Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 88 of 195
Found at i:16483869 original size:20 final size:20
Alignment explanation
Indices: 16483844--16483883 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
16483834 TTCGGTGAAC
16483844 TTTCGGCGAAAAAACCCAGA
1 TTTCGGCGAAAAAACCCAGA
* *
16483864 TTTCGGTGACAAAACCCAGA
1 TTTCGGCGAAAAAACCCAGA
16483884 ATCCGGTGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.38, C:0.25, G:0.20, T:0.17
Consensus pattern (20 bp):
TTTCGGCGAAAAAACCCAGA
Found at i:16483890 original size:20 final size:20
Alignment explanation
Indices: 16483854--16483892 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
16483844 TTTCGGCGAA
* *
16483854 AAAACCCAGATTTCGGTGAC
1 AAAACCCAGAATCCGGTGAC
16483874 AAAACCCAGAATCCGGTGA
1 AAAACCCAGAATCCGGTGA
16483893 ATCCCGCCCC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.26, G:0.21, T:0.15
Consensus pattern (20 bp):
AAAACCCAGAATCCGGTGAC
Found at i:16483979 original size:26 final size:26
Alignment explanation
Indices: 16483949--16484001 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16483939 GTTGACTTAG
*
16483949 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
16483975 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
16484001 G
1 G
16484002 ATCGGACAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:16484876 original size:26 final size:26
Alignment explanation
Indices: 16484839--16484891 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16484829 GTTGACTTAG
16484839 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
16484865 GCATACGTAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
16484891 G
1 G
16484892 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:16485719 original size:26 final size:26
Alignment explanation
Indices: 16485690--16485740 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16485680 TGACTTAGGT
* *
16485690 ATACGGAGTTTATTCCTAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
16485716 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
16485741 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:16486608 original size:25 final size:26
Alignment explanation
Indices: 16486570--16486621 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
16486560 GTTGACTTAG
*
16486570 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
16486596 GCATAC-GAGTTCATTCCTAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
16486621 G
1 G
16486622 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 18 0.75
26 6 0.25
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:16488518 original size:865 final size:870
Alignment explanation
Indices: 16483893--16496027 Score: 10648
Period size: 907 Copynumber: 13.9 Consensus size: 870
16483883 AATCCGGTGA
* * * * *
16483893 ATCCCGCCCCTTTGGCAGGCTGAGCGCCTGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGA
1 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * *
16483958 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACAGGACCGAGGGTTA
66 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG
* * * *
16484023 CGGCAGCAAATG-TGGGGCTCAAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCA
131 CGGCAGCACATGCT-GGGCTCAGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCC
* * * * * *
16484087 TCGGAGCATCACCAGAGAACCTGACCGACAGCATTGGGGTTCCGACGATCGGAGGCCCGGGGGGG
195 TCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCC-GGGGGG
* * * *
16484152 TGTGCACACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATA
259 TGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* *
16484217 AAACCTCGAGAACACACA-CCCCTTAAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTAGC
324 AAACCTCGAGAACTCACACCCCCTT-AAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGC
*
16484281 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTCGAGTT
388 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
*
16484346 TTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCCACCAAGTTTGGGGCC
453 TTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* ** * * * ** *
16484411 AAAACTCTTTCTGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTGTGAAAATCATGAAATA
518 AAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATTGTGAAAAA
* * * *
16484476 TAGAAAACGAGTCGTCTTGCCATGAACCTTGATGTGAAGGCTTAAGGGACCATTATATGAATTTA
583 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* * *
16484541 AAATCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
648 CAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
16484606 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGACTCGTTTCGTCG
713 ATCGATCCACGGCTTGCGCATCCCG-CTCTCT---C--C----T---CG-CG---C---TCGTCG
* * ** * *
16484671 GTTGGCTTAGGCATA-TAAGTTCATTCCCAGTCTAGGATCAGACCGGACCAAGGGTTGTGGCAAC
758 GTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGC
* ** *
16484735 AGGATCGGCAGCACGTGGAGGGGGACCCGACCGATCCCCAGCTTGCGC
823 AGGATCGGCAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTGCGC
** *
16484783 ATCCTTCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTCTCGTGGGTTGACTTAGGCATACGGA
1 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * * *
16484848 GTTCATTCCCAATCTAAGCATACGTAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTG
66 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG
* * * * *
16484913 CGGCAACACATTCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCATTGGGG---CA----
131 CGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCCT
** * * *
16484971 C----CATCGCCGGAGAACCTGACCGGTAGCATTGGGGTTCCGGCGATCAAGGCGGCCGGGTGGG
196 CGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCC-GG-GGG
* * * *
16485032 GTGTGCCCACATGATGTGCGATGGTTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTAT
258 GTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* *
16485097 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCAATTGACA-TTTATAGGTTTGCTGCCAGTAGC
323 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGC
* * * *
16485161 CATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATTGTCACAAAATCTTGCACATTTCGAGTT
388 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * * *
16485226 TTTAGTTGAATGTTTTTGTGCATGCCAAAAAAAATACAAAGATCATGTCTACCAAGTTTGGGGCC
453 TTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * * * *
16485291 AAAACTCCTTCCGAAAAAATTTAAAAAAATCCCGAACCGTAAAAATTTTTTAAAAAATGTGAAAA
518 AAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAA-GTTTTGAAAATTGTGAAAA
*
16485356 ATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
582 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
*** * * *
16485421 ACAAGTTGTAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCGCCTACCACCC
647 ACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
*
16485486 -ATCGATCCACGGCTTGCGCA--CC-C-C-AT--T-----TCGTCGGTTGGCTTAGGCATAC-AG
712 TATCGATCCACGGCTTGCGCATCCCGCTCTCTCCTCGCGCTCGTCGGTTGGCTTAGGCATACGA-
* * * * * *
16485537 GGTTCATTCCCAGTCTAAGATCCA-ACCAGACCGAGGGTTGCGGCAGCAAGATAGACAGCACGTA
776 AGTTCATTCCCAGTCTAAGAT-CAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGTA
* * * * *
16485601 GAGGGGGACCCGATCAATCCCCGTCTTGAGT
840 GAGGGGGACCCGGTCGATCCCCGGCTTGCGC
*
16485632 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGTATACGGA
1 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * *
16485697 GTTTATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTA
66 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG
* * *
16485762 CAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCAC
131 CGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATC-C
* * * * *
16485827 T-GGAGCATCGCCGGAGAACCTAACCGACGGCATTGGGGTTTCGACAATCAGGGGGGCC---AGG
195 TCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGG
* *
16485888 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTGATATTGGCCCCCTATCCCTCATC
259 TGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * *
16485953 AAACCTCGAGAACTCAC-CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCT
324 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCC
* * * *
16486017 ATTAAAGTGTCTGAAATGGGGTCACTTTTTTCAAATGGTCACAAAATTTTATACACTTCAAGTTT
389 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * * * *
16486082 TTGGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTAGGGCCA
454 TTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* ** * *
16486147 AAACTCCTTCCAAAAATATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAGT
519 AAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATTGTGAAAAAT
* * * *
16486212 AAAAAACGAGTCCTCTTACCATGAAACTTCACGTGAAGGCTTAAGGGACCATAGTATGAATTTAC
584 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * **
16486277 AAGCAATAAAAGTGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
649 AAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* **
16486342 TCGATCCATGGCTCACGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCATCCACCTGCTCGT
714 TCGATCCACGGCTTGCGCATCCCG-CTCTCT---C--C----T---CG---------C-GCTCGT
* * * *
16486407 CCGTCGATTGGATTAGGCGTACGAAGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTT--
756 -CG--G-TTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGC
* * * * * *
16486470 ---A-C---AT---CAGCATGCAGAGGGGGACGCGATCAATCCCCGGCTTGTGC
817 GGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTGCGC
* * * *
16486514 ATCCCACCCCTCTAGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGA
1 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * * *
16486579 GTTCATTCCCAGTCTAAGCATAC-GAGTTCATTCCTAATCTAAGATCGGACCGGATCGAGGGTTA
66 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG
* *** * ** * ** * * *
16486643 CGACATTTC-T-TTTCGCT-AGGACATCAT-CACCG-G-AGCA-------TCGTCGGAGAACC-T
131 CGGCAGCACATGCTGGGCTCAGG-CAT-GTGC-TGGTGCTGCATTTTTCTTCGTCGGGGCACCAT
* * * * *** * * * ** **
16486694 GACT-GGCGGCATTG-AGG-TTTCGTCGATCGAGGGGGCGGTGGGGTGTGCAC-AC-AT--GATG
193 -CCTCGG-AGCATCGCCGGAGAACCT-GA-C-CGGCGGCATTGGGGT-T-C-CGACGATCGGGGG
** ** * * * * * **** * ** * * * *
16486752 TACGATGGGTGCTG-GTACTTGGCCCT-TA-TAT-TG-GC-CCCCCATCCCTCATCAAACCT--C
250 GCCGGGGGGTG-TGCGCACAT-G--ATGTACGATGGGTGCTGGTACTTGGC-CCTTATA-TTGGC
**** * ** ** * **** *** **
16486809 GAGATATCACAC-CACTTTAAAGTTC-AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG-TG
309 CCCCTATC-C-CTCA--TCAAACCTCGAGAACTCACA--CCCCCTTAAAG-AG-CATTTGAGAT-
* * * * * * * * ** * * **
16486871 TCTGAAATGGGGACACTTT-TTTCAAATGGTCACAAAATCTTGTATACTTCGAATTTTTAGCTGA
365 T-T--TAT-AGG----TTTGCTGCCAGTAGCCATTAAA----GTGT-C-T-GAA---AT-GGGGA
* * * * ** * * * *** * ***
16486935 AATTTTTTGTGC--AT-GCCAAAAAAAATACAAGGACCACGTCCACCAAGTTTGGGGC-CAAAAC
411 CACTTTTT-T-CAAATGGTC--ACAAAAT-CTTGTA-CAC-T---TCGAGTTTTTAGCTGAATTT
** * ** ** *** * *
16486996 TCCT-T-C---CGAAAAAATTTTA-AA--A--A-AAC--CCAA----ACCGCAAAAAGT--TT--
466 TTTTGTGCATGCCAAAAAA-AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * * **** * ***** * * * *** *
16487040 -TAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCTATGAAACTTCACGTGAAGGCT---TAA
530 AAAAAAATTTTAAAAAATCCCGAAC-CG-CAAAAAGTTTTGAAAATT---GTGAAAAATAGAAAA
* * ** * * * * * ** *
16487101 -GGGGCCAC-TG-TATG-AA-TTTAC---AAGCCATAAAAATGGCACTGGCA-TGTACAAATATA
590 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC-T--TAA-GGGAC---CATTGTATGAATTTA
* ** * * ** * * *** * *
16487157 AATATGTGAGT--AAAT-CCACCTACCACCCTATCGATCCATG--GCT-TGCGCGT---CCTATT
648 CA-A-GCCA-TAAAAATGGCA-TTGGCA---TGTAGAAATATGAAGATGTGC-C-TAAACCCA--
* *** * * * * * * * ** *
16487213 TCT-CTGGCCGA-CGTAGTGC-CTGCCTGCCCGT-CCG--CT-TGCTCG-TTTCATCGGTTGGCT
702 CCTACCACCCTATCG-A-TCCACGGCTTGCGCATCCCGCTCTCTCCTCGCGCTCGTCGGTTGGCT
* * * **** * * *
16487270 TAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGATCGGACTGAGGGTTGATATAGTATGATAG
765 TAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCG
* * * *
16487335 GTAGCACGCAGAAGGGGACCAGGTCGATCCCCGGCTTGCGC
830 GCAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTGCGC
*
16487376 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGCGTTGACTTAGGCATACGGA
1 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* *
16487441 GTTCATTCCCAGTCTAAG-AT-C--AG---------A--C------CGGA-C-GA---AGGGCTA
66 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG
* * * * *
16487480 CGGCAGCACATGTTAGGCTCGGGCTTGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA---T
131 CGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCCT
* * * * * * *
16487542 C---G--T---CGGAGAACCTAACCGACGGCATTGGGGTACCGGCGATCGGGGTAGCCAGGGGGC
196 CGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGG-GGCCGGGGGGT
* ** * *
16487599 GTGCGCACATGATGTGCGATGGGTGCTCATACCTGGCCCTTATATTGG-CCCCTATCCCTCAACA
260 GTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* * * *
16487663 AACCTCAAGAACTCACACCCCCTTAAGGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCA
325 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCA
* * *
16487728 TTAAAGTGTTTGAAATGGGGACACTTTTTTCATATGGTCACAAAATCTTGTACACTCCGAGTTTT
390 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * * ** * *
16487793 TAGCTGAATTTTTTTTTGCATGCCAAAAAAAATAAAAGAATCGTGTCTACCAAGTTTGGGACTAA
455 TAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * *
16487858 AACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTTGAAAATCGTGAAAAATA
520 AACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATTGTGAAAAATA
* *
16487923 GAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGTCTTAAGGGACCATTGTATGAATTTACA
585 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* * * * *
16487988 AGCCATAAAAATGGCATTGGCAAGCAGAAATATAAAGAAGTGCCTAAACCAACCTACCACCCTAT
650 AGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
*
16488053 CGATCCACGGCTTGCGCATCCCG-TCTCT-CT-G-G-TCGTCGGTTGGCTTAGGCATACGGAGTT
715 CGATCCACGGCTTGCGCATCCCGCTCTCTCCTCGCGCTCGTCGGTTGGCTTAGGCATACGAAGTT
* * * * * * *
16488113 CATTCCCAGTCTAAGATCAGACCTGACTGAGGGTTGCAGCAGTAGGATTGGTAACACGCAGAGGG
780 CATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGG
* *
16488178 GGACCCGGCCGATCCCCCGCTTTG-GC
845 GGACCCGGTCGATCCCCGGC-TTGCGC
* * *
16488204 ACCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATATGGA
1 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * * *** * * *
16488269 GTTCATTCCCAGTCTAAGCAAATGGAGTTCATTCCCAGTCTAAGATCGAAATAGACCAAGGTTTA
66 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG
* * * * *
16488334 CGGTAGCACCTGCTGGGCTCAGGCATGTGCTGGTG-TCACATTTTTCTTCATTGGGGCACCATCG
131 CGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCT-GCATTTTTCTTCGTCGGGGCACCATC-
* * * * *
16488398 CT-GGAGCATCACCGGAGAACCGGACCGGCGACATTGTGGTTCCGACGATCGGGGGGCCAGGGGG
194 CTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGG
* * * * *
16488462 TGTGCGCACATAATGTGCGATGGGTACTGGTACTTGGCCATTATATTGGCCCCCTATCCCACATC
259 TGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
*
16488527 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGGC
324 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCC
* * * *
16488592 ATTAAAGTGTCTTAAATGGGGACACATTTTTCAAATGGTCACAAAATCTCGTACACTTCAAGTTT
389 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * * * **
16488657 TTAGTTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCTCGACTACCAAGTTTTAGGCCA
454 TTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * ** *
16488722 AAATTTCTTCCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAAT
519 AAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATTGTGAAAAAT
* * * * *
16488787 AGAAAATGAGTCTTCTTGCCATGAAACTTCACGTGAAGGGTTAAGGGACCATTGCATGAACTTAC
584 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
*
16488852 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
649 AAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * *
16488917 TCGATTCACGGCTCACGCATCCTGTCTCTCTGGCCGGCATAGTACCGCCCGCCCGCCCGCCCGCT
714 TCGA-T-----C-CACG------G---CT-T-G-C-GC--A-T--------CCCGCTCTCTC-CT
* * * * *
16488982 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCTCAGTCTAAGATCAAACCAGACTG
747 CG--CG-CTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACTG
* * * ** * *
16489047 AGGGTTGCGGTAGCAAGATTGGCAGCACACAGAAGGGGACCCGGTCGATCCCTGGCTTGCGC
809 AGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTGCGC
*
16489109 ATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
1 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
** * *
16489174 GTTCATTCCCAGTCTAAGCATACGGAGAGCATTCCCAGTCTAAGATAGGACTGGACCGAGGGTTG
66 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG
* * * * * *
16489239 CGGTAGCACATGCTGGGCTCAGCCATGTGCTGGTGCTGCATTTTTCTTCGCCGAGGTACCATCGT
131 CGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCCT
* * *
16489304 CGGAGCATCGCCGGAGAA-CTCGACCGGTGGCATTGGGGTTCTGACGATCGGGGGGGCCAGGGGG
196 CGGAGCATCGCCGGAGAACCT-GACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGG
* * *
16489368 TGTGCGCACATGATGTACGATGGATGCTGGTACTTGGCCTTTATATTGGCCCGCTATCCCTCATC
259 TGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * *
16489433 AAACCTCGAGAACACACACCCCCTTAAAGCGCATTTGAGATTTTATAGGTTTGCGGCCAGTAGCC
324 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCC
* * * *
16489498 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATAGTCACAAAATCTTGCAAACTTAGAGTTT
389 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* ** *
16489563 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCATTTTTGCGGCCA
454 TTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * *
16489628 AAA-TACCTTCCAAAACAA-TTTAAAAAATCCTGAACCACAAAAAGTTTTGAAAATTGTGAAAAA
519 AAACT-CCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATTGTGAAAAA
* *
16489691 TTGAGAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
583 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
*
16489756 CAAGCCATAAAAATGGCATTGGCATGTAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCT
648 CAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
*
16489821 ATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTCGTGACCGCCCGCCTGCTCGCCCG
713 ATCGATCCACGGCTTGCGCATCCCG-----C---T---C-TC-T----------C--CT----CG
* *
16489886 CATGCTCGTTTCGTTCGTTGGCTTAGGCATATGAAGTTCATTCCAAGTCTAAGATCAGACCGGAT
749 C--GCTCG--TCG---GTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGA-
* * * * *
16489951 CT-AGGGTTGCGGTAGTAGGATCGGCAGCACATAGAGGGGGACGCGGTCGATCCTCGGCTTGCGC
806 CTGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTGCGC
* * *
16490015 ATCCCACCCCTCTGGCCGACTGAGCGCCCGTACGCTCGTTTCGTGGGTTGA-TTGAGGCATACGG
1 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT-AGGCATACGG
* * * *
16490079 AGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCTAGTCTAAGATAGGACCGGATCGAGGGTT
65 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT
* *
16490144 GCGGCAGCACATGCTGGGCTC-GGCCATGTGCTAGTGCTGCATTTTTCTTCGTCGGGGTACCATC
130 GCGGCAGCACATGCTGGGCTCAGG-CATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATC
* * * * **
16490208 ACCCGAAACATTGCCGGAGAACCCT-ACCGGCGGCATTGGGGTTCCGACGATCGGGGGGTTTGGG
194 -CTCGGAGCATCGCCGGAGAA-CCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGG--CCGG
* *
16490272 GGGGTGTGTGCACATGATGTACGATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCT
255 GGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
*
16490337 CATCAAACCTCGAGAACTCACACCCCCTTAAAGCGCATTTGAGATTTTATAGGTTTGCTGCCAGT
320 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGT
* * *
16490402 AGCCATTACAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTAGA
385 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * * *
16490467 GTTTTTACCTGAAGTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCATGTTT-GG
450 GTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * ** * **
16490531 GCTAAAACACCTTCCAAAAAAATTTTAAAAAATCTTGAACTGCAAAAAGTTTTGAAAATTGCAAA
515 GCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATTGTGAA
* *
16490596 AAATAGAGAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAAT
580 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* *
16490661 TTACAAGCCATAAAAATGGCATTGACAAGTAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
645 TTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* *
16490726 CCTATCGAT-CATGGCTTGCGCATCTCGTCTCTCTGGCCGACGCAGTGCCCGCCCGCCCGCCCGC
710 CCTATCGATCCACGGCTTGCGCATCCCG-CTCTCT------C-C--T------------------
* * * **
16490790 CCGCTTGCTCGATTCGTTGGTTGGCTTAGGCATATGAAGTTCATTCCAAGTCTAAGATTAGATTG
747 -CGC--GCTCG--TC---GGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCG
* * * * * ** *
16490855 GAAC-GAGGGTTGTGGCAGCAGGATCGACAGCACGTAAAAGGGGACCCGGTCGATCCTCAACCTG
804 G-ACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTG
16490919 CGC
868 CGC
*
16490922 ATCCCGCCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
1 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
*
16490987 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATAGGACCGGACCGAGGGTTG
66 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG
* * * *
16491052 CGGCAGCACATGCTGGGCTC-GGCCATGTGCTGGTGCTACATTTTTCTTCGCCGGGGTACCATCA
131 CGGCAGCACATGCTGGGCTCAGG-CATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCC
* * * * *
16491116 TCTGAGCATCGTCGGAGAACCCGACCAGCGGCATTGGGGTTTCGACGATCGGGGGGGCCGGCGGG
195 TCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCC-G-GGG
*
16491181 GGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCA
257 GGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* *
16491246 TCAAACCTGGAGAACTCACACCCCCTTAAAGCGCATTTGAGATTTTATAGGTTTGCTGCCAGTAG
322 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAG
* * * *
16491311 CCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTCTAAACTTAGAGT
387 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * *
16491376 TTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCATGTTTAGGGC
452 TTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * * **
16491441 TAAAACACCTTCCAAAAAAATTTTAAAAAATCCTGAACCGCAAAAATTTTTGAAAATTACGAAAA
517 CAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATTGTGAAAA
* *
16491506 ATAGAGAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTT
582 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
**
16491571 ACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
647 ACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* *
16491636 TATCGATCCATGGCTTGTGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACATGCTC
712 TATCGATCCACGGCTTGCGCATCCCG-CTCTCT---C--C----T-------CG----C--G--C
* * * *
16491701 GTTTCGTCGGTTGGCTTAGGCATATGAAGTTCATTCCAAGTCTAAGATCAGACCAGACTAAGGGT
752 ---TCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGT
* ** * *
16491766 TGTGGCAGCAGGATCGATAGCACGTAGA-GGGGACCCAGTCGATCCTCGGCTTGCGC
814 TGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTGCGC
* *
16491822 ATCCCGCCCCTCTGGCCGGCTGAGAGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGA
1 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * * *
16491887 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTCCAGATAGGACCGGATCGATGGTT
66 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT-AAGATCGGACCGGACCGAGGGTT
* * *
16491952 GCGGCAGCACATGCTGGGCTC-GGCCATGTGCTGGTGCTACATTTTTCTTCGTTGGGGTACCATC
130 GCGGCAGCACATGCTGGGCTCAGG-CATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATC
* * * * *
16492016 ATCGGAGCATCGCCGGAGAACCCGACCGACGGCATTGGGGTTTCGACGATCAGGTGGGCCGGCGG
194 CTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCC-G-GG
*
16492081 GGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTAT-CCTC
256 GGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * *
16492145 ATCAAACCTTGAGAATTCACACCCCCTTAAAGCGCATTTGAGATTTTATAGGTTTGCTGCCAGTA
321 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTA
* * * * *
16492210 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAATTTTTCTAAACTTAGAG
386 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* ** *
16492275 TTTTTAGCTGAATTTTTTTTTGCATGCCAAAAAAAATACAAGGATCATATCTACCATGTTTGGGG
451 TTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* *
16492340 CCAAAA---C-ACC----------T------T-CC-AA----AAAAAGTTTTG-AAATTGTGAGA
516 CCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATTGTGAAA
* * * * *
16492378 AATAGAGAACGAATCGTCTTGCAATGAAACCTCACGTGAAGGCTTAAGGGACCATTGTACGAATT
581 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* *
16492443 TACAAGCCATAAAAATTGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
646 TACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
**
16492508 CTATCGATCCGTGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCTGCCCGCC
711 CTATCGATCCACGGCTTGCGCATCCCG-----CT------C----T------CT-CCT-------
* *
16492573 CGCATGCTCGTTTCGTTGGTTGGCTTAGGCATATGAAGTTCATTCCAAGTCTAAGATCAGACCGG
747 CGC--GCTCG--TC---GGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGG
* * * * *
16492638 ACTGAGGGTTGCGGCAGCAGGATCGACAGCATGTAGAGGGGGACCTGGTCGATCCTCGGCTTGTG
805 ACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTGCG
16492703 C
870 C
* *
16492704 ATCCCGCCCCTCTGGCCGACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
1 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
*
16492769 GTTCATTCCCAG--T---C-TA---AG---------A---T---A--GGACCGGACTGAGGGTTG
66 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG
* * * * *
16492808 CGGCAGCACATGCTGGGCTC-GACCATGTGCTGGTGCTGTATTTTTCTTCGCCAGGGTACCA---
131 CGGCAGCACATGCTGGGCTCAG-GCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCC
* * * *
16492869 T-----CA---CCGAAGAACCCGACCGACGACATTGGGGTTCCGACGATCGGGGAGGCCGGGGGG
195 TCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGG-GGCC-GGGGG
* * *
16492926 GTGTGCGCACATGATGTATGATGGGTGCTAGTACTTGGCCTTTATATTGGCCCCCTATCCCTCAT
258 GTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* * * * *
16492991 CAAACCTTGAGAACTCACACCCCCTTAAAGTGTATTTGAGATTTTATAGGTTTGTTACCAGTAGC
323 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGC
* * * *
16493056 CATTAAAGTGTCTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTCTAAACTTAGAGTT
388 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* *
16493121 TTTAGCTAAATTTTTTTGTGCATGCC-AAAAAAATACAAGGATCACGTCTACCATGTTTGGGGCC
453 TTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * **
16493185 AAAACACCTTCCGAAAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTTGAAAATTGTGAAAAA
518 AAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATTGTGAAAAA
** ** *
16493250 TAGGGAACGAGTCGTCTTGCCATGAAACTTCATATGAAGGCTTAAGAGACCATTGTATGAATTTA
583 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
16493315 CAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
648 CAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* *
16493380 ATCGATCCATGGCTTGTGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGTCCGCCCACATGCTCG
713 ATCGATCCACGGCTTGCGCATCCCG---CTCT------C----T--CC-T-CG----C--GCTC-
* * * *
16493445 TTTTGTCGGTTGGCTTAGGCATATGAAGTTCATTCCAAGTCTAAGATCAGACCAGACTAAGGGTT
754 ----GTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTT
* ** * *
16493510 GTGGCAGCAGGATCGATAGCACGTAGA-GGGGACCCAGTCGATCCTCGGCTTGCGC
815 GCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTGCGC
* *
16493565 ATCCCGCCCCTCTGGCCGGCTGAGAGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGA
1 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
*
16493630 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATAGGACCGGACCGAGGGTTG
66 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG
* * * * * *
16493695 CGGTAGCACATGTTGGGCT-TGGCCATGTGCTGGTGCTGCATTTTTCTTCGCCGGGGTACCATCA
131 CGGCAGCACATGCTGGGCTCAGG-CATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCC
* * * * * *
16493759 TCGGAGCATCTCCGGAGAACCCGACTGGCGGCATTGGCGTTCCGACGATCGGAGGGTCGGGGGGG
195 TCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGG-GGGGCCGGGGGG
* * *
16493824 TGTGCGGAGATGATGTACGATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATC
259 TGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* *
16493889 AAACCTCGAGAACTCACACCCCCTTGAAGCGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCC
324 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCC
* *
16493954 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTAGAGTTT
389 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* *
16494019 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCA
454 TTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * *
16494084 AAACACCTTTCAAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATTATGAAAAAT
519 AAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATTGTGAAAAAT
**
16494149 AGGGAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
584 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
** * *
16494214 AAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTTCCTAAATCCACCTACCACCCTA
649 AAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
*
16494279 TCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGTCATAGTGCCCGCCCGCCCGCTCGCCCGT
714 TCGATCCACGGCTTGCGCATCCCG-CTCTCT---C--C----T-------CG--CGCT----CG-
* *
16494344 TCATTTTTTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCTGACCGGACTGAGG
755 --------TCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGG
* * * *
16494409 GTTGCGGCAACAGGATCGGCAGCACGCAGAGGGGGGCCCAG-CTGATCCCCGGCTTGCGC
812 GTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGGTC-GATCCCCGGCTTGCGC
* * * * *
16494468 ATCCCGCCCCTCTGGCCGACCGAGCGGCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGAA
1 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* *
16494533 GTTCATTCCCAG-----GC-TA---AG---------A-TC-AA-ATC--A---AACTGAGGGTTG
66 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG
* * * * ** * * *
16494572 CGGCAGCACATGCTGGGCTCGGGCTTATGCTGGTG-TCGTATTTTTCTTCACCAGGACACCATCG
131 CGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCT-GCATTTTTCTTCGTCGGGGCACCATCC
* * ** ** * * * * *
16494636 TCGGAGCATTGTCAAAGAACCTGACCAACGGTATTGGGGTTCTGGCGATCGAGGGGGCCAGTGGG
195 TCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGG
* * * * *
16494701 TGTGCGCACATCATGTGCGATGGGTACTGGTATTTGGCCCATATATTGGCCCCCTATCCCTCATC
259 TGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * *
16494766 AAACCTCGAGAACTCACACCCCGTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCC
324 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCC
* * * * *
16494831 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCTAATGGTCGCAAAATCTTCTACACTTCAAATTT
389 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* *
16494896 CTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACC-AGTTTGGGGCCA
454 TTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * * ** **
16494960 AAACACTTTCCAAAAAAATTTTAAAAAATCTCAAACCG-TTAAAGTTTTGAAAATCATGAAAAAT
519 AAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATTGTGAAAAAT
* * *
16495024 AGAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTAC
584 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * *
16495089 AAGCCATAAGAATGGCATTGGCACGTAGAAATATGAAGATGTGCCT-AA---A-C--CC-GCC--
649 AAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
16495144 -CG--CC-C-GC-T-CG---CCCG-T-TCGT--T-----TCGTCGGTTGGCTTAGGCATAC-AGA
714 TCGATCCACGGCTTGCGCATCCCGCTCTC-TCCTCGCGCTCGTCGGTTGGCTTAGGCATACGA-A
** ** * ** *
16495189 GTTCATTCCCAGTCTAAGATCCCACCGGACTGAGGGTTATGGCAACAGGATCGATAGCACATAGA
777 GTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGA
* *
16495254 GGGGGACCCGGCCGATCACCGGCTTGCGC
842 GGGGGACCCGGTCGATCCCCGGCTTGCGC
** * * * * *
16495283 ATCCCGCCCCTCTGGCCGATTGAACGCCCGTACGCTCATTTTGTGGGTTGACTTAGGCATACAGA
1 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * * *
16495348 GTTCATTCCTAGTCTAAACATACGGAGTTCATTCCGAGTCTAAGATCGGACCGGACCGAGGGTTA
66 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG
* * * * *
16495413 CGGTAGCACATACTGGGCTCAGGTATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCAT
131 CGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCCT
* * ** ** * * **
16495478 CGAAGCACCGCTAGAGAACCTGACCAACGGTATTGGGGTAT-CGACGATCACGGGGGATGGGGGG
196 CGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGT-TCCGACGATC-GGGGGGCCGGGGGG
* * *
16495542 TGTGCGCACATGATGTGCGATGGCTGCTGGTCCTTGGCCCTTATATTGGCCCCCTATCCCTCATC
259 TGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* *
16495607 AAACCTCAAGAACTCACACCCCGTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCC
324 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCC
*
16495672 ATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
389 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * * * *
16495737 TTGGGTGAATTTTTTTTTTCATGCCAAAAAAAATACAAGGATCAGGTCTACCAAGTTTGGGGCCA
454 TTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * * * *
16495802 AAACTCCTTCCCAAAAAACTTTAAAAAATCCTGAACCACAAAAAGTTTCGAAAATCT-TGAAATA
519 AAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAAT-TGTGAAAAA
*
