Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 89 of 195
Found at i:16598759 original size:26 final size:26
Alignment explanation
Indices: 16598730--16598782 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16598720 GTTGACTTAG
16598730 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
16598756 GCATATGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16598782 G
1 G
16598783 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16600459 original size:25 final size:26
Alignment explanation
Indices: 16600425--16600476 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16600415 GTTGACTTAG
16600425 GCATACGGAGTT-ATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
16600450 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
16600476 G
1 G
16600477 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 11 0.46
26 13 0.54
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:16602207 original size:26 final size:26
Alignment explanation
Indices: 16602178--16602253 Score: 125
Period size: 26 Copynumber: 2.9 Consensus size: 26
16602168 GTTAACTTAG
* * *
16602178 GCATACGTAGTTAATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16602204 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16602230 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
16602254 TAGATCGGAC
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16603145 original size:26 final size:26
Alignment explanation
Indices: 16603109--16603158 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
16603099 TTGACTTAGG
16603109 CATACGGAGTTCACACCCAGTCTAAT
1 CATACGGAGTTCACACCCAGTCTAAT
* **
16603135 CATATGGAGTTCATTCCCAGTCTA
1 CATACGGAGTTCACACCCAGTCTA
16603159 TGATCAGACC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (26 bp):
CATACGGAGTTCACACCCAGTCTAAT
Found at i:16603489 original size:902 final size:890
Alignment explanation
Indices: 16601320--16606354 Score: 6197
Period size: 891 Copynumber: 5.6 Consensus size: 890
16601310 TAGGCATACA
* * *
16601320 GAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGCAGCACTTGCTGGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGATTGAGGG-TGCGGCAGCACATGCTGGGCTCGGGC
* * * **
16601385 ATGTGCTGCTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGAC
65 ATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGAC
* * * * *
16601450 TGACGGAATTGGGGTTCCGACGATCGGGGGTGCCGAGGGGG-CGTGCGCACATGATGTGAGATGG
130 CGACGGCATTGGGGTTCCGACGATCGGGGG-GCCGGGGGGGTTGTGCGCACATGATGTGCGATGG
* * *
16601514 GTGCTGGTACTTGGCCCCTACATTGGCCCCCTCTCCCTCATCAAACCTCGAGAACTCACACCCCC
194 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * * *
16601579 TTAAAGAGTATTCGAGATTTTACAGGTTTGCTGACAATAGCCATTAAAGTGTCTGAAATGGGGAC
259 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* *
16601644 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTCTTAGCTGAATTTTTTTGTGCATG
324 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
** * *
16601709 CCAACGAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCGTCCAAAAAAATTTTA
389 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTA
* ** * * * *
16601774 AAAAATCCCGGGCCGTAAAAAGCTTCAAAAATTATGAAAAATAGAAAACAAGTCATCTTGCCATG
454 AAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
* * *
16601839 GAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATAAAAATGGAATTGGCA
519 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * *
16601904 TGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAACGATCCACGGCTTACGCATCCC
584 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCC
* * * * *
16601969 GTCTCTCTGGCCGGTGTAGTGCCCG-CCGCTCATTTCGTCGGTTGCCTTAGGCATACAGAGTTCA
649 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCA
* * * * ** * * ** *
16602033 TTCCTAGTCTAAGATCGGATCGGACCGATGGTTGCGGTAGTAGGATCGACAGCACGTAGAGGGGG
714 TTCCCAGTCTAAGATTGGA-CGGACTGAGGGTTGCGACAGCAGGATCGACAGTACACAGAAGGGG
* * * * * * * * * *
16602098 ACCCGGTCGATCCCTGGCTTGTGCATCCTGCCTCTCTAGCCGGCTGAGAGCCCGTACGCTCGTTT
778 ACCCAGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
16602163 CGTGGGTTAACTTAGGCATACGTAGTTAATTTCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
843 CGTGGG-----TT--G---AC---------TT--AG-----GCATACGGAGTTCATTCCCAGTCT
*
16602228 AAGCATACG
882 AAGCATATG
* * *
16602237 GAGTTCATTCCCAGTCTTAGATCGGACCGGATTGAGGGTCGCGACAGCACATTCTGGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGATTGAGGGT-GCGGCAGCACATGCTGGGCTCGGGC
* * * * * * *
16602302 ATGTGCTGGTGTCGCATTTTTCTTCGTCAGGGCACAATTGCTGGAGAATCG-CTGGGGAACTTGA
65 ATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCGCCGGAGCATCGTC-GGAGAACCTGA
* * * * *
16602366 CCGACGGCATTGGGGTTCCGACAATTGGGGGTGCCGGGGGGGGTGTGCGCACATTATGTTCGATG
129 CCGACGGCATTGGGGTTCCGACGATCGGGGG-GCCGGGGGGGTTGTGCGCACATGATGTGCGATG
16602431 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
193 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * *
16602496 CTTAAAGAGCTTTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTTAAATGGGGA
258 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
*
16602561 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTTAGCTGAATTTTTTTGTGCAT
323 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * *
16602626 GCC-AAAAAAATAGAAGGATCACGTCTACAAAGTTTGGGG-CAAAACTCCTTTCGAAAAAATTTT
388 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTT
** * * *
16602689 AAAAAATCTCGAATTGTAAAAAGGTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCAA
453 AAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* * *
16602754 GAAACTTCACGTGAAGGCTGAAGGGACCATTGCATGAATTTACAAGCCATAAAAAATGGCATTGT
518 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAAATGGCATTGG
* *
16602819 CATGCAGAAATATGAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACGACTTGTGCATC
582 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATC
* ** * * * *
16602884 CTGTCTCTCTGGCCGATGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTGTCGTCAGTTGTCTTAG
647 CCGTCTCTCTGGCCGGCGTAGT------------GCCCGCCCGCTCGTTTCATCGGTTGGCTTAG
* *
16602949 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACTGAGGGTTGCGACAGTAGGATCGACA
700 GCATACGGAGTTCATTCCCAGTCTAAGATTGGA-CGGACTGAGGGTTGCGACAGCAGGATCGACA
* *
16603014 GTACGCA-ACAGGGGACCCAGCCGATCCCCGACTTGCGCATCCCGCCCCTTTGGCCGGCTGAGCG
764 GTACACAGA-AGGGGACCCAGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * ** *
16603078 CCCGCACGCTCGTTACGTGGTTTGACTTAGGCATACGGAGTTCACACCCAGTCTAATCATATG
828 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATG
* * * *
16603141 GAGTTCATTCCCAGTCTATGATCAGACCGGATTGATGGGTGTGGCAGCACATGCTAGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGATTGA-GGGTGCGGCAGCACATGCTGGGCTCGGGC
* * * *
16603206 ATGTGCTGGTGTCACATTTTTCTTCGTCAGGGCACCATCACCGGAGTATCGTCGGAGAACCTGAC
65 ATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGAC
* * ** * * *
16603271 GGGCGGCATTGGGGTTTTGGCGATTGGGGGGCCGGGGGGGTTGTGCGCACATGATGTGTGATGGG
130 CGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTTGTGCGCACATGATGTGCGATGGG
*
16603336 TGCTGGTACTTTGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
195 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * *
16603400 TAAAGAGCATTTGAGATTTTATAGGTTTGTTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACA
260 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * * *
16603465 CTTTTTTCAAACGGTCAGAAAATCTTGTACACTTTGAGTTTTTA-CTTGAATTTTTTTATGCATG
325 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC-TGAATTTTTTTGTGCATG
* * *
16603529 CCAAAAAAAATAAAAGGATCACATCTATCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTA
389 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTA
** * *
16603594 AAAAATC-CTGAACCGTAAAATA-TTTTTAAAATCATGAAAAATAAAAAATGAGTCGTCTTGCCA
454 AAAAATCTC-GAACCGTAAAA-AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
*
16603657 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAACTTACAAGCCATAAAAATGGCATTGG
517 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * * * *
16603722 CATGTAGAAATATGAAGATTTGCCTAAACCCAACTACCACCCTATTGATCCACGGCTTGCGCAAC
582 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATC
* * *
16603787 CCGTCTCTTTGGCCGGCGTAGTGCCTGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGAAGTT
647 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTT
** ** * * * * ** * *
16603852 TTTTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCAGGATCAACAACATACAGAGGG
712 CATTCCCAGTCTAAGATTGGAC-GGACTGAGGGTTGCGACAGCAGGATCGACAGTACACAGAAGG
* * * * * *
16603917 GGACCCGGCCGATCGCCCG-CTTGTGCATCCCACCCCTCTGGCCGGTTGAGTGCCCGCACGCTTG
776 GGACCCAGCCGATC-CCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
*
16603981 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
840 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATG
* * * * * *
16604032 GAGTTCATTCCCAGCCTAAGATCGGACTGGATCGAGGGTTGCGACAGCACATGCTAGGCTTGGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGATTGAGGG-TGCGGCAGCACATGCTGGGCTCGGGC
* * * *
16604097 ATGTGCTCGTGCCGCATTTTTCTTCATC-GAGGTACCATCGTCGGAGCATCGTCGGAGAACCTGA
65 ATGTGCTGGTGCCGCATTTTTCTTCGTCAG-GGCACCATCGCCGGAGCATCGTCGGAGAACCTGA
* ** * *
16604161 CCGACGGCATTAGGGTTCCGGTGATCAGGGGGCC-GGGGGGTTGTGCGCACATGATATGCGATGG
129 CCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTTGTGCGCACATGATGTGCGATGG
* *
16604225 GTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTCGAGAACTCACACCCCC
194 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * * *
16604290 TAAAAGAGCATTTGAGATTTTACAGGTTTG-TTCCAGTAGCCATTAAACTGTCTGGAATGGGGAC
259 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * *
16604354 ACCTTTTTCAAATGGTCACAAAATCTGGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATG
324 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
*
16604419 CCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTA
389 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTA
* * *
16604484 AAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGGGTCGTCTTGCCATG
454 AAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
16604549 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATTAAAATGGCATTGGCA
519 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
** *
16604614 CACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATAGATCCACGACTTGCGCATCCC
584 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCC
16604679 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTTGCTCGTTTCATCGGTTGGCTTAGGC
649 GTCTCTCTGGCCGGCGTAGT--------GCCCG-CC-C--GCTCGTTTCATCGGTTGGCTTAGGC
* * * * **
16604744 ATACAGAGTTCATTCCTAGTCTAAGATTGGACCGGA-TCGAGGGTTGC-AGTAGAAGGATCGGTA
702 ATACGGAGTTCATTCCCAGTCTAAGATTGGA-CGGACT-GAGGGTTGCGA-CAGCAGGATCGACA
* * * * *
16604807 GCACATAGAGGGGGACCCAGTCGATCCCC-AGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCG
764 GTACACAGAAGGGGACCCAGCCGATCCCCGA-CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * *
16604871 CCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCC-G-GT---C-TA--
828 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATG
* *
16604926 -AG---A-T--C-G-----GATTGGA-C----TGAGGGTTGCGGTAGCACATGCTGGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGATTGAGGG-TGCGGCAGCACATGCTGGGCTCGGGC
** * * * * * *
16604973 ATGCACCGGTGTCGCATTTTTCTTC-ACCGAGGCACCATCACTGGAGCATCGTCGGAGAACCTGA
65 ATGTGCTGGTGCCGCATTTTTCTTCGTCAG-GGCACCATCGCCGGAGCATCGTCGGAGAACCTGA
* * * * * *
16605037 CCTACGGCATTCGGGTTTCGACGATCGGGTGTGCCGGAGGGG-TGTGTGCACATGATGTGCGATG
129 CCGACGGCATTGGGGTTCCGACGATCGGG-GGGCCGGGGGGGTTGTGCGCACATGATGTGCGATG
* * *
16605101 GGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTAGGGAACTCACACCCC
193 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
*
16605166 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGA
258 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
16605231 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
323 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* *
16605296 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAAA-TT
388 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-CAAAAAAATTT
*
16605360 TAAAAAATCT-GAACCGAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
452 TAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
*
16605424 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAGAATGGCATTGG
517 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
** * * *
16605489 CACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA-TAGCTTGCGCTT
582 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGA-CTTGCGCAT
* *
16605553 CCCGTCTCTCTGGTCGGCGTAGTGCCCGTCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGT
646 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGT
* * * * * *
16605618 TCATTCCCAGTCTAAGATTAGACTGGATTGAGGGTTGC-AGCAACAGGATTGGCACCT-CACAGA
711 TCATTCCCAGTCTAAGATTGGAC-GGACTGAGGGTTGCGA-CAGCAGGATCGACA-GTACACAGA
* * * * * * * *
16605681 GGGGGACCC-GACCAATCCCTGGCTTTCGCATCCTGCCCCTTTGGCCAGCTGAGCGCCCGCACGC
773 AGGGGACCCAG-CCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
*
16605745 TCGTTTCGTGGGTTGACTTAGGCATAAGGAGTTCATTCCCAGTCTAAGCATATG
837 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATG
** *** ** *
16605799 GAGTTCATTCCCAGTCTAAGATCGGACCAAACCAAGGGTTATGGCAGCACATGCTGGGCTTGGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGATTGAGGG-TGCGGCAGCACATGCTGGGCTCGGGC
* * * * * *
16605864 ATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCAGAGAACCTAAC
65 ATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGAC
* * * ** * *
16605929 CGGCGGCATTGGGGGTCTGGTGAT-TGGGGGCC--GGGGGTTGTGCTCACATGATGTGCGATGGG
130 CGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTTGTGCGCACATGATGTGCGATGGG
* *
16605991 TGTTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
195 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* *
16606056 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATAGGGACA
260 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* *
16606121 CTTTTCTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAA--TTTTTGTGCATGC
325 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
**
16606184 CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAA
390 CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAA
* * ** * *
16606249 AAAATCCCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAG-AAACGAGTCGTCTTGCCATGC
455 AAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * *
16606313 AACATCACGTGAAGGCTTAAGGGATCGTTGTATGAATTTACA
520 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
16606355 TCATATNNNN
Statistics
Matches: 3601, Mismatches: 425, Indels: 215
0.85 0.10 0.05
Matches are distributed among these distances:
864 2 0.00
865 170 0.05
866 2 0.00
867 2 0.00
868 1 0.00
869 5 0.00
870 1 0.00
871 2 0.00
874 2 0.00
875 1 0.00
876 104 0.03
877 309 0.09
878 160 0.04
879 7 0.00
880 1 0.00
881 7 0.00
885 6 0.00
886 140 0.04
887 36 0.01
888 193 0.05
889 6 0.00
890 400 0.11
891 473 0.13
892 7 0.00
893 2 0.00
896 2 0.00
897 1 0.00
898 4 0.00
899 2 0.00
900 2 0.00
901 5 0.00
902 324 0.09
903 177 0.05
904 282 0.08
905 6 0.00
909 2 0.00
911 2 0.00
916 125 0.03
917 267 0.07
918 205 0.06
920 2 0.00
923 1 0.00
925 2 0.00
929 6 0.00
930 145 0.04
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (890 bp):
GAGTTCATTCCCAGTCTAAGATCGGACCGGATTGAGGGTGCGGCAGCACATGCTGGGCTCGGGCA
TGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACC
GACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTTGTGCGCACATGATGTGCGATGGGT
GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAA
AAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGT
CTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATT
CCCAGTCTAAGATTGGACGGACTGAGGGTTGCGACAGCAGGATCGACAGTACACAGAAGGGGACC
CAGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT
GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATG
Found at i:16604035 original size:26 final size:26
Alignment explanation
Indices: 16603999--16604051 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16603989 GTTGACTTAG
*
16603999 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
16604025 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
16604051 G
1 G
16604052 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:16605378 original size:25 final size:26
Alignment explanation
Indices: 16605350--16605398 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
16605340 AAATCCTTCT
16605350 GAAAAAAATTTAAAAAATC-TGAACC
1 GAAAAAAATTTAAAAAATCATGAACC
* *
16605375 GAAAAAAGTTTCAAAAATCATGAA
1 GAAAAAAATTTAAAAAATCATGAA
16605399 AAATAGAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 17 0.81
26 4 0.19
ACGTcount: A:0.59, C:0.10, G:0.10, T:0.20
Consensus pattern (26 bp):
GAAAAAAATTTAAAAAATCATGAACC
Found at i:16605802 original size:26 final size:26
Alignment explanation
Indices: 16605766--16605818 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16605756 GTTGACTTAG
16605766 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
*
16605792 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
16605818 G
1 G
16605819 ATCGGACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:16607474 original size:18 final size:19
Alignment explanation
Indices: 16607451--16607499 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
16607441 CTAAAAAAAA
* *
16607451 AAAT-AATAATAATCGGAT
1 AAATAAATAAAAATCAGAT
*
16607469 AAATAAAAAAAAATCAGAT
1 AAATAAATAAAAATCAGAT
*
16607488 AAATGAATAAAA
1 AAATAAATAAAA
16607500 TAAATTTAAC
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
18 4 0.16
19 21 0.84
ACGTcount: A:0.67, C:0.04, G:0.08, T:0.20
Consensus pattern (19 bp):
AAATAAATAAAAATCAGAT
Found at i:16607648 original size:3 final size:3
Alignment explanation
Indices: 16607640--16607681 Score: 52
Period size: 3 Copynumber: 14.0 Consensus size: 3
16607630 AAAGATATAC
16607640 ATA ATA ATA ATA ATA ATA ATAA ATA ATA A-A ATA CATA A-A ATA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA -ATA ATA ATA
16607682 CAAAAGAAGA
Statistics
Matches: 35, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
2 4 0.11
3 25 0.71
4 6 0.17
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:16607701 original size:15 final size:15
Alignment explanation
Indices: 16607690--16607718 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
16607680 TACAAAAGAA
16607690 GAAAAAAGAAAAAAG
1 GAAAAAAGAAAAAAG
16607705 GAAAAAAGAAAAAA
1 GAAAAAAGAAAAAA
16607719 AATGCAATGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (15 bp):
GAAAAAAGAAAAAAG
Found at i:16607719 original size:8 final size:7
Alignment explanation
Indices: 16607683--16607718 Score: 54
Period size: 7 Copynumber: 4.9 Consensus size: 7
16607673 CATAAAATAC
16607683 AAAAGAAG
1 AAAA-AAG
16607691 AAAAAAG
1 AAAAAAG
16607698 AAAAAAGG
1 AAAAAA-G
16607706 AAAAAAG
1 AAAAAAG
16607713 AAAAAA
1 AAAAAA
16607719 AATGCAATGG
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
7 16 0.59
8 11 0.41
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:16611418 original size:725 final size:705
Alignment explanation
Indices: 16609145--16612082 Score: 3252
Period size: 725 Copynumber: 4.1 Consensus size: 705
16609135 CCCAGTCTAA
* * * *
16609145 GCATATGGAGTTCATTTCCCAGTCTAAGATCAGACT-GGACCGAGGGTTGC-GCAGCACATGCTA
1 GCATATAGAGTTCA-TTCCCAGTCTAAGATC-GAATCAGACCGAGGGTTGCGGCAGCACATGCTG
* ** * *
16609208 GGCTCGGGGCATGTGCTGGTTTCACATTTTTCTTCGCCAGGGCACCATCG-CAGGAGCATCGTAG
64 GGCTC-AGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCA-GAGCATCGTCG
* * **
16609272 GAGAACCTGACCGGCGGCATTGGGGTTCCTGTGATCGGGGGACCGGGGGGTTGTGCGCGTATGAT
127 GAGAACCTGACCGACGGCATTGGGGTTCC---GA-C----GATCGGGGGGTTGTGCGCACATGAT
* * *
16609337 GTGCGATGGGTGCTTGTACTTGGCCCTTATATTGGGCCCCCTATCCCTTATCAAACCTCGAGAAG
184 GTGCGATGGGTGCTGGTACTTGGCCCTTATATT-GGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
16609402 TCACACCCCCTTAAAAAGCATTTGAGCTTTTACAGGTTTGCTG-CAGTAG-CATTAAAGTGTCTG
248 TCACACCCCCTTAAAAAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * *
16609465 AAATGGGGACACTTTTTTCGAATGGTCGCAAATCTTGTACAC-TCGAGTTTTTACCTGATTTTTT
313 AAATGGGGACACTTTTTTCAAATGGTCACAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTT
* * *
16609529 TTGTGCATTGCCAACAAAATAC-AGGATCACGTCTACCAAGTTTGGGGGCCAAAAGTCCTTCCTG
378 TTGTGCA-TGCAAAAAAAATACAAGGATCACGTCTACCAAGTTT-GGGGCCAAAAATCCTT--T-
* * * ** * *
16609593 GAAAAATTTTTGAAAAATCTCCGAACCGCAAAAAAGTTTTGAAAATCGTAAAAAATA-AAGAACA
438 GAAAAAATTTTAAAAAATC-CTGAACCGC-AAAAAGTTTCAAAAATCATAAAAAATAGAA-AACG
*
16609657 AGTCGTCTTGCCATG-AACTTCATGTGGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCAT
500 AGTCGTCTTGCCATGAAACTTCATGTTGAAGGCTT-AAGGACCATTGTATGAATTTACAAGCCAT
* * *
16609721 AAAAATGGCATTGG-CTGCCAGGAACTATGAAAGATATGGCCTAAACCCACCTACCACCCTATCG
564 AAAAATGGCATTGGAATG-CA-GAAATATG-AAGAT-GGGCCTAAACCCACCTACCACCCTATCG
*
16609785 AT-CACGGCTTGCGCATCCTGTCTCTCTGGCC-GCGTAGTGCCCGCCAGCCCGCCGCCCCACCAG
625 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCC-GCCCGCCG----ACC-G
* *
16609848 CCTCGTTTCGTCGGTGTGGCTTAG
684 -CTCGTTTCGTCAGT-TGGCTTAC
* * *
16609872 GCA-ATACGGAGTTCA-TCCTAGTCT-AGATC-AGACCAGACCGATGGGTTACGGCAGCACATGC
1 GCATATA--GAGTTCATTCCCAGTCTAAGATCGA-ATCAGACCGA-GGGTTGCGGCAGCACATGC
* * * * *
16609933 TGGGCTCAGGCATGTTCTGGTGTCACATTTTTCTT-GTCGAGGAACCATCGCCAGAGCATCGTCG
62 TGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCAGAGCATCGTCG
* ** *
16609997 GAGAAACC-GACCGACGGCATT-GGGTTCAGGTGATCGGGGGGCCGGGGGTTGTGCGCGCATGAT
127 GAG-AACCTGACCGACGGCATTGGGGTTCCGACGATC-----G--GGGGGTTGTGCGCACATGAT
* * * *
16610060 GTGCGATGGGTACTTGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAGT
184 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
16610125 CACACCCCCTTAAAAAGCATCTAAGATTTTACAGGTTTTCTGCCAGTAGCCATTAAAGTGTCTGA
249 CACACCCCCTTAAAAAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * * * *
16610190 AA-CGGGATACTTTTTTCGAATGGTCACAAATCTTGTCCACTTCGTGTTTTTAGCTGA-TTTTTT
314 AATGGGGACACTTTTTTCAAATGGTCACAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTT
* * **
16610253 TGTGCATGCCAAAAAAATACAA-GATCAAGTCTACCAAGTTTGGGGCCAAAAATCCATCCGAAAA
379 TGTGCATGCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCC-TTTGAAAA
* *
16610317 AATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCT
443 AATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATAAAAAATAGAAAACGAGTCGTCT
* * *
16610382 TGCCATGAAACTTCACG-TGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCAATGAAAATG
508 TGCCATGAAACTTCATGTTGAAGGCTTAA-GGACCATTGTATGAATTTACAAGCC-ATAAAAATG
* * *
16610446 GCATTTGGAACGCAGAAATATGAAGATGTGCCTAAACCCACCTAACCACCCTATCGATCCACTGC
571 GCA-TTGGAATGCAGAAATATGAAGATGGGCCTAAACCCACCT-ACCACCCTATCGATCCACGGC
*
16610511 TTGCGCATCTCGTCTCTCTGGCCAGCGTAGTGCCCGCCCGCCCGCCCGACCGCTTCGTTTCGTCA
634 TTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCG-CCGCCCG-CCGACCGC-TCGTTTCGTCA
* *
16610576 GATGGCTTAT
696 GTTGGCTTAC
** * * * *
16610586 GCATACGGAGTTCATTCCCAGGTCTAAAATTGAATCGGACCGCAGGGTTGCAGCAGCACATGCTG
1 GCATATAGAGTTCATTCCCA-GTCTAAGATCGAATCAGACCG-AGGGTTGCGGCAGCACATGCTG
* * *
16610651 GGCTCAGGCATGTGCTGGCTGCCGCA-TTTTCTTCGCCGGGGCACCATCGTCAGAGCATCATCGG
64 GGCTCAGGCATGTGCTGG-TGCCACATTTTTCTTCGCCGGGGCACCATCGCCAGAGCATCGTCGG
* * *
16610715 AGAAACCTGACCGACGGGCATTAGCGGTTCCGACGATCGGTGGGG-TGTGCTCACATGGGTGTGC
128 AG-AACCTGACCGAC-GGCATT-GGGGTTCCGACGATCGG-GGGGTTGTGCGCACAT-GATGTGC
* *
16610779 GATGGGTG-TGGTAC-TGGCCCATATATTGGCCCCCCTATCCCTCTATCAAACCTCAAGAACTCA
188 GATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCCTATCCCTC-ATCAAACCTCGAGAACTCA
* ** *
16610842 CCACCCCATTTAAGGAGCATTTTCAGATTTTACAGGTTTGCTCCCAGTAGCCATTAAAAGTGTCT
251 -CACCCC-CTTAAAAAGCA-TTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATT-AAAGTGTCT
* *
16610907 GGAAATGGGGATACTTTTTTCAAATTGTCCACAAAAATCTTGTACACTTCGAGTTTGTTAGCTGC
312 -GAAATGGGGACACTTTTTTCAAATGGT-CAC--AAATCTTGTACACTTCGAGTTT-TTAGCTG-
* * * * *
16610972 ATTTTTTTTGTGCATGCAAAAAAAAGATAAGGATTCAAGGTTCTACCAAGTTT-GGGCCGAAACT
371 ATTTTTTTTGTGCATGCAAAAAAAATACAAGGA-TC-ACG-TCTACCAAGTTTGGGGCCAAAAAT
* * *
16611036 CTTCTTTGAAAAAA-TTTAAAAAATCCCGGAACCGGTAAAAAGTTTCAAAAATCATGAAAAATAG
433 C--CTTTGAAAAAATTTTAAAAAAT-CCTGAACC-GCAAAAAGTTTCAAAAATCATAAAAAATAG
*
16611100 AAAACGGAGTCGTTCTTGCCATGAAACTTCATGTTGAAGGCTTAAGCACCATTGTATGAATTTAC
494 AAAAC-GAGTCG-TCTTGCCATGAAACTTCATGTTGAAGGCTTAAGGACCATTGTATGAATTTAC
16611165 AAGCCATAAAAATGG-ATTGG-ATGCAGAAATATGAAGATGGGCCTAAACCCACCTACCACCCTA
557 AAGCCATAAAAATGGCATTGGAATGCAGAAATATGAAGATGGGCCTAAACCCACCTACCACCCTA
*
16611228 TCGATCCACGGCTCGCGCATCCCGTCTCTCTGGCCAGCGTAGTTGCCCGCCGCCCGCCGA-CGCT
622 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAG-TGCCCGCCGCCCGCCGACCGCT
*
16611292 CGTTTCGTTAGTTGGCTTAC
686 CGTTTCGTCAGTTGGCTTAC
*
16611312 GCATATAGAGTTCATTCCCAGTGTAAGATCGAATCAGACCGAGGGTTTGCGGCAGCACATGCTGG
1 GCATATAGAGTTCATTCCCAGTCTAAGATCGAATCAGACCGAGGG-TTGCGGCAGCACATGCTGG
* * * ** * * *
16611377 TCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGCCGAAG
65 GCTCAGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCAGAGCATCGTCGGAG
* * *
16611442 AACCTGACCGACGGCATTGGGGTTCCGTCGATAGGGGCCCGGGGGG-TGTGCGGACATGATATGC
130 AACCTGACCGACGGCATTGGGGTTCCGACGAT-------CGGGGGGTTGTGCGCACATGATGTGC
*
16611506 GATGGGAGCTGGTACTTGGCCCTTATATTGGCCCCCTAT-CCTCATCAAACCTCGAGAACTCACA
188 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
16611570 CCCCCTTAAAGAGCATTTCAGATTTTACA-GTTTGCTGCCAGT-GCCACTAATGTGTCTGAAATG
253 CCCCCTTAAAAAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
16611633 GGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTAT
318 GGGACACTTTTTTCAAATGGTCAC-AAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGT
*
16611697 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAAA
382 GCATG-CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTT-GAAAAAA
** * * *
16611762 TTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAGTCGTAAAAAATAGAAAATGAGTCGTCTTG
445 TTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATAAAAAATAGAAAACGAGTCGTCTTG
*** *
16611827 CCATGAAACTTCA-CACGAAGGCTTAGGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
510 CCATGAAACTTCATGTTGAAGGCTTAAG-GACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * * *
16611891 TTGGCATCCAGAAATATAAAGATGTGTCTAAACCCACCTACCACCCTATCGATACACGGCTTGCG
574 TTGGAATGCAGAAATATGAAGATGGGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * ** * * * ** * * *
16611956 TATCCCGTCTCTCTAGCTGGCATACTGACCGCCCGGTCGCCCGCTCCGCTCGTTTCATCGGTTGG
639 CATCCCGTCTCTCTGGCCAGCGTAGTGCCCG-CCGCCCG-CCG-ACCGCTCGTTTCGTCAGTTGG
*
16612021 CTTAAG
701 CTT-AC
** * * * * * *
16612027 GCATACGGAGTTCATTTCCAATCTAAAATCGAACCACACCGAGGGTTGCGGTAGCA
1 GCATATAGAGTTCATTCCCAGTCTAAGATCGAATCAGACCGAGGGTTGCGGCAGCA
16612083 GGATCTGTAG
Statistics
Matches: 1908, Mismatches: 208, Indels: 203
0.82 0.09 0.09
Matches are distributed among these distances:
708 10 0.01
709 51 0.03
710 16 0.01
711 110 0.06
712 29 0.02
713 42 0.02
714 89 0.05
715 110 0.06
716 105 0.06
717 142 0.07
718 112 0.06
719 67 0.04
720 18 0.01
721 49 0.03
722 128 0.07
723 124 0.06
724 89 0.05
725 143 0.07
726 102 0.05
727 64 0.03
728 40 0.02
729 74 0.04
730 60 0.03
731 31 0.02
732 35 0.02
733 15 0.01
734 42 0.02
735 11 0.01
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (705 bp):
GCATATAGAGTTCATTCCCAGTCTAAGATCGAATCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCAGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCAGAGCATCGTCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGTTGTGCGCACATGATGTGCGATGGGTG
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
AAAAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
TTTTTCAAATGGTCACAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCAAA
AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTGAAAAAATTTTAAAAAAT
CCTGAACCGCAAAAAGTTTCAAAAATCATAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
CATGTTGAAGGCTTAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAATGCAGA
AATATGAAGATGGGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
CTGGCCAGCGTAGTGCCCGCCGCCCGCCGACCGCTCGTTTCGTCAGTTGGCTTAC
Found at i:16612223 original size:26 final size:26
Alignment explanation
Indices: 16612186--16612264 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
16612176 GTTGACTTAG
*
16612186 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16612212 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16612238 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16612264 G
1 G
16612265 ATCGGACTAG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16614063 original size:706 final size:691
Alignment explanation
Indices: 16612238--16614411 Score: 2692
Period size: 706 Copynumber: 3.1 Consensus size: 691
16612228 CCCAGTCTAA
* *
16612238 GCATACGGAGTTCATTCCCTGTCTAAGATCGGACTAGA-CGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * * *
16612302 CTCGGGCATGTGCTGGTTTCGCATTTTTCTTTGCCGGGGCACCATCGTCGGGGCATCGTCGAAGA
66 CTCGGGCATGTGCTGGTGTCGTATTTTTCTTCGTCGGGGCACCATCGT-----CA-----G-AGA
16612367 ACCTGACCGACGGATTGGGGTTCCTGCGATCGGGGGGATCGGGGGGTGTGCGCGCATGATGTGTG
120 ACCTGACCGACGGATTGGGGTTCC-GCGATCGGGGGG--CGGGGGGTGTGCGCGCATGATGTGTG
*
16612432 ATGGGTGCTTGTACTT-GCCCTTATATTGG-CCCCTATCCCTCATCAAA-CTCGAGAAGTCACAC
182 ATGGGTGCTTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * * * * *
16612494 CCCTTTAAAAAGCATCTAAGATTTTATAGGTTTGCTGTCAGTAGCCATTAAGTGTCTGAAATGGG
247 CCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATAAAGTGTCTGAAATGGG
*
16612559 ACACTTTTTTTGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGATGTTTTTTGTGCA
312 ACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAT-TTTTTTGTGCA
* *
16612624 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAAACTCCTTCCGAAAGAATT
376 TGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAACACCTTCCGAAAAAATT
* * * *
16612688 TGAAAAATCCCT-AACCG-TAAAAGTTTCTGAAAATCGTG-AAAATAAAGAAACAGTCGTCTTGC
439 TAAAAAAT-CCTGAACCGCAAAAAGTTTC-AAAAATCGTGAAAAATAGA-AAACAGTCGTCTTGC
16612750 CATTAAACTTTCACGTGAA-GCTTAAGGGACCATTGTATGAATTTTACAAGCCATAAAAATGGCA
501 CATTAAAC-TTCACGTGAAGGCTTAAGGGACCATTGTATGAA-TTTACAAGCCATAAAAATGGCA
*
16612814 TTGGCTCGCAAG-AATATGAAGAT-TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
564 TTGG--CACAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
16612877 GAATCCCGTCCTCTGGCCGAACGTAGT----GCCCGCCCGCCCG-TCGTTTCATCGGTTGGCTTT
627 GCATCCCGTCCTCTGGCCG-ACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC-TT
16612937 AG
690 AG
* *
16612939 GCATACGGAGTTCATTCCCCAGTCTAAGATCGGACC-GACCGAGGGTTGCGACAGCACATGCTTG
1 GCATACGGAGTTCATT-CCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGC-TG
** * *
16613003 GGCTCAAGCAATGTGCTGGTTGCCGTA-TTTTCTTC-TCGCTGGGAACATCGCCAGAGCATTGTC
64 GGCTCGGGC-ATGTGCTGG-TGTCGTATTTTTCTTCGTCG--GGG--CA----C----CATCGTC
* * * * *
16613066 GGAGAACCTGACCGACGGAATTGGGGTTCAGGTGATC-AGGGGCGGGGAGGTGTGCACGCATGAT
115 AGAGAACCTGACCGACGG-ATTGGGGTTC-CGCGATCGGGGGGCGGGG-GGTGTGCGCGCATGAT
* *
16613130 GTGTGATGGGTACTTGTACATTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAAC
177 GTGTGATGGGTGCTTGTAC-TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * *
16613195 TACACACCCCCTTAAAAGAGCGTTTGAAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGT
241 T-CACACCCCCTT-AAAGAGCATTTG-AGATTTTATAGGTTTGCTGCCAGTAGCCA-TAAAGTGT
* * * *
16613260 CTGAAATGGGGATACTTTTTTCGAATGGTCACAAAATCTTGTACACTTTGACTTTTTAATTGATT
302 CTGAAAT-GGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGATT
*
16613325 TTTTTGTGCATGCCAAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACACCTTC
366 TTTTTGTGCATGCC--AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTC
*
16613390 CGAAAAAAAATTTAAAAAAATCCTGAACCGCAAAAAAGTTTC-AAAATCATGAAAAATAGAAAAC
429 CG--AAAAAATTT-AAAAAATCCTGAACCGC-AAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
16613454 -GATCGTCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
490 AG-TCGTCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
*
16613518 AAAAATGGCATTGGCACATAGAAATATGAAGATGTGCC-AAACCCACCTACC-CACTATCGATCC
554 AAAAATGGCATTGGCACA-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * *
16613581 ACGGCTTGTGCATCCCGTCTCTCTGGCCCGACGTAGTGCCCGCCCGCCCGCCCGCTCATTTTGTC
618 ACGGCTTGCGCATCCCGTC-CTCTGG-CCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTC
16613646 GGTTGGCTTAG
681 GGTTGGCTTAG
* * *
16613657 GCATACGGAGTTCATTCTCAGTCTAAGATCGAACCAGACTGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * *
16613722 CTTGGGGCATGTGCTGGTGTCATATTTTTCTTCGTCGGGGCACCATCGTCAGAGAACCTGACCGG
66 C-TCGGGCATGTGCTGGTGTCGTATTTTTCTTCGTCGGGGCACCATCGTCAGAGAACCTGACCGA
* * *
16613787 CGGCATTGAGGTTCCGACGATCGGGGGTGCCGGGGCGGTTGTGCGCACATGATGTGCGATGGGTG
130 CGG-ATTGGGGTTCCG-CGATCGGGGG-G-CGGGG-GG-TGTGCGCGCATGATGTGTGATGGGTG
* * *
16613852 CTGGTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTA
189 CTTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* *
16613917 AAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAATTAGGGACAAT
254 AAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCA-TAAAGTGTCTGAAAT-GGGACACT
* *
16613982 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTATTTTT-TGCATGCC
317 TTTTTCGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTG-ATT-TTTTTGTGCATGCC
* *
16614046 AAAAAAATTATAAGGATCACGTCTACCAAGTTTGGGGCC-AAACCCCTTCCGAAAAAATTTTAAA
380 AAAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAAA-TTTAAA
* *
16614110 AAATCCTGAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAA
443 AAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC-AGTCGTCTTGCCATTAA
* * *
16614175 CCTTCACGTGAAGGCTTAAGGGACCATTGAATGAACTTACAAGCCATAAAAATGGCATTGGCATC
507 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-C
* * * *
16614240 CAGAAATATGAAG-TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCTTGCTGT
571 AAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * *
16614304 CCCTCTGGCCGACGAAATGCTCGGCTGCCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAG
636 -CCTCTGGCCGACGTAGTGC-C--C-GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * *
16614365 GCATAAGGAGTTCATTCCTAGTCTAAGATCGGATCAGACCGAGGGTT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT
16614412 GTGGTAGCAG
Statistics
Matches: 1284, Mismatches: 114, Indels: 143
0.83 0.07 0.09
Matches are distributed among these distances:
701 18 0.01
702 52 0.04
703 93 0.07
704 150 0.12
705 89 0.07
706 171 0.13
707 36 0.03
708 100 0.08
709 58 0.05
710 56 0.04
711 30 0.02
712 95 0.07
713 37 0.03
714 87 0.07
715 74 0.06
716 15 0.01
717 48 0.04
718 61 0.05
719 14 0.01
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.27
Consensus pattern (691 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGTCGTATTTTTCTTCGTCGGGGCACCATCGTCAGAGAACCTGACCGAC
GGATTGGGGTTCCGCGATCGGGGGGCGGGGGGTGTGCGCGCATGATGTGTGATGGGTGCTTGTAC
TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
TTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATAAAGTGTCTGAAATGGGACACTTTTTTCGAA
TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGATTTTTTTGTGCATGCCAAAAAAATACA
AGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTAAAAAATCCTGAACCG
CAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAGTCGTCTTGCCATTAAACTTCACGTGAAGG
CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAAGAAATATGAAGAT
GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCCTCTGGCCGACGTA
GTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
Found at i:16616331 original size:26 final size:26
Alignment explanation
Indices: 16616292--16616344 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16616282 GTTGACTTAG
16616292 GCATATGGACTTCATTCCCAGTCTAA
1 GCATATGGACTTCATTCCCAGTCTAA
**
16616318 GCATATGGTGTTCATTCCCAGTCTAA
1 GCATATGGACTTCATTCCCAGTCTAA
16616344 G
1 G
16616345 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATATGGACTTCATTCCCAGTCTAA
Found at i:16616956 original size:888 final size:889
Alignment explanation
Indices: 16613657--16618220 Score: 5585
Period size: 895 Copynumber: 5.1 Consensus size: 889
16613647 GTTGGCTTAG
* * *
16613657 GCATACGGAGTTCATTCTCAGTCTAAGATC-GAACCAGACTGAGGGTTACG-GCAGCACATGCTG
1 GCATA-GGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTACGAG-AGCACATGCTG
* * * ** * *
16613720 GGCTTGGGGCATGTGCTGGTGTCATATTTTTCTTCGTCGGGGCACCAT---C---G---T--CAG
63 GGC-TCGGGCATGTGCGGGTGCCGCATTTTTCTTCCT-GGGGCACCATCCCCGGAGCATTGCCGG
* * ** * *
16613774 AGAACCTGACCGGCGGCATTGAGGTTCCGACGATCGGGGGTGCCGGG-GCGGTTGTGCGCACATG
126 AGAACCTGACCGGCGGCATTGGGGTTCTGGTGATCGGGGG-GCCGGGAGGGGGTGTGCGCACATG
* * *
16613838 ATGTGCGATGGGTGCTGGTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAA
190 ATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGG-CTCCTATCCCTCATCAAACCTTGAGAA
* *
16613903 CTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCACTAAAGTGTCT
254 CTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * * *
16613968 GAATTAGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTA
318 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCAGAATT-
* *
16614033 TTTTT-TGCATGCCAAAAAAATTATAAGGATCACGTCTACCAAGTTTGGGGCC-AAACCCCTTCC
382 TTTTTGTGCATGCCAAAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
** **
16614096 GAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACAAGT
446 GAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGT
* * *
16614161 CGTCTTGCCATGAACCTTCACGTGAAGGCTTAAGGGACCATTGAATGAACTTACAAGCCATAAAA
511 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
16614226 ATGGCATTGGCATC-CAGAAATATGAAG-TGTGCCTAAACCCACCTACCACCCTATCGATCCACG
576 ATGGCATTGGCA-CACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * * * * *
16614289 GCTTGCGCTTGCTGTCCCTCTGGCCGACGAAATGCTCGGCTGCCCGCCCGCCCGCTTGTTTCGTC
640 GCTTGTGCATCCTGTCTCTCTGGCCG--G-CA---T-AG-TGCCCGCCCGCCC-ATCGTTTCGTC
* * * * * *
16614354 GGTTGGCTTAGGCATAAGGAGTTCATTCCTAGTCTAAGATCGGA-TCAGACCGAGGGTTGTGGTA
696 GGTT-GCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACT-GGACCGAGGGTTG-GGCA
* * * * * * *
16614418 GCAGGATCAGCAACACGTAGAAGGGGACTC-GATCGATCCC-CGCCTTGCGCATCCCGCCCCTCT
758 GCAGGATCGGTAGCATGTAG-AGGGGACCCAG-TCAATCCCTCGGCTTGCGCATCCCGCCCCTCT
* * * * *
16614481 GGCCGGCTGAGCGCCCGCAAGCTCTTTTCGTGGGTTGATTTAGGCATACGGAGTTCATTCCTAGT
821 GGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
16614546 CT--
886 CTAA
* * *
16614548 ---T---AG---ATT----G-----GAT-----CGGACCGAGGGTTGCGGGAGCACATTCTGGGC
1 GCATAGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGAGAGCACATGCTGGGC
* * * * * * *
16614590 TCCGGCATGTGCTGGAGCCGTATTTTTCTTCCGTCGGGACACCAATCGCCGGAGCA-TCCTCGGA
66 TCGGGCATGTGCGGGTGCCGCATTTTTCTTCC-T-GGGGCACC-ATCCCCGGAGCATTGC-CGGA
* * * * *
16614654 CAAACCTGGACC-GCGGCAATTGGGGTTCTGATGATCGGAGGGG--GGCCAGGCGGGTCT-AGCA
127 -GAACCT-GACCGGCGGC-ATTGGGGTTCTGGTGATCGG-GGGGCCGG-GAGG-GGGTGTGCGCA
* * *
16614715 GATTGATATGCGATGGGTGCTGGTACTT-GCACCTTAGTATTGGCTCCCTATTCCCTCATCAAAC
186 CA-TGATGTGTGATGGGTGCTGGTACTTGGC-CCTTA-TATTGGCT-CCTA-TCCCTCATCAAAC
* * *
16614779 CTTTAGACCCTCACACCCCTTAAAGAGCATGGTGAGATTTTTTACAGTGTTTGCTTGCCAGTAGC
246 CTTGAGA-ACTCACACCCCTTAAAGAGCAT-TTGAGA--TTTTACAG-GTTTGC-TGCCAGTAGC
* *
16614844 CATTAAAATGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTAGTT
305 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-T
*
16614909 TTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
369 TTTTAGCAGAATTTTTTTGTGCATGCC-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* *
16614974 CAAAACTCCTTCCGAAAAAATTTTTAAAAATCCCAAACCACAAAAAGTTTTCAAAAATCATGAAA
433 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAG-TTTCAAAAATCATGAAA
*
16615039 AATAGGAAAAC-AGTCGTCTTGCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGAAT
497 AATA-GAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
16615103 TTAACAAGCCATAAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACC
561 TT-ACAAGCCAT-AAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACC
*
16615168 ACCCTATCGATCCACGGCTTGTGCATCCTGTCTCTCTAGCCGGCATAGTGCCCCGCCCGCCCACT
624 ACCCTATCGATCCACGGCTTGTGCATCCTGTCTCTCTGGCCGGCATAGTG-CCCGCCCGCCCA-T
* *
16615233 CGTTTCGTCGGTTGCCTTA-GCATACGTAGTTCATTCCCAATCTAAGATCAGACTGGATCGA-GG
687 CGTTTCGTCGGTTG-CTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACTGGACCGAGGG
* * *
16615296 TTTGGCAGCAGGATCGGTAGCATGCAGAGGGAGA-CCAGTCAATCCC-CCG-TTGCACGCATCCC
751 TTGGGCAGCAGGATCGGTAGCATGTAGAGGG-GACCCAGTCAATCCCTCGGCTTG--CGCATCCC
* * *
16615358 GCCCCTCTGG-CTGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGACTTCA
813 GCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
16615422 TTCCCAGTCTAA
878 TTCCCAGTCTAA
* * * *
16615434 -CATACGTG-TCATTCCCAGTCTAAGATC-GACCGGA-CGAGGATTACGAGAGCACATTGCT-AG
1 GCATAGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGAGAGCACA-TGCTGGG
* * * *
16615494 CTCAGGCATGTGCGGGTGCCAGCA-TTTTCTTCATCGGGCACCATCCCTGGAGCATTGCCGGAGA
65 CTCGGGCATGTGCGGGTGCC-GCATTTTTCTTCCTGGGGCACCATCCCCGGAGCATTGCCGGAGA
*
16615558 ACCTGACCGGCGGCATTGGAGGTTCTGGTGATCGGGGGGCCGGGAGGGGGGTGTGTGCACATGAT
129 ACCTGACCGGCGGCATTGG-GGTTCTGGTGATCGGGGGGCCGGGA-GGGGGTGTGCGCACATGAT
*
16615623 GTGTGATGGGTGCTGGTACTTGG-CC-TATATTGGCTCCTATCCCTCATCAAACCTCGAGAACTC
192 GTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCTATCCCTCATCAAACCTTGAGAACTC
* *
16615686 ACACCCCTTAAAGAGCATTTCAGATTTTACAGGTTATGCTGCCAGTAGCCATTAAAGTGTTTGAA
257 ACACCCCTTAAAGAGCATTTGAGATTTTACAGGTT-TGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
16615751 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGCTTTTAGCAGAATTTTTT
321 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCAGAATTTTTT
*
16615816 TGTGCATGCCAACCAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
386 TGTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
*
16615881 AAATTTTAAAAAATCCCAAACCGCAAAAGGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTC
450 AAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTC
*
16615946 TTGCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
515 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
16616011 CATTGGCACACAAAAATATGAAGATATGCCTAAACCCACCTACCACCCTGTCGATCCACGGCTTG
580 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
16616076 TGCATCCTGTCTCTCTGGCCGGCATAGTGCCCG-CCG-CCATCG-TTCGTCGGTTGCTTAGGCAT
645 TGCATCCTGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCATCGTTTCGTCGGTTGCTTAGGCAT
*
16616138 ACGTAGTTCATTCCCAATCTAAGATCAGACTGGA-CGAGGGTGTGGGCAGCAGGATCGGTAGCAT
710 ACGGAGTTCATTCCCAATCTAAGATCAGACTGGACCGAGGGT-TGGGCAGCAGGATCGGTAGCAT
* * *
16616202 GCAGAGGGGACCCAGTCAATCCCTGGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCAACCGC
774 GTAGAGGGGACCCAGTCAATCCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGC
* *
16616267 ACGCTCGTTTCGTGGGTTGACTTAGGCATATGGACTTCATTCCCAGTCTAA
839 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
16616318 GCATATGGTGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCACATGCTAGG
1 GCATA-GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGAGAGCACATGCTGGG
* *
16616383 CTCGGGCATGTGCGGGTACCGCATTTTTCTTCACTGGGGCACCATCCCCGGAGGCATTGTCGGAG
65 CTCGGGCATGTGCGGGTGCCGCATTTTTCTTC-CTGGGGCACCATCCCCGGA-GCATTGCCGGAG
* * *
16616448 AACCTGACAGGCGGCATTGGGGTTCTGGTGATCGGAGGGCCGGGAGGGGGTGTGTGCACATGATG
128 AACCTGACCGGCGGCATTGGGGTTCTGGTGATCGGGGGGCCGGGAGGGGGTGTGCGCACATGATG
*
16616513 TGTGAT-GGTGCTGGTACTTGGCCCTTATATTGGCTCCTATCCCTCATCAAACCTCGAGAACTCA
193 TGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCTATCCCTCATCAAACCTTGAGAACTCA
* *
16616577 CACCCCTTTAAAGAGCAGTTTCAGA-TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAA
258 CACCCC-TTAAAGAGCA-TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
16616641 ATGGGGACACTTTTTTCAAATGGTCAC-AAATCTTGTACACTTCGAGTTTTTAGCAG-ATTGTTT
321 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCAGAATTTTTT
16616704 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG-AA
386 TGTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
16616768 AAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTC
450 AAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTC
*
16616833 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGGAATTTGCAAGCCATAAAAATG
515 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT-GAATTTACAAGCCATAAAAATG
*
16616898 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTGTCGATCCACGGCTT
579 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
16616963 GGTGCATCCCGTCTCTCTGGCCAGCGTAGCGCCCGCCCGCCGCCCACTCGTTTCGTCGGTTGCCT
644 -GTGCATCCTGTCTCTCTGGCCGGCATAGTGCCCG--C-CCGCCCA-TCGTTTCGTCGGTTG-CT
* * ** **
16617028 TAGGCATACGGAGTTCATT-CTAATCTAAGATCAGACCGGA-TTACGGGTTATGCAGCAGGATCG
703 TAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACTGGACCGA-GGGTTGGGCAGCAGGATCG
* * * *
16617091 GCAGCATGTAGAGGGGGAACCCAGTCAATCCCT-GGCTTGCGCAGCCTG-CCCTCTGGCTGGCTG
767 GTAGCATGTAGA-GGGG-ACCCAGTCAATCCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
16617154 AGCACCCGCACGCTCG-TTCTGTGGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAA
830 AGCACCCGCACGCTCGTTTC-GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
16617213 GCATATGGAGTTCATTCCCAGTCTAAGATCAGA-CGGACCAAGGGTTACGACAGCACATCCTGGG
1 GCATA-GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGAGAGCACATGCTGGG
* * * *
16617277 CTCGAGCATGTGCGGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATTGCCGGAGA
65 CTCGGGCATGTGCGGGTGCCGCATTTTTCTTCCT-GGGGCACCATCCCCGGAGCATTGCCGGAGA
* * * * * *
16617342 ACCTGACCGACGACAAT-GGGTTCCGGTGGTCGAGGGGGCCGGGGAAGGGGTGTGCGCACATGAT
129 ACCTGACCGGCGGCATTGGGGTTCTGGTGATCG-GGGGGCC-GGGAGGGGGTGTGCGCACATGAT
** * *
16617406 GTGTGATGGGTGCTGGCGCTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTTGAGAACTG
192 GTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCTATCCCTCATCAAACCTTGAGAACTC
* *
16617471 ACACCCCCTTAAAGAGTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGCGTCTGAA
257 ACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * *
16617536 ATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTCTTAG-ATGACTTTTT
321 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCA-GAATTTTT
*
16617600 TTGTGCATGCCAAAATAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAA
385 TTGTGCATGCCAAAA-AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * * ** *
16617665 AAAAGTTTAAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGACAAATAGAAAATGAGTTG
449 AAAA-TTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCG
* *
16617730 TCTTGCCATAAAACTTCACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
513 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * * *
16617795 GGCACTGGCACGCAAAAATGTGAAGATGTGCCTAAAGCCCACCTACCACCCTATCGGTCCACGGC
578 GGCATTGGCACACAGAAATATGAAGATGTGCCTAAA-CCCACCTACCACCCTATCGATCCACGGC
* * * *** * * * * *
16617860 TTGCGCATCCCGTCTCTCTAGCCGATGTGGTGCCCGCCCGCCCGTTCATTTTGTCAGTTGGCTTA
642 TTGTGCATCCTGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCC-ATCGTTTCGTCGGTT-GCTTA
* * * * *
16617925 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATTGAT
705 GGCATACGGAGTTCATTCCCAATCTAAGATCAGACTGGACCGAGGGTT-GGGCAGCAGGATCGGT
** *** * * * * **
16617990 AGCACATAGAGGGGGACTTGGTCGAT-CATCGGCTTGCGCATCCCACCCCTCTGACCGATTGAGC
769 AGCATGTAGA-GGGGACCCAGTCAATCCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * * * *
16618054 GCCCGCACACTCGTTTCGTGGGTTAACTTAGGCATACAGAGTTCATTCCCACTCTAA
833 ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * *
16618111 GCATAGGGAGTTCATT-CCAATCTAAGATCAGACCGAACCAATGGTTGCAAGAGCATATACTGGG
1 GCATA-GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGAGAGCACATGCTGGG
* *
16618175 TTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGCACCATC
65 CTCGGGCATGTGCGGGTGCCGCATTTTTCTTC-CTGGGGCACCATC
16618221 GTCGGAGAAC
Statistics
Matches: 3259, Mismatches: 271, Indels: 279
0.86 0.07 0.07
Matches are distributed among these distances:
866 26 0.01
867 35 0.01
868 3 0.00
871 1 0.00
872 3 0.00
874 1 0.00
876 1 0.00
877 1 0.00
879 5 0.00
880 10 0.00
881 39 0.01
882 90 0.03
883 75 0.02
884 173 0.05
885 60 0.02
886 11 0.00
887 267 0.08
888 233 0.07
889 280 0.09
890 297 0.09
891 170 0.05
892 102 0.03
893 55 0.02
894 143 0.04
895 302 0.09
896 196 0.06
897 193 0.06
898 206 0.06
899 127 0.04
900 15 0.00
901 53 0.02
902 26 0.01
903 8 0.00
904 1 0.00
905 42 0.01
906 9 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (889 bp):
GCATAGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGAGAGCACATGCTGGGC
TCGGGCATGTGCGGGTGCCGCATTTTTCTTCCTGGGGCACCATCCCCGGAGCATTGCCGGAGAAC
CTGACCGGCGGCATTGGGGTTCTGGTGATCGGGGGGCCGGGAGGGGGTGTGCGCACATGATGTGT
GATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCTATCCCTCATCAAACCTTGAGAACTCACAC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCAGAATTTTTTTGTGC
ATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
TAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATC
CTGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCATCGTTTCGTCGGTTGCTTAGGCATACGGAG
TTCATTCCCAATCTAAGATCAGACTGGACCGAGGGTTGGGCAGCAGGATCGGTAGCATGTAGAGG
GGACCCAGTCAATCCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCG
TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:16618910 original size:26 final size:26
Alignment explanation
Indices: 16618880--16618932 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16618870 GTTGACTTAG
16618880 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
16618906 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
16618932 G
1 G
16618933 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:16620661 original size:26 final size:26
Alignment explanation
Indices: 16620632--16620707 Score: 125
Period size: 26 Copynumber: 2.9 Consensus size: 26
16620622 GTTAACTTAG
* * *
16620632 GCATACGTAGTTAATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16620658 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16620684 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
16620708 TAGATCGGAC
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16621598 original size:26 final size:26
Alignment explanation
Indices: 16621562--16621612 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
16621552 TTGACTTAGG
16621562 CATACGGAGTTCACACCCAGTCTAAT
1 CATACGGAGTTCACACCCAGTCTAAT
* **
16621588 CATATGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCACACCCAGTCTAA
16621613 GATCAGACCG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCACACCCAGTCTAAT
Found at i:16621874 original size:903 final size:893
Alignment explanation
Indices: 16619767--16624996 Score: 6322
Period size: 892 Copynumber: 5.8 Consensus size: 893
16619757 GTTAACTTAG
* * * * *
16619767 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGCAGCACTTGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATTGAGGGTTGTGGCAGCACATGCTGGG
* * * *
16619832 CTCGGGCATGTGCTGCTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* *
16619897 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGTGCCGAGGGGGCGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGG-GCCGGGGGGGTGTGCGCACATGATGTG
* * *
16619962 AGATGGGTGCTGGTACTTGGCCCCTACATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
16620027 ACCCCCTTAAAGAGTATTCGAGATTTTACAGGTTTGCTGACAATAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
16620092 GGGGACACGTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
** * * *
16620157 TGCATGCCAACGAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCATCCAAAAAA
390 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCGAAAAA
* ** * * * *
16620222 ATTTTAAAAAATCCCGGGCCGTAAAAAGCTTCAAAAATTATGAAAAATAGAAAACAAGTCATCTT
454 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * *
16620287 GCCATGGAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATAAAAATGGAA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
16620352 TTGGCATGCATAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAACGATCCACGGCTTACG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
16620417 CATCCCGTCTCTCTGGCC-G-GT-GTAGTGCCCG-CCGCTCATTTCGTCGGTTGCCTTAGGCATA
649 CATCCCGTCTCTCTGGCCGGCGTAGTACTGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATA
* * * * *
16620478 CAGAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTACGGTAGTAGGATCGACAGCACG
714 CGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGTAGAAGGATCGACAGCACG
* * * * * * * * * * *
16620543 TAGAGGGGGACCCGGTCGATCCCTGGCTTGTGCATCCTGCCTCTCTAGCCGGCTGAGAGCCCGTA
779 CAGAGGGGGACCCAGTCGATCCCCGACTTGCGCATCCCGCCCCTTTGGCCGGCTGAGCGCCCGCA
16620608 CGCTCGTTTCGTGGGTTAACTTAGGCATACGTAGTTAATTTCCAGTCTAAGCATACGGAGTTCAT
844 CGCTCGTTTCGTGGG-----TT--G---AC---------TT--AG-----GCATACGGAGTTCAT
16620673 TCCCAGTCTAA
883 TCCCAGTCTAA
* * * *
16620684 GCATACGGAGTTCATTCCCAGTCTTAGATCGGACCGGATTGAGGGTTGCGACAGCACATTCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATTGAGGGTTGTGGCAGCACATGCTGGG
* ** * * * * * * *
16620749 CTCGGGCATGTGCTGGTGTCGTATTTTTCTTCGTCAGGGCACAATTGCTGGAGAATCGCTGGGGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * *
16620814 ACTTGACCGACGGCATTGGGGTTCCGACAATTGGGGGTGCCGGGGGGGTGTGCGCACATTATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGG-GCCGGGGGGGTGTGCGCACATGATGTG
16620879 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
16620944 ACCCCCTTAAAGAGCTTTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTTAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
16621009 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTCTTAGCTGAATTTTTTTA
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
16621074 TGCATGCCAACAAAAATAGAAGGATCACGTCTACAAAGTTTGGGG-CAAAACTCCTTTCGAAAAA
390 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCGAAAAA
** * *
16621138 ATTTTAAAAAATCTCGAATTGTAAAAAGGTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTT
454 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
16621203 GCCATGAAACTTCACGTGAAGGCTGAAGGGACCATTGCATGAATTTACAAGCCATAAAAAATGGC
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAAATGGC
* * ** *
16621268 ATTGTCATGCAGAAATATGAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACAACTTGT
583 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * *
16621333 GCATCCTGTCTCTCTGGCCGACGTAGTGCCGCCCACCCGCCCGCCCGCTCGTGTCATCAGTTGTC
648 GCATCCCGTCTCTCTGGCCGGCGTAGT-------A-CTGCCCGCCCGCTCGTTTCATCGGTTGGC
* * * ** *
16621398 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGA-TCAGACTGAGGGTTGCGACAGTAGGAT
705 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACT-GGACCGAGGGTTGCGGTAGAAGGAT
* * * *
16621462 CGACAGTACGCA-ACAGGGGACCCAGCCGATCCCCGACTTGCGCATCCCGCCTCTTTGGCCGGCT
769 CGACAGCACGCAGA-GGGGGACCCAGTCGATCCCCGACTTGCGCATCCCGCCCCTTTGGCCGGCT
* * * **
16621526 GAGCGCCCGCACGCTCGTTACATGGTTTGACTTAGGCATACGGAGTTCACACCCAGTCTAA
833 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
16621587 TCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGATTGATGGG-TGTGGCAGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATTGA-GGGTTGTGGCAGCACATGCTGG
* * *
16621651 GCTCGGGCATGTGCTGGTGTCACATTTTTCTTCGTCGGGGCAGCATCACCGGAGCATCGCCGGAG
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAG
* * ** * *
16621716 AACCTGACGGGCGGCATTGGGGTTTTGGCGATTGGGGGGCCGGGGGGGTTGTGCGCACATGATGT
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGG-TGTGCGCACATGATGT
* *
16621781 GTGATGGGTGCTGGTACTTTGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
16621846 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCTAGTAGCAATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
16621911 TGGGGACACTTTTTTCAAACGGTCAGAAAATCTTATACACTTTGAGTTTTTA-CTTGAATTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC-TGAATTTTTT
* * * *
16621975 TATGCATGCCAAAAAAAATAAAAGGATCACATCT-CTCAAGTTTGGGGCCAAAACTCCTTCCAAA
388 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTAC-CAAGTTTGGGGCCAAAACTCCTT-CGAA
** * *
16622039 AAAATTTTAAAAAATC-CTGAACCGTAAAATA-TTTTTAAAATCATGAAAAATAAAAAATGAGTC
451 AAAATTTTAAAAAATCTC-GAACCGTAAAA-AGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
* *
16622102 GTCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAACTTACAAGCCATAAAAA
514 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * *
16622167 TGGCATTGGCATGTAGAAATATGAAGATTTGCCTAAACCCAACTACCACCCTATTGATCCACGGC
579 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* *
16622232 TTGCGCAACCCGTCTCTTTGGCCGGCGTAG---TGCCCGCCCGCTCGTTTCATCGGTTGGCTTAG
644 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTACTGCCCGCCCGCTCGTTTCATCGGTTGGCTTAG
* ** * * * *
16622294 GCATACGAAGTTTTTTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCAGGATC-AGC
709 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGTAGAAGGATCGA-C
* ** * * * * *
16622358 AACATACAGAGGGGGACCCGGTCGATCCCCCG-CTTGTGCATCCCACCCCTTTGGCCGGTTGAGT
773 AGCACGCAGAGGGGGACCCAGTCGAT-CCCCGACTTGCGCATCCCGCCCCTTTGGCCGGCTGAGC
*
16622422 GCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
837 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * * * *
16622479 GCATACGGAGTTCATTCCCAGCCTAAGATCGGATTGGATCGAGGGTTGCGACAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATTGAGGGTTGTGGCAGCACATGCTGGG
* * * * * * *
16622544 CTTGGGCATGTGCTCGTGCCGCATTTTTCTTCATCGAGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* ** * * *
16622609 ACCTGACCGACGGCATTAGGGTTCCGGTGATCAGGGGGCC-GGGGGTTGTGCGCACATGATATGC
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
* *
16622673 GATGGGTGTTGGTACTTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTCGAGAACTCAC
196 GATGGGTGCTGGTAC-TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
16622738 ACCCCCTAAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAACTGTCTGGAA
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT-AAAGTGTCTGAAA
* * *
16622803 TGGGGACAC-CTTTTCAAATGGTCACAAAATCTGGTACACTTCGAGTTTTTAGCTGAATTGTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
16622867 GTGCATGCCCAATAAAAATACAAGGATCACGTTCTACCAAG-TTGGGGCCAAAAACTCCTTCCAA
389 GTGCATG-CCAAAAAAAATACAAGGATCACG-TCTACCAAGTTTGGGGCC-AAAACTCCTTCGAA
* * *
16622931 AAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCCGTGAAAAATAGAAAACGGGTCG
451 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAAT-CATGAAAAATAGAAAACGAGTCG
*
16622996 TC-TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATTAAAAT
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
** * *
16623060 GGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATAGATCCACGACT
580 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* *
16623125 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTTGCTCGTTTCATCGGT
645 TGCGCATCCCGTCTCTCTGGCCGGCGTAGT-----ACTGCCCG-CC-C--GCTCGTTTCATCGGT
* * *
16623190 TGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCGGACTGGACCGAGGGTTGCAGTAGAAG
701 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGTAGAAG
* ** * * *
16623255 GGTCGGTAGCACGTAGAGGGGGACCCAGTCGATCCCC-AGCTTGCGCATCCCACCCCTCTGGCCG
766 GATCGACAGCACGCAGAGGGGGACCCAGTCGATCCCCGA-CTTGCGCATCCCGCCCCTTTGGCCG
* *
16623319 GCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
830 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
16623383 G-AT-C-G-G---------A---T----T-GGA-C----TGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATTGAGGGTTGTGGCAGCACATGCTGGG
** * * ** * * * *
16623422 CTCGGGCATGCACCGGTGTCACATTTTTCTTCACCGAGGCACCATCACTGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * * * *
16623487 ACCTGACCTACGGCATTCGGGTTTCGACGATCGGGTGTGCCGGAGGGGTGTGTGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGG-GGGCCGGGGGGGTGTGCGCACATGATGTG
* * * *
16623552 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAAACTAGGGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
16623617 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCAGCTAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
16623682 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
16623746 TGCATGCCCAAAAAAATACAAGGATCACGTCTA-CAAGTTTGGGGCCAAAAAATCCTTCTGAAAA
390 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAACTCCTTC-GAAAA
* *
16623810 AAATTTAAAAAATCT-GAACCGAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
453 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
16623874 TG-CATGAAACTTTCACGTGAAGGCTTAA-GGACCATTGTATGAATTTACAAGCCATAAGAATGG
518 TGCCATGAAAC-TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
16623937 AATTGGCATGCACAAAAATATGAAGATGTGCCCTAAACCCACCTACCACCCCTATCGATTCCACA
582 CATTGGCATG--CAGAAATATGAAGATGTG-CCTAAACCCACCTACCA-CCCTATCGA-TCCACG
* * * *
16624002 GCTTGCCGCTTCCCGTCTCTCTGGCTC-G-GT-GTAGTGCCCG-CCGCTCGTTTCGTCGGTTTGC
642 GCTTG-CGCATCCCGTCTCTCTGGC-CGGCGTAGTACTGCCCGCCCGCTCGTTTCATCGG-TTGG
* *
16624063 CTTAGGCATACGGAGTTTCGATTCCTAG-CTAAGATTAGGGATCTGGACCGAGGGTTTGCGGTA-
704 CTTAGGCATACGGAG-TTC-ATTCCCAGTCTAAGA-T-CGGA-CTGGACCGAGGG-TTGCGGTAG
* * * * * * * *
16624126 AAGGATGGCACAGCACG--TAGGGGGACCC-GACCAATCCCTGGCTTTCGCATCCTGCCCCTTTG
763 AAGGATCG-ACAGCACGCAGAGGGGGACCCAG-TCGATCCCCGACTTGCGCATCCCGCCCCTTTG
* * *
16624188 GCCAGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAAGGAGTTCATTCCCAGTC
826 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
16624253 TAA
891 TAA
** *** * *
16624256 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCAAGGGTTATGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATTGAGGGTTGTGGCAGCACATGCTGGG
* * * * *
16624321 CTTGGGCATGTGCTGGTGCCACATTTTTCTTCGCCAGGGCACCATCGCTGGAGCATCGCCAGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * ** * * *
16624386 ACCTAACCGGCGGCATTAGGGG-TCCGGTGATTGGGGGGCC-GGGGGTTGTGCTCACATGATGTG
131 ACCTGACCGACGGCATT-GGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* *
16624449 CGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
16624514 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
16624579 AGGGACACTTTTCTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
*
16624644 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCTGAAAAA
390 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-GAAAAA
* * ** *
16624709 ATTTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
454 A-TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * * * *
16624774 TGCCATGCAACATCACGTGAAGGCTTAAGGGAACATTGTATGAATTTACAAGCCATAAAAACGAC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
16624839 ATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCATGGCTTGT
583 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
16624904 GCATCCCGTCTCTCTGGCTGGCATAGTGCCCGCCTGTCCGCCCGCTCGTTTCGTCGGTTGGCTTA
648 GCATCCCGTCTCTCTGGCCGGCGTAGT-----ACTGCCCGCCCGCTCGTTTCATCGGTTGGCTTA
*
16624969 GGCATACGGAGTTCATTCCCAATCTAAG
708 GGCATACGGAGTTCATTCCCAGTCTAAG
16624997 CATACAGAGT
Statistics
Matches: 3741, Mismatches: 452, Indels: 256
0.84 0.10 0.06
Matches are distributed among these distances:
869 13 0.00
870 17 0.00
871 10 0.00
872 11 0.00
873 100 0.03
874 25 0.01
875 89 0.02
876 65 0.02
877 57 0.02
878 154 0.04
879 151 0.04
880 45 0.01
881 19 0.01
882 1 0.00
883 3 0.00
884 1 0.00
886 1 0.00
888 1 0.00
889 1 0.00
890 30 0.01
891 158 0.04
892 542 0.14
893 47 0.01
894 4 0.00
895 19 0.01
896 10 0.00
897 207 0.06
898 78 0.02
899 138 0.04
900 77 0.02
901 58 0.02
902 37 0.01
903 510 0.14
904 299 0.08
905 1 0.00
908 2 0.00
910 2 0.00
916 124 0.03
917 476 0.13
919 4 0.00
920 2 0.00
922 1 0.00
924 2 0.00
927 1 0.00
928 6 0.00
929 142 0.04
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (893 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATTGAGGGTTGTGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAAAT
TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGGCGTAGTACTGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGTAGAAGGATCGACAGCACGCA
GAGGGGGACCCAGTCGATCCCCGACTTGCGCATCCCGCCCCTTTGGCCGGCTGAGCGCCCGCACG
CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:16622489 original size:26 final size:26
Alignment explanation
Indices: 16622453--16622505 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16622443 GTTGACTTAG
*
16622453 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
16622479 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
16622505 G
1 G
16622506 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:16623833 original size:25 final size:26
Alignment explanation
Indices: 16623805--16623853 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
16623795 AAATCCTTCT
16623805 GAAAAAAATTTAAAAAATC-TGAACC
1 GAAAAAAATTTAAAAAATCATGAACC
* *
16623830 GAAAAAAGTTTCAAAAATCATGAA
1 GAAAAAAATTTAAAAAATCATGAA
16623854 AAATAGAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 17 0.81
26 4 0.19
ACGTcount: A:0.59, C:0.10, G:0.10, T:0.20
Consensus pattern (26 bp):
GAAAAAAATTTAAAAAATCATGAACC
Found at i:16624266 original size:26 final size:26
Alignment explanation
Indices: 16624230--16624282 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16624220 GTTGACTTAG
16624230 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
*
16624256 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
16624282 G
1 G
16624283 ATCGGACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:16625006 original size:26 final size:26
Alignment explanation
Indices: 16624970--16625022 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16624960 GTTGGCTTAG
*
16624970 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
16624996 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
16625022 G
1 G
16625023 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:16625895 original size:26 final size:26
Alignment explanation
Indices: 16625854--16625907 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
16625844 GGGTTGACTT
*
16625854 AGCATACGGAGTTCATTCCCAGTCTA
1 AGCATACGGAGTTCATTCCCAGCCTA
16625880 AGCATACGGACG-TCATTCCCAGCCTA
1 AGCATACGGA-GTTCATTCCCAGCCTA
16625906 AG
1 AG
16625908 ATCGACTGGA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (26 bp):
AGCATACGGAGTTCATTCCCAGCCTA
Found at i:16627131 original size:877 final size:865
Alignment explanation
Indices: 16624995--16627529 Score: 2983
Period size: 877 Copynumber: 2.9 Consensus size: 865
16624985 TCCCAATCTA
* * *
16624995 AGCATAC-AGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGCGGCATCACATGCTG
1 AGCATACGA-AGTTCATTCCCAGTCTAAGATCGGATTGGACTGAGGGTTGCGGCAGCACATGCTG
*** * * * * *
16625059 GGCTAGGGCATTTGTTGGTGTCGCATTTTTCTTCGTCG-GTGCACCATCACCGGAGCATCATCGG
65 GGCTAGGGCATGCATCGGTGTCGCATTTTTCTTC-ACGAGAGCACCATCACTGGAGCATCGTCGG
* * * * *
16625123 AGAACCTGAATGGCAGCATTGGGGTTCCGACAATCGGGGGGGGCCGGGGGGTGTGCGCAC--A-T
129 AGAACCTGACT-ACGGCATTAGGGTTCCGACGATC---GGGGGCCGGGGGGTGTGCGCACAGATT
* *
16625185 --GAT--GTGCTGGTACTTCACCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
190 GCGATGGGTGCTGGTACTT-GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTAGAGAACTCA
** * *
16625246 CACAGCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAA
254 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
16625311 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
319 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* ** *
16625376 GTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGTTGCCAAAAATCCTTCCGAAAA
384 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAA
* *
16625441 AATTTTAAAAAATCCCTGAACCGTAAAATAGTTTC-AAAATCATGAAAAATAGAAAAATGAGTCG
448 AATTTTAAAAAATCTC-GAACCGTAAAA-AGTTTCAAAAATCATGAAAAATAG-AAAA-GGGTCG
* *
16625505 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAACTTACAAGCCATAAAAAT
509 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * * *
16625570 GGCATTGGCATGTAGAAAATATGAAGATTTGCCTAAACCCAACTACCACAACCCTATGGATCCAC
574 GGCATTGGCACGCAG-AAATATGAAGATGTGCCTAAACCCACCTA-C-C-ACCCTATAGATCCAC
* *
16625635 GGCTTGCGCAACCCGTCTCT-TGGCC-GC-TAGT------GCCTG-CC-CGCTCGTTTCATCGGT
635 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTCCCGCCGCCCGCCCGCGCTCGTTTCATCGGT
* * * *
16625689 TGGCTTAGGCAATACGAAGTT-TTTCCCACGTCT-AGATCAGACTGGACCGA-GGTTG-TGCAGC
700 TGGCTTAGGC-ATACG-AGTTCATTCCCA-GTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGA
* *
16625750 AGGATCAACAACATACAGAGGGGACACCGGCCGATCGCCCGCTTGTGCACTCCCACCCCCTCCTG
762 AGGATCAACAACATACAGAGGGGACACCAGCCGATCGCCCGCTTGCGCACTCCCACCCCCTCCTG
* * *
16625815 GCGGTTGAGTGCCCGCACGCTTGTTTCGTGGGTTGACTT
827 GCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
*
16625854 AGCATACGGAGTTCATTCCCAGTCTAAGCATACGGACGTCATTCCCAGCCTAAGATCGACTGGAT
1 AGCATACGAAGTTCATTCCCAGTCTAAG-AT-C-G--G--A-T-------T--G---GAC----T
* * * * *
16625919 CGAGGGTTTGCGACAGCACATGCTAGGCTTGGGCATGTGCTTC-GTGCCGCCATTTTTTTCTTCA
42 -GAGGG-TTGCGGCAGCACATGCTGGGCTAGGGCA--TGCATCGGTGTCG-CA--TTTTTCTTCA
* * * **
16625983 CGAGAGTACCATC-GTCGGAGCATCGTC-GAGGAACGCTGACGAGCGGCATTAGGCGTTCCGTGT
100 CGAGAGCACCATCACT-GGAGCATCGTCGGA-GAAC-CTGACTA-CGGCATTAGG-GTTCCG-AC
* * * *
16626046 GATCAGGGGCCGGGGGTTGTGCGCCACAAGATATGCGATGGGT-TTGGTACTTGCCCTTATATTT
159 GATCGGGGGCCGGGGGGTGTGCG-CAC-AGAT-TGCGATGGGTGCTGGTACTTGCCCTTATATTG
* *
16626110 GCCCCCTATCCTTCATCAAACCTCGAGAACTCACACCCCC-TAAAGAGCATTTGAGATTTTACAG
221 GCCCCCTATCCCTCATCAAACCTAGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* * * *
16626174 GTTTG-TTCCAGTAGCCATTAAACTGTCTGGAAT-GGGACACCTTTTTCAAATGGTCACAAAATC
286 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* *
16626237 TGGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
351 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTC
*
16626302 TACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTC
416 TACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTC
*
16626367 AAAAATCGTGAAAAATAGAAAACGGGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
481 AAAAATCATGAAAAATAGAAAA-GGGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* *
16626432 CATTGTATGAATTTACAAGCCATTAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAA
545 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAA
*
16626497 CCCACCTACCACCCTATAGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC
610 CCCACCTACCACCCTATAGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT-CCCG-
*
16626562 CCGCCCGCCCGCTTGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGA
673 CCGCCCGCCCGC--GCTCGTTTCATCGGTTGGCTTAGGCATAC-GAGTTCATTCCCAGTCTAAGA
** * * * * * *
16626627 TTGGACCGGATCGAGGGTTGCAGTAGAAGGATCGGTAGC-ACGTAGAG-GGGGAC-CCAGTCGAT
735 TCAGACCGGACCGAGGGTTGCAGCAGAAGGATC---AACAACATACAGAGGGGACACCAGCCGAT
*
16626689 C-CCCAGCTTGCGCA-TCCCA-CCCCT-CTGGCCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGT
797 CGCCC-GCTTGCGCACTCCCACCCCCTCCTGG-CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
16626750 TGACTT
860 TGACTT
* *
16626756 AGGCATACGAAGTTCATTCCCGGTCTAAGATCGGATTGGACTGAGGGTTGCGGTAGCACATGCTG
1 A-GCATACGAAGTTCATTCCCAGTCTAAGATCGGATTGGACTGAGGGTTGCGGCAGCACATGCTG
* *
16626821 GGCTCGGGCATGCACCGGTGTCGCATTTTTCTTCACCGAG-GCACCATCACTGGAGCATCGTCGG
65 GGCTAGGGCATGCATCGGTGTCGCATTTTTCTTCA-CGAGAGCACCATCACTGGAGCATCGTCGG
* * *
16626885 AGAACCTGACCTACGGCATTCGGGTTTCGACGATCGGGTGTGCCGGAGGGGTGTGTGCACATGAT
129 AGAACCTGA-CTACGGCATTAGGGTTCCGACGATCGGG-G-GCCGG-GGGGTGTGCGCACA-GAT
* *
16626950 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTAGGGAACT
189 -TGCGATGGGTGCTGGTACTT-GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTAGAGAACT
*
16627015 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGA
252 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
16627080 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTT
317 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
16627144 TTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCTGAA
382 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-CAA
* * *
16627209 AAAATTTTAAAAAATTTTGAACCGTGAAAAGTTTCAAAAATCATGAAAAATAGAAAAGGAGTCGT
446 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAAGG-GTCGT
* * *
16627274 CTTACCATGAAACTTCACGTGAAGGATTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATG
510 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
16627339 GCATTGCCACGCAGAAATATGAAGATGTGACTAAACCCACCTACCACCCTATCGTTCCACGGCTT
575 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATAGATCCACGGCTT
* * * * *
16627404 GCGCATCCCGTCTCTCTGGTCGGCGTAGTACCCGCCTGCCCGCCTGCCCGCTTGTTTCGTTGGTT
640 GCGCATCCCGTCTCTCTGGCCGGCGTAGT-CCCGCC-GCCCGCC--CGCGCTCGTTTCATCGGTT
*
16627469 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAG
701 GGCTTAGGCATAC-GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAG
16627530 CACTTGTTGG
Statistics
Matches: 1433, Mismatches: 148, Indels: 172
0.82 0.08 0.10
Matches are distributed among these distances:
859 26 0.02
860 2 0.00
861 1 0.00
864 1 0.00
866 1 0.00
867 1 0.00
870 6 0.00
871 7 0.00
872 34 0.02
873 50 0.03
874 54 0.04
875 35 0.02
876 96 0.07
877 363 0.25
878 5 0.00
879 6 0.00
883 4 0.00
884 5 0.00
885 24 0.02
886 6 0.00
887 36 0.03
888 11 0.01
889 51 0.04
890 46 0.03
891 95 0.07
892 29 0.02
893 20 0.01
894 115 0.08
895 26 0.02
896 29 0.02
897 49 0.03
898 13 0.01
899 4 0.00
900 2 0.00
901 17 0.01
902 86 0.06
903 38 0.03
904 25 0.02
905 6 0.00
906 6 0.00
907 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (865 bp):
AGCATACGAAGTTCATTCCCAGTCTAAGATCGGATTGGACTGAGGGTTGCGGCAGCACATGCTGG
GCTAGGGCATGCATCGGTGTCGCATTTTTCTTCACGAGAGCACCATCACTGGAGCATCGTCGGAG
AACCTGACTACGGCATTAGGGTTCCGACGATCGGGGGCCGGGGGGTGTGCGCACAGATTGCGATG
GGTGCTGGTACTTGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTAGAGAACTCACACCCCC
TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTAA
AAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAAGGGTCGTCTTGCCATGAA
ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATAGATCCACGGCTTGCGCATCCCGT
CTCTCTGGCCGGCGTAGTCCCGCCGCCCGCCCGCGCTCGTTTCATCGGTTGGCTTAGGCATACGA
GTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGAAGGATCAACAACATACAGA
GGGGACACCAGCCGATCGCCCGCTTGCGCACTCCCACCCCCTCCTGGCGGCTGAGCGCCCGCACG
CTCGTTTCGTGGGTTGACTT
Found at i:16628139 original size:26 final size:26
Alignment explanation
Indices: 16628103--16628155 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16628093 CCGATCCACG
*
16628103 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16628129 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16628155 G
1 G
16628156 ATCAGACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16629042 original size:26 final size:26
Alignment explanation
Indices: 16629006--16629058 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16628996 GTTGACTTAG
16629006 GCATACGGAGTTCAGTCCCAGTCTAA
1 GCATACGGAGTTCAGTCCCAGTCTAA
* *
16629032 GCATAGGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAGTCCCAGTCTAA
16629058 G
1 G
16629059 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCAGTCCCAGTCTAA
Found at i:16629848 original size:904 final size:893
Alignment explanation
Indices: 16628102--16634680 Score: 7618
Period size: 904 Copynumber: 7.4 Consensus size: 893
16628092 ACCGATCCAC
* * **
16628102 GGCATACGGAGTTCATTCTCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGA
1 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
* ** *
16628167 CCGAGGGTTGTGAAAGCACATGCTGGGCTCGGGCGTGTGCTGGTGCCGCATTTTTCTTCGTCGGG
66 CCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
* * * * * * ** *
16628232 CCACCATCACCGAAATATCATCGAAGAACCTGACCGGCGGCATTGAGGTTCCGGTGATCGAAGGG
131 GCA-CAT--GCG--ACATCACCGGAGAA-CTGA--GGCGGCATTGGGGTTCCGACGATCG-GGGG
* ** * * *
16628297 G-CCGGGGGGTGTATGCACATGATGTACGATGGGTGCTGGTACTTGG-CCTGTTTATTGGCCCCT
187 GTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT-TATATTGGCCCCC
* * *
16628360 TATCCCTCATCAAACCTTGAGAACTCTCACCCCCTTAAAGAGCCTTTGAGATTTTATAGGTTTGC
251 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGC
*
16628425 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTCTTTTCAAATGGTCACAAAATCTTGTAC
316 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * * * * *
16628490 ACTTCGAGTTTTTAGCTGAATTTTTTTTTGAATACCAAGAAAAATACAGGGATCATGTCTGCCAA
381 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* ** * *
16628555 GTTTGTGGCCAAAACTGCTTCCGAAAAAATTTTAAAAAATCGTGAACCACAAAAAGTTTTAAAAA
446 GTTTG-GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAA
* * *
16628620 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAATGCTTAAGGGACCATTA
510 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* *
16628685 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCAC
575 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
* * * * *
16628750 CTACCACTCTATCGATCCACGGCTTGCGCATCTCGTTTCTCTGGCCGACGTAGTGCCCGCCCGCC
640 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTTCCCGCCCGCC
* * * *
16628815 TGCCCGCGCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
705 CGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * *
16628880 CCAGACCGAGGGTTGC-GATAGTAGGATTGACACCACGTAG-AGGGAGACCC-AGCCGATCCCCG
770 CCAGACCGAGGGTTGCAG-TAGTAGGATCGGCAGCACGCAGAAGGG-GACCCGA-CTGATCCCCG
* * *
16628942 GCTTGCGCATCCCGCCCCTCTGTCCGACTAAGCACCCGCACGCTCGTTTCGTGGGTTGACTTA
832 GCTTGCGCATCCCGCCCCTCTG-CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* * *
16629005 GGCATACGGAGTTCAGTCCCAGTCTAAGCATAGGGAGTTCATTCCCAGTCTAAGATCGGATCGGA
1 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
* * * * * * * *
16629070 CCCAGTGTTGCAGCAGCACTTACTGGGCTCGGGCATGTACTGGTGCTGCATTTTTCTTCG-CTGG
66 CCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GG
16629134 GGCACGATCGTCGGAGCATCACCGGAGAACTTGACTGGCGGCATTGGGGTTCCGACGATCAGGGG
130 GGCAC-AT-G-C-GA-CATCACCGGAGAAC-TGA--GGCGGCATTGGGGTTCCGACGATC-GGGG
** * * * *
16629199 TTTCGGGGGGGTGTGCACACATAATGTGTGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCC
186 GGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
** * * *
16629264 TATCCCTCATCAAAATTTGAGAACCCACACCCCCTTAAAAAGCATTTGAGATTTTATAGGTTTGC
251 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGC
* * * * *
16629329 TGTCAGTAGCCATTAAAGTGTCTGAAATAGGGATACTTTTTTCAAATTGTCACAGAATCTTGTAC
316 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
*
16629394 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAGA-AAAAATACAAGGATCATGTCTACCA
381 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA-ACAAAAATACAAGGATCACGTCTACCA
* * * *
16629458 AGTTTGGGACCAAAAGTCCTTCCCAAAAAATTTTAAAAAATCCTGAACCGCAAAAGGTTTTGAAA
445 AGTTTGGG-CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAA
* * *
16629523 ATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCAGGTGAAGGCTTAGGGGACCATT
509 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
** *
16629588 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATG-ACCTTAAACCC
574 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC-TAAACCC
* * * *
16629652 ACCTGCCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTAGCCGGCGTAGTTCCCGCCCC
638 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTTCCCGCCCG
* ** * * **
16629717 CCCGCCCACCCGCTCGTTTCATCGGTTGGCTTAGGCATACAAAGTTAATTCCCAATCTAAGATTG
703 CCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
** * * * * * *
16629782 GACTGGACCGAGGGCTGCGGTAGCAGGATCGGTAGCACGCAGATGGGGACCTGACTGATCCCCGG
768 GACCAGACCGAGGGTTGCAGTAGTAGGATCGGCAGCACGCAGAAGGGGACCCGACTGATCCCCGG
* * * * * * * * *
16629847 CTTGGGCATCCCGCCCTTCTGGCCTGCTGAGCGCCTGCAAGCTCATTTTGTGGCTTGACTTT
833 CTTGCGCATCCCGCCCCTCT-GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* * *
16629909 GGCATACGGAGTTCATTCCCAGTCTAAGCAT-CAGAGTTAATTCCCAGTCTATGATCGGACCGGA
1 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
* *
16629973 CCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTG-CGCATTTTTCTTCGCCAGG
66 CCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
16630037 G--CA--C--CATCACC---G----GA--CGGCATTGGGGTTCC-AGCGATCGCGGGGGTCGGGG
131 GCACATGCGACATCACCGGAGAACTGAGGCGGCATTGGGGTTCCGA-CGATCG-GGGGGTCGGGG
* * *
16630086 GGGTGTGCGCATATAATGTGCAATGGGTGCTGGTA-------C-----TT-G-------------
194 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
*
16630125 A-C-AA---C----A--CACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGTCAGTA
259 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTA
* * *
16630179 GCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTTCACTTCAAG
324 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * *
16630244 TTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTGCCATGTTTGGGG
389 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGG
* * * ** *
16630309 CCAAAA-TGCCTTCC-AAAAGAATTTAAAAAAATCCCGAATCGTAAAAAGTTTCAAAAATAGTGA
453 CCAAAACT-CCTTCCGAAAA-AATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGA
*
16630372 AAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
516 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* *
16630437 TTTACAAGCCATAAAAATGGAATTGGCATGCAGAAATATGAAGATGTGCCTAAACCAACCTACCA
581 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
*
16630502 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAG-T-------GCCCGCCCA
646 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTTCCCGCCCGCCCGCCCA
* * * * * *
16630559 CCCGCTCATTACGTC-GTTGCCTTAGGCATACAGAGTTCATTCCAAGTCTAAGATCAGACCAAAC
711 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
** * * * * **
16630623 CGAGGGTTGCAACAGTGGGATCGGTAGCATGCAGAAGGGGACCCGA-TCGATCCCCAGCTTAAGC
776 CGAGGGTTGCAGTAGTAGGATCGGCAGCACGCAGAAGGGGACCCGACT-GATCCCCGGCTTGCGC
** * * * * *
16630687 ATCCCGATCGTCTGGC-GCTGAGTGCCTGCACGCTTGTTTCGTGGGTTGACTTA
840 ATCCCGCCCCTCTGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* * * * **
16630740 GGCATACGAAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTTCCAGTCTATGATCGGACCAAA
1 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
* * * * ** * *
16630805 CCGACGGTTACGGTAGTAGATTATGGGCCCAGGG-ATGTGCTGGTGCCGCATTTTTCTTCGTTGG
66 CCGAGGGTTGCGGTAGCACATGCTGGGCTC-GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGG
** *
16630869 GGCACCATCGTCAGAGCATCACTAGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGG
130 GGCA-CAT-G-C-GA-CATCACCGGAGAA-CTGA--GGCGGCATTGGGGTTCCGACGATCGGGGG
* * * * * *
16630934 GGCTGGGGGGTGTGCGCACAAGATGTGCGATTGGTGCTGGTACTTGGCACTTATATTGGTCCCCT
187 GTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
*
16630999 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTGTAGGTTTGCT
252 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCT
* *
16631064 GCCAGTAGCCATTAAAGTGTTTGAAATGGGGACCCTTTTTTCAAATGGTCACAAAATCTTGTACA
317 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * * *
16631129 CCTCGAGTTTTTAGCTGAATTTTTTT-TGGATGCCAATAAAAATACAAGGATCAAGTCTACCAAG
382 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * * * *
16631193 CTTGGGGCAAAAAC-CCTTTCTGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAA
447 -TTTGGGCCAAAACTCC-TTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAA
*
16631257 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAGGTGAAGGCTTAAGGGACCATTG
510 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
** * *
16631322 TATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTCCCTAAACCCAC
575 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
* * *
16631387 CTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTAGCCGGCGTAG-T---GCCCACC
640 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTTCCCGCCCGCC
* * * * **
16631448 CACCCACCTGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTAATTCCCAGTCTAAGATTGGA
705 CGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* ** * * * *
16631513 CTAGATTGAGGGTTGCAGTAGTAGGATCGGTAACACGCAGAGGGGGACCTGA-TCGATCCCCGGC
770 CCAGACCGAGGGTTGCAGTAGTAGGATCGGCAGCACGCAGAAGGGGACCCGACT-GATCCCCGGC
* * * * * *
16631577 TTGTGCATCTCGCCCCTCTGGTCGGCTTAGTGCCCGCACGCTCGTTTCGCGGGTTGACTTA
834 TTGCGCATCCCGCCCCTCT-GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* *
16631638 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGCTAATTCCCAGTCTAAGATCGGACCGGA
1 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
* * *
16631703 CCGAGGGTTGCGGCAGCATATGCTGGGCTCGGGCAAGTGCTGGTGCCGCATTTTTCTTCGTCGGG
66 CCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
* * *
16631768 G--CA--C--CATCGCC---G----GA--CGGCATTGGGGTTCC-AGCGATCGGGGGGTTGGGGA
131 GCACATGCGACATCACCGGAGAACTGAGGCGGCATTGGGGTTCCGA-CGATCGGGGGGTCGGGGG
*
16631817 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTGTCCCTCA
195 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* * *
16631882 TCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGCTTTGCTGCCAGTAG
260 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAG
*
16631947 CCATTAAAGTGTCTGAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTTCACTTCGAG
325 CCATTAAAGTGTCTG-AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * * * *
16632012 TTTTTAGCTGAATTTTTTTGTGCAAGACAACAAAAATACAAGGATCACGTCTCCCATGTTTCTGG
389 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGG
* * * * ** *
16632077 CAAAAACGCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATAGTGAAA
453 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAA
* ** * * *
16632142 AATAAAAAATAAGTCGCCTTCCCTTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
518 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* *
16632207 TACAAGCCATAAAAATGGAATTGGCATGCAGAAATATGAAGATGTGCCTAAACCAACCTACCACC
583 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * * * *
16632272 CTATCGATACACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCTGCCCG-TCGCC
648 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTTCCCGCCCGCCCGCCCACC
* * *
16632336 CGCTCGTTTCATCGGTTGCCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTG
713 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCG
* * * **
16632401 AGGGTTGCAGTAGTGGGATTGGCAGCATGCAGAAGGGGACCCGA-TCGATCCCCGGCTTAAGCAT
778 AGGGTTGCAGTAGTAGGATCGGCAGCACGCAGAAGGGGACCCGACT-GATCCCCGGCTTGCGCAT
* * * * *
16632465 CCCGCCCCTCTGGCGGTTGAGCGCCCGTACGCTTGTTTCGTGGGTTGACTTT
842 CCCGCCCCTCTGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* * * **
16632517 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTTCCAGTCTATGATCGAACCAAA
1 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
* * * * ** * *
