Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 86 of 195
Found at i:16176103 original size:26 final size:26
Alignment explanation
Indices: 16176074--16176126 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16176064 GTTGACTTAG
*
16176074 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16176100 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16176126 G
1 G
16176127 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16176358 original size:906 final size:893
Alignment explanation
Indices: 16174292--16176627 Score: 3192
Period size: 906 Copynumber: 2.6 Consensus size: 893
16174282 GTTTACTTAG
* * * * * * *
16174292 GCATACAGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACTTCCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGA-CGGACCAAGGGTTAC-GCAGCACATGCTGGG
** * ** * * * *
16174357 CTCGATCATGTGTTGGTGCCAAATTTTTCTTCGCTGGGGCACCATCACTGGAGCATCATCGGAGA
64 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCCCCGGGGCACCATCACCGGAGCATCACCGGAGA
* *
16174422 ACCTGACCGATGGCATTGGGGTTCCGACGATCGGGGGGCTGGGGGGGATATGCACACATGATGTG
129 ACCTGACCGATGGCATTGGGGTTCCGACGATCGGGGGGC-GGGGGGG-TGTGCGCACATGATGTG
*
16174487 CGATGGGTGCTGGTACCTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
192 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
16174552 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
257 A-CCCCTTAAAGAGCATTTGAGATTTTACAGATTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
16174617 GGGGACACTTTTTTCAAATGGTCACAGAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
321 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
16174682 TGCACGCCAAAAAAAAATACAGGGATCACGTTTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAA
386 TGCATGCC-AAAAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCC-AAAATCCTTCCGAAAA
* *
16174747 AATTTTAAAAAAATC-CAGAACCGTAAAAAGTTTTC-AGAATCATGAAAAATAGAAAACGAGTCG
449 AATTTT-AAAAAATCTC-GAACCGTAAAAAG-TTTCAAAAATCATGAAAAATAAAAAACGAGTCG
* *
16174810 TCTCGTCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
511 TCTTGCCATGAAACTTCACGTGAAGG-TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * * * *
16174875 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATTGATCGATGGCT
575 GGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * *
16174940 TGCGCATCCCGTCTCTCTAGCC-GATGTAGTGACTGCCTGCCCGCCCGCTCGTTTCATTGATTGG
640 TACGCATCCCGTCTCTCTGGCCGGA-GTAGTGCCCGCCT-CCCGCCCGCTCGTTTCATCGGTTGG
* * * * * * * *
16175004 CTTAAGTATACGGAGTTAATTCCCTGTCTAAGATCAAACCGGACT-GAGGGTTGTGGCAGCAGGA
703 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAATCGGAATCGAGGGTTGCGGTAGCAGGA
* * * *
16175068 TCGATAGCATGTAGAGGGGGACCCGATCGAT-CTCCGGCTTGCCCATCCCACCCCTCTGGCCGGC
768 TCGGTAGCACGTAGAGGGGGACCCGATCGATCCT-CGGCTTGCGCATCCCACCCCTCTGGCCAGC
* * *
16175132 TGAGCGCCCGCACGCTCATTCCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAA
832 TGAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAA
* * * * *
16175194 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGATCAAAGTTTACG-ATTGCACATGCTAG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGAC-GGACCAAGGGTTACGCA--GCACATGCTGG
* ** **
16175258 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTACGTCGGGGCACCATCACCGGAGCATCGTCGGAG
63 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCCCCGGGGCACCATCACCGGAGCATCACCGGAG
* *** * * *
16175323 AACCTGACGGGCAGCATTAGGGTTCCGGCGATCAGGGGGGCCGAGGGGGGTGTGCGCAGATGATG
128 AACCTGACCGATGGCATTGGGGTTCCGACGATC-GGGGGG-CG-GGGGGGTGTGCGCACATGATG
*
16175388 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
190 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
16175453 ACAACCCCTTAAAGAGCATTTGAGATTTTACAGATTTGCTGCCAGTAGCGATTAAAGTGTCTGAA
255 AC-ACCCCTTAAAGAGCATTTGAGATTTTACAGATTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
16175518 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTCAATTTTTT
319 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
16175583 TATGCATGCCAAAAAAAATAAAAGGATCACGTCTACCTATTTTGGGGCCAAAATCCTTTCGAAAA
384 TGTGCATGCCAAAAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAATCCTTCCGAAAA
* *
16175648 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTTGTCT
449 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCT
*
16175713 TGCCATGAAACTTCACGTGAAGGATAAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
514 TGCCATGAAACTTCACGTGAAGG-TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
16175778 ATTGGCACGTAGAAATATGAAGATGTGCTTGAACCCACCTAGCACCCTATCGATTCCACGGCTTA
578 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA-TCCACGGCTTA
* *
16175843 CGCATCCCGTCTCTCTGGCCGGAGTAGTGCCCGCCCTCTCGCAAGCCCGTTCGTTTCGTCGGTTG
642 CGCATCCCGTCTCTCTGGCCGGAGTAGTGCCCG-CCTC-C-C--GCCCGCTCGTTTCATCGGTTG
* * *
16175908 GCTTAGGCATACGGAGTTCATTCCCAGCCTAAGATCCAATCGGAATCGAGGGTTACGGTAGCAGG
702 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAATCGGAATCGAGGGTTGCGGTAGCAGG
* * * * * *
16175973 ATGGGTAGCACGTAGAAGGGGACCCGATCGATCCTCGGCTTACGCACCCCACTCCTCTGGCCAGT
767 ATCGGTAGCACGTAGAGGGGGACCCGATCGATCCTCGGCTTGCGCATCCCACCCCTCTGGCCAGC
* * * * *
16176038 TGAACGCTCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
832 TGAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAA
16176100 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTACAGCAGCACATGCCTGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGA-CGGACCAAGGGTTAC-GCAGCACATG-CTGG
* * * * * *
16176165 GCTCGGGCCTGTGCTGGTGCCGCATTTTTCTTCCCCTGAGCACCATCGCCGGAGCATCACCGAAG
63 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCCCCGGGGCACCATCACCGGAGCATCACCGGAG
* * *
16176230 AACTTGATCGATGGCATTGGGGTTCCGACGATCAGAGGGGTCGGGGGGTGTGTGCGCACATGATG
128 AACCTGACCGATGGCATTGGGGTTCCGACGATC-G-GGGGGCGGGGGG-GTGTGCGCACATGATG
16176295 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTC
190 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
16176359 ACACCCTCTTAAAGAGCATTTGAGATTTTACAGATTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
255 ACACCC-CTTAAAGAGCATTTGAGATTTTACAGATTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
16176424 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTTGAGTTTTTAGCTGAATTTTTT
319 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * **
16176489 TGTGCTTGCCAACAAAAATAAAAGGATCACGTCTACCTAGTTTGGGGCCAAAATCCTTTTGAAAA
384 TGTGCATGCCAAAAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAATCCTTCCGAAAA
* * * * *
16176554 AATTTTAAAAAATCCCGAACTGCAAAAAGTTTCAAAAATCATGAAAAAGAAAAAACGAGTCATCT
449 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCT
16176619 TGCCATGAA
514 TGCCATGAA
16176628 GATGTGCTTG
Statistics
Matches: 1267, Mismatches: 142, Indels: 46
0.87 0.10 0.03
Matches are distributed among these distances:
899 4 0.00
900 156 0.12
901 59 0.05
902 168 0.13
903 215 0.17
904 8 0.01
905 59 0.05
906 454 0.36
907 139 0.11
908 5 0.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (893 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGGACGGACCAAGGGTTACGCAGCACATGCTGGGCT
CGGGCATGTGCTGGTGCCGTATTTTTCTTCCCCGGGGCACCATCACCGGAGCATCACCGGAGAAC
CTGACCGATGGCATTGGGGTTCCGACGATCGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
CTTAAAGAGCATTTGAGATTTTACAGATTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
GCCAAAAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAATCCTTCCGAAAAAATTTTA
AAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATG
AAACTTCACGTGAAGGTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCG
TCTCTCTGGCCGGAGTAGTGCCCGCCTCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGG
AGTTCATTCCCAGTCTAAGATCAAATCGGAATCGAGGGTTGCGGTAGCAGGATCGGTAGCACGTA
GAGGGGGACCCGATCGATCCTCGGCTTGCGCATCCCACCCCTCTGGCCAGCTGAGCGCCCGAACG
CTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAA
Found at i:16176764 original size:25 final size:26
Alignment explanation
Indices: 16176730--16176781 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16176720 GTTGGCTTAG
*
16176730 GCATACGGAG-TTATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
*
16176755 GCATACGGAGCTCATTCCTAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
16176781 G
1 G
16176782 ATCAGAACGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 10 0.42
26 14 0.58
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:16178563 original size:26 final size:26
Alignment explanation
Indices: 16178510--16178565 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
16178500 TGGGTTGACT
** *
16178510 TAAGCATTTGGAGTTCATTCCTAGTC
1 TAAGCATACGGAGTTCATTCCTAATC
16178536 TAAGCATACGGAGTTCATTTCC-AATC
1 TAAGCATACGGAGTTCA-TTCCTAATC
16178562 TAAG
1 TAAG
16178566 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.34
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCTAATC
Found at i:16178645 original size:897 final size:891
Alignment explanation
Indices: 16176712--16178909 Score: 2993
Period size: 898 Copynumber: 2.5 Consensus size: 891
16176702 CGCCCGCACA
* * *
16176712 TTTCGTCGGTTGGCTTAGGCATACGGAGTT-ATTCCCAGTCTAAGCATACGGAGCTCA-TTCCTA
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAGCATACGGAGTTCATTTCC-A
*
16176775 GTCTAAGATCAGAACGGACCGAGGGTTAC-AGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
64 GTCTAAGATCAGACCGGACCGAGGGTTACGAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* *
16176839 CACATTTTTCTTCACCGGGGCACCA---T----CAT-CGGAGAACCTGACCGACGGCATTGGGGT
129 CGCATTTTTCTTCACCGGGGCACCATCGTCGGGCATCCGGAGAACCTGACCGACGGCATTAGGGT
* * * * *
16176896 TCCGACGATCGGGGGGGCCAGGGGGTGTGCCCACATGATGTACGATGGGTGCTGGTACCTGGCCC
194 T-CGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
16176961 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGA
258 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* *
16177025 TTTTACAAGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
323 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
** * *
16177090 ACAAAATCTTGTACACTTTGAGTTTTTAGCTGAGTTTTTTTGTGCATGCCAACAAAAATACAAGG
388 ACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGG
* * * ** * * *
16177155 ATCACGTCTACCAAGTTTGGGGCCAAAACCCTTTCGAAAATTTTTTAAAAAATCTCGAACTGCAA
453 ATCACATCT---AAGTTTGGGGCCAAAACCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGCAA
* * *
16177220 TAAGTTTCAAAAATCGTGAAAAATAGAAAACTAGTCGTCTCGCCATGAAACTTCACGTGAAGGCT
515 AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTCGCCATGAAACTTCACGTGAAGGCT
* ** * *
16177285 TAAGGGACCATTGTATGTATTTACAAGCCATAAAAATGGCATTGGCACGCATAAATATGAAGATG
580 TAAGGGACAATTGTATCCATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATG
* * *
16177350 TGCCTAAACCCACCTACCATCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTAGCCGGCGTA
645 TACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATATCTCTAGCCGGCGTA
* * * *
16177415 CTGCCCGCCCGCCCGCCTGCTTGTTTCGTCAGTTGGCTTAGGCCTACGGAGTTCATTCCCAGTCT
710 CTGCCCGCCCGCCCGCCTGCTTATTTCATCAGTTGGCTTAGGCATAAGGAGTTCATTCCCAGTCT
* * * * *
16177480 AAGATCAGACCAGACTGAGTGTTGTGGCAGCAGGATCGATAGCACTTAGAGGGGGACCTGGCCGA
775 AAGATCAGACCAGACTGAGGGTTATGGCAGCAGGATCGACAGCACTCAGAGGGGGACCCGGCCGA
* *
16177545 TCCCCGACTTGCGCATCTCGCCCCTCTGGCCGGCTCAGCGCCTGCACGCTCG
840 TCCCCGACTTGCGCATCTCGCCCCTCTGGCCGGCTCAGAGCCCGCACGCTCG
* * * * *
16177597 TTTCGTGGGTTGACTTAGGCATGCGAAGTTCATTTCCAGTCTAAGCAGATGGAGTTCATTCCCAG
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCA-TTCCAGTCTAAGCATACGGAGTTCATTTCCAG
* * *
16177662 TCTAAGATCAGACTGGACCGAGGGTT--GTAGCAGCACATGCTGGGCTCGAGCATGTGCTGCG-A
65 TCTAAGATCAGACCGGACCGAGGGTTACG-AGCAGCACATGCTGGGCTCGGGCATGTGCTG-GTG
* * * *
16177724 CCGTATTTTTCTTCGCCAGGGCACCATCGTCAGGGCATCACCGGAGAACCTGACCGACGGCATTT
128 CCGCATTTTTCTTCACCGGGGCACCATCGTC-GGGCAT--CCGGAGAACCTGACCGACGGCATTA
*
16177789 GGGTTCGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTTGTACTTGG
190 GGGTTCGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
*
16177854 CCCTTATATTGGCCCCCTATCCCTCACCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
255 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* *
16177919 AGATTTTACAGGTTTGCTGGCAGTAGCCATTAAAGTGTCTGAAATGGGAACACTTTTTTCAAATG
320 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
16177984 GTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACA
385 GTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACA
* * * *
16178049 AGGATCACATCT-AGTTTTGGGCCAAAATGCCTTCCAAAAAAATTTTAAAAAGTCCCAAACCGTA
450 AGGATCACATCTAAGTTTGGGGCCAAAA-CCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGCA
* *
16178113 AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGGCATGAAACTTCACGTGAAGGC
514 AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTCGCCATGAAACTTCACGTGAAGGC
16178178 TTAAGGGACAATTGTATCCATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGAT
579 TTAAGGGACAATTGTATCCATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGAT
* * * * * *
16178243 GTACCTAAACCCACCTGCCACCCTATCGATCGATGGCTTGCGCATCCCGTATCTCTGGCTGGCGT
644 GTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATATCTCTAGCCGGCGT
* * *
16178308 AGTGCCCGCCTGCCCGTCC-GCCCGTTCATTTCATCGGTTGGCTTAGGCATAAGGAGTTCATTCC
709 ACTGCCCGCCCGCCCG-CCTG--C-TT-ATTTCATCAGTTGGCTTAGGCATAAGGAGTTCATTCC
* * *** * *
16178372 CAGTCTTAGATCGGATTGGA-TCGAGGGTTATGGTAGCAGGATCGGCAGCA-TGCAGAGGGGGAC
769 CAGTCTAAGATCAGACCAGACT-GAGGGTTATGGCAGCAGGATCGACAGCACT-CAGAGGGGGAC
* * * *
16178435 CCGGCCGATTCCCGGCTTGCGCATC-CTGCCCCTCTGGCCGGCTGAGAGCCCGCACGCTTG
832 CCGGCCGATCCCCGACTTGCGCATCTC-GCCCCTCTGGCCGGCTCAGAGCCCGCACGCTCG
* ** *
16178495 TTTCGTGGGTTGACTTAAGCATTTGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTTCCAA
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-AGTCTAAGCATACGGAGTTCATTTCCAG
* * * *
16178560 TCTAAGATCGGACCGGACCGAGGGTTACGA-AAGCACATGCTGGGCTCGGGCATATGCTGGTGTC
65 TCTAAGATCAGACCGGACCGAGGGTTACGAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* ** * *
16178624 GCA-TTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGGGAACCTGACCGGTGGAATTACG
130 GCATTTTTCTTCACCGGGGCACCATCGTCGG-GCATC--CGGAGAACCTGACCGACGGCATTAGG
* *
16178688 GTTCTGACCA-TCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
192 GTTC-GACGATTGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* * *
16178752 CCCTTATATCGGGCCCCTATCCCTCATCAAACCTCGAGAGCTCACACCCCCTTAAAGAGCATTTG
255 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
*
16178817 AGATTTTAAAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
320 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* * *
16178882 GTCAAAAAATCTTATATACTTCAAGTTT
385 GTCACAAAATCTTGTACACTTCAAGTTT
16178910 CAAGGATCAC
Statistics
Matches: 1152, Mismatches: 125, Indels: 59
0.86 0.09 0.04
Matches are distributed among these distances:
885 26 0.02
886 99 0.09
887 6 0.01
889 1 0.00
893 14 0.01
894 220 0.19
895 3 0.00
896 102 0.09
897 249 0.22
898 430 0.37
899 1 0.00
900 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (891 bp):
TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGCATACGGAGTTCATTTCCAGT
CTAAGATCAGACCGGACCGAGGGTTACGAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
CATTTTTCTTCACCGGGGCACCATCGTCGGGCATCCGGAGAACCTGACCGACGGCATTAGGGTTC
GACGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
AAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATC
ACATCTAAGTTTGGGGCCAAAACCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTT
TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTCGCCATGAAACTTCACGTGAAGGCTTAAGGG
ACAATTGTATCCATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTACCTA
AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATATCTCTAGCCGGCGTACTGCCC
GCCCGCCCGCCTGCTTATTTCATCAGTTGGCTTAGGCATAAGGAGTTCATTCCCAGTCTAAGATC
AGACCAGACTGAGGGTTATGGCAGCAGGATCGACAGCACTCAGAGGGGGACCCGGCCGATCCCCG
ACTTGCGCATCTCGCCCCTCTGGCCGGCTCAGAGCCCGCACGCTCG
Found at i:16179378 original size:26 final size:26
Alignment explanation
Indices: 16179327--16179379 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16179317 GTTGACTTAG
*
16179327 GCATATGGAGTTCATTCCCAGCCTAA
1 GCATATGGAGTTCAATCCCAGCCTAA
* *
16179353 GCATATGGAGTTCAATCTCAGTCTAA
1 GCATATGGAGTTCAATCCCAGCCTAA
16179379 G
1 G
16179380 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCAATCCCAGCCTAA
Found at i:16181105 original size:26 final size:26
Alignment explanation
Indices: 16181069--16181121 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16181059 GTTGACTTAG
16181069 GCATTCGGAGTTCATTCCCAGTCTAA
1 GCATTCGGAGTTCATTCCCAGTCTAA
*
16181095 GCATTTGGAGTTCATTCCCAGTCTAA
1 GCATTCGGAGTTCATTCCCAGTCTAA
16181121 G
1 G
16181122 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.23, C:0.25, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATTCGGAGTTCATTCCCAGTCTAA
Found at i:16181995 original size:26 final size:26
Alignment explanation
Indices: 16181959--16182009 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
16181949 TTGACTTAGG
16181959 CATACGGAGTTCATTCCCAGTCTAAA
1 CATACGGAGTTCATTCCCAGTCTAAA
16181985 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
16182010 GATCAGACCG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAA
Found at i:16184357 original size:884 final size:878
Alignment explanation
Indices: 16179389--16185018 Score: 6433
Period size: 901 Copynumber: 6.4 Consensus size: 878
16179379 GATCGGACCG
* * * * * *
16179389 GACCGAGGGTTACGGCAGCACATGTTGGGCTCGGGCCTGTGCTGGTGCCACATTTTTTTTCGTCG
1 GACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCG
* * * * *
16179454 GGGCACCATCGCCGGAGCATCGTCGGAGAACCTGATCGGCGGCATTGGGGTTCCAACGATCGGGT
66 GGGCACCATCGTCGGAGCATCGTCAGAGAACCTGATCGACGGCATTGGGGTTTCGACGATCGGG-
* *
16179519 GGGCCGGGGGGTGTGCGCACATGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
130 GGGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* *
16179584 TATCCCTCATCAAACCTCGAGAACTCACACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
195 TATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * * *
16179649 TACCAATAGCCGTTAAAGTGTCTGAAATTGG-GACACTTTTTTCAAATGGACACAAAATCTTGTA
260 TGCCAGTAGCCATTAAAGTGTCTGAAA-TGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * * ** *
16179713 CACTTCGAGTTTTTAGCTGGATATTTTTGTTCACACCAACAAAAATACAAGGATCACATCTACCA
324 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* * ** * * *
16179778 GGTTTGCGGTGAAAACTCCTTCTGAAAAAATTTTAAGAAATCTCGAACCGCAAAAAGTTTCAAAA
389 AGTTTGGGGCCAAAACTCCTTC-CAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAA
16179843 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
453 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* *
16179908 GTATGAATTTACAAGCCATAAAAATGGAATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCA
518 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCA
*
16179973 CCTACCACCCTATCGATCTTA-GGCTTGCGCATCCCGTCTCTCTGGCC-G--GCGTAGT----GC
583 CCTACCACCCTATCGATC-CACGGCTTGCGCATCCCGTCTCTCTGGCCAGTAGCG-AGTGCCCGC
* * * * * *
16180030 CTGCCCGCCCGCTCGTTTTGTCGGTTGGATTAGGCATACAGAGTTCATTGCCAGTCTAAGATTGG
646 CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* * * * * * *
16180095 ATCAGACTGAGGGTTACGGTAGCAGGATCGGCAGCACGTAGAGGGGGACCCGACTGATCCCCGGC
711 ACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAAGGGGACCCGACCGATCCCCGGC
* * * * * * * * *
16180160 TTACGCATCCCGCCCCTTTGGCTGGCCGAGTGCCCGCATGCTCATTTCGTGGGTTGGCTTTGGCA
776 TGACGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCA
** * *
16180225 TACGGAGTTCATTC-CTAGTGTAAG-A-TCGGA-C--G
841 TACGGAGTTCATTCTCTAGTCAAAGTATTCGAATCAAC
* * * * *
16180257 GACCAAGGGTTGCAGTAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCA-TTTTCTTCACCG
1 GACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCG
* * **
16180321 GGGCACCAT--T----G---C--CAGAGAACCTGACCGACGACATTGGGG-TTCTGGTGATCGGG
66 GGGCACCATCGTCGGAGCATCGTCAGAGAACCTGATCGACGGCATTGGGGTTTC-GACGATCGGG
* * *
16180374 GGG--GGGGTGTGTGCG--CATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATAGTGGCCCCC
130 GGGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
**
16180435 TATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
195 TATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * * *
16180500 TGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAGTGGTCACAAAATGTTGTAC
260 TGCCAGTAGCCATTAAAGTGTCTGAAATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* *
16180565 A---C---TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAAAAGGATCACCTCTACCAA
325 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* * * * **
16180624 GTATT-GGGCCAAAAATCCTTCCGAAAAAATTCTAAAAAATCAC-AAGCCACAAAAAGTTTTGAA
390 GT-TTGGGGCCAAAACTCCTTCC-AAAAAATTTTAAAAAATCCCGAA-CCGCAAAAAGTTTCAAA
* * * *
16180687 AATCGTGAAAAATAGAAAGCGAGTCGTCTTGCCATAAAATTTCACGTGAAGGCTTAAGGGACCAT
452 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
*
16180752 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCC
517 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCC
* * * * * * *
16180817 ACCTACCACTCTATCGATGCACGGCTTGTGCATTCCGTCTCTTTAGCC-G--GCTAGTGCCCGCC
582 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGTAGCGAGTGCCCGCC
* * * * *
16180879 TGCCCGCCCACTCGTTTCGTTGGTTGGCTTAGGCTTACGGAGTTCATTCCCAGTCTAAGATTGGA
647 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * * * * *
16180944 TCGGACCCAGGGTTGCGACAGCTGGATCGGTAGCACGCAG-AGGGGACCCGACCGATCCCCGGCT
712 CCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAAGGGGACCCGACCGATCCCCGGCT
* * * * ** *
16181008 TACGTATCCCT-TCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTTATAGGTTGACTTAGGCA
777 GACGCAT-CCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCA
* * **
16181072 TTCGGAGTTCATTCCCAGTCTAAG-CATTTGGAGTTCATTCCCAGTCTAAGATCGGATTG
841 TACGGAGTTCATT--C--TCT-AGTCA----AAG-T-ATT--C-G----A-ATC--A-AC
* * * *
16181131 GACCGAGGTTTGTGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
1 GACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCG
*
16181196 GGGCACCA---TC---G--TCG---GAGAACCTGATCGACGGCATTGGGGTTCCGACGATCGGGG
66 GGGCACCATCGTCGGAGCATCGTCAGAGAACCTGATCGACGGCATTGGGGTTTCGACGATCGGGG
* * * * *
16181250 GGACCGGGGGGGTGTACGCACATGATGTACGATGGGTGCTGCTACTTGGCCCTTATATTGGGCCC
131 GG--CTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* * *
16181315 CTATCCCTCATCAAACCTTAAGAACTCGCACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTG
194 CTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* * *
16181380 TTGCCAGTAGCTATTAAAGTGTCTGAAATAGG-GACACTTTTTTCAAATGATCACAAAATCTTGT
259 CTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGAGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * * *
16181444 ACACTTTGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAAAAAAAATACAAGGGTCACGTCTACC
323 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
** * * * *
16181509 AAGTTTGGTTCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCTCAAAAATTTTCAAT
388 AAGTTTGGGGCCAAAACTCCTTCC-AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAA
* * *
16181574 AATCATGAAAAATAGAAAACGAGTCATCTTGCCATGTAACTTCACGTGAAGGCTTAAGGGACCAC
452 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* * * *
16181639 TGTATGAATTTAAAAGCCATAAAAATAGCATTGGCATGCAGAAATATGAAGATGCGCCTAAACCC
517 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCC
*
16181704 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCA--A-CGTAGTGCCTGC
582 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGTAGCG-AGTGCCCGC
* * * * * **
16181766 CTGCCCGCCTGCTCTTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTATGATTAG
646 CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* * * * * * *
16181831 ACCACACCGAGGATTGTGGTAGCAAGATTGGCAGCACGCAG-AGAGGGACCCGACCGATCCCCGA
711 ACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAAG-GGGACCCGACCGATCCCCGG
* * * *
16181895 CTTG-CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAAGCTCGTTTCGTGCGTTGACTTAGG
775 C-TGACGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGG
**
16181959 CATACGGAGTTCATTCCCAGTCTAAACATACGGAGTTCATTCCCAGTCTAAGATCAGACC
839 CATACGGAGTTCATT--C--TCTAGTCA-A---AG-T-ATT--C-G----A-ATCA-A-C
* * ** * *
16182019 GGACCGAGGGTTGTGGCAGCACATATTGGGCTCGGGCATGTGCTGGTGCCTCATTTTTCTTCACC
1 -GACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATC
* ** * * **
16182084 GGGGCACCATCGCCGGAGCATCACCGGAGAACCTGA-CTGGCGGCATTGGGG-TTCTGGGGATCG
65 GGGGCACCATCGTCGGAGCATCGTCAGAGAACCTGATC-GACGGCATTGGGGTTTC-GACGATC-
* * *
16182147 GGGGGGCCGAGGGGGGTGTGCGCACGA-GATGTGAGATGGTTGCTGGTACTTGGCCCTTATATTG
127 GGGGGG-C-TGGGGGGTGTGCGCAC-ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* *
16182211 GCCCCCTATCCCTCATCAAACCTTGACAACTCACACCCCCTTAAAGAGAATTTGAGATTTTACAG
189 GCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* * * * *
16182276 GTTTGCCGCCAGCAGCCATTAAAGTCTCTGAAATGGGGACACTTTTTTTAAATGGTCACAAAATC
254 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGAGACACTTTTTTCAAATGGTCACAAAATC
* * * * *
16182341 TTGTACACTTCGATTTTTTGGCTGAATTTTTTTATGCACT-CCAAAAAAAATACAGGGATCACGT
319 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA-TGCCAACAAAAATACAAGGATCACGT
* * * * *
16182405 CTTCCAAGTTTGGGGCCAAAACACCTTCCAAAAAAATTTTTAAAAATCCCGAACAG-AAAAAATT
383 CTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTT
** * * * * *
16182469 TTGAAAATCGTG----ATAGAAAATGAGTCATCTTGCCATTAAACTTCACGTGAAGGCTTAAGAG
447 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
*
16182530 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
512 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTA
*
16182595 AACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCC-G-A-CGTAGT-
577 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGTAGCG-AGTG
* *
16182656 ---GCCCGCCCGCCCGCTCGTTCCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
641 CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * * *
16182718 ATCGGACCAGACCGAGGGTTGTGGCAGCAGGATCGGTACCACACAGAGGGGGACCCGGCCAATCC
706 ATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAAGGGGACCCGACCGATCC
* * * * *
16182783 CCGACTTACGCATCCTGCCCCTCTGGCCGACTGAGCGCCGGCACGCTCATTTTGTGGGTTGACTT
771 CCGGCTGACGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTT
*
16182848 AGGCATACGGAGTTCATTCCCAGTCTAAG-CATACGGAGTTCATTCCCAATCAAAGATC
836 AGGCATACGGAGTTCATT--C--TCT-AGTCA-A---AG-T-ATT-CGAATC--A-A-C
* *
16182906 GAATCAGTCCGAGGGTTGCGGTAGCACATGTTGGGCTCGGGCATATGCTGGTGCCACATTTTTCT
1 G----A--CCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCT
* * * * *
16182971 TCGTCAGGGCACCATCGTCGGAGCATCGTCAGAGAACCTGACCGGCGGCATTGGGG-TTCCAGCG
60 TCATCGGGGCACCATCGTCGGAGCATCGTCAGAGAACCTGATCGACGGCATTGGGGTTTCGA-CG
* **
16183035 ATCGGGGGGACTAGGGGGTGTGCGCACATGATGTGCGATGGGTATTGGTACTTGGCCCTTATATT
124 ATCGGGGGG-CTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
*
16183100 GGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACA
188 GGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
*
16183165 GGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAAT-GAGGACACTTTTTTCAAATGGTCACAAAA
253 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGA-GACACTTTTTTCAAATGGTCACAAAA
* * * *
16183229 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTACATGCCAACAAAAATACAGGGATAATG
317 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
* * * * * *
16183294 GCCACCAAGTTTGGGGCTAAAACTCCTTCCGAAAAATTTTAAAAAATCCCGAACTGCAAGAAGTT
382 TCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTT
* * * *
16183359 TGAAAAATCATGAAAAATAGAAAACGAGTTGTGTTGCCATGAAACTTCAAGTGAAGGCTTAAGGG
447 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
** *
16183424 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTACCTA
512 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTA
* *
16183489 AACCCACCTACCACCCTATCGATCCACGGCTTACGCATCTCGTCTCTCTGGCCGGAGTAGTTCCC
577 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC--AGTAG----C
*
16183554 GCACGCTCGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
636 G-A-G-T-GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* * * * * * * *
16183619 CAGTCTAAGATCAGACCTGACCGAGGGTTGTGGTAGCAAGATCGACAGCACGTAGAATGGGACCC
697 CAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAAGGGGACCC
** * *
16183684 GGTCGATCCCCGGCATGA-GCATCCTGCCCCTTTGGCCAGCTGAGCGCCCGCACGCTCATTTCGT
762 GACCGATCCCCGGC-TGACGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGT
16183748 GGGTTGACTTAGGCATACGGAGTTCATT-TCTAGTCAAAG-ATT-GAATC-A-
826 GGGTTGACTTAGGCATACGGAGTTCATTCTCTAGTCAAAGTATTCGAATCAAC
* *
16183796 GACCGAGGGTTGTGGTAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCATCG
1 GACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCG
* * *
16183861 GGGCACCATCATCGGAGCATCGTCAAAGAACCTGATCGACGGCGTTGGGGTTTCGACGATCGGGG
66 GGGCACCATCGTCGGAGCATCGTCAGAGAACCTGATCGACGGCATTGGGGTTTCGACGATCGGGG
*
16183926 GGCTGTGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
131 GGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
*
16183991 ATCCCTCATCAAACCTTGATAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
196 ATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
*
16184056 GCCAGTAGCCATTAAAGTGTCTGAAATGGAGATACTTTTTTCAAATGGTCACAAAATCTTGTACA
261 GCCAGTAGCCATTAAAGTGTCTGAAATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
*
16184121 CTTCGAGCTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
326 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
16184186 TTTGGGGCCAAAACTCCTTCCAAAAGAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAAT
391 TTTGGGGCCAAAACTCCTTCCAAAA-AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAAT
*
16184251 CATGAAAAATAGAAAACGAGTCGTCTTGTCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
455 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* * **
16184316 ATGAATTTACAGGCCATAAAAATGGCATTGGCACGTAGAAATATGAATTTGTGCCTAAACCCACC
520 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACC
* * * *
16184381 TACCACCCTATCGATCCACAGCTGGCGCATCCCATCTCTCTGGCC-G-A-CGTAGTGCCCACCCG
585 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGTAGCG-AGTGCCCGCCCG
*
16184443 CCCGCACGCTCGCTCGTTTCGTCGGTTGGCTAAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
649 CCCG--C-C-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * ** * * * *
16184508 GACCAGACCGAGGGTTACGACAGTAGGATCGAAAGCACACAGAGGGGGACCCAACCGATACCCGG
710 GACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAAGGGGACCCGACCGATCCCCGG
* * * * * *
16184573 ATTG-CGCATCC-CCCCCTCTGGCCGGCTAAGCACCCGCAGGCTCGTTTCGTGGGTTGACTTAGG
775 -CTGACGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGG
* *
16184636 CATACGGAGTTCATTCCCAATCTAAGCATACGAAGTTCATTTCCAATCAAAGATC
839 CATACGGAGTTCATT--C--TCT-AG--T-CAAAG-T-A-TTCGAATC--A-A-C
* * ***
16184691 GAATCGGATCGAGGGTTACGGTAGCACATACTGGGCTCGGGCATGTGCTGGTGCCGTTTTTTTCT
1 G-A-C----CGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCT
** * * * * *
16184756 TCATCGGGGTGCCATTGTCAGAGCATCGTCGGAGAACCTGATCGACGGCATTGGGGTTCCGGCGA
60 TCATCGGGGCACCATCGTCGGAGCATCGTCAGAGAACCTGATCGACGGCATTGGGGTTTCGACGA
* * *
16184821 TCGGCGGGGTTGGGGGGTGTGCGCACATGATGTACGATGGATGCTGGTACTTGGCCCTTATATTG
125 TCGG-GGGGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* *
16184886 GCCCCCTATCCCTCCTCAAACCTTGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAG
189 GCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
*
16184951 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGAGACATTTTTTTCAAATGGTCACAAAATC
254 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGAGACACTTTTTTCAAATGGTCACAAAATC
16185016 TTG
319 TTG
16185019 CCATGAAACT
Statistics
Matches: 4112, Mismatches: 485, Indels: 296
0.84 0.10 0.06
Matches are distributed among these distances:
844 6 0.00
845 259 0.06
846 2 0.00
847 81 0.02
848 95 0.02
849 1 0.00
850 3 0.00
851 162 0.04
852 2 0.00
853 13 0.00
855 5 0.00
856 32 0.01
858 1 0.00
859 1 0.00
860 1 0.00
861 1 0.00
862 1 0.00
863 1 0.00
867 18 0.00
868 45 0.01
869 1 0.00
872 12 0.00
873 1 0.00
874 51 0.01
875 117 0.03
876 112 0.03
879 10 0.00
880 4 0.00
881 164 0.04
882 2 0.00
883 264 0.06
884 316 0.08
885 7 0.00
886 5 0.00
887 266 0.06
888 105 0.03
889 211 0.05
890 263 0.06
891 10 0.00
892 309 0.08
893 4 0.00
894 153 0.04
895 2 0.00
896 170 0.04
897 4 0.00
898 4 0.00
899 3 0.00
900 46 0.01
901 381 0.09
902 186 0.05
903 3 0.00
904 4 0.00
905 6 0.00
910 184 0.04
911 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (878 bp):
GACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCG
GGGCACCATCGTCGGAGCATCGTCAGAGAACCTGATCGACGGCATTGGGGTTTCGACGATCGGGG
GGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
ATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
GCCAGTAGCCATTAAAGTGTCTGAAATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
TTTGGGGCCAAAACTCCTTCCAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATC
ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGTAGCGAGTGCCCGCCCGCC
CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG
ACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAAGGGGACCCGACCGATCCCCGGCTGACG
CATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGG
AGTTCATTCTCTAGTCAAAGTATTCGAATCAAC
Found at i:16186849 original size:26 final size:26
Alignment explanation
Indices: 16186813--16186863 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
16186803 ATGACTTAGG
*
16186813 CATACGGAGTTCATTCCCAGTCTAAC
1 CATACAGAGTTCATTCCCAGTCTAAC
16186839 CATACAGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATTCCCAGTCTAA
16186864 GATCGGACCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAC
Found at i:16189472 original size:26 final size:26
Alignment explanation
Indices: 16189432--16189489 Score: 107
Period size: 26 Copynumber: 2.2 Consensus size: 26
16189422 CATGGGTTGA
16189432 CTAAGGCATACGGAGTTCATTCCCAGT
1 CTAA-GCATACGGAGTTCATTCCCAGT
16189459 CTAAGCATACGGAGTTCATTCCCAGT
1 CTAAGCATACGGAGTTCATTCCCAGT
16189485 CTAAG
1 CTAAG
16189490 ATCAGACCGA
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 27 0.87
27 4 0.13
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
CTAAGCATACGGAGTTCATTCCCAGT
Found at i:16190372 original size:26 final size:26
Alignment explanation
Indices: 16190342--16190413 Score: 117
Period size: 26 Copynumber: 2.8 Consensus size: 26
16190332 TGGGCATATG
*
16190342 AAGTTCATTCCCAGTCTAAGCATACG
1 AAGTTCATTCCCAGTCTAAGCATACA
* *
16190368 GAGTTCATTCCCAGTATAAGCATACA
1 AAGTTCATTCCCAGTCTAAGCATACA
16190394 AAGTTCATTCCCAGTCTAAG
1 AAGTTCATTCCCAGTCTAAG
16190414 ATCAGACCGG
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
AAGTTCATTCCCAGTCTAAGCATACA
Found at i:16192829 original size:877 final size:873
Alignment explanation
Indices: 16191074--16195393 Score: 5108
Period size: 891 Copynumber: 4.9 Consensus size: 873
16191064 GCCCGGCCGC
* * * * * * *
16191074 CCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCGAAG-AT-C-GGA
1 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACCGAGTTCATTCCCAGTCTAAGTATCCAGCA
* *
16191136 -C-CAGACCGAGGGTTGCGGCAGCACATGCTGGGCTC-AGGCATTTGCTGGTGCCGCATTTTTCT
66 TCACAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGA-GCA-TTGCTGGTGCCGTATTTTTCT
* * *
16191198 TCG-CTGGGGCACCATCGCCGCAGCATCGCCAGAGAACCTAACCGGCGGCATTGGGGTTCCGGCG
129 TCGTC-GGGGCACCATCGTCG-AG-ATC-TC-GAGAACCTGACCGGCGGCATTGGGGTTCCGGCG
* *
16191262 AACGGGGGGCC--GGGGGGTGTGCGCACATGATGTGC-AGTGGGTGCTGGTACTTGGCCCTTATA
189 ATCGGGGGGCCGGGGGGGGTGTGCACACATGATGTGCGA-TGGGTGCTGGTACTTGGCCCTTATA
* * **
16191324 TTGGCCCCCTATCCCTCATTAAACCTCCAGAACTCACACCCCCTTAAAGAGCATTTGTCATTTTA
253 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* *
16191389 CAGGTTTGCTGCCAGTAGCCATTAACGTGTCTG-AATGGGGACACTTTTTTCAAGTGGTCACAAA
318 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* *
16191453 ATCTTGTACACTTCGACTTTTTAGCTGAATATTTTTGTGCATGCCAACAAAAATACAAGGATCAC
383 ATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTTTGCATGCCAACAAAAATACAAGGATCAC
* * * * *
16191518 GTCTACCAAGTTTTGGGCCAAAAC-ACCTTCCAAAAAAATTTTAAAATATCCCGAACCACAAAAA
447 GTCTACCAAGTTTGGGGCCAAAACTA-CTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAA
*
16191582 GTTTTGAAAATCATGAAAAATAGAAAACGAGT-AGTCTTGCCATGAAACTTCACATGAAGGCTTA
511 GTTTTGAAAATCATGAAAAATAGAAAACGAGTCA-TCTTGCCATGAAACTTCACGTGAAGGCTTA
* * * * **
16191646 ATGGACCATTTTATGAATTTACAAGCGATAAAATTATCATTGGCA--CATAGAAATATGAAGATG
575 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC-TAGAAATATGAAGATG
* * *
16191709 TGCCTAAACCCA-CTGACCACCCGATCGATCCACGGCTTGCGCGT-CTCGTCTCTCTGGCCGACG
639 TG-CTAAACCCACCT-ACCACCCTATCGATCCACGGCTTGCGCATCCT-GTCTCTCTGGCCGGCG
* * * *
16191772 TAGTGCT-CGCC--CGCCCACCCGCTCGTTTTGTCGGTTGGCTTAGGCATACAGAGTTCATTCCC
701 TAATGCTGC-CCGTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * * ** * ** * * *
16191834 AGTCTAATATC-GAATCGGACTGAGGGTTACGGTAGCAGGATCGGCAGCATGTAGAGGGGGACCC
765 AGTCTAAGATCGGACT-GAACCAAGGGTTACGGCAGCAGGATCGATAGCACGCAAAGGGGGACCC
** * *
16191898 GATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCCGCTAAGCG
829 GATCGATCCCCAACTTGCGCATCCCGCCCCTCTGGCTCGCTGAG-G
*
16191944 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-CAG-
1 -CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACCGAGTTCATTCCCAGTCTAAGTATCCAGC
* *
16192006 A-C-CAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTAGTTTTCT
65 ATCACAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGAGCAT-TGCTGGTGCCGTATTTTTCT
** * * *
16192069 TCACCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACTGGCGGGATTGGGGTCCCGGCGA
129 TCGTCGGGGCACCATCGTC-GAG-ATC-TC-GAGAACCTGACCGGCGGCATTGGGGTTCCGGCGA
*
16192134 TCAGGGGGGCCGTGGGGGGGGTGTGCACACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTAT
190 TC-GGGGGGCC--GGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* * * *
16192199 ATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCATTAAAGAGCATTTCAGATTTC
252 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
*
16192264 CCAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
317 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* * *
16192329 AATCTTGTACACTTCTAGTTTTTAGCTGAATGTTTTTTTCCATGCCAACAAGAATACAAGGATCA
382 AATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTTTGCATGCCAACAAAAATACAAGGATCA
* *
16192394 CGTCTACCAAGTTTGGGGCCAAAACTACTTCCGAAAAAATTTTAAAACATCCTGAACTGCAAAAA
446 CGTCTACCAAGTTTGGGGCCAAAACTACTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAA
* *
16192459 GTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACATCACGTGAAGGCTTAA
511 GTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAA
16192524 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCTA-AAATATGAAGATGTG
576 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCTAGAAATATGAAGATGTG
* * *
16192588 CTGAAATCCACCTACCACCCTATCGATCGACGGCTTGCGTATCCTGTCTCTCTGGCCGGCGTAAT
641 CT-AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGGCGTAAT
16192653 GACTGCCCGGTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
705 G-CTGCCC-GTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
*
16192718 CTAAGATCGGACTGAACCAAGGGTTGCGGCAGCAGGATCGATAGCACGCAAAGGGGGACCCGATC
768 CTAAGATCGGACTGAACCAAGGGTTACGGCAGCAGGATCGATAGCACGCAAAGGGGGACCCGATC
*
16192783 GATCCCCAACTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCG
833 GATCCCCAACTTGCGCATCCCGCCCCTCTGGCTCGCTGAG-G
* * *
16192825 CACGCACGCTCGTTTCATGGGTTGACTTAGGCATACCAAGTTCATTCCCAATCTAAGCATATGGT
1 C-CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACCGAGTTCATTCCCAGTCT----A-A----
* * *
16192890 GTTCATTCCCAGTCTGACATCGAACTAGATCGAGGGTTACGGCAGCACATGCTAGGG-TTGGGCA
56 G-T-A-T-CCA----G-CATC--AC-AGACCGAGGGTTACGGCAGCACATGCT-GGGCTCGAGCA
* * *
16192954 TTTCTGGTGCCACT-TTTTTCTTCGTCGGGGCACCA---TC--G-T-TCGAGAACCTGACCGGCC
108 TTGCTGGTGCC-GTATTTTTCTTCGTCGGGGCACCATCGTCGAGATCTCGAGAACCTGACCGGCG
* * *
16193011 GCATTGGGGTTCTGGCGATCGGGGGGGC-GGGGGAGTGTGCACACATGATGTGCGATGGGTGCTG
172 GCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTG
* *
16193075 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTAAAAA
237 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* *
16193140 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTAAAATGGGGACACTTTT
302 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * *
16193205 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATGTTTTTGTCCATGCCAACA
367 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTTTGCATGCCAACA
*
16193270 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTACTTCCGAAAAAATTTTAAAACAT
431 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTACTTCCGAAAAAATTTTAAAAAAT
* * *
16193335 CCTGAACTGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACAT
496 CCTGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTT
16193400 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG-TAG
561 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCTAG
* * * * *
16193464 AAATCTAAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCATGGCTTGCGCATCCCGTCTC
626 AAATATGAAGATGTG-CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTC
** * * *
16193529 TCAAGCCGGCG-CA-G-TGCCCGCTCGCCCGTCCGCTCGTTTCGTCGATTGGCTTAGGCATACGG
690 TCTGGCCGGCGTAATGCTGCCCG-TCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* * * * * * * * * *
16193591 AGTTCATTCCTAGTCTAAAATCAGACCGGACCGAGGTTTACGACAGCAGGATCGGTAGCACGCAG
754 AGTTCATTCCCAGTCTAAGATCGGACTGAACCAAGGGTTACGGCAGCAGGATCGATAGCACGCAA
* ** *
16193656 AGGGGGACCC-AGCCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGAC-CGCTGAGTG
819 AGGGGGACCCGA-TCGATCCCCAACTTGCGCATCCCGCCCCTCTGG-CTCGCTGAG-G
*
16193712 CCGGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAGA
1 CC-GCACGCTCGTTTCGTGGGTTGACTTAGGCATACCGAGTTCATTCCCAG--T---C-T--A-A
** **
16193777 GTTCATTCCCAGTCTAGGATCAGACCGGATTGAGGGTTACGATAGCACATGCTGGGCTCGAGCAT
56 G-T-A-T-CCAG-C-ATCA-CAGACC-----GAGGGTTACGGCAGCACATGCTGGGCTCGAGCAT
* * * * * *
16193842 GTGCTGGTGCAGAATTTTTCTTCGTCGGGGCACAATCGCCGGAGTATCGCTGGAGAACCTGATCG
109 -TGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTC-GAG-AT--CTCGAGAACCTGACCG
* * * ** * * *
16193907 ACGGGA-T-GGGTTTCGATGATCAGGGGACC--GGGGGGTGTGCGCACATGATGTGCGATGGGTG
169 GCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGGTGTGCACACATGATGTGCGATGGGTG
*
16193968 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACTCCCTTA
234 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* *
16194033 AAGAGCACTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGGGACACT
299 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * *
16194098 TTTTTCAAATGGTCACAAAATCTTGTACATTTTGAGTTTTTAGCCGAATTTTTTTGTGCATGCCA
364 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-TGCATGCCA
* * * *
16194163 AAAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACGTA-TTTCAAAAAAATTTTAAA
428 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-TACTTCCGAAAAAATTTTAAA
** * * * **
16194227 AAATCCCT-AACCGCAAAAAGTTTCAAAAATTATGACAAATAGAGAACGAGTTGTCTTGCCATGA
492 AAAT-CCTGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGA
16194291 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
556 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * * *
16194356 GCT-GAAATATGAAGTTGTGCTGAAATCCACCTACCACCTTATCGATCCATGGCTTGCGCATCCT
621 GCTAGAAATATGAAGATGTGCT-AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCT
* * * * *
16194420 GTCTCTCTGGCCGACGTAGTGACTGCCCGGCCGCCCACCCGCTCATTTCGTCGGTTGGCTTAGGC
685 GTCTCTCTGGCCGGCGTAATG-CTGCCC-GTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
*
16194485 ATACGGAGTTCATTCCCAGTCTAAGATCGGACTGAACCAAGGGTTGCGGCAGCAGGATCGATAGC
748 ATACGGAGTTCATTCCCAGTCTAAGATCGGACTGAACCAAGGGTTACGGCAGCAGGATCGATAGC
*
16194550 ACGCAAAGGGGGACCCGATCGATCCCCAACTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCG
813 ACGCAAAGGGGGACCCGATCGATCCCCAACTTGCGCATCCCGCCCCTCTGGCTCGCTGAG-G
* * *
16194612 CACGCACGCTCGTTTCATGGGTTGACTTAGGCATACCAAGTTCATTCCCAATCTAAGCATATGGT
1 C-CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACCGAGTTCATTCCCAGTCT----A-A----
* * *
16194677 GTTCATTCCCAGTCTGACATCGAACTAGATCGAGGGTTACGGCAGCACATGCTAGGG-TTGGGCA
56 G-T-A-T-CCA----G-CATC--AC-AGACCGAGGGTTACGGCAGCACATGCT-GGGCTCGAGCA
* * *
16194741 TTTCTGGTGCCACT-TTTTTCTTCGTCGGGGCACCA---TC--G-T-TCGAGAACCTGACCGGCC
108 TTGCTGGTGCC-GTATTTTTCTTCGTCGGGGCACCATCGTCGAGATCTCGAGAACCTGACCGGCG
* * *
16194798 GCATTGGGGTTCTGGCGATCGGGGGGGC-GGGGGAGTGTGCACACATGATGTGCGATGGGTGCTG
172 GCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTG
* *
16194862 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTAAAAA
237 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* *
16194927 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTAAAATGGGGACACTTTT
302 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
*
16194992 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAATA
367 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-TGCATGCCAACA
* *
16195057 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAGTTTAAAAAAG
431 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTACTTCCGAAAAAATTTTAAAAAA-
* * * * *
16195122 T-CTCGAACAGTAAAAAGTTTTAAAAATCAAGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
495 TCCT-GAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAAC
* * **
16195186 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCTTTGCCACAC-
559 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCT
* * *
16195250 ATG-AATATAAAGATGTACCTAAACCCACCTACCACCCTATCGATCCTA-GGCTTGCGCATCCCG
624 A-GAAATATGAAGATGT-GCTAAACCCACCTACCACCCTATCGATCC-ACGGCTTGCGCATCCTG
* ***
16195313 TCTCTCTAGCCGGCGT-A-G-TG--C-TCGCCCGCCCGCTCGTTTAACCGGTTGGCTTAGGCATA
686 TCTCTCTGGCCGGCGTAATGCTGCCCGTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
*
16195372 CAGAGTTCATTCCCAGTCTAAG
751 CGGAGTTCATTCCCAGTCTAAG
16195394 CATACGGAGT
Statistics
Matches: 3007, Mismatches: 316, Indels: 239
0.84 0.09 0.07
Matches are distributed among these distances:
870 1 0.00
871 164 0.05
872 12 0.00
876 137 0.05
877 309 0.10
878 12 0.00
879 2 0.00
880 1 0.00
881 185 0.06
882 8 0.00
883 3 0.00
884 54 0.02
885 1 0.00
886 8 0.00
887 226 0.08
888 47 0.02
889 3 0.00
890 23 0.01
891 749 0.25
892 178 0.06
893 7 0.00
894 10 0.00
895 39 0.01
896 451 0.15
897 21 0.01
898 4 0.00
899 45 0.01
900 225 0.07
901 6 0.00
902 1 0.00
903 4 0.00
904 3 0.00
905 5 0.00
906 28 0.01
907 32 0.01
908 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (873 bp):
CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACCGAGTTCATTCCCAGTCTAAGTATCCAGCA
TCACAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGAGCATTGCTGGTGCCGTATTTTTCTTC
GTCGGGGCACCATCGTCGAGATCTCGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGG
GGCCGGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
CACTTCGAGTTTTTAGCTGAATTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
GTTTGGGGCCAAAACTACTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAA
TCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCTAGAAATATGAAGATGTGCTAAACCCAC
CTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGGCGTAATGCTGCCCGTCG
CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACT
GAACCAAGGGTTACGGCAGCAGGATCGATAGCACGCAAAGGGGGACCCGATCGATCCCCAACTTG
CGCATCCCGCCCCTCTGGCTCGCTGAGG
Found at i:16193778 original size:26 final size:26
Alignment explanation
Indices: 16193742--16193792 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
16193732 GTTGACTTAG
16193742 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16193768 GCATACAGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATTCCCAGTCTA
16193793 GGATCAGACC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16195403 original size:26 final size:26
Alignment explanation
Indices: 16195367--16195419 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16195357 GTTGGCTTAG
16195367 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
16195393 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16195419 G
1 G
16195420 ATCAGACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16195532 original size:11 final size:11
Alignment explanation
Indices: 16195500--16195524 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
16195490 ACCGGGGCAC
16195500 CATCGCCGGAG
1 CATCGCCGGAG
16195511 CATCGCCGGAG
1 CATCGCCGGAG
16195522 CAT
1 CAT
16195525 TGTCGGAGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.20, C:0.36, G:0.32, T:0.12
Consensus pattern (11 bp):
CATCGCCGGAG
Found at i:16196094 original size:12 final size:12
Alignment explanation
Indices: 16196077--16196102 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
16196067 CCGACGTAGT
16196077 GCCCGCTCGCCC
1 GCCCGCTCGCCC
16196089 GCCCGCTCGCCC
1 GCCCGCTCGCCC
16196101 GC
1 GC
16196103 TCGTTTCGTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.65, G:0.27, T:0.08
Consensus pattern (12 bp):
GCCCGCTCGCCC
Found at i:16196803 original size:724 final size:731
Alignment explanation
Indices: 16194782--16196809 Score: 2723
Period size: 724 Copynumber: 2.8 Consensus size: 731
16194772 ACCATCGTTC
* * *
16194782 GAGAACCTGACCGGCCGCATTGGGGTTCTGGCGATCGGGGGGGCGGGGGAGTGTGCACACATGAT
1 GAGAACCTGACCGGCAGCATT-GGGTTCTGGCGATCGGGGGGCCGGGGGGGTGTGCACACATGAT
16194847 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
65 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
16194912 CACACCCCCTAAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTAA
130 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGA
*
16194977 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
195 AATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
*
16195042 TTGTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
260 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * *
16195107 AAAA-GTTTAAAAAAGTCTCGAACAGTAAAAAGTTTTAAAAATCAAGAAAAATAGAAAACGAGTC
325 AAAATG-TTAAAAAA-TCCCGAACCGTAAAAAG-TTTAAAAATCATGAAAAATAGAAAACGAGTC
16195171 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
387 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
16195236 TGGCTTTGCCACACATGAATATA-AAGATGTACCTAAACCCACCTACCACCCTATCGATCCTA-G
452 TGGCATTGGCACACA-GAA-ATAGAAGATGTACCTAAACCCACCTACCACCCTATCGATCC-ACG
* * * * * *
16195299 GCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCTCGCCCGCCCGCTCGTTTAACCGGTTGGCT
514 GCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCGCCCGTCTAACCCGCTCGCT
16195364 TAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTA
579 TA-GCATACAGAG-T--TTCCCA-TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTA
* * * * *
16195429 GACCGAGGATTGTGGTAGCACATGTTGGGCTCAGGCATGTGCTGGTGCTGTATTTTTCTTCACCG
639 GACCGAGGATTGTGGCAGCACATGCTGGGCTCAGGCATGTGCAGGTGCCGCATTTTTCTTCACCG
*
16195494 GGGCACCATCGCCGGAGCATCGCCGGAGCATTGTCG
704 GGG--CCA---CC---GCATCGCCGGAGCATTGCCG
* * * * * * *
16195530 GAGAACCTGACCGGCGGCATTGGGCTTCCGACGATCGAGGGGCC-GGGGGGTGTGCGCACCTGAA
1 GAGAACCTGACCGGCAGCATTGGG-TTCTGGCGATCGGGGGGCCGGGGGGGTGTGCACACATGAT
* *
16195594 GTGCGATAGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCGAGAACT
65 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
*
16195659 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
130 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGA
*
16195724 AATGGGGAC-TCTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-CATTTT
195 AATGGGGACAT-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * **
16195787 TTTGTGCATGCTAACAAAAATAAAAGGATCACGTCTACCAAGTTT-GGGCGCAAAACTCCTTCTA
259 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC-CAAAACTCCTTCCG
*
16195851 AAAAAAT-TTCAAAAAATCCCGAACCGTAAAAAGTTTCAAAATTCATGAAAAATAGAAAACGAGT
323 AAAAAATGTT-AAAAAATCCCGAACCGTAAAAAGTTT-AAAAATCATGAAAAATAGAAAACGAGT
* * *
16195915 TGTCTTGCCATGAAACTTCACGTCAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAA
386 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * *
16195980 ATGGCATTGGCACATAGAAATATGAAGATGTGCATAAACCCACCTACCACCCTATCGATCCACGG
451 ATGGCATTGGCACACAGAAATA-GAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * **
16196045 CTTGCGCATCCCATCTCTCTGGCCGACGTAGTGCCCGCTCGCCCGCCCG-CTCGCCCGCTCG-TT
515 CTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCGCCCGTCTAACCCGCTCGCTT
* * ** * * * *
16196108 -TCGT-C-G-G-TTGGC-T-TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-TCGGATCG
580 AGCATACAGAGTTTCCCATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-AGACCG
* * **
16196165 AGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCAGGTGCCGCATTTTTCTTCGTCGGGG-C
644 AGGATTGTGGCAGCACATGCTGGGCTCAGGCATGTGCAGGTGCCGCATTTTTCTTCACCGGGGCC
16196229 A-C-CATCGCCGGAGCATTGCCG
709 ACCGCATCGCCGGAGCATTGCCG
* * * *
16196250 GAGAACTTGACCGACAGCATTAGGGTTTTGGTGATCGGGGGGCCGGGAGGGGGTGTGCACACATG
1 GAGAACCTGACCGGCAGCATT-GGGTTCTGGCGATCGGGGGGCC-GG-GGGGGTGTGCACACATG
* * * *
