Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 85 of 195
Found at i:16032445 original size:710 final size:710
Alignment explanation
Indices: 16031062--16032559 Score: 2128
Period size: 710 Copynumber: 2.1 Consensus size: 710
16031052 TGAATTTTTA
* * * * * *
16031062 GCTCGTTTTGTGGGTTGACTTAGGTATACGGAGTTCATTCCCAATCTAAGATTGGACCAGACCGA
1 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TCGACC-GACCGA
* * * * *
16031127 GGGTTGCGGCAGCAAATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTGTTCTTCACCGGGGCAC
64 GGGTTACAGCAGCAAATACTGGGCTAGGGCATGTGCTGGTGCCACATTGTTCTTCACCGGGGCAC
* * *
16031192 CATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCAACGATCGGGGAGGCCA
129 CATCGCCGGAGCATCGCCAGAGAACCTGACAGGCGACATTGGGGTTCCAACGATCGGGGAGGCCA
* *
16031257 GGGGGTGTGTGCACATGATGTGCGATGAATGGTGGTACTGGGCCCTTATATTGGCCCCCTATCCC
194 GGGGGTGTGCGCACATGATGTGCGATGAATGCTGGTACTGGGCCCTTATATTGGCCCCCTATCCC
*
16031322 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
259 TCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* *
16031387 TAGTCATTAAAGTATTTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
324 TAGCCATTAAAGTATCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * * *
16031452 AGTTTTTAGCTGATTTTTTTTGTGCATGCCAAAAAAAATTCAAGGATCCCGTCTACCCAGTTTGG
389 AGTTTTTAGCTGATTTTTTTTGTGCATGCAAAAAAAAATACAAGGATCACGTCTACCCAGTTAGG
* * * * *
16031517 GGCTAAAAATCCTTCTGAAAAAATTTTAAAAAATCTTGAACTGCAAAAATTTTCAAAAATCGTGA
454 GGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGA
* *
16031582 AAAATAGAAAACGAGTCGTCTTGGCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
519 AAAATAGAAAACGAGTCGTCTTGGCATGAAACTTCACGTGAAAGCCTAAGGGACCATTGTATGAA
* ** * *
16031647 TTTAGAAGCCATAAAAATGACATTGGCATGTGGAAATATGAAGATGTGCCTAAACCCACCTTCCA
584 TTTACAAGCCATAAAAATGACATTGGCATCAGGAAATAAGAAGATGTGCCTAAACCCACCTACCA
* *
16031712 CCCTATCGATCCACGGCTTGCGCATCCCG-C-C-GACGTAGTGCCCGCCCGCCCACCCGTCC
649 CCCTATCGATCCACGGCTTGCGCATCCCGTCGCTGACGTAGTACCCGCCCGCCCACCCGCCC
* *
16031771 GCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCAAAGATCAGACCGTACCGA
1 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GACCG-ACCGA
* * **
16031836 GGGTTACAGCAGCACATACTGGGCTAGGGCATGTGCTGGTGCCACATTTTTCTTCATGGGGGCAC
64 GGGTTACAGCAGCAAATACTGGGCTAGGGCATGTGCTGGTGCCACATTGTTCTTCACCGGGGCAC
* * ** * *
16031901 CATCGCCGGAGCATCGCCAGAGAACCTGATAGGCGACGTTGGGGTTCCGGCGATTGGGGGGGGCC
129 CATCGCCGGAGCATCGCCAGAGAACCTGACAGGCGACATTGGGGTTCCAACGA-TCGGGGAGGCC
* ** * *
16031966 GTGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCCTATC
193 -AGGGGGTGTGCGCACATGATGTGCGATGAATGCTGGTACTGGGCCCTTATATTGGCCCCCTATC
* *
16032031 CCTCATCAAATCTCAAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTC
257 CCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* * * * *
16032095 AGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCTCAAAATCTTTTACACTT
322 AGTAGCCATTAAAGTATCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
16032160 CGAGTTTTTAGCTGATTTTTTTTGTGCATGCAAAAAAAAATACAAGGATCACGTCTA-CCAGGTT
387 CGAGTTTTTAGCTGATTTTTTTTGTGCATGCAAAAAAAAATACAAGGATCACGTCTACCCA-GTT
* * *
16032224 AGGGGCCAAAACTCCTTCCGAAACAATTTTCAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCG
451 AGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCG
* *
16032289 TGAAAAATAGAAAATGAGTCGTCTTGTG-ATGAAACTTCATGTGAAAGCCTAAGGGACCATTGTA
516 TGAAAAATAGAAAACGAGTCGTCTTG-GCATGAAACTTCACGTGAAAGCCTAAGGGACCATTGTA
* *
16032353 TGAATTTTCAAGCCATAAAAATGGCATTGG-ATCAGAGAAATAAGAAGATGTGCCTAAACCCACC
580 TGAATTTACAAGCCATAAAAATGACATTGGCATCAG-GAAATAAGAAGATGTGCCTAAACCCACC
*
16032417 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTACCCGCCCGCCC
644 TACCACCCTATCGATCCACGGCTTGCGCATCCCG----TC--GCTGACGTAGTACCCGCCCGCCC
*
16032482 GCCCGCCC
703 ACCCGCCC
* * * *
16032490 GCTCGTTTTGTCGGTTGGCTTAGACATATGGAGTTCATTCCCAGTCTAAGATCGAACCAAACCGA
1 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG-ACC-GACCGA
16032555 GGGTT
64 GGGTT
16032560 GCGGTAGCAA
Statistics
Matches: 695, Mismatches: 76, Indels: 26
0.87 0.10 0.03
Matches are distributed among these distances:
708 2 0.00
709 161 0.23
710 363 0.52
711 81 0.12
715 1 0.00
718 2 0.00
719 85 0.12
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (710 bp):
GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGACCGACCGAGG
GTTACAGCAGCAAATACTGGGCTAGGGCATGTGCTGGTGCCACATTGTTCTTCACCGGGGCACCA
TCGCCGGAGCATCGCCAGAGAACCTGACAGGCGACATTGGGGTTCCAACGATCGGGGAGGCCAGG
GGGTGTGCGCACATGATGTGCGATGAATGCTGGTACTGGGCCCTTATATTGGCCCCCTATCCCTC
ATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
GCCATTAAAGTATCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
TTTTTAGCTGATTTTTTTTGTGCATGCAAAAAAAAATACAAGGATCACGTCTACCCAGTTAGGGG
CCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAA
AATAGAAAACGAGTCGTCTTGGCATGAAACTTCACGTGAAAGCCTAAGGGACCATTGTATGAATT
TACAAGCCATAAAAATGACATTGGCATCAGGAAATAAGAAGATGTGCCTAAACCCACCTACCACC
CTATCGATCCACGGCTTGCGCATCCCGTCGCTGACGTAGTACCCGCCCGCCCACCCGCCC
Found at i:16034161 original size:901 final size:899
Alignment explanation
Indices: 16031794--16034366 Score: 3739
Period size: 903 Copynumber: 2.8 Consensus size: 899
16031784 GTTGGCTTAG
* * * * * * * *
16031794 GCATACGGAGTTCATTCCCAGTCAAAGATCAGACCGTACCGAGGGTTACAGCAGCACATACTGGG
1 GCATACAGAGTTCATTCTCAGTCTAAGATCGGACCGGACCGAGGGTTACGGTAGCACATGCTGGG
* **
16031859 CTAGGGCATGTGCTGGTGCCACATTTTTCTTCATGGGGGCACCATCGCCGGAGCATCGCC-AGAG
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGA-AG
** * * * *
16031923 AACCTGATAGGCGACGTTGGGGTTCCGGCGATTGGGGGGGGCCGTGGGGGTGTGCGCACATGATG
130 AACCTGACCGGCGGCATTGGGGTTCCGTCGA-TCGGGGGGG-CG-GGGGGTGTGCGCACATGATG
* *
16031988 TGCGATGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAATCTCAAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
*
16032053 ACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * *
16032117 ATGGGGACATTTTTTTCAAATGGTCTCAAAATCTTTTACACTTCGAGTTTTTAGCTGATTTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGA-TTTTTT
* *
16032182 TGTGCATG-CAAAAAAAAATACAAGGATCACGTCTACCAGGTTAGGGGCCAAAACTCCTTCCGAA
386 TGTGCATGCCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * * *
16032246 ACAATTTTCAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGT
451 AAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
** * * *
16032311 CTTGTG-ATGAAACTTCATGTGAAAGCCTAAGGGACCATTGTATGAATTTTCAAGCCATAAAAAT
516 C-TG-GCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
16032375 GGCATTGG-ATCAGAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
579 GGCATTGGCA-CACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * *
16032439 TTGCGCATCCCGTCTCTCTGGCTGGCGTAGTACCCGCCCGCCCGCCCGCCCGCTCGTTTTGTCGG
643 TTGCGCATCCCGTCTCTCTGGC-GGCGTAGT-GCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGG
* * **
16032504 TTGGCTTAGACATATGGAGTTCATTCCCAGTCTAAGATC-GAACCAAACCGAGGGTTGCGGTAGC
706 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGGTAGC
* ** * *
16032568 AAGATCGGCAGCACGCAAGAGGGGAATGCGGTCAATCCCCAACTTGCGCATCCCACCCCTCTGGC
770 AAGATCAGCAGCACGCAAGAGGGGAACCCGATCAATCCCCAACTTGCGCATCCCACCCCTCAGGC
* * * *
16032633 CGACTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCGTAGGAGTTCATTCCCAATCTAA
835 CGACTGAGCGCCCGTAAGCTCGTTTCATGGGTTGACTTACGCATAGGAGTTCATTCCCAATCTAA
* *
16032698 GCATACAGAGTTCATTCTCAGTCTAAGATCGGACTGGACCGAGGGTTACGGTAGCACATGATGGG
1 GCATACAGAGTTCATTCTCAGTCTAAGATCGGACCGGACCGAGGGTTACGGTAGCACATGCTGGG
* * * * * *
16032763 CTCGGGCATGTGCTGGGGCCATATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGAAGA
* * *
16032828 ACCTAACCGGCGGCATTGGGGTTCCATCGATCTGGGGGGGCGGGGGCTGTGCGCACATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCCGTCGATC-GGGGGGGCGGGGGGTGTGCGCACATGATGTGC
16032893 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
16032958 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
16033023 GGGACACTTTTTTCAAACGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTG-ATTTTTTTGT
* * * *
16033088 GCATGCC-AACAAAAATACAGGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCGGAAAAA
389 GCATGCCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * * * *
16033152 ATTTGAGAAAATCTTGAAACGCAAAAAGTTTTAAAAATCAAGAAAAATAGAAAACAAGTCGTCTA
454 ATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT-
*
16033217 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG-A
518 GGCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
16033281 TTTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
583 -TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
*
16033346 GCATCCCGTCTCTCTGGTCGGCGTAATGCGCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGG
647 GCATCCCGTCTCTCTGG-CGGCGTAGTGC-CGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGG
* * * * *
16033411 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGTCTGGATCAAGGGTTGCGGCT-GCAGGA
710 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGG-TAGCAAGA
* * * *
16033475 TCAGCAGCACGC-AGAGGGGGACCCGATCGATCCCCAGCTTGCGCATCCCACCCTTCAGGCCGAC
774 TCAGCAGCACGCAAGAGGGGAACCCGATCAATCCCCAACTTGCGCATCCCACCCCTCAGGCCGAC
*
16033539 TGAGCGCCCGTAAGCTCGTTTCATGGGTTGACTTACGCATACGGAGTTCATTCCCAGTCTAA
839 TGAGCGCCCGTAAGCTCGTTTCATGGGTTGACTTACGCATA-GGAGTTCATTCCCAATCTAA
* *
16033601 GCATGCAGAGTTCATTCTCAGTCTAAGATTGGACCGGACCGAGGGTTACGGTAGCACATGCTGGG
1 GCATACAGAGTTCATTCTCAGTCTAAGATCGGACCGGACCGAGGGTTACGGTAGCACATGCTGGG
16033666 CTCGGGCATGTGCTGGTGCC-CATTTTTCTTCACCGGGGCACCATCG-CGGAGCATCGCCGAAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGAAGA
* * ** * *
16033729 ACCTGACCGACGGCTTTGCAGTTTCGTCGATCGGGGGGGTCGGGGGGTGTGCACACATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCCGTCGATCGGGGGGG-CGGGGGGTGTGCGCACATGATGTGC
*
16033794 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
* * * * * * *
16033859 CCCCCTTAAATAGCATTTCAGATTTTACAGGTTTGCTACCAGTGGCCATTACAGTGTCTTAACTG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
16033924 GGAACACTCTTTTCAAATGGTCACAAAATATTGTACACTTCAAGTTTTTAGCTGATTTTTTTGTG
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGATTTTTTTGTG
* * * * *
16033989 CATGCCAAAAAAAAATTCAAGGATCATGTCTACCAAGTTTGGGTCCAAAAATCCTTCTGAAAAAA
390 CATGCCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * *
16034054 TTTTAAAAAATCCCGAACCGCAAAAAGTTTGAAAAATTATGAAAAATAGAAAACGAGTCGTCATG
455 TTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC-TG
*
16034119 GCATGAAACTTCACATGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCAT
519 GCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
** * * *
16034184 TGGCACGTAGAAATATGAAGATGTTCCTAAACCCACCAACCACCCTATGGATCCACGGCTTGCGC
584 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *
16034249 ATCCCGTCCCTCTGGCCGGCGTAGTGCCCCCCTGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCT
649 ATCCCGTCTCTCTGG-CGGCGTAGTGCCGCCC-GCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCT
*
16034314 TAGGCATACGGAGTTCATTCGCAGTCTAAGATCAGACCGGACCGAGGGTTGCG
712 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCG
16034367 ACAGCACATG
Statistics
Matches: 1499, Mismatches: 151, Indels: 41
0.89 0.09 0.02
Matches are distributed among these distances:
900 28 0.02
901 564 0.38
902 195 0.13
903 566 0.38
904 146 0.10
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
GCATACAGAGTTCATTCTCAGTCTAAGATCGGACCGGACCGAGGGTTACGGTAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGAAGA
ACCTGACCGGCGGCATTGGGGTTCCGTCGATCGGGGGGGCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGATTTTTTTGTGC
ATGCCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTGGC
ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCGGCGTAGTGCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAAGATCAGCAG
CACGCAAGAGGGGAACCCGATCAATCCCCAACTTGCGCATCCCACCCCTCAGGCCGACTGAGCGC
CCGTAAGCTCGTTTCATGGGTTGACTTACGCATAGGAGTTCATTCCCAATCTAA
Found at i:16035520 original size:723 final size:717
Alignment explanation
Indices: 16033608--16036532 Score: 3908
Period size: 735 Copynumber: 4.0 Consensus size: 717
16033598 TAAGCATGCA
* * *
16033608 GAGTTCATTCTCAGTCTAAGATTGGACCGGACCGAGGGTTACGGTAGCACATGCTGGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACGGTAGCACATGCTGGGCTCGGGC
* * * * *
16033673 ATGTGCTGGTGCC-CATTTTTCTTCACCGGGGCACCATCGCGGAGCATCGCCGAAGAACCTGACC
66 ATGTGCTAGTGCCGCATTTTTCTTCACTGGGGCACCATCACCGAGCATCGCCGGAGAACCTGACC
* * * * * *
16033737 GACGGCTTTGCAGTTTCGTCGATCGGGGGGGTCGGGGGGTGTGCACACATGATGTGCGATGGGTG
131 GACGGCATTGCGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
16033802 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
195 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * * * * * * *
16033867 AATAGCATTTCAGATTTTACAGGTTTGCTACCAGTGGCCATTACAGTGTCTTAACTGGGAACACT
260 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * *
16033932 CTTTTCAAATGGTCACAAAATATTGTACACTTCAAGTTTTTAGCTG-ATTTTTTTGTGCATGCCA
325 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * *
16033996 AAAAAAAATTCAAGGATCATGTCTACCAAGTTTGGGTCCAAAAATCCTTCTGAAAAAATTTTAAA
390 AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAA
* * *
16034061 AAATCCCGAACCGCAAAAAGTTTGAAAAATTATGAAAAATAGAAAACGAGTCGTCA-TGGCATGA
455 AAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT-ATTGCCATGA
* *
16034125 AACTTCACATGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTGGCAC
519 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* * * *
16034190 GTAGAAATATGAAGATGTTCCTAAACCCACCAACCACCCTATGGATCCACGGCTTGCGCATCCCG
584 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
*
16034255 TCCCTCTGGCCGGCGTAGTGCCC-CCCTGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGC
649 TCTCTCTGGCCGGCGTAGTGCCCGCCC-GCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGC
16034319 ATACG
713 ATACG
* * * * **
16034324 GAGTTCATTCGCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACGGTAGCACATGCTGGGCTCGGGC
* * * * *
16034389 ATGTGCTGGTGCCGTATTTTTCTTCGTCAGGGTG--CCATCACCTGAGCATCGTCGGAGAACCTG
66 ATGTGCTAGTGCCGCATTTTTCTTC-ACTGGG-GCACCATCACC-GAGCATCGCCGGAGAACCTG
* * * * * *
16034452 AACGGCGGCTTTGCGGTTCCGATGATTGGAGGGGCCGGGGGGTGTACGCACATGATGTGCGATGG
128 ACCGACGGCATTGCGGTTCCGACGATCGG-GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
*
16034517 GTACTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
192 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * * * *
16034581 TCAAACAGCATTTGAGATTTTATAGGCTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGAC
257 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * * *
16034646 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGACTTTTTAGCTGATTTTTTTTTTTGCAT
322 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-ATTTTTTTGTGCAT
* * * *
16034711 GCCAAAAAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAACACTCCTACCGAAAAAATTT
386 GCCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTT
* * * * * * *
16034776 TAAAAAAACTCGAGCCGTAAAAAGTTTTAAAAATCATGAAAAAGAGAAAATGAGTCGTATTGCCA
451 TAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTATTGCCA
16034841 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG-ATTTG
516 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA-TTG
* *
16034905 GCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGTAT
580 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
*
16034970 CCCGTCTCTCTGGCCAGCGTAGTGCCCGCCCGCCCCCCCGCCCGCTCGCTCGTTTCGTCGGTTGG
645 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG----CCCGCCCGCTCGCTCGTTTCGTCGGTTGG
16035035 CTTAGGCATACG
706 CTTAGGCATACG
* * * *
16035047 GTGTCCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTACGGTAGCACATGCTAGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACGGTAGCACATGCTGGGCTCGGGC
*
16035112 ATGTGCTAGTGCCGTATTTTTCTTCACTGGGGCACCATCACCGAGCATCGCCGGAGAACCTGACC
66 ATGTGCTAGTGCCGCATTTTTCTTCACTGGGGCACCATCACCGAGCATCGCCGGAGAACCTGACC
* *
16035177 GACGGCATTGGGGTTCCCGGCGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGG
131 GACGGCATTGCGGTT-CCGACGATCG-GGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGG
* ** *
16035242 TGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCATGCTCCCT
193 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * *
16035307 TAAAGAGCATTTGATATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAATGAGGACA
258 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * * *
16035372 CTTTTTCCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAACTGTTTTGTGCTTGC
323 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * *
16035437 C-AAAAAAAATACAAGGATCACGTTTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTA
388 CAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTA
* * * * *
16035501 AAAAATCTCGAATCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
453 AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTATTGCCATG
*
16035566 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATCAAAATGGCATTGGCA
518 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * *
16035631 CGTAGAAATATGAAGATGTGCCTAAACGCACCTACCACCCTATCGATCCACGGCTTGCACATCCC
583 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * *
16035696 GTCTCTCTGGCCGGCGTAGTGCCCGTCCGCCCG--C-C-CACTCGTTTCGCCGGTTGGCTTAGGC
648 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGC
16035757 ATACG
713 ATACG
* * *
16035762 GAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTATGTGCTC-CGGTATGTGCTAGTG
1 GAGTTCATTCCCAGTCTAAG-AT-CG--G---A---CC-G---G-AC-CAAGG---GT--TA-CG
* * * * *
16035826 CGCAGCAAATACTGGGCTCCGGTATGTGCTAGTG-CGCCATTTTTCTTCATCT-GGGCACCATCA
44 -GTAGCACATGCTGGGCTCGGGCATGTGCTAGTGCCG-CATTTTTCTTCA-CTGGGGCACCATCA
* * * ** **
16035889 TCGGAGCATCGCCGGAGAACCAGACAGGTGGCATTTAGGTTCCGACGATCGGGGGGACCGGGGGG
106 -CCGAGCATCGCCGGAGAACCTGACCGACGGCATTGCGGTTCCGACGATCGGGGGG-CCGGGGGG
** *
16035954 -GTGCGCACATGATGTGCGATGGGTTATGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCGTC
169 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * * * *
16036018 AAACCTCGAGAAATCACACCCCCTTAAAGAGCATTTGAAATTTTCCCGATTTGCTGCCAGTAGCC
234 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * * *
16036083 ATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTGTACACTTTGGGTTT
299 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* *
16036148 TTAGCTGAATTTTTTTGTGCATGCC-AATAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCC
364 TTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * *
16036212 AAAAATCCTTCCGAAAAAATTTTAATAAATCCCAAACCACAAAAACTTTCAAAAATCATGAAAAA
429 AAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAA
*
16036277 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
494 TAGAAAACGAGTCGTATTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
*
16036342 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
559 CAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* ** *
16036407 ATCGATCCACGGCTTGCGTATCCCGTCTCTCTAACCGGCGTAGTACCCGCCCGCCCGCCCG-TCC
624 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCT-C
* * *
16036471 GCTCATTTCGTAGATTGGCTTAGGCATACG
688 GCTCGTTTCGTCGGTTGGCTTAGGCATACG
* *
16036501 GTGTTCATTCCCAGTCTAAGATCAGACCGGAC
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGAC
16036533 TGAGGGTTGC
Statistics
Matches: 1946, Mismatches: 210, Indels: 98
0.86 0.09 0.04
Matches are distributed among these distances:
715 47 0.02
716 75 0.04
717 156 0.08
718 101 0.05
719 274 0.14
720 3 0.00
721 1 0.00
722 38 0.02
723 405 0.21
724 67 0.03
725 141 0.07
726 1 0.00
728 1 0.00
729 3 0.00
730 3 0.00
731 1 0.00
732 1 0.00
733 2 0.00
735 468 0.24
736 14 0.01
737 62 0.03
738 37 0.02
739 45 0.02
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (717 bp):
GAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACGGTAGCACATGCTGGGCTCGGGC
ATGTGCTAGTGCCGCATTTTTCTTCACTGGGGCACCATCACCGAGCATCGCCGGAGAACCTGACC
GACGGCATTGCGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAA
AATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTATTGCCATGAAA
CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
TCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATA
CG
Found at i:16037563 original size:26 final size:26
Alignment explanation
Indices: 16037527--16037579 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16037517 GTTGACTTAG
16037527 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
*
16037553 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
16037579 G
1 G
16037580 ATCAAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:16038456 original size:26 final size:26
Alignment explanation
Indices: 16038420--16038469 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
16038410 GTTGACTTAG
*
16038420 GCATATGGAGTTCATTCCCAGTCTGA
1 GCATAGGGAGTTCATTCCCAGTCTGA
16038446 GCATAGGGAGTTCATTCCCAGTCT
1 GCATAGGGAGTTCATTCCCAGTCT
16038470 AAGATCGGAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.22, C:0.24, G:0.24, T:0.30
Consensus pattern (26 bp):
GCATAGGGAGTTCATTCCCAGTCTGA
Found at i:16039080 original size:898 final size:897
Alignment explanation
Indices: 16035723--16040104 Score: 5206
Period size: 898 Copynumber: 4.9 Consensus size: 897
16035713 AGTGCCCGTC
* * ** *
16035723 CGCCCGCCCACTCGTTTCGCCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * ** * * **** ** * * * * *
16035788 AAGTTCATTCCCAGTATGTGCTCCGGTATGTGCTA--G-TGCG-CAGCAAATACTGGGCTCCGGT
66 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGC
* * * * *
16035849 ATGTGCTAGTG-CGCCATTTTTCTTCATCTGGGCACCATCATCGGAGCATCGCCGGAGAACCAGA
131 ATGTGCTGGTGCCG-CATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAA-C---
* ** *
16035913 CAGGTGGCATTTAGGTTCCGACGATCGGGGGGACCGGGGGG-GTGCGCACATGATGTGCGATGGG
191 C-GGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
** * *
16035977 TTATGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCGTCAAACCTCGAGAAATCACACCCCCT
255 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * * *
16036042 TAAAGAGCATTTGAAATTTTCCCGATTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACA
320 TAAAGAGCATTTGAGATTTTACCGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
*
16036107 CTTTTTTCAAACGGTCACAAAATCTTGTACACTTTGGGTTTTTAGCTGAATTTTTTTGTGCATGC
385 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGGGTTTTTAGCTGAATTTTTTTGTGCATGC
* * *
16036172 CAATAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAA
450 CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* * * *
16036237 TAAATCCCAAACCACAAAAACTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
515 AAAATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
16036302 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
580 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* *
16036367 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGTATCCCG
645 GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * *
16036432 TCTCTCTAACCGGCGTAGTACCCGCCCGCCCGCCCGTCCGCTCATTTCGTAGATTGGCTTAGGCA
710 TCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCGCCC-TCCGCTCATTTCGTCGATTGGCTTAGGCA
* * * * * **
16036497 TACGGTGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAACAGGATCGGTAGCA
774 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGGTAACAGGATCGACAGCA
* * *
16036562 CGTAGAGAGGGACCCGACTGATCCCCGACTTGTGCATCCCG-----C---CC-G-T---
839 CGTAGAGGGGGACCCGACTGATCCCTGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * * *
16036608 -------ACGCTCGTTTCGTGTGTTAACTTAGGCGTATGGAGTTCATTCCAAGTCTAAGCATACG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * * * * *
16036666 GAATTCATTCCCAGTCTAAGATCGGACCGGACAGAGGGTTGCGGCGGCACATGCTAGGCTCGGAC
66 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGC
* * * * *
16036731 ATGTGCTGGTGCCCCATTTTTCTTCGTCCGGGCACCATCGTCGAAACATCACCGAAGAACCTGAT
131 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACC-G--
* * *
16036796 CGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCACACATGATGTGTGATGGG
193 -G-CGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGG
* *
16036861 TGCTGGTACTT-GCCCTTATATTGGCCCCCTATCCCTCATGAAACCTCGAGAACTCATACCCCCT
255 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
*
16036925 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
320 TAAAGAGCATTTGAGATTTTACCGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * * * * **
16036990 CTTTTTTCAAATGGTCACAAAATCTTGTACAGTTCGAGTTTTTACCTGAATTGTTTTGTGCACAC
385 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGGGTTTTTAGCTGAATTTTTTTGTGCATGC
* * *
16037055 CAATAAAAATACAAGGATCACGTCTACCACGTTTGGGGCCAAAAATCCTTCCTGAAAAAATTTTA
450 CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-GAAAAAATTTTA
* *
16037120 AAAAATCTCGCA-CAGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
514 AAAAATCCCGAACCA-CAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
* * *
16037184 GAAACTTCACGTGAAGGCTTCAGGGACCATTATATCAATTTACAAGCCATAAAAATGGCATTGGC
578 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* ** *
16037249 AAGTAGAAATATGAAGAACTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
643 ATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * *
16037314 CGTCTCTC--GCCGGCATAGT----GCCTGCCCG--CT-CGCTCGTTTCATCGGTTGGCTTAGGC
708 CGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCGCCCTCCGCTCATTTCGTCGATTGGCTTAGGC
* * * ** * * * *
16037370 ATACAGAGTTCATTTCCAGTCTAAGATCAGACCGGATTGAAGGTTGGGGTAGCAGGATTGACAGC
773 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGGTAACAGGATCGACAGC
* * *
16037435 ACGTAGAGGGGGACCCAACTGATCCCTGGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAG
838 ACGTAGAGGGGGACCCGACTGATCCCTGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* **
16037495 CGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAAGCATACG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * *
16037560 AAGTTCATTCCCAGTCTAAGATCAAACCGGACCGACGGTTACGACAGCACATGCTGGGCTCGGGC
66 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGC
* ** * * * *
16037625 TTGTGCTGGTGCCGCATTTTTCTTCACCGGGGTAGCATCGTCGGAG---CACC--TG-ACCGACG
131 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCGGCG
* *** *
16037684 ACATTGGGGTTCCGACGATCGGGTGCAACGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
196 GCATTGGGGTTCCGACGATCGGG-GGGGC-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * * * **
16037749 GGTACTTGGCCCTTATATTAGTCCCCTATCCCTCCTCAAACCTCTAGAACTTGCACCCCCTTAAA
259 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
16037814 GAGCATTTGAAATTTTTCCGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
324 GAGCATTTGAGATTTTACCGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* *
16037879 TTTCAAATGGTCACAAAATCTTGTACACTTCGGGTTTTTAGATGAATTTTTTTGTGCATGCC-AA
389 TTTCAAATGGTCACAAAATCTTGTACACTTTGGGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
* * * *
16037943 AAAAATACAAGGATCACATCTACCAAGTTTGGGGCTAAAACTCTTTCCAAAAAAATTTTAAAAAA
454 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* ** * * *
16038008 TCCAGAACTGCAAAAACTTTCAAAAATCGTGAAAAATATAAAACGAGTAGTCTTGCCATGAAACT
519 TCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
*
16038073 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
584 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAG
* * *
16038138 AAATAAGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCACGGCTTGCGCATCCTGTCTC
649 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * * * * *
16038203 TCTGGCTGGCGTAGTGCCTGCCCGCCCGCCCTCCCGCTCGTTCCGTCGATTGGCTTAGACATATG
714 TCTAGCCGGCGTAGTGCCCGCCCGCCCGCCCT-CCGCTCATTTCGTCGATTGGCTTAGGCATACG
* * * * * * * * *
16038268 GAGTTCATTCTCGGTATATGATCAGATCGAACCGAGGGTTGTGGTAACAGGATTGGCAGCATGCA
778 GAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGGTAACAGGATCGACAGCACGTA
** * * *
16038333 GAGGGGGACCCAGAC-GAT-TTTCGACTTGCGCATCCCGCCCTTTTGGCCGGTTGAG
843 GAGGGGGACCC-GACTGATCCCT-GACTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * * *
16038388 CGTCCGCGCGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTGAGCATAGG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * *
16038453 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGATAGTACATGCTGGGCTCGGGC
66 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGC
* * * *
16038518 ATGTGCTGGTGCCGCATGTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCTGGAGAACCGGTG
131 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCGGCG
** *
16038583 GCATTTAGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGC
196 GCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
*
16038648 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAATCACACCCCC-TAAAGA
261 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* *
16038712 ACATTTGAGATTTTACCGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTT
326 GCATTTGAGATTTTACCGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* *
16038777 TCAAACGGTCACAAAATCTTGTACACTTTGGGTTTTTAGCTGAATTTTTTTGTACATGCCAAAAA
391 TCAAATGGTCACAAAATCTTGTACACTTTGGGTTTTTAGCTGAATTTTTTTGTGCATGCC-AAAA
* ** *
16038842 AAAATACAAGGATCACGTCCACCAAGTTTGGAACCAAAACTCCTTCCAAAAAAATTTTAAAAAAT
455 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* * * *
16038907 CCCGAACCACAAAAAGTTTCAAAAATCGTAAAAAATAAAAAACGGGTCATCTTGCCATGAAACTT
520 CCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * *
16038972 CACGTGAAGGCTTAAGGGACCATTGTATTAATTTACAAGCAATAAAAATGGCATTGGAATGTAGA
585 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGA
* * * *
16039037 ATTATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTACGCATCCTGTCTCT
650 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * * * * *
16039102 CTGGCCGGTGTAGTACCCGTCCGCCCGCCCACCCGCTCATTTCGTCGGTTGGCTTAGGCATACGG
715 CTAGCCGGCGTAGTGCCCGCCCGCCCGCCC-TCCGCTCATTTCGTCGATTGGCTTAGGCATACGG
* ** * * **
16039167 AGTTCATTCCCAATCTAAGATTGGACC-AGACCGTGGTTTGTGGTAGTAGGATCGACAGCACGTA
779 AGTTCATTCCCAGTCTAAGATCAGACCGA-ACCGAGGGTTGTGGTAACAGGATCGACAGCACGTA
* * * * *
16039231 GAGGGGGACCCGA-TCGATCTCTGGCTTGTGCATCCCACCCCTCTGCCCGGCTGAG
843 GAGGGGGACCCGACT-GATCCCTGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* *
16039286 CGCCCGCACGCTCGTTTCGTGGTTTGACTTAGGCACACGGAGTTCATTCCCAGTCTAAGCATACG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * * * *
16039351 GAGTTCATTCCCAGTCTAAGATCATATCGGACCGATGGTTGCGGCAGCATATGCTGGTCTCGGGC
66 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGC
* * * *
16039416 ATG-GCTGTGCTGTGGCCGCCATTTTTTTTCGTCCGGGGCTACCATCGCCGG-GCATCACAGGGG
131 ATGTGC--TG--GT-GCCG-CATTTTTCTTCGT-CGGGGC-ACCATCGTCGGAGCATCACCGGAG
* * * *
16039479 AACCTGACCGGCGGCAGTGGGGTTCCAATGACTC-AGGGGGCCAGGGGGTGTGTG-GCACATGAT
188 -A----ACCGGCGGCATTGGGGTTCCGACGA-TCGGGGGGGCC-GGGGG-GTGTGCGCACATGAT
* * *
16039542 GTGGGATGGGTTGCTGGTAC-T-GCCTTTATTTTTGGCCCCCTATCCCTCATCAAACCTCGA-AA
245 GTGCGATGGG-TGCTGGTACTTGGCCCTTA-TATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* *
16039604 CTGACCACCCCCTTAAAG-GCA-TTGACGATCTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
308 CTCA-CACCCCCTTAAAGAGCATTTGA-GAT-TTTACCGGTTTGCTGCCAGTAGCCATTAAAGTG
* * * * *
16039667 TCTAAAATGGGGACACTTTTTTGAATGATGGTCAC-AAATCTT-TGACACTTTCGAGTTGTTATC
370 TCTGAAATGGGGACACTTTTTTCAA--ATGGTCACAAAATCTTGT-ACACTTT-GGGTTTTTAGC
16039730 TGAA--TTTTTGTGCATGCCAAAAAAAATACATAGGATCACCGTCTACCAAGTTTGGCGGCCAAA
431 TGAATTTTTTTGTGCATGCCAAAAAAAATACA-AGGATCA-CGTCTACCAAGTTTGG-GGCCAAA
* * * * * * * *
16039793 TACTCCTTCTGACAAAATTTCAAAAAATCCCAAACCGCAAAAAGTTTTAAAAATCATGAAATATA
493 -ACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATA
*
16039858 GAAAACGAGTCGTCTTGCCATGAAACTTAACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
557 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
** *
16039923 AGCCATAAAAATGGCA-TGGCACATAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
622 AGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * *
16039987 CAATCCACGGCTTGCGCATCCCGTCTCTCTAGTCGGCGAAGT--------GCCCG--C-CCGCTC
687 CGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCGCCCTCCGCTC
* * *
16040041 ATTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAATCTAAGATC-GAACCGAACCGAGGG
752 ATTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGAACCGAGGG
16040105 CTGCAGCAGC
Statistics
Matches: 2990, Mismatches: 413, Indels: 172
0.84 0.12 0.05
Matches are distributed among these distances:
874 113 0.04
875 1 0.00
876 1 0.00
878 78 0.03
879 1 0.00
880 1 0.00
881 6 0.00
882 98 0.03
883 442 0.15
884 312 0.10
885 175 0.06
887 1 0.00
888 3 0.00
889 9 0.00
891 6 0.00
892 1 0.00
893 271 0.09
894 144 0.05
896 125 0.04
897 91 0.03
898 497 0.17
899 29 0.01
900 1 0.00
901 64 0.02
902 5 0.00
903 12 0.00
904 15 0.01
905 16 0.01
909 40 0.01
910 80 0.03
911 93 0.03
912 29 0.01
913 101 0.03
914 129 0.04
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (897 bp):
CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGC
ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCGGCG
GCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
GCATTTGAGATTTTACCGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
TCAAATGGTCACAAAATCTTGTACACTTTGGGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
CCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAA
ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
TAGCCGGCGTAGTGCCCGCCCGCCCGCCCTCCGCTCATTTCGTCGATTGGCTTAGGCATACGGAG
TTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGGTAACAGGATCGACAGCACGTAGAG
GGGGACCCGACTGATCCCTGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
Found at i:16040970 original size:26 final size:26
Alignment explanation
Indices: 16040934--16040984 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
16040924 TCACTTAGGC
16040934 ATACAGAGTTCATTCCCAGTCTAAGT
1 ATACAGAGTTCATTCCCAGTCTAAGT
*
16040960 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
16040985 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGT
Found at i:16041951 original size:590 final size:589
Alignment explanation
Indices: 16040850--16041952 Score: 1701
Period size: 590 Copynumber: 1.9 Consensus size: 589
16040840 ATGCAGAAGT
* * * * *
16040850 GGACCCGATCGATCCCCGACTTGCGCATCCCGCCCTTCTGGCTGGCTAAACGCCCGCATGCTCGT
1 GGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGACTAAACGCCCGCACGCTCGT
* * *
16040915 TTCGTGGGTTCACTTAGGCATACAGAGTTCATTCCCAGTCTAAGTATACGGAGTTCATTCCCAGT
66 TTCGTGGGTTCACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGCTCATTCCCAGT
* * **
16040980 CTAAGATCGGACCAGACCGAGGGTTCCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCAT
131 ATAAGATCGGACCAGACCGAGGGTTCCGGCAACACATGCTGGGCTCGAAAATGTGCTGGTGCCA-
* *** * * *
16041045 TTTTTTCTTTATCAGGGCACCATCGTTGGAGCATCGTCGGAGAATCTGACCGACAACATTGGGGT
195 TTTTTTCTTCATCAGGGCACCATCGTCAAAGCATCATCGAAGAACCTGACCGACAACATTGGGGT
16041110 TCCGGTGATCGGGAGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
260 TCCGGTGATCGGGAGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* *
16041175 TTATATTGGCCCCTATCCCTCATCAAACCTTAAGAACTCACACCGCCTTAAAGAGTATTTGAGAT
325 TTATATTGGCCCCTATCCCTCATCAAACCTCAAGAACTCACACCGCCTTAAAGAGCATTTGAGAT
16041240 TTTACAGGTTTGCTGCCAGTAGTTATTAAAGTGTCTAAAATGGGGGCACTTTTTTTGAATGGTCA
390 TTTACAGGTTTGCTGCCAGTAGTTATTAAAGTGTCTAAAATGGGGGCACTTTTTTTGAATGGTCA
** *
16041305 CAAAATCTTACACTTCAAGTTTTTAGCTGAATCTTTTTGTGCATGCCAATAAAAATACGGAGTTC
455 CAAAATCTTACACTTCAAGTTTTTAGCTGAATCTTTTTGCCCATGCCAACAAAAATACGGAGTTC
16041370 ATTCCTGGCCTAAGATCGGACTGGACCGAGGGTTACGGCATCGGGATCAGGATCGGTAGCACGTA
520 ATTCCTGGCCTAAGATCGGACTGGACCGAGGGTTACGGCATCGGGATCAGGATCGGTAGCACGTA
16041435 GAGGG
585 GAGGG
* * * * * *
16041440 GGACCTGACCGATCCCCGGCTTGCGCATCTCGCCCCTCTGTCCGACTGAGCGCCCGCACGCTCGT
1 GGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGACTAAACGCCCGCACGCTCGT
** * *
16041505 TTCGTGGGTTCACTTAGGCATATGGAGTTCATTCCCATTCTAAGCATACAGAGCTCATTCCTAGT
66 TTCGTGGGTTCACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGCTCATTCCCAGT
* * *
16041570 ATAAGATCGGATCGGACCGAGGGTTGCGGCAACACATGCTGGGCTCGAAAATGTGCTGGTGCTGC
131 ATAAGATCGGACCAGACCGAGGGTTCCGGCAACACATGCTGGGCTCGAAAATGTGCTGGTGC--C
* * **
16041635 A-TTTTTCTTCGTCGGGGCACCATCGTCAAAGCATCATCGAAGAACCTGACCGACGGCATTGGGG
194 ATTTTTTCTTCATCAGGGCACCATCGTCAAAGCATCATCGAAGAACCTGACCGACAACATTGGGG
16041699 TTCCGGTGATCGGG-GGGCC-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
259 TTCCGGTGATCGGGAGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
*
16041762 CTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACC-CCTTTAAAGAGCATTTGAG
324 CTTATATTGGCCCCTATCCCTCATCAAACCTCAAGAACTCACACCGCC-TTAAAGAGCATTTGAG
* *
16041826 ATTTTACAGGTTTGCTGCCAGTAGTTATTAAAGTGTCTGAAATGGGGGCACTTTTTTTGAATTGT
388 ATTTTACAGGTTTGCTGCCAGTAGTTATTAAAGTGTCTAAAATGGGGGCACTTTTTTTGAATGGT
* * *
16041891 CACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATGTTTTTGCCCATGCCAACAAAAATAC
453 CACAAAATC-T-TACACTTCAAGTTTTTAGCTGAATCTTTTTGCCCATGCCAACAAAAATAC
16041953 AAGGATCACA
Statistics
Matches: 461, Mismatches: 47, Indels: 10
0.89 0.09 0.02
Matches are distributed among these distances:
587 2 0.00
588 174 0.38
589 6 0.01
590 277 0.60
592 2 0.00
ACGTcount: A:0.22, C:0.25, G:0.26, T:0.27
Consensus pattern (589 bp):
GGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGACTAAACGCCCGCACGCTCGT
TTCGTGGGTTCACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGCTCATTCCCAGT
ATAAGATCGGACCAGACCGAGGGTTCCGGCAACACATGCTGGGCTCGAAAATGTGCTGGTGCCAT
TTTTTCTTCATCAGGGCACCATCGTCAAAGCATCATCGAAGAACCTGACCGACAACATTGGGGTT
CCGGTGATCGGGAGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
TATATTGGCCCCTATCCCTCATCAAACCTCAAGAACTCACACCGCCTTAAAGAGCATTTGAGATT
TTACAGGTTTGCTGCCAGTAGTTATTAAAGTGTCTAAAATGGGGGCACTTTTTTTGAATGGTCAC
AAAATCTTACACTTCAAGTTTTTAGCTGAATCTTTTTGCCCATGCCAACAAAAATACGGAGTTCA
TTCCTGGCCTAAGATCGGACTGGACCGAGGGTTACGGCATCGGGATCAGGATCGGTAGCACGTAG
AGGG
Found at i:16043352 original size:26 final size:26
Alignment explanation
Indices: 16043316--16043368 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16043306 GTTGACTTAG
16043316 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16043342 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16043368 G
1 G
16043369 ATCGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16043360 original size:898 final size:899
Alignment explanation
Indices: 16041359--16053261 Score: 10535
Period size: 896 Copynumber: 13.2 Consensus size: 899
16041349 GCCAATAAAA
** * * ** *
16041359 ATACGGAGTTCATTCCTGGCCTAAGATCGGACTGGACCGAGGGTTACGGCATCGGGATCAGGATC
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCA----G-T-AGGATC
* * * * * *
16041424 GGTAGCACGTAGAGGGGGACCTGACCGATCCCCGGCTTGCGCATCTCGCCCCTCTGTCCGACTGA
60 GGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * *
16041489 GCGCCCGCACGCTCGTTTCGTGGGTTCACTTAGGCATATGGAGTTCATTCCCATTCTAAGCATAC
125 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * * * * *
16041554 AGAGCTCATTCCTAGTATAAGATCGGA-TCGGACCGAGGGTTGCGGCAACACATGCTGGGCTCGA
190 GGAGTTCATTCCCAGTCTAAGATCGGACT-GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGG
** * * * ** ** *
16041618 AAATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCAAAGCATCATCGAAGAACCTG
254 GCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCATCGGAGCATCGCCGGAGAACCTG
*
16041683 ACCGACGGCATTGGGGTTCCGGTGATC-GGGGGGCC-GGGGGTGTGCGCACATGATGTGCGATGG
319 ACCGACGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
*
16041746 GTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCT
384 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
** *
16041810 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGTTATTAAAGTGTCTGAAATGGGGGC
449 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
** * * * **
16041875 ACTTTTTTTGAATTGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATGTTTTTGCCCATG
514 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * **
16041940 CCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGTCAAAA-ATCTTTCCAAAAAAATTTT
579 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTC-TTCTGAAAAAATTTT
* *
16042004 CAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG-CAT
643 AAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA-
16042068 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
707 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * *
16042133 CATGTAGAAATATGAAGATGTGACTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
772 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * *
16042198 CCATCTCTCTGGCCGGTGTAGTGCTCGCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGC
837 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGC
* * * * * * *
16042261 ATACGGAGTTCATTACCAGTCTAAGATCAGACCGGACGGAAGGTTACGGCAGTAGGATCGACAGT
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGTAGGATCGGCAGC
* ** * * * *
16042326 ACGCAAAGAAGGACCCGATCGATCCCCGGCTTCCGCATCCTGCCCCTCTGGCCGGCTGAGTGCCC
66 ACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* * * *
16042391 GTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGACTAAGCATATGAAGTT
131 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* *
16042456 CATTCCCAGTATAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCCGGGCTCGGGCATGTG
196 CATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* *
16042521 CTGGTGCCGCATTTTTCTTCACCGGGGCACCATCATCGGAGCATCGCCGGAGAACCTGATCGACG
261 CTGGTGCCGCATTTTTCTTCATCGGGGCACCATCATCGGAGCATCGCCGGAGAACCTGACCGACG
* * *
16042586 GCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGGTTTACGCACATGATGTGTGATGGGTGCTG
326 GCATTGGGGTTCCGATGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
*** * * * *
16042651 GTACTTGAAACTTATATTGGCCCCCTGTCCCTCATAAAACCTTGAGAACTTACACCCCCTTAAAG
390 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * *
16042716 AGCTTTTCAGATTTTACAGGTTTGCTGCGAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
455 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * * *
16042781 TTCAAATGGTCACAAAGTCTTGTACACTTTGAGTTTTTAGCAGATTTTTTTTGTGCATGCCAACA
520 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* *
16042846 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATTATTCTGAAAAAATTTTAAAAAAT
585 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTCTGAAAAAATTTTAAAAAAT
** ** * *
16042911 CTCGAACCGTAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTTGTCTTGCCTTGAAACTT
650 CTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * * *
16042976 CACGTGAAGGCTTAAGGGA-CATT-TAGGAATTTACAAGCCAGAAAAATGGCATTGGCACGTAAA
715 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGA
* * *
16043039 AATATGAAGACGTGCCTAAACCCACCTACCACCATATCGATCCATGGCTTGCGCATCCCGTCTCT
780 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* *
16043104 CTAGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGAC
845 CTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGC
* ** * *
16043159 ATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCAACAGCAAGATCGGCAGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGTAGGATCGGCAGC
** * * * * * *
16043224 ATACAGAGGGGGACTCGACTGATCCCCAGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCACCG
66 ACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* * *
16043289 GAACGTTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
131 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
** * *
16043354 CATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGAGCATGTG
196 CATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* * * *
16043419 CTGGTGCAGCATTTTTCTTCA-CTGGGGCACCATCATCGGAGCATCGTCGGAGAACCTTACCGGC
261 CTGGTGCCGCATTTTTCTTCATC-GGGGCACCATCATCGGAGCATCGCCGGAGAACCTGACCGAC
* *
16043483 GGCATTGGGGTTCCGATGATCGAGGTGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
325 GGCATTGGGGTTCCGATGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * * * * * *
16043548 AGTACTTAGCCGTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTTACACCCCATTAAG
389 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* ** *
16043613 GAGCATTTGATATTTTACAGGTTCCCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
454 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
16043678 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
519 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* *
16043743 AAAAATACAAGGATCACGTCTACCAAGTTAGGGGCCAAAACTCCTT-TCGAAAAAATTTT--AAA
584 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTCT-GAAAAAATTTTAAAAA
* * *
16043805 ATCTTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCATGCCATGAAAC
648 ATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * *
16043870 TTCACGCGAAGCCTTAAGGGACCATTGTAGTGAAAATTTAC-AGCCATAAAAATGGCATTGGCAT
713 TTCACGTGAAGGCTTAAGGGACCATTGTA-TG--AATTTACAAGCCATAAAAATGGCATTGGCAC
* * *
16043934 GCAGAAATACGAAGATGTGCCTAAAACCCACCTACCACCCTATCAATCCAC-GCTTGTGCATCCC
775 GCAGAAATATGAAGATGTGCCT-AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * * *
16043998 ATCTCTCTAGCCGGCATAGTGCCCGCCCGCCCGTCCCGCTTGTTTCATCGGTTGGCTTAGAC
839 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-CCCGCTCGTTTCATCGGTTGGCTTAGGC
* * * * * * ** * *
16044060 ATACAGAGTTTCATTTCCCAATCTAA-ATCGGA-CAGATCAAGGGTTTGTAGTTAGCAAGATCGG
1 ATACGGAG-TTCA-TTCCCAGTCTAAGATCAGACCAGACCGAGGG-TTG-CGGCAGTAGGATCGG
* * * * * *
16044123 CAACACGC--AGTGGGA-CCGATCGATCCGCGAC-TGTGCATCCCTGCCCCTCT-GCCGGCTGAG
62 CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCC-GCCCCTCTGGCCGGCTGAG
* * * *
16044183 CACCCGAAACGCCTCATTTCGTTGGGTTGAGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGCA
126 CGCCCG-CACG-CTCGTTTCG-TGGGTTGA-CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * * ** *
16044248 TATTGGAGGTTTCATTCCCAATCTAGGATTCGAACCAGACCGAGGGTTGCAGCAGCACATGCT-G
187 TA-CGGA-G-TTCATTCCCAGTCTAAGA-TCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGG
* * **
16044312 GCTCGGGCAATGTGCTGGTGCCGTAATTTTTCTTCGTCGGGGCACCATTGTCGGAGCATCGCCGG
248 GCTCGGGC-ATGTGCTGGTGCCG-CATTTTTCTTCATCGGGGCACCATCATCGGAGCATCGCCGG
* * * * * *
16044377 AGAACTTTACC-AGTGGCATTGGGGTCCCGACGATC-GGGGGGCCGGGGGGTGTGCGTACATGAT
311 AGAACCTGACCGA-CGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGTGTGCGCACATGAT
* * *
16044440 GTGCGATGGGTGCGGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGCACT
375 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
*
16044505 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTTCTGCCAGTAGCCATTAAAGTGTCT-A
440 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
16044569 AATTGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTGGCTGAATTTT
505 AA-TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * * * * *
16044634 TTTTTGCGTGCCAACGAAAATACAAAGATCACGTCTACCAACTTTGGGGCCAAAACTCCTTCCGA
569 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTCTGA
** ** *
16044699 AAAAATTTTAAAAAATCTCGAACCCCAAAAAGTTTTGAAAATCATGAAAAATAGAAAAGGAGTCG
634 AAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
16044764 TCTTGCCATGAAACTT-ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA-
699 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
16044827 CGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA-CC-CCTACCACCCTATCGATCCACGGCT
764 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * ** * * *
16044890 TGCACATCCC-TCTCTCT--ACGGC-TAGTGCCCG---ACATGCCC-CTCATTTCGTCGGTTGCC
829 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGC
* *
16044947 GTAGAC
894 TTAGGC
** * ** *
16044953 A-ACGGAGTTCATTCCCAGTCTAAGAGT-AGACCAGACCGAGGGTCTGTAGCAGCAACACCGGCA
1 ATACGGAGTTCATTCCCAGTCTAAGA-TCAGACCAGACCGAGGGT-TGCGGCAGTAGGATCGGCA
* * *
16045016 GCACG-AGA--GGGACCCCGGTCACGATCCCCAGCTT---TAT-CCG-CCCTCTGGCCGGCTG-G
64 GCACGCAGAGGGGGA-CCC-GAC-CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * * *
16045072 -GCTCCGAATG-TC--TTCGTGGGATGAACTTAGGCTTACGGA--TCA-T-CCAATCTAAG-AT-
126 CGC-CCGCACGCTCGTTTCGTGGGTTG-ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
*
16045127 C--AG---------A--C------C--A---GACCGAGGGTT-CAGCAG-ACATTGCTCGGGCTC
189 CGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACA-TGCT-GGGCTC
* * * *
16045166 GGGCATGTGCTGGT-CCGTCATTTTTCTTCGTCGGGG-ACCATTGATCGAAAGCATCGCGGGAGA
252 GGGCATGTGCTGGTGCCG-CATTTTTCTTCATCGGGGCACCA-TCATCG-GAGCATCGCCGGAGA
* * * * * * *
16045229 A-TTTACCTG-TGGCATTGAGG-CCCGATGATC-GGGAGG--GGGGTGT-TG-GCACATGATGTG
314 ACCTGACC-GACGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT-
*
16045286 GCAGATGGGGTGCTGGTACTTGGCCCTTATATTTGGCCCCCTATCCCTCATCAAACGTCGAGAAC
377 GC-GAT-GGGTGCTGGTACTTGGCCCTTATA-TTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
16045351 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGTCATTAAAGTGTCTG
439 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
16045416 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTTCACTTCGAGTTTTTAGCTGAATTTT
504 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * * * *
16045481 TTTATGCATGCCAAAAAAAATTCAAGGATTACGTCTACCAAGTTTGGCGCCAAAACTCCTTCTGA
569 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTCTGA
* ** * *
16045546 AAAAATTTTAAAAAATCTTGAACCCCACAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
634 AAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
16045611 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
699 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
16045676 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCATCTACCACCCTATCGATTCACGGCT
764 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * *
16045741 TGCGCATCCCGTCTCTCTGGCCGACGTAGT----GCCCACCAGCCCACTTGTTTCATCGGTTGTC
829 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGC
16045802 TTAGGC
894 TTAGGC
** * * * * * *
16045808 ATACAAAGTTCATTCCCAGTCTGAGATCGGATCGGACCGAGGGTTACGGCAGTAGGATCGGTAGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGTAGGATCGGCAGC
* * * *
16045873 ACACAGAGGGGGACCCGACCGATCCCCGACTTGTGCATCCCGCCCCTCTGGCCGGCTGAGTGCCC
66 ACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
*
16045938 GCATGCTCGTTTCGT-GG--G---T-----T---GA---C-TT---A--C---GCATACGGAGTT
131 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
*
16045977 CATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTG
196 CATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* * * * *
16046042 C---T---G-----TTCTTCGTCAGGGCACCATCGTCGGAGCATCCCCGTAGAACCTGACCTG-C
261 CTGGTGCCGCATTTTTCTTCATCGGGGCACCATCATCGGAGCATCGCCGGAGAACCTGACC-GAC
* * *
16046095 GGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTG
325 GGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* * *
16046160 GTACTTGGCCCTTATATTGGTCCCTTATCCATCATCAAACCTCGAGAACTCACACCCCCTTAAAG
390 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* *
16046225 AGCATTTGAGATTTTATAGGTTTGCTGCCAGTATCCATTAAAGTGTCTGAAATGGGGACACTTTT
455 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * * *
16046290 TTCAAATGTTCAGAAAATCTTGTACACTTCAAGTTTTTAGCTGATTTTTTTTGTGCATGCCAACA
520 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* * * *
16046355 AAAATACAAGGATCGCGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTCAAAAAAT
585 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTCTGAAAAAATTTTAAAAAAT
* ** *
16046420 CCCGAACCGTAAAAAGTTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
650 CTCGAACCGTAAAAAG-TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
*
16046485 TCACGTGAAGGCTTAA-GGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCATC-CA
714 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-CGCA
* *
16046548 GAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACAGG-TTGTGCATCCCG--
778 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC-GGCTTGCGCATCCCGTC
* * * **
16046610 TCGCTGGCCGGCGTAGT----GCCCGCTCGCCCACTCGTTTTGTCGGTTGGCTTAGGC
842 TCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGC
*
16046664 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGGCAGTAGGATCGGCAGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGTAGGATCGGCAGC
* *** * * * * * * *
16046729 ACGTAG-GGGGGACCCGGTTGATCCCCGGTTTGTGCATCCCACCCCTCTGGTCGACTAAGTGCCC
66 ACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
16046793 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
131 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * ** * *
16046858 GATTCTCAGTCTAAGATCGGACCCGACCGAGGGTTGCGACAGCACATGCTGGGCTGGGGCATGTG
196 CATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
16046923 CTGGTGCCGCATTTTTCTTCATCGGGGCA-C--CAT-----CA---CCGGAGAACCTGACC-AGC
261 CTGGTGCCGCATTTTTCTTCATCGGGGCACCATCATCGGAGCATCGCCGGAGAACCTGACCGA-C
* * *
16046976 GGCAATGGTGTTCCGACGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGT-CGATGGGTGCT
325 GGCATTGGGGTTCCGATGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
*
16047040 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCTCGAGAACTCACACCCCCTTAAA
389 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * * * *
16047105 AAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTAAAATGCGGACACTTT
454 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
*
16047170 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAGTTTTTTTGTGCATGCCAAC
519 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* *
16047235 AAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAA-TTGCTTC-AAAAAAATTTT-AAAA
584 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTT-CTTCTGAAAAAATTTTAAAAA
* *
16047297 ATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCCAAGAAAC
648 ATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* *
16047362 TTCACGTGATGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACCCA
713 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
* *
16047427 GAAATATGAAGATGTACCTAAACCCATCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
778 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * *
16047492 CTCTGGCCGACGTAGTGCCTGCCCGTCCGCCCG-TCCGTTTATTTCATCGGTTAGCTTAGGC
843 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCT-CG----TTTCATCGGTTGGCTTAGGC
* * ** * *
16047553 ATACAGAGTTCATTCCCAGTCTAAGATCGGA-TGGACCGAGGGTTGTGGCAGTAGGATCGGTAGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGTAGGATCGGCAGC
* * ** * * *
16047617 ACGCAGAGGGGGA-CCGATCGATCCCCGACTTGTTCATCCCACCCCTCTGGCCGGCAGAGTGCCC
66 ACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
** * * * *
16047681 ATACGTTCGTTTCGTCGGTTGACTTAGTCATACAGAGTTCATTCCCAGTCTAAG-ATTGGACCAG
131 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA-T--A-C--
*** * ** * * **
16047745 ATGGAGGGTTGC-TATAGTAGGATCCACAGCA-CGGAAAGGGGGATCCGACCGATCCCCGGCTTA
190 --GGA--GTT-CAT-TCCCA-G-TCTA-AG-ATCGG--A-CTGGA-CCGA-GGGT-TGCGGC--A
** * ** ** * * * ****
16047808 -CGTATCCTGCCCCTATGGC-CG-GTTGAGCGCC-CACACGCTCGTTTCAT-GGGTTGACTTAGC
237 GCACATGCTG-GGCTCGGGCATGTGCTG-GTGCCGCA-TTTTTC--TTCATCGGG--G-C--A-C
* *** * * * *** * *
16047868 CAT-A-CAGAGTTCATTC-CCAGTCTAAGCAT-ACGGA-GTTCATTCCCAG-TCC-AAGATCAGA
291 CATCATCGGAG--CA-TCGCC-GGAGAA-CCTGACCGACG-GCATT-GGGGTTCCGATGATC-GG
*** * * * * * *
16047926 CCAGACCGAAGGTTGCG-GTG-GCACATGCTAG-GC--TTGG-GCAT-GTGCTGGTGCCGCATTT
348 GGGGGCCG--GG--GGGTGTGCGCACATGAT-GTGCGATGGGTGC-TGGTACTTG-GCC-C--TT
* * * * * * * * ** ** * **
16047984 TTCTTCACCGGGGCACC-ATCGCCGGGCATC--A-CTGGAGAACTTGA-TCGGCGGTAATG-GGG
403 ATATT-----GGCCCCCTATC-CC--TCATCAAACCTCGAGAAC-TCACACCCCCTTAAAGAGCA
* * * ** ** ** *** * * * * * * *
16048043 TTCCGGCGA--TCAGGGGGTCGGGGGGGTGTGTGCACATGATGTCGATGGGTGCTGGTACT-TGG
459 TT--TGAGATTTTA-CAGGTTTGCTGCCAGT-AGC-C---AT-T-AAAGTGT-CT-GAAATGGGG
* * ** ** * * * ** *** ***
16048105 -CCCTTATATTGGCCCCCTATCCCTCACCAAACCTTGAGAACTCACACCCCCTTAGAGAGCATTT
512 ACACTT-T-TT----TCAAAT-GGTCACAAAATCTT--GTA--CACTTCGAGTT-TTTAGC---T
** * * * * **
16048169 GAGATTTTACAGGTTTGCTGCCAATAGCC-ATTAAAGTGTCTGAAATGGGGA-CACTTTTTTCAA
562 GA-ATTTT-----TTTG-TG-C-AT-GCCAACAAAAAT-AC---AA---GGATCACGTCTACCAA
* * * * *** ** *** ***** ** * ***
16048232 --AT-GGTCGCAAAATCTTGTACACT-TCGAGTTTTTAGCTGAAT-T-TTTTTGT-GCATGCCAA
610 GTTTGGGGC-CAAAA-CTTCT--TCTGAAAAAATTTTA-AAAAATCTCGAACCGTAAAAAG-TTT
* ** * * * * * * * *** * *
16048290 CAAAAAT-A-CAAGGAT-CACATCTACTAAGT-TTGGGGCCA-AAAATCCTTC-CAAAAAAGTTG
669 CAAAAATCATGAAAAATAGAAAACGAGT-CGTCTT---GCCATGAAA--CTTCACGTGAAGGCT-
*** ** ** * ** ** * *
16048349 TAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGGGTCGTCTTGCCA
727 TAAGGGA-C-C--ATTGTATGAA-TTT-ACAAGCCAT-AAAAAT-G-GCATTGG-C-AC--G-C-
* * *** ** * * *** *
16048414 AGAAACTTCACGTGAAGGCTTAAGGGACC-AATGTATGAATTTACAAGCCATAAAAATCGCATTG
777 AGAAA--T-A--TGAA-G---ATGTG-CCTAA---ACCCACCTACCA-CCCTATCGATC-CA-CG
* *** *** * ** ** * *** *** * * *
16048478 GCACATAGAAATATGAAGATGTGC-CTAAACCCACCTACCACCCTATCGATCC-ACGGCTTGCGT
826 G--C-TTG-CGCATCCCG-TCT-CTCT-GGCCGGCGTAGTGCCCGCCCG-CCCGCCCGC-T-CGT
* ** *
16048541 ATCCTATCTCTTTGGCCCGCGTAGTGCCC
881 -TTC-ATC-GGTT-G---GCTTAG-G--C
* * * * ** * * * * * * * *
16048570 GTCCGTCCGTCCGCCTGCTCATT-TCA-TCGGTTGGCTTAG-GCATACGGA-GTTCATTC-CCAG
1 ATACG---G--AG--T--TCATTCCCAGTC--TAAGATCAGACCAGACCGAGGGT--TGCGGCAG
** * * ** * *** * *
16048630 T-CTA-AGATCAGACCAAACCGAGGGTTGCGGCAGTA-GGATCGGCAGCACGTAGGGGGGACCCG
53 TAGGATCG-GCAG--CACGCAGAGGGGGAC--CCG-ACCGATC--C--C-C-------GG---C-
* * * * * * *
16048692 GTTGATCCCCGGTTTGTGCATCCCACCCCTCTGGTCGACTAAGTGCCCGCACGCTCGTTTCGTGG
96 -TTG---CGCA---------TCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
* *
16048757 GTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCAAAGAT
148 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * **
16048822 CGGACTAGACCGAGGGTTGCGGCTGCACATGTTGGGCTCGGGCATGTGCTGGTAACGCATTTTTC
213 CGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
* * ** * ** * * * * *
16048887 TTCGTCAGGGCACCATTGTCGGTGCATCATCAGAGAACCTCACCGGCAGCATT-GGGTTTCGAGT
278 TTCATCGGGGCACCATCATCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGA-T
*
16048951 GATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCCGGTACTTGGCCCTTATA
342 GATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* * * *
16049016 TTGGCCCCCTATCCCTCAACGAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGACATTTTA
406 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* * *
16049081 CAAGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAA
471 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* *
16049146 ATCTTGAACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAGAATACAAGGATCA
536 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA-AATACAAGGATCA
* * * ** * *
16049210 TGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAAATTTTTTTAAAAATCCCGAACCGTAAAAA
600 CGTCTACCAAGTTTGGGGCCAAAACTTCTTCTGAAAAAATTTTAAAAAATCTCGAACCGTAAAAA
* *
16049275 GTTTCAAAAATCAAGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAA
665 GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
*
16049340 GGGACC-----AT--A---A-AA---AT-----T-GCATTGGCATGCAGAAATATGAAGATGTGC
730 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGC
* ** * *
16049385 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGTATCCTATCTCTTTGGCCCGCGTAGTG
795 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG
* * *
16049450 CCCGCCGTCCGTCCGCCTGCTCATTTCATCGGTTGGCTTAGGC
860 CCCG-C--CCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGC
* * * * *
16049493 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTCCAGCAGCAGGATTGGCAGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGTAGGATCGGCAGC
* * * * * *
16049558 ACACAAAGGGGGACCCGACCGATCCTCGGCTTGCGTATCCTGCCCCTCTGGCTGGCTGAGCGCCC
66 ACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* * *
16049623 GCACGCTCGTTTCGTGGCTTGACTTAGGCATACGGAGTTCATTCCCAGTATAAGCATACGGAGAT
131 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* ** * * * *
16049688 CATTCCCAGTCTAAGATCGGGCCAGACTGAGGGTTGTGGCGGCACATGCTGGGCTCAGGCATGTG
196 CATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* * ** *
16049753 CTGGTGCCACATTTTTCTTCGTCGGGGCACCAT--TGCAGGAGCAAT-ATCGAAGAACCTGACCG
261 CTGGTGCCGCATTTTTCTTCATCGGGGCACCATCAT-C-GGAGC-ATCGCCGGAGAACCTGACCG
* * * *
16049815 ACGGCATTGGGATTCCGACGATC-GGGGGGCCGGGGGGTGTGCTCATATGATGTGCGATGGGTGC
323 ACGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
*
16049879 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAATCTCGAGAACTCACACCCCCTTAA
388 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
16049944 AGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTT
453 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
*
16050009 TTTTCAAATGGTCA-ATAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTGCATGCCA
518 TTTTCAAATGGTCACA-AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * * *
16050073 ACAAAAATGCAAGGATCACGTGTACGAAGTTTGGGGCCAAAAC-TCCTCTCGACAAAATTTTAAA
582 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTCT-GAAAAAATTTTAAA
*
16050137 AAATCCCG-ACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
646 AAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * *
16050201 ACATCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACAATAAAAATGGCATTGGCACG
711 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* * *
16050266 CTGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCAT
776 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * *
16050331 CTCTCTGGCCGGCGTGGTGCCCGCCAGCCCACCCGCCCACTCGTTTCATCAGTTGGCTTAGGC
841 CTCTCTGGCCGGCGTAGTG--C-CC-GCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGC
* * * * * *
16050394 ATATGGAGTTCATTCCCAGTCTAAGATCTGACCGGATCGAGGGTTGCGGCAATAGCATCGGCAGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGTAGGATCGGCAGC
* * * ** * ** **
16050459 ACGCAGAGGGGGAACTGGCCGATCTTCAGCTTGCGCATCCCGTTCCTCTGGCCGGCTGAGCG-TT
66 ACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* * ** * * *
16050523 GACATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCTTAGTCTCAGCGTACAGAGT
131 G-CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* ** *
16050588 TCATTCCCAGTCTAAGATCAGA-TCGGACCGAGGGTTGCAACAGCACATGCTAGGCTCGGGCATG
195 TCATTCCCAGTCTAAGATCGGACT-GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* *
16050652 TGCTGGTGCCG---TATT-TT--T--------C-T--TC---G--T---CGGAGAACCTGATCGA
259 TGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCATCGGAGCATCGCCGGAGAACCTGACCGA
** * * * *
16050692 TTGCATAGAGGTTCCGAAGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGACGGGTGCT
324 CGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
*
16050756 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACATCCCCTTAAA
389 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
16050821 AAGCATTTGAGATTTTACCGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
454 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
** * * *
16050886 TTTCAAATGACCACAAAATCTTGTACACTTCGAGTTTTAAGCTGAA-TTTTTTGTGCGTGCCAAA
519 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * **
16050950 AAAAATTACAAGGATCATGTCTACCAAGGTTGGGGCCAAAACGCCTT-TCGAAAAAATTTTAAAA
584 AAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTCT-GAAAAAATTTTAAAA
* * * *
16051014 AATCTCGAACCGCAAAAAGTTTCCAAAATCATGAAAAATAGGAAACGAATCGTCTTGCCATGAAA
647 AATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
*
16051079 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAC
712 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
* *
16051144 AAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTC
777 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * *
16051209 TCTCTGGCCGGCGTAGT----ACCCGCCCGCCAGCTCCTTTCATCGGTTGGCTTAGGC
842 TCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGC
* * * *
16051263 ATACGGAGTTCATTCCCAGTCTAAGATTAGACCAAACTGAGGTTTGCGGCAGTAGGATCGGCAGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGTAGGATCGGCAGC
* * * * * * *
16051328 ACGCAAAGGGGAACCCGGCCGATCCCCGGCTTGCGTATCCCACCCCTCTGGTCAGCTGAGCGCCC
66 ACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* * *
16051393 GCACACTCGTTTTGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
131 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * * * * *
16051458 CATTCCCATTCTAAGATCGGACCGGACCGAGGGTTGTGACAGCACATGCTGGGCTTGGCCATGTG
196 CATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* * ** * ** * * *
16051523 ATGGTGCCTCATTTTTCTTCATCGACGTACCATCCCCGGAGCATCGTCAGAGAACCTGACCGGCG
261 CTGGTGCCGCATTTTTCTTCATCGGGGCACCATCATCGGAGCATCGCCGGAGAACCTGACCGACG
16051588 GCATTGGGGTTCCGACT-ATCGGGGGGGCCGGAGGGGTGTGCGCACATGATGTGCGATGGGTGCT
326 GCATTGGGGTTCCGA-TGATCGGGGGGGCCGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * *
16051652 GGTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCGCTTAAA
389 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
*
16051717 GAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
454 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * *
16051782 TTTCAAATGCTCACAAAATCTTGTACACTTCGAGTTTTAAGCTGAATTTTTTTGTACATGCCAA-
519 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * * *
16051846 AAAAACTACAAGGATCACATCTACCAAGCTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
584 AAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTCTGAAAAAATTTTAAAAA
* ** * *
16051911 ATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAAA
648 ATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* *
16051976 TTCACGTGAAGGCTTATGGGACCATTGTATGAATTTACAAGGCATAAAAATGGCATTGGCACGCA
713 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
* * *
16052041 GAAATATGAAGATGTGCCTAAACCCGCCTACCACCCTATCGATCCACGGCTTGCACATCCTGTCT
778 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * * *
16052106 CTCTAGCTGGCGTAGTGCCCGCCCGCCTGTCCGCCCGCCAGCTCGTTTCGTCGGTTTGCCTAGGC
843 CTCTGGCCGGCGTAGTGCCCGCCCG-C---CCG--C-CC-GCTCGTTTCATCGGTTGGCTTAGGC
* * * * * * * *
16052171 ATACGGAG-TCATTCCCAATCTAAGATTAGACCAAACTGATGTTTGCGGTAGTAGGATCGACAGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGTAGGATCGGCAGC
* * * * * * * *
16052235 ACGTAAAGGGGAACCCGGCCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCGTCTGAACGCCC
66 ACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* * *
16052300 GTACGCTCGTTTCGTGGCTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTT
131 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * * * *
16052365 CATTTCCAGTCTAAGATCGGACTGGACCAAGGGTTGCGGCAGTACATCCTGGGCTTGGGCATGTG
196 CATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* * * ** * * * * *
16052430 CTGGTGCCACATTTTTCTTCACCGAGGTGCCATCGTCAGAGCATCGTCGGAGAACCTGATCGGCG
261 CTGGTGCCGCATTTTTCTTCATCGGGGCACCATCATCGGAGCATCGCCGGAGAACCTGACCGACG
* * * *
16052495 GCATTGGGGTTCTGGCT-AT---------C-GGGGTTGTGCGCACATGATGTGTGATGGGTGCTG
326 GCATTGGGGTTC-CGATGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* *
16052549 GTACTTAGCCCTTATATTGGCCCCCTATCCGTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
390 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * * * * *
16052614 AACATTTGAGATTTAATAGGTTTGCTACCAGTAGCCATTAAAGTGTATGAAATAGGGACACTTTT
455 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * * *
16052679 TTCAAATAGCCACAAAATCTTGTACACATT-GAGTTTTTAGGTGAATTTTTTTGTGCATGCCAAA
520 TTCAAATGGTCACAAAATCTTGTACAC-TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * *
16052743 AAAAATACAGGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-AAAACAATTTAAAAAA
584 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTCTGAAAA-AATTTTAAAAA
* * * *
16052807 ATCCCGAACCGCAAAAAGTTTCAAAAATTATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAAC
648 ATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* *
16052872 TTCACGTGAAGGCTCAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACA
713 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
* * * *
16052937 AAAATATGAAGATGTGCCTAAACCCACATACCACCCTATCAATCCACAGCTTGCGCATCCC-TCT
778 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * ** * * *
16053001 CTCTGGCCGACATTCTGCCCGCCCACCCG--CGTCTCGTTTCGTTGGTTGGCTTAGGC
843 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG-CTCGTTTCATCGGTTGGCTTAGGC
***
16053057 ATACGGAGTTCATTCCCAGTCTAAGATCAGATTGGACCGAGGGTT---GC----GG-T----AGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGTAGGATCGGCAGC
* * * ** *
16053110 ACGCAGAGGGGGACCCGGCCGATCCTCGGCTTGCACATCCCGCCCCTCTGGGTGGCTGAGCACCC
66 ACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* **
16053175 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACAAAGTT
131 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* *
16053240 CATTTCCAGTCTACGATCGGAC
196 CATTCCCAGTCTAAGATCGGAC
16053262 CAGACCAAGG
Statistics
Matches: 9003, Mismatches: 1424, Indels: 1175
0.78 0.12 0.10
Matches are distributed among these distances:
841 1 0.00
842 2 0.00
843 11 0.00
844 5 0.00
845 11 0.00
846 24 0.00
847 301 0.03
848 103 0.01
849 72 0.01
850 11 0.00
851 33 0.00
852 9 0.00
854 11 0.00
855 125 0.01
856 178 0.02
857 16 0.00
858 345 0.04
859 91 0.01
860 24 0.00
861 13 0.00
862 17 0.00
863 3 0.00
864 7 0.00
866 1 0.00
867 27 0.00
868 8 0.00
869 257 0.03
870 1 0.00
872 4 0.00
873 5 0.00
874 1 0.00
875 160 0.02
876 287 0.03
877 193 0.02
878 65 0.01
879 132 0.01
880 95 0.01
881 629 0.07
882 34 0.00
883 215 0.02
884 20 0.00
885 16 0.00
886 35 0.00
887 31 0.00
888 128 0.01
889 65 0.01
890 26 0.00
891 33 0.00
892 36 0.00
893 21 0.00
894 43 0.00
895 45 0.00
896 1205 0.13
897 46 0.01
898 727 0.08
899 84 0.01
900 486 0.05
901 372 0.04
902 78 0.01
903 69 0.01
904 47 0.01
905 19 0.00
906 288 0.03
907 381 0.04
908 168 0.02
909 10 0.00
910 6 0.00
911 2 0.00
912 7 0.00
914 22 0.00
915 10 0.00
916 10 0.00
917 2 0.00
918 1 0.00
920 1 0.00
923 6 0.00
925 1 0.00
926 21 0.00
927 22 0.00
928 15 0.00
929 6 0.00
930 9 0.00
931 3 0.00
932 12 0.00
933 10 0.00
934 30 0.00
935 22 0.00
936 2 0.00
937 3 0.00
938 2 0.00
939 3 0.00
940 8 0.00
941 14 0.00
942 5 0.00
943 6 0.00
944 5 0.00
947 4 0.00
948 14 0.00
950 3 0.00
951 1 0.00
952 6 0.00
953 8 0.00
954 1 0.00
955 1 0.00
956 3 0.00
957 4 0.00
958 1 0.00
959 4 0.00
962 5 0.00
963 2 0.00
964 1 0.00
965 7 0.00
966 4 0.00
968 5 0.00
969 15 0.00
970 7 0.00
971 18 0.00
972 27 0.00
973 9 0.00
974 4 0.00
975 1 0.00
977 7 0.00
978 3 0.00
979 7 0.00
980 6 0.00
981 1 0.00
982 4 0.00
983 1 0.00
984 1 0.00
986 1 0.00
987 9 0.00
988 26 0.00
989 22 0.00
990 15 0.00
991 10 0.00
992 7 0.00
993 10 0.00
994 6 0.00
995 1 0.00
996 2 0.00
997 8 0.00
998 2 0.00
1000 7 0.00
1001 7 0.00
1002 7 0.00
1003 5 0.00
1005 1 0.00
1006 5 0.00
1007 9 0.00
1008 6 0.00
1009 19 0.00
1010 5 0.00
1011 13 0.00
1012 3 0.00
1014 5 0.00
1015 1 0.00
1016 5 0.00
1017 8 0.00
1018 8 0.00
1019 1 0.00
1020 3 0.00
1022 4 0.00
1023 1 0.00
1024 134 0.01
1025 210 0.02
1026 156 0.02
1027 352 0.04
1028 123 0.01
1029 132 0.01
1030 141 0.02
1031 157 0.02
1032 185 0.02
1033 131 0.01
1034 79 0.01
1035 92 0.01
1036 66 0.01
1037 58 0.01
1038 83 0.01
1039 103 0.01
1040 102 0.01
1041 57 0.01
1042 93 0.01
1043 105 0.01
1044 85 0.01
1045 119 0.01
1046 84 0.01
1047 79 0.01
1048 69 0.01
1049 51 0.01
1050 49 0.01
1051 59 0.01
1052 42 0.00
1053 40 0.00
1054 26 0.00
1055 38 0.00
1056 43 0.00
1057 42 0.00
1058 39 0.00
1059 104 0.01
1060 212 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGTAGGATCGGCAGC
ACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
CATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
CTGGTGCCGCATTTTTCTTCATCGGGGCACCATCATCGGAGCATCGCCGGAGAACCTGACCGACG
GCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTCTGAAAAAATTTTAAAAAATC
TCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAA
ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
TGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGC
Found at i:16046856 original size:26 final size:26
Alignment explanation
Indices: 16046820--16046872 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16046810 GTTGACTTAG
16046820 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
16046846 GCATACGGAGTTGATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16046872 G
1 G
16046873 ATCGGACCCG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16047860 original size:159 final size:157
Alignment explanation
Indices: 16047533--16047893 Score: 406
Period size: 159 Copynumber: 2.3 Consensus size: 157
16047523 CGTCCGTTTA
* **
16047533 TTTCATCGGTT-AGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGATGGACCGAGGGTT
1 TTTCATCGGTTGA-CTTAGCCATACAGAGTTCATTCCCAGTCTAAGATCGGACAGACCGAGGGTT
* *** * *
16047597 GTGGCAGTAGGATCGGTAGCACGCAGAGGGGGACCGATCGATCCCCGACTTGTTCATCCCACCCC
65 GTGACAGTAGGATCCACAGCACGCAAAGGGGGACCGACCGATCCCCGACTTGTTCATCCCACCCC
* * * *
16047662 TCTGGCCGGCAGAGTGCCCATACGTTCG
130 TATGGCCGGCAGAGCGCCCACACGCTCG
* * * **
16047690 TTTCGTCGGTTGACTTAGTCATACAGAGTTCATTCCCAGTCTAAGATTGGACCAGATGGAGGGTT
1 TTTCATCGGTTGACTTAGCCATACAGAGTTCATTCCCAGTCTAAGATCGGA-CAGACCGAGGGTT
* * * **
16047755 GCT-ATAGTAGGATCCACAGCACGGAAAGGGGGATCCGACCGATCCCCGGCTTACG-T-ATCCTG
65 G-TGACAGTAGGATCCACAGCACGCAAAGGGGGA-CCGACCGATCCCCGACTT--GTTCATCCCA
**
16047817 CCCCTATGGCCGGTTGAGCGCCCACACGCTCG
126 CCCCTATGGCCGGCAGAGCGCCCACACGCTCG
*
16047849 TTTCATGGGTTGACTTAGCCATACAGAGTTCATTCCCAGTCTAAG
1 TTTCATCGGTTGACTTAGCCATACAGAGTTCATTCCCAGTCTAAG
16047894 CATACGGAGT
Statistics
Matches: 171, Mismatches: 27, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
157 46 0.27
158 34 0.20
159 89 0.52
160 1 0.01
161 1 0.01
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.24
Consensus pattern (157 bp):
TTTCATCGGTTGACTTAGCCATACAGAGTTCATTCCCAGTCTAAGATCGGACAGACCGAGGGTTG
TGACAGTAGGATCCACAGCACGCAAAGGGGGACCGACCGATCCCCGACTTGTTCATCCCACCCCT
ATGGCCGGCAGAGCGCCCACACGCTCG
Found at i:16049690 original size:26 final size:26
Alignment explanation
Indices: 16049650--16049702 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16049640 CTTGACTTAG
*
16049650 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACGGAGATCATTCCCAGTATAA
*
16049676 GCATACGGAGATCATTCCCAGTCTAA
1 GCATACGGAGATCATTCCCAGTATAA
16049702 G
1 G
16049703 ATCGGGCCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGATCATTCCCAGTATAA
Found at i:16051456 original size:26 final size:26
Alignment explanation
Indices: 16051420--16051472 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16051410 GTTGACTTAG
*
16051420 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16051446 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16051472 G
1 G
16051473 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16052356 original size:26 final size:26
Alignment explanation
Indices: 16052327--16052379 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16052317 CTTGACTTAG
*
16052327 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
16052353 GCATACAGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16052379 G
1 G
16052380 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16053415 original size:185 final size:185
Alignment explanation
Indices: 16053103--16053459 Score: 529
Period size: 185 Copynumber: 1.9 Consensus size: 185
16053093 CCGAGGGTTG
* * **
16053103 CGGTAGCACGCAGAGGGGGACCCGGCCGATCCTCGGCTTGCACATCCCGCCCCTCTGGGTGGCTG
1 CGGTAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCACATCACGCCCCTCTGGCCGGCTG
* * *
16053168 AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATA
66 AGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATA
* * *
16053233 CAAAGTTCATTTCCAGTCTACGATCGGACCAGACCAAGGGTTACGGTAGTAGGAT
131 CAAAGTCCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTACGGTAGTAGGAT
* *
16053288 CGGTAGCACGCAGAGGGGGACCCGACCGATCC-CATG-TTAGCGCATCACGCCCCTCTGGCCGGC
1 CGGTAGCACGCAGAGGGGGACCCGACCGATCCTC-GGCTT-GCACATCACGCCCCTCTGGCCGGC
* * *
16053351 TGAGCGCCCGTACGCTCATTTCTTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCA
64 TGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCA
* *
16053416 TACAGAGTCCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT
129 TACAAAGTCCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTT
16053460 GCGGCAGCAC
Statistics
Matches: 153, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
184 3 0.02
185 150 0.98
ACGTcount: A:0.21, C:0.30, G:0.28, T:0.22
Consensus pattern (185 bp):
CGGTAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCACATCACGCCCCTCTGGCCGGCTG
AGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATA
CAAAGTCCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTACGGTAGTAGGAT
Found at i:16053423 original size:26 final size:26
Alignment explanation
Indices: 16053387--16053439 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16053377 GTTGACTTAG
*
16053387 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTCCATTCCCAGTCTAA
16053413 GCATACAGAGTCCATTCCCAGTCTAA
1 GCATACAGAGTCCATTCCCAGTCTAA
16053439 G
1 G
16053440 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTCCATTCCCAGTCTAA
Found at i:16056696 original size:26 final size:26
Alignment explanation
Indices: 16056666--16056718 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16056656 GTTAACTTAG
16056666 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
16056692 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
16056718 G
1 G
16056719 AGTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:16057533 original size:26 final size:26
Alignment explanation
Indices: 16057496--16057548 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16057486 GTTGACTTTG
*
16057496 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
16057522 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
16057548 G
1 G
16057549 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:16057568 original size:830 final size:832
Alignment explanation
Indices: 16055911--16057570 Score: 2378
Period size: 830 Copynumber: 2.0 Consensus size: 832
16055901 AGAGCATCAC
* * *
16055911 CGGAGAACCTGACCGGCGGCATTAGGGTTTCGACGATCGGAAGGGCCGGGGGAGGTGTGCGCACA
1 CGGAGAACCTGACAGGCGGCATTAGGGTTCCGACGATCGGAAGGGCCGGGGGAGGTGTACGCACA
* * *
16055976 TGATGTGCGATTGGTACTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAG
66 TAATGTGCGATTGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAG
* * * * * *
16056041 AACTCACACCCCTTTAAAGAGCATTTGAGATTTTAGAGGTTTGCTGCCAGTAGCCATTAATGTGT
131 AACTCACACCCCCTCAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGC
* *
16056106 TTAAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
196 CTAAAATGAGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* *
16056171 TTTTTTGGGCATGCCAACAAAAATACAAGGATTACGTCTACCAAGTTTGGGACCAAAACTCCTTC
261 TTTTTTGGGCATGCCAAAAAAAATACAAGGATGACGTCTACCAAGTTTGGGACCAAAACTCCTTC
* *
16056236 CAAAAAAATTTTAAAAGATCCCAAACCATAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAC
326 CAAAAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAC
* * *
16056301 TCATCTTGCCATGAAACCTCATGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAA
391 TCACCTTGCCATGAAACCTCACGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCACAAA
* * **
16056366 AATGGCATTGCAACGCAAATATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCATG
456 AATGGCATGGCAACGCAAATACATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACA
* * * **
16056431 GCTTGCGCTTCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCTACCCACCCTTCCGCTCATTTCGTC
521 GCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTACCCACCCACCCGCTCATTTCGTC
* * *
16056496 GGTTAGCTTAGGCATACGGAGTTCAATCCCAGTCTAAGATTGGAACGGGCCGAGGGTTACGGCAG
586 AGTTAGCTTAGGCATACGGAGTTCAATCCCAGTCTAAGATTGGAACGGACCGAGGGTTACGACAG
* * * * ** *
16056561 CAGGATCAGCATCACGCAGAGGGTGACTCGACCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGC
651 CAAGATCAGCAGCACGCAAAGGGTGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGC
* * *
16056626 CTGTTGAGTGCCCGCACGCTAATTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCCAATCTA
716 CGGTTGAGCGCCCACACGCTAATTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCCAATCTA
* *
16056691 AGCATATGGAGTTCATTCCCAGTCTAAGAGTGGACCGGACCGAGGGTTGCGG
781 AGCATACGAAGTTCATTCCCAGTCTAAGAGTGGACCGGACCGAGGGTTGCGG
* **
16056743 CGGAGAACCTGATCAGG-GGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGG-GGTGTACGCAC
1 CGGAGAACCTGA-CAGGCGGCATTAGGGTTCCGACGATCGGAAGGGCCGGGGGAGGTGTACGCAC
*
16056805 ATAATGTGCGA-TGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCA
65 ATAATGTGCGATTG-GTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCA
*
16056869 AGAACTCACACCCCCTCAAAGAGCATTTGAGATTTTACAGGTTTGCTGGCAATAGCCATTAAAGT
129 AGAACTCACACCCCCTCAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGT
* * *
16056934 GCCTGAAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGTTGA
194 GCCTAAAATGAGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
*
16056999 AGTTTTTTT-TGCATGCCAAAAAAAATACAAGGATCGA-GTCTACCAAGTTTGAGG-CCAAAACT
259 A-TTTTTTTGGGCATGCCAAAAAAAATACAAGGAT-GACGTCTACCAAGTTTG-GGACCAAAACT
* * * * **
16057061 CCTTCTAAAAAAATTTTAAAAAATCCCGAACCGCAAAACGTTTTGCAAATCATGAAAAATAGAAA
321 CCTTCCAAAAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTTAAAAATCATGAAAAATAGAAA
* * *
16057126 ACGAGTCGCCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATC-AATTTACAAGC
386 ACGACTCACCTTGCCATGAAACCTCACGTGAAGGCTTAAGGGACCATTGTA-CGAATTTACAAGC
* *
16057190 CACAAAAATTGG-ACTGGC-ACGTAGAA-ACATGAAGATGTGCCTAAACCCACCTACCACCCTAT
450 CACAAAAA-TGGCA-TGGCAACGCA-AATACATGAAGATGTGCCTAAACCCACCAACCACCCTAT
* * *
16057252 CGATCCACAGCTTGTGCATCCCGTCTCTCTGGCCGACGTTGTGCTCGTCCT-CCCACCCACCCGC
512 CGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG-CCTACCCACCCACCCGC
* * * *
16057316 TCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGG
576 TCATTTCGTCAGTTAGCTTAGGCATACGGAGTTCAATCCCAGTCTAAGATTGGAACGGACCGAGG
* * *
16057381 GTTGCGACAGCAAGATC-GACAGCATGCAAAAGGG-GACCCGACCGATCCCTGGCTTACGCATCC
641 GTTACGACAGCAAGATCAG-CAGCACGC-AAAGGGTGACCCGACCGATCCCCGGCTTACGCATCC
** * * *
16057444 CGCCCCTCTGGCCGGTTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTTGGCATACGGAGTTC
704 CGCCCCTCTGGCCGGTTGAGCGCCCACACGCTAATTTCATGGGTTAACTTAGGCATACGGAGTTC
16057509 ATTCCCAATCTAAGCATACGAAGTTCATTCCCAGTCTAAGA-TCGGACCGGACCGAGGGTTGC
769 ATTCCCAATCTAAGCATACGAAGTTCATTCCCAGTCTAAGAGT-GGACCGGACCGAGGGTTGC
16057571 AGCAGCACAT
Statistics
Matches: 735, Mismatches: 80, Indels: 28
0.87 0.09 0.03
Matches are distributed among these distances:
829 4 0.01
830 659 0.90
831 31 0.04
832 38 0.05
833 3 0.00
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (832 bp):
CGGAGAACCTGACAGGCGGCATTAGGGTTCCGACGATCGGAAGGGCCGGGGGAGGTGTACGCACA
TAATGTGCGATTGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAG
AACTCACACCCCCTCAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGC
CTAAAATGAGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
TTTTTTGGGCATGCCAAAAAAAATACAAGGATGACGTCTACCAAGTTTGGGACCAAAACTCCTTC
CAAAAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAC
TCACCTTGCCATGAAACCTCACGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCACAAA
AATGGCATGGCAACGCAAATACATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACA
GCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTACCCACCCACCCGCTCATTTCGTC
AGTTAGCTTAGGCATACGGAGTTCAATCCCAGTCTAAGATTGGAACGGACCGAGGGTTACGACAG
CAAGATCAGCAGCACGCAAAGGGTGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGC
CGGTTGAGCGCCCACACGCTAATTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCCAATCTA
AGCATACGAAGTTCATTCCCAGTCTAAGAGTGGACCGGACCGAGGGTTGCGG
Found at i:16061414 original size:26 final size:26
Alignment explanation
Indices: 16061378--16061430 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16061368 GTTGACTTAG
*
16061378 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16061404 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16061430 G
1 G
16061431 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16062991 original size:26 final size:26
Alignment explanation
Indices: 16062962--16063015 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
16062952 TGGGTTGACT
16062962 TAGGCATACAGAGTTCATTCCCAGTC
1 TAGGCATACAGAGTTCATTCCCAGTC
*
16062988 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACAGAGTTCATTCCCAGTC
16063014 TA
1 TA
16063016 AGATCAGATC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
TAGGCATACAGAGTTCATTCCCAGTC
Found at i:16063634 original size:894 final size:892
Alignment explanation
Indices: 16061876--16070033 Score: 10784
Period size: 897 Copynumber: 9.1 Consensus size: 892
16061866 AATCTTGAAC
*
16061876 CGTAGTGCCCGCCCGCCCGCTCGCTCATTTCGTCGGTTCGCTTAGGCATACGGAGTTCATTCCCA
1 CGTAGTGCCCGCCCGCCCGCTCG----TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * * ** * * * * * *
16061941 ATCTAAGATTGGACCGGACTGAGGGTTGTGGTAGCAGAATCGGTAGCATGCAGAAGGGGACTC-A
62 GTCTAAGATTGGACCAGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA
* * * * * * * * *
16062005 GCTGATCCCCAGCTTGCACATCCCACCCTTCTGGCCGACTGAGCGCCCGCACACTCGTTTCGTGG
127 -CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGTACGCTCGTTTCGTGG
* * *
16062070 GTTGACTTAGGCATCCGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCGCAGTCTAAGAT
191 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
** * * * *
16062135 CAAACCAGACCAAGGGTTGCGGCAACACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTC
256 CGGA-CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
* * * * * * *
16062200 TTCGTCGGGGCA-C--CATC---G---C--CGAAGAACCTGACC-AGCAGCATTGGCGATCTGGC
320 TTCGCCGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGACCGA-CGGCATTGGGGTTCCGAC
*
16062253 GATTGGGTGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
384 GATCGGG-GGGCCG-GGGGG-GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* *
16062318 TTGGCCCCCTGTCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGACATTTTA
446 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
*
16062383 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAA
511 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * *
16062448 ATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
576 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCAAAAAAAAATACAAGGATCAC
*
16062513 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAG
641 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG
* * *
16062578 TTTTGAAAATAGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACTTGAAGGCTTAAG
706 TTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * * * * *
16062643 GGGCCATTGTATGAATTTACAAGTCATAAAACTGGCATTGGCAAGCAGAATTATGAAGATGTACC
771 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC
* *
16062708 TAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCTTCTCTCTGGCCGG
836 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* * * * *
16062765 CGTAGTGCCCACCCGTCCGGTCGTTTCATCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCT
1 CGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
** * * * * * * *
16062830 AAGATCAGACCAGACCGAGGGTTACAGTAGTAGGATCGGTAGCACGCAGAGGGGGGCCCGGCCAA
66 AAGATTGGACCAGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGA
* * * * * * *
16062895 TCTCCGGCTTGCGCATCCCTCTCCTCTGGCTGACTAAGCGCCCGTATGCTCGTTCCGTGGGTTGA
131 TCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGA
* * *
16062960 CTTAGGCATACAGAGTTCATTCCCAGTCTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAT
196 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-
* * * ** * * * *
16063025 CGGACCAAAGGTTGTGATAGAACATGCTGGGCTCAGGCATGTGCTCGTGCCGCATTTTTCTTCAC
260 CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGC
* * *