16495866 TAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
583 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* * * **
16495931 CAAGACATAAAAATGGCATTGGCATGCAAAAATACAAAGATGTGCCTAAACCCACCTACCACCCT
648 CAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
*
16495996 ATCGATCCACGGCTTGCGCATCTCGTCTCTCT
713 ATCGATCCACGGCTTGCGCATCCCG-CTCTCT
16496028 GGCCAGCGTA
Statistics
Matches: 9383, Mismatches: 1241, Indels: 1267
0.79 0.10 0.11
Matches are distributed among these distances:
807 9 0.00
808 4 0.00
809 1 0.00
810 2 0.00
811 3 0.00
812 6 0.00
813 16 0.00
814 11 0.00
815 171 0.02
816 1 0.00
818 4 0.00
819 1 0.00
820 5 0.00
821 5 0.00
824 19 0.00
825 15 0.00
826 4 0.00
827 19 0.00
828 213 0.02
829 46 0.00
830 7 0.00
831 8 0.00
832 16 0.00
833 6 0.00
834 9 0.00
835 22 0.00
836 18 0.00
837 28 0.00
838 16 0.00
839 14 0.00
840 7 0.00
841 336 0.04
842 48 0.01
843 224 0.02
844 197 0.02
846 1 0.00
847 16 0.00
848 24 0.00
849 248 0.03
850 54 0.01
851 5 0.00
852 5 0.00
853 4 0.00
854 210 0.02
855 347 0.04
856 2 0.00
857 5 0.00
858 14 0.00
859 7 0.00
860 51 0.01
861 103 0.01
862 202 0.02
863 8 0.00
864 55 0.01
865 409 0.04
866 4 0.00
867 5 0.00
868 8 0.00
869 13 0.00
870 169 0.02
871 27 0.00
872 25 0.00
873 178 0.02
874 30 0.00
875 133 0.01
876 57 0.01
877 336 0.04
878 30 0.00
879 59 0.01
880 221 0.02
881 389 0.04
882 255 0.03
883 24 0.00
884 7 0.00
885 35 0.00
886 21 0.00
887 79 0.01
888 3 0.00
889 8 0.00
890 176 0.02
891 10 0.00
892 8 0.00
893 7 0.00
894 51 0.01
895 8 0.00
896 25 0.00
897 244 0.03
898 299 0.03
899 8 0.00
900 330 0.04
901 283 0.03
902 84 0.01
903 111 0.01
904 8 0.00
905 480 0.05
906 583 0.06
907 627 0.07
908 615 0.07
909 28 0.00
910 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (870 bp):
ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG
CGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCCT
CGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTG
TGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCAT
TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
AGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
ACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATTGTGAAAAATAG
AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
GCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
GATCCACGGCTTGCGCATCCCGCTCTCTCCTCGCGCTCGTCGGTTGGCTTAGGCATACGAAGTTC
ATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGG
GACCCGGTCGATCCCCGGCTTGCGC
Found at i:16489206 original size:26 final size:26
Alignment explanation
Indices: 16489165--16489217 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16489155 GTTGACTTAG
**
16489165 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGAGCATTCCCAGTCTAA
16489191 GCATACGGAGAGCATTCCCAGTCTAA
1 GCATACGGAGAGCATTCCCAGTCTAA
16489217 G
1 G
16489218 ATAGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23
Consensus pattern (26 bp):
GCATACGGAGAGCATTCCCAGTCTAA
Found at i:16490100 original size:26 final size:26
Alignment explanation
Indices: 16490071--16490123 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16490061 GTTGATTGAG
*
16490071 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
16490097 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16490123 G
1 G
16490124 ATAGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16491014 original size:26 final size:26
Alignment explanation
Indices: 16490978--16491030 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16490968 GTTGACTTAG
16490978 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16491004 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16491030 G
1 G
16491031 ATAGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16491908 original size:26 final size:26
Alignment explanation
Indices: 16491878--16491927 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
16491868 GTTGACTTAG
16491878 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16491904 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
16491928 CCAGATAGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16493651 original size:26 final size:26
Alignment explanation
Indices: 16493621--16493673 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16493611 GTTGACTTAG
16493621 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16493647 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16493673 G
1 G
16493674 ATAGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16495376 original size:26 final size:26
Alignment explanation
Indices: 16495340--16495390 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16495330 TTGACTTAGG
*
16495340 CATACAGAGTTCATTCCTAGTCTAAA
1 CATACAGAGTTCATTCCGAGTCTAAA
*
16495366 CATACGGAGTTCATTCCGAGTCTAA
1 CATACAGAGTTCATTCCGAGTCTAA
16495391 GATCGGACCG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATTCCGAGTCTAAA
Found at i:16496533 original size:734 final size:738
Alignment explanation
Indices: 16495315--16496787 Score: 2172
Period size: 734 Copynumber: 2.0 Consensus size: 738
16495305 AACGCCCGTA
* * *
16495315 CGCTCATTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAACATACGGAGTTCAT
1 CGCTCATTTTGTGGGTTGACATAGGCATACAGAGTTCATTCCCAATCTAAACATACGGAGTTCAT
* * ** *
16495380 TCCGAGTCTAAGATCGGACCGGACCGAGGGTTACGGTAGCACATACTGGGCTCAGGTATGTGCTG
66 TCCCAGTCTAAGATCGCACCGGACCGAGGGTTACGACAGCACATACTGGGCTCAGGCATGTGCTG
**
16495445 GTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGAAGCACCGCTAGAGAACCTGACCAACGGTA
131 GTGCCGCATTTTTCTTCGTCGGGGCACCA-CATC--AG-ACCG--AGAGAACCTGACCAACGACA
* *
16495510 TTGGGGTATCGACGATCACGGGGGATGGGGGGTGTGCGCACATGATGTGCGATGGCTGCTGGTCC
190 TTGGGGTATCGACGATCACGGGGGAGGGGGGGTGTGCGCACATGATGTGCGATGGCTGCTGGTAC
* *
16495575 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCGTTAAAGAGCA
255 TTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCA
* * *
16495640 TTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCA
320 TTTGAGATTTTATAGGTTTGCCGCCAGTAGCAATTAAAGTGTCTAAAATAGGGACACTTTTTTCA
* * *
16495705 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGGTGAATTTTTTTTTTCATGCCAAAAAAAA
385 AATGGTCACAAAATCTTGTACACTTCAAGTTTTTGGGTGAATGTTTTTTTGCATGCCAAAAAAAA
*
16495770 TACAAGGATCAGGTCTACCAAGTTTGGGGCCAAAACTCCTTCCCAAAAAACTTTAAAAAATC-CT
450 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCCAAAAAACTTTAAAAAATCTC-
* * * *
16495834 GAACCACAAAAAGTTTCGAAAATCTTGAAATATAGAAAACAAGTCGTCTTGCCATGAAACTTCAC
514 GAACCACAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACAAGTCGTCTTGCCATGAAACTTCAC
16495899 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGGCATTGGCATGCAAAAAT
579 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGGCATTGGCATGCAAAAAT
* *
16495964 ACAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTG
644 ACAAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
*
16496029 GCCAGCGTAGTGCCCGCCCGCCCGCCCGCC
709 ACCAGCGTAGTGCCCGCCCGCCCGCCCGCC
* * * * *
16496059 CGCTCGTTTTGTTGGTTGGCATAGGCATACGGAGTTCATTCCCAATCTAAGA-ATATGGAGTTCA
1 CGCTCATTTTGTGGGTTGACATAGGCATACAGAGTTCATTCCCAATCTAA-ACATACGGAGTTCA
* * * *
16496123 TTCCCAGTCTAAGATCGCACCGGATCGAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTGTT
65 TTCCCAGTCTAAGATCGCACCGGACCGAGGGTTACGACAGCACATACTGGGCTCAGGCATGTGCT
* *
16496188 GGTGCCGTATTTTTCTTCGTCGGGGCA-C-CATC-G-CCG-GAGAACCTGACCGACGACATTGGG
130 GGTGCCGCATTTTTCTTCGTCGGGGCACCACATCAGACCGAGAGAACCTGACCAACGACATTGGG
** * * *
16496248 GT-TCCGACGATCGGGGGGGCCGGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTG
195 GTAT-CGACGATCACGGGGG-AGGGGGGGTGTGCGCACATGATGTGCGATGGCTGCTGGTACTTG
* * *
16496312 GCACTTGTATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
258 GCACTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTT
16496377 GAGATTTTATAGGTTTGCCGCCAGTAGCAATTAAAGTGTCTAAAAT-GGAGACACTTTTTTCAAA
323 GAGATTTTATAGGTTTGCCGCCAGTAGCAATTAAAGTGTCTAAAATAGG-GACACTTTTTTCAAA
*
16496441 TGGTCACAAAATCTTGTACACTTCAAGTTTTTGGGTGAATGTTTTTTTGCATGCCAACAAAAATA
387 TGGTCACAAAATCTTGTACACTTCAAGTTTTTGGGTGAATGTTTTTTTGCATGCCAAAAAAAATA
* ** * *
16496506 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTCTGAAAAAATTTTAACAAATCTCGAA
452 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCCAAAAAACTTTAAAAAATCTCGAA
** * **
16496571 CCGTAAAATGTTTCAAAAATCGTGAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCACGTG
517 CCACAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACAAGTCGTCTTGCCATGAAACTTCACGTG
* * * * *
16496636 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCATGTAGAAATATA
582 AAGGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGGCATTGGCATGCAAAAATACA
* *
16496701 AAGATGTACTTAAACCCAGCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGACC
647 AAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGACC
* * *
16496766 GGTGTAGTGCCTGCCCGCCCGC
712 AGCGTAGTGCCCGCCCGCCCGC
16496788 TCGTTTCGTC
Statistics
Matches: 656, Mismatches: 68, Indels: 20
0.88 0.09 0.03
Matches are distributed among these distances:
732 1 0.00
733 38 0.06
734 470 0.72
735 1 0.00
736 3 0.00
738 1 0.00
741 4 0.01
743 1 0.00
744 136 0.21
745 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (738 bp):
CGCTCATTTTGTGGGTTGACATAGGCATACAGAGTTCATTCCCAATCTAAACATACGGAGTTCAT
TCCCAGTCTAAGATCGCACCGGACCGAGGGTTACGACAGCACATACTGGGCTCAGGCATGTGCTG
GTGCCGCATTTTTCTTCGTCGGGGCACCACATCAGACCGAGAGAACCTGACCAACGACATTGGGG
TATCGACGATCACGGGGGAGGGGGGGTGTGCGCACATGATGTGCGATGGCTGCTGGTACTTGGCA
CTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAG
ATTTTATAGGTTTGCCGCCAGTAGCAATTAAAGTGTCTAAAATAGGGACACTTTTTTCAAATGGT
CACAAAATCTTGTACACTTCAAGTTTTTGGGTGAATGTTTTTTTGCATGCCAAAAAAAATACAAG
GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCCAAAAAACTTTAAAAAATCTCGAACCAC
AAAAAGTTTCAAAAATCGTGAAAAATAAAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGG
CTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGGCATTGGCATGCAAAAATACAAAGA
TGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGACCAGCG
TAGTGCCCGCCCGCCCGCCCGCC
Found at i:16500286 original size:26 final size:26
Alignment explanation
Indices: 16500250--16500300 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
16500240 TTGACTTAGG
16500250 CATACAGAGTTCATTCCCAGTCTAAC
1 CATACAGAGTTCATTCCCAGTCTAAC
*
16500276 CATACGGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATTCCCAGTCTAA
16500301 GATCGGATCG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAC
Found at i:16501127 original size:897 final size:891
Alignment explanation
Indices: 16499381--16502101 Score: 3762
Period size: 897 Copynumber: 3.0 Consensus size: 891
16499371 GTTGACTTAG
* * * * *
16499381 GCATGCGGAGTTCATTCCCAGTCTAAGATCGGATTGAACCAAGGATTGCCGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAACCAAGGGTTGCGGCAGCACATGCTGAG
* *
16499446 CTCAGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACATCGCCAGAGCATCGTTGGAGAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACATCGCCAGAGCATCGTTGGAGAA
* ** * * *
16499511 CCTGACCAGCGATATTGGGGTTCCGGCGATCGGGGG--GGCTGGGGGGTGTCCGCACATGATGTG
131 CCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGCCGG-AGGGGGGTGTGCGCACATGATGTG
* *
16499574 CGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
195 TGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
16499639 TCCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAAT
*
16499704 AGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
16499769 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCTTTCCGAAAAA
390 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-AAAAACTCCTTCCGAAAAA
* * * *
16499834 AGTTTT-AAAAATCCCGAATCGTAAAAAGTTTTAAAATTCGTGAAAAATAGAAAACGAGTCGTCT
454 A-TTTTAAAAAAT-CCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCT
* * * *
16499898 TGCCATGAAACTTGATGTGAAGGCTTAAGGGACCATAGTATGAATTTTCAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
16499963 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCCTAC-CTTA
582 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT-CC-ACGCTTG
** * *
16500027 CGCATCTTGTCTCTCTGGCCGGCGTAGTGCCCGCCAGCCCGCTCGTTTCGTCAGTTGGCTTAGGC
645 CGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGC
* * * * *
16500092 ATACAGAGTTCATTCCCAGTCTAAGATCGGGCCAGA-TCGAGGGTTGC-GATAGTAGGATTGGTA
710 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACT-GAGGGTTGCAG-CAGCAGGATTGGTA
* ** * * * *
16500155 GCACACAGAAGGGGATGCGGTCAATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGC
773 GCACACAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
*
16500220 CTGCACGCTCGTTTCGCGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
838 C-GCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* *
16500275 CCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAACCAAGGGTTGCGGCAGCACATGCTGTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAACCAAGGGTTGCGGCAGCACATGCTGAG
* * * *
16500340 CCCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCAGGGCACATCGCCAGAGCATCGTTAGAGAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACATCGCCAGAGCATCGTTGGAGAA
*
16500405 CCTGACCGGGGGCATTGGGGTTCCGACGATCGGGGGCACCGGAGGGGGGTGTGCGCACATGATGT
131 CCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGG--CCGGAGGGGGGTGTGCGCACATGATGT
* *
16500470 GTGATAGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAACAAACCTCGAGAACTCA
194 GTGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
16500535 CACCCCCTTAAAGAGTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAA
* *
16500600 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTATTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
16500665 GTGAATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGAAAAAACTCCTTCCGAGAT
389 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-AAAAACTCCTTCCGAAAA
* * *
16500730 AATTTTAAAAAATCTCGAACCGCAGAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCATCT
453 AATTTTAAAAAATC-CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCT
16500795 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* ** *
16500860 ATTGGCACACAGAAATATGAAGATTTGTTTAAACCCACCTACCACCCTATCAATCCACGGCTTGC
582 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC-GCTTGC
* * *
16500925 GCATCCCGTCTCTCTTGTCGGTGTAGTGCCCGCCCGCCCGCTCGTTTCGTC-GATTGGCTTAGGC
646 GCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCAG-TTGGCTTAGGC
* * * *
16500989 ATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCAGCACCAGGATTGGCAGT
710 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCAGCAGCAGGATTGGTAGC
* * * *
16501054 ACACAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTAGCCGGCTAAGCAGCC
775 ACACAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC-GCC
* *
16501119 GTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
839 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * * * *
16501172 GCATACGAAGTTCATTCCC-GATCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCACATGCTAA
1 GCATACGGAGTTCATTCCCAG-TCTAAGATCGGATCGAACCAAGGGTTGCGGCAGCACATGCTGA
* * * ** * **
16501236 GCTCGGGCATCTACTGGTGCCGTATTTTTCTTCGTCGGGGCACCATC-TTATGAGCATAGCCGGA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA-CATCGCCA-GAGCATCGTTGGA
* * * * * * *
16501300 GAACTTAACCGACGGCATTAGGGTTCCGATGATCGGAGGGGCC--A-GGGGGTGTGCACACATGG
128 GAACCTGACCGGCGGCATTGGGGTTCCGACGATC-G-GGGGCCGGAGGGGGGTGTGCGCACATGA
* * * *
16501362 TGT-TCGATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGTA
191 TGTGT-GATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
16501426 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCT
255 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCT
* * *
16501491 GAAATGGGGACATTTTTTTCAAATGGTCACAAAACCTTGGACACTTCGAGTTTTTAGCTGAATTT
320 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * **
16501556 TTTTGTGCATGCCAATAAAAATACAAGGATCA--TCTACCAAGTTTGGGGCAAAACTCCTTTTGA
385 TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGAAAAACTCCTTCCGA
*
16501619 AAAAATTTGAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCA
450 AAAAATTTTAAAAAATCC-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCA
* * *
16501684 TCTTGCCATGAAAGTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTATAAAAAT
514 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
16501749 GGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCGACCACCCTATCGATCTACAGCT
579 GGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC-GCT
* * *
16501814 TGCGCATCCCGTCTCTCTAGCCAGCGTAGCGCCCGCCCACTCGCCCGTCCGCTCGTTTCATCAGT
643 TGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCG--C-C-CG--C--CCGCTCGTTTCGTCAGT
* * * * *
16501879 TGGCTTAGGCATACGGAGCTCATTCCCAGTCTAAGATCAGATCGAACTAAGGGTTGCAGCAGCAG
700 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCAGCAGCAG
* * ** * * * *
16501944 GATCGATAGCACACAGAGGAAGACCTGGCAGATCCTCGGCTTGCGCATGCCGCCCCTCTGGCCGG
765 GATTGGTAGCACACAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* ** * *
16502009 CTGAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATATTGAGTTCATCCCCAGTATAA
830 CTGAGCG-CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* *
16502072 GCATGCGGAGTTCATTCCCGGTCTAAGATC
1 GCATACGGAGTTCATTCCCAGTCTAAGATC
16502102 AAACCGGACT
Statistics
Matches: 1621, Mismatches: 176, Indels: 54
0.88 0.10 0.03
Matches are distributed among these distances:
891 1 0.00
892 219 0.14
893 16 0.01
894 151 0.09
895 229 0.14
896 12 0.01
897 730 0.45
898 51 0.03
899 2 0.00
900 208 0.13
901 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (891 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAACCAAGGGTTGCGGCAGCACATGCTGAG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACATCGCCAGAGCATCGTTGGAGAA
CCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGCCGGAGGGGGGTGTGCGCACATGATGTGT
GATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGAAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGCTTGCGCATC
CCGTCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGG
AGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCAGCAGCAGGATTGGTAGCACACAG
AGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCGCACGCT
CGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
Found at i:16501175 original size:26 final size:26
Alignment explanation
Indices: 16501146--16501198 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16501136 GTTGACTTAG
*
16501146 GCATACGGAGTTCATTCCC-AGTCTAA
1 GCATACGAAGTTCATTCCCGA-TCTAA
16501172 GCATACGAAGTTCATTCCCGATCTAA
1 GCATACGAAGTTCATTCCCGATCTAA
16501198 G
1 G
16501199 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCGATCTAA
Found at i:16502231 original size:185 final size:185
Alignment explanation
Indices: 16501887--16502282 Score: 454
Period size: 185 Copynumber: 2.1 Consensus size: 185
16501877 GTTGGCTTAG
* * * * *
16501887 GCATACGGAGCTCATTCCCAGTCTAAGATCAGATCGAACTAAGGGTTGCAGCAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGAACTAAGGGTTGCAGCAGCAGGATCAACA
* * * * * *
16501952 GCACACAGAGGAAGACCTGGCAGATCCTCGGCTTGCGCATGCCGCCCCTCTGGCCGGCTGAGCGC
66 ACACACAGAGGAAGACCCGGCAGATCCCCGACTTGCGCATGCCACCCCTCTGGCCGGCTGAGCAC
* * * * * **
16502017 CCGCATGCTCGTTTCGTGGGTTGACTTAGGCATATTGAGTTCATCCCCAGTATAA
131 CCCCACGCTCATTTCATGGGTTAACTTAGGCATACGGAGTTCATCCCCAGTATAA
* * * *
16502072 GCATGCGGAGTTCATTCCCGGTCTAAGATCAAACCGGACTGAGGGTTGCAGCAGCAGGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGAACTAAGGGTTGCAGCAGCAGGATCAACA
** * ** * *
16502137 ACATGCAGTGGGTGACCCGATC-GATCCCCGACTTGCGCAT-CCTACCCTTCTGGCCGGCTGAGC
66 ACACACAGAGGAAGACCCG-GCAGATCCCCGACTTGCGCATGCC-ACCCCTCTGGCCGGCTGAGC
* *
16502200 ACCCCCACGCTCATTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
129 ACCCCCACGCTCATTTCATGGGTTAACTTAGGCATACGGAGTTCATCCCCAGTATAA
* * *
16502257 GCATATGGGGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16502283 AATCGAACTA
Statistics
Matches: 173, Mismatches: 36, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
184 2 0.01
185 170 0.98
186 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.22
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGAACTAAGGGTTGCAGCAGCAGGATCAACA
ACACACAGAGGAAGACCCGGCAGATCCCCGACTTGCGCATGCCACCCCTCTGGCCGGCTGAGCAC
CCCCACGCTCATTTCATGGGTTAACTTAGGCATACGGAGTTCATCCCCAGTATAA
Found at i:16502261 original size:26 final size:26
Alignment explanation
Indices: 16502231--16502282 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16502221 GTTAACTTAG
*
16502231 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
16502257 GCATATGGGGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
16502283 AATCGAACTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:16503164 original size:26 final size:26
Alignment explanation
Indices: 16503134--16503186 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16503124 GTTGACATAG
* *
16503134 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16503160 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16503186 G
1 G
16503187 ATCAAACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16504796 original size:26 final size:26
Alignment explanation
Indices: 16504757--16504809 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16504747 GTTGACTTAG
16504757 GCATACGAAATTCATCCCCAGTCTAA
1 GCATACGAAATTCATCCCCAGTCTAA
* * *
16504783 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAATTCATCCCCAGTCTAA
16504809 G
1 G
16504810 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAATTCATCCCCAGTCTAA
Found at i:16505687 original size:26 final size:26
Alignment explanation
Indices: 16505651--16505703 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16505641 GTTGACTTAG
*
16505651 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
16505677 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
16505703 G
1 G
16505704 ATTGGATCCG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:16506030 original size:896 final size:898
Alignment explanation
Indices: 16504018--16509233 Score: 5822
Period size: 894 Copynumber: 5.9 Consensus size: 898
16504008 GGAAGACTTC
* * *
16504018 ACCGGTAGCATTGGGGTTCCGGCGATTGGGGGGGCCGGGGGGGTGTGTGCACATGATGTGCGATG
1 ACCGATAGCATTGGGGTTCCGGAGATTGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATG
***
16504083 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATATATCATCAAACCTCGAGAACTCACACCCC
66 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
16504148 CTTAAAGA-CAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
131 CTTAAAGAGC-ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * *
16504212 ACACTTTTTTCAAATGGTCACAAAATCTAGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCA
195 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTGCA
* * * * *
16504277 TGCCAAAAAAAATACAGGGATCACGTCTACCGATTTTGGGGCCAAAACTGCTTTCAAAAAAATTT
260 TGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTTCTTTCAAAAAAATTT
* * * * *
16504342 CAAAAAATCTCAAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCA
325 TAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCA
*
16504407 TGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCTTTGG
390 TGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
*** *
16504472 CATGTAGAAATATGAAGATGTGCCTAAACCCACCTATCACCCTATCGATCCACGGCTTGCGCATC
455 CACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * * ** * *
16504537 CCATCTCTCTGGCCGGCGTAGTG-CT--CGCCCGCTCGTCCGCTCGTTTCATCAGTTGGCTTAGG
520 CCGTCTCTCTGACCGGCGTAGTGCCTGCCGTCCGCCCACCCGTTCGTTTCATCGGTTGGCTTAGG
* * *
16504599 CATACGGTGTTCATTCGCAGTCTAAGATCAGACCAGACTGAGGGTTACGACAGCAGGATCGATAG
585 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTT---A-AGCAGGATCGACAG
* *
16504664 AACGTAGAGGGGGACCCAGCCGATCCCCGGCTTGCGCATCCCGCCCCACTGGCCGGCTGAGCGCC
646 AACGCAGAGGGGGACCCAGCCGATCCCCGGCTTACGCATCCCGCCCCACTGGCCGGCTGAGCGCC
*
16504729 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAATTCATCCCCAGTCTAAGCATACGGAGT
711 CGCACACTCGTTTCGTGGGTTGACTTAGGCATACGAAATTCATCCCCAGTCTAAGCATACGGAGT
* * * * * * *
16504794 TCATTCCCAGTCTAAGATCGGACTGGACCGAGTGTTACGGCAGCACATGCTAGGCTCGGGCTTCT
776 TCATTCCCAATCTAAGATCGGACTCGACCAAGGGTTACGGCACCACATGCTAGGCTCGGGCATAT
* * *
16504859 GCTGGTGCCACATTTTTCTCGTCGGGGCACCATCGTCGGAGCATCACCGGATAACCTA
841 GCTGGTGCCACATTTTTCTCGGCGGGGCACCATCGTCGAAGCATCACCGGAGAACCTA
** * * * * * * *
16504917 ACCGACGGCATTAGGGTTCC-AACAATCGGGGGGCCCGGGGGGTGTGCGCACATGATGTGTGATG
1 ACCGATAGCATTGGGGTTCCGGAGATTGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATG
* * * *
16504981 GTTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCAAGAACTCACACCGC
66 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
16505046 CTTAAAGAGCATTTGAGGTTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGA
131 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* *
16505111 CAATTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGTTGAATTTTTTTGTGCAT
196 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTGCAT
* * * *
16505176 GCCAACAAAAATACAATGATCATGTCTACCAAGCTTGGGGCCAAAACTTTTTTCAAAAAAATTTT
261 GCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTTCTTTCAAAAAAATTTT
* ** *
16505241 AAAAAATCCCGAACCGCAAATAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCTTGTCAT
326 AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCAT
* * *
16505306 GAAACTTCACATGAAGGCTTAAGGGGCCATTGCAT-AATTTACAGGCCATAAAAATGGCATTGGC
391 GAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
16505370 ACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
456 ACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* *
16505435 CGTCTCTCTGATCGGCATAGTGCCTGCCCGTCCGCCCACCCGTTCGTTTCATCGGTTGGCTTAGG
521 CGTCTCTCTGACCGGCGTAGTGCCTG-CCGTCCGCCCACCCGTTCGTTTCATCGGTTGGCTTAGG
* * * * * * *
16505500 CATATGGAGTTCATTCCCAGTCTAAGATCAGACCA-ATTCG-TGG-T-AGCAGGTTTGACAGCAT
585 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTAAGCAGGATCGACAGAAC
* ** * *
16505561 GCAGAGGGGGACCCGGTTGATCCTCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
649 GCAGAGGGGGACCCAGCCGATCCCCGGCTTACGCATCCCGCCCCACTGGCCGGCTGAGCGCCCGC
* * *
16505626 ACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
714 ACACTCGTTTCGTGGGTTGACTTAGGCATACGAAATTCATCCCCAGTCTAAGCATACGGAGTTCA
* * *
16505691 TTCCCAATCTAAGATTGGA-TCCGACCAAGGGTTGCGGCACCACATGCTGGGCTCGGGCATATGC
779 TTCCCAATCTAAGATCGGACT-CGACCAAGGGTTACGGCACCACATGCTAGGCTCGGGCATATGC
* * *
16505755 TGGTGTCGCATTTTTCTTCGGCGGGGCACCATCGTCGAAGCATCACCGGAGAACCTG
843 TGGTGCCACATTTTTC-TCGGCGGGGCACCATCGTCGAAGCATCACCGGAGAACCTA
*
16505812 ACCGATAGCATTGGGGTTCCGGTGATTGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATG
1 ACCGATAGCATTGGGGTTCCGGAGATTGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATG
*
16505877 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAGTCACACCCC
66 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * *
16505942 CTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCTTTAAAGTGTCAGAAATGGGGA
131 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * * *
16506007 CACTTTTTTCTAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGTTGACTTTTTTTGTGCGT
196 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTGCAT
** * * *
16506072 ATCAAAAAAAATACAAGGATCATGTCTACCATGTTTGGGGCCAAAAC-TCCTTCTGAAAAAATTT
261 GCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTTCTTTC-AAAAAAATTT
* *
16506136 TAAAAAATCCAGAACCACAAAAAGTTTCAAAAATCGA-GAAAAATAGAAAACGAGTCATCTTGCC
325 TAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATC-ATGAAAAATAGAAAACGAGTCATCTTGCC
* *
16506200 ATGAAACTTCACGTGAAGGCTTAAGGGATCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
389 ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* *
16506265 GCACACAGAAATATGAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCACA
454 GCACACAGAAATATG-AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * *
16506330 TCCCGTCTCTCTCACCGGCGTAGTGCCCGCC-T--GCCCACCCGTTCGTTTCATCGATTGGCTTA
518 TCCCGTCTCTCTGACCGGCGTAGTGCCTGCCGTCCGCCCACCCGTTCGTTTCATCGGTTGGCTTA
* * *** * *
16506392 GGCATGCAGAGTTCATTCCCAGTCTAAGATTC-GACC-GATCCCCGGCTT--GC-GCATC--C--
583 GGCATACGGAGTTCATTCCCAGTCTAAGA-TCAGACCAGA-CTGAGGGTTAAGCAGGATCGACAG
****** * * * * * * * ** * **
16506448 --CGCCCCTTTGG-CCGA-CTGA---AC-GCTT-----TCACG-CTCATTTCGTGGGTTGA-CTT
646 AACGCAGAGGGGGACCCAGCCGATCCCCGGCTTACGCATCCCGCCCCA-CTGGCCGGCTGAGCGC
* * * * * ***** * * * * * *
16506498 CGGCATAC-GGAGTTCATTCCCAGTC-CAAGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-
710 CCGCACACTCG-TTTCGTGGGTTGACTTAGGCATACGAAATTCATCCCCAGTCTAAGCATACGGA
* * ** *
16506557 G---A--CCGAA-CCAAG---GGA-T---------G-T--GGCAGTACATGCTGGGCTCGGGCAT
774 GTTCATTCCCAATCTAAGATCGGACTCGACCAAGGGTTACGGCACCACATGCTAGGCTCGGGCAT
* * *** * * * * * * *
16506600 GTGCTAGTGATGCAATTTTCTTCGTCGGGGCACTATCGCCGGAGCATCGCCGGAGAACCTG
839 ATGCTGGTGCCACATTTTTC-TCGGCGGGGCACCATCGTCGAAGCATCACCGGAGAACCTA
** * * * *
16506661 ACCGACGGCATTGGGGTTCCGGCGA-TCGGGGGGCC-AGGGGGTGTGCGCACATGATGTGTGATG
1 ACCGATAGCATTGGGGTTCCGGAGATTGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATG
* *
16506724 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAAGTCACACCCC
66 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
*
16506789 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGA
131 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * * *
16506854 CACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCAC
196 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTGCAT
* **
16506919 GCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATT-TTTCTGGAAAAATTT
261 GCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTTCTTTC-AAAAAAATTT
** * ** *
16506983 TAAAAAATCCCGAACCATAAAAATTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCA
325 TAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCA
* * * *
16507048 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGTCTTTGG
390 TGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* *
16507113 CACGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
455 CACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * * * * * *
16507178 CTGTCTCTTTGGCCGGCGTAGTGCCCGCC-T--GCCCGCCCGCTCGTTTCGTCGATTGGCTTAGG
520 CCGTCTCTCTGACCGGCGTAGTGCCTGCCGTCCGCCCACCCGTTCGTTTCATCGGTTGGCTTAGG
* * ** *
16507240 TATACGGAGTTCATTCCTAGTCTAAGATTGGACCAGACCGAGGGTTGCAATAGCAGGATCGACAG
585 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTT---A-AGCAGGATCGACAG
* * * * * * * **
16507305 CACGCAGAGAGGGACCCGGTCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGCATGCTGAGCGCC
646 AACGCAGAGGGGGACCCAGCCGATCCCCGGCTTACGCATCCCGCCCCACTGGCCGGCTGAGCGCC
* * * *
16507370 CGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCA-CTCCCAGTCTAAGCATACGGAG
711 CGCACACTCGTTTCGTGGGTTGACTTAGGCATACGAAATTCATC-CCCAGTCTAAGCATACGGAG
* * * * * * * *
16507434 TTCATTACCAGTCTAAGATCGAAC-CAGACCAAGGGTTGCAGCAGCACATCCTGGGCTCGGGCAT
775 TTCATTCCCAATCTAAGATCGGACTC-GACCAAGGGTTACGGCACCACATGCTAGGCTCGGGCAT
* * * * * * * * *
16507498 GTGCTGATGTCGCATTTTTCTTCGTCGTGGCACCATCG-CCAGAGCATCGCCGGAGAACCTG
839 ATGCTGGTGCCACATTTTTC-TCGGCGGGGCACCATCGTCGA-AGCATCACCGGAGAACCTA
** * * * * *
16507559 ACCGACGGCATTGGGGTTTCGGCGATCGGGGGGGTCAGGAGGGGGTGTGCGCACATGATGTGTGA
1 ACCGATAGCATTGGGGTTCCGGAGATTGGGGGGG-CCGG-GGGGGTGTGCGCACATGATGTGCGA
**
16507624 TGGGTAATGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
64 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
*
16507689 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGT
129 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* **
16507754 GACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCAGAATTTTTTTGTGC
194 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTGC
* * * * * *
16507819 ATACCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCAAAAAC-TCCTTCTGAAAAAGT
259 ATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTTCTTTC-AAAAAAAT
* * * *
16507883 TTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
323 TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGC
** * *
16507948 CATGAAACTTCACGCGATGGCTTAAGGGACCATTGTATGAATTTACAAGCTATAAAAATGGCATT
388 CATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
** ** *
16508013 GGCATGCAGAAATATGAAGATGTGCCTAAATGCACCTACCACCCTATCGATCCAAGGCTTGCGCA
453 GGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * ** * *
16508078 TCTCGTCTCTCTGGCTGAAGTAGTGCCCG-C-T-CG----CCCGCTCGTTTCATCGGTTGGCTT-
518 TCCCGTCTCTCTGACCGGCGTAGTGCCTGCCGTCCGCCCACCCGTTCGTTTCATCGGTTGGCTTA
* * * *
16508135 GGACATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATTGAGGGTTGCGGCAGCAAGATCGG
583 GG-CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTT----AAGCAGGATCGA
* * * * * * ** * *
16508200 TAGCATGTAGAGGGGGACCGA-TCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCAGCTGAGC
643 CAGAACGCAGAGGGGGACCCAGCCGATCCCCGGCTTACGCATCCCGCCCCACTGGCCGGCTGAGC
* * * * * *
16508264 GCCCGTACGCTCGTTTCGTGGGTTGACTTAGGTATACGGAGTTCATTCCCAGTCTAAGCATACGG