16196315 ATGTGTGGTGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAA
63 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * * * * *
16196380 CTCACATCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTCCTTCTAGTAGCCATTAAAGTATTT
128 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCT
*
16196445 GAAATGGGGACATTTTTTTCAAATGGTCACAAAATCCTGTACACTGT-GAGTTTTTAGCTGAATT
193 GAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACT-TCGAGTTTTTAGCTGAATT
* * *
16196509 TTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACTAAGTTTGGGGCCAAAAATCCTTCC
257 TTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
*
16196574 GAAAAAATGTTAAAAAATCCCGAACCGCAAAAAGTTTAAAAACTCATGAAAAATAGAAAACGAGT
322 GAAAAAATGTTAAAAAATCCCGAACCGTAAAAAGTTTAAAAA-TCATGAAAAATAGAAAACGAGT
* *
16196639 CATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATAAAA
386 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
** * * * *
16196704 ATGGCATTGGCATGCAGAAATAGGAAGATTTCCCTAAACCCACCTAGCACCTTATCGATCCACGG
451 ATGGCATTGGCACACAGAAATA-GAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * *
16196769 CTTGAGCATCCCGTCTCTCTCGTCGGCATAGTGCCCACCCG
515 CTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCG
16196810 TCTGCTCGTT
Statistics
Matches: 1138, Mismatches: 122, Indels: 64
0.86 0.09 0.05
Matches are distributed among these distances:
720 50 0.04
721 3 0.00
722 1 0.00
723 189 0.17
724 262 0.23
725 6 0.01
728 2 0.00
730 1 0.00
731 92 0.08
732 1 0.00
734 3 0.00
738 1 0.00
739 1 0.00
740 1 0.00
741 2 0.00
743 5 0.00
744 13 0.01
745 201 0.18
746 71 0.06
747 198 0.17
748 35 0.03
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (731 bp):
GAGAACCTGACCGGCAGCATTGGGTTCTGGCGATCGGGGGGCCGGGGGGGTGTGCACACATGATG
TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAA
ATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
AAATGTTAAAAAATCCCGAACCGTAAAAAGTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCT
TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
ATTGGCACACAGAAATAGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCGCCCGTCTAACCCGCTCGCTTAGCATA
CAGAGTTTCCCATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGATTG
TGGCAGCACATGCTGGGCTCAGGCATGTGCAGGTGCCGCATTTTTCTTCACCGGGGCCACCGCAT
CGCCGGAGCATTGCCG
Found at i:16197031 original size:26 final size:26
Alignment explanation
Indices: 16196995--16197047 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16196985 GTTGACTTAG
*
16196995 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATAGAGTTCATTCCCAGTCTAA
16197021 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATATAGAGTTCATTCCCAGTCTAA
16197047 G
1 G
16197048 ATCAAATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATATAGAGTTCATTCCCAGTCTAA
Found at i:16197928 original size:26 final size:26
Alignment explanation
Indices: 16197899--16197951 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16197889 GTTGACTTAG
*
16197899 GCATACGGA-GTTCATTCCCGGTCTAA
1 GCATAC-GATGTTCATTCCCAGTCTAA
*
16197925 GCATACGATGTTCATTCTCAGTCTAA
1 GCATACGATGTTCATTCCCAGTCTAA
16197951 G
1 G
16197952 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGATGTTCATTCCCAGTCTAA
Found at i:16198224 original size:896 final size:889
Alignment explanation
Indices: 16196131--16198678 Score: 3218
Period size: 896 Copynumber: 2.8 Consensus size: 889
16196121 TAGGCATACG
** * * * * * * *
16196131 GAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGACAGCAAATGCTAGGCTCGGGC
* * * * * *
16196196 ATGTGCAGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATTGCCGGAGAACTTGAC
66 ATGTACTGGTGCCGCATTTTTCTTC-T----GCACCA-CG-CGGACCATCGTCGGAGAACCTGAC
* ** ** * * * *
16196261 CGAC-AGCATTAGGGTTTTGGTGATCGGGG-GGCCGGGA-GGGGGTGTGCACACATGATGTGTGG
124 CGACGA-CATTGGGGTTCCGACGATCGGGGAGACC---ACGGGGGTGTGCGCACATGATGTGCGA
*
16196323 TGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACATC
185 TGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACC
* * * *
16196388 CCCTTAAAGAGCATTTCAGATTTTACAGGTTTCCTTC-TAGTAGCCATTAAAGTATTTGAAATGG
250 CCCTTAAAGAGCATTTGAGATTTTACAGGTTT-CTGCTTAGTAGCCATTAAAGTGTCTGAAAT-G
* *
16196452 GGACATTTTTTTCAAATGGTCACAAAATCCTGTACACTGT-GAGTTTTTAGCTGAATTTTTTTGT
313 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT-TCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
16196516 GCATGCCAAAAAAAATACAAGGATCATGTCTACTAAGTTTGGGGCCAAAAATCCTTCCGAAAAAA
377 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCTTTCCGAAAAAA
* * * * *
16196581 TGTTAAAAAATCCCGAACCGCAAAAAGTTT-AAAAACTCATGAAAAATAGAAAACGAGTCATCTT
442 TTTTTAAAAAT-CCGAACCGTAAAAAGTTTCAAAAA-T-TTGAAAAATAGAAAACGAGTCGTCTT
*
16196645 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATAAAAATGGCA
504 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
16196710 TTGGCATGCAGAAATAGGAAGAT-TTCCCTAAACCCACCTAGCACCTTATCGATCCACGGCTTGA
569 TTGGCATGCAGAAATATGAAGATGTTCCC-AAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * ** *
16196774 GCATCCCGTCTCTCTCGTCGGCATAGTGCCCACCCGTCTG---CTCGTTTCATCAATTGTCTTAG
633 GCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGTCTGCCCCTCGTTTCGTCGGTTGGCTTAG
* * * * * **
16196836 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACTTAGCGTCACGGTAGCAGGACCGGCA
698 GCATACGGAGTTCATTTCCAATCTAAGATCGGACCAGACTGAGGGTTACGACAGCAGGACCGGCA
* * * *
16196901 GCACACAGAGGAGGACCCGACCGATCCCCGGCTTGCACATCCTGCCCCTCTGTTCGGCTGAGCGC
763 GCACACAGAGGAGGACCCGACCAATCCCCGGCTTGCACATCCCGCCCCTATGGTCGGCTGAGCGC
* *
16196966 CCGCACGCTCGTTTCGTTGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATATA
828 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATA
*** ** * *
16197028 GAGTTCATTCCCAGTCTAAGATCAAATTGGATTGAGGGTTGCGACAGCAAATGCTGGGCTCGGGT
1 GAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGACAGCAAATGCTAGGCTCGGGC
*
16197093 ATGTACTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGAC
66 ATGTACTGGTGCCGCATTTTTCTTC-T----GCACCA-CG-CGGACCATCGTCGGAGAACCTGAC
* * * * * *
16197158 CGACGACATTGGGGTTCTGGCGATCGGGGGGACCAGGGGGGTGTGTGCACATGATGTGCAATGGG
124 CGACGACATTGGGGTTCCGACGATCGGGGAGACCACGGGGGTGTGCGCACATGATGTGCGATGGG
* * * * * *
16197223 TGCTTGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCGAAAACTAACACCACCT
189 TGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCT
* * *
16197288 TAAAGAGCATTTGAGATTTTATAGGTTCCCTGC-CAGTAGCCATTAAAGTGTCTGAAATAGGGAC
254 TAAAGAGCATTTGAGATTTTACAGGTT-TCTGCTTAGTAGCCATTAAAGTGTCTGAAAT-GGGAC
* * *
16197352 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTAGCTGAATTTTTTTTTGCACG
317 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * *
16197417 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCTTTCCAAAAAAATTTTT
382 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCTTTCCGAAAAAATTTTT
16197482 AAAAATCTCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
447 AAAAATC-CGAACCGTAAAAAGTTTCAAAAATT-TGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
16197547 AAACTTCATGTGAAGGCTTAAGGTACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
510 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* *
16197612 GGCAGAAATATGAAGATGTTCCCAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCT
575 TGCAGAAATATGAAGATGTTCCCAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* *
16197677 GTCTCTCTAGCCGGTGTAGTGCCGACTCGCCCGTCTGCCCACTTGTTTCGTCGGTTGGCTTAGGC
640 GTCTCTCTAGCCGGCGTAGTG-C--C-CGCCCGTCTGCCC-CTCGTTTCGTCGGTTGGCTTAGGC
* * * *
16197742 ATACGGAGTTCATTTCCAATCTAAGATTGGACCAGACCGAGGGTTACGACAGTAGGATCGGCAGC
700 ATACGGAGTTCATTTCCAATCTAAGATCGGACCAGACTGAGGGTTACGACAGCAGGACCGGCAGC
** *
16197807 ACACAGAGTG-GGACCCGACCAATCCTTGGCTTGCACTTCCCGCCCCTATGGTCGGCTGAGCGCC
765 ACACAGAG-GAGGACCCGACCAATCCCCGGCTTGCACATCCCGCCCCTATGGTCGGCTGAGCGCC
* * *
16197871 CGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCGGTCTAAGCATA-C
829 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATA
* * *
16197931 GATGTTCATTCTCAGTCTAAGATCAAACCAGACCGAGGGTTGTGGCAGCACAA-GCTAGGCTCGG
1 GA-GTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGACAGCA-AATGCTAGGCTCGG
** *
16197995 GCATGTTTTGGTGCCGCATTTTTC-T-T-CACCA-G-GGCACCATCGTCGGAGAACCTGACCGGC
64 GCATGTACTGGTGCCGCATTTTTCTTCTGCACCACGCGG-ACCATCGTCGGAGAACCTGACCGAC
* *
16198055 -AGCATTGGGGTTCCGACGATCGGGGCAG-CCACGTGGGTGTGCGCACATGATGTGCGATCGGTG
128 GA-CATTGGGGTTCCGACGATCGGGG-AGACCACGGGGGTGTGCGCACATGATGTGCGATGGGTG
* *
16198118 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCCCATCAAACCTTGAGAACTCACACCCCCTTA
191 CTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTA
*
16198183 AAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGTAGCCTTTAAAGTGTCTGAAATGGAGAC
256 AAGAGCATTTGAGATTTTACAGGTTT-CTGCT--TAGTAGCCATTAAAGTGTCTGAAATGG-GAC
* * *
16198248 ACTTTTTTCAAATAGTCACAAAATCTTGTACAGTTCGAGTTTTTAGCTGAATTTTTTTGTACATG
317 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* *
16198313 CCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCTAAAAATCCTTT-CGAAAAAATTTT
382 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAT-CTTTCCGAAAAAATTTT
*
16198377 TAAAAATACCGAA-CGATAAAAAGTTTCAAAAATCTTGAAAAATAAAAAACGAGTCGTCTTGCCA
446 TAAAAAT-CCGAACCG-TAAAAAGTTTCAAAAAT-TTGAAAAATAGAAAACGAGTCGTCTTGCCA
*
16198441 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCATAAAAATGGCATTGG
508 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * * *
16198506 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTATGGCTTGCACATC
573 CATGCAGAAATATGAAGATGTTCCCAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * *
16198571 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
638 CCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGTCTGCCC-CTCGTTTCGTCGGTTGGCTTAGGCAT
* * *
16198636 ACGGAGTTCA-TTCCTAGTCTAAGATCGAACCGGACTGAGGGTT
702 ACGGAGTTCATTTCC-AATCTAAGATCGGACCAGACTGAGGGTT
16198679 GCTGCAGCAC
Statistics
Matches: 1456, Mismatches: 162, Indels: 71
0.86 0.10 0.04
Matches are distributed among these distances:
891 4 0.00
892 72 0.05
893 161 0.11
894 2 0.00
895 8 0.01
896 777 0.53
897 158 0.11
898 4 0.00
899 1 0.00
900 9 0.01
901 1 0.00
903 3 0.00
904 253 0.17
905 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (889 bp):
GAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGACAGCAAATGCTAGGCTCGGGC
ATGTACTGGTGCCGCATTTTTCTTCTGCACCACGCGGACCATCGTCGGAGAACCTGACCGACGAC
ATTGGGGTTCCGACGATCGGGGAGACCACGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGT
ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAG
CATTTGAGATTTTACAGGTTTCTGCTTAGTAGCCATTAAAGTGTCTGAAATGGGACACTTTTTTC
AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCTTTCCGAAAAAATTTTTAAAAATCCG
AACCGTAAAAAGTTTCAAAAATTTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATAT
GAAGATGTTCCCAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGC
CGGCGTAGTGCCCGCCCGTCTGCCCCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTTC
CAATCTAAGATCGGACCAGACTGAGGGTTACGACAGCAGGACCGGCAGCACACAGAGGAGGACCC
GACCAATCCCCGGCTTGCACATCCCGCCCCTATGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTG
GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATA
Found at i:16199383 original size:26 final size:26
Alignment explanation
Indices: 16199347--16199399 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16199337 GTTGGCTTAG
16199347 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16199373 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16199399 G
1 G
16199400 ATCGAATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16199827 original size:26 final size:26
Alignment explanation
Indices: 16199791--16199842 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
16199781 GTTGGCGTAG
*
16199791 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
16199817 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
16199843 AATCATACCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:16201675 original size:651 final size:633
Alignment explanation
Indices: 16200393--16201676 Score: 1621
Period size: 651 Copynumber: 2.0 Consensus size: 633
16200383 AGAAATATGA
*
16200393 AGATGTACCTAAACCCAACTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCG
1 AGATGTACCTAAACCCAACTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * * * * *
16200458 GCGTAGTGCCCGCCCGCTCGTTCGCCTGCTCGTTTTGCCGGTTGGCTTAGGCATACGGAGTTCAT
66 GCGTAGTGCCCGCCAGCTCGTTCGCCTACTCATTTCGCCAGTTGGCTTAGGCATACGGAATTCAT
* * * * * **
16200523 TCCCAGTCTAAGATCGGACTGACTGAAGGTTGTGTCAATAGGATCGACAGCATGCAGAGGGGGAC
131 TCCCAGTCTAAGATCAGACTGACCGAAGGTTGCGACAACAGGATCGACAGCACACAGAGGGGGAC
*
16200588 CCGACCGATCCCCGGCTTACGCATCCTACCCCTCTGGCCGGCTGAGCACCCGCACGTTCGTTTCA
196 CCGACCGATCCCCGGCTTACGCATCCCACCCCTCTGGCCGGCTGAGCACCCGCACGTTCGTTTCA
* * * * * * *
16200653 TGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGTTTACGACAGCACATGCTGGGCTCGG
261 TAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGTTTACGACAGCACATGCTGGGCACGA
*
16200718 GCATGTGCTGGTGCCATATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTG
326 GCATGTGCTGGTGCCATAATTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTG
* *
16200783 ACTGGCGACATCGGGGTTTCGACGATCGGGGGGGCCAGGGGTGGTGTGCGCACATGATGTGCGAT
391 ACCGGCGACATCGGGGTTTCGACGATCGGGGGGGCCAGGGGTGGTGTGCGCACATGATGTGCAAT
* * * * *
16200848 GCGTGTTGGTACTTGGCCCTTATATTAGCCCCTATCCCTCATTAAACCTTGAGAACTCACACCCT
456 GCGTGCTGGCACTTGGCCCTTATATTAGCCCCTATCCCTCATGAAACCTTAAGAACTCACACCCC
*
16200913 CGTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGA
521 CGTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGAGA
* * * *
16200978 CACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTCGAGTTTTTAGC
586 CACTTTTTTCAAATGGTCACAAAATCTTATAAACTTCAAGTTTTTAGC
* * * * * *
16201026 AGATGTGCCTAAACCCACCTACCACCTTATTGATCTAGGGCTTGCGCATCCCGTCTCTCTGGCCG
1 AGATGTACCTAAACCCAACTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * *
16201091 GCGTAGTGCCCGTCCATC-CGTCTAC-CC-ACTCATTTCGTCAGTTGGCTTAGGCATATGGAATT
66 GCGTAGTGCCCG-CCAGCTCGT-T-CGCCTACTCATTTCGCCAGTTGGCTTAGGCATACGGAATT
* * * * * * *
16201153 CATTCCTAGTCTAATATTAGACTCGACCGAGGGTTGCGACAGCAGGATCGGCAGCACACGGAGGG
128 CATTCCCAGTCTAAGATCAGACT-GACCGAAGGTTGCGACAACAGGATCGACAGCACACAGAGGG
* * * * *
16201218 GGACCCGACTGATCCTCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCTGCACTCTCGT
192 GGACCCGACCGATCCCCGGCTTACGCATCCCACCCCTCTGGCCGGCTGAGCACCCGCA----CG-
*
16201283 TTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCTA-TCTAAGATTAGACCAGACCAAGTGTT
252 TTC----G-T---TT---CAT--AGAGTTCATTCCC-AGTCTAAGATCAGACCAGACCAAG-GTT
* * ** *
16201347 T-CGGCAGCACATGCTGGGCACGAGCATGTGCTGGTGCCGTAATTTTCTTCGTCGGGGCACCATG
302 TACGACAGCACATGCTGGGCACGAGCATGTGCTGGTGCCATAATTTTCTTCACCGGGGCACCATC
* ** *
16201411 GTCTGAGCATCGTCGGAGAACCTGACCGGCGGTATTGGGGTTTC-AGCGATCGGGGGGGCC-GGG
367 GTCGGAGCATCGTCGGAGAACCTGACCGGCGACATCGGGGTTTCGA-CGATCGGGGGGGCCAGGG
* *
16201474 G-GGTGTGCGCACATGATGTGCAATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCT
431 GTGGTGTGCGCACATGATGTGCAATGCGTGCTGGCACTTGGCCCTTATATTAG-CCCCTATCCCT
* * *
16201538 CATGCAACCTTAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
495 CATGAAACCTTAAGAACTCACACCCCCGTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGT
*
16201603 AGCCATTAAAGTGTCTGAAATGGAGACACTTTTTTCAAATGGTCACAAAATCTTATAAACTTCAA
560 AGCCATTAAAGTGTCTAAAATGGAGACACTTTTTTCAAATGGTCACAAAATCTTATAAACTTCAA
*
16201668 TTTTTTAGC
625 GTTTTTAGC
16201677 TGAATTTTTT
Statistics
Matches: 552, Mismatches: 73, Indels: 34
0.84 0.11 0.05
Matches are distributed among these distances:
633 120 0.22
634 89 0.16
635 1 0.00
638 2 0.00
639 3 0.01
643 1 0.00
644 1 0.00
647 2 0.00
650 49 0.09
651 142 0.26
652 137 0.25
653 5 0.01
ACGTcount: A:0.21, C:0.27, G:0.26, T:0.26
Consensus pattern (633 bp):
AGATGTACCTAAACCCAACTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
GCGTAGTGCCCGCCAGCTCGTTCGCCTACTCATTTCGCCAGTTGGCTTAGGCATACGGAATTCAT
TCCCAGTCTAAGATCAGACTGACCGAAGGTTGCGACAACAGGATCGACAGCACACAGAGGGGGAC
CCGACCGATCCCCGGCTTACGCATCCCACCCCTCTGGCCGGCTGAGCACCCGCACGTTCGTTTCA
TAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGTTTACGACAGCACATGCTGGGCACGA
GCATGTGCTGGTGCCATAATTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTG
ACCGGCGACATCGGGGTTTCGACGATCGGGGGGGCCAGGGGTGGTGTGCGCACATGATGTGCAAT
GCGTGCTGGCACTTGGCCCTTATATTAGCCCCTATCCCTCATGAAACCTTAAGAACTCACACCCC
CGTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGAGA
CACTTTTTTCAAATGGTCACAAAATCTTATAAACTTCAAGTTTTTAGC
Found at i:16203074 original size:26 final size:26
Alignment explanation
Indices: 16203035--16203090 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
16203025 TGGGTTGACT
16203035 TAAGCATACAGAGTTCATTCCCAGCC
1 TAAGCATACAGAGTTCATTCCCAGCC
** * *
16203061 TAAGCATATGGAGTTCATTCTCAGTC
1 TAAGCATACAGAGTTCATTCCCAGCC
16203087 TAAG
1 TAAG
16203091 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAGCC
Found at i:16203704 original size:26 final size:26
Alignment explanation
Indices: 16203667--16203719 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16203657 GTTGACCTAG
* *
16203667 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
16203693 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16203719 G
1 G
16203720 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16203751 original size:629 final size:629
Alignment explanation
Indices: 16202541--16203739 Score: 1713
Period size: 629 Copynumber: 1.9 Consensus size: 629
16202531 GAGTTTCTAG
* *
16202541 CTGAATTTTATTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCATGTTTGGGGCCAAAAC
1 CTGAATTTTATTGTGCATGCCAACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAAC
*
16202606 TCCTTTCAAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAA
66 TCCTTTCAAAAAAAGTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAA
* * *
16202671 AACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACGAGC
131 AACGAGTCATCTTGCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATCAATTTACAAGC
* *
16202736 CATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACTCACCAACCACCCTATCGA
196 CATAAAAATGGCATTGGAACACAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGA
* * * * *
16202801 TCTTCGGCTTGCGCATCCCATCTCGCTGGCCGACGTAGTGCCCGCCTGCCCGCCCGCTCATTTCG
261 TCATCGGCTTACGCATCCCATCTCGCAGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCATTTCA
* * **
16202866 TCGGTTGGCTTAGCCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCAAGGGTTGTGGC
326 TCGGTTGGCTTAGCCATATGGAGTTCATTCACAATCTAAGATCAGACCGGATCAAGGGTTACGGC
* * * * * *
16202931 AGTAGGATCGACAGTACGTAGAGGGGGACCCAACCGATCCCCGACTTACCCATCCCACACTTCTA
391 AGCAGGATCGACAGCACGCAAAGGGGGACCCAACCCATCCCCGACTTACCCATCCCACACCTCTA
* * * * *
16202996 GCCGACTGGGTGCCCGCACGCTTGTTTCTTGGGTTGACTTAAGCATACAGAGTTCATTCCCAGCC
456 GCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACCTAAGCATACAGAGTTCATTCCCAGCC
* * *
16203061 TAAGCATATGGAGTTCATTCTCAGTCTAAGATCGAACCGGACCGAGGGTTATGACAGCACATGCT
521 TAAGCATACGAAGTTCATTCTCAGTCTAAGATCGAACCAGACCGAGGGTTATGACAGCACATGCT
16203126 GGAATCGGGTATGTGTCAGTGCTGTATTTTTCCTCGTCAGGGCA
586 GGAATCGGGTATGTGTCAGTGCTGTATTTTTCCTCGTCAGGGCA
*
16203170 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAAC
1 CTGAATTTTATTGTGCATGCCAACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAAC
* * *
16203235 T-CTTTCTGAAAAAAGTTTAAAAAATCTTGAATCGTAAAAAGTTTCAAAAATCGTGAAAAATAGA
66 TCCTTTC-AAAAAAAGTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGA
* *
16203299 AAATGAGTCGTCTTGCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATCAATTTACAAG
130 AAACGAGTCATCTTGCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATCAATTTACAAG
** * *
16203364 CCATAAAAATGGCATTGGAATGCAGAAATATGAAGATGTGCCTAGACCCACCTACCACCCTATCG
195 CCATAAAAATGGCATTGGAACACAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCG
* * ** **
16203429 ATCAAT-GGCTTACGCATCCCGTCTCTCAGGCCGACGTAGTGCCCGCCCGCCCGCCTTCTTGTTT
260 ATC-ATCGGCTTACGCATCCCATCTCGCAGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCATTT
* * * *
16203493 CATTGGTTGGCTTAGGCATATGGAGTTCATTCATAATCTAAGATCAGACCGGA-CTGAGGGTTAC
324 CATCGGTTGGCTTAGCCATATGGAGTTCATTCACAATCTAAGATCAGACCGGATC-AAGGGTTAC
* * * * * * * ** *
16203557 GGTAGCAGGATTGGCAGCACGCAAAGGGGGACCCAGCCCATCCCCGGCTTGCTCATCCTGCCCCT
388 GGCAGCAGGATCGACAGCACGCAAAGGGGGACCCAACCCATCCCCGACTTACCCATCCCACACCT
* * * * * *
16203622 CTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACCTAGGCATACGGAGTTCTTTCCCA
453 CTAGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACCTAAGCATACAGAGTTCATTCCCA
* *
16203687 GTCTAAGCATACGAAGTTCATTC-CTAGTCTAAGATCGGACCAGACCGAGGGTT
518 GCCTAAGCATACGAAGTTCATTCTC-AGTCTAAGATCGAACCAGACCGAGGGTT
16203740 GCAGCAGCAC
Statistics
Matches: 497, Mismatches: 69, Indels: 8
0.87 0.12 0.01
Matches are distributed among these distances:
628 7 0.01
629 489 0.98
630 1 0.00
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.25
Consensus pattern (629 bp):
CTGAATTTTATTGTGCATGCCAACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAAC
TCCTTTCAAAAAAAGTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAA
AACGAGTCATCTTGCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATCAATTTACAAGC
CATAAAAATGGCATTGGAACACAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGA
TCATCGGCTTACGCATCCCATCTCGCAGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCATTTCA
TCGGTTGGCTTAGCCATATGGAGTTCATTCACAATCTAAGATCAGACCGGATCAAGGGTTACGGC
AGCAGGATCGACAGCACGCAAAGGGGGACCCAACCCATCCCCGACTTACCCATCCCACACCTCTA
GCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACCTAAGCATACAGAGTTCATTCCCAGCC
TAAGCATACGAAGTTCATTCTCAGTCTAAGATCGAACCAGACCGAGGGTTATGACAGCACATGCT
GGAATCGGGTATGTGTCAGTGCTGTATTTTTCCTCGTCAGGGCA
Found at i:16206975 original size:878 final size:872
Alignment explanation
Indices: 16203693--16207770 Score: 4946
Period size: 876 Copynumber: 4.6 Consensus size: 872
16203683 CCCAGTCTAA
* * * * *
16203693 GCATACGAAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCACATTCAGGG
1 GCATACGGAGTTCATTCCTAATCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
16203758 CTCGGCCATGTGCTGGTGCCGCATATTTCTT-ATCGGGGCA-C--CAT---AG--T---CGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGCCGGAGA
* *
16203811 ACCTGACTGGCGGCATTGGGG-TTCTGACGATCGGAGGGGCC-GGGGGGTGTGCACACATGATGT
131 ACCTGAC-CGCGGCATTGGGGTTTC-GACGATCGG-GGGGCCGGGGGGGTGTGCGCACATGATGT
* * *
16203874 ATGATGGGTGCCGGTACTTGGCCCTTATATTGG-ACCCTATCCCTCATCAAACCTCGAGAACTCA
193 ACGATGGGTGCTGGTACTT-GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
16203938 CACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCGATTAAAGTGTCTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
16204003 TGGGGACACTTTTTTCAAATGGTCGCAAAATCTTGTACACTTTGAGTTTTTATCTAAATTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
16204068 GTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAGAACTCCTTCCAAAAA
387 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
* * *
16204133 AGTTTAAAAAATCCCGAACCACAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCATCTT
452 AGTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTT
* * ** *
16204198 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGATTTTACTTGCCAAAAAAATGGCA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
16204263 TTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACACGGCTTGTG
582 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACATGGCTTGCG
* * * *
16204328 CATCCCGTCTCTCTGGCCGGCATAGTGCCCGCTCGCCCGCCCGCCTGCCCACTCATTTCGTCGGT
647 CATCCCGTCTCTCTAGCTGGCATAGT----GCTCGCCCGCCC-CC-GCCCGCTCATTTCATCGGT
* * *
16204393 TGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACGGGACTGAGGGTTGGGGTAGCAG
706 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCAG
* * * ** * **
16204458 GATTGGCAGCACGCAGAGGGGGACCTGGCCGATCCTTGGCTTGCGCATCCTGCCCCTCTGGCCTA
771 GATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
*
16204523 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
836 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
16204560 GCATACGAAGTTCATTCCCAGTCTAAGCATACGTAGTTCATTCCCATTGAAGATCGGACCAGACC
1 GCATACGGAG----TT--CA-T-T---C---C-TA----A-T--C--T-AAGATCGGACCAGACC
* * ** * *
16204625 GAGAGTTGCGGCAGCAGATGCTGGGCTCGAACATGTGCTGGTGCCACATTTTTCTTCATCGGGGC
41 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
* * * *
16204690 ACCATCACCGGAGCATCGCCGAAGAACCTAACCGACGGCATTGGGGGATTTCGGCGATC-GGGGG
106 ACCATCATCGGAGCATCGCCGGAGAACCTGACCG-CGGCATT-GGGG-TTTCGACGATCGGGGGG
* * **
16204754 CCGAGGGGGTGTGCGCACCTGATGT-CGAT-GGTGCT-GTAGTCGCGCCCTTATATTGGCCCCCT
168 CCGGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTA--CTTGCCCTTATATTGGCCCCCT
* * **
16204816 ATCCCTC-TCAAACCTCTGAG-ACTCACACCCGCTTGAAGAGCAAGTGAGATTTTACAGCGTTTG
231 ATCCCTCATCAAACCTC-GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG-GTTT-
* * *
16204879 GCTGCTAGTAGCCATTAAAGCTGTCTTGAAAT-GGGACACTGTTTTCAAAT-GTCACAAATTCTT
293 GCTGCCAGTAGCCATTAAAG-TGTC-TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* *
16204942 G-ACAACTTTCGAAGTTTTTTATGCTGAATTTTTTTGGTGCATGGCAA-AAAAATACAAGGATTG
356 GTAC-AC-TTCG-AG-TTTTTA-GCTGAATTTTTTT-GTGCATGCCAACAAAAATACAAGGA-TC
* * * * * * *
16205005 A-GTCTAGCAAGTATTGGGGCCAAAACTCCTTCGAGAAAATTTTAAAAAATCACAAACCACAAAA
414 ACGTCTACCAAGT-TTGGGGCCAAAACTCCTTCCAAAAAAGTTTAAAAAATCTCGAACCGCAAAA
*
16205069 AG-TTCAAAAATCGTGAAAAATAGAAAACG-GTCATCTTGCCCATGAAACCTCACTGTGAAGGCT
478 AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTG-CCATGAAACTTCAC-GTGAAGGCT
* * * * *
16205132 TAAGGGACCATTTTATCAATTTACAAGACAT-AAAATGGCATTGGCAAGCAAAAATATGAAGATG
541 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATG
* * *
16205196 TGCCTAAACCCCACCTACCTACTCTATCTGATCCATGGCTTGCGCATCCCGTCTCTCT-GGTCGG
606 TGCCTAAA-CCCACCTACC-ACCCTATC-GATACATGGCTTGCGCATCCCGTCTCTCTAGCT-GG
* * * * * *
16205260 CGTA--G-T-GCCCG--CCCGCTCGCTCGTTTCATCGGTTGGCTTAGGCGTATGGAGCTCATTCC
667 CATAGTGCTCGCCCGCCCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCC
** * * * * * *
16205319 CAGTCTAAGATCAGACCAAACTAAGGGTTGCGATAGCAGAATGGGCAGCACGTAGAGGGGGACCT
732 CAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCC
* * ** *
16205384 GACCGATCCGCGGCTTACGCATCCCGCCCCTCTGGCCAACTGAGCACCCGCACGCTCGTTTCGTG
797 GACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
16205449 GGTTGACTTAG
862 GGTTGACTTAG
* * * * *
16205460 GCATACGGAGTTCGTTCCCAATCTAAGATCGGACCAGACCAATGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCTAATCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * **
16205525 CTCGTGCATGTGGTGGTGCAGCATTTTTCTTCGTCGGGGCACTATCACCGGAGCATCATCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGCCGGAGA
* * * * *
16205590 ACATGACCGGCGGTATTGGGGTTTCGACGATCGGCGGAGCC-GGGGGTTGTGCGCACATGATGTG
131 ACCTGACC-GCGGCATTGGGGTTTCGACGATCGG-GGGGCCGGGGGGGTGTGCGCACATGATGTA
* *
16205654 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAGCCTTGAGAACTCAC
194 CGATGGGTGCTGGTACTT-GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
16205719 ACCTCCTCAAAGAGCATTTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
258 ACCCCCTTAAAGAGCA-TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
16205784 TGGGGACACATTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTATCTGAATTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
16205849 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCATTCCAAAAA
387 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
* * *
16205914 AGTTTAAAAAATCTCGAACCGTAAAAAGTTT-AAAAATCGTGAAAAATAGAAAATGAGTCGTCTT
452 AGTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTT
* * * * *
16205978 CCCATTAAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTAGAAACCATAAAAATGGCA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
16206043 TTGGCACACAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATACACGGCTTGCG
582 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACATGGCTTGCG
16206108 CATCCCGTCTCTCTAGCTGGCATAGTGCTCGCCCGACCACCCGCCCGCTCATTTCATCGGTTGGC
647 CATCCCGTCTCTCTAGCTGGCATAGTGCTCGCCCG-CC-CCCGCCCGCTCATTTCATCGGTTGGC
* * * *
16206173 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATC
710 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCAGGATC
* * * * *
16206238 CGTAGCACACAGAGGGGGACCCGACTGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGA
775 GGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* ** * *
16206303 ACGCTTGTACGCTCATTTCGTGGGTTGACTTAG
840 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * *
16206336 GCATATGGAGTTCATTCCTAATCTAAGATCGGATCAGACTGAGGGTTGCGGCAGCACATACTGGG
1 GCATACGGAGTTCATTCCTAATCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
16206401 CTCGGGCTTGTGCTGGTGCCGTATTTTTCTTTGTCGGGGCACCATCGTCGGAGCATCGTCGTAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGCCGGAGA
* * * *
16206466 ACTTGACTCGCGGTATTGGGGTTCCGACGATCGGGGAGGCCGGGGTGGGTGTACGCACATGATGT
131 ACCTGAC-CGCGGCATTGGGGTTTCGACGATCGGGG-GGCCGGGG-GGGTGTGCGCACATGATGT
* *
16206531 ACGATGGGTGCTGGTACTTGACCCCTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCA
193 ACGATGGGTGCTGGTACTTG-CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
16206596 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
16206661 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGCCGAATTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
16206726 GTGCATGCCAAAAAAAATACAAGGATCACGTCCACCAAGTTTGGGGCCAGAACTCCTTCCAAAAA
387 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
* * * * *
16206791 AGTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAATATCGTGAAAAATAGAGAATGAGTCATCTT
452 AGTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTT
*
16206856 GCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
16206921 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACATGGCTTGCG
582 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACATGGCTTGCG
* * * * * * * **
16206986 CATCCCATCTCTTTGGCCTGCGTATTGCCCGCCCGCCCGCCCGCCCGCCCGCTCATTTCATCAAT
647 CATCCCGTCTCTCTAG-CTG-GCATAG--TGCTCGCCCG-CC-CCCGCCCGCTCATTTCATCGGT
* * **
16207051 TGGCTTAGGTATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA-TCGAGGGTTGCGACAGCA
706 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTGCGGTAGCA
* * * * * *
16207115 -GATCCGTAACACACAGAGGGGGACCCGACCGATCCCCAGCTTGCACATCCCGCCCCTCTGGCCG
770 GGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
*
16207179 GCTGAGCGCCCGCCCGCTCGTTTCGTGGGTTGACTTAG
835 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * * *
16207217 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGACGGTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCTAATCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * **
16207282 TTCGGGCATGAGCTTGTGCCATATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCTGGAGC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT--------CAT--C-GGAGC
* ** * * * *
16207347 ATCACCGGAGAACCTGACCGACAACATTGGGTTTTCGGCGATCGGGGGGCCGGGGGGGTCTGTGC
120 ATCGCCGGAGAACCTGACCG-CGGCATTGGGGTTTCGACGATCGGGGGGCCGGGGGGGTGTGCGC
*
16207412 TCATGATGTACGATGGGTGCTGGTACTTGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
184 ACATGATGTACGATGGGTGCTGGTACTTGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
16207477 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
249 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
*
16207542 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTACGAGTTTTTAGCTGA
314 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
*
16207607 ATTTTTTTGTGCA-GCCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCG
379 ATTTTTTTGTGCATG-CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
* * *
16207671 TTCTGAAAAAATTTTAAAAAATCTCGAACC-AAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
443 TTC-CAAAAAAGTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
*
16207735 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
507 GAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTA
16207771 GGCATACGGA
Statistics
Matches: 2763, Mismatches: 332, Indels: 210
0.84 0.10 0.06
Matches are distributed among these distances:
867 10 0.00
868 32 0.01
869 9 0.00
870 45 0.02
871 132 0.05
872 49 0.02
873 18 0.01
874 32 0.01
875 139 0.05
876 371 0.13
877 234 0.08
878 268 0.10
879 3 0.00
880 5 0.00
881 187 0.07
882 89 0.03
885 1 0.00
886 1 0.00
887 1 0.00
888 1 0.00
889 289 0.10
890 58 0.02
891 12 0.00
892 103 0.04
893 10 0.00
894 2 0.00
896 4 0.00
899 2 0.00
900 170 0.06
901 3 0.00
902 4 0.00
903 60 0.02
904 53 0.02
905 57 0.02
906 31 0.01
907 11 0.00
908 15 0.01
909 112 0.04
910 101 0.04
911 8 0.00
912 31 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (872 bp):
GCATACGGAGTTCATTCCTAATCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGCCGGAGA
ACCTGACCGCGGCATTGGGGTTTCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTACG
ATGGGTGCTGGTACTTGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAGTT
TAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACATGGCTTGCGCATC
CCGTCTCTCTAGCTGGCATAGTGCTCGCCCGCCCCCGCCCGCTCATTTCATCGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCAGGATCGGCAGC
ACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:16207021 original size:4 final size:4
Alignment explanation
Indices: 16207012--16207037 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
16207002 CCTGCGTATT
16207012 GCCC GCCC GCCC GCCC GCCC GCCC GC
1 GCCC GCCC GCCC GCCC GCCC GCCC GC
16207038 TCATTTCATC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.00, C:0.73, G:0.27, T:0.00
Consensus pattern (4 bp):
GCCC
Found at i:16211505 original size:26 final size:26
Alignment explanation
Indices: 16211476--16211528 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16211466 GTTGACTTAG
16211476 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16211502 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16211528 G
1 G
16211529 GTCAGATCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16212140 original size:904 final size:899
Alignment explanation
Indices: 16207810--16214439 Score: 8302
Period size: 900 Copynumber: 7.4 Consensus size: 899
16207800 TCGGATTGGA
* * * * *
16207810 GGTAGCAGGATCGACAGCACATAGAGGGGGACCCGATCGATCCCCAGCTTACGCATACCGCCCTT
1 GGTAGCAGGATCGACAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCAT-CCGCCCCT
* * * * * ** * **
16207875 TTGGCCGACTGAGCGCCCGCACACTCGTTTCATCTGTTGACTTAGGCACACGGAGTTTGTTCCCA
65 CTGGCCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* * * * * **
16207940 GTCTAAGCATACGGAGTTCATTCCCATTCGAAGATCGGATCAGACTGAGGGTTGCGATAGCACAT
130 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACAT
*
16208005 GCTGGGCTCGGGCATGTGCTGCTGGTGCTGCATTTTTCTTC-GCCGGGGCACCA---TC----C-
195 GCTGGGCTCGGGCA--TG-TGCTGGTGCCGCATTTTTCTTCAG-CGGGGCACCATCGTCGGAGCA
* * * * * * * *
16208061 -C--CGAAGAACTTGACCGACGACATTGGGGTTTCGGCGATCGGTGGGGCTGGGGGGTTTGCGCA
256 TCGTCGGAGAACCTGACCGGCGGCATTGGGG-TTCCGCGAT-GGGGGGGCGGGGGGGTGTGCGCA
* ** *
16208123 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCGCCTATCCCTCATCAAAATTTG
319 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
*
16208188 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGT
384 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* * *
16208253 GTCTGAAATGGAGACACTTTTTTCAAATGGTCACAAAATCTTTTACACTTCGAGTTTTTAGCTGA
449 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGA
* **
16208318 ATTTTTTTGTGCAAGCCAAAAAAAATACAAGGATCACGTCTATTAAGTTTGGGGCCAAAACTCCT
514 ATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
* ** *
16208383 TCTGAAAAAATTTTAAAAAATCATGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
579 TCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
* *
16208448 AGTCGTCTTGCCTTGAAACTTCACGTGAAGGCTTAAGGCACCATTGTATGAATTTACAAGCCATA
644 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* * * *
16208513 AAAATGGCATTGGCATGCAAAAATATGAAGACGTGCCTAAACCCTCCTACCACCCTATCGATCCA
709 AAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * * *
16208578 CGGCTTGCTCATCTCGTCTCTCTGG-CCGACGTAGTGCCCACCCGCCCGTCCGCTCGCTCGTTTT
774 CGGCTTGCGCATCCCGTCTCTCTGGCCCG-CGTAGTGCCCGCCCGCCCG-CCCCCCGCTCGTTTC
* * *
16208642 GTCGGTTGGCTTAGGCATACGGACTTCATTCCCAGTCTAAGA-CTGAACCAGACTGAGGGTTGC
837 ATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACTGAGGGTTGC
* ** * *
16208705 GGTAGTAGGATCGACAGCATGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCAACCCCT
1 GGTAGCAGGATCGACAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCC-GCCCCT
* * * * * * * *
16208770 CTAGTCGGCTGAGCGCCAGGATGCTCATTTCGCGGGTTGAC-T-----TA--G-G--------CA
65 CTGGCCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* * *
16208818 ---T-A-C--A--GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGTGTTGCGGCAGCTCAT
130 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACAT
* * * * * * **
16208874 GCTGGGCTCCGGCATGTGCTGGTGCCACATTTCTCTTCACCGGGGCTCCATCATCGGAGCATCAC
195 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCAGCGGGGCACCATCGTCGGAGCATCGT
* * * *
16208939 CGGAGAACCTGACCGGTGGCATTAGGGTTCCGCGATTGGGGGGCCGGGGGGTGTGCGCACATGAT
260 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGCGATGGGGGGGCGGGGGGGTGTGCGCACATGAT
*
16209004 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA-CTTGAGAACT
325 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
16209068 CACAACCCCTTAAAGAGCA-TTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGA
390 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
16209132 AATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTT
455 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTT
* * ** *
16209197 TTGTCCATGACAAAAAAAATACAAGGATCACGTCTACCAAGTTTGATGCCAAAACTCCTTTCGAA
520 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * ** * *
16209262 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATTATGAAAAATGGAAAACGAGTCGT
585 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
16209327 CTTGCCATGAAACTTCACGTAAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
650 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*** * *
16209392 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCCATCGATCCATGGCTT
715 GCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
16209457 GCGCATCCTGTCTCTCTGG-CCGACGTAGTGTCCGCCAGCTCG---CCCACTCGTTTCATCGGTT
780 GCGCATCCCGTCTCTCTGGCCCG-CGTAGTGCCCGCCCGCCCGCCCCCCGCTCGTTTCATCGGTT
*
16209518 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCACACCAGA-TGGAGGGTTGC
844 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGC
* *
16209574 -G--GCA-G--C-AC-G----CAGAGGGGGACCC-GACAGATCCCCGGCTTGCGCATCTCACCCC
1 GGTAGCAGGATCGACAGCACACAGAGGGGGACCCGGTC-GATCCCCGGCTTGCGCATC-CGCCCC
* * *
16209626 TCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCT
64 TCTGGCCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
* * * *
16209691 TGTCTAAGCAAACGGAGTTCATTCCCAGTCCAAGATCGGACCGGACCGGGGGTTGCGGCAGCACA
129 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACA
* * * * * *
16209756 TACTAGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCG
194 TGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCAGCGGGGCACCATCGTCGGAGCATCG
* * * *
16209821 TCGGAGAACCCGATCGACGGCATTGGGGTTCTGGCGATCGGGGGGG-GGTCGGGGGTGTGCGCAC
259 TCGGAGAACCTGACCGGCGGCATTGGGGTTC-CGCGAT-GGGGGGGCGG--GGGGGTGTGCGCAC
* * *
16209885 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAAATTGGCTCCCTATCCCTCATCAAACCTTGA
320 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* * *
16209950 GAACTCACACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAATAGGCATTAAAGTG
385 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* * * * *
16210015 TTTGAAATGGAGACACTTTTTTCAAATAGTCACAAAATATTGTACACTTCGACTTTTTAACTGAA
450 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAA
* *
16210080 TTTTTTTGTGCACGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTT
515 TTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* *
16210145 CCGAAAAAATTTTAAAAAATCCTGAACCGCAAAACGTTTCAAAAA-CTATGAAAAATAGAAAACG
580 CCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATC-ATGAAAAATAGAAAACG
16210209 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
644 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
** *
16210274 AAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAA
709 AAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * *
16210339 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCTGTCCG---CCCGTTCGTTTCAT
774 CGGCTTGCGCATCCCGTCTCTCTGGCCCGCGTAGTGCCCGCCCGCCCGCCCCCCGCTCGTTTCAT
*
16210401 CGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGC
839 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGC
** * * * *
16210462 GGTAGCAGGATCGGTAGCACACAGAGGGGGGCCCGGTTGATCCTCGGCTTGCACATCCTGCCCCT
1 GGTAGCAGGATCGACAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCC-GCCCCT
* * * * *
16210527 CTGGCCGACTAAACGCCCGCACGCTTGTTTCGTTGGTTGACTTAGGCATACAGAGTTCATTCCCA
65 CTGGCCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* * *
16210592 GTCTAAGCATGCGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTAG-GGTAGCACA
130 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT-GCGGCAGCACA
* * **
16210656 TGCTGGGCTTGGGCAT-TAGCTGGTGCTGCATTTTTCTTC-GTATGGGCACCATCG-CTGGAGCA
194 TGCTGGGCTCGGGCATGT-GCTGGTGCCGCATTTTTCTTCAG-CGGGGCACCATCGTC-GGAGCA
* ** * * * * *
16210718 TCGTCGGAGAGCCTGACTAGCGGCATTGGGGTTCCGGCGATTAGGGAGGCTGGGGGGTTTCCGCA
256 TCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCC-GCGA-TGGGGGGGCGGGGGGGTGTGCGCA
* *
16210783 CATGATGTGCGATGGATGCTGGTACTTGGCTCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
319 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
* * * *
16210848 AGAACTCACACCCCTTTAAAGAGCATTTCAGATTTTACAGGTTTGCTACTAGTAGCCATTAAAGT
384 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* * * *
16210913 GTCTGAAATGGGGAAACTTTTTTCAAATGGTCACAAAATCTTGCACACTTTCGAGTTTTTAACTG
449 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TTCGACTTTTTAGCTG
*
16210978 AATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCC
513 AATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
16211043 TTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
578 TTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
* *
16211108 GAGTCATCTTGCCATGAAACTTCACGTGATGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
643 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
*
16211173 AAAAATGGCATTGGCATGTAGAAATATGAATATGTGCCTAAACCCACCTACCACCCTATCGATCC
708 AAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
*
16211238 ACGGCTTGCGCATCTCGTCTCTCTGGCCCGCGTAGTGCCCGCCCGCCCGCCCTCCCGCTCGTTTC
773 ACGGCTTGCGCATCCCGTCTCTCTGGCCCGCGTAGTGCCCGCCCGCCCGCCC-CCCGCTCGTTTC
* * * * *
16211303 ATTGGTTGGCTTAGGCAAATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGC
837 ATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGC
* * * *
16211366 AGTAGCAGGATCGACAGCACACAGAGGGGGACTCGGTCGATCCCCGGCTTACACATGCCGCCCCT
1 GGTAGCAGGATCGACAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCAT-CCGCCCCT
* * * *
16211431 CTGACCGGCTAAGGGCCCGCACGCTCGTTCCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA
65 CTGGCCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* * * * *
16211496 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGGTCAGATCAGATCGAGGGTTGCGGCAGCACAT
130 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACAT
* * * * * **
16211561 GCTGGGCTTGGGCATGTGCTGGAGCTGCATTTTTCTTCGGCAGTCCACCATCGTCGGAGCATCGT
195 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCAGCGGGGCACCATCGTCGGAGCATCGT
* *
16211626 CAGAGAACCTGACCGGCGGCATTGGGGTTCCAGCGATCGGGGGGGTCGGGGGGAGTGTGCACACA
260 CGGAGAACCTGACCGGCGGCATTGGGGTTCC-GCGAT-GGGGGGG-CGGGGGG-GTGTGCGCACA
*
16211691 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATGCCTCATCAAACCTCGAG
321 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* * *
16211756 AAGTCACACCCTCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
386 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * *
16211821 CTGAAATGGGGACACTTTTTTCAATTGGTCACAAAATCTTGTACACTTCGACTTTTTGGCTAAAT
451 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAAT
* * * * *
16211886 TTTATTGTGCATGCCAACAAAAATACAAGGATCACATCTACCATGTTTGGGGCCGAAACTCCCTT
516 TTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTT
* * * * * *
16211951 -TGAAAAAATTTTAAAAAATCACGAACCACAAAACGTTTCAAAAATCGTGAAAAATAAAAAACGA
580 CCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
* **
16212015 GTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGAAATAA
645 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* *
16212080 AAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCC-CTTACCACCCAATCGATCCAC
710 AAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * *
16212144 AGCTTGTGCATCCCGTCTTTCTGGCCCACGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTCAT
775 GGCTTGCGCATCCCGTCTCTCTGGCCCGCGTAGTGCCCGCCCGCCCGCCC-CCCGCTCGTTTCAT
* * * *
16212209 CGATTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTAGACCGGACTGAGGGTTGC
839 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGC
* * * *
16212270 GGCCAGCAGGATCGAC-GCACACGCAGAGGAGG-CCCGGACATGATCCCAGGCTT-CGCATCC-C
1 GG-TAGCAGGATCGACAGCACA--CAGAGGGGGACCCGGTC--GATCCCCGGCTTGCGCATCCGC
* * * * * * *
16212331 GCCTCTTAGCTGGCTGATGCCCGGTCCGCACGCTCGTTTCCATGGGTTGACCTAAGGCATACGGA
61 CCCTC-TGGCCGGCT-AAG--C-GCCCGCACGCTCGTTT-CGTGGGTTGA-CTTAGGCATACGGA
* * * *
16212396 GTTCATTTCCCCAGTCTAAGCCCATACGGAGTTCATTCCCAGTCCAGGATAGGACTGGACCGA-G
119 GTTCA-TT-CCCAGTCTAAG--CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGG
* * * * * *
16212460 GTTACGGGCAGCAGATGCCTGGGACTCGAG-ACTGTGCTGGCTGCCACATTTTTC-TCCGAAGGG
180 GTTGC-GGCAGCACATG-CTGGG-CTCGGGCA-TGTGCTGG-TGCCGCATTTTTCTTCAG-CGGG
* * *
16212523 GCACCCATCGTCGGAGCCATCATCGGAGAACCCTGACTGGGCGTCATT-GGGTTCCGACGATGGG
239 GCA-CCATCGTCGGAG-CATCGTCGGAGAA-CCTGAC-CGGCGGCATTGGGGTTCCG-CGATGGG
** *
16212587 GGGGCCGGCGGGTTTGTGGCGCACATGATTGTGGCGATGGGTGCT-GTACTTGGCCCTTATGTTG
299 GGGG-CGG-GGGGGTGT-GCGCACATGA-TGT-GCGATGGGTGCTGGTACTTGGCCCTTATATTG
16212651 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
359 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
16212716 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
424 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * * *
16212781 TTGTACACTTCGAGTTTTTAGTTGAATTATTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
489 TTGTACACTTCGACTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTC
* * * * *
16212846 TACCAAGTTTGGGACTAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCG-TAAAAGTTT
554 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTT
* *
16212910 CAAAAATCGTG-AAAATAGAAAACGAGTCGTCTTGCCATGAAAATTCACGTGAAGGCTTAAGGGA
619 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* * *
16212974 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGAAGAGATATGAAAATGTGCCTAA
684 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAA
* *
16213039 ACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCATCTCTCTGG-CCGACGTAGT----
749 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCCG-CGTAGTGCCC
* * * *
16213099 GCCCG--C-CCACCCACTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
813 GCCCGCCCGCCCCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * *
16213161 ATCAGACTAGACTGAGGATTGT
878 ATCAGACCAGACTGAGGGTTGC
** * ** * * *
16213183 GCCAACAGGATCGGTAGCACGCAGAGGGGGACCCGGCCGATCCTCGGCTTGCGCATCTCGCCCCT
1 GGTAGCAGGATCGACAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATC-CGCCCCT
* * * * *
16213248 CTGGCCGGTTGAGCGCCTGCACGCTCGTTTCGTCGGTTCACTTAGGCATACGGAGTTCATTCCCA
65 CTGGCCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* * *
16213313 GTCTAAGCATACGGAGTTCATTCCCAGTCAAAGATCGGACCGGACCGAGGGTTGCGGTAGTACAT
130 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACAT
* *
16213378 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-GCCGGGGCACCATCATCAGAGCATCG
195 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCAG-CGGGGCACCATCGTCGGAGCATCG
* * * *
16213442 -CAGGAGAACCTGATCGGTGGCATTGGGGTTCCGACGATCGGGGGGGCCGGTGGGGTGTGCACAC
259 TC-GGAGAACCTGACCGGCGGCATTGGGGTTCCG-CGAT-GGGGGGG-CGGGGGGGTGTGCGCAC
* * * * *
16213506 ATAATGTGTGATGGGTGCTGGTTCTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTTGA
320 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* *
16213571 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCTATTAAAGTG
385 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* *
16213636 TCTGAATTGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
450 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAA
* * *
16213701 -TTTTTTGGGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTT
515 TTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * * *
16213765 TCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTAAAAAATCGTGAAAAATAGAAAACGA
580 CCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
16213830 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
645 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * * * * * *
16213895 AAATGGCATTGGCATGCAAAAATATGAAGATGTGCGTAAACTCACTTACCACCATATCTATCCAC
710 AAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * *
16213960 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTGGAGCCCGTCCGCCCGCCCGCCTGCTCGTTTCAT
775 GGCTTGCGCATCCCGTCTCTCTGGCCCGCGTAGTGCCCGCCCGCCCGCCC-CCCGCTCGTTTCAT
* * * *
16214025 CGGTTGGCTTAGGCATACGAATTTCATTCCCAGTCTAAGATCGGACCGGA-TCGAGGGTTGC
839 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGC
* ** * * * **
16214086 GGTAGCAGGATCGGCAGCACGTAGAGGGGGACACGGTCGATCCTCAGCTTGCTTATCCCGCCCCT
1 GGTAGCAGGATCGACAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCAT-CCGCCCCT
* * * * *
16214151 CTGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTTATTGCCA
65 CTGGCCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* * *
16214216 GTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGTGGCAGCACAT
130 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACAT
* * * * *
16214281 GCTGGGCTTGCGCATGAGCTGGTGTCGCATTTTTCTTCAGCGGGGCACCATCGTCGGAGCATC-A
195 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCAGCGGGGCACCATCGTCGGAGCATCGT
* * * * * **
16214345 CAGAAGAACCTGACCGACGGCATTGAGGTTCCGATGATTGGGGGGTCAGGGCAGGTGTGCGCACA
260 C-GGAGAACCTGACCGGCGGCATTGGGGTTCCG-CGA-TGGGGGGGC-GGGGGGGTGTGCGCACA
* *
16214410 TGATGTGTGGTGGGTGCTGGTACTTGGCCC
321 TGATGTGCGATGGGTGCTGGTACTTGGCCC
16214440 GCATACGGAG
Statistics
Matches: 5001, Mismatches: 583, Indels: 294
0.85 0.10 0.05
Matches are distributed among these distances:
856 1 0.00
857 73 0.01
858 2 0.00
861 1 0.00
862 2 0.00
863 3 0.00
865 2 0.00
866 31 0.01
867 2 0.00
868 2 0.00
869 121 0.02
870 1 0.00
871 1 0.00
873 374 0.07
874 28 0.01
875 80 0.02
876 8 0.00
877 22 0.00
878 3 0.00
879 1 0.00
881 1 0.00
883 125 0.02
884 6 0.00
885 6 0.00
886 72 0.01
887 29 0.01
888 440 0.09
889 5 0.00
891 3 0.00
892 1 0.00
893 98 0.02
894 192 0.04
895 257 0.05
896 27 0.01
897 21 0.00
898 10 0.00
899 199 0.04
900 552 0.11
901 12 0.00
902 49 0.01
903 370 0.07
904 479 0.10
905 269 0.05
906 207 0.04
907 18 0.00
908 14 0.00
909 15 0.00
910 20 0.00
911 33 0.01
912 25 0.00
913 86 0.02
914 7 0.00
915 43 0.01
916 6 0.00
917 19 0.00
918 13 0.00
919 12 0.00
920 141 0.03
921 95 0.02
922 254 0.05
923 12 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (899 bp):
GGTAGCAGGATCGACAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCGCCCCTC
TGGCCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATG
CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCAGCGGGGCACCATCGTCGGAGCATCGTC
GGAGAACCTGACCGGCGGCATTGGGGTTCCGCGATGGGGGGGCGGGGGGGTGTGCGCACATGATG
TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTT
TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
CATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
CGCATCCCGTCTCTCTGGCCCGCGTAGTGCCCGCCCGCCCGCCCCCCGCTCGTTTCATCGGTTGG
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGC
Found at i:16214225 original size:26 final size:26
Alignment explanation
Indices: 16214196--16214248 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16214186 GTTGACTTAG
* * *
16214196 GCATACGGAGTTTATTGCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16214222 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16214248 G
1 G
16214249 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16214480 original size:26 final size:26
Alignment explanation
Indices: 16214440--16214492 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16214430 TACTTGGCCC
* *
16214440 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGATCATTCCCAGTCTAA
16214466 GCATACAGAGATCATTCCCAGTCTAA
1 GCATACAGAGATCATTCCCAGTCTAA
16214492 G
1 G
