT--CTGCCCGCTCGTTTCGTCGGTTGGCTT
16027884 AGGCATACG
705 AGGCATACG
*
16027893 GAGCTCATTCCCAGTCTAAGATCG
1 GAGTTCATTCCCAGTCTAAGATCG
16027917 AACTGGACCA
Statistics
Matches: 1927, Mismatches: 204, Indels: 67
0.88 0.09 0.03
Matches are distributed among these distances:
704 2 0.00
705 2 0.00
706 4 0.00
707 2 0.00
708 6 0.00
709 605 0.31
710 177 0.09
711 261 0.14
712 191 0.10
713 5 0.00
714 3 0.00
715 2 0.00
716 1 0.00
717 73 0.04
718 337 0.17
719 145 0.08
720 55 0.03
722 56 0.03
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (713 bp):
GAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTACGACAGCACATGCTGGGCTCGGGC
ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGAC
CGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGG
TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCT
TAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCAATTAAAGTGTCTGAAATGGGGACA
CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
AAAAAAAATACAAGGATCACGTCTACCCAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAA
AAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
CTCTCTGGCCGGCGTACGCTGCCCGCTCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
Found at i:16028974 original size:26 final size:26
Alignment explanation
Indices: 16028945--16028997 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16028935 GGGTTGACTG
**
16028945 AGGCATATGGAGTTCATTCCCAGTCT
1 AGGCATACAGAGTTCATTCCCAGTCT
*
16028971 AGGCATACAGAGTTCATTCTCAGTCT
1 AGGCATACAGAGTTCATTCCCAGTCT
16028997 A
1 A
16028998 AGATCGGACT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
AGGCATACAGAGTTCATTCCCAGTCT
Found at i:16029162 original size:902 final size:904
Alignment explanation
Indices: 16027161--16029357 Score: 3472
Period size: 902 Copynumber: 2.4 Consensus size: 904
16027151 TCGGTTGGCT
* * * * * * * ** *
16027161 TAGGCATACGGAGTTCATTCCCAGCCTAAGATCGAAC-CGGACCTAGGCTTACGACAGCACATAC
1 TAGGCATACAGAGTTCATTCTCAGTCTAAGATCGGACTC-GATCGAGGGTTACGGTAGCACATGC
* * * ** * ** * **
16027225 TGTGCTAGGGCATGTGCTGGTGCCACATTTTTCTTCG-TTAGGCCACGATCACCGAAGCATCGCC
65 TGGGCTCGGGCATGTGCTGGTGCCACTTTTTTCTTCGCCAAGG-CACCATCGTCGGAGCATCATC
* * * * * * *
16027289 GGAGAACCTGATCGGCGACGTTGGGGTTCCTG-CGAT-GAGAGGGGCCGGGGGGTGTGCGCACAT
129 GGAGAACCTGACCGACGACATTGGGGTT-CTGTCAATCG-GGGGGGTC-GGGGGTGTGCGCACAC
* * * * * * *
16027352 GATGTACGATGGGTGCTGGTACCTGGACCTTATATTGGCCCCCTATCCCTCATCAAATCTCGAGA
191 GATGTGCGATGGGTGCGGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCAACAAACCTCGAGA
*
16027417 ACTCGCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTC
256 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTC
* * *
16027482 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTACGAGTTTTTAGCTGATTT
321 TGAAATGGGGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * *
16027547 TTTTTGTGCATGCAAACAAAAATACAAGGATGACGTATACCAAGTTTGGGGCCAAAACTCCTTCT
386 TTTTTGTGCATGCAAACAAAAATACAAGGATCACGTACACCAAGTTTGGGGCCAAAAATCCTTCT
* *
16027612 GAAAAAATTTTAAAAAATCCCGAACCGCAAAAGGTTTCAAAAATCATGAAAAATAGAAAACGAGT
451 GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTAAAAAATCATGAAAAATAGAAAACGAGT