708 GCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGAAATTCATCCCCAGTCTAAGCATACGG
* * * * * * *
16508329 AGTTCATTCCCAGTCTAAGATCAGA-TCGGATCAAGGGTTACAGTAGCACATGCTGGGCTCGGGC
773 AGTTCATTCCCAATCTAAGATCGGACTC-GACCAAGGGTTACGGCACCACATGCTAGGCTCGGGC
** * ** * * * * *** *
16508393 AGGTGCTGGTGTCGTATTTTTGTTCGTCGAGGCACCATCGTCGTAGCATCGTTGGAGAACCTG
837 ATATGCTGGTGCCACATTTTT-CTCGGCGGGGCACCATCGTCGAAGCATCACCGGAGAACCTA
* * * * * * * * * *
16508456 ATCGA-CGACATTAGGGTTCCGGCGA-TCGGGGGTCCGGGGGGGTGTGTGTACATGATCTGCAAT
1 ACCGATAG-CATTGGGGTTCCGGAGATTGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
* * * *
16508519 GGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTTTCCCTCATCAAACCTGGAGAACTCACACAC
65 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * * *
16508584 CCTTAAAGAGCATTTGAGATTTTACAGGTTCGCCGCTAGTAGCAATTAAAGTGTCTGAAATGGGG
130 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
*
16508649 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATGTTTTTGTGCA
195 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTGCA
* * * * * *
16508714 TGCCAACAAAAATACAAGGATCATGCCTGCCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
260 TGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTTCTTTCAAAAAAATTT
* * * *
16508779 TAAAAATTCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
325 TAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCA
* *
16508844 TGAAGCTTCACATGAAGGCTTAAGGGGCCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
390 TGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* *
16508909 CACACAGAAATATAAAGATGTGCCTAAACCCACTTACCACCCTATCGATCCACGGCTTGCGCATC
455 CACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * *
16508974 CCGTCTCTCT-AGCCGGCGTA--G--TG-C--CCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAG
520 CCGTCTCTCTGA-CCGGCGTAGTGCCTGCCGTCCGCCCACCCGTTCGTTTCATCGGTTGGCTTAG
* ** * * * * *
16509031 GCATATGGAGTTCATTCCCAGTCTAAGATTGGATCGGACTGAGGGTTGCAGTAGTAGGATTGGCA
584 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTT--A--AGCAGGATCGACA
* ** * * ** * * * * *
16509096 GCACATAAAGTGGGACCTGGTCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGC
645 GAACGCAGAGGGGGACCCAGCCGATCCCCGGCTTACGCATCCCGCCCCACTGGCCGGCTGAGCGC
* * * * * * *
16509161 CCGAACGCTCGTTTCGCGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
710 CCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGAAATTCATCCCCAGTCTAAGCATACGGAG
16509226 TTCATTCC
775 TTCATTCC
16509234 TAGACTAAGA
Statistics
Matches: 3717, Mismatches: 495, Indels: 214
0.84 0.11 0.05
Matches are distributed among these distances:
845 1 0.00
846 137 0.04
847 397 0.11
848 10 0.00
849 96 0.03
851 1 0.00
852 3 0.00
853 4 0.00
855 1 0.00
859 5 0.00
860 2 0.00
861 2 0.00
862 4 0.00
864 1 0.00
865 8 0.00
866 4 0.00
868 1 0.00
870 10 0.00
871 15 0.00
872 27 0.01
873 3 0.00
874 3 0.00
875 30 0.01
876 16 0.00
877 11 0.00
879 1 0.00
881 2 0.00
882 8 0.00
883 1 0.00
885 2 0.00
886 3 0.00
887 2 0.00
888 4 0.00
890 4 0.00
892 3 0.00
893 1 0.00
894 791 0.21
895 181 0.05
896 364 0.10
897 377 0.10
898 617 0.17
899 24 0.01
900 5 0.00
901 67 0.02
902 468 0.13
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (898 bp):
ACCGATAGCATTGGGGTTCCGGAGATTGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATG
GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTGCAT
GCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTTCTTTCAAAAAAATTTT
AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCAT
GAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
CGTCTCTCTGACCGGCGTAGTGCCTGCCGTCCGCCCACCCGTTCGTTTCATCGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTAAGCAGGATCGACAGAACGC
AGAGGGGGACCCAGCCGATCCCCGGCTTACGCATCCCGCCCCACTGGCCGGCTGAGCGCCCGCAC
ACTCGTTTCGTGGGTTGACTTAGGCATACGAAATTCATCCCCAGTCTAAGCATACGGAGTTCATT
CCCAATCTAAGATCGGACTCGACCAAGGGTTACGGCACCACATGCTAGGCTCGGGCATATGCTGG
TGCCACATTTTTCTCGGCGGGGCACCATCGTCGAAGCATCACCGGAGAACCTA
Found at i:16507434 original size:26 final size:26
Alignment explanation
Indices: 16507398--16507450 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16507388 GTTGACTTAG
*
16507398 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTACCAGTCTAA
*
16507424 GCATACGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTCACTACCAGTCTAA
16507450 G
1 G
16507451 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCACTACCAGTCTAA
Found at i:16508326 original size:26 final size:26
Alignment explanation
Indices: 16508297--16508347 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
16508287 TGACTTAGGT
16508297 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
16508323 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
16508348 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:16509226 original size:26 final size:26
Alignment explanation
Indices: 16509190--16509242 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16509180 GTTGACTTAG
*
16509190 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGACTAA
*
16509216 GCATACGGAGTTCATTCCTAGACTAA
1 GCATACGGAGTTCATTCCCAGACTAA
16509242 G
1 G
16509243 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGACTAA
Found at i:16510042 original size:58 final size:58
Alignment explanation
Indices: 16509741--16510127 Score: 592
Period size: 57 Copynumber: 6.7 Consensus size: 58
16509731 TTTTCTGTAG
* *
16509741 GGAAAATTGATACTTTCAACTTTT-CTCAAAAATCCTTTTTCTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAA---TGTTT-TTTTGAAAATTTATTTTTAA
* * *
16509802 -GAAAATTGATACTTTCAATTTTTCCCCAAAAATATTTTTTAG-AAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATGTTTTTTTGAAAATTTATTTTTAA
16509858 GGAAAATTGATACTTTCAACTTTT-CCCAAAAATG-TTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATGTTTTTTTGAAAATTTATTTTTAA
* *
16509914 GGAAAATTGATACTTTCAACTTTTCCCCAAAAAT-ATTTTTTGGAAATTTATTTTT-A
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATGTTTTTTTGAAAATTTATTTTTAA
16509970 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATGTTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATGTTTTTTTGAAAATTTATTTTTAA
*
16510028 GAAAAATTGATACTTTCAACTTTT-CCCAAAAATGTTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATGTTTTTTTGAAAATTTATTTTTAA
*
16510085 CGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTT
1 -GGAAAATTGATACTTTCAACTTTTCCCCAAAAATGTTTTTTT
16510128 ATTTTTATTT
Statistics
Matches: 304, Mismatches: 13, Indels: 20
0.90 0.04 0.06
Matches are distributed among these distances:
55 6 0.02
56 96 0.32
57 106 0.35
58 51 0.17
59 16 0.05
60 22 0.07
61 7 0.02
ACGTcount: A:0.35, C:0.12, G:0.07, T:0.45
Consensus pattern (58 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATGTTTTTTTGAAAATTTATTTTTAA
Found at i:16510135 original size:57 final size:56
Alignment explanation
Indices: 16509741--16510137 Score: 525
Period size: 56 Copynumber: 6.9 Consensus size: 56
16509731 TTTTCTGTAG
* *
16509741 GGAAAATTGATACTTTCAACTTTT-CTCAAAAATCCTTTTTCTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAA---TATTT-TTTT--AAATTTATTTTTAA
* *
16509802 -GAAAATTGATACTTTCAATTTTTCCCCAAAAATATTTTTTAGAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTT-TAAATTTATTTTTAA
* *
16509858 GGAAAATTGATACTTTCAACTTTT-CCCAAAAATGTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTT-TAAATTTATTTTTAA
*
16509914 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTTT-A
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTT-TAAATTTATTTTTAA
*
16509970 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATGTTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTT--AAATTTATTTTTAA
* *
16510028 GAAAAATTGATACTTTCAACTTTT-CCCAAAAATGTTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTT--AAATTTATTTTTAA
**
16510085 CGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTATTTTTATTT
1 -GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTAAATTTATTT
16510138 AAAGAAAATA
Statistics
Matches: 310, Mismatches: 17, Indels: 22
0.89 0.05 0.06
Matches are distributed among these distances:
56 108 0.35
57 106 0.34
58 51 0.16
59 16 0.05
60 22 0.07
61 7 0.02
ACGTcount: A:0.35, C:0.12, G:0.07, T:0.46
Consensus pattern (56 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTAAATTTATTTTTAA
Found at i:16510631 original size:19 final size:19
Alignment explanation
Indices: 16510577--16510632 Score: 58
Period size: 20 Copynumber: 2.9 Consensus size: 19
16510567 AGAACACTAG
* *
16510577 TGGAATTTTCATCGGATTC
1 TGGAAATTTCATCGGAATC
* *
16510596 TGGAAAATGTCACCGGAATC
1 TGG-AAATTTCATCGGAATC
*
16510616 TGGAAATTTCGTCGGAA
1 TGGAAATTTCATCGGAA
16510633 GATCATCGAT
Statistics
Matches: 29, Mismatches: 7, Indels: 2
0.76 0.18 0.05
Matches are distributed among these distances:
19 14 0.48
20 15 0.52
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (19 bp):
TGGAAATTTCATCGGAATC
Found at i:16511131 original size:18 final size:18
Alignment explanation
Indices: 16511110--16511144 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
16511100 AGGAAAAGAA
*
16511110 AAAAAATAATCAGATAAT
1 AAAAAAGAATCAGATAAT
*
16511128 AAAAAAGGATCAGATAA
1 AAAAAAGAATCAGATAA
16511145 AATTAACAGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.66, C:0.06, G:0.11, T:0.17
Consensus pattern (18 bp):
AAAAAAGAATCAGATAAT
Found at i:16511209 original size:3 final size:3
Alignment explanation
Indices: 16511201--16511229 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
16511191 TATTACAAAA
16511201 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
16511230 ATATATAACT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:16511370 original size:36 final size:35
Alignment explanation
Indices: 16511330--16511411 Score: 119
Period size: 36 Copynumber: 2.3 Consensus size: 35
16511320 AATTGGCCTT
*
16511330 ACCCATTTGGGCCAGGCCCAATTGATCTGGGCCTGG
1 ACCCAATTGGGCCAGGCCCAATTGAT-TGGGCCTGG
** *
16511366 ACCCAATTGGGTTAGGCCCAATTGATTGGTCCTGG
1 ACCCAATTGGGCCAGGCCCAATTGATTGGGCCTGG
16511401 ACCCAATTGGG
1 ACCCAATTGGG
16511412 TGTCTACACT
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
35 19 0.45
36 23 0.55
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (35 bp):
ACCCAATTGGGCCAGGCCCAATTGATTGGGCCTGG
Found at i:16511407 original size:35 final size:36
Alignment explanation
Indices: 16511343--16511412 Score: 124
Period size: 35 Copynumber: 2.0 Consensus size: 36
16511333 CATTTGGGCC
16511343 AGGCCCAATTGATCTGGGCCTGGACCCAATTGGGTT
1 AGGCCCAATTGATCTGGGCCTGGACCCAATTGGGTT
*
16511379 AGGCCCAATTGAT-TGGTCCTGGACCCAATTGGGT
1 AGGCCCAATTGATCTGGGCCTGGACCCAATTGGGT
16511413 GTCTACACTG
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
35 20 0.61
36 13 0.39
ACGTcount: A:0.20, C:0.24, G:0.30, T:0.26
Consensus pattern (36 bp):
AGGCCCAATTGATCTGGGCCTGGACCCAATTGGGTT
Found at i:16511526 original size:18 final size:17
Alignment explanation
Indices: 16511503--16511571 Score: 70
Period size: 17 Copynumber: 3.9 Consensus size: 17
16511493 AACATTGTCA
16511503 TTTTTTGTT-TTTTGTATG
1 TTTTTTGTTGTTTT-T-TG
16511521 TTTTTTTGTATGTTTTTTG
1 -TTTTTTGT-TGTTTTTTG
*
16511540 TTTTTTGTTTTTTTTTG
1 TTTTTTGTTGTTTTTTG
16511557 TTTTTT-TGTGTTTTT
1 TTTTTTGT-TGTTTTT
16511572 GACTAAAGCT
Statistics
Matches: 45, Mismatches: 2, Indels: 8
0.82 0.04 0.15
Matches are distributed among these distances:
16 1 0.02
17 20 0.44
18 8 0.18
19 10 0.22
20 2 0.04
21 4 0.09
ACGTcount: A:0.03, C:0.00, G:0.14, T:0.83
Consensus pattern (17 bp):
TTTTTTGTTGTTTTTTG
Found at i:16511527 original size:12 final size:12
Alignment explanation
Indices: 16511510--16511565 Score: 62
Period size: 12 Copynumber: 4.7 Consensus size: 12
16511500 TCATTTTTTG
16511510 TTTTTTGTATGT
1 TTTTTTGTATGT
16511522 TTTTTTGTATGTT
1 TTTTTTGTATG-T
* *
16511535 TTTTGTTTTTTGT
1 TTTT-TTGTATGT
16511548 TTTTTT-T-TGT
1 TTTTTTGTATGT
16511558 TTTTTTGT
1 TTTTTTGT
16511566 GTTTTTGACT
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
10 9 0.23
11 2 0.05
12 13 0.33
13 10 0.26
14 5 0.13
ACGTcount: A:0.04, C:0.00, G:0.14, T:0.82
Consensus pattern (12 bp):
TTTTTTGTATGT
Found at i:16511551 original size:8 final size:8
Alignment explanation
Indices: 16511503--16511572 Score: 59
Period size: 8 Copynumber: 7.9 Consensus size: 8
16511493 AACATTGTCA
16511503 TTTTTTGTT
1 TTTTTTG-T
16511512 TTTTGTATGT
1 TTTT-T-TGT
16511522 TTTTTTGTAT
1 TTTTTTG--T
16511532 GTTTTTTGT
1 -TTTTTTGT
*
16511541 TTTTTGTTT
1 TTTTT-TGT
16511550 TTTTTTGT
1 TTTTTTGT
16511558 TTTTTTGT
1 TTTTTTGT
*
16511566 GTTTTTG
1 TTTTTTG
16511573 ACTAAAGCTC
Statistics
Matches: 52, Mismatches: 3, Indels: 13
0.76 0.04 0.19
Matches are distributed among these distances:
8 23 0.44
9 13 0.25
10 7 0.13
11 9 0.17
ACGTcount: A:0.03, C:0.00, G:0.16, T:0.81
Consensus pattern (8 bp):
TTTTTTGT
Found at i:16511568 original size:10 final size:10
Alignment explanation
Indices: 16511503--16511571 Score: 67
Period size: 9 Copynumber: 7.4 Consensus size: 10
16511493 AACATTGTCA
16511503 TTTTTTGT-T
1 TTTTTTGTGT
* *
16511512 TTTTGTATGT
1 TTTTTTGTGT
*
16511522 TTTTTTGTAT
1 TTTTTTGTGT
*
16511532 GTTTTT-TG-
1 TTTTTTGTGT
16511540 TTTTTTGT-T
1 TTTTTTGTGT
16511549 TTTTTT-TGT
1 TTTTTTGTGT
16511558 TTTTTTGTGT
1 TTTTTTGTGT
16511568 TTTT
1 TTTT
16511572 GACTAAAGCT
Statistics
Matches: 47, Mismatches: 8, Indels: 9
0.73 0.12 0.14
Matches are distributed among these distances:
8 6 0.13
9 21 0.45
10 20 0.43
ACGTcount: A:0.03, C:0.00, G:0.14, T:0.83
Consensus pattern (10 bp):
TTTTTTGTGT
Found at i:16511668 original size:42 final size:42
Alignment explanation
Indices: 16511579--16512124 Score: 883
Period size: 42 Copynumber: 13.1 Consensus size: 42
16511569 TTTGACTAAA
* *
16511579 GCTCCTCTAAACAGAGGCTCAACGACTTTG-AAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
* *
16511620 GCTCCTCTAAATAGGGGCACCACGACTTTGAAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
16511662 GCTCCTCTAAACAGAGGCACCACGACTTTTG--AAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGAC-TTTGAAAAAGTAAATT
16511703 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
16511745 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAA-TAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
*
16511786 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
*
16511828 GCTCCTCTAAACAGAGGCACCACGACTTT-AAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
*
16511869 GCTCCTCTAAATAGAGGCACCACGACTTTGGAAAAA-TAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTT-GAAAAAGTAAATT
* * *
16511911 GCTCCTCTAAACAGAGGTACCATGACTTTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
* *
16511953 GCTCCTCTAAACAGAGGCACCATGACTTTG-GAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
*
16511994 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
*
16512036 GCTCCTCTAAACAGAGGTACCACGACTTTG-AAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
*
16512077 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
16512119 GCTCCT
1 GCTCCT
16512125 TGGCAATCAT
Statistics
Matches: 476, Mismatches: 19, Indels: 19
0.93 0.04 0.04
Matches are distributed among these distances:
40 4 0.01
41 226 0.47
42 237 0.50
43 9 0.02
ACGTcount: A:0.37, C:0.23, G:0.17, T:0.24
Consensus pattern (42 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
Found at i:16512151 original size:83 final size:83
Alignment explanation
Indices: 16511579--16512124 Score: 868
Period size: 83 Copynumber: 6.6 Consensus size: 83
16511569 TTTGACTAAA
* * * *
16511579 GCTCCTCTAAACAGAGGCTCAACGACTTTG-AAAAGTAAATTGCTCCTCTAAATAGGGGCACCAC
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
16511643 GACTTTGAAAAAGTAAATT
66 GACTTTG-AAAAGTAAATT
16511662 GCTCCTCTAAACAGAGGCACCACGACTTTTG--AAAGTAAATTGCTCCTCTAAACAGAGGCACCA
1 GCTCCTCTAAACAGAGGCACCACGAC-TTTGAAAAAGTAAATTGCTCCTCTAAACAGAGGCACCA
16511725 CGACTTTGAAAAAGTAAATT
65 CGACTTTG-AAAAGTAAATT
16511745 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAA-TAAATTGCTCCTCTAAACAGAGGCACCAC
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
*
16511809 GACTTTGAAAAATTAAATT
66 GACTTTG-AAAAGTAAATT
* *
16511828 GCTCCTCTAAACAGAGGCACCACGACTTT-AAAAAATAAATTGCTCCTCTAAATAGAGGCACCAC
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
*
16511892 GACTTTGGAAAAATAAATT
66 GACTTT-GAAAAGTAAATT
* * * *
16511911 GCTCCTCTAAACAGAGGTACCATGACTTTGGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCAT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
*
16511976 GACTTTGGAAAGTAAATT
66 GACTTTGAAAAGTAAATT
* *
16511994 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCTCCTCTAAACAGAGGTACCAC
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
16512059 GACTTTGAAAAGTAAATT
66 GACTTTGAAAAGTAAATT
*
16512077 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATTAAATTGCTCCT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATTGCTCCT
16512125 TGGCAATCAT
Statistics
Matches: 435, Mismatches: 22, Indels: 12
0.93 0.05 0.03
Matches are distributed among these distances:
82 9 0.02
83 381 0.88
84 45 0.10
ACGTcount: A:0.37, C:0.23, G:0.17, T:0.24
Consensus pattern (83 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
GACTTTGAAAAGTAAATT
Found at i:16513143 original size:15 final size:16
Alignment explanation
Indices: 16513123--16513158 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
16513113 TGAGTCCTCC
16513123 TTTTTCACTTTTTC-T
1 TTTTTCACTTTTTCAT
*
16513138 TTTTTCATTTTTTCAT
1 TTTTTCACTTTTTCAT
16513154 TTTTT
1 TTTTT
16513159 TTAAATTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 13 0.68
16 6 0.32
ACGTcount: A:0.08, C:0.14, G:0.00, T:0.78
Consensus pattern (16 bp):
TTTTTCACTTTTTCAT
Found at i:16513158 original size:8 final size:8
Alignment explanation
Indices: 16513123--16513200 Score: 70
Period size: 8 Copynumber: 9.6 Consensus size: 8
16513113 TGAGTCCTCC
*
16513123 TTTTTCAC
1 TTTTTCAT
16513131 TTTTTC-T
1 TTTTTCAT
16513138 TTTTTCAT
1 TTTTTCAT
16513146 TTTTTCATTT
1 TTTTTCA--T
*
16513156 TTTTTAAAT
1 TTTTT-CAT
*
16513165 TTTTTAAT
1 TTTTTCAT
*
16513173 TTTTT-AA
1 TTTTTCAT
*
16513180 TTTTTAAT
1 TTTTTCAT
16513188 TTTTTCAT
1 TTTTTCAT
16513196 TTTTT
1 TTTTT
16513201 TCAAGCATAG
Statistics
Matches: 60, Mismatches: 5, Indels: 10
0.80 0.07 0.13
Matches are distributed among these distances:
7 12 0.20
8 35 0.58
9 6 0.10
10 6 0.10
11 1 0.02
ACGTcount: A:0.17, C:0.08, G:0.00, T:0.76
Consensus pattern (8 bp):
TTTTTCAT
Found at i:16513188 original size:23 final size:24
Alignment explanation
Indices: 16513156--16513200 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
16513146 TTTTTCATTT
16513156 TTTTTAAATTTTTTAATTTTTTAA
1 TTTTTAAATTTTTTAATTTTTTAA
*
16513180 TTTTT-AATTTTTTCATTTTTT
1 TTTTTAAATTTTTTAATTTTTT
16513201 TCAAGCATAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 15 0.75
24 5 0.25
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.76
Consensus pattern (24 bp):
TTTTTAAATTTTTTAATTTTTTAA
Found at i:16513192 original size:15 final size:15
Alignment explanation
Indices: 16513155--16513199 Score: 63
Period size: 15 Copynumber: 2.9 Consensus size: 15
16513145 TTTTTTCATT
16513155 TTTTTTAAATTTTTTAA
1 TTTTTT-AA-TTTTTAA
16513172 TTTTTTAATTTTTAA
1 TTTTTTAATTTTTAA
*
16513187 TTTTTTCATTTTT
1 TTTTTTAATTTTT
16513200 TTCAAGCATA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
15 19 0.70
16 2 0.07
17 6 0.22
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.76
Consensus pattern (15 bp):
TTTTTTAATTTTTAA
Found at i:16523687 original size:57 final size:58
Alignment explanation
Indices: 16523590--16523866 Score: 416
Period size: 57 Copynumber: 4.7 Consensus size: 58
16523580 TTTTGTGTAG
16523590 GGAAAATTGATACTTTCAACTTTTT-CCAAAAATATTTTTTTTG-AAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTTCCCAAAAATA-TTTTTTTGAAAATTTATTTTTAA
* * *
16523647 GGAAAATTGATACTTTCAAGTTTTTCTCAAAAATCCTTTTTCTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTTCCCAAAAA---TATTT-TTTTGAAAATTTATTTTTAA
*
16523709 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTTTGAAAATTTATTTTTAA
*
16523767 GGAAAATTGATACTTTCAAC-TTTTCCCAAAAATGTTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTTTGAAAATTTATTTTTAA
* *
16523824 AGAAAATTGATACTTTCAACTTTTCCCCAAAAATTATTTTTTT
1 GGAAAATTGATACTTTCAACTTTTTCCCAAAAA-TATTTTTTT
16523867 TTTAATTTTT
Statistics
Matches: 200, Mismatches: 12, Indels: 14
0.88 0.05 0.06
Matches are distributed among these distances:
57 78 0.39
58 57 0.28
59 12 0.06
60 3 0.01
61 6 0.03
62 44 0.22
ACGTcount: A:0.35, C:0.12, G:0.07, T:0.47
Consensus pattern (58 bp):
GGAAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTTTGAAAATTTATTTTTAA
Found at i:16523943 original size:18 final size:19
Alignment explanation
Indices: 16523907--16523944 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
16523897 AATAAAAGTG
* *
16523907 AAAATAAATAAAGATTAAA
1 AAAATAAAGAAAGAGTAAA
16523926 AAAATAAAGAAA-AGTAAA
1 AAAATAAAGAAAGAGTAAA
16523944 A
1 A
16523945 CAAAAATAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.76, C:0.00, G:0.08, T:0.16
Consensus pattern (19 bp):
AAAATAAAGAAAGAGTAAA
Found at i:16526027 original size:26 final size:26
Alignment explanation
Indices: 16525991--16526043 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16525981 GTTGACTTAG
16525991 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16526017 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16526043 G
1 G
16526044 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16527478 original size:901 final size:899
Alignment explanation
Indices: 16525153--16533922 Score: 11796
Period size: 900 Copynumber: 9.8 Consensus size: 899
16525143 GGTGTCTACA
* *
16525153 GGTTGCGACAGCACATGCTTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGCAC
1 GGTTGCGACAGCACATGC-TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCAC
* ** * *
16525218 CATCACCGGAGCATCGTCGGAGAACCTGACCGATGGCATTAGGGTTCCGGCAATCGGGGGGGCCG
65 CATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCC-
* *
16525283 GGAGGGGGGTGTGCGCACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATACTGGCCCCCTA
128 -G-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * * *
16525348 TCCCTCATCAAACTTTGAGAACTCACA-CCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTA
191 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * *
16525412 CCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCGCAAAATCTTGTACAA
256 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * *
16525477 TTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATTACGTCTACCATGT
321 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * * * **
16525542 TTGGGGCGAAAAATCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATC
386 TTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
* * *
16525607 GTGAAAAATAAAAAATGGGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
451 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
16525672 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
516 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
*
16525737 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCTCCCG
581 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG----CCCG
* * * *
16525802 CCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGGTCAAACC
642 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * * ** ** *
16525867 AGACTGAGTGTTGCGGTAGTAGGATCGGCAGCACGCAGAGGGGGACTTGGCCGATCCCCGGGTTG
707 AGACTGAGGGTTGCGGTAGCAGGATCGACAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTG
*
16525932 CGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
772 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* *
16525997 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGGG
837 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAG
* * * * * * *
16526060 GGATGC-AGCAGCACATGCTGAGCTCGAGAATGTGCTGGTGCCGCATTTTTCTTCACTGGCGCAC
1 GGTTGCGA-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCAC
* * * * *
16526124 CATCACCAGAGCGTCGTCGGAGAACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGGCCG
65 CATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCCG
* * * * *
16526189 GGGGGGTTTTACGCACACGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCACCTATC
129 GGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * * *
16526254 CCTCATCATACCTCAAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCC
193 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
16526319 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
258 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * *
16526384 CAAGTTTTTAGCTGAATCTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTT
323 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* ** ** * *
16526449 GGGGCCAAAACTCCATCTGAAAAAATTTTAAAAAAT-CATAATCCGTAAAGAGTTTCGAAAATCG
388 GGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAA-CCGTAAAAAGTTTCAAAAATCG
*
16526513 TGAAAAAAAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
452 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
16526578 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
517 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * *
16526643 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTTTCTGGCCGGCGTTGTGCCTGCCCTCCCGC
582 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGC
* * * * *
16526708 CCGCTCATTTAGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAAAAT
647 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT
* * *
16526773 GAGGGTTGCGGCAGTAGGATCGAAAGCACGTAGAGGGGGACCCGATCGAT-CCCGGCTTGCGCAT
712 GAGGGTTGCGGTAGCAGGATCGACAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCAT
** * * *
16526837 CAAGCCCCTCTGGCTGGCTGAGCGCCCGTACGCTCGTTCCGTGGGTTGACTTAGGCATACGGAGT
777 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* ** * *
16526902 CCATTCCCAGTCTAAGCATACAAAGTTCATTCCTAGTCGAAGATCGGACCGGACCGAG
842 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAG
* ** *
16526960 GGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTTACCGAGGCACC
1 GGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACC
* * * ** * *
16527025 ATCACCAGAGTATCACCGGAGAACCTGACCGGTGGCATTGGGGTTCTGGCGATCGGGGGGCCGGG
66 ATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGG
** * * * * * *
16527090 GGGGTGTGCGCTGATGATGTGCGATAGGTGTTGGTACTTGGGCCTTATATTGGCCCACTATCTCG
131 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
16527155 CATCAAACCTCGAGAACTCACACCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
196 CATCAAACCTCGAGAACTCACA-CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
*
16527220 TAGCCATTAAAGTGTCT-AAAGTAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
260 TAGCCATTAAAGTGTCTGAAA-TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * * * *
16527284 GAGTTTTTAGTTGAATTTATTTGTGCAAGGCAACAAAAATATACACGGATCACGTCTACCAAGTT
324 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC-AAAA-ATACAAGGATCACGTCTACCAAGTT
* * * *
16527349 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAGGTTTCAAAAATCG
387 TGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCG
* * *
16527414 TAAAAAATAGAAAACAAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
452 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* *** *
16527479 GAATTTAGAAGCCATAAAAATGGCATTGGCACATAGAAATATAAAGATGTGCCTAAACCCACCTA
517 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* *
16527544 CCACCCTATCGATCCACGGCTTGCGCATCCCTTCTCTCTGGCCGGCGTAGT--------GCCCAC
582 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGC
* *
16527601 CCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGCTT-ATTCCTCA-TCTAAGATCAGATCAGA
647 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG-TTCATTCC-CAGTCTAAGATCAGACCAGA
* * * * ** *
16527664 CCGAGAGTTACAGTAGCAGGATCGACAGCACACAGAGGGGGACCCGATCGATCCTCGGCTTGCGC
710 CTGAGGGTTGCGGTAGCAGGATCGACAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGC
** *
16527729 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACTTTCGTTTCGTGGGTTGACTTAGGCATATGGA
775 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
16527794 GTTCATTCCCAG--T---C-TA---AG---------A-TCT--GAT-----CGGACCGAG
840 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAG
* * * *
16527828 GGTTGC-AGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCTGAATTTTTCTTCACCGGGGCAC
1 GGTTGCGA-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCAC
** * * * * * * *
16527892 CATCGCCCAAACATAGTTGGAGAACCTGACCGACGGCATTAGGGTTCCCGCGATCGGGGGGTCGG
65 CATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGG
* * *
16527957 GGGGGTGTGCGCTCATGATGTGCGATGGGTGCTGGTGCTTGGCCCTTATATTGGACCCCTATCCC
130 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
*
16528022 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTCGCTGCCAG
195 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* * *
16528087 TGGCCATTAAAGCGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAATTCG
260 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * * * *
16528152 AGTTTTTAGCTAAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCATGTTTTG
325 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
** * * * *
16528217 GGTGAAAAATCCTTCCCAAAAAAGTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGA
390 GGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGA
* * *
16528282 AAAATAGAAAACGAGTCGTCTTACCATGAAACTCCACGTGAAGGCTTAAGGGGCCATTGTATGAA
455 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
** *
16528347 TTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACGCACCTACCA
520 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * * * *
16528412 CCCTATCGATCCACGGCTTGCGGATCCCATCTATCTGGTCGGCGTAGTGACCGCCCACCCGTCCG
585 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCGCCCGCCCG
* * ** *
16528477 CCCACTTC-TTTCGTCGGTTGGCTCAGGCATACGGAGTTCATTCCCAGTCTAAGATCCTATCAGA
646 CCCGC-TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
** * *
16528541 -TCGAGGGTTGCGGTAGCAGGATCGTTAGCACGTAGAGGGGGACCC-AGTCGATCCCCAGCTTAC
710 CT-GAGGGTTGCGGTAGCAGGATCGACAGCACGTAGAGGGGGACCCGA-TCGATCCCCGGCTTGC
* * * * *
16528604 GCATCCCG-CCCTCTGGTCGGCTGAGCGCCTGTACGCTTGTTTCGTGGGTTGACTTAGGCATACA
773 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * * *
16528668 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCCAGGATCAGATCGGACCGAG
838 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAG
* **
16528730 GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACC
1 GGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACC
* * * *
16528795 ATCGCCCGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTTCGGGGATCGAGGGGGCCGG
66 ATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCG-GGGGGCCGG
*
16528860 GGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
130 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
*
16528925 TCATCAAACCTCGAGAACTCACATCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
195 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
*
16528990 TAGCCATTAAAGTGTCTGAAATGGGGACACTTGTTTCAAATGGTCACAAAATCTTGTACACTTTC
260 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TTC
* * * * * * *
16529055 -AGTTTTTCGATGAATGCTTTTT-TGCGTGCCAACAAAAATACAAGGATTATGTCTTCCAAGTTT
324 GAGTTTTTAGCTGAAT-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * * * * *
16529118 GGGGCCAAAA-TGCATTCTAAAAAAATTTTAAAAAGTCCCGGACCGCAAAAAGTTTCAAAAATAG
388 GGGGCCAAAACT-CCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCG
* *
16529182 TGAAAAATAAAAAACGAGTCGGCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
452 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* **
16529247 GAATTTACAAGCCAAAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTA
517 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * * * *
16529312 CCACCGTATCGATCCACGGTTTGCGCATCCCGACTCTCTGGTCGACGTAGTGCCCGCCCGCCTG-
582 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGC
* * *
16529376 -C-C-CGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACC
647 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT
* * * * * * * * * * ** *
16529438 AATGGTTGCCGCAACAAGATTGGCAGCATGTAGAGGGGGACGCGGCCGATCCCCGACTTGCGCAT
712 GAGGGTTGCGGTAGCAGGATCGACAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCAT
* * * * *
16529503 CCCGCCCCTCTGTCCGGCTGAGCGCCCCGCACACTTGTTTCGTCGGTTGACTTAGGCATACAGAG
777 CCCGCCCCTCTGGCCGGCTGAGCG-CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
* * * *
16529568 TTCATTCCCCGTCTAAGCATACAGAGTTCTTTCCCAGTCTAAGATCGGACCAGACCGAG
841 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAG
* * * * *
16529627 GGTTGAGGCAGCACATGCTGGGCTCGGCCATGTGCT-GTGCCGCATTTTTCTTCGTCGAGGCACC
1 GGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACC
* * *
16529691 ATCGCTGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGAGGCC-G
66 ATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGG-GGCCGG
* * * *
16529755 GGGGGTGTGCGCACAAGATGTCCGATAGGTG-TGGGTACTTAGCCCTTATATTGG-CCCCTATCC