16214493 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGATCATTCCCAGTCTAA
Found at i:16215375 original size:26 final size:26
Alignment explanation
Indices: 16215345--16215397 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16215335 GTTGACTTAG
*
16215345 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGACTAA
16215371 GCATACGGAGTTCATTCCCAGACTAA
1 GCATACGGAGTTCATTCCCAGACTAA
16215397 G
1 G
16215398 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGACTAA
Found at i:16217145 original size:26 final size:26
Alignment explanation
Indices: 16217109--16217159 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16217099 GTTGACTTAG
*
16217109 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16217135 GCATATGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
16217160 CGATCAGATC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16218035 original size:26 final size:26
Alignment explanation
Indices: 16218006--16218058 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16217996 GTTGACTTAG
*
16218006 GCATACAGAGTTCATTCCCGGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
16218032 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16218058 G
1 G
16218059 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16218138 original size:897 final size:902
Alignment explanation
Indices: 16216178--16218166 Score: 2813
Period size: 897 Copynumber: 2.2 Consensus size: 902
16216168 TCCCCGAGAT
* *
16216178 GTACGCT-CGTTTCATGGGTTGACTTAGGCAAACGAAGTTCATTCCCAGTCTAAGCATACGGAGT
1 GTACGCTCCG-TTCGTGGGTTGACTTAGGCATACG-AGTTCATTCCCAGTCTAAGCATACGGAGT
* * *
16216242 TCATTCCTAGTCTAAGATCGGACTGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGT
64 TCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGT
* * * * *** * ** *
16216307 GCTGGTGTCACGTTTTTCTTCGTCGGGGCACAATTACCAGAGCATCACCGGAGAACCTGACTAGC
129 GCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACGAGC
* * * *
16216372 GGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGGTGTGCACAAATGATGTGCGATGGGTACT
194 GGCATTGGGGTTCCGACGATCGAGGGGGCCAGGGGGGTGTGCACAAATAATGTGCGATGAGTACG
* * * *
16216437 GGTTCTTGGTAGTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAA
259 GGTACTTGGTACTTATATTAGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCATTAAA
**
16216502 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAATGTGTCTGAAATGAGGACACTTT
324 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGAGGACACTTT
* ** *
16216567 TTTCAAATGGTCACTAAATCTTGTACACTTTTAGTTTTTAGCTGAATTTTCTGGGTATGCCAACA
389 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTCTGGGCATGCCAACA
* *
16216632 AAAAATACAAGGATCACGTCTACCAAATTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAGA
454 AAAAATACAAGGATCAAGTCTACCAAATTTGAGGCCAAAACTCCTTCCAAAAAAATTTTAAAAGA
* * *
16216697 TCCCTAACCAACAAAAGTTTCGAAAATCGTGAAAAATAGAAAATGGGTCATCTTGCCATGAAACT
519 TCCCTAACCAACAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACT
* * *
16216762 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGGATTGGCACTTAG
584 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACTCAA
* * * *
16216827 AAATATGAAGATGTGCCTAAACCTACCTACCACCCTATCGATCCACGGCTTACGCTTCCCGTCTC
649 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTACACATCCCGTCTC
16216892 TCTGGCCGACGTAGTGCCCGCCCGTGCGCCCGCTCGCTCGTTTCATCAGTTGGCTTAGGCATACG
714 TCTGGCCGACGTAGTGCCCGCCCGTGCG-CCGCTCGCTCGTTTCATCAGTTGGCTTAGGCATACG
* ***
16216957 GAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTACGGTAGCAGGATTGACAGCACACA
778 GAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTACAACAGCAGGATTGACAGCACACA
* * * * * *
16217022 GAGGGGGATCCGACCGATCCCCAGCTTGCGCATCCTGCCCCTCTGGTCGACTGAGCGCCC
843 GAGGGGGACCCGACCGATCACCAGCTTACGCATCCTACCCCTCTGGCCGACTGAGCACCC
* ** * *
16217082 GCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATATGGAGTT
1 GTACGCTCCGTTCGTGGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * **** *
16217147 CATTCCCAGTCTACGATCAGATCGGACCGAGGGTTACAACAGCACATGCTGGGGTCGGGCATGTG
65 CATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTG
* * *
16217212 TTGGTGCTGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGATCGA-C
130 CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGA-CGAGC
* * * * *
16217276 GTCATTGGGGTTCCGGCGATC-AGGGGGGCCAGGGGGGTGTGCGCACATAATGTGCGATGAGTGC
194 GGCATTGGGGTTCCGACGATCGA-GGGGGCCAGGGGGGTGTGCACAAATAATGTGCGATGAGTAC
* * *
16217340 GGGTACTTGG-CCTTATATTAGCCCCCTATCCCTCATCAAACCTCGAGTACTCACACCCCATTAA
258 GGGTACTTGGTACTTATATTAGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCATTAA
*
16217404 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGGGACACTT
323 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGAGGACACTT
* * *
16217469 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTGCATGCCAA
388 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTCTGGGCATGCCAA
* *
16217534 -AAAAAATACAAGGATCAAGTCTACCAAGTTTGAGGCCAAAACTCCTTCCCAAAAAATTTTAAAA
452 CAAAAAATACAAGGATCAAGTCTACCAAATTTGAGGCCAAAACTCCTTCCAAAAAAATTTTAAAA
* *
16217598 -AT-CCTGAACTGC-A-AAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTTCCATG
517 GATCCCT-AAC--CAACAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATG
16217659 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
579 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
*
16217724 -TGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCACATCC
644 CT-CAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTACACATCC
* * * *
16217788 CGTCTCTCTGGCCGGCGTAGTGCCC-CCCGTTCG-C-CT-GCTCGTTTCGTCGGTTGGCTTAGGC
708 CGTCTCTCTGGCCGACGTAGTGCCCGCCCGTGCGCCGCTCGCTCGTTTCATCAGTTGGCTTAGGC
** * * * *
16217849 ATACGGAGTTCATTCCCAGTCTAAGATTGGATCAAACTGAGGGTTGCAACAGCAGTATTGACAGC
773 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTACAACAGCAGGATTGACAGC
** * *
16217914 ACACAGAGGGGGACCCCG-TTGATCATCGGCTTACGCAT-CTCACCCCTCTGGCCGACTGAGCAC
838 ACACAGAGGGGGA-CCCGACCGATCACCAGCTTACGCATCCT-ACCCCTCTGGCCGACTGAGCAC
16217977 CC
901 CC
*
16217979 GTACGCTCCGTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCGGTCTAAGCATACGGAGTT
1 GTACGCTCCGTTCGTGGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * *
16218044 CATTCCCAGTCTAAGATCAGACCAGACCGAGGTTTGTGGCAGCACATGCTGGGCTCTGGCATGTG
65 CATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTG
*
16218109 CTGGTGCCGCATTTTCCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTG
130 CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTG
16218167 CCTGCTCGTT
Statistics
Matches: 955, Mismatches: 119, Indels: 29
0.87 0.11 0.03
Matches are distributed among these distances:
896 2 0.00
897 293 0.31
898 5 0.01
899 1 0.00
901 11 0.01
902 191 0.20
903 215 0.23
904 234 0.25
905 3 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (902 bp):
GTACGCTCCGTTCGTGGGTTGACTTAGGCATACGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
ATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGC
TGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACGAGCGG
CATTGGGGTTCCGACGATCGAGGGGGCCAGGGGGGTGTGCACAAATAATGTGCGATGAGTACGGG
TACTTGGTACTTATATTAGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCATTAAAGA
GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGAGGACACTTTTT
TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTCTGGGCATGCCAACAAA
AAATACAAGGATCAAGTCTACCAAATTTGAGGCCAAAACTCCTTCCAAAAAAATTTTAAAAGATC
CCTAACCAACAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTC
ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACTCAAAA
ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTACACATCCCGTCTCTC
TGGCCGACGTAGTGCCCGCCCGTGCGCCGCTCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAG
TTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTACAACAGCAGGATTGACAGCACACAGAG
GGGGACCCGACCGATCACCAGCTTACGCATCCTACCCCTCTGGCCGACTGAGCACCC
Found at i:16219351 original size:26 final size:26
Alignment explanation
Indices: 16219315--16219367 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16219305 GTTGACTTAG
* *
16219315 GCATACGGAGTTCATTTCGAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16219341 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16219367 G
1 G
16219368 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16221395 original size:26 final size:26
Alignment explanation
Indices: 16221366--16221418 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16221356 CCCGAGTTAG
*
16221366 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACAGAGTTCACTCCCAGTCTAA
*
16221392 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCACTCCCAGTCTAA
16221418 G
1 G
16221419 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCACTCCCAGTCTAA
Found at i:16222294 original size:26 final size:26
Alignment explanation
Indices: 16222258--16222308 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
16222248 GTTGACTTAG
* *
16222258 GCATATAGAGTTCACTCCCAGTCTAA
1 GCATACAGAGTTCACTCCCAATCTAA
*
16222284 GCATACAGAGTTCATTCCCAATCTA
1 GCATACAGAGTTCACTCCCAATCTA
16222309 TGATCGGACC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCACTCCCAATCTAA
Found at i:16223172 original size:26 final size:26
Alignment explanation
Indices: 16223142--16223194 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16223132 GTTGACTTAG
*
16223142 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16223168 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16223194 G
1 G
16223195 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16224055 original size:26 final size:26
Alignment explanation
Indices: 16224018--16224070 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16224008 GTTGACTTAG
*
16224018 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16224044 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16224070 G
1 G
16224071 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16224454 original size:887 final size:879
Alignment explanation
Indices: 16220731--16225280 Score: 4985
Period size: 876 Copynumber: 5.1 Consensus size: 879
16220721 NNNNNNNNNN
** * * *
16220731 ATCCCTCATCAAACCTTGAGAACTCACGCCCCCTTAAAAAGCATTTAAGATTTTACAGGTTTGCT
1 ATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
16220796 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTCGAAATGGTCACAAAATCTTGTAC
66 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC-AAATGGTCACAAAATCTTGTAC
* * * *
16220860 ACTTC-A-TTTTTGGCTGAATTTTTTTGTGCATGCCAACAAAAATACATGGATCACGTC-AACAA
130 ACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
** * * * ** *
16220922 TGTTCAGGGCCAAAAATGCTGTCC-AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAA
195 -GTTTGGGGCCAAAACTCCT-TCCAAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTTAAA
* * * *
16220986 AATCATGAAAAATAGAAAACGAGTCATCTTGCCACGAAACTTCACGTGAAGGCTTTAGGGACCAT
258 AATCGTGAAAAATA-AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
16221051 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCC
322 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCC
* * * * * * * *
16221116 ACCTACCACTCTATCGATCCACGACTTGCGCATCCTGCCCCTCTGGCCGACATATTGCCCG--C-
387 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG
* * * * *
16221178 CC-GCCAGCTCGTTTCGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAAACC
452 CCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-T
* * * * **
16221242 AG-ACTGAGTTTTTCGATAGCAGGATCAGCAGCATGCAGAGGGGGACCCAACCGATCCCCAGCTT
516 AGAACTGAG------GGTTGCAGGA-CAGCA-C--GCAGAGGGGGA-CCGATCGATCCCTGGCTT
* * * * *** *
16221306 GCGCATCCCGCCCCTCTGG-TCGACTGAGCGCCTGCACGCTCGTTTCATGGCCCGAGTTAGGCAT
570 ACGCATCCTGCCCCTCTGGCT-GGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCAT
* * * *
16221370 ACGGAGTTCACTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAG
634 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAG
* **
16221435 GGTTGCGGCTGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACC---G--AG
699 GGTTGCGGCAGCACATGCTGGGCTC-GGCATGTGCTGGTGCCGCATTTTTCTTTGCCGGGGCCAG
* ** * * * * * * *
16221495 -GAACTATCACCGAAGAACCTGAACGGCGACGTTGGGGTTCTGATGATCGGGGGGCCACTGGCGG
763 CGGAC-ATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG-C-C-GG-GG
*
16221559 GGTGTG--CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCT
823 GGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * * * * *
16221614 ATTCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTTAGATTTTACAAGTTTGTT
1 ATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* *
16221679 GCCAGTAGACATTAAAGTGAT-TGAAATGGGGACACTTTTTTCAAATAGTCACAAAATCTTGTAC
66 GCCAGTAGCCATTAAAGTG-TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * * *
16221743 ACTTTGCGTTTTTAGCTGAGTTTTTTTGTGCATGCC-ATAAAAATACAA-GATCACGTCTACC-A
130 ACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* * * *
16221805 GTTTTGGGG-CAAAACTCCTTCCAAAAAAAAATTAAAAAAATCCTGAACCGC-AAAAGTTTCAAA
195 G-TTTGGGGCCAAAACTCCTTCC-AAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTT-TAA
* *
16221868 AAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAATCTTCACGCGTGAAGGCTTAA-GGA
257 AAATCGTGAAAAATA-AAAACGAGTCGTCTTGCCATGAAA-CTTCA--CGTGAAGGCTTAAGGGA
* * * ** *
16221932 CCGTTGTATGAATTTACAAACGCA-ATAACATAGGCATTGGCACACAAAATATGATGAAGATGTG
318 CCATTGTATGAATTTACAAGC-CATA-AAAAT-GGCATTGGCACGTAGAA-AT-ATGAAGATGTG
* * * * *
16221996 CCTAAACCGC-CCATATCACCCTATCGATCCATGACTTGCGCATCCTGTCTCGCT-GCC-GCGTA
378 CCTAAACC-CACC-TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA
* *
16222058 GTG-CTGCCCGCCCGCCCAGCTCGTTTCGTCGGTTGGCTTAGGCAATACGGAGTTCATTCCC-GT
441 GTGCCCGCCCGCCTGCCC-GCTCGTTTCGTCGGTTGGCTTAGGC-ATACGGAGTTCATTCCCAGT
* *
16222121 CTAAGAATCAGATCAG-ACTGAGTGTTTCGGTAGAGGATCGGCAGCACGCAGAGGGGGACCCGA-
504 CTAAG-ATCAGAT-AGAACTGAG-GGTT--G--CAGGA----CAGCACGCAGAGGGGGA-CCGAT
* * * * * *
16222184 CTGATCCCCGGCTTACGCATCCCGCCCCTCTGGC-CGATAGAGCGCCTGCACGCTCGTTTCGTGG
557 C-GATCCCTGGCTTACGCATCCTGCCCCTCTGGCTGGCT-GAGCGCCCGCACGCTCGTTTCATGG
** * * * *
16222248 GTTGACTTAGGCATATAGAGTTCACTCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTATGAT
620 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * * * * *
16222313 CGGACCAGACCAAGGGTTACGACAGCACATGCTAGGCTCGGGCAAGTGCTGGTCCCGCACTTTTC
685 CGGACTAGACCGAGGGTTGCGGCAGCACATGCTGGGCTC-GGCATGTGCTGGTGCCGCATTTTTC
* * *
16222378 TTCGCTGGGG-CA-C---CA-C--C---G--CC-G---GACGGCATTGGGGTTCCGACAATCGGG
749 TTTGCCGGGGCCAGCGGACATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGG
* * * * *
16222426 GGGACCGGGGGGTGTGCATACATGATGTGTGACGAGTGCTGGTACTTGGCCCTTATATTGGCCTC
814 GGG-CCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
16222491 CT
878 CT
*
16222493 ATCCCTCATCAAACCTC-AGAAACTCACACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGC
1 ATCCCTCATCAAACCTCAAG-AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
16222557 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
65 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
*
16222622 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
130 ACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* * * ** * * * * *
16222687 ATTTGGGGCCAACACTCTTTCTGAAGAAATTTTAAAAAATCTTAAACCGCAAAAAGTTTCAAAAA
195 GTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTTAAAAA
* * *
16222752 TCGTGAAAAATAGAAAATGAGTGGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACTATTG
260 TCGTGAAAAATA-AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
16222817 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCAC
324 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCAC
** *
16222882 CTACCACTTTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAATGCTCCGCCTGC
389 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT-A-G-T--G-C--C
* * *
16222947 CTGCCTGCCTGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGA
446 C-GCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
** * * * * *
16223012 TCAGACCGGACTAAGGGTTGCAGCAGTAGGATCGGTAGCATGCAGAGGGGGACCCATCGATCCCC
510 TCAGATAGAACTGAGGGTT---GC---AGGA-C---AGCACGCAGAGGGGGACCGATCGATCCCT
** * *
16223077 GGCTTGTGCATCCCGCCGCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
565 GGCTTACGCATCCTGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
* * * *
16223142 GCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGAT
630 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGAC
* * * * * * *
16223207 CGAGGGTTACGGCAACACATGCTGGTCTCGGGCATGTGCTGCTGCTGCATTTTTCTTCGTCGGGG
695 CGAGGGTTGCGGCAGCACATGCTGGGCTC-GGCATGTGCTGGTGCCGCATTTTTCTTTGCCGGGG
* ** * *
16223272 -CA-C---CATCGTCGGAGAACCTGACCGACGACATTGGGGTTCC-AGCCTTAGGGGGGCTGGGG
759 CCAGCGGACATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGGCCGGGG
**
16223331 GGTGTTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGGCCC-TATATTGGCCCCCT
823 GGTG-TGCACACATGATGTGCGATGGGTGCTGGTACTT-GGCCCTTATATTGGCCCCCT
*
16223389 ATCCCTCAT-AAAGCCTCAAGAACTCACACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGC
1 ATCCCTCATCAAA-CCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * * *
16223453 TACCAGTAGCCA-TAACGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTAA
65 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * *
16223517 ACTTTGAGTTTTTAGCTCAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCGA
130 ACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
*
16223582 GTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAATCCCGAACCACAAAAAGTTTTAAAA
195 GTTTGGGGCCAAAACTCCTTCCAAAAAAATTTT-AAAAAATCCTGAACCACAAAAAGTTTTAAAA
*
16223647 ATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAACGCTTAAGGGACCATT
259 ATCGTGAAAAAT-AAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* *
16223712 GTATGAATTTACAAGCCATAAAAATGGCATTGGCAGGCAGAAATATGAAGATGTGCCTAAACCCA
323 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCA
*
16223777 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGC
388 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC
* * * *
16223842 CTGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGATTG
453 CTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATAG
16223907 AACTGAGGGTTGC-GG-CAGCACGCAGAGGGGGACTCGATCGATCCCTGGCTTACGCATCCTGCC
518 AACTGAGGGTTGCAGGACAGCACGCAGAGGGGGAC-CGATCGATCCCTGGCTTACGCATCCTGCC
* *
16223970 CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
582 CCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTC
* * *
16224035 CCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGTGGCAGCA
647 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGCAGCA
*
16224100 CATGCTGGGCTCAGGCATGTGCTGGTGCCGTATTTTTCTTTGCCGGGGCACCATCGCCGGAGCAT
712 CATGCTGGGCTC-GGCATGTGCTGGTGCCGCATTTTTCTTTGCCGGGG--CCA--G-CGGA-CAT
* *
16224165 CGTCGGAGAACCTGACCGACGGCAATGGGGTTCCGACGATCGGGGGGCCAGGGGGTGTGCACACA
770 CGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCACACA
* *
16224230 CGATGTGCGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCT
835 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
*
16224275 ATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTATACAGGTTTGCT
1 ATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * *
16224340 GCCAATAGCCATTAAAGTGTCTAAAATGGGGACACTTTTGTCAAATGGTCACAAAATCTTGTACA
66 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * * * *
16224405 CTTCAAATTTTTAGCTAAATTTTTTTTTGCAAGCCAACAAAAATACAAGGATCACGTCTATCAAG
131 CTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * * * *
16224470 TTCGGGGCCAAAAATCCTTGCAAAAAAATTTTGAAAAATCCTGAACCATAAAAAG--TT-----T
196 TTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTTAAAAAT
* *
16224528 --TGAAAAAT----CCTGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
261 CGTGAAAAATAAAAAC-GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* ** * * *
16224587 ATGAATTTACAGGCCATAAAAATGGCATTCACATGTAGAAATATGAATATGTGCGTAAACCCACC
325 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACC
* * * * * * * * *
16224652 TGCCACCCTATCGATCCATGGCTTGCACATCCTGCCTCTCTAGCTGGCATAGGGCCCGCCCGCCC
390 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG--C
* * * *
16224717 ATCTACCCACTCGTTTCGTC-GTTGGCTTAGGCATACGGTGTTCATTCCCAATCTAAGATCAGAT
453 --CTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAT
* * * * *
16224781 CAGATCGAGGATTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCTGATCGAT-CCTCAGAT
516 -AGAAC--TGA--G-GGTTGCA-G---GACAGCACGCAGAGGGGGACC-GATCGATCCCT-GGCT
* * *
16224845 TACTCATCCAT-CCTCTCTGGATGGCTGAG-GCCCGCACGCTC-TTGTCATGGGTTGACTTAGGC
569 TACGCATCC-TGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTT-TCATGGGTTGACTTAGGC
* ** *
16224907 ATTCAAAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGA-TCAGACC
632 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACT-AGACC
* * * * ** *
16224971 GATGCTTGCGACAGCACATGCTGGGCTCGGCCATGTGATGGTGCCGCATTTTTCTCCGCCAGGG-
696 GAGGGTTGCGGCAGCACATGCTGGGCTCGG-CATGTGCTGGTGCCGCATTTTTCTTTGCCGGGGC
* * * * * *
16225035 CA-C---CATCGTCGGAGAACCTGATCGGCAGCATTGGGTTTCCAATGATCGGGGGGGCC-GGGG
760 CAGCGGACATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGG
* * *
16225095 GTGTGCGCAGATGATGTGCGATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCT
824 GTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* *
16225151 ATCCCTCATCAAACCTCGAGAACTCACACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
1 ATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* **
16225216 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACATTTTTCAAATACTCACAAAATCTTGTACA
66 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
16225281 TTTCCATCAT
Statistics
Matches: 3171, Mismatches: 360, Indels: 279
0.83 0.09 0.07
Matches are distributed among these distances:
872 1 0.00
873 156 0.05
874 36 0.01
875 41 0.01
876 442 0.14
877 57 0.02
878 26 0.01
879 224 0.07
880 44 0.01
881 85 0.03
882 42 0.01
883 199 0.06
884 243 0.08
885 109 0.03
886 165 0.05
887 418 0.13
888 62 0.02
889 27 0.01
890 41 0.01
891 7 0.00
892 220 0.07
893 32 0.01
894 2 0.00
895 157 0.05
896 327 0.10
897 8 0.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (879 bp):
ATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
CTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
TTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTTAAAAAT
CGTGAAAAATAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
TGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCT
ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTG
CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATAGAAC
TGAGGGTTGCAGGACAGCACGCAGAGGGGGACCGATCGATCCCTGGCTTACGCATCCTGCCCCTC
TGGCTGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGCAGCACATG
CTGGGCTCGGCATGTGCTGGTGCCGCATTTTTCTTTGCCGGGGCCAGCGGACATCGTCGGAGAAC
CTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCACACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
Found at i:16226185 original size:26 final size:26
Alignment explanation
Indices: 16226149--16226199 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
16226139 GTTGACTTAG
16226149 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
16226175 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATTCCCAGTCTA
16226200 GGATTGAACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16227539 original size:717 final size:707
Alignment explanation
Indices: 16226175--16227652 Score: 2187
Period size: 717 Copynumber: 2.1 Consensus size: 707
16226165 CCCAGTCTAA
* * * *
16226175 GCATACGGAGTTCATTCCCAGTCTAGGATTGAACCGGACTGAGGGCTGCGGCAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATACTGGG
**
16226240 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCAGGGGCACCATTGCTGAAGAACCTAGCCGAC
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCAGGGGCACCATTGCTGAAGAACCTAGCCGAC
* *
16226305 GGCAATGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTTGTGCGCACATGATGTGCGATGGGTGC
131 GGCAATGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTTGTGCGCACAAGATGTACGATGGGTGC
*
16226370 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
196 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCACTTAA
*
16226435 AGAGCATTCGAGATTTTACTGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGCGGACAATT
261 AGAGCATTCGAGATTTTACTGGTTTGCTGCCAGTAGCCAGTAAAGTGTCTGAAATGCGGACAATT
16226500 TTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTATGCATGCCAACA
326 TTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTATGCATGCCAACA
16226565 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTAAAAAAT
391 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTAAAAAAT
* * * * *
16226630 CTCGAACCGTAAGAAGTTTCGAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTT
456 CTCGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCCTGCCATGAAACTT
* **
16226695 CACGTGAAGGCTTAAAGGATAATTGTATGAATTCACAAGCCATAAAAATGCTATTGGCACTCAAA
521 CACGTGAAGGCTTAAAGGACAATTGTATGAATTCACAAGCCATAAAAATGCTATTGGCAAGCAAA
*
16226760 AATATGAAGACGTGCCTAAACCCACCTACCACCCTATCGATACACGGCCTGCGCATCCCGTCTCT
586 AATATGAAGACGTGCCAAAACCCACCTACCACCCTATCGATACACGGCCTGCGCATCCCGTCTCT
* * *
16226825 CTGGC-CGGCATAGTGCTCGCCTGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAG
651 CTGGCAC-GCATAGTGCCCGCCCGCCCACCCGCCCACTCGTTTCGTCGGTTGGCTTAG
* * ** *
16226882 GCATACGGGGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATACTGGG
* *
16226947 TTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTC-GGGGCACCATCATTGGAGCATCGTCGGAG
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCG-CAGGGGCA-C--CATT---G---C-T-GAAG
* * * *
16227011 AACCT-GACCGGCGGCATTGGGGTTCCGATGATCGTGGGGGCC-GGGGGG-TGTGCGCACAAGAT
119 AACCTAG-CCGACGGCAATGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTTGTGCGCACAAGAT
16227073 GTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
183 GTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
16227138 CACACCCACTTAAAGAGCATTTGAGATTTTA-TAGGTTTGCTGCCGGTAGCTAGTAAAGTGTCTG
248 CACACCCACTTAAAGAGCATTCGAGATTTTACT-GGTTTGCTGCCAGTAGCCAGTAAAGTGTCTG
* * *
16227202 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGT
312 AAATGCGGACAATTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATT-T
* ** *
16227267 TTTGTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAGTCTTTCCGA
375 TTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGA
* * *
16227331 AAAAATTTTAAAAAATCTCGAACAGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCG
440 AAAAATTTTAAAAAATCTCGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCG
* * * *
16227396 TCCTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
505 TCCTGCCATGAAACTTCACGTGAAGGCTTAAAGGACAATTGTATGAATTCACAAGCCATAAAAAT
* * * * * *
16227461 GGTATTGGCAAGCACAAATATGAAGATGTGCCAAAACCCACCTACCCCCCTATCGATCCACGGCT
570 GCTATTGGCAAGCAAAAATATGAAGACGTGCCAAAACCCACCTACCACCCTATCGATACACGGCC
* * * * *
16227526 TGCGCATCCCGTCTCTCTTGCACGCGTAGTGCCCGCCCGCCTACCCGTCCGCTCGTTTCGTCGGT
635 TGCGCATCCCGTCTCTCTGGCACGCATAGTGCCCGCCCGCCCACCCGCCCACTCGTTTCGTCGGT
16227591 TGGCTTAG
700 TGGCTTAG
* *
16227599 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAACCGAGGGTTGTGGCAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAG
16227653 TAGGATCGGC
Statistics
Matches: 687, Mismatches: 67, Indels: 24
0.88 0.09 0.03
Matches are distributed among these distances:
707 92 0.13
708 2 0.00
710 4 0.01
713 1 0.00
715 1 0.00
716 191 0.28
717 342 0.50
718 54 0.08
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (707 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATACTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCAGGGGCACCATTGCTGAAGAACCTAGCCGAC
GGCAATGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTTGTGCGCACAAGATGTACGATGGGTGC
TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCACTTAA
AGAGCATTCGAGATTTTACTGGTTTGCTGCCAGTAGCCAGTAAAGTGTCTGAAATGCGGACAATT
TTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTATGCATGCCAACA
AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTAAAAAAT
CTCGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCCTGCCATGAAACTT
CACGTGAAGGCTTAAAGGACAATTGTATGAATTCACAAGCCATAAAAATGCTATTGGCAAGCAAA
AATATGAAGACGTGCCAAAACCCACCTACCACCCTATCGATACACGGCCTGCGCATCCCGTCTCT
CTGGCACGCATAGTGCCCGCCCGCCCACCCGCCCACTCGTTTCGTCGGTTGGCTTAG
Found at i:16228710 original size:26 final size:26
Alignment explanation
Indices: 16228680--16228730 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16228670 TGACTTAGGA
*
16228680 ATACAGCGTTCATTCCAAGTCTAAGC
1 ATACAGAGTTCATTCCAAGTCTAAGC
*
16228706 ATACAGAGTTCATTCCTAGTCTAAG
1 ATACAGAGTTCATTCCAAGTCTAAG
16228731 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCAAGTCTAAGC
Found at i:16229366 original size:903 final size:900
Alignment explanation
Indices: 16226882--16229465 Score: 3445
Period size: 920 Copynumber: 2.8 Consensus size: 900
16226872 GTTGGCTTAG
* * **
16226882 GCATACGGGGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
16226947 TTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCATTGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCGA-ATTTTTCTTCATCGGGGCACCATCATCGGAGCATCGCCGAAGA
* * *
16227012 ACCTGACCGGCGGCATTGGGGTTCCGATGATCGTGGGGGCC-GGGG-GGTGTGCGCACAAGATGT
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGAGGTGCGCGCACATGATGT
*
16227075 ACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
16227140 CACCCACTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCGGTAGCTAGTAAAGTGTCTGAAA
259 CACCCACTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
16227205 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTG-TTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTT
* **
16227269 TGTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-GTCTTTCCGAA
389 TGTGCATGACAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTT-CGAA
* *
16227332 AAAATTTTAAAAAATCTCGAACAGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGT
453 AAAATTTTAAAAAATCTCGAACCGCAAAAAGTTT-AAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
16227397 CCTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
16227462 GTATTGGCAAGCACAAATATGAAGATGTGCCAAAACCCACCTACCCCCCTATCGATCCACGGCTT
582 GCATTGGCATGCAAAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTT
* * ** * *
16227527 GCGCATCCCGTCTCTCTTGCACGCGTAGTGCCCGCCCGCCTACCCGTCCGCTCGTTTCGTCGGTT
647 GCGCATCCAGTCTCTCTGGC-CGCGTAGTG-CC-CCCGCCCGCCCGCCCGATCGTTTCGTCGGTT
* * ** *
16227592 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCGAACCGAGGGTTGTGGCAGTAG
709 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAAACCAAGGGTTGTGGCAACAA
* * * * *
16227656 GATCGGCAACACACAGAGGAGGACTCGATTGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGG
773 GATCGGCAACACACAGAGGAGGACTCGATCGATCCCCGGCATGCGCATCCCACCCCTCTGGCCGA
* *
16227721 CTGAGCACCCACACACTCATTTCAGGGGTTGACTTAGGCATACGGAGTTCATTCGCAGTCTAA
838 CTGAGCACCCACACACTCATTTCAGGGGTTGACTTAGGAATACAGAGTTCATTCGCAGTCTAA
* * *
16227784 GCATACGGAGTTCATTCCCAGTCGAAGATTAGACAGGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
16227849 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCAGGGCACCATCATCGGAGCATCGCCAGAGA
66 CTCGGGCATGTGCTGGTG-CGAATTTTTCTTCATCGGGGCACCATCATCGGAGCATCGCC---GA
* *
16227914 ACCTAACCGGCGACATTGAGGTACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGAGG
127 A--GAA----C--C--T---G-ACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGAGG
* * * *
16227979 T-CTGTGCACATGATATGCGATGGGTGCTGGTACTTGTCCCTTATATTGGCCCCCTATCCCTCTT
178 TGC-GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* * * * *
16228043 CAAACTTTGAGAACTCACACCCGCTTAAAGAGCATTTGAGGTTTTACAGGTTTGCTACCAGTAGC
242 CAAACCTCGAGAACTCACACCCACTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* * *
16228108 CATTAAAGTGTCTGAAATGGGGACACTTTTTTTAAATGGCCACAAAATCTTGTACACTTTGAGTT
307 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * *
16228173 TTTAGCTGAATT-TTTTTGTGCACGGCAACAAAAATACAAGGATCACGTCTACAAAGTTTGGGGC
372 TTTAGCTGAATTGTTTTTGTGCATGACAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * * * *
16228237 CAAAACTCCTTTCGAAAAAATTTTAAAAAATCACGAACCGTAAAATGTTTCAAAATTGTGAAAAA
437 CAAAACACCTTTCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTAAAAATCGTGAAAAA
* *
16228302 TAGAAAACGAGTCGTGTTGCCATGAAACTTCACGTGAAGGCTTATGGGACCATTGTATGAATTTA
502 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* * *
16228367 C-GGTCCAAAAAAATGGCATTGGCATGCAAAAATATTAAGATGTGCCAAAACCCACCTACCACCC
567 CAAG-CCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCAAAACCCACCTACCACCC
*
16228431 TATCGATCCACGACTTGCGCATCCCA-TCTCTCTGGCCGACGTAGTGCCCTCCTGCCCGCCCGCC
631 TATCGATCCACGGCTTGCGCAT-CCAGTCTCTCTGGCCG-CGTAGTGCCC-CC-GCCCGCCCGCC
* * *
16228495 CGATCGTTTCGTCAGTTGGCTTAGGCATAGGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTA
692 CGATCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCA
* * * * * * *
16228560 AGGGTTGTTGTAACAAGATCGGTAGCACGCAGAGGGGGACTCGGTCGATCCCCGGCATGCGCATC
757 AGGGTTGTGGCAACAAGATCGGCAACACACAGAGGAGGACTCGATCGATCCCCGGCATGCGCATC
* * * * * * *
16228625 CCACCCCTCTTGCCGACTGAGCGCCCGCACGC-CTGTTTCATGGGTTGACTTAGGAATACAGCGT
822 CCACCCCTCTGGCCGACTGAGCACCCACACACTC-ATTTCAGGGGTTGACTTAGGAATACAGAGT
16228689 TCATTC-CAAGTCTAA
886 TCATTCGC-AGTCTAA
* * * ** * *
16228704 GCATACAGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGAAAGCAGATCCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
16228769 CTCGGGCATGTGCTGGTGCTGAATTTTTCTTCATCGGGGCACCATCGTCGAAGCATCACCGAAGA
66 CTCGGGCATGTGCTGGTGC-GAATTTTTCTTCATCGGGGCACCATCATCGGAGCATCGCCGAAGA
16228834 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGAGGTGCGCGCACATGATGTG
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGAGGTGCGCGCACATGATGTG
* * *
16228899 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTACCCCTGATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
16228964 ACCC-CTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAATAGCGATTAAAGAGTCTGAAAT
260 ACCCACTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
16229028 GGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTCCCAGTTTTTAGCTG-ATTGTTTTT
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTT
* * * * * *
16229092 GTGCATTACAACAAAAAGACAGGGATCACGTCTGCCAAGTTTCGGGCCAAAACACCTTTCAAAAA
390 GTGCATGACAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTTCGAAAA
* * * *
16229157 AATTTTAAAAAATCTTGAACCCCAAAAAGTTTGAAAAATCATGAAAAATAAAAAACGAGTCGTCT
455 AATTTTAAAAAATCTCGAACCGCAAAAAGTTT-AAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
16229222 TGCCATGAAACTTCACGTGAAGGCTTAAGGGATCATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
16229287 ATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
584 ATTGGCATGCAAAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
16229352 GCATCCAGTCTCTCTGGCCGGCGCAGTG--CCCGCCCGGCCGCCCGGTTGTTTCGTCGGTTGGCT
649 GCATCCAGTCTCTCTGGCC-GCGTAGTGCCCCCGCCCGCCCGCCCGATCGTTTCGTCGGTTGGCT
* * * *
16229415 TAGGCATACGGAGTTCATTCCGAGTCTAAGATCAAACCAGACCGAGGGTTG
713 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCAAGGGTTG
16229466 CGACTGCACA
Statistics
Matches: 1465, Mismatches: 178, Indels: 81
0.85 0.10 0.05
Matches are distributed among these distances:
899 73 0.05
900 2 0.00
901 4 0.00
902 300 0.20
903 285 0.19
904 4 0.00
905 2 0.00
907 3 0.00
909 1 0.00
911 2 0.00
913 1 0.00
915 3 0.00
917 3 0.00
918 9 0.01
919 40 0.03
920 653 0.45
921 76 0.05
922 4 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (900 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCGAATTTTTCTTCATCGGGGCACCATCATCGGAGCATCGCCGAAGAA
CCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGAGGTGCGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCACTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTTG
TGCATGACAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTTCGAAAAA
ATTTTAAAAAATCTCGAACCGCAAAAAGTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGCAAAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCAGTCTCTCTGGCCGCGTAGTGCCCCCGCCCGCCCGCCCGATCGTTTCGTCGGTTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCAAGGGTTGTGGCAACAAGATCGGCA
ACACACAGAGGAGGACTCGATCGATCCCCGGCATGCGCATCCCACCCCTCTGGCCGACTGAGCAC
CCACACACTCATTTCAGGGGTTGACTTAGGAATACAGAGTTCATTCGCAGTCTAA
Found at i:16230094 original size:712 final size:714
Alignment explanation
Indices: 16228704--16230179 Score: 2131
Period size: 712 Copynumber: 2.1 Consensus size: 714
16228694 CCAAGTCTAA
* * * * *
16228704 GCATACAGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGAAAGCAGATCCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGAAAGCACATCCTGGG
* *
16228769 CTCGGGCATGTGCTGGTGCTGAATTTTTCTTCATCGGGGCACCATCGTCGAAGCATCACCGAAGA
66 CTCGGGCATGTGCTGGTGCCGAATTTTTCTTCATCGGGGCACCACCGTCGAAGCATCACCGAAGA
* *
16228834 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGAGGTGCGCGCACATGATGTG
131 ACCTGACCGGCAGCATTGAGGTTCCGACGATCGGGGGGCCGGGGGAGGTGCGCGCACATGATGTG
* * * *
16228899 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTACCCCTGATCAAACCTCGAGAACTCAC
196 CGATGGGCGCTGCTACTTGGCCCTTATATTGGCCCCCTACCCCTCATCAAACCTCGAGAACTCAC
** *
16228964 ACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAATAGCGATTAAAGAGTCTGAAATG
261 ACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAATAGCCATTAAAGAGTCTGAAATG
*
16229029 GGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTCCCAGTTTTTAGCTGATTGTTTTTGT
326 GGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTCCCAGTTTTTAGCTAATTGTTTTTGT
* * * *
16229094 GCATTACAACAAAAAGACAGGGATCACGTCTGCCAAGTTTCGGGCCAAAACACCTTTCAAAAAAA
391 GCATGACAACAAAAAGACAAGGATCACGTCTACCAAGTTTCGGGCCAAAACACCTTCCAAAAAAA
** * * *
16229159 TTTTAAAAAATCTTGAACCCCAAAAAGTTTGAAAAATCATGAAAAATAAAAAACGAGTCGTCTTG
456 TTTTAAAAAATCCCGAACCCCAAAAAGTATCAAAAATCATAAAAAATAAAAAACGAGTCGTCTTG
*
16229224 CCATGAAACTTCACGTGAAGGCTTAAGGGATCATTGTATGAATTTACAAGCCATAAAAATGGCAT
521 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
16229289 TGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
586 TGGCACGTAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACAGCTTGCGC
* * * * *
16229354 ATCCAGTCTCTCTGGCCGGCGCAGTGCCCGCCCGGCCGCCCGGTTGTTTCGTCGGTTGGCTTAG
651 ATCCAGTCTCTCTGGCCGACGCAGTGCCCGCCCGACCGCCCGCTCGTTTCGTCGGTTAGCTTAG
* ** *
16229418 GCATACGGAGTTCATTCCGAGTCTAAGATCAAACCAGACCGAGGGTTGCGACTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGAAAGCACATCCTGGG
* ** *
16229483 CTCGGGCATGTGCTGGTGCCGAATTTTTCTTC-GCTGGGGCACCACCGTC-AGAGCATCGTCGGA
66 CTCGGGCATGTGCTGGTGCCGAATTTTTCTTCATC-GGGGCACCACCGTCGA-AGCATCACCGAA
* * *
16229546 GAA-CTGACCGGCAGCATTGAGGTTCCGGCGATCGGGGGGGTC-GGGG-GGTGTGCGCACATGAT
129 GAACCTGACCGGCAGCATTGAGGTTCCGACGATC-GGGGGGCCGGGGGAGGTGCGCGCACATGAT
* *
16229608 GTGCGATGGGCGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGGGAACT
193 GTGCGATGGGCGCTGCTACTTGGCCCTTATATTGGCCCCCTACCCCTCATCAAACCTCGAGAACT
* * *
16229673 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAATGTGTCTG-
258 CACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAATAGCCATTAAAGAGTCTGA
* * * *
16229737 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTTCACTTCGAGTTTTTAGCTTAATT-TT
322 AATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTCCCAGTTTTTAGC-TAATTGTT
* * ** * *
16229801 TTTGTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTTTGGCCAAAACTCCTTCCGA
386 TTTGTGCATGACAACAAAAAGACAAGGATCACGTCTACCAAGTTTCGGGCCAAAACACCTTCCAA
** * ** *
16229865 AAAAATTTTAAAAAATCCCGAACTGCAAAAGGTATCAAAAATTGTAAAAAATAGAAAACGAGTCG
451 AAAAATTTTAAAAAATCCCGAACCCCAAAAAGTATCAAAAATCATAAAAAATAAAAAACGAGTCG
*
16229930 TCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGGACCATTGTATGAATTTACAGGCCATAAAAA
516 TCTTGCCATGAAACTTCACGTGAAGGCTT-AAGGGACCATTGTATGAATTTACAAGCCATAAAAA
16229995 TGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACAGC
580 TGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACAGC
* * * * ** *
16230060 TTGCGCATCCCGTCTCTTTGGCCGACGTAGTGCCCGCCCGACCGCTCGCTCGTTTTTTTGGTTAG
645 TTGCGCATCCAGTCTCTCTGGCCGACGCAGTGCCCGCCCGACCGCCCGCTCGTTTCGTCGGTTAG
16230125 CTTAG
710 CTTAG
* * * *
16230130 GCATATGGAGTTCATTCCCAGTATAAGATCATACCAGACCGAAGGTTGCG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCG
16230180 GCAGCAGGAT
Statistics
Matches: 677, Mismatches: 79, Indels: 14
0.88 0.10 0.02
Matches are distributed among these distances:
711 125 0.18
712 342 0.51
713 90 0.13
714 120 0.18
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (714 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGAAAGCACATCCTGGG
CTCGGGCATGTGCTGGTGCCGAATTTTTCTTCATCGGGGCACCACCGTCGAAGCATCACCGAAGA
ACCTGACCGGCAGCATTGAGGTTCCGACGATCGGGGGGCCGGGGGAGGTGCGCGCACATGATGTG
CGATGGGCGCTGCTACTTGGCCCTTATATTGGCCCCCTACCCCTCATCAAACCTCGAGAACTCAC
ACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAATAGCCATTAAAGAGTCTGAAATG
GGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTCCCAGTTTTTAGCTAATTGTTTTTGT
GCATGACAACAAAAAGACAAGGATCACGTCTACCAAGTTTCGGGCCAAAACACCTTCCAAAAAAA
TTTTAAAAAATCCCGAACCCCAAAAAGTATCAAAAATCATAAAAAATAAAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACGTAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACAGCTTGCGC
ATCCAGTCTCTCTGGCCGACGCAGTGCCCGCCCGACCGCCCGCTCGTTTCGTCGGTTAGCTTAG
Found at i:16232077 original size:870 final size:872
Alignment explanation
Indices: 16229407--16234721 Score: 6039
Period size: 859 Copynumber: 6.0 Consensus size: 872
16229397 TTGTTTCGTC
* * ** * * * *
16229407 GGTTGGCTTAGGCATACGGAGTTCATTCCGAGTCTAAGATCAAACCAGACCGAGGGTTGCGACT-
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTGCGGCTA
*
16229471 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGA-ATTTTTCTTCGCTGGGGCACCACCGTCAGA
66 GCACATGCTGGGCTCGGGCATGTGCTGGTGCC-ACATTTTTCTTCGCTGGGGCACCATCGTCAGA
* * * * *
16229535 GCATCGT-CGGAGAA-CTGACCGGCAGCATTGAGG-TTCCGGCGATCGGGGGGGTC-GGGGGGTG
130 GCATCGTCCGGAGAACCTGACCGACGGCATTG-GGTTTCCGACGATCTGGGGGGCCGGGGGGGTG
* *
16229596 TGCGCACATGATGTGCGATGGGCGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
194 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* *
16229661 ACCTCGGGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCAT
259 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* *
16229726 TAATGTGTCTG-AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTTCACTTCGAGTTTTT
324 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* **
16229790 AGCTTAATTTTTTTGTGCATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTTTGGCCAAAA
389 AGCTGAATTTTTTTGTGCATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * * * * * *
16229855 CTCCTTCCGAAAAAATTTTAAAAAATCCCGAACTGCAAAAGGTATCAAAAATTGTAAAAAATAGA
454 CTCCTTCCGAAAAAATTTTAAAAAAT-CTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGA
*
16229920 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGGACCATTGTATGAATTTACAG
518 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT-AAGGGACCATTGTATGAATTTACAA
* *
16229985 GCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATC
582 GCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * *
16230050 GATCCACAGCTTGCGCATCCCGTCTCTTTGGCCGACGTAGTGCCCGCCCGACCGCTCGCTCGTTT
647 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCG-TCGTTT
** * * * * * *
16230115 TTTTGGTTAGCTTAGGCATATGGAGTTCATTCCCAGTATAAGATCATACCAGACCGAAGGTTGCG
711 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-AGACCAGACCGAGGGTTGCG
* *
16230180 GCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACTCGATCCTCGGCTTGCTGTATCCCGCCCC
775 GCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-TCGATCCCCGGCTTGC-GCATCCCGCCCC
* * *
16230245 TCTGGCCGGCCGAGCGCCTGCACGTTCGTTTCATG
838 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATG
* *
16230280 GGTTGACTTAGGCATAATGGAGTTCATTCCTAGTCTAAGCGTACGAGTTCATTCCAATCTGAGAT
1 GGTTGACTTAGGCAT-ACGGAGTTCATTCCCAG--T---C-TA--AG---------ATC-G-GAT
* * * *
16230345 GGGGACAGACCAAGGGTTGCGGCAAGCATATGCTAGGGCTCGGGCATAAGTGCTGGTGCCACATT
46 -CGGACTG----AGGGTTGCGGCTAGCACATGCT-GGGCTCGGGCAT--GTGCTGGTGCCACATT
* * *
16230410 TTTCTTCGCTATGGGG-----TCGGCA-A-CATCGT-CGGTGAA-CTGATCGACGGCATTAAAGG
103 TTTCTTCGC--TGGGGCACCATCGTCAGAGCATCGTCCGGAGAACCTGACCGACGGCATT---GG
* * * *
16230466 GTTT-CGACGAT-TCGGGGGGGCTGGGGGGTGTGCGGACATGATGTGGCGATTGGGTGCTGGCAC
163 GTTTCCGACGATCT-GGGGGGCCGGGGGGGTGTGCGCACATGATGT-GCGA-TGGGTGCTGGTAC
* * * * *
16230529 TTGGCCCTTTTATTGACGCCCCTAT--CTTATCAAACCTCGAGAACCCACA-CCCTTTAAAGAGC
225 TTGGCCCTTATATTGGC-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* *
16230591 ATGTCGAGATTTTACAGGTTTGCTGCGCAGTAGCCATTAAAGCGTCTGAAATGGGGACACTTTTT
289 AT-TTGAGATTTTACAGGTTTGCTGC-CAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTT
** *
16230656 TTCAAAT-GTC-CAAAAATCTTACACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAAA
351 TTCAAATGGTCAC-AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AA
* * *
16230719 AAAAATACAAGGATCACGTCTACCAGGTTTAGGGCCAAAACTCCTT-TGAAAAAAATTTTAAAAA
414 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG-AAAAAATTTTAAAAA
* * * * * *
16230783 ATCTCAAAC-TACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGGGTCGTCTTGGCATTAAA
478 ATCTGAACCGT--AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
16230847 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAT
541 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAT
* * * * *
16230912 AGAAATATGAAGATGTGCCTAATCCCACCTACCACCCTATCGATCCATGGCTTGTGTATTCCGTC
606 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* *
16230977 TCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGTTCGTTTTGTTGGTTGGCTTAGGCATACGGA
671 TCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCG-TCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * * *
16231042 GTTCATTCCCAGTCTAAGATTGGACTAGACTGAGGGTGGCAGCAGCAGGATCGGCAGCACGCAGA
735 GTTCATTCCCAGTCTAAGA-TAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGA
* * * * *
16231107 AGGGGACCCGACCGATCCCTGGCTTGCACATCCCGCCCTTCTGGCCGGCTGAGCGCCCGCACGCT
799 GGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
16231172 CGTTTCATG
864 CGTTTCATG
*
16231181 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTG-GGGTTGCAGCTA
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTGCGGCTA
* * * *
16231245 -CACATGCTGGGCTCGGGCATGTCCTGGTGCCTCATTTTTCTTCGCGGGGGCACCATCGTCGGAG
66 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCTGGGGCACCATCGTCAGAG
* * *
16231309 CATC-TCCGGAGAACCTGACCAACGGCATTGGTTTTCTG-CGATCTGGGGGGCCGGGGGGGTGTG
131 CATCGTCCGGAGAACCTGACCGACGGCATTGGGTTTCCGACGATCTGGGGGGCCGGGGGGGTGTG
* * **
16231372 CTCACATGATGTGCGATGGGTGGTGGTACTTGGCCCTTATATTGGCCCGTTATCCCTCATCAAAC
196 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
16231437 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA-TTTACAGGTTTGCTGCCAGTAGCCATTA
261 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
16231501 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
326 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* *
16231566 CTGAATTTTTTTGTGCATGCCAACGAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAC
391 CTGAATTTTTTTGTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* * ** *
16231631 TCCTTCCAAAAAAATTTTCAAAAATCATGAACCGTAAAAAGTTTTGAAAATCGTCAAAAATAGAA
455 TCCTTCCGAAAAAATTTTAAAAAATC-TGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAA
* *
16231696 AACGAGTCGTCTGGCCATGAAACTTCACATGAAGG-TTAAGGGACCATTGTATGAATTTACAAGC
519 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* ** * *
16231760 CATAAAAATAGCATTGGCACGCAGAAATATGAAGATGTGCCCAAACCGACCTACCACCCTATCGA
584 CATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * * * *
16231825 TCCATGGCTTGCGCATTCCGTCTCTCTGGCCAACGTAGTGCCCGCCCGCCGGCCCGTTCATTTCA
649 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCG-TCGTTTCG
* * ** *
16231890 TCGGTTGGCTTAGGCATACGGAGTTCATTCTCAGTCTAAGATTGCACCAGATTGAGGGTTGCGAC
713 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAG-ACCAGACCGAGGGTTGCGGC
* * * * *
16231955 AGCAGGATCGACAGCACGCAGAGGGGCACCCAATCGATCTCTGGCTTGCGCATCCCGCCCCTCTG
777 AGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
* *
16232020 GCCGGCTGAGCGCCCGCACGCTCATTTCATA
842 GCCGGCTGAGCGCCCGCACGCTCGTTTCATG
* * * *
16232051 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCT-AAG
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG---ATCG-G---A-T--CGGACTGAGG
** * * * * ** * * ** ** ** * **
16232115 CATACGGAGTTCATTCCCA-GTCTAAGATCGGACCAAATCGAGGGCTGCGCTACA-CATGCTAGG
56 GTTGC-G-GCT-A-GCACATG-CTGGGCTCGG-GCATGT-GCTGG-TGC-C-ACATTTTTCTTCG
* * * *** * * * * *
16232178 CTCGGGCATGTCC-TGGTGCCGTATTTTTCTTCGCGGGGGCACC--ATCGTCAGAGCATCGCTGG
111 CTGGGGCA---CCATCGT-CAG-A-GCATCGTC-C-GGAGAACCTGACCGAC-G-GCAT---TGG
** * * * * *
16232240 AGAACCTGCCCGTGGCATTGGGTTTCCGGCGATCTAGGGGGTC-GAGGGGTGTGCTCACATGATC
163 -G----TTTCC---G-A------------CGATCTGGGGGGCCGGGGGGGTGTGCGCACATGATG
*
16232304 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCGCTATCCCTCATCAAACCTCGAGAACTC
207 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
16232368 ACACCCCTTTAAAGACCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
272 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
16232433 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTT
337 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * ***
16232498 TGTGCATGCCAACAAAAATAAAAGGATCACGTCTACCGAGTTTTTTGCCAAAACTCCTTCCGAAA
402 TGTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* *
16232563 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCCAAAATCGTAAAAAATAGAAAACGAGTCGTC
466 AAATTTTAAAAAATCT-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
16232628 TTGCCGTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
530 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*** * * *
16232693 CATTGGCATGCAGAAATATGAAGATGTGCAT-AACCCACCTACCACTCC-ATCGATCTACCGCTT
595 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCAC-CCTATCGATCCACGGCTT
* * * * * * *
16232756 ACGCATCCCGTCTCTCTGGCTGGCGTAGTGCCTGCACG---GTCAC-TCGTTTCGTCAGTTGGCT
659 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG-CCCGTCGTTTCGTCGGTTGGCT
* * * * * *
16232817 TAGGCATACTGAGTTCATTCCCAGTCTAAGATCAAACCAGATCGAGGGTTGCTGTAGCAGGATCT
723 TAGGCATACGGAGTTCATTCCCAGTCTAAGAT-AGACCAGACCGAGGGTTGCGGCAGCAGGATCG
* * * *
16232882 GCAGCATGCAGAGGGGGACCCGATCGATCCCCGACTTGTGCATCCTGCCCCTCTGGCCGGCTGAG
787 GCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
*
16232947 CGCCCGCACGCTCGTTTCGTG
852 CGCCCGCACGCTCGTTTCATG
* *
16232968 GGTTGAC-T-----TA--G-G--CA-TCCCAGTCTAAGATTGGA-CTGGATTGAGGGTTGCGGC-
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-GGACTGAGGGTTGCGGCT
* *
16233019 AGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCG-TCGGGGCACCATCGCCAG
65 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCT-GGGGCACCATCGTCAG
* * * * *
16233083 AGCATC-ACTGGAGAACCTAACCGACGGCAATGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTG
129 AGCATCGTCCGGAGAACCTGACCGACGGCATTGGGTTTCCGACGATCTGGGGGGCCGGGGGGGTG
* *
16233146 TGCGCACATGATTTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
194 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
*
16233211 ACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
259 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* * * * *
16233276 TAAAGTGTCT-AGATGGGGATACTTTTTTCAAATGGTCACAAAATATTGTGCACTTCTAGTTTTT
324 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
*
16233340 AGCTGAATTTTTTTGTGCATGCCAAAAAAAATGCAAGGATCACGTCTACCAAGTTTGGGGCCAAA
389 AGCTGAATTTTTTTGTGCATGCC-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* * * * * *
16233405 AATCCTTCTGAAAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAA
453 ACTCCTTCCGAAAAAATTTTAAAAAAT-CTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAG
* *
16233470 AAAACGAGTCGTCTTGCCATGAAACTTCACGAGAAGGCTTATGGGACCATTGTATGAATTTACAA
517 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* * *
16233535 GCCAT-AAAATGGCATTAGCACATAGATATATGAAGATGTGCCTAAACCCACCGACCACCCTATC
582 GCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * *
16233599 GATCTACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCTCGTTC
647 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCG-TCGTTT
* * * * * * * *
16233664 CATCGGTTGGGTTAGGCATACGGAGTTCATTCCCAGTATAAGATCAGATCGGATCGAGGGCTACG
711 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-AGACCAGACCGAGGGTTGCG
* * * * **
16233729 GCAGCAGGATTGGCAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTGTGCATCTTGCCCCTC
775 GCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTC
*
16233794 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
840 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCATG
* *
16233827 GGTTGAC-T-----TA--G-G--CA-TCCCAGTCTAAGATTGGA-CTGGATTGAGGGTTGCGGC-
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-GGACTGAGGGTTGCGGCT
* *