16063090 CGGGGTACCATCATCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGT
325 CGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCG-
*
16063155 GGGGGCCGGGGGGGTGCGCACATGGTGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
389 GGGGGCCGGGGGGGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
*
16063220 CTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
454 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
*
16063285 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAACCTTGTA
519 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * * **
16063350 CACTTCGAGTTTTTAGTTGAATGTTTTTGTGCACGCAAAAAAAAATACAAGGATCGTGTCTACCA
584 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCAAAAAAAAATACAAGGATCACGTCTACCA
* **
16063415 AGTTTGGGGCCAAAACTCCTTCCGAAAAAAATTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAA
649 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAA
*
16063480 ATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
714 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* * * * *
16063545 GTATGACTTTACAAGCCATAAAAATGGTATCGGCATGCAAAAATATGAAGATGTACCTAAACCCA
779 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
* * *
16063610 CCTACCATCCTATCGATCCACGACTTGCGCATCCCGTCTCTTTGGCCGG
844 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* * * *
16063659 CGTAGTGACCACCCACTCGCCGGTCCGCTCGTTTCATCGGTTGGATTAGGCATATGGAGTTCATT
1 CGTAGTG-CC-CGC-C-CG-C---CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * * ** ** ** *
16063724 CGCAATCTAAGATCGGACCAGATTGAGGGTTGTGGCAGCAGGATCGATAGCACGGAGAGGGGGAC
58 CCCAGTCTAAGATTGGACCAGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGAC
**
16063789 CCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG-TCGGCTGAGCGCCCGTACGCTCGTTTC
123 CCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCT-GGCTGAGCGCCCGTACGCTCGTTTC
* *
16063853 GTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTA
187 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * * * *
16063918 AGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGAGCATGTGCTGGTGCTGCATA
252 AGATCGGA-CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
* * ** * * *
16063983 TTTCTTCGTCGGGGCACCATC-GCTGGAGCATCACCGAAGAACCTGACCGACAGCATTGTGGTTC
316 TTTCTTCGCCGGGGCACCATCATC-GGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTC
* * * *
16064047 CAACGATCGGGGGGGCCAGGGGGTGTGCACACATGATGTGCGATGGGTGCTTGTACTTGGCCCTT
380 CGACGATC-GGGGGGCC-GGGGGGGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC--
**
16064112 ATATTGGCCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCGTCAACTCACACCCCCTTAAAG
441 ----T-------TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
*
16064177 AG-AGTTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
495 AGCA-TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * * * *
16064241 TTTCAAATGGTCACAACATCTTGTACACTTTGAGTTTTTAGCTGAATATTTTTGTGCATGCCAAC
559 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCAAAA
* *
16064306 AAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACGCCTTCCGAAAAAATTTTAAAAAA
624 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* * * *
16064371 TCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATTGAAAATGAGTCGTCTTGCCATGAAACT
689 TCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * * * *
16064436 TCTCGTGAAGGCTTAAGGGACCATTGTATGAATTTATAAGCCATAAAAATAGCATTGGCATGTAA
754 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
*
16064501 AAATGTGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
819 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* *
16064566 TCTGGCTGA
884 TCTGGCCGG
* **
16064575 CGCAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCTTAGTCT
1 CGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * * *
16064640 AAGATTAGACCAGACCAAGGGTTGCGGCAGCTGGATCGGCAGCACGTAGAGGGGGACGCGACCGA
66 AAGATTGGACCAGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGA
* * * * *
16064705 TGCCCAGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAGTGCCCGTACGCTCGTTTCGTGGGTTGA
131 TCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGA
* *
16064770 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGAC
196 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* * * *
16064835 TGGATCGAGGGTTGCGGGAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCACATTTTTCTTCGC
261 -GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGC
* * * * * *
16064900 CAGGGTA-C--CAT-----CA-C--CGGAGAACCTTACCGGCGGCATTGGGGTTCTGGCGATCGG
325 CGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-G
* **
16064954 GGGGGCCGGGGGGTTTGCGCACATGATGTGCGATGGGTGCTCATACTTGGCCCTTATATTGGCCC
389 GGGGGCCGGGGGG-GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* * * * *
16065019 CCTATCCCTCATCAAACCTCAAGAAGTCACACCCCTTTAAAGAGCATTTCAAATTTTACAGGTTT
453 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* *
16065084 GCTGGCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCGAATGGTCACAAAATCTTGT
518 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * * * * *
16065149 ACACTTCGAGTGTTTAGCTGAATTTTTTTGCGCATTCCAAAAAAAAATACATGGATCATGGCTAC
583 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA-TGCAAAAAAAAATACAAGGATCACGTCTAC
*
16065214 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTTGA
647 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGA
* *
16065279 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGGTTAAGGGACCA
712 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
**
16065344 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACC
777 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
* ** *
16065409 CACCTACCACCCTATCGATCAACGGCTTAAGCATCCCGTTTCTCTGGCCGG
842 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* * *
16065460 CATAGTGCCCGCACGCCCGCGCGTCCACTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATT
1 CGTAGTG--C-C-CG-CC-CGC--CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* ** * * * * * ** * *
16065525 CCCAGTCTAGGATCAGATCGGACCAAGGTTTACGGCAGCAAGATTAGCAGCATGTAGAGGGGGAC
58 CCCAGTCTAAGATTGGACCAGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGAC
* * * * * *
16065590 CCGACTGATCCCCGGCTTGCACATCCCGCCCCTCTGGCTGGTTGAGCACCCGCATGCTCGTTTCG
123 CCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGTACGCTCGTTTCG
* * * *
16065655 TGGGTTGACTTAGGTATACGGAGTTCATTTCTAGTCTAAGCATACGAAGTTCATTCCCAGTCTAA
188 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
** * *
16065720 GATCAAATCGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTT
253 GATCGGA-CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
* *
16065785 TTCTTCGTCGGGG------CA-C----CATCGTCGGAGAACCTGACCGACGGTATTGGGGTTCCG
317 TTCTTCGCCGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCG
* *
16065839 ACGATCGGAGGGGCCGGGGGGTGTGCACACATGGTGTGCGATGGGTGCTGGTACTTGGCCCTTAT
382 ACGATCGG-GGGGCCGGGGGG-GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
16065904 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
445 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* * *
16065969 ATAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAA
510 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
*
16066034 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCAAAAAAAAAAAATGCAAGGA
575 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC---AAAAAAAAATACAAGGA
* *
16066099 TCACCTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAA
637 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAA
** * * *
16066164 AAAGTTTCAAAAATCATGGAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCT
702 AAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
* * * *
16066229 TAAGGGACCATTGTATGAATTTACTAGCCATAAAAATGGCATTGGCATGCAAAAATGTGACGATG
767 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
* * * * *
16066294 TGCCTAAACCCACCTACCACCCTATCGATCTACGACTTGCGCATCCCATCTCTCTGGTCGA
832 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
16066355 CGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
1 CGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * * * * *
16066420 AAGATTAGACCAGACCAAGGGTTGCGACCGCTGGATCGGCAGCACGTAGAGGGGGACGCGACCGA
66 AAGATTGGACCAGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGA
* * * * *
16066485 ACCCCGGCTTGCGCATCCCGCCCCTTTGGCCGGCTGAACGCCCGTACGCTCGTTTCATGGGTTGA
131 TCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGA
*
16066550 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGAC
196 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* * * * * * *
16066615 TGGACCGAGGTTTACGGCAGCACATACTGGGCTCCGGCATGTGCTGGTGTCGCTTTTTTCTTCAC
261 -GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGC
* * * * * *
16066680 CGAGGCACCATCGTCGGAGCGTCTTCGGAGAGCCTGACCGACGGCATTGGGGTTCCGATGATCGG
325 CGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGG
* * *
16066745 GGGGACCGGGGGGGTTTGCGTACATGATGTACTATGGGTGCTGGTACTTGGCCCTTATATTGGCC
390 GGGG-CCGGGGGGG--TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* *
16066810 CCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGAATTTGAGATTTTACAGGTT
452 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
16066875 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
517 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * * *
16066940 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAGAAAAAATACATGGATCATGTCTAC
582 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCAAAAAAAAATACAAGGATCACGTCTAC
* * * * * *
16067005 CAAGCTAGGGGCCAAAACTCTTTCTGAAAAAATTTAAAAAAATCCCAAACCGTAAAAA-TTTTGA
647 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGA
*
16067069 AAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
712 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
*
16067134 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAATC
777 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
* * *
16067199 CACCTACCACCCTATCCATCCACGGCTTGCGCATCCTGTTTCTCTGGCCGG
842 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* *
16067250 -GATAGTGCCCGCCCGCCCGCGCCTCCACTCGTTCCGTTGGTTGGCTTAGGCATACGGAGTTCAT
1 CG-TAGTGCCCGCCCG-CC-CG------CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * ** * * * * *
16067314 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGACAGCAAGATCGACAACACGCAGAGGAGGA
57 TCCCAGTCTAAGATTGGACCAGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGA
* * * * * *
16067379 CCCGATCGATCTCCGGCTTGCGCATCCCGCCTCTCTTGCCT-GCTGAGTGCCCGCACGCTCGTTT
122 CCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTC-TGGCTGGCTGAGCGCCCGTACGCTCGTTT
16067443 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
186 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * * **
16067508 AAGATCGGACTGCACCGAGGGTTACGGCAGCACATACTGGGCTTC-GGCATGTGCTGGTGCCGTT
251 AAGATCGGAC-GGACCGAGGGTTGCGGCAGCACATGCTGGGC-TCGGGCATGTGCTGGTGCCGCA
** * * * *
16067572 TTTTTCTTCGCCAAGGCACCATCGTCGGAGCGTCCTCGGAGAGCCTGACCGACGGCATTGGGGTT
314 TTTTTCTTCGCCGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTT
* * * *
16067637 CCGATGATCGGGGGGACCGGGGGGGTTTGCGTACATGCATGTACTATGGGTGCTGGTACTTGGCC
379 CCGACGATCGGGGGG-CCGGGGGGG--TGCGCACATG-ATGTGCGATGGGTGCTGGTACTTGGCC
* * * * *
16067702 CTTATTTTGGCCCCCTATCTCTCATCAAACTTCGAGACCTCACACCCCCCTTAAAGAACATTTGA
440 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCCTTAAAGAGCATTTGA
* * *
16067767 GATTTTACAGGTTTGCTGTCAATAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGG
504 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* * * *
16067832 TCCCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAAAAAAAGACAA
569 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCAAAAAAAAATACAA
** * *
16067897 GGATCACACCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTCGAACCG
634 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCG
* * *
16067962 CAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGT-GTCTTGCCATAAAACTTCACGTGAAG
699 TAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* * *
16068026 GATTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAG
764 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
*
16068091 ATGTGCCTAAACCCACCTACAACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
829 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
** * *
16068155 CGTAGTGCCCGCCCGCTAGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCC
1 CGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * * * * *
16068220 AAGATTGGACCGGGCTGAGGGTTGCGGTAGCAAGATCGGCAGCACGTAGAGGGGGACCCGACCGG
66 AAGATTGGACCAGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGA
* * * * *
16068285 TCCCCAGTTTGCGCATCCCACCCCTCTGGCTGGCTGAGCGCCCGCACAG-TCGTTTCGTGTGTTG
131 TCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGTAC-GCTCGTTTCGTGGGTTG
* *
16068349 ACTTAGGCGTACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGG
195 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GG
* * * * * * **
16068414 CCGAACCGAGGGTTGCGGCAGCACATGTTGGGCTCGAGCATGTGCTGGTGACGTATTTTTCTTAA
259 ACGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG
* * * * **
16068479 CTGGGACAGCATCGTCGGAGCATCACCGGAGAACCTGACC-AGCGGCATTGGGGTTCCGACGATC
324 CCGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGACCGA-CGGCATTGGGGTTCCGACGATC
16068543 GGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
388 -GGGGGGCCGGGGGG-GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* *
16068608 CCCCTATCCCTCATCAAACCTCCAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGTT
451 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* * *
16068673 TTGCTGCCAGTAGCAATTAAAGTCTCTGAAATGGGGACAATTTTTTCAAATGGTCACAAAATCTT
516 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
** ** *
16068738 GTACACTTCGAGTTCCTAGCTGAATTTTTTCATGCATGCCAAAAAAAAAATACAAGGATCACATC
581 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG-C-AAAAAAAAATACAAGGATCACGTC
* ** *
16068803 TACCACGTTTGGGGCCAAAACTCCTTCTAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTT
644 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
** * *
16068868 CAAAAATCGTGAAAAATATAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
709 TGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
*
16068933 CCATTGTATGAATTTACAAGCCACAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
774 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
* * * *
16068998 ACCCACCTACCACCCTATCGATCCACGGCTTGCGGATCTCGTCTCACTGGCCGA
839 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* * * * * *
16069052 CGTAGTGCCCGCCCGCCAGCCCATTT-GATCAGTTGGATTAGGCATACAGAGTTCATTCCCTA-T
1 CGTAGTGCCCGCCCGCCCGCTCGTTTCG-TCGGTTGGCTTAGGCATACGGAGTTCATTCCC-AGT
* * * * * *
16069115 CTAAGATTGGACTAGGCTGAGGGTTATGGTAGCAGGATCAGCAGCACGCAGAGGGGGACCCGACC
64 CTAAGATTGGACCAGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACC
* * *
16069180 GATCCCCAGCTTTCGCATCCCGCCCCTCTGGCTGGCTGAGCACCCGTACGCTCGTTTCGTGGGTT
129 GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTT
* * * *
16069245 GACTAAGGCGTACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGG
194 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* * *
16069310 ACTAGACTGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
259 AC-GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
* * * * * * *
16069375 GTCGGGGCACCATCGTTGGAGCATCGTCAGAGAACCTGACCGACGGCATTAGGGTTTCGGCGATC
323 GCCGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC
* * *
16069440 GGGGGGCCGGGGTGTGTGCGCACATGATGTGCAATGGGTGCTGGTTCTTGGCCCTTATATTGGCC
388 GGGGGGCCGGGG-GGGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
*
16069505 CCCTATCCCTCATCAAACCTTC-AGAACTCACCCCCCCTTAAAGAGCATTTGAGATTTTACAGGT
452 CCCTATCCCTCATCAAACC-TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* * * *
16069569 TTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGATACTTTTTTCAAAAGGTCATAAAATCTT
516 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* *
16069634 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGTATGCCAAAAAAAAA-ACAAGGATCCCGTCT
581 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG-CAAAAAAAAATACAAGGATCACGTCT
* * * *
16069698 ACCAAGTTTGGGGCCGAAAA-TCCTTCCGAAATAGTTTTAAAAAATCCCAAACCGCAAAAAGTTT
645 ACCAAGTTTGGGGCC-AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
*
16069762 TGAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
709 TGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
** *
16069827 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGAAAAGCAGAAATATGAAGATGTGCCTAA
774 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
* * *
16069892 ACCCACCTACCACCCTATCGATCCACGGGTTGTGCAT-CCGTCTCTCTGGCCGA
839 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
*
16069945 CGTAGTGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
1 CGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* *
16070010 AAGATTGGACCGGATCGAGGGTTA
66 AAGATTGGACCAGACCGAGGGTTA
16070034 TGACAACACA
Statistics
Matches: 6415, Mismatches: 741, Indels: 222
0.87 0.10 0.03
Matches are distributed among these distances:
884 158 0.02
885 511 0.08
886 2 0.00
887 268 0.04
888 5 0.00
889 25 0.00
890 8 0.00
891 8 0.00
892 6 0.00
893 604 0.09
894 809 0.13
895 519 0.08
896 457 0.07
897 877 0.14
898 64 0.01
899 208 0.03
900 2 0.00
901 2 0.00
902 320 0.05
903 399 0.06
904 72 0.01
905 358 0.06
906 31 0.00
907 2 0.00
908 273 0.04
909 1 0.00
911 1 0.00
912 2 0.00
913 1 0.00
914 2 0.00
915 3 0.00
916 417 0.07
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (892 bp):
CGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
AAGATTGGACCAGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGA
TCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGA
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCC
GGGGCACCATCATCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGG
GGGCCGGGGGGGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCAAAAAAAAATACAAGGATCACGTCTACCAAG
TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAAT
CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
Found at i:16063896 original size:26 final size:26
Alignment explanation
Indices: 16063867--16063919 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16063857 GTTAACTTAG
16063867 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16063893 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16063919 G
1 G
16063920 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16064129 original size:13 final size:13
Alignment explanation
Indices: 16064111--16064139 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
16064101 ACTTGGCCCT
16064111 TATATTGGCCCCC
1 TATATTGGCCCCC
16064124 TATATTGGCCCCC
1 TATATTGGCCCCC
16064137 TAT
1 TAT
16064140 CCCTCATCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.17, C:0.34, G:0.14, T:0.34
Consensus pattern (13 bp):
TATATTGGCCCCC
Found at i:16064804 original size:26 final size:26
Alignment explanation
Indices: 16064775--16064827 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16064765 GTTGACTTAG
16064775 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16064801 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16064827 G
1 G
16064828 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16065706 original size:26 final size:26
Alignment explanation
Indices: 16065670--16065720 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
16065660 TGACTTAGGT
* * *
16065670 ATACGGAGTTCATTTCTAGTCTAAGC
1 ATACGAAGTTCATTCCCAGTCTAAGC
16065696 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
16065721 ATCAAATCGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGC
Found at i:16066585 original size:26 final size:26
Alignment explanation
Indices: 16066555--16066607 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16066545 GTTGACTTAG
16066555 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16066581 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16066607 G
1 G
16066608 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16067494 original size:26 final size:26
Alignment explanation
Indices: 16067458--16067510 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16067448 GTTGACTTAG
16067458 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16067484 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16067510 G
1 G
16067511 ATCGGACTGC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16069289 original size:26 final size:26
Alignment explanation
Indices: 16069255--16069304 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
16069245 GACTAAGGCG
16069255 TACGAAGTTCATTCCCAGTCTAAGCA
1 TACGAAGTTCATTCCCAGTCTAAGCA
*
16069281 TACGGAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
16069305 ATTGGACTAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCA
Found at i:16070969 original size:159 final size:158
Alignment explanation
Indices: 16070674--16071041 Score: 461
Period size: 159 Copynumber: 2.3 Consensus size: 158
16070664 CCACCTGCCT
* * * ** **
16070674 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAATTCATTCCCAGTCTAAGGTTGGATTGGACCGA
1 GCTCGTTTCGTGGGTT-GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGA
* * *
16070739 AGGTTGCGGCAGGATGATCGACAGCACGTAGAGGGGGACCCGGGCGACCCCTAGCTTGCGCATCC
65 AGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGGCGACCCCTAGCTTGCGCATCC
* * *
16070804 CACCCCTCTGGCCGGCTGAGCGGCTGCAT
130 CACCCCTCTGGCCGGCTGAGCGCCCGCAC
* * *
16070833 GTTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGA
1 GCTCGTTTCGTGGGTTG-CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGA
* * * *
16070898 GGGTTGCGGCAGCAGGATCTG-TAGCACGCAGAGGGGGACCCGGTCGATCCCC-GGCTTGCGCAT
65 AGGTTGCGGCAGCAGGATC-GACAGCACGCAGAGGGGGACCCGGGCGA-CCCCTAGCTTGCGCAT
* * * *
16070961 CCCGCCCCTCTGGTCGGTTGAGCGCCCGTAC
128 CCCACCCCTCTGGCCGGCTGAGCGCCCGCAC
16070992 GCTCGTTTCGTGGGTTTGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
1 GCTCGTTTCGTGGG-TTGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
16071042 CATATGGAGT
Statistics
Matches: 178, Mismatches: 27, Indels: 8
0.84 0.13 0.04
Matches are distributed among these distances:
158 1 0.01
159 169 0.95
160 8 0.04
ACGTcount: A:0.17, C:0.28, G:0.32, T:0.23
Consensus pattern (158 bp):
GCTCGTTTCGTGGGTTGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAA
GGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGGCGACCCCTAGCTTGCGCATCCC
ACCCCTCTGGCCGGCTGAGCGCCCGCAC
Found at i:16071044 original size:26 final size:26
Alignment explanation
Indices: 16071015--16071067 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16071005 GTTTGCTTAG
16071015 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16071041 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16071067 G
1 G
16071068 ATCAGACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16072429 original size:26 final size:26
Alignment explanation
Indices: 16072399--16072451 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16072389 GTTGACTTAG
*
16072399 GCATACAGAGTTCGTTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
16072425 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16072451 G
1 G
16072452 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16073328 original size:26 final size:26
Alignment explanation
Indices: 16073290--16073342 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16073280 GTTCACTTAT
16073290 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16073316 GCATAC-GACGTTCATTCCCAGTCTAA
1 GCATACGGA-GTTCATTCCCAGTCTAA
16073342 G
1 G
16073343 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 2 0.08
26 24 0.92
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16073792 original size:887 final size:881
Alignment explanation
Indices: 16071564--16074808 Score: 4028
Period size: 887 Copynumber: 3.7 Consensus size: 881
16071554 GACCAGACCG
* * * *
16071564 AGGGTTACAGCAGCACATGTTGGGCTTGGGCATGTGCTGGTGCCACATTTCTTTTCGTCGGGGCA
1 AGGGTTACAGCAGCACATGCT-GGCTCGGGCATGTGCTGGTGCCGCATTTC-CTTCGTCGGGGCA
** * * * *
16071629 CCATCGTCGAAGCA-TCACCGGAGAAACTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGC
64 CCATCG--G-AGCACTTGCCAGAGAACCTGACCGACGGCATTGGGGTTTCGACGATC----GGG-
*
16071693 CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATATTGGCACCCTATC
121 -GGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATATTGGC-CCCTATC
* *
16071758 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCAGCT
184 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
16071823 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
249 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * * * *
16071888 TGAGTTTTTAGCTGAATTTTTTTGTGCCTGCCAACAAAAATAAAAAGATCACGA-CCACCAAGTT
314 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC-ATCTACCAAGTT
*** * * * * *
16071952 TGGGGTTGAAACTCCTTTCGAAAAAATTTTAAGAAATCTCGAACAGCAAAAATTTAAAAAAATCG
378 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAAC-GCAAAAAGTTACAAAAATCG
16072017 TGAAAAATAGAAAA-GAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
442 TGAAAAATAGAAAACG-AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
**
16072081 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATAT-AAAGATGTGCCTAAACCCACC
506 TGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAA-ATGTGCCTAAACCCACC
* *
16072145 TACCACCCTATCGATCCACGGCTTACGTATCCCGTCTCTCTGGCCGACGTAGTGCCCGCTTGCTC
570 TACCACCCTATCGATCCACGGCTTACGTATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCTCGC-C
* * * * *
16072210 GTCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATATGGAGTTTATTCCCAGTCTAAGATCTGAC
634 GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* ** * *
16072275 AGACTGAGGGTTGCGGTAGCAGGATC-AGC-AGCACGCAGAGGGGGACCCGATCGATCCCTGGCT
699 GGACTGAGGGTTG-GACAGCAGGATCGA-CTAGCA--AAGA-GGGGACCCGATCGATCCCCGGCT
* * * * *
16072338 TGCGCTTCTCGCCCCTCTGGCCGATTGAGCGCCCTCA--TTCTCGTTTCGTGGGTTGACTTAGGC
759 TTCGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGTT-T-GTTTCGTGGGTTGACTTAGGC
* *
16072401 ATACAGAGTTCGTTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCA
822 ATACGGAGTTCATTCCCAGTCTAAGCATAC-GAGTTCATTCCCAGTCTAAGATC-GACTGG---A
** * *
16072466 AGGGTTGTAGCAGCACATTCTGGGCTCGGGCATGTGCTGGTGCCGCATTT--TTC-T----TCA-
1 AGGGTTACAGCAGCACATGCT-GGCTCGGGCATGTGCTGGTGCCGCATTTCCTTCGTCGGGGCAC
* * * * * *
16072523 C-T-GGAGCACCGTTGCCGGAGAACCTAACTGACGGTATTAGGGTTTCGGCGATCGGGGGGGCCG
65 CATCGGAGCA-C-TTGCCAGAGAACCTGACCGACGGCATTGGGGTTTCGACGATC---GGGG--G
* *
16072586 GGGGATGTGTGCACATGATGTGTGATGGGTGCTGGAACTTGGCCCTTATATTGGTCCCCTATCCC
123 GGGG-TGTGTGCACATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATATTGG-CCCCTATCCC
* * *
16072651 TCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGC-TTTGAGATTTAACAAGTTTGCTGCCAG
186 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
*
16072715 TAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
251 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * * *
16072780 AGTTTTTAGCTGAATTTTTTTGTACATGCTAACAAAAATACAAGGATCACATCTACAAAGTTTGT
316 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGG
* * * ***
16072845 GACCAAAACTCCTTCCGAAAATATTTTAAAAAATCCCAAACTGCAAAAAGTTTTGAAAATCGTGA
381 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAAC-GCAAAAAGTTACAAAAATCGTGA
16072910 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
445 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* *
16072975 TTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAAATGTTCCTAAACCCACCTACCA
510 TTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAAATGTGCCTAAACCCACCTACCA
* * *
16073040 CCCTATCGATCCACGGCTTTCGCATCCCGTCTCTCTGGCCCGGCGTAGTGCCCGCCCGCCGACCC
575 CCCTATCGATCCACGGCTTACGTATCCCGTCTCTCTGG-CCGGCGTAGTGCCCGCTCGCCG-CCC
16073105 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
638 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGGA
**
16073170 CCAAGGGTTGTGACAGCAGGATCGA-TAGCATATAGAGGGGACCCGATCGATCCCCGGCTTTCGC
702 CTGAGGGTTG-GACAGCAGGATCGACTAGCA-A-AGAGGGGACCCGATCGATCCCCGGCTTTCGC
* * * * * *
16073234 ATCGCGCCCCTCTGGCCGGCTGAGTGCCCGCACGTTTGTTTCGTAGGTTCACTTATGCATACGGA
764 ATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGTTTGTTTCGTGGGTTGACTTAGGCATACGGA
16073299 GTTCATTCCCAGTCTAAGCATACGACGTTCATTCCCAGTCTAAGATCAGACTGGA
829 GTTCATTCCCAGTCTAAGCATACGA-GTTCATTCCCAGTCTAAGATC-GACTGGA
* * * *
16073354 AGGGTTACAGCAGCACAAGCTGGTTTGGGGCATGTGCTGGTGTCGCA-TTCCATTC-TCGGGGCA
1 AGGGTTACAGCAGCACATGCTGG-CTCGGGCATGTGCTGGTGCCGCATTTCC-TTCGTCGGGGCA
16073417 CCATCGGAGCA-TTGCCAGAGAACCTGACCGACGGCATTGGGGTTTCGACGATC-GGGGGGGGTG
64 CCATCGGAGCACTTGCCAGAGAACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGGGGTG
* * * *
16073480 TGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCATCGTCAC
129 TGTGCACATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCC-TATCCCTCATCAA
16073545 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
193 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
*
16073610 TAAAGTGTCTGAAATGGAGACACTTTTTTCAAATGGTC-CAAAATCTTGTACACTTCGAGTGTTT
258 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT-TTT
* ** *
16073674 T-GCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTTGGGCCAA
322 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAA
* * * *
16073738 AACTCCTTCCGAAAAACTTTTAAAAAATCCTGAAC-CATAAAAGGTTACGAAAATCCTGAAAAAT
387 AACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACGCA-AAAA-GTTACAAAAATCGTGAAAAAT
* *
16073802 AGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTAC
450 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * *
16073867 AAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTG
515 AAGCCATAAAAATGGCATTGGCACACAGAAATATGAAAATGTGCCTAAACCCACCTACCACCCTA
* * *
16073932 TCGATCCATGGCTTGCGTATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCTCGCCTGCCTGCCCGC
580 TCGATCCACGGCTTACGTATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCTCGCC-GCCCGCCCGC
**
16073997 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACTGAGG
644 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGGACTGAGG
* * * * *
16074062 GTTGCAGCAGCAGGATCGGTAACTCGCAAAG-GGGGACCCGACCGCTCCTCGGCTTGT-GCATCC
708 GTTGGA-CAGCAGGATC-G--ACTAGCAAAGAGGGGACCCGATCGATCCCCGGCTT-TCGCATCC
* * * *
16074125 CGCCCCTTTAGCCGGTTGAGCGCCCGCACGTTCGTTTCGTGGGTTGACATAGGCATACGGAGTTC
768 CGCCCCTCTGGCCGGTTGAGCGCCCGCACGTTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
16074190 ATTCCCAGTCTAAG-AT-CG-G---A-T---AG-----GA-C--C--G-
833 ATTCCCAGTCTAAGCATACGAGTTCATTCCCAGTCTAAGATCGACTGGA
* * * * * *
16074218 AGGGTTGCAGCAGCACATGCTGAGCTCGGGCTTGTGTTGGTGCTGCATTTTTCTTCGTAGGGGCA
1 AGGGTTACAGCAGCACATGCTG-GCTCGGGCATGTGCTGGTGCCGCA-TTTCCTTCGTCGGGGCA
* * *
16074283 CCATCGTCGGAGCAACGTTG--A-AGAACCTGATCGGCGGCATTGGGGTTTCGGCGATCGGGAGG
64 CCA---TCGGAGC-AC-TTGCCAGAGAACCTGACCGACGGCATTGGGGTTTCGACGATC-GG-GG
* * * **
16074345 GCCGGGCGGGTGTACGCATATGATGTGCGATGGGTTCTACCACTTGGCCCTTATATTGGCCCCTA
122 G--GGG-GTGTGT--GCACATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCTA
16074410 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
182 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
16074475 CCAGTAGCCATTAAAGTGTCTGAAATGCGGACACTTTTTTCAAATGGTTACAAAATCTTGTACAC
247 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * *
16074540 TTCAAGTTTTTAGCTGACTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCT-CCATGT
312 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGT
* * *
16074604 TTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAATGTTTCAAAAATC
377 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAA-CGCAAAAAGTTACAAAAATC
* *
16074669 GTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGGCCATTGTA
441 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * * * * *
16074734 TGAATTTAGACGCCAAAAAAAAAGGCATTGGCACACATAAATATGAAGATGTGCCTAAA-CCA-C
506 TGAATTTACAAGCC-ATAAAAATGGCATTGGCACACAGAAATATGAAAATGTGCCTAAACCCACC
*
16074797 TTCCACCCTATC
570 TACCACCCTATC
16074809 ACCTATCGCG
Statistics
Matches: 2070, Mismatches: 208, Indels: 157
0.85 0.09 0.06
Matches are distributed among these distances:
864 37 0.02
865 5 0.00
866 13 0.01
867 1 0.00
869 39 0.02
870 3 0.00
871 3 0.00
872 6 0.00
874 3 0.00
875 16 0.01
876 246 0.12
877 151 0.07
878 2 0.00
879 1 0.00
880 1 0.00
883 1 0.00
885 5 0.00
886 112 0.05
887 466 0.23
888 123 0.06
889 4 0.00
890 373 0.18
891 328 0.16
892 31 0.01
893 4 0.00
894 40 0.02
895 1 0.00
896 1 0.00
897 6 0.00
898 1 0.00
899 3 0.00
902 44 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (881 bp):
AGGGTTACAGCAGCACATGCTGGCTCGGGCATGTGCTGGTGCCGCATTTCCTTCGTCGGGGCACC
ATCGGAGCACTTGCCAGAGAACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGGGGTGTG
TGCACATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACC
TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACT
CCTTCCGAAAAAATTTTAAAAAATCCCGAACGCAAAAAGTTACAAAAATCGTGAAAAATAGAAAA
CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
TAAAAATGGCATTGGCACACAGAAATATGAAAATGTGCCTAAACCCACCTACCACCCTATCGATC
CACGGCTTACGTATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCTCGCCGCCCGCCCGCTCGTTTC
GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACGGACTGAGGGTTGGACA
GCAGGATCGACTAGCAAAGAGGGGACCCGATCGATCCCCGGCTTTCGCATCCCGCCCCTCTGGCC
GGTTGAGCGCCCGCACGTTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
GCATACGAGTTCATTCCCAGTCTAAGATCGACTGGA
Found at i:16076427 original size:719 final size:716
Alignment explanation
Indices: 16074976--16076455 Score: 2279
Period size: 719 Copynumber: 2.1 Consensus size: 716
16074966 TTTAAGGGAA
*
16074976 TTCATTCCGTAGTCTAAGATCAGACCGGA-CGAGGG-TAC-GCAGCACATGCTGGCTCGGCATGT
1 TTCATTCC-TAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGCTCGGCATGT
* *
16075038 GCTGTGCAGCATTTTCTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGATCGCAGTT
65 GCTGTGCAGCATTTTCTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGATCGCAGGT
* * *
16075103 ATTGGGGGTTCCGCATGATCGGGGGAGCCGGGGGTGTGCGCACATGAAATGTACGATGGGTGCTG
130 ATTGAGGGTTCCGCACGATCGGGGGAGCCGGGGGTCTGCGCACATG-AATGTACGATGGGTGCTG
*
16075168 GTACTTGGGCCCTTATATGGCCCCCTATCCCCTCATTAAACCTCGAGAACTCACACCCCCTCAAA
194 GTACTTGGGCCCTTATATGGCCCCCTATCCCCTCATCAAACCTCGAGAACTCACACCCCCTCAAA
* *
16075233 GATCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGCCTGAAATGGGGACACTTT
259 GATCATTTGAGATTTTACAGGTTTGCTACCAGTACCCATTAAAGTGCCTGAAATGGGGACACTTT
* *
16075298 TTTGAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
324 TTTCAAATGGTCACAAAATCGTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
* *
16075363 AAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
389 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTAAAAAA
* * *
16075428 TCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
454 TCCCAAACAGCAAAAAGTTTCAAAAAGCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACT
*
16075493 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTATAAGCCATAAAAATGGAATTGGCACGTAG
519 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTATAAGCCATAAAAATGGAATTGGCACGCAG
* * *
16075558 AAATATGATGATGTGCCTAAACGCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCATCTC
584 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTC
* * * * *
16075623 TTTGGTCGACGTAGTGCCCGCCCGTTCGCCCGCTCGTCCGTTTCGTCGGTTGGCTTAGGCATTCG
649 TCTGGTCGACGTAGTGCCCGCCCGTTCGCCCGCCCGTCCATTTCGTCGATTGGCTTAGGCATACG
16075688 GAG
714 GAG
* * * *
16075691 TTCATTCCTACTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGTATG
1 TTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCT-GGCTC-GGCATG
* * * * *
16075756 TGCTGCTGCAGCATTTTTCTTTGCTGGGGCACCATTGTCGGAGCATCGCCGGAGAACCTGA-CGG
64 TGCTG-TGCAGCA-TTTTC-TCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGATCGC
* *
16075820 ACGGTATT-AGGGTTCCG-ACGATCGGGGGTGCCGGGGGGGTTCTGCGCACATG-ATGTGCGATG
126 A-GGTATTGAGGGTTCCGCACGATCGGGGGAGCC--GGGGG-TCTGCGCACATGAATGTACGATG
* *
16075882 GGTGCTGGTACTT-GGCCCTTATATTGG-CCTCTAT-CCCTCATCAAACCTCGAGAGCTCACACC
187 GGTGCTGGTACTTGGGCCCTTATA-TGGCCCCCTATCCCCTCATCAAACCTCGAGAACTCACACC
16075944 CCCTCAAAGATCATTTGAGATTTTACAGGTTTGCTACCAGTACCCATTAAAGTGCCTGAAATGGG
251 CCCTCAAAGATCATTTGAGATTTTACAGGTTTGCTACCAGTACCCATTAAAGTGCCTGAAATGGG
* *
16076009 GACACTTTTTTCAAATGGTCACAAAATCGTGTACACTTCGAGTTTTTATCTGAATTTTTTTTTTG
316 GACACTTTTTTCAAATGGTCACAAAATCGTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTG
*
16076074 CATGCCAAAAAAAATACAAGGATCACGTC-ACCAAGTTTGGGGCCAAAACACCTTTCGAAAAAAT
380 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAAAT
16076138 TTTAAAAAATCCCAAACAGCAAAAAGTTTCAAAAAGCATGAAAAATAGAAAACGAGTCATCTTGC
445 TTTAAAAAATCCCAAACAGCAAAAAGTTTCAAAAAGCATGAAAAATAGAAAACGAGTCATCTTGC
*
16076203 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTATAAGCCATAAAAATGGCATT
510 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTATAAGCCATAAAAATGGAATT
*
16076268 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
575 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * *
16076333 TCCCGTCTCTCTGGTCGACGTAGTGCCC-CGC-TTGCCTGCCCGCCCG-CTCATTTCGTTGATTG
640 TCCCATCTCTCTGGTCGACGTAGTGCCCGCCCGTT--C-GCCCGCCCGTC-CATTTCGTCGATTG
16076395 GCTTAGGCATACGGAG
701 GCTTAGGCATACGGAG
*
16076411 TTCATTCC-AGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCA
1 TTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCA
16076456 GGATCCGTAG
Statistics
Matches: 697, Mismatches: 50, Indels: 32
0.89 0.06 0.04
Matches are distributed among these distances:
714 17 0.02
715 14 0.02
716 2 0.00
717 14 0.02
718 7 0.01
719 430 0.62
720 115 0.16
721 41 0.06
722 46 0.07
723 11 0.02
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (716 bp):
TTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGCTCGGCATGTG
CTGTGCAGCATTTTCTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGATCGCAGGTA
TTGAGGGTTCCGCACGATCGGGGGAGCCGGGGGTCTGCGCACATGAATGTACGATGGGTGCTGGT
ACTTGGGCCCTTATATGGCCCCCTATCCCCTCATCAAACCTCGAGAACTCACACCCCCTCAAAGA
TCATTTGAGATTTTACAGGTTTGCTACCAGTACCCATTAAAGTGCCTGAAATGGGGACACTTTTT
TCAAATGGTCACAAAATCGTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTAAAAAATC
CCAAACAGCAAAAAGTTTCAAAAAGCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTC
ACGTGAAGGCTTAAGGGACCATTGTATGAATTTATAAGCCATAAAAATGGAATTGGCACGCAGAA
ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTC
TGGTCGACGTAGTGCCCGCCCGTTCGCCCGCCCGTCCATTTCGTCGATTGGCTTAGGCATACGGA
G
Found at i:16076595 original size:26 final size:26
Alignment explanation
Indices: 16076559--16076611 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16076549 GTTCACTTAG
16076559 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16076585 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16076611 G
1 G
16076612 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16076736 original size:185 final size:185
Alignment explanation
Indices: 16076401--16076817 Score: 581
Period size: 185 Copynumber: 2.3 Consensus size: 185
16076391 ATTGGCTTAG
* * * * *
16076401 GCATACGGAGTTCATT-CCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAGGATCCGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGACAGCAAGATCAGCA
*
16076465 GCACGAAGAGGGGGACCCAACCAATCCCCGGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCGC
66 GCACGAAGAGGGGGACCCAACCAATCCCCAGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCGC
* * *
16076530 CCGCACGCTCGTTTTGTGGGTTCACTTAGGCATACGGAGTTCATTCCCAGTCTAA
131 CCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * *
16076585 GCATATGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCAAGGGTTGCGATAGCAAGATCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGACAGCAAGATCAGCA
*** * * * *
16076650 GCACGCAA-AGGGGGACTTGACCGATCCCCAGCTTGTGCATCTTGCCTCTCTGGCCGGCTGAGCG
66 GCACG-AAGAGGGGGACCCAACCAATCCCCAGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCG
*
16076714 CCCGCACGCTTGTTTCGTGGGTTAACTTAGGCATACAGAGTTCATTCCCAGTCTAA
130 CCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * *
16076770 GCATACGGAGGTCATTCTCAGTCTAAGATCA-AGCCAGA-CGAGGGTTGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CCAGACCAAGGGTTGC
16076818 AGCAGCAGAT
Statistics
Matches: 205, Mismatches: 25, Indels: 6
0.87 0.11 0.03
Matches are distributed among these distances:
184 25 0.12
185 178 0.87
186 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGACAGCAAGATCAGCA
GCACGAAGAGGGGGACCCAACCAATCCCCAGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCGC
CCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACAGAGTTCATTCCCAGTCTAA
Found at i:16076784 original size:26 final size:26
Alignment explanation
Indices: 16076744--16076796 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16076734 GTTAACTTAG
*
16076744 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGGTCATTCCCAGTCTAA
* *
16076770 GCATACGGAGGTCATTCTCAGTCTAA
1 GCATACAGAGGTCATTCCCAGTCTAA
16076796 G
1 G
16076797 ATCAAGCCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGGTCATTCCCAGTCTAA
Found at i:16078152 original size:26 final size:26
Alignment explanation
Indices: 16078113--16078169 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
16078103 ATTCTTCTGA
* *
16078113 AAAAATTTTAAAAAATT-TTGAAACAT
1 AAAAAGTTTAAAAAATTGTGGAAA-AT
*
16078139 AAAAAGTTTCAAAAATTGTGGAAAAT
1 AAAAAGTTTAAAAAATTGTGGAAAAT
16078165 AAAAA
1 AAAAA
16078170 ACGAGTCGTC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 22 0.81
27 5 0.19
ACGTcount: A:0.60, C:0.04, G:0.09, T:0.28
Consensus pattern (26 bp):
AAAAAGTTTAAAAAATTGTGGAAAAT
Found at i:16078560 original size:26 final size:26
Alignment explanation
Indices: 16078531--16078583 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16078521 GTTGACTTAG
* *
16078531 GCATACGGGGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAGTCCCAGTCTAA
*
16078557 GCATATGGAGTTCAGTCCCAGTCTAA
1 GCATACGGAGTTCAGTCCCAGTCTAA
16078583 G
1 G
16078584 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCAGTCCCAGTCTAA
Found at i:16079171 original size:893 final size:897
Alignment explanation
Indices: 16076591--16082312 Score: 7114
Period size: 893 Copynumber: 6.4 Consensus size: 897
16076581 CTAAGCATAT
* * * * * * ** *
16076591 GGAGTTCATTCCCAGTCTAAGATCAGATCAGACCAAGGGTTGCGATAGCAAGATC-AGCAGCACG
1 GGAGTTCAATCCTAGTCTAAGATTAGATCAAACCGAGGGTTGTGGCAGCAGGATCGA-CAGCACG
* ** * * ** *
16076655 CAAAGGGGGACTTGACCGATCCCCAGCTTGTGCATCTTGCCTCTCTGGCCGG-CTGAGCGCCCGC
65 CAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGACTGAGCGCCCGC
* * * *
16076719 ACGCTTGTTTCGTGGGTTAACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGGTCA
130 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* *
16076784 TTCTCAGTCTAAGATCA-AGCCAGA-CGAGGGTTGCAGCAGCAGATGCTGGGCTCGGGCATGTGC
195 TTCCCAGTCTAAGATCAGA-CCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGC
* * ** *
16076847 TGGTGCCACATTTTTCTTCG-CTGGGGCACCATCGTCGGAGCGTCATCGGAGAACCTGACCGACG
259 TGGTGCCACATTTTTCTTCGTC-GGGGCACCATCGCCGGAGCATCGCCAGAGAACCTGACCGACG
* * * * *
16076911 GCATTGGGGTTCCGACGATCGGGGCGGCC-GGGCGGTGTGCGCACATAATGTGTGATGGGTGCTG
323 GCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTA
** * *
16076975 GTACTTGGCCCTTATATTGGCCCCCTATTTCTCATCAAACCTCAAGAACTGACACCCCCTTAAAG
388 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
*
16077040 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACCCTTTT
453 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * * * * *
16077105 TTCAAATGGTCACAAAATATTGTACACTTCGAGTTTTCAGCT-GATTTTTTTGTACATGCCAAGA
518 TTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAAAA
* * *
16077169 AAAATACAAGGATCATGTCTACAAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTTAAAAAT
583 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAT
** * * * * * * * *
16077234 CTCGAACCTTAAAAAGTTTCGAAATTTGTGAAAAACAGAAAGCGAGACGTCTGGCCATGAAACTT
648 CTAAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* *
16077299 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAATTGGCATTAGCATGCAGG
713 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA-G
* * * *
16077364 AAATATGAAGATGTGCCTAAA-CCACCTACCACCCATATCGAT-CATGGC-TACGCAT-CC-TCG
777 AAATATGAAGATGTGCCTAAACCCACCTACCACCC-TATCGATCCACGGCTTGCACATCCCGTCT
* * * * *
16077424 CTCTGGTTC-AGCGTAGTGCCCGCCCG-CCGCTCGTTTCATCTGTTGG-TTA-GCATAAAA
841 CTCTGG-CCGA-CGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC-T-TAC
* * * * * * **
16077481 GGAGTTC-ATCCCAGTCTAAAATTGGATCAGACCAAGGGTT-TGGTAGCAGGGATCGGTAGCACG
1 GGAGTTCAATCCTAGTCTAAGATTAGATCAAACCGAGGGTTGTGGCAGCA-GGATCGACAGCACG
* * * * *
16077544 CAGAGGGGGAACCCAACTGATCCCTGGCTTGCGCATCCCGGCCCTCTGGCC-GACTGAGCACCCG
65 CAGAGGGGG-ACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGACTGAGCGCCCG
* * * *
16077608 CACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAACCTATGGAGTTC
129 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* ** * *
16077673 ATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGGGGTAGCACATGCTGGGCTCGGGCATCTGC
194 ATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGC
** * * ** * *
16077738 TGGTGCCGTATTTTTCTTCATCGGGGCACCATCACCAAAGCATCGTCGGAGAACCTGACCGACGG
259 TGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCAGAGAACCTGACCGACGG
** * *
16077803 CATTGGGGTTCTAACGATCGAGGGGGTCGAGAAGGGGGTGTGCGCACATGATGTGCGATGGGTGC
324 CATTGGGGTTCCGACGATCGGGGGGGCCG-G--GGGGGTGTGCGCACATGATGTGCGATGGGTGC
*
16077868 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
386 TAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * * *
16077933 AGAGCATTTGAGATTTTACATGTTTGCTACCAATAGCCATTAAAGTGTCTAAAATGGGGACACTT
451 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * * *
16077998 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCGTGCCAA
516 TTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAA
* * * * **
16078063 CAAAAATACAAGGATCACCTCTACCAA-TTTGGGGCCAAAAATTCTTCTGAAAAAATTTTAAAAA
581 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAA
* * * ** * * *
16078127 ATTTTGAAA-CATAAAAAGTTTCAAAAATTGTGGAAAATAAAAAACGAGTCGTCTTGCCATGAAA
646 A-TCTAAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* **
16078191 CTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGCATTGGCACAC
710 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* *
16078256 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCACATCTCGTC
775 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTC
* * *
16078321 TCTCTGGCTGACGTAATGCCCGCCCGCCCGCT-ATTTCGTCGGTTGGCTTAGGCTTAC
840 TCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCTTAC
* * *
16078378 GGAGTTCAATCCTAGTCTAAGATTAGATCAAACTGAGGGTTGTGGCAACAGGATCGACAGCATGC
1 GGAGTTCAATCCTAGTCTAAGATTAGATCAAACCGAGGGTTGTGGCAGCAGGATCGACAGCACGC
* * * * * * *
16078443 GGAGGGGGACCTGGCCGATTCCCGGCTAT-CGCATTCCGCCCCTCTGGCCGGTC-GAGTGCCCGC
66 AGAGGGGGACCCGACCGATCCCCGGCT-TGCGCATCCCGCCCCTCTGGCCGGACTGAGCGCCCGC
* * *
16078506 ATGCTCGTTTCGTGGGTTGACTTAGGCATACGGGGTTCATTCCCAGTCTAAGCATATGGAGTTCA
130 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * *
16078571 GTCCCAGTCTAAGATCAGACC-GAACCGCA-GGATGCAGCAGCACATGCTGGGCTCGGGCATGTA
195 TTCCCAGTCTAAGATCAGACCAG-ACCG-AGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTG
* * *
16078634 CTGGTGCCCCA-TTTTCTTCGTCGGGGCACCATCGCCAGG-GCATCGCCAGAGAACCGGACCGGC
258 CTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCC-GGAGCATCGCCAGAGAACCTGACCGAC
** *
16078697 GGCATTGTCGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTACT
322 GGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* *
16078762 AGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTGAAA
387 AGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
*
16078826 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGGGACACTTT
452 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
*
16078891 TTTCAAATGGCCACAAAATCTTGTACACATCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAAA
517 TTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAAA
* *
16078956 AAAAATACAAGGATCACATCTGCCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAA
582 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAA
* * *
16079021 TCTAAAACCGTAAAAAGTTTTGAAGATCGTGAATAATAGAAAATGAGTCGTCTTGCCATGAAACT
647 TCTAAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
*
16079086 TCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
712 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
* * *
16079151 AAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCCATGGCTTGCACATCTCGTCTC
777 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTC
* * *
16079216 TCTGGCTGACGTAATGCCCGCCCGCCCGCT-ATTTCGTCGGTTGGCTTAGGCTTAC
842 TCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCTTAC
* * * *
16079271 GGAGTTCATTCCTAGTCTAAGATTAGATCAAACTGAGGGTTGTGGCAACAGGATCGACAGCATGC
1 GGAGTTCAATCCTAGTCTAAGATTAGATCAAACCGAGGGTTGTGGCAGCAGGATCGACAGCACGC
* * * * * * *
16079336 GGAGGGGGACCTGGCCGATTCCCGGCTAT-CGCATTCCGCCCCTCTGGCCGGTC-GAGTGCCCGC
66 AGAGGGGGACCCGACCGATCCCCGGCT-TGCGCATCCCGCCCCTCTGGCCGGACTGAGCGCCCGC
* * *
16079399 ATGCTCGTTTCGTGGGTTGACTTAGGCATACGGGGTTCATTCCCAGTCTAAGCATATGGAGTTCA
130 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * * * * *
16079464 ATCCCAGTCTAAGATTAGACCAAACCGCA-GGATGCAGCAGCACATGCTGGGCTCGAGCATGTAC
195 TTCCCAGTCTAAGATCAGACCAGACCG-AGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGC
* * *
16079528 TGGTGCCCCA-TTTTCTTCGTCGGGGCACCATCGCCAGG-GCATCGCCAGAGAACCGGACCGGCG
259 TGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCC-GGAGCATCGCCAGAGAACCTGACCGACG
** *
16079591 GCATTGTCGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTACTA
323 GCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTA
* *
16079656 GTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTTGAGAACTCATACCCCCTTAAAG
388 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
*
16079720 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGGGACACTTTT
453 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
*
16079785 TTCAAATGGCCACAAAATCTTGTACACATCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAAAA
518 TTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAAAA
* *
16079850 AAAATAAAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAT
583 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAT
* * *
16079915 CTAAAACCGTAAAAAGTTTTGAAGATCGTGAATAATAGAAAATGAGTCGTCTTGCCATGAAACTT
648 CTAAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* *
16079980 CACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGTCATAAAAATGGCATTGGCATGCA-A
713 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
* * **
16080044 AATATGAAGATGTCCCTAAACCCACCTACCACCCTATCGATCCCCGGCTTGCTTATCCCGTCTCT
778 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCT
*
16080109 CTGGCCGACGTAGTGCCCGCCCGTCCGCCCACCTGCTCGTTTCGTCGGTTGGCTTAGGCGTAC
843 CTGGCCGACGTAGTGCCCG--C--CCG--C-CC-GCTCGTTTCGTCGGTTGGCTTAGGCTTAC
* * * * *** ** *
16080172 GGAGTTGATTCCTAGTCTAACATTGGATTGGACCGAGGGTTGCAGTAGCAGGATCGACAGCACGC
1 GGAGTTCAATCCTAGTCTAAGATTAGATCAAACCGAGGGTTGTGGCAGCAGGATCGACAGCACGC
* * * * * *
16080237 AGAGGGGGACCCGACCGATCCCCGGCGTGCGTATCTCGCCCCTCTGACC-GACAGAGCGCCCGTA
66 AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGACTGAGCGCCCGCA
* * *
16080301 CGCTCGTTTTC-TGGGTCGACTTAGGCATACGGAGATCATTCCCAGTCTAATCATACGGAGTTCA
131 CGCTCG-TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* ** * *
16080365 TTCCCAGTCTAAGATCAAACCAGA-CG-GGGTTGTGGCAGAACATGCTGGGCTCGAGCATGTGCT
195 TTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCT
* * * * * * *
16080428 GGTGTCACATTTTTCTTCGTCGAGGTACCGTCGTCGGAGCATCGTC-GAAGAACCTGACCGTCGG
260 GGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCAG-AGAACCTGACCGACGG
* * * *
16080492 TATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGGTTGTGTGCGCATGATGTGC-ATTGGGTGCT
324 CATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGG-TGTGCGCACATGATGTGCGA-TGGGTGCT
*
16080556 AGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAA
387 AGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * *
16080621 GAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGCGGACACTTT
452 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * * * * *
16080686 TTTCAAATAGTCACAAAATCTTGTACACTTCAATTTTTTAGCTGAATTTTTTTTTTGCATGCCAA
517 TTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCT-AAATTTTTTTGTGCATGCCAA
* * * * *
16080751 CAAACATACAAGGATCATGTCTACTACGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAA
581 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAA
* * * * *
16080816 ATCCT-GAACC-TCAAAAAGTTTTGAAAATCTTGAAAAATAGAAAACGGGTCATCTTGCCATCAA
646 AT-CTAAAACCGT-AAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* *
16080879 ACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAG
709 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* ** * *
16080944 CAAAAATATGAAGATGTGCCTAAACCCACCTTTCACCCTATCGACCCACGGCTTGCGCATCCCGT
774 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGT
* * **
16081009 CTCTCTGGCCGAAGTAGTGCCCGCCCGCCCGGTCGTTTCGTCGGTTGGCTTAGGAATAC
839 CTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCTTAC
* * * * * * ** ** * **
16081068 GGAGTTCATTCCCAATCTAAGATTGGACCGAATTGAGGGTTACGGCAGTAGGATCGGTAGCACGC
1 GGAGTTCAATCCTAGTCTAAGATTAGATCAAACCGAGGGTTGTGGCAGCAGGATCGACAGCACGC
* * * * * * * *
16081133 AGAGGGGGACCTGACCGATCCCCGGCTTGCGTAACCCACCCGTCTCG-CTGACTGATCGCCCGCA
66 AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGACTGAGCGCCCGCA
* *
16081197 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCGT
131 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * *
16081262 TCCCAGTCTAAGATCGGATCAGACTGAGGGTTGC-GACAGCACATGCTGGGCACGGGCATGTGCT
196 TCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAG-CAGCACATGCTGGGCTCGGGCATGTGCT
* * *
16081326 GGTG-CAGCATTTTTCTTCG-CTTGGGCACCATCGTCGGAGCATCGCCAGAGAACCTGATCGACG
260 GGTGCCA-CATTTTTCTTCGTC-GGGGCACCATCGCCGGAGCATCGCCAGAGAACCTGACCGACG
* * **
16081389 GTAATGGGGTTCCGGA-GATC-GGGGGGCC-GGGGGGTGTGCATACATGATGTGCGATGGGTGCT
323 GCATTGGGGTTCC-GACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
*
16081451 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA-CTCGAGAACTCACACCCCCTTAAA
387 AGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* **
16081515 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGATTCTTT
452 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* *
16081580 TTTCAAAT-GCTCACAAAATCTTGTACACTTTGAGTTTTTAGCTAAAGTTTTTTGTGCATGCCAA
517 TTTCAAATGGC-CACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAA
* **
16081644 AAAAAATACAAGGATCATGTCTACCAAGTTTGGGG-CAAAACTCCTTCTGAAAAAATTTTAAAAA
581 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAA
** *
16081708 ATCTTGAACCGTAAAAAGTTTTGAAAATCGTAAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
646 ATCTAAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* **
16081773 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCTTAAAAATGGCATTGGCACACA
711 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
* * * *
16081838 -ATAATATGAAGATGTGCCTAAACCCACTTACCACCCTATCGATCCACGGCTTGAACACCCCGTG
776 GA-AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTC
* * * * *
16081902 TCTCTGGCCGGCGTAGTGCTCGCCTGCCTGCCCACCCGTTCGTTTCGTCGGTTGGGTTAGGCATA
840 TCTCTGGCCGACGTA--G-T-G-C--CC-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCTTA
16081967 C
897 C
* * * * ** *
16081968 GGAGTTC-ATTCTCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGTAGCACA
1 GGAGTTCAATCCT-AGTCTAAGATTAGATCAAACCGAGGGTTGTGGCAGCAGGATCGACAGCACG
* * * * * *
16082032 CAGAAGGGGACCCGACAGATCCCCGGCTTACGTATCCCACCCCTCTGGCCAG-CTGAGCGCCCGC
65 CAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGACTGAGCGCCCGC
* * *
16082096 ACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG-AT-C--AG----
130 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
**
16082153 -----A--C------C-G---A-ACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCT
195 TTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCT
* * * *
16082200 GGTGTCACATTTTTCTTCATCGGGGCACCATCGCCGGAGTATCGTCAGAGAACCTGACCGACGGC
260 GGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCAGAGAACCTGACCGACGGC
* * *
16082265 ATTGGGGTTCCTG-CGATCGGGAGGGCCGAGGGGGTGTGCGCATATGAT
325 ATTGGGGTTCC-GACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGAT
16082313 AATGGCATTG
Statistics
Matches: 4298, Mismatches: 449, Indels: 184
0.87 0.09 0.04
Matches are distributed among these distances:
874 105 0.02
875 12 0.00
876 16 0.00
878 1 0.00
879 1 0.00
885 1 0.00
887 1 0.00
888 6 0.00
889 48 0.01
890 128 0.03
891 115 0.03
892 476 0.11
893 1128 0.26
894 150 0.03
895 419 0.10
896 332 0.08
897 209 0.05
898 167 0.04
899 60 0.01
900 265 0.06
901 242 0.06
902 147 0.03
903 190 0.04
904 79 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (897 bp):
GGAGTTCAATCCTAGTCTAAGATTAGATCAAACCGAGGGTTGTGGCAGCAGGATCGACAGCACGC
AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGACTGAGCGCCCGCA
CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
TCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTG
GTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCAGAGAACCTGACCGACGGCA
TTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTA
CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
AAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAAAAAAA
ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTA
AAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTG
GCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCTTAC
Found at i:16079453 original size:26 final size:26
Alignment explanation
Indices: 16079424--16079476 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16079414 GTTGACTTAG
* *
16079424 GCATACGGGGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
*
16079450 GCATATGGAGTTCAATCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
16079476 G
1 G
16079477 ATTAGACCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAGTCTAA
Found at i:16080355 original size:26 final size:26
Alignment explanation
Indices: 16080326--16080376 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
16080316 TCGACTTAGG
16080326 CATACGGAGATCATTCCCAGTCTAAT
1 CATACGGAGATCATTCCCAGTCTAAT
*
16080352 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGATCATTCCCAGTCTAA
16080377 GATCAAACCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
CATACGGAGATCATTCCCAGTCTAAT
Found at i:16081257 original size:26 final size:26
Alignment explanation
Indices: 16081221--16081273 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16081211 GTTGACTTAG
*
16081221 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16081247 GCATACGGAGTTCGTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16081273 G
1 G
16081274 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16084846 original size:705 final size:703
Alignment explanation
Indices: 16083480--16084876 Score: 2142
Period size: 705 Copynumber: 2.0 Consensus size: 703
16083470 GCACCCGTAC
* *
16083480 GCTCGATTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGA
1 GCTCGATTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACAGA
* * * * *
16083545 GGGTTGCAGTAGCACATGCTGCGGTCGGGCATGTGCTGGTGCTGCATTTTTTTTCGTCGGGGCAC
66 GGGTTGCAGTAGCACATGCTGCGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCAC
* * *
16083610 CATCGCCGGAGCATCACCGGAGAACCTGACCGATGGCATTGGGGTTCCGGCAATCGGCAGGGCCG
131 CATCGCCAGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACAATCGG-AGGGCCG
* *
16083675 GGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGATACTTGGCTCCTATATTGGCCCCCTATCG
195 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGATACTTGGCTCCTATATTGGCCCCCTATCC
* * * * *
16083740 CTTATCAAACCTCGAGAACTCACACCCCCTTAAATAGCATATGAGATTTTATAGGTTTGCTGCCA
260 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATATAAGATTTTACAAGTTTGCTGCCA
* * * *
16083805 GTATCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGACACAAAATCTTGTACACTTT
325 GTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGACAAAAAATCTTGAACACTTC
* * * *
16083870 GAGTTTTTAGCTGATTTTTTTTGTGCATGCCAACAAAAAGAAATGGATCACGTCTACCCAGTTTG
390 GAGTTTTTACCTGAATTTTTTTGTGCATGCCAACAAAAAGAAATGGATCACGTCTAACAAGTTTG
* * *
16083935 GAGGCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCTGAACCATAAAAAGTGTCGAAAATCATG
455 GAGGCAAAAATACTTCCAAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTGTCGAAAATCATG
16084000 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGA
520 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGA
*
16084065 ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATTAAGATGTACCCAAACCCACCTACC
585 ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTACCCAAACCCACCTACC
16084130 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGGGCCCGCCT
650 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGGGCCCGCCT
* *
16084184 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCA-
1 GCTCGATTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CAG
* * *
16084248 AGGGTTGCGGTAGCACATGCTAG-GCTCAGGTATGTGCTGGTGCCGTATTTTTCTTCG-CTAGGG
65 AGGGTTGCAGTAGCACATGCT-GCGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-AGGG
* * *
16084311 CACCATCGTCAGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCAAGG-GG
128 CACCATCGCCAGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACAATC--GGAGG
* *
16084375 GCCGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC-CCTTATATTGGCCCT
191 GCCG-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGATACTTGGCTCC-TATATTGGCCCC
*
16084439 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTAAGATTTTACAAGTTTG
254 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATATAAGATTTTACAAGTTTG
* * * *
16084504 CTGCCAGTAGCCATTAAAGTGTTTGAAATTGGGACAGTTTTTTCAAATGGTCAAAAAATCTTGAA
319 CTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGACAAAAAATCTTGAA
* * *
16084569 CCCTTCGAGTTTTTACCTGAATTTTTTTGTGCATGCCAACAAAAATACAA-GGATCATGTCTAAC
384 CACTTCGAGTTTTTACCTGAATTTTTTTGTGCATGCCAACAAAAAGA-AATGGATCACGTCTAAC
* * * * *
16084633 AAGTTTGG-GGCCAAAACTACTTCCAAAAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTTGA
448 AAGTTTGGAGG-CAAAAATACTTCCAAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTGTCGA
* **
16084697 AAATCTTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCA
512 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCA
* *
16084762 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCCAAACC
577 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTACCCAAACC
16084827 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
642 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
16084877 GCATAGTGCC
Statistics
Matches: 627, Mismatches: 57, Indels: 17
0.89 0.08 0.02
Matches are distributed among these distances:
703 1 0.00
704 170 0.27
705 452 0.72
706 4 0.01
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (703 bp):
GCTCGATTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACAGA
GGGTTGCAGTAGCACATGCTGCGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCAC
CATCGCCAGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACAATCGGAGGGCCGG
GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGATACTTGGCTCCTATATTGGCCCCCTATCCC
TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATATAAGATTTTACAAGTTTGCTGCCAG
TAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGACAAAAAATCTTGAACACTTCG
AGTTTTTACCTGAATTTTTTTGTGCATGCCAACAAAAAGAAATGGATCACGTCTAACAAGTTTGG
AGGCAAAAATACTTCCAAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTGTCGAAAATCATGA
AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAA
TTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTACCCAAACCCACCTACCA
CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGGGCCCGCCT
Found at i:16085137 original size:26 final size:26
Alignment explanation
Indices: 16085087--16085138 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
16085077 TTGACTTAGT
* ** *
16085087 CATATGGAGTTCATTCTTAGTCTAAG
1 CATACGGAGTTCATTCCCAGACTAAG
16085113 CATACGGAGTTCATTCCCAGACTAAG
1 CATACGGAGTTCATTCCCAGACTAAG
16085139 ATTGCACTGG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGACTAAG
Found at i:16086894 original size:26 final size:26
Alignment explanation
Indices: 16086865--16086917 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16086855 GTTAACTTAG
16086865 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16086891 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16086917 G
1 G
16086918 ATTGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16089533 original size:26 final size:26
Alignment explanation
Indices: 16089503--16089555 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16089493 GTTGACTTAG
16089503 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16089529 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16089555 G
1 G
16089556 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16089956 original size:895 final size:881
Alignment explanation
Indices: 16084136--16092937 Score: 10019
Period size: 877 Copynumber: 10.0 Consensus size: 881
16084126 TACCACCCTA
* * * * * *
16084136 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC-G-G-GCCCGC-CTGCTCGTTTCGTCG
1 TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCAC-GCTCGTTTCGTGG
* * *
16084197 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-AGAC---C-AGACC-AAG-GGT
65 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAGACAGTCTGGACCGGAGAGGT
* ** * * * * *
16084253 TGCGGTAGCACATGCTAGGCTCAGGTATGTGCTGGTGCCGTATTTTTCTTCGCTAGGGCACCATC
130 TACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGCACCATC
* * * * *
16084318 GTCAGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCAAGGGGGCCGAGGG
195 G-CGGAGCATCACCGGAGAACCTGACCGGCAGCATTGGGGTTCCGACGATC-GGGGGGCCG-GGG
*
16084383 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTC
257 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * *
16084448 ATCAAACCTCGAGAACTCACACCCCC-TTAAAGAGCATTTAAGATTTTACAAGTTTGCTGCCAGT
322 ATCAAACCTCAAGAACTCACACCCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* * * * * *
16084512 AGCCATTAAAGTGTTTGAAATTGGGACAGTTTTTTCAAATGGTCAAAAAATCTTGAACCCTTCGA
387 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * *
16084577 GTTTTTACCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTAACAAGTTTGGG
452 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * ** * ** *
16084642 GCCAAAACTACTTCCAAAAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTTGAAAATCTTGAA
517 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAA
*
16084707 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAAT
582 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* *
16084772 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCCAAACCCACCTACCAC
647 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCAC
*
16084837 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGC-CCGCCCGCCCGTCCG
712 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCCGCCCG--C--CCG
* * ** * * * **
16084901 CCTGGTCGTTTCGTCGGTTGGCTTTGAAATACGGAGTTCATTCCCAGTCGAAGATTGGACTGGAC
773 CCT-CT-GTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTAGACCAGAC
* * * * * * * * *
16084966 CGAGTGTTGCGGCAGCAGGATCAGTAGCACGTAGAGGCGGACCCGA
836 CAAGGGTTACGACAGCAGGATCGGCAGCACGCAGAGGGGGACCCGG
* * * * * * **
16085012 CCGATCCCCAGCTTGCACATCCCGCCCCTTTGGCTGGCTGAACGCCCGCACGCTCATTTTATGGG
1 TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* * ** *
16085077 TTGACTTAGTCATATGGAGTTCATTCTTAGTCTAAGCATACGGAGTTCATTCCCAGACTAAGATT
66 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-GAG---A----CAGTCT--G---
* * * *
16085142 GCACTGGATCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
118 G-ACCGGA--GA-GGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* * * * * * * * *
16085207 TCG-TCGGAGCACCATCTTCGGAGCATCGCCAGAGAACCTGATCGACGGCATTGGGGTTCAGACA
179 TCGCT-GGGGCACCATC-GCGGAGCATCACCGGAGAACCTGACCGGCAGCATTGGGGTTCCGACG
* * * * *
16085271 ATCGGGGGGGCC-AGGGGGTGTGCGCACATGATTTACGATGGGTGCTGGTATTTAGCCCTTATAT
242 ATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* * * * *
16085335 TGGCCCCCTATCCCTCGTCCAACCTCGAGAACTCACACCCCC-TGAGAGAGCATTTGAGATTTTA
306 TGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTTAAAGAGCATTTGAGATTTTA
*
16085399 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGTGGACAC--TTTTCAAATGGTCACAAA
371 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* *
16085462 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATACCAACAAAAATACAAGGATCAT
436 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* * *
16085527 GTCTACCAAGTTTGGGGCCAAAACTCCTACCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAG
501 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG
*
16085592 TTTAAAAAAT-AGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
566 TTTCAAAAATCA-TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* *
16085656 GGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGC
630 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTAC
* *
16085721 CTAAACCCGCCTACCACCCTATCAATCCACGGCTTGCGCATCCCG------T---C--C--A---
695 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG
* * ** * * *
16085770 C-CCGCCTGCTCGCC-C-GTTTCGTCACTTGGCTTAGGCATATGGAGTTCATTCCCAGTCGAAGA
760 CTCCGCCCGCCCGCCTCTGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGA
* * * * * * * *
16085832 TCAGACCAGACCGAGGGTTAC-AGTAGCAAGATCAGCAGTACACAGAGGGGGACCCGA
825 TTAGACCAGACCAAGGGTTACGA-CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGG
* * * **** * *
16085889 CCTATCCCCGGCTTGCGCATCCCACCCCTCTGGCCAATTGAGCGCCCGCACGCTCGTTTCATTGG
1 TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* * * *
16085954 TTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGCATAAGGAGTTCATTGCCAATCGAAGATT
66 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT-ACGAG---A----CAGTC------T
* * *
16086019 GGACCGGACTAAGGGTTACGCCAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
117 GGACCGGA--GA-GGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* * * * * ** *
16086084 TTG-TCGGGGTACCATCGCCGTG-GCATCATCGGAGAACCTAATCGGTGGCATTGGGGTTCCGAT
179 TCGCT-GGGGCACCATCG-CG-GAGCATCACCGGAGAACCTGACCGGCAGCATTGGGGTTCCGAC
*
16086147 GATCGGGGGGCC-GGGGGGTGTGCGCAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
241 GATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* * * * *
16086211 CGGCCCCGTATCCCTCATCAAACCTCGAGAACTCACACGCCC-TTCAAGAGCATTTGAGATTTTA
306 TGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTTAAAGAGCATTTGAGATTTTA
* *
16086275 CAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAA
371 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * * *
16086340 ATATTATACACTTCGAGTTTTTGGCTAAATTTTTTT-TGCATGCCAACAAAAATACAAGGATCAC
436 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* * * * *
16086404 GTCTTCGAAGTTTGGGTCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACTGTAAAAAG
501 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG
** * * * *
16086469 TTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTGTTGCTATGAAACTTGACGTGAAAGCTTAAG
566 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * * * *
16086534 GGACCATTGTATTAATTTACAAGCCATAAAAATGGCATTGGCACGTAAAAATATGAAGATGTGCC
631 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACC
* * *
16086599 TAAACCCACCTACCA-CCAAGTCGATTCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG
696 TAAACCCACCTACCACCCTA-TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG
* * *
16086663 C-CCGCCCGCCAGCCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAG
760 CTCCG--C-CC-GCCC-G-CCTCT-GTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAG
* * * * * *
16086727 TCTAAGATCAGACCAGAGCAAGGGTTAC-AGCGGCAGGATTGGTAGCACGTAGAGGGGGACCC-G
818 TCTAAGATTAGACCAGACCAAGGGTTACGA-CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGG
* * * * * * * *
16086790 ACTGATCCCCAGCTTGCCCATCCCGCCCCTCTGGCCGGTTGAGCACCTGCATGCTCGTTTCGTGG
1 TC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGG
*
16086855 GTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTTCCAGTCTAAGAT
65 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-GAG---A----CAGTC------
* * * ** ** * ** *
16086920 TGGATCAGATCAAGGGTTGTGGTAGCACTTGCTGGGCTCGGGCATGTGCTGGTGATGCATTTCTC
116 TGGACCGGA--GA-GGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
* * * * * * * *
16086985 TTCGTTGGGGTACCATCGCCGGAGTATCGCCGGAGAACCTGACCGAC-GACATTAGAGTTTCGAC
178 TTCGCTGGGGCACCATCG-CGGAGCATCACCGGAGAACCTGACCGGCAG-CATTGGGGTTCCGAC
*
16087049 GATCGGGGGGGCCGGGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTA-TCTGGCCCTTAT
241 GATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT-TGGCCCTTAT
* *
16087113 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCATTAAAGAGCATTTGAGATTT
304 ATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTTAAAGAGCATTTGAGATTT
* * * *
16087177 TCCAGG-TTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTCTTTCAAATGGTCACA
369 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* * * * **
16087241 AAATCTTGTACACTTCGAGTTTCTAGCTGAAGTTTTTTATGCATGCCAAGAAAAATGGAAGGATC
434 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
* * * * * *
16087306 ACATCTACCACGTTTGGGGCCAAAACTCCTTCCGAGAAAACTTTAAAAAATCCCGAATCAT-AAA
499 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAA
* * * *
16087370 AGTTTGAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGGCATGAAGCTTCACGTGAAGGCTTA
564 AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
* ** * * *
16087435 AGGGACCATTCTATGAATTTACAAGATATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTG
629 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTA
* * *
16087500 CCTAAAGCCCACCTACCACCCTATTGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGACGTAG
694 CCTAAA-CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
* ** * * * *
16087565 TGC-CCTCCCATCCGCTCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCT
758 TGCTCCGCCCGCCCGC-CTCT-GTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCT
* * * * * * * *
16087629 AAGATCAGACCAGAGCAAGGGTTGCGGCAGCAGGATCGGTAGCACGTAGAAGGGGACCCGA
821 AAGATTAGACCAGACCAAGGGTTACGACAGCAGGATCGGCAGCACGCAGAGGGGGACCCGG
* * * * * * *
16087690 CCAATCCCCGGCTTGCCCATCCCACCCCTCTGGCCGGCTGAGCGCCTGCATGCTCGTTTCGTGGG
1 TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* * * * * *
16087755 TTGAGTTCGGCATACGTACTTCATTCCCAGTCCAAG-AT-CG-G--A--CTGGA-CTGAG-GGTT
66 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAGACAGTCTGGACCGGAGAGGTT
* * * * * * *
16087811 ACGACAGCACATGCTGGGCTCGAGCTTGTGCTGCTGTCTCATTTTTCTTCACCGGGGCACCATCG
131 ACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCG
* * ** * *
16087876 CTGGAGCATCACTGAAGAATGTGATCGACAGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGG
196 C-GGAGCATCACCGGAGAACCTGACCGGCAGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGG
* * *
16087941 TGTGCACACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAAC
260 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * * * *
16088006 AAACCTCGAGAAGTCACACCCCCTTTAAAGAGAATTTGAGACTTTACAGGTTTGCTGCTAGTAGC
325 AAACCTCAAGAACTCACACCCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* *
16088071 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAATTGGTCACAAAATCTTGTACACTTTGAGTT
390 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * *
16088136 TTTAACTGAATTGTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
455 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * * *
16088201 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAATCGTAAAAAGTTTCGAAAAGCGTAAAAAA
520 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAA
* * *
16088266 TAGAGAACGAGTCGTCTTGCCATGAAACTTCACGTGATGGCTTCAGGGACCATTGTATGAATTTA
585 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* * *
16088331 CAAGCCATAAAAATGGAATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCT
650 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCT
** * *
16088396 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTATAGTGC-CCGCCCACCTG-CTC-GT
715 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCCGCCCGCCCGCCTCTGT
* ** * *
16088458 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACTTGATCGAGGGTTA
780 TTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTAGACCAGACCAAGGGTTA
* *
16088523 CGACAGCAGGATCGGCAGCACGCAGAGGTGGACCCAG
845 CGACAGCAGGATCGGCAGCACGCAGAGGGGGACCCGG
* * * * * * *
16088560 CCGATCCCCAGCTTGCGCATCCTGCCCCTTTGCCTGGCTGACCACCCGCACGCTCGTTTCGTGGG
1 TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* * * * * *
16088625 TTGACTTAGGCATACAGAGTTCATTCACAGCCTAAG-GT-TG-GAC---C-GAACC-GAG-GGTT
66 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAGACAGTCTGGACCGGAGAGGTT
** * * *
16088681 ACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTCTCTTTGCTGGGGCACCATCG
131 ACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCG
* ** * * * ***
16088746 TTGGAGCATCGTCGGAGAACCTGACCGGC-GACATTGAGGTTTCGGCGATCGGGGGGGAAGGGGG
196 -CGGAGCATCACCGGAGAACCTGACCGGCAG-CATTGGGGTTCCGACGATCGGGGGGCCGGGGGG
* *
16088810 GTGTGCGCACATGATGTGCTATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCAT
259 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
*
16088875 CAAACCTCGAGAACTCACACCCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
324 CAAACCTCAAGAACTCACACCCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* *
16088939 CCATTAAAGTGTCTAAAATGGGGACACTTCTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
389 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * *
16089004 TTTTAGCTGAATTGTTTTGTGCATGCCAACAAAATTACAAGGATCACGTCAACCAAGTTTGGGGC
454 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * *
16089069 CAAAACTCCTTCCGAAAAAATTTCAAAATATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAA
519 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAA
* * * *
16089134 ATAAAAAATGAGTCGTCTTGGCATGAAGCTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
584 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * * *
16089199 ACAAGCCATAAAAATGGCATTGGCAGGAAGAAATATGAAGATGCACCTAAACCGACCTACCACCC
649 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCC
** * * *
16089264 TATTAATCCATGGCTTACGGATCCCGTCTCTCTGGCCGGCGTAGTGCT-CGCCCGCCCG-CTCT-
714 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCCGCCCGCCCGCCTCTG
* * **
16089326 TTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCTAGTCTAAGATCAGACCAGACTGAGGGTT
779 TTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTAGACCAGACCAAGGGTT
* **
16089391 GCGACAGCAGGATCGATAGCACGCAGAGGGGGACCCGG
844 ACGACAGCAGGATCGGCAGCACGCAGAGGGGGACCCGG
** * * *
16089429 TCGATCCCCGGCTTGCGCATTTCGCCCCTCTGGCTGGCTGAGCACCCGCACACTCGTTTCATGGG
1 TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
16089494 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
66 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-GAG---A----CAGTCT--G---
* * **
16089559 AGACCGGATCGATGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCTTATTTTTCT
118 -GACCGGA--GA-GGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
** * * * **
16089624 TCGCTGGGGTGCAATCGTCGGAGCATCGCCGGATAACCTGACCAACAGCATTGGGGTTCCGACGA
179 TCGCTGGGGCACCATCG-CGGAGCATCACCGGAGAACCTGACCGGCAGCATTGGGGTTCCGACGA
16089689 TCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
243 TCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* * *
16089754 GCTCCCTATCCCTCATCAAACCTCAAGAACTCACACCCTC-TTAAAGAGCATTTGAGATTTTATA
308 GCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTTAAAGAGCATTTGAGATTTTACA
*
16089818 GGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
373 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * *
16089883 CTTGTACACTTCAACTTTTTAGCTG-ATGTTTTTTGTGCATGCCAACAAAAATACAAGGATCACC
438 CTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
* *
16089947 TCTACCAAGTTTGGGACCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGT
502 TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGT
* *
16090012 TTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAG
567 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
* * *
16090077 GACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTACGT
632 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCT
* ** * * **
16090142 AAACCCCCCTACTGCCCTATCGATCCACAGCTTGTGCATCCCGTCTCTCTGGCAAGCGTAGTGCT
697 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCT
* * * *
16090207 CGCCCGTCCGCCCGCC-CGTTCGTTTCGTCGGTTGGCTTAGGCGTACGGAGTTCATTCCCAATCT
762 ---CCGCCCGCCCGCCTC--T-GTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCT
* * * * * * *
16090271 AAGATTGGATCGGA-TAAGGAGTTACGACAGTAGGATTGGCAGCACGCAGAGGGGGACCCGA
821 AAGATTAGACCAGACCAAGG-GTTACGACAGCAGGATCGGCAGCACGCAGAGGGGGACCCGG
* * * * * **
16090332 TCGATCCCCGACTTGCGCATCTCGCCCCTCTGGCCGGCTAAGTGCCCGCACGCTTATTTCGTGGG
1 TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* * * *
16090397 TTGGCTTAGTCATATGGAGTTCATTCCCAGTCTAAG-AT-C-CGAC---C-GGACC-GAGA-GTT
66 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAGACAGTCTGGACCGGAGAGGTT
* * * * *
16090453 ACGACAGCACATTCTGGGCTCGGGCATGTGCTGGT-TCACATTTTTCTTCACCGGGG-----T--
131 ACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCG
* * * *
16090510 ---ACCATCACCGGAGAACCTGATCGGCGGCATTGGGGTTCC-AGTGATCGGGGGGCC-GGGGGG
196 CGGAGCATCACCGGAGAACCTGACCGGCAGCATTGGGGTTCCGA-CGATCGGGGGGCCGGGGGGG
* *
16090570 TGTGCACACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
260 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * * * *
16090635 AAACCTCAAGAACTCACA-CCCCGTTAAAAAGAATTTGAGATGTTACAGGTTTGCTGCCACTAGC
325 AAACCTCAAGAACTCACACCCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* *
16090699 CATTAAAGTGTCTGAACTGGGGACACTTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTT
390 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
*
16090764 TTTAGTTGAATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
455 TTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* *
16090829 CAAAACTCCTTCCG-AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAA
519 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAA
* *
16090893 ATAGAAAACGAGTCGTCGTGCCATGAAACTTCACGTGAAGGCTTAATGGACCATTGTATGAATTT
584 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* *
16090958 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGCACCTAAACCGACCTACCACCC
649 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCC
* *
16091023 TATCGATCCACGGCTTGCGCAACCCGTCTCTCTGGCTGGCGTAGTGC-CCGCCCTCCCGCCCGCC
714 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCCG----CCCGCCCG-C
* * ** *
16091087 CGCTTGTTTCTTCGGTTGGCTTAATCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCA
774 CTC-TGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTAGACCAGACCA
* * * * *
16091152 AGGGTTACGGCAACTGGATCGGTAGCACGCAGAGGGGGACCCGA
838 AGGGTTACGACAGCAGGATCGGCAGCACGCAGAGGGGGACCCGG
* * * *
16091196 TCGATCCTCGGGTTGCGCATCCCGCCCCTCTGGCCT-GCTGAGCGCCTGCACGGTCGTTTCGTGG
1 TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG-CTGGCTGAGCGCCCGCACGCTCGTTTCGTGG
* *
16091260 GTTGACTTAGGAATACGAAGTTCATTCCCAGTCTAAG-AT-CG-G--A-TC-GGACCGG-G-GGT
65 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAGACAGTCTGGACCGGAGAGGT
** * * *
16091316 TGTGACAGCACATGCTCGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTTGGGGCACCATC
130 TACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGCACCATC
* ** * * * *
16091381 ACCGGAGCATCATTGAAGAACCTGACCGG-TGACGTTGGGGTTCCGACGATCGGGGTGCCGGGGG
195 -GCGGAGCATCACCGGAGAACCTGACCGGCAG-CATTGGGGTTCCGACGATCGGGGGGCCGGGGG
* * * *
16091445 GGTGTGCGCACATGATGTGCAAAGGGTGCTGGTACATGGCCCTTGTATTGGCCCCCTATCCCTCA
258 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
** * *
16091510 TCAAACCTTGAGAACTAACACCCCC-TTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTA
323 TCAAACCTCAAGAACTCACACCCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
*
16091574 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTGCAAATGGTCACAAAATCTTGTACACTTCGAG
388 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * *
16091639 CTTTTAGCTGAATTTTTTTGTGCATGCCAAGAAAAATACAAGGATCACGTTTACCAAGTTTGGGG
453 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * * ** * *
16091704 CCAAAAATCCTACCGAAAAAATTTAAAAAAATCTTGAACCGTAAAAAGGTTT-GAAAATCGTGAA
518 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAA-GTTTCAAAAATCATGAA
* * * *
16091768 AAATAGAAAATGAGTCGTCTGGTCATGAAACTTCACGTAAAGGCTTAAGGGACCATTGTATGAAT
582 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
** * * *
16091833 TTACAAGTTATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
647 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCAC
16091898 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCGCCCGCCCGCCCGA
712 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCT---CCGCCCG-CC--
* *** *
16091963 CTGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTGTGAGTCTAAGATTGGACCA
771 C-G-CCTC-TGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTAGACCA
* * ** * * *
16092028 GACCAAGGGTTACGGCAGCAAGATCGGCAATATGCGGAGGGGGAACCGG
833 GACCAAGGGTTACGACAGCAGGATCGGCAGCACGCAGAGGGGGACCCGG
* * * * * * * *
16092077 TTGATTCCCTGCTTGCGCATCCCGCCCCTTTGGCCGGCTGAGTGCCCGAACGCTCGTTTCATGGG
1 TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* * * * * * **
16092142 TTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATATGGAGTTCATTCCTAG-TCTAAGAT
66 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA-CGAG-ACAGT-CTGGACCGGAGA-
* ** *
16092206 CGG--ACGGAACTG-A-GGGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCG-TCGGGG
127 -GGTTAC-G-ACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCT-GGGG
* ** * *
16092266 CACCATCGCCAGAGCATCGTCGGAGAACCTGACCGGCGGCATTAGGGTTCCGACGATCGAGGGGG
188 CACCATCG-CGGAGCATCACCGGAGAACCTGACCGGCAGCATTGGGGTTCCGACGATC--GGGGG
*
16092331 GCCGGGGGGGTGCGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
250 GCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* *
16092396 ATCTCTCA-CAAACCTCGAA-AACTCTCA-CCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTG
315 ATCCCTCATCAAACCTC-AAGAACTCACACCCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTG
16092458 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
379 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
*
16092523 CACTTCGAGTTTTTAGTTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC-
444 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
*
16092587 AGTTTGGGGCCAAAACTCCTTCCG-AAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAA
509 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAA
*
16092651 ATCATGAAAAATAGAAAACGAGTCGTCGTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
574 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
16092716 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCA
639 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCA
* * *
16092781 CCTACCACCC-ATCGATCCACGACTTGCGCATTCCGTCTCTCTGGCCGGCTTAGTGCCCGTCCGC
704 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-TCCGC
* * *
16092845 CCGCCCGCCCATCCGCTCGTTTCTTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGA
766 CCGCCCG-CC-T---CT-GTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGA
* * * *
16092910 TTGGACCAGACCGAGGGTTGCGGCAGCA
825 TTAGACCAGACCAAGGGTTACGACAGCA
16092938 CATGCTGGGC
Statistics
Matches: 6842, Mismatches: 870, Indels: 414
0.84 0.11 0.05
Matches are distributed among these distances:
860 3 0.00
863 3 0.00
864 616 0.09
865 136 0.02
866 2 0.00
869 563 0.08
870 367 0.05
871 3 0.00
872 95 0.01
873 118 0.02
874 230 0.03
875 123 0.02
876 307 0.04
877 962 0.14
878 67 0.01
879 49 0.01
880 6 0.00
881 189 0.03
882 6 0.00
883 6 0.00
884 2 0.00
885 8 0.00
886 9 0.00
887 1 0.00
888 3 0.00
889 5 0.00
890 130 0.02
891 166 0.02
892 118 0.02
893 176 0.03
894 79 0.01
895 571 0.08
896 4 0.00
897 4 0.00
898 4 0.00
899 203 0.03
900 7 0.00
901 312 0.05
902 302 0.04
903 538 0.08
904 236 0.03
905 113 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (881 bp):
TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAGACAGTCTGGACCGGAGAGGTT
ACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCG
CGGAGCATCACCGGAGAACCTGACCGGCAGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGT
GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
AACCTCAAGAACTCACACCCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
AAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAAT
AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTA
TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCCGCCCGCCCGCCTCTGTT
TCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTAGACCAGACCAAGGGTTAC
GACAGCAGGATCGGCAGCACGCAGAGGGGGACCCGG
Found at i:16092181 original size:26 final size:26
Alignment explanation
Indices: 16092151--16092203 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16092141 GTTGACTTAG
16092151 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
*
16092177 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
16092203 G
1 G
16092204 ATCGGACGGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:16093788 original size:26 final size:26
Alignment explanation
Indices: 16093752--16093802 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16093742 GTTGACTCAG
* *
16093752 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
16093778 GCATACAGAGTTCATTCCCAATCTA
1 GCATACAGAGTTCATTCCCAATCTA
16093803 TCAAGTTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:16094333 original size:25 final size:26
Alignment explanation
Indices: 16094299--16094348 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 26
16094289 GTTGACTCAG
*
16094299 GCATACGGAGTTCATTCC-AGTCTAA
1 GCATACGGAGTTAATTCCTAGTCTAA
16094324 GCATACGGAGTTAATTCCTAGTCTA
1 GCATACGGAGTTAATTCCTAGTCTA
16094349 TGATCGGACC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 17 0.74
26 6 0.26
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCTAGTCTAA
Found at i:16095234 original size:26 final size:26
Alignment explanation
Indices: 16095204--16095254 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16095194 GTTGACTTAG
*
16095204 GCATACATAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
16095230 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATTCCCAGTCTA
16095255 CAATCGGATT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16096133 original size:26 final size:26
Alignment explanation
Indices: 16096097--16096147 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16096087 GTTGACATAG
16096097 GCATACAGAGTTCATTC-CTAGTCTAA
1 GCATACAGAGTTCATTCTC-AGTCTAA
16096123 GCATACAGAGTTCATTCTCAGTCTA
1 GCATACAGAGTTCATTCTCAGTCTA
16096148 GGATTGGACC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (26 bp):
GCATACAGAGTTCATTCTCAGTCTAA
Found at i:16096486 original size:901 final size:899
Alignment explanation
Indices: 16093808--16097434 Score: 4745
Period size: 900 Copynumber: 4.0 Consensus size: 899
16093798 ATCTATCAAG
16093808 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
1 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * *
16093873 G-AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACCAGT
66 GAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
* * *
16093937 CATCTCGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAA
131 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
16094002 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
196 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * *
16094067 CTTACGCATCCCGTCTCTCTGGTTGGCGTAGTACCCGCCCGCCCGCTCGCCCGA-TCGTTTCATC
261 CTTGCGCATCCCATCTCTCTGGCTGGCGTAGTGCCCGCCCG-CCGC-CGCCC-ACTCGTTTCATC
* *
16094131 GGTTGGCTTAGGCATACGGAGTTCATTCTCAGTCTAAGATCAGACCGGACCAAGGGTTACGGCAG
323 GATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGGCAG
* * * * * *
16094196 CAAGATGGACAGCACGCAGAGGGGGACTCGGCCGATCCCCAGCTTGCGCATCCCA-CCC-CTGGC
388 CAGGATCGACAGCACGCAAAGGGGGACCCGGCCGATCCCCGGCTTACGCATCCCACCCCTCTGGC
* * * * * *
16094259 CGGCTAACCACCCGCACGCTCATTTCGTGGGTTGACTCAGGCATACGGAGTTCATT-CCAGTCTA
453 CGGATGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTA
* * * * *
16094323 AGCATACGGAGTTAATTCCTAGTCTATGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGG
518 AGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATACTGG
* * *
16094388 GCTCGAGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGTACCATCACCGGAGCATCGTCAGAG
583 GCTCGGGCATGTGCTGGTGCCTCATTTTTCTTCACCGGGGCACCAT---CGGAGCATCGTCAGAG
* * * * *
16094453 AACCTGACCAGAGACATTTGGGTTTTCTGACGTTCGGGTGGGTG-TG-GGGGGTGTAGC-CGACA
645 AACCTGACCGGAGGCA-TTGGG-GTTCTGACGATCGGG-GGG-GCCGAGGGGGTGT-GCGC-ACA
* * * * *
16094515 TGTATGCGCAATGGGTTGCTGGTACTTGGCCCTTATGTTGG-CCCCTATCCCTCGTCAAACCTCG
704 TG-ATGTGCGATGGG-TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCA
16094579 AGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
767 AGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* *
16094644 GACTGAAATGGGGACACTTTTTTCAAATGTTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
832 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
16094709 A-T
897 ATT
* * * * *
16094711 TTTTTGTGCAAGCCACCAAAAATATAGGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCC
1 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
** * *
16094776 GAAAAAATTTTAAAAAATCCTGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGT
66 GAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
* *
16094841 CGTCTTGCCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAA
131 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
*
16094906 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGG
196 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * * * *
16094971 CTTGCGCATGCCATCTTTCTGGCTGGTGTAGAGCCCGCCCGCCCACCAG-CCGCTCGTTTCGTCG
261 CTTGCGCATCCCATCTCTCTGGCTGGCGTAGTGCCCGCCCG-CCGCC-GCCCACTCGTTTCATCG
* ** * * * * *
16095035 ATTGGGTTAGGCATACGGAGTTCATTCATAGTCTAAGATCAAACCGGACCGAGGGTTGCAGCAGT
324 ATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGGCAGC
* ** *** * * *
16095100 AGGATTGGTAGCACGCAAAGGGGGACCCGATTGATCCTCGGCTTACGCATCCCGCCACTCTGGCC
389 AGGATCGACAGCACGCAAAGGGGGACCCGGCCGATCCCCGGCTTACGCATCCCACCCCTCTGGCC
* * * * * *
16095165 GGCTGAACGCCCGCACTCTAGTTTCGTGGGTTGACTTAGGCATACATAGTTCATTCCCAGTCTAA
454 GGATGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* ** * * *
16095230 GCATACGGAGTTCATTCCCAGTCTACA-ATCGGATTGGACCGAGGGTTGCGGGAGCACATGCTAG
519 GCATACGGAGTTCATTCCTAGTCTA-AGATCGGACCGGACCGAGGGTTGCGGCAGCACATACTGG
* **
16095294 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGCCGGGGCACCATC---G--TCG---GAGAAC
583 GCTCGGGCATGTGCTGGTGCCTCATTTTTCTTCACCGGGGCACCATCGGAGCATCGTCAGAGAAC
* * ** * *
16095351 CTGATCGGAGGCATTGGGGTTCCGGA-GATCGGGGGTACCGGGGGGGTGTGCACACATGATGTGC
648 CTGACCGGAGGCATTGGGGTT-CTGACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGC
* * *
16095415 GATGGGAGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCTCGAGAACTCACA
712 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
* *
16095480 CCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
777 CCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
16095545 GGGGCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAACT
842 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
** * *
16095603 TTTTTGTGCATGCCAACAAAAATACAAGGATCATATCTACCAAGTTTGGGGCCAAAACTGCTTCT
1 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* ** *
16095668 GAAAAATTTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCCTGAAAAATAGAAAACGAGT
66 GAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
* *
16095733 CGTCTTGCCATGAAAGTTCACGTGAAGACTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAA
131 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * *
16095797 ATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAAACCACCTACCACCCTATCGATCCATGG
196 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * *
16095862 CTTGCACATCCCGTCTCTCTAGCTGGCGTAGTGGCCCGCTCGTCCGTCCGCCCACTCGTTTCGTC
261 CTTGCGCATCCCATCTCTCTGGCTGGCGTAGT-GCCCGCCCG-CCG-CCGCCCACTCGTTTCATC
* * * *
16095927 GGTTGGCTTAGACATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGGCAG
323 GATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGGCAG
* * * * *
16095992 TAGGATCGACAGCCCGCAAAGGGGGACCCGGCCGAACCCCGGCTTGCGCATCCCACCCCTCTGGT
388 CAGGATCGACAGCACGCAAAGGGGGACCCGGCCGATCCCCGGCTTACGCATCCCACCCCTCTGGC
* * *
16096057 CGGATGAGCGCCCGCACGCTCGTTTCGTGGGTTGACATAGGCATACAGAGTTCATTCCTAGTCTA
453 CGGATGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTA
* * * * *
16096122 AGCATACAGAGTTCATT-CTCAGTCTAGGATTGGACCGGACCGAGGGTTGTGGCA-CATATACTG
518 AGCATACGGAGTTCATTCCT-AGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATACTG
* *
16096185 GGCTCGGGCATGTGCTGGAGCCTCATTTTTCTTCACCGGGGCACCATCCTCGGAGCATCGCCAGA
582 GGCTCGGGCATGTGCTGGTGCCTCATTTTTCTTCACCGGGGCACCA---TCGGAGCATCGTCAGA
* * *
16096250 GAACCTGATCGGCGGTATTGGGGTTC-GACGATCGGGGGGGCC-AGGGGGTGTGCGCACATGATG
644 GAACCTGACCGGAGGCATTGGGGTTCTGACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATG
*
16096313 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAAAACTC
709 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* *
16096378 ACATCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
774 ACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
16096443 ATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATT
839 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * * *
16096504 TTTTTGTGCATGCCAA-AAAAAAAAAAAGATCACGTCTACCAGGTTTGGGGCCAAAACACCTTCC
1 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
** * *
16096568 GAAAAAATTTTAAAAAATCCCAAACCCCAAAAAGATTCCAAAATCGTGAAAAATAGAAAACGAGT
66 GAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
*
16096633 CGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
131 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * *
16096698 ATGGCATTGGCA-CCCGAAAATATGAAGATGTGCCTAAAGCCACCTACCACCCTATCGATCCACG
196 ATGGCATTGGCATGCAG-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * * * *
16096762 GCTTGCGCATCCCATCTCTCTCGCCGGCATAGTGCCAGCCCGCACGCCCGTCCGCTCGTTTAATC
260 GCTTGCGCATCCCATCTCTCTGGCTGGCGTAGTGCCCGCCCGC-CG-CCGCCCACTCGTTTCATC
* * * * * *
16096827 GATTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATC-GTTCTAGG-CCAAGGGTTGCGGT
323 GATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-AC-CGGACCAAGGGTTACGGC
** * * * * **
16096890 AGCAGGATC-AGCAGCATACAAAGGAGGACCTGGTCGATCCCCGACTTACGCATCCTGCCCCTCT
386 AGCAGGATCGA-CAGCACGCAAAGGGGGACCCGGCCGATCCCCGGCTTACGCATCCCACCCCTCT
* *
16096954 GGCC-GACTGAGCACCCGCATGCTCGTCTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAG
450 GGCCGGA-TGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAG
* * * * *
16097018 TCTAAGCATACGGAGTTTATTCCTAGTCTAAGATCGGACTGGACCAAGGGTTGCAGCAGCATATA
514 TCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATA
* * *
16097083 TTGGGCTCGGGCATGTACTGGTGCCGT-ATTTTTCTT---C---G-----TCGGAGCATCGTCGG
579 CTGGGCTCGGGCATGTGCTGGTGCC-TCATTTTTCTTCACCGGGGCACCATCGGAGCATCGTCAG
16097136 AGAACCTGACC-GATGGCATTGGGGTTCTGACGATC-GGGGGGCCGAGGGGGGTGTGCGCACATG
643 AGAACCTGACCGGA-GGCATTGGGGTTCTGACGATCGGGGGGGCCGA-GGGGGTGTGCGCACATG
* *
16097199 ATGTGCGATGCGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAA
706 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAA
* * *
16097264 CTCACACCCCCTTAAAAACCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTATCT
771 CTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * *
16097329 AAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTGTTAGTTGAATT
836 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* *
16097393 TTTTTGTGCATGCCAACAACAATACAAGGATCACGTCCACCA
1 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
16097435 TACGAAGTCA
Statistics
Matches: 2393, Mismatches: 286, Indels: 103
0.86 0.10 0.04
Matches are distributed among these distances:
886 1 0.00
887 43 0.02
888 8 0.00
889 214 0.09
890 43 0.02
891 247 0.10
892 241 0.10
893 241 0.10
894 8 0.00
895 19 0.01
898 5 0.00
899 5 0.00
900 384 0.16
901 345 0.14
902 13 0.01
903 197 0.08
904 222 0.09
905 52 0.02
906 105 0.04
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
GAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
CTTGCGCATCCCATCTCTCTGGCTGGCGTAGTGCCCGCCCGCCGCCGCCCACTCGTTTCATCGAT
TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGGCAGCAG
GATCGACAGCACGCAAAGGGGGACCCGGCCGATCCCCGGCTTACGCATCCCACCCCTCTGGCCGG
ATGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGC
ATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATACTGGGCT
CGGGCATGTGCTGGTGCCTCATTTTTCTTCACCGGGGCACCATCGGAGCATCGTCAGAGAACCTG
ACCGGAGGCATTGGGGTTCTGACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATG
GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCC
CTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
Found at i:16097026 original size:26 final size:26
Alignment explanation
Indices: 16096997--16097049 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16096987 GTTGACTTAG
16096997 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* * *
16097023 GCATACGGAGTTTATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16097049 G
1 G
16097050 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16098285 original size:26 final size:26
Alignment explanation
Indices: 16098255--16098307 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16098245 GTTGACTTAG
16098255 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16098281 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16098307 G
1 G
16098308 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16099202 original size:26 final size:26
Alignment explanation
Indices: 16099166--16099218 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16099156 ATTGACTTAG
16099166 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16099192 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16099218 G
1 G
16099219 ATCAGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16100085 original size:26 final size:26
Alignment explanation
Indices: 16100055--16100107 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
16100045 GTTGACTTAG
16100055 GCATACAGAATTCATTCCCAA-TCTAA
1 GCATACAGAATTCATT-CCAAGTCTAA
** *
16100081 GCATATGGAGTTCATTCCAAGTCTAA
1 GCATACAGAATTCATTCCAAGTCTAA
16100107 G
1 G
16100108 ATCAGATCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 4 0.17
26 19 0.83
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAATTCATTCCAAGTCTAA
Found at i:16100251 original size:901 final size:898
Alignment explanation
Indices: 16098056--16103656 Score: 7238
Period size: 902 Copynumber: 6.3 Consensus size: 898
16098046 ATATGAAGAT
* * *
16098056 GTGCCCGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAATCT
1 GTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * *
16098121 AAGATCAGACCGAACCGAGGGTTGCGGCAGCAGGATCGACAGCACACAGAGAGGGACCCGGCCGA
66 AAGATCAGACCAAACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGAGGGACCCGACCGA
** * *
16098186 TCCCTAGCTTACGCATCCC-CCTCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGA
131 TCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGA
* *
16098250 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCTTTCCCAGTCTAAGATCGGAT
196 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAT
** * ** * * *** *
16098315 TGGATCGAGGGTTGTGGCAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCATTTTTTTGTTCGT
261 CAGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
* * * * * *
16098380 CGGGGCACCATCATCGGAGCATCGCCGGAGAACCTGATCAACGACATTGGGGTTTCGACGATCGG
326 CGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGG
* * ** *
16098445 GGGGACGGGGGGGTGTGCGCACATGGTGCCCGATGGGTGCTGGTACTTGGCCCTTATATTGTCCC
391 GGGG-CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* *
16098510 CCTATCACTCACCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
455 CCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* *
16098575 GCTGCCAGTAGCCATTAAAATGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGT
520 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * *
16098640 ACACTTCAAGTTTTTAGTTGAATTTTTTTGTGCAAGCTAACAAAAATACAAGGATCACGTCTACC
585 ACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
** * * * *
16098705 AAGTTTGATGCCAAAATTCCTTCC-AGAAATATTTTAAAAAATCTCGATCCGTAAAAAGTTTCAA
650 AAGTTTGGGGCCAAAACTCCTTCCGA-AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAA
* * *
16098769 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTCCAGGTGAAGGCTTAAGGGTCCA
714 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
** * * *
16098834 TTGTATGAATTTACAAGAAAT-AAAATGGCATTGGCATGTAGAACTATGAAGATGTGCCTAAACC
779 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACC
* **
16098898 CACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCTGGCGTGGTAA
844 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC---CGACGT-A
* * * *
16098957 CTGCCCGCCCGCCCGTCCGCCCATCCGCTCATTTCGTTGGTTGGCTTAGGCATACAGAGTTCATT
1 GTGCCCGCCCG--C--CCG--C--CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * *
16099022 CCCAGTCTAAGATCAGACCAAACCAAGGGTTGCGGCAGCAGGATCGGTAGCATGCAGAGGGGGAC
58 CCCAGTCTAAGATCAGACCAAACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGAGGGAC
* * * ** *
16099087 CCGGCCGATCCTCGGCTTGCGCATCTCGCCCCCTCTGGCCAACTGAGCGCCCACACGCTCGTTTC
123 CCGACCGATCCCCGGCTTGCGCATCCCG-CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
* *
16099152 GTGGATTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
187 ATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * * * *
16099217 AGATCAGATCGGACCGAGGGTTACGGCAGCATATACTAGGCTCGGGCATGTGCTGGTGCCGCATT
252 AGATCAGATCAGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
* *
16099282 TTTCTTCGTCGGGGCACCATCGTCGGAG-A--ACC--TG-A-CTG---G-CGTCATTGGGGTTCC
317 TTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCC
* *
16099336 GACGATCTGGGGGCCGAGGGGGGTGTGCGCACATGATGTGCGATGCGTGCTGGTACTTGGCCCTT
382 GACGATCGGGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* *
16099401 ATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAAAGCATTTGAGATT
445 ATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* * *
16099466 TTACAGGTTTGCTGCCAATAGCCATTAAAGTATCTAAAATGGGGACACTTTTTTCAAATGGTCAC
510 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* * *
16099531 AAAATCTTGTACACTTCGAGTTTGTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGAT
575 AAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
* * * *
16099596 CACATCTACCAAGTTTGGGGCCAAACCTCCATCCGAAAAAATTTTAAAAAATCCCTAACCGTAAA
640 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAA
*
16099661 AAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
705 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
16099726 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGT
770 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGT
* *
16099791 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCTCGTCTCTCTGGCCGACGTA
835 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA
* * *
16099855 GTGCCCGCCCGACCACCCGCTCGTTTCGTCGGTTGGCTTACGCATACGGAGTTCATTCCCAGTCT
1 GTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * * * * *
16099920 AAGACCGGGCCAAACCAAGGGTTGTGGTAGCAGGATCGGTAGCACGCAGAGACGGACTCGACCGA
66 AAGATCAGACCAAACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGAGGGACCCGACCGA
* * * * *
16099985 TCCCCGGCTCGTGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGTATGCTCGTTTCATGGGTTGA
131 TCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGA
* * * * *
16100050 CTTAGGCATACAGAATTCATTCCCAATCTAAGCATATGGAGTTCATTCCAAGTCTAAGATCAGAT
196 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAT
* * * * * **
16100115 CAGACCGAGGGTTGCGACAGCACATGTTGGGCTTGGGCATATGCTGGTGCCGTATTTTTCTTCAC
261 CAGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
* * * *
16100180 CGGGGCACCATCGTCGGAGCATTATCGGAGAACCTGACCGACGGCATTAGGGTTCCGGCGATCGG
326 CGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-G
*
16100245 GGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
390 GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* * *
16100310 CCTATCCCTCATTAAACCTCAAGAACTCACACCCCCTTAAAGAGCAATTGAGATTTTATAGGTTT
455 CCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
*
16100375 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAGTTTTTTCAAATGGTCACAAAATCTTGT
520 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
** * * * * * *
16100440 ACACTTCGGGTTTTTAGATAAATGTTTTTGTGCATGCTAAAAAAAATACAAGGATCACGTTTACC
585 ACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * * * *
16100505 AAGTTTAGGGCCAAAACACCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAATTTTCAAA
650 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAA
* *
16100570 AATCCTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACTTGAAGGCTTAAGGGACCAT
715 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* * *
16100635 TGTATGAATTTACAAGCCGTAAAAATGGCATTGGCATGCAAAAATATGAAGATATGCCCAAACCC
780 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCC
* **
16100700 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTCGCCGGTGTA
845 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA
* *
16100754 GTGCCCGTCCGCCCGGCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCA
1 GTG--C--CCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * * * * * * * *
16100819 GTATAAGATTAGACCAGATCAAGGGTTGCGACAACAGAATCGACAACACGCAGATG-GGGACCCG
62 GTCTAAGATCAGACCAAACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGA-GAGGGACCCG
* * * * **
16100883 ATCGATCCCCGGCTTGCGCATTCCGCCCCTCTGGCCAGTTGAGCGCCCGCACGCTCGTTTTGTGG
126 ACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGG
* * * * * *
16100948 GTTGACTTAGGCATACGAAGTTCATTCCTAGTCTAAGCATACAGAGTTCATTCTCAGTGTAATAT
191 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * *
16101013 CGGA-CTGGACTGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTC
256 CAGATC-AGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
* * * *
16101077 CTTCGTCGGGGCACCATCGCCAGAGCATCCCCGGAGAACCTGACCGACGGCATTGGGGTTCCGAT
320 CTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGAC
* *
16101142 GATCGGGGGGGCGAAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
385 GATCGGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* * *
16101207 TGGCCCCCTATCCCTCATCAAACCTCGAGAGCTCACA-CCCCTTAAAGAGCATTTGATATTTTAC
449 TGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* * *
16101271 AGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAATTGGGGACACTTTTTGCAAATGGTCACAAAA
514 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
*
16101336 TCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACG
579 TCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
*** * * *
16101401 TCTACCAAGTTTAATGCTAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGT
644 TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGT
* * *
16101466 TTCAAAAATCAGGAAAAATAAAAAAGGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
709 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
16101531 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCT
774 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCT
*
16101596 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTA
839 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA
* * *
16101656 GTGCCCGCCTGCCCGCCCGCTCGTTTCATCTGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
1 GTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* *** * * *
16101721 AAGATCAAACTGGACCGAGCGTTACGGCAGC---A----CA-CA-G-AG-GA-GGACCCGACCGA
66 AAGATCAGACCAAACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGAGGGACCCGACCGA
** * * * * *
16101774 TCCCTAGCTTGCGCATCCCGCCCCTCTGGTCGGCTGGGCGCTCGCAAGCTCTTTTCATGGGTTGA
131 TCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGA
** *
16101839 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGAC
196 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAT
* * * * ** * *
16101904 CATA-CTAGGGGTTACGACAACACATGCTAGGCTCTAGCATGTGCTGCTACCGCATTTTTCTTCG
261 CAGACCGA-GGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG
* * *
16101968 TCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTTCAACAATC-
325 TCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCG
* *
16102032 GGGGGTCGGGGGGTGTGCGCACATGATGTGCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCC
390 GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* * * *
16102097 CCTATTCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGACCATTTGAGATTTTACTGGTTT
455 CCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* *
16102162 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGCTCCCAAAATCTTGT
520 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * *
16102227 ACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCGTGCCAAAAAAAAATAAAAGGATCACGTCTAC
585 ACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AACAAAAATACAAGGATCACGTCTAC
16102292 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAA
649 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAA
* *
16102357 AAATC--G-----T-G--AA--A-TCATCTTGCCATGAAACTTCACGTGAAGGCTTGAGGGACCA
714 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* *** *
16102409 TTGTTTGAATTTACAAGCCATAAAAATGGCATTGGTGCGCAGAAATATGAAGATGTGCCTAAACC
779 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACC
* * * * * *
16102474 CACCTACCACCCTATCAATTCACGGCTTGCGCATCCCGTCCCTTTGGCTGGCGTA
844 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA
* * *
16102529 GT----GCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAATTCATTCCCTGTCT
1 GTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* ** ** ** * * ** * * *
16102590 AAGATCAAACTGAACGGAGGGTTGTAGTAGCAAGATCTACAGCATGCAGAGGGGGACTC-AGCCG
66 AAGATCAGACCAAACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGAGGGACCCGA-CCG
* * * *
16102654 ATCCCCGGCTTGCCCATCCCGCCCCTCT-GCCTGGCTGAGCGCCCGTACGCTCGTTTCGTGTGTT
130 ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC-GGCTGAGCGCCCGCACGCTCGTTTCATGGGTT
* * * * *
16102718 GACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTTCCAATCTAAAATCAA
194 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * *
16102783 ACCAGACCGAGGGTTGCGACAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
259 ATCAGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
* * * * * *
16102848 GTCGGGGCACCATCGTCGAAGTATCGCCTGAGAACCTGACCGACAGCATTGGGGTTCCGA-TATC
324 GTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC
* * * ** **
16102912 GGGGGGTCGGGGGGTGTGCACACATGATGTGGGATGGCAGCTGGTACTTGTTCCTTATATTGGCC
389 GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* * * *
16102977 CCCTTTCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGGGAATTTGAGATTTTACAGGTT
454 CCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
*
16103042 TGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
519 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* *
16103107 TTCACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA-
584 TACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
* * ** * **
16103171 AAATGTTT-GGGCCTAAAACTCGTTTTGAAAAAATTTTTAAAAATCAAGAACCGTAAAAAGTTTC
649 CAA-GTTTGGGGCC-AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTC
* * *
16103235 TAAAATCGTGAAAAATAGAAAACGA---GTCATGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
712 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* *
16103297 CATTGTATGAATTTACAAGACTTAAAAATGGCATTGGC--GCACAGAAATATGAAGATGTGCCTA
777 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA-A-AAATATGAAGATGTGCCTA
* *
16103360 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGTCGACGTA
840 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA
*
16103419 GTGCCCGCCCGCCCGTTCGCCCGTCCGCCTACTCGTTTCGTCGGTTAGCTTAGGCATA-GGAGTT
1 GTGCCCGCCCG-CC---CG--C--CCG----CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* ** * * * * * * *
16103483 CATTCCTAGTCTAAGATTGGATCAGACCGAGGGTTGCGGTAGCAGGATCAGCAGCAAGCAGAGGG
54 CATTCCCAGTCTAAGATCAGACCAAACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGAG
* * * * * * *
16103548 GGA-CCTAGCCCATCCCCGGCTTGCACATCTCGCCCCTCTGGCCGGCTAAGTGCCCGCAAC-CTT
119 GGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC-ACGCTC
* *
16103611 ATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG
182 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
16103657 ATCAGACCAG
Statistics
Matches: 4103, Mismatches: 508, Indels: 174
0.86 0.11 0.04
Matches are distributed among these distances:
869 77 0.02
872 1 0.00
873 149 0.04
874 1 0.00
876 4 0.00
877 2 0.00
878 1 0.00
879 10 0.00
880 84 0.02
881 435 0.11
882 3 0.00
884 85 0.02
885 134 0.03
886 316 0.08
887 2 0.00
888 6 0.00
889 171 0.04
890 260 0.06
891 2 0.00
892 4 0.00
894 7 0.00
895 4 0.00
896 3 0.00
898 89 0.02
899 471 0.11
900 46 0.01
901 383 0.09
902 477 0.12
903 402 0.10
904 5 0.00
905 145 0.04
906 32 0.01
907 1 0.00
908 2 0.00
909 115 0.03
910 1 0.00
911 173 0.04
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (898 bp):
GTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
AAGATCAGACCAAACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGAGGGACCCGACCGA
TCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGA
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAT
CAGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
CGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGG
GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
CTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
CACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAA
ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCA
CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA
Found at i:16100471 original size:899 final size:898
Alignment explanation
Indices: 16098056--16103656 Score: 7220
Period size: 899 Copynumber: 6.3 Consensus size: 898
16098046 ATATGAAGAT
* * *
16098056 GTGCCCGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAATCT
1 GTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * *
16098121 AAGATCAGACCGAACCGAGGGTTGCGGCAGCAGGATCGACAGCACACAGAGAGGGACCCGGCCGA
66 AAGATCAGACCAAACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGAGGGACCCGACCGA
** * *
16098186 TCCCTAGCTTACGCATCCC-CCTCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGA
131 TCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGA
* *
16098250 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCTTTCCCAGTCTAAGATCGGAT
196 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAT
** * ** * * *** *
16098315 TGGATCGAGGGTTGTGGCAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCATTTTTTTGTTCGT
261 CAGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
* * * * * *
16098380 CGGGGCACCATCATCGGAGCATCGCCGGAGAACCTGATCAACGACATTGGGGTTTCGACGATCGG
326 CGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGG
** * ** *
16098445 GGGGACGGGGGGGTGTGCGCACATGGTGCCCGATGGGTGCTGGTACTTGGCCCTTATATTGTCCC
391 GGGG-CCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* *
16098510 CCTATCACTCACCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
455 CCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* *
16098575 GCTGCCAGTAGCCATTAAAATGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGT
520 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * *
16098640 ACACTTCAAGTTTTTAGTTGAATTTTTTTGTGCAAGCTAACAAAAATACAAGGATCACGTCTACC
585 ACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
** * * * *
16098705 AAGTTTGATGCCAAAATTCCTTCC-AGAAATATTTTAAAAAATCTCGATCCGTAAAAAGTTTCAA
650 AAGTTTGGGGCCAAAACTCCTTCCGA-AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAA
* * *
16098769 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTCCAGGTGAAGGCTTAAGGGTCCA
714 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
** * * *
16098834 TTGTATGAATTTACAAGAAAT-AAAATGGCATTGGCATGTAGAACTATGAAGATGTGCCTAAACC
779 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACC
* **
16098898 CACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCTGGCGTGGTAA
844 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC---CGACGT-A
* * * *
16098957 CTGCCCGCCCGCCCGTCCGCCCATCCGCTCATTTCGTTGGTTGGCTTAGGCATACAGAGTTCATT
1 GTGCCCGCCCG--C--CCG--C--CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * *
16099022 CCCAGTCTAAGATCAGACCAAACCAAGGGTTGCGGCAGCAGGATCGGTAGCATGCAGAGGGGGAC
58 CCCAGTCTAAGATCAGACCAAACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGAGGGAC
* * * ** *
16099087 CCGGCCGATCCTCGGCTTGCGCATCTCGCCCCCTCTGGCCAACTGAGCGCCCACACGCTCGTTTC
123 CCGACCGATCCCCGGCTTGCGCATCCCG-CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
* *
16099152 GTGGATTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
187 ATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * * * *
16099217 AGATCAGATCGGACCGAGGGTTACGGCAGCATATACTAGGCTCGGGCATGTGCTGGTGCCGCATT
252 AGATCAGATCAGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
* *
16099282 TTTCTTCGTCGGGGCACCATCGTCGGAG-A--ACC--TG-A-CTG---G-CGTCATTGGGGTTCC
317 TTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCC
* *
16099336 GACGATCTGGGGGCCGAGGGGGGTGTGCGCACATGATGTGCGATGCGTGCTGGTACTTGGCCCTT
382 GACGATCGGGGGGCC-A-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* *
16099401 ATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAAAGCATTTGAGATT
445 ATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* * *
16099466 TTACAGGTTTGCTGCCAATAGCCATTAAAGTATCTAAAATGGGGACACTTTTTTCAAATGGTCAC
510 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* * *
16099531 AAAATCTTGTACACTTCGAGTTTGTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGAT
575 AAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
* * * *
16099596 CACATCTACCAAGTTTGGGGCCAAACCTCCATCCGAAAAAATTTTAAAAAATCCCTAACCGTAAA
640 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAA
*
16099661 AAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
705 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
16099726 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGT
770 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGT
* *
16099791 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCTCGTCTCTCTGGCCGACGTA
835 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA
* * *
16099855 GTGCCCGCCCGACCACCCGCTCGTTTCGTCGGTTGGCTTACGCATACGGAGTTCATTCCCAGTCT
1 GTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * * * * *
16099920 AAGACCGGGCCAAACCAAGGGTTGTGGTAGCAGGATCGGTAGCACGCAGAGACGGACTCGACCGA
66 AAGATCAGACCAAACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGAGGGACCCGACCGA
* * * * *
16099985 TCCCCGGCTCGTGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGTATGCTCGTTTCATGGGTTGA
131 TCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGA
* * * * *
16100050 CTTAGGCATACAGAATTCATTCCCAATCTAAGCATATGGAGTTCATTCCAAGTCTAAGATCAGAT
196 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAT
* * * * * **
16100115 CAGACCGAGGGTTGCGACAGCACATGTTGGGCTTGGGCATATGCTGGTGCCGTATTTTTCTTCAC
261 CAGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
* * * *
16100180 CGGGGCACCATCGTCGGAGCATTATCGGAGAACCTGACCGACGGCATTAGGGTTCCGGCGATCGG
326 CGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-G
16100245 GGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
390 GGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* * *
16100310 CCTATCCCTCATTAAACCTCAAGAACTCACACCCCCTTAAAGAGCAATTGAGATTTTATAGGTTT
455 CCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
*
16100375 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAGTTTTTTCAAATGGTCACAAAATCTTGT
520 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
** * * * * * *
16100440 ACACTTCGGGTTTTTAGATAAATGTTTTTGTGCATGCTAAAAAAAATACAAGGATCACGTTTACC
585 ACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * * * *
16100505 AAGTTTAGGGCCAAAACACCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAATTTTCAAA
650 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAA
* *
16100570 AATCCTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACTTGAAGGCTTAAGGGACCAT
715 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* * *
16100635 TGTATGAATTTACAAGCCGTAAAAATGGCATTGGCATGCAAAAATATGAAGATATGCCCAAACCC
780 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCC
* **
16100700 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTCGCCGGTGTA
845 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA
* *
16100754 GTGCCCGTCCGCCCGGCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCA
1 GTG--C--CCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * * * * * * * *
16100819 GTATAAGATTAGACCAGATCAAGGGTTGCGACAACAGAATCGACAACACGCAGATG-GGGACCCG
62 GTCTAAGATCAGACCAAACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGA-GAGGGACCCG
* * * * **
16100883 ATCGATCCCCGGCTTGCGCATTCCGCCCCTCTGGCCAGTTGAGCGCCCGCACGCTCGTTTTGTGG
126 ACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGG
* * * * * *
16100948 GTTGACTTAGGCATACGAAGTTCATTCCTAGTCTAAGCATACAGAGTTCATTCTCAGTGTAATAT
191 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * *
16101013 CGGA-CTGGACTGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTC
256 CAGATC-AGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
* * * *
16101077 CTTCGTCGGGGCACCATCGCCAGAGCATCCCCGGAGAACCTGACCGACGGCATTGGGGTTCCGAT
320 CTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGAC
* *
16101142 GATCGGGGGGGCGAAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
385 GATC-GGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* * *
16101207 TGGCCCCCTATCCCTCATCAAACCTCGAGAGCTCACA-CCCCTTAAAGAGCATTTGATATTTTAC
449 TGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* * *
16101271 AGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAATTGGGGACACTTTTTGCAAATGGTCACAAAA
514 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
*
16101336 TCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACG
579 TCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
*** * * *
16101401 TCTACCAAGTTTAATGCTAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGT
644 TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGT
* * *
16101466 TTCAAAAATCAGGAAAAATAAAAAAGGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
709 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
16101531 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCT
774 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCT
*
16101596 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTA
839 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA
* * *
16101656 GTGCCCGCCTGCCCGCCCGCTCGTTTCATCTGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
1 GTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* *** * * *
16101721 AAGATCAAACTGGACCGAGCGTTACGGCAGC---A----CA-CA-G-AG-GA-GGACCCGACCGA
66 AAGATCAGACCAAACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGAGGGACCCGACCGA
** * * * * *
16101774 TCCCTAGCTTGCGCATCCCGCCCCTCTGGTCGGCTGGGCGCTCGCAAGCTCTTTTCATGGGTTGA
131 TCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGA
** *
16101839 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGAC
196 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAT
* * * * ** * *
16101904 CATA-CTAGGGGTTACGACAACACATGCTAGGCTCTAGCATGTGCTGCTACCGCATTTTTCTTCG
261 CAGACCGA-GGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG
* * *
16101968 TCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTTCAACAATC-
325 TCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCG
* * *
16102032 GGGGGTCGGGGGGTGTGCGCACATGATGTGCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCC
390 GGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* * * *
16102097 CCTATTCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGACCATTTGAGATTTTACTGGTTT
455 CCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* *
16102162 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGCTCCCAAAATCTTGT
520 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * *
16102227 ACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCGTGCCAAAAAAAAATAAAAGGATCACGTCTAC
585 ACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AACAAAAATACAAGGATCACGTCTAC
16102292 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAA
649 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAA
* *
16102357 AAATC--G-----T-G--AA--A-TCATCTTGCCATGAAACTTCACGTGAAGGCTTGAGGGACCA
714 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* *** *
16102409 TTGTTTGAATTTACAAGCCATAAAAATGGCATTGGTGCGCAGAAATATGAAGATGTGCCTAAACC
779 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACC
* * * * * *
16102474 CACCTACCACCCTATCAATTCACGGCTTGCGCATCCCGTCCCTTTGGCTGGCGTA
844 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA
* * *
16102529 GT----GCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAATTCATTCCCTGTCT
1 GTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* ** ** ** * * ** * * *
16102590 AAGATCAAACTGAACGGAGGGTTGTAGTAGCAAGATCTACAGCATGCAGAGGGGGACTC-AGCCG
66 AAGATCAGACCAAACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGAGGGACCCGA-CCG
* * * *
16102654 ATCCCCGGCTTGCCCATCCCGCCCCTCT-GCCTGGCTGAGCGCCCGTACGCTCGTTTCGTGTGTT
130 ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC-GGCTGAGCGCCCGCACGCTCGTTTCATGGGTT
* * * * *
16102718 GACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTTCCAATCTAAAATCAA
194 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * *
16102783 ACCAGACCGAGGGTTGCGACAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
259 ATCAGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
* * * * * *
16102848 GTCGGGGCACCATCGTCGAAGTATCGCCTGAGAACCTGACCGACAGCATTGGGGTTCCGA-TATC
324 GTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC
* * * * ** **
16102912 GGGGGGTCGGGGGGTGTGCACACATGATGTGGGATGGCAGCTGGTACTTGTTCCTTATATTGGCC
389 GGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* * * *
16102977 CCCTTTCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGGGAATTTGAGATTTTACAGGTT
454 CCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
*
16103042 TGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
519 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* *
16103107 TTCACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA-
584 TACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
* * ** * **
16103171 AAATGTTT-GGGCCTAAAACTCGTTTTGAAAAAATTTTTAAAAATCAAGAACCGTAAAAAGTTTC
649 CAA-GTTTGGGGCC-AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTC
* * *