130 GGGGGTGTGCGCACATGATGTGCGATGGGTGCT-GGTACTTGGCCCTTATATTGGCCCCCTATCC
*
16529818 CTCATCAAACCTCGAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
194 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* *
16529883 GTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCAC-AAATCTTGTACACTTT
259 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * * *
16529947 GAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACATGGATCACGTCTACCAAGTTTA
324 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * * ** **
16530012 AGGCCAAAACTCCTTTCGAAAAAA-TTTAAAAAATCTCGAACCACAAAAAGTTTTGAAAATCGTG
389 GGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTG
16530076 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
454 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
16530141 ATTTACAAGCCATAAAAATGGCATTGGC-TCGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
519 ATTTACAAGCCATAAAAATGGCATTGGCAT-GCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * *
16530205 CACCCTATCGATCCACGGCTTGCGTATCCCGTCTCTCAGGCCGACGTAGTGCCCGCCCGTCCGCC
583 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG--C-CC
* * * * ** **
16530270 TGCTCGCTCATTTCGTCGATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACTGG
645 -GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* ** * * * * * *
16530335 GCCAAAGGTTGTGGCAGTAGGATCGACAACACGTAGAGGGGGACCCGATCGATCCCCGGCTTGTG
709 ACTGAGGGTTGCGGTAGCAGGATCGACAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCG
* * * *
16530400 CATCCCACCCCTCTGGCCGGTTGAGTGCCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATACGG
774 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
** * *
16530465 AGTTCATTTTC-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAG
839 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAG
* * * * * **
16530525 GGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCCGATGCCGCTTTTTTCTTTGTTGGGGCACC
1 GGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACC
* * * * * *
16530590 ATCGTCGGAGCATCGTCGGAGAACCTGACTGGCAGCATTGGGGTTCCGACGATCGGGAGGCCCGA
66 ATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGG-GGGCCGG
*
16530655 GGGGGTGTGCGCACATGACGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
130 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* * * *
16530720 TCATCAAACCTTGAGAACTCACACCCCATTAAAGAGCATTTGAGAATTTATAGGTTTGCTGCCAG
195 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
*
16530785 TAGCCATTAAACTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
260 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * *
16530850 AGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGT
325 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * * **
16530915 TGCCAAAACTCCTTTCAAAAAAATTTAAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCGTG-
390 GGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGA
* * * *
16530979 AAAATAGAAAGCGAGCCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTTTGAA
455 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
*** *
16531044 TTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCGCCTACCA
520 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * ** * * *
16531109 CCCTATTGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCAACGAAGTGCTCGCCCGCCCTCCCG
585 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG
* * * *
16531174 CTCGTTTCATCGGTTGGCTTGGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTAGACTGAG
650 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAG
* * * * *
16531239 GGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCTCAGCATGCGCATCCT
715 GGTTGCGGTAGCAGGATCGACAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCC
* * * * * *
16531304 GCCCTTCTAGCCAGCTGAGCGCTCGCTA-GCTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTC
780 GCCCCTCTGGCCGGCTGAGCGCCCGC-ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
16531368 ATTCCCAG--T---C-TA---AG---------A-TC--AGATCGGACC--A---AG
844 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAG
* ** * * *
16531398 GGTTGCGACAGCACATGCTGGGCTCGGGCATTTGCTGGCACCGTATTTTTCTTCACCGAGGCACC
1 GGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACC
* ** * * * *
16531463 ATCGCCAGAGCATCACCGGAGAACCTGACTGGCAGCATTAGGGTTCCAGCGATCGGGGGTGCC-G
66 ATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGG-GCCGG
* *
16531527 GGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATACC
130 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* *
16531592 TCATCAAACCTCGAGAACTCACTCCCCC-TAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAG
195 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
*
16531656 TAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
260 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
*
16531721 AGTTTTTAGTTG-ATTTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
325 AGTTTTTAGCTGAATTT-TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* ** *
16531785 GGGCCAAAATTCCTTCCAAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTTAAAAATCGTG
389 GGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTG
16531850 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
454 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
*
16531915 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTCAACCCACCTACC
519 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* *
16531980 -CCCTATCGATCAACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCTC
584 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG--C
* * **
16532044 GCTCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTTTGATCAGACCA-A
647 -C-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
* * * * * * * *
16532108 ATCGAGGGTTGCAGCAGCAGGATCGACAGCACGCAGAGGGGGACCTGACCGATCCCCAGATTGCG
710 CT-GAGGGTTGCGGTAGCAGGATCGACAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCG
* *
16532173 CATCCCGCCCCTCTGGCCGGCTGAGCGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGTATACGG
774 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* * * * * *
16532238 AGTTCATTCCCAATCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAATCAGACTGAG
839 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAG
* * * * *
16532299 GGTTGCGGCAGCACATTCTGGGCTCGGGCATGTGCTGGTGCTGTATTTTTCTTCGTCGGGGCACC
1 GGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACC
* * * *
16532364 ATTGCCGGAGCATCGTCGGAGAACCTGACCGTCGGCATTGGAGTTTCGGCGAT-GGGGGGCCGGG
66 ATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGG
*
16532428 GGGCGTG-G-GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATTCC
131 GGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* * *
16532491 TCGTCAAACCTTGAGAACTCACACCCCCTTAAAGA-CGATTTGAGATTTTACAAGTTTGCTGCCA
195 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC-ATTTGAGATTTTACAGGTTTGCTGCCA
* * *
16532555 GTAGGCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTC
259 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
*
16532620 GAGTTTTTAGCTG-ATTGTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT
324 GAGTTTTTAGCTGAATT-TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * * *
16532684 GGGGCC-AAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAACTGCAAAATGTTTCAAAAATCGT
388 GGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGT
16532748 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
453 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
*
16532813 AATTTACAAGCCATAAAAATGGCATTGGCAGGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
518 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * * * *
16532878 CACTCTATCGATCAATGGCTTGCGCATCCCGTCTCTCTGGCTGGCATAGTGTCCGCCTGCCTGCC
583 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-CC-GCCCGCC
* * * *
16532943 CGCTCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCTAGTCTCAA-ATTAGACCA
644 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT-AAGATCAGACCA
* * ** * * * *
16533007 AACTGAGGGTTGCAGTAGCAGGATCGGTAGCACGTAGAGGGGGAACCGACCGATCCCTGGATTGC
708 GACTGAGGGTTGCGGTAGCAGGATCGACAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGC
*
16533072 GCATCCCGCCCCTCTGGCCGGCTGAGCGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
773 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* *
16533137 GAGTTAATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAG
838 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAG
* * * *
16533199 GGTTGCGACAGCACATTCTAGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACC
1 GGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACC
** * * *
16533264 ATTACCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTCGGGTTTCGGTGATCGGGAGGGCC--
66 ATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGG-GGGCCGG
*
16533327 GGGGGAGTGCGCACATGATGTGCGATGGGTG-TCGGTACTTGGCCCTTATATTGGCCCCCTATCC
130 GGGGGTGTGCGCACATGATGTGCGATGGGTGCT-GGTACTTGGCCCTTATATTGGCCCCCTATCC
* * * *
16533391 CTCATCAAACCTCAAGAACTCACA--CCCTTAAAGAGCATTTGAAATTTTAAAGTTTTGCTGCCA
194 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
16533454 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
259 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
*
16533519 GAGTTTTTAGTTG-ATTTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
324 GAGTTTTTAGCTGAATTT-TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * *
16533583 GGGGCCAAAATTCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTAAAAATCGT
388 GGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGT
16533648 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
453 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
16533713 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
518 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* *
16533778 CACCCTATCGATCCACGGCTTACGGATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCC
583 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCC
* * * *
16533843 CGATCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCG
648 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTG
16533908 AGGGTTGCGGTAGCA
713 AGGGTTGCGGTAGCA
16533923 CATGCTGGGC
Statistics
Matches: 6956, Mismatches: 759, Indels: 307
0.87 0.09 0.04
Matches are distributed among these distances:
865 246 0.04
866 4 0.00
867 126 0.02
868 198 0.03
870 4 0.00
871 260 0.04
872 209 0.03
873 110 0.02
874 4 0.00
875 177 0.03
876 69 0.01
877 111 0.02
878 12 0.00
880 3 0.00
881 4 0.00
882 2 0.00
884 2 0.00
885 4 0.00
888 2 0.00
889 1 0.00
890 2 0.00
892 217 0.03
893 178 0.03
894 209 0.03
895 158 0.02
896 184 0.03
897 128 0.02
898 318 0.05
899 703 0.10
900 1183 0.17
901 650 0.09
902 394 0.06
903 495 0.07
904 92 0.01
905 385 0.06
906 97 0.01
907 15 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
GGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACC
ATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGG
GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
GCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAA
AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGC
TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGG
GTTGCGGTAGCAGGATCGACAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCG
CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAG
Found at i:16529594 original size:26 final size:26
Alignment explanation
Indices: 16529558--16529610 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16529548 GTTGACTTAG
*
16529558 GCATACAGAGTTCATTCCCCGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
16529584 GCATACAGAGTTCTTTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16529610 G
1 G
16529611 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16532268 original size:26 final size:26
Alignment explanation
Indices: 16532232--16532282 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16532222 TGACTTAGGT
*
16532232 ATACGGAGTTCATTCCCAATCTAAGC
1 ATACAGAGTTCATTCCCAATCTAAGC
*
16532258 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAATCTAAG
16532283 ATCGAATCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAATCTAAGC
Found at i:16533166 original size:26 final size:26
Alignment explanation
Indices: 16533130--16533182 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16533120 GTTGACTTAG
16533130 GCATACGGAGTTAATTCCCAATCTAA
1 GCATACGGAGTTAATTCCCAATCTAA
* *
16533156 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAATCTAA
16533182 G
1 G
16533183 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAATCTAA
Found at i:16534983 original size:713 final size:710
Alignment explanation
Indices: 16533156--16535123 Score: 3154
Period size: 714 Copynumber: 2.8 Consensus size: 710
16533146 CCCAATCTAA
* *
16533156 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATTCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * **
16533221 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATTACCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGC-GCATTTTTCTTC-ACCGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * *
16533286 ACCTGACCGGCGGCATTCGGGTTTCGGTGATCGGGAGGGCC-GGGGGAGTGCGCACATGATGTGC
129 ACCTGACCGGCGGCATT-GGGTTCCAGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
16533350 GATGGGTG-TCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
193 GATGGGTGCT-GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTCGAGAACTCAC
* *
16533414 A-CCCTTAAAGAGCATTTGAAATTTTAAAGTTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
257 ACCCCTTAAAGAGCATTTGAGATTTTAAAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
16533478 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGATTTGTTTTGT
322 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTAT
* * *
16533543 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCCTTCCAAAAAAA
387 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
*
16533608 TTTTAAAAAATCCTGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
452 TTTTAAAAAATCCTGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
16533673 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
517 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
16533738 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGG
582 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGC
* *
16533803 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGATCGTTTCGTCAGTTGGCTTAG
647 ATCCCATCTCTCTCGCCGGCGTAGTGCCCGCCCGCCCGCCCGATCGTTTCGTCAGTTGGCTTAG
* **
16533867 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * *
16533932 CTCGGGCATGCGCTGGTGCCGTATTTTTCTTCACCGGGACACTATCGCCGGAGCATCATCGGAGA
66 CTCGGGCATGTGCTGGTG-CGCATTTTTCTTCACCGGG-CACCATCGCCGGAGCATCGTCGGAGA
* *
16533997 ACCTGACCGGCGGCATTGCGGTTCCAGTGATCGGGGGAGCCGGGGGGTGTGCGAACATGATGTGC
129 ACCTGACCGGCGGCATTG-GGTTCCAGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
16534062 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTT-GAGAACTCAC
193 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA-CTTCGAGAACTCAC
* * *
16534126 ACCCCATTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTTGCCATTAAAGTGTCTGAAAT
257 ACCCC-TTAAAGAGCATTTGAGATTTTAAAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
16534191 GGGGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTCGAGTTTTTAGCTAAATTTTTTTA
321 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTA
*
16534256 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
386 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * * *
16534321 ATTTTAAAAAATCCCGAACCATAAAAACTTTCAAAAATCATGGAAAATAGAAAATGAGTCGTCTT
451 ATTTTAAAAAATCCTGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
16534386 GCCCTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
516 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
16534451 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTGCG
581 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACG
* * *
16534516 CATCCCATCTCTCTCGCCGGCGTAGTGCCCGCCCG-TCGCCCGCTCGTTTCGTCGGTTGGCTTAG
646 CATCCCATCTCTCTCGCCGGCGTAGTGCCCGCCCGCCCGCCCGATCGTTTCGTCAGTTGGCTTAG
* * * *
16534580 GCATAAGGAGTTCATTCCCAGTTTAAGATCGGACTGGACCGAGGGTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * **
16534645 CTCGGGCATGTGCTGGTGTCACATTTTTCTTCACCAGGGCACCATCGTCAAAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTG-CGCATTTTTCTTCACC-GGGCACCATCGCCGGAGCATCGTCGGAGA
* * *
16534710 ACCTGACCGGCGGCATTAGGGTTCCAGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATTTGT
129 ACCTGACCGGCGGCATT-GGGTTCCAGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
16534775 GATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTCGAGAACTCACA
193 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTCGAGAACTCACA
16534840 CCCCTTAAAGAGCATTTGAGATTTTAAAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
258 CCCCTTAAAGAGCATTTGAGATTTTAAAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
16534905 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTATG
323 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTATG
16534970 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
388 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * * *
16535035 TTTAAAAAGTCCTGAACTGTAAAAAGTTTTGAAAATCTTGAAAAATAGAAAACGAGTCGTCTTGC
453 TTTAAAAAATCCTGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
*
16535100 CATGAAACTTCACGTGGAGGCTTA
518 CATGAAACTTCACGTGAAGGCTTA
16535124 GGCTTGCGCA
Statistics
Matches: 1151, Mismatches: 95, Indels: 21
0.91 0.07 0.02
Matches are distributed among these distances:
710 5 0.00
711 145 0.13
712 344 0.30
713 264 0.23
714 393 0.34
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (710 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCGCATTTTTCTTCACCGGGCACCATCGCCGGAGCATCGTCGGAGAAC
CTGACCGGCGGCATTGGGTTCCAGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTCGAGAACTCACACCC
CTTAAAGAGCATTTGAGATTTTAAAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTATGCAT
GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
AAAAAATCCTGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCC
CATCTCTCTCGCCGGCGTAGTGCCCGCCCGCCCGCCCGATCGTTTCGTCAGTTGGCTTAG
Found at i:16536119 original size:26 final size:26
Alignment explanation
Indices: 16536089--16536193 Score: 165
Period size: 26 Copynumber: 4.0 Consensus size: 26
16536079 GTTGACTTAG
* *
16536089 GCATACGAAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16536115 GCATACGGAGTTCATTCCCAGTCTGA
1 GCATACGGAGTTCATTCCCAGTCTAA
16536141 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
16536167 GCATACGGAGTTCATTCCTACTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16536193 G
1 G
16536194 ATCAGACCGG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16537071 original size:26 final size:26
Alignment explanation
Indices: 16537035--16537087 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16537025 GTTGACTTAG
16537035 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
16537061 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16537087 G
1 G
16537088 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16540488 original size:26 final size:26
Alignment explanation
Indices: 16540452--16540504 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16540442 GTTGACTTAG
16540452 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16540478 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16540504 G
1 G
16540505 ATCGGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16542266 original size:26 final size:26
Alignment explanation
Indices: 16542237--16542287 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
16542227 GGATTGACTT
*
16542237 AAGCATACAGAGTTCATTTCCAGTCG
1 AAGCATACAGAGTTCATTCCCAGTCG
16542263 AAGCATACAGAGTTCATTCCCAGTC
1 AAGCATACAGAGTTCATTCCCAGTC
16542288 TAAGATTGGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.25
Consensus pattern (26 bp):
AAGCATACAGAGTTCATTCCCAGTCG
Found at i:16544059 original size:26 final size:26
Alignment explanation
Indices: 16544020--16544072 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16544010 GTTGACTTAC
* *
16544020 GCATACGGACTTCATTCCCAGTCTAA
1 GCATACAGACTTCATTCCCAATCTAA
*
16544046 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGACTTCATTCCCAATCTAA
16544072 G
1 G
16544073 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGACTTCATTCCCAATCTAA
Found at i:16544959 original size:26 final size:26
Alignment explanation
Indices: 16544923--16544975 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16544913 GTTGACCTAG
*
16544923 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
16544949 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
16544975 G
1 G
16544976 ATTGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:16546517 original size:904 final size:902
Alignment explanation
Indices: 16537479--16551458 Score: 17897
Period size: 899 Copynumber: 15.7 Consensus size: 902
16537469 CAAGGCACGT
* * *
16537479 AGAAATATGAAGATATGCCTAAACCCACCTCCCACCCTATCGATCCACGGCTTGCACATCCCGTC
1 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * ** *
16537544 TCTCTAGCCGACGTAGT-----------GCCCGCCCGTTAATTTCGTCGGTTGGCTTAGGCATAT
66 TCTCTGGCCGGCGTAGTGCCCCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * * * *
16537598 GGAGTTCATTCCCAGTCTAAGACCCGACCGGACCGAGGGTTGCAGC-GACAAGATCGGCAGCTCG
131 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAG-CAGGATCGGTAGCACG
* ** * **
16537662 CAGAGGGGGACTCGGCCGATCATCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCTACA
195 CAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* ** * *
16537727 CGCTCGTTTCGCGGGTTGACTTAGGCATACAAAGTTCATTCCTAGTCTAAGCATACGGAATTCAT
260 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
** * * * *
16537792 TCCCAGAGTAAGATCGGATCAGACCGAGGGTTACGGCAGCACATGCTTGGCTCGGGCATGTGCTG
325 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * *
16537857 GTGCCGCATTTTTCTTCG-CTGGGGCACCATCGCCAGAGCATCGTCGGAGAACCTGACCGGCGGC
390 GTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGC
* * *
16537921 ATTTGGGTTCCAACGATCGGGGGGGCCGGGGGGTGTTCGCACATGATGTGCGATGGGTGCTGGTA
454 ATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
*
16537986 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAACAGC
519 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* *
16538051 ATTTGAGATTCTACAGGTTTGCTGCCAGTAGTCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
584 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* *
16538116 AAATGGTCACAAAATCTTGTACACTTCAAGTTTGTAGCTGAATTTTTTT-TGCATGCCAACAAAA
649 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * *
16538180 ATACAAGGATCACGTCTACCAGGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTC
714 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC
* * *
16538245 GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACAAGTCGTCTTGCCATGAAACTTCAC
779 GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* * ** ***
16538310 ATGAAGGCTGAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTTCCACAT
844 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* ** *
16538369 AGAAATATGAAGATGTGCCTAAACCTACCTACCACCCTATCGATCTGCGGCTTGCGCATCCTGTC
1 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * ** *
16538434 TCTCTGGTCGGTGTAGTG---CCCTCCCGCCCGCCCGCTCGTTTCGTCGGTTCACTTAGGTATAC
66 TCTCTGGCCGGCGTAGTGCCCCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * ** * * *
16538496 CGAGTTCATTCCTAACCTAAGATCGGATCAGACCGAGGGTTGCGGCAGTAGGATCGGTAGCACGC
131 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGC
* * * * * * * * * *
16538561 AAAAGGGGACCCGACCAATCCCCAGCTTACGCGTCTCGCCCCTCTGGCTGGCTGAGCGCCCACAC
196 AGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* * * *
16538626 GCTCATTTCGTGGGTCGACTTACGCATACGGAGTCCATTCCCAGTCTAAGCATACGGAGTTCATT
261 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * * *
16538691 CCCAGTCAAAGATCGGACCAGG-TCGAGGGTTGCGGTAGCACATGCTAGGCTCGGGCATGTGCTG
326 CCCAGTCTAAGATCGGACC-GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* ** * **
16538755 GTGTCGCATTTTTCTTCGTCGGGGTGCCATCATCGGAGCATCATCGGAGAACCTGA-CGAGCGGC
390 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCG-GCGGC
* * * *
16538819 ATTGGGGTTCCGACGATC-GGGGGGCTGGGGGGTGTGCACACTTGATGTGTGATGGGTGCTGGTA
454 ATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
16538883 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTC-AGAACTCACACCCCCTTAAAGAG
519 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCGAGAACTCACACCCCCTTAAAGAG
* * *
16538947 CATTTTAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGATACTTTTTT
583 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * * * *
16539012 CAAATGGTAACAAAATGTTGTACACTTTGAGTTTTTGGCTGAA-TTTTTTGTGCA-GTCCAATAA
648 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG-CCAACAA
*
16539075 AAATACAAGGATCACGTCTTCCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
712 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
* * ** *
16539140 CTGAACCGCAAAAAGTTTCAAAAATTGTGAAAAATCA-AAAACGAGTCGTCTTGCCATGAAGCTT
777 CCGAACCGTAAAAAGTTTCAAAAATCATGAAAAAT-AGAAAACGAGTCGTCTTGCCATGAAACTT
* * *
16539204 CACATGAAGGCTTAAGGGACCATTGTATGAATTTATAAGCCATAAAAATGGCATTGGCATGT
841 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* * * *
16539266 AGAAATATGAAGATGTGCCTAAACCCACCTACCACACTATTGATCCAAGGCTTACGCATCCCGTC
1 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * *
16539331 TCTCTTGCCGACGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGCCCGCTTGTTTCGTCGGTTGGCT
66 TCTCTGGCCGGCGTAGTG--C-CC--CCCGCCCG--C-C-CGCCCGCTCGTTTCGTCGGTTGGCT
* * ** ** * *
16539396 TAGGTATATGGAGTTCATTCCCAGTCTAAGAGT-AGA-CAGGATTGAAAGATGCGGCAGCAAGAT
122 TAGGCATACGGAGTTCATTCCCAGTCTAAGA-TCAGACCA-GACCGAGGGTTGCGGCAGCAGGAT
* * * * * *
16539459 CGGTAGCACGTAGAGGGGGA-CCGGATCGATCCCCGACTTGCGCATCCCGCCCATCTGGCAGGTT
185 CGGTAGCACGCAGAGGGGGACCCGG-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
** * * * *
16539523 GAGCAG-CCGCACATTCGTTTCGTGGGTTGACTTTGGCATACGGAGTTCGTTCCCAGTATAACCA
249 GAGC-GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * *
16539587 TACAGAGTTCATTCCCAGCCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTT
313 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
* * * * *
16539652 GGGCATGTCCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCTGAGCATCACCGGAGAACC
378 GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACC
* *
16539717 TGACCGGCGGCATTAGGGTTCCGGCGATCGGGGGGGCC-GGGGG-GTGCGCACATGATGTGCGAT
443 TGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
16539780 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
508 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
16539845 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTGAAATGGGG
573 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * *
16539910 ACACTTTTTTCAAATGGTCACAAAATATTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTTCA
638 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * *
16539975 TGCCAA-AAAAATACAAGGATCATGTCTATCAAGTTTGGGGCCAAAACTCGTTCTGAAAAAATTT
703 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* * * * *
16540039 AAAAAAATCCCGAACCGCAAAAGGTTTCAAAAATCTTGAAAAATAGAAAATGAGTCGTCTTGCCA
768 TAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* * *
16540104 TGAAACCTCACGTGAAGGCTTAAGGGACCTTTTTATGAATTTACAAGCCATAAAAATGGCATTGG
833 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
16540169 CATGC
898 CATGC
16540174 AGAAATATGAAGATGTGCCT-AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
1 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * * * * *
16540238 TCTCTGGCCTGCGTAATG---CCCGCCCACCCGTCCGCTTGTTTCATTGGTTGGCTTAAGG-ATA
66 TCTCTGGCCGGCGTAGTGCCCCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT-AGGCATA
* * * * * * * *
16540299 CAGAGTTCATTCCCAGTCTTAGATCAGACCAGACTGA-GGTTGTGGTAGCAGGATCAGCAACACG
130 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACG
* * * * * * *
16540363 CAGAGGGGGACCCGTCCGATCCCCGGCTTACGTAGCCCGCCCCT-TCGGCCGACTGAGTGCCCAC
195 CAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCT-GGCCGGCTGAGCGCCCGC
*
16540427 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCA
259 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * * * * *
16540492 TTCCCAGTCTAAGATCGGACCGAACCGAGGGTTACAGCTGCACATGCTGGGCTCGAGCATGTACT
324 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT
* * * * * *
16540557 GGTGCTGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATTGCCCGAGAACCTAACCGACGGC
389 GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGC
* ** ** * *
16540622 ATTGAGGTTCCGGTGATCATGGGGGTCGGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTA
454 ATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* *
16540687 CTTGGCACTTATATTGTCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
519 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
*
16540752 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTC
584 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* ** *
16540817 AAATGGTCACAAAATCTTTTACACTTCGAAATTTTAGCTGGATTTTTTTGTGCATGCCAACAAAA
649 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * * *
16540882 ATACAAGGATCACGTCTACGAAGTTTGGGACCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCA
714 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC
* * *
16540947 AAACCTTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCCTGAAACTTCAC
779 GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
**
16541012 GTGAAGGCTTAAGGGATTATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
844 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
*
16541071 AGAAATATGAAGATGTGCCT-AA---A-C--CCA-CC--T-GATCCACGGCTTACGCATCCCGTC
1 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * * *
16541125 TTTCTAGCCGACGTAGTG---CCTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATAC
66 TCTCTGGCCGGCGTAGTGCCCCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * ** *
16541187 GGAGTTCATTCCCAGTCTAAGATCGGATC-GAACTGAGGGTTGTGGCAAAAGGATCGGCAGCACG
131 GGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGGCAGCAGGATCGGTAGCACG
* * ** * *
16541251 TAGAGGGGGACCCGGTCGATCCTTGGCTTGCGCATCCCACCCCTCTGGCCGGCTGATCGCCCGCA
195 CAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
*
16541316 CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
260 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * *
16541381 TCCCAGTCGACA-ATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCT
325 TCCCAGTCTA-AGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT
* * ** * * * * *
16541445 GGTGTCACATTTTTCTTCGTTAGCGCACCATCGCCGAAGCATCGTCAGAGAACCTGACCGGCGGC
389 GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGC
* * * * *
16541510 ATTGGGGTTCCGACGATTGGGGGGGCGAGAGGGGGTGTGCACACCTGATGTGC-ATGGGTACTGG
454 ATTGGGGTTCCGACGATCGGGGGGGC-CG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
** * *
16541574 TAAATGGCCCTTATATTGGCCCCCTATCCCACATCAAACCTCTAGAACTCACACCCCCTTAAAGA
517 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
16541639 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA-TTTTT
582 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * *
16541703 TCAAATGGCCACAAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGAGCATGCCAACA
647 TCAAATGGTCAC-AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
*
16541768 AAAATACAAGGATCATGTCTA-CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
711 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* *
16541832 CCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
776 CCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * **
16541897 CACATGAAGGCTTAAGGGACCATTTTACAAATTTACAAGCCATAAAAATGGCATTGGCATGC
841 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
**
16541959 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTGCGGCTTGCGCATCCCGTC
1 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * * *
16542024 TCTCTGGCCGGCATAGT---CCCTGCCCGCCCGCCCGCTCGTTTCGTTGGTTCGCTTAGGCGTAC
66 TCTCTGGCCGGCGTAGTGCCCCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * *
16542086 GGAGTTCATTCCCAATCTAAGATTAGACCAAACCGAGGGTTACGGTAGCAGGATCGGTAGCACGC
131 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGC
* *** * *
16542151 AGAGTGGGACCCAATCGATCCCCGGCTTGCGCATCCCGCCTCTCTGGCCGGCTGAGCGCCCGCAT
196 AGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* * * * * * *
16542216 GCTCATTTCGTGGATTGACTTAAGCATACAGAGTTCATTTCCAGTCGAAGCATACAGAGTTCATT
261 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * *
16542281 CCCAGTCTAAGATTGGACCGGACCTAGGGTTGCGGCAGCACATGTTGGGCTCGGGCATGTGCTGG
326 CCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * * * * *
16542346 AGCCGTATTTTTCATCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCCGTAT
391 TGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCAT
* *