16632582 TCGACGGTTGCGGTAGTAGATTTTGGGCTCAGGCATGTGCTGGTGCCGCATTTCTCTTCGTCGGG
66 CCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
***
16632647 GCACCATCGCCGGAGCATCGTTGGAGAACTTGATCGGCGGCATTGGGGTTCCGACGATCGGGGGG
131 GCA-CAT-G-C-GA-CATCACCGGAGAAC-TGA--GGCGGCATTGGGGTTCCGACGATCGGGGGG
* * * *
16632712 GCCGGGGGGTGTGCACACATGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
188 TCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
16632777 TCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
253 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTG
* *
16632842 CCAGTAGCAATTAAAGTGTCTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
318 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * *
16632907 TTCGAGTTTTTACCTGAATTTTTTTGTGCGA-GCCAACAAAGATACAAGGATCACGTCTACCAGG
383 TTCGAGTTTTTAGCTGAATTTTTTTGTGC-ATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * * *
16632971 TTTAGGACCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTTGAAAGT
447 TTT-GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAAT
* *
16633036 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAGGGCTTAAGGGACCATTGT
511 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
16633101 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
576 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
* * *
16633166 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCGGAGTAGTT----CCCGCCT
641 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTTCCCGCCCGCCC
* * * * *
16633227 G----CCCGCTCGTTTTGTCAGTTGGCTTAGGCATACGGGGTTCATTCCTAGTCTAAGATCAGAT
706 GCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * * * * ** *
16633288 CAGACCGAGGGTTACGGTAGCATGATCGGCAGCGCACAGAGGGGGACCCGACCAATCCTCGGCTT
771 CAGACCGAGGGTTGCAGTAGTAGGATCGGCAGCACGCAGAAGGGGACCCGACTGATCCCCGGCTT
** * * * *
16633353 GCGCATCCCGCCCCTCTAGCCGATTGAACGCCCGCACACTCGTTTTGTGAGTTGACTTA
836 GCGCATCCCGCCCCTCT-GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* * * ** * *
16633412 GGCATATGTAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTATCAGTCTAAGATTGGATCGGA
1 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
* * * * ** * *
16633477 TCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATTTGCTGGTGCCAAATTTTTCTTTGCCGGG
66 CCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
* * * *
16633542 G--CA--C--CATCACCGGATAACCTGGCCGGTGGCATTGGGGTTCCGACGATCGGGGGTGCCGG
131 GCACATGCGACATCACCGGAGAA-CT-G-AGGCGGCATTGGGGTTCCGACGATCGGGGG-GTCGG
* *
16633601 GGGCGGTGTGCGCACATGATGTGCGATGGGTGCTTGTACTTGGCCCTTATATTGG-CCCATATCC
192 GGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* *
16633665 CTCATCAAACCTCGAGAACCCACA-CCCCTTAAAGAGCATTTGAGATTTTATAGTTTTGCTGCCA
256 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCA
16633729 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
321 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* *
16633794 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTCG
386 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT-T
* * * *
16633859 GGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAG-TTTGAAAATTAGT
450 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAA-TCGT
16633923 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
514 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* * * * *
16633988 AATTTACAAGCCATAAATATTGAATTGGCATGCAGAAATATGAAGATGTGCCAAAACCAACCTAC
579 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * * * *
16634053 CACCCTATTGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCAGGCCGCC
644 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTTCCCGCCCGCCCGCC
* * * * * * *
16634118 CGCTCGCTTGTTTCGTCGGTTGGCTTAGGCCTATGGAGTTCATTCCCAGTGTAAGAT-AGAACCG
709 CACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCA
* * * * * * *
16634182 GATCGAGGGTTGCTGTAGTAGGATCGGCGGCACGCAAAATGGGACCTGACCGATCCCCGGCTTGC
773 GACCGAGGGTTGCAGTAGTAGGATCGGCAGCACGCAGAAGGGGACCCGACTGATCCCCGGCTTGC
* * * * * * * *
16634247 GCATCCTGTCCCTCTGGCCGGCTGAGCGCCTGTATGCTCGTTTCGTGGCTTGGCATA
838 GCATCCCGCCCCTCT-GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* * ** * *
16634304 GGCATACTGAGTTCATTCCCAGTCTAAGCTTATAGAGTTCATTCCCAGTCTAAGATCAGATCGGA
1 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
* * * * * * * * *
16634369 CTGACGGTTACGGTAGCACATGCTGGGCTCGAGCAAGTCCTAGTGTCGCATTTTTCTTCATCGGG
66 CCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
* * * *
16634434 GCACAT------TC-TC---G----GA--CGGTATTGGGGTTCCGACGATTGGGGGGGTCAGGAG
131 GCACATGCGACATCACCGGAGAACTGAGGCGGCATTGGGGTTCCGACGA-TCGGGGGGTC-GGGG
* * *
16634483 GGGTGTGCGGACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTC
194 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
*
16634548 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
259 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTA
** * * * *
16634613 GCCACAAAAGTGTTTAAAATGGGGACACTTTTTTCAAATAGTCACAAAATCTTGTACACTTTGAG
324 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
16634678 TTT
389 TTT
16634681 GGGGCCAAAA
Statistics
Matches: 4860, Mismatches: 655, Indels: 344
0.83 0.11 0.06
Matches are distributed among these distances:
831 60 0.01
832 64 0.01
833 119 0.02
834 20 0.00
836 2 0.00
840 1 0.00
841 7 0.00
842 373 0.08
843 5 0.00
844 7 0.00
847 1 0.00
851 2 0.00
852 3 0.00
853 1 0.00
855 39 0.01
856 21 0.00
857 1 0.00
862 1 0.00
866 1 0.00
867 4 0.00
868 1 0.00
874 1 0.00
875 164 0.03
876 67 0.01
877 247 0.05
878 4 0.00
879 277 0.06
880 167 0.03
881 110 0.02
882 4 0.00
883 12 0.00
884 414 0.09
885 38 0.01
886 50 0.01
887 5 0.00
888 7 0.00
890 8 0.00
891 260 0.05
892 380 0.08
893 1 0.00
894 120 0.02
895 159 0.03
896 102 0.02
897 11 0.00
898 144 0.03
899 1 0.00
900 1 0.00
901 319 0.07
902 188 0.04
903 224 0.05
904 633 0.13
905 9 0.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (893 bp):
GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
CCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
GCACATGCGACATCACCGGAGAACTGAGGCGGCATTGGGGTTCCGACGATCGGGGGGTCGGGGGG
GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGC
CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCA
AAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAAT
AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTTCCCGCCCGCCCGCCCACCCGC
TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGG
GTTGCAGTAGTAGGATCGGCAGCACGCAGAAGGGGACCCGACTGATCCCCGGCTTGCGCATCCCG
CCCCTCTGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
Found at i:16630777 original size:26 final size:26
Alignment explanation
Indices: 16630741--16630791 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
16630731 GTTGACTTAG
16630741 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
16630767 GCATACGAAGTTCATTTCCAGTCTA
1 GCATACGAAGTTCATTCCCAGTCTA
16630792 TGATCGGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16631681 original size:26 final size:26
Alignment explanation
Indices: 16631639--16631691 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16631629 GTTGACTTAG
* *
16631639 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTAATTCCCAGTCTAA
16631665 GCATACGGAGCTAATTCCCAGTCTAA
1 GCATACGGAGCTAATTCCCAGTCTAA
16631691 G
1 G
16631692 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTAATTCCCAGTCTAA
Found at i:16632547 original size:26 final size:26
Alignment explanation
Indices: 16632518--16632568 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
16632508 GTTGACTTTG
16632518 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16632544 GCATACGGAGTTCATTTCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
16632569 TGATCGAACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16633450 original size:26 final size:26
Alignment explanation
Indices: 16633413--16633465 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16633403 GTTGACTTAG
* *
16633413 GCATATGTAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTACCAGTCTAA
*
16633439 GCATATGGAGTTCATTATCAGTCTAA
1 GCATATGGAGTTCATTACCAGTCTAA
16633465 G
1 G
16633466 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (26 bp):
GCATATGGAGTTCATTACCAGTCTAA
Found at i:16635159 original size:26 final size:26
Alignment explanation
Indices: 16635123--16635173 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
16635113 GTTGACTTAG
*
16635123 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
16635149 GCATACGGAGTTCAATCCCAGTCTA
1 GCATACGGAGTTCAATCCCAGTCTA
16635174 TGATCGGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAGTCTAA
Found at i:16636638 original size:890 final size:874
Alignment explanation
Indices: 16634676--16637487 Score: 3582
Period size: 890 Copynumber: 3.2 Consensus size: 874
16634666 GTACACTTTG
* *
16634676 AGTTTGGGGCCAAAACA-CCTTTCAAAAAAATTTTAAAAAATCCCGAACCGCAGAAAGTTTCAAA
1 AGTTTGGGGCCAAAA-ATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAA
* *
16634740 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGACGGCTTAAGGGACCAT
65 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* *
16634805 TGTATGAATTTACAAGCCATAAAAATTGCATTGGCATGCAGAAATGTGAAGATGTGCCTAAACCC
130 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
* *
16634870 ACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCG
195 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG
* * *
16634935 CCTACCCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGAACC
260 CCTGCCCGCTCGTTTCGTCGGTTGGTTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGAACC
* * * * *
16635000 AGACCGAGGGTTGCAGCAACGGGATGGGTAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTA
325 A-ACCGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTG
* *
16635065 CGCATCCTGCCCCTCTAG-CGGCTGAACGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATAC
389 CGCATCCTGCCCCTCTGGCCGGCTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
*
16635129 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAATCCCAGTCT-ATGATCGGACCAGACCGATG
454 -GAGTTCATTCCCAGTCTAAGCATA--GAGTTC-AT---A-TCTGA-GATC-GA-CAGACCGAGG
* * * *
16635193 GTTGCGACAGCACATTCTGGGC-TCAGGCATGTACTGGTGTCGAATTTTTCTTCGTCGGGGCACC
508 GTTGCGACAGCACATGCTGGGCTTGA-GCATGTGCTGGTGCCGAATTTTTCTTCGTCGGGGCA--
* * *
16635257 GTCGCTAGAGCATCACCGGAGAACCTAACCGGTGGCATTGGGGTTCCGGCGATCAGGGGGCC-CG
570 ----C-----CATCGCCGGAGAACCT-ACCGGTGGCATTGGGGTTCCGGCGATCGGGGGGCCGGG
* *
16635321 GGGGTGTGCAG-ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATACC
625 GGGGTGTGC-GCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* *
16635384 TTATCAAACCTTGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAAGTTTGCTAG-CA
689 TCATCAAACCTTGAGAACTCACACCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCT-GCCA
16635448 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTCTCAAATGGTCACAAAATCTTGTACACTTC
752 GTAGCCATTAAAGTGTC-GAAATGGGGACACTTTTCTCAAATGGTCACAAAATCTTGTACACTTC
* * *
16635513 GAGTTTTTAGCTGAATTTTTTTATGCGTGCCAAAAAAAATACAAGGATCACATCTACCT
816 GAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCA
* * * ** * * *
16635572 AGTTTGGGACCAAAACTTCTTCTGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTAAAA
1 AGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAA
*
16635637 ATCATGAAAAACAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
66 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* *
16635702 GTATGAATTTACAAGCCATAAAAATGGCATTAGCATGCATAAATATGAAGATGTGCCTAAACCCA
131 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
* * * *
16635767 CCTACCACCCTATCGATCCACGGCTTACGCGTCCCGTCTCTCTGGCCGGCGTAGTTCTCGCCCGC
196 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC
* * * * *
16635832 CCGCCCGCTCGTTTCGTCAGTTGGTTTAGGCATAC-GAAATTCATTCCTAGTCTAAGA-TCAGAC
261 CTGCCCGCTCGTTTCGTCGGTTGGTTTAGGCATACAG-AGTTCATTCCCAGTCTAAGATTGA-AC
* * ** **
16635895 CGAACCGAGGGTTAC-GACAGCAGGATCGACAGTGCGCAGAGGGGGACCCGACCGATCCCCGGCT
324 C-AACCGAGGGTTGCAG-CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCT
* * * *
16635959 TGCGCATCCTGCCCCTTTGGCCGACTGATCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCAT
387 TGCGCATCCTGCCCCTCTGGCCGGCTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
*
16636024 ACGTAGTTCATTCCCAATCTAAGCATATTGAGTTCATTATAAATCTGAGATCAGATCAGACCGAG
452 ACG-AGTTCATTCCCAGTCTAAGCATA--GAGTTC---AT--ATCTGAGATC-GA-CAGACCGAG
* * * *
16636089 GGTTGCGGCAGCACATGCTGGGCTTGAGCATTTGCTGGTGCCAAATTTTTCTTTGTCGGGGCACC
507 GGTTGCGACAGCACATGCTGGGCTTGAGCATGTGCTGGTGCCGAATTTTTCTTCGTCGGGGCACC
* * **
16636154 ATCGCCGGATAACCTGGCCGGTGGCATTGGGGTTCCGAAGATCGGGGGTGCCGGGGGGGATGTGC
572 ATCGCCGGAGAACCT-ACCGGTGGCATTGGGGTTCCGGCGATCGGGGG-GCCGGGGGGG-TGTGC
16636219 GCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
634 GCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * *
16636284 TCGAGAACCCACACCCCTTAAAGAGCATTCGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
699 TTGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* * *
16636349 GTGTCGAAAATGGGGACACTTTTGTGAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCT
764 GTGTCG-AAATGGGGACACTTTTCTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* *
16636414 GAATTTTTTTGTGCATGCCAAAAAAAAATACAAGGATCCCGTCTACCA
828 GAATTTTTTTATGCATGCC-AAAAAAAATACAAGGATCACGTCTACCA
* **
16636462 AGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTTGAAA
1 AGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAA
* *
16636527 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTAAAGGCTTAAGGGACCATT
66 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* ** ** *
16636592 GTATGAATTTACAGGCCATAAAAATGGTGTTGGCACACAGAAATATGAAGATATGCCTAAACCCA
131 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
* * * ** *
16636657 CCTACCACCTTATCGATCCACGACTTGCGCATCCCGTCTCTCTAGCCGGTATAGTGCCCACCCGC
196 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC
16636722 CTGCCCGCTCGTTTCGTCGGTTGGCTTT-GGCATACAGAGTTCATTCCCAGTCTAAGATTGAACC
261 CTGCCCGCTCGTTTCGTCGGTTGG-TTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGAACC
* * * *
16636786 AAACTGAAGGTTGCAGCAGCAGGATCGGCAGCACGTAGAAGGGGACCCGGTCGATCCCCGGCTTG
325 -AACCGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTG
* * * *
16636851 TGCAT-CTCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATA
389 CGCATCCT-GCCCCTCTGGCCGGCTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
*
16636915 TAGAGTTCATTCCCAGTCTAAG-ATCAGA---C----C-G-GA-C--C--A---AGGGTTGCGAC
453 -CGAGTTCATTCCCAGTCTAAGCAT-AGAGTTCATATCTGAGATCGACAGACCGAGGGTTGCGAC
* * * * * * *
16636962 AGCACATGCTGGGCTCGGGCATGTGCTGCTGCCGCATTTCTCTTCGCCGAGGCACCATCGTTGGA
516 AGCACATGCTGGGCTTGAGCATGTGCTGGTGCCGAATTTTTCTTCGTCGGGGCACCATC------
* * * *
16637027 GCATCGTTGGAGAACCTATCGGTGGCATTGGGGTTCCGGCGACCGGGGGGTCGGGGGGGTGTGTG
575 GC--C---GGAGAACCTACCGGTGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCG
* *
16637092 CACATGATGTGCGATTTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
635 CACATGATGTGC-AATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* *
16637157 TTGAGGACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCATTAA
699 TTGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* *
16637222 AGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
763 AGTGTC-GAAATGGGGACACTTTTCTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
16637287 TGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCA
827 TGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCA
* * * * ** *
16637335 AATTTGGGGCCAGAACTCATTCTGAAAAAATTTTAAAAAATCCCGAACTGCAAAAAGTTTCAAAA
1 AGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAA
* * *
16637400 ATCATGAAAAATAAAAAAC-ATGTCATCTTGCCATGAAACTTCACCTGAAGGCTTAAGGGACCAT
66 ATCATGAAAAATAGAAAACGA-GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
16637464 TGTATGAATTTACAAGCCATAAAA
130 TGTATGAATTTACAAGCCATAAAA
16637488 TTTGCCGTAT
Statistics
Matches: 1684, Mismatches: 191, Indels: 105
0.85 0.10 0.05
Matches are distributed among these distances:
864 59 0.04
867 1 0.00
869 1 0.00
870 2 0.00
872 19 0.01
873 232 0.14
874 157 0.09
875 9 0.01
876 1 0.00
885 1 0.00
886 42 0.02
887 3 0.00
888 10 0.01
889 171 0.10
890 463 0.27
891 9 0.01
895 4 0.00
896 354 0.21
897 140 0.08
898 4 0.00
899 2 0.00
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (874 bp):
AGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAA
ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC
CTGCCCGCTCGTTTCGTCGGTTGGTTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGAACCA
ACCGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCG
CATCCTGCCCCTCTGGCCGGCTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGA
GTTCATTCCCAGTCTAAGCATAGAGTTCATATCTGAGATCGACAGACCGAGGGTTGCGACAGCAC
ATGCTGGGCTTGAGCATGTGCTGGTGCCGAATTTTTCTTCGTCGGGGCACCATCGCCGGAGAACC
TACCGGTGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCAATG
GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCC
TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCGAAATGGGGACA
CTTTTCTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGC
CAAAAAAAATACAAGGATCACGTCTACCA
Found at i:16637968 original size:489 final size:489
Alignment explanation
Indices: 16637050--16637976 Score: 1527
Period size: 489 Copynumber: 1.9 Consensus size: 489
16637040 ACCTATCGGT
* * * ** * * *
16637050 GGCATTGGGGTTCCGGCGACCGGGGGGTCGGGGGGGTGTGTGCACATGATGTGCGATTTGGTGCT
1 GGCATTGGGGTTCCGACGACCGGGGAGCCGACGGGGTGTGCGCACATGACGTGCGATTGGGTGCT
*
16637115 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGGACTCACACCCCCTTAAA
66 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAA
*
16637180 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGTGTCTTAAATGGGGACACTTT
131 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGTGTCTGAAATGGGGACACTTT
*
16637245 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAA
196 TTTCAAATGGGCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAA
* * ** * *
16637310 AAAAATACAAGGATCACGTCTACCAAATTTGGGGCCAGAACTCATTCTGAAAAAATTTTAAAAAA
261 AAAAATACAAGGATCACGTCTACCAAAGTTGGGGCCAAAAAACATTCTCAAAAAATTTAAAAAAA
* *
16637375 TCCCGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACATGTCATCTTGCCATGAAACT
326 TCCCGAACCGCAAAAAGTTTCAAAAATCATAAAAAATAAAAAACATGTCATCTTGCCATGAAACT
*
16637440 TCACCTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAATTTGCCGTATTTTTCTT
391 TCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAATTTGCCGTATTTTTCTT
16637505 CTTCGTGGCACCATCACCAGAGAACCTGACCGAC
456 CTTCGTGGCACCATCACCAGAGAACCTGACCGAC
*
16637539 GGCATTGGGGTTCCGACGATCGAGGGAGCCGACGGGGTGTGCGCACATGACGTGCGA-TGGGTGC
1 GGCATTGGGGTTCCGACGACCG-GGGAGCCGACGGGGTGTGCGCACATGACGTGCGATTGGGTGC
*
16637603 TGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAA
65 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAA
* *
16637668 AGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
130 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGTGTCTGAAATGGGGACACTT
*
16637733 TTTTCAAATGGGCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
195 TTTTCAAATGGGCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAA
* * *
16637798 AAAAAATACAAGGATCATGTCTACCAAGGTTGGGGCCAAAAAACCTTC-CAAAAGAATTTAAAAA
260 AAAAAATACAAGGATCACGTCTACCAAAGTTGGGGCCAAAAAACATTCTCAAAA-AATTTAAAAA
* *
16637862 AATCCCGAACCGCAAAAAGTTTCAAAAATCATAAAAAATAAAAAATGA-GTCGTCTTGCCATGAA
324 AATCCCGAACCGCAAAAAGTTTCAAAAATCATAAAAAATAAAAAA-CATGTCATCTTGCCATGAA
*
16637926 ACTTCACATGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAA
388 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
16637977 ATGGCATTGG
Statistics
Matches: 404, Mismatches: 31, Indels: 6
0.92 0.07 0.01
Matches are distributed among these distances:
488 4 0.01
489 371 0.92
490 29 0.07
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (489 bp):
GGCATTGGGGTTCCGACGACCGGGGAGCCGACGGGGTGTGCGCACATGACGTGCGATTGGGTGCT
GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAA
GAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGTGTCTGAAATGGGGACACTTT
TTTCAAATGGGCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAA
AAAAATACAAGGATCACGTCTACCAAAGTTGGGGCCAAAAAACATTCTCAAAAAATTTAAAAAAA
TCCCGAACCGCAAAAAGTTTCAAAAATCATAAAAAATAAAAAACATGTCATCTTGCCATGAAACT
TCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAATTTGCCGTATTTTTCTT
CTTCGTGGCACCATCACCAGAGAACCTGACCGAC
Found at i:16638325 original size:26 final size:27
Alignment explanation
Indices: 16638275--16638326 Score: 79
Period size: 26 Copynumber: 1.9 Consensus size: 27
16638265 GGTTGACTTG
*
16638275 GCATACGGAGCTTTCATTCCTAGTCTAA
1 GCATACGGAGC-TTCATTCCCAGTCTAA
16638303 GCATACGGAG-TTCATTCCCAGTCT
1 GCATACGGAGCTTCATTCCCAGTCT
16638327 TAAGATGCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 13 0.57
28 10 0.43
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.31
Consensus pattern (27 bp):
GCATACGGAGCTTCATTCCCAGTCTAA
Found at i:16640813 original size:715 final size:711
Alignment explanation
Indices: 16638303--16641198 Score: 3894
Period size: 715 Copynumber: 4.1 Consensus size: 711
16638293 CCTAGTCTAA
* * ** *
16638303 GCATACGGAGTTCATTCCCAGTCTTAAGATGCAGACCA-GACTG-GGGTTGC-AGGTGGACATGC
1 GCATACGGAGTTCATTCCCAGTC-TAAGAT-CAGA-CAGGACCGAGGGTTACGA-CAGCACATGC
* * *
16638365 TGGGCTCGTGCATGTGCTGGCTGCCGCATTTTTCTTCG-TGGGGCACCATCACAGGCATCGTCGG
62 TGGGCTCGGGCATGTGCTGG-TGCCGCATTTTTCTTCGCCGGGGCACCATCAC--GCATCGCCGG
* * * * **
16638429 AGAACTTTGACCGACGGCATTGGTGGTTCCCGCACGATC-GGGGACGTGTTTAGGTGTGCGCCAT
124 AGAAC-CTAACCGACGGCATTGG-GGTT-CCG-ACGATCGGGGGGCGCG--GGGGTGTGCG-CA-
* * *
16638493 CATTGATGTGTGATGGGTGCTTGT-CTTGGCCC-TATATTGGCCGCCTATCCCTCATTC-AA-CT
181 CA-TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA-TCAAACCT
* * *
16638554 -GAGAACTCACA--CCCTTATAGCAGGCATTTGAGATTTTATAAG-TTGCTGCCAGTAGCCATTA
244 CGAGAACTCACACCCCCTTAAAG-A-GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* * *
16638615 AAGTGTCTGAAATGGGG-CACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTTGAGTTTTTAG
307 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAC
* * * * *
16638679 CTTAATTTTGTTGTGCATGCCAACAAAAATAGAACGATCACGTCTACCAAGTTTGGGGCCAAAAC
372 CTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* * *** *
16638744 TCCTTCCAAAAAAAGTTTAAAAAATTTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAG
437 TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAA
*
16638809 AACGAGTCGTCTTGCCATGAAACTTCACGTGCAGGCTTAAGGGACCATTGTATGAATTTACAAGC
502 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* * ** *
16638874 CATAAAAATGGCATTGGCATGCAGAAATATGATTATGTGCCTAAACCC-CCTACTACCCTATCGA
567 CATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * *
16638938 TCCACGACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCC-TCC-TGCCTGCTCGTTT
632 TCAACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTACCTGCTCGTTT
16639001 CGTCGGTTGGCTTAG
697 CGTCGGTTGGCTTAG
* *
16639016 GCATACGGAGTTCATTCCCAGTCTAAGATC-GATCA-GAACGAGGGTTGC-AGCAGCACATGCTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CAGGACCGAGGGTTACGA-CAGCACATGCTG
* *
16639078 GGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGCCGGGG------CAC-CATCGCCTGAGAAC
64 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCACGCATCGCCGGAGAAC
***
16639136 CTAACCGGTTGCATTGGGGTTCCGACGATCGGGGGG-GCTGGGGGGTGTGCGCACATGATGTGCG
129 CTAACCGACGGCATTGGGGTTCCGACGATCGGGGGGCGC--GGGGGTGTGCGCACATGATGTGCG
* * * *
16639200 ATGGGTGCTGGTATTTGGCCCTAATATTGGCCCCGTATCCCTCATCAAACCTCAAGAACTCACAC
192 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
16639265 CCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
257 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
16639330 GGACACTTTTTTCAAATGGTCCCAAAATCTTGTACACTTCGAGTTTTTCCCTGAATTTTTTTGTG
322 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTTTTGTG
* *
16639395 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTAGGGGTCAAAACTCCTTCCCAAAAAA
387 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT-GGGGCCAAAACTCCTTCCGAAAAAA
* * * * *
16639460 TTTTACAAAATCCCGAACCGTAAAAACTTTTAAAAATTATGAAAAATAGAAAATGAGTCGTCTTG
451 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * **
16639525 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCAGAAAAATTTCAT
516 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
16639590 TGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGATTGCGC
581 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACGGCTTGCGC
* * * * *
16639655 ATGCCGTCTCTCTGGCCGACGTATTGCCCGCCCGCCAG--CCTGC-CGTTTCGTCGGTTCGATTA
646 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTACCTGCTCGTTTCGTCGGTTGGCTTA
16639717 G
711 G
* * * * *
16639718 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATACTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGGACCGAGGGTTACGACAGCACATGCTGGG
*
16639783 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCC-GGG-----TCAC-CATCGCCGGAGAACCT
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCACGCATCGCCGGAGAACCT
* * * *
16639841 AATCGACGGCATTGGGGTTCCGACAATCGGGGGCGTCGGGGGGGGTGTGCGCACATTATGTGCGA
131 AACCGACGGCATTGGGGTTCCGACGATCGGGGG-G-C-GCGGGGGTGTGCGCACATGATGTGCGA
* *
16639906 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAACCCTCATCAAACCTCGAGAACTCAGACC
193 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * *
16639971 CCCTTAAAGAGCATCTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAATGTCTGAAATGGG
258 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
16640036 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATGTTTTTGTGC
323 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTTTTGTGC
* * *
16640101 ATGCCAATAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCCTCCGAAAAAATT
388 ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * * *
16640166 TTAAAACATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTCCC
453 TTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* * *
16640231 ATAAAACTTCATGTGAAGGCTTAAGGGACCTTTGTATGAATTTACAAGCCATAAAAATGGCATTG
518 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* *
16640296 TCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCAACGGCTTGCGCAT
583 GCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACGGCTTGCGCAT
* * *
16640361 CCCGTCACTCTGGCCGACGTAGTGCCCGCCCGCCCGTCCACCCGCTCGTTTCGTCGGTTGGCTTT
648 CCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGT--ACCTGCTCGTTTCGTCGGTTGGCTTA
16640426 G
711 G
*
16640427 GCATATGGAGTTCATTCCCAGTCTAAGATC-GACAGGACCGAGGGTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGGACCGAGGGTTACGACAGCACATGCTGGG
* * *
16640491 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCACCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCA-C---GCATCGCCGGAGA
*
16640556 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGC-CGGGGGTGTGCGCACATGATGTGCG
127 ACCTAACCGACGGCATTGGGGTTCCGACGATCGGGGGGCGCGGGGGTGTGCGCACATGATGTGCG
* * *
16640620 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATGCCTCATCAAACCTTGAGAACTCAAAC
192 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
16640685 CCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCACTAGCTATTAAAGTGTCTGAAATGG
257 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
16640750 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
322 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTTTTGTG
* * * *
16640815 CATGCAAAAAAAAATATAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCATTCCGAAAAAAT
387 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* *
16640880 TTTAAAAAAATCCCGAACCGTAAAAAGTTTAAAAAATCATGAAAAATACAAAACGAGTCGTCTTG
452 TTT-AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
16640945 CCATGAAACTTCACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
516 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* **
16641010 TGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACTTTATCGAT-ACACGGCTTGCG
581 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCA-ACGGCTTGCG
* * * * * *
16641074 CTTCCCATCTCTCTGGCCGGCGTAGTGCTCGCCCGCCCGTCAGCCTACTCGTTTTGTCGGTTGGC
645 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGT-A-CCTGCTCGTTTCGTCGGTTGGC
16641139 TTAG
708 TTAG
* * ** *
16641143 GCATACGGAGTTCATTCCCAATCAAAGATCAGATTGGACCGAGGGTTACGGCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGGACCGAGGGTTACGACAGCA
16641199 AGATTGGCAG
Statistics
Matches: 1939, Mismatches: 198, Indels: 88
0.87 0.09 0.04
Matches are distributed among these distances:
695 19 0.01
696 11 0.01
697 23 0.01
698 17 0.01
699 35 0.02
700 42 0.02
701 111 0.06
702 232 0.12
703 166 0.09
704 231 0.12
705 245 0.13
707 1 0.00
708 66 0.03
709 48 0.02
710 23 0.01
711 40 0.02
712 6 0.00
713 23 0.01
714 3 0.00
715 271 0.14
716 257 0.13
717 23 0.01
718 1 0.00
719 45 0.02
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (711 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGGACCGAGGGTTACGACAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCACGCATCGCCGGAGAACCT
AACCGACGGCATTGGGGTTCCGACGATCGGGGGGCGCGGGGGTGTGCGCACATGATGTGCGATGG
GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTTTTGTGCATG
CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
AAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
CGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACGGCTTGCGCATCCC
GTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTACCTGCTCGTTTCGTCGGTTGGCTTAG
Found at i:16643525 original size:887 final size:885
Alignment explanation
Indices: 16641301--16645635 Score: 5360
Period size: 905 Copynumber: 4.8 Consensus size: 885
16641291 ATTGACTTAG
* * * * * *
16641301 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGTAGCACATGCTGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * **
16641366 CTTGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCCAGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCAGAGCATCACCGGAGA
*
16641431 ACCTGACCGGCGGCATTGGGGTTCCG-TCGATCGGGGGGGCCGGGGGGTGTGCACACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGAT-GATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
16641495 CGATGGGTGATGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCGC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
16641560 ACCCCCTAAAAGAGCATGTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
16641625 GGGGACACTTTTTTCGAATGATCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATGTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
16641690 TGCATGCCAACAAAAATACAAGGATCGCGTCTACCAAGTTTGGGGCAAAAACTCCCTCTGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
** * *
16641755 ATTTTAAAAAATCCCGAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAATCGAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
16641820 GCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
16641885 TTGGCAAGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCT
584 TTGGCAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCG
* * * * * *
16641950 TATCCCGTCTCTCTGGCCGGCGTAGTACCCGCCCGCGCGCCCACTCGCTCGTTTCATCAGATGGC
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCG--C-C-CGCTCGTTTCGTCGGTTGGC
** * * *
16642015 TTAGGCATACAGAGTTCATTCCTTGTCTAAGATCAGATTGGACCGAGGGTT-GCGG-TAGCATG-
710 TTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGGTGGCAAGCATGC
** * * * ** * * ** *
16642077 ATCGGTAGCACACAGAGGGGGATCAGACCGAGGGTTGCGACAGT-AAG---ATC-GG-CAGACTG
775 AGAGG-GGGAC-CCGA--TCGATC--CCCGA--CTTGCG-CA-TCCCGCCCCTCTGGCCAG-CTG
* * * * * * ** * * * * * *
16642136 ATC-CCCGGCTTGCACATCCTGCCCCTCTAGCCGGCTGAGCGCCTGCACGCTCGTT--TTACGAG
829 AGCGCCC-GC-AGCTCAT--T--TCGTC-GGTTGACT-TG-GCAT--ACGGT-GTTCATTCCCAG
16642198 TTGACTTA
882 TT-A---A
* * * *
16642206 GGCATACGGAGTACATTCCCAGTCTATGATC-AGACC-GAATCGAGGGTTGCGGTAGCACATGCT
1 -GCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAG-ACCGAGGGTTGCGGCAGCACATGCT
* *
16642269 GGGCTCGGGCATGTGCTGGTGCCGTATTTTTTTTCACCGGGGCACCATCGCCAGAGCATCACCGG
63 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCAGAGCATCACCGG
***
16642334 AGAACCTGATTAGCGGCATTGGGGTTCCGATGATCGGGGGGCCGGGGGGTGTGCGCACATGATGT
128 AGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGCCGGGGGGTGTGCGCACATGATGT
* * *
16642399 GCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCACATCAAACATCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
16642464 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGGCAGTAGCTATTAAAGTGTCTTAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
16642529 TGGGGGCACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTTAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
16642594 GGGCATGCCAGA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTTCTTCCAAAA
388 GTGCATGCCA-ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * *
16642658 AAATTTTAAAAGATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
452 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTC
16642723 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
16642788 CATTGGCAAGCAGAAATATGAAGATCTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTG
582 CATTGGCAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTG
* * *
16642853 CGCATCCCGTCTCTCTGG-CGGCGTAGTGCCCGCCCGATCGCCCGCACGTTTCGTCAGTTGGCTT
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTT
* *
16642917 AGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGATCAAGGGTT-GTGGC-AGCATGCAG
712 AGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGGTGGCAAGCATGCAG
** ** * * * * ** *
16642980 AGGGGGACCCGCCCGATCTTCGGCTTTCGCATCCTGCCCCTATGGCCAGCAAAGCGCCCGCATGT
777 AGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCCCGCA-GC
* *
16643045 TCGTTTCGTGGGTTGACCTTGGCATACGGTGTTCATTCCCAGTTAA
841 TCATTTCGTCGGTTGA-CTTGGCATACGGTGTTCATTCCCAGTTAA
**
16643091 GCATACGGAGTTCATTCAGAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * **
16643156 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCACCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCAGAGCATCACCGGAGA
* *
16643221 ACCTGACCGGCGGCATTGGGGTTCCGGTGATCGGGGGATCCGGGGGGGGTGTGCGCACATGATGT
131 ACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGG-GCC--GGGGGGTGTGCGCACATGATGT
* *
16643286 GTGATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
16643351 CACCCCCTTAAAGAGCATTTTAGATTTTACAGGTTTACTGTCAATAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
16643416 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATT-GAGTTTTTAGCTGAATTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TTCGAGTTTTTAGCTGAATTTTTT
*
16643480 TGTGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* *
16643545 AAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTTGTC
452 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
16643610 TCGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATGAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
16643675 CATTGGCATGCAGAAATATGAAGATGTGCCTAAA-CCAGCCTGCCACCCTATCAATCCATGGCTT
582 CATTGGCAAGCAGAAATATGAAGATGTGCCTAAACCCA-CCTACCACCCTATCGATCCATGGCTT
* * *
16643739 GCGCATCCCGTCTCTCTGGACGGCGTAGTGCCCGCCCGCCCGCCTGCTTACTCGTTTCGTCGGTT
646 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGCC--C--GCTCGTTTCGTCGGTT
* * *
16643804 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCGGACCGAGGGTTGCAGTAGCAA
707 GGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAG-ACTGGACCGAGGGTTG--GTGGCAA
* ** * *
16643868 GATCGGTAGCAGGTAGTGGGGGACCCTTTCGATCCCCGACTTGCACATCCCGCCCCTCTGGCCGG
769 G--C-AT-GCA-G-A--GGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCAG
** * * *
16643933 CTGAGCATCCGCACGCTCATTTTGTCGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAA
826 CTGAGCGCCCGCA-GCTCATTTCGTCGGTTGACTT-GGCATACGGTGTTCATTCCCAGT-TAA
* * * * * *
16643996 GCATACGGAGTTCATTCCCAGACTGAGATTGGACCAGACCAAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
16644061 CTCGAGCATGTGCTGGTGCCG-------CTTCATCGAGGCACCATCGCAAGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCAGAGCATCACCGGAGA
* * * ** *
16644119 ACCTGAACGACGACATTGGGGTTCCGATGATCGGGGCGGCCGAGGGGGTGTATGCACAGGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGG-GGCCG-GGGGGTGTGCGCACATGATGTG
** * * * *
16644184 CGATGGGCACTGATACTTAGCCATTATATTGGCCCCCTATCCCTCATCAAACCTAGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
16644249 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAATT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
16644314 CGGGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTCGAGTGTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
16644379 TGCATGCCAACAAAAATACAAGGATTACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAACAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
16644444 ATTTTAAAAAATCCAGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACGAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
** *
16644509 GCCATGAAACTTTGCGTGAAAGGCTTAAGGGAGCATTGTATGAATTTACAAGCCATAAAAATGGC
519 GCCATGAAACTTCACGTG-AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* ** * *
16644574 ATTTGCAAATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCATGACTTGC
583 ATTGGCAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGC
* *
16644639 GCATCCCGTCTCTCTAGCCGGCGTAGTGCCCG--C-CT-GCCCGCTCGTTTCGTCGGTTGCCTTA
648 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * *
16644700 GGCATA-AGGAGTTCATTCCTAGTCTAAGATCAGACTGGACTGAGGGTTGCGGTAGCAAGATCGA
713 GGCATACA-GAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTT--GGTGGCAAG--C-A
* * * * *
16644764 TAGCACGTAGAGGGGGACCCGATTGATCCCAGGCTTGCGTATCCCGCCCCTCTGGCCAGCTGAGT
772 T-G--C--AGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCAGCTGAGC
* * * * *
16644829 GCCCGTACCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
832 GCCCGCAGCTCATTTCGTCGGTTGACTT-GGCATACGGTGTTCATTCCCAGT-TAA
* * * * *
16644885 GCATACAGAGTTCATTCCCAGTCTAAGATCAAATCAGACCAAGGGTTGCGGCAACACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * * **
16644950 CTCGGGCATGTGCTGGTGCCACAGTTTTCTTCGTCGGGGCACCATCGCCTGAGCATCGCCAAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCAGAGCATCACCGGAGA
* * * * ** *
16645015 AACTGACCGGCGGCATTAGGTTTCTGGCGATCGAGGGGGTCGAGGCGGGGGTGTGCGCACATGAT
131 ACCTGACCGGCGGCATTGGGGTTCCGATGATCG-GGGGG-C--CG-GGGGGTGTGCGCACATGAT
16645080 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
191 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
16645145 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
256 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
16645210 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTT
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
*
16645275 TTGTGCATGCCAA-AAAAAGTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAA
386 TTGTGCATGCCAACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
** * * *
16645339 AAAAATTTTAAAAAATCCCGAACCAAAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCA
450 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCG
16645404 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
16645469 GG-ATTTGGCAAGTAGAAATATGAAGATGTGCCTAAACCCACTTACCACCTTATCGATCCATGGC
580 GGCA-TTGGCAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGC
* * * * * *
16645533 ATGAGCATCCTGTCTCTCTGGCCGGCGTAGTGCCTGTCCGCCCGCCCGCGCGCTCGTTT-ATCGG
644 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-C---CCGCCCGCTCGCCCGCTCGTTTCGTCGG
* * * *
16645597 TTGGCTTAGGCATACGGAGTTCACTCCTAATCTAAGATC
705 TTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATC
16645636 GGATCAGATC
Statistics
Matches: 2998, Mismatches: 351, Indels: 161
0.85 0.10 0.05
Matches are distributed among these distances:
884 146 0.05
885 5 0.00
886 4 0.00
887 457 0.15
888 29 0.01
889 126 0.04
890 129 0.04
891 6 0.00
892 72 0.02
893 5 0.00
894 5 0.00
895 8 0.00
896 72 0.02
897 349 0.12
898 322 0.11
899 340 0.11
900 78 0.03
901 5 0.00
902 5 0.00
903 3 0.00
904 101 0.03
905 578 0.19
906 152 0.05
907 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (885 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCAGAGCATCACCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCA
TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
ATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGGTGGCAAGCATGCAGAGGG
GGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCCCGCAGCTCATT
TCGTCGGTTGACTTGGCATACGGTGTTCATTCCCAGTTAA
Found at i:16644003 original size:26 final size:26
Alignment explanation
Indices: 16643967--16644016 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
16643957 TCGGTTGACT
16643967 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
16643993 TAAGCATACGGAGTTCATTCCCAG
1 TAAGCATACGGAGTTCATTCCCAG
16644017 ACTGAGATTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:16644889 original size:26 final size:26
Alignment explanation
Indices: 16644859--16644911 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16644849 GTTGACTTAG
*
16644859 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16644885 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16644911 G
1 G
16644912 ATCAAATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16647339 original size:26 final size:26
Alignment explanation
Indices: 16647310--16647360 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
16647300 GTTGACTTAG
16647310 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16647336 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
16647361 GGATCGGACC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16648261 original size:26 final size:26
Alignment explanation
Indices: 16648211--16648263 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16648201 GTTGACTTAG
**
16648211 GCATATGGAGTTTGTTCCCAATCTAA
1 GCATATGGAGTTCATTCCCAATCTAA
* *
16648237 GCATATGGAGTTCATTTCCAGTCTAA
1 GCATATGGAGTTCATTCCCAATCTAA
16648263 G
1 G
16648264 ATCGAACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAATCTAA
Found at i:16648775 original size:901 final size:896
Alignment explanation
Indices: 16646436--16649876 Score: 4725
Period size: 901 Copynumber: 3.8 Consensus size: 896
16646426 GTTGACTTAG
* * ** * * *
16646436 GCATACGGAGTTCATTCCCAGTCTCAGATCAAACCGGATTGAGGGTTGCGGTAGTAGATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * **
16646501 CTCGGGCATGTGCTGGGGCCACATTTTTCTTCGACGGGGCACCATCGTCGGAGCATCGCCGAAGA
66 CTCGGGCATGTGCTGGGGCCGCATTTTTCTTCGCCGGGGCACCATCACCGGAGCATCGCCG-AGA
* * * * * *
16646566 ACCTGATCGACGGCACTGGGGTTCCGGTGATCGGGGGGGCCGAGGGGTGTGCGCGCACATCATGT
130 ACCTGACCGACGGCATTGGGGTTCCGATGATCAGGGGGGCCG-GGGG-GTGTGCGCACATGATGT
*
16646631 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAATCCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
16646696 CACCACCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAA
258 CACCACCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
16646761 TGGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
16646826 GTGCTTGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGTCCAAAACTCCTGCCGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA
* * * * *
16646891 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCTTAAAAAATAAAAAATGAGTCATCT