16103235 TAAAATCGTGAAAAATAGAAAACGA---GTCATGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
712 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* *
16103297 CATTGTATGAATTTACAAGACTTAAAAATGGCATTGGC--GCACAGAAATATGAAGATGTGCCTA
777 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA-A-AAATATGAAGATGTGCCTA
* *
16103360 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGTCGACGTA
840 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA
*
16103419 GTGCCCGCCCGCCCGTTCGCCCGTCCGCCTACTCGTTTCGTCGGTTAGCTTAGGCATA-GGAGTT
1 GTGCCCGCCCG-CC---CG--C--CCG----CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* ** * * * * * * *
16103483 CATTCCTAGTCTAAGATTGGATCAGACCGAGGGTTGCGGTAGCAGGATCAGCAGCAAGCAGAGGG
54 CATTCCCAGTCTAAGATCAGACCAAACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGAG
* * * * * * *
16103548 GGA-CCTAGCCCATCCCCGGCTTGCACATCTCGCCCCTCTGGCCGGCTAAGTGCCCGCAAC-CTT
119 GGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC-ACGCTC
* *
16103611 ATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG
182 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
16103657 ATCAGACCAG
Statistics
Matches: 4103, Mismatches: 509, Indels: 172
0.86 0.11 0.04
Matches are distributed among these distances:
869 77 0.02
872 1 0.00
873 149 0.04
874 1 0.00
876 4 0.00
877 2 0.00
878 1 0.00
879 10 0.00
880 84 0.02
881 435 0.11
882 3 0.00
884 90 0.02
885 127 0.03
886 316 0.08
887 2 0.00
888 6 0.00
889 171 0.04
890 260 0.06
891 2 0.00
892 4 0.00
894 7 0.00
895 4 0.00
896 3 0.00
898 89 0.02
899 471 0.11
900 47 0.01
901 382 0.09
902 470 0.11
903 411 0.10
904 5 0.00
905 145 0.04
906 32 0.01
907 1 0.00
908 2 0.00
909 115 0.03
910 1 0.00
911 173 0.04
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (898 bp):
GTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
AAGATCAGACCAAACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGAGGGACCCGACCGA
TCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGA
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAT
CAGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
CGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGG
GGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
CTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
CACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAA
ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCA
CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA
Found at i:16101874 original size:26 final size:26
Alignment explanation
Indices: 16101844--16101896 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16101834 GTTGACTTAG
16101844 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16101870 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16101896 G
1 G
16101897 ATTGGACCAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16102761 original size:26 final size:26
Alignment explanation
Indices: 16102725--16102776 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16102715 GTTGACTTAG
* *
16102725 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
16102751 GCATACGGAGTTCATTTCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
16102777 AATCAAACCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:16103864 original size:26 final size:26
Alignment explanation
Indices: 16103828--16103906 Score: 113
Period size: 26 Copynumber: 3.0 Consensus size: 26
16103818 GTTGACTTAG
*
16103828 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16103854 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* ** *
16103880 GAATACAAAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16103906 G
1 G
16103907 ATCATACCGA
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16105668 original size:26 final size:26
Alignment explanation
Indices: 16105620--16105698 Score: 97
Period size: 26 Copynumber: 3.0 Consensus size: 26
16105610 GTTGACTTAG
* **
16105620 GCATATGGAGTTCATTCGTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16105646 GCATACGGAGTTCATACCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16105672 GAATAC-GAGGTTCATTCCCAGTCTAA
1 GCATACGGA-GTTCATTCCCAGTCTAA
16105698 G
1 G
16105699 ATTGGACTGG
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
25 2 0.04
26 44 0.96
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16106330 original size:26 final size:26
Alignment explanation
Indices: 16106301--16106354 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
16106291 TCGTGGGTTT
*
16106301 AGCATACGGAGTTCATTCCTAGTCTA
1 AGCATACGGAGTTCATTCCCAGTCTA
16106327 AGCATACGGAGTTCATTCCCAGTCTA
1 AGCATACGGAGTTCATTCCCAGTCTA
16106353 AG
1 AG
16106355 ATCGGATCAG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (26 bp):
AGCATACGGAGTTCATTCCCAGTCTA
Found at i:16107254 original size:26 final size:26
Alignment explanation
Indices: 16107204--16107264 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 26
16107194 GTTGACTTAG
16107204 GCATACGG-TGTTCATTCCCAGTCTAA
1 GCATACGGAT-TTCATTCCCAGTCTAA
**
16107230 GCATACGGATTTCATTCCCCTTCTAA
1 GCATACGGATTTCATTCCCAGTCTAA
16107256 G-AT-CGGATT
1 GCATACGGATT
16107265 GGACCGAGGG
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
24 6 0.19
25 2 0.06
26 23 0.72
27 1 0.03
ACGTcount: A:0.23, C:0.26, G:0.18, T:0.33
Consensus pattern (26 bp):
GCATACGGATTTCATTCCCAGTCTAA
Found at i:16108207 original size:26 final size:26
Alignment explanation
Indices: 16108171--16108220 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
16108161 GGATTAGGCA
16108171 TACGGAGTTCATTCCCAGTCTAAGTG
1 TACGGAGTTCATTCCCAGTCTAAGTG
* *
16108197 TACGGATTTCATTCCCATTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
16108221 ATCGGACCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.24, G:0.18, T:0.34
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGTG
Found at i:16109133 original size:26 final size:26
Alignment explanation
Indices: 16109081--16109133 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16109071 GATGGCTTAG
*
16109081 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCATTCCCAATATAA
*
16109107 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATATAA
16109133 G
1 G
16109134 ATCAGACCGT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATATAA
Found at i:16109969 original size:26 final size:26
Alignment explanation
Indices: 16109940--16110018 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
16109930 GTTGATATAG
16109940 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16109966 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
16109992 GCATACGGAGTTCATGCCCAATCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16110018 G
1 G
16110019 ATCGGACCGG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16111749 original size:26 final size:26
Alignment explanation
Indices: 16111713--16111765 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16111703 GTTGACTTAG
*
16111713 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16111739 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16111765 G
1 G
16111766 ATTGGATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16114310 original size:903 final size:890
Alignment explanation
Indices: 16112376--16114600 Score: 3228
Period size: 903 Copynumber: 2.5 Consensus size: 890
16112366 TCATTTCATG
* *
16112376 GTTCATTCCCAGTCG-AAGATCGG-ATCGGACTGAGGGTTGCGGTAGCACATGCT-GGCTTCGGG
1 GTTCATTCCCAGT-GTAAGATCGGAAT-GGACTGAGGGTTGC-GCAGCACATGCTGGGC-TCAGG
* *
16112438 CATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCACCGGAGCATCGCCGGAGAACCTGA
62 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGCCGGAGAACCTGA
* * * *
16112503 CCGACGGCATTGGGGTTTCGACGATCAAGGGGGCCGGGGGGTGTCCGCACATGATGTGCGATGGG
127 CCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
* * *
16112568 TGCTGGTACTTGGCCCTTATATTGGCGCCCTATCCCTAATCAAACCTGGAGAACTCACACCCCCT
192 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * *
16112633 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTCAAGTGTC-AGAAGTGGGGAC
257 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTA-AAATGGGGAC
16112697 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
321 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * * *
16112762 CCAAAAAAAATACAAGGATCACGTGTACCAAGATTGGGACCAATATCCCCTTGAAAAATTTTTAA
386 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAA-AACCCCTTAAAAAAATTTTAA
* * * *
16112827 AAAATCCCGAACTGGATAAGTTTCGAAAATCGTGAAAAATAGAAAATGAGTCGTCCTGCCATGAA
450 AAAATCCCGAACTGAAAAAGTTTCAAAAATCGTAAAAAATAGAAAATGAGTCGTCCTGCCATGAA
* * * * *
16112892 CTTCACGTGAAGGCTTAAGGGACCTTCGTATGAATTTACAAGCCATAAAAATGGCATAGGCATGT
515 CTTCACGGGAAGGCTTAAGGGACCTTCGTAAGAATTTACAAGCCATAAAAAAGACATAGGCAGGT
* * *
16112957 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACCGCTTGCGCATCCCATC
580 AGAAATATGAAGATGTACCTAAACCCACCGACCACCCTATCAATCCACCGCTCGCGCATCCCATC
* * * * *
16113022 TCTCTGGCTGGCGTAGTGCCCGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
645 TCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGACTTC
* * * * *
16113087 ATTCCCAGTCTAAGATCAAATCAAACTGAGGGTTGCGGTAGTAGGATCAGCAGTACGTAGAGGGG
710 ATTCCCAGTCTAAGATCAAACCAAACTGAGGGTTGCGGCAGCAGGATCAGCAGCACGCAGAGGGG
* *
16113152 GACCCGACTGTTCCCTCGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCACCCAGACGCTCGTT
775 GACCCGACTGATCCCTCGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCACCCAGACGCTCATT
* *
16113217 TCGTGGGCTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCGTACAGA
840 TCGTGGGCTAACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAGA
* * * * * *
16113268 GTTCATTCACAGTCTAAGATCAGATTGGATTGAGGGTTGCGACAACACATGCTGGGCTCAGGCAT
1 GTTCATTCCCAGTGTAAGATCGGAATGGACTGAGGGTTGCG-CAGCACATGCTGGGCTCAGGCAT
* *
16113333 GTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGACCG
65 GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGCCGGAGAACCTGACCG
* *
16113398 GCAGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
130 GCGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
*
16113463 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAA
195 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * *
16113528 AAAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTATCTAAAATGGGGACACTT
260 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTT
* * **
16113593 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTGTTAGTTGAATTTTTTTGTGCATGTGAA
325 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* *
16113658 AAAAAATACAAGGATCACGTCTACCAAGTTTAGGACCAAAACTCCTTCCAAAAAAATTTTAAAAA
390 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACCCCTT--AAAAAAATTTTAAAAA
*
16113723 ATCCCGAACCAT-AAAAAGTTTCAAAAATCGTAAAAAATAGAAAATGAGTCGTCTTGCCATGAAA
453 ATCCCGAA-C-TGAAAAAGTTTCAAAAATCGTAAAAAATAGAAAATGAGTCGTCCTGCCATG-AA
* * *
16113787 CTTCACGGGAAGTCTTAAGGGACCATT-GTAAGAATTTACAAGCCATAAAAAAGACATTGGGAGG
515 CTTCACGGGAAGGCTTAAGGGACC-TTCGTAAGAATTTACAAGCCATAAAAAAGACATAGGCAGG
* * *
16113851 TAGAAATATGAAGATGTACCTAAACCCACCGACCACCCTATCGATCCACGGCTCGCGCATCCCGT
579 TAGAAATATGAAGATGTACCTAAACCCACCGACCACCCTATCAATCCACCGCTCGCGCATCCCAT
16113916 CTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCAT
644 CTCTCTGGCCGACGTAGT----G----CCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCAT
* * * **
16113981 ATGTACTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGAT-AGGCAGCA
701 ACGGACTTCATTCCCAGTCTAAGATCAAACCAAACTGAGGGTTGCGGCAGCAGGATCA-GCAGCA
**
16114045 CGCAGAGGGGGACCCGACTGATCCC-CGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGTGCCC
765 CGCAGAGGGGGACCCGACTGATCCCTC-GCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCACCC
* * * **
16114109 -GTACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTTTAAGCATATGGA
829 AG-ACGCTCATTTCGTGGGCTAACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAGA
* * *
16114171 GTTCATTCCCAATGTAAGATCGGAATGGACCGAGGGTTGCAGCAGCACATGCTGGGCTAAGGCAT
1 GTTCATTCCCAGTGTAAGATCGGAATGGACTGAGGGTTGC-GCAGCACATGCTGGGCTCAGGCAT
* * * * * * *
16114236 GTGCTGGTGCCGCATTTTTCTTCATCGGGGCACTATCATCGGAGGATCACCAGAAAACCTGACTG
65 GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGCCGGAGAACCTGACCG
* * *
16114301 GCGGCATTGGGGTTCCGACGATCGTGGGGGCCGAGGGGTGTGCGCACATGATGTGAGATGGGTGC
130 GCGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
*
16114366 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAATCTCGAGAACTCACACCCCCTTAA
195 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
*
16114431 AGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTT
260 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTT
*
16114496 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTCTTTTGTGCATGCCAA
325 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* *
16114561 CAAAAAA-ACAAGGATCATGTCTACCAAGTTTGGGGCCAAA
390 -AAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAA
16114601 TTCCGATCTT
Statistics
Matches: 1189, Mismatches: 120, Indels: 37
0.88 0.09 0.03
Matches are distributed among these distances:
891 7 0.01
892 383 0.32
893 27 0.02
894 45 0.04
895 131 0.11
896 2 0.00
899 1 0.00
902 3 0.00
903 583 0.49
904 7 0.01
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (890 bp):
GTTCATTCCCAGTGTAAGATCGGAATGGACTGAGGGTTGCGCAGCACATGCTGGGCTCAGGCATG
TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGCCGGAGAACCTGACCGG
CGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
AAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACCCCTTAAAAAAATTTTAAAAAATC
CCGAACTGAAAAAGTTTCAAAAATCGTAAAAAATAGAAAATGAGTCGTCCTGCCATGAACTTCAC
GGGAAGGCTTAAGGGACCTTCGTAAGAATTTACAAGCCATAAAAAAGACATAGGCAGGTAGAAAT
ATGAAGATGTACCTAAACCCACCGACCACCCTATCAATCCACCGCTCGCGCATCCCATCTCTCTG
GCCGACGTAGTGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGACTTCATTCCC
AGTCTAAGATCAAACCAAACTGAGGGTTGCGGCAGCAGGATCAGCAGCACGCAGAGGGGGACCCG
ACTGATCCCTCGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCACCCAGACGCTCATTTCGTGG
GCTAACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAGA
Found at i:16114882 original size:26 final size:26
Alignment explanation
Indices: 16114846--16114898 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16114836 GTTGACTTAG
*
16114846 GCATATGGAGTTCATTCCCAGTTTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
*
16114872 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
16114898 G
1 G
16114899 ATCGGAATGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:16115454 original size:710 final size:707
Alignment explanation
Indices: 16113938--16115993 Score: 2996
Period size: 710 Copynumber: 2.9 Consensus size: 707
16113928 CGTAGTGCCC
* * * * * *
16113938 GCCCACCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATATGTACTTCATTCCCAGTCTAA
1 GCCCACCCGCACGCCCCCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAA
* * * * * * *
16114003 GATCAGACCGGACTGAGGGTTGCGGCAGCAGGAT-AGGCAGCACGCAGAGGGGGACCC-GACTGA
66 GATCAGACAGAACCGAGGGTTGCGGCTGTAGGATCA-GCAGCACGCAGAGGAGGACCCAG-CCGA
* * * * * *
16114066 TCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGTGCCCGTACGCTCATTTCGTGGGTTGA
129 TCCTCGGCTTGCGCATCCC-GCCCTCTGGCCGGTTGAGCGCCTGCACGCTCATTTCGTGGGTTGA
* * *
16114131 CTTAGGCATACAGAGTTCATTCCCAGTTTAAGCATATGGAGTTCATTCCCAATGTAAGATCGGAA
193 CTTAGGCATACGGAGTTCATTCCCAGTTTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGAA
* *
16114196 TGGACCGAGGGTTGCAGCAGCACATGCTGGGCTAAGGCATGTGCTGGTGCCGCATTTTTCTTCAT
258 TGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGT
16114261 CGGGGCACTATCATCGGAGGATCACC-AGAAAACCTGACTGGCGGCATTGGGGTTCCGACGATCG
323 CGGGGCACTATCATCGGAGGATCACCGA-AAAACCTGAC--GCGGCATTGGGGTTCCGACGATCG
16114325 TGGGGGCC-GAGGGGTGTGCGCACATGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGC
385 TGGGGGCCAG-GGGGTGTGCGCACATGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGC
16114389 CCCCTATCCCTCATCAAATCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGT
449 CCCCTATCCCTCATCAAATCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC-AGT
*
16114454 TTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
513 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
16114519 GTACACTTCGAGTTTTTAGCTGAATTCTTTTGTGCATGCCAACAAAAAAACAAGGATCATGTCTA
578 GTACACTTCGAGTTTTTAGCTGAATTCTTTTGTGCATGCCAACAAAAAAACAAGGATCATGTCTA
*
16114584 CCAAGTTTGGGGCCAAATTCCGATCTTAGACTGGGAATGAACTACGTCTCTTTGGCCGGCATAGT
643 CCAAGTTTGGGGCCAAATTCCGATCTTAGACTGGGAATGAACTACGACTCTTTGGCCGGCATAGT
* *
16114649 GCCCACCCGCACGCCCCCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAA
1 GCCCACCCGCACGCCCCCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAA
* * * * * *
16114714 GATCGGACGGAACCGAGGGTTGCAGCTGTAGGATCAGTAGCATGAAGAGGAGGACCCAGCCGATC
66 GATCAGACAGAACCGAGGGTTGCGGCTGTAGGATCAGCAGCACGCAGAGGAGGACCCAGCCGATC
* *
16114779 CTCGGCTTGCGCATCCCGCCCTCTGGCCGGTTGAGCACCTGCACGCTCGTTTCGTGGGTTGACTT
131 CTCGGCTTGCGCATCCCGCCCTCTGGCCGGTTGAGCGCCTGCACGCTCATTTCGTGGGTTGACTT
* *
16114844 AGGCATATGGAGTTCATTCCCAGTTTAAGCATATGGAGTTCATTCCTAGTCTAAGATCGGAATGG
196 AGGCATACGGAGTTCATTCCCAGTTTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGAATGG
* *
16114909 ACCGAGGGTTGCAGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGAATTTTTCTTCGTTGG
261 ACCGAGGGTTGCAGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGG
* * * *
16114974 GGCACTATCACCGGAGGATCACCGAAAAACCTGATCGACGACATTGGGGTTCCGATGATTGTGGG
326 GGCACTATCATCGGAGGATCACCGAAAAACCTGA-CG-CGGCATTGGGGTTCCGACGATCGTGGG
16115039 GGCCAGGGGGTGTGCGCACATGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
389 GGCCAGGGGGTGTGCGCACATGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * *
16115104 ATCCCTCATCAAACCTTGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
454 ATCCCTCATCAAATCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA-GTTTGCT
** *
16115169 GCCAGTAGCCATTAAAGCATCTGAAATGGGGCCACTTTTTTCAAATGGTCACAAAATCTTGTACA
518 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
*
16115234 CTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAAAACAAGGATCATGTCTACCAAG
583 CTTCGAGTTTTTAGCTGAATTCTTTTGTGCATGCCAACAAAAAAACAAGGATCATGTCTACCAAG
* * *
16115299 TTTGGGTCCAAATTCCGATCTTAGACTGGGAATGAACTACGACTCTTTGGCCTGCGTAGT
648 TTTGGGGCCAAATTCCGATCTTAGACTGGGAATGAACTACGACTCTTTGGCCGGCATAGT
* * *
16115359 GCCCGCCCGCACGCCCCCTCCTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAA
1 GCCCACCCGCACGCCCCCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAA
*
16115424 GATCAGACAGAACCGAGGGTTGTGGCTGTAGGATC-GACAGCACGCAGAGGAGGACCCAGCCGAT
66 GATCAGACAGAACCGAGGGTTGCGGCTGTAGGATCAG-CAGCACGCAGAGGAGGACCCAGCCGAT
* * *
16115488 CCTCGGCTTGCGCATCCCGCCCTCTGGCCGGTTAAGCGCCTGCACGCTCTTTTTGTGGGTTGACT
130 CCTCGGCTTGCGCATCCCGCCCTCTGGCCGGTTGAGCGCCTGCACGCTCATTTCGTGGGTTGACT
* * ** * *
16115553 TAGGCATACGGAGTTCTTTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATTA
195 TAGGCATACGGAGTTCATTCCCAGTTTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGAATG
* * *
16115618 GATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
260 GACCGAGGGTTGCAGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
* * *
16115683 GTGCACCATCGTCGGA-GA--ACCTG----ACC-G--GCGGCATTGGGGTTCCGACGATCG-GGG
325 GGGCACTATCATCGGAGGATCACC-GAAAAACCTGACGCGGCATTGGGGTTCCGACGATCGTGGG
* * *
16115737 GGCCGAGGGTGGTGTGCGCACATGATGTGCGATGGGTGTTGGTACATGGCCCTTATATTGGCCCC
389 GGCC-AGGG-GGTGTGCGCACATGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
*
16115802 CTATCCCTCATCAAATCTCGAGAACTCACACGCCCTTAAAGAGCATTTGAGA---T----TTT--
452 CTATCCCTCATCAAATCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGTTTGC
* **
16115858 TGCCAGTAGCCACTAAAGTGTCTGAAATGGGGACACTTTTCCCAAATGGTCACAAAATCTTGTAC
517 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * ** * *
16115923 ACTTCGAGTTTTTAGCTCAATTTTTTTTGTG--TGCCAACAAAAATACTGGGATCACGTCCACCA
582 ACTTCGAGTTTTTAGCTGAA-TTCTTTTGTGCATGCCAACAAAAAAACAAGGATCATGTCTACCA
16115986 AGTTTGGG
646 AGTTTGGG
16115994 AACAAAAGTC
Statistics
Matches: 1225, Mismatches: 108, Indels: 46
0.89 0.08 0.03
Matches are distributed among these distances:
689 35 0.03
690 78 0.06
691 9 0.01
692 3 0.00
697 1 0.00
698 7 0.01
699 24 0.02
700 101 0.08
703 1 0.00
704 3 0.00
707 3 0.00
708 1 0.00
709 5 0.00
710 827 0.68
711 125 0.10
712 2 0.00
ACGTcount: A:0.22, C:0.25, G:0.27, T:0.26
Consensus pattern (707 bp):
GCCCACCCGCACGCCCCCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAA
GATCAGACAGAACCGAGGGTTGCGGCTGTAGGATCAGCAGCACGCAGAGGAGGACCCAGCCGATC
CTCGGCTTGCGCATCCCGCCCTCTGGCCGGTTGAGCGCCTGCACGCTCATTTCGTGGGTTGACTT
AGGCATACGGAGTTCATTCCCAGTTTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGAATGG
ACCGAGGGTTGCAGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGG
GGCACTATCATCGGAGGATCACCGAAAAACCTGACGCGGCATTGGGGTTCCGACGATCGTGGGGG
CCAGGGGGTGTGCGCACATGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
CCCTCATCAAATCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGTTTGCTGCC
AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
CGAGTTTTTAGCTGAATTCTTTTGTGCATGCCAACAAAAAAACAAGGATCATGTCTACCAAGTTT
GGGGCCAAATTCCGATCTTAGACTGGGAATGAACTACGACTCTTTGGCCGGCATAGT
Found at i:16115592 original size:26 final size:26
Alignment explanation
Indices: 16115556--16115608 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16115546 GTTGACTTAG
* *
16115556 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16115582 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16115608 G
1 G
16115609 ATCGGATTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16116315 original size:26 final size:26
Alignment explanation
Indices: 16116281--16116331 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16116271 TGACTTAGGC
*
16116281 ATACTGAGTTCATTCCCAGTCTAAGT
1 ATACGGAGTTCATTCCCAGTCTAAGT
*
16116307 ATACGGAGTTCATTCCTAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
16116332 ATCGGACTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGT
Found at i:16119365 original size:26 final size:26
Alignment explanation
Indices: 16119318--16119370 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16119308 GTTGACATAG
*
16119318 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTATAA
**
16119344 GCATACGGAGTTCATTTTCAGTATAA
1 GCATACGGAGTTCATTCCCAGTATAA
16119370 G
1 G
16119371 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTATAA
Found at i:16121330 original size:832 final size:843
Alignment explanation
Indices: 16120491--16122534 Score: 2566
Period size: 857 Copynumber: 2.4 Consensus size: 843
16120481 TTGAAATGGG
* *
16120491 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTTTTATGC
1 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
*
16120556 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GAGCCAAAACTCCTTCCGAAAAAATT
66 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * *
16120620 TTAAAAAATCCTGAACCGTAAAGGGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCGTCTTGCC
131 TTAAAAAATCCTGAACCGTAAA-AGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
16120685 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAACAATGGCATTG
195 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA-AATGGCATTG
*
16120750 GCATGCATAAATATGAAGATGTGCCTAAAGCCACCTGCCACCCTATCGATCCATGGCTTGCGCAT
259 GCATGCAGAAATATGAAGATGTGCCTAAA-CCACCTGCCACCCTATCGATCCATGGCTTGCGCAT
* *
16120815 ACCGTCTCTCTGTCC-AT-CCAC-T-CGTTCGTCT-CG-TCGGTT-GGC-TTAGGCATACGCATA
323 ACCGTCTCTCTG-CCGATGCC-CGTCCGTCCGCCTCCGCTCGGTTCGGCATT-GGCATACGCATA
* * * *
16120872 CGGAGTGCATTC-CTAGTCAAATATCAGACC-AGGCTGAGGGTT-A-C-G-GCAGCACGTAGAGG
385 CGAAGTGCATTCGC-AGTCAAAGATCAGACCGA-ACTGAGGGTTGAGCAGAGCAGCACGCAGAGG
* * *** * * *
16120931 GTGACCCGGCC-AATCCCTGGCTTGCGCATCCTGGCCCTCTGGCCGGCTAAGCGCC-CGCACGCT
448 GGGACCCAGCCGAA-CCCTGGCTTGCGCATCCCACCCCTCAGGCCGACTAAGC-CCTCGCACACT
* * * * * *
16120994 CATTTCGTGGGTTGACTTAGGCACACGGAGTTCATTCCCAGTCTAGGATCGTACCGGGCCGAGGG
511 CATTTCATGGGTTGACTTAGGCACACAGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGG
** * * *
16121059 TTGTGGCAGCACATGCTGGCCTCGTGCATGTGCTGGTG-CATCATTTTTCTTC-GTCAGGGCACC
576 TTACGACAGCACATGCTGGCCTCGGGCATGTGCTGGTGCCAT-ATTTTTCTTCACT-AGGGCACC
16121122 ATC-ACCGGAGCATCACCGGAGAACCTGACCGGCGGCATT-AGGGTTCCGATAATC-GGGGGGCC
639 ATCGACC-GAGCATCACCGGAGAACCTGACCGGCGGCATTGA-GGTTCCGATAATCGGGGGGGCC
*
16121184 GGGGGG-GTGTACGCACATGATGTGC-ATTGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTA
702 GGGGGGTGTGT--GCACATGATGTGCGA-TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * * *
16121247 TCCTTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
764 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTGTACAGGTTTGCTA
* *
16121312 TCAGTAGCC-A-T-T
829 CCAATAGCCAAGTAT
* *
16121324 -ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTTGCTGAATTTTTTTGTGC
1 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * *
16121388 ATGCCAGCAAAAATACAAGGATCATGTCTGCCAGGTTTGGGGCCAAAACTCCTTCCG-AAAAATT
66 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * *
16121452 TTGAAAAAT-CTAGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGC
131 TTAAAAAATCCT-GAACCG-TAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
*
16121516 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATCAATTTACAAGCCATAAAATTGGCATT
194 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA-TGGCATT
* *
16121581 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCAATCCATGGCTTGCGTA
258 GGCATGCAGAAATATGAAGATGTGCCTAAA-CCACCTGCCACCCTATCGATCCATGGCTTGCGCA
* * * * *
16121646 TCCCATCTCTCTAGCCGGTGTAATGCCCGTCCGTCCGCCTGCCGCTCGTTTCGTCAGTTGGCTTA
322 TACCGTCTCTCT-GCC---G--ATGCCCGTCCGTCCGCCT-CCGCTCGGTTCGGCA-TTGGCATA
* * * * *
16121711 GGCATACGAATTTCATTCGCAGTCTAAGATCGGACCGAACTGAGGGTTGGGGCAGCAGGATCAGC
379 CGCATACGAAGTGCATTCGCAGTCAAAGATCAGACCGAACTGAGGGTT---G-AGCA-G---AGC
* * *
16121776 AGCACGCAGAGGGGGACCTAGCCGAACCCTGGCTTGCGCATCCCACCCCTCAGGTCGACTGAGCC
436 AGCACGCAGAGGGGGACCCAGCCGAACCCTGGCTTGCGCATCCCACCCCTCAGGCCGACTAAGCC
* * *
16121841 CTCGCACACTCGTTTTATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGAACC
501 CTCGCACACTCATTTCATGGGTTGACTTAGGCACACAGAGTTCATTCCCAGTCTAAGATCGAACC
* * *
16121906 AGACCGAGGGTTACGATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATTTTTTTCTTCACT
566 AGACCGAGGGTTACGACAGCACATGCTGGCCTCGGGCATGTGCTGGTGCCATATTTTTCTTCACT
* * * * *
16121971 AGGGCACCATCGTCCGATCATTACCGGAGAACCTGACCGGCGGCATTGAGGTTCCGGTGATCGGG
631 AGGGCACCATCGACCGAGCATCACCGGAGAACCTGACCGGCGGCATTGAGGTTCCGATAATCGGG
* *
16122036 GGGGCCGGGGGGTGTGTGCACATGGTGTGCGATGGGTGCTGGTACTTGGCCCTTGTATTGGCCCC
696 GGGGCCGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
*
16122101 CTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTGTACAGGTTTG
761 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTGTACAGGTTTG
16122166 CTACCAATAGCCATTAAAATGGCTGAAAT
826 CTACCAATAGCC-----AA--G-T---AT
* * *
16122195 GGGGACACTTTTTTCAAGTGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTGTTTTG
1 ---GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
16122260 TGCATGCCAACAAATATACAAGGATCACGTCTACCAACTTTGGGGCCAAAACTCCTTCCGAAAAA
63 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
*
16122325 ATTTTAAAAAATCCCGAACCGTAACAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
128 ATTTTAAAAAATCCTGAACCGTAA-AAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
16122390 GCCATGAAACTTCACGTGAA-GCTTTAAGGGACCATTGCATGAATTTACAAGCCTCTAAAATGGC
192 GCCATGAAACTTCACGTGAAGGC-TTAAGGGACCATTGTATGAATTTACAAGCC-ATAAAATGGC
* * * *
16122454 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACACACCTACCACCCTATCGATCCACGGCTTGC
255 ATTGGCATGCAGAAATATGAAGATGTGCCTAAAC-CACCTGCCACCCTATCGATCCATGGCTTGC
16122519 GCATACCGTCTCTCTG
319 GCATACCGTCTCTCTG
16122535 GCCGGCGTAG
Statistics
Matches: 1039, Mismatches: 105, Indels: 92
0.84 0.08 0.07
Matches are distributed among these distances:
831 4 0.00
832 286 0.28
833 21 0.02
838 3 0.00
839 3 0.00
840 7 0.01
842 2 0.00
843 5 0.00
844 2 0.00
845 41 0.04
846 4 0.00
850 1 0.00
851 1 0.00
853 1 0.00
856 2 0.00
857 321 0.31
858 24 0.02
859 4 0.00
863 1 0.00
867 1 0.00
871 1 0.00
875 116 0.11
876 182 0.18
877 6 0.01
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (843 bp):
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
TTAAAAAATCCTGAACCGTAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAATGGCATTGGC
ATGCAGAAATATGAAGATGTGCCTAAACCACCTGCCACCCTATCGATCCATGGCTTGCGCATACC
GTCTCTCTGCCGATGCCCGTCCGTCCGCCTCCGCTCGGTTCGGCATTGGCATACGCATACGAAGT
GCATTCGCAGTCAAAGATCAGACCGAACTGAGGGTTGAGCAGAGCAGCACGCAGAGGGGGACCCA
GCCGAACCCTGGCTTGCGCATCCCACCCCTCAGGCCGACTAAGCCCTCGCACACTCATTTCATGG
GTTGACTTAGGCACACAGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGACAGC
ACATGCTGGCCTCGGGCATGTGCTGGTGCCATATTTTTCTTCACTAGGGCACCATCGACCGAGCA
TCACCGGAGAACCTGACCGGCGGCATTGAGGTTCCGATAATCGGGGGGGCCGGGGGGTGTGTGCA
CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
AGAACTCACACCCCCTTAAAGAGCATTTGAGATTGTACAGGTTTGCTACCAATAGCCAAGTAT
Found at i:16123210 original size:712 final size:712
Alignment explanation
Indices: 16121866--16123338 Score: 2222
Period size: 712 Copynumber: 2.1 Consensus size: 712
16121856 TATGGGTTGA
* * * *
16121866 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGATAGCACATG
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTACGACAGCACATG
* ** * * *
16121931 CTGGGCTCGGGCATGTGCTGGTGCCATTTTTTTCTTCACTAGGGCACCATCGTCCGATCATTACC
66 CTGGGCTCAGGCATGTGCTGGTGCCACATTCTTCTTCACTAGGGCACCATCGTCCGAGCATCACC
* * ** *
16121996 GGAGAACCTGACCGGCGGCATTGAGGTTCCGGTGATCGGGGGGGCCGGGGGGTGTGTGCACATGG
131 GGAGAACCTGACCGACGGCATTGAGGTTCCGATGATCGGGGGGGCCGGGGGGTGTACGCACATGA
* * *
16122061 TGTGCGATGGGTGCTGGTACTTGGCCCTTGTATTGGCCCCCTATCCCTCATCAAACCTTGAGAAC
196 TGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCATGAGAAC
*
16122126 TCACACCCCCTTAAAGAGCATTTGAGATTGTACAGGTTTGCTACCAATAGCCATTAAAATGGCTG
261 TCACACCCCCTTAAAGAGCATTTGAGATTGTACAGGTTTGCTACCAATAGACATTAAAATGGCTG
*
16122191 AAATGGGGACACTTTTTTCAAGTGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTGT
326 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTGT
* * **
16122256 TTTGTGCATGCCAACAAATATACAAGGATCACGTCTACCAACTTTGGGGCCAAAACTCCTTCCGA
391 TTTGTGCAAGCCAACAAAGATACAAGGATCACGTCTACCAACTTTGGGGCCAAAACTAATTCCGA
* *
16122321 AAAAATTTTAAAAAATCCCGAACCGTAACAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCG
456 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
*
16122386 TCTTGCCATGAAACTTCACGTGAAGCTTTAAGGGACCATTGCATGAATTTACAAGCCTCTAAAAT
521 TCTTGCCATGAAACTTCACGTGAAGCTTTAAGGGACCATTGCATGAATTTACAAGCCTCAAAAAT
*
16122451 GGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACACACCTACCACCCTATCGATCCACGGCT
586 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACACACCTACCACCCTATCGATCCACGGCT
*
16122516 TGCGCATACCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-C-CCGCTCGTTTGGTCGATTGG
651 TGCGCATACCGTCTCTCCGGCCGGCGTAGTGCCCGCCCGCCACCGCTCGTTTGGTCGATTGG
* * * *
16122576 CTTAGGCATACGGAGTTCATTCGCAGTCTAAGATCGGA-CTGAACCAAGGGTTGCGGCAGCACAT
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCAAGGGTTACGACAGCACAT
* * * * *
16122640 GCTGGGCTCAGGCATGTGTTGGTGCCACATTCTTCTTC-GTCGGGGCACCATCGTCGGAGCATCG
65 GCTGGGCTCAGGCATGTGCTGGTGCCACATTCTTCTTCACT-AGGGCACCATCGTCCGAGCATCA
* * *
16122704 TCGGAGAACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGTGCCAGGAGGGGTGTACGCAC
129 CCGGAGAACCTGACCGACGGCATTGAGGTTCCGATGATCGGGGGGGCC-GG-GGGGTGTACGCAC
*
16122769 ATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCGAACCATGA
192 ATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCATGA
* * * * *
16122834 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGACATTAAAGTG
257 GAACTCACACCCCCTTAAAGAGCATTTGAGATTGTACAGGTTTGCTACCAATAGACATTAAAATG
* * *
16122899 TCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
322 GCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAA
* * *
16122964 TTGTTTTTTGCAAGCCAACCAAGATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTAATT
387 TTGTTTTGTGCAAGCCAACAAAGATACAAGGATCACGTCTACCAACTTTGGGGCCAAAACTAATT
* *
16123029 CC-AAAAAATTTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
452 CCGAAAAAA-TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
* *
16123093 AGTTGTCTTGCCATGAAACTTCACGTGAAGGC-TTAAGGGACCATTGTATGAATTTACAAGCCAT
516 AGTCGTCTTGCCATGAAACTTCACGTGAA-GCTTTAAGGGACCATTGCATGAATTTACAAGCC-T
* * *
16123157 -AAAAATGGCATTGGCATGCAGGAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
579 CAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACACACCTACCACCCTATCGATC
* * *
16123221 CACGGCTTGCGCATCCCGTCTCTCCGGCCGGTGTAGTGCCCGCCCGCCCGACCGCTCGTTTTGTC
644 CACGGCTTGCGCATACCGTCTCTCCGGCCGGCGTAGTGCCCGCCCG-CC-ACCGCTCGTTTGGTC
*
16123286 GGTTGG
707 GATTGG
* *
16123292 CTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGGACCAGACCAA
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAA
16123339 TTTTGCAGTA
Statistics
Matches: 683, Mismatches: 68, Indels: 18
0.89 0.09 0.02
Matches are distributed among these distances:
709 3 0.00
710 147 0.22
711 8 0.01
712 461 0.67
713 3 0.00
714 1 0.00
716 58 0.08
717 2 0.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (712 bp):
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTACGACAGCACATG
CTGGGCTCAGGCATGTGCTGGTGCCACATTCTTCTTCACTAGGGCACCATCGTCCGAGCATCACC
GGAGAACCTGACCGACGGCATTGAGGTTCCGATGATCGGGGGGGCCGGGGGGTGTACGCACATGA
TGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCATGAGAAC
TCACACCCCCTTAAAGAGCATTTGAGATTGTACAGGTTTGCTACCAATAGACATTAAAATGGCTG
AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTGT
TTTGTGCAAGCCAACAAAGATACAAGGATCACGTCTACCAACTTTGGGGCCAAAACTAATTCCGA
AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
TCTTGCCATGAAACTTCACGTGAAGCTTTAAGGGACCATTGCATGAATTTACAAGCCTCAAAAAT
GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACACACCTACCACCCTATCGATCCACGGCT
TGCGCATACCGTCTCTCCGGCCGGCGTAGTGCCCGCCCGCCACCGCTCGTTTGGTCGATTGG
Found at i:16123485 original size:26 final size:26
Alignment explanation
Indices: 16123455--16123507 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16123445 CTTGACTTAG
16123455 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
**
16123481 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16123507 G
1 G
16123508 GTCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16125094 original size:26 final size:26
Alignment explanation
Indices: 16125058--16125110 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16125048 GTTGACTTAG
*
16125058 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16125084 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16125110 G
1 G
16125111 ATCGGATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16126261 original size:876 final size:872
Alignment explanation
Indices: 16124159--16127541 Score: 4176
Period size: 876 Copynumber: 3.9 Consensus size: 872
16124149 CCGCCCGCCT
* * * * * *
16124159 GCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAAATCAGAC
1 GCCCGCACACTCGTTACGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAT
* * * * * * * *
16124224 CGGACCGAGGGTTGCAACAGCACATGCTAGGCTCGGGGATG-G-T-GT--CGTATTTTTCTTTGC
66 CAGACCGAGGGTTGCAGCAACAAATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCGC
* * * ** * *
16124284 TGAGGCACCATCGTCGAAGCATCGTCGGAGAACCTGACCGATGGCATTGAGGTTCCAACGATC-G
131 CG-GGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCAACGATCGG
* * * * * * *
16124348 GGGGCGGGGGGGTGTGCGCACGTGATGTGCGGTGGGTGCTGGTACTCGACCCTTCTATTGGCCCC
195 GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCC
* *
16124413 CTATCCCTTATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTG
260 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* * *
16124478 CTACCAATAGCCATTAAAATCGT-TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTAT
325 CTACCAGTAGCCATTAAAGT-GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * *
16124542 ACACTTCGAGTTTTTTGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTATACC
389 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * * *
16124607 AAGTTTGGGTCCAAAACTCCTTCCGAAAAAATTTAAACAAAATCCCGAACCGTAAAAAGTTTCAA
454 AAGTTTGGGGCAAAAACTCCCTCCGAAAAAATTTTAA-AAAATCCCGAACCGTAAAAAGTTTCAA
* * * * *
16124672 AAATCGTGAAAAATAGTAAACGAGTCGTCTTGCCATGAAACTTCACATGATGGCTTAAGGGACCA
518 AAATTGAGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
16124737 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACC
583 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACC
** * *
16124802 CACCTACCACCCTATCGATCCACTACTTGCGTATCCCGTTTCTCTGGCCGGCGCAGTGG-CCGCC
648 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGCAGTGGCCCGCC
* * * * *
16124866 TGTCCGCCCATCTCGTTTCGTCGATTGGCTTAGGCATACTGAGTTCATTCCCAATCTAAGATCAG
713 CGTCCGCCC-GCTCATTTCGTCGGTTGGCTTAGGCATACTGAGTTCATTCCCAATCTAAGATCGG
* * * * * * * * *
16124931 ACCGGACTGAGGGTTGCGATAGCTGGATCGCCAGCACGCAGATGGGGACCCAATCGATCCCCGGC
777 ATCGGACCGAGGGTTGCGACAGCAGGATTGGCAGCACGTAGACGGGGACCCGATCGATCCCCGGC
* * *
16124996 TTACGTATCCCGCCCCTCTAGCCAGCTGAGC
842 TTGCGCATCCCGCCCCTCTAGCCGGCTGAGC
* * *
16125027 GCCCGCACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCTCAGTCTAAGCAT-ATG
1 GCCCGCACACTCGTTACGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATCA--
** * * * ** * * * * *
16125091 GAGTTCATTCCCA--GTCT-AAG-ATCGGATCGAAC-GAGCTCGAGCATGTTCTGGAGTCGCATG
63 GA--TCAGACCGAGGGT-TGCAGCAACAAAT-G--CTGGGCTCGGGCATGTGCTGGTG-C-CATA
* * *
16125151 TTTCTTCTTCG--GGGCACCATCGCCGGAG-A--ACC--TG-A-CTG---G-CGGCAATAGGGTT
120 TTT-TTCTTCGCCGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTT
** * * * *
16125203 CCGGCGATCGGGTGGGTCGAGGGGGTGTCCGCACATGATGTGCGATGGGTGCTGGTACTTGGCAC
184 CCAACGATCGGG-GGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCC
* *
16125268 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCTCTTAAAGGGCATTTGAGA
247 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
*
16125333 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
312 TTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* *
16125398 ACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTTTTTATGCATGCCAACAAAAATACAAGG
377 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
*
16125463 ATCACGTCTACCAAGTTTGGGGCAAAAACTCCCTCCGAAAAAATTTTAAAAAATCCCAAACCGTA
442 ATCACGTCTACCAAGTTTGGGGCAAAAACTCCCTCCGAAAAAATTTTAAAAAATCCCGAACCGTA
* ** * *
16125528 AAATGTTTTTAAAATTGAGAAAAATAAAAAACGAGTCGTCTT-CCATGAAACTTCAGGTGAAGGC
507 AAAAGTTTCAAAAATTGAGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* ***
16125592 TTAAGGGACCATTGTATGAATTTACAAGCGATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
572 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGAT
* * *
16125657 GTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGGGCATCCCGTCTCTTTGGCCGGCGC
637 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGC
* * *
16125722 AGTGCCCGCCCGCCCGTCTGCCCGCTCATTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCC
702 AGTG---GCCCGCCCGTCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACTGAGTTCATTCCC
* * * *
16125787 ATTCTAAGATTGGATCAGACCGAGGGTTGCGGCAGCAGGATTGGCAGCACGTAGACGGGGACCCG
764 AATCTAAGATCGGATCGGACCGAGGGTTGCGACAGCAGGATTGGCAGCACGTAGACGGGGACCCG
** * * * * *
16125852 GCCGATCCTCAGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGC
829 ATCGATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCGGCTGAGC
* * *
16125896 GCCCGCACACTCGTTACGTAGGTTGACTTAGGAATATGGAGTTCATTCCCAGTCTAAGATCGGAT
1 GCCCGCACACTCGTTACGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAT
** *
16125961 CAGACCGAGGGTTGGGGCAATAAATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCGC
66 CAGACCGAGGGTTGCAGCAACAAATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCGC
* * *
16126026 CGCGGCACCATCGCCGGAGAATCACCGGAGAACCTGACCAACGGTATTGGGGTTCCAACGATCGG
131 CG-GGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCAACGATCGG
*
16126091 GTGGGCCGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCC
195 G-GGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCC
* *
16126156 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGGGCATTTAAGATTTTACAGGTTT
259 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* *
16126221 GCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
324 GCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
16126286 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
389 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * * * * *
16126351 ATGTTTGGGGCCAAAACTCCCTCCGAAAAAATTTTAAAAAATCCTGAATCATAAAACGTTTCAAA
454 AAGTTTGGGGCAAAAACTCCCTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAA
* *
16126416 AATTGTGAAAAATAGAAAAGGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
519 AATTGAGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
*
16126481 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTACCTAAACCC
584 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCC
* * * *
16126546 ACCAACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGT-GCCTGCCC
649 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGCAGTGGCCCGCCC
* * *
16126610 GTCTGTCCGGATGCTCATTTCGTCGGTTGGCTTAGGCATACTGAGTTCATTCCCAGTCTAAGATC
714 GTCCG-CC---CGCTCATTTCGTCGGTTGGCTTAGGCATACTGAGTTCATTCCCAATCTAAGATC
* * * * * * *
16126675 GGATCGGACCGAGTGTTCCGACAGCAAGATTGGTAGCACGTAAAGGGGGACCCGATCAATCCCCG
775 GGATCGGACCGAGGGTTGCGACAGCAGGATTGGCAGCACGTAGACGGGGACCCGATCGATCCCCG
*
16126740 GCTTGCGCATCCCGCCCCTCTAGCCGGTTGAGC
840 GCTTGCGCATCCCGCCCCTCTAGCCGGCTGAGC
* * * * * * *
16126773 GTCCTCACGGTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGCATACAGAGTTC
1 GCCCGCAC--AC-T-CGTT-AC----G--T--AG-GTTGA----C--T-TAGGCATACGGAGTTC
* *
16126838 ATTCCCAGTCTAAGATCAGA-CAGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTG
45 ATTCCCAGTCTAAGATCAGATCA-GACCGAGGGTTGCAGCAACAAATGCTGGGCTCGGGCATGTG
* * * *
16126902 CTGGTGCTGCATTTTTGTTCATCG--GGGCACCATCGTCGGAGCATCACCAGAGAACCTGACCGA
109 CTGGTGC--CATATTT-TTCTTCGCCGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGA
* * * * * *
16126965 CGACATTGGGGTTCCGATGATCGGGGGGCCGAGGGGTGTGTCCGCACACGATATGCGATGGGTGC
171 CGGCATTGGGGTTCCAACGATCGGGGGGCCG-GGGG-GTGTGCGCACATGATGTGCGATGGGTGC
* * * *
16127030 TAGTACTTGGCCCTTATATTAGCCCCCTATACCACATCAAACCTTGAGAACTCACACCCCCTTAA
234 TAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
*
16127095 AGAGCATTTGAGATTTTATAGGTTTGCTACCAGTAG-CATTAAAGTGTCTGAAATGGGGACACTT
299 AGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * *
16127159 TTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGTTGAATTTTTTTGTGCGTGCCAA
364 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * * *
16127224 AAAAAATACAAGGATCACGTCCACCAACTTTGGGG-AAAAAATCCTTCCGAAAAAATTTTAAAAA
429 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCCTCCGAAAAAATTTTAAAAA
* * *
16127288 ATCCCGAACCGCAAAAAGTTTTAAAAATT-ATGAAAAATAGAAAACGAGTCATCTTGCCATGAAA
494 ATCCCGAACCGTAAAAAGTTTCAAAAATTGA-GAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* ** *
16127352 CTTCACGTGAAGGCTTAAGGG-CCACTGTATGAATTTACAAGCCATAAAAATGGCATCAGCATAT
558 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAT
* *
16127416 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGATTGCGCATCCTGTC
623 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * *
16127481 TCTCTGGCCGGCGTAGT-GCCCGCCCGTCCACCCGCTCATTTCGTCAGTTGGCTTAGGCATA
688 TCTCTGGCCGGCGCAGTGGCCCGCCCGTCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATA
16127542 TGATGCTCAT
Statistics
Matches: 2167, Mismatches: 270, Indels: 132
0.84 0.11 0.05
Matches are distributed among these distances:
863 7 0.00
864 6 0.00
865 25 0.01
866 179 0.08
867 63 0.03
868 320 0.15
869 188 0.09
870 19 0.01