16233878 AGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCG-TCGGGGCACCATCGCCAG
65 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCT-GGGGCACCATCGTCAG
* * * * *
16233942 AGCATC-ACTGGAGAACCTAACCGACGGCAATGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTG
129 AGCATCGTCCGGAGAACCTGACCGACGGCATTGGGTTTCCGACGATCTGGGGGGCCGGGGGGGTG
* *
16234005 TGCGCACATGATTTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
194 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
*
16234070 ACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
259 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
*
16234135 TAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
324 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* *
16234200 AGCTGAATTGTTTTT-TGCATGCCAATAAGAATACAAGGATCACGTCGACCAAGTTTGGGGCCAA
389 AGCTGAATT-TTTTTGTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * *
16234264 GACTCCTTCCGAAAAAATTTAAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATA
452 AACTCCTTCCGAAAAAATTTTAAAAAATCT-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATA
* * *
16234329 GAAAATGGGCCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
516 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
16234394 AGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
581 AGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * ** * *
16234459 AGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGGCGTAGCACCCGCCCGTCTG--C-TCGTTT
646 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGTCGTTT
* * * *
16234521 CGTCGGTTGGCATAGGTATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCG
711 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-AGACCAGACCGAGGGTTGCG
* * ** * * * *
16234586 GCAGCAGGATCGGTAGCACACAGAGGGGGACCCGGCCGATCCCCAGCATGTGCATCCTGCCCCTC
775 GCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTC
* * **
16234651 TGGCCGGCTGAACGCCTGCACGCTCGTTTTGTG
840 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCATG
*
16234684 GGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAG
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
16234722 CATACGGACT
Statistics
Matches: 3824, Mismatches: 446, Indels: 348
0.83 0.10 0.08
Matches are distributed among these distances:
854 40 0.01
855 343 0.09
856 90 0.02
857 153 0.04
858 2 0.00
859 471 0.12
860 223 0.06
861 108 0.03
863 2 0.00
865 1 0.00
866 1 0.00
867 1 0.00
868 3 0.00
869 17 0.00
870 337 0.09
871 225 0.06
872 47 0.01
873 61 0.02
874 77 0.02
875 15 0.00
876 14 0.00
877 14 0.00
878 1 0.00
879 10 0.00
880 15 0.00
881 8 0.00
882 7 0.00
883 5 0.00
884 5 0.00
885 12 0.00
886 7 0.00
887 12 0.00
888 6 0.00
889 14 0.00
890 5 0.00
891 15 0.00
892 8 0.00
893 2 0.00
894 10 0.00
895 9 0.00
896 6 0.00
897 34 0.01
898 13 0.00
899 27 0.01
900 68 0.02
901 104 0.03
902 84 0.02
903 296 0.08
904 139 0.04
905 14 0.00
906 2 0.00
908 2 0.00
909 1 0.00
911 2 0.00
916 1 0.00
917 151 0.04
918 1 0.00
919 2 0.00
920 52 0.01
921 348 0.09
922 81 0.02
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (872 bp):
GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTGCGGCTA
GCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCTGGGGCACCATCGTCAGAG
CATCGTCCGGAGAACCTGACCGACGGCATTGGGTTTCCGACGATCTGGGGGGCCGGGGGGGTGTG
CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
CTGAATTTTTTTGTGCATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
CCTTCCGAAAAAATTTTAAAAAATCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
TAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
CACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGTCGTTTCGTCG
GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGACCAGACCGAGGGTTGCGGCAGCA
GGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
GCTGAGCGCCCGCACGCTCGTTTCATG
Found at i:16232092 original size:26 final size:26
Alignment explanation
Indices: 16232062--16232140 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
16232052 GTTGACTTAG
16232062 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16232088 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16232114 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16232140 G
1 G
16232141 ATCGGACCAA
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16232496 original size:921 final size:918
Alignment explanation
Indices: 16231192--16232982 Score: 2697
Period size: 921 Copynumber: 1.9 Consensus size: 918
16231182 GTTGACTTAG
* ** * *
16231192 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGGGGTTGCAGCTACACATGCTGGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACTGGGGCTGCAGCTACACATGCTAGGC
* *
16231257 TCGGGCATGTCCTGGTGCCTCATTTTTCTTCGCGGGGGCACCATCGTCGGAGCATCTCCGGAGAA
66 TCGGGCATGTCCTGGTGCCTCATTTTTCTTCGCGGGGGCACCATCGTCAGAGCATCGCCGGAGAA
* * * * *
16231322 CCTGACCAACGGCATTGGTTTTCTGCGATCTGGGGGGCCGGGGGGGTGTGCTCACATGATGTGCG
131 CCTGACCAACGGCATTGGTTTCCGGCGATCTAGGGGGCCGGAGGGGTGTGCTCACATGATCTGCG
* *
16231387 ATGGGTGGTGGTACTTGGCCCTTATATTGGCCCGTTATCCCTCATCAAACCTCGAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCGCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
16231452 CCCCTTAAAGAGCATTTGAGATTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
261 CCCCTTAAAGACCATTTAAGATTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
16231517 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
326 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * *
16231582 ATGCCAACGAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATT
391 ATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATT
* ** *
16231647 TTCAAAAATCAT-GAACCGTAAAAAGTTTTGAAAATCGTCAAAAATAGAAAACGAGTCGTCTGGC
456 TTAAAAAATC-TCGAACCGTAAAAAGTTTCCAAAATCGTAAAAAATAGAAAACGAGTCGTCTGGC
16231711 CATGAAACTTCACATGAAGG-TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAGCATT
520 CATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAGCATT
* ** *
16231775 GGCACGCAGAAATATGAAGATGTGCCCA-AACCGACCTACCAC-CCTATCGATCCATGGCTTGCG
585 GGCACGCAGAAATATGAAGATGTG--CATAACCCACCTACCACTCC-ATCGATCCACCGCTTACG
* * * *
16231838 CATTCCGTCTCTCTGGCCAACGTAGTGCCCGCCCGCCGGCCCGTTCATTTCATCGGTTGGCTTAG
647 CATCCCGTCTCTCTGGCCAACGTAGTGCCCGCACG--GGCAC--TCATTTCATCAGTTGGCTTAG
* *** *
16231903 GCATACGGAGTTCATTCTCAGTCTAAGATTGCACCAGATTGAGGGTTGC-GACAGCAGGATC-GA
708 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGATCGAGGGTTGCTG-CAGCAGGATCTG-
* * *
16231966 CAGCACGCAGAGGGGCACCCAATCGATCTCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
771 CAGCACGCAGAGGGGCACCCAATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
16232031 GCCCGCACGCTCATTTCATAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGG
836 GCCCGCACGCTCATTTCATAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGG
16232096 AGTTCATTCCCAGTCTAA
901 AGTTCATTCCCAGTCTAA
16232114 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAA-TCGAGGGCTGC-GCTACACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACT-G-GGGCTGCAGCTACACATGCTAG
*
16232177 GCTCGGGCATGTCCTGGTGCCGT-ATTTTTCTTCGCGGGGGCACCATCGTCAGAGCATCGCTGGA
64 GCTCGGGCATGTCCTGGTGCC-TCATTTTTCTTCGCGGGGGCACCATCGTCAGAGCATCGCCGGA
*** *
16232241 GAACCTG-CCCGTGGCATTGGGTTTCCGGCGATCTAGGGGGTC-GAGGGGTGTGCTCACATGATC
128 GAACCTGACCAACGGCATT-GGTTTCCGGCGATCTAGGGGGCCGGAGGGGTGTGCTCACATGATC
16232304 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCGCTATCCCTCATCAAACCTCGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCGCTATCCCTCATCAAACCTCGAGAACTC
*
16232368 ACACCCCTTTAAAGACCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
257 ACACCCCCTTAAAGACCATTTAAGA-TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
16232433 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTT
321 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *** *
16232498 TGTGCATGCCAACAAAAATAAAAGGATCACGTCTACCGAGTTTTTTGCCAAAACTCCTTCCGAAA
386 TGTGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
16232563 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCCAAAATCGTAAAAAATAGAAAACGAGTCGTC
451 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCCAAAATCGTAAAAAATAGAAAACGAGTCGTC
* * * *
16232628 TTGCCGTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
516 TGGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAG
* *
16232693 CATTGGCATGCAGAAATATGAAGATGTGCATAACCCACCTACCACTCCATCGATCTACCGCTTAC
581 CATTGGCACGCAGAAATATGAAGATGTGCATAACCCACCTACCACTCCATCGATCCACCGCTTAC
*** * * * *
16232758 GCATCCCGTCTCTCTGGCTGGCGTAGTGCCTGCACGGTCACTCGTTTCGTCAGTTGGCTTAGGCA
646 GCATCCCGTCTCTCTGGCCAACGTAGTGCCCGCACGGGCACTCATTTCATCAGTTGGCTTAGGCA
* *
16232823 TACTGAGTTCATTCCCAGTCTAAGATCAAACCAGATCGAGGGTTGCTGTAGCAGGATCTGCAGCA
711 TACGGAGTTCATTCCCAGTCTAAGATCAAACCAGATCGAGGGTTGCTGCAGCAGGATCTGCAGCA
* * * * *
16232888 TGCAGAGGGGGACCCGATCGATCCCCGACTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCG
776 CGCAGAGGGGCACCCAATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* * *
16232953 CACGCTCGTTTCGTGGGTTGACTTAGGCAT
841 CACGCTCATTTCATAGGTTGACTTAGGCAT
16232983 CCCAGTCTAA
Statistics
Matches: 784, Mismatches: 74, Indels: 27
0.89 0.08 0.03
Matches are distributed among these distances:
917 159 0.20
918 2 0.00
919 3 0.00
920 54 0.07
921 357 0.46
922 202 0.26
923 7 0.01
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (918 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACTGGGGCTGCAGCTACACATGCTAGGC
TCGGGCATGTCCTGGTGCCTCATTTTTCTTCGCGGGGGCACCATCGTCAGAGCATCGCCGGAGAA
CCTGACCAACGGCATTGGTTTCCGGCGATCTAGGGGGCCGGAGGGGTGTGCTCACATGATCTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCGCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGACCATTTAAGATTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATT
TTAAAAAATCTCGAACCGTAAAAAGTTTCCAAAATCGTAAAAAATAGAAAACGAGTCGTCTGGCC
ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAGCATTG
GCACGCAGAAATATGAAGATGTGCATAACCCACCTACCACTCCATCGATCCACCGCTTACGCATC
CCGTCTCTCTGGCCAACGTAGTGCCCGCACGGGCACTCATTTCATCAGTTGGCTTAGGCATACGG
AGTTCATTCCCAGTCTAAGATCAAACCAGATCGAGGGTTGCTGCAGCAGGATCTGCAGCACGCAG
AGGGGCACCCAATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
TCATTTCATAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCC
CAGTCTAA
Found at i:16234734 original size:26 final size:26
Alignment explanation
Indices: 16234695--16234747 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16234685 GTTGACTTAG
*
16234695 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGACTTCATTCCCAATCTAA
*
16234721 GCATACGGACTTCATTCCCAGTCTAA
1 GCATACGGACTTCATTCCCAATCTAA
16234747 G
1 G
16234748 ATTGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGGACTTCATTCCCAATCTAA
Found at i:16236001 original size:26 final size:26
Alignment explanation
Indices: 16235965--16236015 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
16235955 TGACTTAGGC
16235965 ATACGGAGTTTATTCCCAGTCTAAGG
1 ATACGGAGTTTATTCCCAGTCTAAGG
*
16235991 ATACGTAGTTTATTCCCAGTCTAAG
1 ATACGGAGTTTATTCCCAGTCTAAG
16236016 ATCAGACTAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (26 bp):
ATACGGAGTTTATTCCCAGTCTAAGG
Found at i:16236901 original size:26 final size:26
Alignment explanation
Indices: 16236865--16236917 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16236855 GTTGACTTAG
16236865 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
16236891 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16236917 G
1 G
16236918 ATTGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16237066 original size:902 final size:899
Alignment explanation
Indices: 16235216--16238622 Score: 4705
Period size: 896 Copynumber: 3.8 Consensus size: 899
16235206 GCACCATTGT
* * * * *
16235216 CGGAGAACCTGACCGACGACATTGGGGTTCCGATGATCGGGGGGCCGGGGGGGTGTGCACACTTG
1 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATG
**
16235281 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCAATCATCAAACCTCGAGAA
66 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
16235346 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
131 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * * * *
16235411 G-GATGGGGATACTTTTTTCAAATGGTCACAAAATATTGTGCACTTCTAGTTTTTAGCTGAATTT
196 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* *
16235475 TTTTGTGCATGCCAAAAAAAATGCAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCC-TTCT
261 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTC-
* * *
16235539 GAAAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAAAAAACGAGT
325 GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
* *
16235604 CGTCTTGCCATGAAACTTCACGAGAAGGCTTATGGGACCATTGTATGAATTTACAAGCCAT-AAA
390 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * *
16235668 ATGGCATTAGCACATAGATATATGAAGATGTGCCTAAACCCACCGACCACCCTATCGATCTACGG
455 ATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * *
16235733 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCTCGTTCCATCGGTTG
520 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGCGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTA
* * * * *
16235798 GGTTAGGCATACGGAGTTCATTCCCAGTATAAGATCAGACCGGATCGAGGGTTA-CGGCAGCAGG
585 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGG-TAGTGGCAGCAGG
*** * * * * *
16235862 ATTGGCAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTGTGCATCTTGCCCCTCTGGCCGGC
649 ATCAACAGCACGTAGAGGGGGACCCAGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGAC
* * * *
16235927 TGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAAGGA
714 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCA
* * * * *
16235992 TACGTAGTTTATTCCCAGTCTAAGATCAGACTAGACTGAGGGTTGCGGCAGCACATGCTGGGCTC
779 TACGGAGTTCATTCCTAGTCTAAGATCGGACTAGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
* * * * *
16236057 AGGCATGTGCTGGTGCCGTATTTTTCTTCGT-CGGGCCATCATCACCGGAGCATCAC
844 GGGCATGTGCTGGTGCCGTATTTTTCTTC-TCCGGGGCACCATCATCGGAGCATCGC
* *
16236113 CGGAGAACCTAATCGGCGGCATTGGGGTTCCGACGATCGGGGGGCC-GGGGGGTGTGCGCACATG
1 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATG
* *
16236177 ATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAA
66 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* *
16236242 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCACTAAAGTGTCT
131 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
*
16236307 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGT
196 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * * *** *
16236372 TTTTATGCATGCCAACAAAAATACAAGGATGACGTCCACCAAGTGTATTGCCAAAAATCCATT-G
261 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCG
*
16236436 AAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCAG-GAAAAATAGAAAATGAG
326 -AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC-GTGAAAAATAGAAAACGAG
*
16236500 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAA
389 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* *
16236565 AATGGCATTGGCACATAGAAATATGAAGATGTTCCTAAACCCACCTACCACCCTATCTATCCACG
454 AATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
*
16236630 GCTTGCGCATCCCGTCTCTCTGGCCGACGTAGCGACCGCCCGCCCGCCCGCCCGCTCGTTTCATC
519 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTA--G--CGCCCGCCCGCCCGCCCGCTCGTTTCATC
* * * * *
16236695 GGTTAGCTTAGACATACGGAGTTCATTCCCAGTCTAGGATTGGACTGGACCGAAGGTAGTGGCAG
580 GGTTAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTAGTGGCAG
* * * * *
16236760 CAGTAGCAACAGCACGTAGACGGGGACCCAACCGATCCCCAGCTTGCGCATCCTGCCCCTCTGGC
645 CAGGATCAACAGCACGTAGAGGGGGACCCAGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGC
16236825 CGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTA
710 CGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTA
* * *
16236890 AGCATACGGAGTTCATTCCTAGTCTAAGATTGGACTGGACCGAGGGTTGCGGCAGCACATGTTGG
775 AGCATACGGAGTTCATTCCTAGTCTAAGATCGGACTAGACCGAGGGTTGCGGCAGCACATGCTGG
* **
16236955 GCTCGGGCATGTGCTGGTGACACA-TTTTCTTCTCCGGGGCACCATCATCGGAGCATCGC
840 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCTCCGGGGCACCATCATCGGAGCATCGC
* * *
16237014 CAGAGAACCTGACCGGCGGCATTGGGGTTCCAACGATCGGGGGGGTCGGGGGGGTGTGCGCACAT
1 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACAT
** * * *
16237079 GACATGCGATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATTCGTCATCAAACCTCGAGA
65 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* *
16237144 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTT
130 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * *
16237209 TGAAATGGCGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGATTT
195 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * *
16237274 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTTCCAAATTTGGGG--AAAAACTCCTTC
260 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAA-TCCTTT
* * * * * *
16237337 CAAAAAAATTTTGAAAAATCTCGAACCGCAAAAAGTTTCAAAAGTCGTGAAAAATAGAAAATGAG
324 CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
* *
16237402 TCGTCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAA
389 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * ** * *
16237467 AATGGCATTGGCACGTAGATATATGAAGATGTGTTTAAACCCACCTACCACTCTATCAATCCACG
454 AATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * ** * * * * *
16237532 ACTTGCGCATCCCGTCTCCCTTGTCGGCGTA----ATGCACGCTCGCCCACTCGTTTCGTTGGTT
519 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGCGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTT
* * * * *
16237593 AGCTTAGGCATACAGAGTTCATTCCCATTCTAAGATCGAACCAGACCGAGGGTTGTGGCAGCAGG
584 AGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTAGTGGCAGCAGG
* * ** * *
16237658 ATCAACAGCACGCAGAGGGGGACCCAGCCGATCCCCGGCTTGCGTATCCCACCCCTCTCGCTGAC
649 ATCAACAGCACGTAGAGGGGGACCCAGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGAC
* * * *
16237723 TGAGCAGCCACACAAGCTCGTTTCGTGTGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAG
714 TGAGC-GCC-CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG
* * * * *
16237788 CATACAGAGTTCATTCCCT-GTGTAAGATCGGCCCAGACCGAGGGTTACGGCAGCACATGCTGGG
777 CATACGGAGTTCATT-CCTAGTCTAAGATCGGACTAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
16237852 CACGGGTA-GTGCTGGTGCCGTATTTTTCTTCGCCAGGGCACCATCGCAT--GAGCATAGC
841 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCTCCGGGGCACCAT--CATCGGAGCATCGC
* * *
16237910 CGGAGAACTTGACCGGCGGCATTGGGGTTACGACGATCGGGGGCACCGGGGGGGTGTGCGCACAT
1 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGG-GCCGGGGGGGTGTGCGCACAT
* *
16237975 GATGTGCGATGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGA
65 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
*
16238040 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTCCCAGTAGCCATTAAAGTGTC
130 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * * *
16238105 TGAAATGGGGACACTTTTTTCAAATGCTCACAAAACCTTGTACACTTGGAGTTTTTACCTGAATT
195 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * * *
16238170 TTTTTGTGCATGCCAACAAAAAGAAAAGCATCACGTCTACCAAGTTTGGGGTCAAAACTCCTTTC
260 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTC
* *
16238235 GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCCAAAATCGAGAAAAATAGAAAACGAGT
325 GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
*
16238300 CGTCTTGCCGA-GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAAA
390 CGTCTTGCC-ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
*
16238364 AATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
454 AATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
*
16238429 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCTGCCCGCCCGCTCGTTTCATC
519 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTA--G-C-GCCCGCCCGCCCGCCCGCTCGTTTCATC
* * * * * ** ** * ** *
16238494 GGTTGGCTTAGGGATACTGAGTTCATTCCCAATCTAAGATCAGATTGGACTAAGGGTTGCAGCAA
580 GGTTAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTAGTGGCAG
* * * * * *
16238559 CAGGATCGACAGCACGTCGAGGAGGACCC-GACCGATCCCTGGCTTGCACATCCCGCCCCTCTGG
645 CAGGATCAACAGCACGTAGAGGGGGACCCAG-CCGATCCCCGGCTTGCGCATCCTGCCCCTCTGG
16238623 TCAGCTAAGA
Statistics
Matches: 2204, Mismatches: 271, Indels: 62
0.87 0.11 0.02
Matches are distributed among these distances:
894 137 0.06
895 19 0.01
896 555 0.25
897 475 0.22
898 102 0.05
900 2 0.00
901 71 0.03
902 481 0.22
903 239 0.11
904 1 0.00
905 122 0.06
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATG
ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCG
AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
TGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
TTGCGCATCCCGTCTCTCTGGCCGGCGTAGCGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTAG
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTAGTGGCAGCAGGAT
CAACAGCACGTAGAGGGGGACCCAGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTG
AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATA
CGGAGTTCATTCCTAGTCTAAGATCGGACTAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGG
GCATGTGCTGGTGCCGTATTTTTCTTCTCCGGGGCACCATCATCGGAGCATCGC
Found at i:16238794 original size:26 final size:26
Alignment explanation
Indices: 16238764--16238816 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16238754 GTTGACTTAG
16238764 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16238790 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16238816 G
1 G
16238817 ATGGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16239539 original size:26 final size:26
Alignment explanation
Indices: 16239503--16239555 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16239493 ATTGGCTTAG
*
16239503 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16239529 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16239555 G
1 G
16239556 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16240179 original size:737 final size:735
Alignment explanation
Indices: 16238732--16240262 Score: 2408
Period size: 737 Copynumber: 2.1 Consensus size: 735
16238722 GCTAGCTGAG
* * * * * * *
16238732 CGCCCGCACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
1 CGCCCGCCCGCTCGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACA
* * *
16238797 GAGTTCATTCCCAGTCTAAGATGGGACCAGACCAACCGTTGCGACAGCACATGCTGGGCTTAGGC
66 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCAACCATTGCGACAGCACATGCTGGGCTGAGGC
* * * * * *
16238862 ATGTGCTGGTGCTGCATTTTTCTTTGCCGGGGCACCATCGCCGGAGCATAACCGGAGAACCTGAC
131 ATGTGCTAGTGCCGCATTTTTCTTTACCAGGGCACCATCACCGGAGCATAACCGAAGAACCTGAC
* *
16238927 CGACGGCATTGGGGTTCCGGCGATCGGGGGGTCAGGGGGTGTGCGCACATGATGTGCGATGGGTG
196 CGACGGCATTGGGGTTCCGACGATCGGGGGGTCAGGGGGTGTGCGCACATGATGTGCGATCGGTG
* *
16238992 CTGGTACTTGGCCCTTTTATTGGCCCCCTATCCCTCCTCAAACCTCGATAACTCACACCCCCTTA
261 CTGGTACTTGGCCCTTTTATTGGCCCCCTATCCCTCATCAAACCTCGACAACTCACACCCCCTTA
16239057 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAATGGGGACACA
326 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAATGGGGACACA
* *
16239122 TTTTTGAAATGGTCACAAAATCTTGTACACTATGAGTTTTTAGCTAAATTGTTTTGTGCATGCCA
391 TTTTTCAAATGGTCACAAAATCTTGTACACTATGAGTTTTTAGCTAAATTGTTTTGTGCATACCA
** *
16239187 ACAAAAATACAGGGGTCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTTAAA
456 ACAAAAATACACAGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTTAAA
* *
16239252 AATCCAGAACCGTAAAAAGTTTCCAAAATCATGAAAAATAGAAAACGAGTCGTCTCGCAATGAAA
521 AATCCAGAACCGTAAAAAGTTTCAAAAATCATAAAAAATAGAAAACGAGTCGTCTCGCAATGAAA
*
16239317 CTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
586 CTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATAAAAATGGCATTGGCACAC
* * * * *
16239382 AGAAATATGAAGATGTGCCTAAACCAACCTATCACCCTATCGATCCACGGCTTGCGCATCCTGTC
651 AGAAATATGAAGATGTGCCTAAACCAACCTACCACCATATCGATCCACGACTTACGCATCCCGTC
*
16239447 TCTCTAGCTGACGTAGTGATTGCC
716 TCTCTAGCTGACATA--GA--GCC
* *
16239471 CGCCCGTCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACA
1 CGCCCGCCCGCTCGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACA
* *
16239536 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGCATTGCGATAGCACATGCTGGGCTCGA-G
66 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCAACCATTGCGACAGCACATGCTGGGCT-GAGG
* *
16239600 CATGTGCTAGTGCCGCATTTTTCTTTACCAGGGCACCATCACCGGAGCATCACCGAAGAACTTGA
130 CATGTGCTAGTGCCGCATTTTTCTTTACCAGGGCACCATCACCGGAGCATAACCGAAGAACCTGA
* * *
16239665 CCGACGGCATTGGGGTTCCGACGATCGGGGGTTCGGGGGGTGTGCGCACATGATGTGCGGTCGGT
195 CCGACGGCATTGGGGTTCCGACGATCGGGGGGTCAGGGGGTGTGCGCACATGATGTGCGATCGGT
16239730 GCTGGTACTTGGCCCTTTTATTGGCCCCCTATCCCTCATC-AACCTCGACAACTCACACCCCCTT
260 GCTGGTACTTGGCCCTTTTATTGGCCCCCTATCCCTCATCAAACCTCGACAACTCACACCCCCTT
* *
16239794 AAAGAGCATTTGATATTTTACAGGTTTGCTG-CAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
325 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAATGGGGACAC
* * *
16239858 TTTTTTCAAATGGTCACAAAATCTTGTACACTGTGAGTTTTTAGCTGAATTGTTTTGTGCATACC
390 ATTTTTCAAATGGTCACAAAATCTTGTACACTATGAGTTTTTAGCTAAATTGTTTTGTGCATACC
* *
16239923 AACAAAAATACACAGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCG-AAAAATTTTTAA
455 AACAAAAATACACAGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTT-A
* * *
16239987 AAAATCTC-GAACCGTAAAAGGTTTCAAAAATCATAAAAAATAGAAAACGAGTCGTCTGGCCATG
519 AAAATC-CAGAACCGTAAAAAGTTTCAAAAATCATAAAAAATAGAAAACGAGTCGTCTCGCAATG
*
16240051 AAACTTCACGTGAAGG-TCTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
583 AAACTTCACGTGAAGGCT-TAAGGGACCATTCTATGAATTTACAAGCCATAAAAATGGCATTGGC
*
16240115 ACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACGACTTACGCATCC
647 ACACAGAAATATGAAGATGTGCCTAAACCAACCTACCACCATATCGATCCACGACTTACGCATCC
* *
16240180 CGTCTCTCTGGCTGGCATAGAGCC
712 CGTCTCTCTAGCTGACATAGAGCC
* * *
16240204 TGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAG
1 CGCCCGCCCGCTCGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
16240263 ATTGGACCGA
Statistics
Matches: 726, Mismatches: 62, Indels: 14
0.91 0.08 0.02
Matches are distributed among these distances:
733 57 0.08
735 2 0.00
736 11 0.02
737 332 0.46
738 54 0.07
739 269 0.37
740 1 0.00
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.26
Consensus pattern (735 bp):
CGCCCGCCCGCTCGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACA
GAGTTCATTCCCAGTCTAAGATCGGACCAGACCAACCATTGCGACAGCACATGCTGGGCTGAGGC
ATGTGCTAGTGCCGCATTTTTCTTTACCAGGGCACCATCACCGGAGCATAACCGAAGAACCTGAC
CGACGGCATTGGGGTTCCGACGATCGGGGGGTCAGGGGGTGTGCGCACATGATGTGCGATCGGTG
CTGGTACTTGGCCCTTTTATTGGCCCCCTATCCCTCATCAAACCTCGACAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAATGGGGACACA
TTTTTCAAATGGTCACAAAATCTTGTACACTATGAGTTTTTAGCTAAATTGTTTTGTGCATACCA
ACAAAAATACACAGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTTAAA
AATCCAGAACCGTAAAAAGTTTCAAAAATCATAAAAAATAGAAAACGAGTCGTCTCGCAATGAAA
CTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATAAAAATGGCATTGGCACAC
AGAAATATGAAGATGTGCCTAAACCAACCTACCACCATATCGATCCACGACTTACGCATCCCGTC
TCTCTAGCTGACATAGAGCC
Found at i:16241307 original size:26 final size:26
Alignment explanation
Indices: 16241271--16241321 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16241261 GTTGACTTAG
16241271 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
* *
16241297 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATTCCCAATCTA
16241322 TGATCGGACT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:16242851 original size:26 final size:26
Alignment explanation
Indices: 16242811--16242863 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16242801 GTTGGCTTAG
*
16242811 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
*
16242837 GCATACGGAGCTCATTCCTAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
16242863 G
1 G
16242864 ATCCGAATGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:16244858 original size:898 final size:895
Alignment explanation
Indices: 16242781--16244990 Score: 2972
Period size: 898 Copynumber: 2.5 Consensus size: 895
16242771 TGCCTGCTCG
* * *
16242781 CCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
1 CCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
*
16242846 GCTCA-TTCCTAGTCTAAGATCCGAATGGATCGAGGGTTACAGCAGCACATGCTGGGCTCGGGCA
66 GTTCATTTCC-AGTCTAAGAT-CGAATGGATCGAGGGTTACAGCAGCACATGCTGGGCTCGGGCA
* * *
16242910 TTTGCTGGTGCCGTATTTTTCTTCACCA-GGG-CA---C--CACCGTCGGAGAACCTGACCGACG
129 TGTGCTGGTGCCGTATTTTTCTTCA-CAGGGGCCATGTCGGCATCATCGGAGAACCTGACCGACG
* ** * *
16242968 GTATTGGGGTTCCGGTGATCGGGGGGGCCAGGGTGTGTGCGCACATGATGTACGATGGGTGCTGG
193 GCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGG
* *
16243033 TACTTGGCTCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
257 TACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCTCGAGAACTCACACCCCCTTAAAGA
* *
16243098 GCATTTGAGATTTTACAAGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
322 GCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGAACACTTTTT
* *
16243163 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAGTTTTTTTGTGCATGCCAACAA
387 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
* * * * *
16243228 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCTTTCGAAAAATTTTTAAAAAATCT
452 AAATACAAGGATCACATCT---AAGTTTGGGGCCAAAACCCTTCCAAAAAAATTTTAAAAAATCC
* *
16243293 CGAATCGCAAAAACTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTCGCCATGAAACTTCA
514 CAAATCGCAAAAACTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTCGCCATGAAACTTCA
* ** * *
16243358 CGTGAAGGCTTAAGGGACCATTGTATGTATTTACAGCCATAAAAAATGGCATTGGCAACGCATAA
579 CGTGAAGGCTTAAGGGACAATTGTATCAATTTACAGCCATAAAAAATGGCATTGGCAACACAGAA
* *
16243423 ATATGAAGATGTGCCTAAAACCCACCTACCATCCTATCGATCCACGGCTTGCGCATCCTATCTCT
644 ATATGAAGATGTGCCTAAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTATATCT
* * ** *
16243488 CTAGCCGGCGTAGTGCCTGCCCACCCCCCTGCTTGTTTCGTCGGTTGGCTTAGGCCTACGGAGTT
709 CTAGCCGGCGTAGTGCCCGCCCACCCCCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * *
16243553 CATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGTGGCAGTAAGGATCAGTAGGATCGATAGC
774 CATTCCCAGTCTAAGATCGAACCAGACCGAGGG-TGT----GTAACGATCAGTAGGATCGAAAGC
* ** * * * * * *
16243618 ACTTAAAGGGGGACCTGGCCGATCCCCGGCTTGCGCATCCCGCTCCTCTGGCTGGCTCAGCG
834 ACATAAAGGGGGACCCAGCCGATACCCGACCTGCGCATCCCGCCCCTCTGGCTGGCACAGCA
* ** * * *
16243680 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATGTGAAGTTCATTCCCAGTCTAAGCAGATGGA
1 CCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * * **
16243745 GTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTAGCAGCACATGCTGGGCTCGGGCAT
66 GTTCATTTCCAGTCTAAGATC-GAATGGATCGAGGGTTACAGCAGCACATGCTGGGCTCGGGCAT
* * * *
16243810 GTGCTGCG-GCCGCATTTTTCTTCGCCAGGGCACCATCGTCGGGGCATCACCGGAGAACCTGACC
130 GTGCTG-GTGCCGTATTTTTCTTC-ACAGGG-GCCAT-GTC--GGCATCATCGGAGAACCTGACC
* * *
16243874 GACGGCATTTGGGTT-CGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
189 GACGGCATTGGGGTTCCGACGA-TCGGGGGGCCGGGGGGTGTGCGCACATGATGTACGATGGGTG
16243938 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCTCGAGAACTCACACCCCCTTA
253 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCTCGAGAACTCACACCCCCTTA
* **
16244003 AAGAGCATTTGAGATTTTACAGGTTTGCTGGAAGTAGCCATTAAAGTGTCTGAAATGGGAACACT
318 AAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGAACACT
16244068 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
383 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * *
16244133 AAAAAAATACAAGGATCACATCT-AGTTTTGGGCCAAAATGCCTTCCAAAAAAATTTTAAAAAGT
448 AAAAAAATACAAGGATCACATCTAAGTTTGGGGCCAAAA-CCCTTCCAAAAAAATTTTAAAAAAT
* * *
16244197 CCCAAA-CTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGGCATGAAACT
512 CCCAAATC-GCAAAAACTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTCGCCATGAAACT
16244261 TCACGTGAAGGCTTAAGGGACAATTGTATCAATTTACAAGCCAT-AAAAATGGCATTGGC-ACAC
576 TCACGTGAAGGCTTAAGGGACAATTGTATCAATTTAC-AGCCATAAAAAATGGCATTGGCAACAC
* * * *
16244324 AGAAATATGAAGATGTGCCT-AAACCCACCTGCCACCCTATCGATCGATGGCTTGCGCATCCTGT
640 AGAAATATGAAGATGTGCCTAAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTAT
* * * *
16244388 ATCTCTGGCTGGTGTAGTGCCCGCCCGCCCGTCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCAT
705 ATCTCTAGCCGGCGTAGTGCCCGCCC-ACC--CC-CCCGCTCATTTCGTCGGTTGGCTTAGGCAT
* * *
16244453 ACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGA-GG-GT-T-ACGA-CAGTAGGATCGAA
766 ACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTGTGTAACGATCAGTAGGATCGAA
* * * * *
16244513 AGCACATAGAGGGGGACCCAGTCGATACCCGACCTGTGCATCCCGCCCCTTTGG-TCGGCAGAGC
831 AGCACATAAAGGGGGACCCAGCCGATACCCGACCTGCGCATCCCGCCCCTCTGGCT-GGCACAGC
16244577 A
895 A
* *
16244578 CCCACAGGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGA
1 CCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * * *
16244643 GTTCATTTCCAGTCAAAGATCGAATCGGATCGAGGGTTACGGTAGTACATGCTGGGCTCGGGCAT
66 GTTCATTTCCAGTCTAAGATCGAAT-GGATCGAGGGTTACAGCAGCACATGCTGGGCTCGGGCAT
* *
16244708 GTGCTGGTGCCGTATTTTTCTTCATCGGGGTGCCATTGTCAGAGCATCATCGGAGAACCTGATCG
130 GTGCTGGTGCCGTATTTTTCTTCA-CAGGG-GCCA-TGTC-G-GCATCATCGGAGAACCTGACCG
**
16244773 ACGGCATTGGGGTTCCGACGATCGGGGGGTTGGGGGGTGTGCGCACATGATGTACGATGGGTGCT
190 ACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTACGATGGGTGCT
* * *
16244838 AGTACTTGGCCCTTATATTGGCCCCCTATCCCTC-CTCAAACCTTGAGAACTCACACCCCTTTAA
255 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAC-CAAACCTCGAGAACTCACACCCCCTTAA
* *
16244902 AGAGCATTTGAGATTTTACAAGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAT-GGAGACATT
319 AGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGA-ACACT
16244966 TTTTTCAAATGGTCACAAAATCTTG
383 TTTTTCAAATGGTCACAAAATCTTG
16244991 CCATGAAACT
Statistics
Matches: 1149, Mismatches: 130, Indels: 65
0.85 0.10 0.05
Matches are distributed among these distances:
897 10 0.01
898 413 0.36
899 140 0.12
900 7 0.01
902 2 0.00
904 60 0.05
905 41 0.04
906 126 0.11
907 10 0.01
908 60 0.05
909 249 0.22
910 31 0.03
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (895 bp):
CCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
GTTCATTTCCAGTCTAAGATCGAATGGATCGAGGGTTACAGCAGCACATGCTGGGCTCGGGCATG
TGCTGGTGCCGTATTTTTCTTCACAGGGGCCATGTCGGCATCATCGGAGAACCTGACCGACGGCA
TTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACT
TGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
TTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGAACACTTTTTTCAA
ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAT
ACAAGGATCACATCTAAGTTTGGGGCCAAAACCCTTCCAAAAAAATTTTAAAAAATCCCAAATCG
CAAAAACTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTCGCCATGAAACTTCACGTGAAG
GCTTAAGGGACAATTGTATCAATTTACAGCCATAAAAAATGGCATTGGCAACACAGAAATATGAA
GATGTGCCTAAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTATATCTCTAGCCG
GCGTAGTGCCCGCCCACCCCCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
AGTCTAAGATCGAACCAGACCGAGGGTGTGTAACGATCAGTAGGATCGAAAGCACATAAAGGGGG
ACCCAGCCGATACCCGACCTGCGCATCCCGCCCCTCTGGCTGGCACAGCA
Found at i:16245613 original size:625 final size:624
Alignment explanation
Indices: 16244400--16245615 Score: 1668
Period size: 624 Copynumber: 1.9 Consensus size: 624
16244390 CTCTGGCTGG
* *
16244400 TGTAGTGCCCGCCCGCCCGTCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
1 TGTAGTGCCCGCCCGCCCGCCCACCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * * * * *
16244465 CCCAGTCTAAGATCGGATCGGACCGAGGGTTACGACAGTAGGATCGAAAGCACATAGAGGGGGAC
66 CCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCAAGATCGAAAGCACACAGAGGAGGAC
* ** * * * *
16244530 CCAGTCGATACCCGACCTGTGCATCCCGCCCCTTTGGTCGGCAGAGCACCCACAGGCTCGTTTCG
131 CCAGTCGATACCCGACATAAGCATCCCGCCCCTCTGGCCGGCAGAGCACCCACACGCTCATTTCG
*
16244595 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTTCCAGTCAAA
196 TGGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAAGCATACGGAGTTCATTTCCAGTCAAA
* * ** * * * **
16244660 GATCGAATCGGATCGAGGGTTACGGTAGTACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTT
261 GATAGAATCGGACCGAGGGTTACGACAGCACATGCTGGGCACAGGCATGTGCTGGTGCCACATTT
* * * * * *
16244725 TTCTTCATCGGGGTGCCATTGTCAGAGCATCATCGGAGAACCTGATCGACGGCATTGGGGTTCCG
326 TTCATCATC-GGGTGCCATAGCCAGAGCATCACCGGAGAACCTAACCGACGGCATTGGGGTTCCG
*** * * *
16244790 ACGATCGGGGGGTTGGGGGGTGTGCGCACATGATGTACGATGGGTGCTAGTACTTGGCCCTTATA
390 ACGATCGGGGGGCCAGGGCGTGTGCACAAATGATGTACGATGGGTGCTAGTACTTGGCCCTTATA
* * *
16244855 TTGGCCCCCTATCCCTCCTCAAACCTTGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTA
455 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
*
16244920 CAAGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGAGACATTTTTTTCAAATGGTCACAAA
520 CAAGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGAGACACTTTTTTCAAATGGTCACAAA
16244985 ATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
585 ATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* *
16245025 TGTAGTTCCCGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC-GAGTTCATT
1 TGTAGTGCCCGCCCGCCCGCCCACCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * ** * * * *
16245089 CCCAGTCTAAGATCAGACCTGACTGAGGGTTGTGGCAGCAAGATCGACAGCACGCAGAGTAGGA-
66 CCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCAAGATCGAAAGCACACAGAGGAGGAC
** * * * * *
16245153 CTGGATCGATCCCCGGCATAAGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTC
131 CCAG-TCGATACCCGACATAAGCATCCCGCCCCTCTGGCCGGCAGAGCACCCACACGCTCATTTC
* * *
16245218 GTGGGTTGACTTAGGCATACGAAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTTCTAGTCAA
195 GTGGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAAGCATACGGAGTTCATTTCCAGTCAA
* *
16245283 AGATAGAATCGGACCGAGGGTTGCGACAGCACATGCTGGGGACAGGCATGTGCTGGTGCCACATT
260 AGATAGAATCGGACCGAGGGTTACGACAGCACATGCTGGGCACAGGCATGTGCTGGTGCCACATT
* * * *
16245348 TTTCATCGTC-GGTGCAGCGTAGCCGGAGCATCGCCGGAGAACCTAACC-AGCGGCATTGGGGTT
325 TTTCATCATCGGGTGC--CATAGCCAGAGCATCACCGGAGAACCTAACCGA-CGGCATTGGGGTT
* * *
16245411 CC-AGCGATCGGGTGGGCCAGGGCTTGTGCACAAATGATGTGCGATGGGTGCTGGTACTTGGCCC
387 CCGA-CGATCGGG-GGGCCAGGGCGTGTGCACAAATGATGTACGATGGGTGCTAGTACTTGGCCC
16245475 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
450 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* * * *
16245540 TTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
515 TTTTACAAGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGAGACACTTTTTTCAAATGGTC
16245605 ACAAAATCTTG
580 ACAAAATCTTG
16245616 TACACTTTGA
Statistics
Matches: 511, Mismatches: 74, Indels: 12
0.86 0.12 0.02
Matches are distributed among these distances:
622 5 0.01
623 4 0.01
624 276 0.54
625 226 0.44
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.25
Consensus pattern (624 bp):
TGTAGTGCCCGCCCGCCCGCCCACCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
CCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCAAGATCGAAAGCACACAGAGGAGGAC
CCAGTCGATACCCGACATAAGCATCCCGCCCCTCTGGCCGGCAGAGCACCCACACGCTCATTTCG
TGGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAAGCATACGGAGTTCATTTCCAGTCAAA
GATAGAATCGGACCGAGGGTTACGACAGCACATGCTGGGCACAGGCATGTGCTGGTGCCACATTT
TTCATCATCGGGTGCCATAGCCAGAGCATCACCGGAGAACCTAACCGACGGCATTGGGGTTCCGA
CGATCGGGGGGCCAGGGCGTGTGCACAAATGATGTACGATGGGTGCTAGTACTTGGCCCTTATAT
TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
AAGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGAGACACTTTTTTCAAATGGTCACAAAA
TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
Found at i:16246942 original size:26 final size:26
Alignment explanation
Indices: 16246911--16246963 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16246901 GTTGACTTAG
*
16246911 GCATAC-GAAGTTCATTCCTAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
16246937 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16246963 G
1 G
16246964 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16247836 original size:26 final size:26
Alignment explanation
Indices: 16247806--16247858 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16247796 GTTGACTTAG
16247806 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
*
16247832 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
16247858 G
1 G
16247859 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:16248740 original size:26 final size:26
Alignment explanation
Indices: 16248710--16248760 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16248700 TTGACTTAGG
16248710 CATACAAAGTTCATTCCCAGTCTAAC
1 CATACAAAGTTCATTCCCAGTCTAAC
**
16248736 CATACGGAGTTCATTCCCAGTCTAA
1 CATACAAAGTTCATTCCCAGTCTAA
16248761 GATCGGATAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.29, G:0.12, T:0.27
Consensus pattern (26 bp):
CATACAAAGTTCATTCCCAGTCTAAC
Found at i:16249396 original size:150 final size:150
Alignment explanation
Indices: 16249125--16249426 Score: 595
Period size: 150 Copynumber: 2.0 Consensus size: 150
16249115 ATTTTTTTAT
16249125 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTCCAAAAGAA
1 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTCCAAAAGAA
*
16249190 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
66 TGTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
16249255 CCATGAAACTTCACGTGAAG
131 CCATGAAACTTCACGTGAAG
16249275 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTCCAAAAGAA
1 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTCCAAAAGAA
16249340 TGTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
66 TGTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
16249405 CCATGAAACTTCACGTGAAG
131 CCATGAAACTTCACGTGAAG
16249425 GC
1 GC
16249427 TTAAGGGACC
Statistics
Matches: 151, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
150 151 1.00
ACGTcount: A:0.42, C:0.22, G:0.16, T:0.21
Consensus pattern (150 bp):
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTCCAAAAGAA
TGTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAG
Found at i:16251100 original size:876 final size:873
Alignment explanation
Indices: 16249275--16253735 Score: 4883
Period size: 899 Copynumber: 5.0 Consensus size: 873
16249265 TCACGTGAAG
* * *
16249275 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTCCAAAAGAA
1 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CTTTCAAAAAAA
* *
16249340 TGTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
65 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
16249405 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCTT
130 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCTT
* ** * * *
16249470 TGGCATGTACAAATATGAATTTGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTGGTGC
195 TGGCATGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * *
16249535 ATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCACCCTCTCGCCCGCTCGTTTCATCGGTT
260 ATCCCGTCTCTCTGGCTGGCGTAGTGCCCACCCG-TC-CGC-C-CGCTCGCT-G-TTCATCGGTT
* * * * *
16249600 GGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATC-AGACCGGTCCGAGGGTTGCAGCAGCAG
319 GGCTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACAGGACCGAGGGTTGCAGCAGTAG
* * * * * * * **
16249664 GATCGGCAGCACATAGATGGGGACCCGATCGATCCCTGACTTTCGCGTCCCGCCTATCTACACGC
383 GATCGGCAGCACACAGAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCCACC--CCT-CTGGC
* * * * ** * * * ** *
16249729 TCGTTCCGTAG-G-TTGACTTAGGCATACGTAGTTCATTCCCAGTC-TAAGCATATAGAGTTAAT
445 -CG-GCTG-AGCGCCTG-C--ACGC-T-CGT--TTCATGGCCTGACTTAGGCATACGGAGTTCAT
* * * *
16249791 TCCCTGTC-AATGATCAGACTAGACCGAGGGTTGCGGTAGCACATGCTCGGCTCGGGCATGTGCT
500 TCCCAGTCTAA-GATCAGACCAGACCGAGGGTTGCGGTAGCACATTCTGGGCTCGGGCATGTGCT
** ** * * * * *
16249855 GGT-CCACATTTTTCTTCACTAGGGAACCATCG-TCGGAGCATCACCGGAGAACCTGACCGACGA
564 GGTGCCGTATTTTTCTTCACCGGGGCACCATCGCT-GGAGCATCATCGGAGAACCTGACTGGCGG
* * ** *
16249918 CATTGGGGTTCCGACGATCGGAGGGGTCGGGGAGAGGTGTGCGAACATGATGTGATATAGGTGCT
628 CATT-GGGTTCCGACGATCGGAGGGGT-AGGG-G-GGTGTGCGCACATGATGTGCGATGGGTGCT
* * *
16249983 GGTACTTGGCCCTTATATTCGCCCGCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
689 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCACACCCCCTTAAA
16250048 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
754 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* *
16250113 TTTCAAATGGTCACAAAATCTTGTAAACTTCGAGTTTTTAGCTGAATTGTTTTGT
819 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
** * * ** *
16250168 GCACACCAACAGAAATACAAGGATCACGTCTAACAAGTTTGGGGTGAAAACTCTTTTCGAAAAAA
1 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC-TTTCAAAAAAA
* * *
16250233 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATAATGAAAAATAGAAAACGAGTCGTCTTG
65 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
16250298 CCATGAAACTTCACGTGAAGGCTTAAGGGATCATTGTATGAATTTACAAGCCATAAAAGTGGCTT
130 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCTT
* *
16250363 TGGCATGCAAAAATATGAAGATGTGCCTAAACCCATCTACCACCCTATCGATCCACGGCTTGCGC
195 TGGCATGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *
16250428 ATCCCGTCTCTCTGGCTGGCGTAGTGCCCACCCGTCTGCCCGCTCGCTCGTGTCGTCGGTTGGCT
260 ATCCCGTCTCTCTGGCTGGCGTAGTGCCCACCCGTCCGCCCGCTCGCT-GT-TCATCGGTTGGCT
* * *
16250493 TAAGCATACGGAGTTGATTCCCTGTCTAAGATCGAATAGGACCGAGGGTTGCAGCAGTAGGATCG
323 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACAGGACCGAGGGTTGCAGCAGTAGGATCG
*
16250558 GCAGCACACAGAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCCACCCCTCTGGCCGGATGAG
388 GCAGCACACAGAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAG
* ** *
16250623 CGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGGCTAAGATCAGA
453 CGCCTGCACGCTCGTTTCATGGCCTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * * *
16250688 CCGGACCGAGGGATGCGGCAGCACATTCTAGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCG
518 CCAGACCGAGGGTTGCGGTAGCACATTCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCA
** * * * * *
16250753 TTGGGGCACCATCGCTGAAGCATCGTCGGAGAACCTGACAGGCGGCATTGGCATTCC-AGCGATA
583 CCGGGGCACCATCGCTGGAGCATCATCGGAGAACCTGACTGGCGGCATTGG-GTTCCGA-CGATC
* * * * *
16250817 GG-GGGGTTGGGGGGAGTGCGCACATGATGTGCGATGGGTGCCGGTACTTGGCCCTTTTATTTGC
646 GGAGGGGTAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* *
16250881 CCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTCAAAGAGCATTTGAGATTTTACAGGT
711 CCCCTATCCCTCATCAAACCTCCAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* * *
16250946 TTGCTGCCAATAGCCGTTAAAGTGTCTGAAATGAGGG-CACTTTTTTCAATTGGTCACAAAATCT
776 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG-GGGACACTTTTTTCAAATGGTCACAAAATCT
* *
16251010 TGTACACGTCGAGTTTTTAGCTGGATTTTTTTGT
840 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
** * * * ** ** *
16251044 GCACACCAACAGAAATACAAGGATCAGGTCTAACAAGTTTCAGGTGAAAACTCTTTTCGAAAAAA
1 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC-TTTCAAAAAAA
*
16251109 TTTAAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
65 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * * *
16251174 CCATTAAACATCACGTGAAGGCTTAAGGGATCATTGTATGAATTTACAAGCCATAAAAGTGGCTT
130 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCTT
* *
16251239 TGGCACGTAGAAATATGAAGATGTGCCT--A---A---ACCA--C---C--T--A-------C-C
195 TGGCATGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * *
16251279 A--CCGTCTCTCTGGCCGACGTAGTG----CCCGCCCGCCCGTTC-AT-TTCATCGGTTGGCTTA
260 ATCCCGTCTCTCTGGCTGGCGTAGTGCCCACCCGTCCGCCCGCTCGCTGTTCATCGGTTGGCTTA
* * * * * * ** * * *
16251336 GGCATACGTAGTTCATTCCTAGTCTATGATC-AGACTGTACCGAGGGTTGTGGCAGCAGAATCGA
325 AGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACAGGACCGAGGGTTGCAGCAGTAGGATCGG
* * * * * * *
16251400 CAGCACACCGAGGGGGACCCTGCT-GATCCCTGGCTTGCGCATCCCGCCCTTCTCGTCGGTTGAG
389 CAGCACACAGAGGGGGACCC-GATCGATCCCTGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAG
* *
16251464 CGCCCGTACGCACGTTTCGTGGGTTGACTTAT-GCATACGGAGTTCATTCCCAGTCTAAGCATAC
453 CG-CC-T--GCACG-CTCGT---TT--C--ATGGC---CTGA---C-TT---AG-----GCATAC
* * * * * * * *
16251528 GAACTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTTGAG
491 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCACATTCTGGGCTCGGG
* * *
16251593 CATGTGCTGGTGCCGCT-TTTTTCTTCACCGAGGCACCATCGCCGGAGCATCGTCGGAGAACCTG
556 CATGTGCTGGTGCCG-TATTTTTCTTCACCGGGGCACCATCGCTGGAGCATCATCGGAGAACCTG
* *
16251657 GCTGGCGGCATTGGGTTCCGACGATCGGAGGGGCAGAGGGGGGTGTGCGCACATGATGTGCGATG
620 ACTGGCGGCATTGGGTTCCGACGATCGGAGGGG--TAGGGGGGTGTGCGCACATGATGTGCGATG
* * *
16251722 GGTGGTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCACCCCCC
683 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCACACCCC
* *
16251787 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGTAATGGGGA
748 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * *
16251852 CACTTTTTTCAAATGGTCACAAAAACTTTTACACTTCGAGTTTTTAGCTGAATTTTTTTTT
813 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * **
16251913 GCGTGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCCTCAAAAAAAA
1 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTC-AAAAAAA
16251978 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCAT-AAAATATAGAAAACGAGTCGTCTT
65 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAA-ATAGAAAACGAGTCGTCTT
* * *
16252042 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTTTATAAAGTTACAAGCCATAAAAATGG-T
129 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCT
** * * * * *
16252106 ATTGGCATGCCAAAATATTAAGATTTTCCTAAACCCACCTACCACCCTATCGATCCACGACTTGT
194 -TTGGCATGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * **
16252171 GCTTCTCGTGTCTCTGGCCGTAGTAGT-CCTCACCCGTCCGCCCGCTCG-T-TTCATCGGTTGGC
258 GCATCCCGTCTCTCTGGCTGGCGTAGTGCC-CACCCGTCCGCCCGCTCGCTGTTCATCGGTTGGC
* * * * * * * *
16252233 TT-AGCCATACGGAGTTCATTCCCAGTCTATGATTGGACAGAACCAAGGGTTACGGCTGTAGGAT
322 TTAAG-CATACGGAGTTCATTCCCAGTCTAAGATCGAACAGGACCGAGGGTTGCAGCAGTAGGAT
* * * * * * *
16252297 CGACAGCACACAGAGTGGGACCCGATCGATCCCCGGCTTCCACATCCCGCCCCTCTGGCCTGCTG
386 CGGCAGCACACAGAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCCACCCCTCTGGCCGGCTG
* * **
16252362 AGCGCC-GCACGCTCGTTCCGTGGAATGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGGAT-
451 AGCGCCTGCACGCTCGTTTCATGGCCTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA-GATC
*
16252425 ATGGAGTTCTTTCCCAGTGTAAGATCAGATCGGACCAAGGGTTGCGATAGCAC-TTGCTGGGCTC
515 A--GA--------CC------AGA-C----C-G----AGGGTTGCGGTAGCACATT-CTGGGCTC
* * * *
16252489 GAGCATGTGCTGGTGCTGCT-TTTTTCTTCACCGAGGCACCATCGCCGGAGCATCATCGGAGAAC
553 GGGCATGTGCTGGTGCCG-TATTTTTCTTCACCGGGGCACCATCGCTGGAGCATCATCGGAGAAC
* *
16252553 CTGGCTGGCGGCATTGGGTTCCGATGATCGGAGGGGTCGAGGGGGGTGTGCGCACATGATGTGCG
617 CTGACTGGCGGCATTGGGTTCCGACGATCGGAGGGGT--AGGGGGGTGTGCGCACATGATGTGCG
*
16252618 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCACCC
680 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCACAC
* *
16252683 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGTAATGG
745 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
16252748 GGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTTGT
810 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
16252812 GCATGCCAACAAAAGTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAA
1 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CTTTCAAAAAAA
* *
16252877 TTTAAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
65 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * *
16252942 TCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCAT
130 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCTT
* * * ** *
16253007 TGGGACGTAGAAATATGAAGATGTGTATAAACCCACCTACCACCCTATTGATCCACGGCTTGCGC
195 TGGCATGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * *
16253072 ATCCTGTCTC-CTTGGCCGGCATAGTGCCCGCCCG-CTCGCCCGCTCG-T-TTCGTCGGTTGCCT
260 ATCCCGTCTCTC-TGGCTGGCGTAGTGCCCACCCGTC-CGCCCGCTCGCTGTTCATCGGTTGGCT
* * * * * *
16253133 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACTGGACCGAGGGTTACAGTAGCAGGATCG
323 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACAGGACCGAGGGTTGCAGCAGTAGGATCG
* * * * * *
16253198 GTAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTACGCATCCCACTCCTCTGACCGGCTGAG
388 GCAGCACACAGAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAG
* * * ** *
16253263 CGCCGGCACACTCGTTTCCTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGA
453 CGCCTGCACGCTCGTTTCATGGCCTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * *
16253328 TCAGACCGAGGGTTACGGTAGCACATTCTGGGCTCGGGCATGTGCTAGTGCCGTATTTTTCTTCG
518 CCAGACCGAGGGTTGCGGTAGCACATTCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCA
* *
16253393 TCGGGGCACCATCGCCAGAGCATAGTCGGAGCATCATCGGAGAACCTGA-TCGACGGCATTGGGG
583 CCGGGGCACCAT---C---GC----T-GGAGCATCATCGGAGAACCTGACT-GGCGGCATT-GGG
* *
16253457 TTCCGACGATCTTG-GGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
635 TTCCGACGATC-GGAGGGGTAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* *