* *
16027677 CGTCTTGCCATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTACGAGCCATAAAA
516 CGTCATGCCATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
** * * * * *
16027742 ATGCCATTGGCTTATAAAAATATGAAGATGTGCGTAAACCCTCCTACCACCCTATCGATCCATGG
581 ATGCCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGG
* * * *
16027807 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGGCCGCTTGCCCGCCTGCCTGCCCGCTCGTTTT
646 CTTGCGCATCCCGTCCCTCTGGCCGGCGTAGTGGCCGC-T-CCCGCCTGCCCGCCCGCTCATTTC
*
16027872 GTCGGTTGGCTTAGGCATACGGAGCTCATTCCCAGTCTAAGATCGAACTGGACCAAGGGTTACGG
709 ATCGGTTGGCTTAGGCATACGGAGCTCATTCCCAGTCTAAGATCGAACTGGACCAAGGGTTACGG
* *
16027937 TAGCAGGATTGATAGTACACAAAGAGGGACCCGGTCGATCCCTGGCTTGCGCATCCCACCCCTCT
774 TAGCAAGATTGATAGTACACAAAGAGGGACCCGATCGATCCCTGGCTTGCGCATCCCACCCCTCT
*
16028002 GGCAGACTGAGCGCCCATACGCTCGTTCTGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGT
839 GGCAGACTGAGCGCCCATACGCTCGTTCTGTGGGTTGACTGAGGCATATGGAGTTCATTCCCAGT
16028067 C
904 C
* *
16028068 TAAGCATACAGAGTTCATTCTCAGTCTCAGATCGGACTCGATCGAGGGTTACGGTAGCACATGCT
1 TAGGCATACAGAGTTCATTCTCAGTCTAAGATCGGACTCGATCGAGGGTTACGGTAGCACATGCT
16028133 GGGCTCGGGCATGTGCTGGTGCCACTTTTTTCTTCGCCAAGGCACCATCGTCGGAGCATCATCGG
66 GGGCTCGGGCATGTGCTGGTGCCACTTTTTTCTTCGCCAAGGCACCATCGTCGGAGCATCATCGG
16028198 AGAACCTGACCGACGACATTGGGGTTCTGTCAATCGGGGGGGTCGGGGGTGTGCGCACACGATGT
131 AGAACCTGACCGACGACATTGGGGTTCTGTCAATCGGGGGGGTCGGGGGTGTGCGCACACGATGT
16028263 GCGATGGGTGCGGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCAACAAACCTCGAGAACTCA
196 GCGATGGGTGCGGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCAACAAACCTCGAGAACTCA
* *
16028328 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTGGCCATTAAAGTGTCTTAAA
261 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAA
* * *
16028393 TGGGGACACTTTTTTCAAAAGGTCACAAAATATTGTACACTTTGATTTTTTAGCTGAATTTTTTT
326 TGGGGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
16028458 GTGCATGCCAATAAAAATACAAGGATCACGTCCACCAAGTTTGGGTCCAAAAATCCTTCTGAAAA
391 GTGCATGCAAACAAAAATACAAGGATCACGTACACCAAGTTTGGGGCCAAAAATCCTTCTGAAAA
*
16028523 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTAAAAAATTATGAAAAATAGAAAACGAGTCGTCA
456 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTAAAAAATCATGAAAAATAGAAAACGAGTCGTCA
* * * *
16028588 TGGCATGACACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
521 TGCCATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGCC
* * *
16028653 ATTGGCACACAGAAATATGAAGATGTTCCTAAACCCACCAACCACCCTATGGATCCACGGCTTGC
586 ATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGC
*
16028718 GCATCCCGTCCCTCTGGCCGGCGTAGT-GCC-C-CCCTGCCTGCCCGCTCGCTCATTTCATCGGT
651 GCATCCCGTCCCTCTGGCCGGCGTAGTGGCCGCTCCC-GCCTGCCCGCCCGCTCATTTCATCGGT
* *
16028780 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACCAAGGGTTGCGGTAGCAA
715 TGGCTTAGGCATACGGAGCTCATTCCCAGTCTAAGATCGAACTGGACCAAGGGTTACGGTAGCAA
* *
16028845 GATTGATAGTACACAGAGAGGGACCCGATCGATCCCTGGCTTGCGCATCCCACCCCTCTGGCCGA
780 GATTGATAGTACACAAAGAGGGACCCGATCGATCCCTGGCTTGCGCATCCCACCCCTCTGGCAGA