453 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * * * * *
16646956 TGCCATGAAACTTCACGCGAAGGTTTAAGCGACCATTTTATCAATTTACAAGCCATAAAAAT-CC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
16647020 TATTGGCATGCAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCATGGCTTG
583 -ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
** ** ** * *
16647085 CGCATCCCGTCTCTCCGGCCGGTGTAGTGCCCGCCCACCCACCCGCTTGTTTCATCGGTTGGCTG
647 CGCATCCCGTCTCTCTAGCCGACGTAGTGCCCG-CC-CCGTCCCGCTCGTTTCATCGGTTGGCTT
** * * * *
16647150 AGG-ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACGGAGGGTTATGATAGTAGGATCGG
710 AGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGTGGTAGCAGGATCGG
* *
16647214 CAGTACGCAGAGGAGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
775 CAGCACGCAGAGGAGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
*
16647279 GCCCGCAT-GCTCGTTTGGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
840 GCCCGC-TCGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
16647336 GCATACGGAGTTCATTCCCAGTCTAGGATCGGACCGAACCGAGGGTTGTGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
16647401 CTCAGGCATGTGCTGGTGTCGCATTTTTCTTCACCGGGGCACCATCACCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGGGCCGCATTTTTCTTCGCCGGGGCACCATCACCGGAGCATCGCC-GAGA
* * * * *
16647466 ACTTGATCGACGGCATTGGGGTTCCAACGATCAGGGGGGCCGGGAGGGTGTGCTCACATGATGTG
130 ACCTGACCGACGGCATTGGGGTTCCGATGATCAGGGGGGCCGGG-GGGTGTGCGCACATGATGTG
* *
16647531 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGACAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
16647596 ACCCCCTTAAAGAGCATTTGAGATTTTGCAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCACCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
16647661 GGGGACACTTTTTTCAAATGGTCATAAAATCTTGTACACTTCGAGTTTTTAGCTGCATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
16647726 TGCATGCCAA-AAAAATTACATGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTTCGAAAA
389 TGCATGCCAACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA
* * * *
16647790 AAGTTTAAAAAATCCCAAACCGTAAAAAAGGTTT-GAAAATCGTGAAAAATAGAAAACGAGTTGT
453 AATTTTAAAAAATCCCGAACCGT-AAAAA-GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* * *
16647854 CTTGCCAAGAAACATCACGTGAAGGCTTAAGGGACCATTGTATGAATTGACAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
16647919 GCATTGGCATGCGGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
581 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * * * *
16647984 GCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCTG-CCTGT-TCGCTCATTTCGTCGGTTGGCTTA
646 GCGCATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCCGTCCCGCTCGTTTCATCGGTTGGCTTA
*** * * * *
16648047 GGCATACGGAGTTCATTCCCTA-TCTAAGATTGGATGGGACCAAGGGTTGTGGCAACAGGATCAG
711 GGCATACGGAGTTCATTCCC-AGTCTAAGATTGGACCAGACCGAGGGTTGTGGTAGCAGGATCGG
* * * * * **
16648111 TAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCTCCTCTAGCTAGCTGAGC
775 CAGCACGCAGAGGAGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* ** *
16648176 GCCCGCTCGCCCGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTTGTTCCCAATCTAA
840 GCCCGCT----CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
16648237 GCATATGGAGTTCATTTCCAGTCTAAGATCGAACCGGACTGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
*
16648302 CTCGGGCATGTGCTGGGGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCAGAGA
66 CTCGGGCATGTGCTGGGGCCGCATTTTTCTTCGCCGGGGCACCATCACCGGAGCATCGCC-GAGA
* * * * *
16648367 ACCTGACCGGCTGTATTGGGGTTCCGGTGATC-GAGGGGGTCGGGGGGTGTGCGCGCACATGATG
130 ACCTGACCGACGGCATTGGGGTTCCGATGATCAG-GGGGGCCGGGGGGTGT--GCGCACATGATG
* * *
16648431 TGGGATGGGTGCTAGTACTTGGCCCTTATATTTGCCCCCTATCCCTCATCAAACCTCGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
16648496 ACACCACCTTAAAGAGCATTTGAGATTTTATAGGTTTACTGCCAGTAGCCATTAAAGTGTCCGAA
257 ACACCACCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
16648561 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTCGAGCTTTTAGCTGAATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTT
*
16648626 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAGCCTTCCGAA
386 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAA
*
16648691 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAA-CGTGAAAAATAGAAAACGAGTCGT
451 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
16648755 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * *
16648820 GCATTGACACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACGCTATCGATTCACAGCTT
581 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
16648885 GCGCATCCCGTCTCTCTAGCCGACATAGTGCCCGCCTGCCCGTCTGCCCGTTCGTTTCATTGGTT
646 GCGCATCCCGTCTCTCTAGCCGACGTAGTGCCCG-C--CCCG--T-CCCGCTCGTTTCATCGGTT
* *
16648950 GGCTTAGGCATACGGAGTTCATTCCCATTCTAAGATTGGACCAGACCGAGGGTTGCGGTAGCAGG
705 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGTGGTAGCAGG
* * * * *
16649015 ATTGGCAACATGCAGAGGAAGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGT
770 ATCGGCAGCACGCAGAGGAGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * *
16649080 TGAGCACCC-ATACGCTCGTTTCGTGAGATGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
835 TGAGCGCCCGCT-CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** *
16649142 GCAAATGGAGTTTGTTCCCAGTCTAAGATC-AGACCGGACCGAGGGTTGCAGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * *
16649206 GCTCTGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCAT---C--A-C--CG--GAGA
65 GCTCGGGCATGTGCTGGGGCCGCATTTTTCTTCGCCGGGGCACCATCACCGGAGCATCGCCGAGA
* * * *
16649261 ACCTGACCGGCGGCATTGGGGTTCCGATTATCAGGGGGGCCGGGGGGTGTACGCACATAATGTGC
130 ACCTGACCGACGGCATTGGGGTTCCGATGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
16649326 GATGGGTGCTGGTGCTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTCAAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
16649391 CC-CCTTAATGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
260 CCACCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
16649455 GGGACACATTTTTCAAATGGTCACAAAATCTTGTACACTTCGTGTTTTT-GCTGATTTTTTTTTG
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-ATTTTTTTG
* * * * *
16649519 TGCATACCAAAAAAAATACAAGGATCACGTCTACGAAGTTTGGGACCAAAAATCTTTCCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAA
* * * *
16649584 ATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
16649649 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGGCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
16649714 TTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTATCACCCTATCGATCCACGGCTTGCG
584 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
16649779 CATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCGCTCGTCCGCCCGCTCGTTTCATCGGTTGGC
649 CATCCCGTCTCTCTAGCCGACGTAGTGCCCG-CC-C-CGT---CCCGCTCGTTTCATCGGTTGGC
*
16649844 TTAGGCATACGAAGTTCATTCCCAGTCTAAGAT
708 TTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
16649877 CGAAGCCAAC
Statistics
Matches: 2249, Mismatches: 256, Indels: 81
0.87 0.10 0.03
Matches are distributed among these distances:
889 2 0.00
890 107 0.05
891 335 0.15
892 74 0.03
894 47 0.02
895 1 0.00
896 22 0.01
897 111 0.05
898 7 0.00
899 278 0.12
900 330 0.15
901 375 0.17
902 196 0.09
903 82 0.04
904 6 0.00
905 144 0.06
907 1 0.00
908 2 0.00
909 129 0.06
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (896 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGGGCCGCATTTTTCTTCGCCGGGGCACCATCACCGGAGCATCGCCGAGAA
CCTGACCGACGGCATTGGGGTTCCGATGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CACCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAAT
TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCCGTCCCGCTCGTTTCATCGGTTGGCTTAGGCAT
ACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGTGGTAGCAGGATCGGCAGCAC
GCAGAGGAGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
TCGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:16650513 original size:708 final size:699
Alignment explanation
Indices: 16649156--16650594 Score: 2156
Period size: 708 Copynumber: 2.0 Consensus size: 699
16649146 ATGGAGTTTG
* * * *
16649156 TTCCCAGTCTAAGATC-AGACCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCTGGCATGTGT
1 TTCCCAGTCTAAGATCGAGACCGAACCGAGGGTTGCAGCAGCACATACTGGGCTCGGGCATGTGC
16649220 TGGTGCCGCATTTTTCTTCGCCGGGGCACCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTC
66 TGGTGCCGCATTTTTCTTCGCCGGGGCACCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTC
** * *
16649285 CGATTATCAGGGGGGCCGGGGGGTGTACGCACATAATGTGCGATGGGTGCTGGTGCTTGGCCCTT
131 CGACGATCAAGGGGGCCGGGGGGTGTACGCACATAACGTGCGATGGGTGCTGGTGCTTGGCCCTT
* * * *
16649350 ATATTGGCTCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCTTAATGAGCATTTGAGATTT
196 ATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCTAAAAGAGCATTTCAGATTT
*
16649415 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACATTTTTCAAATGGTCACA
261 TACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACATTTTTCAAATGGTCACA
* * * *
16649480 AAATCTTGTACACTTCGTGTTTTTGCTGATTTTTTTTTGTGCATACCAAAAAAAATACAAGGATC
326 AAATCTTATACACTTCGAGTTTTTGCTGATATTTTTTTATGCATACCAAAAAAAATACAAGGATC
* *
16649545 ACGTCTACGAAGTTTGGGACCAAAAATCTTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAA
391 ACGTCTACCAAGTTTGGGACCAAAAATCTTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAA
* * *
16649610 AGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
456 AGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATCAAACTTCACGTGAAGGCTTA
* * *
16649675 AGGGACCATTGTATGAATTTAAAAGGCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTG
521 AGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCAAGAAAAAATATGAAGATGTG
* *
16649740 CCTAAACCCACCTATCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGACGTAGT
586 CCGAAACCCACCTATCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCACTAGCCGACGTAGT
* * *
16649805 GCCCGCCCGCTCGTCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCA
651 GCCCACCCAC-C-T------GCTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTAA
* * *
16649862 TTCCCAGTCTAAGATCGA-AGCC-AACTGAGGGTTGC-GATAGCACATACTGGGGTCGGGCATGT
1 TTCCCAGTCTAAGATCGAGA-CCGAACCGAGGGTTGCAG-CAGCACATACTGGGCTCGGGCATGT
* **
16649924 GCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCGTCGGAGAACCTGACCGGCGGCATTGGGGT
64 GCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCACCGGAGAACCTGACCGGCGGCATTGGGGT
* * * *
16649989 TCCGGCGATCAAGGGGGCCGGTGGGGTGTGCGCACATGACGTGTGATGGGTGCTGGTAG-TTGGC
129 TCCGACGATCAAGGGGGCCGG-GGGGTGTACGCACATAACGTGCGATGGGTGCTGGT-GCTTGGC
*
16650053 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTAAAAGAGCATTTCA
192 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA-CCCCTAAAAGAGCATTTCA
* *
16650118 GATTTTACAAGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
256 GATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACATTTTTCAAATGG
*
16650183 TCACAAAATCTTATACACTTCGAGTTTTTAGCTGA-ATTTTTTTATGCATGCCAAAAAAAATACA
321 TCACAAAATCTTATACACTTCGAGTTTTT-GCTGATATTTTTTTATGCATACCAAAAAAAATACA
* * * *
16650247 AGGATCACGTGTACCAAGTTTGGGGCCAAAACT-TCTTCCGAAAGAATTTTAAAAAATCCCGAAC
385 AGGATCACGTCTACCAAGTTTGGGACCAAAAATCT-TTCCGAAAAAATTTTAAAAAATCCCGAAC
16650311 CGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATCAAACTTCACGTGA
449 CGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATCAAACTTCACGTGA
* * *
16650376 AGGCTTAAGGGACTATTGTATGAATTTACAAGCCATAAAAATTGCATTGGCAAGAAAAAATATGA
514 AGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCAAGAAAAAATATGA
* * *
16650441 AGATGTGTCGAAACCCACCTATCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCACTGGCTG
579 AGATGTGCCGAAACCCACCTATCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCACTAGCCG
* * *
16650506 GCGTAGTGCCCACCCACCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTAA
644 ACGTAGTGCCCACCCACCTGCTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTAA
* *
16650562 TTCCCAGTCTAAGATCG-GACCAAACCAAGGGTT
1 TTCCCAGTCTAAGATCGAGACCGAACCGAGGGTT
16650595 ATGGCAGCAA
Statistics
Matches: 664, Mismatches: 59, Indels: 26
0.89 0.08 0.03
Matches are distributed among these distances:
699 2 0.00
700 61 0.09
705 1 0.00
706 128 0.19
707 84 0.13
708 383 0.58
709 5 0.01
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (699 bp):
TTCCCAGTCTAAGATCGAGACCGAACCGAGGGTTGCAGCAGCACATACTGGGCTCGGGCATGTGC
TGGTGCCGCATTTTTCTTCGCCGGGGCACCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTC
CGACGATCAAGGGGGCCGGGGGGTGTACGCACATAACGTGCGATGGGTGCTGGTGCTTGGCCCTT
ATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCTAAAAGAGCATTTCAGATTT
TACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACATTTTTCAAATGGTCACA
AAATCTTATACACTTCGAGTTTTTGCTGATATTTTTTTATGCATACCAAAAAAAATACAAGGATC
ACGTCTACCAAGTTTGGGACCAAAAATCTTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAA
AGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATCAAACTTCACGTGAAGGCTTA
AGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCAAGAAAAAATATGAAGATGTG
CCGAAACCCACCTATCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCACTAGCCGACGTAGT
GCCCACCCACCTGCTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTAA
Found at i:16652117 original size:892 final size:878
Alignment explanation
Indices: 16649826--16657171 Score: 8298
Period size: 862 Copynumber: 8.3 Consensus size: 878
16649816 CGTCCGCCCG
* * * * * ** *
16649826 CTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATC-GAAGCCAACTGA
1 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACG-GGACCGA
** * * * *
16649890 GGGTTGCGATAGCACATACTGGGGTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCAC
65 GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCAC
* *
16649955 CAT---C---G-----TCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCAAGGGGGCCG
130 CATCGCCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTT-CGGCGATCGA-GGGGCCG
* * *
16650009 GTGGGGTGTGCGCACATGACGTGTGATGGGTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCC
193 G-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * *
16650074 CTCATCAAACCTCGAGAACTCACACCCCCTAAAAGAGCATTTCAGATTTTACAAGTTTGCTGCCA
257 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* *
16650139 GTAGCCGTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTC
322 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * *
16650204 GAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTGTACCAAGTTTG
387 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * *
16650269 GGGCCAAAACTTCTTCCGAAAGAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATG
452 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATG
* *
16650334 AAAAATAAAAAACGAGTCGTCTTGCCATCAAACTTCACGTGAAGGCTTAAGGGACTATTGTATGA
517 AAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * * * * * *
16650399 ATTTACAAGCCATAAAAATTGCATTGGCAAGAAAAAATATGAAGATGTGTCGAAACCCACCTATC
582 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * *
16650464 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCACTGGCTGGCGTAGTG--CCCACCCA-CCT-
647 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCCCGCCCAGCCTC
*
16650525 --GCT-CG----TTTCGTCGGTTGGCTTAGGCATACGGAGTTAATTCCCAGTCTAAGATCGGACC
712 CCGCTCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * ** * * *
16650583 AAACCAAGGGTTATGGCAGCAAGATC-AGCAGCACGCAGAGGAGGACCCGACCGATCCCCGACTT
777 AGACTAAGGGTTGCGGCAGCAGGATCGA-CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTT
* * * * *
16650647 GCACATCCCACCCCTCTGGCCTGCTGAACGCCCGCACG
841 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACA
*
16650685 CTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCAAACAGAGTTCATTC
1 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT--------A-AG---A-T-
*
16650750 CCAGCTAAGATCGGACCGAACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
52 -C-G----GA-CGG---G-ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * * * **
16650815 CCGCATCTTTCTTCG-CTGAGGCACCATCGTCGGAGCATCATTGGAGAACCTGACCGGTGGCATT
106 CCGCATTTTTCTTCGTC-GGGGCACCATCGCCGGAGCATCATCGGAGAACCTGACCGACGGCATT
* * * *
16650879 GGGGTTCCGACGATCGGGGGGCCGGGGTGGTGTGCGCACATAATGTGCGATGGGTGCTTGTACTT
170 GGGGTT-CGGCGATCGAGGGGCCGGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
** *
16650944 GGCCCTTATATTGGCCCGTTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATT
233 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
*
16651009 TGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
298 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
*
16651074 TGGTCACAAAATCTTGTACACTTTCGAGTTTTTAGCTG-ATTTTTTTGTGCATGCCAAAAAAAAT
363 TGGTCACAAAATCTTGTACAC-TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* *
16651138 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTGAAACATCCCGA
427 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGA
* * *
16651203 ACCGCAAAAAGTTTTAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGT
492 ACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* *
16651268 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCATAAAAATCGCATTGGCATGCAGAAATAT
557 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATAT
* *
16651333 GAAGATGTGCCTAGACCCACCTACCACCCTATCGATCCACGGTTTGCGCATCCCGTCTCTCTGGC
622 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
** *
16651398 CGACGTAGTGCCCACCCGCTCGCTCAGTCGCTCGCCCGCTCGCCCGCTCATTTTATCAGTTGGCT
687 CGACGTAGTG-CC-CCCG--C-C-CAG-C-CT--CCCGCT---CCGCTCATTTCGTCGGTTGGCT
* *
16651463 TAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACTAAGGGTTGCGGCAGCAGGATCG
739 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTAAGGGTTGCGGCAGCAGGATCG
* * * * * * *
16651528 ACAACATGTAGAGGGGGACCCGATCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTAAA
804 ACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
16651593 CGCCCGCACA
869 CGCCCGCACA
* *
16651603 CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGACGGGACCGAG
1 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACGGGACCGAG
** * *
16651668 GGTTGCGTTAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACT
66 GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACC
* * * * *
16651733 ATCACCGGAGCATCATCGGATAACCTGACTGACGGCATTGAGGTTCGGACGATCGAAGGGGCTGG
131 ATCGCCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCGG-CGATCG-AGGGGCCGG
* * *
16651798 GGGGTGTACGCACTTGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCAATCCCT
194 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
**
16651863 CATCAAACC-CGAGAACTTGCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
259 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* *
16651927 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAGGGTCAGAAAAT-TGTGTACACTTCG
324 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT-TGTACACTTCG
* * * *
16651991 AGTTTTTATCTGACTTTTTTTGTGCATGGCAACAAGAATACAAGGATCACGTCTACCAAGTTTGG
388 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * ** *
16652056 GGCCAAAACTCCTTCTGAAAAAAGTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCGTGA
453 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGA
* * *
16652121 AAAATAAAAAATGAGTTGTCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
518 AAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* *
16652186 TTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCA
583 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
** * * * *
16652251 CCCTATCGAGACAGGGCTTGCGCATCCCGTCTCTCAGGCCGGCGTAATGCCCGCCCGCCC-GCCT
648 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-CC-CCCGCCCAGCCT
* * * **
16652315 ACCC-CCCCGCTCATTTCGTCGGTTGGCTTAGGCATCCAGAGTTCATTCCCAGTCTAAGATTAGA
711 -CCCGCTCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * * * *
16652379 CCGGACTAAGGGTTGCGGTAGCAGGATCCG-CACCACGTAGAGGGGGACCTGACCGATCCCCGGC
775 CCAGACTAAGGGTTGCGGCAGCAGGAT-CGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGC
*
16652443 TTGAGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACA
839 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACA
* * * *
16652483 CTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTTTAAGATCGGAC-TGATCTGA
1 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACGGGA-CCGA
* * * * * * *
16652547 GGGTTGCGGCAGCACATGCTAGCCTCAGTCATGTGCTGGTGCCACATTTTTCTTCGTCAGGGCAT
65 GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCAC
* * * * * * * *
16652612 CATCGCCGGAACATCACCGGAAAACCTGACCGACGGTATTGGTGTTCCGACGATTGGTGGGGTCG
130 CATCGCCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTT-CGGCGA-TCGAGGGG-C-
* *
16652677 GGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
191 CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * * * *
16652742 CCTCATCAAACCTCGAGAAGTCACACCTCTTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGGC
256 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* * *
16652807 AGTAGCCATTAAAGTGTCTGAACTGGGGACACTTTTTTCAAAAGGTCAAAAAATCTTGTACACTT
321 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* *
16652872 CAACTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
386 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * ** *
16652937 GGGGCCAAAACTCC-TACTAAAAAA--TT------T--CGAACCGTAAAAAGTTTTGAAAATCTT
451 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCAT
* * * * * * *
16652991 AAAAAATAGAAAACGAGTCGTCTTGCCAGGAAACTTCATGTGAGGGCTTAAGGGCCCATTGCATG
516 GAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
**
16653056 AATTTACAAGCCATAAAAATGGCATTGGCCGGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
581 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
*
16653121 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGATGTAGTG--CCCGCCCA----
646 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCCCGCCCAGCCT
* * *
16653180 CCCG-TCCGCTCGTTTCGTCGGTTGGCTTAGGCATCCGGAGTTCATTCCCAGTCTAAGATCAGAC
711 CCCGCTCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* * * * * ** *
16653244 CGGA-TCGAGGGTTGCGGTAGCACGATCCG-CACCACATAGAGGAGGACCCGACCGATCCCCGGC
776 CAGACT-AAGGGTTGCGGCAGCAGGAT-CGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGC
* * *
16653307 TTGAGCATTCCGCCCCTCTGGCCGGTTGAGCGCCCGCACA
839 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACA
* * * * *
16653347 CTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTTTAAGATCGGAC-TGATCTGA
1 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACGGGA-CCGA
* * * * * * *
16653411 GGGTTGCGGCAGCACATGCTAGCCTCAGTCATGTGCTGGTGCCACATTTTTCTTCGTCAGGGCAT
65 GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCAC
* * * * * * * * *
16653476 CATCGTCGGAGCATCACCGGAAAACCTGATCGACGGTATTGGTGTTCTGGTGATCGGTGGGGTCG
130 CATCGCCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTC-GGCGATC-GAGGGGCCG
16653541 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
193 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* * * * *
16653606 TCATCAAACCTTGAGAACTCACACCCCTTTAAAGAGAATTTGAGATTTTATAGGTTTGCTGGCAG
258 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* * *
16653671 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAAGGTCAAAAAATCTTGTACACTTCA
323 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
*
16653736 ACTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
388 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * ** * *
16653801 GGCCAAAACTCC-TACTAAAAAA--TT------T--CGAACCGTAAAAAGTTTTGAAAATCTTAA
453 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGA
* * * * * *
16653855 AAAATAGAAAACGAGTCGTCTTGCCAGGAAACTTCATGTGAGGGCTTAAGGGCCCATTGCATGAA
518 AAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
**
16653920 TTTACAAGCCATAAAAATGGCATTGGCCGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
583 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * *
16653985 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCAATGTAGTG--CCCACCCA----CC
648 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCCCGCCCAGCCTCC
* * * *
16654044 CG-TCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAATATCGGACCA
713 CGCTCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCA
** * * ** * * *
16654108 GACCGAGGGTTGTGGCAGCAGGATCAACAGCACATAGAGGGGGGCCCGATCGATCCCCAGCTTGC
778 GACTAAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGC
* * * * *
16654173 GCATCCTGCCCCTTTGGCCGGCTGAGCACCTGTC-CG
843 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG-CACA
*
16654209 CTCGTTTCGTGGGTTGACTTAGGCATACGGAATTCATTCCCAGTCTAAGCATACGGAGTTCATTC
1 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A---
* * *
16654274 CCAGTCTAAGATCAAATCAGACCGAGGGTTGTGGCAGGACATGCTGGGCTCGGGCATGTGCTGGG
56 -C-G-----G---------GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
** * * * *
16654339 GCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCAGAGAACCTGACCGGCTGTATT
105 GCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCATCGGAGAACCTGACCGACGGCATT
* * * * *
16654404 GGGGTTCCGGTGATCGAGGGG--GGGGTGTGCGCGCACATGATGTGGGATGGGTGCTAGTACTTG
170 GGGGTT-CGGCGATCGAGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* *
16654467 GCCCTTATATTTGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTCAAAGAGCATTT
234 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* *
16654532 GAGATTCTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAAT
299 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * *
16654597 GGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAAAAAAAATAC
364 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* * * * * *
16654662 AAGGATCACATCTACCATGTTTAGGGCCAAAAATCCTTCCGAAAACATTTTAAAAAATCTCGAAC
429 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAAC
* * *
16654727 CGTAAAACA-TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTCCCATGAAACTTCACATG
494 CGTAAAA-AGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
*
16654791 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATCTG
558 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
* * * * *
16654856 AAGATGTGCCTAAACCCACCTACCACCCTATCAATCCATGGCTTGTGCATCCCGTCTCTGTGGCT
623 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * ** * *
16654921 GGCGTAGTG--CCCGCCC-G--T-CCG-T----ACATTTTATCAGTTGGCTTAGGCATACGCAGT
688 GACGTAGTGCCCCCGCCCAGCCTCCCGCTCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * * * * * * *
16654975 TCATTTCCAATCTAAGATCGAACCGGACCAAGGATTGTGGCAGTAGGATCGGCAGCACGCAGAGG
753 TCATTCCCAGTCTAAGATCGGACCAGACTAAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGG
* * * * * * *
16655040 GGGACCCGACCGATCCCCGGCTTACGCATCTCACCCCTATGGTCGGCTGAACGCCTGCACA
818 GGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACA
* * * * * **
16655101 CTCATTTCATTGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG
1 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACGGGACCGAG
* ** * *
16655166 GGTTACGATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACC
66 GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACC
* *
16655231 AT---C--A-C--CA---GAGAACCTGATCGACGACATTGGGGTTCAGGCGATCG-GGGGTCCGA
131 ATCGCCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTC-GGCGATCGAGGGG-CC--
*
16655284 GGGGGGTGTGCGCACGTGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
192 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * * * *
16655349 CTCATCAAACCTTGAGAACTCACACCCCCTCAAAGAGCATTTGAGA-TTTATAGGTTTACTCCCA
257 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* *
16655413 GTAGCCATTAAAGTATCTGAAATGGGGACACTTTTTTCAAATGTTCACAAAATCTTGTACACTTC
322 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * * *
16655478 AAGTTTTTAGCTGATTTTTTTTGTGCATACCAACAAAAATACAAGAATCACGTCTACCAAGTTTG
387 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* ** * *
16655543 GAGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCGTAAAAACTTTCCAAAATCATG
452 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATG
* * * * *
16655608 AAAAATAGAAAAGGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTAAGA
517 AAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* **
16655673 ATTTACAAGCCATAAAAATGGCGTTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACC
582 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * *
16655738 ACCCTATCGATCCACGGCTTGCGCATCCAGTCTCTCTGGTCGACGGAGTGCCCGCCTGCCC-GCC
647 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC-CC-GCCCAGCC
* * * *
16655802 TGCCCGC-CCGCCCGTTCGTTTCGTC-CTTCGGCTTAGGCATACGGAGTTCATTCCCTGTCTCAG
710 T-CCCGCTCCG--C--TCATTTCGTCGGTT-GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * ** * * * * * * * * *
16655865 ATTGGATCTTACTGATGGTTGGGGTAGCAGGATCGGCAACATGCAGAGGGGGTCCCGACCAATCC
769 ATCGGACCAGACTAAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCC
* * * * *
16655930 CCGACTTGCACATCCCGCCCCTCTGGTCGACTGAGCGTCCGCACA
834 CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACA
*
16655975 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACAGACTTCATTG
1 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G--------G
*
16656040 CCAGTCTAGGATCAGAGCGGATCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGT
55 --A--C--GG----GA-C----CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * * * * * * *
16656105 GCCGGATTTTTCTTCGTCGGGGTACCATCGTCGGGGCATCGTCAGAGAACCTGACCGGCGGCGTT
105 GCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCATCGGAGAACCTGACCGACGGCATT
* *
16656170 GGGGTGTCGGTGATCG-GAGGGCCGGGGGGGCTGTGCGCACATGATGTGCGATGTGTGCTGGTAC
170 GGGGT-TCGGCGATCGAG-GGGCC-GGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTAC
*
16656234 TTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCA
231 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
*
16656298 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCA
296 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* *
16656363 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTACATGCCAACAAAAA
361 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* *
16656428 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAGTCCCG
426 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCG
** *
16656493 AATTGTAAAAAGTTTCAAAAATCGTGAAAAA-AAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
491 AACCGTAAAAAGTTTCAAAAATCATGAAAAATAA-AAAACGAGTCGTCTTGCCATGAAACTTCAC
*
16656557 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAAT
555 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
* * * * *
16656622 AGGAAGATGAGCCTAAACCCACCTACTACCCTATTGATCCACGGCTTGCGCGTCCCGTCTCTCTG
620 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * * *
16656687 GGCGACGTAGTG--CCCG-CCTGCCTGCCTGC-CCGCTCATTTTGTCGGTTGGCTTAGGCATACG
685 GCCGACGTAGTGCCCCCGCCCAGCCT-CCCGCTCCGCTCATTTCGTCGGTTGGCTTAGGCATACG
* * * *
16656748 AAGTTCATTCCCAGTCTAAGATAGGACC-GAACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGC
749 GAGTTCATTCCCAGTCTAAGATCGGACCAG-ACTAAGGGTTGCGGCAGCAGGATCGACAGCACGC
* * * * * **
16656812 AGAGGGGGTCCCGATCAAACCCCGGCTTGCGCATCCCGCCTCTCTGGCCGATTGAGCGCCCGCAC
813 AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
16656877 A
878 A
*
16656878 CTCGTTTCGTGGGTTGACTTAGGCATATAGAGTTTATTCCTAGTCTAAGCATACGGAGTTCATTG
1 CTCGTTTCGTGGGTTG----A--C-------------T--TAG-----GCATACGGAGTTCATTC
* * * * *
16656943 CCAGTCTAGGATCGGACCGGACCGAGGGTTGTGGTAGCACATGCTGGGCTCGGGCATGTGCTGCT
40 CCAGTCTAAGATCGGACGGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * *
16657008 GTCGTATTTTTCTTCGTCGGGG---CAT---C---G--TCA---GAGAACCTGACCGACGGCGTT
105 GCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCATCGGAGAACCTGACCGACGGCATT
* * * *
16657059 GGGGTGTCGGTGATCGGGGGGGCCGGGGGGTGTGCGCATATGATGTACGATGGGTGCTGGTACTT
170 GGGGT-TCGGCGATC-GAGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
16657124 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
233 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
16657172 AAAAGTTTTG
Statistics
Matches: 5659, Mismatches: 600, Indels: 426
0.85 0.09 0.06
Matches are distributed among these distances:
854 5 0.00
855 29 0.01
857 1 0.00
858 353 0.06
859 147 0.03
860 2 0.00
861 4 0.00
862 681 0.12
863 7 0.00
864 335 0.06
865 1 0.00
866 70 0.01
867 1 0.00
868 9 0.00
869 1 0.00
871 1 0.00
872 187 0.03
873 3 0.00
874 165 0.03
875 2 0.00
876 1 0.00
879 2 0.00
880 301 0.05
881 9 0.00
882 79 0.01
883 180 0.03
884 66 0.01
885 253 0.04
886 8 0.00
887 8 0.00
888 153 0.03
889 78 0.01
890 9 0.00
891 20 0.00
892 559 0.10
893 172 0.03
894 468 0.08
895 54 0.01
896 194 0.03
897 5 0.00
898 5 0.00
900 70 0.01
901 1 0.00
902 3 0.00
903 209 0.04
904 3 0.00
905 4 0.00
906 4 0.00
907 15 0.00
908 5 0.00
909 4 0.00
910 63 0.01
911 433 0.08
912 6 0.00
914 3 0.00
916 1 0.00
918 174 0.03
919 1 0.00
922 1 0.00
924 3 0.00
926 1 0.00
927 1 0.00
928 2 0.00
929 24 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (878 bp):
CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACGGGACCGAG
GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACC
ATCGCCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCGGCGATCGAGGGGCCGGGG
GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAA
ATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCCCGCCCAGCCTCCCGC
TCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
TAAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCA
TCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACA
Found at i:16654270 original size:26 final size:26
Alignment explanation
Indices: 16654231--16654283 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16654221 GTTGACTTAG
16654231 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
*
16654257 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
16654283 G
1 G
16654284 ATCAAATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:16655799 original size:8 final size:8
Alignment explanation
Indices: 16655786--16655815 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
16655776 GTCGACGGAG
16655786 TGCCCGCC
1 TGCCCGCC
16655794 TGCCCGCC
1 TGCCCGCC
16655802 TGCCCGCC
1 TGCCCGCC
*
16655810 CGCCCG
1 TGCCCG
16655816 TTCGTTTCGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.00, C:0.63, G:0.27, T:0.10
Consensus pattern (8 bp):
TGCCCGCC
Found at i:16656036 original size:26 final size:26
Alignment explanation
Indices: 16655997--16656047 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
16655987 GTTGACTTAG
* *
16655997 GCATACGGAGTTCATT-CCTAGTCTAA
1 GCATACAGACTTCATTGCC-AGTCTAA
16656023 GCATACAGACTTCATTGCCAGTCTA
1 GCATACAGACTTCATTGCCAGTCTA
16656048 GGATCAGAGC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACAGACTTCATTGCCAGTCTAA
Found at i:16660996 original size:26 final size:26
Alignment explanation
Indices: 16660966--16661018 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16660956 GTTAACTTAG
*
16660966 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16660992 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16661018 G
1 G
16661019 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16661580 original size:892 final size:894
Alignment explanation
Indices: 16657413--16662432 Score: 6547
Period size: 873 Copynumber: 5.6 Consensus size: 894
16657403 GTTGGCTTAG
* * *** * **
16657413 GCATACGGAGTTCATTCTCAGTCTAAGATTGGACCGGACCGA-GGTTTTGGCAGCACATGCTGGG
1 GCATACTGAGTTCATTCCCAGTCTAAGATCAAACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
* *
16657477 CTCGGGCATGTGCTGGTGCCGCATTTTTATTCGTCGGGGCACCATCGCCAGAGCATCACTGGAGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCAT--CC-G-G-AT--C-GGAGA
* * * * * * *
16657542 ACCAGAACGGCAGCATTAGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTCCGCACATGATGTGC
123 ACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
16657607 GATCGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
187 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
* * *
16657672 CCCCCTTAAAAAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCGATTAAAGTGTCTGAAATG
252 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
16657737 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGT
317 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* **
16657802 GCATGCCAACAAAAATACAAGGATCACATCTACC-TTTTTGGGGCC-AAACTCCTTCTGAAAAAA
382 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
**
16657865 TTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
447 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* *
16657930 CCATGAAACTTCATGTGAAGGCTTCAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
512 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
16657995 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCTCGGCTTGCAC
577 TGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * *
16658060 ATTCCATCTCTTTGGTCGGCGTAGTGCCCTTCTACCCGCCCGCCCGCTCGTTTCATCGGTTGGCT
642 ATCCCGTCTCTTTGGTCGGCGTAGTGCCCTCCTGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCT
* *
16658125 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGATGGTTACGGCAGCAAGATCG
707 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTACGGCAGCAAGATCG
* * * * ***
16658190 ATAGCATGCAGAGGGTGACCCGACCGATCCCCAGCTTGCACATCGCGCCCCTCTGGCCGGGGGAG
772 ATAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCGCGCCCCTCTGGCCGACTGAG
* *
16658255 CACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGGTCATTCGCAGTCTAA
837 CACCCGTACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGGTCATTCCCAGTCTAA
* * * * *
16658313 GCGTACTTAGTTCATTCCCAGTGTAAGATCAAATCAGACCAAGGGTTGCGGCAGCACATGCTGGG
1 GCATACTGAGTTCATTCCCAGTCTAAGATCAAACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
* * **
16658378 CTCGGGCATGTGATGGTGTCGTATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCATTGGAGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCAT--CC-G-G-ATC---GGAGA
* *
16658443 ACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGGCC-GGGGGTGTGCGCACATGATGGGCG
123 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
*
16658507 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCACCTATCCCTCATCAAACCTTGAGAACTCACAC
188 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
* *
16658572 CCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGGCAGTAGCCATTAAAGTGTCTGAAATGG
253 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
16658637 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACAACTTCTGAG-TTTTAGCTGAATTTTTTTT
318 GGACACTTTTTTCAAATGGTCACAAAATCTTGTAC-ACTTC-GAGTTTTTAGCTGAA-TTTTTTT
16658701 GTGC-TAG-CAACAAAAATACAAGGATCAACGTCTACCAAG-TTGGGGCCAAAACTCCTTCTTGA
380 GTGCAT-GCCAACAAAAATACAAGGATC-ACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-TGA
* * ** * *
16658763 AAAAATTTTTAAAAACATGCCCGAACCGCAAAAAGATT-AAAAATTATGGAAAAT-GGAAACGAG
442 AAAAA-TTTTAAAAA-AT-CCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
* * *
16658826 TTG-GTTGCCATG-AACTTCACCGTGGAGGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
504 TCGTCTTGCCATGAAACTTCA-CGT-GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* * *
16658889 AAAATGGGCA-TGGAATGTA-AAATATGAAGATGTGCCTTAAACCAACCCTACCACCATATCGAT
567 AAAAT-GGCATTGGCATGTAGAAATATGAAGATGTGCC-TAAACCCA-CCTACCACCCTATCGAT
* * *
16658952 CCACGGCTTG-GCATCCCGGCTCTTTGGTCGGCAT-GTGCCCTCCTGCTCGCTCCGGCCCGCT-A
629 CCACGGCTTGCGCATCCCGTCTCTTTGGTCGGCGTAGTGCCCTCCTGCCCGC-CC-GCCCGCTCA
* * *
16659014 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTAATTCCCAGTCTAAGATTGGATCGGACCGAGGGT
692 -TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGT
* * * * * * * *
16659079 TACGACAGCAGGATCGATAGCACGCAGAGGGCGACCTGATCGATCCCTGGCTTACGCATCGCACC
756 TACGGCAGCAAGATCGATAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCGCGCC
* * *
16659144 CCTCTAGCCGACTGAGCACCCGTACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGGTCATTC
821 CCTCTGGCCGACTGAGCACCCGTACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGGTCATTC
*
16659209 CCATTCTAA
886 CCAGTCTAA
* * * *
16659218 GCATACTTAGTTCATTCCCAGTGTAAGATCAAACCGGACCAATGGTTGCGGTAGCACA-------
1 GCATACTGAGTTCATTCCCAGTCTAAGATCAAACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
*
16659276 -T---GC-TG-G-T-GT--CG-ATTTTTCTTCGTCGGGGCACCAT--AG-TCGGAGAACCTGACC
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCCGGATCGGAGAACCTGACC
* * * *
16659327 GACGCCTTTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGTGCACATGATGTGCGATGGGCG
131 GACGGCATTGGGGTTCCGACGATCGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * **
16659392 CTCGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTA
195 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTA
* * * * *
16659457 AAGAGCATTTGAGATTTTATAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTAAAATAGGGACAAT
260 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* *
16659522 TTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCT-CATTTTTTTGTGCATGCCA
325 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* *
16659586 ACAAAAGTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTTG-AAAAATTTTAAAA
390 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAA
* *
16659650 AATCCCGAACCGTAAAAAGATTT-AAAAATCGTGAAAAATGGAAAACGAGTTGTCTTGCCATGAA
455 AATCCCGAACCGTAAAAAG-TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
*
16659714 ACTTCACGTGACGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
519 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
16659779 TA-ATAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
584 TAGA-AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * *
16659843 TCTCTTTGGTCGGTGTAGTGCCCTCCTGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCA
648 TCTCTTTGGTCGGCGTAGTGCCCTCCTGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCA
* * * * *
16659908 TACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTATGGCAGCAGGATCGACAACA
713 TACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTACGGCAGCAAGATCGATAGCA
* * **
16659973 CGCAGAGGGTGACCCAACCGATCCCCGGCTTGCGCATCGCGCCCCTCTGGCCGGTTGAGCACCCG
778 CGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCGCGCCCCTCTGGCCGACTGAGCACCCG
* *
16660038 TAC-ATTCGTTTCATGGGTTGACTTAGGCATACGGAGGTCATTCCCAGTCTAA
843 TACGCTT-GTTTCGTGGGTTGACTTAGGCATACGGAGGTCATTCCCAGTCTAA
* * * * *
16660090 GCGTACTTAGCTCATTCCCAGTGTAAGATCAAACCGGACCAAGGGTTGCAGCAGCACATGCTGGG
1 GCATACTGAGTTCATTCCCAGTCTAAGATCAAACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
* * ** *
16660155 CTCAGGCATGTG-TCGGTGTCGTATTTTTCTTCACCAGGGCACCATCGCCGGAGCATCGCCGGAG
66 CTCGGGCATGTGCT-GGTGCCGTATTTTTCTTCGTCGGGGCACCAT--CC-G-G-AT---CGGAG
* * * * *
16660219 AACCTGACCGACAGCATTGAGGTTCTGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATATGC
122 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * * **
16660284 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCACCTATTCCTCATCAAACCTCGAGATTTCACA
187 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
* * * *
16660349 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAACCATTAAAGTGTCTTAAATT
252 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
16660414 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGT
317 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