16542411 TGGGGTTCTTG-CGATCGGGGGGGCCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTA
456 TGGGGTTC-CGACGATCGGGGGGG-CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
*
16542475 CTTGGCCCTCATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
519 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
**
16542540 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGAAACACTTTTTTC
584 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
*
16542605 AAATGGTCACAAAATCTTGAACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
649 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * * *
16542670 ATACAAGGATCACATCTAACAAGTTT-GGGCTAGAACTCCTTCCGAAAAAATTTTAAAAAATCCC
714 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC
* * *
16542734 TAA-CGACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
779 GAACCG-TAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* *
16542798 CGTGGAGGCTTAAGGGACCAATGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
843 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* * *
16542858 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAGCCACGGCTTGTGCATCTCGTC
1 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * *
16542923 TCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCCTGCTCGTTTCTTTGGTTGGCTTAGGCATA
66 TCTCTGGCCGGCGTAGTGCCC-CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* ** * ** *
16542988 CGGAGTTCATTCCCAGTGTAAGATTGGACCAGACCGAGGGTTGCAGCAGCAGGATCGACAGCATG
130 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACG
* * * * * * * * *
16543053 CAAAGTGGGACCCGACCGATCCCCGGCCTGTGCATCCCGCCCCTCTGGCTGACTGAGTGCCTGCA
195 CAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * * *
16543118 CGCTCGTTTCGTGGGTCGACTTAGGCGTACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAC
260 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * * *
16543183 TCCCAGTCTAAGATCAGATCGGACCGAGGGTTACAGCAGCACATACTGGGCTCGGGCATGTGCTG
325 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* ** * * ** *
16543248 GTGCCGTATTTTTCTTCACCGAGGCACCATCG-CCGA--A-------A-AATTTGACCCGC-GCA
390 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCA
* * *
16543301 TTAGGGTTCCGACAATCGGGGGGGCCGAGAGGGTGGTGTGCGCACATGATGTGCGATGGGTGCTC
455 TTGGGGTTCCGACGATCGGGGGGGCC--G-GGG-GGTGTGCGCACATGATGTGCGATGGGTGCTG
*
16543366 GTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAT
516 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
*
16543430 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTT
581 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * * *
16543495 CTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTATGCAAGCCAACA
646 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* *
16543560 AAAATACAAGGATCACATCTACCAAGTTT-GGGCCAGAACTCCTTCCGAAAAAATTTTAAAAAAT
711 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* * * **
16543624 CCCTAACGGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
776 CCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * * *
16543689 CACGTGCAGGCTTAAAGGAGCATTCTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
841 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* * * *
16543751 AAAAATATGAAGATGTGCCTAAACCCACCTAGCACCCTATCGATCCACGGCTTGCGCATCCTGTT
1 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
*
16543816 TCTCTGGCCGGCGTAGT-----------G--C-CCCGCTCGTTTCATCGGTTGGCTTAGGCATAC
66 TCTCTGGCCGGCGTAGTGCCCCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
** * * * * * * * *
16543867 GGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCAGTAGTAGGATCTGCAGCATGT
131 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGC
* * ** * * * ** *
16543932 TGAGGGGGACCTGATCGATCCCCGGGTTGCACATCCTGCCCCTCTGGTTGGCTGAGCACCCGCAC
196 AGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* * *
16543997 GCTCGTTTCGTGGGTTGACTTACGCATACGGACTTCATTCCCAGTCTAAGCATACAGAGTTCATT
261 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * * * * * *
16544062 CCCAATCTAAGATCGGATCAGATCGAGGGTTGCGACAGCAGATGCTGGGCTCAGGCATGTGCTGG
326 CCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * *
16544127 TGCCGCATTTTTCTTCGTTGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCAT
391 TGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCAT
** * * * *
16544192 TTTGGTTCTGACAATCGGGGGGGCCGGGGGGTGTGCGCACATGATATGCAATGGGTGCTGGTACT
456 TGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* * * *
16544257 TGGGCCTTATATTGGCCCCCTATCCCACATCAAACCTCAAGAACTCACACCCCTTTAAAGAGCAT
521 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* * * * *
16544322 TTGAGATTTTACAGATTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACGCGTTTTTCGA
586 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* * * *
16544387 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTCTTTTATGCATTCCAACAAAAAT
651 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* * * *
16544452 ACAAAGATCACGTCTACCAAGTTTGGGGCAAAAACTCTTTCCGAAAAAATTTTAAAAAATCTCGA
716 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGA
* * * ** * *
16544517 ACTGCAAAAATTTTTTAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGT
781 ACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* * **
16544582 GAAGGCTTAAAGGACCATTGAATGAATTTACAAGCCATAAAAATGGCATTGGCACAC
846 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* *
16544639 AGGAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTC
1 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * * *
16544704 TCTCTTGCCGGCATAGTGCCCGCCCGTCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAAGCATA
66 TCTCTGGCCGGCGTAGTGCCC-CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* ** ** *
16544769 CAGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTATGGCAGCAAGATCGGCT-GCAC
130 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGG-TAGCAC
* * ** * **
16544833 GCAGTGGGGGACCCGGCCAATCCCCGGCTTATGCATCCCGTCGATCTGGCCGGCTGAGCGCCCGC
194 GCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
* *
16544898 ACGTTCGTTTCGTGGGTTGACCTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
259 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * * ** * * * *
16544963 TTCCCAATCTAAGATTGAACCGGAATGAGGGTTGTGGTAGTACATGTTGGGCTCGGGCATGTGCT
324 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT
* * * ** *
16545028 GGTGTCGTATTTCTCTTCACCGGGGCACCA---T----G--T---CGGAGAACTTGACCGGCGGC
389 GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGC
* ** *
16545081 ATTGGGGTTCCGACGATCGGGGGGGTCGGGTTGTGTGCGCACATGATGTACGATGGGTGCTGGTA
454 ATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
*
16545146 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGC
519 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
16545211 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
584 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
*
16545276 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTACATGCCAACAAAA
649 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * * * *
16545341 ATACAAGGATCATGTCTAACTAGTTTGGGGCCAAAACACCTTCGGAAAAAATTTTAAAAAATCCC
714 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC
* * *
16545406 GAACCGTAAAAAGTTTCAAAAATCATTAAAAATAGAAAACGAGTCGTCTTGCAAAGAAACTTCAC
779 GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* *
16545471 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGT
844 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* * * * *
16545530 AGAAATATGAAGATGTGCCTAAACCCACCTACCGCCCCATCGATGCACAGCTTGCGCATCCCGTG
1 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* ** * *
16545595 TCTTTGGCCAACGTAGTGCCCCCCAGCCCGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGAATA
66 TCTCTGGCCGGCGTAGTGCCCCCC-GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
** * *
16545660 CGGAGTTCACACCCAGTCTAAGATCAGACCAGATCGAGGGTTGTGGCAGCAGGATCGGTAGCACG
130 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACG
* * * * * *
16545725 CAGAGGGGGACCCGGTCGATCCTCGGCTT-CTCATCCCTCCCTTCTGGCCAGCTGAGCGCCCGCA
195 CAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* *
16545789 CGCTCGGTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCAT
260 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
*** ** * * * * *
16545854 TTGTAGTCTAAGATCAAACTGGATCGAGGGTTACGACAGCATATGCTGGGCTCGGGCATGTGCTG
325 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * **
16545919 GTGCTGCATTTTTCTTCGTCGGGGCACCATCGCCAAAGCATCGCCGGAGAACCTGACCGGCGGCA
390 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCA
* *
16545984 TTGGGGTTCCGACGATTC-GAGGGG-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGATA
455 TTGGGGTTCCGACGA-TCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* *
16546047 CTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGC
519 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
*
16546112 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACGCTTTTTTC
584 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
** * *
16546177 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAAATGAATTGTTTTGTGCATGCCAAAAAAA
649 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC---AACA
* * *
16546242 AAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTAAAAAAAT
711 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* * * *
16546307 CTCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTT
776 CCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * **
16546372 CGCATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATTTCATTGGCATGC
841 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* *
16546434 AGAAATATAAAGATGTGCCTCAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
1 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
** * * * * * * *
16546499 TCTCTGGCCGATGTAGTGCCCGCCTGCCCGCCCACCAGCTCGTTTAGCCGATTGTCTTAGGCATA
66 TCTCTGGCCGGCGTAGTGCCC-CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* ** * * *
16546564 CGGAGTTCATTCCTAGTCTAAGATCAGACTGGTCTGAGGGTTGCGGCAGCATGATCGGTAGCACG
130 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACG
* * * * *
16546629 TAGAGGGGGCCCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTTTGGCCGGCTGAGCGCCCGCA
195 CAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * *
16546694 CGCTTGTTTTGTGGGGGTTGACTTAGGCATACGGAGTTCATT--C---CT-AGTATA---AG---
260 CGCTCGTTTCGT--GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* * * *
16546747 A-T--CAGACT-AGAT----------TGAGGGTTGCGGTAGCACATTCTGGGCTCGGGCATGTGC
323 ATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGC
* ** * * * *
16546798 TGGTGACGCATTTTTCTTCACCGGGGCACCATCGCCAGAGCATCGCCAGAGAACCTGACCGGTGG
388 TGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGG
*
16546863 CATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
453 CATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* * * *
16546928 ACTTGGCCCTTACATTGGCCCCCTGTCCCTCATCAAACCTTGGGAACTCACACCCCCTTAAAGAG
518 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
*
16546993 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAATGGGGACACTTTTTT
583 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
16547058 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
648 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * *
16547123 AATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTTCTTTCGAAAAAATTTTAAAAAATCC
713 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* **
16547188 TGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
778 CGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
16547253 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT-GCATTGGCATGC
843 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
*
16547312 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGAC
1 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * *
16547377 TCTCTGGCCGGCGTAGTG---CCCGCCCGCCAGCTCGCTTGTTTCGTCAGTTGGCTTAGGCATAC
66 TCTCTGGCCGGCGTAGTGCCCCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * * *
16547439 GGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAAGATCGGTACCATGG
131 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGC
* * * * * * * *
16547504 AGAGAGGGACTCGGTCGATCCTCGGCTTGCGCATCCCGCCCCTCTAGCCGGTTGAGCACCCGAAC
196 AGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* *
16547569 GCTCGTTTCAGT-GGTCGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCAT
261 GCTCGTTTC-GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
** * *
16547633 TCCCAGTCTAAGATCGGACCGGGTCGAGGGTTGTGGCAGCACATGCTGGGCTCGAGCATGTGCTG
325 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * * * * * * *
16547698 GTGCCACATTTTTCTTCATCGGGGAACTATCGTCGGAGCATCACCGGAGAACCTGACTGACGGTA
390 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCA
* * *
16547763 TTAGGGTTCCGACGATCGGGGGGGCCTGGGGGGTGTGCACACACGATGTGCGATGGGTGCTGGTA
455 TTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
*
16547828 CTTGGCCCTTATATTGGCCCCCTATCCCTCGTCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
519 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* *
16547893 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAAATAGGGACACTTTTTTC
584 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * *
16547958 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATGTTCTTGTGCATGCCAACAAAA
649 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * ** *
16548023 ATACAAGGATCACATCTACAAAGTTTGGGGCCAAAACTCCTTCTAAAAAAATTTTAAAAAATCTC
714 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC
* * * * * *
16548088 GAACCGTAAAATGTTTCGAAACTCTTGAAAAATAGAAAACGAGTCATCTTGCAATGAAACTTCAC
779 GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
****
16548153 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATTTTGTTGGCATGC
844 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* * *
16548212 AAAAATATGAAGATGTGCCTCAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTC
1 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * *
16548277 TCTTTGGCCGGCGTAGTGCCCGGCCGCCCGACCG-TCGCTCGTTTCGTCGGTTGGCTTAGGCATA
66 TCTCTGGCCGGCGTAGTGCCC-CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * ** *
16548341 CGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCCAGGGTTGCGGCAACAGGATCGACAGCATG
130 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACG
* * * *
16548406 CAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGTTGAGCACCCGTA
195 CAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * *
16548471 CGCTCGTTTCGTGGGATGACTTAGGCTTACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCTT
260 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * * * *
16548536 TCCCAGTATAAGATCGGACCAGACCAAGGGTTGTGGCAGCACATGCTAGGCTTGGGCATGTGCTG
325 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * * * *
16548601 GTGCCGTATTTCTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAAACTGACCGACGGCT
390 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCA
* * * * * *
16548666 TTGGGGTTCAGGCGATCAGGGGGGTCGGGGGGGGTGTGCGTACATGATGTGCGATGCGTGCTGGT
455 TTGGGGTTCCGACGATC-GGGGGGGC-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* *
16548731 ACTTGGCCCTTATATTGGCCCCCTATGCCTCATCAAACATCGAGAACTCACACCCCCTTAAAGAG
518 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
*
16548796 CATTTTAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
583 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * * *
16548861 CAAATGGTCA-AAAACCTTGTACACTTTGACTTTTTAGCTGAACTTTTTTGTGCATGCCAACAAA
648 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* *
16548925 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCT
713 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* * * *
16548990 CGAAACGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGCCGTCTTGCCATGAAACTTGA
778 CGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* *
16549055 CGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGT
843 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* *
16549115 GGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTC
1 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* ** *
16549180 TCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCTACTCGTTTCATCGGTTGGCTTAGGCATA
66 TCTCTGGCCGGCGTAGTGCCC-CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * * * * * * *
16549245 CAGATTTCATTCCCAGTCTAATATCAGACCGGACTGATGGTTACGGCTGTAGGATCGGTAGCACG
130 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACG
* * * *
16549310 TAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCAGCTAAGCGCCCGCA
195 CAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * * *
16549375 CGCTTGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACAGAGTTCAT
260 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
** * * *
16549440 TCCCAGTCTAAGATCGGATTGGACCGAGGGTTGCGACAGTACATGCTGGGCTCAGGCATGTGCTG
325 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* ** *
16549505 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCGCCGGAGAACCTGATTGGTGGCA
390 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCA
* *
16549570 TTAGGGTTTC-AGCGAT---------C--GGGG-G-G-GC-C--G--G-G-GATGGGTGCTGGTA
455 TTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* *
16549613 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGGGAACTCACATCCCCTTAAAGAGC
519 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* *
16549678 ATTCGAGATTTTACAGGTTTGCTGCCAGTAACC-TCTAAAGTGTCTGAAATGGGGACACTTTTTT
584 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT-TAAAGTGTCTGAAATGGGGACACTTTTTT
16549742 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
648 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * *
16549807 AATACAAGGATCACGTCTTCCAAGTTTTGGGCCAAAACGCCTTCC-AAAAAATTTTAAAAAATCC
713 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* * * * *
16549871 TGAATCGTAAAAAGTTTCAAAAATCATGAAAAAAAGAAAATGAGTAGTCTTGCCATGAAACTTCA
778 CGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* *
16549936 CGTGAAGGCTTCAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
843 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* * *
16549996 AGAAATATGAAGATGTGCCTAAACCCACCTATCACCCTATCAATCCACGGCTTGCGCATCCCATC
1 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * * * * * *
16550061 TCTCTGGCCGACGTAGTGCCCGCCTGCCCGCCCGCGCGCTTGTTTCATTGGTTAGCTTAGGCGTA
66 TCTCTGGCCGGCGTAGTGCCC-CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * * * * * *
16550126 CAGAGTTCATTCCCATTCTCAGATCAGATCGGACCGAGGGTTGCAGTAGCAGGATCGGTAACACG
130 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACG
* * * * * * *
16550191 CAGAGGGGGACCCGACCGATCCCCGACTTACGCATCTCGCCCCTCTGGCCGGCTGGGCACCCACA
195 CAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * * * *
16550256 TGCTAGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCAT
260 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* ** ** * ** * * *
16550321 TTCTTGTCTAAGATCGGACCAAACCGAGGGTTACGGTGGCACATGTTGGTCTCGAGCATGTGCTG
325 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * **
16550386 GTGTCACATTTTTC-T--TC---G-----TCG--GG-G--T-GCCGGAGAACCTGACCGATGGCA
390 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCA
* * *
16550434 TTAGGGTTCCGACAATCGGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
455 TTGGGGTTCCGACGATCGGGGGGG-CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* * * * *
16550499 CTTGGCCCATATATTGGCCCTCTATCCCTCATCAAAGCTTGAGAACTCACACCCCCTTAAAGAGT
519 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* *
16550564 ATTTGAGATTTTATAGGTTTGCTGGCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
584 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * * * *
16550629 AAACGGTCACAAAATCTTGTACACTTCGAGGTTTTAGCTGAATTTTTTTGTGCATTCTAAAAAAA
649 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* ** * * *
16550694 ATACAAGGATCACATCTACCAAGTTTTCGACAAAAACTCATTCCGAAAAAATTTTAAAAAATCCC
714 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC
* *
16550759 GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCAC
779 GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* *
16550824 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTTGCACGC
844 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* * *
16550883 AGAAATATAAAGATGTGCCTAAAGCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTC
1 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * * *
16550948 TCTCTTGTCGGCGTAGT-------GCCTGCCCGCCCGCTCGTTTCATAGGTTGGCTTAGGCATAC
66 TCTCTGGCCGGCGTAGTGCCCCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
**
16551006 GGAGTTCATTCCCA-TCCTAAGATTGGACCAGACCGAGGG-T------------T--GT------
131 GGAGTTCATTCCCAGT-CTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACG
* * * * * **
16551049 -AGAGGGGGACCCGGCCGATCCCCGACTTCCACATACCGCCCCTCTGGCCGACTGAGCGCCCAAA
195 CAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * * * *
16551113 TGCTTGTTTCTTGGGTTGACTTAGGCATACAGAGTTCATTCCCTGTCTAAGCATACGGAGTTCAT
260 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * * * * *
16551178 TCCCAGTCTAAGATCGAACTGAACCAAGGGTTACGGCAGCACATGCTGGGCTCGGGGATGCGCTG
325 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * * * * * *
16551243 GTGTCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACTTGACTGACGGCA
390 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCA
* * *
16551308 TTGGGGTTCC-A-G-T------GGCCGGGGGGTGTGCGCCCATGGTGTGCAATGGGTGCTGGTAC
455 TTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* * *
16551364 TTGGCCCTTATATTGGCCCCCAATCCGTCATCAAACCTCGAGAACTCACACCGCCTTAAAGAGCA
520 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
16551429 TTTGAGATTTTACAGGTTTGCTGCCAGTAG
585 TTTGAGATTTTACAGGTTTGCTGCCAGTAG
16551459 AGCCCGCCCG
Statistics
Matches: 11430, Mismatches: 1437, Indels: 472
0.86 0.11 0.04
Matches are distributed among these distances:
857 179 0.02
858 1 0.00
860 2 0.00
863 1 0.00
864 156 0.01
865 4 0.00
866 1 0.00
867 1 0.00
868 4 0.00
870 5 0.00
871 2 0.00
872 26 0.00
873 2 0.00
874 178 0.02
875 3 0.00
876 4 0.00
877 3 0.00
878 371 0.03
879 239 0.02
880 5 0.00
881 733 0.06
882 309 0.03
883 1 0.00
884 2 0.00
885 3 0.00
886 279 0.02
887 506 0.04
888 682 0.06
889 207 0.02
890 288 0.03
891 640 0.06
892 15 0.00
893 428 0.04
894 304 0.03
895 66 0.01
896 224 0.02
897 651 0.06
898 453 0.04
899 1180 0.10
900 115 0.01
901 220 0.02
902 49 0.00
903 1179 0.10
904 857 0.07
905 49 0.00
907 86 0.01
908 388 0.03
909 317 0.03
910 12 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (902 bp):
AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
TCTCTGGCCGGCGTAGTGCCCCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGC
AGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
CCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
TGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCAT
TGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGA
ACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
Found at i:16547621 original size:26 final size:26
Alignment explanation
Indices: 16547592--16547644 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16547582 GTCGACTTAG
16547592 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16547618 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16547644 G
1 G
16547645 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16548527 original size:26 final size:26
Alignment explanation
Indices: 16548498--16548547 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
16548488 GACTTAGGCT
*
16548498 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTATAAGCA
*
16548524 TACGGAGTTCTTTCCCAGTATAAG
1 TACGGAGTTCATTCCCAGTATAAG
16548548 ATCGGACCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTATAAGCA
Found at i:16549435 original size:26 final size:26
Alignment explanation
Indices: 16549399--16549451 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16549389 GTTGACTTAG
* *
16549399 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16549425 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16549451 G
1 G
16549452 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16551173 original size:26 final size:26
Alignment explanation
Indices: 16551137--16551189 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16551127 GTTGACTTAG
*
16551137 GCATACAGAGTTCATTCCCTGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
16551163 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16551189 G
1 G
16551190 ATCGAACTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16551695 original size:26 final size:26
Alignment explanation
Indices: 16551659--16551711 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16551649 GTTGACTTAG
16551659 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
*
16551685 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
16551711 G
1 G
16551712 ATTAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:16552587 original size:26 final size:26
Alignment explanation
Indices: 16552551--16552603 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16552541 GTTGACTTAG
*
16552551 GCATACGGAGTTCATTCCCTATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
16552577 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
16552603 G
1 G
16552604 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:16553891 original size:904 final size:903
Alignment explanation
Indices: 16551460--16566698 Score: 13552
Period size: 904 Copynumber: 16.9 Consensus size: 903
16551450 TGCCAGTAGA
* * *
16551460 GCCCGCCCGCCCGCCAGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCCAA
1 GCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * * * * * *
16551525 GATTGGA-TCAGACCGAGGGTTCCGGTAGTAGGATCGGCAGCATGCAAAGGGGGACCCGGCTGAT
66 GATCAGACT-GGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGAT
* *
16551589 CCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCTCGGACGCTCGTTTTCGTGGGTTGA
130 CCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCG-TTTCGTGGGTTGA
* **
16551654 CTTAGGCATACGGAGTTCACTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTAGAC
194 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* * * * ***
16551719 TGGACCGAGGGTTGCGACAGCACATGATGGGCTCGAGCATGTGCTGGCATCGCATTTTTCTTCGT
259 CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
* * * * * * *
16551784 CGGGGTACCATCACCGGTGTATC-GTCAGAGAACCTGACCGGCGGCATTGGGGTT-TAGGCGATC
324 CGGGGCACCATCGCCGGAGCATCACT-GGAGAACCTGACCGGCGGCATTGGGGTTCT-GACGATC
* *
16551847 GGGGGGGCCGGGGGGGCTGTGCACACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTG
387 GGGGGGGCCGGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
*
16551912 GCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
451 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
*
16551977 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGGCACAAAATC
516 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* *
16552042 TTGTACACTTCGAGTTTTTGGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTC
581 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* * * *
16552107 TACCATGGTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
646 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
* * * *
16552172 CAAAAATCGTGAAAAAAAGAAAACGAGTCGTCTTGCAATGAAACATCACGTGAAGGCTTAAGGGA
711 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
** * *
16552237 CCATTGTATGAATTCCCAAGCCATAAAAATGGCATTGGCAGGCAAAAATATGAAGATGTGCCTAA
776 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
* * *
16552302 ACCCACCTACCA-CCTATTGATCCATGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTA------
841 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG-CCGCGTAGTGCCC
**
16552359 ----G--TGCCAACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
1 GCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * * * * * * **
16552418 GATC-GAATCGGACCGAGGGTTATGGCAGCAAGATTGGCAGCACGTAGAGGTGGACCTGGTCGAT
66 GATCAGACT-GGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGAT
* ** * * *
16552482 CCTCAACTTGCTCATCCCACCCCTCTGGTCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
130 CCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
* * *
16552547 TTAGGCATACGGAGTTCATTCCCTA-TCTAAGCATATGGAGTTCATTCCCAATCTAAGATCAGAC
195 TTAGGCATACGGAGTTCATTCCC-AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* * * **
16552611 CGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGAT-CTGGTGTCATATTTTTCTTCG
259 CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG-TGCTGGTGCCGCATTTTTCTTCG
** * * * * * * *
16552675 TCAAGGCACCATCGTCGGAACA--ACGTCGGAGAGCCTGACTGGCGACGTTGGGGTTCCGACGAT
323 TCGGGGCACCATCGCCGGAGCATCAC-T-GGAGAACCTGACCGGCGGCATTGGGGTTCTGACGAT
** * *
16552738 C-AAGGGGCCGGCGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
386 CGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
*
16552802 GCCCCCTATCCCTCATGAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
451 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* * *
16552867 GTTTGCTGCTAGTAACCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATTGTCACAAAATC
516 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
*
16552932 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCACGCCAACAAAAAATACAAGGATCACGT
581 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC-AAAAATACAAGGATCACGT
** * **
16552997 CTACCATTTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTAAACCGTAAAAAGTT
645 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTT
* * *
16553062 TCAAAAATCATGAAATATAGAAAACGAGTCGTCCTGCCATGAAACTTCACGTGTAGGCTTAAGGG
710 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* * *
16553127 ACCATTGTATGAATTTACGAGCCATAAAAATGGCATTGGCACGCAGATATATGAAGATGTGCCTA
775 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
* * * *
16553192 AATCCACCTACCACCCTATCGATTCACGGCTTGCGCATCCCGTCTCTCTAGCCAGCGTGGTGCCC
840 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-GCGTAGTGCCC
* * *
16553257 GCCCGCCTGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCAAA
1 GCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
16553322 GATCAGACTGGATCGAGGGTTGTGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATC
66 GATCAGACTGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATC
* * * *
16553387 CCCGGCTTGCGCATCCCGCCCCTCTGGTCGATTGAGCGCCCGCACGCAT-GTTTCGTGGATTAAC
131 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGC-TCGTTTCGTGGGTTGAC
* ** * *
16553451 TTAGGTATATAGAGTTCATTCCCAGTCTAAGCATACGAACTTCATTCCCAGTCTAAGATCGGACC
195 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * ** * * ** * *
16553516 AGACTGAGGGTTGCGGTGGCACACGCTGGGCTCGAGCATGTGCTGGTGATGCATTTTTCTTGGCC
260 GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
** * *
16553581 AAGGCACCATCGCCGGAGCATCACTGGAGAACCTGACCGGCGGCATTGGGGTTCTGGCGATTGGG
325 GGGGCACCATCGCCGGAGCATCACTGGAGAACCTGACCGGCGGCATTGGGGTTCTGACGATCGGG
* * * *
16553646 GGTGCCGGGGGGGTGTGCACACATGATGTGCAATGGGTGCTCGTACTTGGCCCTTATATTGGCCC
390 GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* * * *
16553711 CTTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAGAGGGCATTTGAGATTTTACAGGTTT
455 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* *
16553776 GTTGCCAGTAGCCATTAAAGTGGCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
520 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
16553841 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
585 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
** * * * * **
16553906 ACA-TTTACGGCCAAAAATCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAATTTTTGA
650 A-AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAA
* *
16553970 AAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCA
714 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* * * *
16554035 TTGTATGAATTTAGAAGCCATAAAAATGGCATTGACACGCAGAAATATGAAGATATGCCTAAACC
779 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
* * * * ** *
16554100 CACCTACCACCCTATTGATCCACAGCTTGCACATCCCGTCTCTCTGGGCGGCACAGTACCC
844 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT-GGCCGCGTAGTGCCC
* *
16554161 GCCCGCCCT-CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAATCTA
1 GCCCG-CCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* ** * * *
16554225 ACATC-GAAAAGGACCGAGGGTTGCGGCAGCAAGATCGGCAGCACGCAGAGGGGGACCCGACCTA
65 AGATCAG-ACTGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGA
* * * * * *
16554289 TCCCTGGCTTGTGCATCCCGTCCCTCTAGCCGACTGAGCGCCCGCACGCTCATTTTGTGGGTTGA
129 TCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA
* * ** * * *
16554354 CTTAGGCATACAGAGTTCATTCCGAAACTAAGCATATGAAGTTCATTACCAGTCTAAGATCGGAC
194 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* * * * * **
16554419 CGGACCGAGGGTTACGGTAGCACATGCTGGGCTCGAGCTTGTGCTGGTGCTGCATTTTTCTTCAC
259 CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
** * *
16554484 CGGGTTACCATCGCCGGAGCATC-GTCGGAGAACCTGACCAGCGGCATTGGGGTTCTGACGATCG