16028910 CTGAGCGCCCATACGCTCGTTCTGTGGGTTGACTGAGGCATATGGAGTTCATTCCCAGTC
845 CTGAGCGCCCATACGCTCGTTCTGTGGGTTGACTGAGGCATATGGAGTTCATTCCCAGTC
16028970 TAGGCATACAGAGTTCATTCTCAGTCTAAGATCGGACTCGATCGAGGGTTACGGTAGCACATGCT
1 TAGGCATACAGAGTTCATTCTCAGTCTAAGATCGGACTCGATCGAGGGTTACGGTAGCACATGCT
16029035 GGGCTCGGGCATGTGCTGGTGCCACTTTTTTCTTCGCCAAGGCACCATCGTCGGAGCATCATCGG
66 GGGCTCGGGCATGTGCTGGTGCCACTTTTTTCTTCGCCAAGGCACCATCGTCGGAGCATCATCGG
16029100 AGAACCTGACCGACGACATTGGGGTTCTGTCAATCGGGGGGGTCGGGGGTGTGCGCACACGATGT
131 AGAACCTGACCGACGACATTGGGGTTCTGTCAATCGGGGGGGTCGGGGGTGTGCGCACACGATGT
16029165 GCGATGGGTGCGGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCAACAAACCTCGAGAACTCA
196 GCGATGGGTGCGGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCAACAAACCTCGAGAACTCA
* *
16029230 CACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
261 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAA
* *
16029295 TGGGGACACTTTTTTTAAAGGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
326 TGGGGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
16029358 AGCTCGTTTC
Statistics
Matches: 1189, Mismatches: 96, Indels: 15
0.91 0.07 0.01
Matches are distributed among these distances:
901 3 0.00
902 582 0.49
904 1 0.00
905 3 0.00
906 462 0.39
907 133 0.11
908 5 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (904 bp):
TAGGCATACAGAGTTCATTCTCAGTCTAAGATCGGACTCGATCGAGGGTTACGGTAGCACATGCT
GGGCTCGGGCATGTGCTGGTGCCACTTTTTTCTTCGCCAAGGCACCATCGTCGGAGCATCATCGG
AGAACCTGACCGACGACATTGGGGTTCTGTCAATCGGGGGGGTCGGGGGTGTGCGCACACGATGT
GCGATGGGTGCGGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCAACAAACCTCGAGAACTCA
CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAA
TGGGGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
GTGCATGCAAACAAAAATACAAGGATCACGTACACCAAGTTTGGGGCCAAAAATCCTTCTGAAAA
AATTTTAAAAAATCCCGAACCGCAAAAAGTTTAAAAAATCATGAAAAATAGAAAACGAGTCGTCA
TGCCATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGCC
ATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGC
GCATCCCGTCCCTCTGGCCGGCGTAGTGGCCGCTCCCGCCTGCCCGCCCGCTCATTTCATCGGTT
GGCTTAGGCATACGGAGCTCATTCCCAGTCTAAGATCGAACTGGACCAAGGGTTACGGTAGCAAG
ATTGATAGTACACAAAGAGGGACCCGATCGATCCCTGGCTTGCGCATCCCACCCCTCTGGCAGAC
TGAGCGCCCATACGCTCGTTCTGTGGGTTGACTGAGGCATATGGAGTTCATTCCCAGTC
Found at i:16029739 original size:409 final size:405
Alignment explanation
Indices: 16028970--16030183 Score: 1399
Period size: 409 Copynumber: 2.9 Consensus size: 405
16028960 ATTCCCAGTC
* * * *
16028970 TAGGCATACAGAGTTCATTCTCAGTCTAAGATCGGACTCGATCGAGGGTTACGGTAGCACATGCT
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC-CGACCGAGGGTTACGGCAGCACATGCT
* * *
16029035 GGGCTCGGGCATGTGCTGGTGCCACTTTTTTCTTCGCCAAGGCACCATCGTCGGAGCATCATCGG
65 GGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGAGGCACCATCGCCGGAGCATCATC-G
* * * *
16029100 AGAACCTGACCGACGACATTGGGGTTCTGTCAATCGGGGGGGTC-GGGGGTGTGCGCACACGATG
129 AGAACCTGACCGACGACATTGGGGTTCTGACGATC--GGGGG-CAGGGGGTGTGAGCACATGATG
* *
16029164 TGCGATGGGTGCGGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCAACAAACCTCGAGAACTC
191 TGCGATGGGTGCGGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