16253521 CCTTATATTGGCCCCCTATCCCTCATCGAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
699 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCACACCCCCTTAAAGAGCATTTGA
* *
16253586 GATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCAGAAATGGGGACACTTTTTTCAAATGG
764 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
16253651 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-T
829 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
16253695 GCATGCCAACAAAAATACAAGGATCACATCTACCAACTTTG
1 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
16253736 TGCATCCCGT
Statistics
Matches: 3055, Mismatches: 371, Indels: 294
0.82 0.10 0.08
Matches are distributed among these distances:
840 1 0.00
841 118 0.04
842 5 0.00
843 1 0.00
844 1 0.00
845 17 0.01
846 4 0.00
849 23 0.01
851 3 0.00
852 2 0.00
853 1 0.00
855 2 0.00
858 1 0.00
859 3 0.00
861 1 0.00
862 2 0.00
863 1 0.00
866 11 0.00
867 132 0.04
868 15 0.00
869 379 0.12
871 2 0.00
873 25 0.01
874 61 0.02
875 4 0.00
876 404 0.13
877 9 0.00
878 12 0.00
879 79 0.03
880 67 0.02
881 4 0.00
882 5 0.00
883 44 0.01
884 217 0.07
885 35 0.01
886 22 0.01
887 4 0.00
888 2 0.00
889 123 0.04
890 4 0.00
891 2 0.00
892 2 0.00
893 267 0.09
894 6 0.00
895 6 0.00
896 18 0.01
898 5 0.00
899 716 0.23
900 187 0.06
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (873 bp):
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCAAAAAAAT
TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCTTT
GGCATGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCTGGCGTAGTGCCCACCCGTCCGCCCGCTCGCTGTTCATCGGTTGGCTTAA
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACAGGACCGAGGGTTGCAGCAGTAGGATCGGCA
GCACACAGAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGC
CTGCACGCTCGTTTCATGGCCTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
GACCGAGGGTTGCGGTAGCACATTCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCG
GGGCACCATCGCTGGAGCATCATCGGAGAACCTGACTGGCGGCATTGGGTTCCGACGATCGGAGG
GGTAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
ATCCCTCATCAAACCTCCAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
CTTCGAGTTTTTAGCTGAATTTTTTTGT
Found at i:16251525 original size:26 final size:26
Alignment explanation
Indices: 16251496--16251548 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16251486 GTTGACTTAT
* *
16251496 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAACTTCATTCCCAGTCTAA
16251522 GCATACGAACTTCATTCCCAGTCTAA
1 GCATACGAACTTCATTCCCAGTCTAA
16251548 G
1 G
16251549 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAACTTCATTCCCAGTCTAA
Found at i:16254881 original size:26 final size:26
Alignment explanation
Indices: 16254845--16254895 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
16254835 ATGACTTAGG
*
16254845 CATACGGAGTTCATTCCCAGTCTAAC
1 CATACAGAGTTCATTCCCAGTCTAAC
16254871 CATACAGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATTCCCAGTCTAA
16254896 GATCAGACCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAC
Found at i:16258521 original size:900 final size:895
Alignment explanation
Indices: 16256623--16260052 Score: 4491
Period size: 899 Copynumber: 3.9 Consensus size: 895
16256613 ATTGACCTAG
* ** *
16256623 GCATACGAAGTTCATT-CCAGTCTAAGATTGGA-TAGGACCGAGGGTTGCGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA-GACCGAGGGTTGCGGCAGCACATGCTGG
* * * * * * *
16256686 GCTCGGGATTGTGCTGGTGCCACATTTTTCTT-TGTCGGGGTACCTTTGTCGGAGCATCGTCGGA
65 GCTCGGCA-TGTGCTGGTGCCGCATTTTTCTTCAGTCGGGGCACCATCGTCGGAGCATCATCGGA
* * * *
16256750 GAACCTGACCGATGGCATTGGGGTTCTGGCGAT--------CGG-GGGGGTGTGCACACATGATG
129 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCGGTGGGGGTGTGCGCACATGATG
*
16256806 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCGAGAACTC
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * * * *
16256871 ACACCTCCTTAAACAGCATTTGAGATTTTACAAGTTTGTTGCCAGCAGCCATTAATGTGTCTGAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * *
16256936 ATGGGGACACTTTTTTCAAATGGTAACAAAATCTTGCACACTTCAAGTTTTTCGCTGAATGTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTT
* * * * *
16257001 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTTCGAAA
389 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCAAAA
* * * * *
16257066 ATATTTTAAAAAATCTCGAACCGTAAAAAATTTTGAAAATCATGAAAAATAGAAAACTAGTCGTC
454 AAATTTTAAAAAATCTCAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATC
*
16257131 TTGCCATGAAACTTCACGTGAAGGCTTCAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
16257196 CATTGGCACACGGAAATATGAAGATGTGCCTAAACCTACCTACCACCCTATCGATCCATGGCTAG
584 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTG
* * * *
16257261 CGCATCCCGTCTCTCTGGTCGGCGTAGT--G-CCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTA
649 CGCATCCCGTCTCTCTGGCCGACGTAGTGCGCCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTA
* * * * *
16257323 GGCATACAGAGTACATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAG-TAGAATCGA
714 GGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGCAGCAAG-ATCGA
* * *
16257387 CAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAACTGGGC
778 CAGCATGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGC
*** *
16257452 GCCC-ACACGCTCGTTTCATGGGTTGACTAATGCATACGGAGTTCATTCCCAGTCGAA
843 GCCCGA-ACGCTCGTTTC-T-GGTTGACTTGGGCATA-TGAGTTCATTCCCAGTC-AA
* *
16257509 GCATACGGAGTTCATTCCTAGTCTAA-ATTCAGACCAGACCAAGGGTTGCGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGA-TCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGG
*
16257573 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCA-TCGGGGCACCATCGTCGGAGCATCGTCGGA
65 GCTC-GGCATGTGCTGGTGCCGCATTTTTCTTCAGTCGGGGCACCATCGTCGGAGCATCATCGGA
* * * *
16257637 GAACCTGACCAACGGCATTGGGGTTCCAACGATCGGGGGGGCTGGCGGGGGTGTGTGCACATGAT
129 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGC-GGTGGGGGTGTGCGCACATGAT
* * *
16257702 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCATCATCAAACCTTGAGAACT
193 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
16257767 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
258 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
16257832 AATCGGGAAACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
323 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTT
* *
16257897 TTATGCATGCCAAAAAAAATACAAGGATCACGTCTA-CAAGTCTGGGGCCAAAACACCTTCCAAA
388 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCAAA
* * * * *
16257961 AAAATTTTAAAATATC-CTGAACCGTAAAAAGTTTTGAAAAGCATGAAAAACAGAAAACAAGTCA
453 AAAATTTTAAAAAATCTC-AAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCA
* * *
16258025 TCTTTCCATGAAACTTCACGTGGAGCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
517 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
** * * *
16258090 GGCATTGGCACGTAGCAATATGAAGATGTTCCTAAACCCACCTACCACCCTATCGATCCACGGCT
582 GGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCT
* * * * *
16258155 CGTGCATCCCGTCTCTCTGGTCGGCGTAGTGCGCCCCCTCCCGCCCGCTCATTTCGTCGGTTGGC
647 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCG-CCCCGCCCGCCCGCTCATTTCGTCGGTTGGC
** * * * * * *
16258220 TTAGGCATATGGAGTTCATTCCCACTCAAAGATTGTACCAGACCGAGGGTTGTGGCAGCAAGATC
711 TTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGCAGCAAGATC
** * * * * **
16258285 GGTAGCATGCAGAGGGGGACCCGGCCAATCCCCGGGTTGTGCATCCCGCCCCTCTGGCTGGCTGA
776 GACAGCATGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGA
*
16258350 GTGCCCGAACGCTCGTTTCTTGTGTTGACTTGGGCATATGAAGTTCATTCCCAGTCTAA
841 GCGCCCGAACGCTCGTTTC-TG-GTTGACTTGGGCATATG-AGTTCATTCCCAGTC-AA
* *
16258409 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
16258474 CTCCGGCATGTGCTGGTGCCGTATTTTTCTTCACT-AGGGCGCCATCGTCGGAGCATCACCGGAG
66 CT-CGGCATGTGCTGGTGCCGCATTTTTCTTCAGTCGGGGCACCATCGTCGGAGCATCATCGGAG
* * *
16258538 AACCTGACCGACGGCATTGGGGTTCTGACGA-AGGGGAGGCTGGTGGGGGTGTGCGCACATGATG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGC-GGTGGGGGTGTGCGCACATGATG
* *
16258602 TGC-AGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATTAAACCTCCAGAACT
194 TGCGA-TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
** *
16258666 CACACCCCCTTAAAGAGCATTTGTCATTTTACAGGTTTGCTGCCAGTAGCCATTAACGTGTCTG-
258 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
16258730 AATGGGGACACTTTTTTCAAGTGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTT
323 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTT
16258795 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCAAA
388 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCAAA
*
16258860 AAAATTTTAAAATATCTCAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGT-AG
453 AAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCA-
* * *
16258924 TCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAATT
517 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
** * * *
16258989 ATCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCA-CTGACCACCCTACCAATCCAAGGC
582 GGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCT-ACCACCCTATCGATCCAAGGC
* * * * *
16259053 TTGCGCATCTCGTCTCTCTGGCCGACGTAGTGCTCACCCGCGCACCCGCTCGTTTCGTCGGTTGG
646 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCGC-CCCGCCCGCCCGCTCATTTCGTCGGTTGG
* * * * * *
16259118 CTTAGGCATACAGAGTTCATTCCCAGTCTAATATCGGATCAGATTGAGGGTTACGGTAGCAGGAT
710 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGCAGCAAGAT
* * * * *
16259183 CGACAGCATGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCTTCCCGCCCCTCTGGCCCGCTA
775 CGACAGCATGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTG
* * *
16259248 AACGTCCGCACGCTCGTTTC-----G---TGGG--T-TGA---C-TT---AG----
840 AGCGCCCGAACGCTCGTTTCTGGTTGACTTGGGCATATGAGTTCATTCCCAGTCAA
* * *
16259282 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
16259347 CTCGAGCATGTGCTGGTGCCGTAGTTTTCTTC-GTCGGGGCACCATCGTCGGAGCATCATCGGAG
66 CTCG-GCATGTGCTGGTGCCGCATTTTTCTTCAGTCGGGGCACCATCGTCGGAGCATCATCGGAG
* * * * * * * *
16259411 AACCTGACTGGCAGG-ATTGGGGTCCCGGCGATCAGGGGGGCCGTGGGGGGTGTGCACACTTGAT
130 AACCTGACCGAC-GGCATTGGGGTTCCGACGATCGGGGGGGCGGT-GGGGGTGTGCGCACATGAT
* * *
16259475 GTGTGATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
193 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * ** *
16259540 CACACCCCTTTAAAGAGCATTTCAGATTTCCCAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGG
258 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
16259605 AATGGGGACACTTTTTTCAAATGCTCACAAAATCTTGTACACTTCTAGTTTTTAGCTGAATGTTT
323 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTT
* * * *
16259670 TTGTCCATGCGAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-ATCCTTCC-G
388 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACA-CCTTCCAA
* * * *
16259733 AAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGCCG
452 AAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCA
* * *
16259798 TCTTGCCATTAAAATTTACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
517 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
** ** *
16259863 GGCATTTCCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAGGGCT
582 GGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCT
* *
16259928 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCTCGCCCGCCCGCCCGCTGATTTCGTCGGTTGGC
647 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCGC-CCCGCCCGCCCGCTCATTTCGTCGGTTGGC
*
16259993 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGCAGCA
711 TTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGCAGCA
16260053 CATGCTGGGC
Statistics
Matches: 2248, Mismatches: 253, Indels: 98
0.86 0.10 0.04
Matches are distributed among these distances:
872 3 0.00
873 141 0.06
874 426 0.19
875 121 0.05
878 2 0.00
881 2 0.00
882 1 0.00
885 1 0.00
886 18 0.01
887 120 0.05
888 4 0.00
889 4 0.00
892 1 0.00
895 2 0.00
896 227 0.10
897 229 0.10
898 102 0.05
899 517 0.23
900 321 0.14
901 6 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (895 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGCATGTGCTGGTGCCGCATTTTTCTTCAGTCGGGGCACCATCGTCGGAGCATCATCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCGGTGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTG
TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCAAAAAA
ATTTTAAAAAATCTCAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCG
CATCCCGTCTCTCTGGCCGACGTAGTGCGCCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGG
CATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGCAGCAAGATCGACAG
CATGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCC
CGAACGCTCGTTTCTGGTTGACTTGGGCATATGAGTTCATTCCCAGTCAA
Found at i:16260643 original size:712 final size:713
Alignment explanation
Indices: 16259258--16260764 Score: 2224
Period size: 712 Copynumber: 2.1 Consensus size: 713
16259248 AACGTCCGCA
* * * *
16259258 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCG
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTG
* *
16259323 AGGGTTGTGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTAGTTTTCTTCGTCGGGGCA
66 AGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCAGTTTTCTTCGTCGGGGCA
* * * * * * *
16259388 CCATCGTCGGAGCATCATCGGAGAACCTGACTGGCAGGATTGGGGTCCCGGCGATCAGGGGGGCC
131 CCATCATCGCAGCATCATCGGAGAACCTGACCGACAGGATTGAGGTCCCGACGAACAGGGGGGCC
* * *
16259453 GTGGGGGGTGTGCACACTTGATGTGTGATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTAT
196 G-GGGGGGTGTGCACACATGATGTGAGATGGGTGCCGGTACTTGGCCCATATATTGGCCCCCTAT
** * * *
16259518 CCCTCATCAAACCTTGAGAACTCACACCCCTTTAAAGAGCATTTCAGATTTCCCAGGTTTGCTGC
260 CCCTCATCAAACCTCCAGAACTCACACCCCCTTAAAGAGCATTTCACATTTCACAGGTTTGCTGC
*
16259583 CAGTAGCCATTAAAGTGTCTGGAATGGGGACACTTTTTTCAAATGCTCACAAAATCTTGTACACT
325 CAGTAGCCATTAAAGTGTCTGGAATGGGGACACCTTTTTCAAATGCTCACAAAATCTTGTACACT
* * * *
16259648 TCTAGTTTTTAGCTGAATGTTTTTGTCCATGCGAAGAAAAATACAAGGATCACGTCTACCAAGTT
390 TCGAGTTTTTAGCTGAATATTTTTGTCCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTT
*
16259713 TGGGGCCAAAAATCCTTCCGAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTTGAAAATCAT
455 TGGGGCCAAAAATCCTTCCAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTTGAAAATCAT
* *
16259778 GAAAAATAGAAAACGAGCCGTCTTGCCATTAAAATTTACGTGAAGGCTTAAGGGACCATTGTATG
520 GAAAAATAGAAAACGAGCAGTCTTGCCATTAAAATTCACGTGAAGGCTTAAGGGACCATTGTATG
* *
16259843 AATTTACAAGCCATAAAAATGGCATTTCCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
585 AATTTACAAGCCATAAAAATAGCATTGCCAT-CAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * *
16259908 CACCCTATCGATCCAGGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCTCGCCCGCCCGCC
649 CACCCTACCAATCCAAGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCTCGCCCGCCCACC
16259973 CGCT-GATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACT
1 CGCTCG-TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACT
* * *
16260037 GAGGGTTGCGGCAGCACATGCTGGGCTC-AGGCATTTGCTGGTGCTGCATTTTTCTTCGTCGGGG
65 GAGGGTTGCGGCAGCACATGCTGGGCTCGA-GCATGTGCTGGTGCCGCAGTTTTCTTCGTCGGGG
* * ** * *
16260101 TACCATCATCGCAGTATTGTCGGAGAACCTGACCGAC-GATATTGAGGTTCCGACGAAC-GGGGG
129 CACCATCATCGCAGCATCATCGGAGAACCTGACCGACAG-GATTGAGGTCCCGACGAACAGGGGG
* *
16260164 GCC-GGGGGGTGTGCGCACATGATGTGCAG-TGGGTGCTGGTACTTGGCCCATATATTGGCCCCC
193 GCCGGGGGGGTGTGCACACATGATGTG-AGATGGGTGCCGGTACTTGGCCCATATATTGGCCCCC
* ** *
16260227 TATCCCTCATTAAACCTCCAGAACTCACACCCCCTTAAAGAGCATTTGTCATTTTACAGGTTTGC
257 TATCCCTCATCAAACCTCCAGAACTCACACCCCCTTAAAGAGCATTTCACATTTCACAGGTTTGC
* * *
16260292 TGCCAGTAGCCATTAACGTGTCT-GAATGGGGACACCTTTTTCAAGTGGTCACAAAATCTTGTAC
322 TGCCAGTAGCCATTAAAGTGTCTGGAATGGGGACACCTTTTTCAAATGCTCACAAAATCTTGTAC
*
16260356 ACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
387 ACTTCGAGTTTTTAGCTGAATATTTTTGTCCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
* * *
16260421 GTTTGGGGCCAAAACA-CCTTCCAAAAAAATTTTAAAATATCTCAAACCGTAAAAAGTTTTGAAA
452 GTTTGGGGCCAAAA-ATCCTTCC-AAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTTGAAA
* *
16260485 ATCATGAAAAATAGAAAACGAGTAGTCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATT
515 ATCATGAAAAATAGAAAACGAGCAGTCTTGCCATTAAAATTCACGTGAAGGCTTAAGGGACCATT
* * *
16260550 TTATGAATTTACAAGCCATAAAATTATCATTGGCACAT-AGAAATATGAAGATGTGCCTAAACCC
580 GTATGAATTTACAAGCCATAAAAATAGCATT-GC-CATCAGAAATATGAAGATGTGCCTAAACCC
*
16260614 A-CTGACCACCCTACCAATCCAAGGCTTGCGCATCTCGTCTCTCTGGCCGACGTAGTGCTCGCCC
643 ACCT-ACCACCCTACCAATCCAAGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCTCGCCC
16260678 GCCCACC
707 GCCCACC
* * * *
16260685 CGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAATATCGGATCAGATTG
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTG
* *
16260750 AGGGTTACGGTAGCA
66 AGGGTTGCGGCAGCA
16260765 GGATCGGCAG
Statistics
Matches: 713, Mismatches: 69, Indels: 23
0.89 0.09 0.03
Matches are distributed among these distances:
711 120 0.17
712 418 0.59
713 3 0.00
714 14 0.02
715 158 0.22
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (713 bp):
CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTG
AGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCAGTTTTCTTCGTCGGGGCA
CCATCATCGCAGCATCATCGGAGAACCTGACCGACAGGATTGAGGTCCCGACGAACAGGGGGGCC
GGGGGGGTGTGCACACATGATGTGAGATGGGTGCCGGTACTTGGCCCATATATTGGCCCCCTATC
CCTCATCAAACCTCCAGAACTCACACCCCCTTAAAGAGCATTTCACATTTCACAGGTTTGCTGCC
AGTAGCCATTAAAGTGTCTGGAATGGGGACACCTTTTTCAAATGCTCACAAAATCTTGTACACTT
CGAGTTTTTAGCTGAATATTTTTGTCCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT
GGGGCCAAAAATCCTTCCAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTTGAAAATCATG
AAAAATAGAAAACGAGCAGTCTTGCCATTAAAATTCACGTGAAGGCTTAAGGGACCATTGTATGA
ATTTACAAGCCATAAAAATAGCATTGCCATCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
CCCTACCAATCCAAGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCTCGCCCGCCCACC
Found at i:16262231 original size:712 final size:714
Alignment explanation
Indices: 16260844--16262352 Score: 2171
Period size: 712 Copynumber: 2.1 Consensus size: 714
16260834 AACGCCTGCA
* * * *
16260844 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCG
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTG
* **
16260909 AGGGTTGTGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTAGTTTTCTTCGTCGGGGCA
66 AGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACAGTTTTCTTCGTCGGGGCA
** * * * *
16260974 CCATCGTCGGACCATCATCGGAGAACCTGACTGGCAGGATTGGGGTCCCGGCGATCAGGGGGGCC
131 CCATCACCGCACCATCATCGGAGAACCTGACCGGCAGGATTGAGGTCCCGACGAT-AGGGGGGCC
* * *
16261039 GTGGGGGGTGTGCACACTTGATGTGTGATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTAT
195 G-GGGGGGTGTGCACACATGATGTGAGATGGGTGCCGGTACTTGGCCCATATATTGGCCCCCTAT
** * * *
16261104 CCCTCATCAAACCTTGAGAACTCACACCCCTTTAAAGAGCATTTCAGATTTCCCAGGTTTGCTGC
259 CCCTCATCAAACCTCCAGAACTCACACCCCCTTAAAGAGCATTTCACATTTCACAGGTTTGCTGC
* *
16261169 CAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
324 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACT
* * *
16261234 TCTAGTTTTTAGCTGAATGTTTTTGTCCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTT
389 TCGAGTTTTTAGCTGAATATTTTTGTCCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
16261299 TGGGGCCAAAACTACTTCCGAAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATC
454 TGGGGCCAAAACTACTTCCGAAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATC
* *
16261364 ATGAAAAATAGAAAACGAGCCGTCTTGCCATTAAAATTTACGTGAAGGCTTAAGGGACCATTGTA
519 ATGAAAAATAGAAAACGAGCAGTCTTGCCATTAAAATTCACGTGAAGGCTTAAGGGACCATTGTA
* *
16261429 TGAATTTACAAGCCATAAAAATGGCATTTCCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
584 TGAATTTACAAGCCATAAAAATAGCATTGCCAT-CAGAAATATGAAGATGTGCCTAAACCCACCT
* * * *
16261494 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCTCGCCCGCCCG
648 ACCACCCTACCAATCCAAGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCTCGCCCGCCCA
16261559 CC
713 CC
16261561 CGCT-GATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACT
1 CGCTCG-TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACT
* * *
16261625 GAGGGTTGCGGCAGCACATGCTGGGCTC-AGGCATTTGCTGGTGCTACATTTTTCTTCGTCGGGG
65 GAGGGTTGCGGCAGCACATGCTGGGCTCGA-GCATGTGCTGGTGCCACAGTTTTCTTCGTCGGGG
* * ** * *
16261689 TACCATCACCGCAGCATTGTCGGAGAACCTGACC-G-ATGATATTGAGGTTCCGACGA-ATGGGG
129 CACCATCACCGCACCATCATCGGAGAACCTGACCGGCA-G-GATTGAGGTCCCGACGATA-GGGG
* *
16261751 GGCC-GGGGGGTGTGCGCACATGATGTGCAG-TGGGTGCTGGTACTTGGCCCATATATTGGCCCC
191 GGCCGGGGGGGTGTGCACACATGATGTG-AGATGGGTGCCGGTACTTGGCCCATATATTGGCCCC
* ** *
16261814 CTATCCCTCATTAAACCTCCAGAACTCACACCCCCTTAAAGAGCATTTGTCATTTTACAGGTTTG
255 CTATCCCTCATCAAACCTCCAGAACTCACACCCCCTTAAAGAGCATTTCACATTTCACAGGTTTG
* *
16261879 CTGCCAGTAGCCATTAACGTGTCT-AAATGGGGACACCTTTTTCAAGTGGTCACAAAATCTTGTA
320 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTA
* * *
16261943 CACTTCGGGTTTTTAGTTGAATATTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
385 CACTTCGAGTTTTTAGCTGAATATTTTTGTCCATGCCAACAAAAATACAAGGATCACGTCTACCA
*
16262008 AGTTTGGGGCCAAAAC-ACCTTCC-AAAAAAATTTTAAAATAT-CTCGAACCGTAAAAAGTTTTG
450 AGTTTGGGGCCAAAACTA-CTTCCGAAAAAAATTTTAAAAAATCCT-GAACCGTAAAAAGTTTTG
* *
16262070 AAAATCATGAAAAATAGAAAACGAGTAGTCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGACC
513 AAAATCATGAAAAATAGAAAACGAGCAGTCTTGCCATTAAAATTCACGTGAAGGCTTAAGGGACC
* * *
16262135 ATTTTATGAATTTACAAGCCATAAAATTATCATTGGCACAT-AGAAATATGAAGATGTGCCTAAA
578 ATTGTATGAATTTACAAGCCATAAAAATAGCATT-GC-CATCAGAAATATGAAGATGTGCCTAAA
* *
16262199 CCCA-CTGACCACCCTACCAATCCAAGGCTTGCGCATCTCGTCTCTCTGGCCGATGTAGTGCTCG
641 CCCACCT-ACCACCCTACCAATCCAAGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCTCG
16262263 CCCGCCCACC
705 CCCGCCCACC
* * * * * *
16262273 TGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAATATCGAATCAGATTG
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTG
* *
16262338 AGGGTTACGGTAGCA
66 AGGGTTGCGGCAGCA
16262353 GGATCGGCAG
Statistics
Matches: 710, Mismatches: 70, Indels: 29
0.88 0.09 0.04
Matches are distributed among these distances:
711 4 0.01
712 285 0.40
713 120 0.17
714 133 0.19
715 3 0.00
716 12 0.02
717 153 0.22
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (714 bp):
CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTG
AGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACAGTTTTCTTCGTCGGGGCA
CCATCACCGCACCATCATCGGAGAACCTGACCGGCAGGATTGAGGTCCCGACGATAGGGGGGCCG
GGGGGGTGTGCACACATGATGTGAGATGGGTGCCGGTACTTGGCCCATATATTGGCCCCCTATCC
CTCATCAAACCTCCAGAACTCACACCCCCTTAAAGAGCATTTCACATTTCACAGGTTTGCTGCCA
GTAGCCATTAAAGTGTCTGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTC
GAGTTTTTAGCTGAATATTTTTGTCCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
GGGCCAAAACTACTTCCGAAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCAT
GAAAAATAGAAAACGAGCAGTCTTGCCATTAAAATTCACGTGAAGGCTTAAGGGACCATTGTATG
AATTTACAAGCCATAAAAATAGCATTGCCATCAGAAATATGAAGATGTGCCTAAACCCACCTACC
ACCCTACCAATCCAAGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCTCGCCCGCCCACC
Found at i:16265102 original size:26 final size:26
Alignment explanation
Indices: 16265072--16265121 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
16265062 GTTGACTTAG
16265072 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
16265098 GCATATGGTGTTCATTCCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
16265122 GAGATCGAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16265834 original size:26 final size:26
Alignment explanation
Indices: 16265798--16265850 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16265788 GTTGGCTTAG
16265798 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16265824 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16265850 G
1 G
16265851 ATCAGACTAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16266711 original size:9 final size:9
Alignment explanation
Indices: 16266697--16266726 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
16266687 GGTGATTGGG
16266697 GGGCCGGGA
1 GGGCCGGGA
16266706 GGGCCGGGA
1 GGGCCGGGA
16266715 -GGCCGGGA
1 GGGCCGGGA
16266723 GGGC
1 GGGC
16266727 GTGTGCGCAC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 8 0.40
9 12 0.60
ACGTcount: A:0.10, C:0.23, G:0.67, T:0.00
Consensus pattern (9 bp):
GGGCCGGGA
Found at i:16266928 original size:728 final size:724
Alignment explanation
Indices: 16265252--16267218 Score: 2624
Period size: 735 Copynumber: 2.7 Consensus size: 724
16265242 GGCGATCGGG
*
16265252 GGGGCCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
1 GGGGCCGGGGGGGTGTGCACACATGATGTGCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCC
*
16265317 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTT
66 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* *
16265382 GCTGCCAGTAGCCGTTAAAGTATCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
131 GCTGCCAGTAGCCATTAAAGTATCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
*
16265447 ACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACC
196 ACACTTCGAGTTTTTAGCT-AATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACC
* *
16265511 AAGTTTAGGGC-CAAAACTCCTTCCGAAAAAAGTTTAAAAAAGTCTCGAACAGCAAAAAGTTTCA
260 AAGTTT-GGGCGCAAAACTCCTTCCGAAAAAA-TTTAAAAAA-TCTCGAACCGTAAAAAGTTTCA
*
16265575 AAAATCAAGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
322 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
*
16265640 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCACACATG-AATATAAAGATGTACCTAAA
387 ATTGTATGAATTTACAAGCCATAAAAATGGCATTG-CACACA-GAAATATGAAGATGTACCTAAA
* *
16265704 CCCACCTACCACCCTATCGATCCTATGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCGC
450 CCCACCTACCACCCTATCGATCC-AGGCTTGCGCAT-CCGTCTCTCTGGCCGACGTAGTGCTCGC
* ** * * * *
16265769 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
513 CCGCCCGCCCGTCCCGCCCGCT-GCTTA-GCATACGGAG-T--TTCCCA-TCTAAGCATACGAAG
* *
16265834 TTCATTCCCAGTCTAAGATCAGACTAGACCGAGGATTGTGGTAGCACATGTTGGGCTCAGGCATG
572 TTCATTCCCAGTCTAAGATCAGACTAGACCAAGGATTGTGGCAGCACATGTTGGGCTCAGGCATG
* * * * * *
16265899 TGCTGGTGCTGTATTTTTCTTCACCGGGGCACCATCGCAGGAGCATCGTCGGAGAACCTAACCGA
637 TGCAGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCAGGAGAATCGCCGGAG-ACATAACCGA
** *
16265964 CGGCATTGGGCTTCCGACGATCGA
701 CGGCATTGGGCGGCCGACGACCGA
*
16265988 GGGGCC-GGGGGGTGTGCACACATGATGTGCGATAGGTGCTGGTACTTGGCCCTTATATTGGTCC
1 GGGGCCGGGGGGGTGTGCACACATGATGTGCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCC
16266052 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
66 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* *
16266117 GCTGCCAGTAGCCATTAAAGTGTCCGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
131 GCTGCCAGTAGCCATTAAAGTATCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * * *
16266182 ACACTTCGAGTTTTTAGCTCATTTTTTTGTGCATGCCAACAACAATAAAAGGATCACGTCTACCA
196 ACACTTCGAGTTTTTAGCTAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCA
*
16266247 AGTTTGGGCGCAAAACTCCTTCTGAAAAAATTTCAAAAAATCTCGAACCGTAAAAAGTTTCAAAA
261 AGTTTGGGCGCAAAACTCCTTCCGAAAAAATTT-AAAAAATCTCGAACCGTAAAAAGTTTCAAAA
* * *
16266312 TTCATGAAAAATAGAAAACGAGTCGTCTTGACATGAAACTTCACGTCAAGGCTTAAGGGACCATT
325 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* * *
16266377 GTATGAATTTACAAGCCATAAAAATGGCATTAGCACATAGAAATATGAAGATGTGCATAAACCCA
390 GTATGAATTTACAAGCCATAAAAATGGCATT-GCACACAGAAATATGAAGATGTACCTAAACCCA
* *
16266442 CCTACCACCCTATCGATCCACGGCTTGCGCATCCATCTCTCTGGCCGACGTAGTGGC-CGCTCGC
454 CCTACCACCCTATCGATCCA-GGCTTGCGCATCCGTCTCTCTGGCCGACGTAGT-GCTCGCCCGC
* ** * *
16266506 CCGCCCG-CCCGCCCGCT-CATT-TCAT-C-G-G-TTGGC-T-TAGGCATACGAAGTTCATTCCG
517 CCGCCCGTCCCGCCCGCTGC-TTAGCATACGGAGTTTCCCATCTAAGCATACGAAGTTCATTCCC
* *
16266562 AGTCTAAGATCAGA-TCAGACCAAGGGTTGTGGCAGCACATGTTGGGCTCGGGCATGTGCAGGTG
581 AGTCTAAGATCAGACT-AGACCAAGGATTGTGGCAGCACATGTTGGGCTCAGGCATGTGCAGGTG
** * * * * ** **
16266626 CCGCATTTTTCTTCGTCGGGGTACCATCGCCGGAGAACTTGACCGGCAG-CATTAGGGTTTTGGT
645 CCGCATTTTTCTTCACCGGGGCACCATCGCAGGAGAA-TCG-CCGG-AGACATAACCG--ACGG-
* * * *
16266690 GATTGGGGGGCCGGGAGGGCCG-
704 CATTGGGCGGCC--GACGACCGA
* * * * *
16266712 GGAGGCCGGGAGGGCGTGTGCGCACATGATGTGCGGTCGGTGCTAGTACTTGGCCCTTACATTGG
1 GG-GGCCGGG-GGG-GTGTGCACACATGATGTGCGATAGGTGCTGGTACTTGGCCCTTATATTGG
* * *
16266777 CCCCCTATCCCTCATCAAACCTTGAGAACTCACATCCCCTTAAAGAGCATTTCAGATTTTACAGG
63 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* * * *
16266842 TTTCCTTCCAGTAGCCATTAAAGTATTTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCT
128 TTTGCTGCCAGTAGCCATTAAAGTATCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
*
16266907 TGTACACTGT-GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTC
193 TGTACACT-TCGAGTTTTTAGCT-AATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTC
* *
16266971 TACCAAGTTTGGG-GCCAAAACCCCTTCCGAAAAAATGTTAAAAAATCCCGAACCGTAAAAAGTT
256 TACCAAGTTTGGGCG-CAAAACTCCTTCCGAAAAAAT-TTAAAAAATCTCGAACCGTAAAAAGTT
* *
16267035 T-AAAAACTCATAAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
319 TCAAAAA-TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
* ** *
16267099 GACCATTGTTTGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTCCCT
383 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATT-GCACACAGAAATATGAAGATGTACCT
* * *
16267164 AAACCCACCTACCACCTTATCGATCCATGGCTTGAGCATCTCGTCTCTCTAGCCG
447 AAACCCACCTACCACCCTATCGATCCA-GGCTTGCGCATC-CGTCTCTCTGGCCG
16267219 GTATAGTGCC
Statistics
Matches: 1099, Mismatches: 105, Indels: 60
0.87 0.08 0.05
Matches are distributed among these distances:
718 1 0.00
719 106 0.10
720 7 0.01
721 3 0.00
722 7 0.01
723 8 0.01
724 2 0.00
725 9 0.01
726 3 0.00
727 4 0.00
728 191 0.17
729 245 0.22
730 15 0.01
731 2 0.00
732 5 0.00
733 34 0.03
734 180 0.16
735 271 0.25
736 6 0.01
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26
Consensus pattern (724 bp):
GGGGCCGGGGGGGTGTGCACACATGATGTGCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCC
CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
GCTGCCAGTAGCCATTAAAGTATCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
ACACTTCGAGTTTTTAGCTAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCA
AGTTTGGGCGCAAAACTCCTTCCGAAAAAATTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAA
TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
TATGAATTTACAAGCCATAAAAATGGCATTGCACACAGAAATATGAAGATGTACCTAAACCCACC
TACCACCCTATCGATCCAGGCTTGCGCATCCGTCTCTCTGGCCGACGTAGTGCTCGCCCGCCCGC
CCGTCCCGCCCGCTGCTTAGCATACGGAGTTTCCCATCTAAGCATACGAAGTTCATTCCCAGTCT
AAGATCAGACTAGACCAAGGATTGTGGCAGCACATGTTGGGCTCAGGCATGTGCAGGTGCCGCAT
TTTTCTTCACCGGGGCACCATCGCAGGAGAATCGCCGGAGACATAACCGACGGCATTGGGCGGCC
GACGACCGA
Found at i:16267456 original size:26 final size:26
Alignment explanation
Indices: 16267420--16267472 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16267410 GTTGACTTAG
16267420 GCATATGGAGTTCATTCCC-AGTCTAA
1 GCATATGGAGTTCATTCCCGA-TCTAA
16267446 GCATATGGAGTTCATTCCCGATCTAA
1 GCATATGGAGTTCATTCCCGATCTAA
16267472 G
1 G
16267473 ATCAAATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCGATCTAA
Found at i:16268336 original size:26 final size:26
Alignment explanation
Indices: 16268307--16268359 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16268297 GTTGACTTAG
*
16268307 GCATACGGAGTTCATTCCCGGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16268333 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16268359 G
1 G
16268360 ATCAAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16268848 original size:895 final size:889
Alignment explanation
Indices: 16266727--16269086 Score: 3145
Period size: 880 Copynumber: 2.7 Consensus size: 889
16266717 CCGGGAGGGC
* *
16266727 GTGTGCGCACATGATGTGCGGTCGGTGCTAGTACTTGGCCCTTACATTGGCCCCCTATCCCTCAT
1 GTGTGCGCACATGATGTGCGAT-GGTGCT-GTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* * * * *
16266792 CAAACCTTGAGAACTCACATCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTCCTTC-CAGTAG
64 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTCAGTAG
* * *
16266856 CCATTAAAGTATTTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTGT-GAG
129 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT-TCGAG
* * *
16266920 TTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGG
193 TTTTTAGCTGAATTCTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * * * *
16266985 CCAAAACCCCTTCCGAAAAAATGTTAAAAAATCCCGAACCGTAAAAAGTTT-AAAAACTCATAAA
258 CCAAAACTCCTTCCGAAAAAATTTTTAAAAATCCCGAACCGTAAAAAGTTTCAAAAA-TCTTGAA
* *
16267049 AAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAAT
322 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
16267114 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT-CCCTAAACCCACCTACCA
387 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCC-AAACCCACCTACCA
* * *
16267178 CCTTATCGATCCATGGCTTGAGCAT-CTCGTCTCTCTAGCCG-GTATAGTG-C-CCACCCGCT--
451 CCCTATCGATCCATGGCTTGCGCATCCT-GTCTCTCTAGCCGCG--TAGTGCCGCCGCCCGCTCC
* * * **
16267237 CGCTCGTTTCATCGATTGTCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTT
513 CGCTCGTTTCGTCG-TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCG
* * * * *
16267302 AGCGTCATGGTAGCAGGACCGGCAGCACACAGAGGAGGACCCGACCGATCCCCGGCTTGCACATC
577 AGGGTTACGATAGCAGGACCGGCAGCACACAGAGGAGGACCCGACCAATCCCCGGCTTGCACATC
* * * ** * *
16267367 CTGCCCTTCTGTTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTT
642 CCGCCCCTATGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* * * **
16267432 CATTCCCAGTCTAAGCATATGGAGTTCATTCCCGATCTAAGATCAAATCGGATTGAGGGTTGTGA
707 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCGATCTAAGATCAAACCAGACCGAGGGTTGTGA
* * * *
16267497 CAGCAAATGCTGGGCTCGGGTATGTACTGGTACTGTATTTTTCTTCACCGGGGCACCATCGCCGG
772 CAGCAAATGCTAGGCTCGGGTATGTACTGGTACAGCATTTTTCTTCACCAGGGCACCAT--CC-G
**** *
16267562 AGCATCATCGGAGAACCTGACCGACGACATTGGGGTTCTGGCGATCGGGGGGACCGGGGGG
834 -G----ATCGGAGAACCTGACCGACGACATTGGGGTTCCAAAGATCGGGGGGACCGCGGGG
*
16267623 GTGTGTGCACATGATGTGC-A---------A--T-GCCC-TATATTGGCCCCCTATCCCTCATCA
1 GTGTGCGCACATGATGTGCGATGGTGCTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* * *
16267674 AACCTCGAAAACTAACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGC-CAGTAGCC
66 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTCAGTAGCC
*
16267738 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTT
131 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* *
16267803 TTAGCTGAATTCTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCA
196 TTAGCTGAATTCTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
** * *
16267868 AAACTTATTCCAAAAAAATTTTTAAAAATCTCGAACCGTAAAAAGTTTCAAAAAT-TGTGAAAAA
261 AAACTCCTTCCGAAAAAATTTTTAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCT-TGAAAAA
* *
16267932 TAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGTACCATTGTATGAATTTA
325 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
*
16267997 CAAGCCATAAAAATGGCATTGGCAGGCAGAAATATGAAGATGTGCCCAAACCCACCTACCACCCT
390 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCCAAACCCACCTACCACCCT
* *
16268062 ATCGATCCACGGCTTGCGCATCCTGTCTCTCTAGCCGCGTAGTGCCGACTCGCCCGTCTACCCAC
455 ATCGATCCATGGCTTGCGCATCCTGTCTCTCTAGCCGCGTAGTGCCG-C-CGCCCG-CT-CCCGC
* * * * *
16268127 TTGTTTCGTCAGTTGGCTTAGGCATATGGAGTTCATTCCCAATCTGAGATTGGACCAGACCGAGG
516 TCGTTTCGTC-GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGG
* * * * ** *
16268192 GTTACGATAGTAGGATCGGCAGCACGCAGAGGGGGACCCGACCAATCCTTGGCTTGCGCATCCCG
580 GTTACGATAGCAGGACCGGCAGCACACAGAGGAGGACCCGACCAATCCCCGGCTTGCACATCCCG
*
16268257 CCCCTATGGCCGACTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
645 CCCCTATGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* *
16268322 TCCCGGTCTAAGCATACGGAGTTCATTCCC-AGTCTAAGATCAAACCAGACCGAGGGTTGTGGCA
710 TCCCAGTCTAAGCATACGGAGTTCATTCCCGA-TCTAAGATCAAACCAGACCGAGGGTTGTGACA
** *
16268386 GCACAA-GCTAGGCTCGGGCT-TGTGTTGGTGCAGCATTTTTCTTCACCAGGGCACCAT-C-G-T
774 GCA-AATGCTAGGCTCGGG-TATGTACTGGTACAGCATTTTTCTTCACCAGGGCACCATCCGGAT
* *
16268446 CGGAGAACCTGACCGGCGACATTGGGGTTCCAAAGATCGGGGCGG-CCGCGTGG
837 CGGAGAACCTGACCGACGACATTGGGGTTCCAAAGATCGGGG-GGACCGCGGGG
*
16268499 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCCCAT
1 GTGTGCGCACATGATGTGCGAT-GGTGCT-GTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
*
16268564 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGT
64 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCT--CAGT
* * *
16268629 AGCCTTTAAAGTGTCTGAAATGGAGACACTTTTTTCAAATAGTCACAAAATCTTGTACACTTCGA
127 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* *
16268694 GTTTTTAGCTGAATTGTTTTGTACATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
192 GTTTTTAGCTGAATTCTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* *
16268759 GCCAAAAATCCTTTCGAAAAAATTTTTAAAAATCCCGAA-CGATAAAAAGTTTCAAAAATCTTGA
257 GCCAAAACTCCTTCCGAAAAAATTTTTAAAAATCCCGAACCG-TAAAAAGTTTCAAAAATCTTGA
*
16268823 AAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
321 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * * *
16268888 TTTACAAGTCATAAAAATGGCATTCGCATGCAGAAATATGAAGATGTGCCTAAACCCTCCTACCA
386 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCCAAACCCACCTACCA
* * * * *
16268953 CCCTATCAATCCATGGCTTGCACATCCAGTCTTTCTGGCCGGCGTAGTGCCCGCCCGCCCG--CC
451 CCCTATCGATCCATGGCTTGCGCATCCTGTCTCTCTAGCC-GCGTAGTG-CCG-CCGCCCGCTCC
* *
16269016 CGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
513 CGCTCGTTTCGTC-GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCG
16269081 AGGGTT
577 AGGGTT
16269087 GCTGCAGCAC
Statistics
Matches: 1288, Mismatches: 134, Indels: 88
0.85 0.09 0.06
Matches are distributed among these distances:
876 62 0.05
877 3 0.00
879 6 0.00
880 400 0.31
881 16 0.01
882 2 0.00
883 5 0.00
884 4 0.00
886 1 0.00
887 265 0.21
888 5 0.00
890 1 0.00
891 4 0.00
892 141 0.11
894 2 0.00
895 334 0.26
896 33 0.03
897 4 0.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.26
Consensus pattern (889 bp):
GTGTGCGCACATGATGTGCGATGGTGCTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTCAGTAGCC
ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
TTAGCTGAATTCTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
AAACTCCTTCCGAAAAAATTTTTAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCTTGAAAAAT
AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCCAAACCCACCTACCACCCTA
TCGATCCATGGCTTGCGCATCCTGTCTCTCTAGCCGCGTAGTGCCGCCGCCCGCTCCCGCTCGTT
TCGTCGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACG
ATAGCAGGACCGGCAGCACACAGAGGAGGACCCGACCAATCCCCGGCTTGCACATCCCGCCCCTA
TGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
TCTAAGCATACGGAGTTCATTCCCGATCTAAGATCAAACCAGACCGAGGGTTGTGACAGCAAATG
CTAGGCTCGGGTATGTACTGGTACAGCATTTTTCTTCACCAGGGCACCATCCGGATCGGAGAACC
TGACCGACGACATTGGGGTTCCAAAGATCGGGGGGACCGCGGGG
Found at i:16269793 original size:26 final size:26
Alignment explanation
Indices: 16269757--16269809 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16269747 GTTGGCTTAG
*
16269757 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
*
16269783 GCATACGGAGTTAATTTCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
16269809 G
1 G
16269810 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:16270238 original size:26 final size:26
Alignment explanation
Indices: 16270201--16270252 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16270191 GTTGGCTTAG
*
16270201 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
16270227 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
16270253 AATCATACCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:16270571 original size:455 final size:444
Alignment explanation
Indices: 16269721--16270581 Score: 1161
Period size: 455 Copynumber: 1.9 Consensus size: 444
16269711 AGTGCCCGCT
* *
16269721 TGCCCGCCCACCCGTTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
1 TGCCCGCCCACCCGTTCATTTTGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGCA
* * * * * *
16269786 TACGGAGTTAATTTCCAGTCTAAGATCGAATCGGACCGAGGGTTGCGGTAGCACATGCTAGGCTT
66 TACGGAGTTAATTCCCAATCTAAAATCGAACCGGACCGAGCGTTGCGGTAGCACATGCTAGGCTC
* * ** * * **
16269851 GGACATGTGCTGGCGCCATATTTTTCTTCGTCGGGGTACCATCGTCGGAGAACCTAACCGGTGGC
131 GGACATGTACTGGCGCCACATTTTTCTTCACCGGAGCACCATCGTCGGAGAACCTAACCGACGGC
* * * * * *
16269916 ATTGGGGTTCCGATGATCGGGGGGGTCGGGGGGGTGTGCGCACATGATGTCCGATCGATGCTGTT
196 ATTGGGGTTCCGACGATCGGAGGGGCCGGGGGGGTGCGCGCACATCATGTCCGATCGATGCTGGT
**
16269981 ACTTGGCCCTTATATTGGCCCCCTATCCCCCATCAAACCTCGAGAACTCACACCCTTTTAAAGAA
261 ACTTGGCCCTTATATTGGCCCCCTATCCCCCATCAAACCTCGAGAACTCACACCCCCTTAAAGAA
*
16270046 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAATGGGGACACTTTTTT
326 CATTTGAGATATTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAATGGGGACACTTTTTT
16270111 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTCATCTAATTTTTTTTTGCA
391 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTCATCTAATTTTTTTTTGCA
* * *
16270165 TGCCCGTCCGCCCGTTCATTTTGTCTGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGCA
1 TGCCCGCCCACCCGTTCATTTTGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGCA
* ** *
16270230 TACGGAGTTCATTCCCAATCTAAAATC-ATACCGGATTGAGCGTTGCGGTAGCATATGCTAGGCT
66 TACGGAGTTAATTCCCAATCTAAAATCGA-ACCGGACCGAGCGTTGCGGTAGCACATGCTAGGCT
* *
16270294 C-GAGCATGTACTGGTGCCGCATTTTTCTTCACCGGAGCACCATCGCCGAAGCATCGTTGGAGAA
130 CGGA-CATGTACTGGCGCCACATTTTTCTTCACCGGAGCACCAT---C---G--TC---GGAGAA
* * * *
16270358 CCTGACCGACGGCATTGGGGTTCTGACGATC-GAGGGGCCGAGGGGTGTGCGCGCACATCATGTG
183 CCTAACCGACGGCATTGGGGTTCCGACGATCGGAGGGGCCG-GGGGGGTGCGCGCACATCATGTC
* * * *
16270422 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGGAGAACTCAC
247 CGATCGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCCCATCAAACCTCGAGAACTCAC
* * *
16270487 ACCCCCTTAAAGAGCATTTGAGATATTACAGTTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
312 ACCCCCTTAAAGAACATTTGAGATATTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAAT
*
16270552 GGGGATACTTTTTTCAAATGGTCACAAAAT
377 GGGGACACTTTTTTCAAATGGTCACAAAAT
16270582 TTTTTTGTGC
Statistics
Matches: 357, Mismatches: 46, Indels: 17
0.85 0.11 0.04
Matches are distributed among these distances:
443 3 0.01
444 144 0.40
447 1 0.00
450 1 0.00
452 2 0.01
454 7 0.02
455 199 0.56
ACGTcount: A:0.22, C:0.24, G:0.25, T:0.29
Consensus pattern (444 bp):
TGCCCGCCCACCCGTTCATTTTGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGCA
TACGGAGTTAATTCCCAATCTAAAATCGAACCGGACCGAGCGTTGCGGTAGCACATGCTAGGCTC
GGACATGTACTGGCGCCACATTTTTCTTCACCGGAGCACCATCGTCGGAGAACCTAACCGACGGC
ATTGGGGTTCCGACGATCGGAGGGGCCGGGGGGGTGCGCGCACATCATGTCCGATCGATGCTGGT
ACTTGGCCCTTATATTGGCCCCCTATCCCCCATCAAACCTCGAGAACTCACACCCCCTTAAAGAA
CATTTGAGATATTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAATGGGGACACTTTTTT
CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTCATCTAATTTTTTTTTGCA
Found at i:16272333 original size:12 final size:12
Alignment explanation
Indices: 16272316--16272347 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
16272306 GCCGACGTAG
16272316 TGCCCGCCCGTC
1 TGCCCGCCCGTC
16272328 TGCCCGCCCGTC
1 TGCCCGCCCGTC
16272340 TGCCCGCC
1 TGCCCGCC
16272348 AGTTGGCTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.00, C:0.59, G:0.25, T:0.16
Consensus pattern (12 bp):
TGCCCGCCCGTC
Found at i:16273160 original size:864 final size:863
Alignment explanation
Indices: 16271400--16273398 Score: 2619
Period size: 864 Copynumber: 2.3 Consensus size: 863
16271390 ACATCCTAGT
* * * * * * *
16271400 GATCCAGGGCTTGCGCATCCCGTCTCTCTGGCCGGCGCAGTGCTCGCCCATCCGTCTGCCCGCTC
1 GATCCACGGCTTGCGCATCCCATCTCTCTGGCCGACGTAGTGCCCGCCC-GCC--C-GCCCGCCC
* ** * * * * * *
16271465 GTTTCATCGGTTGGCTTAGGCATATGGAATTCATTCCCAGTCTAATATTAGACTAGATCGAGGGT
62 GTTCCGCCAGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAGGGT
* * * * * *
16271530 TGCGACAGTAGGATCGGCAGCACACGGAGGGGGACCCGG-CTGATCCTCGACTTACGCATCCCGC
127 TGCGGCAGAAGGATCGGCAGCACGCAGAGGGGGA-CCGGACCGATCC-CGACTTACACATCCCGC
* * * * * *
16271594 CCCTCTGGCCGGCTGAGCGCCTGTACTCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTTATT
190 CCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT
* * ** * * *
16271659 CTCTATCTAAGATCGGACCAGACCGAGTGTTACGGCAGCACATGCTGGGCTCGACCATGTGCTGG
255 CCCAATCTAAGATCAAACCAGACCGAGGGTTACGACAGCACATGCTGGGCTCGACCATGTGCTAG
* * * * * *
16271724 TGCCGTAATTTTCTTCGTCGGGGCACCATGGTCGGAGCATCATCGGAGAACCTGACCGGCGGTAT
320 TGCCGCAATTTTCTTCGCCGAGGCACCA--GTC-G-G----ATCGGAGAACCTGACCGACAGCAT
* * *
16271789 TGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGCACT
377 TGGGGTTCCGACAATCGGGAGGGCCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGCACT
* *
16271854 TGGCCCTTATATTGGCCCCCTATCCCTCATGCAACCTTGAGAACTCACCCCCCTTAAAGAGCATT
442 TGGCCCTTATATTGGCCCCCTATCCCTCATGCAACCTTCAAAACTCACCCCCCTTAAAGAGCATT
*
16271919 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTAAAA
507 TGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAATGGGGACACTTTTTTAAAA
* * * *
16271984 TGGTCACAAAATCTTGTACACTTCAATTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAGAATA
572 TGGTCACAAAATCTTGTACACTTCAAGTTTCTAGCTGAATTTTATTGTGCATGCCAACAAAAATA
*
16272049 CAAGGATCATGTCTAACAAGTTTGGGGCCAAAAATCTTTCCGAAAAAATTTTAAAAAATCCCAAA
637 CAAGGATCATGTCTAACAAGTTTGGGGCCAAAAATCTTTCCAAAAAAATTTTAAAAAATCCCAAA
** * * * *
16272114 CCGTAAAAAGTTTTTAAAATCGTTAAAAATAGAAAACGAGTCGTCTTGGCATGAAACTTCACGTC
702 CCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTC
* * ***
16272179 AAGGCTTAAGGGACCATTGTATGAATTTACAAGGCATGAAAATGGCATTGGCATGTAGAAATATG
767 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATG
*
16272244 AAGATGTGCCTAAACCCACCTACCACCATATC
832 AAGATGTGCCTAAACCCACCAACCACCATATC
* * *
16272276 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCTGCCCGCCCGTCT
1 GATCCACGGCTTGCGCATCCCATCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGT-T
* * *
16272341 GCCCGCCAGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCAAGGGTT
65 --CCGCCAGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAGGGTT
* * * * * *
16272406 ACGGTAGCAGGATCAGCAGCACGCAGAGGGGGACCGGACCGATCCACGGCTTGCACATCCCGCCC
128 GCGGCAGAAGGATCGGCAGCACGCAGAGGGGGACCGGACCGATCC-CGACTTACACATCCCGCCC
*
16272471 CTCTGGCCGACTGAGCACCCGCACGCTCGTTTCATGGGTCGACTTAGGCATACGGAGTTCATTCC
192 CTCTGGCCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * * *
16272536 CAATCTAAGATCAAACCAGACTGAGGGTTGCGATAGCACATGCTGGGCTCGAGCATGTTCTAGTG
257 CAATCTAAGATCAAACCAGACCGAGGGTTACGACAGCACATGCTGGGCTCGACCATGTGCTAGTG
* * *
16272601 TCGCATTTTTCTTCGCCGAGGCACCA-TC-G-TCGGAGAACCTGACCGACAGCATTGGGGTTTCG
322 CCGCAATTTTCTTCGCCGAGGCACCAGTCGGATCGGAGAACCTGACCGACAGCATTGGGGTTCCG
* * *
16272663 ACAATCGGGAGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCTCTTAT
387 ACAATCGGGAGGGCCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGCACTTGGCCCTTAT
*
16272728 ATTGGCCCCCTATCCCTCAT-CAA-ATCTCAAAACTCACACCCCCTTAAAGAGCATTTGAGATTT
452 ATTGGCCCCCTATCCCTCATGCAACCT-TCAAAACTCAC-CCCCCTTAAAGAGCATTTGAGATTT
* ** **
16272791 TACAGGTTTGCTGCCAGTTGTTACTAAAGTGTCTGAAATAGGGG-CACTTTTTTCGAATGGTCAC
515 TACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAAT-GGGGACACTTTTTTAAAATGGTCAC
*
16272855 AAAATCTTGTACACTTCGAGTTTCTAGCTGAATTTTATTGTGCATGCCAACAAAAATACAAGGAT
579 AAAATCTTGTACACTTCAAGTTTCTAGCTGAATTTTATTGTGCATGCCAACAAAAATACAAGGAT
* * * ***
16272920 CATGTCTACCATGTTTGGGGCCAAAACTCCTTT-CAAAAAAATTTTAAAAAATCTTGAACCGTAA
644 CATGTCTAACAAGTTTGGGGCCAAAAAT-CTTTCCAAAAAAATTTTAAAAAATCCCAAACCGTAA
*
16272984 AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCT
708 AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTCAAGGCT
**
16273049 TAAGGGACCATTGTATGAATTTATGAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATG
773 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATG
*
16273114 TGCCTAAACCCACCAACCACCCTATC
838 TGCCTAAACCCACCAACCACCATATC
* * * * *
16273140 GATCCTCGGCTTGTGCATCCCATCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCCCGCTCGTTT
1 GATCCACGGCTTGCGCATCCCATCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGTTC
* * * *
16273205 CGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCAAGGGTTGTG
66 CGCCAGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAGGGTTGCG
* * * * * *
16273270 GCAGAAGGATCGGCAGTACGCAGAGGGGGACCCGACCGATCCCTGACTTACCCATCCCACACTTC
131 GCAGAAGGATCGGCAGCACGCAGAGGGGGACCGGACCGATCCC-GACTTACACATCCCGCCCCTC
* * * *
16273335 TGGCCGACTGGGCACCCGCACGCTTGTTTCTTGGGTTGACTTAAGCATACGGAGTTCATTCCCA
195 TGGCCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA
16273399 GCCTAAGCAT
Statistics
Matches: 979, Mismatches: 135, Indels: 33
0.85 0.12 0.03
Matches are distributed among these distances:
860 1 0.00
861 168 0.17
862 1 0.00
863 13 0.01
864 494 0.50
865 8 0.01
869 1 0.00
872 11 0.01
873 1 0.00
874 4 0.00
875 232 0.24
876 45 0.05
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (863 bp):
GATCCACGGCTTGCGCATCCCATCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGTTC
CGCCAGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAGGGTTGCG
GCAGAAGGATCGGCAGCACGCAGAGGGGGACCGGACCGATCCCGACTTACACATCCCGCCCCTCT
GGCCGACTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAAT
CTAAGATCAAACCAGACCGAGGGTTACGACAGCACATGCTGGGCTCGACCATGTGCTAGTGCCGC
AATTTTCTTCGCCGAGGCACCAGTCGGATCGGAGAACCTGACCGACAGCATTGGGGTTCCGACAA
TCGGGAGGGCCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGCACTTGGCCCTTATATTG
GCCCCCTATCCCTCATGCAACCTTCAAAACTCACCCCCCTTAAAGAGCATTTGAGATTTTACAGG
TTTGCTGCCAGTAGCCACTAAAGTGTCTGAAATGGGGACACTTTTTTAAAATGGTCACAAAATCT
TGTACACTTCAAGTTTCTAGCTGAATTTTATTGTGCATGCCAACAAAAATACAAGGATCATGTCT
AACAAGTTTGGGGCCAAAAATCTTTCCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTC
AAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTCAAGGCTTAAGGGAC
CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAA
CCCACCAACCACCATATC
Found at i:16273414 original size:26 final size:26
Alignment explanation
Indices: 16273376--16273431 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
16273366 TGGGTTGACT
16273376 TAAGCATACGGAGTTCATTCCCAGCC
1 TAAGCATACGGAGTTCATTCCCAGCC
* * *
16273402 TAAGCATATGGAGTTCATTCTCAGTC
1 TAAGCATACGGAGTTCATTCCCAGCC
16273428 TAAG
1 TAAG
16273432 ATCAAACTGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGCC
Found at i:16274045 original size:26 final size:26
Alignment explanation
Indices: 16274008--16274060 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16273998 GTTGACTTAG
* *
16274008 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
16274034 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16274060 G
1 G
16274061 ATCGGGCCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16274090 original size:629 final size:629
Alignment explanation
Indices: 16272882--16274097 Score: 1733
Period size: 629 Copynumber: 1.9 Consensus size: 629
16272872 GAGTTTCTAG
* *
16272882 CTGAATTTTATTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCATGTTTGGGGCCAAAAC
1 CTGAATTTTATTGTGCATGCCAACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAAC
*
16272947 TCCTTTCAAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAA
66 TCCTTTCAAAAAAAGTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAA
* * **
16273012 AACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTATGAGC
131 AACGAGCCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATCAATTTACAAGC
*
16273077 CATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGA
196 CATAAAAATGGCATTGGAACACAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGA
** * * * *
16273142 TCCTCGGCTTGTGCATCCCATCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCG
261 TCCTCGGCTTACGCATCCCATCTCTCAGGCCGACGTAGTGCCCGCCCGCCCGCCCACTCGTTTCA
* * * * **
16273207 TCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCAAGGGTTGTGGC
326 TCGGTTGCCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGATCAAGGGTTACGGC
* * * * *
16273272 AGAAGGATCGGCAGTACGCAGAGGGGGACCCGACCGATCCCTGACTTACCCATCCCACACTTCTG
391 AGAAGGATCGGCAGCACGCAAAGGGGGACCCGACCAATCCCCGACTTACCCATCCCACACCTCTG
* * *
16273337 GCCGACTGGGCACCCGCACGCTTGTTTCTTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGCC
456 GCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGCC
* * ** **
16273402 TAAGCATATGGAGTTCATTCTCAGTCTAAGATCAAACTGGACCAAGGGTTATGGCAGCACATGCT
521 TAAGCATACGAAGTTCATTCTCAGTCTAAGATCAAACCAGACCAAGGGTTACAGCAGCACATGCT
16273467 GGAATCGGGTATGTGTCAGTGCCGCATTTTTCCTCGTCGGGGCA
586 GGAATCGGGTATGTGTCAGTGCCGCATTTTTCCTCGTCGGGGCA
*
16273511 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAAC
1 CTGAATTTTATTGTGCATGCCAACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAAC
* *
16273576 T-CTTTCTGAAAAAAGTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGA
66 TCCTTTC-AAAAAAAGTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGA
* *
16273640 AAATGAGCCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATCAATTTACAAG
130 AAACGAGCCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATCAATTTACAAG
** * *
16273705 CCATAAAAATGGCATTGGAATGCAGAAATATGAAGATGTGCCTAGACCCACCTACCACCCTATCG
195 CCATAAAAATGGCATTGGAACACAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCG
* *
16273770 ATCCAT-GGCTTACGCATCCCGTCTCTCAGGCCGACGTAGTGCCCGCCCGCCCGCCCACTTGTTT
260 ATCC-TCGGCTTACGCATCCCATCTCTCAGGCCGACGTAGTGCCCGCCCGCCCGCCCACTCGTTT
* *
16273834 CATTGGTTGCCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGA-CTGAGGGTTAC
324 CATCGGTTGCCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGATC-AAGGGTTAC
* * * * * * * ** *
16273898 GGTAGCATGATTGGCAGCACGCAAAGGGGGACCC-AGCCAATCCCCGGCTTGCTCATCCTGCCCC
388 GGCAGAAGGATCGGCAGCACGCAAAGGGGGACCCGA-CCAATCCCCGACTTACCCATCCCACACC
* * * *
16273962 TCTGGTCTG-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCTTTCC
452 TCTGG-CCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAAGCATACGGAGTTCATTCC
* *** * *
16274026 CAGTCTAAGCATACGAAGTTCATTC-CTAGTCTAAGATCGGGCCAGACCGAGGGTTGCAGCAGCA
516 CAGCCTAAGCATACGAAGTTCATTCTC-AGTCTAAGATCAAACCAGACCAAGGGTTACAGCAGCA
16274090 CATGCTGG
580 CATGCTGG
16274098 GCTCAGGCAT
Statistics
Matches: 514, Mismatches: 67, Indels: 12
0.87 0.11 0.02
Matches are distributed among these distances:
628 8 0.02
629 503 0.98
630 3 0.01
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.25
Consensus pattern (629 bp):
CTGAATTTTATTGTGCATGCCAACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAAC
TCCTTTCAAAAAAAGTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAA
AACGAGCCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATCAATTTACAAGC
CATAAAAATGGCATTGGAACACAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGA
TCCTCGGCTTACGCATCCCATCTCTCAGGCCGACGTAGTGCCCGCCCGCCCGCCCACTCGTTTCA
TCGGTTGCCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGATCAAGGGTTACGGC
AGAAGGATCGGCAGCACGCAAAGGGGGACCCGACCAATCCCCGACTTACCCATCCCACACCTCTG
GCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGCC
TAAGCATACGAAGTTCATTCTCAGTCTAAGATCAAACCAGACCAAGGGTTACAGCAGCACATGCT
GGAATCGGGTATGTGTCAGTGCCGCATTTTTCCTCGTCGGGGCA
Found at i:16278474 original size:26 final size:26
Alignment explanation
Indices: 16278437--16278489 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16278427 GTTGACTTAG
16278437 GCATACCGAGTTCAATCCCAGTCTAA
1 GCATACCGAGTTCAATCCCAGTCTAA
* *
16278463 GCATA-CGTAGTTCATTCCTAGTCTAA
1 GCATACCG-AGTTCAATCCCAGTCTAA
16278489 G
1 G
16278490 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACCGAGTTCAATCCCAGTCTAA
Found at i:16279458 original size:11 final size:11
Alignment explanation
Indices: 16279438--16279470 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
16279428 ACTGGGGCAC
16279438 CATCGCCGGAG
1 CATCGCCGGAG
*
16279449 CATCGTCGGAG
1 CATCGCCGGAG
16279460 CATCGCCGGAG
1 CATCGCCGGAG
16279471 AACCCGGCCG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.18, C:0.33, G:0.36, T:0.12
Consensus pattern (11 bp):
CATCGCCGGAG
Found at i:16279846 original size:26 final size:26
Alignment explanation
Indices: 16279791--16279847 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
16279781 CTCCTTCGAA
**
16279791 AAAAAGTTTAAAAAATCTCGAACCAC
1 AAAAAGTTTAAAAAATCTCGAAAAAC
* *
16279817 AAAAAGTTTCAAAAATCAT-GAAAAAT
1 AAAAAGTTTAAAAAATC-TCGAAAAAC
16279843 AAAAA
1 AAAAA
16279848 ATGAGTCGTC
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.61, C:0.12, G:0.07, T:0.19
Consensus pattern (26 bp):
AAAAAGTTTAAAAAATCTCGAAAAAC
Found at i:16280238 original size:25 final size:25
Alignment explanation
Indices: 16280204--16280259 Score: 96
Period size: 25 Copynumber: 2.3 Consensus size: 25
16280194 TGACATAGGC
*
16280204 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
16280229 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
16280254 AT-CAGA
1 ATACAGA
16280260 CCGGACCGAT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
24 4 0.13
25 26 0.87
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.27
Consensus pattern (25 bp):
ATACAGAGTTCATTCCCAGTCTAAG
Found at i:16280639 original size:886 final size:885
Alignment explanation
Indices: 16279331--16293403 Score: 9764
Period size: 886 Copynumber: 15.5 Consensus size: 885
16279321 GTTGACTTAG
* *
16279331 GCATACGGAGTTCAGTCCCAGTCCAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
16279396 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACTGGGGCACCATCGCCGGAGCATCGTCGGAGC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGG---CA----C----CATCGTCGGAGC
* * * * ** *
16279461 ATCGCCGGAGAACCCGGCCGGTGGCATTGGGGTT-TCGACGATCGGGGGGCCGGGGGGTGTGCAC
120 ATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCT-GGCGATCGGGGGGGTGGGGGGTGTGCGC
*
16279525 ACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTT
184 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTT
* *
16279590 GAGAAGTCACACCCCCCTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
249 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
*
16279655 TGTCTGAAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
314 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * * **
16279720 AATTATTTTGTGCATGCCAACAAAAACACAAGGATCACCTCTACCGGGTTTGGGGCCAAAACTCC
379 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
* * * * *
16279785 TTCGAAAAAAAGTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAAAAAAT
444 TTCG-AAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
* * **
16279850 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTCAGGGACCACTGTATGAATTTACAAGAAAT
508 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
*
16279915 GAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
573 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* *
16279980 ACGGGTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTCCGTTCGTTTCGTCG
638 ACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG-CCGCTCGTTTCGTCG
16280045 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCA-G-CA
702 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGGACA
*** * * *
16280108 GCACGCAGAGGGGGACGTGATCGATCTTTGGCTTGGGCATCCTGCCCCTATGGCCGGCTGAGCAC
767 GCACGCAGAGGGGGAC-TGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGC
*
16280173 CCGCACGCTCGTTTCGTGGGTTGACATAGGCATACGGAGTTCATTCCCAGTCTAA
831 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
16280228 G-ATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGATGGTTACGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * *
16280292 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGCCGCGTTACCTTCGTCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
*
16280357 ACCTGACCGGTGGCATTGGGGTTCTGGCGATCGGGGGGGTGGAGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCTGGCGATCGGGGGGGTGG-GGGGTGTGCGCACATGATGTGC
16280422 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
* *
16280487 CCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
16280552 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* **
16280617 CCATGCCAA-AAAGAATACAAGGATCACGTCTACCAAGTTTGATGCCAAAACTCCTTTCGAAAAA
390 GCATGCCAACAAA-AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCGAAAAA
** *
16280681 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTCGTCTT
453 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
16280746 GCCATGAAACTTCACGTAAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** * * *
16280811 TTGGCACACAGAAATATGAAGATGTGCATAAACCCACCTACCACCCCATCGATCCACGGCTTGTG
583 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * *
16280876 CATCCTGTCTCTCTGGTCGGCGTAGTGTCCGCCAGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAG
648 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG-CCGCTCGTTTCGTCGGTTGGCTTAG
* * *
16280941 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACGGAGGGTTGC-GG-CAGCACGCAGAG
712 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGGACAGCACGCAGAG
* * ** * *
16281004 GGTGACCCGGCCGATCCCCTGCTTGCGCAT-CTCGCCCCTCTGGCCGACTGAGCGCCCGCACGCT
777 GGGGA-CTGATCGATCCCCGGCTTGCGCATCCT-GCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
* **
16281068 CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTTGTCTAA
840 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
16281114 GCATACGGAGTTCATTCCCAGTCCAAGATCGGACCGGACCGGGGGTGGCGGCAGCACATACTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
** * *
16281179 CTCGATCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * *
16281244 ACCCGACCGACAGCATTGGCGTTCTGGCGATCGGGGGGGTCGGGGGTGTGCGCACATGATGTGCG
131 ACCTGACCGGCGGCATTGGGGTTCTGGCGATCGGGGGGGTGGGGGGTGTGCGCACATGATGTGCG
* * *
16281309 ATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACTTTGAGAACCCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
* * * *
16281374 CCCCTTAAGGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGGCATTAAAGTGTTTGAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * * * *
16281439 AGACACTTTTTTCAAATAGTCACAAAATATTGTACACTTCGACTTTTTAACTGAATTTTTTTGTG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* *
16281504 CATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
391 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAAAAT
* * *
16281569 TTTAAAAAATCCCGAACTGCAAAAAGATTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
455 TTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
16281634 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
520 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * * *
16281699 GGCACGTAGAAATATGAAGATGTGCCTAAACCCACTTACCACCCTATTGATCCACGGCTTACGCA
585 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * * *
16281764 TCCCGTCTCTCCGGCCGGCATAGTGCCCGCCTGTCCGCCCGCTCGTTTCATCGGTTGGCTTAGGC
650 TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG-CCGCTCGTTTCGTCGGTTGGCTTAGGC
* * *
16281829 ATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGCAGCAGGATCGGTAGC
714 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT------GCAGGA-C---AGC
* * * * * * * *
16281894 ACACAGAGGGGGGCCCGGTTGATCCCCGGCTTGCACATCCTGCCCCTCTGGCCGACTAAGCGCCC
769 ACGCAGA-GGGGGACTGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCC
* *
16281959 GCACGCTTGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
833 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
16282012 GCATGCGGAGTTCATTCCCAGTCTAAGATCGGATCGAACTGAGGGTTAG-GGCAGCGCATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT-GCGGCAGCACATGCTGG
* * **** * *
16282076 GCTCGGGCATGAGCTGGTGCTGCATTTTTCTTCTAATGGGCACCATCGCCGGAGCATCGTCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAG
* ** * ** *
16282141 AGCCTGACTAGCGGCATTGGGGTTCCGGCGATTAAGGGGGCTGGGGGG-GTTGCGCACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCTGGCGA-TCGGGGGGGTGGGGGGTG-TGCGCACATGATGT
* * *
16282205 GCGATGGTTGCTGGTAATTGGCTCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
* * * *
16282270 CACCCCTTTAAAGAGCATTTCAGATTTTACAGGTTTGCTACTAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
16282335 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGCACACTTTCGAGTTTTTAACTGAATTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TTCGAGTTTTTAGCTGAATTTTTT
* *
16282400 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTCCGAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAA
* *
16282465 AAATTTTAAAAAATC-CTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCAT
451 AAATTTTAAAAAATCTC-GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
16282529 CTTGCCATGAAACTTCACGTGATGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATAAAAATG
515 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
16282594 GCATTGGCATGTAGAAATATGAATATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
580 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
16282659 GCGCATCTCGTCTCTTTGGCCCG-CGTAGTGCCCGCCGCCCGCCCTCCCGCTCGTTTCATTGGTT
645 GCGCATCCCGTCTCTCTGG-CCGACGTAGTG--C-CCGCCCGCCC-GCCGCTCGTTTCGTCGGTT
* *
16282723 GGCTTAGGCAAATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGCTAGCAGG
705 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGG-T----T-GCA-G
* * * * * * *
16282788 ATTGACAGCACACAGAGGGGGACTCAGTCGATCCCCGCCTTACACATGCC-GCCCCTTTGACCGG
763 ---GACAGCACGCAGAGGGGGACTGA-TCGATCCCCGGCTTGCGCAT-CCTGCCCCTCTGGCCGG
* * *
16282852 CTAAGGGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
823 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
16282915 GCATATGGAGTTCATTCCCAGTCTAAGGTCAGATCAGATCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *** ** * * *
16282980 CTTGGGCATGTGCTGGAGCCGCATTTTTCTTCGATAGTCCACCATCGTCGAAGCATCGTCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * *
16283045 ACCTGACCGGCGACATTGGGGTTCCGGCGATCGGGGGGGTCGGGGGGAGTGTGCACACATGATGT
131 ACCTGACCGGCGGCATTGGGGTTCTGGCGATCGGGGGGGT--GGGGG-GTGTGCGCACATGATGT
* * * *
16283110 GCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATGCCTCATCAAACCTCGAGAAGTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
*
16283175 CACCCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * * *
16283240 TGGGGACACTTTTTTCAATTGGTCACAAAATCTTGTACACTTCGACTTTTTGGCTAAATTTTATT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
16283305 GTGCATGCCAACAAAAATACAAGGATCACATCTACCATGTTTGGGGCCAAAACTCCTTTTGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCGAAAA
* *
16283370 AATTTAAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
452 AATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
**
16283435 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGAAATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
16283500 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC-CCTACCACCCTGTCGATCCACAGCTTGT
582 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
*
16283564 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCGCCCACTCGTTTCGTCGGTTGG
647 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCG----CCCGCCCG-CCGCTCGTTTCGTCGGTTGG
* * * * *
16283629 CTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTAGACCGGACTGAGGGTGGCGGCAGCAGGAT
707 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGT------TGCAGGA-
* * * * *
16283694 CGACCACACGCAGAGGAGGACTCGATCGATCCCCTGCTTGCGCAT-CTCGCCTCTCTAGCCGGCT
765 C-A--GCACGCAGAGGGGGACT-GATCGATCCCCGGCTTGCGCATCCT-GCCCCTCTGGCCGGCT
* * * *
16283758 GAGTGCCCGTCCGCACACTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
825 GA--G--CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
16283823 GCAGACGAAGTTCATTCCCAGTCCAAGATCGGACTGGACCGAGGGTTACGGCAGCAGATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * ** *
16283888 CTCGAGAATGTGCTGGTGCCACATTTTTCTTTGCAGGGGCACCATCGTCGGAGCATCATCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* *
16283953 ACCTGACTGGCGGCATTGGGGTTCTGACGATC-GGGGGGTCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCTGGCGATCGGGGGGGT-GGGGGGTGTGCGCACATGATGTGC
* * * *
16284017 GGTGGGTGCTAGTACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
*
16284082 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAACCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
16284147 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGTTGAATTATTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
16284212 GCATGCCAACAAAAATACAAGGATCACGTCTGCCAAGTTTGGGACTAAAACTCCTTCCAAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAAAA
*
16284277 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
454 TTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
*
16284342 CCATGAAAATTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
16284407 TGGCATGAAGAGATATGAAAATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
584 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
** * * **
16284472 ATCCCGTCTCTCTGGCCGACGTAACGCCCGCCCG--C-CCACTCGTTTCATCAATTGGCTTAGGC
649 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGC
* *
16284534 ATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTAACAGTAGGATCGACAGC
714 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG---C---A-G---GACAGC
* *
16284599 ACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCAT-CTCGCCCCTCTGGCCGGCTGAGCGCC
769 ACGCAGAGGGGGA-CTGATCGATCCCCGGCTTGCGCATCCT-GCCCCTCTGGCCGGCTGAGCGCC
*
16284663 TGCACGCTCGTTTCGT-GG--G---T-----TA---A---C-TT---AG-----
832 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
16284691 GCATACGGAGTTCATTCCCAGTCGAAGATCGGACCGGACCGAGGGCTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
16284756 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCATCAGAGCATCGCAGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * * * ** *
16284821 ACCTAATCGGTGGAATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTTGTGCAAACATAATGTG
131 ACCTGACCGGCGGCATTGGGGTTCTGGCGATCGGGGGGG-TGGGGGG-TGTGCGCACATGATGTG
* * *
16284886 TGATGGGTGCTGGTTCTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTTGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
* * * *
16284951 ACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATCAAAGTGTCTTAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
16285016 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTCCAGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
16285081 GGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTTCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCGAAAAA
* *
16285146 A-TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
453 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
16285210 GCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * * *
16285275 TTGGCATTCAGAAATATGAAGATGTGCGTAAACTCACTTACCACCATATCTATCCACGGCTTGCG
583 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
16285340 CATCCCGTCTCTCTGGCCGGCGTGGAGCCCGTCCACCCGCCCGCCTGCTCGTTTCATCGGTTGGC
648 CATCCCGTCTCTCTGGCCGACGTAGTGCCCG----CCCGCCCGCC-GCTCGTTTCGTCGGTTGGC
* * * * ** *
16285405 TGAGGCATACGAAGTTCATTCCTAGTCTAAGATCGGACTGGATCGAGGGTTGCGGTAGCAGGATC
708 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGG-T----T-GCA-G---
* ** * *
16285470 GACAGCACGTAGAGGGGGACCCAGTCGATCCCCAGCTTGAGCAT-CTCGCCCCTCTGGCCGGCTG
763 GACAGCACGCAGAGGGGGACTGA-TCGATCCCCGGCTTGCGCATCCT-GCCCCTCTGGCCGGCTG
*
16285534 AGCACCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG----TT--CA-T-T--
826 AGCGCCC-GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
16285585 GC---C--AG-TC--T--AAG-C----AT---A-CGGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * *
16285631 CTTGCGCATGTGCTGGTGTCACATTTTTCTTCAG--GGGGCACCATCGTCGGAGCATCACAGAAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-GCCGGGGCACCATCGTCGGAGCATCGCCGGAG
* * ** *
16285694 AACCTGACCGACGGCATTGAGGTT-TCGATGATC-GGGGGGTCGGGGCGGGTGTGCACACATGAT
130 AACCTGACCGGCGGCATTGGGGTTCT-GGCGATCGGGGGGGT--GGG-GGGTGTGCGCACATGAT
* ** * **** * * * *
16285757 GTGTGATGCATGCTGGTACTTGGCCGC--ATA-CGGAGTTC-ATTCCC-AATCTAAGCAT-ACGG
191 GTGCGATGGGTGCTGGTACTTGGCC-CTTATATTGGCCCCCTA-TCCCTCATCAAACCTTGA--G
** ** * *** *** * * * *
16285816 AGA-TCATTCCCAGTCT-AAGATCAGACCG-GA-CCGA-GGGTTGCGGCAGCACATGGTGGGCTC
252 A-ACTCACACCCCCT-TAAAGAGCA-TTTGAGATTTTACAGGTT--TGCTGC-CA--GT-AGC-C
*** * * ** * * * * ** *
16285876 AGGCATGTG-CTG--GTGCCG-CATTTTTCTTCACCGA-GG-CAC-CATTGCCAG-AGCATCGTC
307 ATTAAAGTGTCTGAAATGGGGACACTTTT-TTCA--AATGGTCACAAAAT-CTTGTA-CA-CTTC
*** * *** ** ******* * *
16285933 GGAGAACCTGACCGAC-GACATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGTGCACATG
366 -GAG-TTTTTA--G-CTGA-ATT-TTTTTGTG-C-AT-------GCCA--ACAAAAATACA-AGG
* ** * * *** * ** ** ** **
16285997 ATGTGCATGGGTGCTGGTACCTGGCCCTTATATTGGCCCCCTA-TCCCTC-ATCAAACCTCGAGT
412 A--T-CA--CGT-C---TACCAAG----T-T-TGGGGCCAAAACTCCTTCGAAAAAATTTTAAAA
* * * * * * * * ** * *
16286060 ACTCAC-ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CCAGTAGCCATTAA--AG
462 AATCTCGAACCGC--AAAAAG--TTTCA-A----A-A--ATCG-TGAAAAATAG--A-AAACGAG
* *** * * * * *
16286121 T-GTCTTG--ATGGGGACACTT-TTTTCAAATGG-TCACA---A-AATCT-TAT-ACACTT-CGA
511 TCGTCTTGCCAT---GAAACTTCACGT-GAA-GGCTTA-AGGGACCAT-TGTATGA-ATTTACAA
*** ** **** * * * ** **
16286174 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAGTACGAGGAT-CACATCTACCAAGTTTGG
568 G-CCATA--AAAATGGCATTG-GCATG-C-A-GAAA-TATGAAGATGTGC--CTA--AA----CC
** * * *** **** **** * * *** *
16286238 GGCC-AACACACCT-TCCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCAT
617 CACCTACCAC-CCTATCGATCCACGGCTT-GCGCAT--C---CCGT-----CTCTC---TGGC-C
** **** ** ** * *** * ** * *
16286301 GAAAAATAGAAAACGAGTCGTCTTGCC-AT-GAAACCTCACGTGACGGCTTAAGGGACCAT-TGT
666 G--ACGTAGTGCCCG-CCCG-CCCGCCGCTCGTTTCGT--CG-GTTGGCTT-A-GG--CATACGG
** * * * * * ** * * ** * *
16286363 A-TGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGC-CTAAATCGA
720 AGTTCA-TTCCCAGTC-T-AAGAT--CA---G-AC-C--AGA-CCGAGGGT-TGCAGGACAGC-A
* ***** * * * * ** * *
16286426 C-C-TA-CCACCCT-ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAACGTAGTGCCCGT
770 CGCAGAGGGGGACTGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGC-T-GAG--CGC
* * * * *
16286487 CCGCCCGCTCATTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
831 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * * * * * *** *
16286542 G-ATTGAAC-TAGATTGAGGTTTGCGGTAGTAGGATCGG-CAGCACGCAGAAGGGGACCTGGCTG
1 GCA-T--ACGGAG-TTCA--TTCCCAGT-CTAAGATCGGACCGGAC-C-G-AGGGTTGC-GGCAG
* ** ** * * * *
16286604 -ATCCTCGACTTTCGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTCAT-G--G
55 CA-CAT-G-C-TGGGC-T--CG-GGC-AT-GT--GCTG-GTG-CCGCA---T-TTTTCTTCGCCG
* * * * *** * * * *** *
16286665 GTTG-ACTTAGGCATACGGAGTTCATTC-CCAGTCTAAGCAT-A-CGGAGTTCATTCCCAG-ACT
102 G-GGCAC-CA-TCGT-CGGAG--CA-TCGCC-GGAGAA-CCTGACCGGCG-GCATT-GGGGTTCT
** ** *** * * * * * *
16286725 -AAGATCGGACCGGACCGAGGGT-TACGACAGCACATGCTG-G-GCTCGG-GCAT-GTGCTGGTG
156 GGCGATCGG-GGGGGTGGGGGGTGT--G-C-GCACATGATGTGCGATGGGTGC-TGGTACTTG-G
* * * *** * * * * * ** *
16286784 CCACATTTTTCTTCGTCGGGGC-A-CCATCATCGGAGCATTGCCAGAGAACCTGACCGACGGCAT
214 CC-C--TTATATT-GGC-CCCCTATCCCTCATC-AAACCTT----GAGAA-CTCA-C-ACCCCCT
*** * ***** * * * ****
16286847 TGGGGTTCCGGCGA-TTGAG-GGGGCCGAGGGGGTGTGC-GCACATGATGTGCGATGGGTGCTGG
266 TAAAG----AGC-ATTTGAGATTTTAC-A---GGTTTGCTGC-CA-G-T-AGCCATTAAAG-T-G
* * ** * *** **** ** *
16286909 TACTTAGCCCTTATATTGGCCCCCTATCCCTCATTAATCCTTGAGAACTCACACCCCCTTAAAGA
316 T-C-T-G-----AAATGGGGACACT-TTTTTCA--AA----TG-G---TCACAAAATCTTGTACA
* * ** ** * ** * *
16286974 GCATTTGAGATTTTA-C--AGGTTTGCTG-CCAGTAGCC-ATTAAAGTGTCTGGAATGGGGA-CA
362 -C-TTCGAGTTTTTAGCTGAATTTTTTTGTGCA-T-GCCAACAAAAAT-AC---AA---GGATCA
* * ** * * * * * * * * ** * * * * ***
16287033 CTTTTTTCAA--AT-GGTCAAAAAAT-CTT-G--TACACTTT--GAGTTTTTG-GCTG--AATTT
416 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAG
***** ** * * *
16287086 TTTTGTGCAT-GCCAAAAA-A-AATACAAGGATCACGTCTT-CCAAGTTTGGGGCCAAAACTCCT
481 TTTCAAAAATCGTGAAAAATAGAAAACGA-G-T--CGTCTTGCC-A---T---G---AAACTTC-
* *** *** ** ** * ** *
16287147 TC-TGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
531 ACGTG---AAGGCTTAAGGGA--CC--ATTGTATGAA-TTT-ACAAGCCAT-AAAAAT-G---GC
* * * * * ** *** ** * *
16287211 GAGTCGCCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC-A
582 -A-TTGGCATG-CA-GAAA--T-A--TGAA-G---ATGTG-CC--TAAACCCACCTACCACCCTA
*** * * * *** * ** ** * ** *
16287275 T--AAAAATGGCATTG-GTA-CACAG-AAATAT-GAAGA--T-GTGCCTAAACCCACCTACCAC-
631 TCGATCCACGGC-TTGCGCATC-CCGTCTCTCTGGCCGACGTAGTGCC--CGCCCGCCCGCCGCT
* * * * * * * ******
16287330 CCTATCGATCCACGGCTTGCGCATCCT-GTC-TCTCTG-GTCGGCATAGTGCCC-GCCCGCCCGC
692 CGTTTCG-T---CGG-TTG-GC-T--TAGGCAT-ACGGAGT--TCAT--T-CCCAGTCTAAGATC
** * * * ***** * *
16287391 CCACCCG-CTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTTTAAGATTGGACC
742 AGACCAGAC-CG----A-GGGTT-GC--AGG---AC--AG--CA--CGCAGAGGGGGACT-GATC
** * * * * ** ** * *
16287455 GGA-CCAAGGGTTGCGGCAGCAGGATCGATAGCACATAGAGGGGGACCCGATTGATC-CTCGGCT
788 -GATCCCCGGCTT---GC-GC---ATC-CT-GCCCCT----CTGG--CCGGCTGAGCGC-CCGC-
* ** * * * * * * **
16287518 TATGCATCCCGCCCCTC-TGGCCGGTTGAGCGCTCGCACGTTCGTTTCGTGGGTTGACTTAGGCA
835 -ACGC-T--CG--TTTCGT-G--GGTTGA---CT--TA-G-GC-ATACG-GAGTTCA-TT-CCCA
* *
16287582 -TACGGAG
880 GT-C-TAA
** * *
16287589 TTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAAGGTTGC
1 ----------------GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGC
* * * * *
16287654 GGCATCACATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACAATCGTC
50 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTC
* * * * * *
16287719 AGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGAATGGGGGGTG
115 GGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCTGGCGATCGGGGGG-GTGGGGGGTG
* * *
16287784 TCCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTAATATTGGCCCCCTATCCCTCATCAA
179 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
*
16287849 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
244 ACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* * *
16287914 TAAAGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCGCAAAATCTTGTACACTTCGAGCTTTT
309 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* * *
16287979 AGCTGAATTTTTTTGTGCAAGCCTACAAAAATACAAGGATCACGTCTACCAAGTTCGGGGCCAAA
374 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* * * * * **
16288044 ATTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAATTTTGAAAATCGTGAAAAATAG
439 ACTCCTT-CGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAG
*
16288109 AAAACGAGTCGGCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
503 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* * * * **
16288174 GCCATAAAAATGGCATTGGAATGTAGAAATATGAAGATGTACGTAAACCCACCTACCACAATATC
568 GCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * *
16288239 GATACACGGCTTGCGCATCCAGTCTCTCTGGCCGGA-GTAGTGCCCGCCCGCCCGCCCACTTC-T
633 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-GACGTAGTGCCCGCCCGCCCG-CCGC-TCGT
** * * *
16288302 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCGTAGTCTAAGATCGGATCGGACCAAGAGTTT
695 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACC--GAG---
** * * * * *
16288367 GCTGCAGCAGGATTGGTAGCACGCAGAGGGGGACCCGA-CTGATCCCCGGCTTGTGCAACCCGCC
755 G--GTTGCAGGA----CAGCACGCAGAGGGGGA-CTGATC-GATCCCCGGCTTGCGCATCCTGCC
* * * * * *
16288431 CCTCTTGCCAGTTGAGCACCCGCACACTCG--TC------T-A---A-G-AT-CGGAGTTAATTC
812 CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
*
16288481 CCAATCTAA
877 CCAGTCTAA
* * ** *
16288490 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGAATTGAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
** * * * * ** *
16288555 CTCAAGCATATTCTGATGCCGCATTTTTCTTCGTC-GGGCACCATCACCGGAGCA-CTGCCAGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATC-GCCGGAG
* * * *
16288618 AACCTGACCGGCGGCATTGCGGTTCCGACGATCGGGGGCACCG-GGGGGGTGTGCGCACATGATG
130 AACCTGACCGGCGGCATTGGGGTTCTGGCGATCGGGGG---GGTGGGGGGTGTGCGCACATGATG
* *** * * *
16288682 TCCGATGGGCATTGGTACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTCGAGAAGTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
* * *
16288747 ACACCTCTTTAAAGAGCTTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
16288812 ATGGGGACACTTTTTTCAAATGGTCGCAAAATCTTGTACACTTGGAGTTTTTAGCTGAATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
16288877 TGTACATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACGCTTTCCGAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAA
* * * * * * *
16288942 AAATTTGAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGGGTTGTC
451 AAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
16289007 TTGCCATGAAACCTT-ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
516 TTGCCATGAAA-CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
16289071 GCATTGGCATGCGGAAATATGAAGATGTGCCTAAACCCACCTAGCACACTATCGATCCACGGCTT
580 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
16289136 GTGCATTCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG--C-CCGCTCGTTTCATCGGTTGGCTT
645 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCGCTCGTTTCGTCGGTTGGCTT
** * * *
16289198 AGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATC-GAACTGAGGGTTGCAGTAGCAGTATCG
710 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCAGGA-CAG---C-
* * ** * *
16289262 ACAGTATGCAGAGGGGGACCCCGCT-GATCATCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGA
769 AC-----GCAGAGGGGGA--CTGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGA
* * * *
16289326 GTGCCCGTACGCTCGGTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
827 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
16289385 GCATACTGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGTTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * **
16289450 CTCTGGCATGTGCTGGTGCCGCATTTTCCTTCGTCGGGGCACCATCGCCGGAGCATCATCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * * **
16289515 ACCTGACCGACGGCATTTGGGTTCCGACGATTGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
131 ACCTGACCGGCGGCATTGGGGTTCTGGCGATCGGGGGGGTGGGGGGTGTGCGCACATGATGTGCG
* * * *
16289580 ATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATTAATCCTTGAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
* * *
16289645 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTACCCATTAAAATGTCTGGAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
16289710 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTGTG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * *
16289775 CATGCCAAAAAAAATACAAGGATCACGTTTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAAG
391 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAAAAT
* * * *
16289840 TTTAAAAAATC-CTAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGGCTTG
455 TTTAAAAAATCTC-GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* *
16289904 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTACAAGCCATAAAAACGGCAT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * *
16289969 TGGCATGCACAAATATGAAGATGTGCC-ATACCTACCTACCACCCTATCGATCCAAGGCTTACGC
584 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * *
16290033 ATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCT
649 ATCCCGTCTCTCTGGCCGACGTAGTG--C-CC-GCCCGCCCG-CCGCTCGTTTCGTCGGTTGGCT
* ** * *
16290098 TAGCCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCAAGGGTTGCAGCAACAGGATCG
709 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT---G---CAGGA---
* * * * * * **
16290163 GCAGCACACAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTTTTACCGGCTGAG
765 -CAGCACGCAGAGGGGGA-CTGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAG
* * * * * *
16290228 CGCCCGCACACTCGTTTCATTGGTTCACTTAGGCATACAGAGTTCATTCTCAGTCTAA
828 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
16290286 GCATATGGACTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTGCGGCAGCATATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
** * * * *
16290351 CTCGGGCATGTGCTGGTATCGCATTTTTCTTCGTCGAGGCACCATCGTCAGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * **
16290416 ACCTGACCGACGGCATTGGGGTTCCGGTGAT-TGGGGGGCCGGGGGTGTGCGCACATGATGTGCG
131 ACCTGACCGGCGGCATTGGGGTTCTGGCGATCGGGGGGGTGGGGGGTGTGCGCACATGATGTGCG
* *
16290480 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATTAATCCTTGAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
* * *
16290545 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTACCCATTAAAATGTCTGGAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
16290610 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTATTTTGTG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * *
16290675 CATGCGAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAAT
391 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-GAAAAAAT
* * * *
16290740 TTTAAAAAATCTTGAACCGTAAAAAGTTAT-GAAAATCGTGAAAAATAAAAAACGAGTCGTCTTG
455 TTTAAAAAATCTCGAACCGCAAAAAGTT-TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* *
16290804 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTACAAGCCATAAAAACGGCAT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * *
16290869 TGGCATGCACAAATATGAAGATGTGCC-ATACCTACCTACCACCCTATCGATCCAAGGCTTACGC
584 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * *
16290933 ATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCT
649 ATCCCGTCTCTCTGGCCGACGTAGTG--C-CC-GCCCGCCCG-CCGCTCGTTTCGTCGGTTGGCT
* ** * *
16290998 TAGCCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCAAGGGTTGCAGCAACAGGATCG
709 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT---G---CAGGA---
* * * * * * **
16291063 GCAGCACACAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTTTTACCGGCTGAG
765 -CAGCACGCAGAGGGGGA-CTGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAG
* * * * * *
16291128 CGCCCGCACACTCGTTTCATTGGTTCACTTAGGCATACAGAGTTCATTCTCAGTCTAA
828 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * *
16291186 GCATATGGACTTCATTCCCAGTCTAAGATTGGATCAGATCGAGGGTTGCGGTAGCATATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
** * * *
16291251 CTCGGGCATGTGCTGGTATCGCATTTTTCTTCGCCGAGGCACCATCGTCAGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * * *
16291316 ACCTGACTGACGGCATTGGGGTTCCGGTGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCTGGCGATCGGGGGGG-TGGGGGGTGTGCGCACATGATGTGC
* *
16291381 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATTAATCCTTGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
*
16291446 CCCCCTTAAAGAGCATTTGGGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
16291511 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTATTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
** * *
16291576 GCATGTGAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCGAAACTCCTTCTGAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-GAAAAAA
* * * *
16291641 TTTTAAAAAATCCCGAACCGTAAAAAGTTAT-GAAAATCGTGAAAAATAAAAAACGAGTCGTCTT
454 TTTTAAAAAATCTCGAACCGCAAAAAGTT-TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * *
16291705 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTAGAAGCCATAAAAATGGCT
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
16291770 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCG
583 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * * *
16291835 CATCCCGTCTCTCTTGTCGGCGTACTGCCCGCCCG---TCCGCTCGTTTTGTCGATTGGCTTAGG
648 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCGCTCGTTTCGTCGGTTGGCTTAGG
* * ** * *
16291897 CATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGATTACAGTAGTAGGATCGACAG
713 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGG------GT--T-GCA-GGACAG
* * * * * * * * * *
16291962 CACACAGAGGGGGACCCGACCGATTCCTGCCTTACGCATCCCGCCCCTCTGGCCGGTTGAGCACC
768 CACGCAGAGGGGGA-CTGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCC
* * **
16292027 CGTACGCTCGTTTCGTGGGTTGACTTAGGCTTACGGAGTTCATTTTGC-GTCTAA
832 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA-TTCCCAGTCTAA
* * * *
16292081 GCATACGAAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCTGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
16292146 ATCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATC-ACTGGAGCATCGTCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTC-GGAGCATCGCCGGAG
* * * * * * * *
16292210 AGCTTGACTGACGGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCTGGCGATCGGGGGGG--TGGGGGGTGTGCGCACATGATGT
*
16292275 GCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGG--CC----CCCT-ATC---CCTC----A-TCA
* * * * *
16292340 CACCCCCTTAACTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTCACAGGTTTGTTGCT
243 -A--ACC-T---T-GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
*
16292405 AGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
300 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * * * *
16292470 TGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAGATACAAGGATCACGTCAAACAAGTTT
365 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * *
16292535 GGGGCCAAAACTTCTTCCGAAAAAATTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCAT
430 GGGGCCAAAACTCCTT-CGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGT
* * *
16292600 GAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGTTTAAGGGACCATAGTATG
494 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
** *
16292665 AATTTACAAGCCATAAAATAT--CATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTA
559 AATTTACAAGCCATAAAA-ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * * *
16292728 CCACCCTATCGATCCATGGATTGCGCATTCTGTCTCTCTGGCCGGCGTAGTGCCCGCCCG--C-C
623 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGC
** * * *
16292790 CGCTCGTTTCGTTAGTTGGCTTAGGCATATGAAGTTCATTCCCAGTCTAAGAT-TG----GA-C-
688 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCG
* *** * *** ** * * * ** * *
16292848 AGAGTT-CATTTC--CACCCCTCTGGCTGACTGAGCG---CCC-G--TACGC-TCGT-TTCGT-G
753 AGGGTTGCAGGACAGCA-CGCAGAGGGGGACTGATCGATCCCCGGCTTGCGCATCCTGCCCCTCT
** * * * * * * *** *
16292901 GGTTGACTAAG-GCATACGGA-GTTC-ATTC-CCAG-T--C-TAAGCATACGGAGTTCATTCCCA
817 GGCCGGCTGAGCGC--CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
16292958 G--T--
880 GTCTAA
** *
16292960 -C-TA---AG---A-T--C-G-----GAT---A--GGACCGAGGGTTATGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
16293003 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG-CTGGAGCATCGTCAGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTC-GGAGCATCGCCGGAG
* * * ** *
16293067 AACCTGACCGGCGGTATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCATATGATGTGC
130 AACCTGACCGGCGGCATTGGGGTTCTGGCGATCGGGGGGGTGGGGGGTGTGCGCACATGATGTGC
* *
16293132 GATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
* *
16293197 CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
16293262 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* **
16293327 GCATGCCAACAAAAA-AGCAAGGATCAAGTCTACCAAGTTTGGGGGAAAAACTCCTTCCGAAAAA
390 GCATGCCAACAAAAATA-CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAAA
16293391 ATTTTAAAAAATC
453 ATTTTAAAAAATC
16293404 CTGCCCACTC
Statistics
Matches: 10645, Mismatches: 1769, Indels: 1589
0.76 0.13 0.11
Matches are distributed among these distances:
831 1 0.00
832 200 0.02
836 1 0.00
837 2 0.00
839 1 0.00
840 3 0.00
841 1 0.00
845 4 0.00
848 3 0.00
849 4 0.00
853 2 0.00
855 52 0.00
857 118 0.01
859 1 0.00
862 3 0.00
867 1 0.00
868 139 0.01
869 220 0.02
870 259 0.02
871 15 0.00
872 27 0.00
873 29 0.00
874 108 0.01
875 71 0.01
876 17 0.00
877 134 0.01
878 17 0.00
879 10 0.00
880 62 0.01
881 63 0.01
882 7 0.00
883 24 0.00
884 61 0.01
885 608 0.06
886 1175 0.11
887 155 0.01
888 8 0.00
889 15 0.00
890 9 0.00
891 4 0.00
892 15 0.00
893 68 0.01
894 417 0.04
895 417 0.04
896 208 0.02
897 7 0.00
898 363 0.03
899 206 0.02
900 1174 0.11
901 315 0.03
902 466 0.04
903 421 0.04
904 363 0.03
905 594 0.06
906 79 0.01
907 23 0.00
908 193 0.02
909 4 0.00
910 6 0.00
911 5 0.00
912 2 0.00
913 2 0.00
914 7 0.00
915 15 0.00
916 2 0.00
917 19 0.00
918 159 0.01
919 303 0.03
920 7 0.00
921 4 0.00
922 7 0.00
923 2 0.00
925 2 0.00
928 12 0.00
929 5 0.00
931 1 0.00
932 2 0.00
934 5 0.00
935 2 0.00
937 10 0.00
938 1 0.00
939 4 0.00
940 3 0.00
941 1 0.00
942 6 0.00
943 14 0.00
944 29 0.00
945 14 0.00
946 11 0.00
947 37 0.00
948 12 0.00
949 3 0.00
950 1 0.00
951 5 0.00
952 14 0.00
953 5 0.00
954 8 0.00
955 1 0.00
956 3 0.00
957 7 0.00
958 12 0.00
959 3 0.00
960 6 0.00
961 11 0.00
962 7 0.00
963 8 0.00
964 16 0.00
965 7 0.00
966 1 0.00
967 8 0.00
968 10 0.00
969 10 0.00
970 2 0.00
971 2 0.00
973 4 0.00
974 1 0.00
975 4 0.00
976 1 0.00
977 3 0.00
980 4 0.00
981 7 0.00
982 7 0.00
983 8 0.00
984 12 0.00
985 1 0.00
986 3 0.00
987 6 0.00
988 16 0.00
990 5 0.00
991 29 0.00
992 7 0.00
993 16 0.00
994 15 0.00
995 8 0.00
996 9 0.00
997 12 0.00
998 7 0.00
999 12 0.00
1000 14 0.00
1001 25 0.00
1002 22 0.00
1003 24 0.00
1004 40 0.00
1005 22 0.00
1006 21 0.00
1007 5 0.00
1008 6 0.00
1009 3 0.00
1010 11 0.00
1011 7 0.00
1012 6 0.00
1013 4 0.00
1014 13 0.00
1015 18 0.00
1016 14 0.00
1017 13 0.00
1018 7 0.00
1019 3 0.00
1020 13 0.00
1021 11 0.00
1022 17 0.00
1023 14 0.00
1024 151 0.01
1025 214 0.02
1026 167 0.02
1027 361 0.03
1028 133 0.01
1029 136 0.01
1030 151 0.01
1031 165 0.02
1032 197 0.02
1033 143 0.01
1034 85 0.01
1035 120 0.01
1036 101 0.01
1037 60 0.01
1038 96 0.01
1039 108 0.01
1040 106 0.01
1041 64 0.01
1042 99 0.01
1043 110 0.01
1044 94 0.01
1045 125 0.01
1046 98 0.01
1047 84 0.01
1048 70 0.01
1049 53 0.00
1050 49 0.00
1051 60 0.01
1052 45 0.00
1053 41 0.00
1054 27 0.00
1055 43 0.00
1056 48 0.00
1057 43 0.00
1058 46 0.00
1059 112 0.01
1060 212 0.02
1061 65 0.01
1062 59 0.01
1063 46 0.00
1064 57 0.01
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (885 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
ACCTGACCGGCGGCATTGGGGTTCTGGCGATCGGGGGGGTGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAAATT
TTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGGACAGCACGCAGAGGGGG
ACTGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:16282022 original size:26 final size:26
Alignment explanation
Indices: 16281986--16282038 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16281976 GTTGACTTAG
16281986 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16282012 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16282038 G
1 G
16282039 ATCGGATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16282919 original size:26 final size:26
Alignment explanation
Indices: 16282889--16282941 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16282879 GTTGACTTAG
16282889 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16282915 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16282941 G
1 G
16282942 GTCAGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16285822 original size:26 final size:26
Alignment explanation
Indices: 16285782--16285834 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16285772 GTACTTGGCC
*
16285782 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGATCATTCCCAATCTAA
*
16285808 GCATACGGAGATCATTCCCAGTCTAA
1 GCATACGGAGATCATTCCCAATCTAA
16285834 G
1 G
16285835 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGATCATTCCCAATCTAA
Found at i:16286705 original size:26 final size:26
Alignment explanation
Indices: 16286675--16286727 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16286665 GTTGACTTAG
*
16286675 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGACTAA
16286701 GCATACGGAGTTCATTCCCAGACTAA
1 GCATACGGAGTTCATTCCCAGACTAA
16286727 G
1 G
16286728 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGACTAA
Found at i:16287615 original size:26 final size:26
Alignment explanation
Indices: 16287579--16287631 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16287569 GTTGACTTAG
*
16287579 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16287605 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16287631 G
1 G
16287632 ATTAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16289388 original size:26 final size:26
Alignment explanation
Indices: 16289359--16289411 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16289349 GTTGACTTAG
16289359 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
16289385 GCATACTGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16289411 G
1 G
16289412 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16289851 original size:24 final size:25
Alignment explanation
Indices: 16289820--16289876 Score: 71
Period size: 26 Copynumber: 2.3 Consensus size: 25
16289810 GTTTGGGGCC
*
16289820 AAAAATCCT-TCCGAAAAAAGTTTA
1 AAAAATCCTAACCGAAAAAAGTTTA
* *
16289844 AAAAATCCTAAACCGTAAAAAGTTTC
1 AAAAATCCT-AACCGAAAAAAGTTTA
16289870 AAAAATC
1 AAAAATC
16289877 ATGAAAAATA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
24 9 0.32
26 19 0.68
ACGTcount: A:0.53, C:0.18, G:0.07, T:0.23
Consensus pattern (25 bp):
AAAAATCCTAACCGAAAAAAGTTTA
Found at i:16290762 original size:900 final size:899
Alignment explanation
Indices: 16285782--16293404 Score: 9710
Period size: 900 Copynumber: 8.5 Consensus size: 899
16285772 GTACTTGGCC
* * * *
16285782 GCATACGGAGTTCATTCCCAATCTAAGCATACGGAGATCATTCCCAGTCTAAGATCAGACCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
* * ** *
16285847 CGAGGGTTGCGGCAGCACATGGTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACCGAGG
66 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * * * *
16285912 CACCATTGCCAGAGCATCGTCGGAGAACCTGACCGACGACATTGGGGTTCCGACGATCGGGGGGG
131 CACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGAT-TGGGGGG
* * *
16285977 CCAGGGGGTGTGTGCACATGATGTGC-ATGGGTGCTGGTACCTGGCCCTTATATTGGCCCCCTAT
195 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * * *
16286041 CCCTCATCAAACCTCGAGTACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
260 CCCTCATTAATCCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
*
16286106 CAGTAGCCATTAAAGTGTCTTG--ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACAC
325 CAGTAGCCATTAAAGTGTC-TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * *
16286169 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAGTACGAGGATCACATCTACCAAGT
389 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * *
16286234 TTGGGGCCAACACACCTTCCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATC
454 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATC
* *
16286299 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACCTCACGTGACGGCTTAAGGGACCATTGTA
519 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * * *
16286364 TGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAATCGACCT
584 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
** *
16286429 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAACGTA----G-TGCCCGTCC
649 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCGCTGCCCGCCC
* * * * *
16286489 GCCCGCTCATTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAACTAGA
714 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGA
*** * * * * * * * * * * *
16286554 TTGAGGTTTGCGGTAGTAGGATCGGCAGCACGCAGAAGGGGACCTGGCTGATCCTCGACTTTCGC
779 CCAAGGGTTGCAGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGACTTACGC
* * *
16286619 ATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAG
844 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAG
* *
16286675 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGACTAAGATCGGACCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
* * *
16286740 CGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGG
66 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * * * *
16286805 CACCATCATCGGAGCATTGCCAGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATTGAGGGGG
131 CACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTG-GGGGG
*
16286870 CCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTA
195 CCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
16286935 TCCCTCATTAATCCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
259 TCCCTCATTAATCCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
16287000 CCAGTAGCCATTAAAGTGTCTGGAATGGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACAC
324 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * *
16287065 TTTGAGTTTTTGGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTTCCAAGT
389 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
*
16287130 TTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATC
454 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATC
*
16287195 ATGAAAAATAGAAAACGAGTCGCCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
519 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* *
16287260 TGAATTTACAAGCCATAAAAATGGCATTGGTACACAGAAATATGAAGATGTGCCTAAACCCACCT
584 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * * *
16287325 ACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGTCGGCATAGTGCCCGCCCGCCCG
649 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--CG-CTGCCCG
* * * * * *
16287390 CCCACCCGCTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTTTAAGATTGGACC
711 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACT
* ** * ** * *
16287455 GGACCAAGGGTTGCGGCAGCAGGATCGATAGCACATAGAGGGGGACCCGATTGATCCTCGGCTTA
776 GGACCAAGGGTTGCAGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGACTTA
* * * ** *
16287520 TGCATCCCGCCCCTCTGGCCGGTTGAGCGCTCGCACGTTCGTTTCGTGGGTTGACTTAG
841 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAG
* **
16287579 GCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
* * * *
16287644 CGAAGGTTGCGGCATCACATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGG
66 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * ** *
16287709 CACAATCGTCAGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGA
131 CACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGG-
** * * *
16287774 ATGGGGGGTGTCCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTAATATTGGCCCCCTAT
195 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * *
16287839 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
260 CCCTCATTAATCCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* *
16287904 CAGTAGCCATTAAAGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCGCAAAATCTTGTACACT
325 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * *
16287969 TCGAGCTTTTAGCTGAATTTTTTTGTGCAAGCCTACAAAAATACAAGGATCACGTCTACCAAGTT
390 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * * * * ** *
16288034 CGGGGCCAAAATTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAATTTTGAAAATCG
455 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCA
*
16288099 TGAAAAATAGAAAACGAGTCGGCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
520 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * * * *
16288164 GAATTTACAAGCCATAAAAATGGCATTGGAATGTAGAAATATGAAGATGTACGTAAACCCACCTA
585 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
** * * * *
16288229 CCACAATATCGATACACGGCTTGCGCATCCAGTCTCTCTGGCCGGAGTAGTGC-CCGCCCGCCCG
650 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCGCTGCCCGCCCG
* **
16288293 CCCACTTC-TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCGTAGTCTAAGATCGGA-TCGG
715 CCCGC-TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACT-GG
* * * * * * * **
16288356 ACCAAGAGTTTGCTGCAGCAGGATTGGTAGCACGCAGAGGGGGACCCGACTGATCCCCGGCTTGT
778 ACCAAG-GGTTGCAGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGACTTAC
* * * * *
16288421 GCAACCCGCCCCTCTTGCCAGTTGAGCACCCGCACACTCG--TC------T-A---A-
842 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAG
* * *
16288466 G-AT-CGGAGTTAATTCCCAATCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACC-GAA
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-A
** * ** * * *
16288528 TTGAGGGTTGCGGCAGCACATGCTAGGCTCAAGCATATTCTGATGCCGCATTTTTCTTCGTC-GG
65 CCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
** * * * * *
16288592 GCACCATCACCGGAGCA-CTGCCAGAGAACCTGACCGGCGGCATTGCGGTTCCGACGATCGGGGG
130 GCACCATCGTCGGAGCATC-GTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGG
* * *** *
16288656 CACCGGGGGGGTGTGCGCACATGATGTCCGATGGGCATTGGTACTTGGCCCTTATGTTGGCCCCC
194 -GCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* * * * * * *
16288721 TATCCCTCATCAAACCTCGAGAAGTCACACCTCTTTAAAGAGCTTTTGAGATTTTACAGGTTTGC
257 TATCCCTCATTAATCCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
*
16288786 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCGCAAAATCTTGTAC
322 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * *
16288851 ACTTGGAGTTTTTAGCTGAATTTTTTTGTACATGCCAACAAAAATACAAGGATCATGTCTACCAA
387 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* * * *
16288916 GTTTGGGGCCAAAACGCTTTCCGAAAAAATTTGAAAAAATCCCAAACCGCAAAAAGTTTCAAAAA
452 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAA
* * *
16288981 TCATGAAAAATAGAAAATGGGTTGTCTTGCCATGAAACCTT-ACGTGAAGGCTTAAGGGACCATT
517 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA-CTTCACGTGAAGGCTTAAGGGACCATT
* *
16289045 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCGGAAATATGAAGATGTGCCTAAACCCA
581 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCA
* * * *
16289110 CCTAGCACACTATCGATCCACGGCTTGTGCATTCCGTCTCTCTGGCCGGCGTA----G-TGCCCG
646 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCGCTGCCCG
* *
16289170 CCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGA-T