324 CGGGGCACCATCGCCGGAGCATCACT-GGAGAACCTGACCGGCGGCATTGGGGTTCTGACGATCG
**
16554548 GGGGGGCCGGGGGGGTGTGCGCACATGATGTTTGATGGGTGCTGGTACTTGGCCCTTATATTGGC
388 GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
16554613 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
453 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
16554678 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
518 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* *
16554743 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTA
583 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* *
16554808 CCAAGTTTGGGGCCAAAACTCCTTTCTGAAAAAATTTTAGAAAATCCCGAACCGTAAAAAGTTTC
648 CCAAGTTTGGGGCCAAAACTCC-TTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTC
* * *
16554873 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCGTGAAACTTCACGTGAAGGCTTAGGGGTC
712 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
** *
16554938 CATTGTATGAATTTACAAGCCATAAAAATATCATTGGCATGCAGAAATATGAAGATGTCCCTAAA
777 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
* *
16555003 CCCACCTACCACCCTATCGATCCACGGCTTGCGCAT-CCGTCTCTCTGGCTGGCATAGTGCCC
842 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC-CGCGTAGTGCCC
* * *
16555065 GCCCG-CT---CGCCCGCTCGTTTCGTTGGTTGGCTTAAGCATACGGAGTTCATTCCCAATCTAA
1 GCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
16555126 GATCAGACCGGACCGAGGGTTGCAGTAGCAGGATTGGCAGCACGCAGAGGGGGACCCGACTGATC
66 GATCAGACTGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATC
* * ** * * * * *
16555191 CCCGGCTTACACATCCCGCCCCTCTTACCGGCTAAACGCCTGCACGCTCATTTCGTGGGTTGACT
131 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
* * *
16555256 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCACTGCTAGTCTAAGATCGGACCG
196 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG
* * * * *
16555321 GACCGAGGGTGGCGGCAACACATGCTAGGCTCGGGCATGTGCTGGTGACGCATTTTTCCTCGTCG
261 GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
* * * *
16555386 GGGTACCATCGCCGGAGCATCACCGGAGAACCTGACCAGCGGCATTGGGGTTCCGACGATCGGGG
326 GGGCACCATCGCCGGAGCATCACTGGAGAACCTGACCGGCGGCATTGGGGTTCTGACGATCGGGG
*
16555451 GGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGTCCCTTATATTGGCCCC
391 GGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* * *
16555515 CTAGCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGTGCATTTGATATTTTACAGGTTTG
456 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* * * * *
16555580 CTTCCAGTAGCCAATAAAGTTTCTAAAATGGGGACA-TTTTTTCAAATGGCCACAAAATCTTGTA
521 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * * * *
16555644 CACTTCGAGTTTTTAGGTGAATTTTTTTGTCCATGCCAAGAAAAATACAAGGATCGCGTCTACGA
586 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* * * * * *
16555709 AGTTTGGGGCCAAAACTACTTTCGGAAGAATTTTAAAAAAT-CTGAACCGGGAAAAAGTTTCAAA
651 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACC-GTAAAAAGTTTCAAA
* * * *
16555773 AAT-AGTGAAAAATAGAAAACGAGTCATCATGCCATGAAACATCACGTGAAGCCTTAAGGGACCA
715 AATCA-TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* *
16555837 TTGTATGAATTTACAAGTCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACC
779 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
* * * * **
16555902 CACCTACCACCCTATCGATCCACGACTTACGCATCCTGTCTCTCTGGCCGACATAACGCCCCC
844 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG-CGT-A-GTGCCC
* *
16555965 GCCGCCCGCTCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
1 GCC-CGC-CT-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * * * * * * *
16556030 TAAGATCGGA-TCAGACCGAGGGTTGCGGTAGTAGGATCGACAGCATGCAGAGGAGGACCAGGCC
63 TAAGATCAGACT-GGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACC
* * * * * * * *
16556094 AATCCCTGGCTTGC-AATCACGACCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTT
127 GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* *
16556158 GACTTAGGCATACGGAGTTTATTCCCAGTCTAAGCGTACGGAGTTCATTCCCAGTCTAAGATCGG
192 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* * *
16556223 ACCGGATCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGACGCATTTTTCTTC
257 ACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
** * ** * *
16556288 ACCGGGGTACCATCATCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC
322 GTCGGGGCACCATCGCCGGAGCATCACTGGAGAACCTGACCGGCGGCATTGGGGTTCTGACGATC
* * * * *
16556353 GGCGGGGCC-AGGGGGTGTAG-ACACTTGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTG
387 GGGGGGGCCGGGGGGGTGT-GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
*
16556416 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAG
451 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
*
16556481 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAACGGGGACACTTTTTTCAAATGGTCACAAAATC
516 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
*
16556546 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-TGCATGCCAAAAAAAATACAAGGATCACGTC
581 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
** * *
16556610 TACCAAGTTTGGGGAGAAAACGCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTT
646 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
* ** * * *
16556675 CGAAAATCATGAAAAATAGAAATTGAGTCATCTTGCCATGAAACTTCATGTGAAGGCTTAAAGGA
711 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
** *
16556740 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTAACACGCAGAAATATGAAGATGTGCCTAA
776 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
* *
16556805 ACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGACATAGTGCCC
841 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG-CGTAGTGCCC
* * * * * *
16556869 GCCTGCCCGCTCGCCCGTTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
1 GCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * ***
16556934 GATCAGACCGGACCAAGGGTTGTGGTGGCAGGATCGGCAGCACGTAGAGGAGGACCCGGTTGATC
66 GATCAGACTGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATC
* * *
16556999 CCCAGCTTGCGCATCCCGCCCCTCTGGCCTACTGAGCGCCCGCACACTCGTTTCGTGGGTTGACT
131 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
* * *
16557064 TAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
196 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG
* * * * * * * * *
16557129 GATCGAGAGTTACGGTAGCACATGCTAGGCTTGGGCATGTGCTGGAGCCGTATTTTTCTTCGCCG
261 GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
* * * * * ** *
16557194 AGGCACCATCACCGAAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTT-TCGGTGATCTGG
326 GGGCACCATCGCCGGAGCATCACTGGAGAACCTGACCGGCGGCATTGGGGTTCT-GACGATCGGG
*
16557258 GGGGCCGAGGGGCGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCATTATATTGGC
390 GGGGCCG-GGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* *
16557323 CCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAACATTTGAGATTTTACAGGT
453 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* * *
16557388 TTGCTTCCAGTAGCCATTAAAGTTTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTT
518 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
** * * * *
16557453 GTACAC-TCTGAGTTTTTAGCAAAATTTTTTTGTCCATGCAAAAAAAAAAATGCAAGGATCACGT
583 GTACACTTC-GAGTTTTTAGCTGAATTTTTTTGTGCATGC--CAACAAAAATACAAGGATCACGT
* * * ** * ** *
16557517 CTACTAAGTTAGGGGCCAAAAATAATT-CGAAAAAAATTTAAAAAATCTTGAACCGCAAAAAGTT
645 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTT
* * * * **
16557581 TCGAAAATCCTGAAAAATAGAAAATGACTCGTCTTGCCATGAAACAGCACGTGAAGGCTTAAGGG
710 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* * * * *
16557646 ACCATTGTATGAATTTACAAGCCAT-AAAATGGTATTGGCACGTAGAAGTATGAAGATGTGCTTA
775 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
* * * *
16557710 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTAGCCGACGCAATGCCC
840 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG-CGTAGTGCCC
* * * *
16557775 G--C-CC-GCCCACCCGCTTGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAA
1 GCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** * * * * *
16557836 GATCAGA-TCAGACCGAGGGTTGCAGCAGCAGGATCGATAGCATGTAGAGAGGGACCTGACTGAT
66 GATCAGACT-GGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGAT
* * * *
16557900 CCCTGGCTTGCGCATCCCGTCCCTCTGGCC-AGCTGAGCGCCCGCACACTTGTTTCGTGGGTTGA
130 CCCCGGCTTGCGCATCCCGCCCCTCTGGCCGA-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA
* * *
16557964 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTATAAGATCAGAT
194 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* * * * * *
16558029 CGGATCAAGGGTTGTGGCAGCACATACTGGGCTCGGGCTTGTGCTGGTGCCACATTTTTCTTCGT
259 CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
* * * * *
16558094 CGGGGCACCATCGCCGGAGCTTC-GTCAGAGAACCTGACCGGTGGCATTGGCG-T-T--C---C-
324 CGGGGCACCATCGCCGGAGCATCACT-GGAGAACCTGACCGGCGGCATTGGGGTTCTGACGATCG
* ** *
16558150 -GGTGATC--GGGGG-GTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGC
388 GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
*
16558211 CCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
453 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
16558276 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
518 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * * *
16558341 GTACACTTTGAGTTTTTAGCTGAATTTTTTCGTGCATGCCAACAAAATTACAAGGATCCCGTCTA
583 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* * **
16558406 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAATCCCGAACCGCAAAAAGTTTTG
648 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCA
* * *
16558471 AAAATCGTGAAAAATACAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACC
713 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* *
16558536 ATTGTTTGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAAC
778 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
* *
16558601 CCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCTAGCGTAGTGCCC
843 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC-CGCGTAGTGCCC
* * * *
16558663 GCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTCGTTTAGGCATACGGAGTTCATTCCCAGTCTAA
1 GCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * ** ** * *
16558728 GATTAGACTGAACTGAGGGTTGCGATAGCAGGATCAACAGCACATAGAGAGGAACCC-AGCCGAT
66 GATCAGACTGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-CCGAT
* * ** ** * * *
16558792 CCCCGGCTTGCGCATCCTGGCTGTCTGGCCGGTTGAGCACTCGCAGGCTCGTTTCGTGGGTTGAC
130 CCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
* * *
16558857 TTAGGCATACGGAGTTCATTCCTAATCTAAGCATA-GGAGTTCATTCCCAGTCTAAGATCGAACC
195 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * * ** * *
16558921 GGACCGAGGGTTACGACAGCACATGCTGGGCTTGGGCATGTGCTGGTAACGCATTTCTCTTCATC
260 GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* ** * * * *
16558986 GAGGCACCATCGCTAGAGCATCACCGGAGAACCTGACCGGCGGCATTGTGGTTCTGATGATCGGA
325 GGGGCACCATCGCCGGAGCATCACTGGAGAACCTGACCGGCGGCATTGGGGTTCTGACGATCGGG
* *
16559051 GGGGCCGGGGGGGTGTACGCACTTGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
390 GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* * ** *
16559116 CTTATCCCTCATCAAACCTTGAGAACTCACACCCCCTT-AATTGCATTTGAGATTTTACAAGTTT
455 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* *
16559180 GCTTCCAGTAGCCATTAAAGTGCCTGAAATGGGGACA-----TTCAAATGGTCACAAAATCTTGT
520 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * * *
16559240 ACACTTCAAGTTTTTA-CGTGAATTTTTTTATGCATGCGAAAAAAAATACAAGGATCACGTCTAC
585 ACACTTCGAGTTTTTAGC-TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
* ** * *
16559304 CAAGTTTGGGGCCAAAACTCCCTCCGAAAATTTTTTTAAAAATCCCGAACCTTAAAAAGTTTCAA
649 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAA
* *
16559369 AAATCATGAAAAATAGAAGACGAGTCGTCTTGCCATGAAACTTAACGTGAAGGCTTAAGGGACCA
714 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
16559434 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
779 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
* *
16559499 CACCTAACACCCTATCGATCCACGGCTTGCGCATCCCGTCCCTCTGGCCTGCGTAGTGCCC
844 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-GCGTAGTGCCC
* * * ** *
16559560 GCCCGTCTGCCCGCCCGCTTGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCATAGTCAAA
1 GCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
16559625 GATCAGACCGGACTGAGGGTTACGATAGCAAGATCAGCAGCACGTAGAGGGGGACCCGACCGATC
66 GATCAGACTGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATC
* * * * * *
16559690 CCCGGCTTGTGCATCCCGCCCCTTTGGCGGACTGAGCGCCCGCATGCTCATTTCGTGGGTTGACG
131 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
*
16559755 TAGGCATATGGAGTTCATTCCCAG--T---C-TA---AG---------A-TCT-A-AT-----CG
196 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG
* *
16559794 GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTAGTGCCGTATTTTTCTTCGTCG
261 GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
* * * * * ** **
16559859 GGGTACCATCACCAGAGCATC-GTCGGAGAACCTGACAGGCAACATTGGGGTTCCAACGATCGGG
326 GGGCACCATCGCCGGAGCATCACT-GGAGAACCTGACCGGCGGCATTGGGGTTCTGACGATCGGG
* * * * *
16559923 GGGGCC-GGGGGGTGTGCGCACATGATGTACGATAGGTGGTAGTACTTGGCCCTTATATTGGGCC
390 GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* * *
16559987 CTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTCAAGAGCATTTGAGATTTTATAGGTTT
455 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * *
16560052 GCTGCCAGTAGCTATTAAAGTGTCTAAAATGGTGACACTTTTTTCAAATGGTCACAAAATCTTGT
520 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * * * * ****** *
16560117 ACACTTCAAGATTTTCA-CTGTATTTTAATGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCG
585 ACACTTCGAG-TTTTTAGCTGAATTTT--T---T------TGTGC--ATGCC-AACAAAAATAC-
** ** * ** * * * * * ** * * ***
16560181 TCGGGGCACCATC-ATCGGAGCATCGTCGG--AGAA--CCTGACCGACGACATTGGGGCTCAGGT
634 AAGGATCA-CGTCTA-CCAAG-TTTG-GGGCCAAAACTCCT-TCCGAAAAAATT-----TTAAAA
* * **** ***** * ** * * **** **** * * * *
16560241 GAT-CGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGAT-GGGTGCTAGTAC-T-TGGCCCTT
689 AATCCCGAACCGT-AAAAAGT-TTCAAAAATCATGAAAAATAGAAAACGAGT-CGTCTTGCCATG
* * * *** * **** * * * ** * *
16560302 ATA-TTGGCCCCCT-ATCCCTCATCAAACC-TTG--GGAACTCACACTCCCTAAAAA-AGCATT-
751 AAACTT---CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * * * * * * * *
16560360 ---TG-AG--ATTTTACAGGTTTGCTGCC-AGTAGCCA-TTA--A-ACTGTCTGA--AATGG---
813 GCATGCAGAAATATGA-A-G-ATG-TGCCTA-AACCCACCTACCACCCTATC-GATCCACGGCTT
* * * * * * ** * **
16560409 G-G-A-CACTTTTTTCAAATGGTCACAAAAT-CTT
872 GCGCATCCCGTCTCTC---TGGCCGCGTAGTGCCC
** * * ******* ** * ** * ** *** *
16560440 GTACACTTTGAGTTTTTAGCT-GAATTTTTTTATGCATGCCAAAAAAAATACAAGGA-TCACATC
1 GCCCGC-CTG-CCCGCCCGCTCG---TTTCGT-CGGTTGGC-TTAGGCATAC--GGAGT-TCAT-
* * ** ** * * *** * *** * ** ** ** ** *
16560503 TACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATT---TTAAAAAAATTCCAAACCGAAAAAG
55 T-CCCAGTCTAAGATC-AGACT-GGACC--GAGGGTTGCGGTAGCAGGA-T-C--GGC-AGCACG
* *** *** * * ***
16560565 TTTCAAAAATTGTGAAAAATAGAAAACGAGT---CGTCTTGC-CAT---GAAACT-T---C-ACG
110 ---C--AGA--G-GGGGACCCG--ACCGA-TCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGAC-
** * * ** ** * * * * * * **
16560618 TGAAG-G-CTTCAGGGAC-CATTGTAATGAATTTAC-AAGCCATA--AAATGGCATTGGCA-TGC
163 TG-AGCGCCCGCA-CG-CTCGTT-TCGTGGGTTGACTTAGGCATACGGAGT-TCATTCCCAGT-C
* * * * ** * * * ** * * *
16560676 -AGGAATATGAAGATGTGCCTAAACCCA-CCTAACCACCCTATC-GATCC-ACGGCTTGC-GCAT
222 TAAGCATACG--GA-GT-TC-ATTCCCAGTCTAA-GATCGGACCGGA-CCGA-GGGTTGCGGCAG
* * * ** * *** * *
16560736 CCCGT-CT--CCTCTGGCCAGCATAGTGCCCG-CCCGC-CCCTTCGTTTCGTCGGTTGACTTAGG
279 CACATGCTGGGCTC-GG---GCAT-GTGCTGGTGCCGCATTTTTC--TTCGTCGG--GGC--A-C
* * * *
16560796 CAT--ACGGAGTTCATTCCCAGTCT-AAG-ATCAGA-C--CGG-ATTCGAGGGTTGCAGTAGCAC
332 CATCGCCGGAG--CA-T--CA--CTGGAGAACCTGACCGGCGGCATT-G-GGGTT-C--T-G-AC
* *** * * * * *
16560853 -ATAAAGGGGGACCCGGCCGATCCCCGGCT-TGCGCATCCTGCCCCTCTGGCCGGCTGAGCACCC
383 GAT--CGGGGG----GGCCG---GGGGGGTGTGCGCA-CATG---ATGT-G-C-GATG-G-----
** * ** ** * * **** * * *
16560916 CCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTC-ATTCC-CAGTCTAAGCATACG-GA
426 --GTGCTGGTACT-T-GG--CCCTTA--TAT-TGGCCCCCTATCCCTCA-TC-AAACCT-CGAGA
** ** ** * ** * * * ***
16560978 GTTCATTCCCAGTCT-AAGATCAGACTG-GA--CT-GAGG---GTTG-CAGTAGCACA-TGCTG-
479 ACTCACACCCCCT-TAAAGAGCA-TTTGAGATTTTACAGGTTTGCTGCCAGTAGC-CATTAAAGT
* * * * *** * * * **
16561032 GGCTCGAGCATGTGCTAGTGCCGCATTTCTCTTCATCGGGGCAC--CATCGTTGGAGCATCACCG
541 GTCT-GA-AATG-G---G-GACAC-TTT-T-TTCAAATGGTCACAAAATC-TTGTA-CA-CTTC-
*** * * * * ** ******** * *
16561095 GAGAACCTGACCGGTGGCATTGGGGTTCCG-GCGATCGGGCGGGCCGGGGGGGCTGTGCGCACAT
592 GAG-TTTTTA--GCT-GAATT---TTTTTGTGC-AT-------GCC--AACAAAAAT--ACA-AG
** * ** * ** * * ** * ** **
16561159 GATGTGCGATGCGT-GCTGGTGCTT-GGCCCTTATATTGGCCCCCTATCCCTCATCAGA-CCTCG
637 GAT-CACG-T-C-TACCAAGT--TTGGGGCC--A-A---AACTCCT-T-CC-GAAAAAATTTTAA
* * * * *** ***
16561221 ACAA-CCC-ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAA
687 AAAATCCCGA-A---CCGTAAAAAG--TTTCA-AAAAT-CA----TG--AAAAATAG--A--AAA
* * * * ** ** **
16561284 -GTGTCTGAAAT-TTGGACACTTTTTTCAAA-TGGTCAC--AAAATCTTGTACACTTTGA-GTTT
734 CGAGTC-G---TCTT-G-C-C----ATGAAACT--TCACGTGAAGGC-T-TA-A--GGGACCATT
* * * * * * ** ** * *
16561343 TTAGCTGAATTTTTTGTGCATGCCAAAAAAAAT-ACA-AGG-AT-CACG-TCTACCAAGTTTGGG
781 GTA--TGAA----TT-TACAAGCC-ATAAAAATGGCATTGGCATGCA-GAAATATGAAG-AT-GT
*** ** ** *** *** * * ** ** ****
16561403 GAGAAAAATCTTTCCA-AAAAAATTTTAAAAAATCC-TGAAC-TGCAAAAAGTTTCGAAAATCAT
835 G-CCTAAA-C---CCACCTACCACCCT-ATCGATCCACG-GCTTGC--GCA-TCCCGTCTCTC-T
***** ****
16561465 -GAAAAATAGAAAAC
889 GGCCGCGTAGTGCCC
* * ** ** * ** * * *** * *
16561479 G--AGTCAT-CTTGCCACGAAAC--TTC-ACGTGAAGGCTTAAGGGA-CCATTGTCTGAATTTAC
1 GCCCG-CCTGCCCGCC-CG-CTCGTTTCGTCG-GTTGGCTT-AGGCATACGGAGT-T-CA-TTCC
* * ** * * * * * *
16561537 AAGCCATAA-A--A-A-TGGAATTG-GCG-TGCAGAAATATG-AAGAT-GTGCCTA-AACCCA-C
58 CAGTC-TAAGATCAGACTGG-ACCGAGGGTTGC-G--GTA-GCAGGATCG-G-C-AGCACGCAGA
***** * * * * * * * * * * * *
16561591 CTACCACCCTATCTATCCACGGCTCGCACATCTCGTCTCGCTGGCCGAC-GTAGTGCCCGCCCG-
114 GGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTG-AGCGCCCGCACGC
* * * *
16561654 TCCG-CTCGCT-CGTT-TCGTT-GG--T--TG-G--C-TT---AG-----GCATACGGAGTTCAT
178 T-CGTTTCG-TGGGTTGAC-TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * *
16561699 TCCCAGTCTCAGATCGGACTGGACCGAGGGTTGCGGTAGCACATCCTGGGCTCGGGCATGTGCTG
240 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * * ** * *
16561764 GTGCCGCGTTTTTCTTCATCGGGGCACCATCACCAAAGCATC-GTCGGAGAACCTGACCGGCGAC
305 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACT-GGAGAACCTGACCGGCGGC
* *
16561828 ATTGGGGTTCCT-ACGAT-GGGGGGGCCGGGGAGGGTGTGCGAACATGATGTGTGATGGGTGCTG
369 ATTGGGGTT-CTGACGATCGGGGGGGCCGGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTG
** *
16561891 GTACTTGGCTGTTATATTGGCCCCCTATCCCTCATCAAAACTCGAGAACTCACACCCCCTTAAAG
432 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
16561956 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
497 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * * *
16562021 TTCAAATGGTCACAAAATGTTGTACACTTTGAATTTTTAGCTGAATTTTTTTGTGCATGCCAAAA
562 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* * * **
16562086 AAAATACAAGGATCACGTTTTCCAAGTTTGGGGCTAAAAAGCCTTCCGAAAAAATTTTAAAAAAT
627 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* * ** * *
16562151 CTCAAACCGTAAAAAGTTTTGAAAATCTTGAAAACTAGAAAACGAGTCGTCTTGCCATGAAACTT
692 CCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
*
16562216 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAACCCATAAAAATGGCATTGGCAT---GA
757 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
* *
16562278 AATATGAAGATGTGCCTAAACCTACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCT
822 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
** *
16562343 CTGGTTGGTGTAGTGCCC
887 CTGG-CCGCGTAGTGCCC
* * * *
16562361 G--C-CC-GCCCGCTCGCTTGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCTAGTCTAA
1 GCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * *
16562422 GATCGGACCGGATCGAGGGTTGCGGCAGTACGATCGGCAGCACGTAGAGGGGGACCCGGCCGATC
66 GATCAGACTGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATC
* * * *
16562487 CCCGGCTTGCGCGTCCTGCCCCTCTAGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGCTTGACT
131 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
* * * * * *
16562552 TAGGCATACGAAGTTCATTCCCAGTCTATGCATACGGAGTTCATTCCCAGTATAAGCTCAGATCG
196 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG
* * * * * * *
16562617 AATCAAGGGTTGTGGCAGCACATACTGGGCTCGGGCTTGTGCTGGCGCCGCATTTTTCTTCGTCG
261 GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
* * * * *
16562682 GGGCACCATCGTCGGAGCTTCACCGGAGAACCTGACCGGTGGCATTGGCGTTC---CGAT-----
326 GGGCACCATCGCCGGAGCATCACTGGAGAACCTGACCGGCGGCATTGGGGTTCTGACGATCGGGG
** *
16562739 -GATC--GGGGG-GTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
391 GGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
16562800 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
456 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* * ** *
16562865 CTGCCAGTAGCAATTAAAGTGTTTCTAATGGGGACACTTTTTTCAAATGGTCATAAAATCTTGTA
521 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * * * *
16562930 CACTTCTAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACATCTACTA
586 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* * *
16562995 AGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATTCCAAACCGTAAAAAGTTTCAAAA
651 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAA
** *
16563060 ATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTCAGGGACCATT
716 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
*
16563125 GTATGAATTTACAAGCCAT-AAAATGGCATTGGCATGCAGGAATATGAAGATGTGCCTAAACCCA
781 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
16563189 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCC
846 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-GCGTAGTGCCC
* *
16563248 G--C-CC-G--C-CCC-TTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
1 GCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
16563305 GATCAGACCGGATCGAGGGTTGCAGTAGC---A----CA-TA---A-AGGGGGACCCGGCCGATC
66 GATCAGACTGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATC
* * *
16563358 CCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCC-CACGCTCGTTTTGTGGGTTGACT
131 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
* * * * *
16563422 TAGGCATACAGAGATCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCAAAGATTGGACCG
196 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG
* * * * * **
16563487 GACCGAGGGTTACGGTAGCACA-ACTTGGGCTCGGGCATGTG-TCGATGCCGTATTTTTCTTCAC
261 GACCGAGGGTTGCGGCAGCACATGC-TGGGCTCGGGCATGTGCT-GGTGCCGCATTTTTCTTCGT
** * * * * * * *
16563550 CGGTCCACCATCGTCGGAGCATCGCCGAAAAACCTGACTGACGGCATTGGGGTTC---CGAT---
324 CGGGGCACCATCGCCGGAGCATCACTGGAGAACCTGACCGGCGGCATTGGGGTTCTGACGATCGG
** * *
16563609 ---GATCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTAGCCCTTATATTGGCC
389 GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
*
16563671 CCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
454 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
*
16563736 TGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
519 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * * *
16563801 TACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAAAAAAAATAGAAGGATCATGTCTAC
584 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
* * * * **
16563866 CAAGTTTGGGGCAAAAAATCCTTCCGAAAAAATTTTAAAAAATCTCAAACCGTAAATTGTTTCAA
649 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAA
* * * *
16563931 AAATCGTGGAAAATAGAGAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCA
714 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* * *
16563996 TTGTATGAATTTACAAGCCATAAAAATGGCATTTGCAAGCAGAAATATGAAAATGTGCCTAAACC
779 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
* *
16564061 CACCTACCATCCTATAGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC
844 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-GCGTAGTGCCC
* * *
16564122 GCCCACCTATCCGCCCGCCCGCTCGTTTCGTCGGTTGGTTTAGGCATACGGAGTCCATTCCCAGT
1 GCCCGCC--T--GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* * * *
16564187 CTAAGATCAGA-TCAGACCGAGGGTTGCAGTAACAGGATCGGTAGCACGCAGAGGGGGACCCGAC
62 CTAAGATCAGACT-GGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGAC
* * * * *
16564251 CGATCCCCGGCTTGTGCATCCCGCCCCTCTGGTCGGCTGAGAGACCGCACGCTCGTTTCGTGGGT
126 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGT
* *
16564316 TAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTG
191 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
** * * * * *
16564381 GACCAAACCGAGGGCTGCGGTAGCACATGCTAGGCTTGGGCATGTGCTGGTGCCGTATTTTTCTT
256 GACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
* * * * * * *
16564446 CGTCGAGGCACCATCGTCGGAGCATCGCTGGAGAACCTGACCGACGACATTGGGATT-TCGATGA
321 CGTCGGGGCACCATCGCCGGAGCATCACTGGAGAACCTGACCGGCGGCATTGGGGTTCT-GACGA
* * * * *
16564510 TCGAGGGTGCCGGGGGGGGCGTGCGCACATGATGTGTGATGGGTGCTGGTACTCGGCCCTTATAT
385 TCGGGGGGGCC-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* * *
16564575 TGGCCCCCTATCCCTCATCAAACCTGGAGAACTCACACCCCTTTAAAGAGCACTTGAGATTTTAC
449 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
*
16564640 AGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
514 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* ** * * *
16564705 TATTGTACACTTCGAGTTCCTAGCTTAATTTTTTTGTCCATGCCAACAAAAATAGAAGGATCACG
579 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
*
16564770 TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA-TTTAAAAAATCCCAAACCGTAAAAAGT
644 TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGT
* *
16564834 TTCAAAAATCATGAAAAAAAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
709 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
*
16564899 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCT
774 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT
* * *
16564964 AAACCCACCTACCACCCTATCAATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGATGTAGTGCC
839 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG-CGTAGTGCC
16565029 C
903 C
** *
16565030 G--C-CC-GCCCGCCCTTTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
1 GCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
** ** ** * * * * *
16565091 GATTGGACCAGACTAAGGGTTGCGGCAGCAGGATCGGCAACATGCAGAGGGGGACCCGATCAATC
66 GATCAGACTGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATC
** * * * *
16565156 CTTGGCTTACGCATCCCGCCCCTCTGGCC-AGCTGAGAGCCCGCACACTCGTTTCGTGGGTTAAC
131 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGA-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
* * *
16565220 TTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGTAGTTCATTCCCAGTCTAAGATCAGACC
195 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * * * *
16565285 GAACCGAAGGTTACAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTC
260 GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* * ** * *
16565350 GGGGCACCATCGTCGGAGCATCGCAT-GAGAACCTGACCCCCGGCATTGGGGTTC-CAGCGATTG
325 GGGGCACCATCGCCGGAGCATCAC-TGGAGAACCTGACCGGCGGCATTGGGGTTCTGA-CGATCG
* *
16565413 GGGGTGCC-GGGGGGTGTGCGGACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
388 GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
*
16565477 CCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
453 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
*
16565542 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTT
518 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * * *
16565607 GTACACTTCGAGTTCTTAGCTGAATTTTTTTTGTGCATACCAGCAAAACTACAAGGATCACGTCT
583 GTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * *
16565672 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTGAAAACATCCCGAACC-TCGAAAAGTTT
647 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGT-AAAAAGTTT
* * *
16565736 CAAAAATCGTGAAAAATAGAAAACGAGTCGCCTTGCCGTGAAACTTCACGTGAAGGCTTAAGGGA
711 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* * * *
16565801 CCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGTAGAACTATAAAGATGTGCCTAA
776 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
* *
16565866 ACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGGGTAGTGCCC
841 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-GCGTAGTGCCC
* * *** * *
16565930 GCCCGCCCGTCCGTATGCTCGTGTCGTCGGTTGGCTTAGGCATACGTAGTTCATTCCCAGTCTAA
1 GCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * * * * *** * * * * * **
16565995 GATTGGACTAGATCAAAGGTTGCGGCAATGGGATTGACAGCACGTAAAAGGGGACCTAACCGATC
66 GATCAGACTGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATC
* * * * * * *
16566060 CTCGGCTTGCGCATCCAGCCCCTCTGGCCGGCTGAGCGCCTGCATGCTCATTTCGTGGTTTGACT
131 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
* * * * ** *
16566125 TACGCTTACAGACTTCATTCCCAGTCT-AGTCATACAAAGTTCATTCCCAGTCTAAGATCAGACC
196 TAGGCATACGGAGTTCATTCCCAGTCTAAG-CATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * ** *
16566189 AGACTGAGGGTTGCGGTGGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTT
260 GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
** * *
16566254 GGGGCACCATCATCAGAGCATCACTGGAGAACCTGACCGGCGGCATTGGGGTT-TCGACGATTGG
325 GGGGCACCATCGCCGGAGCATCACTGGAGAACCTGACCGGCGGCATTGGGGTTCT-GACGATCGG
* *
16566318 GGGGGCC-GGGGGGTGTGCACACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGG-C
389 GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
16566381 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
454 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
*
16566446 TGCTGTCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
519 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* *
16566511 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACTAGGATCACGTCTAC
584 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
* * * ** * **
16566576 CAAGGTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCTTGAACAGTAAAAAGTTTTGA
649 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAA
*
16566641 AAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
714 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
16566699 AAATGGCATT
Statistics
Matches: 11699, Mismatches: 2019, Indels: 1241
0.78 0.13 0.08
Matches are distributed among these distances:
869 3 0.00
870 174 0.01
871 144 0.01
872 173 0.01
873 370 0.03
874 98 0.01
875 1 0.00
876 6 0.00
877 52 0.00
878 13 0.00
879 65 0.01
880 36 0.00
881 22 0.00
882 19 0.00
883 77 0.01
884 30 0.00
885 376 0.03
886 126 0.01
887 207 0.02
888 312 0.03
889 28 0.00
890 246 0.02
891 359 0.03
892 409 0.03
893 166 0.01
894 27 0.00
895 24 0.00
896 41 0.00
897 831 0.07
898 385 0.03
899 405 0.03
900 889 0.08
901 123 0.01
902 745 0.06
903 259 0.02
904 1561 0.13
905 618 0.05
906 728 0.06
907 291 0.02
908 245 0.02
909 271 0.02
910 4 0.00
911 1 0.00
913 4 0.00
915 2 0.00
917 3 0.00
918 1 0.00
919 1 0.00
920 3 0.00
921 6 0.00
922 2 0.00
923 10 0.00
924 15 0.00
925 22 0.00
926 17 0.00
927 4 0.00
928 1 0.00
929 4 0.00
930 5 0.00
931 8 0.00
932 8 0.00
933 5 0.00
934 8 0.00
935 3 0.00
936 4 0.00
937 7 0.00
938 7 0.00
940 1 0.00
942 7 0.00
945 6 0.00
946 6 0.00
949 7 0.00
950 2 0.00
951 1 0.00
952 6 0.00
953 3 0.00
955 2 0.00
956 2 0.00
957 1 0.00
958 11 0.00
959 13 0.00
960 43 0.00
961 19 0.00
962 7 0.00
963 6 0.00
964 7 0.00
965 8 0.00
966 22 0.00
967 47 0.00
968 13 0.00
969 11 0.00
970 2 0.00
971 5 0.00
972 3 0.00
973 3 0.00
974 2 0.00
975 10 0.00
976 3 0.00
977 3 0.00
978 4 0.00
980 1 0.00
981 6 0.00
982 8 0.00
983 5 0.00
984 2 0.00
985 2 0.00
986 5 0.00
987 8 0.00
988 3 0.00
989 3 0.00
990 2 0.00
991 4 0.00
992 6 0.00
993 4 0.00
994 8 0.00
995 8 0.00
996 5 0.00
997 5 0.00
998 2 0.00
1000 12 0.00
1001 26 0.00
1002 16 0.00
1003 5 0.00
1004 5 0.00
1005 3 0.00
1006 7 0.00
1007 3 0.00
1008 5 0.00
1010 2 0.00
1011 4 0.00
1012 3 0.00
1013 2 0.00
1014 9 0.00
1015 6 0.00
1018 4 0.00
1019 3 0.00
1020 9 0.00
1021 12 0.00
1022 4 0.00
1023 13 0.00
1024 171 0.01
1025 239 0.02
1026 182 0.02
1027 388 0.03
1028 156 0.01
1029 156 0.01
1030 182 0.02
1031 192 0.02
1032 217 0.02
1033 159 0.01
1034 97 0.01
1035 140 0.01
1036 114 0.01
1037 68 0.01
1038 109 0.01
1039 125 0.01
1040 119 0.01
1041 78 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (903 bp):
GCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
GATCAGACTGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATC
CCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG
GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
GGGCACCATCGCCGGAGCATCACTGGAGAACCTGACCGGCGGCATTGGGGTTCTGACGATCGGGG
GGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAA
ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGCGTAGTGCCC
Found at i:16555307 original size:26 final size:26
Alignment explanation
Indices: 16555259--16555311 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16555249 GTTGACTTAG
*
16555259 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
* *
16555285 GCATACGGAGTTCACTGCTAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
16555311 G
1 G
16555312 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:16556197 original size:26 final size:26
Alignment explanation
Indices: 16556168--16556217 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
16556158 GACTTAGGCA
*
16556168 TACGGAGTTTATTCCCAGTCTAAGCG
1 TACGGAGTTCATTCCCAGTCTAAGCG
16556194 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
16556218 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCG
Found at i:16557103 original size:26 final size:26
Alignment explanation
Indices: 16557067--16557119 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16557057 GTTGACTTAG
16557067 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
16557093 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16557119 G
1 G
16557120 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16558005 original size:26 final size:26
Alignment explanation
Indices: 16557969--16558021 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16557959 GTTGACTTAG
*
16557969 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTATAA
16557995 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCATTCCCAGTATAA
16558021 G
1 G
16558022 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTATAA
Found at i:16558896 original size:25 final size:26
Alignment explanation
Indices: 16558861--16558912 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
16558851 GTTGACTTAG
*
16558861 GCATACGGAGTTCATTCCTAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
16558887 GCATA-GGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
16558912 G
1 G
16558913 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 19 0.79
26 5 0.21
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:16560979 original size:26 final size:26
Alignment explanation
Indices: 16560943--16560995 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16560933 GTTGACTTAG
16560943 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16560969 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16560995 G
1 G
16560996 ATCAGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16564360 original size:26 final size:26
Alignment explanation
Indices: 16564324--16564376 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16564314 GTTAACTTAG
16564324 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16564350 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16564376 G
1 G
16564377 ATTGGACCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16573352 original size:12 final size:12
Alignment explanation
Indices: 16573335--16573359 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
16573325 CCGGCGTAGT
16573335 GCCCGCCCGTTC
1 GCCCGCCCGTTC
16573347 GCCCGCCCGTTC
1 GCCCGCCCGTTC
16573359 G
1 G
16573360 TTTCGTCGGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.56, G:0.28, T:0.16
Consensus pattern (12 bp):
GCCCGCCCGTTC
Found at i:16573567 original size:26 final size:26
Alignment explanation
Indices: 16573537--16573589 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16573527 GTTAACTTAG
*
16573537 GCATACAGAGTTCATTCGCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
**
16573563 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16573589 G
1 G
16573590 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16575334 original size:26 final size:26
Alignment explanation
Indices: 16575304--16575356 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16575294 GTTGACTTAG
16575304 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16575330 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16575356 G
1 G
16575357 ATCAGATCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16575467 original size:894 final size:895
Alignment explanation
Indices: 16574292--16575993 Score: 2567
Period size: 894 Copynumber: 1.9 Consensus size: 895
16574282 CGCCCGGACT
* * *
16574292 GAGGGTTGCGGCAGCAGGATCGACACACGTAAAAGAGGACCCGGCCGATCCCCGGCTTGCGCATC
1 GAGGGTTGCGGCAGCAGGATCGACACACATAAAAGAGGACCCAGCCAATCCCCGGCTTGCGCATC
* * * * *
16574357 CCGCCCCTCAGGCCGGCTGAGCACCCGCACGTTTATTTCATGGTTTGACTTAGGCATACGGAGTT
66 CCACCCCTCAGGCCGACTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTT
* * * *
16574422 CATTCCCAATCTAAGGAAACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGATGGTTGCGG
131 CATTCCCAATCTAAGCAAACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGG
* * *
16574487 TAGCACATGCTGGGCTCCGGCATGTGCTGGTGCCGCATTTTTCTTCATCGAGGCACCATCGCCGG
196 CAGCACATGCTGGGCTCCGGCATGTGCTGGTGCCACATTTTTCTTCATCGAGGCACCATCGCAGG
* * *
16574552 AGCATCGCCAGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGG-GGGGACAG-GGGGGGT
261 AGCATCGCCAGAGAACCTGACCGACGGCATTAGGGTTCCGACGATCGGAGGGG-CAGAGGGGGGT
16574615 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
325 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
*
16574680 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTTAGATTTTACTA-GTTTGCTGCCA-GTAGC
390 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC-AGGTTTGCTGCCATG-AGC
* *
16574743 CATTAAAGTGTCTGAAATGGGGACA-CTTTTTCAAATGGTCACAAAATCTTATACACTTCGA-TT
453 CACTAAAATGTCTGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTT
* * * *
16574806 TTTAGCTGAATTTTTTTGTGCAT-CCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCT
518 TTTACCTGAATGTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* **
16574870 AAAACTCCATCTGAAAAAGTTTTAAAAAATCCCAAACCGAAAAAAAGTTTTGAAAATCGTGAAAA
583 AAAACTCCATCTGAAAAAATTTTAAAAAATCCCAAACCG-AAAAAAGTTTCAAAAATCGTGAAAA
* * * *
16574935 ATAGAAAATGAGTCGTCTTGCCATGAAACTTCATGTGAAAGCCTAAGGGACCATTGTTTGAATTT
647 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAAGCCTAA-GGACCATTCTATGAATTT
* *
16575000 ACAAGCCATAAAAATGGCATTGGCACGTAGAAATAT-AAGGATGTGCCTAATCCCACCTACCAAC
711 ACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAA-GATGTGCCTAAACCCACCTACCAAC
* *
16575064 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTACCCTCCCGCCCACCCGTT
775 CTATCAATCCACGGCTTGCGCATCCCGTCACTCTGGTCGGCGTAGTACCCTCCCGCCCACCCGTT
16575129 TCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGATC
840 TCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGATC
* * * * * * **
16575185 GAGGGTTGTGGCAGCAGGATCGGCAGCACATAGAGGGGGACTCAGCCAATCCTTGGCTTGCGCAT
1 GAGGGTTGCGGCAGCAGGATCGACA-CACATAAAAGAGGACCCAGCCAATCCCCGGCTTGCGCAT
* * * * *
16575250 CCTACCCCTCTGGCCGACTGAGCGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGT
65 CCCACCCCTCAGGCCGACTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGT
* * * *
16575315 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTTCG
130 TCATTCCCAATCTAAGCAAACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCG
** * * * *
16575380 GCAGCACATGCTGGGCTTGGGCATGTGCTGGTGTCACTTTTTTCTTCGTCGGGGCACCATCGCAG
195 GCAGCACATGCTGGGCTCCGGCATGTGCTGGTGCCACATTTTTCTTCATCGAGGCACCATCGCAG
* * *
16575445 GAGCATCG-CTGAAGAACCTGACCGATGGCATTAGGGTTCCGACGATCGGAGGGGCCGAGGGGGG
260 GAGCATCGCCAG-AGAACCTGACCGACGGCATTAGGGTTCCGACGATCGGAGGGGCAGAGGGGGG
* *
16575509 TGTGCGCACATTATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTGTCCCTCATC
324 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
16575574 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCATGAGCC
389 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCATGAGCC
* *
16575639 ACTAAAATGTCTGAAATGGGGACACCTTTTTCCAATGGTCACAAAATCTTGTACACTTCGAGTTT
454 ACTAAAATGTCTGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTT
*
16575704 TTACCTGAATGTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCA
519 TTACCTGAATGTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * *
16575769 AAACTCCCTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAAT
584 AAACTCCATCTGAAAAAATTTTAAAAAATCCCAAACCGAAAAAAGTTTCAAAAATCGTGAAAAAT
* * *
16575834 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGACCTTTCTATGAATTTACA
649 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAAGCCTAAGGACCATTCTATGAATTTACA
* * *
16575899 AGCCATAAAAATGGCATTGTCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
714 AGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTAT
* *
16575964 CAATCCATGGCTTGCGTATCCCGTCACTCT
779 CAATCCACGGCTTGCGCATCCCGTCACTCT
16575994 CATTTCGTGG
Statistics
Matches: 721, Mismatches: 78, Indels: 17
0.88 0.10 0.02
Matches are distributed among these distances:
893 25 0.03
894 242 0.34
895 155 0.21
896 136 0.19
897 89 0.12
898 74 0.10
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (895 bp):
GAGGGTTGCGGCAGCAGGATCGACACACATAAAAGAGGACCCAGCCAATCCCCGGCTTGCGCATC
CCACCCCTCAGGCCGACTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTT
CATTCCCAATCTAAGCAAACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGG
CAGCACATGCTGGGCTCCGGCATGTGCTGGTGCCACATTTTTCTTCATCGAGGCACCATCGCAGG
AGCATCGCCAGAGAACCTGACCGACGGCATTAGGGTTCCGACGATCGGAGGGGCAGAGGGGGGTG
TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCATGAGCCAC
TAAAATGTCTGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTT
ACCTGAATGTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
ACTCCATCTGAAAAAATTTTAAAAAATCCCAAACCGAAAAAAGTTTCAAAAATCGTGAAAAATAG
AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAAGCCTAAGGACCATTCTATGAATTTACAAG
CCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCA
ATCCACGGCTTGCGCATCCCGTCACTCTGGTCGGCGTAGTACCCTCCCGCCCACCCGTTTCGTCG
GTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGATC
Found at i:16577610 original size:26 final size:26
Alignment explanation
Indices: 16577574--16577626 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16577564 GTTGACTTAG
*
16577574 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16577600 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16577626 G
1 G
16577627 ATTGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16577746 original size:185 final size:184
Alignment explanation
Indices: 16577415--16577804 Score: 485
Period size: 185 Copynumber: 2.1 Consensus size: 184
16577405 GTTGGCTTAG
* **
16577415 GCATACGAAGTTCATTCCCAGTCTAAGATTAGACCAGACTGAAGGTTGTGGTAGCAGAATCGACA
1 GCATACG-AGTTCATTCCCAGTCTAAGATTAGACCAGACCGAAGGTTGCAGTAGCAGAATCGACA
* *
16577480 GCACATAGAGGGGGACCCGGATGATCCCCGACATGCGCATCCTACCCCTTTGGCCGACTGAGCGC
65 GCACACAGAGGGGGACCCGGATGATCCCCGACATGCGCATCCTACCCCTCTGGCCGACTGAGCGC
* * *
16577545 CCGTATGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAA
130 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* ** * * * **
16577600 GCATACAGAGTTCATTCCCAGTCTAAGATTGGACTGGACCGAGGGTTGCAGTAGCAGGATTGGTA
1 GCATAC-GAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAAGGTTGCAGTAGCAGAATCGACA
** * * * * * * *
16577665 GCATGCAGAGGTGGACCC-GACTGATCCTCGGCTTGCGCATCCTGCCCCTCTGGTCGGCTGAGCG
65 GCACACAGAGGGGGACCCGGA-TGATCCCCGACATGCGCATCCTACCCCTCTGGCCGACTGAGCG
* * *
16577729 CCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTTAA
129 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
16577785 GCATACGGAGTTCATTCCCA
1 GCATAC-GAGTTCATTCCCA
16577805 ATTTAAGCAT
Statistics
Matches: 174, Mismatches: 29, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
184 2 0.01
185 171 0.98
186 1 0.01
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.25
Consensus pattern (184 bp):
GCATACGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAAGGTTGCAGTAGCAGAATCGACAG
CACACAGAGGGGGACCCGGATGATCCCCGACATGCGCATCCTACCCCTCTGGCCGACTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
Found at i:16577837 original size:26 final size:26
Alignment explanation
Indices: 16577759--16577831 Score: 137
Period size: 26 Copynumber: 2.8 Consensus size: 26
16577749 GTTGACTTAG
16577759 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTTTAA
*
16577785 GCATACGGAGTTCATTCCCAATTTAA
1 GCATACGGAGTTCATTCCCAGTTTAA
16577811 GCATACGGAGTTCATTCCCAG
1 GCATACGGAGTTCATTCCCAG
16577832 CCTAAGATTG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTTTAA
Found at i:16580391 original size:59 final size:58
Alignment explanation
Indices: 16580328--16580565 Score: 322
Period size: 59 Copynumber: 4.0 Consensus size: 58
16580318 GTTCTTGTGT
*
16580328 AGGAAAATTGATACTTTCAACTTTT-CCTCAAAAATATTTTTTTG-AAATTGTGATTTTCA
1 AGGAAAATTGATACTTTCAACTTTTCCCT-AAAAATATTTTTTTGAAAATT-T-ATTTTTA
16580387 AGGAAAATTGATACTTTCAACTTTT-CCTCAAAAACCCT-TTTTTTTGAAAATTTATTTTTA
1 AGGAAAATTGATACTTTCAACTTTTCCCT-AAAAA---TATTTTTTTGAAAATTTATTTTTA
* *
16580447 AGGAAAATTGATATTTTCAACTTTTCCCTAAAAATATTTTTTTTGAAAATTTTTTTTTA
1 AGGAAAATTGATACTTTCAACTTTTCCCTAAAAATA-TTTTTTTGAAAATTTATTTTTA
*
16580506 AGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGGAAATTTTGATTTTTA
1 AGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTT-GAAAATTT-ATTTTTA
16580566 TTTAAAGAGA
Statistics
Matches: 164, Mismatches: 6, Indels: 17
0.88 0.03 0.09
Matches are distributed among these distances:
57 1 0.01
58 7 0.04
59 97 0.59
60 41 0.25
61 12 0.07
62 6 0.04
ACGTcount: A:0.34, C:0.11, G:0.08, T:0.47
Consensus pattern (58 bp):
AGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAAATTTATTTTTA
Found at i:16580539 original size:119 final size:119
Alignment explanation
Indices: 16580328--16580565 Score: 333
Period size: 119 Copynumber: 2.0 Consensus size: 119
16580318 GTTCTTGTGT
16580328 AGGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAAATTGTGATTTTCAAGGAAA
1 AGGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAAATTGTGATTTTCAAGGAAA
* *
16580393 ATTGATACTTTCAACTTTTCCTCAAAAACCCTTTTTTTTGAAAATTT-ATTTTTA
66 ATTGATACTTTCAACTTTTCCTCAAAAA-CATTTTTTTGGAAAATTTGATTTTTA
* * *
16580447 AGGAAAATTGATATTTTCAACTTTTCC-CTAAAAATATTTTTTTTGAAAATT-T-TTTTTTAAGG
1 AGGAAAATTGATACTTTCAACTTTTCCTC-AAAAATA-TTTTTTTG-AAATTGTGATTTTCAAGG
* *
16580509 AAAATTGATACTTTCAACTTTTCC-CTAAAAATATTTTTTTGGAAATTTTGATTTTTA
63 AAAATTGATACTTTCAACTTTTCCTC-AAAAACATTTTTTTGGAAAATTTGATTTTTA
16580566 TTTAAAGAGA
Statistics
Matches: 107, Mismatches: 7, Indels: 10
0.86 0.06 0.08
Matches are distributed among these distances:
118 16 0.15
119 77 0.72
120 9 0.08
121 5 0.05
ACGTcount: A:0.34, C:0.11, G:0.08, T:0.47
Consensus pattern (119 bp):
AGGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAAATTGTGATTTTCAAGGAAA
ATTGATACTTTCAACTTTTCCTCAAAAACATTTTTTTGGAAAATTTGATTTTTA
Found at i:16580616 original size:17 final size:16
Alignment explanation
Indices: 16580580--16580638 Score: 59
Period size: 16 Copynumber: 3.6 Consensus size: 16
16580570 AAGAGAATAG
*
16580580 AATAAATAAAAGT-GAA
1 AATAAAT-AAAGTAAAA
16580596 AATAAATAAAGATAAAA
1 AATAAATAAAG-TAAAA
*
16580613 AATAAAAAAAGTAAAA
1 AATAAATAAAGTAAAA
16580629 CAA-AAATAAA
1 -AATAAATAAA
16580639 AAGAAGATAA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
15 4 0.11
16 19 0.51
17 14 0.38
ACGTcount: A:0.76, C:0.02, G:0.07, T:0.15
Consensus pattern (16 bp):
AATAAATAAAGTAAAA
Found at i:16580635 original size:20 final size:22
Alignment explanation
Indices: 16580610--16580650 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 22
16580600 AATAAAGATA
16580610 AAAAATAAAAA-AAG-TAAAAC
1 AAAAATAAAAAGAAGATAAAAC
16580630 AAAAATAAAAAGAAGATAAAA
1 AAAAATAAAAAGAAGATAAAA
16580651 ATATTAAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 11 0.58
21 3 0.16
22 5 0.26
ACGTcount: A:0.80, C:0.02, G:0.07, T:0.10
Consensus pattern (22 bp):
AAAAATAAAAAGAAGATAAAAC
Found at i:16580650 original size:17 final size:17
Alignment explanation
Indices: 16580594--16580653 Score: 50
Period size: 17 Copynumber: 3.4 Consensus size: 17
16580584 AATAAAAGTG
*
16580594 AAAATAAATA-AAGATAA
1 AAAATAAAAAGAAGAT-A
* *
16580611 AAAATAAAAAAAGTAAAACA
1 AAAAT--AAAAAG-AAGATA
16580631 AAAATAAAAAGAAGATA
1 AAAATAAAAAGAAGATA
16580648 AAAATA
1 AAAATA
16580654 TTAAATAAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
17 15 0.44
18 6 0.18
19 4 0.12
20 6 0.18
21 3 0.09
ACGTcount: A:0.78, C:0.02, G:0.07, T:0.13
Consensus pattern (17 bp):
AAAATAAAAAGAAGATA
Found at i:16580686 original size:4 final size:4
Alignment explanation
Indices: 16580671--16580713 Score: 52
Period size: 4 Copynumber: 10.8 Consensus size: 4
16580661 AATCTAATCT
* *
16580671 AATA AGTA AATA AATA AATCA AACA AATA AATA AATA AA-A AAT
1 AATA AATA AATA AATA AAT-A AATA AATA AATA AATA AATA AAT
16580714 TCTGAAAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
3 3 0.09
4 27 0.82
5 3 0.09
ACGTcount: A:0.72, C:0.05, G:0.02, T:0.21
Consensus pattern (4 bp):
AATA
Found at i:16581586 original size:18 final size:18
Alignment explanation
Indices: 16581542--16581587 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
16581532 AAAGAAAAAA
*
16581542 AAATAATAATCGGATAAAT
1 AAATAA-AATCAGATAAAT
*
16581561 AAAAAAAATCAGATAAAT
1 AAATAAAATCAGATAAAT
*
16581579 GAATAAAAT
1 AAATAAAAT
16581588 AAAATTAACA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
18 18 0.78
19 5 0.22
ACGTcount: A:0.65, C:0.04, G:0.09, T:0.22
Consensus pattern (18 bp):
AAATAAAATCAGATAAAT
Found at i:16581748 original size:28 final size:27
Alignment explanation
Indices: 16581714--16581766 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 27
16581704 ATAGAAAAAA
*
16581714 AATAAATAA-AGATATACATAATAATAAT
1 AATAAATAATA-AAATACATAA-AATAAT
16581742 AATAAATAATAAAATACATAAAATA
1 AATAAATAATAAAATACATAAAATA
16581767 CAAAAGAAGG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
27 4 0.17
28 18 0.78
29 1 0.04
ACGTcount: A:0.68, C:0.04, G:0.02, T:0.26
Consensus pattern (27 bp):
AATAAATAATAAAATACATAAAATAAT
Found at i:16581781 original size:17 final size:17
Alignment explanation
Indices: 16581761--16581803 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
16581751 TAAAATACAT
**
16581761 AAAATACAAAAGAAGGA
1 AAAATACAAAAGAAAAA
* *
16581778 AAAAGAAAAAAGAAAAA
1 AAAATACAAAAGAAAAA
16581795 AAAATACAA
1 AAAATACAA
16581804 GGTAAAAAAT
Statistics
Matches: 20, Mismatches: 6, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.79, C:0.05, G:0.12, T:0.05
Consensus pattern (17 bp):
AAAATACAAAAGAAAAA
Found at i:16581981 original size:10 final size:9
Alignment explanation
Indices: 16581968--16582025 Score: 50
Period size: 8 Copynumber: 6.6 Consensus size: 9
16581958 CATTGTCATT
16581968 TTTTGTTTTA
1 TTTT-TTTTA
16581978 -TTTTTTTA
1 TTTTTTTTA
16581986 TGTTTTTTTA
1 T-TTTTTTTA
*
16581996 TGTTTTTT-
1 TTTTTTTTA
*
16582004 TTGTTTTT-
1 TTTTTTTTA
*
16582012 TTTTTTTTG
1 TTTTTTTTA
16582021 TTTTT
1 TTTTT
16582026 GACCAAAGCT
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
8 18 0.44
9 14 0.34
10 9 0.22
ACGTcount: A:0.05, C:0.00, G:0.09, T:0.86
Consensus pattern (9 bp):
TTTTTTTTA
Found at i:16581993 original size:9 final size:9
Alignment explanation
Indices: 16581973--16582012 Score: 55
Period size: 9 Copynumber: 4.4 Consensus size: 9
16581963 TCATTTTTTG
16581973 TTTTAT-TT
1 TTTTATGTT
16581981 TTTTATGTTT
1 TTTTATG-TT
16581991 TTTTATGTT
1 TTTTATGTT
*
16582000 TTTTTTGTT
1 TTTTATGTT
16582009 TTTT
1 TTTT
16582013 TTTTTTTGTT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
8 6 0.21
9 14 0.48
10 9 0.31
ACGTcount: A:0.07, C:0.00, G:0.07, T:0.85
Consensus pattern (9 bp):
TTTTATGTT
Found at i:16582025 original size:9 final size:9
Alignment explanation
Indices: 16581968--16582019 Score: 61
Period size: 10 Copynumber: 5.6 Consensus size: 9
16581958 CATTGTCATT
*
16581968 TTTTGTTTTA
1 TTTT-TTTTG
16581978 TTTTTTTATG
1 TTTTTTT-TG
16581988 TTTTTTTATG
1 TTTTTTT-TG
16581998 TTTTTTTTG
1 TTTTTTTTG
16582007 TTTTTTTT-
1 TTTTTTTTG
16582015 TTTTT
1 TTTTT
16582020 GTTTTTGACC
Statistics
Matches: 40, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
8 5 0.12
9 13 0.32
10 22 0.55
ACGTcount: A:0.06, C:0.00, G:0.08, T:0.87
Consensus pattern (9 bp):
TTTTTTTTG
Found at i:16582090 original size:41 final size:41
Alignment explanation
Indices: 16582033--16582291 Score: 439
Period size: 41 Copynumber: 6.3 Consensus size: 41
16582023 TTTGACCAAA
* * *
16582033 GCTCCTCTAAACAGAGGCTCAACGACTTTGGAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
* *
16582074 GCTCCTCTAAATAGAGGCACCACGACTTTTGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
16582115 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
*
16582156 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAA-AAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
16582196 GCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTG-GAAAGTAAATT
*
16582238 GCTCCTCTAAACAGAGGCACCACGACTTTTGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
16582279 GCTCCTCTAAACA
1 GCTCCTCTAAACA
16582292 CTTTGCTCCT
Statistics
Matches: 206, Mismatches: 10, Indels: 4
0.94 0.05 0.02
Matches are distributed among these distances:
40 35 0.17
41 137 0.67
42 34 0.17
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.23
Consensus pattern (41 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
Found at i:16582330 original size:58 final size:58
Alignment explanation
Indices: 16582236--16582349 Score: 219
Period size: 58 Copynumber: 2.0 Consensus size: 58
16582226 AGAAAGTAAA
*
16582236 TTGCTCCTCTAAACAGAGGCACCACGACTTTTGAAAGTAAATTGCTCCTCTAAACACT
1 TTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACACT
16582294 TTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACA
1 TTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACA
16582350 GAGGCACCAC
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 55 1.00
ACGTcount: A:0.32, C:0.27, G:0.15, T:0.26
Consensus pattern (58 bp):
TTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACACT
Found at i:16582374 original size:100 final size:100
Alignment explanation
Indices: 16582194--16582391 Score: 371
Period size: 100 Copynumber: 2.0 Consensus size: 100
16582184 TGGAAAAAAA
16582194 TTGCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAGTAAATTGCTCCTCTAAACAGAGGCACC
1 TTGCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAGTAAATTGCTCCTCTAAACAGAGGCACC
*
16582259 ACGACTTTTGAAAGTAAATTGCTCCTCTAAACACT
66 ACGACTTTAGAAAGTAAATTGCTCCTCTAAACACT
16582294 TTGCTCCTCTAAACAGAGGCACCACGACTTTG-GAAAGTAAATTGCTCCTCTAAACAGAGGCACC
1 TTGCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAGTAAATTGCTCCTCTAAACAGAGGCACC
16582358 ACGACTTTGAGAAAGTAAATTGCTCCTCTAAACA
66 ACGACTTT-AGAAAGTAAATTGCTCCTCTAAACA
16582392 GAGGCACCAC
Statistics
Matches: 96, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
99 40 0.42
100 56 0.58
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.24
Consensus pattern (100 bp):
TTGCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAGTAAATTGCTCCTCTAAACAGAGGCACC
ACGACTTTAGAAAGTAAATTGCTCCTCTAAACACT
Found at i:16582385 original size:42 final size:42
Alignment explanation
Indices: 16582294--16582635 Score: 561
Period size: 42 Copynumber: 8.2 Consensus size: 42
16582284 TCTAAACACT
16582294 TTGCTCCTCTAAACAGAGGCACCACGACTTTG-GAAAGTAAA
1 TTGCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAGTAAA
16582335 TTGCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAGTAAA
1 TTGCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAGTAAA
*
16582377 TTGCTCCTCTAAACAGAGGCACCACGACTTT-TGAAAGTAAA
1 TTGCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAGTAAA
16582418 TTGCTCCTCTAAACAGAGGCACCACGACTTTG-GAAAAGTAAA
1 TTGCTCCTCTAAACAGAGGCACCACGACTTTGAG-AAAGTAAA
*
16582460 TTGCTCCTCTAAACAGAGGCACCATGACTTTGAGAAAGTAAA
1 TTGCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAGTAAA
*
16582502 TTGCTTCTCTAAACAGAGGCA--ACGAAACTTTG-GAAAAGTAAA
1 TTGCTCCTCTAAACAGAGGCACCACG--ACTTTGAG-AAAGTAAA
16582544 TTGCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAGTAAA
1 TTGCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAGTAAA
* *
16582586 TTACTCCTCTAAATAGAGGCACCACGACTTTGAGAAAGTAAA
1 TTGCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAGTAAA
16582628 TTGCTCCT
1 TTGCTCCT
16582636 TGACAATCAT
Statistics
Matches: 283, Mismatches: 8, Indels: 19
0.91 0.03 0.06
Matches are distributed among these distances:
40 2 0.01
41 74 0.26
42 202 0.71
43 2 0.01
44 3 0.01
ACGTcount: A:0.35, C:0.23, G:0.18, T:0.23
Consensus pattern (42 bp):
TTGCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAGTAAA
Found at i:16583865 original size:8 final size:7
Alignment explanation
Indices: 16583850--16583915 Score: 64
Period size: 7 Copynumber: 9.3 Consensus size: 7
16583840 AATTTGAATC
16583850 TCTTTTT
1 TCTTTTT
16583857 TCATTTTT
1 TC-TTTTT
16583865 TCATTTTT
1 TC-TTTTT
*
16583873 TCTTCTT
1 TCTTTTT
16583880 TCTTTCTT
1 TCTTT-TT
16583888 T-TTTTT
1 TCTTTTT
16583894 TCTTTTT
1 TCTTTTT
*
16583901 T-TTTTC
1 TCTTTTT
*
16583907 TCATTTT
1 TCTTTTT
16583914 TC
1 TC
16583916 ATCTATTGTT
Statistics
Matches: 50, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
6 8 0.16
7 24 0.48
8 18 0.36
ACGTcount: A:0.05, C:0.17, G:0.00, T:0.79
Consensus pattern (7 bp):
TCTTTTT
Found at i:16583904 original size:10 final size:10
Alignment explanation
Indices: 16583868--16583904 Score: 56
Period size: 10 Copynumber: 3.6 Consensus size: 10
16583858 CATTTTTTCA
16583868 TTTTTTCTTCT
1 TTTTTTCTT-T
*
16583879 TTCTTTCTTT
1 TTTTTTCTTT
16583889 TTTTTTCTTT
1 TTTTTTCTTT
16583899 TTTTTT
1 TTTTTT
16583905 TCTCATTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
10 16 0.67
11 8 0.33
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (10 bp):
TTTTTTCTTT
Found at i:16583914 original size:13 final size:11
Alignment explanation
Indices: 16583868--16583907 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
16583858 CATTTTTTCA
*
16583868 TTTTTTCTTCT
1 TTTTTTCTTTT
*
16583879 TTCTTTC-TTT
1 TTTTTTCTTTT
16583889 TTTTTTCTTTT
1 TTTTTTCTTTT
16583900 TTTTTTCT
1 TTTTTTCT
16583908 CATTTTTCAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
10 8 0.32
11 17 0.68
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (11 bp):
TTTTTTCTTTT
Found at i:16583917 original size:7 final size:8
Alignment explanation
Indices: 16583852--16583914 Score: 50
Period size: 8 Copynumber: 8.6 Consensus size: 8
16583842 TTTGAATCTC
16583852 TTTTTTCA
1 TTTTTTCA
16583860 TTTTTTCA
1 TTTTTTCA
16583868 TTTTTTC-
1 TTTTTTCA
*
16583875 TTCTTTC-
1 TTTTTTCA
16583882 TTTCTTT--
1 TTT-TTTCA
16583889 TTTTTTC-
1 TTTTTTCA
16583896 TTTTTT--
1 TTTTTTCA
*
16583902 TTTTCTCA
1 TTTTTTCA
16583910 TTTTT
1 TTTTT
16583915 CATCTATTGT
Statistics
Matches: 47, Mismatches: 4, Indels: 8
0.80 0.07 0.14
Matches are distributed among these distances:
6 8 0.17
7 17 0.36
8 22 0.47
ACGTcount: A:0.05, C:0.14, G:0.00, T:0.81
Consensus pattern (8 bp):
TTTTTTCA
Found at i:16583994 original size:25 final size:25
Alignment explanation
Indices: 16583960--16584015 Score: 112
Period size: 25 Copynumber: 2.2 Consensus size: 25
16583950 AGAGTAATGT
16583960 AGCATGATTCCATTGCTTCATCATG
1 AGCATGATTCCATTGCTTCATCATG
16583985 AGCATGATTCCATTGCTTCATCATG
1 AGCATGATTCCATTGCTTCATCATG
16584010 AGCATG
1 AGCATG
16584016 CCTTCGCTCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.34
Consensus pattern (25 bp):
AGCATGATTCCATTGCTTCATCATG
Found at i:16587968 original size:60 final size:60
Alignment explanation
Indices: 16587832--16588073 Score: 280
Period size: 60 Copynumber: 4.0 Consensus size: 60
16587822 GTTCTTGTGT
* ** * *
16587832 AGGAAAATTGATACTTTCAACTTTTCCTCAAAAACCCTTTTTATTTTTTAAAAATTTAATTTTTA
1 AGGAAAATTGATACTTTCAACTTTTCCTCAAAAA----TATT-TTTTTGGAAATTTTGATTTTTA
*
16587897 AGGAAAATTGATACTTTCAACTTTTCC-CTAAAAATATTTTTTTGGAAATTTTGATTTTCA
1 AGGAAAATTGATACTTTCAACTTTTCCTC-AAAAATATTTTTTTGGAAATTTTGATTTTTA
***
16587957 AGGAAAATTGATACTTTCAACTTTTCCTCAAAAA-CCCTTTTT-GAAA-TTT-ATTTTTA
1 AGGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGGAAATTTTGATTTTTA
*
16588013 AAGAAAATTGATACTTTCAACTTTTCC-CTAAAAATATTTTTTTTGGAAATTTTGATTTTTA
1 AGGAAAATTGATACTTTCAACTTTTCCTC-AAAAATA-TTTTTTTGGAAATTTTGATTTTTA
16588074 TTTAAAGAAA
Statistics
Matches: 155, Mismatches: 14, Indels: 20
0.82 0.07 0.11
Matches are distributed among these distances:
55 1 0.01
56 37 0.24
57 3 0.02
58 9 0.06
59 9 0.06
60 52 0.34
61 11 0.07
64 1 0.01
65 32 0.21
ACGTcount: A:0.34, C:0.13, G:0.07, T:0.45
Consensus pattern (60 bp):
AGGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGGAAATTTTGATTTTTA
Found at i:16588019 original size:116 final size:120
Alignment explanation
Indices: 16587832--16588071 Score: 380
Period size: 116 Copynumber: 2.0 Consensus size: 120
16587822 GTTCTTGTGT
16587832 AGGAAAATTGATACTTTCAACTTTTCCTCAAAAACCCTTTTTATTTTTTAAAAATTTAATTTTTA
1 AGGAAAATTGATACTTTCAACTTTTCCTCAAAAACCC------TTTTTTAAAAATTTAATTTTTA
*
16587897 AGGAAAATTGATACTTTCAACTTTTCCCTAAAAATA-TTTTTTTGGAAATTTTGATTTTCA
60 AAGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGGAAATTTTGATTTTCA
*
16587957 AGGAAAATTGATACTTTCAACTTTTCCTCAAAAACCC-TTTTT-GAAATTT-ATTTTTAAAGAAA
1 AGGAAAATTGATACTTTCAACTTTTCCTCAAAAACCCTTTTTTAAAAATTTAATTTTTAAAGAAA
16588019 ATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGGAAATTTTGATTTT
66 ATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGGAAATTTTGATTTT
16588072 TATTTAAAGA
Statistics
Matches: 112, Mismatches: 2, Indels: 10
0.90 0.02 0.08
Matches are distributed among these distances:
116 42 0.38
117 28 0.25
118 5 0.04
125 37 0.33
ACGTcount: A:0.34, C:0.13, G:0.07, T:0.45
Consensus pattern (120 bp):
AGGAAAATTGATACTTTCAACTTTTCCTCAAAAACCCTTTTTTAAAAATTTAATTTTTAAAGAAA
ATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGGAAATTTTGATTTTCA
Found at i:16588105 original size:22 final size:22
Alignment explanation
Indices: 16588080--16588121 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
16588070 TTTATTTAAA
16588080 GAAAATAGAATAAA-ATAAAAGT
1 GAAAATA-AATAAAGATAAAAGT
16588102 GAAAATAAATAAAGATAAAA
1 GAAAATAAATAAAGATAAAA
16588122 AATAAAGAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.71, C:0.00, G:0.12, T:0.17
Consensus pattern (22 bp):
GAAAATAAATAAAGATAAAAGT
Found at i:16588123 original size:17 final size:16
Alignment explanation
Indices: 16588103--16588217 Score: 58
Period size: 17 Copynumber: 6.8 Consensus size: 16
16588093 AATAAAAGTG
16588103 AAAATAAATAAAGATAA
1 AAAATAAATAAA-ATAA
*
16588120 AAAATAAAGAAAAGTAA
1 AAAATAAATAAAA-TAA
*
16588137 AACAA-AAATAAAA-AT
1 AA-AATAAATAAAATAA
*
16588152 AAGATAAA-AAATATTAA
1 AAAATAAATAAA-A-TAA
* **
16588169 ATAAATCTAATCTAATAA
1 A-AAAT-AAATAAAATAA
16588187 ATAAATAAAT-AAATAAA
1 A-AAATAAATAAAAT-AA
16588204 ACAAATAAATAAAA
1 A-AAATAAATAAAA
16588218 ATTTTTGGAA
Statistics
Matches: 75, Mismatches: 12, Indels: 21
0.69 0.11 0.19
Matches are distributed among these distances:
14 4 0.05
15 7 0.09
16 4 0.05
17 39 0.52
18 17 0.23
19 3 0.04
20 1 0.01
ACGTcount: A:0.73, C:0.03, G:0.03, T:0.20
Consensus pattern (16 bp):
AAAATAAATAAAATAA
Found at i:16588138 original size:39 final size:39
Alignment explanation
Indices: 16588081--16588164 Score: 100
Period size: 39 Copynumber: 2.2 Consensus size: 39
16588071 TTATTTAAAG
* ** *
16588081 AAAATAGAATAAAATAAAAGTGAAAATAAATA-AAGATAA
1 AAAATAGAAGAAAATAAAA-CAAAAATAAAAATAAGATAA
16588120 AAAATA-AAGAAAAGTAAAACAAAAATAAAAATAAGATAA
1 AAAATAGAAGAAAA-TAAAACAAAAATAAAAATAAGATAA
16588159 AAAATA
1 AAAATA
16588165 TTAAATAAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
38 15 0.38
39 24 0.62
ACGTcount: A:0.75, C:0.01, G:0.08, T:0.15
Consensus pattern (39 bp):
AAAATAGAAGAAAATAAAACAAAAATAAAAATAAGATAA
Found at i:16588161 original size:18 final size:17
Alignment explanation
Indices: 16588103--16588164 Score: 61
Period size: 21 Copynumber: 3.4 Consensus size: 17
16588093 AATAAAAGTG
*
16588103 AAAATAAATAAAGATAA
1 AAAATAAAAAAAGATAA
*
16588120 AAAATAAAGAAAAGTAAAACA
1 AAAATAAA-AAAAG--ATA-A
16588141 AAAATAAAAATAAGATAA
1 AAAATAAAAA-AAGATAA
16588159 AAAATA
1 AAAATA
16588165 TTAAATAAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
17 8 0.22
18 11 0.30
19 2 0.05
20 4 0.11
21 12 0.32
ACGTcount: A:0.77, C:0.02, G:0.06, T:0.15
Consensus pattern (17 bp):
AAAATAAAAAAAGATAA
Found at i:16588189 original size:4 final size:4
Alignment explanation
Indices: 16588182--16588216 Score: 52
Period size: 4 Copynumber: 8.5 Consensus size: 4
16588172 AATCTAATCT
*
16588182 AATA AATA AATA AATA AATAA AACA AATA AATA AA
1 AATA AATA AATA AATA AAT-A AATA AATA AATA AA
16588217 AATTTTTGGA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
4 25 0.89
5 3 0.11
ACGTcount: A:0.77, C:0.03, G:0.00, T:0.20
Consensus pattern (4 bp):
AATA
Found at i:16588211 original size:13 final size:13
Alignment explanation