871 12 0.01
872 6 0.00
873 17 0.01
874 3 0.00
875 1 0.00
876 340 0.16
877 306 0.14
878 5 0.00
879 7 0.00
880 1 0.00
881 3 0.00
882 2 0.00
886 1 0.00
888 1 0.00
890 2 0.00
891 4 0.00
892 27 0.01
895 3 0.00
896 126 0.06
897 110 0.05
898 253 0.12
899 118 0.05
900 6 0.00
901 6 0.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (872 bp):
GCCCGCACACTCGTTACGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAT
CAGACCGAGGGTTGCAGCAACAAATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCGC
CGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCAACGATCGGG
GGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCC
TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
TACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
GTTTGGGGCAAAAACTCCCTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
TTGAGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
TATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCAC
CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGCAGTGGCCCGCCCGT
CCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACTGAGTTCATTCCCAATCTAAGATCGGATCG
GACCGAGGGTTGCGACAGCAGGATTGGCAGCACGTAGACGGGGACCCGATCGATCCCCGGCTTGC
GCATCCCGCCCCTCTAGCCGGCTGAGC
Found at i:16126835 original size:26 final size:26
Alignment explanation
Indices: 16126799--16126851 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16126789 GTTGACTTAG
16126799 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
16126825 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
16126851 G
1 G
16126852 ATCAGACAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:16129769 original size:26 final size:26
Alignment explanation
Indices: 16129740--16129789 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
16129730 GACTTAGGCG
* *
16129740 TACGAAGTTTATTCCCAGTCTAAGCA
1 TACGAAGTTCATTCCCAATCTAAGCA
16129766 TACGAAGTTCATTCCCAATCTAAG
1 TACGAAGTTCATTCCCAATCTAAG
16129790 ATCGGATCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.30
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAATCTAAGCA
Found at i:16130626 original size:26 final size:26
Alignment explanation
Indices: 16130596--16130648 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16130586 GTTGACTTAG
16130596 GCATACGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
*
16130622 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
16130648 G
1 G
16130649 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTACCAGTCTAA
Found at i:16131029 original size:220 final size:221
Alignment explanation
Indices: 16130622--16131059 Score: 585
Period size: 220 Copynumber: 2.0 Consensus size: 221
16130612 ACCAGTCTAA
* *
16130622 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGCTGCGGCAGTACATGCTAGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGCTGCGGCAGCACATGCTAGG
* * * *
16130687 CTCGGACATGTGCTGGTGTCACATTTTTCTTCACCGGGGCACCGTCACCAGAGCATCACCAGAGA
66 CTCGGACATGTGCTAGTGCCACATTTTTCTTCACCGGCGCACCATCACCAGAGCATCACCAGAGA
* ** * *
16130752 GCCTCACCGGTGGCATTGGGGTTCTGACGATCAGTGGGGCAGGGAGGTGTACGCACATGATGTGC
131 ACCTCACCGACGACATTGGGGTTCTGACGATCAGGGGGGCAGGGAGGTGTACGCACATGATGTGC
16130817 GATGGGTGCTGGTACTTGGCCCTTAG
196 GATGGGTGCTGGTACTTGGCCCTTAG
* * * *
16130843 GCATACGAAGTTCGTTCCCAGTCTAAGATCGGATCAGACCGA-TGCTGCGGCAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGCTGCGGCAGCACATGCTAGG
** * * ** *
16130907 CTC-GAGCATGTGCTAGTGCCACATTTTTCTTCATTGGCGCACCATCATCGGAGCATCGTCGGAG
66 CTCGGA-CATGTGCTAGTGCCACATTTTTCTTCACCGGCGCACCATCACCAGAGCATCACCAGAG
* * * * * *
16130971 AACCTGACCGACGATATTGGGGTT-TCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
130 AACCTCACCGACGACATTGGGGTTCT-GACGATCAGGGGGGCAGGGAGGTGTACGCACATGATGT
16131035 GCGATGGGTGCTGGTACTTGGCCCT
194 GCGATGGGTGCTGGTACTTGGCCCT
16131060 CATATTGGCC
Statistics
Matches: 187, Mismatches: 28, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
219 3 0.02
220 145 0.78
221 39 0.21
ACGTcount: A:0.19, C:0.25, G:0.33, T:0.23
Consensus pattern (221 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGCTGCGGCAGCACATGCTAGG
CTCGGACATGTGCTAGTGCCACATTTTTCTTCACCGGCGCACCATCACCAGAGCATCACCAGAGA
ACCTCACCGACGACATTGGGGTTCTGACGATCAGGGGGGCAGGGAGGTGTACGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTAG
Found at i:16132269 original size:221 final size:218
Alignment explanation
Indices: 16131752--16132397 Score: 843
Period size: 221 Copynumber: 3.0 Consensus size: 218
16131742 AAGCATATGG
* * *
16131752 AGTTCATT-CCAGTCTAAGATCGGACCGGACCAAGGGCTGCGGCAGCACATGCTAGGCTC-AGGC
1 AGTTCGTTCCCAGTCTAAGATCGGACCAGACCAAGGGCTGCGGCAGCACATGCTGGGCTCGA-GC
* * **** * * ** * * *
16131815 ATGTGCTGGTGTCGCATTTTTCTTCACCAGGGCATCGTCGTCGGAGCATCACCAGAGAGCCTCAC
65 ATGTGCTGGTGCCACATTTTTCTTCGTTGGGGCACCATCACCGGAGCATCACCGGAGAACCTGAC
* * * * * *
16131880 CGGTGGCATTAGGG-TTCCGACGATCGGTGGGCAGGGGGTGTGCACACATGATGTGCGATGGGTG
130 CGGTGGCATTGGGGTTTCTG-CGATCGGGGGGCCGGGGGTGTACGCACATGATGTGCGATGGGTG
*
16131944 CTGGTACTTGGCCCTTGGCATACGA
194 CTGGTACTTAGCCCTTGGCATACGA
** * * * *
16131969 AGTTCGTTCCCAGTCTAAGATCGGATTAGACCGA-CGCTACGACAGCACATGCTGGGCTCGAGCA
1 AGTTCGTTCCCAGTCTAAGATCGGACCAGACCAAGGGCTGCGGCAGCACATGCTGGGCTCGAGCA
* * *
16132033 TGTGCTAGTGCCACATTTTTCTTCGTTGGGGCACCATCACCGGAGCATCACCGGAGAACTTGATC
66 TGTGCTGGTGCCACATTTTTCTTCGTTGGGGCACCATCACCGGAGCATCACCGGAGAACCTGACC
16132098 GGTGGCATTGGGGTTTCTGCGATCGAGGGGGCCGAGGGGTGTACGCACATGATGTGCGATGGGTG
131 GGTGGCATTGGGGTTTCTGCGATCG-GGGGGCCG-GGGGTGTACGCACATGATGTGCGATGGGTG
*
16132163 CTGGTACTTAGCCTTTAGGCATACGA
194 CTGGTACTTAGCCCTT-GGCATACGA
* *
16132189 AGTTCGTTCCCAGTCTAAGATTGGACCAGACCAAGGGCTGCGGTAGCACATGCTGGGCTCGAGCA
1 AGTTCGTTCCCAGTCTAAGATCGGACCAGACCAAGGGCTGCGGCAGCACATGCTGGGCTCGAGCA
16132254 TGTGCTGGTGCCACATTTTTCTTCGTTGGGGCACCATCACCGGAGCATCACCGGAGAACCTGACC
66 TGTGCTGGTGCCACATTTTTCTTCGTTGGGGCACCATCACCGGAGCATCACCGGAGAACCTGACC
* * * *
16132319 AGTGGCATTGGGGTTCCTGCGATC-GGGGGCCGGGGGGTGTACGCACTTGATGTGTGATGGGTGC
131 GGTGGCATTGGGGTTTCTGCGATCGGGGGGCC-GGGGGTGTACGCACATGATGTGCGATGGGTGC
*
16132383 TAGTACTTAGCCCTT
195 TGGTACTTAGCCCTT
16132398 ATATTGGCCC
Statistics
Matches: 371, Mismatches: 50, Indels: 14
0.85 0.11 0.03
Matches are distributed among these distances:
217 98 0.26
218 32 0.09
219 91 0.25
220 40 0.11
221 110 0.30
ACGTcount: A:0.19, C:0.25, G:0.33, T:0.24
Consensus pattern (218 bp):
AGTTCGTTCCCAGTCTAAGATCGGACCAGACCAAGGGCTGCGGCAGCACATGCTGGGCTCGAGCA
TGTGCTGGTGCCACATTTTTCTTCGTTGGGGCACCATCACCGGAGCATCACCGGAGAACCTGACC
GGTGGCATTGGGGTTTCTGCGATCGGGGGGCCGGGGGTGTACGCACATGATGTGCGATGGGTGCT
GGTACTTAGCCCTTGGCATACGA
Found at i:16132741 original size:26 final size:26
Alignment explanation
Indices: 16132711--16132763 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16132701 GTTGACTTAG
*
16132711 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16132737 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16132763 G
1 G
16132764 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16135094 original size:221 final size:219
Alignment explanation
Indices: 16134609--16135216 Score: 803
Period size: 221 Copynumber: 2.8 Consensus size: 219
16134599 AGGGTTGCAC
* * * * * * *
16134609 CAGCACATGCTAGGATC-AGGCATGTGCTGGTGTCGCATTTGTCTTCATCGGGGCACCATCACCG
1 CAGCACATGCTGGGCTCGA-GCATGTGCTGGTGCCACATTTTTCTTCGTTGGGGCACCATCACCG
* * * * * **
16134673 GAGCATCACCAGAGAGCCTCACCGGTGGCATTAGGG-TTCCGACGATCGGTGGGG-TAGGGGGTG
65 GAGCATCACCGGAGAACCTGACCGGTGGCATTGGGGTTTCTG-CGATCGG-GGGGCCGGGGGGTG
* *
16134736 TGCGCACATGATGTGCGATGGTTGCTGGTACTTGGCCCTT-GGCATACGAAGTTCATTCACAGTC
128 TACGCACATGATGTGCGATGGTTGCTGGTACTTAGCCCTTAGGCATACGAAGTTCATTCACAGTC
* * *
16134800 TAAGATCGGATCAGACCGATGCTACGA
193 TAAGATCGGACCAGACCAAGGCTACGA
* * *
16134827 CAGCACATGCTGGGCTCGAGCATGTGCTAGTGCCATATTTTTCTTCGTTGGCGCACCATCACCGG
1 CAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTTGGGGCACCATCACCGG
*
16134892 AGCATCACCGGAGAACTTGACCGGTGGCATTGGGGTTTCTGCGATCGAGGGGGCCGGGGGGTGTA
66 AGCATCACCGGAGAACCTGACCGGTGGCATTGGGGTTTCTGCGATCG-GGGGGCCGGGGGGTGTA
* * *
16134957 CGCACATGATGTGCAATGGTTGCTGGTACTTAGCCCTTAGGCATATGAAGTTCGA-TCCCAGTCT
130 CGCACATGATGTGCGATGGTTGCTGGTACTTAGCCCTTAGGCATACGAAGTTC-ATTCACAGTCT
* *
16135021 AAGATTGGACCAGACCAAGGGCTACGG
194 AAGATCGGACCAGACCAA-GGCTACGA
* *
16135048 TAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTTGGGGCACCATCACCAG
1 CAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTTGGGGCACCATCACCGG
* *
16135113 AGCATCACCGGAGAACCTGACCAGTGGCATTGGGGTTCCTGCGATCGGGGGGCCGGGGGGGTGTA
66 AGCATCACCGGAGAACCTGACCGGTGGCATTGGGGTTTCTGCGATCGGGGGGCC-GGGGGGTGTA
* * *
16135178 CGCACTTGATGTGCGATGGGTGCTAGTACTTAGCCCTTA
130 CGCACATGATGTGCGATGGTTGCTGGTACTTAGCCCTTA
16135217 TATTGGCCCT
Statistics
Matches: 342, Mismatches: 40, Indels: 13
0.87 0.10 0.03
Matches are distributed among these distances:
218 93 0.27
219 50 0.15
220 43 0.13
221 156 0.46
ACGTcount: A:0.20, C:0.24, G:0.32, T:0.24
Consensus pattern (219 bp):
CAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTTGGGGCACCATCACCGG
AGCATCACCGGAGAACCTGACCGGTGGCATTGGGGTTTCTGCGATCGGGGGGCCGGGGGGTGTAC
GCACATGATGTGCGATGGTTGCTGGTACTTAGCCCTTAGGCATACGAAGTTCATTCACAGTCTAA
GATCGGACCAGACCAAGGCTACGA
Found at i:16135558 original size:26 final size:26
Alignment explanation
Indices: 16135528--16135580 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16135518 GTTGACTTAG
*
16135528 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16135554 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16135580 G
1 G
16135581 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16139184 original size:26 final size:26
Alignment explanation
Indices: 16139150--16139199 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
16139140 GACTTAGGCA
* *
16139150 TACGGAGTTCATTCCTAGTCTAAGCG
1 TACGAAGTTCATTCCCAGTCTAAGCG
16139176 TACGAAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
16139200 ATTGGACCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCG
Found at i:16139695 original size:900 final size:894
Alignment explanation
Indices: 16136459--16142478 Score: 7828
Period size: 873 Copynumber: 6.8 Consensus size: 894
16136449 TGGCGAGCAG
* * * *
16136459 GGGTTGACTTAGCCATTCAGAGTTCATTCCCAGTCTAAGCATAC-AGAGTTCATTCCCACTCTAA
1 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA-AGTTCATTCCCAGTCTAA
* * * * *
16136523 GATCGGATCGGAGCGAGGGTTGCGGCAGCACATGCTGCGCTCGGGCATGTGCTGGTGCCGCATTT
65 GATCGGACCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
* * *
16136588 GTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGATGGCATTGGGGTTCCG
130 TTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCG
* * * *
16136653 ACGATCGGGGGGGCCGGGGGGGGTGTGCGCCCATGATGTACGATGGGTACTGGTACTTGGCCCTT
195 GCGATCGGGGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* * *
16136718 ATATTGGCCCCTTATCCCTCATCAAACCTTGAGAACTCACACCCCTTTAAAGAGCATTTGAGATT
258 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* * *
16136783 TTATAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATTGTCAC
323 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* * *
16136848 AAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAACAAAAATACCAGGAT
388 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGAT
* * * * * * *
16136913 CATGTCTACCAAGTTAGGAGCCAAAGCTCCTTCCAAAAAAATTTTAAGAAATCTCGAACCGTAAA
453 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAA
* * ** * *
16136978 AAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCATCTCACCATGAACCTTCATGTGAAGGCTT
518 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* * *
16137043 AAGGGGCCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGTATGCTGAAATATGAAGATGT
583 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
*** *
16137108 GCCTAAACCCACCTACCACCCTATCGATCCATAACTTGCGCATCCCGTCTCTCTGGCCGACGTAG
648 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
* * * * * **
16137173 TGCCCGCTCGCCTGCCCGCTTGTTTTGTCAGTTGGCTTAGGCATACGGAGTTCATTCGCAACCTA
713 TGCCCG--C-CC-ACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * ** * * * * *
16137238 AGAT-TGAACTGGACCAAGGGTTGCGGTAGCAGTATCGGTAGCACGTAGAGGGGGACTCGGTCGA
774 AGATCAG-ACCGGA-TGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGA
* * * * * ** * * *
16137302 TCCTCAGCTTGCGCATCCTGCCCCTCTGGGCGACTGAATGCCCACACGGTCGTTTCGT
837 TCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCAT
* *
16137360 GGGTTGACTTAGGCATACAGAGTTCATTCCCA----ATG--T---AAG---ATT----G-----G
1 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAG
* * * * * *
16137404 ATC--A--A-ACCGAGGGTTGCACCAGCACATGCTAGGATCAGGCATGTGCTGGTACCGTATTTT
66 ATCGGACCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT
* * * **
16137464 TCTTCGTCGGGGCACCATCGTCGGAGCATCATCAGAGAACTTGACCGGTGGCATTGGGGTTCCGG
131 TCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGG
** * *
16137529 CGATCGGGGGGGCTTGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCATATA
196 CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* * *
16137594 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAACCCCTTAAAGAGAATTTGAGATTTTC
261 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
** *
16137659 CACATTTTCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
326 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
*
16137724 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAT
391 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAC
* * *
16137789 GTCTACCAAGTCTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGAAAAAAG
456 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG
* *
16137854 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAG
521 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
16137919 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC
586 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC
**
16137984 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGATGTAATGC
651 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT-A-G-
* * * *
16138049 CCACATGCCTGCCCGCCCACTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
713 -----TGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * *
16138114 AAGATTAGACTGGATAGAGGGTTGTGGTAGTAGGATCGGCAGCATGCAGAGGGGGACCCGATCGA
773 AAGATCAGACCGGAT-GAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGA
* * * *
16138179 TCCCCGGCTTGCGCATCCCGCCCCTCTAGCCGGCTGAGCGCACGCACGCTCATTTCGT
837 TCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCAT
* * * *
16138237 GGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGCCTAAG
1 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAG
* * * * *
16138302 ATCGGACCTGATCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCAAG-GATCGGTGCCGTATTT
66 ATCGGACCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCT-GGTGCCGCATTT
** * *
16138366 TTCTTCACCGGGGCACCATCGTTGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTTCG
130 TTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCG
* * *
16138431 TCGATCGGGGGGGCCGGGGAGGGTGTGCGCACATGATGTGAGATGGGTGCTGGTAATTGGCCCTT
195 GCGATCGGGGGGGCC-GGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* * * *
16138496 ATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAAACCACCTTAAAGAGCATTTCAGATT
258 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* * * * *
16138561 TTACAGGTTTGCTACCAGTAGCCATTAAAGTGTTTGTAATGGGGACACTTTTTTAAAATCGTCAC
323 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* * *
16138626 AAAATCTTGTACACTTCAAGTTTTTAGTTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGAT
388 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGAT
* * * * * * *
16138691 CAAGTCTACCAAGTTTGGGGCCAAAAATCTTTCCAAAAAAATTTTAAAAAATTCCAAACTGTAAA
453 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAA
*
16138756 AAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
518 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
16138821 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
583 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
* *
16138886 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCAGCGTAG
648 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
* * * * *
16138951 TGCCCGCCCACCTGCTCGTTTCATCGGTTGACTTAGACATACGAAGTTCATTCCCAGTCTAAGAT
713 TGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * ** **
16139016 CAGACCGGACTGAGGGTTGTGGTAGCATGATCGGTAGCACATAGAGGGGGGACCCGGCCGATCCC
778 CAGACCGGA-TGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGA-GGGGGACCCGATCGATCCC
* * * * *
16139081 TGGCTTACGCATCCCACCCCTCTGGTCGGCTGAGCGCCCCCACGCTCGTTTCAT
841 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCAT
* *
16139135 GGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCGTACGAAGTTCATTCCCAGTCTAAG
1 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAG
* * * * * * * *
16139200 ATTGGACCGGACCGAAGGTTGTAGCATCACAGGCTGGGCTCGGGCATGTGCAGGTGCCACATTTT
66 ATCGGACCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT
* * * *
16139265 TCTTCGTCGGGCCACCATCGTCGGAGCATCACCGGAAAACCTGGACCGACGGCATTGAGGTTTCG
131 TCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCT-GACCGACGGCATTGGGGTTCCG
* * *
16139330 GCAATCGAGGGGGGCCGGAGGGGGGTGTGCACATATGATGTGCGATGGGTGCTGGTACTTGGCCC
195 GCGATCG-GGGGGGCC---GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
*
16139395 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGATCTCACACCCCCTTAAAGAGCATTTGAGA
256 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* *
16139460 TTTTAAAGGTTTGCTGCCAGTA-CCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTC
321 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* * * * * *
16139524 ACAAAATCTTGTACACTTTGAGTTTTTTGCTGAATCTTCTTGTGCATGCCAACAAAAATAGAAGG
386 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGG
* * ** * **
16139589 ATCATGTTTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAATCACA
451 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTA
*
16139654 AAAATTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG-
516 AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* * *
16139718 TTAAGAGACCATTGTATGAATTTACAAGCCTTAAAAATGGCATTGGCAAGCAGAAATATGAAGAT
581 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
* *
16139783 GTGGCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTTTCTCTGGCCGGCGT
646 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT
* * *
16139848 AGTGCCCGCCCGCCCGCCCACTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTCCATTCCCAGTC
711 AGTGCCCGCCCACCCG----CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * * * * *
16139913 TAAGATCGGACCAGATCGAGGGTTGCAGTAGCAAGATCGACAGAACGCAGAGGGGGACCCGATCG
772 TAAGATCAGACCGGAT-GAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCG
* * *
16139978 ATCCCCGGCTTGCGCATCCCGTCCCTTTGGCCGGCTGAGAGCCCGCACGCTCGTTTCAT
836 ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCAT
* *
16140037 GGGTTAACTTAGGCATACGGAGTTCATTCACAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAG
1 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAG
* * *
16140102 ATCGGACCAGACCGAGGGTTGC-GACAGCACATGCTGGGCTCAGGCATGTGCTGGTGTTCGTATT
66 ATCGGACCAGACCGAGGGTTGCAG-CAGCACATGCTGGGCTCGGGCATGTGCTGGTG-CCGCATT
* * * * * *
16140166 TTTCTTCGTCAGGGCACCATCGCCGAAGCATC-CCAGGAGAACCTGATCGGCGGCTTTGGGGTTC
129 TTTCTTCGTCGGGGCACCATCGTCGGAGCATCACC-GGAGAACCTGACCGACGGCATTGGGGTTC
* *
16140230 CGGCGATC-GGGGGTCC-GGGGGCGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG-CCTT
193 CGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
16140292 ATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
258 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
16140356 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
323 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* *
16140421 AAAATCTTGTACACTTCGAGTTCTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
388 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGAT
* *
16140486 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAGAATTTTAAAAAATCCTGAACCGTAAA
453 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAA
*
16140551 AAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
518 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
**
16140616 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATTTCATTGGCATGCAGAAATATGAAGATGT
583 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
* ** * *
16140681 GCCTAAACCCGCCTACCACCCTATCGATCCATAGCTTGCGCATCCCGTCTCTTTGGCCGGTGTAG
648 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
* * ** * *
16140746 TTCCCGCCCGCCCGCCCACCCGTTCGCTTCGTCCATTGGCTTTGGCATATGGAGTTCATTCCCAG
713 -T-------GCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
** * * * * *
16140811 TCTAAGATCAGACCAAACCGAGGGTTGCGGCAGCAGGATCAGCAGCACGCAGAAGGGGACCCAAT
770 TCTAAGATCAGACCGGA-TGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGAT
* * * *
16140876 CGATCCCTGGCTTGCGCATCCTGCCCCTCTGGCTGGCTGAGAGCCCGCACGCTCGTTTCAT
834 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCAT
* * *
16140937 GGGTTAACTTAGGCATATGGAGTTCATTCCTAGTCTAAG-AT-C---G---A-----A--C----
1 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAG
* * * * * *
16140983 --C--A--A-ACCGAGGGTTACGGCAGCACATGCTAGGCGCGGCCATGTGCTGGTGCTGCATTTT
66 ATCGGACCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT
* * * * *
16141041 TCTTCGTTGGGGCACCATCGCCGGAGCATCATCGGAGAACCTGACCGACGGCATTAGGGTTCCGA
131 TCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGG
* *
16141106 CGATC-GGGGTGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCATTATA
196 CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
*
16141170 TTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
261 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* *
16141235 CAGGTTTGCTCCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAA
326 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * * *
16141300 ATCTTGTACACTTCGAGTTCTTAGCTGAA-TTTTTTATGCATGCCAACAAAAATATAAGGATCAC
391 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAC
*
16141364 GTCTACGAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG
456 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG
* *
16141429 TTTCAAAAATCATGAAAAAGAGAAAACGAGTCGTCTTGACATGAAACTTCACGTGAAGGCTTAAG
521 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
*** *
16141494 GGACC---------A-TT----GCCATAAAAATGGCATTGGCACATAGAAATATAAAGATGTGCC
586 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC
* * *
16141545 TAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCTGGGGTAGTGC
651 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC
* * * * *
16141610 CCGTCCGTCCGCCCTTTCGCTCGTGTCGTCGGTTGGCTTAGGCATACGTAGTTCATTTCCAGACT
716 CCG--C--CC-ACC---CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
** * * * * * * *
16141675 AAGATTGGACTGGATTGAGGGTTGCAGCAGCAGGATCGGTAGCATGCAAAGGGGGACCC-AGCCG
773 AAGATCAGACCGGA-TGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-TCG
* * * * *
16141739 ATCCCCAGCTTGCGCATCCTGCCCCTCTTGCCGGCTAAGCGCCCGCACGCTCGTTTCGT
836 ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCAT
* * *
16141798 GGTTTGACTTAGGCATACGGAGTTCATTCCCAATCTAATCATAC-AGAGTTCATTCCCAGTCTAA
1 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA-AGTTCATTCCCAGTCTAA
* * * * ** *
16141862 GATCAGACCAGACTGAGGGTTACGGTGGCACATGTTGGGCTCGGGCATGTGCTGGTGCCTGCATT
65 GATCGGACCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC-GCATT
** ** * * *
16141927 TTTCTTCGTCGGGGCACCATTATCGGAGCATCGTCGGAGAACTTGACTGACGGCATTGGGGTTTC
129 TTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCC
* *
16141992 GGCGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTAGCCCTTA
194 GGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
* *
16142057 TATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGTATTTGAGATTT
259 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* *
16142122 TACAAGTTTGCTGCCAGTAGCCATTAAAGTGCCTGAAATGGGGACACTTTTTTCAAATGGTCACA
324 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
16142187 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATC
389 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATC
* * * * **
16142252 ACGTCTACCATGTTTGGGGCCAAAACTCCTACCGAAAATATTTAAAAAAATCTTGAACCGTAAAA
454 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAA
* *
16142317 AGTTTTAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
519 AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
* *
16142382 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTG
584 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTG
16142447 CCTAAACCCACCTACCACCCTATCGATCCACG
649 CCTAAACCCACCTACCACCCTATCGATCCACG
16142479 TTGTCACGGA
Statistics
Matches: 4496, Mismatches: 501, Indels: 241
0.86 0.10 0.05
Matches are distributed among these distances:
853 5 0.00
855 1 0.00
857 2 0.00
858 2 0.00
860 2 0.00
861 263 0.06
862 2 0.00
863 1 0.00
865 2 0.00
866 2 0.00
869 1 0.00
873 531 0.12
874 83 0.02
875 292 0.06
876 152 0.03
877 171 0.04
878 4 0.00
879 2 0.00
880 4 0.00
881 7 0.00
882 1 0.00
883 1 0.00
884 1 0.00
885 1 0.00
886 3 0.00
887 41 0.01
888 66 0.01
889 213 0.05
890 156 0.03
892 3 0.00
893 2 0.00
894 75 0.02
895 233 0.05
896 159 0.04
897 96 0.02
898 215 0.05
899 167 0.04
900 406 0.09
901 150 0.03
902 200 0.04
903 231 0.05
904 86 0.02
905 461 0.10
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (894 bp):
GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAG
ATCGGACCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT
TCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGG
CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAC
GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG
TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC
TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC
CCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
ACCGGATGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCT
TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCAT
Found at i:16140079 original size:26 final size:26
Alignment explanation
Indices: 16140049--16140101 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16140039 GTTAACTTAG
*
16140049 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGAAGTTCATTCACAGTCTAA
*
16140075 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCACAGTCTAA
16140101 G
1 G
16140102 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCACAGTCTAA
Found at i:16141847 original size:26 final size:26
Alignment explanation
Indices: 16141811--16141861 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16141801 TTGACTTAGG
*
16141811 CATACGGAGTTCATTCCCAATCTAAT
1 CATACAGAGTTCATTCCCAATCTAAT
*
16141837 CATACAGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATTCCCAATCTAA
16141862 GATCAGACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.27, G:0.12, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAATCTAAT
Found at i:16150166 original size:26 final size:26
Alignment explanation
Indices: 16150130--16150182 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16150120 GTTAACTTAG
* *
16150130 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
16150156 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
16150182 G
1 G
16150183 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:16150500 original size:900 final size:892
Alignment explanation
Indices: 16149254--16151491 Score: 3171
Period size: 875 Copynumber: 2.5 Consensus size: 892
16149244 GTTAACTTAG
* * *
16149254 GCATACGGAGTTCATTCCTAGTCCAAGATCAGATCGGATCAAGGGTTGCGGCAGCACATACTGGG
1 GCATACGGAGTTCATTCC-A-T-CAAGATC-GA-CGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
16149319 CTCGGGCATGTGCTGGTGGCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
61 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* ** * **
16149384 ACCAGACCGGCGATATTGGGGTTCCGGCGA-TCGGGGGGGTTAGGGGGTGTGCGCACATGATGTG
126 ACCTGACCGGCGGCATTGGGGTTCCGGCGATTAGGGGCCG---GGGGGTGTGCGCACATGATGTG
* *
16149448 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAT
188 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
16149513 ACCCCTTTAAAGAGCATTTGAGATTTGACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAT
253 ACCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
16149578 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGATTTTTTAGCTGAATTTTTTTA
317 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
* *
16149643 TGCATGCC-AAAAAAATACAAGGATCACGTCTTCCAAGTTTGGGGCCAAAATTCCTTCC-AAAAA
382 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAA
* *
16149706 ATTTTTACAAAATCCCGAACTGTAAAAAGTTTCAAAAATCCTGAAAAATAGAAAACGAGTCATCA
447 ATTTTTA-AAAATCCCGAACCGCAAAAAGTTTCAAAAATCCTGAAAAATAGAAAACGAGTCATCA
*
16149771 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
511 TACCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
16149836 ATTGGCATGCAGATATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATAGCTTGC
576 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTAC
* *
16149901 GCATCCAGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGCCC-ACCTGCTCATTTCGTCAGTTG
641 GCAACCAGTCTCTCTGGCCGACGTA---CCCACCCGCCCGCCCGACC-GCTCATTTCCTCAGTTG
* * *
16149965 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGATAGCAGGA
702 GCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGATAGCAGGA
* *
16150030 TCGACAGCACGCAAAGGAGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCGGCT
767 TCGACAGCACGCAAAGGAGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCGGCG
16150095 GAGCACCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCTAGTCTAA
832 GAGCACCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCTAGTCTAA
* **
16150156 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGTGAAAGCACATGCTGGG
1 GCATACGGAGTTCATT-CC-ATC-AAGATC-GA-CGGACCGAGGGTTGCGGCAGCACATGCTGGG
** * *
16150221 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCAGAGCATCGCCGGAGA
61 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
*
16150286 ACCTGACCGGCGGCATTGGGGTTCCGACGATTAGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
126 ACCTGACCGGCGGCATTGGGGTTCCGGCGATTAGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
*
16150351 TGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
191 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
16150416 TCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
256 -CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* *
16150481 GACACTTTTTTGAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
320 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGC
* *
16150546 ATGCCAAAAAAAATACAAGGATCACGTCTACCAACTTTGGGGCCAAAAATCATTCCGAAAAAATT
385 ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATT
* * * *
16150611 TTTAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTACC
450 TTTAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCCTGAAAAATAGAAAACGAGTCATCATACC
*
16150676 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
515 ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* *
16150741 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGTAA
580 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTACGCAA
* * * * * * **
16150806 CCCGTCTCTCTGGCTGGCGTACCCGCCCGCCCGCCCGGCCGCTCGTTTCCTTGGTTGGCTTAGGC
645 CCAGTCTCTCTGGCCGACGTACCCACCCGCCCGCCCGACCGCTCATTTCCTCAGTTGGCTTAGGC
* * * * *
16150871 ATACATAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGTAGGATCGACAGC
710 ATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGATAGCAGGATCGACAGC
* * * * * **
16150936 ACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATTCCGCCCCTCTGGCCGGCGGAGTGCCC
775 ACGCAAAGGAGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCGGCGGAGCACCC
* * *
16151001 GTACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCTAGTCTAA
840 GCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCTAGTCTAA
* **
16151054 G-AT-C---G-------------GAT---CGGACCGAGGGTTGCGGCAGCACATGCTAGGCTCAA
1 GCATACGGAGTTCATTCCATCAAGATCGACGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGG
**
16151098 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTG
66 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTG
* ** ** * ***
16151163 ACCGGTGGCATTGGGGTTCCGGTAATCGGGGGGGCCGGGGTGGTGTGCGCAAATGATGTTTAATG
131 ACCGGCGGCATTGGGGTTCCGGCGAT--TAGGGGCCGGGG-GGTGTGCGCACATGATGTGCGATG
*
16151228 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCTTCAAACCTCGAGAACTCACACCCC
193 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCC
* * * * * *
16151293 CTTAGAGAGCATTTGAGATTTTACAGGTATT-TTGCCAGTTGCCATTAAAGTGTATAAAATGGAG
257 CTTAAAGAGCATTTGAGATTTTACAGGT-TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
*
16151357 ATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCA
321 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCA
* *
16151422 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCGAAAAAA-TT
386 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTT
16151486 TTAAAA
451 TTAAAA
16151492 TGGGAACACT
Statistics
Matches: 1209, Mismatches: 115, Indels: 52
0.88 0.08 0.04
Matches are distributed among these distances:
872 111 0.09
874 18 0.01
875 255 0.21
876 4 0.00
877 3 0.00
893 1 0.00
896 1 0.00
897 2 0.00
898 199 0.16
899 2 0.00
900 213 0.18
901 244 0.20
902 147 0.12
903 9 0.01
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (892 bp):
GCATACGGAGTTCATTCCATCAAGATCGACGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGG
GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTG
ACCGGCGGCATTGGGGTTCCGGCGATTAGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCA
AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTTAAA
AATCCCGAACCGCAAAAAGTTTCAAAAATCCTGAAAAATAGAAAACGAGTCATCATACCATGAAA
CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTACGCAACCAGTC
TCTCTGGCCGACGTACCCACCCGCCCGCCCGACCGCTCATTTCCTCAGTTGGCTTAGGCATACAG
AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGATAGCAGGATCGACAGCACGCAA
AGGAGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCGGCGGAGCACCCGCACGC
TCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCTAGTCTAA
Found at i:16151429 original size:875 final size:874
Alignment explanation
Indices: 16148209--16151491 Score: 4530
Period size: 868 Copynumber: 3.7 Consensus size: 874
16148199 CGTCCACTCG
* * * * * **
16148209 TTTCGTCGGTTGGCTCAGGCATACAAAGTTTATTCCCAGTCTAAGATCGGACCGGACTAAGGGTT
1 TTTCGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTT
* * * * * *
16148274 GTGGCAGCAGGATTGGCAGCACACAGAGGGGGACCCGATCGATCCCCTGCTTGCACATTCCGCCC
66 GCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATTCCGCCC
* * *
16148339 CTCTGGCCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAAACGGAGTTCATTCC
131 CTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCC
* * * *
16148404 CAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTG-TCGAT
196 TAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCT-GGT
* * * *
16148468 GCTGCATTTTTCTTCATCAGGGCACCATCGTCAGAGCATCACCGGAGAACCTGACCGACGGTATT
260 GCCGCATTTTTCTTCATCGGGGCACCATCGTCAGAGCATCACCGGAGAACCTGACCGGCGGCATT
* *
16148533 GGGGTTTCGACGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
325 GGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* *
16148598 GGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTCACA-CCCCTTAAAGAGCATT
390 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
*
16148662 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGGGACACTTTTTTCAAA
455 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* * * * *
16148727 TGGTCACAAAATCTTGTACACTTTGAGTTTTTAGTTGAATTGTTTTGTGCATGCCAACAAAAATA
520 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATA
* * **
16148792 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTTCGAAAAAATTTAAAAAAAT-CTCGA
585 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTTAAAAATCCT-GA
* * * * *
16148856 ACGGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGGGCCGTCTTGCTATGAAACTTCACGT
649 ACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* ***
16148921 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCACATAGAAATAT
714 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATAT
* * * * *
16148986 GAAGATGTACCTAAACCCACCTACCACCCTGTAGATCCATGGCTTGCGCATCCGGTCTCTTTGGC
779 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCAGTCTCTCTGGC
* * * *
16149051 CAGCGTA---G--TGCCCGCCCGCCCGTTCA
844 CGGCGTACCCGCCCGCCCGCCCGACCGCTCA
* *
16149077 TTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTT
1 TTTCGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTT
* * * * * * *
16149142 GCAGCAGTAGGATCGGCAGCATGCAGAGGGGTACCCGATCGATTCCTGGCTTGCGCA-TCTCGCC
66 GCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATTC-CGCC
*
16149206 CCTCTGGCCGGTTGAG-AGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATT
130 CCTCTGGCCGGCTGAGCA-CCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATT
* * * * *
16149270 CCTAGTCCAAGATCAGATCGGATCAAGGGTTGCGGCAGCACATACTGGGCTCGGGCATGTGCTGG
194 CCTAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGG
* * * * * * **
16149335 TGGCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCAGACCGGCGATAT
259 TGCCGCATTTTTCTTCATCGGGGCACCATCGTCAGAGCATCACCGGAGAACCTGACCGGCGGCAT
* ***
16149400 TGGGGTTCCGGCGATCGGGGGGGTTAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
324 TGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* * *
16149465 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCATACCCCTTTAAAGAGCAT
389 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* *
16149530 TTGAGATTTGACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
454 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* *
16149595 ATGGTCACAAAATCTTGTACACTTTGATTTTTTAGCTGAATTTTTTTATGCATGCC-AAAAAAAT
519 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAAT
* * *
16149659 ACAAGGATCACGTCTTCCAAGTTTGGGGCCAAAATTCCTTCC-AAAAAATTTTTACAAAATCCCG
584 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTTA-AAAATCCTG
* * * * * *
16149723 AACTGTAAAAAGTTTCAAAAATCCTGAAAAATAGAAAACGAGTCATCATGCCATGAAACTTCACA
648 AACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
*
16149788 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGATATA
713 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
*
16149853 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATAGCTTGCGCATCCAGTCTCTCTGG
778 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCAGTCTCTCTGG
* *
16149918 CCGACGTAGTGCCCACCCGCCCGCCC-ACCTGCTCA
843 CCGGCGTA---CCCGCCCGCCCGCCCGACC-GCTCA
* * *
16149953 TTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTT
1 TTTCGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTT
* ** * * ** *
16150018 ACGATAGCAGGATCGACAGCACGCAAAGGAGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCC
66 GCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATTCCGCCC
*
16150083 CTCTAGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCC
131 CTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCC
* *
16150148 TAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGTGAAAGCAC
196 TAG--T---C-TA---AG----------ATC--AGAT-----CGGACCGAGGGTTGCGACAGCAC
* *
16150213 ATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCAGAGCATC
235 ATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCAGAGCATC
* **
16150278 GCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGAT--TAGGGGCCGGGGGGTGTGCGCACA
300 ACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACA
*
16150341 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCGAG
365 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
*
16150406 AACTCACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
430 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
*
16150471 CTGAAATGGGGACACTTTTTTGAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
495 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * * *
16150536 TTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAACTTTGGGGCCAAAAATCATTC
560 TTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
16150601 CGAAAAAATTTTTAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
625 CGAAAAAATTTTTAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
*
16150666 TCGTCTTACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
690 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
*
16150731 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
755 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATG
* * * * * * *
16150796 GCTTACGTAACCCGTCTCTCTGGCTGGCGTACCCGCCCGCCCGCCCGGCCGCTCG
820 GCTTGCGCATCCAGTCTCTCTGGCCGGCGTACCCGCCCGCCCGCCCGACCGCTCA
* ** * *
16150851 TTTCCTTGGTTGGCTTAGGCATACATAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTT
1 TTTCGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTT
* *
16150916 GCGGTAGTAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATTCCGCCC
66 GCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATTCCGCCC
* ** * * *
16150981 CTCTGGCCGGCGGAGTGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCC
131 CTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCC
* * * **
16151046 TAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTAGGCTCAAGCATGTGCTGGTG
196 TAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * * *
16151111 CCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGGTGGCATTG
261 CCGCATTTTTCTTCATCGGGGCACCATCGTCAGAGCATCACCGGAGAACCTGACCGGCGGCATTG
*** * ***
16151176 GGGTTCCGGTAATCGGGGGGGCCGGGGTGGTGTGCGCAAATGATGTTTAATGGGTGCTGGTACTT
326 GGGTTCCGACGATCGGGGGGGCCGGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* *
16151241 GGCCCTTATATTGGCCCCCTATCCCTCTTCAAACCTCGAGAACTCACACCCCCTTAGAGAGCATT
390 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* * * * * *
16151306 TGAGATTTTACAGGTATT-TTGCCAGTTGCCATTAAAGTGTATAAAATGGAGATACTTTTTTCAA
455 TGAGATTTTACAGGT-TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
16151370 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAAT
519 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAAT
*
16151435 ACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCGAAAAAA-TTTTAAAA
584 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTTAAAA
16151492 TGGGAACACT
Statistics
Matches: 2134, Mismatches: 231, Indels: 94
0.87 0.09 0.04
Matches are distributed among these distances:
867 13 0.01
868 612 0.29
869 130 0.06
872 111 0.05
874 18 0.01
875 259 0.12
876 188 0.09
877 5 0.00
878 1 0.00
879 3 0.00
881 1 0.00
882 1 0.00
885 2 0.00
889 2 0.00
892 2 0.00
893 1 0.00
895 3 0.00
896 1 0.00
897 4 0.00
898 193 0.09
899 2 0.00
900 218 0.10
901 241 0.11
902 123 0.06
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (874 bp):
TTTCGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTT
GCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATTCCGCCC
CTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCC
TAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTG
CCGCATTTTTCTTCATCGGGGCACCATCGTCAGAGCATCACCGGAGAACCTGACCGGCGGCATTG
GGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATAC
AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTTAAAAATCCTGAAC
CGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
AGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCAGTCTCTCTGGCCG
GCGTACCCGCCCGCCCGCCCGACCGCTCA
Found at i:16152746 original size:26 final size:26
Alignment explanation
Indices: 16152707--16152763 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
16152697 TGGGTTGACT
*
16152707 TAAGAATACGGAGTTCATTCCTAGTC