16029229 ACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
256 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAA
* * *
16029294 ATGGGGACACTTTTTTTAAAGGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTA
321 ATGGGGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTTTTA
*
16029359 GCTCGTTTCATGGGTTGACT
386 GCTCGTTTCATCGGTTGACT
* * * *
16029379 TAGGTATATGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTACGGCAG-AAATGCT
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-GACCGAGGGTTACGGCAGCACATGCT
* * * **
16029443 GGGCTCGGGCATGTGCTGGTGCCGCATTGTTCTTCACCGAGGCACCATCGCCGGAGCATCGCCAG
65 GGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGAGGCACCATCGCCGGAGCATCATC-G
* * * *
16029508 AGAACATGACCGACGGCATTGGGGTTCCGACGATCGGAGAGGCCAGGGGGTGTGTGCACATGATG
129 AGAACCTGACCGACGACATTGGGGTTCTGACGATCGG-G-GG-CAGGGGGTGTGAGCACATGATG
** *
16029573 TGCGATGAATG-GCGGTACTGGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
191 TGCGATGGGTGCG-GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * * *
16029637 CACACCCCCTTAAAGAGAATTTGGGATTTTACAGGTTTGCTGCCAGTAGTCATTAAAGTATTTGA
255 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGA
* * * **
16029702 AATAGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTCGCATCCCGCCGACATAGTGCT
320 AATGGGGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACT----T-----CGA-AT--TTTT
* * ******** * * *
16029767 CGCCCGCCCGCCCGCCCGCTTGTTTCGTCGGTTGGCT
373 AG-CTG---AATTTTTAGCTCGTTTCATCGGTTGACT
* *
16029804 TAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTTCGGCAGCACATG-T
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-GACCGAGGGTTACGGCAGCACATGCT
* * * *
16029868 GGGCTCGGGCATGTCCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGCCAGG-GCATCATCG
65 GGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGAGGCACCATCGCC-GGAGCATCATCG
* *
16029932 TAGAACCTGACCGGCGACATTGGGGTTCTGGCGATC--GGG-A-GGGGTG-GAAGCACATGATGT
129 -AGAACCTGACCGACGACATTGGGGTTCTGACGATCGGGGGCAGGGGGTGTG-AGCACATGATGT
* * *
16029992 TCGATGGGTGCTGGTACTTGGCCCTTATATT-GCCCCCTATCCCTCATCAAACCTCCAGAACTCA
192 GCGATGGGTGCGGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
16030056 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTGGCCATTAAAGTGTCTT-AA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-TTGAA
* * *
16030120 ATGGGGACACTTTTTTCAAAAGGTCACAAAATATTGTACACTTTGATTTTTTAGCTGAATTTTT
321 ATGGGGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTTTT
16030184 TTGTGCATGC
Statistics
Matches: 670, Mismatches: 108, Indels: 62
0.80 0.13 0.07
Matches are distributed among these distances:
404 2 0.00
405 3 0.00
406 2 0.00
407 2 0.00
408 99 0.15
409 221 0.33
413 2 0.00
417 126 0.19
418 47 0.07
419 2 0.00
421 5 0.01
422 3 0.00
424 1 0.00
425 149 0.22
426 6 0.01
ACGTcount: A:0.22, C:0.24, G:0.26, T:0.27
Consensus pattern (405 bp):
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGACCGAGGGTTACGGCAGCACATGCTG
GGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGAGGCACCATCGCCGGAGCATCATCGAG
AACCTGACCGACGACATTGGGGTTCTGACGATCGGGGGCAGGGGGTGTGAGCACATGATGTGCGA
TGGGTGCGGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGG
GACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTTTTAGCTCG
TTTCATCGGTTGACT
Found at i:16031416 original size:410 final size:409
Alignment explanation
Indices: 16030653--16031470 Score: 1199
Period size: 410 Copynumber: 2.0 Consensus size: 409
16030643 GCGCCCATAC
* * * * *
16030653 GCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCTCAGTCTCAGATCGGACTCGATCGA
1 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGACTCGACCGA
* * * * *
16030718 GGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACTTTTTTCTTCGCCAAGGCAC
66 GGGTTACGGCAGCAAATGCTGGGCTCGGGCATGTGCTGGTGCCACATTGTTCTTCACCAAGGCAC
** * *** * *
16030783 CATCGTTGGAGCATCGTCGAAGAACCTGACCGACGACATTGGGGTTCTGTCAATCGGGGGGGTCG
131 CATCGCCGGAGCATCGCCGAAGAACCTGACCGACGACATTGGGGTTCCAACAATCGGGGAGGCCG
** *
16030848 AGGGTGTGCGCACACGATGTGCGATGGGTGCGGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
196 AGGGTGTGCGCACACGATGTGCGATGAATGCGGGTACTGGGCCCTTATATTGGCCCCCTATCCCT
*
16030913 CATCAAATCTCGAGAACTCACACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGT
261 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGT
* * *
16030978 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTTAAAGGGTCACAAAATCTTGTACACTTCGA
326 AGCCATTAAAGTATCTGAAATAGGGACACTTTTTTCAAAGGGTCACAAAATCTTGTACACTTCGA
16031043 GTTTTTAGCTGAATTTTTA
391 GTTTTTAGCTGAATTTTTA
* * *
16031062 GCTCGTTTTGTGGGTTGACTTAGGTATACGGAGTTCATTCCCAATCTAAGATTGGAC-CAGACCG
1 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGACTC-GACCG
* * **
16031126 AGGGTTGCGGCAGCAAATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTGTTCTTCACCGGGGCA
65 AGGGTTACGGCAGCAAATGCTGGGCTCGGGCATGTGCTGGTGCCACATTGTTCTTCACCAAGGCA
* * * *
16031191 CCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCAACGATCGGGGAGGCC
130 CCATCGCCGGAGCATCGCCGAAGAACCTGACCGACGACATTGGGGTTCCAACAATCGGGGAGGCC
* * *
16031256 AGGGGGTGTGTGCACATGATGTGCGATGAATG-GTGGTACTGGGCCCTTATATTGGCCCCCTATC
195 -GAGGGTGTGCGCACACGATGTGCGATGAATGCG-GGTACTGGGCCCTTATATTGGCCCCCTATC
*
16031320 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
258 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCC
* * *
16031385 AGTAGTCATTAAAGTATTTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
323 AGTAGCCATTAAAGTATCTGAAATAGGGACACTTTTTTCAAAGGGTCACAAAATCTTGTACACTT
*
16031450 CGAGTTTTTAGCTGATTTTTT
388 CGAGTTTTTAGCTGAATTTTT
16031471 TTGTGCATGC
Statistics
Matches: 362, Mismatches: 44, Indels: 5
0.88 0.11 0.01
Matches are distributed among these distances:
408 1 0.00
409 164 0.45
410 197 0.54
ACGTcount: A:0.22, C:0.23, G:0.27, T:0.28
Consensus pattern (409 bp):
GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGACTCGACCGA
GGGTTACGGCAGCAAATGCTGGGCTCGGGCATGTGCTGGTGCCACATTGTTCTTCACCAAGGCAC
CATCGCCGGAGCATCGCCGAAGAACCTGACCGACGACATTGGGGTTCCAACAATCGGGGAGGCCG
AGGGTGTGCGCACACGATGTGCGATGAATGCGGGTACTGGGCCCTTATATTGGCCCCCTATCCCT
CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGT
AGCCATTAAAGTATCTGAAATAGGGACACTTTTTTCAAAGGGTCACAAAATCTTGTACACTTCGA
GTTTTTAGCTGAATTTTTA
Done.