Indices: 16588182--16588217 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
16588172 AATCTAATCT
*
16588182 AATAAAT-AAATA
1 AATAAATAAAACA
16588194 AATAAATAAAACA
1 AATAAATAAAACA
16588207 AATAAATAAAA
1 AATAAATAAAA
16588218 ATTTTTGGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 7 0.32
13 15 0.68
ACGTcount: A:0.78, C:0.03, G:0.00, T:0.19
Consensus pattern (13 bp):
AATAAATAAAACA
Found at i:16588211 original size:21 final size:21
Alignment explanation
Indices: 16588104--16588216 Score: 70
Period size: 22 Copynumber: 5.1 Consensus size: 21
16588094 ATAAAAGTGA
*
16588104 AAATAAATAAAGATAAA-AAAT
1 AAATAAATAAA-ACAAATAAAT
* *
16588125 AAAGAAAAGTAAAACAAA-AATAA
1 AAA-TAAA-TAAAACAAATAA-AT
16588148 AAATAAGATAAAA-AATATTAAAT
1 AAATAA-ATAAAACAA-A-TAAAT
* ** *
16588171 AAATCTAATCTAATAAATAAAT
1 AAAT-AAATAAAACAAATAAAT
16588193 AAATAAATAAAACAAATAAAT
1 AAATAAATAAAACAAATAAAT
16588214 AAA
1 AAA
16588217 AATTTTTGGA
Statistics
Matches: 71, Mismatches: 12, Indels: 18
0.70 0.12 0.18
Matches are distributed among these distances:
21 21 0.30
22 26 0.37
23 19 0.27
24 5 0.07
ACGTcount: A:0.73, C:0.04, G:0.04, T:0.20
Consensus pattern (21 bp):
AAATAAATAAAACAAATAAAT
Found at i:16589023 original size:18 final size:18
Alignment explanation
Indices: 16589000--16589047 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
16588990 TAAAAAAAAA
* *
16589000 AAATAATAATAATCGGAT
1 AAATAATAAAAATCAGAT
*
16589018 AAATAAAAAAAATCAGAT
1 AAATAATAAAAATCAGAT
16589036 AAATGAATAAAA
1 AAAT-AATAAAA
16589048 TAAATTTAAC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
18 19 0.76
19 6 0.24
ACGTcount: A:0.67, C:0.04, G:0.08, T:0.21
Consensus pattern (18 bp):
AAATAATAAAAATCAGAT
Found at i:16589174 original size:31 final size:31
Alignment explanation
Indices: 16589066--16589177 Score: 84
Period size: 31 Copynumber: 3.5 Consensus size: 31
16589056 ACAGATAATT
* *
16589066 AAAAAAAAATAAATTAAATCCAAAAATATTACC
1 AAAAAAAAATAAATT-AAT-CATAAATATTAAC
*
16589099 AAAAAAAAATTATAATATAATAATAAATATATAAC
1 AAAAAAAAA-TA-AAT-TAATCATAAATAT-TAAC
* * *
16589134 -TATATAAATAAATTACAT-ATAAATATTAAC
1 AAAAAAAAATAAATTA-ATCATAAATATTAAC
*
16589164 AGAAAAAAATAAAT
1 AAAAAAAAATAAAT
16589178 AAAGATATAC
Statistics
Matches: 64, Mismatches: 9, Indels: 14
0.74 0.10 0.16
Matches are distributed among these distances:
30 4 0.06
31 20 0.31
32 5 0.08
33 11 0.17
34 14 0.22
35 9 0.14
36 1 0.02
ACGTcount: A:0.66, C:0.06, G:0.01, T:0.27
Consensus pattern (31 bp):
AAAAAAAAATAAATTAATCATAAATATTAAC
Found at i:16589196 original size:3 final size:3
Alignment explanation
Indices: 16589188--16589229 Score: 52
Period size: 3 Copynumber: 14.0 Consensus size: 3
16589178 AAAGATATAC
16589188 ATA ATA ATA ATA ATA ATA ATAA ATA ATA A-A ATA CATA A-A ATA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA -ATA ATA ATA
16589230 CAAAAGAAGA
Statistics
Matches: 35, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
2 4 0.11
3 25 0.71
4 6 0.17
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:16589255 original size:14 final size:15
Alignment explanation
Indices: 16589231--16589266 Score: 56
Period size: 15 Copynumber: 2.4 Consensus size: 15
16589221 CATAAAATAC
16589231 AAAAGAAGAAAAAA-G
1 AAAA-AAGAAAAAAGG
16589246 AAAAAAGAAAAAAGG
1 AAAAAAGAAAAAAGG
16589261 AAAAAA
1 AAAAAA
16589267 AATGCAAGGT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 9 0.45
15 11 0.55
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (15 bp):
AAAAAAGAAAAAAGG
Found at i:16589256 original size:6 final size:7
Alignment explanation
Indices: 16589231--16589266 Score: 54
Period size: 7 Copynumber: 4.9 Consensus size: 7
16589221 CATAAAATAC
16589231 AAAAGAAG
1 AAAA-AAG
16589239 AAAAAAG
1 AAAAAAG
16589246 AAAAAAG
1 AAAAAAG
16589253 AAAAAAGG
1 AAAAAA-G
16589261 AAAAAA
1 AAAAAA
16589267 AATGCAAGGT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
7 16 0.59
8 11 0.41
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:16590703 original size:26 final size:26
Alignment explanation
Indices: 16590667--16590719 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16590657 GTTGACTTAG
16590667 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16590693 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16590719 G
1 G
16590720 ATCAGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16593315 original size:718 final size:717
Alignment explanation
Indices: 16590693--16593606 Score: 4055
Period size: 718 Copynumber: 4.1 Consensus size: 717
16590683 CCCAGTCTAA
* * *
16590693 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGACCGAGGGTTGCGGCAGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAATCAGACCGAGGGTTGCGGCAGCACATGCTGG
* ** * *
16590757 GCTCGGGCATGTGCTGGTTTCACATTTTTCTTCGCCAGGGCACCATCG-CAGGAGCATCGTAGGA
65 GCTCAGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCA-GAGCATCGTCGGA
* *
16590821 GAACCTGACCGGCGGCATTGGGGTTCCTGTGATCGGGGGGACC-GGGGGTGTGCGCGTATGATGT
129 GAACCTGACCGACGGCATTGGGGTTCC-GTGATCGGGGGG-CCGGGGGGTGTGCGCGCATGATGT
* * * *
16590885 GCGATGGGTGCTTGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAAGTCA
192 GCGATGGGAGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
16590950 CACCCCCTTAAAAAGCATTTGAGCTTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAA
257 CACCCCCTTAAAAAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
16591015 TGGGGACACTTTTTTCGAATGGTCGCAAAATCTTGTACACTTCGAGTTTTTACCTGATTTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTT
* *
16591080 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGGCCAAAAGTCC-TTCTGAA
387 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT-GGGGCCAAAAATCCTTTCTGAA
* * ** * *
16591144 AAAATTTTGAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCGTAAAAAATA-AAGAACAAGTCG
451 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATAAAAAATAGAA-AACGAGTCG
* *
16591208 TCTTGCCATGAAACTTCATGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAAT
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
16591273 GGCATTGGCTTGCAGAACTATGAAGATATGG-CTAAACCCACCTACCACCCTATCGATCCACGGC
580 GGCATTGGCATGCAGAAATATGAAGAT-GGGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * *
16591337 TTGCGCATCCTGTCTCTCTGGCC-GCGTAGTGCCCGCCCGCCC-ACC-A--GCTCGTTTCGTCGG
644 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGACCGCTCGTTTCGTCAG
16591397 TTGGCTTAG
709 TTGGCTTAG
* * *
16591406 GCATACGGAGTTCATTCCTAGTCTAAGATC-AGACCAGACCGAGGGTTACGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-ATCAGACCGAGGGTTGCGGCAGCACATGCTGG
* * * * *
16591470 GCTCAGGCATGTTCTGGTGTCACATTTTTCTTCGTCGAGGAACCATCGCCAGAGCATCGTCGGAG
65 GCTCAGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCAGAGCATCGTCGGAG
* *
16591535 AACCCGACCGACGGCATTGGGGTTCAGGTGATCGGGGGGGCCGGGGGGTGTGCGCGCATGATGTG
130 AACCTGACCGACGGCATTGGGGTTC-CGTGATC-GGGGGGCCGGGGGGTGTGCGCGCATGATGTG
* * * *
16591600 CGATGGGTA-CTTGTACTTGGCCTTTATGTTGGCCCCCTATCCCTCATCAAACCTCGAGAAGTCA
193 CGATGGG-AGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
16591664 CACCCCCTTAAAAAGCATCTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
257 CACCCCCTTAAAAAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * * *
16591729 CGGGGATACTTTTTTCGAATGGTCACAAAATCTTGTCCACTTCGTGTTTTTAGCTGA-TTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTT
* * *
16591793 GTGCATGCCAAAAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAAATCC-ATCCGAAA
387 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCTGAAA
* * *
16591857 AAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTC
452 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATAAAAAATAGAAAACGAGTCGTC
* *
16591922 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCAATGAAAATG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC-ATAAAAATG
* * * *
16591987 GCATTGGAACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACTGCTT
581 GCATTGGCATGCAGAAATATGAAGATGGGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
16592052 GCGCATCTCGTCTCTCTGGCCAGCGTAGTGCCCGCCCGCCCGCCCGACCGCTCGTTTCGTCAGAT
646 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGACCGCTCGTTTCGTCAGTT
*
16592117 GGCTTAT
711 GGCTTAG
* * * *
16592124 GCATACGGAGTTCATTCCCAGTCTAAAATTGAATCGGACCGAGGGTTGCAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
16592189 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCAGAGCATCATCGGAGA
66 CTCAGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCAGAGCATCGTCGGAGA
* ** * * * *
16592254 ACCTGACCGACGGCATTAGGGTTCC--GA-C----GATCGGTGGGTGTGCTCACATGGTGTGCGA
131 ACCTGACCGACGGCATTGGGGTTCCGTGATCGGGGGGCCGGGGGGTGTGCGCGCATGATGTGCGA
* * * *
16592312 TGGGTGTTGGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
196 TGGGAGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* ** *
16592377 CCATTAAGGAGCATTTCAGATTTTACAGGTTTGCTCCCAGTAGCCATTAAAGTGTCTGAAATGGG
261 CCCTTAAAAAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* *
16592442 GATACTTTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGC
326 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGC
* * * * * *
16592507 ATGCAAAAAAAAAGATAAGGATCAGGTCTACCAAGTTTGGGGCCGAAACT-CTTTCTGAAAAAAT
391 ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCTGAAAAAAT
* * *
16592571 TTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
456 TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATAAAAAATAGAAAACGAGTCGTCTTGC
* *
16592636 CATGAAACTTCATGTGAAGGCTTAAGGCACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
521 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
16592701 GGCGTGCAGAAATATGAAGATGGGCCTAAACCCACCTACCACCCTATCGATCCACGGCTCGCGCA
586 GGCATGCAGAAATATGAAGATGGGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
*
16592766 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGACCGCTCGTTTCGTTAGTTGGCTT
651 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGACCGCTCGTTTCGTCAGTTGGCTT
*
16592831 AC
716 AG
** * *
16592833 GCATATAGAGTTCATTCCCAGTGTAAGATCGAATCAGACCGAGGGTTGCGGCAGCACATGCTGGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * * *
16592898 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGCCGAAGA
66 CTCAGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCAGAGCATCGTCGGAGA
* * *
16592963 ACCTGACCGACGGCATTGGGGTTCCGTCGATAGGGGGCCCGGGGGGGTGTGCG-GACATGATATG
131 ACCTGACCGACGGCATTGGGGTTCCGT-GATCGGGGGGCC-GGGGGGTGTGCGCG-CATGATGTG
16593027 CGATGGGAGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
193 CGATGGGAGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
16593092 ACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAATGT-TGCTGAAA
258 ACCCCCTTAAAAAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-CTGAAA
16593156 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTT
* *
16593221 ATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTC-GAAA
387 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCTGAAA
* * * ** * *
16593285 AAATTTCAAAAAATCCCAAAGCGCAAAAAGTTTTGAAAATCGTAAAAAATAGAAAATGAGTCGTC
452 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATAAAAAATAGAAAACGAGTCGTC
**
16593350 TTGCCATGAAACTTCACACGAAGGCTT-AGGAGACCATTGTATGAATTTACAAGCCATAAAAATG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGG-GACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * *
16593414 GCATTGGCATCCAGAAATATAAAGATGTGTCTAAACCCACCTACCACCCTATCGATACACGGCTT
581 GCATTGGCATGCAGAAATATGAAGATGGGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * * ** * * *
16593479 GCGTATCCCGTCTCTCTAGCTGGCATACTGACCGCCCGGTCGCCCGCCCGCTCGTTTCATCGGTT
646 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGACCGCTCGTTTCGTCAGTT
16593544 GGCTTAG
711 GGCTTAG
* * * *
16593551 GCATACGGAGTTCATTCCCAATCTAAAATCGAACCAGACCGAGGGTTGCGGTAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCAGACCGAGGGTTGCGGCAGCA
16593607 GGATCTGTAG
Statistics
Matches: 1954, Mismatches: 215, Indels: 59
0.88 0.10 0.03
Matches are distributed among these distances:
709 460 0.24
710 174 0.09
711 1 0.00
712 128 0.07
713 272 0.14
714 220 0.11
715 4 0.00
716 1 0.00
717 6 0.00
718 682 0.35
719 6 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (717 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCAGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCAGAGCATCGTCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGTGATCGGGGGGCCGGGGGGTGTGCGCGCATGATGTGCGA
TGGGAGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAAAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGC
ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCTGAAAAAAT
TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATAAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGCAGAAATATGAAGATGGGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGACCGCTCGTTTCGTCAGTTGGCTT
AG
Found at i:16593747 original size:26 final size:26
Alignment explanation
Indices: 16593710--16593788 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
16593700 GTTGACTTAG
*
16593710 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16593736 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16593762 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16593788 G
1 G
16593789 ATCGGACTAG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16595540 original size:714 final size:706
Alignment explanation
Indices: 16593762--16595948 Score: 3179
Period size: 714 Copynumber: 3.1 Consensus size: 706
16593752 CCCAGTCTAA
* *
16593762 GCATACGGAGTTCATTCCCTGTCTAAGATCGGACTAGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * * *
16593827 CTCGGGCATGTGCTGGTTTCGCATTTTTCTTTGCCGGGGCACCATCGTCGGGGCATCGTCGAAGA
66 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCG-AGA
*
16593892 ACCTGACCGACGGATTGGGGTTCCTGCGATCGGGGGGATCGGGGGGTGTGCGCGCATGATGTGTG
130 ACCTGACCGACGGATTGGGGTTCC-GCGATCGGGGGG-CCGGGGGGTGTGCGCGCATGATGTGTG
16593957 ATGGGTGCTTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAGTCACAC
193 ATGGGTGCTTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA-TCACAC
* * * * *
16594022 CCCTTTAAAAAGCATCTAAGATTTTATAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATGG
257 CCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
16594087 GGACACTTTTTTTGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGATGTTTTTTGTG
322 GGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAT-TTTTTTGTG
* * *
16594152 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAGAAT
386 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAAAT
* * * *
16594217 TTTGAAAAATCCCT-AACCGTAAAAAGTTTTGAAAATCGTGAAAAATA-AAGAACAAGTCGTCTT
451 TTTAAAAAAT-CCTGAACCGCAAAAAG-TTTCAAAATCGTGAAAAATAGAA-AACGAGTCGTCTT
16594280 GCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
513 GCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
16594345 TTGGCTCGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
578 TTGGCAC-CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
16594410 AATCCCGTCTCTCTGGCCGACGTAGT----GCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAG
642 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* *
16594471 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
** * * * * * *
16594536 CTCAAGAATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGAACCATCGCCAGAGCATTGTCGGAGA
66 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTC-GAGA
* * ** * *
16594601 ACCTGACCGACGGAATTGGGGTTCAGGTGATCAAGGGGCGGGGGAGGTGTGCACGCATGATGTGT
130 ACCTGACCGACGG-ATTGGGGTTC-CGCGATCGGGGGGCCGGGG-GGTGTGCGCGCATGATGTGT
* * *
16594666 GATGGGTACTTGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAATACACA
192 GATGGGTGCTTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAT-CACA
* * *
16594731 CCCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATG
256 CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * *
16594796 GGGATACTTTTTTCGAATGGTCACAAAATCTTGTACACTTTGACTTTTTAATTGATTTTTTTGTG
321 GGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGATTTTTTTGTG
*
16594861 CATGCCAAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAAA
386 CATGCC-AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAAA
*
16594926 TTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
450 TTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
16594991 CATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
515 CATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
16595056 GGCACATAGAAATATGAAGATGTGCC-AAACCCACCTACC-CCACTATCGATCCACGGCTTGTGC
580 GGCAC-CAGAAATATGAAGATGTGCCTAAACCCACCTACCACC-CTATCGATCCACGGCTTGCGC
* *
16595119 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCATTTTGTCGGTTGGCTTAG
643 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * *
16595183 GCATACGGAGTTCATTCTCAGTCTAAGATCGAACCAGACTGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* *
16595248 CTTGGGCATGTGCTGGTGTCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCAGAGA
66 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTC-GAGA
* * *
16595313 ACCTGACCGGCGGCATTGAGGTTCCGACGATCGGGGGTGCCGGGGCGGTTGTGCGCACATGATGT
130 ACCTGACCGACGG-ATTGGGGTTCCG-CGATCGGGGG-GCCGGGG-GG-TGTGCGCGCATGATGT
* * * *
16595378 GCGATGGGTGCTGGTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
190 GTGATGGGTGCTTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA-TCA
* *
16595443 CACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAT
254 CACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
16595508 TAGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTATTTT
319 TGGGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTG-ATT-TTTT
* * *
16595573 T-TGCATGCC-AAAAAATTATAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTCCGAAA
382 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAA
*
16595636 AAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTC
447 AAATTTTAAAAAATCCTGAACCGCAAAAAGTTTC-AAAATCGTGAAAAATAGAAAACGAGTCGTC
* * * *
16595701 TTGCCATGAACCTTCACGTGAAGGCTTAAGGGACCATTGAATGAACTTACAAGCCATAAAAATGG
511 TTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
16595766 CATTGGCATCCAGAAATATGAAGGTGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
576 CATTGGCA-CCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * * *
16595831 CGCTTGCTGTCCCTCTGGCCGACGAAATGCTCGGCTGCCCGCCCGCCCGCTTGTTTCGTCGGTTG
640 CGCATCCCGTCTCTCTGGCCGACGTAGTGC-C--C-GCCCGCCCGCCCGCTCGTTTCGTCGGTTG
16595896 GCTTAG
701 GCTTAG
* * *
16595902 GCATAAGGAGTTCATTCCTAGTCTAAGATCGGATCAGACCGAGGGTT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT
16595949 GTGGTAGCAG
Statistics
Matches: 1319, Mismatches: 132, Indels: 44
0.88 0.09 0.03
Matches are distributed among these distances:
707 2 0.00
708 57 0.04
709 267 0.20
710 284 0.22
711 1 0.00
712 174 0.13
713 92 0.07
714 293 0.22
715 67 0.05
716 8 0.01
718 1 0.00
719 73 0.06
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (706 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGAGAA
CCTGACCGACGGATTGGGGTTCCGCGATCGGGGGGCCGGGGGGTGTGCGCGCATGATGTGTGATG
GGTGCTTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAATCACACCCCC
TTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
ACTTTTTTCGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGATTTTTTTGTGCATGC
CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTAA
AAAATCCTGAACCGCAAAAAGTTTCAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATTAA
ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACC
AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
TCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
Found at i:16597867 original size:26 final size:26
Alignment explanation
Indices: 16597828--16597880 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16597818 GTTGACTTAG
16597828 GCATATGGACTTCATTCCCAGTCTAA
1 GCATATGGACTTCATTCCCAGTCTAA
**
16597854 GCATATGGTGTTCATTCCCAGTCTAA
1 GCATATGGACTTCATTCCCAGTCTAA
16597880 G
1 G
16597881 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATATGGACTTCATTCCCAGTCTAA
Found at i:16598027 original size:899 final size:899
Alignment explanation
Indices: 16595183--16599765 Score: 6207
Period size: 899 Copynumber: 5.1 Consensus size: 899
16595173 GTTGGCTTAG
* * *
16595183 GCATACGGAGTTCATTCTCAGTCTAAGATC-GAACCAGACTGAGGGTTACG-GCAGCACATGCTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTACGAG-AGCACATGCTG
* * * * * ** * * *
16595246 GGCTTGGGCATGTGCTGGTGTCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCAGA
64 GGCTCGGGCATGTGCGGGTGCCGCATTTTTCTTCCTCGGGGCACCATCCCCGGAGCATTGCCGGA
* * * ** * * *
16595311 GAACCTGACCGGCGGCATTGAGGTTCCGACGATCG-GGGGTGCC--GG-GGCGGTTGTGCGCACA
129 GAACCTGACCGGCGGCAATGGGGTTCTGGTGATCGAGGGG-GCCGGGGAGGGGGGTGTGTGCACA
* * *
16595372 TGATGTGCGATGGGTGCTGGTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTTGAG
193 TGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAG
* * *
16595437 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCACTAAAGTGT
257 AACTCACACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * * *
16595502 CTGAATTAGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
322 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCAGAAT
* * *
16595567 TATTTTT-TGCATGCCAA-AAAATTATAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTT
387 T-TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
** ** *
16595630 CCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGA
451 CCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAA
* * * *
16595695 GTCGTCTTGCCATGAACCTTCACGTGAAGGCTTAAGGGACCATTGAATGAACTTACAAGCCATAA
516 GTCGTCTTGCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* *
16595760 AAATGGCATTGGCATC-CAGAAATATGAAGGTGTGCCTAAACCCACCTACCACCCTATCGATCCA
581 AAATGGCATTGGCA-CACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * * * * * * *
16595824 CGGCTTGCGCTTGCTGTCCCTCTGGCCGACGAAATGCTCGGCTGCCCGCCCGCCCGCTTGTTTCG
645 CGGCTTGTGCATCCCGTCTCTCTAGCCG--G-CA---T-AG-TGCCCGCCCGCCCACTCGTTTCG
* * * * * * * * * *
16595889 TCGGTTGGCTTAGGCATAAGGAGTTCATTCCTAGTCTAAGATCGGATCAGACCGAGGGTTGTGGT
702 TCGGTTGCCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGATCGAGGGTTATGGC
* * * * * * * * * *
16595954 AGCAGGATCAGCAACACGTAGAAGGGGACTC-GATCGATCCCCGCCTTGCGCATCCCGCCCCTCT
767 AGCAGGATCGGTAGCATGCAGAGGGGGACCCAG-TCAATCCCTGGCTTGCGCATCCCGCCCCTCT
* * * * * *
16596018 GGCCGGCTGAGCGCCCGCAAGCTCTTTTCGTGGGTTGATTTAGGCATACGGAGTTCATTCCTAGT
831 GGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGACTTCATTCCCAGT
16596083 CT--
896 CTAA
* * *
16596085 ---T----AG---ATT----G-----GAT-----CGGACCGAGGGTTGCGGGAGCACATTCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGAGAGCACATGCTGGG
* * * * * * * *
16596126 CTCCGGCATGTGCTGGAGCCGTATTTTTCTTCGTCGGGACACCATCGCCGGAGCA-TCCTCGGAC
66 CTCGGGCATGTGCGGGTGCCGCATTTTTCTTCCTCGGGGCACCATCCCCGGAGCATTGC-CGGA-
* * * * * *
16596190 AAACCTGACCGGCGGCAATGGGGTTCTGATGATCGAGGGGGCC----AGGCGGGTCT-AGCAGAT
129 GAACCTGACCGGCGGCAATGGGGTTCTGGTGATCGAGGGGGCCGGGGAGGGGGGTGTGTGCACAT
* * **
16596250 GATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTTAGA
194 GATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGA
* * *
16596315 CCTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTC
258 ACTCACACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* *
16596380 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTAGCTGAATT
323 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCAGAATT
*
16596445 TTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
388 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
*
16596510 GAAAAAATTTT-AAAAATCCCAAACCAC-AAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGT
453 GAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGT
16596573 CGTCTTGCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
518 CGTCTTGCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
*
16596638 ATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
583 ATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
*
16596703 CTTGTGCATCCTGTCTCTCTAGCCGGCATAGTGCCCGCCCGCCCACTCGTTTCGTCGGTTGCCTT
648 CTTGTGCATCCCGTCTCTCTAGCCGGCATAGTGCCCGCCCGCCCACTCGTTTCGTCGGTTGCCTT
* * *
16596768 AGGCATACGTAGTTCATTCCCAATCTAAGATCAGACTGGATCGAGGGTTGTGGCAGCAGGATCGG
713 AGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGATCGAGGGTTATGGCAGCAGGATCGG
* * *
16596833 TAGCATGCAGAGGGAGACCCAGTCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGC
778 TAGCATGCAGAGGGGGACCCAGTCAATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
*
16596898 ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGACTTCATTCCCAGTCTAA
843 ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGACTTCATTCCCAGTCTAA
* * * *
16596955 GCATACGGTGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGATTACGAGAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGAGAGCACATGCTGGG
* *
16597020 CTCAGGCATGTGCGGGTGCCGCATTTTTCTTCATCGGGGCACCATCCCCGGAGCATTGCCGGAGA
66 CTCGGGCATGTGCGGGTGCCGCATTTTTCTTCCTCGGGGCACCATCCCCGGAGCATTGCCGGAGA
* *
16597085 ACCTGACCGGCGGCATTGGGGTTCTGGTGATCGGGGGGGCCGGGGAGGGGGGTGTGTGCACATGA
131 ACCTGACCGGCGGCAATGGGGTTCTGGTGATCGAGGGGGCCGGGGAGGGGGGTGTGTGCACATGA
*
16597150 TGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCTATCCCTCATCAAACCTCGAGAACT
196 TGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACT
* *
16597215 CACACCCCTTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGA
261 CACACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
16597280 AATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGCTTTTAGCAGAATTTTT
326 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCAGAATTTTT
*
16597345 TTGTGCATGCCAACCAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
391 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
16597410 AAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGT
456 AAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGT
16597475 CTTGCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
521 CTTGCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
16597540 GCATTGGCACACAAAAATATGAAGATATGCCTAAACCCACCTACCACCCTGTCGATCCACGGCTT
586 GCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
16597605 GTGCATCCTGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCACTCGTTTCGTCGGTTGCCTTAGG
651 GTGCATCCCGTCTCTCTAGCCGGCATAGTGCCCGCCCGCCCACTCGTTTCGTCGGTTGCCTTAGG
* * *
16597670 CATACGTAGTTCATTCCCAATCTAAGATCAGACTGGATCGAGGGTTGTGGCAGCAGGATCGGTAG
716 CATACGGAGTTCATTCCCAATCTAAGATCAGACCGGATCGAGGGTTATGGCAGCAGGATCGGTAG
*
16597735 CATGCAGAGGGGGACCCAGTCAATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCAAC
781 CATGCAGAGGGGGACCCAGTCAATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACC
*
16597800 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGACTTCATTCCCAGTCTAA
846 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGACTTCATTCCCAGTCTAA
* * * *
16597854 GCATATGGTGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGAGAGCACATGCTGGG
* *
16597919 CTCGGGCATGTGCGGGTACCGCATTTTTCTTCACT-GGGGCACCATCCCCGGAGCATTGTCGGAG
66 CTCGGGCATGTGCGGGTGCCGCATTTTTCTTC-CTCGGGGCACCATCCCCGGAGCATTGCCGGAG
* *
16597983 AACCTGACAGGCGGCATTGGGGTTCTGGTGATCG-GAGGGGCCGGGGAGGGGGGTGTGTGCACAT
130 AACCTGACCGGCGGCAATGGGGTTCTGGTGATCGAG-GGGGCCGGGGAGGGGGGTGTGTGCACAT
*
16598047 GATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCTATCCCTCATCAAA-CTCGAGAA
194 GATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAA
* *
16598111 CTCACACCCCTTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTT
259 CTCACACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
*
16598176 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCAGAATTG
324 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCAGAATTT
16598241 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
389 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
16598306 AAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTC
454 AAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTC
*
16598371 GTCTTGCCATGAAACTTCAAGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
519 GTCTTGCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
16598436 TGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTGTCGATCCACGGC
584 TGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * *
16598501 TTGTGCATCCCGTCTCTCTGGCCAGCGTAGCGCCCGCCCGCCCGCCCACTCGTTTCGTCGGTTGC
649 TTGTGCATCCCGTCTCTCTAGCCGGCATA--G--TGCCCGCCCGCCCACTCGTTTCGTCGGTTGC
* *
16598566 CTTAGGCATACGGAGTTCATTCCTAATCTAAGATCAGACCGGAT-TACGGGTTATGGCAGCAGGA
710 CTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGATCGA-GGGTTATGGCAGCAGGA
* * * * *
16598630 TCGGCAGCATGTAGAGGGGGACCCAGTCAATCCCTGGCTTGCGCAGCCTGCCCCTCTGGCTGGCT
774 TCGGTAGCATGCAGAGGGGGACCCAGTCAATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
*
16598695 GAGCACCCGCACGCTCG-TTCTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
839 GAGCACCCGCACGCTCGTTTC-GTGGGTTGACTTAGGCATACGGACTTCATTCCCAGTCTAA
* * * *
16598756 GCATATGGAGTTCTTTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGAGAGCACATGCTGGG
** * *
16598821 CTCGGGCATGTGCGGGTGCCATATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATTGCCGGAGA
66 CTCGGGCATGTGCGGGTGCCGCATTTTTCTTCCTCGGGGCACCATCCCCGGAGCATTGCCGGAGA
* * * * * *
16598886 ACCTGACCGACGACAATGGGGTTCCGGTGGTCGAGGGGGCCGGGGAAGGGGGTGTGCGCACATGA
131 ACCTGACCGGCGGCAATGGGGTTCTGGTGATCGAGGGGGCCGGGGAGGGGGGTGTGTGCACATGA
** *
16598951 TGTGTGATGGGTGCTGGCGCTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTTGAGAACT
196 TGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACT
* * * *
16599016 GACACCCCCTTAAAGAGTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGCGTCTGA
261 CACACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * * *
16599081 AATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTCTTAG-ATGACTTTT
326 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCA-GAATTTT
*
16599145 TTTGTGCATGCCAA-AATAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTG
390 TTTGTGCATGCCAACAA-AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* * * ** *
16599209 AAAAAAGTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGACAAATAGAAAATGAGTT
454 AAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTC
* **
16599274 GTCTTGCCATAAAACTTCACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
519 GTCTTGCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * * *
16599339 TGGCACTGGCACGCAAAAATGTGAAGATGTGCCTAAGCCCACCTACCACCCTATCGGTCCACGGC
584 TGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* *** * ** * * * *
16599404 TTGCGCATCCCGTCTCTCTAGCCGATGTGGTGCCCGCCCGCCCGTTCATTTTGTCAGTTGGCTTA
649 TTGTGCATCCCGTCTCTCTAGCCGGCATAGTGCCCGCCCGCCCACTCGTTTCGTCGGTTGCCTTA
* * * * *
16599469 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGA-GGTTACGGCAGCAGGATTGAT
714 GGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGATCGAGGGTTATGGCAGCAGGATCGGT
*** *** * * * * **
16599533 AGCACATAGAGGGGGACTTGGTCGAT-CATCGGCCTTGCGCATCCCACCCCTCTGACCGATTGAG
779 AGCATGCAGAGGGGGACCCAGTCAATCCCT-GG-CTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * * * *
16599597 CGCCCGCACAC-CGTTTCGTGGGTTAACTTAGGCATACAGAGTTCATTCCCACTCTAA
842 CACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGACTTCATTCCCAGTCTAA
* * * * * * * * * *
16599654 GCATAGGGAGTTCATTTCCAATCTAAGATCAGACCGAACCAATGGTTGCAAGAGCATATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGAGAGCACATGCTGGG
* *
16599719 TTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCGT-GGGGCACCATC
66 CTCGGGCATGTGCGGGTGCCGCATTTTTCTTC-C-TCGGGGCACCATC
16599766 GTCGGAGAAC
Statistics
Matches: 3344, Mismatches: 275, Indels: 127
0.89 0.07 0.03
Matches are distributed among these distances:
868 186 0.06
869 2 0.00
870 1 0.00
873 2 0.00
874 1 0.00
875 1 0.00
876 181 0.05
877 213 0.06
878 140 0.04
879 34 0.01
880 7 0.00
883 3 0.00
884 1 0.00
888 1 0.00
889 3 0.00
892 3 0.00
893 39 0.01
894 78 0.02
895 4 0.00
897 228 0.07
898 632 0.19
899 759 0.23
900 4 0.00
901 6 0.00
902 428 0.13
903 387 0.12
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGAGAGCACATGCTGGG
CTCGGGCATGTGCGGGTGCCGCATTTTTCTTCCTCGGGGCACCATCCCCGGAGCATTGCCGGAGA
ACCTGACCGGCGGCAATGGGGTTCTGGTGATCGAGGGGGCCGGGGAGGGGGGTGTGTGCACATGA
TGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACT
CACACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCAGAATTTTT
TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
AAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGT
CTTGCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
GCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
GTGCATCCCGTCTCTCTAGCCGGCATAGTGCCCGCCCGCCCACTCGTTTCGTCGGTTGCCTTAGG
CATACGGAGTTCATTCCCAATCTAAGATCAGACCGGATCGAGGGTTATGGCAGCAGGATCGGTAG
CATGCAGAGGGGGACCCAGTCAATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACC
CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGACTTCATTCCCAGTCTAA
Done.