711 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACT
* ** * * * * ** * ** *
16289234 CGAACTGAGGGTTGCAGTAGCAGTATCGACAGTATGCAGAGGGGGACCCCG-CTGATCATCGGCT
776 -GGACCAAGGGTTGCAGCAGCAGGATCGGCAGCACACAGAGGGGGA-CCCGACCGATCCCCGACT
* * * * *
16289298 TACGCATCCCGCCCCTCTGGCCGGCTGAGTGCCCGTACGCTCGGTTCGTGGGTTGACTTAG
839 TACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAG
* * *
16289359 GCATACAGAGTTCATTCCCAGTCTAAGCATACTGAGTTCATTCCCAGTCTAAGATTGGACCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
* * *
16289424 CGAGGTTTGCGGCAGCACATGCTGGGCTCTGGCATGTGCTGGTGCCGCATTTTCCTTCGTCGGGG
66 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * *
16289489 CACCATCGCCGGAGCATCATCGGAGAACCTGACCGACGGCATTTGGGTTCCGACGATTGGGGGGC
131 CACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGC
*
16289554 CGGGGGGTGTGCGCACATGATGTGCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
196 CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
*
16289619 CTTCATTAATCCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
261 CCTCATTAATCCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* * *
16289684 AGTACCCATTAAAATGTCTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
326 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * *
16289749 CGAGTTTTTGGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTTTACCAAGTTT
391 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * *
16289814 GGGGCCAAAAATCCTTCCGAAAAAAGTTTAAAAAATCCTAAACCGTAAAAAGTTTCAAAAATCAT
456 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCAT
* *
16289879 GAAAAATAGAAAACGAGTCGGCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATA
521 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* * * * *
16289944 AATTTACAAGCCATAAAAACGGCATTGGCATGCACAAATATGAAGATGTGCC-ATACCTACCTAC
586 AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * *
16290008 CACCCTATCGATCCAAGGCTTACGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCTGCCCGCC
651 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--CG-CTGCCCGCC
* * *
16290073 CGCCCGCTCGTTTTGTCGGTTGGCTTAGCCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGG
713 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGG
* * *
16290138 ATCAAGGGTTGCAGCAACAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGACTTGCG
778 ACCAAGGGTTGCAGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGACTTACG
* ** * *
16290203 CATCCCGCCCCTTTTACCGGCTGAGCGCCCGCACACTCGTTTCATTGGTTCACTTAG
843 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAG
* * * * *
16290260 GCATACAGAGTTCATTCTCAGTCTAAGCATATGGACTTCATTCCCAGTCTAAGATCGGATCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
* * ** *
16290325 TGAGGGTTGCGGCAGCATATGCTGGGCTCGGGCATGTGCTGGTATCGCATTTTTCTTCGTCGAGG
66 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* **
16290390 CACCATCGTCAGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGTGATTGGGGGGC
131 CACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGC
16290455 C-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
196 CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
16290519 CCTCATTAATCCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
261 CCTCATTAATCCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* * *
16290584 AGTACCCATTAAAATGTCTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
326 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * * *
16290649 CGAGTTTTTAGCTGAATTATTTTGTGCATGCGAAAAAAAATACAAGGATCACATCTACCAAGTTT
391 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* *** * *
16290714 GGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTAT-GAAAATCG
456 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTT-TCAAAAATCA
*
16290778 TGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
520 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * * * * *
16290843 AAATTTACAAGCCATAAAAACGGCATTGGCATGCACAAATATGAAGATGTGCC-ATACCTACCTA
585 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * *
16290907 CCACCCTATCGATCCAAGGCTTACGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCTGCCCGC
650 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--CG-CTGCCCGC
* * *
16290972 CCGCCCGCTCGTTTTGTCGGTTGGCTTAGCCATACGGAGTTCATTCCCAGTCTAAGATCAGACTG
712 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTG
* * *
16291037 GATCAAGGGTTGCAGCAACAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGACTTGC
777 GACCAAGGGTTGCAGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGACTTAC
* ** * *
16291102 GCATCCCGCCCCTTTTACCGGCTGAGCGCCCGCACACTCGTTTCATTGGTTCACTTAG
842 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAG
* * * * * * *
16291160 GCATACAGAGTTCATTCTCAGTCTAAGCATATGGACTTCATTCCCAGTCTAAGATTGGATCAGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
* * ** * *
16291225 CGAGGGTTGCGGTAGCATATGCTGGGCTCGGGCATGTGCTGGTATCGCATTTTTCTTCGCCGAGG
66 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * **
16291290 CACCATCGTCAGAGCATCGTCGGAGAACCTGACTGACGGCATTGGGGTTCCGGTGATTGGGGGGG
131 CACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATT-GGGGGG
16291355 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
195 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
*
16291420 CCCTCATTAATCCTTGAGAACTCACACCCCCTTAAAGAGCATTTGGGATTTTACAGGTTTGCTGC
260 CCCTCATTAATCCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
16291485 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
325 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* ** *
16291550 TCGAGTTTTTAGCTGAATTATTTTGTGCATGTGAACAAAAATACAAGGATCACATCTACCAAGTT
390 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * * *
16291615 TGGGGCCGAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTAT-GAAAATC
455 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTT-TCAAAAATC
* *
16291679 GTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
519 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * *
16291744 TAAATTTAGAAGCCATAAAAATGGCTTTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
584 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * *
16291809 ACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTTGTCGGCGTA-----CTGCCCGCCC
649 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCGCTGCCCGCCC
* * * *
16291869 GTCCGCTCGTTTTGTCGATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGA
714 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGA
* * * * * * * * *
16291934 CCGAGGATTACAGTAGTAGGATCGACAGCACACAGAGGGGGACCCGACCGATTCCTGCCTTACGC
779 CCAAGGGTTGCAGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGACTTACGC
* * * * *
16291999 ATCCCGCCCCTCTGGCCGGTTGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAG
844 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAG
* ** * *
16292055 GCTTACGGAGTTCATTTTGC-GTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCAGA
1 GCATACGGAGTTCA-TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA
* * *
16292119 CCGAGGGTTGCTGCAGCACATGCTGGGATCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGG
65 CCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
* * * * * *
16292184 GCACCATC-ACTGGAGCATCGTCGGAGAGCTTGACTGACGGCATTAGGGTTCCGACGATCGGGGG
130 GCACCATCGTC-GGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGAT-TGGGG
* *
16292248 GGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCT
193 GGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
*
16292313 TATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAACTCAAGAACTCACACCCCCTTAAAGAG
257 TATCCCTCAT------T----AA-T-------CC-T---T-GAGAACTCACACCCCCTTAAAGAG
* * * *
16292378 CATTTGAGATTTCACAGGTTTGTTGCTAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTT
299 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* *
16292443 CAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAA
364 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * * * *
16292508 GATACAAGGATCACGTCAAACAAGTTTGGGGCCAAAACTTCTTCCGAAAAAATTTTAAAAAATCT
429 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* *
16292573 CAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCA
494 CAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * * *
16292638 CGTGAAGGTTTAAGGGACCATAGTATGAATTTACAAGCCATAAAATAT--CATTGGCACACAAAA
559 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA-ATGGCATTGGCACGCAGAA
* * * *
16292701 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGATTGCGCATTCTGTCTCTC
623 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
** * *
16292766 TGGCCGGCGTA----G-TGCCCGCCCGCCCGCTCGTTTCGTTAGTTGGCTTAGGCATATGAAGTT
688 TGGCCGGCGTAGTGCGCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* ** * *** *
16292826 CATTCCCAGTCTAAGAT-----TGGA-C-AGAGTT-------CA-TTTC--CA-C-CCCTCTGGC
753 CATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTGCAGCAGCAGGATCGGCAGCACACAGAGGG
* * * ** * **** * *
16292872 TGA-CTGAGCG---CCCG---TACGC-T--CG--TTTC-GTG--GGTTGA-CTAAGGCATAC-GG
818 GGACCCGACCGATCCCCGACTTACGCATCCCGCCCCTCTG-GCCGGCTGAGCGCCCGCACACTCG
* ***** * *
16292920 AGTTCATTCCCAGTC-TAA
882 -TTTCATGGGTTGACTTAG
16292938 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---------A---T---A---G----GAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
** *
16292977 CGAGGGTTATGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
66 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * * *
16293042 CACCATCG-CTGGAGCATCGTCAGAGAACCTGACCGGCGGTATTGGGGTTCCGACGATCGGGGGG
131 CACCATCGTC-GGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGG
* *
16293106 CCGGGGGGTGTGCGCATATGATGTGCGATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
195 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * * *
16293171 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGC
260 CCCTCATTAATCCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
*
16293236 CAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
325 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* *
16293301 TCGAGTTTTTTGCTGAATTTTTTTGTGCATGCCAACAAAAA-AGCAAGGATCAAGTCTACCAAGT
390 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA-CAAGGATCACGTCTACCAAGT
**
16293365 TTGGGGGAAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
454 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
16293405 TGCCCACTCG
Statistics
Matches: 6015, Mismatches: 622, Indels: 247
0.87 0.09 0.04
Matches are distributed among these distances:
831 1 0.00
832 200 0.03
836 1 0.00
837 2 0.00
845 2 0.00
855 66 0.01
856 8 0.00
857 111 0.02
861 1 0.00
864 1 0.00
867 1 0.00
870 1 0.00
879 1 0.00
880 74 0.01
881 72 0.01
882 7 0.00
883 24 0.00
884 67 0.01
885 560 0.09
886 6 0.00
887 4 0.00
888 2 0.00
889 3 0.00
891 2 0.00
892 8 0.00
893 228 0.04
894 425 0.07
895 557 0.09
896 454 0.08
897 1 0.00
898 7 0.00
899 74 0.01
900 957 0.16
901 345 0.06
902 429 0.07
903 524 0.09
904 334 0.06
906 2 0.00
907 1 0.00
911 4 0.00
912 1 0.00
913 4 0.00
914 2 0.00
915 1 0.00
918 140 0.02
919 298 0.05
920 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (899 bp):
GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
CACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGC
CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
CCTCATTAATCCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCAT
GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCGCTGCCCGCCCGC
CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACC
AAGGGTTGCAGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGACTTACGCAT
CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAG
Found at i:16292358 original size:23 final size:23
Alignment explanation
Indices: 16292328--16292373 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
16292318 CTCATCAAAC
16292328 CTCAAGAACTCACACCCCCTTAA
1 CTCAAGAACTCACACCCCCTTAA
16292351 CTCAAGAACTCACACCCCCTTAA
1 CTCAAGAACTCACACCCCCTTAA
16292374 AGAGCATTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.35, C:0.43, G:0.04, T:0.17
Consensus pattern (23 bp):
CTCAAGAACTCACACCCCCTTAA
Found at i:16292942 original size:26 final size:26
Alignment explanation
Indices: 16292907--16292964 Score: 107
Period size: 26 Copynumber: 2.2 Consensus size: 26
16292897 CGTGGGTTGA
16292907 CTAAGGCATACGGAGTTCATTCCCAGT
1 CTAA-GCATACGGAGTTCATTCCCAGT
16292934 CTAAGCATACGGAGTTCATTCCCAGT
1 CTAAGCATACGGAGTTCATTCCCAGT
16292960 CTAAG
1 CTAAG
16292965 ATCGGATAGG
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 27 0.87
27 4 0.13
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
CTAAGCATACGGAGTTCATTCCCAGT
Found at i:16293622 original size:26 final size:26
Alignment explanation
Indices: 16293592--16293644 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16293582 GTTGACTTAG
16293592 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
** *
16293618 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
16293644 G
1 G
16293645 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:16297276 original size:903 final size:902
Alignment explanation
Indices: 16294610--16304128 Score: 11213
Period size: 903 Copynumber: 10.7 Consensus size: 902
16294600 GCACCATCAC
* * * * *
16294610 CGGAGAACTTGACCGACGGTATTGGGGTTCCGGCGAT-AGGGGGGCCAGGGGGGTGTGCAG-ACA
1 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGC-GCACA
*
16294673 TGATGTGCGATGGGTGCTGGTACTTGGCTCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
64 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* *
16294738 AACTCACACCCCCTTAAAGAGCATTTGAGATTTCACAGGTTTGCTGCCAGTAGCTATTAAAGTGT
129 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
*
16294803 CAT-AAATGGGGACACTTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
194 C-TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
** * **
16294867 TTTTTTTGTGCACACCCACAAAAATACAAGGATCACGTCTACCAAGTTTGGTACCAAAACTCCTT
258 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
** * *
16294932 CCGAAAAAGGTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAAGGA
323 CCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
* *
16294997 GTCGTCTTGCCATGAAATTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
388 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * * *
16295062 AAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCAATCCAC
453 AAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* *
16295127 GGCTTGCGCATCCCG-TCTCTCTGGCCGACGTAGTG--C-CCGCCTGCCCGTCCGCTCGTTTCGT
518 GGCTTGCGCATCCCGCTCTCTCTGGCCGACGTAGTGCCCGCCGCCCGCCCGCCCGCTCGTTTCGT
* * * * * * *
16295188 CGATTGGCTTAAGCATACAGAGTTCATTCTCAGTCCAAGAT-TGTA-CTGAACTGAGGGTTGC-G
583 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGAAC-GAGGGTTGCAG
** * *
16295250 ACAGCAGGATCGGCAGCACATAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTT
646 -CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTC
* * * * *
16295315 TGGTCGGCTGAGCGCCCGCATGCTCGTTTCATGGGTTGACTTTGGCATACGCAGTTCATTCCCAG
710 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * * *
16295380 --T--G--TA-TGA-TTGA-----A--CT--G---G-ACC--A---AGGGTTGCGGCAACGCATG
775 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATG
* ** * * * **
16295419 CTGGGCTCGGGCATGTTCTGGTGCCGCATTTTTCTTTGTCGAGGTACCATCGCTAAAGCATCGT
840 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATC-ATCGAGCATCGT
* ** ** * **
16295483 CGGAGAACCTAACCGATGGCATTGACGTTCTGACGATCAAGGGGGCCGGGGGGTGTGCGCACATG
1 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATG
* *
16295548 ATGTGCGATGGGTGCTGGTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAA
66 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* *
16295613 CTGACA-CCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCT
131 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* *
16295677 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAAATT
196 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * * * * * *
16295742 TTTTGTGCGTGCCAACAATAATGCAACGATCACGTCT-GCATGTTTGGGGTCAAAACTCCTTCCA
261 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* * *
16295806 AAAAAATTTGAAAAAATCCCGAACCACAAAAAGTTTCTAAAATCATGAAAAATAGAAAATGAGTC
326 AAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
* * *
16295871 ATCTTGCCATGAAACTGCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAA
391 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*
16295936 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
456 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * ** *
16296001 TTGCGCATCCCG-TATCTCTGGCCGATGTAGTGTCCGCCCGTTCGCCCGCCTGCTCGTTTCGTCG
521 TTGCGCATCCCGCTCTCTCTGGCCGACGTAGTGCCCG-CCGCCCGCCCGCCCGCTCGTTTCGTCG
* * * * *
16296065 GTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAAACTGGACCAAGGGTTGCAGCAGC
585 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAACGAGGGTTGCAGCAGC
** * * * * * *
16296130 AGGATCAACAGCATGCAGAGGGGGACCTGGCCGATCCCTGGCTTGTGCATCCCGCCCCTCTGTCC
650 AGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * *
16296195 CGCTAAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
715 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * * * *
16296260 GCATGCAGAGTTCATTCCTAGTCTAGGATTGGATCGGACTGAGGGTTGCAGTAGCACATGCTGGG
780 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ***
16296325 CTCAGGCATGTGCTGGTACCGCATTTTTCTTTGCCGGGGCACCATCATCGGAGCATCGT
845 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCATC-GAGCATCGT
* * * **
16296384 CGGAGAATCTGATCGGCAGCATTGGGGTTCCGACGATCGGGGGGGGACAAGGGGGTGTGCGCACA
1 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGG-CCGGGGGGTGTGCGCACA
* * *
16296449 TGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAA
64 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
*
16296514 AACTCACTCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
129 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* *
16296579 CTGAAATGGGGACACTTTTTTCAAATGGTCATAAAATCTTGTACAATTCGA-TTTTTAGCTGAAT
194 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * * *** *
16296643 TTTTTTGTGCGTCCCAAAAAAAATACAAGGATCATACCTACCAAGTTTGGGGCAAAAAC-CCTTC
259 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * *
16296707 CGAAAAAATTTAAAAAAATCCCGAACAACAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAG
324 CGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
* *
16296772 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGATTTTACAAGCCATAAA
389 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* *
16296837 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACACACCTACCACCCTATCGATCCACG
454 AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * * *
16296902 GCTTGCGCATCCTGCT-TCTTTGGTCGACGTAGTGCCCGCCTACCCGTCCGCCCGCTCGTTTCAT
519 GCTTGCGCATCCCGCTCTCTCTGGCCGACGTAGTGCCCGCC-GCCCGCCCGCCCGCTCGTTTCGT
* * * *
16296966 CGTTTGGCTTAGGCATACGGCA-TTCATTCCCAGTCTAAGAT-AGGGCCAGAACGAGCGTTGCAG
583 CGGTTGGCTTAGGCATACGG-AGTTCATTCCCAGTCTAAGATCA-GACCGGAACGAGGGTTGCAG
** * * * *
16297029 CAGCAGGATCGATAGCACGCAAAGGGGGACCCGAGTCGATCCCCAGCTTGCGCATCCCACCCCTC
646 CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTC
* * *
16297094 TGGCTGGCTGGGCGCCCGCACGCTCG-TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCTCAG
710 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * * * * * *
16297158 ACTAAGCATAGGGAGTTGATTCCCAGTCTTAGATCGAACCTGACCAAGGGTTGTGGCAGCACATG
775 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATG
* *
16297223 CTAGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCA-C--CAT----CA---T
840 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCATCGAGCATCGT
* * ** *
16297276 CGGAGAACCTGACCGGCGGTATTGGGATTCCGGTGATC-GAGGGGCCGGGGGGTGTGCGCACATG
1 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATG
*
16297340 ATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
66 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
** * *
16297405 CTCACAGTCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATAAAAGTGTCT
131 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
*
16297470 GAAATGGGGACACGTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
196 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * *
16297535 TTTTGTGCATGCCAACACAAATACAAGGATCACGTCTACCAAGTCTGGGGCCAGAACTCCTT-CG
261 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* * * *
16297599 AAAAAAATTTTCAAAAATCTCGAACCAAAAAAAGTTTCAAAAATCGTGAAAAATA-AAAACGAGT
326 -AAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
* * * * *
16297663 CGTCTTGCCATGAAACTTCACGTGGAGGCATCAGGGACTACTGTATGAATTTACAAGCCATAAAA
390 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * *
16297728 ATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTAGCACCCTATCGATCCACGG
455 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * ** *
16297793 CTTGCGCA-CCC-CATCTCTCTGGTCGGCGTAGTG--C-CCGCCCACCCGCCCGCTTATTTCATC
520 CTTGCGCATCCCGC-TCTCTCTGGCCGACGTAGTGCCCGCCGCCCGCCCGCCCGCTCGTTTCGTC
* * * * * * *
16297853 AGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACTGGACCAAGGGTTGTAGTAG
584 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAACGAGGGTTGCAGCAG
* * * * * *
16297918 CAGGATCGACAGCACGTAGAAGGGGACCTGATCGATCCCCGGCTTGCGCATCCCGCCCCACTGGC
649 CAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * * * *
16297983 CGGTTGAACGCCCGCACGTTCGTTTCATGGGTTGAGTTAGGCATACGGAGTTCATTCCCAGTCTA
714 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
*
16298048 AGCATATGGAGTTCATTCCCAGTCTAAGAT----------CGAGGGTTGCGGCAGCACATGCTGG
779 AGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCTGG
** * * * * * *** *
16298103 GCTCGACCATGTGCAGATGTCACATTTTTCTTCGTCGGGGCACCATTGCCAGAGCATC-C
844 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCATC-GAGCATCGT
* **
16298162 CGGAGAA-CTAGACCGACGGCATTGGGGTTCCGACGAT-AAGGGGGCCGGGGGGTGTGCGCACAT
1 CGGAGAACCT-GACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACAT
* * *
16298225 GATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAAA
65 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
*
16298290 ACTCTCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
130 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
16298355 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
195 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * ** *
16298420 TTTTTGTGCATGCCAACACAAATACAAGGATCACATCTACCAAGTTTGGGGCCTGAACTCATTCC
260 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * ** * *
16298485 GAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGT
325 GAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
* ** * *
16298550 CATCTTGCTGTGAAACTTCACGTGAAGGCATAAGGGACCACTGTATGAATTTACAAGCCATAAAA
390 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* *
16298615 ATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGG
455 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * *
16298680 CTTGCGCATCGCG-TCTCTCTGGTCGACGTAGTGCTCGCCCGCCACCCGCCCTCCCGCCCGCTCG
520 CTTGCGCATCCCGCTCTCTCTGGCCGACGTA--G-T-GCCCG----CCGCCCGCCCGCCCGCTCG
* * *
16298744 TTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTT
577 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAACGAGGGTT
* * * * * **
16298809 GCGGTAGCAGGATCGGTAGCATGCAGAGGGGGACCCGACTGATCCCCGGCTTGCATATCCCGCCC
642 GCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCC
* * ** * * * *
16298874 CTCTGGCTGGTTGAATGCCCGTACGCTTGTTTCATGGGTTGACTTAGGCATACTGAGTTCATTCC
707 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * ** * *
16298939 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTAGATCGAGGGTTGCAGCAGCAC
772 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCAC
* ** * *
16299004 GTTTTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCAT--T---G---C-
837 ATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCATCGAGCATCG
16299060 -
902 T
* * * *
16299060 CGGAGAACCTGACCAGCGGCATTAGGGTTCCGACGAT--AGGGGGCC-GGGGGTGTGTGCACATG
1 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATG
16299122 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
66 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * *
16299187 CTCGCACGCCCTTAAAGAGCATTTGAGATTTTACGGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
131 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* *
16299252 GAAATGGGGACACTTTTTTCAAATGGTCATAAAATCTTGTACAATTCGAGTTTTTAGCTGAATTT
196 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * *** * *
16299317 TTTTGTGCGTCCCAACAAAAATACAAGGATTATACCTACCAAGTTTGGGGCAAAAAC-CCTTCCA
261 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
*
16299381 AAAAAATTTAAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
326 AAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
* *
16299446 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGAGCATTGTATGAATTTACAAGCCATAAAAA
391 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
** * * *
16299511 TGGCATTGGCGTGCAGAAATATGAAGATGTGCCTAAACACACGTACTACCCTATCGATCCACGGC
456 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * *
16299576 TTGCGCATCAC-ATCTCTCTGGCCGGCGTAGT-------GCCCGCCCGTCCGCTCATTTCGTCGG
521 TTGCGCATCCCGCTCTCTCTGGCCGACGTAGTGCCCGCCGCCCGCCCGCCCGCTCGTTTCGTCGG
* * * *
16299633 TTGGCTTAGGCATAC-GAGTTCATTCCCAGTCTAAGATCAGATCGG-ACTGAGGGTTACGGCCGC
586 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAAC-GAGGGTTGCAGCAG-
* * * ** * **
16299696 CA-GATTGGTAGCACGCAGAGGGGGACCCGGCCGATCCATGGCTTACGCATCATGCCCCTCTGG-
649 CAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* *
16299759 CTGCTTGAGCGCCCGCACGCTCGTTTCCTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
714 CGGC-TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * * *
16299824 AACCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCACATGAT-
778 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCTG
** * * ** * **
16299888 GGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCATAGAGGTGCCATCGTCGGAGCATCAC
843 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCATC-GAGCATCGT
* * ** *** * ***
16299949 CGGAGAACCTGACCGACGGCACTGGGGCACC-ATCG-TCGGAGCATCGTCGGAGAACCTGAT-CG
1 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGG-G-GGGGCCGG-G-GGGTG-TGC-
* * * *
16300011 GCAGCATTAGGGTTCCGACGATCGGGGGGGCAAGGGGGTGTGTGCACATGATGTGCGATGGGTGC
59 GCA-CATGA-TG-T--G-CGAT---GGGTGC-------TG-GT--AC-T--TG-GC-------CC
** ** * **
16300076 TGGTA-ATTTTCCCTTATATTAGCCCCCTATGC-CTCATCAAACCTCGAGAACTCACACCCCCTT
94 T--TATATTGGCCC-CCTA-T--CCCTC-AT-CAAAC-------CTCGAGAACTCACACCCCCTT
* *
16300139 AAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAATGGGGACAC
144 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * * *
16300204 TTTTTTAAAATGGTCAGAAAATCTTGTACACTTCAAGTTTTTAGCTG-ATGTTTTTCGTGCATGC
209 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTTGTGCATGC
* * *
16300268 CAA-AAAAAGTACAAGGATCACGGCTACCTAGTTTGGGGACAAAACTCCTTCCGAAAAAATTTTA
273 CAACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
* **
16300332 AAAAATCTCGAACTGTCAAAAAGTTTCAAAAAT-AGTGAAAAATAGAAAACGAGTCGTCTTGCCA
337 AAAAATCCCGAAC-CACAAAAAGTTTCAAAAATCA-TGAAAAATAGAAAACGAGTCGTCTTGCCA
*
16300396 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGG
400 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* *
16300461 CACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATC
465 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * *
16300526 CCG-TCTCTTTGCCCGACGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCATCGGTTGGCTTA
530 CCGCTCTCTCTGGCCGACGTAGTGCCCG-CCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * **
16300590 GGCATACGGAGTTCATTCCCAGTCTAAG-TCAGACTGGACCGAGGGTTGCAGCAGCAAAAAT-GG
594 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAACGAGGGTTGCAGCAGC-AGGATCGG
* *
16300653 CAGAATGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
658 CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * * * * * *
16300718 GCCTGCACGGTCGTTTCGTGAGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATGCAG
723 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * * * * **
16300783 AGTTTATTCCCAGTCTAAGATC-AGACCCGATCAAGGGTTGTGGCAGCACATGCTGGGCTTAGGC
788 AGTTCATTCCCAGTCTAAGATCGA-ACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * **
16300847 ATGTGCTGGTGCCGCATTTTTCTTCACCGAGACACCATCGCCAGAGCATCGT
852 ATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCATC-GAGCATCGT
* * * *
16300899 CGGAGAACCTGACCGACGGTATTGGGGTTCTGACGATC-GGAGGGCCGGGGGGTGTGCGCACATG
1 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATG
* * *
16300963 ACGTGCGATGGGTGCTGGTACTTTGCCCTTATATT-GCCCCCTATCCCTCATCGAACCTCGAGAA
66 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
16301027 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
131 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
*
16301092 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTT
196 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * ** *
16301157 TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATGTTTTCG
261 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* * ** *
16301222 AAAAAATTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAGAAATAGAAAACGAGTC
326 AAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
* *
16301287 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGCATGAATTTACAAGCCATAAAAA
391 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
16301352 TGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
456 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
** * * * ** *
16301417 TTGCTTATCTCG-TCTCTCTGGCCGGCGTACTG--C-CCGCCCATCCGCCCGCTCGTTTCATCGG
521 TTGCGCATCCCGCTCTCTCTGGCCGACGTAGTGCCCGCCGCCCGCCCGCCCGCTCGTTTCGTCGG
* * * * * * * * *
16301478 TGGGCTTAGGCATACAGACTTCATTCCCAGTCTAAGATCAAATCTG-ACTGAGGGTTACGGTAGC
586 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAAC-GAGGGTTGCAGCAGC
* * * * *
16301542 AGGATCGGCAGCACACAGAGAGGGACCCGATCGATCCCCGGCTTGCACATCCCGCCCCTTTGGCC
650 AGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* *
16301607 GGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T--
715 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
16301668 -C-TA---AG---------A-TC------CG-ACCGGATCGAGGGTTACGGCAGCACATGCTGGG
780 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
16301711 ATCGGGCGTGTGCTGGTGACGTATTTTTCCTC-TCCGGGG------CA-C---CATCGT
845 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCAT-CGGGGCACCATCATCGAGCATCGT
* * * * *
16301759 CGGAGAACCTGACGGGCAGCATTGGGGTTCCGACGATCGGGGGAGCCAGGTGGTGTGCGCACATG
1 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATG
* * *
16301824 ATGTGCAAT-GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTTGAGAA
66 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
*
16301888 CTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
131 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
*
16301953 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTT
196 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* *
16302018 TTTTGTGCATGCCAAC-AAAATACAAGGATCACGTCTATCAAGTTTGGGGCCAAAACTCCATCCG
261 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* **
16302082 AAAAAATTTTAAGAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
326 AAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
16302147 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
391 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * *
16302212 TGGAATTGGCTCACAGAAATATGAAGATGTGCCTAAACCC-CCTACCACCCTATCGATCCACGGC
456 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
** * *
16302276 TTGCGCAT-CCTATCTCCCTGGCCGACGTAGTG--C-CTGCCCGCCCGCCCGCTCGTTTCGTCGG
521 TTGCGCATCCCGCTCTCTCTGGCCGACGTAGTGCCCGCCGCCCGCCCGCCCGCTCGTTTCGTCGG
** * * *
16302337 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACC-GAACCATGGGTTGCGGCAGT
586 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAACGA-GGGTTGCAGCAGC
* * ** *
16302401 AGGATCGGCAGCATGCAGAAGGGGACCCGACCGATCCCTAGCTTACGCATCCCGCCCCTCTGGCC
650 AGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * *
16302466 GACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCATTCTAA
715 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
16302531 GCATACGAAGTTTATTCCCAGTCTAAGATC-AGACCGGACCGAGGGTTGTGACAGCACATGCTGG
780 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * *
16302595 GCTCGGGCATGTGCTAGTGCCGTATTTTTCTTCACCGGGG------CA-C---CATCGT
844 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCATCGAGCATCGT
* * * ** * *
16302644 CGGAGAACTTGATCGGTGAAATTGGGGTTCCGACTATCGGGGGGGCCGGGGGGGCTGTGCACACA
1 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGG-TGTGCGCACA
* * * * * * *
16302709 TAATGCGTGATGGGTGCTGGTACTTGGCCATCATATTGGCGCCCTATCCCTCCTCAAACCTCGAG
64 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* * *
16302774 AACTCACACCCCCATAAAGAACATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGT
129 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
*
16302839 CTGAAATGGGGACACTTCTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
194 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
*
16302904 TGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
259 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * *
16302969 C-AAAAAAGTTTTAAAAAATCCCGAACCCCAAAAAGTTTCAAAAATCGTGAAAAACAGAAAACGA
324 CGAAAAAA-TTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
* **
16303033 GTTGTCTTGCCATGAAACTTCTTGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
388 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * * * *
16303098 AAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACACTATTGATACAA
453 AAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * *
16303163 GGCTTGCGCAACCCG-TCTCTCTGGCTGACGTAGTGCCTG--G-CCACCCGCCCGCTCGTTTCGT
518 GGCTTGCGCATCCCGCTCTCTCTGGCCGACGTAGTGCCCGCCGCCCGCCCGCCCGCTCGTTTCGT
* * *
16303224 CTGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGC-GAC
583 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAACGAGGGTTGCAG-C
* * * * * * * *
16303288 AGTAGGATCAGCAGCACACAGAGGGGGACCTGGCCGATCCTCGGCTTACGCATCCCGCCCCTCTT
647 AGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
* * * * * *
16303353 GTCGGCTGAGTGCCCGCACGCTCATTTCGTGGGCTAACTTAGGCATACGGAGTTCATTCTCAGTC
712 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
*
16303418 TAAG-ATA--G-G---------A--C------CG-A----ACCGAGGGTTACGGCAGCACATGCT
777 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCT
*
16303457 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGG------CA-C---CATCGT
842 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCATCGAGCATCGT
* * *
16303508 CGGAGAACTTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGG-CGGGGGAGTGTGCACACAT
1 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGG-GTGTGCGCACAT
** *
16303572 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATTGAACCTCAAGA
65 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* * *
16303637 ACTCACACCCCGTTGAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
130 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * *
16303702 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTTCACTTCGAGGTTTTAGCTGTATT
195 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
*
16303767 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC
260 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * * ** *
16303832 GAAAAAATATTAAAAAATCACGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGT
325 GAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
* * *
16303897 CGCCTTGCCATGATACTTCACGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
390 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * *
16303962 ATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTGTCGATCCACGG
455 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * * *
16304027 CTTGCACATCCCG-TCTCTCTGGTCGATGTAGTGGCCGCTCGCCCGCCCGCCTGCTTGTTTCGTC
520 CTTGCGCATCCCGCTCTCTCTGGCCGACGTAGTGCCCGC-CGCCCGCCCGCCCGCTCGTTTCGTC
*
16304091 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTATAAG
584 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
16304129 CATACGGAGT
Statistics
Matches: 7474, Mismatches: 924, Indels: 503
0.84 0.10 0.06
Matches are distributed among these distances:
858 3 0.00
859 231 0.03
860 264 0.04
861 200 0.03
862 454 0.06
863 8 0.00
864 114 0.02
865 4 0.00
866 54 0.01
868 3 0.00
869 1 0.00
871 290 0.04
872 147 0.02
873 114 0.02
874 8 0.00
875 174 0.02
876 60 0.01
877 4 0.00
878 45 0.01
879 199 0.03
880 40 0.01
881 1 0.00
882 2 0.00
883 3 0.00
884 4 0.00
885 159 0.02
886 510 0.07
887 176 0.02
888 203 0.03
889 417 0.06
890 456 0.06
891 61 0.01
892 37 0.00
893 3 0.00
894 1 0.00
895 210 0.03
896 319 0.04
897 134 0.02
898 255 0.03
899 4 0.00
900 187 0.03
901 302 0.04
902 21 0.00
903 564 0.08
904 165 0.02
905 5 0.00
907 1 0.00
908 65 0.01
909 4 0.00
911 1 0.00
912 4 0.00
913 7 0.00
914 3 0.00
915 4 0.00
916 1 0.00
918 2 0.00
919 2 0.00
922 2 0.00
923 1 0.00
925 1 0.00
926 4 0.00
927 6 0.00
928 6 0.00
929 3 0.00
931 4 0.00
932 3 0.00
933 1 0.00
936 5 0.00
938 7 0.00
939 171 0.02
940 30 0.00
941 183 0.02
942 1 0.00
943 1 0.00
944 4 0.00
945 4 0.00
946 3 0.00
947 1 0.00
948 6 0.00
949 211 0.03
950 103 0.01
951 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (902 bp):
CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATG
ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
AAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
TTGCGCATCCCGCTCTCTCTGGCCGACGTAGTGCCCGCCGCCCGCCCGCCCGCTCGTTTCGTCGG
TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAACGAGGGTTGCAGCAGCA
GGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
CATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCATCGAGCATCGT
Found at i:16297656 original size:27 final size:26
Alignment explanation
Indices: 16297599--16297657 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 26
16297589 AACTCCTTCG
* **
16297599 AAAAAAATTTTCAAAAATCTCGAACC
1 AAAAAAAGTTTCAAAAATCTCGAAAA
16297625 AAAAAAAGTTTCAAAAATCGT-GAAAA
1 AAAAAAAGTTTCAAAAATC-TCGAAAA
*
16297651 ATAAAAA
1 AAAAAAA
16297658 CGAGTCGTCT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 27 0.96
27 1 0.04
ACGTcount: A:0.61, C:0.12, G:0.07, T:0.20
Consensus pattern (26 bp):
AAAAAAAGTTTCAAAAATCTCGAAAA
Found at i:16298053 original size:26 final size:26
Alignment explanation
Indices: 16298023--16298075 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16298013 GTTGAGTTAG
16298023 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16298049 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16298075 G
1 G
16298076 ATCGAGGGTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16298951 original size:26 final size:26
Alignment explanation
Indices: 16298921--16298973 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16298911 GTTGACTTAG
*
16298921 GCATACTGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16298947 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16298973 G
1 G
16298974 ATTGGACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16299837 original size:26 final size:26
Alignment explanation
Indices: 16299801--16299851 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
16299791 TTGACTTAGG
16299801 CATACGGAGTTCATTCCCAGTCTAAC
1 CATACGGAGTTCATTCCCAGTCTAAC
16299827 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
16299852 GATCGGACCG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAC
Found at i:16302542 original size:26 final size:26
Alignment explanation
Indices: 16302505--16302557 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16302495 GTTGACTTAG
* *
16302505 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
16302531 GCATACGAAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16302557 G
1 G
16302558 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16303407 original size:890 final size:878
Alignment explanation
Indices: 16293406--16304128 Score: 10573
Period size: 903 Copynumber: 12.1 Consensus size: 878
16293396 AAAAAATCCT
* * * * * *
16293406 GCCCACTCGTTTCGTCGGTTGGCTTAGGCATAGGGAATTCATTCCCAGTCTATGATCGGACCGGA
1 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAA
* * * * ** ** * * *
16293471 CCGA-GGGTTGCGGCAGCATGATCGGCAGCATGCAG-AGGGTGACCCGGTCAATCCCTGGCTTGC
66 CC-ATGGGTTGCGACAGTAGGATCAGCAGCACACAGAAGGG-GACCCGACCGATCCCTAGCTTAC
* * * * * * * *
16293534 GCATCCCACCCCTTTGGCC-AGCTAAGCACCCGCACACTCATTTCATGGGTTGACTTAGGCATAC
129 GCATCCCGCCCCTCTGGCCGA-CTGAGCGCCCGCACGCTCATTTCGTGGGCTAACTTAGGCATAC
** * * *
16293598 AAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCATTCTAAGATCAGACCGGACCGAAGG
193 GGAGTTCATT--C--TC--AGCATAC-GAGTTTATTCCCAGTCTAAGATC-GACCGGACCGAGGG
* * * * * * ** *
16293663 TTGCAGCAGCATAAGCTGGGCTTGGGCATGTGCTAGTGCCGTATTTTTCTTCGTCAGGGCACCAT
250 TTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCAT
* * * ** * * *
16293728 CGTTGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTTCGGTGATCGGGAGGGTCGGCG
315 C------G--T---CGGAGAACTTGA-CGG-GACATTGGGGTTCCGACGATCGGGGGGGCCGGGG
* * *
16293793 GGGTGTGCACACATGATGTGCGATGGGTGGTGGTACTTGGCCCTTATCTTGGCCCCCTATCCTTC
367 GGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * * * * *
16293858 AGCAAACCTCAAGAACTCTCACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAATA
432 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTA
* *
16293923 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCGCAAAATCTTGTACACTTGGAG
497 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * * *
16293988 TTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATTCAAGGATCATGTCTACCAAGTTTAGGG
562 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * * * ** *
16294053 CCAAAACTCCTTCCGAAAAAATTGTAAAAATTCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAA
627 CCAAAACTCCTTCC-AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAA
* * * *
16294118 AATATAAAACGAGTCATCTTGCCATGAAACTTCATGTGAAGGGTTAAGGGACCATTGTATGAATT
691 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* *
16294183 TACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTGCCACC
756 TACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * ** * * * *
16294248 CTATCAATCCACGGCATGTGCATCTTGCCTTTCTGGCCGACGTAGTGCCTGCCTGCTCGTTC
821 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGACGTAGTGCCTGCCCGC-C---C
* * * *
16294310 GCCTGCTCGTTTCGTCGATTGGCTTA-GAAGTACGGTGTTCATTCCCAGTCTAAGATCAGACC-A
1 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCA-TACGGAGTTCATTCCCAGTCTAAGATCAGACCGA
* * * * * * **
16294373 GACCGA-GGGCTATG-G-TAGCAGGATC-GATAGCACGCAGAGGGGGATCCGACCGATCCCCGGC
65 -ACC-ATGGG-T-TGCGACAGTAGGATCAG-CAGCACACAGAAGGGGACCCGACCGATCCCTAGC
* * ** * * * *
16294434 TTGCGCATCCCGCCCCTCTAGCCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCA
125 TTACGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGCTAACTTAGGCA
* * * * *
16294499 TATGGATTTCA-T-TC--C-T---AG-----T-----T-TAAGATCGGACCGAATCGAGGGTT-T
190 TACGGAGTTCATTCTCAGCATACGAGTTTATTCCCAGTCTAAGATC-GACCGGACCGAGGGTTAC
* ** * * * ** *
16294544 GAACAGTGCATGCTGGGCTTGGGAATGTGCCGGTGCCCGTATTTTTCTTCGTCGGGGCACCATCA
254 G-GCAGCACATGCTGGGCTCGGGCATGTGCTGGTG-CCGTATTTTTCTTCACCGGGGCACCATCG
* * * * * *
16294609 CCGGAGAACTTGACCGACGG-TATTGGGGTTCCGGCGAT-AGGGGGGCCAGGGGGGTGTGCAGAC
317 TCGGAGAACTTGA-CG--GGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCACAC
*
16294672 ATGATGTGCGATGGGTGCTGGTACTTGGCTCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
379 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* * *
16294737 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTCACAGGTTTGCTGCCAGTAGCTATTAAAGTG
444 GAACTCACACCCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
*
16294802 TCAT-AAATGGGGACACTTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
509 TC-TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
** * **
16294866 ATTTTTTTGTGCACACCCACAAAAATACAAGGATCACGTCTACCAAGTTTGGTACCAAAACTCCT
573 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
** * * *
16294931 TCCGAAAAAGGTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAAGG
638 TCC-AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
* *
16294996 AGTCGTCTTGCCATGAAATTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
702 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* * *
16295061 AAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCAATCCA
767 AAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * *
16295126 CGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCC
832 CGGCTTGCGCATCCCGTCTCTCTGGCTGACGTAGTGCCTGCCCGCCC
* * * * * * * *
16295173 GTCCGCTCGTTTCGTCGATTGGCTTAAGCATACAGAGTTCATTCTCAGTCCAAGAT-TGTACTGA
1 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGA
* * * * * * *
16295237 ACTGA-GGGTTGCGACAGCAGGATCGGCAGCACATAGAGGGGGACCCGACCGATCCCCAGCTTGC
65 AC-CATGGGTTGCGACAGTAGGATCAGCAGCACACAGAAGGGGACCCGACCGATCCCTAGCTTAC
* * * * * * * * *
16295301 GCATCCCGCCCCTTTGGTCGGCTGAGCGCCCGCATGCTCGTTTCATGGGTTGACTTTGGCATACG
129 GCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGCTAACTTAGGCATACG
* * * * * * *
16295366 CAGTTCA-T-TC--C---C-AGTGTA-T--GA-T-T--GA---ACTGGACCAAGGGTTGCGGCAA
194 GAGTTCATTCTCAGCATACGAGTTTATTCCCAGTCTAAGATCGACCGGACCGAGGGTTACGGCAG
* * * *** *
16295413 CGCATGCTGGGCTCGGGCATGTTCTGGTGCCGCATTTTTCTTTGTCGAGGTACCATCGCTAAAGC
259 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTC--T-TC-----ACCGGGGC---ACC
* * ** * **
16295478 ATCGTCGGAGAACCTAACCGATGG-CATTGACGTTCTGACGATCAAGGGGGCC-GGGGGGTGTGC
313 ATCGTCGGAGAACTTGA-CG--GGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGC
* *
16295541 GCACATGATGTGCGATGGGTGCTGGTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACC
375 ACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * * *
16295606 TTGAGAACTGACA-CCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAA
440 TCGAGAACTCACACCCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
*
16295670 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGC
505 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * * * * * * *
16295735 TGAAATTTTTTGTGCGTGCCAACAATAATGCAACGATCACGTCT-GCATGTTTGGGGTCAAAACT
570 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * *
16295799 CCTTCCAAAAAAATTTGAAAAAATCCCGAACCACAAAAAGTTTCTAAAATCATGAAAAATAGAAA
635 CCTTCC-AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAA
* * * *
16295864 ATGAGTCATCTTGCCATGAAACTGCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCC
699 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* *
16295929 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
764 ATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * *
16295994 CCACGGCTTGCGCATCCCGTATCTCTGGCCGATGTAGTGTCC-GCCCGTTCGCCC
829 CCACGGCTTGCGCATCCCGTCTCTCTGGCTGACGTAGTG-CCTG-CC---CGCCC
* * * * *
16296048 GCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAAACTGGA
1 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAA
* * * ** * * * * **
16296113 CCAAGGGTTGC-AGCAGCAGGATCAACAGCATGCAGAGGGGGACCTGGCCGATCCCTGGCTTGTG
66 CCATGGGTTGCGA-CAGTAGGATCAGCAGCACACAGAAGGGGACCCGACCGATCCCTAGCTTACG
* * * *
16296177 CATCCCGCCCCTCTGTCCCG-CTAAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACG
130 CATCCCGCCCCTCTG-GCCGACTGAGCGCCCGCACGCTCATTTCGTGGGCTAACTTAGGCATACG
* * * * * * *
16296241 GAGTTCATTCCCAGTCTAAGCATGCAGAGTTCATTCCTAGTCTAGGATTGGATCGGACTGAGGGT
194 GAGTTCATT--C--TC--AGCATAC-GAGTTTATTCCCAGTCTAAGA-TCGACCGGACCGAGGGT
* * * * * * **
16296306 TGCAGTAGCACATGCTGGGCTCAGGCATGTGCTGGTACCGCATTTTTCTTTGCCGGGGCACCATC
251 TACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGG------C
* * **
16296371 ATCGGAGCATCGTCGGAGAA-TCTGATCGGCAGCATTGGGGTTCCGACGATCGGGGGGGGACAAG
310 A-C----CATCGTCGGAGAACT-TGA-CGGGA-CATTGGGGTTCCGACGATC-GGGGGGGCCGGG
* *
16296435 GGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCT
366 GGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* * * *
16296500 CATCAAACCTCAAAAACTCACTCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
431 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGT
* *
16296565 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCATAAAATCTTGTACAATTCGA
496 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * * ***
16296630 -TTTTTAGCTGAATTTTTTTGTGCGTCCCAAAAAAAATACAAGGATCATACCTACCAAGTTTGGG
561 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * ** *
16296694 GCAAAAAC-CCTTCCGAAAAAATTTAAAAAAATCCCGAACAACAAAAAGTTTCGAAAATCATGAA
626 GCCAAAACTCCTTCC-AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAA
* *
16296758 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGATT
690 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* * *
16296823 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACACACCTACCAC
755 TTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * *
16296888 CCTATCGATCCACGGCTTGCGCATCCTG-CTTCTTTGG-TCGACGTAGTGCCCGCCTACCCGTCC
820 CCTATCGATCCACGGCTTGCGCATCCCGTC-TCTCTGGCT-GACGTAGT----GCCTGCCCGCCC
* * *
16296951 GCCCGCTCGTTTCATCGTTTGGCTTAGGCATACGGCA-TTCATTCCCAGTCTAAGAT-AGGGCCA
1 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG-AGTTCATTCCCAGTCTAAGATCA-GACC-
* * * * * * *
16297014 GAACGA-GCGTTGC-AGCAGCAGGATC-GATAGCACGCA-AAGGGGGACCCGAGTCGATCCCCAG
63 GAACCATGGGTTGCGA-CAGTAGGATCAG-CAGCACACAGAA-GGGGACCCGA-CCGATCCCTAG
* * * * * * * *
16297075 CTTGCGCATCCCACCCCTCTGGCTGGCTGGGCGCCCGCACGCTC-GTTCGTGGGTTGACTTAGGC
124 CTTACGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGCTAACTTAGGC
* * * * *
16297139 ATACGGAGTTCATTCTCAGACTAAGCATAGGGAGTTGATTCCCAGTCTTAGATCGAACCTGACCA
189 ATACGGAGTTCATTCT----C--AGCATA-CGAGTTTATTCCCAGTCTAAGATCG-ACCGGACCG
** * *
16297204 AGGGTTGTGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCA
246 AGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCA
* * ** * ** *
16297269 CCATCATCGGAGAACCTGACCGGCGGTATTGGGATTCCGGTGATC-GAGGGGCC-GGGGGGTGTG
311 CCATCGTCGGAGAACTTGA-CGG-GACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTG
* *
16297332 CGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
374 CACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
** * * *
16297397 CTCGAGAACTCACAGTCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATAA
439 CTCGAGAACTCACACCCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
*
16297462 AAGTGTCTGAAATGGGGACACGTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
504 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * *
16297527 CTGAATTTTTTTGTGCATGCCAACACAAATACAAGGATCACGTCTACCAAGTCTGGGGCCAGAAC
569 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* * * ** *
16297592 TCCTTCGAAAAAAATTTTCAAAAATCTCGAACCAAAAAAAGTTTCAAAAATCGTGAAAAATA-AA
634 TCCTTC-CAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAA
* * * * *
16297656 AACGAGTCGTCTTGCCATGAAACTTCACGTGGAGGCATCAGGGACTACTGTATGAATTTACAAGC
698 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
** * *
16297721 CATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTAGCACCCTATCGA
763 CATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * * *
16297786 TCCACGGCTTGCGCACCCCATCTCTCTGG-TCGGCGTAGTGCCCGCCCACCC
828 TCCACGGCTTGCGCATCCCGTCTCTCTGGCT-GACGTAGTGCCTGCCCGCCC
** * * * * *
16297837 GCCCGCTTATTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACTGGA
1 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAA
* * * * ** * * ** *
16297902 CCAAGGGTTG-TAGTAGCAGGATC-GACAGCACGTAGAAGGGGACCTGATCGATCCCCGGCTTGC
66 CCATGGGTTGCGA-CAGTAGGATCAG-CAGCACACAGAAGGGGACCCGACCGATCCCTAGCTTAC
* ** * * * * * * *
16297965 GCATCCCGCCCCACTGGCCGGTTGAACGCCCGCACGTTCGTTTCATGGGTTGAGTTAGGCATACG
129 GCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGCTAACTTAGGCATACG
* *
16298030 GAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGAT---------CGAGGGTT
194 GAGTTCATT--C--TC--AGCATA-CGAGTTTATTCCCAGTCTAAGATCGACCGGACCGAGGGTT
* ** * * * ** **
16298086 GCGGCAGCACATGCTGGGCTCGACCATGTGCAGATGTCACATTTTTCTTCGTCGGGGCACCATTG
252 ACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCA-T-
* **
16298151 CCAGAGCATCCCGGAGAACTAGACCGACGG-CATTGGGGTTCCGACGAT-AAGGGGGCC-GGGGG
315 -C---G--T--CGGAGAACTTGA-CG--GGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGG
* *
16298213 GTGTGCGCACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
369 GTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* * * *
16298278 CAAACCTTGAAAACTCTCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
434 CAAACCTCGAGAACTCACACCCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
16298343 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
499 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* *
16298408 TTTAGCTGAATTTTTTTGTGCATGCCAACACAAATACAAGGATCACATCTACCAAGTTTGGGGCC
564 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