16660479 GCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
382 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
* * *
16660544 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTG
447 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* *
16660609 CCATGAAACTTCATGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCAT
512 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*** * * *
16660674 TGGCACACAGAAATATGAAGATGTGCCGAAACCCACCCACCACCCTATCGATCCACGGCTTGTGC
577 TGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * * * *
16660739 ATCTCGTCTCTCTGGCCGGCGTAGTGCCCACCCGTCCGCCCGCTCGCTCATTTCGTGGGTTGGCT
642 ATCCCGTCTCTTTGGTCGGCGTAGTGCCCTCCTGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCT
* * * * * *
16660804 TAGGCATACGGAGTTCATTCCTAGTCGAAGATCAGATCAGACCAAGGGTTGCGGTAGCAAGATCG
707 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTACGGCAGCAAGATCG
* * * *
16660869 GTAGCACGCAGAGGGGGACCCGGCCGACCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAG
772 ATAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCGCGCCCCTCTGGCCGACTGAG
* * * * * * *
16660934 CGCCCGCACGCTTGTTTCATAGGTTAACTTAGGCATACGGAGTTCATTCTCAGTCTAA
837 CACCCGTACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGGTCATTCCCAGTCTAA
** * *
16660992 GCATA-TGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCAAGGGTTGGGGCAGCACATGCTGG
1 GCATACT-GAGTTCATTCCCAGTCTAAGATCAAACCGGACCAAGGGTTGCGGCAGCACATGCTGG
*
16661056 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCAT-C-G-TCGGAGAACTTGAC
65 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCCGGATCGGAGAACCTGAC
* * * * *
16661118 CGGCGGCATTGGGGTTCCTG-TGATCGGGGGGGCCGGGGGGCGTGCGCTCATGATGTGCGATTGG
130 CGACGGCATTGGGGTTCC-GACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
16661182 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCT
193 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCT
* * *
16661247 TAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAATAGCCATTAAAGTGTATGAAATGGGGACA
258 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* *
16661312 TTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTTGTGCATG
323 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATG
* ** *
16661377 CCAGCAAAAATACAAGGATCACGTCTACCAAGTTCAGGGCCAAAACTCCTTCT-AAAAAAGTTTA
387 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTA
* * *
16661441 AAAAATCACGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTCCCATG
452 AAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
16661506 AAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGTCATTGGCA
517 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* *
16661571 CGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCC
582 TGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * * * **
16661636 GCCTCTCTGGCCGGCGTAGT-CCC-CGCTAGCCCGCCCGCCCGTTCCTTTCGTTTGTTGGCTTAG
647 GTCTCTTTGGTCGGCGTAGTGCCCTC-CT-GCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAG
* * * * * * * * *
16661699 GCATACAGAGTTCATTCCCAGTCTAAGATTGGATTGAACCAAGGGTTGCAGTAGCAAGATCAACA
710 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTACGGCAGCAAGATCGATA
* * *
16661764 GCACGCTGA-GGGG----GA-C--T---C-GC-T---C--C-CACCCCTCTGGCCGACTGAGCGC
775 GCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCGCGCCCCTCTGGCCGACTGAGCAC
* * * *
16661810 CCGCACGCTCT-TTTCGTGTGTTGACTTAGGCATACGGCGTTCATTCCCAGTCTAA
840 CCGTACGCT-TGTTTCGTGGGTTGACTTAGGCATACGGAGGTCATTCCCAGTCTAA
* ** * *
16661865 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACTGAGTTCATTCCCAGTCTAAGATCAAACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
*
16661930 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCAT-C-G-TCGGAGAACTTGACC
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCCGGATCGGAGAACCTGACC
* * * ** *
16661992 GGCGGCATTAGGGTTCCTG-TGATCGGGGGGGCCGGGGGGCATGCGCTCATGATGTGCGATGGGT
131 GACGGCATTGGGGTTCC-GACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
*
16662056 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTAAGAACTCACACCCCCTT
194 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTT
* * * *
16662121 AAAGAGCATTTGAGATTTTAGAGGTTTGCTACCAGTAGCCATTAATGTGTCTGGAATGGGGACAC
259 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * * *
16662186 CTTTTTCAAATGGTCACAAAATCTTGTTCACTTCGGGTTTTTAGCTAAATTTTTTTGTGCATGCC
324 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* *
16662251 AACAAAAATTCATGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAA
389 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAA
* * * *
16662316 AAATCCCAAACCGTAAAAAGTTTCAAAAATTGTGAAAAATATAAAATGAGTCGTCTTGCCATGAA
454 AAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
*
16662381 ACATCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
519 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
16662433 ATGTCATTCC
Statistics
Matches: 3670, Mismatches: 368, Indels: 191
0.87 0.09 0.05
Matches are distributed among these distances:
871 16 0.00
872 346 0.09
873 639 0.17
874 49 0.01
875 33 0.01
876 84 0.02
877 13 0.00
878 173 0.05
879 3 0.00
880 3 0.00
881 2 0.00
883 2 0.00
884 2 0.00
885 2 0.00
886 1 0.00
887 24 0.01
888 2 0.00
889 2 0.00
890 23 0.01
891 39 0.01
892 504 0.14
893 63 0.02
894 3 0.00
896 2 0.00
897 1 0.00
898 1 0.00
899 183 0.05
900 263 0.07
901 240 0.07
902 502 0.14
903 52 0.01
904 96 0.03
905 285 0.08
906 17 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (894 bp):
GCATACTGAGTTCATTCCCAGTCTAAGATCAAACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCCGGATCGGAGAACCTGACC
GACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAA
ATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTA
GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
CTTTGGTCGGCGTAGTGCCCTCCTGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTACGGCAGCAAGATCGATAGCACGC
AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCGCGCCCCTCTGGCCGACTGAGCACCCGTAC
GCTTGTTTCGTGGGTTGACTTAGGCATACGGAGGTCATTCCCAGTCTAA
Found at i:16661877 original size:26 final size:26
Alignment explanation
Indices: 16661839--16661891 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16661829 GTTGACTTAG
*
16661839 GCATACGGCGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16661865 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16661891 G
1 G
16661892 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16664278 original size:26 final size:26
Alignment explanation
Indices: 16664237--16664288 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16664227 TGGTCTGATG
16664237 TTAGACTAGGAATGAACTCCATATGC
1 TTAGACTAGGAATGAACTCCATATGC
* * *
16664263 TTAGACTGGGATTGAACTCCGTATGC
1 TTAGACTAGGAATGAACTCCATATGC
16664289 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCATATGC
Found at i:16665163 original size:26 final size:26
Alignment explanation
Indices: 16665134--16665186 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16665124 TCGATCTGAT
*
16665134 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16665160 CTTAGACTGGTAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16665186 C
1 C
16665187 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16665947 original size:14 final size:14
Alignment explanation
Indices: 16665928--16665957 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
16665918 CAGGTTCTCC
*
16665928 GATGATGCTCCGAT
1 GATGATGCCCCGAT
16665942 GATGATGCCCCGAT
1 GATGATGCCCCGAT
16665956 GA
1 GA
16665958 AGAAAAATGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.23, C:0.23, G:0.30, T:0.23
Consensus pattern (14 bp):
GATGATGCCCCGAT
Found at i:16667125 original size:16 final size:16
Alignment explanation
Indices: 16667104--16667165 Score: 115
Period size: 16 Copynumber: 3.9 Consensus size: 16
16667094 TGACGAAACA
16667104 AGCGGGCGAGTGGGTG
1 AGCGGGCGAGTGGGTG
16667120 AGCGGGCGAGTGGGTG
1 AGCGGGCGAGTGGGTG
16667136 AGCGGGCGAGTGGGTG
1 AGCGGGCGAGTGGGTG
*
16667152 AGCGGGCGGGTGGG
1 AGCGGGCGAGTGGG
16667166 CACTACGTCG
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
16 45 1.00
ACGTcount: A:0.11, C:0.13, G:0.65, T:0.11
Consensus pattern (16 bp):
AGCGGGCGAGTGGGTG
Found at i:16667849 original size:26 final size:26
Alignment explanation
Indices: 16667813--16667865 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16667803 CTGGTCTGAT
16667813 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
16667839 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
16667865 C
1 C
16667866 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:16668281 original size:896 final size:896
Alignment explanation
Indices: 16663645--16669604 Score: 7087
Period size: 872 Copynumber: 6.7 Consensus size: 896
16663635 NNNNNNNNNN
*
16663645 ACATCTTCATATTTCTACGTTG-CAATGCCATTTTTTATGGCTTTGTAAATTCATACAATGGTCC
1 ACATCTTCATATTTCTGCG-TGCCAATGCCA-TTTTTATGGC-TTGTAAATTCATACAATGGTCC
*
16663709 CTTAAGCC-TCACGTGGAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTTGAA
63 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTTTGAA
** * ** **
16663773 ACTTTTTAATGTTCGGGGA-TCTTTAAAATTTTTTC-AAAGGATTTTTGGATCC-AACTTCTTTA
127 ACTTTTTACGGTTC-GGGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCCAAACTT-GGTA
* * * *
16663835 GGCGAGGATCCTTGTATTTTTGTTGGCATTGCACAAAAAATTTTAAGCTAAAAACGTCGAAGTGC
190 GACG-TGATCCTTGTATTTTTGTTGGCA-TGCACAAAAAA-ATTCAGCTAAAAAC-TCGAAGTG-
16663900 TACAAGAGTTTAT-TGACCA-TTGAAAAAAGTTGTCCCTATTTCAGACACTTTAATGGCTACTGG
250 TACAAGA-TTT-TGTGACCATTTGAAAAAAG-TGTCCCTATTTCAGACACTTTAATGGCTACTGG
* * *
16663963 CAGCAAACCCGTAAAATCTCAAATGCCTCTTTAAGGGGGTGTGAGTTCTCCGAGGTTTGGTGA-G
312 CAGCAAACCTGTAAAATCTCAAATG-CTCTTTAAGGGGGTGTGAGTTCT-CAAGGTTTGATGAGG
* * * *
16664027 GATTAGGGGGCC-ATATAAGGGCCAACTTACCAACA-CCATCGCACATCGTGTGCCCACACCCCC
375 GA-TAGGGGGCCAATATAAGGGCCAA-GTACCAGCACCCATCGCACATCATGTGCGCACA-CCCC
* * * * * * * ** *
16664090 CCGGCCCCCCCGATCATCGGAACCCCAATGCTGTCGATTAGGTTCTGCGGCGATGCTCCGGCGGT
437 CCGG--CCCCCGATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGATGAT
* * * * * * *
16664155 GGTGCCCCGATGAAGAAAAATGTGGCACCAGCTCATTCCTGGGCCCAGCATGTGCTACCACAACC
500 GGTGCCCCGGTGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
* * * * * *
16664220 CTTGGTCTGGTCTGATGTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGATTGAACTCCGT
565 CTCGTTC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* *
16664285 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTTAGCAGGCCAAAGGGGCGGGATGCACA
629 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCAGGCCAGAGGGGCGGGATGCACA
* * * *
16664350 AGCCGGGGATCAGTCGGGTACCCCTCTACGTGCTACCGATCCTACTACCGTAACCCTCGGT-TCA
694 AGCCGGGGATC-GTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTACCGTAACCCTCGGTCT-G
* *
16664414 G-TCTGATCTTAGACTAGGAATGAACTCTGTATGCTTAAGCCAACCGACGAAACGAGCGAG-CGG
757 GCTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG-GCCGG
*
16664477 GCGGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
821 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
16664542 TGGGTTTAGGC
886 TGGGTTTAGGC
* *
16664553 ACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
1 ACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * *
16664618 CAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATATTTGAAACTT
66 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTT
* * * * *** *
16664683 ATTGCGGTTCGGGATCTTTTAAAATTTTTTCGGAAGGATTTTTCATCCCAAACTTGGTAGATGTG
131 TTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCCAAACTTGGTAGACGTG
* * * *
16664748 ATCCTTGTATTTTTATTGGCATGCATAAAAAAAATTC-GCTAAAAACTCAAAGTGTACAAGAATT
196 ATCCTTGTATTTTTGTTGGCATGCA-CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
16664812 TGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
260 TGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
*
16664877 AAATCTCAAATGCTCTTTAAGGGGGTTTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATA
325 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATA
* * ** *
16664942 TAAGGGCCAAGTACCAGCACCCATCGCACATCATATGTGCACACCCCCTAAGCCCCCGATCATCG
390 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CGGCCCCCGATCGTCG
* * * * *
16665007 GAACCTCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCCGGCGAAGAAAT
454 AAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCCGGTGAAGAAAA
* * * * * *
16665072 TTTTGGCACAAGCACATGCCCGAGCCTAGCATGTGCTGCCACAACCCTCGGTTCGATCTGATCTT
519 ATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-GTTCGGTCTGATCTT
* * *
16665137 AGACTGGGAATGAACTCTGTATGCTTAGACTGGTAATGAACTCCGTATGCCTAAGTCAACCCACA
583 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * * * * * * * * * *
16665202 AAATGAGCGGGCAGGTGCTCAGCCGGCCAAAGGGGCGAGATGCGCAAGTCGGGGATAGATCGGGC
648 AAACGAGCGTGCGGGCGCTCAGCAGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCG-TCGGGT
** ** * * ** * *
16665267 CCCCCTCTGTATGCTGTCGATCTTGCTGCCAAAACCCTCGGTCTGG-TCCGATCTTAGACTGGGA
712 CCCCCTCTGCGTGCTACCGATCCTGCTACCGTAACCCTCGGTCTGGCTCTGATCTTAGACTAGGA
* * **
16665331 ATGAACTCCGTATGCCTAAGCCAACCAACGAAATGAGCGGACGGCCGGGCGGGCGGGCACTACAT
777 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA---G-CGGCCGGGCGGGCGGGCACTACGC
* *
16665396 CGACCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGC
838 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* * *
16665455 ACATCTTCATATTTCTACCG-GCCAATGCCATTTTTATGGCTTGTAAATTCATGCAATGGGCCCT
1 ACATCTTCATATTTCT-GCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
** * ** **
16665519 TAAGCCTTCACGTGAAGTTTCCCGGCAAGACGACTCGTTTTCTATTTTTTATAATTTTCAAAACT
65 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
* * * * *
16665584 TTTTACGGTTC----------AGAATTTTTTAG-TAGGAGTTTTGGCCCCAAACCTGGTAGACGT
130 TTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCCAAACTTGGTAGACGT
* *
16665638 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAGTTGAAGTGTACAAGATTT
195 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* * * *
16665703 TTTGTCCTTTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGCCAGCAAACCTGTA
260 TGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* * *
16665768 AAATCTCAAATTCTCTTTAAGGTGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCTAATA
325 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATA
* * * *
16665833 TATGGGCCAACTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCC
390 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG--CCCCCGATCGTC
* * ** * * *
16665898 GAAACCCTAATACCGTCAATCAGGTTCTCCGATGATGCTCCGATGATGATGCCCCGATGAAGAAA
453 GAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCCGGTGAAGAAA
* * *
16665963 AATGCGGCACCAGCACATGACTGAGCCCAGCATGTGCTGCCGCAA-CC-C--TC-G---GA---T
518 AATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGTTCGGTCTGATCTT
* * * *
16666017 ---C---G---G---TCCG-AT-CTTAAACTGGGAATGAACTCCATATGCCTAAGTTAACTCACG
583 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * *
16666068 AAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGGTCAGTCGGGT
648 AAACGAGCGTGCGGGCGCTCAGCAGGCCAGAGGGGCGGGATGCACAAGCCGGGGATC-GTCGGGT
* * *
16666133 CCCCCTCTGCGTGGTGCGGATCCTGCTACCGTAACCCTCGGTCT-GCTCTGATCTTAGACTAGGA
712 CCCCCTCTGCGTGCTACCGATCCTGCTACCGTAACCCTCGGTCTGGCTCTGATCTTAGACTAGGA
** * *
16666197 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGGGGGTGGGCGGGCATTACGCCGGC
777 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCCGGGCGGGCGGGCACTACGCCGGC
* *
16666262 CAGAGAGACAGGATGCGCAAGCCGTGTATCGATAGGGTGGTAGGTGGGTTTAGGC
842 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* * * *
16666317 ACATCTTCATATTTTTGTGTGCCAATGCCATATTTATGGCTTGTAAATTCATACAATGGTTCCTT
1 ACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * * *
16666382 AAGCCTTCACGTGAAGTCTAATGGCAAGACAACTCGTTTTCTATTTTTCATGATTTTTGAAACTT
66 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTT
*
16666447 TTTACGGTTCGGGATTTTTTAAACTTTTTTC-AGAAGGATTTTTGGCCCCAAACTTGGTAGACGT
131 TTTACGGTTCGGGATTTTTTAAAATTTTTTCGA-AAGGATTTTTGGCCCCAAACTTGGTAGACGT
** ** *
16666511 GATCCTAATATTTTTGTTGGCATGCACAAAAAAATTCAAATAAAAACTCGAAGTGTACACGATTT
195 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
*
16666576 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
260 TGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* * *
16666641 AAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTCTC-GGGTTTGATGAGGGATTGGGGGCCAATA
325 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATA
*
16666705 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCGGCCCCCTCGATCGTC
390 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCC-CGATCGTC
* * * * * * * *
16666770 GGAACCTCAATGCCGTCAGTCAGGTTCTCCGATGATGCTCCGGTGATAGTGCCCCGGTTAAAAAA
453 GAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCCGGTGAAGAAA
**
16666835 AATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTAACGCAA-CC-C--TC-G---G-TC--
518 AATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGTTCGGTCTGATCTT
* *
16666889 ---C---G---G---TCC-AAT-CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACG
583 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * * * *
16666940 AAATGAACGTGCGGGCGTTTAGCCA-GCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTCGGG
648 AAACGAGCGTGCGGGCGCTCAG-CAGGCCAGAGGGGCGGGATGCACAAGCCGGGGATC-GTCGGG
** * * *** *
16667004 TCCCCCTCTGCGTGCTGTCAATCCTGCTACCGTAACCCTTGGT-TCAATCTGATCTTAGACTGGG
711 TCCCCCTCTGCGTGCTACCGATCCTGCTACCGTAACCCTCGGTCTGGCTCTGATCTTAGACTAGG
*
16667068 AATGAACTCCGTATGCCTAAGCCAACTGACGAAACAAGCGGGCGAGTGGGTGAGCGGGCGAGTGG
776 AATGAACTCCGTATGCCTAAGCCAACCGACG--A-AA-----C--------GA----GC------
* * *
16667133 GTGAGCGGGCGAGTGGGTGAGCGGGCGGGTGGGCACTACGTCGGCCAGACAGACGGGATGTGCAA
815 --G-GC---C------G-G-GCGGGC----GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
*
16667198 GCCGTAGATCGATAGGGTGGTAGGTGGGTTTAGGC
862 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* *
16667233 ACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGTTTGTAAATTCATACAATGGTCCCTT
1 ACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* **
16667298 AAGCCTTCACGCGGCGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTT
66 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTT
* * * *
16667363 TTTGA-TGTTCAGGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCTCCAAACTTGGTAGACGA
131 TTT-ACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCCAAACTTGGTAGACGT
* * *
16667427 GATCCTTGTATTTTTGTTGGCTTGCGCAAAAAAATTCAGCTAAAAACTCGAAGTGTTCAAGATTT
195 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
*
16667492 AGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
260 TGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
16667557 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATA
325 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATA
*
16667622 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCTATCGTCGA
390 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCGATCGTCGA
* * * * **
16667687 AACCCCAATGCCGTCGGTCAAGTTCTCCGGCAATGCTCCGAAGATGGTGCCCCGACGAAGAAAAA
455 AACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCCGGTGAAGAAAAA
* * * * *
16667752 TGTGGCACCAGCGCATGCTCGAGCCTAGCATGTGCTACCGTAACCCTCGTTCTGGTCTGATCTTA
520 TGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGTTC-GGTCTGATCTTA
*
16667817 GACTGGGAATAAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
584 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* ** * * * * **
16667882 AACGAGCGTGTGGATGCTTAGCAGGCCAGAGGGGCGGGATGCTCAAGCCAGGGATCGGCTTGTCC
649 AACGAGCGTGCGGGCGCTCAGCAGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGTCGGGTCC
** ** * * ** *
16667947 TTCTCTATGTGCTACCGATCCTGCTACTGCAACCCTCAATCTGGCTC-GATCTTAGACTGGGAAT
714 CCCTCTGCGTGCTACCGATCCTGCTACCGTAACCCTCGGTCTGGCTCTGATCTTAGACTAGGAAT
* * **
16668011 GAACTCCGTATGCCTAAGACAACCGACGAAACGAGCGTCCGGGCGGGCGGGCACTACATCGGCCA
779 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCCGGGCGGGCGGGCACTACGCCGGCCA
*
16668076 GAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGC
844 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* * *
16668129 ACATCTTCATATTTCGGCATGCCAATGCCATTTTTGTGGCTTGTAAATTCATACAATGGTCCCTT
1 ACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * * *
16668194 AAGCCTTCACCTGAAGTTTCATGGCAACACGACTCATTTTCTATTTTTCACAATTTTTGAAACTT
66 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTT
* * ** **
16668259 TTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCAAAAACTTGGTAGAAATG
131 TTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCCAAACTTGGTAGACGTG
* * * *
16668324 ATCCTTGTAGTTTTT-TGGGGATGCACATAAAAATTCAGCTAAAAACTCGAAGCGTACAAGATTT
196 ATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* * * * *
16668388 TGTGACCTTTTGAAAAAAATGTCCCCATTTAAGACACTTTAATGGCTATTGGCAGCAAACCTGTA
260 TGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
*
16668453 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTGC-AGGTTTGATGAGGGATAGGAGGCCAAT
325 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT-CAAGGTTTGATGAGGGATAGGGGGCCAAT
* * * * *
16668517 ATAAGGGCCAAGTAGCAGCACCCATCGCACATCATGTGCGCACACCCCTCAGCCCCCCCAATCGC
389 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCG-GCCCCCGATCGT
* *
16668582 CGAAACCCTAATG-CGCCGGTCAGGTTCT-C--CGA-----C---GATGGTGCCCCGGTGAAGAA
452 CGAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCCGGTGAAGAA
* * *
16668635 AAATGTGGACACCAGCACAAGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCTGTCCGGTCTGAT
517 AAATGTGG-CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-GTTCGGTCTGAT
* * *
16668700 CTTAGACTCGGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCC
580 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * ** **
16668765 ACGAAACGAACGTGCGGGCGCTCAGCTGACCAGAGGGGCGACATGTGCAAGCCGGGGATCGATCG
645 ACGAAACGAGCGTGCGGGCGCTCAGCAGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCG-TCG
* * ** * * * *
16668830 GGTCCCCCTCTGCATGCTACCGATCTTGCTGTCGCAACCCTCGATC-CGATCTGATCTTAGACTA
709 GGTCCCCCTCTGCGTGCTACCGATCCTGCTACCGTAACCCTCGGTCTGGCTCTGATCTTAGACTA
*
16668894 GGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGA--------GCGGGCGGGCACTACGCC
774 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCCGGGCGGGCGGGCACTACGCC
** * * *
16668951 GGATAGAGAGACGGGATTCGCAAGCTGTGGATCGATAGGGTGCTAGGTGGGTTTAGGC
839 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* * *
16669009 ACATCTTCATATTTCTGCGTGCCAATGCCATTTTGATGGCTTGTAAATTCATAGAATGATCCCTT
1 ACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
*
16669074 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGATACTT
66 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTT
** *
16669139 TTTA-------AAATTTTTTAAAATTTTTTC-AGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
131 TTTACGGTTCGGGATTTTTTAAAATTTTTTCGA-AAGGATTTTTGGCCCCAAACTTGGTAGACGT
* * * *
16669196 GATCCTTGTATTTTTTTTGGCATGCACAAAAAAAGTCAGCTAAAAACTCGATGTGTACAACATTT
195 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* * *
16669261 TGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACGGGCAGCAAACCTGTA
260 TGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
16669326 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTT-ATGAGGGATAGGGGGCCAATA
325 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATA
*
16669390 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCCCGATCGTC
390 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCG-GCCCCCGATCGTC
* *
16669455 GAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCCCGGCGAAGAAA
453 GAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCCGGTGAAGAAA
* * * * *
16669520 AATGTGGCTCCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGATCTGATC-AATCT
518 AATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGTTC-GGTCTGATCT
16669584 TAGACTGGGAATGAACTCCGT
582 TAGACTGGGAATGAACTCCGT
16669605 CTGCCTAAGA
Statistics
Matches: 4362, Mismatches: 544, Indels: 318
0.83 0.10 0.06
Matches are distributed among these distances:
861 1 0.00
862 195 0.04
863 1 0.00
865 1 0.00
866 174 0.04
867 3 0.00
868 3 0.00
871 7 0.00
872 462 0.11
873 397 0.09
874 3 0.00
875 2 0.00
876 3 0.00
877 1 0.00
880 193 0.04
881 1 0.00
882 25 0.01
883 44 0.01
884 27 0.01
886 26 0.01
887 159 0.04
888 89 0.02
889 1 0.00
890 12 0.00
891 239 0.05
892 112 0.03
894 2 0.00
895 1 0.00
896 455 0.10
897 22 0.01
898 325 0.07
899 36 0.01
900 66 0.02
901 69 0.02
902 217 0.05
903 8 0.00
904 9 0.00
905 10 0.00
906 87 0.02
907 73 0.02
908 30 0.01
910 1 0.00
911 2 0.00
912 6 0.00
915 98 0.02
916 396 0.09
917 79 0.02
919 2 0.00
920 2 0.00
921 1 0.00
924 3 0.00
925 2 0.00
930 1 0.00
932 1 0.00
933 1 0.00
937 2 0.00
938 1 0.00
939 3 0.00
940 81 0.02
941 89 0.02
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (896 bp):
ACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTT
TTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCCAAACTTGGTAGACGTG
ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
GTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATAT
AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCGATCGTCGAA
ACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCCGGTGAAGAAAAAT
GTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGTTCGGTCTGATCTTAGA
CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
CGAGCGTGCGGGCGCTCAGCAGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGTCGGGTCCCC
CTCTGCGTGCTACCGATCCTGCTACCGTAACCCTCGGTCTGGCTCTGATCTTAGACTAGGAATGA
ACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCCGGGCGGGCGGGCACTACGCCGGCCAGA
GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
Found at i:16668738 original size:26 final size:26
Alignment explanation
Indices: 16668700--16668752 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16668690 CCGGTCTGAT
*
16668700 CTTAGACTCGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
16668726 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
16668752 C
1 C
16668753 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:16669150 original size:10 final size:10
Alignment explanation
Indices: 16669137--16669161 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
16669127 TTTTTGATAC
16669137 TTTTTAAAAT
1 TTTTTAAAAT
16669147 TTTTTAAAAT
1 TTTTTAAAAT
16669157 TTTTT
1 TTTTT
16669162 CAGAAGGAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (10 bp):
TTTTTAAAAT
Found at i:16670653 original size:717 final size:713
Alignment explanation
Indices: 16668863--16670867 Score: 3035
Period size: 712 Copynumber: 2.8 Consensus size: 713
16668853 TCTTGCTGTC
* * * * * *
16668863 GCAACCCTCGATCCGATCTGATCTTAGACTAGGAATGAACTTCGTATGCCTAAGCCAACCGACGA
1 GCAACCCTCGATCAGATC-AATCTTAGACTGGGAATGAACTCCGTATGCATAAGACAACCGACGA
** * * *
16668928 AACGA--------GCGGGCGGGCACTACGCCGGATAGAGAGACGGGATTCGCAAGCTGTGGATCG
65 AACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCG
* * *
16668985 ATAGGGTGCTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTGATGGCT
130 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
* *
16669050 TGTAAATTCATAGAATGATCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
195 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * * *
16669115 TATTTTTCACGATTTTTGATAC-TTTT-TA-----AAATTTTTTAAAATTTTTTCAGAAGGAGTT
260 TATTTTTCACGATTTTTGAAACTTTTTGTAGTTCGAGATTTTTTAAAATTTTTTCGGAAGAAGTT
* *
16669173 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAGTCAGCTA
325 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTA
* * * *
16669238 AAAACTCGATGTGTACAACATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAA
390 AAAATTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
*
16669303 TGGCTACGGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTT
455 TGGCTACAGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTT
16669368 T-ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
520 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * * *
16669432 ACCCCCCCGACCCCCCGATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCG
585 ACCCCCCAGACCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCC
* * * *
16669497 GTGATGGTGCCCCGGCGAAGAAAAATGTGGCTCCAGCACATGCCCGAGCCCAGCATGTGCTGCT
650 GCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCT
* * *
16669561 GCAACCCTCGATCTGATCAATCTTAGACTGGGAATGAACTCCGTCTGCCTAAGACAACCGACGAA
1 GCAACCCTCGATCAGATCAATCTTAGACTGGGAATGAACTCCGTATGCATAAGACAACCGACGAA
* * * * * *
16669626 ACGAGCGGGCTGACGGGCGGGCACTACGCCGGCCAAAAAGATGGGATGCACAAGCCGTTGATCGA
66 ACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGA
* *
16669691 TTGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATCCCATTTTTATGGCTT
131 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
* * * *
16669756 GTAAATTCATACAATGGTCCCTCAATCCTTCACGTGAAGTTTCATGGCAGGACGACTCATTTTCT
196 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* ** * * *
16669821 ATTTTTCACGATTTTTGAAAATTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAA-AGCGTT
261 ATTTTTCACGATTTTTGAAACTTTTTGTAGTTCGAGATTTTTTAAAATTTTTTCGGAAGA-AGTT
* *
16669885 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGAATGCACAAAAAAATTCAGCTA
325 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTA
16669950 AAAATTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
390 AAAATTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* *
16670015 TGGCTACAGACAGCAAACCTGTAAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTT
455 TGGCTACAGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTT
16670080 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
520 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
*
16670145 ACCCCCCAG-CCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCC
585 ACCCCCCAGACCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCC
*
16670209 GCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCT
650 GCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCT
* * * * * * *
16670273 GCAACCCTTGGTCCAG-TCTGATCTTAGATTGGGAATGAACTTCGTATGCATAAGCCAACCGATG
1 GCAACCCTCGAT-CAGATC-AATCTTAGACTGGGAATGAACTCCGTATGCATAAGACAACCGACG
* *
16670337 AAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCTCAAGCCGTG
64 AAACGA----GCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTG
*
16670402 GATCGATAGGGTGGTAGGTGGGTTTCGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
125 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
* *
16670467 TGGCTTTTAAATTCATACAATGGTCCCTTAGGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
190 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
*
16670532 TTTTCTATTTTTCATGATTTTTGAAACTTTTTGTAGTTCGAGATTTTTTAAAATTTTTTCGGAAG
255 TTTTCTATTTTTCACGATTTTTGAAACTTTTTGTAGTTCGAGATTTTTTAAAATTTTTTCGGAAG
* *
16670597 AAGTTTTGGCCCCAAACTTGGTAGACATGATCGTTGTATTTTTGTTGGCATGCACAAAAAAAAAT
320 AAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAAAT
*
16670662 CAGCTAAAAACTT-GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGAC
384 CAGCTAAAAA-TTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
*
16670726 ACTTTAATGGCTACTGGCA-CGAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
448 ACTTTAATGGCTACAGGCAGC-AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
*
16670790 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
512 TCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
*
16670855 GTGTGCACACCCC
577 GTGCGCACACCCC
16670868 ACCCGGTGCC
Statistics
Matches: 1179, Mismatches: 101, Indels: 34
0.90 0.08 0.03
Matches are distributed among these distances:
697 46 0.04
698 17 0.01
705 181 0.15
706 4 0.00
712 331 0.28
713 117 0.10
717 277 0.23
718 204 0.17
719 2 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (713 bp):
GCAACCCTCGATCAGATCAATCTTAGACTGGGAATGAACTCCGTATGCATAAGACAACCGACGAA
ACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGA
TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
ATTTTTCACGATTTTTGAAACTTTTTGTAGTTCGAGATTTTTTAAAATTTTTTCGGAAGAAGTTT
TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAA
AAATTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
GGCTACAGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTT
GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
CCCCCCAGACCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCCG
CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCT
Found at i:16672820 original size:721 final size:716
Alignment explanation
Indices: 16671112--16675453 Score: 5463
Period size: 718 Copynumber: 6.1 Consensus size: 716
16671102 CCTGCTGCCA
* * * * * * *
16671112 CAACCCTCGATTCGGTCCGATCTTAGACTGGGAATGAACTCCATTTGCCTAGGTCAACCGACGAA
1 CAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * *
16671177 A------CGAGTGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGGTGCGCAAGCCGTGGATC
66 ACGCGGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
* * ** *
16671236 G-TAAGGGTGGTAGGTGGGCTTAGGCACATCTTCATATTTATGTGTTCCAATGCCATTTTTATGG
131 GAT-AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGG
16671300 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATC-TGAAGTTTCATGGCAAGACGACTCGTT
195 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA-CGTGAAGTTTCATGGCAAGACGACTCGTT
** * *
16671364 TTCTATTTTTCACGATTTTCCAGAACCTTTTACGGTTC-GGA-TTTTTAAAATTTTTTTGG-AGG
259 TTCTATTTTTCACGATTTTTGA-AACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
* ** *
16671426 ATTTTTTGGCCCCAAAACTTTTTAGGATGTGATCCTTTGTATTTTTATTGGCATTTGCACAAAAA
323 A-GTTTTGGCCCC-AAACTTGGTA-GACGTGATCC-TTGTATTTTT-TTGGCA--TGCAC---AA
* *
16671491 AAAAATTCTGCTAAAAAACTCGAAGAGT-TACAAGATTTGTGTGACCATGTTAAAAAAAGTGTCC
378 AAAAATTCAGCT-AAAAACTCGAA-AGTGTACAAGATTT-TGTGACCAT-TTGAAAAAAGTGTCC
16671555 CCATTTCAGACACGTTTAATTGGCTACTGGCAGC-AACCTGTAAAAATCTCAAATGCTCTTTTTA
439 CCATTTCAGACAC-TTTAA-TGGCTACTGGCAGCAAACCTGT-AAAATCTCAAATGCTC--TTTA
*
16671619 ATGGGGGTGTGAGTTCTCGA-GTTTGATGAGGGATTAGGGGGCCAATAGTAA-GGCCAAGTACTA
499 A-GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA-TAGGGGGCCAATA-TAAGGGCCAAGTACCA
** * * *
16671682 GCACCCATCGCACATCATGTGCGCACACCCCGCCCGGTGCCCCCGATTGCCGGAACCCTAATGCC
561 GCACCCATCGCACATCATGTGCGCACA-CCC-CCCGGCCCCCCCGATCGTCGGAACCCCAATGCC
* * * *
16671747 GCCGGACAAGTTCTCCT-GTGATGCTCCGACGATGGTGCCCCGACGAAGAATAATGCGGCTCCAG
624 GCCGGTCAGGTTCT-CTGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAG
*
16671811 CACATGCCCGGGCCCAGCATGTGCTG-TCG
688 CACATGCCCGAGCCCAGCATGTGCTGCT-G
* * * * * * * *
16671840 TAACCCTCGATCTGGT-TGATCTGAGACTAGGAATGATCTCCGTCTGCCTAAGCCAACCAACGAA
1 CAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
*** * *
16671904 A--C-GAATGGC---TGGGCGGGCACTACGTCGGCCAGAAAGACGGGATGCGCAAGCCGTGGATC
66 ACGCGGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
* * ** **
16671963 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCGTATTCCTGTGTGCCAATGTTATTTTTATGGC
131 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGC
*
16672028 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTCCATGGCAAGACGACTCGTTTT
196 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
*
16672093 CTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGT
261 CTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGT
* *
16672158 TTTGGCCCC-AACTTGGTAGACGTGATTCTTGTATTTTTGTTGGCATGCACAAAAAAATTAAGCT
326 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCT
* * *
16672222 AAAAATTC-AAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGATACTTT
390 AAAAACTCGAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* * * *
16672286 AATGGTTACTGGCACCAAACCTGTAAAATCTCAAATGTTCTTTATGGGGGTGTGAGTTCTCGAGG
455 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* * * *
16672351 TTTGATGAAGGACAGGGGACCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGC
520 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
*
16672416 ACACCCTCCCGG-CCCCCCGGTCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGGTGATGCT
585 ACACCC-CCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGGTGATGCT
* * * * * *
16672480 CCGACGATGGTGCCCCGATGAAGAAAAATGTGTCACCAGCAAATGCCCGAGCCCAACATGTGCCG
649 CCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
*
16672545 CCG
714 CTG
* * **
16672548 TAACCCTCTGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATAAA
1 CAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * **
16672613 ACGTGCGGGCGGCGGGCGGGCGGGCGGGTACTAAGCCGGCCAGAGAGACGGGATGCAAAAGCCGT
66 AC--GC--G-GGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGT
* * *
16672678 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATGTTT
126 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCAT-TTT
* *
16672743 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCGTCACGTGAAGTTGCATGGCAAGACGACT
190 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * * * *
16672808 CGTTTTCTATTTTTCACGA-ATTTCAAAATGTTTTGCGGTTCGGGA-TTTTTAAAATTTTTTTGA
255 CGTTTTCTATTTTTCACGATTTTTGAAACT-TTTTACGGTTCGGGATTTTTTAAAATTTTTTCGG
* * * * *
16672871 AAGCAGTTTTGGCGCCAAAATTGGTAGAGGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAT
319 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAA
* * * *
16672936 TTCAGCTAAAAACACGAAA-TGTACAAGATTTTATGACAATTTGAAAAAAGTGTCCCCATTTTAG
383 TTCAGCTAAAAACTCGAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
16673000 ACACTTTAATGGCTACTGGTAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
448 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * * * *
16673065 CTCAACGTTTGATGACGGATAAGGGGCCAATATAATGGCCAAGTACCAGCACCCATCGCACATCA
513 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* ** * * * * *
16673130 TGTGCGCACACCCCCCGGCCCCCCCAATCACCGGAACACCAATGCCGTCAGTCGGGTTCTCCGGT
578 TGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGGT
* * * *
16673195 GATGCTCCGACGATGGTGCCCCAACGAAGAAAAATACGGCTCCAGCACATGCCCGAGCCTAGCAT
643 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
*
16673260 GTGCTACTG
708 GTGCTGCTG
* * * * *
16673269 CAACCCTCAGTCCGGTCCGATCTTAGGCTGGGAATGAACTACGTATGCCTAAGCTAACCGACGAA
1 CAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
** * * * *
16673334 ACAAGCGGAAGGGCGAGCGGGCGGGCACTATGTCGGTCAGAGAGACAGGATGCGCAAGCCGTGGA
66 AC--GCGGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
*
16673399 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAGTGCCATTTTTATG
129 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATG
*
16673464 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACTTGAAGTTTCATGGCAAGACGACTCGTT
194 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * * * * * *
16673529 TTCTAATTTTCATGATTTTTGAAACTTTTTGCAGTTCGGGATTTTTTAAAACTTTTTCGGAAAGC
259 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA
* * *
16673594 GTTTTTGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTTCTGGCATGCACAAAAATATTCAG
324 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTT-TGGCATGCACAAAAAAATTCAG
*
16673659 CTAAAAACTCG-AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTCAGACACT
388 CTAAAAACTCGAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * *
16673723 TTAATGGCTACTGGCAGCAAACCTGTAAAATATCAAATGCTCTTTAAAGGGTTGTGAGTTCTCGA
453 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
*
16673788 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCATGTACCAGCACCCATCGCACATCATGTGC
518 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* *
16673853 GCACACCCCCTGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGTGATGC
583 GCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGGTGATGC
* * * * * **
16673918 TCTGGCGATGGTGCCCCGACGAAGAAAAATACGACACTAGCACATGCTTGAGCCCAGCATGTGCT
648 TCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
*
16673983 GCAG
713 GCTG
* * * * ** *
16673987 CAACCCTCGGTCCAGTCCGATCTTAGACTGGAAATGAACTTCGTATGCCTAAGTGAACCGACAAA
1 CAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* *
16674052 ACGAACAGGTGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
66 ACG--CGGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
*
16674117 TCGATAGGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTACGTGCCAATGCCATTTTTATG
129 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATG
* * * *
16674182 GCATT-TAAATTCATACAATTGTCCCTTAAGCCATCACGTTAAGTTTCATGGCAAGACGACTCCT
194 GC-TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * *
16674246 TTTCTATTTTTCACGATTTTTGAAACTTTTCATGGTTCGGGATTTGTTTAAAATTTTTTCAGAAA
258 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTT-TTTAAAATTTTTTC-GGAA
* * * **
16674311 GG-GTTTTGACCCCAAACTTTGTAGACGTGATCCTCGTATTTTTTGTGGCATGCGTAAAAAAATT
321 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTT-TGGCATGCACAAAAAAATT
*
16674375 CAGCTAAAAGCTCGAAA-TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
385 CAGCTAAAAACTCGAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * * *
16674439 ACTTTAATGGCTATTGGCAGCAAACTTGTAAAATCTCAAATGCTTTTTAAGGGGGCGTGAGTTCT
450 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * * * * *
16674504 CGAGGTTTGATGAGGAGATAGGTGGCAAATGTAAGCGCCAAGTACCAGCACCAATCTCACATCAT
515 CGAGGTTTGATGAGG-GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * **
16674569 GTGCGCACACCAACCCCGGTCCCCCCGATCGTCGGAACCCCAATGCCGTCGATCAAGTTCTCCAG
579 GTGCGCACACC--CCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGG
* **
16674634 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATTTGGCACCAGCACATGCCCGAGCCCAGCA
642 TGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
16674699 TGTGCTGCTG
707 TGTGCTGCTG
* * * * * *
16674709 CAACCCTTGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCATATGCCAAAGCCAACCGATGAA
1 CAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * * * * **
16674774 ACGAATGGGCGGACGGGCGGGCGGTCATTACGCCGGCCAGAGAAACGGGATGTACAAGCCGTGGA
66 ACG--CGGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
*
16674839 TCGATAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATG
129 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATG
* *
16674904 ACTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTT
194 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
**** * *
16674969 TTCTATTTTTTTTTATTTTTGAAACGTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGA
259 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA
* * * * *
16675034 ATTTTGGCCCCAAACTTGGTAGACGTGAT-CTCGTATTTTTGTTGGCATGCAAAAAAAAAATCAA
324 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAG
* * *
16675098 ATAAAAAATTG-AAGTGTAC-A-A------G---ATTT--------TGTCCCCATTTCAGACACT
388 CTAAAAACTCGAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * * *
16675143 TTAATGGCTACTGGCAGCAAACCAGTAAAATGTCAATTGCTCTTTAGGGGGGTGTGAGTTCTCGA
453 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* *
16675208 GGTTTGATGACGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGC
518 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * * * **
16675273 GGACACCCCTCGGCCCCCCCGATCG-CTGGAACCCCAATGCTGCCAGTCAGGTTCACTGACGATG
583 GCACACCCCCCGGCCCCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCTCTGGTGATG
* * *
16675337 CTCCGGCGATGGTGCCCC-AGCGAAGAAAAATGCGACACCAGCACATGCCCAAGCCCAGCATGTG