1 TAAGAATACAGAGTTCATTCCTAGTC
*
16152733 TAAGCATACAGAGTTCATTCCTAGTC
1 TAAGAATACAGAGTTCATTCCTAGTC
16152759 TAAGA
1 TAAGA
16152764 TCGGATCGGA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30
Consensus pattern (26 bp):
TAAGAATACAGAGTTCATTCCTAGTC
Found at i:16153531 original size:26 final size:26
Alignment explanation
Indices: 16153463--16153529 Score: 107
Period size: 26 Copynumber: 2.5 Consensus size: 26
16153453 CTCCTTCCAA
*
16153463 AAAAATTTTAAAAAATCTCGAACCGT
1 AAAAATTTTAAAAAATCCCGAACCGT
16153489 AAAAATTTTAAAAAATCCCGAACCGT
1 AAAAATTTTAAAAAATCCCGAACCGT
*
16153515 AAAAAGTTTTGAAAA
1 AAAAA-TTTTAAAAA
16153530 TCATGAAAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
26 30 0.79
27 8 0.21
ACGTcount: A:0.52, C:0.13, G:0.09, T:0.25
Consensus pattern (26 bp):
AAAAATTTTAAAAAATCCCGAACCGT
Found at i:16156159 original size:687 final size:689
Alignment explanation
Indices: 16154846--16156219 Score: 2000
Period size: 687 Copynumber: 2.0 Consensus size: 689
16154836 CAGACCGAAG
* * *
16154846 CGAGGGTTGCGACAGCACATGCTGGGCTTAGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGG
1 CGAGGGTTGCGACAGCACATGCTAGGCTTAGGCATGTGCTGGCGCCACATTTTTCTTCCTCGGGG
* * *
16154911 CACCATCATTGGAGCATCGCCGGAGAACCTGACCGGCTGCATTGAGGTTCAAGCGATCGGGGCGG
66 CACCATCATCGGAGCATCGCCAGAGAACCTGACCGGCAGCATTGAGGTTCAAGCGATCGGGGCGG
*
16154976 CCGGGGGGTGTGCACACATGATGTACGATGGCTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
131 CCGGGGGCTGTGCACACATGATGTACGATGGCTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
16155041 CCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGTAATTGAGATTTTACAGGTTTGCTGCC
196 CCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCAATTAAGATTTTACAGGTTTGCTGCC
16155106 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTCTTTCAAATGGTCACAAAATCTTGTACACTT
261 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTCTTTCAAATGGTCACAAAATCTTGTACACTT
* * ** * *
16155171 CGAGTTTTTAGTTGAAATGTTTTGTGGATGCCAACAAAAATACAAGGATCGTGTCTACCAAGTTT
326 CGAGTTTTTAGCTGAAATGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAACAAGTTC
* * * * *
16155236 GGGGCCAAAACTCCTTACGAAAACATTGTCAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGT
391 AGGGCCAAAAATCCTTACGAAAACATTGTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCAT
* *
16155301 GAAAAATAGAAAATGAGTCGCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
456 GAAAAATAGAAAACGAGTCGCTTGCCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
*
16155366 ATTTACAAGCCATAAAAATGGTATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACC
521 ATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * * * * *
16155431 ACCTTATCGATCCAGGGCTTGCGCATCTCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCA-T-
586 ACCTTATCAATCCACGACTTGCGCATCTCGCCCCTCTGGCCGACGTACTGCCCGCCCGC-CACTC
* *
16155494 T-TTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCGGAT
650 TATCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCGGAT
** *
16155533 CGAGGGTTGCGGTAGCACATGCTAGGCTTGGGCATGTGCTGGCGCCACATTTTTCTTCACT-GGG
1 CGAGGGTTGCGACAGCACATGCTAGGCTTAGGCATGTGCTGGCGCCACATTTTTCTTC-CTCGGG
* * * *
16155597 GCACCATCGTCGGAGCATCGCCAGTGAACCTGACCGGCAGCATTGGGGTTC-CGACGATC-GGG-
65 GCACCATCATCGGAGCATCGCCAGAGAACCTGACCGGCAGCATTGAGGTTCAAG-CGATCGGGGC
* * *
16155659 GGCCGGGGGCTGTGCGCACATGATGTGCGAT-GCGTGCTGGTACTTGGCCCTTATATTGGTCCCC
129 GGCCGGGGGCTGTGCACACATGATGTACGATGGC-TGCTGGTACTTGGCCCTTATATTGGCCCCC
* * * *
16155723 TATCCCTCATCAAGCCTTGAGAACTCACGCCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGC
193 TATCCCTCATCAAACCTCGAGAACTCAC-ACCCCTTAAAGAGCAATTAAGATTTTACAGGTTTGC
* * * *
16155788 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGATACTTTTTTGAAATGGTCACAAAATTTTGTAC
257 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTCTTTCAAATGGTCACAAAATCTTGTAC
* * * * *
16155853 ACTTC-ATGTTTTTGGCTGAATTTTTTTGTGCATGTCAACAAAAATACATGGATCACGTC-AACA
322 ACTTCGA-GTTTTTAGCTGAAATGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAACA
* * *
16155916 ATGTTCAGGGCCAAAAATGCTGTCCGAAAA-ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAA
386 A-GTTCAGGGCCAAAAATCCT-TACGAAAACATTGTAAAAAATCCCGAACCGTAAAAAGTTTCAA
* *
16155980 AAATCATGAAAAATAGAAAACGAGTCATCTTGCCACGAAACTTCACGTGAAGGCTTTAGGGACCA
449 AAATCATGAAAAATAGAAAACGAGTC-GCTTGCCACGAAACTTCACGTGAAGGCTTAAGGGACCA
16156045 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACC
513 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACC
16156110 CACCTACCA-CTCTATCAATCCACGACTTGCGCATC-CTGCCCCTCTGGCCGACGTACTGCCCGC
578 CACCTACCACCT-TATCAATCCACGACTTGCGCATCTC-GCCCCTCTGGCCGACGTACTGCCCGC
16156173 CCGCCAGCTCGTATCGTCGGTTGGCTTAGGCATACAGAGTTCATTCC
641 CCGCCA-CTC-TATCGTCGGTTGGCTTAGGCATACAGAGTTCATTCC
16156220 CAGTCTAAGA
Statistics
Matches: 612, Mismatches: 60, Indels: 26
0.88 0.09 0.04
Matches are distributed among these distances:
684 2 0.00
685 88 0.14
686 220 0.36
687 267 0.44
688 2 0.00
690 1 0.00
691 32 0.05
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (689 bp):
CGAGGGTTGCGACAGCACATGCTAGGCTTAGGCATGTGCTGGCGCCACATTTTTCTTCCTCGGGG
CACCATCATCGGAGCATCGCCAGAGAACCTGACCGGCAGCATTGAGGTTCAAGCGATCGGGGCGG
CCGGGGGCTGTGCACACATGATGTACGATGGCTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
CCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCAATTAAGATTTTACAGGTTTGCTGCC
AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTCTTTCAAATGGTCACAAAATCTTGTACACTT
CGAGTTTTTAGCTGAAATGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAACAAGTTC
AGGGCCAAAAATCCTTACGAAAACATTGTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCAT
GAAAAATAGAAAACGAGTCGCTTGCCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
ATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACC
ACCTTATCAATCCACGACTTGCGCATCTCGCCCCTCTGGCCGACGTACTGCCCGCCCGCCACTCT
ATCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCGGAT
Found at i:16157291 original size:26 final size:26
Alignment explanation
Indices: 16157255--16157307 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16157245 GTTAACTTAG
*
16157255 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACAGAGTTCACTCCCAGTCTAA
*
16157281 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCACTCCCAGTCTAA
16157307 G
1 G
16157308 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCACTCCCAGTCTAA
Found at i:16158157 original size:879 final size:877
Alignment explanation
Indices: 16155636--16159349 Score: 4673
Period size: 885 Copynumber: 4.2 Consensus size: 877
16155626 CTGACCGGCA
* *
16155636 GCATTGGGGTTCCGACGATC--GGGGGCCGGGGGCTGTGCGCACATGATGTGCGATGCGTGCTGG
1 GCATTGGGGTTCCGACGATCGGGGGGGCCGGGGG--GTGTGCACATGATGTGCGATGGGTGCTGG
* * *
16155699 TACTTGGCCCTTATATTGGTCC-CCTATCCCTCATCAAGCCTTGAGAACTCACGCCCCCTTAAAG
64 TACTTGGCCCTTATATTGG-CCTCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* *
16155763 AGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGATACTTTT
128 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * * *
16155828 TTGAAATGGTCACAAAATTTTGTACACTTC-ATGTTTTTGGCTGAATTTTTTTGTGCATGTCAAC
193 TTCAAATGGTCACAAAATCTTGTACACTTCGA-GTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* *
16155892 AAAAATACATGGATCACGTCAACAATGTTCAGGGCCAAAAATGCTGTCCG-AAAAATTTTAAAAA
257 AAAAATACAAGGATCACGTCAACAATGTTCAGGGCCAAAAATGCTTTCCGAAAAAATTTTAAAAA
16155956 ATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCACGAAAC
322 ATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCACGAAAC
* *
16156021 TTCACGTGAAGGCTTTAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTA
387 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTA
*
16156086 GAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCAATCCACGACTTGCGCATCCTGCCC
452 GAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCAATCCACGACTTGCGCATCCCGCCC
16156151 CTCTGGCCGACGTACTGCCCGCCCGCCAGCTCGTATCGTCGGTTGGCTTAGGCATACAGAGTTCA
517 CTCTGGCCGACGTACTGCCCGCCCGCCAGCTCGTATCGTCGGTTGGCTTAGGCATACAGAGTTCA
* * * * * *
16156216 TTCCCAGTCTAAGATCAAACCAGATCGAGTTTTTTGGTAGCAGGATCAGAAGCACGCAGAGGGGG
582 TTCCCAGTCTAAGATCAAACCAGACCGAGTGTTTCGGCAGCAGGATCGGCAGCACGCAGAGGGGG
* * *
16156281 ACCCAACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGTCGACTGAGCGCCTGCACGCTCATTT
647 ACCCAGCCGATCCCCAGCTTACGCATCCCGCCCCTCTGGCCGACTGAGCGCCTGCACGCTCATTT
* *
16156346 CATGGCCCGAGTTAGGCATACGGAGTTCACTCCCAGTCTAAGCATACAAAGTTCATTCCCAGTCT
712 CATGGCCCGACTTAGGCATACGGAGTTCACTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCT
* * *
16156411 AAGATCAGATCGGACCGAGGGTTGCGGCTGCACATGCTGGGCTCAGGCATGTGCTGGTGTC-GCA
777 AAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTGCTGGTG-CAGCA
** * * *
16156475 TTTTTCTTCACCGAGGAACCA-TCACCGAATAACCTGAACG
841 TTTTTCTTCGTCGAGG-ACCACCCACCG---GACCTGGACG
* *
16156515 GCGGAATTGGGGTTCCGACGATCGGGGGGCCACTGGCGGGGTGTGCACATGATGTGCGATGGATG
1 GC---ATTGGGGTTCCGACGATCGGGGGGGC-C-GG-GGGGTGTGCACATGATGTGCGATGGGTG
* *
16156580 CTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTGGAGAACTCACACCCCTTTA
60 CTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * * *
16156645 AAGAGCATTTTATATTTTACAGGTTTGTTGCCAGTAGACATTAAAGTGAT-TGAAATGGGGACAC
125 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG-TCTGAAATGGGGACAC
* * *
16156709 TTTTTTCAAATAGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAGTTTTTTTGTGCATGCC
189 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * ** * * * *
16156774 AATAAAAATACAAGGATCACGTCTACCAA-GTTTGGGGCCAAAAAT-CCTTCCAAAAAAAATTAA
254 AACAAAAATACAAGGATCACGTC-AACAATGTTCAGGGCCAAAAATGCTTTCCGAAAAAATTTTA
* * *
16156837 AAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATG
318 AAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCACG
* * * *
16156902 AAACTTCACGTGATGGCTTAAAGGACCGTTGTATGAATTTACAAACCATAAAAATGGCATTGGCA
383 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
** * * * * *
16156967 CACAAAATATATGAAGATGTGCCTAAAGCCACCTACCACCCTATCGATCCATGACTTGCGCATCC
448 CGTAGAA-ATATGAAGATGTGCCTAAACCCACCTACCACTCTATCAATCCACGACTTGCGCATCC
* * * *
16157032 CGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCAGCTCGTTTCGTCGGTTGGCTTAGG
512 CGCCCCTCTGGCCGACGTA--------CTGCCCGCCCGCCAGCTCGTATCGTCGGTTGGCTTAGG
* * *
16157097 CATACAGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGTGTTTCGGCAGTAGGATCGGCAG
569 CATACAGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGTGTTTCGGCAGCAGGATCGGCAG
* * *
16157162 CACGTAGAGGGGGACCC-GACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGA-TAGAGTG
634 CACGCAGAGGGGGACCCAG-CCGATCCCCAGCTTACGCATCCCGCCCCTCTGGCCGACT-GAGCG
* * ****
16157225 CCTGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCACTCCCAGTCTAAGCATACAGA
697 CCTGCACGCTCATTTCATGGCCCGACTTAGGCATACGGAGTTCACTCCCAGTCTAAGCATACAGA
* * * * *
16157290 GTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGACAGCACATGCTAGGCTCGGGCAA
762 GTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCAGGCAT
** * *
16157355 GTGCTGGT-CAATTACTTTTCTTCGTCG-GG-GCA-CCACC-G-CC-GGACG
827 GTGCTGGTGC-AGCATTTTTCTTCGTCGAGGACCACCCACCGGACCTGGACG
*
16157400 GCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCATACATGATGTGTGATGGGTGCTGG
1 GCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGC--ACATGATGTGCGATGGGTGCTGG
* * *
16157465 TACTTGGCCCTTATATTGGCCACCTATCCCTCATCAAACCTCGAAAACTCACACCCCTTTAAAGA
64 TACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
*
16157530 GCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTT
129 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
*
16157594 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
194 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* ** * * * *
16157659 AAATACAAGGATCACGTCTACCAA-GTTTGGGGCCAACACT-CTTTCTGAAGAAATTTTAAAAAA
259 AAATACAAGGATCACGTC-AACAATGTTCAGGGCCAAAAATGCTTTCCGAAAAAATTTTAAAAAA
*** * * * ** * *
16157722 TCTTAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTGGTCTTGCCATGAAAGT
323 TCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCACGAAACT
*
16157787 TCACGTGAAGGCTTAAGGGACTATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAG
388 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAG
* * * * *
16157852 AAATATGAAGATGTGCCTAAACCCACCTACCACTTTATCGATGCACGACTTGCGCATCCCGTCTC
453 AAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCAATCCACGACTTGCGCATCCCGCCCC
* * * * * *
16157917 TCTGGCCGGCGTAATGCCCACCCGCCCGCCTGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACG
518 TCTGGCCGACGTACTG----CCCG--C-CC-GCCAGCTCGTATCGTCGGTTGGCTTAGGCATACA
* * * * * * *
16157982 GAGTTCATTCGCAATCTAAGATTC-GACC-GAACCGAGGGTTGCGGCAACAGGATCGGTAGCACG
575 GAGTTCATTCCCAGTCTAAGA-TCAAACCAG-ACCGAGTGTTTCGGCAGCAGGATCGGCAGCACG
* * ** * * ***
16158045 CAGAGGGGGAGCCAGCTGATTGCCGGCTTACGCATCCTGCCCCTCTGGCCGACTGAGCGCCCATA
638 CAGAGGGGGACCCAGCCGATCCCCAGCTTACGCATCCCGCCCCTCTGGCCGACTGAGCGCCTGCA
* * *** * * *
16158110 CGTTCATTTCGTGGTTTGACTTAGGCATACGGAGTTCATTACCAGTCTAAGCATACAGAATTCAT
703 CGCTCATTTCATGGCCCGACTTAGGCATACGGAGTTCACTCCCAGTCTAAGCATACAGAGTTCAT
* * *
16158175 TCCCAGTCTAAGATCGGAGCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTGCTG
768 TCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTGCTG
* * *
16158240 GTGCCA-CATTTTTCTTCGTCGGGGCACCA-TCACCGGAGATCCTGACCGACA
833 GTG-CAGCATTTTTCTTCGTCGAGG-ACCACCCACC-G-GA-CCTG---GACG
* * ** * ** * *
16158291 GAATTAGGGTTTTGGCGATCAAGGGGGCCGGGGGGTGTGCGCACATGATGTGCTATTGGTGCTGG
1 GCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGT--GCACATGATGTGCGATGGGTGCTGG
* *
16158356 TACTTGGCCCTTATATTGGCCTCCTAACCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGA
64 TACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* *
16158421 GTATTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACACTTTT
129 GCA-TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * * *
16158486 TTGAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTGGTTGAATTTTTTTGTGCATGCCAACA
193 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
16158551 AAAATACAAGGATCACGTCAACAATGTTCAGGGCCAAAAATGCTTTCC-AAAAAATTTTAAAAAA
258 AAAATACAAGGATCACGTCAACAATGTTCAGGGCCAAAAATGCTTTCCGAAAAAATTTTAAAAAA
16158615 TCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCACGAAACT
323 TCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCACGAAACT
* *
16158680 TCACGTGAAGGCTTTAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAG
388 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAG
* *
16158745 AAATATGAAGATGTGCCTAAACCC-CCTACCACTCTATCAATCCACGACTTACGCATCCTGCCCC
453 AAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCAATCCACGACTTGCGCATCCCGCCCC
16158809 TCTGGCCGACGTACTGCCCGCCCGCCAGCTCGTATCGTCGGTTGGCTTAGGCATACAGAGTTCAT
518 TCTGGCCGACGTACTGCCCGCCCGCCAGCTCGTATCGTCGGTTGGCTTAGGCATACAGAGTTCAT
* * ** * **
16158874 TCCCAGTCTAAGATCAAACCAGACTGAGTTTTTCGATAGCAGGATTGGCAGCACATAGAGGGGGA
583 TCCCAGTCTAAGATCAAACCAGACCGAGTGTTTCGGCAGCAGGATCGGCAGCACGCAGAGGGGGA
** ** * * * ** **
16158939 CCCAATCGATCCCCAGCTTGTGCAGCCCACCCCTCTGGTCGGTTGAGCGCCTGCACGCTTGTTTC
648 CCCAGCCGATCCCCAGCTTACGCATCCCGCCCCTCTGGCCGACTGAGCGCCTGCACGCTCATTTC
* * * *
16159004 ATGGCCCGAGTTAGGCATACGGAGTTCACTCCCAATCTAAGCATACGGAGTTCATTCCCAATCTA
713 ATGGCCCGACTTAGGCATACGGAGTTCACTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTA
* * ** * * *
16159069 AGATCGGATCGGGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTAT
778 AGATCAGA-CCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTGCTGGTGCAGCAT
* *
16159134 TTTTCTTC-ACGAGGAACCATCGCCGAAGAACCTGACC-GG-CG
842 TTTTCTTCGTCGAGG-ACCA-C-CC-----ACCGGACCTGGACG
* ** *
16159175 GCATTGGGGTTTCGACTTTCGGGGGGCCACTGGCGGGGTGTGCACATGATGTGCGATGGGTGCTG
1 GCATTGGGGTTCCGACGATCGGGGGGGC-C-GG-GGGGTGTGCACATGATGTGCGATGGGTGCTG
16159240 GTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
63 GTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * *
16159305 AGCATTTGAGATTTTATAGGTTTGTTGCCAGTAGACATTAAAGTG
128 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
16159350 ATTGTTACCG
Statistics
Matches: 2451, Mismatches: 308, Indels: 147
0.84 0.11 0.05
Matches are distributed among these distances:
871 2 0.00
875 4 0.00
877 1 0.00
878 3 0.00
879 344 0.14
880 247 0.10
881 139 0.06
882 49 0.02
883 2 0.00
884 268 0.11
885 516 0.21
886 81 0.03
887 13 0.01
888 6 0.00
889 2 0.00
890 2 0.00
891 122 0.05
892 110 0.04
893 255 0.10
894 285 0.12
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (877 bp):
GCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCACATGATGTGCGATGGGTGCTGGTA
CTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
ATACAAGGATCACGTCAACAATGTTCAGGGCCAAAAATGCTTTCCGAAAAAATTTTAAAAAATCC
CGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCACGAAACTTCA
CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAA
TATGAAGATGTGCCTAAACCCACCTACCACTCTATCAATCCACGACTTGCGCATCCCGCCCCTCT
GGCCGACGTACTGCCCGCCCGCCAGCTCGTATCGTCGGTTGGCTTAGGCATACAGAGTTCATTCC
CAGTCTAAGATCAAACCAGACCGAGTGTTTCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCC
AGCCGATCCCCAGCTTACGCATCCCGCCCCTCTGGCCGACTGAGCGCCTGCACGCTCATTTCATG
GCCCGACTTAGGCATACGGAGTTCACTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGA
TCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTGCTGGTGCAGCATTTTT
CTTCGTCGAGGACCACCCACCGGACCTGGACG
Found at i:16158165 original size:26 final size:26
Alignment explanation
Indices: 16158134--16158193 Score: 79
Period size: 26 Copynumber: 2.4 Consensus size: 26
16158124 TTTGACTTAG
16158134 GCATACGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
* * *
16158160 GCATACAGAATTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
16158186 G-AT-CGGAG
1 GCATACGGAG
16158194 CAGACCGAGG
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
24 3 0.10
25 2 0.07
26 24 0.83
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTACCAGTCTAA
Found at i:16159047 original size:26 final size:26
Alignment explanation
Indices: 16159018--16159070 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16159008 CCCGAGTTAG
16159018 GCATACGGAGTTCACTCCCAATCTAA
1 GCATACGGAGTTCACTCCCAATCTAA
*
16159044 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCACTCCCAATCTAA
16159070 G
1 G
16159071 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAATCTAA
Found at i:16160475 original size:26 final size:26
Alignment explanation
Indices: 16160445--16160497 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16160435 TTTGACTTAG
* *
16160445 GCATACGGAGTTCATTACCAGTCTAA
1 GCATACAGAATTCATTACCAGTCTAA
*
16160471 GCATACAGAATTCATTCCCAGTCTAA
1 GCATACAGAATTCATTACCAGTCTAA
16160497 G
1 G
16160498 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAATTCATTACCAGTCTAA
Found at i:16161381 original size:26 final size:26
Alignment explanation
Indices: 16161345--16161397 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16161335 GTTGACTTAG
16161345 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
16161371 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16161397 G
1 G
16161398 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16161718 original size:899 final size:898
Alignment explanation
Indices: 16159707--16162185 Score: 3507
Period size: 899 Copynumber: 2.8 Consensus size: 898
16159697 ACCACCATCG
* * *
16159707 GACGGCATTAGGGTTCCGACGATCGAGCGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTG
1 GACGGCATTGGGGTTCCGGCGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTG
* * *
16159772 CTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACGTCAAAAACTCACACCCCCTTA
66 CTGGTACTTGGCCCTTATATTGGCCTTCTATCCCTCATCAAACCTC-AGAACTCACACCCCCTTA
* * *
16159837 AAGAGCATTTCAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
130 AAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
*
16159902 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTGAGCTGAATTTTTTTGTGCATGCC
195 TTTTTGAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTG-GCTGAATTTTTTTGTGCATGCC
* * *
16159966 AACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAACACTCTTTCTGAAGAAATTTTAAA
259 AAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCTTTCTGAAAAAATTTTAAA
* ** * ** *
16160031 AAATCTTGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAGTGAGTCGTTTTGCCATGAA
324 AAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* *
16160096 ACTTCACGTGAAGGCTTAAGGGACTATTGTATGAAATTACAAGCCATAAAAATGGCATTGGCACG
389 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* **
16160161 TAGAAATATGAAGATGTGCCTAAACCCACCAACCACTTTATCGATCCACGGCTTGCGCATCCCGT
454 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * *
16160226 CTCTCTGGCCGGCGTAATGCCCACCCGCCCGCCTGCCCGCTCATTTCGTCGATTGGCTTAGGCAT
519 CTCTCTGGCCGGCGTAGTGCCC-GCC-CCC-CC-GCCCGCTCATTTCGTCGGTTGGCTTAGGCAT
* * * * *
16160291 ACGGAGTTCATTCCCAATCTAAGATTC-GA-CTGAAC-GAGGGTTACGGCAACAGGATAGGCAGC
580 ACGGAGTTCATTCCCAATCTAAGA-TCAGACCAG-ACTGAGGGTTGCAGCACCAGGATAGACAGC
* * * * * * *
16160353 ACGTAGAGGGGGACCCGGCTGATCGTCGGCTTACGCATCCCGCCCCTCTGGCCGACTGATCGCCC
643 ACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACCC
* * * *
16160418 GCACGCTCGTTTCATGGTTTGACTTAGGCATACGGAGTTCATTACCAGTCTAAGCATACAGAATT
708 GAACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTACCAGTCTAAGCATACAGAATT
* *
16160483 CATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGATGGGCTCGGGCATGTG
773 CATTCCCAGTCTAAGATCGGACCGAACCAAGGGTTGCGACAGCACATGATGGGCTCGGGCATGTG
* ** * * *
16160548 CTGGTGCCACTTTTTTCTTCATCGGGGCACCATCGCCGGAGCAGAGCCGGAGATCTTGACC
838 CTGGTGCCACATTTTTCTTCATCAAGGCACCATCGCCGGAGCACAGACGGAGAACTTGACC
* * ** * * *
16160609 GACAGAATTGGGGTTTTGGCAATCAAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCT-ATTGG
1 GACGGCATTGGGGTTCCGGCGATCGAGGGGGCC-GGGGGGTGTGCGCACATGATGTG-TGATGGG
* *
16160673 TGCTGGTACTTGACCCTTATATTGGCCCTCTATCCCTCATCAAACCTCATGAACTCACACCCCCT
64 TGCTGGTACTTGGCCCTTATATTGGCCTTCTATCCCTCATCAAACCTCA-GAACTCACACCCCCT
*
16160738 TAAAGAGCATTTGAGATTTTATAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
128 TAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * *
16160803 CTTTTTTGAAATGGTCACAAAATCTTGTTCACTTCAAGTTTTTGGCTGAATTTTTTTGTGCATAC
193 CTTTTTTGAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTGTGCATGC
* * * *
16160868 CAAAAAAAATACAAGGATCACGTCTACTAAGTTTGGGGCCAAAAATGCTTTC-CAAAAAATTTTA
258 CAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACT-CTTTCTGAAAAAATTTTA
* * * * *
16160932 AAAAATCCCGAATCGTAAAAAGTTTCAAAAATCGTGAAAATTAGAAAACGAGTCATCTTGCCACG
322 AAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* * *
16160997 AGACTTCACGTGAAGGCTTTAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGTA
387 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
** * * * * *
16161062 CACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATGCATGACTTGTGCATCCC
452 CGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * * *
16161127 GTCTCTCTGGCCGACGTAGTGCCCGCCCCCCCGACAGCTCGTTTCGTTGGTTGGCTTAGGCATAC
517 GTCTCTCTGGCCGGCGTAGTGCCCGCCCCCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATAC
* * * *
16161192 GGACTTCATTCCCAATCTAAGATCAGACCAGACTGAGGGTTGCAGCACCAGGATTGATAGTACGC
582 GGAGTTCATTCCCAATCTAAGATCAGACCAGACTGAGGGTTGCAGCACCAGGATAGACAGCACGC
* * * **
16161257 AGAGGGGGACTCGACCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCACCCGAAC
647 AGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACCCGAAC
* * * * *
16161322 TCTCATTTTATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
712 GCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTACCAGTCTAAGCATACAGAATTCATT
* * *
16161387 CTCAGTCTAAGATCGGACCGAACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGG
777 CCCAGTCTAAGATCGGACCGAACCAAGGGTTGCGACAGCACATGATGGGCTCGGGCATGTGCTGG
* * *
16161452 TGCCACATTTTTCTTCGTCAAGGCACCGTCGTCGGAGCATCA-ACGGAGAACTTGACC
842 TGCCACATTTTTCTTCATCAAGGCACCATCGCCGGAGCA-CAGACGGAGAACTTGACC
* * *
16161509 GGCGGCATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTG
1 GACGGCATTGGGGTTCCGGCGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTG
*
16161574 CTGGTATTTGGCCCTTATATTGGCCTTCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
66 CTGGTACTTGGCCCTTATATTGGCCTTCTATCCCTCATCAAACCTC-AGAACTCACACCCCCTTA
* *
16161639 AAGAGCATTTGAGATTTTACAGGTTTGTTGCTAGTAGCCATTAAAGTGTCCGAAATGGGGACACT
130 AAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
*
16161704 TTTTTGAGATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTGTGCATGCCA
195 TTTTTGAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTGTGCATGCCA
* * ** * *
16161769 AAAAAAATACAAGGATCATGTCTACCAAGATTGGGGTCAAAACTCAATCTGAAAATATTTTGAAA
260 AAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCTTTCTGAAAAAATTTTAAAA
* *
16161834 AATCTC-ACACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTAGCCATAAA
325 AATCTCGA-ACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
*
16161898 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
389 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
*
16161963 TAGAATTATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
454 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * * * *
16162028 CTTTCTGGCTGGTGTAGTGCCCGCACGCCCGCCCGTTCATTTCGTCGGTTGGCTTAGGCATACGG
519 CTCTCTGGCCGGCGTAGTGCCCGCCCCCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGG
* ** * * **
16162093 AGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCAGCACCAAGATCGACAGCATACAG
584 AGTTCATTCCCAATCTAAGATCAGACCAGACTGAGGGTTGCAGCACCAGGATAGACAGCACGCAG
*
16162158 AGGGGGACCCGACCGATCCTCAGCTTGC
649 AGGGGGACCCGACCGATCCTCGGCTTGC
16162186 ACACATGATG
Statistics
Matches: 1381, Mismatches: 183, Indels: 29
0.87 0.11 0.02
Matches are distributed among these distances:
898 7 0.01
899 622 0.45
900 268 0.19
901 4 0.00
902 27 0.02
903 442 0.32
904 11 0.01
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (898 bp):
GACGGCATTGGGGTTCCGGCGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTG
CTGGTACTTGGCCCTTATATTGGCCTTCTATCCCTCATCAAACCTCAGAACTCACACCCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
TTTTGAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTGTGCATGCCAA
AAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCTTTCTGAAAAAATTTTAAAAA
ATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTA
GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
CTCTGGCCGGCGTAGTGCCCGCCCCCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAG
TTCATTCCCAATCTAAGATCAGACCAGACTGAGGGTTGCAGCACCAGGATAGACAGCACGCAGAG
GGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACCCGAACGCTC
ATTTCATGGGTTGACTTAGGCATACAGAGTTCATTACCAGTCTAAGCATACAGAATTCATTCCCA
GTCTAAGATCGGACCGAACCAAGGGTTGCGACAGCACATGATGGGCTCGGGCATGTGCTGGTGCC
ACATTTTTCTTCATCAAGGCACCATCGCCGGAGCACAGACGGAGAACTTGACC
Found at i:16162877 original size:26 final size:26
Alignment explanation
Indices: 16162847--16162899 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16162837 GTTGACTTAG
*
16162847 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16162873 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16162899 G
1 G
16162900 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16163770 original size:26 final size:26
Alignment explanation
Indices: 16163733--16163785 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16163723 GTTGATTTAG
16163733 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
16163759 GCATAC-GAAGTTCATTCCTAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
16163785 G
1 G
16163786 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16164240 original size:898 final size:884
Alignment explanation
Indices: 16162505--16165008 Score: 3374
Period size: 898 Copynumber: 2.8 Consensus size: 884
16162495 TCAAAAATCA
* * *
16162505 TGAAGGCTTAAGGGACCAATT-TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCATAAAT
1 TGAAGGCTTAAGGGACC-ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAAT
* *
16162569 ATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACAGCTTGCACATCCCGTCTCTCTG
65 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTG
* * * * *
16162634 GATGACGTAGTGCCCGCCCGCCAGCCCACCCGTTCGTTTTGTCGGTTGGCTTAGGCATACGAAGT
130 GCTGACGTAGTGCCCGCCCGCCTG----CCCGCTCGTTTCGTC-GTTGGCTTAGGCATACGGAGT
* * * * *
16162699 TCATTCCTAGTCTAAGATCAGACCAAACTAAGGGTTGCAGCAGTAGGATCGGTAGCATGCAGAGG
190 TCATTCCTAGTCTAAGATCAGACCGAACTGAGGGTTG-AGCAGCAGGATCGGCAGCACGCAGAGG
* * ** * * * *
16162764 CGGACCCGATCGATCCCCGGCTTGTGCATCCCGTCGCTCTGGCTGGCTGAGCGCCCGCACACTCG
254 GGGACCCGACCGATCCCCGGCTTACGCATCCTGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCG
**
16162829 TTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT-CTCA
319 TTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCT-A
* * * * * * * * *
16162893 GTCTAAGATTGGACCAGATCGAGGGTTACGGCAACACATGCTGGTCTCGGGCATGTGCTGCTGCT
383 GTCTAAGATCGGACTAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCC
** * * *
16162958 GCATTTTTCTTCGTCGGGGCACCATCGTCAGAGAACCTGACCGACGACATTGGGGTTCCA-GCCT
448 ATATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCATG-AT
** ** * *
16163022 TAGGGGGCCGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCCTATATTGGG
512 CGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCATATATTGGC
* *
16163087 CCCCTATCCCTC-TTAAAGCCTCAAGAACTCACACCCTCTTAAAGTGCATTTGAGATTTTACAGG
577 CCCCTATCCCTCATCAAA-CCTCAAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGG
*
16163151 TTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
641 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* * * * * *
16163216 TGTAAACTTTGAATTTTTAGCTGAATTTTTTTGAGCATGCCAACAAAAATATAAGGATCAGGTCT
706 TGTACACTTCGAATTTTTAGCTGAATTTTTTTGAGCAAGCCAAAAAAAATACAAGGATCACGTCT
*
16163281 ACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTC
771 ACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAAATTTAAAAAATCCCGAACCACAAAAAGTTTC
*
16163346 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
836 AAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACG
*
16163395 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAATTA
1 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATA
* *
16163460 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGG
66 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGG
* * *
16163525 CCGACGTATTGCCCGCCCGCCTGCCCGCTCATTTCGTCAGTTGGCTTAGGCATACGGAGTTCATT
131 CTGACGTAGTGCCCGCCCGCCTGCCCGCTCGTTTCGTC-GTTGGCTTAGGCATACGGAGTTCATT
*
16163590 CCTAGTCTAAGATCAGACCGAACTGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGAC
195 CCTAGTCTAAGATCAGACCGAACTGAGGGTTG-AGCAGCAGGATCGGCAGCACGCAGAGGGGGAC
** * * * * *
16163655 TTGACCGATCTCCGGCTTACGCATCCTGCCCCTCTGGCCGACGGAGCGCCCGCACGCTCGTTTCG
259 CCGACCGATCCCCGGCTTACGCATCCTGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCA
* *
16163720 TGGGTTGATTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCTAGTCTAA
324 TGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAA
* *
16163785 GATCGGACTGGACCGAGGGTTGCGGCAGTACATGCTGGGCTCAGGCATGTGCTGGTGCCATATTT
389 GATCGGACTAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCATATTT
*
16163850 TTCTTTGTCGGGGCACCATTGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCG
454 TTCTTCGTCGGGG---CA----C----CATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCC-
* * *
16163915 ATGATCGGGGGGCCGGGGGGTGTGCACACATGATGTACGATGGGTGCTGGTGCTTGGCCCTTATA
507 ATGATCGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCATATA
* *
16163980 TTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTATA
572 TTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTA
* *
16164045 CAGGTTTGCTGCCAATAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAA
637 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
*
16164110 ATCTTGTACACTTCGAATTTTTAGCTGAATTTTTTTGTGCAAGCCAAAAAAAATACAAGGATCAC
702 ATCTTGTACACTTCGAATTTTTAGCTGAATTTTTTTGAGCAAGCCAAAAAAAATACAAGGATCAC
* * * * ***
16164175 GTCTATCAAGTTTGGGGCCAAAATTCCTTCCAAAAAAAATTTGAAAAATCCTGAACTGTAAAAAG
767 GTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAAATTTAAAAAATCCCGAACCACAAAAAG
*
16164240 TTTTAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACG
832 TTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACG
**
16164293 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTCACATGTAGAAATA
1 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATA
* * * * * * * *
16164358 TGAAGATGTGCGTAAACCCGCCTATCACCCTATCAATCCATGGCTTGCACATCCTGCCTCTCTAG
66 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGG
* * * *
16164423 CTGGCGTAGGGCCCGCCCGCCCGTCTGCCCACTCGTTTCGTCGTTGGCTTAGGCATACAGAGTTC
131 CTGACGTAGTGCCCGCCCG--C--CTGCCCGCTCGTTTCGTCGTTGGCTTAGGCATACGGAGTTC
* * ** * * * * * *
16164488 ATTCCCAATCTAAGATCAGATTGGACTGAGGATTGCGTAGCAGGATCGACAACACGCAGAGGGGG
192 ATTCCTAGTCTAAGATCAGACCGAACTGAGGGTTGAGCAGCAGGATCGGCAGCACGCAGAGGGGG
*
16164553 ACCCGACCGATCCCCGGCTTACGCATCCCT-CCCCTCTGGATGGCTGAG-GCCCGCACGCTC-TT
257 ACCCGACCGATCCCCGGCTTACGCAT-CCTGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTT
* *
16164615 GTCATGGGTTGACTTAGGCATTCAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
321 -TCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGT
* * ** *
16164680 TTAAGATCGGA-TCAGACCGATGCG-TGCTACAGCACATGCTGGGCT-TGGCCATGTGCTGGTGC
385 CTAAGATCGGACT-AGACCGA-GGGTTGCGGCAGCACATGCTGGGCTCAGG-CATGTGCTGGTGC
* * * * * *
16164742 CATATTTTTCTCCGCCGGGGCACCATCGTCGGAGAACCTAATCGGCAGCATT-GGGTTACCAATG
447 CATATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGACGGCATTGGGGTT-CC-ATG
* *
16164806 ATCGGGGGGGCCGGGGGGTGTGCACAGATGATGTGCGATGGGTACTGGTACTTGGCCCATATATT
510 ATC-GGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCATATATT
* * *
16164871 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACTCTCTTAAAGAGCATTCGAGATTTTACA
574 GGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACA
* **
16164936 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACATTTTTCAAATACTCACAAAAT
639 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
16165001 CTTGTACA
704 CTTGTACA
16165009 TTTCCATCAT
Statistics
Matches: 1423, Mismatches: 164, Indels: 55
0.87 0.10 0.03
Matches are distributed among these distances:
886 267 0.19
887 7 0.00
888 33 0.02
889 189 0.13
890 137 0.10
892 1 0.00
893 1 0.00
896 2 0.00
897 35 0.02
898 475 0.33
899 140 0.10
900 66 0.05
901 54 0.04
902 16 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (884 bp):
TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATA
TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGG
CTGACGTAGTGCCCGCCCGCCTGCCCGCTCGTTTCGTCGTTGGCTTAGGCATACGGAGTTCATTC
CTAGTCTAAGATCAGACCGAACTGAGGGTTGAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCC
GACCGATCCCCGGCTTACGCATCCTGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCATG
GGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGA
TCGGACTAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCATATTTTT
CTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCATGATCGGGGGGCC
GGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATCC
CTCATCAAACCTCAAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
GAATTTTTAGCTGAATTTTTTTGAGCAAGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTG
GGGCCAAAAATCCTTCCAAAAAAAATTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCGTG
AAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACG
Found at i:16164661 original size:26 final size:26
Alignment explanation
Indices: 16164632--16164684 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16164622 GTTGACTTAG
*
16164632 GCATTCAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
16164658 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16164684 G
1 G
16164685 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16165916 original size:26 final size:26
Alignment explanation
Indices: 16165877--16165927 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16165867 GTTGACTTAG
*
16165877 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGACTTCATTCCCAGTCTAA
*
16165903 GCATACGGACTTCATTCCCAGTCTA
1 GCATACAGACTTCATTCCCAGTCTA
16165928 GGATTGAACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.27
Consensus pattern (26 bp):
GCATACAGACTTCATTCCCAGTCTAA
Found at i:16167649 original size:26 final size:26
Alignment explanation
Indices: 16167613--16167663 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
16167603 TTGACTTAGG
16167613 CATACGGAGTTCATTCCCAGTCTAAC
1 CATACGGAGTTCATTCCCAGTCTAAC
16167639 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
16167664 GATTGGATTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAC
Found at i:16168807 original size:26 final size:26
Alignment explanation
Indices: 16168771--16168823 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16168761 GTTGACTTAG
*
16168771 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16168797 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16168823 G
1 G
16168824 ATTGGAATGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16169706 original size:26 final size:26
Alignment explanation
Indices: 16169667--16169719 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16169657 GTTGACATAG
*
16169667 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
16169693 GCATACGGACTTCATTCCCAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
16169719 G
1 G
16169720 ATTGAATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGACTTCATTCCCAGTCTAA
Found at i:16170938 original size:26 final size:26
Alignment explanation
Indices: 16170909--16170961 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16170899 GTTGACTTAG
16170909 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16170935 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16170961 G
1 G
16170962 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16173434 original size:26 final size:26
Alignment explanation
Indices: 16173398--16173450 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16173388 ATTGGCTTAG
*
16173398 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16173424 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16173450 G
1 G
16173451 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16174108 original size:739 final size:739
Alignment explanation
Indices: 16172627--16174159 Score: 2299
Period size: 739 Copynumber: 2.1 Consensus size: 739
16172617 CCGACTGAGT
* * * * * * *
16172627 GCCCGCACGCTCATTTCGTGGGTTGACTTAAGCATATGGAGTTTATTCCCAGTTTAAGCATACAG
1 GCCCGC-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAG
* * * * *
16172692 AGATCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCAAGTGCA
65 AGATCATTCCCAGTCTAAGATCGGACCAGACCAAGCGTTGCGACAGCACATGCTGGGCAAGGGCA
* * * * *
16172757 TGTACTGTCGACACATTTTTCTTCATCGGGGCACCATCGCTGGAGCATCGTCGGAGAACTTGACT
130 TGTACTGTCGACACATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCCTCGGAGAACCTGACC
* * * * * *
16172822 GGCAGCATTGGGGTTCTGACGATCGGGGGGGCCGGGGGGTGTGCGTACATGATGTGCGATGGGTG
195 GACAACATTGGGATTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATCGGTG
*
16172887 CTGGTACTTGGCCCTTTTATTGGCCCCCTATCCCTCCTCAAACCTCGACAACTCACACCCCCTTA
260 CTGGTACTTGGCCCTTTTATTGGCCCCCTATCCCTCATCAAACCTCGACAACTCACACCCCCTTA
16172952 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACA
325 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACA
* *
16173017 TTTTTCCAATGGTCACAAAATCTTGTACACTATGAGTTTTTAGCTAAATTGTTTTGTGCATGCCA
390 TTTTTCAAATGGTCACAAAATCTTGTACACTATGAGTTTTTAGCTAAATTGTTTTGTGCATACCA
16173082 ACAAAAATACAGGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAA
455 ACAAAAATACAGGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAA
* * * *
16173147 AATCCAGAACTGTAAAAAGTTTCCAAAATCGTGAAAAATAGAAAACGAGTCGTCTCGCCATGAAA
520 AATCCAGAACCGTAAAAAGTTTCAAAAATCATAAAAAATAGAAAACGAGTCGTCTCGCCATGAAA
*
16173212 CTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATAAAAATGGCATTGGCACAC
585 CATCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATAAAAATGGCATTGGCACAC
* * * *
16173277 AGAAATATGAAGATGTGCCTAAACCAACCTATCACCCTATCGATCCACGGCTTGCGCATCTCGTC
650 AGAAATATGAAGATGTGCCTAAACCAACCTACCACCATATCGATCCACGGCTTACGCATCCCGTC
* * *
16173342 TCTCTAGCTGACGTAGTGACTGCCC
715 TCTCTAGCTGACATAGAGACCGCCC
*
16173367 GCCCGCCTGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAG
1 GCCCGCC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAG
* * * **
16173432 AGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGCGTTGTGATAGCACATGCTGGGCTCGGGCA
65 AGATCATTCCCAGTCTAAGATCGGACCAGACCAAGCGTTGCGACAGCACATGCTGGGCAAGGGCA
* * ** *
16173497 TGTGCTGGT-GCCGTATTTTTCTTTACCGGGGCACCATCGCCGGAGCATCACT-GGAGAACCTGA
130 TGTACT-GTCGACACATTTTTCTTCACCGGGGCACCATCGCCGGAGCATC-CTCGGAGAACCTGA
* * *
16173560 CCGACAACATTGGGATTCCGGCGATC-GGGGGGCCGGGGGGTGTGCGCCCATGATGTGCGGTCGG
193 CCGACAACATTGGGATTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATCGG
* *
16173624 TGCTGGTACTTGGCCCTTTTCTTGGCCCCCTATCCCTCATC-AACCTCGACAACTCACACCCCTT
258 TGCTGGTACTTGGCCCTTTTATTGGCCCCCTATCCCTCATCAAACCTCGACAACTCACACCCCCT
* * * *
16173688 TAAATAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAAATGGGGATA
323 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * *
16173753 CCTTTTTTCAAATGGTCACAAAATCTTGTACACTGTGAGTTTTTAGCTGAATTGTTTTGTGCATA
388 -CATTTTTCAAATGGTCACAAAATCTTGTACACTATGAGTTTTTAGCTAAATTGTTTTGTGCATA
*
16173818 CCAACAAAAATACAGGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
452 CCAACAAAAATACAGGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTA
** * *
16173883 AAAAATCTTGAACCGTAAAAGGTTTCAAAAATCATAAAAAATAGAAAACGAGTCGTCTTGCCATG
517 AAAAATCCAGAACCGTAAAAAGTTTCAAAAATCATAAAAAATAGAAAACGAGTCGTCTCGCCATG
16173948 AAACATCACGTGAAGG-TCTAAGGGACCATTCTATGAATTTACAAGCCATAAAAATGGCATTGGC
582 AAACATCACGTGAAGGCT-TAAGGGACCATTCTATGAATTTACAAGCCATAAAAATGGCATTGGC
* *
16174012 ACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACGGCTTACGCATCC
646 ACACAGAAATATGAAGATGTGCCTAAACCAACCTACCACCATATCGATCCACGGCTTACGCATCC
* * *
16174077 CGTCTCTCTGGCTGGCATAGAGCCCGCCC
711 CGTCTCTCTAGCTGACATAGAGACCGCCC
**
16174106 G--C-CCGCTCGTTTAATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
1 GCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
16174160 ATCGGATCGA
Statistics
Matches: 714, Mismatches: 74, Indels: 15
0.89 0.09 0.02
Matches are distributed among these distances:
735 47 0.07
736 2 0.00
737 1 0.00
738 84 0.12
739 398 0.56
740 179 0.25
741 3 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (739 bp):
GCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGA
GATCATTCCCAGTCTAAGATCGGACCAGACCAAGCGTTGCGACAGCACATGCTGGGCAAGGGCAT
GTACTGTCGACACATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCCTCGGAGAACCTGACCG
ACAACATTGGGATTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATCGGTGC
TGGTACTTGGCCCTTTTATTGGCCCCCTATCCCTCATCAAACCTCGACAACTCACACCCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACAT
TTTTCAAATGGTCACAAAATCTTGTACACTATGAGTTTTTAGCTAAATTGTTTTGTGCATACCAA
CAAAAATACAGGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAA
ATCCAGAACCGTAAAAAGTTTCAAAAATCATAAAAAATAGAAAACGAGTCGTCTCGCCATGAAAC
ATCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATAAAAATGGCATTGGCACACA
GAAATATGAAGATGTGCCTAAACCAACCTACCACCATATCGATCCACGGCTTACGCATCCCGTCT
CTCTAGCTGACATAGAGACCGCCC
Found at i:16175204 original size:26 final size:26
Alignment explanation
Indices: 16175168--16175220 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16175158 GTTGACTTAG
16175168 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
* *
16175194 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
16175220 G
1 G
16175221 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Done.