** * * * * * *
16298473 TGAACTCATTCCGAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTCGAAAATCGTGAAAAA
629 AAAACTCCTTCC-AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAA
* ** * *
16298538 TAGAAAACGAGTCATCTTGCTGTGAAACTTCACGTGAAGGCATAAGGGACCACTGTATGAATTTA
693 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
**
16298603 CAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
758 CAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * *
16298668 ATCGATCCATGGCTTGCGCATCGCGTCTCTCTGG-TCGACGTAGTGCTCGCCCGCCACCCGCCCT
823 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCT-GACGTA--G-T-GCCTG---CCCG----
16298732 CCC
876 CCC
*
16298735 GCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
1 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GA
* * ** * * * ** * * ** * *
16298800 TCGA-GGGTTGCGGTAGCAGGATCGGTAGCATGCAGAGGGGGACCCGACTGATCCCCGGCTTGCA
65 ACCATGGGTTGCGACAGTAGGATCAGCAGCACACAGAAGGGGACCCGACCGATCCCTAGCTTACG
* * ** ** * ** * * * *
16298864 TATCCCGCCCCTCTGGCTGGTTGAATGCCCGTACGCTTGTTTCATGGGTTGACTTAGGCATACTG
130 CATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGCTAACTTAGGCATACGG
* * ** *
16298929 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTAGATCGAGGGTT
195 AGTTCATT--C--TC--AGCATAC-GAGTTTATTCCCAGTCTAAGA-TCGACCGGACCGAGGGTT
* * * ** * * ** *
16298994 GCAGCAGCACGTTTTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATTG
252 ACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCG
* * * * *
16299059 CCGGAGAACCTGACCAGCGG-CATTAGGGTTCCGACGAT--AGGGGGCCGGGGGTGTGTG--CAC
317 TCGGAGAACTTGA-C-G-GGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCACAC
16299119 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
379 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* * * *
16299184 GAACTCGCACGCCCTTAAAGAGCATTTGAGATTTTACGGGTTTGCTGCCAGTAGCCATTAAAGTG
444 GAACTCACACCCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* *
16299249 TCTGAAATGGGGACACTTTTTTCAAATGGTCATAAAATCTTGTACAATTCGAGTTTTTAGCTGAA
509 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * * *** *
16299314 TTTTTTTGTGCGTCCCAACAAAAATACAAGGATTATACCTACCAAGTTTGGGGCAAAAAC-CCTT
574 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* *
16299378 CCAAAAAAATTTAAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
639 CC-AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
* *
16299443 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGAGCATTGTATGAATTTACAAGCCATAA
703 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
** * * * *
16299508 AAATGGCATTGGCGTGCAGAAATATGAAGATGTGCCTAAACACACGTACTACCCTATCGATCCAC
768 AAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * *
16299573 GGCTTGCGCATCACATCTCTCTGGCCGGCGTA--G--TGCCCGCCC
833 GGCTTGCGCATCCCGTCTCTCTGGCTGACGTAGTGCCTGCCCGCCC
* * * *
16299615 GTCCGCTCATTTCGTCGGTTGGCTTAGGCATAC-GAGTTCATTCCCAGTCTAAGATCAGATCGGA
1 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAA
* * * * * ** * * * * * *
16299679 CTGA-GGGTTACGGCCGCCA-GATTGGTAGCACGCAGAGGGGGACCCGGCCGATCCATGGCTTAC
66 C-CATGGGTTGCGACAG-TAGGATCAGCAGCACACAGAAGGGGACCCGACCGATCCCTAGCTTAC
** * * * * *
16299742 GCATCATGCCCCTCTGGCTG-CTTGAGCGCCCGCACGCTCGTTTCCTGGGTTGACTTAGGCATAC
129 GCATCCCGCCCCTCTGGCCGAC-TGAGCGCCCGCACGCTCATTTCGTGGGCTAACTTAGGCATAC
* *
16299806 GGAGTTCATTCCCAGTCTAACCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGG
193 GGAGTTCATT--C--TC--AGCATAC-GAGTTTATTCCCAGTCTAAGATC-GACCGGACCGAGGG
* * * * **
16299871 TTGCGGTAGCACATGAT-GGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCATAGAGGTGCCAT
250 TTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCG-GG-G-CA-
** * * **
16299935 CGTCGGAGCATCACCGGAGAACCTGACCGACGG-CACTGGGGCACC-ATCG-TCGGAGCATCGTC
311 ---C----CATCGTCGGAGAACTTGA-CG--GGACATTGGGGTTCCGA-CGATCGG-G----G--
** * * * *
16299997 GGAGAACCTGATCGGCAGCATTAGGGT-T-C-CGACGATCGGGGGGGCAAGGGGGTG-TGTGCAC
358 GG-G--CC-G---GG--G-----GGGTGTGCAC-AC-AT--GATGTGCGA-TGGGTGCTG-GTAC
* ** ** * **
16300058 ATGATGTGCGATGGGTGCTGGTA-ATTTTCCCTTATATTAGCCC-CCT-ATGCCTCATCAAACCT
403 -T--TG-GC-------CCT--TATATTGGCCC-CCTA-T--CCCTCATCAAACCT----------
* * *
16300120 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCACTAAA
441 CGAGAACTCACACCCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* * *
16300185 GTGTCTGAAATGGGGACACTTTTTTAAAATGGTCAGAAAATCTTGTACACTTCAAGTTTTTAGCT
506 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* * * *
16300250 G-ATGTTTTTCGTGCATGCCAA-AAAAAGTACAAGGATCACGGCTACCTAGTTTGGGGACAAAAC
571 GAAT-TTTTTTGTGCATGCCAACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* *
16300313 TCCTTCCGAAAAAATTTTAAAAAATCTCGAACTGTCAAAAAGTTTCAAAAAT-AGTGAAAAATAG
634 TCCTTCC-AAAAAATTTTAAAAAATCCCGAACCG-CAAAAAGTTTCAAAAATCA-TGAAAAATAG
*
16300377 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAA
696 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
16300442 GCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
761 GCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * * *
16300507 AATCCACGGCTTGCGCATCCCGTCTCTTTGCCCGACGTAGTGCCCGCCCGCCC
826 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGACGTAGTGCCTGCCCGCCC
*
16300560 GCCCGCCTGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG-TCAGAC
1 G--C-CC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * ** * * ** * **
16300624 TGGACCGA-GGGTTGC-AGCAGCAAAAAT-GGCAGAATGCAGAGGGGGACCCGACCGATCCCCGG
62 CGAACC-ATGGGTTGCGA-CAG-TAGGATCAGCAGCACACAGAAGGGGACCCGACCGATCCCTAG
* * * * * * * **
16300686 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCTGCACGGTCGTTTCGTGAGTTGGCTTAGGC
124 CTTACGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGCTAACTTAGGC
* * * * *
16300751 ATATGGAGTTCATTCCCAGTCTAAGCATGCAGAGTTTATTCCCAGTCTAAGATCAGACCCGATCA
189 ATACGGAGTTCATT--C--TC--AGCATAC-GAGTTTATTCCCAGTCTAAGATC-GACCGGACCG
** ** *
16300816 AGGGTTGTGGCAGCACATGCTGGGCTTAGGCATGTGCTGGTGCCGCATTTTTCTTCACCGAGACA
246 AGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCG-G---
* * * * * *
16300881 CCATCGCCAGAGCATCGTCGGAGAACCTGACCGACGG-TATTGGGGTTCTGACGATC-GGAGGGC
307 -----GGC--ACCATCGTCGGAGAACTTGA-CG--GGACATTGGGGTTCCGACGATCGGGGGGGC
* * *
16300944 C-GGGGGGTGTGCGCACATGACGTGCGATGGGTGCTGGTACTTTGCCCTTATATT-GCCCCCTAT
362 CGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
16301007 CCCTCATCGAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
427 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGC
16301072 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
492 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* *
16301137 TTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTT
557 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* ** * * * *
16301202 TGGGGCCAAAAATGTTTTCGAAAAAATTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCA
622 TGGGGCCAAAACT-CCTTCCAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCA
* * *
16301267 TGAGAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGCAT
686 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * *
16301332 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTA
751 GAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTA
** * * * * * **
16301397 CCACCCTATCGATCCACGGCTTGCTTATCTCGTCTCTCTGGCCGGCGTACTGCCCGCCCATCC
816 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGACGTAGTGCCTGCCCGCCC
* * * * * *
16301460 GCCCGCTCGTTTCATCGGTGGGCTTAGGCATACAGACTTCATTCCCAGTCTAAGATCAAATCTG-
1 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CCGA
* * ** * * * ** *
16301524 ACTGA-GGGTTACGGTAGCAGGATCGGCAGCACACAG-AGAGGGACCCGATCGATCCCCGGCTTG
65 AC-CATGGGTTGCGACAGTAGGATCAGCAGCACACAGAAG-GGGACCCGACCGATCCCTAGCTTA
* * * * * * * *
16301587 CACATCCCGCCCCTTTGGCCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC
128 CGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGCTAACTTAGGCATAC
*
16301652 GGAG-------T-----T-C------ATTCCCAGTCTAAGATCCGACCGGATCGAGGGTTACGGC
193 GGAGTTCATTCTCAGCATACGAGTTTATTCCCAGTCTAAGAT-CGACCGGACCGAGGGTTACGGC
* * * * *
16301698 AGCACATGCTGGGATCGGGCGTGTGCTGGTGACGTATTTTTCCTCTCCGGGGCACCATCGTCGGA
257 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGTCGGA
* * * * *
16301763 GAACCTGACGGGCAGCATTGGGGTTCCGACGATCGGGGGAGCC-AGGTGGTGTGCGCACATGATG
322 GAACTTGACGGG-A-CATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCACACATGATG
* * *
16301827 TGCAAT-GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTTGAGAACTC
385 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
16301891 ACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
450 ACACCCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
16301956 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTT
515 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
16302021 TGTGCATGCCAAC-AAAATACAAGGATCACGTCTATCAAGTTTGGGGCCAAAACTCCATCCGAAA
580 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAA
* *
16302085 AAATTTTAAGAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
644 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
16302150 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
709 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * **
16302215 AATTGGCTCACAGAAATATGAAGATGTGCCTAAACCC-CCTACCACCCTATCGATCCACGGCTTG
774 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
** * *
16302279 CGCATCCTATCTCCCTGGCCGACGTAGTGCCTGCCCGCCC
839 CGCATCCCGTCTCTCTGGCTGACGTAGTGCCTGCCCGCCC
**
16302319 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGAA
1 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAA
* * **
16302384 CCATGGGTTGCGGCAGTAGGATCGGCAGCATGCAGAAGGGGACCCGACCGATCCCTAGCTTACGC
66 CCATGGGTTGCGACAGTAGGATCAGCAGCACACAGAAGGGGACCCGACCGATCCCTAGCTTACGC
* *
16302449 ATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGA
131 ATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGCTAACTTAGGCATACGGA
*
16302514 GTTCATTCCCATTCTAAGCATACGAAGTTTATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTG
196 GTTCATT--C--TC--AGCATACG-AGTTTATTCCCAGTCTAAGATC-GACCGGACCGAGGGTTA
* * *
16302579 TGACAGCACATGCTGGGCTCGGGCATGTGCTAGTGCCGTATTTTTCTTCACCGGGGCACCATCGT
253 CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGT
* *
16302644 CGGAGAACTTGATCGGTGAAATTGGGGTTCCGACTATCGGGGGGGCCGGGGGGGCTGTGCACACA
318 CGGAGAACTTGA-CGG-GACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGG-TGTGCACACA
* * * * * * *
16302709 TAATGCGTGATGGGTGCTGGTACTTGGCCATCATATTGGCGCCCTATCCCTCCTCAAACCTCGAG
380 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* *
16302774 AACTCACACCCCCATAAAGAACATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGT
445 AACTCACACCCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
*
16302839 CTGAAATGGGGACACTTCTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
510 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
*
16302904 TGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
575 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * *
16302969 CAAAAAAGTTTTAAAAAATCCCGAACCCCAAAAAGTTTCAAAAATCGTGAAAAACAGAAAACGAG
640 CAAAAAA-TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
* **
16303034 TTGTCTTGCCATGAAACTTCTTGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
704 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * * *
16303099 AATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACACTATTGATACAAG
769 AATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * *
16303164 GCTTGCGCAACCCGTCTCTCTGGCTGACGTAGTGCCTGGCCACCC
834 GCTTGCGCATCCCGTCTCTCTGGCTGACGTAGTGCCTGCCCGCCC
* * *
16303209 GCCCGCTCGTTTCGTCTGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGA
1 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAA
* * * *
16303274 CCGA-GGGTTGCGACAGTAGGATCAGCAGCACACAGAGGGGGACCTGGCCGAT-CCTCGGCTTAC
66 CC-ATGGGTTGCGACAGTAGGATCAGCAGCACACAGAAGGGGACCCGACCGATCCCT-AGCTTAC
* * * *
16303337 GCATCCCGCCCCTCTTGTCGGCTGAGTGCCCGCACGCTCATTTCGTGGGCTAACTTAGGCATACG
129 GCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGCTAACTTAGGCATACG
* *
16303402 GAGTTCATTCTCAG--T-C-----TA-----AG-AT-AG---GACCGAACCGAGGGTTACGGCAG
194 GAGTTCATTCTCAGCATACGAGTTTATTCCCAGTCTAAGATCGACCGGACCGAGGGTTACGGCAG
*
16303449 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGA
259 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGTCGGAGA
*
16303514 ACTTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGG-CGGGGGAGTGTGCACACATGATGTG
324 ACTTGA-CGG-GACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCACACATGATGTG
** *
16303578 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATTGAACCTCAAGAACTCAC
387 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
16303643 ACCCCGTTGAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
452 ACCCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
16303708 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTTCACTTCGAGGTTTTAGCTGTATTTTTTTG
517 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
*
16303773 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
582 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCAAAAA
* * ** * *
16303838 ATATTAAAAAATCACGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCGCCTT
646 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
16303903 GCCATGATACTTCACGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
711 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
16303968 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTGTCGATCCACGGCTTGCA
776 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
*
16304033 CATCCCGTCTCTCTGG-TCGATGTAGTGGCCGCTCGCCCGCCC
841 CATCCCGTCTCTCTGGCT-GACGTAGT-G-C-CT-GCCCGCCC
* * *
16304075 GCCTGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTATAAG
1 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
16304129 CATACGGAGT
Statistics
Matches: 8432, Mismatches: 1040, Indels: 732
0.83 0.10 0.07
Matches are distributed among these distances:
857 2 0.00
858 3 0.00
859 224 0.03
860 260 0.03
861 202 0.02
862 458 0.05
863 220 0.03
864 124 0.01
865 4 0.00
866 56 0.01
867 471 0.06
868 32 0.00
869 4 0.00
870 8 0.00
871 308 0.04
872 150 0.02
873 118 0.01
874 10 0.00
875 167 0.02
876 62 0.01
877 2 0.00
878 83 0.01
879 229 0.03
880 36 0.00
881 5 0.00
882 1 0.00
884 9 0.00
885 178 0.02
886 509 0.06
887 178 0.02
888 201 0.02
889 419 0.05
890 459 0.05
891 61 0.01
892 33 0.00
893 5 0.00
894 5 0.00
895 205 0.02
896 294 0.03
897 123 0.01
898 256 0.03
899 10 0.00
900 195 0.02
901 285 0.03
902 21 0.00
903 549 0.07
904 318 0.04
905 5 0.00
906 7 0.00
907 2 0.00
908 61 0.01
909 3 0.00
910 4 0.00
911 9 0.00
912 4 0.00
913 5 0.00
914 10 0.00
915 10 0.00
916 1 0.00
918 2 0.00
919 2 0.00
922 2 0.00
923 1 0.00
925 1 0.00
926 10 0.00
927 13 0.00
928 8 0.00
929 8 0.00
930 5 0.00
931 4 0.00
933 1 0.00
935 2 0.00
938 7 0.00
939 165 0.02
940 31 0.00
941 181 0.02
942 1 0.00
943 3 0.00
945 9 0.00
948 2 0.00
949 205 0.02
950 90 0.01
951 3 0.00
956 1 0.00
958 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (878 bp):
GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAA
CCATGGGTTGCGACAGTAGGATCAGCAGCACACAGAAGGGGACCCGACCGATCCCTAGCTTACGC
ATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGCTAACTTAGGCATACGGA
GTTCATTCTCAGCATACGAGTTTATTCCCAGTCTAAGATCGACCGGACCGAGGGTTACGGCAGCA
CATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGTCGGAGAAC
TTGACGGGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCACACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
CCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTT
AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
CGTCTCTCTGGCTGACGTAGTGCCTGCCCGCCC
Found at i:16304138 original size:26 final size:26
Alignment explanation
Indices: 16304102--16304154 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16304092 GTTGGCTTAG
16304102 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCATTCCCAGTATAA
*
16304128 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTATAA
16304154 G
1 G
16304155 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTATAA
Found at i:16305034 original size:26 final size:26
Alignment explanation
Indices: 16304997--16305049 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16304987 GTTGACTTAG
*
16304997 GCATACGGAGTTCA-TCTCCAGTCTAA
1 GCATACGAAGTTCATTC-CCAGTCTAA
16305023 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16305049 G
1 G
16305050 ATCAAATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16306340 original size:895 final size:891
Alignment explanation
Indices: 16304084--16308630 Score: 5912
Period size: 903 Copynumber: 5.1 Consensus size: 891
16304074 CGCCTGCTTG
* * *
16304084 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTATAAGCATACGGAGTTCATTCCCAG
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * *
16304149 TCTAAGATCAGACCAGACCGAGGG-T-AGCAGCACATGCTAGGCTCGAGCATGTGCTGGTGCCGC
66 TCTAAGATCAGACCAGACCGAGGGTTGCGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
* * *
16304212 ATTTTTCTTCATCGGGGCACCATCGCTGGAGCATCGCCGGAGAACTTGACCGACGGCATTGGGGT
131 ATTTTTCTTCGTCGGGGCACCATCGC-CGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGT
** * * * * *
16304277 TCCGGTGATCGGGGGGCCGAGGGGGTGTGCGCACAAGAAGTGCGATGGGTGCTAG-ACTTGGCCC
195 TCCGACGATCGGGGGGCCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* * * *
16304341 TTATATTGGCTCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCGTAAAGAGCATTTGAGA
260 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA-AACCCCTTAAAGAGCATTTGAGA
* * * * * *
16304406 TTTTAGAGGTTTGTTACCAGTAGCCATTAAAGTGTCTGAAATGAGGATACTTTTTGCAAATGGTC
324 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* *
16304471 ACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAATACAAT
389 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAAATACAAG
* ** *
16304536 GATCAAGTCTAGGAAGTTTGGGG-CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGT
453 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGT
* * *
16304600 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATCAAGG
518 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
*
16304665 CTTAAGGGACCATTGTATGAATTTACAAGGCATAAAAATGGCATTGGCATGTAGAAATATGAAGA
583 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGA
*
16304730 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCT-TCGGCCGGC
648 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT-GGCCGGC
* * * *
16304794 ATAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCAGTTGGCATAGGCATATGGAGTTCATTCCCAG
712 GTAGTG--C-CCCGCCCGCCCGCTCGTTTCGTCA-TTGGCTTAGGCATACGGAGTTCATTCCCAG
* * * * * * **
16304859 TCTATGATCGGACCAGACCGTGGGTTGTGGCAGCAGGATCGATAGCACAGAG-AGGGGAAATCGA
773 TCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGATCGATAGCACATAGAAGGGG-ACCCG-
*
16304923 TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAAGCTCA
836 TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCA
*
16304979 TTTCGTGGGTTGACTTAGGCATACGGAGTTCA-TCTCCAGTCTAAGCATACGAAGTTCATTCCCA
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC-CCAGTCTAAGCATACGGAGTTCATTCCCA
* * * * * * * *
16305043 GTCTAAGATCAAATCGGACCGAGGGTTGCGGCAGCACATGGTGGGCTTGGGGATGTGCTGGGGCT
65 GTCTAAGATCAGACCAGACCGAGGGTTGC-GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
** * * * *
16305108 GCATTTTTCTTCACCGGGGCACCATCACCAGAGCATCACCGGAGAACCTGACCGATGGCATTAGA
129 GCATTTTTCTTCGTCGGGGCACCATCGCC-GAGCATCGCCGGAGAACCTGACCGACGGCATT-GG
* * * *
16305173 GTTTCCGACGATCGGGGGGGCTGGGTGGGGTGTGTCCACACATGATGTGCGATGGGTACTGGTAT
192 GGTTCCGACGATC-GGGGGGCCGGG-GGGGTGTG--CACACATGATGTGCGATGGGTGCTGGTAC
* * *
16305238 TTGGCCCTTATATTGGCCCCCTTTCCCTCATCAAACCTCAAGAACTCACACCCCTTAAAGAGCAT
253 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAAACCCCTTAAAGAGCAT
* *
16305303 TTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGAGTCTGAAATGGGGACACTTTTTTCAA
318 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
16305368 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAT
383 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAT
* *
16305433 AAAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCCGAAAAAA-TTTAAAAAATCCTGA
448 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGA
* *
16305497 ACCTTAAAAAGTTTCCAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
513 ACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* * *
16305562 GAAGGCTTAAGGGACCATTGTACGAATTTACAAGCTATAAAAATGGCATTGGCACGTAGAAATAT
578 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATAT
* *
16305627 GAAGATGTGCCTAAACCCACCTACCACCCTAT-GATCCATGGCATGCGCATCCCGTCTC-CTTGG
643 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC-TGG
** * *
16305690 CCGGCGTAGTGCCCCGCCCGCCCATTCGTTTCATCGATTGGCTTAGGCATACGAAGTTCATTCCC
707 CCGGCGTAGTGCCCCGCCCGCCCGCTCGTTTCGTC-ATTGGCTTAGGCATACGGAGTTCATTCCC
* * * * *
16305755 AGTCTAAGATCAGATCGGACTTAGGGTTGTTGTAGCAGGATCGACAGCACATAGAAGGGGACCCA
771 AGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGATCGATAGCACATAGAAGGGGACCC-
* * * * * ** *
16305820 GTCGATCCCCGACTTGCGCATCCTGCCCTTCTAGCTGGCTGAGCGCTTGCACGCTCG
835 GTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCA
* * *
16305877 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCCAAGCGTACGGAGTTCATTCCCAG
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * *
16305942 TCTAAGATCGGACCAGACCGAGGGTTGCGATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCA
66 TCTAAGATCAGACCAGACCGAGGGTTGCG-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * *
16306007 CATTTTTCTTCGTCGGGGCACCA-CTGTCCGAGCATCACCGGAGAACCTGACTGGCGGCATTGGG
130 CATTTTTCTTCGTCGGGGCACCATC-G-CCGAGCATCGCCGGAGAACCTGACCGACGGCATTGGG
* * *
16306071 GTTCCGACGATCGGAGGGGCCGAGGGGGGTGCGCGCACATGATATGCGATGGGTGCTGGTACTTG
193 GTTCCGACGATCGG-GGGGCCG-GGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTG
*
16306136 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAAACCCCTTAAAGAGCATTTG
256 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAAACCCCTTAAAGAGCATTTG
16306201 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
321 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* * * *
16306266 GTCAGAAAAAT-TTGTACAGTTCGAGTGTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATAC
386 GTCA-CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAC
* *
16306330 AAGGATCACGTCTGCCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAAT-CTCGAA
450 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCT-GAA
* ** * *
16306394 TCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTAACGTG
514 CCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
*
16306459 AAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATG
579 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATG
* *
16306524 AAGATGTGCCTAAACCCACCGACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTC
644 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * * **
16306589 GGCATAGTGCCCACCCGCCCACCCGCCCG-CCCGCTCATTTTGGCTTAGGCATACGGAGTTCATT
709 GGCGTAGTG--C-CCCGCCCGCCCGCTCGTTTCG-TCA--TTGGCTTAGGCATACGGAGTTCATT
* * * * ** ** *
16306653 CCCAGTCTAAGATTAGACCGAACCGAGGGTTGTGGTAGCAGGATCGGCAGCATGTAGAGGGGGAC
768 CCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGATCGATAGCACATAGAAGGGGAC
* * * * * *
16306718 CCGATTGATCCTCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCACCCGTACGCTCG
833 CCG-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCA
* ** *
16306778 TTTAGTGGGTTGACTTAGAAATACGGAGTTCATTCCCAGTCTAAG-GT--GG-G---------A-
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * *
16306829 -C-----T--G----GACCGAGGGTTGTGGCAGCACATGCTAGGCTCAGGCATGTGCTGGTGTCG
66 TCTAAGATCAGACCAGACCGAGGGTTG-CGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
16306882 CATTTTTCTTCGTCGGGGCACCATCGCCTGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGG
130 CATTTTTCTTCGTCGGGGCACCATCGCC-GAGCATCGCCGGAGAACCTGACCGACGGCATTGGGG
* * * ** *
16306947 TTCAGGCGATCGGGGGGCCGGGGGGGAG-GCACACATGATGTATGATGGGTGCTGGTACATGGCC
194 TTCCGACGATCGGGGGGCCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCC
* *
16307011 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCATAAAGAGCATTTGAG
259 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA-AACCCCTTAAAGAGCATTTGAG
* *
16307076 ATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGT
323 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* * *
16307141 CACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTCTTTTGTGCATGCCAACAAAAATACAAG
388 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAG
* ** * * *
16307206 GATCACGTATACCAAGTTTGAAGCCAAAACCCCTTCTGAAAAAATTTTAAAAAATCCTGAACCGC
453 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGT
16307271 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
518 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
**
16307336 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGA
583 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGA
* *
16307401 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCAGCG
648 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
* * * * * **
16307466 TAGTGCCCGCCCTCCTACCCGTTCGTTCGTTTCGTCGGTTGGCTTAGGCCTATGGAGTTCATTAA
713 TAGTGCCC-CGC-CC-GCCCG--C--TCGTTTCGTC-ATTGGCTTAGGCATACGGAGTTCATTCC
* * * * *
16307531 CAGTCTAAGATCAGACTGGACTAAGGGTTGTGGCAGTTA-GATCGATAGGACATAGAGGGGGACC
770 CAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAG-CAGGATCGATAGCACATAGAAGGGGACC
* * * * * * *
16307595 TGACTGATCCCCAGCTTGCACATCCCACCCCTCTGGCAGGCTAAGCGCCCGCACGCTCA
834 CGTC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCA
* * * *
16307654 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGAAGTTCATTCCTAA
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * * * *
16307719 TCTAAGATCAGATCAGACCAAGGGTTGTTGCAGCACATGCTGGCCTGGGGCATGTGTTGGTGCCG
66 TCTAAGATCAGACCAGACCGAGGGTTG-CGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * * * * * * * * **
16307784 CATTTTTCTTCGCCAGGGCACCATCGTCGGAGCATTGTCTGAGAACCTAACCGGCGGTATTGGCA
130 CATTTTTCTTCGTCGGGGCACCATCG-CCGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGG
* * *
16307849 TTTC-AGCGATCGGGGATGCC-GGGGGGTGTGCACACATGATGTGTGATGGGTGCTGGTACTTGG
194 TTCCGA-CGATCGGGG-GGCCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGG
* * * *
16307912 ACCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCTTTTAAAGAGCATTTG
257 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAAACCC-CTTAAAGAGCATTTG
* *
16307977 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAGGTGTCTAAAATGGGGACACTTTTTTCAAATG
321 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* * * * *
16308042 GTCACAAAATCTTGTACAGTTTGAGTTTCTAGCTGAATTTTTTTGTGGATACCAAAAAAAATACA
386 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACA
* * * *
16308107 AGGATCAGGTCTACCAATTTTGGGGCCAAAAGTCCTTCCAAAAAAATTTTAAAAAATCCTGAACC
451 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACC
* *
16308172 GTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCTTGAAACTTCACGTGAA
516 GTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
*
16308237 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCATGTAGAAATATGAA
581 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAA
* * *
16308302 GATGTACCTAAACCCACCTACCAACCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGG
646 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* * *
16308367 TGTAGTG-CCCGCCCGCCCGCTCGTTTCGTCAGCTGGCTTAGGCATACAGAGTTCATTCCCAGTC
711 CGTAGTGCCCCGCCCGCCCGCTCGTTTCGTCA-TTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * * *
16308431 TAAGATCAGACCAGA-TCGAGGGTTGTGACAGCAGGATCGGTAGCAC-TCAGAAGGGGACTCGGT
775 TAAGATCAGACCGGACT-GAGGGTTGTGGCAGCAGGATCGATAGCACAT-AGAAGGGGAC-CCGT
* * * * * * *
16308494 CAATCCCCGGCTTGCACGTCCCGCCCCTTTGGTCGGCTAAGCGACCGCACGCTCA
837 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCA
* *
16308549 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTTAAGCATATGGAGTTCATTCCCAG
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
**
16308614 TCTAAGATTGGACCAGA
66 TCTAAGATCAGACCAGA
16308631 TCAAGAGTTC
Statistics
Matches: 3187, Mismatches: 377, Indels: 176
0.85 0.10 0.05
Matches are distributed among these distances:
870 2 0.00
871 3 0.00
872 79 0.02
873 391 0.12
874 11 0.00
875 111 0.03
876 161 0.05
877 6 0.00
878 2 0.00
879 2 0.00
880 1 0.00
881 1 0.00
886 1 0.00
888 1 0.00
889 1 0.00
891 1 0.00
894 5 0.00
895 529 0.17
896 175 0.05
897 66 0.02
898 385 0.12
899 30 0.01
900 28 0.01
901 212 0.07
902 314 0.10
903 624 0.20
904 45 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (891 bp):
TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
TCTAAGATCAGACCAGACCGAGGGTTGCGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
ATTTTTCTTCGTCGGGGCACCATCGCCGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTT
CCGACGATCGGGGGGCCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAAACCCCTTAAAGAGCATTTGAGATT
TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGAT
CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAA
AAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGT
GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
TGCCCCGCCCGCCCGCTCGTTTCGTCATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
CAGACCGGACTGAGGGTTGTGGCAGCAGGATCGATAGCACATAGAAGGGGACCCGTCGATCCCCG
GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCA
Found at i:16307709 original size:26 final size:26
Alignment explanation
Indices: 16307672--16307724 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16307662 GTTGACTTAG
* *
16307672 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAATCTAA
16307698 GCATACGAAGTTCATTCCTAATCTAA
1 GCATACGAAGTTCATTCCTAATCTAA
16307724 G
1 G
16307725 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAATCTAA
Found at i:16308603 original size:26 final size:26
Alignment explanation
Indices: 16308567--16308619 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16308557 GTTGACTTAG
*
16308567 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16308593 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16308619 G
1 G
16308620 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16310157 original size:26 final size:26
Alignment explanation
Indices: 16310121--16310173 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16310111 GTTTACTTAG
16310121 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16310147 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16310173 G
1 G
16310174 ATCGGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16311060 original size:26 final size:26
Alignment explanation
Indices: 16311024--16311074 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
16311014 GTTGACTTAG
*
16311024 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
16311050 GCATACGGAGTTCATTCCCAATCTA
1 GCATACGGAGTTCATTCCCAATCTA
16311075 TGATCGGACT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:16311318 original size:903 final size:897
Alignment explanation
Indices: 16309256--16315492 Score: 7655
Period size: 898 Copynumber: 7.0 Consensus size: 897
16309246 GTTGGCTTAG
* * * * * *
16309256 GCATACGAAGTTTAATCCCAGTCAAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCT---
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCACATGCTGGG
* * *
16309318 -TGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCAGGGCACCATCGTCGGAGCATCG-CTGGAGA
66 CTCGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGCACCATCGCCGGAGCATCGTC-GGAGA
* * * **
16309381 ACCTGACCGACGGCATTAGGGTTTCGGCAATCTGGGGGGCCTGGGGCGGGTGTAAGCACATGATG
129 ACCTGACCGACGGCATTGGGGTTCCGGCGATC-GGGGGGCC-GGGG-GGGTGTGCGCACATGATG
* *
16309446 TGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATGCCTCATCAAACCTCGAGAACTC
191 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
16309511 ACATCCCCTTAAAGAGCCTTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
256 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
16309576 ATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATCTTTT
321 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTT
* * * *
16309641 TGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAATTCCTTCCGAAA
385 TTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CTAAA
* * * * * * *
16309706 AAATTTTAAAAACTCTCGAATCGCAAAAAGTTTCAAAAATTGTGAAAAATAAAAAAGGAGTCGTC
449 AAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
16309771 TTGCCATGAAACTCCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
514 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
16309836 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTG
579 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
16309901 CGCATCTCGTCTACT-TGGCCGGCGTAGTGCCCG--CCCGCCCGCCCGCTCGTTTTGTCGGTTGG
644 CGCATCCCGTCT-CTCTGGCCGGCGTAGTGCCCGCCCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * * *
16309963 CTTAGGCATACGGAGTTCATTCACAGTCTAAGATC-GAACCAGAC----CG-TGCAACAGCAAGA
708 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ATCAGACTGAGGGTTGCGACAGCAGGA
* * * ** * * *
16310022 TCGGCAGCATGCAGAGGGGGA-CCAGTCGATCCCCGTTTTACGCATCCCGCCCCTCTGGTCGACT
772 TCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * *
16310086 GAGCACCCGCACGCTCGTTTCGTGAGTTTACTTAGGCATACGGAGTTCATTCCCAGTCTAA
837 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
16310147 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGCGGTAGCACATGCCGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCACATGCTGGG
* *
16310212 CTCGGACAGGTGCTGGTGCCGCATTTTTCTTCGTCGAGACACCATCGCCGGAGCATCGTCGGAGA
66 CTCGG-CATGTGCTGGTGCCGCATTTTTCTTCGTCG-GGCACCATCGCCGGAGCATCGTCGGAGA
** * *
16310277 ACCTGACCGGTGGCATTGGGGTTCTGGCGATCGGGGGGGCCAGGAGGGGGTGTGCGCACATGTTG
129 ACCTGACCGACGGCATTGGGGTTCCGGCGATC-GGGGGGCC-GG-GGGGGTGTGCGCACATGATG
* * * * * * *
16310342 TGCGATGGTTGCTGGTTCTTAGCCCTTATATTGGCCCCCTATGCCTCATCGAA-CTTGAGAAATC
191 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
16310406 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAA
256 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
16310471 ATGGGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTGGAGTTTTTAGCTGAATTTTTT
321 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * * *
16310536 TTGCACGCGAACAAAAATACAAGGATTATGTCTTCCAAGTTTGGGGCTAAAACTCCTTCTAAAAA
386 TTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAAA
* * ** * *
16310601 ATTTTAAAAAATCTCAAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGGGTCGTCTT
451 ATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
** *
16310666 GCTGTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCAATAAAAATGGCA
516 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** *
16310731 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCACGGCTTGCG
581 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
16310796 CATCCCATCTCTCTGGCCGGCGTAGTGCCCGCACTCCCGCCCGCCCGCTCGTTTTGTCAGTTGGC
646 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC-C-CCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * *
16310861 TTAGGCATACGGAGTTCATTCCCAATCTAAGGTCAAATCAGACTGAGGGTTGCGACAGCAGGATC
709 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACTGAGGGTTGCGACAGCAGGATC
** * * *
16310926 AACAACACGCAGAGGGGGACCTGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGA
774 GGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
*
16310991 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
839 GCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
16311050 GCATACGGAGTTCATTCCCAATCTATGATCGGACTGGACCGAGGGTTGCAGCAACACATGCTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCACATGCT-GG
* * *
16311115 GCT-GAGAATGTGCTGGTGCCACATTTTTCTTCGTCGGCGCACCATCGTCGGAGCATCGTCGGAG
65 GCTCG-GCATGTGCTGGTGCCGCATTTTTCTTCGTCGG-GCACCATCGCCGGAGCATCGTCGGAG
* * * *
16311179 AACCTGACCGACGGTATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGATTTTGTGCACATGATGT
128 AACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGG-GTGTGCGCACATGATGT
* * * *
16311244 ACGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACTTGGAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
16311309 CACCCCCCTTAAAGAGCATTTGAGATTTGACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
257 CA-CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
16311374 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTT
321 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
16311439 TGTGCATGCCAGA-AAAGATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCTGAA
386 T-TGCATGCCA-ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-AA
* * *
16311503 AAAATTTTAAAAAAATCCCAAACCACAAAAAGTTTCAAAAATAGTGAAAAAAAGAAAACGAGTCG
448 AAAATTTT-AAAAAATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
*
16311568 TCTTGCCATGAAACTTCACGTGCAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
512 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
16311633 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCT
577 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * *
16311698 TGCACAT-CTGTCTCTCTGGCCGGCATAGTGCTCG--CCCACCCGCCCGCTCGTTTCGTCGGTTG
642 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * ** * * *
16311760 GCTTAGGCATACGGAGTTCATTCCCAGTCTAGGATCAGATCGGACCAAGGGTTGGGGCAGCAAGA
707 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACTGAGGGTTGCGACAGCAGGA
* * * * * *
16311825 TCGGCAGCACGCAGAGGGGGACCCGACTGATCCCTGACTTTCGCATCCCGCCCCTCTGGCCGGTT
772 TCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
16311890 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
837 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * * *
16311951 GCAAACGAAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGTGTTGTGGCAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
16312016 CTCGGCCATGTGCTGGTGCTGCATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATCGCCGAAGA
66 CTCGG-CATGTGCTGGTGCCGCATTTTTCTTCGTCG-GGCACCATCGCCGGAGCATCGTCGGAGA
* * * * * * * *
16312081 ACTTGACCGTCGGCATTGGGGTTCCGACGATCGAGGGAGTCGGAGGGGTGTGCACAAATGATGTG
129 ACCTGACCGACGGCATTGGGGTTCCGGCGATCG-GGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * * * * *
16312146 CGAAGGGGGCTGGTACTTGGTCGTTATATTGG-CCCCTATCCCTCATCAAACCTTGAGAACTTAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
16312210 ACCCCCTTAAAGAGCATTTGAGAATTTACAGGTTTGCTGCCAGTAG-CTTTAAAGTGCCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
16312274 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-
* * *
16312339 TGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAAG-TTGGGGCCAAAACTCTTTCTGAAAA
387 TGCATGCCAACAAAAATACAAGGATCACGTCTACC-AAGTTTGGGGCCAAAACTCCTTCT-AAAA
*
16312403 AATTTTAAAAAATCCCGAA-CAGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTC
450 AATTTTAAAAAATCCCGAACCA-CAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
16312467 TTGCCATGAAACTTCACGTGAAGGCTT-AGAAGACCATTGTATGAATTTACAAGCCATAAAAATG
514 TTGCCATGAAACTTCACGTGAAGGCTTAAG-GGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
16312531 GCATTGGCACGCAGAAATATTAAGTTGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
578 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * * * *
16312596 GCGCATCCCATCTCTCTGGCTGACGTAGTGCTCG--CCCGCCCGCCTGTTCGTTTCATCAGTTGG
643 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
** * * * *
16312659 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGAT-TGAATCGAGGGTTGTGCCAGCAGGA
708 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACT-GAGGGTTGCGACAGCAGGA
* * * * * **
16312723 TCGGCAGCACGCAAAGGGTGACCCAGCTGATCCCCAGCTTGCAAATCCCGCCCCTCT-GCCGGCT
772 TCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * *
16312787 GAGCGTCCGCATGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
837 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * ** *
16312848 GCATACGAAGTTCATTCCCAGTCAAAGATCGAACCGAATCGAGGGTTGTAGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCACATGCTGGG
* * ** ** *
16312913 CTCGGGCATGTGTTGGTACCTTATTTTTCTTCCCCGGGGCACCATCGCCGGAGCATCGTAGGAGA
66 CTC-GGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGCACCATCGCCGGAGCATCGTCGGAGA
** * * * * *
16312978 ACCTGACCGACGGCATTAAGGTTTCGGTGATCGGGGGGGTC-GGGGAGTGTGCGCACATAATGTG
129 ACCTGACCGACGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * *
16313042 GGATGGGTGCTGGTACATGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
16313107 ACCCCCTTAAATAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
16313172 TGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-
** * * * *
16313237 TGCCGGCTAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCTTTCCAAAAAG
387 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAAA-
* * *
16313302 ATTTTAAAAAATCCCGAACC-CTAAAAAGTTTCAAAAATCGTGAATAATAGAAAACGAGTCCTTT
451 ATTTTAAAAAATCCCGAACCAC-AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * * *
16313366 TGCTATGAAACTTCACATGAAGGCTTAAGTGACCATTGTATGAATTTACAAGCCATAAAAAAGGC
515 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * ** *
16313431 ATTGTCACGTAGAAATATGAAGACATGCCTAAATCCACCTACCACCCTATCGATCCACGGCTTGC
580 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
16313496 GCATCCTGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGCTCGCTCGTTTCATCGGTTGG
645 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CC-CCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * * * * *
16313561 CTTAGGCATACAGAGTCCATTCCCAGTCTAATATCAGATCAAACTAAGGGTTGTGGCAGCAGGAT
708 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACTGAGGGTTGCGACAGCAGGAT
* * * * *
16313626 TGGCAGCACACAGAAGGGGACCCGGTCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGCCGGCTG
773 CGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
*
16313691 AGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
838 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
**
16313751 GCATACGGAGTTCATTCCCAATCTAAGATCAAACCGGATCGAGGGTTGCGGCCA-CACATGCTGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGATCGAGGGTTGCGG-CAGCACATGCTGG
* * * * *
16313815 GCTCGAGCATGTGTTGGTGCCGCATTTTTCTTCATCAGGGCACCATCGCCAGAGCATTGCCGGAG
65 GCTCG-GCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGCACCATCGCCGGAGCATCGTCGGAG
** * *
16313880 AACCTGACCGACGGCATTGAAGTTCCAGCGATCGGGGGGGCCGGGGGGGTGTGCACACATGATGT
128 AACCTGACCGACGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGT
* *
16313945 GCGATGGCTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
16314010 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
16314075 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTT
* * * * *
16314140 TTGCACGCCAACAAAAATATAAGGATCATGTCTACCAAGTTTGGGGCCAGAACTCCTTCCGAAAA
386 TTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CTAAAA
* * * * *
16314205 AATTTTAAAAAATGCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCT
450 AATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
16314270 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
515 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
16314335 ATTGGCACTCAGAAATATAAAGATGCGCCTAAACCAACCTACCACCCTATAGATCCACGGCTTGC
580 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * *
16314400 ACTTCCCGTCTCTCTGGTCGGTGTAGT----G----C-CTC-CCCGCTCGTTTCGTCAGTTGGCT
645 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * ** *
16314455 TAGGCATATGGAGTTCATTCCCAGTTTAAGAT-AGGATTGGACTGAGGGTTAC-AGCAGCAGGAT
710 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-GATCAGACTGAGGGTTGCGA-CAGCAGGAT
* ** * * * * * * * * * *
16314518 TGATAGCAGGTAGAGGGGGACCCTGCCAATCCTCGACTTGTGCATCCCACCCCGCTGGCCGACTG
773 CGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * *
16314583 AGCGCACGCACGATCGTTTCGTGGGTTGACTTAGACATACGGAGTTCA-T-----TC---
838 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
16314634 -C--A---AG-----------TCTAAGATCGGACTGGATCGAAGGTTACAGAAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCACATGCTGGG
* * * ** ** *
16314682 CTCGGGCATGTGCTGCTACAGCATTTTTCTTCACCAGGGCACCATCGCTAGAGCATCATCGGAGA
66 CTC-GGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGCACCATCGCCGGAGCATCGTCGGAGA
* * * *
16314747 ACTTGACAGACGGCATTGGGGTTCCGACGATTGGGGGTGCCGGGGGGGTGTGCGCACATGATGTG
129 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGG-GCCGGGGGGGTGTGCGCACATGATGTG
* * *
16314812 CGATTGGTGCTGGTACTTAGCCCTTGTATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * * * *
16314877 ACCCCCTCAAAGATCATTTGAGATTTTATAGGTTTGCTACCAGTACCCATTAAAGTGCCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
16314942 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTT
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTT
* *
16315007 GGCATGCCAACAAAAATACAAGGATCACG--TACCAAGTTTTGGGGCCAAAGC-CCTTCCAAAAA
388 -GCATGCCAACAAAAATACAAGGATCACGTCTACCAAG-TTTGGGGCCAAAACTCCTT-CTAAAA
* *
16315069 AATTTTAAAAAAT-CCAAATTCCA-AAAAAGTTTCAAAAAT-GTG-AAAATAGAAAACGAGTCAT
450 AATTTTAAAAAATCCCGAA--CCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
*
16315130 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAACCATTGTATGAATTTAC-AGCCATAAAAGT
513 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGG-ACCATTGTATGAATTTACAAGCCATAAAAAT
* *
16315194 GGCATTGGCACGCA-AAATAT--AGATGTGCCTAAA-CCACTTA-CA--CTACTCGATCCACAGC
577 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA-TCGATCCACGGC
* * * * *
16315252 TTGCGCATCCCGTCTCTTTGGCCGGCGTAAGTG-CCGCCTGACCGCCAGCTACAG-TCTTTTCGT
641 TTGCGCATCCCGTCTCTCTGGCCGGCGT-AGTGCCCGCC--CCCGCCCGC--CCGCTCGTTTCGT
* ** *
16315315 CGGTTGGCTTA-GCATACGTGAGTTCATTCCCAGT-TAAGATC-G----GGC-GA-GGTTTAG-T
701 CGGTTGGCTTAGGCATACG-GAGTTCATTCCCAGTCTAAGATCAGATCAGACTGAGGGTTGCGAC
* *
16315370 AGCAGGATCGGCAG--C-TAGA-GGGGA-CC-GCCGATCCTCGGCTTGCGCAT-CC-CCCCTCTG
765 AGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
*
16315427 GCC-GCTGAGCG-CCGC-CAGCTC-TTTCA--GG--G-CTTAGGCATACGGAGTTCATTCCCTGT
830 GCCGGCTGAGCGCCCGCAC-GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
16315483 CTAA
894 CTAA
16315487 GCATAC
1 GCATAC
16315493 AATCGATCCC
Statistics
Matches: 4670, Mismatches: 572, Indels: 242
0.85 0.10 0.04
Matches are distributed among these distances:
844 18 0.00
845 2 0.00
847 2 0.00
849 5 0.00
850 8 0.00
851 7 0.00
852 10 0.00
853 2 0.00
854 19 0.00
855 5 0.00
856 39 0.01
857 9 0.00
858 5 0.00
859 12 0.00
860 12 0.00
861 10 0.00
862 78 0.02
863 25 0.01
864 46 0.01
865 28 0.01
866 339 0.07
867 3 0.00
868 13 0.00
869 33 0.01
870 2 0.00
877 2 0.00
880 1 0.00
882 1 0.00
886 2 0.00
891 56 0.01
892 162 0.03
893 210 0.04
894 55 0.01
895 131 0.03
896 198 0.04
897 528 0.11
898 614 0.13
899 49 0.01
900 41 0.01
901 429 0.09
902 180 0.04
903 558 0.12
904 497 0.11
905 48 0.01
906 176 0.04
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (897 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGCACCATCGCCGGAGCATCGTCGGAGAAC
CTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTGCA
TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAAAATTTT
AAAAAATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
CGTCTCTCTGGCCGGCGTAGTGCCCGCCCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
TACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACTGAGGGTTGCGACAGCAGGATCGGCAGCA
CGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:16313755 original size:26 final size:26
Alignment explanation
Indices: 16313725--16313777 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16313715 GTTGACTTAG
*
16313725 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
16313751 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
16313777 G
1 G
16313778 ATCAAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:16316904 original size:711 final size:714
Alignment explanation
Indices: 16315537--16317035 Score: 2269
Period size: 711 Copynumber: 2.1 Consensus size: 714
16315527 GCCGGCTGAG
* ** * *
16315537 CGCCCGCACGCTT-GTTTCGTGGGTTGACTTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGG
1 CGCCCGCCCGCTTCGTTTCGT-CATTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGG
* * * * * * * * * *
16315601 GCCGGA-GAGGGTTGCGGCAGAACAAGCTGGGCTTGGGCTTGTGCTGGTGCCGTATGTTTCTTTG
65 ACCAGACGAGGGTTACGGAAGAACAAGCTGGGCTTCGGATTGTGCTGCTGCAGCATGTTTCTTCG
**
16315665 CCAGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCAGCGGCATTGGGGTTCCGACGATCG
130 CCAGGGCACCATCCCCGGAGCATCGCCGGAGAACCTGACCAGCGGCATTGGGGTTCCGACGATCG
* * *
16315730 GGGGGGCCGGGGGGGTGTGTGGGCACATAATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTG
195 GGGGGGCCGGGGGGGTGTGTGCGCACATAATGTGCGATGGGTGCTCGTACTTGGCCCTTATATTG
* *
16315795 GCCCCCTATTCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTCAGATTTTACAG
260 GCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTCAAAGAGCATTTCAGATTTTACAG
* * *
16315860 GTTTGCTGCCAGTAGCCATTAAAGTGCCTGAAATGGGGACACTTTTTTCAAATGGTCTCAAAATC
325 GTTTGCTGCCAGTACCCATTAAAGTGCCAGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
16315925 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTC
390 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTC
* * * * **
16315990 ACCAAGTTTGGGGCCAAAACTGCTTTCGAAAAATTTTAAAAAATGCCAAACCGCAAAAAGTTTTG
455 ACCAAGTTTGGGGCCAAAACTGCTTCCAAAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTCA
* *
16316055 AAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
520 AAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
16316120 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
585 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
* * *
16316185 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTATGGCCGCCGTAATGCCCGCC
650 CCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTATGGCCGACGTAATGCCCGCA
* *
16316250 CGCCCGCCCGCTTCGTTTCGTCTTTGGCTTAGGCATAC-GAGTTCATTCCAAGTCTAAGATCGGA
1 CGCCCGCCCGCTTCGTTTCGTCATTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGA
* * * * *
16316314 CCAGACGAGGGTTATGGAAGCACATGTTGGGC-TCGGATATGTGCTGCTGCAGCATTTTTCTTCG
66 CCAGACGAGGGTTACGGAAGAACAAGCTGGGCTTCGGAT-TGTGCTGCTGCAGCATGTTTCTTCG
* *
16316378 CCAGGGCACCATCCCCGGAGCATCGTCGGAGAACCTGA-CAGTCGGCATTGGGGTTCCGACGATT
130 CCAGGGCACCATCCCCGGAGCATCGCCGGAGAACCTGACCAG-CGGCATTGGGGTTCCGACGATC
* *
16316442 GGGGGTGCC-GGGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTCGTACTTGGCCCTTATATT
194 GGGGGGGCCGGGGGGGTGTGTGCGCACATAATGTGCGATGGGTGCTCGTACTTGGCCCTTATATT
* * * *
16316505 -GCCCCCTATCCCTCATCAAACCTCGAGAGCTCACACCCCCTCAAAGATCATTTGAGATTTTACA
259 GGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTCAAAGAGCATTTCAGATTTTACA
16316569 GGTTTGCTGCCAGTACCCATTAAAGTGCCAGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
324 GGTTTGCTGCCAGTACCCATTAAAGTGCCAGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * *
16316634 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCATGT
389 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGT
* *
16316699 CACCAGGTTTGGGGCCAAAGC-GCGTTCCAAAAAAATTTTAAAAAATCCCAAACCACAAAAAGTT
454 CACCAAGTTTGGGGCCAAAACTGC-TTCC-AAAAAATTTTAAAAAATCCCAAACCACAAAAAGTT
16316763 TCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
517 TCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* *
16316828 ACCATTGTATGAATTTATAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCTTA
582 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
* * *
16316893 AACCTACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC
647 AACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTATGGCCGACGTAATGCCC
16316958 GCA
712 GCA
* *
16316961 CGCCCGCCCGCCTACTCGTTTCATCAATTGGCTTTGGCATACGGAGTTCATTCCTAGTCTAAGAT
1 CGCCCGCCCG-CT--TCGTTTCGTC-ATTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGAT
* *
16317026 CAGATCAGAC
62 CGGACCAGAC
16317036 CAGACCAAGG
Statistics
Matches: 709, Mismatches: 66, Indels: 19
0.89 0.08 0.02
Matches are distributed among these distances:
709 2 0.00
710 204 0.29
711 272 0.38
712 43 0.06
713 129 0.18
714 16 0.02
715 14 0.02
716 29 0.04
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (714 bp):
CGCCCGCCCGCTTCGTTTCGTCATTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGA
CCAGACGAGGGTTACGGAAGAACAAGCTGGGCTTCGGATTGTGCTGCTGCAGCATGTTTCTTCGC
CAGGGCACCATCCCCGGAGCATCGCCGGAGAACCTGACCAGCGGCATTGGGGTTCCGACGATCGG
GGGGGCCGGGGGGGTGTGTGCGCACATAATGTGCGATGGGTGCTCGTACTTGGCCCTTATATTGG
CCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTCAAAGAGCATTTCAGATTTTACAGG
TTTGCTGCCAGTACCCATTAAAGTGCCAGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
TGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCA
CCAAGTTTGGGGCCAAAACTGCTTCCAAAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTCAA
AAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
CACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTATGGCCGACGTAATGCCCGCA
Done.