647 CTCCGACGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
*
16675401 TTGCTG
711 CTGCTG
16675407 CAACCC-CGGTCCGGT-TCGATCTTAGACTGGGAATGAACTCCGTATGC
1 CAACCCTCGGTCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGC
16675454 TTAGACTAGG
Statistics
Matches: 3166, Mismatches: 397, Indels: 133
0.86 0.11 0.04
Matches are distributed among these distances:
696 1 0.00
697 37 0.01
698 112 0.04
700 52 0.02
701 87 0.03
707 2 0.00
708 112 0.04
709 57 0.02
710 66 0.02
711 16 0.01
712 1 0.00
713 28 0.01
714 12 0.00
715 25 0.01
716 13 0.00
717 115 0.04
718 750 0.24
719 216 0.07
720 239 0.08
721 527 0.17
722 381 0.12
724 16 0.01
725 8 0.00
726 22 0.01
727 225 0.07
728 41 0.01
729 4 0.00
730 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (716 bp):
CAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
ACGCGGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGC
TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
CTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGT
TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTA
AAAACTCGAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
CACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGGTGATGCTCC
GACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCT
G
Found at i:16678676 original size:26 final size:26
Alignment explanation
Indices: 16678638--16678687 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
16678628 CTGGTCTGAT
*
16678638 CTTAGACTGGGAACGAACTCCGTAAG
1 CTTAGACTAGGAACGAACTCCGTAAG
*
16678664 CTTAGACTAGGAATGAACTCCGTA
1 CTTAGACTAGGAACGAACTCCGTA
16678688 TGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.32, C:0.22, G:0.24, T:0.22
Consensus pattern (26 bp):
CTTAGACTAGGAACGAACTCCGTAAG
Found at i:16679581 original size:26 final size:26
Alignment explanation
Indices: 16679545--16679594 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
16679535 GTTCGATCTT
16679545 AGACTGGGAATGAACTCCGTATGCTG
1 AGACTGGGAATGAACTCCGTATGCTG
16679571 AGACTGGGAATGAACTCCGTATGC
1 AGACTGGGAATGAACTCCGTATGC
16679595 CTCAGTCAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTG
Found at i:16681727 original size:159 final size:157
Alignment explanation
Indices: 16681436--16681734 Score: 366
Period size: 159 Copynumber: 1.9 Consensus size: 157
16681426 GCCCAGCATG
*
16681436 TGCTGCCGCAACCCTCGGTCCGATCCTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
1 TGCTGCCGCAACCCTCGGTCCGATCCTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
16681501 CCCACGGAACGAGCGTACGGTGGCTCAGCCGGCCAGAGTGGTGGGATGCGCAATCCGGGGATCGA
66 CCCACGAAACGAGCGGACGGGGGCACAGCCGGCCAGAGAGATGGGATGCGCAAGCC--GGATCGA
16681566 TCGGGTCCCCCACTGCGTGCTGCCAATCC
129 TCGGGTCCCCCACTGCGTGCTGCCAATCC
* * * *
16681595 TGCTGCTGCAACCCTCGGTCTGGT-CTAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCA
1 TGCTGCCGCAACCCTCGGTCCGATCCT-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
16681659 ACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGATGGGATGCGTAAGCCGTGG
65 ACCCACGAAACGAGCGGAC-GG-GGGCAC-A-GCCGGCCAGAGAGATGGGATGCGCAAGCC--GG
*
16681724 ATCGATAGGGT
124 ATCGATCGGGT
16681735 GGTAGGTGGG
Statistics
Matches: 118, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
158 2 0.02
159 71 0.60
160 2 0.02
161 4 0.03
162 1 0.01
163 38 0.32
ACGTcount: A:0.21, C:0.29, G:0.31, T:0.19
Consensus pattern (157 bp):
TGCTGCCGCAACCCTCGGTCCGATCCTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCCACGAAACGAGCGGACGGGGGCACAGCCGGCCAGAGAGATGGGATGCGCAAGCCGGATCGATC
GGGTCCCCCACTGCGTGCTGCCAATCC
Found at i:16682708 original size:184 final size:186
Alignment explanation
Indices: 16682327--16682723 Score: 444
Period size: 184 Copynumber: 2.2 Consensus size: 186
16682317 CCCTCGGTCT
* * *
16682327 GATCCGATCTTAGACTAGGAATGAACTCTGTATGCTTGGACTAGCAATCAACTCAGTATGCGTAA
1 GATCCGATCTTAGACTGGGAATGAACTCTCTATGCTTAGACTAGCAATCAACTCAGTATGCGTAA
* * ** * **
16682392 GTCAACCCACGAAACGAGCGTGCGGGCGCTTAGCTTGCCAGAGGGGTGAGATGCGCAAGCCGGGG
66 GTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCAGCCAGAGGGGCGAGATGCGCAAGCCAAGG
* * * * * **
16682457 ATCGGTCGGGTCACACTTTGTGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCCG
131 ATCGGTCGGGTCACACTCTATGTGCTGCCGATCCTACTACCACAACCCTCAATCCG
* * * * * *
16682513 GA-CCAATCTTAGACTGGGAAGGAACT-TCTATGCTTAGACTGGGAATGAACTCTGTATGCCG-A
1 GATCCGATCTTAGACTGGGAATGAACTCTCTATGCTTAGACTAGCAATCAACTCAGTATG-CGTA
* * *
16682575 AGTCAACCCACGAACCGAGCATGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGTGCAAGCCAAG
65 AGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCAGCCAGAGGGGCGAGATGCGCAAGCCAAG
* * * * *
16682640 GATCGG-CTGGGTCCCCCTCTATGTGCTGCCGATCCTACTGCCATAACCTTCAATCC-
130 GATCGGTC-GGGTCACACTCTATGTGCTGCCGATCCTACTACCACAACCCTCAATCCG
* *
16682696 GATCTGATCTTAGATTGGGAATGAACTC
1 GATCCGATCTTAGACTGGGAATGAACTC
16682724 CGTATGCCTA
Statistics
Matches: 172, Mismatches: 35, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
183 3 0.02
184 144 0.84
185 23 0.13
186 2 0.01
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.22
Consensus pattern (186 bp):
GATCCGATCTTAGACTGGGAATGAACTCTCTATGCTTAGACTAGCAATCAACTCAGTATGCGTAA
GTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCAGCCAGAGGGGCGAGATGCGCAAGCCAAGG
ATCGGTCGGGTCACACTCTATGTGCTGCCGATCCTACTACCACAACCCTCAATCCG
Found at i:16684290 original size:26 final size:26
Alignment explanation
Indices: 16684261--16684313 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16684251 CCGGTCTGAT
16684261 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
16684287 CTTAGGCTGGGAGTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16684313 C
1 C
16684314 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16685168 original size:901 final size:879
Alignment explanation
Indices: 16682747--16685212 Score: 2919
Period size: 901 Copynumber: 2.8 Consensus size: 879
16682737 CAATCGATAA
* * * * * *
16682747 ACCGGCCAGAGAGACGGGATGCTCATGTCGTGGATCGATAAAGTGGTAGGCGAGTTTAGGCACAT
1 ACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGAGTGGTAGGTGGGTTTAGGCACAT
*** * * *
16682812 CTTCATATTTCTATGTGCCAAAGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
66 CTTCATATTTCTGCATGCCAATGCCATTTTTATAGCTTGTAAATTCACACAATGGTCCCTTAAGC
* * * * *
16682877 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTGATGATTTTTGAAACTTTTTG
131 CTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTGGAAACTTTTTA
* *** * * * * * * *
16682942 TGGTTCAAAATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGTCCCAAACTTGGTAGACGTGATCC
196 CGGTTCGGGATTTTTTAAAATTTTTTCAAAAGAAGTGTTAGCCCCAAACATGGTAAACGTGATCC
** * * * ** *
16683007 TTGTATCCTTGTTGGCGTACACAAAAAAATTCAATTAAAAACTCGAAGTGTACAAGATTTTGTGA
261 TTGTATTTTTGTTGACATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGA
* * * **
16683072 CTATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
326 CAATGTGAAAAAAGTGCCCCCATTTCAAACACTTTAATGGCTACCAGCAGCAAACCTGTAAAATC
* * * * *
16683137 TCAAATGCTCTTTATGGGGGTGTGAGTTCTCAAGGTTTGATGACGGATA-GGGGCCAATATAAGG
391 TCAAATGCTCTTTAAGGGGGTGTCAGTTCACAAGGTTTGATGAGGGACAGGGGGCCAATATAAGG
* * * * * * *
16683201 GCCAAGTACCAGTACCCATCACACATCATGTGCGCA-CACCCCCCTGGCCCCCCCGATCACCGGA
456 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACCACCCCCCCGACCCCCCCAATCGCCAGA
* * *
16683265 ACCCCAATGCCGCTGGTCAGGTTCTCTGGCGATGCTCCGACGATTGTGCCCCGACGAAGAAAAAT
521 ACCCAAAT----C--GTCA-GTTC-C--G-GA----CC-A--ATGGTCCCCCGACGAAGAAAAAT
* * ** * *
16683330 ACAGTGCCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAA-CC-C--T-C-G---G-TC----
568 GCCGCACCAGCACATGCCCAAGCCCAGCATGTGCCACCGCAACCCTCAGTCCGGTCTGATCTTAG
*
16683381 -C-------G-A-TCC-TAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
633 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAA
* * * *
16683434 ACGAGCGTGCGGTGGCTTAGCCGGCCAGAGTGGTGGGATGCGCAATCTGGGGATCGATCGGGTCC
698 ACGAGCGTGCGGTGGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGATCGGGTCC
* *
16683499 CCCACTGCGTGCTGCCAATCCTGCTGCTGCAACCCTCGGTCTGGTCTAATCTTAGACTGGGAATG
763 CCCACTACGTGCTGCCAATCCTACTGCTGCAACCCTCGGTCTGGTCTAATCTTAGACTGGGAATG
* * * *
16683564 AACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTAC
828 AACTCCGGATGCCTAAGCCAACCGACGAAACAAACGGGCGGGCGGGCACTAC
* * * *
16683616 GCCGGCCAGAGAGATGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
1 ACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGAGTGGTAGGTGGGTTTAGGCACAT
16683681 CTTCATATTTCTGCATGCCAATGCCATTTTTATAGCTTGTAAATTCACACAATGGTCCCTTAAGC
66 CTTCATATTTCTGCATGCCAATGCCATTTTTATAGCTTGTAAATTCACACAATGGTCCCTTAAGC
* * *
16683746 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTA
131 CTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTGGAAACTTTTTA
* *
16683811 TGGTTCGGGATTTTTTAAAATTTTTTCAAAAGAAGTGTTGGCCCCAAACATGGTAAACGTGATCC
196 CGGTTCGGGATTTTTTAAAATTTTTTCAAAAGAAGTGTTAGCCCCAAACATGGTAAACGTGATCC
*
16683876 TTGTATTTTTGTTGACATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAGGATTTTGTGA
261 TTGTATTTTTGTTGACATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGA
* * *
16683941 CAATGTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATC
326 CAATGTGAAAAAAGTGCCCCCATTTCAAACACTTTAATGGCTACCAGCAGCAAACCTGTAAAATC
* * *
16684006 TCAAATGCTCTTTAAGGGGGTGTCAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
391 TCAAATGCTCTTTAAGGGGGTGTCAGTTCACAAGGTTTGATGAGGGACAGGGGGCCAATATAAGG
*
16684071 GCCAAGTGCCAGCACCCATCGCACATCATGTGCGCACCACCCCCCCGACCCCCCCAATCGCCAGA
456 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACCACCCCCCCGACCCCCCCAATCGCCAGA
* * * *
16684136 TCCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCTGCGATGGTGCCCCGACGAAGAAAAAT
521 ACCCAAAT-----C-GTCA-G-T-TCC-G-GA-----C--CAATGGTCCCCCGACGAAGAAAAAT
* * * *
16684201 GCCTCACCAGCACTTGCCCAAGCCCAGCATGTGCTACCGTAACCCTCAGTCCGGTCTGATCTTAG
568 GCCGCACCAGCACATGCCCAAGCCCAGCATGTGCCACCGCAACCCTCAGTCCGGTCTGATCTTAG
* *
16684266 ACTGGGAATGAACTCCGTATGCTTAGGCTGGGAGTGAACTCCGTATGCCTAAGTCAACCAACGAA
633 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAA
* *
16684331 ACGAGCGTGCGG-GCGCTCAGTCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGTCGGGTC
698 ACGAGCGTGCGGTG-GCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGATCGGGTC
* * * *
16684395 CCCCTCTACGTGTTGCCAATCCTACTGCTGCATCCC-CTGGTCCT-GTCTGATCTTAGACTGGGA
762 CCCCACTACGTGCTGCCAATCCTACTGCTGCAACCCTC-GGT-CTGGTCTAATCTTAGACTGGGA
* *
16684458 ATGAACTCCGGATGCCTAAGCCGATCGACGAAACAAACGGGCAGAAGGGCGGGCACTAC
825 ATGAACTCCGGATGCCTAAGCCAACCGACGAAACAAACGGGC----GGGCGGGCACTAC
*
16684517 ACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGAGTGGTAGGTGGGTTTAGGCATAT
1 ACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGAGTGGTAGGTGGGTTTAGGCACAT
* * * *
16684582 CTTCATATTTCTGCGTGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGC
66 CTTCATATTTCTGCATGCCAATGCCATTTTTATAGCTTGTAAATTCACACAATGGTCCCTTAAGC
16684647 CTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTGGAAACTTTTTA
131 CTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTGGAAACTTTTTA
** * * * *
16684712 CGGTTCGGGATTTTTTAAAATGTTTTT-GGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATC
196 CGGTTCGGGATTTTTTAAAAT-TTTTTCAAAAGAAGTGTTAGCCCCAAACATGGTAAACGTGATC
* * * *
16684776 CTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGTTAAAAACTCGAAGTGTACATGATTTTGTG
260 CTTGTATTTTTGTTGACATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTG
* *
16684841 ACTACT-TGAAAAAAGTGCCCCCATTTCAAACACTTTAATGGCTACCGGCAGCAAACCTGTAAAA
325 AC-AATGTGAAAAAAGTGCCCCCATTTCAAACACTTTAATGGCTACCAGCAGCAAACCTGTAAAA
* * * *
16684905 TCTCAAATGCTCTTTATGGGGTTGTGAGTTCACAAGGTTTGATGAGGGACAGGGGGCCAATGTAA
389 TCTCAAATGCTCTTTAAGGGGGTGTCAGTTCACAAGGTTTGATGAGGGACAGGGGGCCAATATAA
* * * *
16684970 GGGCCAAGTACCAGCACCCATCGCACATCATG-GCGCA-CA-TCCCCCGGCCCCCCCAATTGCCG
454 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACCACCCCCCCGACCCCCCCAATCGCCA
*
16685032 GAACCCAAAT-GTC-G-TCC-GA-CAATGGTCCCCCGACGAAGAAAAATGCGGCACCAGCACATG
519 GAACCCAAATCGTCAGTTCCGGACCAATGGTCCCCCGACGAAGAAAAATGCCGCACCAGCACATG
* * * * * ** * *
16685092 CTCGAGCCCAGCATGTGCCGCCGCAACCCTCGGTCTGGTCCAATCTTAGATTGGGAATGAACTAC
584 CCCAAGCCCAGCATGTGCCACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCC
* *
16685157 ATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACC-ACGAAACTAGCG
649 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC-AACCAACGAAACGAGCG
16685213 GATCGGCAGC
Statistics
Matches: 1397, Mismatches: 156, Indels: 82
0.85 0.10 0.05
Matches are distributed among these distances:
869 395 0.28
870 48 0.03
871 97 0.07
872 7 0.01
873 3 0.00
874 1 0.00
875 138 0.10
876 5 0.00
877 1 0.00
880 1 0.00
881 2 0.00
883 2 0.00
886 4 0.00
889 1 0.00
891 3 0.00
893 1 0.00
894 1 0.00
895 3 0.00
896 5 0.00
897 185 0.13
898 29 0.02
899 2 0.00
900 5 0.00
901 451 0.32
902 7 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (879 bp):
ACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGAGTGGTAGGTGGGTTTAGGCACAT
CTTCATATTTCTGCATGCCAATGCCATTTTTATAGCTTGTAAATTCACACAATGGTCCCTTAAGC
CTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTGGAAACTTTTTA
CGGTTCGGGATTTTTTAAAATTTTTTCAAAAGAAGTGTTAGCCCCAAACATGGTAAACGTGATCC
TTGTATTTTTGTTGACATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGA
CAATGTGAAAAAAGTGCCCCCATTTCAAACACTTTAATGGCTACCAGCAGCAAACCTGTAAAATC
TCAAATGCTCTTTAAGGGGGTGTCAGTTCACAAGGTTTGATGAGGGACAGGGGGCCAATATAAGG
GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACCACCCCCCCGACCCCCCCAATCGCCAGA
ACCCAAATCGTCAGTTCCGGACCAATGGTCCCCCGACGAAGAAAAATGCCGCACCAGCACATGCC
CAAGCCCAGCATGTGCCACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGT
ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGGTGGCTC
AGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCACTACGTGCTGCCAA
TCCTACTGCTGCAACCCTCGGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGGATGCCTAAGC
CAACCGACGAAACAAACGGGCGGGCGGGCACTAC
Found at i:16685344 original size:26 final size:26
Alignment explanation
Indices: 16685315--16685367 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16685305 GTTGACATAG
16685315 GCATACGAAGTTCATTCCC-AGTCTAA
1 GCATACGAAGTTCATTCCCGA-TCTAA
*
16685341 GCATACGGAGTTCATTCCCGATCTAA
1 GCATACGAAGTTCATTCCCGATCTAA
16685367 G
1 G
16685368 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCGATCTAA
Found at i:16686093 original size:26 final size:26
Alignment explanation
Indices: 16686057--16686109 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16686047 GTTGACTTAG
*
16686057 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16686083 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16686109 G
1 G
16686110 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16687826 original size:26 final size:26
Alignment explanation
Indices: 16687797--16687849 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16687787 GTTGACTTAG
16687797 GCATACAG-AGTTCATTCCCAGTCTAA
1 GCATAC-GCAGTTCATTCCCAGTCTAA
16687823 GCATACGCAGTTCATTCCCAGTCTAA
1 GCATACGCAGTTCATTCCCAGTCTAA
16687849 G
1 G
16687850 ATTGGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGCAGTTCATTCCCAGTCTAA
Found at i:16688664 original size:26 final size:26
Alignment explanation
Indices: 16688626--16688679 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
16688616 GGGTTGACTT
16688626 AGCATACAAAGTTCATTCACAGTCTA
1 AGCATACAAAGTTCATTCACAGTCTA
** *
16688652 AGCATACGGAGTTCATTCCCAGTCTA
1 AGCATACAAAGTTCATTCACAGTCTA
16688678 AG
1 AG
16688680 ATCGGATAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.26
Consensus pattern (26 bp):
AGCATACAAAGTTCATTCACAGTCTA
Found at i:16689467 original size:26 final size:26
Alignment explanation
Indices: 16689431--16689483 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16689421 GTTGACTTAG
*
16689431 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
*
16689457 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
16689483 G
1 G
16689484 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAAGTCTAA
Found at i:16690334 original size:26 final size:26
Alignment explanation
Indices: 16690305--16690360 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
16690295 TGGGTTGACT
*
16690305 TAAGCATATGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
16690331 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
16690357 TAAG
1 TAAG
16690361 ATTGGACTGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:16692156 original size:26 final size:26
Alignment explanation
Indices: 16692104--16692156 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16692094 GTTGACTTAG
*
16692104 GCATAAGGAGTTCATTCCCGATGTAA
1 GCATAAGGAGTTCATTCCCGATCTAA
*
16692130 GCATACGGAGTTCATTCCC-AGTCTAA
1 GCATAAGGAGTTCATTCCCGA-TCTAA
16692156 G
1 G
16692157 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCGATCTAA
Found at i:16693025 original size:26 final size:27
Alignment explanation
Indices: 16692989--16693041 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
16692979 TGACTTAGGC
16692989 ATACGGAGTTCA-TTCCCAGTCTAAGA
1 ATACGGAGTTCATTTCCCAGTCTAAGA
16693015 ATACGGAGTTCATTTCCCAGTCTAAGA
1 ATACGGAGTTCATTTCCCAGTCTAAGA
16693042 TCAGATCGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 12 0.46
27 14 0.54
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (27 bp):
ATACGGAGTTCATTTCCCAGTCTAAGA
Found at i:16693921 original size:26 final size:26
Alignment explanation
Indices: 16693892--16693944 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16693882 GTTGACTTAG
*
16693892 GCATACGGAGTTCATTCCCGGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16693918 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16693944 G
1 G
16693945 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16697487 original size:26 final size:26
Alignment explanation
Indices: 16697457--16697509 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16697447 GTTGACTTAG
*
16697457 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16697483 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16697509 G
1 G
16697510 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16700334 original size:898 final size:896
Alignment explanation
Indices: 16698346--16710007 Score: 12993
Period size: 898 Copynumber: 13.1 Consensus size: 896
16698336 GTTGACTTAG
* *
16698346 GCATACGAAGTTCATTCCCAGTCTAAGATCGAACCGAACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-AACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * *
16698411 CTCGAGCATGTACTGGTGCCACATTTTTCTTCGTCGGGTCACCATCGTCGGAGCATCACCGGAGA
65 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * ** *
16698476 ACCTGACTGACGGCATTAGGGTTCCGACGATCGGGGGGCTGGGGGGGTGTGTGCGCAGATGATGT
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGC-CAGGGGG-GTGTGCGCACATGATGT
* * *
16698541 GCGATGGGTGCTGGTACTTCGCCCTTGTATTGGCCCCCTATCCCTCATCAAACTTTGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
* * * * * *
16698606 CACCCCCTTAATGCGCATTTGAGATTTTACAGGTTGGCTGCCAGTAGCAATTAAAATGTCTAAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
16698671 TGGGGATACTTTTTCCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * ** *
16698735 GTGCATGCCAACAAAAATACAAGGATCGCGCCTACCAAGTTTCGGTTCAAAACTCCTTCCAAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAA
* * * * *
16698800 AATTTTAAAAAATCCCGAACCGCAAAAAAGTTTTGAGAATCGTGAAAAATAAAAAATGAGTCATT
453 AATTTTAAAAAATCCCGAACCGC-AAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
16698865 TTGCCGTGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
16698930 CATTAGCATGCAGAAATATGAAGATGTGTCTAAACCCACCTACTACCCTATCGATCAACGGCTTG
582 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
16698995 CGCATCCCGTCTCTATGGTCGGAGTAGTGCCCGCCCG---CCCG-TCCGTTTCGTCGATTGGCTT
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCACCCGCT-CGTTTCATCGGTTGGCTT
* * * ** * * *
16699056 AGGCATACGGAGTTCATTCCCAGTCTAAGAGCAGACCCGACCGAGGGTTGCAACAACAGGTTTGG
711 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAGGATCGG
* * * * * **
16699121 CAGCACGCAAAGGGGGACCCGGTCGATCCCC-AGCTTGCGTATCCCGCCCCTCTCGTAGACTGAG
776 CAGCATGCAGAGGGGGACCC-GCCGATCCCCGA-CTTGCGCATCCCGCCCCTCTGGCCGACTGAG
*
16699185 CGCCCGTACGCTCGTTCCGTGGGTTGACTTAGGCATAC-AGAGTTCATTCCCAGTCTAA
839 CGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGA-AGTTCATTCCCAGTCTAA
* * * * * * ** *
16699243 GCTTACGGAGTTCATTCCCAAG-CTAGGATCAGATCGGATCGAGTGTTGCGATAGCAGATGCTGG
1 GCATACGGAGTTCATTCCC-AGTCTAAGATCA-ACCGGACCGAGGGTTACGGCAGCACATGCTGG
* *
16699307 GCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAG
64 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAG
* * **
16699372 AACCT-ATCCGGCGGCATTGGGGTTCCGGCGATCGGGGGGTCGGGGGGCGGGTGTGCGCACATGA
129 AACCTGA-CCGACGGCATTGGGGTTCCGACGATCGGGGGG-C-CAGGG-GGGTGTGCGCACATGA
* * * * *
16699436 TGTGCGATGGGTGCTGGAACTTGGCGCTTATATTGGCCCCCTTTCCCACGTCAAACCTTGAGAAC
190 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAAC
*
16699501 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTG
255 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
16699566 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTGGCTGAATTTT
320 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * ** * * ** * *
16699631 TTTTTGCAGGTGAAAAAAAATACAAGGATCACGTTTACCAAGTTTGGGGTGAAAAATCCTTTGAA
385 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAA
* * * *
16699696 AAAAATTTTAAAAAATCTCGAACGGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCA
450 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCG
*
16699761 TCTTGCCATGAAACTTCACGTGAAGGCTTTAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
16699826 GGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCA-CCTAATCGATCCACGGC
580 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT-ATCGATCCACGGC
* * * * *
16699890 TTGCGCATCCCATCTCTCTGGCCAGCGTAGTGCTCGCCCGGCCACCCGCTCATTTCGTCGGTTGG
644 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC-GCCACCCGCTCGTTTCATCGGTTGG
* * ** *
16699955 CTTAGGCATACAGAGTTCATTCCAAGTCTAAGATCAGACTGGACCAAGGGTTGCGGCAGTAGGAT
708 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAGGAT
** * *
16700020 CGATAGCATGCAGAGGGGGACCCAGCCGATCCCCGACTT-CTGCATCCCACCCTTCTGGCCGACT
773 CGGCAGCATGCAGAGGGGGACCC-GCCGATCCCCGACTTGC-GCATCCCGCCCCTCTGGCCGACT
** * *
16700084 GAGCGCCCACACGCTCGTTCCGTGGGTTGACTTAGGCATACGAAGTTCATTCCAAGTCTAA
836 GAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* ** * * *
16700145 GCATACGGAGTTCATTCCCAGTCAAAGATCGAATGGGACCAAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-AACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * **
16700210 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATCGTCAAAGA
65 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * *
16700275 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGAGGGGGCCAGGGGGGT-T-CGTACATGATGTA
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCG-GGGGGCCAGGGGGGTGTGCGCACATGATGTG
16700338 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
* *
16700403 ACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
16700468 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
16700533 TGCATGCCAACAAAAATACAAGGATCATGTCTATCAAGTTTGGGTCCAAAACTCCTTCCG-AAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAAA
* * *
16700597 AATTTTAAAAAATCTCGAACCCCAAAAAAGTTTTGAGAATCGTGAAAAATAGAAAACGAGTCGTC
453 AATTTTAAAAAATCCCGAACCGC-AAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
16700662 TTGCCATGAAACTTCACGCGAAGGCTTAAGGGA-CAGTTGTATGAATTTACAAGCCATAAAAATG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA-TTGTATGAATTTACAAGCCATAAAAATG
* * *
16700726 GCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTT
581 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
16700791 GCGCATGCCGTCTCTCAGGCTGGCGTACTGCCCGCCCGCCTGCCCGCTCGTTTCATCGGTTGGCT
646 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC-ACCCGCTCGTTTCATCGGTTGGCT
* * * * * * *
16700856 TAGGCATACGGAGTTCATTCCCAGTCCAAAAT-AGGACCGGATCAAGGGTTGTGGTAGCAGGATG
710 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-GACCAGACCAAGGGTTGCGGCAGCAGGATC
* * * * * * *
16700920 GGCAGCATGCAGA-GGGGACCCGATCAATCCCCGGCTTGCGAATCTCGCCCCTCTGGTCGGCTGA
774 GGCAGCATGCAGAGGGGGACCCG-CCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGACTGA
* * * *
16700984 GCGTCCGTACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
838 GCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * * * *
16701043 GCATATGGAGTTCATTCCCAGTCTAATATCAGACCAGACTGAGGGTTACGGCAGCACCTGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCA-ACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * *
16701108 CTCGAGCATGTGCTGGTGCCACATTTTTCTTTGTCGGGGCACCATTGCCGGAGCATCGTCGGAGA
65 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * *
16701173 ACCTGACC-AGTGGCATTGGGGTTCCGACGATCGAGGGAGCCGAGGGGGGTGTCCACACATGATG
130 ACCTGACCGA-CGGCATTGGGGTTCCGACGATCG-GGGGGCC-AGGGGGGTGTGCGCACATGATG
* *
16701237 TGCGATGGGTGCTGGTACCTGGCTCTTATATTGGCCCCCTATCCCTCATCAAACCTCT-AGAACT
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT-TGAGAACT
* *
16701301 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGG
256 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
**
16701366 AGCGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * *
16701431 TTGTCCATGCCAATAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAA
386 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAA
* * * *
16701496 AAAATTTTAAAAAATCCCGAACTGTAAAATGTTTTGAAAATCGTGAAATATAGAAAACGAGTCGT
451 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT
* * *
16701561 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATGAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
16701626 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAGCCTATCGATCCGCGGCTT
581 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
16701691 GAGCATCCCGTCTCTTTGGCCGGCGTAGTGCCCGCTGGCCCATCCGCCCGCTCGTTTCATCGGTT
646 GCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CC-C--GCCC-GCCACCCGCTCGTTTCATCGGTT
* ** * * *
16701756 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGA-TAGAGGGTTGTGGCAGCAA
706 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCA-AGGGTTGCGGCAGCAG
* * * * * *
16701820 GATCGGCAGCATGCGGAGGGGAACCTGGCCTATCCCCGACTTGCGCATCCCGCCCCTCTGGTCGG
770 GATCGGCAGCATGCAGAGGGGGACC-CGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGA
16701885 CTGAGCGCCCGTACGCTCGTTTCGTGGGTTGAC-T-----TA-G--G--------CA---T--
834 CTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
**
16701926 --AT--GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCA-ACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * *
16701987 GTCGGGCATCTGCTGGCGCCGCATTTTTCTT--TACTGGGGCACCATCGTCGGAGCATCGTCGGA
65 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGT-C-GGGGCACCATCGTCGGAGCATCGCCGGA
* *
16702050 GAACCTGACCTG-CGGCATTGGGGTTCCGACGATCGGGGGTCCTGGGGGGGTGTGCGCACATGAT
128 GAACCTGACC-GACGGCATTGGGGTTCCGACGATCGGGGGGCC-AGGGGGGTGTGCGCACATGAT
* * * * *
16702114 GTGCGATGGGTG-TGGTACTCGGCCCATTATATTGGCCCCCTATTCCTCATGAAACCTCGTGAAC
191 GTGCGATGGGTGCTGGTACTTGGCCC-TTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAAC
* ** * *
16702178 TCACACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCCACCAGTAGCTATTAAAGTGTTTG
255 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
16702243 AAATGGGGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
320 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
*
16702308 TTTGTGCATGCCAACAAAAATACAAGGATCACGACTACCAAGTTTGGGGCCAAAACTCCTTCTG-
385 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-GA
* * *
16702372 AAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTC
449 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTC
* * * *
16702437 GTATTGCCATGAAAGTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGCATAAAAA
514 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * *
16702502 TGGTATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCGACGGC
579 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * *
16702567 TTGCGCATCCCGTCTCTCTGGCTGGGGTAGTGCCCGCCCG---CCCGCTCGTTTCGTCGGTTGGC
644 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCACCCGCTCGTTTCATCGGTTGGC
* * ** * *
16702629 TTAGGCATACGGAGTTCATTCCCAGCCTAAGATCAGACCAAACTGAGGGTTGAGGCAGCAAGATC
709 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAGGATC
* * * * * * * *
16702694 GGCAGCATGCCGA-GGGGTCGCAGCTGATCCCTGGCTTACGCATCCGGCCCCTCTGGCCGGA-TG
774 GGCAGCATGCAGAGGGGGAC-CCGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCC-GACTG
* * *
16702757 AGCGCCCGAATGCTCGTTTCGTGGGTTGACTTAGGCATAC-AGAGTTCATTCCTAGTCTAA
837 AGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGA-AGTTCATTCCCAGTCTAA
* * * * * * *
16702817 CCATATGGAGTTCATTGCCAGTCTAAGATCGGATCAGACCGAGGGTTATGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-AACCGGACCGAGGGTTACGGCAGCACATGCTGGG
*
16702882 CTCGGGCATGTGCTGGAGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
65 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
** *
16702947 ACCTGACCGACGGCATTGGGGTTCC-ATCGATCGGGGGGGTAGGGGGAGGTGTCCGCACATGATG
130 ACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGGCCA-GGGG-GGTGTGCGCACATGATG
**
16703011 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
* *
16703076 ACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTTTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
16703140 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTCGAGTTTTTAGTTGAATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
16703205 TGTGCATGCCAACAAAAATACTAGGATCACGCCTACCAAGTTTGGGGCCAAAACTCCTTGCG-AA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAA
* * ** * *
16703269 CAGATTTTAAAAAATCCCGAACTTCAAAAAGTTTTGAAAATCATAAAAAATAGAAAACGAGTCGT
451 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT
16703334 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
16703399 GCATTGGCACGCAGAAATATGAAGATGTGACTAAACCCACCTACCACCCTATCGATCCACGGCTT
581 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
16703464 GCGCATCCTGTCTCTCTAGCCGGCATAGTGCCCGCCCGCCCATCCGCCCGCCTGCTCGTTTCATC
646 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CCA------C-CC-GCTCGTTTCATC
* * * * * * ** * *
16703529 GATTGGCTCAGGCATACAGAGTTTATTCCCAGTATAAGATTAGACCA-AATAGAGGGTTGCAGTA
702 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCA-AGGGTTGCGGCA
* * * * * * * *
16703593 GCAGGATCGGTAGCATGTAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCACTCGTCTAG
766 GCAGGATCGGCAGCATGCAGAGGGGGACCCG-CCGATCCCCGACTTGCGCATCCCGCCCCTCTGG
** * * * * *
16703658 CCGGTTGAGCTCCCGCACGCTCATTTCGTGGGTTAACTTAGGCATACGAAGTTCATTCCTAGTCT
830 CCGACTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCT
*
16703723 CA
895 AA
* * * * * * * *
16703725 GCATATGGAGTTCACTCCCAG-CGTAAGATCAGACCAGATCGTGGGTTTCGACAGCACATCCTGG
1 GCATACGGAGTTCATTCCCAGTC-TAAGATCA-ACCGGACCGAGGGTTACGGCAGCACATGCTGG
* * **
16703789 GCTCGGGCATGTGCTGGTGCCACA-TTTTCTTCGTC--GG-AGCATCGCCGG-G--GGGCCGG-G
64 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAG
* * ** ** ** *
16703846 -----G---G--GG---T-GTG-TGCGCAC-AT---GATGCGTGATGGGTGCTG-GTAC-T--TG
129 AACCTGACCGACGGCATTGGGGTTCCG-ACGATCGGGGGGCCAGGGGGGTG-TGCGCACATGATG
** * ** * *** * * *
16703888 -GCCCT---T-AT--T--TTGGCCC-CCTA-T--CCCTC-ATCAAACCTCGAGAA-C-TCACACC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC-A-AACCTTGAGA--
* * * *** * * * * * * * *** ** *
16703937 CCCTTAAAGAGCATT--TGAG-ATTTTACAGGTTTGC-TGCCAGTAGCCATTA-------AAGTG
253 -ACTCACACCCCCTTAAAGAGCATTTGAGA-TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* * *
16703991 TCTGAAATAGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAA
316 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* ** * * * *
16704056 TTTTTTTGTTCATATCAAAAAAAATACAAGTATCATGTCTACCAAGTTTAGGGCCAAAACTCCTT
381 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * ** * * *
16704121 CTG-AAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTCAAAAAGCGTAAAAAATAGAAAATG
446 C-GAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACG
* *
16704185 AGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATA
510 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* * *
16704250 AAAATGCCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCA
575 AAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * * *
16704315 CGGCTTACGCATCCCGTCTCTCTGGCCGACATAGTGCCCGCCTG---CCCGCTCGGTTCGTCGGT
640 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCACCCGCTCGTTTCATCGGT
* * * * * *
16704377 TGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCAAACTAGACCGAGGGTTGCGGTAGCAG
705 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAG
* ** * * * * *
16704442 GATCAGCAGCACACAGAGGGGGACCCTGTCGATCCCCGGCTTGCGCATCCTGCCCCTTTGGCCGG
770 GATCGGCAGCATGCAGAGGGGGACCC-GCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGA
* * * * * *
16704507 CTGAGCACCCGCACTCTCATTTCGTGGGTT-AGCTTAGGGATACGGAGTTCATTCCCAG--T--
834 CTGAGCGCCCGTACGCTCGTTTCGTGGGTTGA-CTTAGGCATACGAAGTTCATTCCCAGTCTAA
* *
16704566 -C-TA--G-G---A-T--C-G-----G----ACCAGACCGAGGGTTACGGTAGCACATGCTGGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAACCGGACCGAGGGTTACGGCAGCACATGCTGGGC
* *
16704610 ACGGGCATGTGCTGGTGCCACATTTTTC-T--TC---G------C--CGGAGCATCGCCAGAGAA
66 TCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAA
* * * *
16704661 CCTGACCGACGGCATTGGGGTTCCGACGATGGGGGGGTCAGGGGGGGTGTGTGCACATGATGTAC
131 CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCA-GGGGGGTGTGCGCACATGATGTGC
*
16704726 GATGGGTGCTGGTACTTGGCCCTTTTATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
*
16704791 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
16704856 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * * * *
16704921 GCATGGCAAAAAAAATACAGGGATCACGTCTACCAAGTTTGGGGCAAAAAATCCTTCCAAAAAAT
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAAAA
* * * * *
16704986 TTTTAAAAAATCTCAAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGT-GTCATG
455 TTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* * * * *
16705050 CCATGAAAGTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTGCAAGCCAAAAAAATGGAAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
16705115 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCGATGGCTTACGC
585 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * *
16705180 ATCCCGTCTCTCTGGTCGGCTTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
650 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CCACCCGCTCGTTTCATCGGTTGGCTTAGG
* * ** * *
16705245 CATACGGAGTTCATTCCCAGCCTAAGATCAGACCAAACTGAGGGTTGAGGTAGCAGGATCGGCAG
714 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAGGATCGGCAG
* * * * *
16705310 CACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGTATCCCG-CCCTCTGGCCGGA-TGAGCAC
779 CATGCAGAGGGGGACCC-GCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCC-GACTGAGCGC
* *
16705373 CCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTCA-TCTAA
842 CCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCC-CAGTCTAA
* * * * *
16705428 GCATACGGAGTTCATTACCC-GTCTAAGATCGGATCAGACCGAGGGTTATGGCAGCACATACTGG
1 GCATACGGAGTTCATT-CCCAGTCTAAGATC-AACCGGACCGAGGGTTACGGCAGCACATGCTGG
* * ** * *
16705492 GCTCGGGCATGTGCTGGAGCCGCATTTTTCTTCACCGGGGCACCATCGTAGGAGCATCGCTGGAG
64 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAG
* * * * *** * *
16705557 AGCCTGACCGGCGGAATTGGGGTTCCGTCGATCGGGGGGGTGGGGGAGAGGTGTCCACACATGAT
129 AACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCAGGG-G-GGTGTGCGCACATGAT
* *
16705622 GTGCGATGGGTGCTGGTACTTGGCCCTTGTATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
191 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
* * * *
16705687 CACATCCCCTTAAAGAGCATTTAAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAA
256 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
16705752 AATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTT
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
16705817 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCTTTCCG-A
386 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAA
* * * ** * *
16705881 AAAAATTGTAAAAAATCCTGAACAGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTTG
450 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCG
* * * * *
16705946 TCTTGCCTTGAAACTTCACGTGAAGGCTTAATGAAACATTGTATGAATTTAAAAGCCATAAAAAT
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
** * * *
16706011 GGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCAGCCTATCGATTCATGGCT
580 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * ** ** * * * *
16706076 TGCGCATCCCATCTGTCTGACCGATGTAGTGCCCGCCTTCCGCCAGCTCGTTTCCTCTGTTGGCT
645 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCACCCGCTCGTTTCATCGGTTGGCT
* * ** * *
16706141 CAGGCATACGGAGTTCATTCCCTGTCTAAGATCAGACCAGACTGAGGGTTACGGTAGCAGGATCG
710 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAGGATCG
* * * * * * * * *
16706206 ACAGCACGTAGAGGGGGACCCGGTCGATCCCTGGCCTGCGCATCCCACCCCTCAGGCCGACTGAG
775 GCAGCATGCAGAGGGGGACCC-GCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGACTGAG
*** * * * *
16706271 CGCCAACACGCTCGTTTCGTGTGTTGACTTCGGCAAACGCAGTTCATTCCCAGTCTAA
839 CGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* *
16706329 G-AT-C--AG---A---CC-G---AA-AT------GA--G-GGTTGTA--GTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAACCGGACCGAGGGT-TACGGCAGCACATGCTGGG
** * *
16706368 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTTGCCGGGGCACCA---T-----CAT---CGGAGA
65 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * *
16706422 ACCTGACCGACGGCATTGGGGTTCCGGCAATCGGGGGTG-CTGGGGGGTGTGCGCACATGATGT-
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGG-GCCAGGGGGGTGTGCGCACATGATGTG
**
16706485 -GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
* *
16706549 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTTTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
16706614 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCGAGTTTTTAGCTGAATTTTTTTC
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
16706679 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTT-TGACCAAAACTCCTTTCG-AAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCGAAAAA
* * * * * * * *
16706742 AATTTTAAAAAATCTCAAACCGTAAAAAGTTTCGAAAATCATTAGAAATA-AAAACGAGTTGTCT
453 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
16706806 TGCCATGAAACTTCACGTGAAGGCTTAAGTGACCATTGTATGAATTTACAAG-CATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * ** ** *
16706870 ATTGGCATGTAGAAATATGAAGATGTGCATAAACCCACCTACCACCCTATTAATCCACAACTTAC
583 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
16706935 GCATCCCATCTTTCTGGCCGGCGTAGTGCCCGCTCGCCCGCCGGCTCGCTCGTTTCATTGGTTGG
648 GCATCCCGTCTCTCTGGCCGGCGTAGTG--C-C-CGCCCGCC-ACCCGCTCGTTTCATCGGTTGG
* ** * * * *
16707000 CTTAGGCATACGGAGTTCATTCCCAGTCTGAGATTGGA-CGGATCAAGGGTTGTGGCAGCTGGAT
708 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAGGAT
** ** * * *
16707064 CAACAGCACACAGAGTGTGACCCGACTGATCCCC-AGCTTGCGCATCCCGCCCCTCTGGCCAGA-
773 CGGCAGCATGCAGAGGGGGACCCG-CCGATCCCCGA-CTTGCGCATCCCGCCCCTCTGGCC-GAC
* * * *
16707127 TGAGCGCCTGAACGGTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
835 TGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* ** * * * *
16707189 GCATACGGAGTTCATTCCCAATCTAAGATTGGACCAGACTGAGGGTTGCGGCAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGA-TCAACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * * * *
16707254 ATCAGGCATGTGCTGGAGCCACATTTTTCTTTGCCGGGGCACCATCGTC-GAGCATCACCGAAGA
65 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * *
16707318 ACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGTGGCGAGGAAGGGTGCGCGCACATGATGT
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGG-GGCCAGG-GGGGTGTGCGCACATGATGT
* *
16707383 GCGATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
* * * *
16707448 CATCCCCTTAAAGAGCATTTAAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
16707513 TGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
16707578 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGACTAAAACTCCTTCCG-AAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAA
* * * ** * * *
16707642 AAATTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCCTGAAAAATAGAAAACAAGTTGTC
452 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
16707707 TTGCCTTGAAACTTCACGTGAAGGCTTAAGGGAACATTGTATGAATTCACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
16707772 CATTGGCAAGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
582 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * ** * *
16707837 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCTCGCCTGCTCAATTCGTCTGTTG
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG----CCCGC-CACCCGCTCGTTTCATCGGTTG
* * *
16707902 GCTCAGGCATACGGAGTTCATTCCCCA-TCTAAGA-CTGGACCAGACCAAGGGTTGCGGCAGTAG
707 GCTTAGGCATACGGAGTTCATT-CCCAGTCTAAGATC-AGACCAGACCAAGGGTTGCGGCAGCAG
* * * * * *
16707965 GATCAGCAGCACGCAGAGGGGGAGCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTATGGCCGA
770 GATCGGCAGCATGCAGAGGGGGACCCG-CCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGA
* * * ** *
16708030 CCGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTGGGCATACGGTGTTCATTTCCCATTCTAA
834 CTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCA-TTCCCAGTCTAA
* ** * *
16708094 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACTAGATCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCA-ACCGGACCGAGGGTTACGGCAGCACATGCTGGG
** * ** * ** **
16708159 CT-GGGCATGTGCTGGTGCCGTATTTTTTTTCACCGAGGCACCATCACCGGAGCATCGTTGGAGA
65 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* ** * *
16708223 ATCTGACCGACGGCATTGGGGTTTAGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATAATGTG
130 ACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCAGGGGGGTGTGCGCACATGATGTG
*
16708287 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
* *
16708352 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGGAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * ** *
16708417 GGGGACACTTTTTTCAAATGGTTACAAAATCTTGTACACTTCGACTTTTTAGAAGAACTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
*
16708482 TGCATGCCAACAAAAATACAAGGATCTCGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG-AAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCGAAAAA
* * ** *
16708546 AATTTTAAAAAATCCTGAACCACAAAAAGTTTTGAAAATTATGAAAAATAGAAAACGAGTTGTCT
453 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * *
16708611 TGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTTCAAGTCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
16708676 ATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGT
583 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* ** * *
16708741 GCATCCCGTCTTTCTGGCCGGCGTAAAGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTA
648 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CCACCCGCTCGTTTCATCGGTTGGCTTA
* * * **
16708806 GGCATA-GGAGTTC-TT-TCAGTCTAAGATCAGACCGGATCGAA-GGTTGCCCCA-CAGGATCGG
712 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CCAAGGGTTGCGGCAGCAGGATCGG
* * * * * * *
16708866 TAGCACGCAGAGGGGGACTCGACCGATCCTCGACTTACGCATCCCACCCCTCTGGCCGGCTGAGC
776 CAGCATGCAGAGGGGGACCCG-CCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGACTGAGC
* * *
16708931 GCCCGTACGCTCGTTTCGTGGGCTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
840 GCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * ** *
16708988 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-AACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * *
16709053 CTCGGGCATGTGCTAGTGCCATATTTTTCTTCGTCGAGG---CA----C----CATCGCCGGAGA
65 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * *
16709107 ACCTGACTGACGGCATTAGGGTTTCGACGATCGGAGGGGCC-GAGGGGGTGTGCGTACATGATGT
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGG-GGGGCCAG-GGGGGTGTGCGCACATGATGT
* * * *
16709171 GCGATGCGTGCTAGTACTTGGCCCTTCTATTGGCCCCCTATCCCTCATCAAACC-TCAGGAACTC
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGA-GAACTC
*
16709235 ACACCCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
16709300 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
*
16709365 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTG-AA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-GAAA
* * * * *
16709429 AAAATTTTGAAAAAATCTCGAAAAAATTTTAAAAAATCTTG-AAAAAATTTTAAAAAATCATGAA
451 AAAATTTT-AAAAAATCCCG--------------AA-C-CGCAAAAAGTTTT-GAAAATCGTGAA
* * * *
16709493 AAATAGAGAACGAGTCGTCTCGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAAT
498 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* *
16709558 TTACAAGCCATAAAAATGGCATTGGCACGCAGAAA-ATGAAGATGTGCCTAAACCTACCCACCAC
563 TTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * * * *
16709622 CCTATCGATTCTCGGCTTGCGCATCCCGAC-GT-AGTGCC--C-----GCCCGCCCGTCTACCCG
628 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG-GCCGGCGTAGTGCCCGCCCG-CCACCCG
* * * * * * *
16709678 CTCATTTCGTCAGTTGGCTTACGCATATGAAGTTCATTCCCAGTCTAAGATC-GAACCAGACGGA
691 CTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGAC-CA
** * * *
16709742 A-GGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGACCTAGCCGATCCCCGGCTTGTGCATC
754 AGGGTTGCGGCAGCAGGATCGGCAGCATGCAGAGGGGGACC-CGCCGATCCCCGACTTGCGCATC
* * * * * *
16709806 CCACCCCTCTAGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATAC-AGAGT
818 CCGCCCCTCTGGCCGACTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGA-AGT
* *
16709870 TCTTTCTCAGTCTAA
882 TCATTCCCAGTCTAA
* * * * * *
16709885 GCATACGGAGTTCATTCCCAGTCTAAAATCGGATCGGACCGAAGGTTACGACAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-AACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * *
16709950 CTTGGGCATGTGCTGGTGACGCATTTTTCTTCATTGGGGCACCATCGTCGGAGCATCG
65 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCG
16710008 ACACATAGAA
Statistics
Matches: 9219, Mismatches: 1191, Indels: 699
0.83 0.11 0.06
Matches are distributed among these distances:
809 3 0.00
810 1 0.00
811 1 0.00
812 4 0.00
813 1 0.00
816 1 0.00
817 2 0.00
818 1 0.00
819 50 0.01
820 5 0.00
821 1 0.00
823 2 0.00
824 1 0.00
826 1 0.00
827 4 0.00
828 5 0.00
829 1 0.00
830 1 0.00
831 4 0.00
832 10 0.00
833 2 0.00
835 2 0.00
836 3 0.00
837 1 0.00
839 3 0.00
840 2 0.00
842 1 0.00
843 1 0.00
844 8 0.00
845 166 0.02
846 12 0.00
847 3 0.00
848 13 0.00
849 22 0.00
855 152 0.02
856 268 0.03
857 395 0.04
858 114 0.01
859 349 0.04
860 125 0.01
861 70 0.01
862 2 0.00
863 17 0.00
864 56 0.01
865 9 0.00
866 6 0.00
867 10 0.00
868 7 0.00
869 63 0.01
870 96 0.01
871 2 0.00
872 2 0.00
873 1 0.00
874 8 0.00
875 56 0.01
876 8 0.00
877 18 0.00
878 456 0.05
879 141 0.02
880 7 0.00
881 5 0.00
882 4 0.00
883 2 0.00
884 105 0.01
885 273 0.03
886 67 0.01
887 5 0.00
888 3 0.00
889 2 0.00
890 6 0.00
892 3 0.00
893 44 0.00
894 79 0.01
895 676 0.07
896 160 0.02
897 368 0.04
898 954 0.10
899 406 0.04
900 857 0.09
901 617 0.07
902 476 0.05
903 619 0.07
904 264 0.03
905 181 0.02
906 9 0.00
907 92 0.01
908 165 0.02
909 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (896 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAACCGGACCGAGGGTTACGGCAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAA
CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAAAAT
TTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCACCCGCTCGTTTCATCGGTTGGCTTAGGCA
TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAGGATCGGCAGCA
TGCAGAGGGGGACCCGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGT
ACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
Found at i:16701047 original size:26 final size:26
Alignment explanation
Indices: 16701017--16701068 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
16701007 GTTGACTTAG
16701017 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16701043 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16701069 TATCAGACCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16703191 original size:895 final size:901
Alignment explanation
Indices: 16701923--16710007 Score: 7103
Period size: 895 Copynumber: 9.1 Consensus size: 901
16701913 TTGACTTAGG
* *
16701923 CATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCACATGCTGGGG
1 CATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT-TGGCAGCACATGCTGGGC
* * * *
16701988 TCGGGCATCTGCTGGCGCCGCATTTTTCTT--TACTGGGGCACCATCGTCGGAGCATCGTCGGAG
65 TCGGGCATGTGCTGGAGCCACATTTTTCTTCGT-C-GGGGCACCATCGTCGGAGCATCGCCGGAG
*
16702051 AACCTGACCTGCGGCATTGGGGTTCCGACGATCGGGGGTCCTGGGGGGGTGTGCGCACATGATGT
128 AACCTGACCTGCGGCATTGGGGTTCCGACGATCGGGGGTCCTGGGGGGGTGTCCGCACATGATGT
* * **
16702116 GCGATGGGTGTGGTACTCGGCCCATTATATTGGCCCCCTATTCCTCATGAAACCTCGTGAACTCA
193 GCGATGGGTGTGGTACTCGGCCCATTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
* *
16702181 CACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCCACCAGTAGCTATTAAAGTGTTTGAAA
258 CACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACCACCAGTAGCCATTAAAGTGTTTGAAA
16702246 TGGGGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
16702311 GTGCATGCCAACAAAAATACAAGGATCACGACTACCAAGTTTGGGGCCAAAACTCCTT-CTGAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGACTACCAAGTTTGGGGCCAAAACTCCTTGC-GAAA
* * *
16702375 AAATTTTAAAAAATCCTGAACCACAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTA
452 AAATTTTAAAAAATCCCGAACCACAAAAAGTTTTAAAAATCATAAAAAATAGAAAACGAGTCGTA
* *
16702440 TTGCCATGAAAGTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGCATAAAAATGG
517 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
16702505 TATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCGACGGCTTG
582 CATTGGCACGCAGAAATATGAAGATGTGACTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * ** * *
16702570 CGCATCCCGTCTCTCTGGCTGGGGTAGT-GCCCG-C-CCG-C-CC-GCTCGTTTCGTCGGTTGGC
647 CGCATCCCGTCTCTCTAGCCGGCATAGTCGCCCGCCACCGCCGCCTGCTCGTTTCATCGATTGGC
* * *
16702629 TTAGGCATACGGAGTTCATTCCCAGCCTAAGATCAGACCAAACT-GAGGGTTG-AGGCAGCAAGA
712 TCAGGCATACAGAGTTCATTCCCAGCATAAGATCAGACCAAA-TAGAGGGTTGCA-GCAGCAAGA
* * * * ** *
16702692 TCGGCAGCATGCCGA-GGGGTCGCAG-CTGATCCCTGGCTTACGCATCCGGCCCCTCTGGCCGGA
775 TCGGCAGCATGCAGAGGGGGAC-CAGACCGATCCCCGGCTTACGCATCCCACCCCTCTAGCCGGA
* * *
16702755 TGAGCGCCCGAATGCTCGTTTCGTGGGTTGACTTAGGCATAC-AGAGTTCATTCCTAGTCTAAC
839 TGAGCGCCCGAACGCTCATTTCGTGGGTTAACTTAGGCATACGA-AGTTCATTCCTAGTCTAAC
* * *
16702818 CATATGGAGTTCATTGCCAGTCTAAGATCGGATCAGACCGAGGGTTATGGCAGCACATGCTGGGC
1 CATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT-TGGCAGCACATGCTGGGC
16702883 TCGGGCATGTGCTGGAGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAA
65 TCGGGCATGTGCTGGAGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAA
**
16702948 CCTGACC-GACGGCATTGGGGTTCC-ATCGATCGGGGG-GGTAGGGGGAGGTGTCCGCACATGAT
130 CCTGACCTG-CGGCATTGGGGTTCCGA-CGATCGGGGGTCCT-GGGGG-GGTGTCCGCACATGAT
*
16703010 GTGCGATGGGTGCTGGTACTTGGCCC-TTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAAC
191 GTGCGATGGGTG-TGGTACTCGGCCCATTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAAC
**
16703074 TCACAC-CCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTTTG
255 TCACACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACCACCAGTAGCCATTAAAGTGTTTG
* * *
16703138 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTCGAGTTTTTAGTTGAATTTT
320 AAATGGGGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* *
16703203 TTTGTGCATGCCAACAAAAATACTAGGATCACGCCTACCAAGTTTGGGGCCAAAACTCCTTGCGA
385 TTTGTGCATGCCAACAAAAATACAAGGATCACGACTACCAAGTTTGGGGCCAAAACTCCTTGCGA
* * ** *
16703268 ACAGATTTTAAAAAATCCCGAACTTCAAAAAGTTTTGAAAATCATAAAAAATAGAAAACGAGTCG
450 AAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTTAAAAATCATAAAAAATAGAAAACGAGTCG
* *
16703333 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
515 TATTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
16703398 GGCATTGGCACGCAGAAATATGAAGATGTGACTAAACCCACCTACCACCCTATCGATCCACGGCT
580 GGCATTGGCACGCAGAAATATGAAGATGTGACTAAACCCACCTACCACCCTATCGATCCACGGCT
*
16703463 TGCGCATCCTGTCTCTCTAGCCGGCATAGTGCCCGCCCGCCCATCCGCCCGCCTGCTCGTTTCAT
645 TGCGCATCCCGTCTCTCTAGCCGGCATAGT---CGCCCG-CCA-CCG-CCGCCTGCTCGTTTCAT
* * * *
16703528 CGATTGGCTCAGGCATACAGAGTTTATTCCCAGTATAAGATTAGACCAAATAGAGGGTTGCAGTA
704 CGATTGGCTCAGGCATACAGAGTTCATTCCCAGCATAAGATCAGACCAAATAGAGGGTTGCAGCA
* * * * * *
16703593 GCAGGATCGGTAGCATGTAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCACTCGTCTAG
769 GCAAGATCGGCAGCATGCAGAGGGGGACCAGACCGATCCCCGGCTTACGCATCCCACCCCTCTAG
* * *
16703658 CCGGTTGAGCTCCCGCACGCTCATTTCGTGGGTTAACTTAGGCATACGAAGTTCATTCCTAGTCT
834 CCGGATGAGCGCCCGAACGCTCATTTCGTGGGTTAACTTAGGCATACGAAGTTCATTCCTAGTCT
* *
16703723 CAG
899 AAC
* * * * *
16703726 CATATGGAGTTCACTCCCAG-CGTAAGATCAGACCAGATCGTGGGTTTCGACAGCACATCCTGGG
1 CATATGGAGTTCATTCCCAGTC-TAAGATCAGACCAGACCGAGGGTTT-GGCAGCACATGCTGGG
* * * ** *
16703790 CTCGGGCATGTGCTGGTGCCACA-TTTTCTTCGTC--GG-AGCATCGCCGG-G--GGGCCGG-GG
64 CTCGGGCATGTGCTGGAGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
*** ** * * * * * *** * * *
16703847 GGGTG-TGTGC-GCACAT---GATGCG-TGAT---GGGTGCT--GGTACT-T-GGC-CCTTAT-T
129 ACCTGACCTGCGGCA-TTGGGGTTCCGACGATCGGGGGTCCTGGGGGGGTGTCCGCACATGATGT
* ***** * * * * *** ** *
16703897 ----TTGGCCCCCTA-TC--CCTCATCA-A----ACCTCGAGAACTCA-CACCCCCTTAA-AGA-
193 GCGATGGGTGTGGTACTCGGCC-CATTATATTGGCCCCCTATCCCTCATCA-AACCTCAAGA-AC
* ** * * * **
16703947 --GCA-T---TT---GAGATTTTACAGGTTTGCTGCCA-G--TAGCCATTA----------AAGT
255 TCACACTCCCTTAAAGAGCATTT-GAGATTT--T-ACAGGTTTA-CCACCAGTAGCCATTAAAGT
* * * * *
16703990 GTCTGAAATAGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGA
315 GTTTGAAATGGGGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* ** * * * * *
16704055 ATTTTTTTGTTCATATCAAAAAAAATACAAGTATCATGTCTACCAAGTTTAGGGCCAAAACTCCT
380 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGACTACCAAGTTTGGGGCCAAAACTCCT
* * * * *
16704120 T-CTGAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTCAAAAAGCGTAAAAAATAGAAAAT
445 TGC-GAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTTAAAAATCATAAAAAATAGAAAAC
* *
16704184 GAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCAT
509 GAGTCGTATTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * * *
16704249 AAAAATGCCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCC
574 AAAAATGGCATTGGCACGCAGAAATATGAAGATGTGACTAAACCCACCTACCACCCTATCGATCC
* * * * * *
16704314 ACGGCTTACGCATCCCGTCTCTCTGGCCGACATAGT-GCCCG-C-CTG-C-CC-GCTCGGTTCGT
639 ACGGCTTGCGCATCCCGTCTCTCTAGCCGGCATAGTCGCCCGCCACCGCCGCCTGCTCGTTTCAT
* * * * * * ** * *
16704373 CGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTC-TAAGATCAAACTAGACCGAGGGTTGCGGT
704 CGATTGGCTCAGGCATACAGAGTTCATTCCCAG-CATAAGATCAGACCAAATAGAGGGTTGCAGC
* * ** * * * ** *
16704437 AGCAGGATCAGCAGCACACAGAGGGGGACCCTG-TCGATCCCCGGCTTGCGCATCCTGCCCCTTT
768 AGCAAGATCGGCAGCATGCAGAGGGGGA-CCAGACCGATCCCCGGCTTACGCATCCCACCCCTCT
* * * * * *
16704501 GGCCGGCTGAGCACCCGCACTCTCATTTCGTGGGTTAGCTTA-G-----G--G---------A--
832 AGCCGGATGAGCGCCCGAACGCTCATTTCGTGGGTTAACTTAGGCATACGAAGTTCATTCCTAGT
16704547 -T-A-
897 CTAAC
* * * *
16704549 C----GGAGTTCATTCCCAGTCTAGGATCGGACCAGACCGAGGGTTACGGTAGCACATGCTGGGC
1 CATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT-TGGCAGCACATGCTGGGC
* * *
16704610 ACGGGCATGTGCTGGTGCCACATTTTTC-T--TC---G------C--CGGAGCATCGCCAGAGAA
65 TCGGGCATGTGCTGGAGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAA
* * **
16704661 CCTGACC-GACGGCATTGGGGTTCCGACGATGGGGGGGT-CAGGGGGGGTGTGTGCACATGATGT
130 CCTGACCTG-CGGCATTGGGGTTCCGACGAT-CGGGGGTCCTGGGGGGGTGTCCGCACATGATGT
* * * **
16704724 ACGATGGGTGCTGGTACTTGGCCC-TTTTATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
193 GCGATGGGTG-TGGTACTCGGCCCATTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* * * *
16704788 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAA
257 ACACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACCACCAGTAGCCATTAAAGTGTTTGAA
* *
16704853 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTT
322 ATGGGGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * * * *
16704918 TGTGCATGGCAAAAAAAATACAGGGATCACGTCTACCAAGTTTGGGGCAAAAAATCCTT-CCAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGACTACCAAGTTTGGGGCCAAAACTCCTTGCGAAA
* * ** * *
16704982 AAATTTTTAAAAAATCTCAAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGT-GT
452 AAA-TTTTAAAAAATCCCGAACCACAAAAAGTTTTAAAAATCATAAAAAATAGAAAACGAGTCGT
* * * * *
16705046 CA-TGCCATGAAAGTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTGCAAGCCAAAAAAAT
516 -ATTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * * *
16705110 GGAATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCGATGGCT
580 GGCATTGGCACGCAGAAATATGAAGATGTGACTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * * *
16705175 TACGCATCCCGTCTCTCTGGTCGGCTTAGT-GCCCG-C-CCGCCCGCCCGCTCGTTTCGTCGGTT
645 TGCGCATCCCGTCTCTCTAGCCGGCATAGTCGCCCGCCACCG-CCGCCTGCTCGTTTCATCGATT
* * * *
16705237 GGCTTAGGCATACGGAGTTCATTCCCAGCCTAAGATCAGACCAAACT-GAGGGTTG-AGGTAGCA
709 GGCTCAGGCATACAGAGTTCATTCCCAGCATAAGATCAGACCAAA-TAGAGGGTTGCA-GCAGCA
* * * ** * * * *
16705300 GGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGTATCCC-GCCCTCTGGCCG
772 AGATCGGCAGCATGCAGAGGGGGACCAGACCGATCCCCGGCTTACGCATCCCACCCCTCTAGCCG
* * * *
16705364 GATGAGCACCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTCA-TCTAA
837 GATGAGCGCCCGAACGCTCATTTCGTGGGTTAACTTAGGCATACGAAGTTCATTCCT-AGTCTAA
*
16705428 G
901 C
* * * *
16705429 CATACGGAGTTCATTACCC-GTCTAAGATCGGATCAGACCGAGGGTTATGGCAGCACATACTGGG
1 CATATGGAGTTCATT-CCCAGTCTAAGATCAGACCAGACCGAGGGTT-TGGCAGCACATGCTGGG
* ** * *
16705493 CTCGGGCATGTGCTGGAGCCGCATTTTTCTTCACCGGGGCACCATCGTAGGAGCATCGCTGGAGA
64 CTCGGGCATGTGCTGGAGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * ** *
16705558 GCCTGACCGGCGGAATTGGGGTTCCGTCGATCGGGGG-GGTGGGGGAGAGGTGTCCACACATGAT
129 ACCTGACCTGCGGCATTGGGGTTCCGACGATCGGGGGTCCT-GGGG-G-GGTGTCCGCACATGAT
* * *
16705622 GTGCGATGGGTGCTGGTACTTGGCCC-TTGTATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
191 GTGCGATGGGTG-TGGTACTCGGCCCATTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAAC
* * * ** *
16705686 TCACA-TCCCCTTAAAGAGCATTTAAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
255 TCACACT-CCCTTAAAGAGCATTTGAGATTTTACAGGTTTACCACCAGTAGCCATTAAAGTGTTT
* * * *
16705750 AAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTT
319 GAAATGGGGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * * *
16705815 TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCTTTCCG
384 TTTTGTGCATGCCAACAAAAATACAAGGATCACGACTACCAAGTTTGGGGCCAAAACTCCTTGCG
* * * * * *
16705880 AAAAAATTGTAAAAAATCCTGAA-CAGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGT
449 AAAAAATTTTAAAAAATCCCGAACCA-CAAAAAGTTTTAAAAATCATAAAAAATAGAAAACGAGT
* * * * * * * *
16705944 TGTCTTGCCTTGAAACTTCACGTGAAGGCTTAATGAAACATTGTATGAATTTAAAAGCCATAAAA
513 CGTATTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
** * * * *
16706009 ATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCAGCCTATCGATTCATGG
578 ATGGCATTGGCACGCAGAAATATGAAGATGTGACTAAACCCACCTACCACCCTATCGATCCACGG
* * *** ** * *
16706074 CTTGCGCATCCCATCTGTCT-GACCGATGTAGT-GCCCG-C-CTTCCGCCAGCTCGTTTCCTCTG
643 CTTGCGCATCCCGTCTCTCTAG-CCGGCATAGTCGCCCGCCACCGCCGCCTGCTCGTTTCATC-G
* * * * * *
16706135 -TTGGCTCAGGCATACGGAGTTCATTCCCTGTC-TAAGATCAGACCAGACT-GAGGGTTACGGTA
706 ATTGGCTCAGGCATACAGAGTTCATTCCCAG-CATAAGATCAGACCA-AATAGAGGGTTGCAGCA
* * * * * ** * * *
16706197 GCAGGATCGACAGCACGTAGAGGGGGACCCGGTCGATCCCTGGCCTGCGCATCCCACCCCTC-AG
769 GCAAGATCGGCAGCATGCAGAGGGGGACCAGACCGATCCCCGGCTTACGCATCCCACCCCTCTA-
* * * *
16706261 GCC-GACTGAGCG-CCAACACGCTCGTTTCGTGTGTTGAC-T-----T-CG--G-------C-A-
833 GCCGGA-TGAGCGCCCGA-ACGCTCATTTCGTGGGTTAACTTAGGCATACGAAGTTCATTCCTAG
16706306 ---AA-
896 TCTAAC
* ** * *
16706308 C----GCAGTTCATTCCCAGTCTAAGATCAGACC-GAAATGAGGGTTGTAGTAGCACATGCTGGG
1 CATATGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTT-TGGCAGCACATGCTGGG
* ** * *
16706368 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTTGCCGGGGCACCA---T-----CAT---CGGAGA
64 CTCGGGCATGTGCTGGAGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * *
16706422 ACCTGACC-GACGGCATTGGGGTTCCGGCAATCGGGGGTGCT-GGGGGGTGTGCGCACATGATGT
129 ACCTGACCTG-CGGCATTGGGGTTCCGACGATCGGGGGTCCTGGGGGGGTGTCCGCACATGATGT
*
16706485 --GATGGGTGCTGGTACTTGGCCC-TTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
193 GCGATGGGTG-TGGTACTCGGCCCATTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* **
16706547 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTTTGAA
257 ACACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACCACCAGTAGCCATTAAAGTGTTTGAA
* *
16706612 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCGAGTTTTTAGCTGAATTTTTT
322 ATGGGGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * * *
16706677 TCTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTT-TGACCAAAACTCCTTTCGAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGACTACCAAGTTTGGGGCCAAAACTCCTTGCGAAA
* * ** ** * * * *
16706741 AAATTTTAAAAAATCTCAAACCGTAAAAAGTTTCGAAAATCATTAGAAATA-AAAACGAGTTGTC
452 AAATTTTAAAAAATCCCGAACCACAAAAAGTTTTAAAAATCATAAAAAATAGAAAACGAGTCGTA
* *
16706805 TTGCCATGAAACTTCACGTGAAGGCTTAAGTGACCATTGTATGAATTTACAAG-CATAAAAATGG
517 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * ** **
16706869 CATTGGCATGTAGAAATATGAAGATGTG-CATAAACCCACCTACCACCCTATTAATCCACAACTT
582 CATTGGCACGCAGAAATATGAAGATGTGAC-TAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * * * * *
16706933 ACGCATCCCATCTTTCTGGCCGGCGTAGT-GCCCGCTCGCCCGCCGGCTCGCTCGTTTCATTGGT
646 GCGCATCCCGTCTCTCTAGCCGGCATAGTCGCCCGC-C-ACCGCCGCCT-GCTCGTTTCATCGAT
* * * ** ** **
16706997 TGGCTTAGGCATACGGAGTTCATTCCCAGTC-TGAGATTGGA-CGGATCA-AGGGTTGTGGCAGC
708 TGGCTCAGGCATACAGAGTTCATTCCCAG-CATAAGATCAGACCAAAT-AGAGGGTTGCAGCAGC
** ** ** * * * * * * * *
16707059 TGGATCAACAGCACACAGAGTGTGACCCGACTGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCC
771 AAGATCGGCAGCATGCAGAGGGGGACCAGACCGATCCCCGGCTTACGCATCCCACCCCTCTAGCC
* * * * * * *
16707124 AGATGAGCGCCTGAACGGTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
836 GGATGAGCGCCCGAACGCTCATTTCGTGGGTTAACTTAGGCATACGAAGTTCATTCCTAGTCTAA
*
16707189 G
901 C
* * ** * * * *
16707190 CATACGGAGTTCATTCCCAATCTAAGATTGGACCAGACTGAGGGTTGCGGCAGCACATACTGGGA
1 CATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT-TGGCAGCACATGCTGGGC
* * * * *
16707255 TCAGGCATGTGCTGGAGCCACATTTTTCTTTGCCGGGGCACCATCGTC-GAGCATCACCGAAGAA
65 TCGGGCATGTGCTGGAGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAA
* * ** **
16707319 CCTGACC-GACGGCATTGGGGTTCCGATGATCGGGGTGGCGAGGAAGGGTG-CGCGCACATGATG
130 CCTGACCTG-CGGCATTGGGGTTCCGACGATCGGGG-GTCCTGGGGGGGTGTC-CGCACATGATG
* * *
16707382 TGCGATGGGTGCTGCTACTTGGCCC-TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
192 TGCGATGGGTG-TGGTACTCGGCCCATTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
* * * ** * *
16707446 CACA-TCCCCTTAAAGAGCATTTAAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTA
256 CACACT-CCCTTAAAGAGCATTTGAGATTTTACAGGTTTACCACCAGTAGCCATTAAAGTGTTTG
* * *
16707510 AAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTT
320 AAATGGGGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * * *
16707575 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGACTAAAACTCCTTCCGA
385 TTTGTGCATGCCAACAAAAATACAAGGATCACGACTACCAAGTTTGGGGCCAAAACTCCTTGCGA
* * ** * * * * *
16707640 AAAAATTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCCTGAAAAATAGAAAACAAGTTG
450 AAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTTAAAAATCATAAAAAATAGAAAACGAGTCG
* * * * *
16707705 TCTTGCCTTGAAACTTCACGTGAAGGCTTAAGGGAACATTGTATGAATTCACAAGCCATAAAAAT
515 TATTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
16707770 GGCATTGGCAAGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
580 GGCATTGGCACGCAGAAATATGAAGATGTGACTAAACCCACCTACCACCCTATCGATCCACGGCT
* * ** *
16707835 TGCGCATCCCGTCTCTCTGGCCGGCGTAGT-GCCCGCCCACCCGCTCGCCTGCTCAATTCGTCTG
645 TGCGCATCCCGTCTCTCTAGCCGGCATAGTCGCCCG-CCA-CCGC-CGCCTGCTCGTTTCATC-G
* * * ** *
16707899 -TTGGCTCAGGCATACGGAGTTCATTCCCCATC-TAAGA-CTGGACCAGACCA-AGGGTTGCGGC
706 ATTGGCTCAGGCATACAGAGTTCATT-CCCAGCATAAGATC-AGACCA-AATAGAGGGTTGCAGC
* * * * * * * *
16707960 AGTAGGATCAGCAGCACGCAGAGGGGGAGCC-GACCGATCCCTGGCTTGCGCATCCCGCCCCTAT
768 AGCAAGATCGGCAGCATGCAGAGGGGGA-CCAGACCGATCCCCGGCTTACGCATCCCACCCCTCT
* * * * * * ** *
16708024 GGCC-GACCGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTGGGCATACGGTGTTCATTTCCCA
832 AGCCGGA-TGAGCGCCCGAACGCTCATTTCGTGGGTTAACTTAGGCATACGAAGTTCA-TTCCTA
* *
16708088 TTCTAAG
895 GTCTAAC
* * * * *
16708095 CATACGGAGTTCATTCCTAGTCTAAGATCAGACTAGATCGAGGGTTGCGGCAGCACATGCTGGGC
1 CATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT-TGGCAGCACATGCTGGGC
* ** * ** * ** **
16708160 T-GGGCATGTGCTGGTGCCGTATTTTTTTTCACCGAGGCACCATCACCGGAGCATCGTTGGAGAA
65 TCGGGCATGTGCTGGAGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAA
* ** * * * *
16708224 TCTGACC-GACGGCATTGGGGTTTAGGCGATCGGGGGGGCC--GGGGGGTGTGCGCACATAATGT
130 CCTGACCTG-CGGCATTGGGGTTCCGACGATC-GGGGGTCCTGGGGGGGTGTCCGCACATGATGT
* *
16708286 GCGATGGGTGCTGGTACTTGGCCC-TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
193 GCGATGGGTG-TGGTACTCGGCCCATTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* * ** *
16708350 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGGA
257 ACACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACCACCAGTAGCCATTAAAGTGTTTGAA
* * * ** *
16708415 ATGGGGACACTTTTTTCAAATGGTTACAAAATCTTGTACACTTCGACTTTTTAGAAGAACTTTTT
322 ATGGGGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
16708480 TGTGCATGCCAACAAAAATACAAGGATCTCGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGACTACCAAGTTTGGGGCCAAAACTCCTTGCGAAA
* * * * * *
16708545 AAATTTTAAAAAATCCTGAACCACAAAAAGTTTTGAAAATTATGAAAAATAGAAAACGAGTTGTC
452 AAATTTTAAAAAATCCCGAACCACAAAAAGTTTTAAAAATCATAAAAAATAGAAAACGAGTCGTA
** * *
16708610 TTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTTCAAGTCATAAAAATGG
517 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
16708675 CATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
582 CATTGGCACGCAGAAATATGAAGATGTGACTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * ** * * *
16708740 TGCATCCCGTCTTTCTGGCCGGCGTA-AAGCCCG-C-CCGTCCGCCCGCTCGTTTCGTCGGTTGG
647 CGCATCCCGTCTCTCTAGCCGGCATAGTCGCCCGCCACCG-CCGCCTGCTCGTTTCATCGATTGG
* * * ** * * ** *
16708802 CTTAGGCATA-GGAGTTC-TT-TCAGTC-TAAGATCAGACCGGATCGAAGGTTGCCCCA-CAGGA
711 CTCAGGCATACAGAGTTCATTCCCAG-CATAAGATCAGACCAAATAGAGGGTTGCAGCAGCAAGA
* * * * * *
16708862 TCGGTAGCACGCAGAGGGGGACTC-GACCGATCCTCGACTTACGCATCCCACCCCTCTGGCCGGC
775 TCGGCAGCATGCAGAGGGGGAC-CAGACCGATCCCCGGCTTACGCATCCCACCCCTCTAGCCGGA
* * * * * *
16708926 TGAGCGCCCGTACGCTCGTTTCGTGGGCTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAG
839 TGAGCGCCCGAACGCTCATTTCGTGGGTTAACTTAGGCATACGAAGTTCATTCCTAGTCTAAC
** * * *
16708989 CATACAGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTGCGGCAGCACATGCTGGGC
1 CATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT-TGGCAGCACATGCTGGGC
* * * *
16709054 TCGGGCATGTGCTAGTGCCATATTTTTCTTCGTCGAGG---CA----C----CATCGCCGGAGAA
65 TCGGGCATGTGCTGGAGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAA
* * * * * *
16709108 CCTGA-CTGACGGCATTAGGGTTTCGACGATCGGAGGGGCC-GAGGGGGTGTGCGTACATGATGT
130 CCTGACCTG-CGGCATTGGGGTTCCGACGATCGG-GGGTCCTGGGGGGGTGTCCGCACATGATGT
* * * * *
16709171 GCGATGCGTGCTAGTACTTGGCCC-TTCTATTGGCCCCCTATCCCTCATCAAACCTCAGGAACTC
193 GCGATGGGTG-TGGTACTCGGCCCATTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* * * ** *
16709235 ACACCCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
257 ACACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACCACCAGTAGCCATTAAAGTGTTTGAA
*
16709300 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
322 ATGGGGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
16709365 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTT-CTGAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGACTACCAAGTTTGGGGCCAAAACTCCTTGC-GAA
* ** * *
16709429 AAAATTTTGAAAAAATCTCGAAAAAATTTTAAAAAATCTTGAAAAAATTTTAAAAAATCATGAAA
451 AAAATTTT-AAAAAATCCCG-----------AACCA-C---AAAAAGTTTT-AAAAATCATAAAA
* * * * * *
16709494 AATAGAGAACGAGTCGTCTCGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATT
499 AATAGAAAACGAGTCGTATTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATT
* * *
16709559 TACAAGCCATAAAAATGGCATTGGCACGCAGAAA-ATGAAGATGTGCCTAAACCTACCCACCACC
564 TACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGACTAAACCCACCTACCACC
* * * * * * ** *
16709623 CTATCGATTCTCGGCTTGCGCATCCCG--AC-GTAG--TGC----CCGCCCG-C-CCGTCTACCC
629 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCATAGTCGCCCGCCACCG-CCGCCT
* * * * * *
16709677 GCTCATTTCGTC-AGTTGGCTTACGCATA-TGAAGTTCATTCCCAGTC-TAAGATC-GAACCAGA
693 GCTCGTTTCATCGA-TTGGCTCAGGCATACAG-AGTTCATTCCCAG-CATAAGATCAG-ACCAAA
** * * * ** **
16709738 CGGAAGGTTGCGGCAGCAGGATCGGCAGCACACAGAGGGGGACCTAG-CCGATCCCCGGCTTGTG
754 TAGAGGGTTGCAGCAGCAAGATCGGCAGCATGCAGAGGGGGACC-AGACCGATCCCCGGCTTACG
* * * *
16709802 CATCCCACCCCTCTAGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATAC-A
818 CATCCCACCCCTCTAGCCGGATGAGCGCCCGAACGCTCATTTCGTGGGTTAACTTAGGCATACGA
* *
16709866 GAGTTC-TTTCTCAGTCTAAG
883 -AGTTCATTCCT-AGTCTAAC
* * * * * * * * *
16709886 CATACGGAGTTCATTCCCAGTCTAAAATCGGATCGGACCGAAGGTTACGACAGCACATGCTAGGC
1 CATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT-TGGCAGCACATGCTGGGC
* * * * * *
16709951 TTGGGCATGTGCTGGTGACGCATTTTTCTTCATTGGGGCACCATCGTCGGAGCATCG
65 TCGGGCATGTGCTGGAGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCG
16710008 ACACATAGAA
Statistics
Matches: 6061, Mismatches: 821, Indels: 603
0.81 0.11 0.08
Matches are distributed among these distances:
809 3 0.00
810 1 0.00
811 1 0.00
812 4 0.00
813 4 0.00
814 2 0.00
815 3 0.00
816 1 0.00
817 6 0.00
818 3 0.00
819 70 0.01
820 6 0.00
821 1 0.00
822 4 0.00
823 4 0.00
824 2 0.00
825 3 0.00
826 4 0.00
827 1 0.00
828 1 0.00
831 3 0.00
832 2 0.00
833 2 0.00
834 2 0.00
835 2 0.00
837 1 0.00
838 14 0.00
839 4 0.00
841 2 0.00
844 3 0.00
845 148 0.02
846 8 0.00
847 7 0.00
848 6 0.00
849 2 0.00
851 1 0.00
853 5 0.00
855 158 0.03
856 265 0.04
857 389 0.06
858 104 0.02
859 332 0.05
860 93 0.02
861 68 0.01
862 1 0.00
863 4 0.00
864 37 0.01
865 8 0.00
866 9 0.00
867 7 0.00
868 4 0.00
869 3 0.00
871 2 0.00
872 1 0.00
873 3 0.00
874 18 0.00
875 84 0.01
876 2 0.00
877 3 0.00
878 3 0.00
879 5 0.00
880 5 0.00
881 5 0.00
882 1 0.00
883 4 0.00
884 119 0.02
885 274 0.05
886 100 0.02
887 4 0.00
888 2 0.00
889 2 0.00
890 3 0.00
892 6 0.00
893 44 0.01
894 82 0.01
895 674 0.11
896 166 0.03
897 220 0.04
898 77 0.01
899 40 0.01
900 650 0.11
901 317 0.05
902 161 0.03
903 611 0.10
904 168 0.03
905 115 0.02
906 7 0.00
907 95 0.02
908 169 0.03
909 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (901 bp):
CATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTTGGCAGCACATGCTGGGCT
CGGGCATGTGCTGGAGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAAC
CTGACCTGCGGCATTGGGGTTCCGACGATCGGGGGTCCTGGGGGGGTGTCCGCACATGATGTGCG
ATGGGTGTGGTACTCGGCCCATTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
TCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACCACCAGTAGCCATTAAAGTGTTTGAAATGG
GGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGACTACCAAGTTTGGGGCCAAAACTCCTTGCGAAAAAAT
TTTAAAAAATCCCGAACCACAAAAAGTTTTAAAAATCATAAAAAATAGAAAACGAGTCGTATTGC
CATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACGCAGAAATATGAAGATGTGACTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTAGCCGGCATAGTCGCCCGCCACCGCCGCCTGCTCGTTTCATCGATTGGCTCAG
GCATACAGAGTTCATTCCCAGCATAAGATCAGACCAAATAGAGGGTTGCAGCAGCAAGATCGGCA
GCATGCAGAGGGGGACCAGACCGATCCCCGGCTTACGCATCCCACCCCTCTAGCCGGATGAGCGC
CCGAACGCTCATTTCGTGGGTTAACTTAGGCATACGAAGTTCATTCCTAGTCTAAC
Found at i:16707192 original size:26 final size:26
Alignment explanation
Indices: 16707163--16707215 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16707153 GTTGACTTAG
*
16707163 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
16707189 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
16707215 G
1 G
16707216 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:16708118 original size:26 final size:27
Alignment explanation
Indices: 16708067--16708120 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
16708057 GTTGACTTGG
* *
16708067 GCATACGGTGTTCATTTCCCATTCTAA
1 GCATACGGAGTTCATTTCCCAGTCTAA
*
16708094 GCATACGGAGTTCA-TTCCTAGTCTAA
1 GCATACGGAGTTCATTTCCCAGTCTAA
16708120 G
1 G
16708121 ATCAGACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 11 0.46
27 13 0.54
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.33
Consensus pattern (27 bp):
GCATACGGAGTTCATTTCCCAGTCTAA
Found at i:16708991 original size:26 final size:26
Alignment explanation
Indices: 16708962--16709014 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16708952 GCTGACTTAG
* *
16708962 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16708988 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16709014 G
1 G
16709015 ATCGGACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16709453 original size:21 final size:20
Alignment explanation
Indices: 16709423--16709495 Score: 110
Period size: 21 Copynumber: 3.5 Consensus size: 20
16709413 CAAAAATCCT
16709423 TCTGAAAAAATTTTGAAAAAA
1 TCTGAAAAAATTTT-AAAAAA
16709444 TCTCGAAAAAATTTTAAAAAA
1 TCT-GAAAAAATTTTAAAAAA
16709465 TCTTGAAAAAATTTTAAAAAA
1 TC-TGAAAAAATTTTAAAAAA
16709486 TCATGAAAAA
1 TC-TGAAAAA
16709496 TAGAGAACGA
Statistics
Matches: 49, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
21 37 0.76
22 12 0.24
ACGTcount: A:0.58, C:0.07, G:0.07, T:0.29
Consensus pattern (20 bp):
TCTGAAAAAATTTTAAAAAA
Found at i:16709494 original size:11 final size:11
Alignment explanation
Indices: 16709425--16709495 Score: 83
Period size: 11 Copynumber: 6.6 Consensus size: 11
16709415 AAAATCCTTC
*
16709425 TGAAAAAATTT
1 TGAAAAAATCT
16709436 TGAAAAAATCT
1 TGAAAAAATCT
*
16709447 CGAAAAAAT-T
1 TGAAAAAATCT
*
16709457 TTAAAAAATCT
1 TGAAAAAATCT
16709468 TGAAAAAAT-T
1 TGAAAAAATCT
* *
16709478 TTAAAAAATCA
1 TGAAAAAATCT
16709489 TGAAAAA
1 TGAAAAA
16709496 TAGAGAACGA
Statistics
Matches: 50, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
10 17 0.34
11 33 0.66
ACGTcount: A:0.59, C:0.06, G:0.07, T:0.28
Consensus pattern (11 bp):
TGAAAAAATCT
Found at i:16709895 original size:26 final size:26
Alignment explanation
Indices: 16709859--16709910 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16709849 GTTGACTTAG
* *
16709859 GCATACAGAGTTCTTTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
16709885 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16709911 AATCGGATCG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16710319 original size:26 final size:26
Alignment explanation
Indices: 16710290--16710342 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16710280 ATTGACTTAG
*
16710290 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16710316 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16710342 G
1 G
16710343 ATCGGACATG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16710777 original size:11 final size:11
Alignment explanation
Indices: 16710758--16710830 Score: 55
Period size: 11 Copynumber: 6.9 Consensus size: 11
16710748 CCAAAAATCC
*
16710758 TTTCGAAAAAA
1 TTTCAAAAAAA
16710769 TTTC-AAAAAA
1 TTTCAAAAAAA
* * *
16710779 TCTCGACAAAA
1 TTTCAAAAAAA
16710790 TTT--AAAAAA
1 TTTCAAAAAAA
*
16710799 TCTCAAAAAAA
1 TTTCAAAAAAA
*
16710810 TCTCAAAAAAA
1 TTTCAAAAAAA
16710821 TGTT-AAAAAA
1 T-TTCAAAAAA
16710831 TCCTGAAAAA
Statistics
Matches: 52, Mismatches: 6, Indels: 8
0.79 0.09 0.12
Matches are distributed among these distances:
9 7 0.13
10 9 0.17
11 35 0.67
12 1 0.02
ACGTcount: A:0.59, C:0.12, G:0.04, T:0.25
Consensus pattern (11 bp):
TTTCAAAAAAA
Found at i:16710798 original size:20 final size:21
Alignment explanation
Indices: 16710760--16710819 Score: 86
Period size: 20 Copynumber: 2.9 Consensus size: 21
16710750 AAAAATCCTT
16710760 TCGAAAAAATTTCAAAAAATC
1 TCGAAAAAATTTCAAAAAATC
*
16710781 TCGACAAAATTT-AAAAAATC
1 TCGAAAAAATTTCAAAAAATC
* *
16710801 TCAAAAAAATCTCAAAAAA
1 TCGAAAAAATTTCAAAAAA
16710820 ATGTTAAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
20 17 0.50
21 17 0.50
ACGTcount: A:0.60, C:0.15, G:0.03, T:0.22
Consensus pattern (21 bp):
TCGAAAAAATTTCAAAAAATC
Found at i:16710828 original size:21 final size:21
Alignment explanation
Indices: 16710804--16710853 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
16710794 AAAAATCTCA
16710804 AAAAAAT-CTCAAAAAAATGTT
1 AAAAAATCCT-AAAAAAATGTT
* *
16710825 AAAAAATCCTGAAAAAATTTT
1 AAAAAATCCTAAAAAAATGTT
16710846 AAAAAATC
1 AAAAAATC
16710854 ATGAAAAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
21 24 0.92
22 2 0.08
ACGTcount: A:0.62, C:0.10, G:0.04, T:0.24
Consensus pattern (21 bp):
AAAAAATCCTAAAAAAATGTT
Found at i:16710858 original size:21 final size:21
Alignment explanation
Indices: 16710815--16710861 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
16710805 AAAAATCTCA
*
16710815 AAAAAATGTTAAAAAATCCTG
1 AAAAAATGTTAAAAAATCATG
*
16710836 AAAAAATTTTAAAAAATCATG
1 AAAAAATGTTAAAAAATCATG
16710857 AAAAA
1 AAAAA
16710862 TAGAAAACGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.64, C:0.06, G:0.06, T:0.23
Consensus pattern (21 bp):
AAAAAATGTTAAAAAATCATG
Found at i:16711274 original size:26 final size:26
Alignment explanation
Indices: 16711237--16711289 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16711227 GTTGACTTAG
* *
16711237 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCACAGTCTAA
16711263 GCATACGAAGTTCATTCACAGTCTAA
1 GCATACGAAGTTCATTCACAGTCTAA
16711289 G
1 G
16711290 ATCAGAATGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCACAGTCTAA
Found at i:16712180 original size:25 final size:26
Alignment explanation
Indices: 16712130--16712182 Score: 81
Period size: 25 Copynumber: 2.1 Consensus size: 26
16712120 TGGGTTAACT
*
16712130 TAGGCATACAAAGTTCATTCCTAGTC
1 TAGGCATACAAAGTTCATTCCCAGTC
*
16712156 TAGGCATACGAA-TTCATTCCCAGTC
1 TAGGCATACAAAGTTCATTCCCAGTC
16712181 TA
1 TA
16712183 AGATCAAACC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 14 0.56
26 11 0.44
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (26 bp):
TAGGCATACAAAGTTCATTCCCAGTC
Found at i:16713960 original size:26 final size:26
Alignment explanation
Indices: 16713924--16713976 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16713914 GTTAACTTAG
* *
16713924 GCATATGGAGTTCATTCCTAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
16713950 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
16713976 G
1 G
16713977 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:16714696 original size:902 final size:898
Alignment explanation
Indices: 16710815--16714758 Score: 5029
Period size: 891 Copynumber: 4.4 Consensus size: 898
16710805 AAAAATCTCA
* * * *
16710815 AAAAAATGTTAAAAAATCCTG-A---AAAAATTTTAAAAAATCATGAAAAATAGAAAACGAGTCG
1 AAAAAATTTTAAAAAATCCTGAACCCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* *
16710876 TCTCT-CCATGAAACTTCGCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAA
66 TCT-TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * * *
16710940 TGG-ATTCGCAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
130 TGGCATTGGCATGCAAAAATATGAAGATATGCATAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * ** * * *
16711004 TTGCGCATCTCATCTCCCTGGCAGGCGTAGTACCCATCCGCCCGCCTGCCCACTGGTTTCGTCGG
195 TTGCGCATCCCGTCTCTCTGGC-CGCGTAGTGCCCGCCCG-CCGCCCGCCCGCTCGTTTCGTCGG
* * ** * * ** *
16711069 TTGG-TATAGGCATACGGAATTCATTCCCAGTCTAAGATCAAATTAGACCAAGCGTTACGATAGT
258 TTGGCT-TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGC
* ** * ** * *
16711133 AGGATTGACAGCGTGCAGAGGGGGACCCGGTCGATCCCCACCTTGTGCATTCCGCCCCTCTGGCC
322 AGGATTGGCAGCACGCAGAGAGGGACCCGACCGATCCCCAGCTTGTGCATCCCGCCCCTCTGGCC
* * *
16711198 GGCTGAGCACCCACATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
387 GGCTGAGCACCCACA--CTCGTTTCGTGGGTTAACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * *
16711263 GCATACGAAGTTCATTCACAGTCTAAGATCAGAA-TGGACCAAGGCTTACGACAGCACATGCTGG
450 GCATACGGAGTTCATTCCCAGTCTAAGATCA-AACTGGACCAAGGGTTGCGACAGCACATGCTGG
*
16711327 GCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCG-CGGAG
514 GCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAG
*
16711391 AACCTGACAGCGGCATTGGGGTTCCGACGATCGGGGGGATC--GGGGGGTGTGCGCACATGATGT
579 AACCTGACGGCGGCATTGGGGTTCCGACGATCGGGGGG-TCAGGGGGGGTGTGCGCACATGATGT
* * * *
16711454 GTGATGGGTGC-CGTACTTGGCCCTTATATTGTCCCCCTATCCCTCATCAAACCTCGAGAACTCA
643 GCGATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*** * *
16711518 CACAGTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCTTTAAAGTGT-TAGGA
708 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTA-AA
* *
16711582 ATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTT
772 ATTGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * ** * *
16711647 TATGCATGCCAAAAAAAAATACCAGGATCACGTCTACCAACCTTGGGGCCAAAACTCCTTCTG
837 TGTGCATGCC-AAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCG
* * *
16711710 AAAAAATTTTAAAAAAT-CTCGAACCCTAAAAAGTTT-TAAAATCGTGAAAAATAAAAAATGAGT
1 AAAAAATTTTAAAAAATCCT-GAACCC-AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
* *
16711773 CGTCTTCCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCATAAAA
64 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
*
16711838 ATGGCATTGGCATGCAAAAATATGAAG--ATGCAAATAAACCCACCTACCACCCTATCGATCCAT
129 ATGGCATTGGCATGCAAAAATATGAAGATATGC--ATAAACCCACCTACCACCCTATCGATCCAC
* * * * *
16711901 GGCATGCACATCCCGTCTCTCTGGCCGACGTAATGCCCGCCCGTCTGCCCGCCCGATCGTTTCGT
192 GGCTTGCGCATCCCGTCTCTCTGGCCG-CGTAGTGCCCGCCCG-CCGCCCGCCCGCTCGTTTCGT
** *
16711966 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGGCCAGACCAAGGGTTGCGGCA
255 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCA
* * **
16712031 GC-GGATTTGCTGCACGCAGAGAGGGACCCGA-CGAT-CCTGGCTTGTGCATCCCGCCCCTCTGG
320 GCAGGATTGGCAGCACGCAGAGAGGGACCCGACCGATCCCCAGCTTGTGCATCCCGCCCCTCTGG
* * * *
16712093 CTGGCTGAGCACCACACGCTCGTTTCGTGGGTTAACTTAGGCATACAAAGTTCATTCCTAGTCTA
385 CCGGCTGAGCACC-CACACTCGTTTCGTGGGTTAACTTAGGCATACAGAGTTCATTCCCAGTCTA
* * * ** *
16712158 GGCATAC-GAATTCATTCCCAGTCTAAGATCAAACCGGACCGTGGGTTGCGGCAGCACATGCTGG
449 AGCATACGGAGTTCATTCCCAGTCTAAGATCAAACTGGACCAAGGGTTGCGACAGCACATGCTGG
** * *
16712222 GCTC-GAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGATCATCGCGGGA
514 GCTCAG-GCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGA
* * * * * * *
16712286 GAACCTAACCGTGGCATTGGGGTTCCGGCGATCGGGGGG-CAGGGGGTGTTTGTGCACATGATGT
578 GAACCTGACGGCGGCATTGGGGTTCCGACGATCGGGGGGTCAGGGGGGGTGTGCGCACATGATGT
* *
16712350 GCGATGGGTGCTGGTACTTGGGCCATATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCG
643 GCGATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
16712415 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
708 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
* *
16712480 TTGGGACACATTTTTCAAATGGCCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
773 TTGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
16712545 GTGCATGCCAAAAAAAATACAAGGATCATGTCTACCATGTTTGGGGCCAAAAATCTTTCCG
838 GTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCG
* * * * *
16712606 AAGAAATTTTAAAAAATCCTAAACTACAAAAA-TTTCAAAACTTGTGAAAAATAGAAAACGAGTC
1 AAAAAATTTTAAAAAATCCTGAAC-CCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* *
16712670 GTCTTGCCATGAAACTTCACATGAAGCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
65 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*
16712735 TGGCATTGACATGCAAAAATATGAAG--ATGCAAATAAACCCACCTACCACCCTATCGATCCACG
130 TGGCATTGGCATGCAAAAATATGAAGATATGC--ATAAACCCACCTACCACCCTATCGATCCACG
* * *
16712798 CCATGCGCATCCCGTCTCTCTGGCCGACGTAGT-----------GCCCGCCCGCTCGTTTCGTTG
193 GCTTGCGCATCCCGTCTCTCTGGCCG-CGTAGTGCCCGCCCGCCGCCCGCCCGCTCGTTTCGTCG
* *
16712852 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGGCAGT
257 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGC
* * * * ** ** *
16712917 AGGATTTGCTGCACGTAGAGAGGGACCCGACCGATCCCCGGCTTGCCCATCCTACCCCTCTGGCT
322 AGGATTGGCAGCACGCAGAGAGGGACCCGACCGATCCCCAGCTTGTGCATCCCGCCCCTCTGGCC
* * * * *
16712982 GGCTGAGCACCCGCACGTTGTTTCGTGGGTTGACCTAGGCATATAGAGTTCATTCCCAGTCTAAG
387 GGCTGAGCACCCACAC-TCGTTTCGTGGGTTAACTTAGGCATACAGAGTTCATTCCCAGTCTAAG
* *
16713047 CATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACCACGGGTTGCG-CTAGCACATGCTGGG
451 CATACGGAGTTCATTCCCAGTCTAAGATCAAACTGGACCAAGGGTTGCGAC-AGCACATGCTGGG
* * * * *
16713111 CTTAGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCAGATCATCGCGGGAGA
515 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * * * *
16713176 ACCTAACCGGTGGCATTGCGGTTCCGACGATCGGGGGGGCCAGGGGGTGTTTGTGCACATGATGT
580 ACCTGA-CGGCGGCATTGGGGTTCCGACGATC-GGGGGGTCAGGGGGGGTGTGCGCACATGATGT
* *
16713241 GCGATGGGTGCTGGTACTTGGGCCATATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCG
643 GCGATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
16713306 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
708 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
* * *
16713371 TTGGGACACTTTTTTGAAATGGCCACAAAATCTTGTACACTTCGTGTTTTTGGCTGAATTTTTTT
773 TTGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
16713436 GTGCATGCCAAAAAAAATACAAGGAGCAGGTCTACCATGTTT-GGGCCAAAAATCTTTCCG
838 GTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCG
* * * * *
16713496 AAGAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAGAACGAGTC
1 AAAAAATTTTAAAAAATCCTGAACC-CAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* *
16713561 GTCTTGCCATGAAACTTCACATGAAGCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
65 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * * *
16713626 TGGCATTGGCATGCAAAAATATAAAGATGTACCTAAACCCACCTACCACCCTTTCGATCCACGGC
130 TGGCATTGGCATGCAAAAATATGAAGATATGCATAAACCCACCTACCACCCTATCGATCCACGGC
** * ** * *
16713691 TTGCATATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCTTGCCCACTCATTTCGTCGG
195 TTGCGCATCCCGTCTCTCTGGCC-GCGTAGTGCCCGCCCGCC-GCCCGCCCGCTCGTTTCGTCGG
* * * * * * *
16713756 TTGGCTTAAGCATACGGAGTTCATTCACAATCTAAGATCGGATCAGACCGAGGGTTGCGGTAGCA
258 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCA
* * * *
16713821 AGATCGGCAGCACGCA-ATGGGGGACTCGACCGATCCCCAGCTTGTGCATCCCGCCCCTCTGGCC
323 GGATTGGCAGCACGCAGA-GAGGGACCCGACCGATCCCCAGCTTGTGCATCCCGCCCCTCTGGCC
* * ** * *
16713885 GACTGAGCGCCCGTACACTCGTTTCGTGGGTTAACTTAGGCATATGGAGTTCATTCCTAATCTAA
387 GGCTGAGCACCC--ACACTCGTTTCGTGGGTTAACTTAGGCATACAGAGTTCATTCCCAGTCTAA
** *
16713950 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTGTGACAGCACATGCTGGG
450 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACTGGACCAAGGGTTGCGACAGCACATGCTGGG
* * * * *
16714015 CTCGGGCATGAGCTGGTG-CGCATTTTTCTTCACCGGGGCACCATAGTCGGAGCAGCACCGGAGA
515 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * *
16714079 ACCTGATTGGCGGCATTGGGGTTCCGATGATCGGGGTGTC-GGGGGGGTGTGCGCACATGATGTG
580 ACCTGA-CGGCGGCATTGGGGTTCCGACGATCGGGGGGTCAGGGGGGGTGTGCGCACATGATGTG
* * * * *
16714143 TGATGGGTGCTGGTTCTTGGCCCTTATAGTGGCCCCCTATCCCTAATCAAACCTCGAGAACTCAC
644 CGATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
16714208 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAT
709 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
* *
16714273 TGGGACACTCTTTTCAAATGGCAACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
774 TGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
16714338 TGCATGCCAACAAAAAGACAAGGATCATGTCTACCAAGTTTTGGGCCAAAACTCCATCCG
839 TGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCG
*
16714398 AAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATGGTGAAAAATAGAAAACGAGTC
1 AAAAAATTTTAAAAAATCCTGAACC-CAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
*
16714463 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGTGACCATTGTATGAATTTACAAGCCATAAAAA
65 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
** * * * * *
16714528 TGGCATTGGCACACAGAAATATGAAGATATGCATAAACACACCTGCCGCCCTATCGATCCATGGC
130 TGGCATTGGCATGCAAAAATATGAAGATATGCATAAACCCACCTACCACCCTATCGATCCACGGC
* * * * *
16714593 TTGCGCAACCCGTCTCTCTAGCCAGTGTAGTGCCCGCCCGTCCGCCCGCCTGCTCATTTCGTCGG
195 TTGCGCATCCCGTCTCTCTGGCC-GCGTAGTGCCCGCCCG-CCGCCCGCCCGCTCGTTTCGTCGG
* * * * * *
16714658 TTGGCTTATGCTTACAGAGTTCATTCCCAGTTTAAGATCAGACCGGACGAAGGGTTGCGGCAGCA
258 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCA
** * * * * *
16714723 GGATCAGTATCACGCAGAGGGGGGCCCAACCGATCC
323 GGATTGGCAGCACGCAGAGAGGGACCCGACCGATCC
16714759 TCGGAATTGG
Statistics
Matches: 2682, Mismatches: 310, Indels: 107
0.87 0.10 0.03
Matches are distributed among these distances:
884 79 0.03
885 28 0.01
886 7 0.00
887 82 0.03
888 117 0.04
889 23 0.01
890 51 0.02
891 429 0.16
892 1 0.00
893 2 0.00
894 6 0.00
895 120 0.04
896 359 0.13
897 214 0.08
898 13 0.00
899 110 0.04
900 155 0.06
901 238 0.09
902 328 0.12
903 200 0.07
904 116 0.04
905 4 0.00
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (898 bp):
AAAAAATTTTAAAAAATCCTGAACCCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
GGCATTGGCATGCAAAAATATGAAGATATGCATAAACCCACCTACCACCCTATCGATCCACGGCT
TGCGCATCCCGTCTCTCTGGCCGCGTAGTGCCCGCCCGCCGCCCGCCCGCTCGTTTCGTCGGTTG
GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCAGGA
TTGGCAGCACGCAGAGAGGGACCCGACCGATCCCCAGCTTGTGCATCCCGCCCCTCTGGCCGGCT
GAGCACCCACACTCGTTTCGTGGGTTAACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATAC
GGAGTTCATTCCCAGTCTAAGATCAAACTGGACCAAGGGTTGCGACAGCACATGCTGGGCTCAGG
CATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGA
CGGCGGCATTGGGGTTCCGACGATCGGGGGGTCAGGGGGGGTGTGCGCACATGATGTGCGATGGG
TGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATTGGGACA
CTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
CAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCG
Found at i:16716421 original size:27 final size:25
Alignment explanation
Indices: 16716391--16716452 Score: 65
Period size: 23 Copynumber: 2.5 Consensus size: 25
16716381 GGTTGACTAG
*
16716391 GCATACGGAGTTTCATTCTCAATCTAA
1 GCATACGGAGTTTCA-TC-CAAGCTAA
* *
16716418 GCATATGGAG--TCATCCCAGCTAA
1 GCATACGGAGTTTCATCCAAGCTAA
16716441 GCATACGGAGTT
1 GCATACGGAGTT
16716453 ACTGGACCGA
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
23 15 0.52
24 2 0.07
25 3 0.10
27 9 0.31
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (25 bp):
GCATACGGAGTTTCATCCAAGCTAA
Found at i:16716765 original size:892 final size:895
Alignment explanation
Indices: 16714769--16716833 Score: 2237
Period size: 902 Copynumber: 2.3 Consensus size: 895
16714759 TCGGAATTGG
**
16714769 GGTTCCGACGATCGAGGGGGCCGGGGGAGGTGTAAGCACATGATGTGCGATGGGTGCTGGTACTT
1 GGTTCCG-CGATCG-GGGGGCCGGGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* *
16714834 GGCTCGTATATTGGCCCCCTGTCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
63 GGCCCTTATATTGGCCCCCTGTCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* * * *
16714899 TGAGATTTTACAGGTTTGCTGCCAGTAGGCGTTAAAGTGTTTGAAATGGGGATACTTTTTTCAAA
128 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* * *
16714964 AGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCAT-CCCAAAAAAGTA
193 AGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAAAAAAAATA
* * **
16715028 CAAGGATTACGTCTTCCAAGTTTCGAGCCAAATCTCCTTCCAAAAAAATTTTAAAAAATCCTAAA
258 CAAGGATCACGTCTACCAAGTTTCGAGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCTAAA
* ** * *
16715093 CCACAAAAAGTTTGAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGA
323 CCACAAAAAGTTTAAAAATCATGAAAAATAGAAAACAAGTCATCTTGCCATGAAACTTAACGTGA
*
16715158 AGGATTAAGGGACCATTGTATGAAGTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGA
388 AGGATTAAGGGACCACTGTATGAAGTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGA
*
16715223 AGATGTGCATAACCACCTACCAACTACCCATCCACAGGCTTGCGCATCTCGGTCTCTTAGCGCGG
453 AGATGTGCATAACCACCTACCAACTACCCATCCACAGGCTTGCGCATCTCGGTCTCTTAGCGCCG
16715288 CATAGAGCCCGCCCGCTCGCGTCCGCCTGCTACGTTACCATCGATCTGGCTTAAGGCATACAGAG
518 CATAGAG--CG-CCGCTCGCG-CCGCCTGCTACGTTACCATCGATCTGGCTTAAGGCATACAGAG
* *
16715353 TTTCATTCCCAGTCTAAGAGTCAAAAATCAGACGAGAGTTGTGCAGCAGGATCAGCGAGCACACA
579 TTTCATTCCCAGCCTAAGAGTC-AAAATCAGACGAGAGTTGGGCAGCAGGATCAGCGAGCACACA
* * * * * * * *
16715418 GAAGGGAATCGGGCGACCTAGGTTGGCACATTGCCACCCCTCTGGTCGCTGAGCGCCCTGCATGC
643 GAAGGGAACCGAGCAACCCAGCTTGG-ACATAGCCACCCCTCTGGTCGCTAAGCGCCCTGCATAC
16715483 TGCATTCTGTGGGTTTGACTTAGGCACGATACGAATGTTCAATTCCAGACTAAGCATACGGAGTT
707 TGCATTCTGTGGGTTTGACTTAGG-ACGATACGAATGTTCAATTCCAGACTAAGCATACGGAGTT
* * * * *
16715548 CATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTAGCATATGTTGGGCTCGAGCATCTG
771 CATTCCCAGTCTAAGATGGGACCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGAGCATCTG
* * ** * *
16715613 CTGGCACCATATTTTTCTCCACTGGGGCACCATCATCGAAGAACCTGACTGGTGGCATTA
836 CTGGCACCACATTTTTCTCCACTGGGGCACCATCATCGAAGAACCAGACTGCCGACAGTA
* * *
16715673 GGTTCCGGCGATC-GGGGGACGGGAGGGGTGTGCGCACATGATGTGTGATGGGTGCTAGTACTTG
1 GGTTCC-GCGATCGGGGGGCCGGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
**
16715737 GCCCTTATATTGGCCCCCTGTCCCTCATCAAACCTTAAGAACTCACACCCCCTTAAAGAGCATTT
64 GCCCTTATATTGGCCCCCTGTCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* * * *
16715802 GAGATTTTACAGGTTTGCTACTAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAC
129 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAA
* **
16715867 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTGTCGTGTGCATGCCAAAAAAAATAC
194 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAAAAAAAATAC
* * * * * *
16715932 AACGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAATTTTTAAAAAAT-CTCAAA
259 AAGGATCACGTCTACCAAGTTTCGAGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCT-AAA
** *
16715996 CC-GTAAAAGTTTCAAAAATCTTGAAAAATAGAAAACAAGT-ATCTTGCCATGAAACTTAACGTG
323 CCACAAAAAGTTT-AAAAATCATGAAAAATAGAAAACAAGTCATCTTGCCATGAAACTTAACGTG
* * *
16716059 AAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTCGAAATATG
387 AAGGATTAAGGGACCACTGTATGAAGTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATG
* * *** * * * *
16716124 AAGATGTGCCTAAACCCACCTACCACCCTATTGATCTAC-GGCTTGTGCTTC-CTGTCTCTCTAG
452 AAGATGTGCAT-AA-CCACCTACCA-ACTACCCATCCACAGGCTTGCGCATCTCGGTCTCT-TAG
* * * * *
16716187 C-CCGCGTAG-G-G-C-C-CGC-CCGCCTGCT-CGTT-TCGTCGGT-TGGCTT-AGGCATACGGA
513 CGCCGCATAGAGCGCCGCTCGCGCCGCCTGCTACGTTACCATCGATCTGGCTTAAGGCATACAGA
* * * *
16716241 G-TTCATTACCCAGGCCTAAGA-TC-AGA-CGGACTGAGGGTTGGGGGCAGCAGGATCGGC-AG-
578 GTTTCATT-CCCA-GCCTAAGAGTCAAAATCAGAC-GAGAGTT--GGGCAGCAGGATCAGCGAGC
**** * * * * * *
16716300 ATGTGGAGGGGGACCCGATCAATCCCCGACTT-G-CGTAGCCCGCCCCTCT-GTCCGACTAAGCG
638 ACACAGA-AGGGAACCGAGCAA-CCCAG-CTTGGACATAG-CCACCCCTCTGGT-CG-CTAAGCG
* * * *
16716362 CCC-GCA-ACTTCGTT-TTTGTGG-TTGAC-TAGG-C-ATACGGA-GTTTC-ATTCTCA-ATCTA
697 CCCTGCATACTGCATTCTGTG-GGTTTGACTTAGGACGATACGAATG-TTCAATTC-CAGA-CTA
* **
16716417 AGCATATGGAG-TCA-TCCCAG-CTAAGCATACGGAGTTACTGGACCGAGGG-TGCCAGCAGCAC
758 AGCATACGGAGTTCATTCCCAGTCTAAG-AT--GG-G--ACCAGACCGAGGGTTG-CAGCAGCAC
* * *
16716478 ATGCTGGGCTCGAGTAT-TGCTGGTGC-CCACA-TTTTCTCGC-C-GGGGCACCATCGCTGGAGG
816 ATGCTGGGCTCGAGCATCTGCT-G-GCACCACATTTTTCTC-CACTGGGGCACCATC-ATCGA--
* *
16716538 CGATCGCCAGAAACCTGACCGACAGGT-
875 AGA--ACCAG--A-CTG-CCGACA-GTA
*
16716565 GGTTCCAGCGATCGGGGGGCCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
1 GGTTCC-GCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* * *
16716630 CCCTTATATTGGCCCCCTATGCCTCATCAAACCTCGAGAACTCACACCCCCATAAAGAGCATTTG
65 CCCTTATATTGGCCCCCTGTCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* * * * *
16716695 AGATTTTACGGGTTTGCTGCCAATACCCATTAAAGTGTCTGAAATGGGGACACCTTTTTCAAATG
130 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAAG
*
16716760 GTCACAAAATCTTGTACACTTC-AGGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAATA
195 GTCACAAAATCTTGTACACTTCGA-GTTTTTAGCTAAATTTTTTTGTGCATGCC-AAAAAAAATA
16716824 CAAGGATCAC
258 CAAGGATCAC
16716834 ATCGTATTTT
Statistics
Matches: 984, Mismatches: 130, Indels: 105
0.81 0.11 0.09
Matches are distributed among these distances:
879 5 0.01
880 8 0.01
881 9 0.01
882 25 0.03
883 13 0.01
884 17 0.02
885 42 0.04
886 16 0.02
887 23 0.02
888 33 0.03
889 44 0.04
890 16 0.02
891 9 0.01
892 222 0.23
893 37 0.04
895 3 0.00
896 1 0.00
897 1 0.00
899 1 0.00
902 311 0.32
903 104 0.11
904 35 0.04
905 9 0.01
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (895 bp):
GGTTCCGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
CCTTATATTGGCCCCCTGTCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAAGG
TCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAAAAAAAATACAA
GGATCACGTCTACCAAGTTTCGAGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCTAAACCA
CAAAAAGTTTAAAAATCATGAAAAATAGAAAACAAGTCATCTTGCCATGAAACTTAACGTGAAGG
ATTAAGGGACCACTGTATGAAGTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGA
TGTGCATAACCACCTACCAACTACCCATCCACAGGCTTGCGCATCTCGGTCTCTTAGCGCCGCAT
AGAGCGCCGCTCGCGCCGCCTGCTACGTTACCATCGATCTGGCTTAAGGCATACAGAGTTTCATT
CCCAGCCTAAGAGTCAAAATCAGACGAGAGTTGGGCAGCAGGATCAGCGAGCACACAGAAGGGAA
CCGAGCAACCCAGCTTGGACATAGCCACCCCTCTGGTCGCTAAGCGCCCTGCATACTGCATTCTG
TGGGTTTGACTTAGGACGATACGAATGTTCAATTCCAGACTAAGCATACGGAGTTCATTCCCAGT
CTAAGATGGGACCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGAGCATCTGCTGGCACCAC
ATTTTTCTCCACTGGGGCACCATCATCGAAGAACCAGACTGCCGACAGTA
Found at i:16718857 original size:454 final size:452
Alignment explanation
Indices: 16717992--16718886 Score: 1233
Period size: 454 Copynumber: 2.0 Consensus size: 452
16717982 AAAAAATTTT
** **
16717992 AAAAAATCTCGAACAACAAAAAATTTTGAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
1 AAAAAATCTCGAACAACAAAAAATTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
*
16718057 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
66 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA-TTACAAGCCATAAAAATGGCACTGGC
* * * *
16718122 ACGCAGAAATATGAAGATGTGCCTAAACCCACGTACCACACTATTGATCCATGGCTTGCGCATCC
130 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACACTATCGATCCACGGCTTACGCATCC
* * *
16718187 CGTCTCTCCGGTCAGCGTAGTGCCCGCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATA
195 CATCTCTCCGGCCAGCGTAGTGCCCGCCCGCCCGCCCACTCATTTCATCGGTTGGCTTAGGCATA
* * * * * * * *
16718252 CGGAGTTCATTCCTAGTCTAAGATCAGACCAGATCGAGGGTTACGGCAGTAGAATCGATAGCACG
260 CGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAAGGTTACAGCAGCAGAATCGACAACACG
* ** * * ** * **
16718317 TAGAGGGGGAATTGGCCGATCCCCAGCTTGCGCATCCCGTCCCTCTGGCTGGTTGAGTGCCCGAA
325 CAGAGGGGGAACCGGCCAATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAACGCCCGAA
* * *
16718382 CGCTCGTTTCGTGGGTTGACTTTGGCATACGGAGTTCATTCCAAGTGTAAGCATACAGAGCTC
390 CGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCAAGTCTAAGCATACAGAGCTC
* **
16718445 AAAAAATCTTGAACTGCAAAAAATTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
1 AAAAAATCTCGAACAACAAAAAATTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
16718510 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG-A-TACAAGCCATAAAAATGGCACTGGCA
66 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTACAAGCCATAAAAATGGCACTGGCA
* *
16718573 CGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCC
131 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACACTATCGATCCACGGCTTACGCATCCC
* * * * *
16718638 ATCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGTCCACCAACTTATTTCGTCGGTTGGCTTAGGC
196 ATCTCTCCGGCCAGCGTAGTGCCCGCCCGCCCG--C-CC-ACTCATTTCATCGGTTGGCTTAGGC
* * *
16718703 ATACGGAGTTCATTCCCAATCTAAGAAT-TGACC-GAACCGAAGGTTGCAGCAGCAGGATCGACA
257 ATACGGAGTTCATTCCCAATCTAAG-ATCAGACCAG-ACCGAAGGTTACAGCAGCAGAATCGACA
* * *
16718766 ACACGCAGAGGGGGACCCGGCCAATCCCCGGCTTGCGTATCCCGCCCCTCTGGCCAGCTGAACGC
320 ACACGCAGAGGGGGAACCGGCCAATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAACGC
*
16718831 CC-ACACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAG
385 CCGA-ACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCAAGTCTAAG
16718887 ATCGGACCGT
Statistics
Matches: 385, Mismatches: 50, Indels: 13
0.86 0.11 0.03
Matches are distributed among these distances:
450 112 0.29
452 2 0.01
453 98 0.25
454 171 0.44
455 2 0.01
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23
Consensus pattern (452 bp):
AAAAAATCTCGAACAACAAAAAATTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTACAAGCCATAAAAATGGCACTGGCA
CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACACTATCGATCCACGGCTTACGCATCCC
ATCTCTCCGGCCAGCGTAGTGCCCGCCCGCCCGCCCACTCATTTCATCGGTTGGCTTAGGCATAC
GGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAAGGTTACAGCAGCAGAATCGACAACACGC
AGAGGGGGAACCGGCCAATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAACGCCCGAAC
GCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCAAGTCTAAGCATACAGAGCTC
Found at i:16720371 original size:862 final size:861
Alignment explanation
Indices: 16718445--16723446 Score: 6086
Period size: 898 Copynumber: 5.7 Consensus size: 861
16718435 TACAGAGCTC
* * *
16718445 AAAAAATCTTGAACTGCAAAAAATTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
1 AAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
*
16718510 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG-A--TACAAGCCATAAAAATGGCACTGGC
66 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* *
16718572 ACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCC
131 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* *
16718637 CATCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGTCCACCAACTTATTTCGTCGGTTGGCTTAGG
196 CGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCG----CCAACTCATTTCGTCGGTTGGCTTAGG
* * * *
16718702 CATACGGAGTTCATTCCCAATCTAAGAATTGACC-GAACCGAAGGTTGCAGCAGCAGGATCGACA
257 CATACGGAGTTCATTCCCAGTCTAAGAATGGACCAG-ACCGAGGGTTGCGGCAGCAGGATCG-CA
* * * * * * *
16718766 ACACGCAGAGGGGGACCCGGCCAATCCCCGGCTTGCGTATCCCGCCCCTCTGGCCAGCTGAACGC
320 GCACACAGAGGGGGACCCGGCCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* *
16718831 CCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCG
385 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG
* * * ** *
16718896 TACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCGTGTGCTGGT-CCAAAGTTTTCTTCGTCG
450 GACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
* * * * * * *
16718960 GGGCACCATCGCTGGAGAACTTGACCGACGGCATTGAGGTTCCAACGATCGGGGGGTCGGGGGGG
515 GGGCACCATCACCGAAGAACCTGACCGACGGCATTGGGGTTCCAGCGATCGGGGGGCCGGGGGGG
* * * * *
16719025 CTGTACGCTCATAATGTACGATGGGTGCTGGTACTTGGCCCTCATATTGG--------CCCTCAT
580 -TGTGCGCACATAATGTGCGATGGGTGCTGGTACTTGGCACTTATATTGGCCCCCTATCCCTCAT
* *
16719082 CAAACCTCGAGAACTCACACCCCCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
644 CAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
16719147 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TCTGAGT
709 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-GAGT
* *
16719211 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAATGATCATGTCTACCAAGTTTGGGGC
773 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
** *
16719276 CAAAACTTGTTCCAAAACAATTTT
838 CAAAACTCCTTCCAAAAAAATTTT
* * * *
16719300 AAAAAATCTTGAATCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCAT
1 AAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* * *
16719365 GAAACCTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATTAAAATGGCTTTGGC
66 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * *
16719430 ACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCTCATCC
131 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
** * ** * *
16719495 TATCTCTCTGGCCGGTGTAGTGCCCTTCTGCCCGCCAACTCGTTTTGTCGGTTGGCTTAGGCATA
196 CGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCAACTCATTTCGTCGGTTGGCTTAGGCATA
* * * * *
16719560 CGGAGTTCATTCCCAGTCTAAGAATGGATCGGACCGAGGGTTACGGTAGCAGGATCAGTAGCACA
261 CGGAGTTCATTCCCAGTCTAAGAATGGACCAGACCGAGGGTTGCGGCAGCAGGATC-GCAGCACA
* * * * *
16719625 CAGAGTGGGACCTGGCCGATCCTCGGCTTGCGCATCTCGCCCCTCCGGCCGACTGAGCGCCCGCA
325 CAGAGGGGGACCCGGCCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
** * * *
16719690 CGCTCGTTTCGTGGGTTGACTTAGAAATACGGAGTTCATTCTCAGTCTAAGATCGGATCGGACCA
390 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
* *
16719755 AGGGTTGTGGCAGCACATGCTGGGCGCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTC-GGGCA
455 AGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
* * * * * * *
16719819 CCATTATCGAAGAACCTGACTGACGGCATTGGGGTTTCTGCGACCGAGGGAGCCGAGGGGGGTGT
520 CCATCACCGAAGAACCTGACCGACGGCATTGGGGTTCCAGCGATCG-GGGGGCCG-GGGGGGTGT
* * * * *
16719884 GCACAGATGATGTGTGATGGGTGCTGGTACTTGGCACTTATATTGGCCCCCTATCCCTCTTCAAA
583 GCGCACATAATGTGCGATGGGTGCTGGTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAA
* * *
16719949 CCTTGAGAACTCACACCCCCTTAAAGAGCATGTAAGATTTTACAAGTTTGCTGCCAGTAGCCATT
648 CCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* * *
16720014 GAAGTGTCTGAAATGGGGACACTGTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTA
713 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * * *
16720079 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTGCCACGTTT-GTGCAAAAA
778 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
*
16720143 CACCTTCCAAAAAAATTTT
843 CTCCTTCCAAAAAAATTTT
** * * **
16720162 AAAAAATCTCGAACAACAAAAAATTTTAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
1 AAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
16720227 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
66 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* *
16720292 ACGCAGAAATTTGAAGATGTGCCTAAACCCACCTACCACACTATCGATCCACGGCTTGCGCATCC
131 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
**
16720357 CGTCTCTCTGGCCGGCGTAGTGCCCG-CTCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCAT
196 CGTCTCTCTGGCCGGCGTAGTGCCCGCCT-GCCCGCCAACTCATTTCGTCGGTTGGCTTAGGCAT
** * * *
16720421 ACGGAGTTCATTCTTAGTCTAAG-ATCGGATCAGACCAAGGGTTGCGGTAGCAGGATCGACAGCA
260 ACGGAGTTCATTCCCAGTCTAAGAAT-GGACCAGACCGAGGGTTGCGGCAGCAGGATCG-CAGCA
* * * * * *
16720485 CGCAGAGGGGGACCTGGTCGATCC-CTGGCTTGCGCATCCCTCCCCTTTGGCCGGTTGAGCGCCC
323 CACAGAGGGGGACCCGGCCGATCCTC-GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* *
16720549 GCACGCTCGTTTCGTGGTTTGACTTAGGCATACGGAATTCATTCCCAGTCTAAGCATACGGAGTT
387 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C---G--
* *
16720614 CATTGCCAGTCTAAGATCAGACCAGACCGAGGGTTTTGGCAGCACATGCTGGGCTCGGGAATGTG
445 ----G--A--C------C-G----GACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTG
* * *
16720679 CTGTTGCCACATTTTTCTTCGTCGGGGCACCATCACC-AGAGAACTTGACCGACGGCATTGGGGT
491 CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGA-AGAACCTGACCGACGGCATTGGGGT
* * * * *
16720743 TCC-GACAATCGGGGGGCTGGGGGCAGCTGTGCGCACATAATGTGTGATGGGTGCTAGTACTTGG
555 TCCAG-CGATCGGGGGGCCGGGGG--GGTGTGCGCACATAATGTGCGATGGGTGCTGGTACTTGG
* * * * *
16720807 CCCTCATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCTCCTTAAAAAGCATTTG
617 CACTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTG
* *
16720872 AGATTTTACAGGTTTCCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATG
682 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* ** ** * *
16720937 GTCACAAAATCTTGTTCACTTCGAGTTTTTAGCTGAATTTTTTTGAACATGTGAAAAAAAATAAA
747 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
* * ** **
16721002 AGGATCACGTCCACCATGTTTAAGGCCAAAACTCCTTCTGAAAAAATTTT
812 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTT
* *
16721052 AAAAAATC-CTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCA
1 AAAAAATCTC-GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
*
16721116 TGAAACCTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
65 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * *
16721181 CATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGGTCCACGGCTTGCGCATC
130 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * * *
16721246 CTGTCTCTCTGGCCGGTGTAGTGCCCTTCC-ACCCGCCAACTCATTTCGTCGGTTAGCTTAGGCA
195 CCGTCTCTCTGGCCGGCGTAGTGCCC-GCCTGCCCGCCAACTCATTTCGTCGGTTGGCTTAGGCA
** * * *
16721310 TATAGAGTTCATTCCCAGTCTAAGAATGGACTAGACCGAGGGTTGCAGCAGCAGGATCAGTAGCA
259 TACGGAGTTCATTCCCAGTCTAAGAATGGACCAGACCGAGGGTTGCGGCAGCAGGATC-GCAGCA
* ** * * *
16721375 CGCAGAGTAGGACCTGGCCGATCCTCAGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
323 CACAGAGGGGGACCCGGCCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
*
16721440 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGAC
388 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* * *
16721505 CGAGGG-TGTGGCAGCACATGCTGGGCTCGGGCATGTGCTAGTGTCGCATTTTTCTTCGT-TGGG
453 CGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * *
16721568 CACCATCACCGGAGAACCTGACCGACGGTAATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTG
518 CACCATCACCGAAGAACCTGACCGACGG-CATTGGGGTTCCAGCGATCGGGGGGCCGGGGGGGTG
* *
16721633 TGCGCACATGATGTGCGATGGGTGCTGGTACTT--CAACCTTATATTGGCCCCCTATCCCACATC
582 TGCGCACATAATGTGCGATGGGTGCTGGTACTTGGC-A-CTTATATTGGCCCCCTATCCCTCATC
* *
16721696 AAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACTAGTAGCC
645 AAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
16721761 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
710 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * *
16721826 TTAGCTGAGTTTTTTTGTGCATGCCAACAATAATACAAGGATCACGTCTACCAAGTTTGGTGCCA
775 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* **
16721891 AAAATCCTTTTGAAAAAAA-TTT
840 AAACTCC-TTCCAAAAAAATTTT
* *
16721913 AAAAAAT-TTGAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTACCA
1 AAAAAATCTCG-AACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
*
16721977 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGG
65 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * * **
16722042 CATGCAAAAATATGAAGATGTGCCTAAACCCACATCCCACCCTATCGATCCATAGCTTGCGCATC
130 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * ** *
16722107 CCGTATCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGT
195 CCGTCTCTCTGGCCGGCGTAGT------------GCCCGCCTGCCCGCCAACTCATTTCGTCGGT
** * * * *
16722172 TGGCTTAGGCATATTGAGTTCATTCCTAGTCTAAGATTGAACCAGACCGAGGTTTGCGGCAGCAG
248 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAATGGACCAGACCGAGGGTTGCGGCAGCAG
* * * * * *
16722237 GATCGGCAGCACATAAAGGGGGACCCGACCGATCCTTGGCTTGCGTATGCCGCCCCTCTGGCCGG
313 GATC-GCAGCACACAGAGGGGGACCCGGCCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * *
16722302 CTGACCGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTTATTCCCAGTCCAAGC
377 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC-T-----TA--G-G--------CA-T---A-C
* * * *
16722367 ATATGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTT-TCGGTAGCACATGCTGGGC
420 ----GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGT-GGCAGCACATGCTGGGC
** * * * * *
16722431 TCGGG-ATGTGCTGGTGCCTTA-TTTT-TTCGCCAGGGCACCATCGCCGGAGAACCTGACCGGCG
480 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGAAGAACCTGACCGACG
* * *
16722493 GTAATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
545 G-CATTGGGGTTCCAGCGATCGGGGGGCCGGGGGGGTGTGCGCACATAATGTGCGATGGGTGCTG
*
16722558 GTACTT--CAACCTTATATTGGCCCCCTATCCCACATCAAACCTTGAGAACTCACACCCCCTTAA
609 GTACTTGGC-A-CTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAA
16722621 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AAATTGGGGACACT
672 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA-TGGGGACACT
** *
16722685 TTTTTTGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCA
736 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* ** **
16722750 AGAAAAATACAAGGATCATATCTACCAAGTTTGGGGCCAAAACTCCATT-TGAAAAAATTTT
801 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCAAAAAAATTTT
* * ** *
16722811 AAAAAATC-CTTAACCTCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
1 AAAAAATCTC-GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* * * *
16722875 TTAAACTTCACGTGAAGGATTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATAGCATTGG
65 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * *
16722940 CATGCAAAAATATGAAGATGTGCCTAAACCGACCTACCACCCTATCGATCCACGGCTTGTGCATC
130 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * ** * *
16723005 CCGTCTCTCTGGCCTGCGTAGTGCCCGCCCGCCGGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAG
195 CCGTCTCTCTGGCCGGCGTAGT----GCCCGCCTGCCCGCCAACTCATTTCGTCGGTTGGCTTAG
* * * *
16723070 GCATACGAAGTTCATTCCTAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATCG-A-
256 GCATACGGAGTTCATTCCCAGTCTAAGAATGGACCAGACCGAGGGTTGCGGCAGCAGGATCGCAG
* * * * * *
16723133 CAGCAC-------GTCCCGGTCGATCCCCGGCTTGTGCATCCCACCCCTCTAGCCGGCTGAGCGC
321 CA-CACAGAGGGGGACCCGGCCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
*
16723191 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCG
385 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG
* * * * * *
16723256 GACCGAGGGTTGCGGCAGTACATGCTGGGTTCGGGCATTTTCTGGTGTCGCATTTTTCTTCGTCG
450 GACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
* * * * * *
16723321 GTGCACCATCGCCGAAGAACTTGACTGGCGGCATTGGGGTTCCAACGATCGGGGGGGCCGGAGGG
515 GGGCACCATCACCGAAGAACCTGACCGACGGCATTGGGGTTCCAGCGATC-GGGGGGCCGG-GGG
*
16723386 GGCTGTGCGCACATAATGTGTGATGGGTGCTGGTACTTGGC-CTTCATATTGGCCCCCTATC
578 GG-TGTGCGCACATAATGTGCGATGGGTGCTGGTACTTGGCACTT-ATATTGGCCCCCTATC
16723447 GCCCCCACCC
Statistics
Matches: 3607, Mismatches: 416, Indels: 243
0.85 0.10 0.06
Matches are distributed among these distances:
854 268 0.07
855 215 0.06
856 18 0.00
857 20 0.01
858 156 0.04
859 10 0.00
860 51 0.01
861 443 0.12
862 444 0.12
863 258 0.07
864 15 0.00
867 1 0.00
868 1 0.00
869 1 0.00
872 3 0.00
873 163 0.05
874 1 0.00
875 3 0.00
877 1 0.00
879 3 0.00
880 1 0.00
881 65 0.02
882 1 0.00
883 1 0.00
884 1 0.00
885 1 0.00
887 6 0.00
888 69 0.02
889 270 0.07
890 508 0.14
891 5 0.00
892 1 0.00
894 1 0.00
895 1 0.00
897 13 0.00
898 518 0.14
899 48 0.01
900 22 0.01
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (861 bp):
AAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
CGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCAACTCATTTCGTCGGTTGGCTTAGGCATA
CGGAGTTCATTCCCAGTCTAAGAATGGACCAGACCGAGGGTTGCGGCAGCAGGATCGCAGCACAC
AGAGGGGGACCCGGCCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGA
GGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCAC
CATCACCGAAGAACCTGACCGACGGCATTGGGGTTCCAGCGATCGGGGGGCCGGGGGGGTGTGCG
CACATAATGTGCGATGGGTGCTGGTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCT
TGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
CTTCCAAAAAAATTTT
Found at i:16720615 original size:26 final size:26
Alignment explanation
Indices: 16720576--16720628 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16720566 TTTGACTTAG
16720576 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
* *
16720602 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
16720628 G
1 G
16720629 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:16722138 original size:4 final size:4
Alignment explanation
Indices: 16722129--16722158 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
16722119 CCGGCGTAGT
16722129 GCCC GCCC GCCC GCCC GCCC GCCC GCCC GC
1 GCCC GCCC GCCC GCCC GCCC GCCC GCCC GC
16722159 TCGTTTCGTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.00, C:0.73, G:0.27, T:0.00
Consensus pattern (4 bp):
GCCC
Found at i:16726613 original size:26 final size:26
Alignment explanation
Indices: 16726575--16726625 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16726565 GTTGACTTAG
16726575 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
**
16726601 GCATACGGTGTTCATTCCCAGTCTA
1 GCATACGAAGTTCATTCCCAGTCTA
16726626 CGATCGGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16726983 original size:20 final size:21
Alignment explanation
Indices: 16726943--16726983 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
16726933 TGTAAACACC
*
16726943 CAATTGGGTCCAGGCCTAAAT
1 CAATTGGGTCCAGGCCCAAAT
*
16726964 CAATTGGG-CCTGGCCCAAAT
1 CAATTGGGTCCAGGCCCAAAT
16726984 GGGTATAGCC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.27, C:0.27, G:0.24, T:0.22
Consensus pattern (21 bp):
CAATTGGGTCCAGGCCCAAAT
Found at i:16727073 original size:3 final size:3
Alignment explanation
Indices: 16727056--16727100 Score: 74
Period size: 3 Copynumber: 15.0 Consensus size: 3
16727046 GTATTTGATG
16727056 TAT T-T TAT TATT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
16727101 GTATATCTTT
Statistics
Matches: 40, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
2 2 0.05
3 35 0.88
4 3 0.08
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TAT
Found at i:16727185 original size:17 final size:19
Alignment explanation
Indices: 16727146--16727188 Score: 54
Period size: 17 Copynumber: 2.3 Consensus size: 19
16727136 TTATATGTAT
*
16727146 TTTAGTTATATAGTTCTATA
1 TTTA-TTATATAGTTATATA
16727166 TTTATTATATA-TTATA-A
1 TTTATTATATAGTTATATA
16727183 TTTATT
1 TTTATT
16727189 TATTATTTCT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 7 0.32
18 4 0.18
19 7 0.32
20 4 0.18
ACGTcount: A:0.33, C:0.02, G:0.05, T:0.60
Consensus pattern (19 bp):
TTTATTATATAGTTATATA
Found at i:16728320 original size:11 final size:10
Alignment explanation
Indices: 16728304--16728379 Score: 52
Period size: 11 Copynumber: 7.7 Consensus size: 10
16728294 TTAATATTCT
16728304 TTTTATCTTTA
1 TTTT-TCTTTA
*
16728315 TTTTATTTTTA
1 TTTT-TCTTTA
*
16728326 TTTTTGTTTTA
1 TTTTT-CTTTA
*
16728337 CTTTTCTTTA
1 TTTTTCTTTA
16728347 --TTT-TTTA
1 TTTTTCTTTA
*
16728354 TTTTTATTTA
1 TTTTTCTTTA
16728364 TTTTT-TTTA
1 TTTTTCTTTA
*
16728373 TTATTCT
1 TTTTTCT
16728380 ATTTTCTTTA
Statistics
Matches: 56, Mismatches: 4, Indels: 11
0.79 0.06 0.15
Matches are distributed among these distances:
7 4 0.07
8 3 0.05
9 11 0.20
10 15 0.27
11 23 0.41
ACGTcount: A:0.14, C:0.05, G:0.01, T:0.79
Consensus pattern (10 bp):
TTTTTCTTTA
Found at i:16728324 original size:6 final size:6
Alignment explanation
Indices: 16728303--16728384 Score: 62
Period size: 6 Copynumber: 13.7 Consensus size: 6
16728293 TTTAATATTC
* * * * *
16728303 TTTTTA TCTTTA -TTTTA TTTTTA TTTTT- GTTTTA CTTTTC TTTAT-
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
*
16728348 TTTTTA TTTTTA TTTATTT TTTTTA TTATTCTA TTTT
1 TTTTTA TTTTTA TTT-TTA TTTTTA TT-TT-TA TTTT
16728385 CTTTAAATAA
Statistics
Matches: 60, Mismatches: 10, Indels: 11
0.74 0.12 0.14
Matches are distributed among these distances:
5 12 0.20
6 35 0.58
7 9 0.15
8 4 0.07
ACGTcount: A:0.15, C:0.05, G:0.01, T:0.79
Consensus pattern (6 bp):
TTTTTA
Found at i:16728325 original size:17 final size:17
Alignment explanation
Indices: 16728303--16728371 Score: 58
Period size: 17 Copynumber: 4.2 Consensus size: 17
16728293 TTTAATATTC
16728303 TTTTTATCTTTATTTTA
1 TTTTTATCTTTATTTTA
* *
16728320 TTTTTATTTTTGTTTTA
1 TTTTTATCTTTATTTTA
*
16728337 -CTTT-TCTTTATTTTTTA
1 TTTTTATCTTTA--TTTTA
16728354 TTTTTA--TTTATTTT-
1 TTTTTATCTTTATTTTA
16728368 TTTT
1 TTTT
16728372 ATTATTCTAT
Statistics
Matches: 42, Mismatches: 6, Indels: 11
0.71 0.10 0.19
Matches are distributed among these distances:
14 4 0.10
15 8 0.19
16 3 0.07
17 24 0.57
18 3 0.07
ACGTcount: A:0.13, C:0.04, G:0.01, T:0.81
Consensus pattern (17 bp):
TTTTTATCTTTATTTTA
Found at i:16728340 original size:27 final size:25
Alignment explanation
Indices: 16728303--16728384 Score: 83
Period size: 27 Copynumber: 3.0 Consensus size: 25
16728293 TTTAATATTC
16728303 TTTTTATCTTTATTTTATTTTTATTTT
1 TTTTTA-CTTT-TTTTATTTTTATTTT
16728330 TGTTTTACTTTTCTTTATTTTTTATTTT
1 T-TTTTACTTTT-TTTA-TTTTTATTTT
* *
16728358 TATTTATTTTTTTTATTATTCTATTTT
1 TTTTTACTTTTTTTATT-TT-TATTTT
16728385 CTTTAAATAA
Statistics
Matches: 48, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
25 2 0.04
26 7 0.15
27 23 0.48
28 16 0.33
ACGTcount: A:0.15, C:0.05, G:0.01, T:0.79
Consensus pattern (25 bp):
TTTTTACTTTTTTTATTTTTATTTT
Found at i:16728382 original size:17 final size:16
Alignment explanation
Indices: 16728343--16728389 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 16
16728333 TTTACTTTTC
*
16728343 TTTATTTTTTATTTTTA
1 TTTATTTTTT-TTATTA
16728360 TTTATTTTTTTTATTA
1 TTTATTTTTTTTATTA
*
16728376 TTCTATTTTCTTTA
1 TT-TATTTTTTTTA
16728390 AATAAAAATC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
16 7 0.26
17 20 0.74
ACGTcount: A:0.17, C:0.04, G:0.00, T:0.79
Consensus pattern (16 bp):
TTTATTTTTTTTATTA
Found at i:16728551 original size:58 final size:56
Alignment explanation
Indices: 16728427--16728684 Score: 390
Period size: 58 Copynumber: 4.5 Consensus size: 56
16728417 ATATTTTTAG
16728427 GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCAAAAAGGGTTTTTGA
1 GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCAAAAAGGGTTTTTGA
*
16728483 GGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTCAAAAAGGGTTTTTGA
1 GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT--AAATTTCAAAAAGGGTTTTTGA
*** *
16728541 GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCCAAAAAAAATATTTTTA
1 GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTT-CAAAAAGGGT-TTTTGA
*
16728599 GGGAAAAGTTGAAAGTATCAATTTTCCTAAAAAATAAAATTTCAAAAAAAGGGTTTTTGA
1 -GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAATTTC--AAAAAGGGTTTTTGA
16728659 GGAAAAGTTGAAAGTATCAATTTTCC
1 GGAAAAGTTGAAAGTATCAATTTTCC
16728685 CTACACAAGA
Statistics
Matches: 183, Mismatches: 11, Indels: 13
0.88 0.05 0.06
Matches are distributed among these distances:
56 39 0.21
57 7 0.04
58 60 0.33
59 60 0.33
60 11 0.06
61 6 0.03
ACGTcount: A:0.44, C:0.08, G:0.15, T:0.33
Consensus pattern (56 bp):
GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCAAAAAGGGTTTTTGA
Found at i:16728618 original size:59 final size:58
Alignment explanation
Indices: 16728392--16728684 Score: 371
Period size: 59 Copynumber: 5.0 Consensus size: 58
16728382 TTTCTTTAAA
*
16728392 TAAAAATCAAAATTTCCAAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAAT-AAAATTT-C-AAAAAAAGT-TTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
** *
16728454 TAAAAAT-AAATTTCAAAAAGGGTTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATAAAATTTCAAAAAAAGTTTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
* ** *
16728510 TGAAAATCAAAATTTCAAAAAGGGTTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAAT-AAAATTTCAAAAAAAGTTTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
*
16728568 TAAAAAT-AAATTTCCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATAAAATTT-CAAAAAAAGT-TTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
* *
16728627 AAAAAATAAAATTTCAAAAAAAGGGTTTTT-GAGGAAAAGTTGAAAGTATCAATTTTCC
1 TAAAAATAAAATTTCAAAAAAA-GTTTTTTAG-GGAAAAGTTGAAAGTATCAATTTTCC
16728685 CTACACAAGA
Statistics
Matches: 210, Mismatches: 13, Indels: 19
0.87 0.05 0.08
Matches are distributed among these distances:
56 39 0.19
57 12 0.06
58 67 0.32
59 73 0.35
60 12 0.06
62 7 0.03
ACGTcount: A:0.46, C:0.08, G:0.14, T:0.32
Consensus pattern (58 bp):
TAAAAATAAAATTTCAAAAAAAGTTTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:16732616 original size:11 final size:11
Alignment explanation
Indices: 16732600--16732638 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
16732590 AGAAGATGAT
16732600 GAAAAAAAAAA
1 GAAAAAAAAAA
16732611 G-AAAAAAAAA
1 GAAAAAAAAAA
* *
16732621 GAAAGAAAGAA
1 GAAAAAAAAAA
16732632 GAAAAAA
1 GAAAAAA
16732639 TGAAAAAAGA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
10 10 0.42
11 14 0.58
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (11 bp):
GAAAAAAAAAA
Found at i:16732617 original size:10 final size:10
Alignment explanation
Indices: 16732602--16732638 Score: 56
Period size: 10 Copynumber: 3.6 Consensus size: 10
16732592 AAGATGATGA
16732602 AAAAAAAAAG
1 AAAAAAAAAG
16732612 AAAAAAAAAG
1 AAAAAAAAAG
*
16732622 AAAGAAAGAAG
1 AAA-AAAAAAG
16732633 AAAAAA
1 AAAAAA
16732639 TGAAAAAAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
10 16 0.64
11 9 0.36
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:16732631 original size:18 final size:18
Alignment explanation
Indices: 16732601--16732648 Score: 64
Period size: 18 Copynumber: 2.7 Consensus size: 18
16732591 GAAGATGATG
16732601 AAAA-AAAAAAGAA-AAA
1 AAAAGAAAAAAGAAGAAA
16732617 AAAAGAAAGAAAGAAGAAA
1 AAAAGAAA-AAAGAAGAAA
*
16732636 AAATGAAAAAAGA
1 AAAAGAAAAAAGA
16732649 GATTCAAATT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
16 4 0.14
17 3 0.11
18 11 0.39
19 10 0.36
ACGTcount: A:0.83, C:0.00, G:0.15, T:0.02
Consensus pattern (18 bp):
AAAAGAAAAAAGAAGAAA
Found at i:16733938 original size:42 final size:42
Alignment explanation
Indices: 16733862--16734242 Score: 516
Period size: 41 Copynumber: 9.1 Consensus size: 42
16733852 ATGATTGTCA
16733862 AGGAGCAATTTACTTTC-CAAAGTTTCGT--TGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCTCAAAG--TCGTGGTGCCTCTGTTTAG
*
16733903 AGGAGCAATTTACTTTCTCAAAGTTGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCTCAAAGTCGTGGTGCCTCTGTTTAG
*
16733945 AGGAGCAATTTACTTT-TCCAAAGTTCCAT--TGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCT-CAAAG-T-CGTGGTGCCTCTGTTTAG
16733987 AGGAGCAATTTACTTTCTCAAAGTCGTGGTGCCTCTGTTTAGAAG
1 AGGAGCAATTTACTTTCTCAAAGTCGTGGTGCCTCTGTTT---AG
*
16734032 AGGAGCAATTTACTTT-TCCAAAGTTGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCT-CAAAGTCGTGGTGCCTCTGTTTAG
*
16734074 AGGAGCAATTTACTTTC-AAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCTCAAAGTCGTGGTGCCTCTGTTTAG
*
16734115 AGGAGCAATTTATTTTC-CAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCTCAAAGTCGTGGTGCCTCTGTTTAG
*
16734156 AGGAGCAATTTAC-TT-TCAAAGTCGTGGTGCCTCTGTTTAA
1 AGGAGCAATTTACTTTCTCAAAGTCGTGGTGCCTCTGTTTAG
* * *
16734196 AGGAGCAATTTATTTTC-CAAAGTCGTTGAGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCTCAAAGTCGTGGTGCCTCTGTTTAG
16734237 AGGAGC
1 AGGAGC
16734243 TTTGGTCAAA
Statistics
Matches: 308, Mismatches: 15, Indels: 34
0.86 0.04 0.10
Matches are distributed among these distances:
40 42 0.14
41 121 0.39
42 102 0.33
43 2 0.01
44 2 0.01
45 39 0.13
ACGTcount: A:0.23, C:0.18, G:0.23, T:0.36
Consensus pattern (42 bp):
AGGAGCAATTTACTTTCTCAAAGTCGTGGTGCCTCTGTTTAG
Found at i:16733977 original size:84 final size:83
Alignment explanation
Indices: 16733862--16734242 Score: 564
Period size: 81 Copynumber: 4.6 Consensus size: 83
16733852 ATGATTGTCA
16733862 AGGAGCAATTTAC-TTTCCAAAGTTTCGTTGCCTCTGTTTAGAGGAGCAATTTACTTTCTCAAAG
1 AGGAGCAATTTACTTTTCCAAAG-TTCGTTGCCTCTGTTTAGAGGAGCAATTTACTTTCTCAAAG
*
16733926 TTGTGGTGCCTCTGTTTAG
65 TCGTGGTGCCTCTGTTTAG
*
16733945 AGGAGCAATTTACTTTTCCAAAGTTCCATTGCCTCTGTTTAGAGGAGCAATTTACTTTCTCAAAG
1 AGGAGCAATTTACTTTTCCAAAGTT-CGTTGCCTCTGTTTAGAGGAGCAATTTACTTTCTCAAAG
16734010 TCGTGGTGCCTCTGTTTAGAAG
65 TCGTGGTGCCTCTGTTT---AG
*
16734032 AGGAGCAATTTACTTTTCCAAAGTT-GTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTC-AAAA
1 AGGAGCAATTTACTTTTCCAAAGTTCGT--TGCCTCTGTTTAGAGGAGCAATTTACTTTCTCAAA
16734095 GTCGTGGTGCCTCTGTTTAG
64 GTCGTGGTGCCTCTGTTTAG
16734115 AGGAGCAATTTA-TTTTCCAAAG-TCGTGGTGCCTCTGTTTAGAGGAGCAATTTAC-TT-TCAAA
1 AGGAGCAATTTACTTTTCCAAAGTTCGT--TGCCTCTGTTTAGAGGAGCAATTTACTTTCTCAAA
*
16734176 GTCGTGGTGCCTCTGTTTAA
64 GTCGTGGTGCCTCTGTTTAG
16734196 AGGAGCAATTTA-TTTTCCAAAG-TCGTTGAGCCTCTGTTTAGAGGAGC
1 AGGAGCAATTTACTTTTCCAAAGTTCGTT--GCCTCTGTTTAGAGGAGC
16734243 TTTGGTCAAA
Statistics
Matches: 281, Mismatches: 6, Indels: 24
0.90 0.02 0.08
Matches are distributed among these distances:
79 1 0.00
81 69 0.25
82 40 0.14
83 29 0.10
84 63 0.22
85 1 0.00
86 21 0.07
87 57 0.20
ACGTcount: A:0.23, C:0.18, G:0.23, T:0.36
Consensus pattern (83 bp):
AGGAGCAATTTACTTTTCCAAAGTTCGTTGCCTCTGTTTAGAGGAGCAATTTACTTTCTCAAAGT
CGTGGTGCCTCTGTTTAG
Found at i:16734266 original size:12 final size:12
Alignment explanation
Indices: 16734249--16734313 Score: 64
Period size: 12 Copynumber: 5.5 Consensus size: 12
16734239 GAGCTTTGGT
16734249 CAAAAACAAAAA
1 CAAAAACAAAAA
16734261 CAAAAA-AAACAA
1 CAAAAACAAA-AA
*
16734273 AAAAAACAACAAA
1 CAAAAACAA-AAA
* *
16734286 AAAAAACACAAA
1 CAAAAACAAAAA
16734298 -AAAAAC-AAAA
1 CAAAAACAAAAA
16734308 CAAAAA
1 CAAAAA
16734314 ATGACAATGC
Statistics
Matches: 46, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
10 3 0.07
11 14 0.30
12 16 0.35
13 12 0.26
14 1 0.02
ACGTcount: A:0.85, C:0.15, G:0.00, T:0.00
Consensus pattern (12 bp):
CAAAAACAAAAA
Done.