Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 90 of 195
Found at i:16734270 original size:9 final size:9
Alignment explanation
Indices: 16734256--16734314 Score: 68
Period size: 9 Copynumber: 6.3 Consensus size: 9
16734246 GGTCAAAAAC
16734256 AAAAACAAA
1 AAAAACAAA
16734265 AAAAACAAA
1 AAAAACAAA
16734274 AAAAACAACA
1 AAAAACAA-A
16734284 AAAAA-AAA
1 AAAAACAAA
16734292 CACAAAA-AAA
1 -A-AAAACAAA
16734302 ACAAAACAAA
1 A-AAAACAAA
16734312 AAA
1 AAA
16734315 TGACAATGCT
Statistics
Matches: 46, Mismatches: 0, Indels: 8
0.85 0.00 0.15
Matches are distributed among these distances:
8 1 0.02
9 28 0.61
10 17 0.37
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (9 bp):
AAAAACAAA
Found at i:16734275 original size:21 final size:20
Alignment explanation
Indices: 16734249--16734312 Score: 83
Period size: 21 Copynumber: 3.0 Consensus size: 20
16734239 GAGCTTTGGT
16734249 CAAAAACAAAAACAAAAAAAA
1 CAAAAA-AAAAACAAAAAAAA
16734270 CAAAAAAAACAACAAAAAAAAA
1 CAAAAAAAA-AAC-AAAAAAAA
*
16734292 CACAAAAAAAACAAAACAAAA
1 CAAAAAAAAAACAAAA-AAAA
16734313 AATGACAATG
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
20 7 0.18
21 16 0.41
22 16 0.41
ACGTcount: A:0.84, C:0.16, G:0.00, T:0.00
Consensus pattern (20 bp):
CAAAAAAAAAACAAAAAAAA
Found at i:16734279 original size:24 final size:24
Alignment explanation
Indices: 16734250--16734314 Score: 98
Period size: 24 Copynumber: 2.8 Consensus size: 24
16734240 AGCTTTGGTC
16734250 AAAAACAAAAACAAAAAAAACAAA
1 AAAAACAAAAACAAAAAAAACAAA
*
16734274 AAAAACAACAAA-AAAAAACACAAA
1 AAAAACAA-AAACAAAAAAAACAAA
16734298 AAAAAC-AAAACAAAAAA
1 AAAAACAAAAACAAAAAA
16734315 TGACAATGCT
Statistics
Matches: 38, Mismatches: 1, Indels: 5
0.86 0.02 0.11
Matches are distributed among these distances:
22 3 0.08
23 7 0.18
24 25 0.66
25 3 0.08
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (24 bp):
AAAAACAAAAACAAAAAAAACAAA
Found at i:16734297 original size:33 final size:34
Alignment explanation
Indices: 16734249--16734312 Score: 105
Period size: 33 Copynumber: 1.9 Consensus size: 34
16734239 GAGCTTTGGT
16734249 CAAAAACAAAAACAAAAAAAACAAAA-AAAACAA
1 CAAAAACAAAAACAAAAAAAACAAAACAAAACAA
16734282 CAAAAA-AAAACACAAAAAAAACAAAACAAAA
1 CAAAAACAAAA-ACAAAAAAAACAAAACAAAA
16734313 AATGACAATG
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
32 4 0.14
33 21 0.72
34 4 0.14
ACGTcount: A:0.84, C:0.16, G:0.00, T:0.00
Consensus pattern (34 bp):
CAAAAACAAAAACAAAAAAAACAAAACAAAACAA
Found at i:16734314 original size:12 final size:11
Alignment explanation
Indices: 16734249--16734314 Score: 75
Period size: 11 Copynumber: 6.0 Consensus size: 11
16734239 GAGCTTTGGT
16734249 CAAAAACAAAAA
1 CAAAAA-AAAAA
16734261 C--AAAAAAAA
1 CAAAAAAAAAA
16734270 CAAAAAAAACAA
1 CAAAAAAAA-AA
16734282 C-AAAAAAAAA
1 CAAAAAAAAAA
*
16734292 CACAAAAAAAA
1 CAAAAAAAAAA
16734303 CAAAACAAAAAA
1 CAAAA-AAAAAA
16734315 TGACAATGCT
Statistics
Matches: 47, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
9 6 0.13
10 6 0.13
11 25 0.53
12 10 0.21
ACGTcount: A:0.85, C:0.15, G:0.00, T:0.00
Consensus pattern (11 bp):
CAAAAAAAAAA
Found at i:16734320 original size:15 final size:14
Alignment explanation
Indices: 16734251--16734314 Score: 73
Period size: 14 Copynumber: 4.8 Consensus size: 14
16734241 GCTTTGGTCA
*
16734251 AAAACAAAAACAAAA
1 AAAACAAAAA-AAAC
16734266 AAAACAAAAAAAAC
1 AAAACAAAAAAAAC
16734280 --AAC-AAAAAAA-
1 AAAACAAAAAAAAC
*
16734290 AACACAAAAAAAAC
1 AAAACAAAAAAAAC
16734304 AAAACAAAAAA
1 AAAACAAAAAA
16734315 TGACAATGCT
Statistics
Matches: 42, Mismatches: 3, Indels: 9
0.78 0.06 0.17
Matches are distributed among these distances:
11 7 0.17
12 5 0.12
13 7 0.17
14 13 0.31
15 10 0.24
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (14 bp):
AAAACAAAAAAAAC
Found at i:16734519 original size:17 final size:17
Alignment explanation
Indices: 16734477--16734519 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
16734467 ATTTTTTACC
**
16734477 TTGTATTTTTTTTTCTT
1 TTGTATTTTTCCTTCTT
* *
16734494 TTTTCTTTTTCCTTCTT
1 TTGTATTTTTCCTTCTT
16734511 TTGTATTTT
1 TTGTATTTT
16734520 ATGTATTTTA
Statistics
Matches: 20, Mismatches: 6, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.05, C:0.12, G:0.05, T:0.79
Consensus pattern (17 bp):
TTGTATTTTTCCTTCTT
Found at i:16734621 original size:20 final size:18
Alignment explanation
Indices: 16734587--16734630 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 18
16734577 TATTTATATG
16734587 TAATTTATTTATATAGTTA
1 TAATTTATTTATATA-TTA
16734606 TATATTTA-TTATTATATTA
1 TA-ATTTATTTA-TATATTA
16734625 TAATTT
1 TAATTT
16734631 TTTTTTTGGT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
18 4 0.17
19 10 0.43
20 9 0.39
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (18 bp):
TAATTTATTTATATATTA
Found at i:16734622 original size:14 final size:16
Alignment explanation
Indices: 16734572--16734622 Score: 56
Period size: 15 Copynumber: 3.4 Consensus size: 16
16734562 TTATTTTTTC
16734572 GTTA-ATATTTATAT-
1 GTTATATATTTATATA
* *
16734586 GTAATTTATTTATATA
1 GTTATATATTTATATA
16734602 GTTATATATTTAT-TA
1 GTTATATATTTATATA
16734617 -TTATAT
1 GTTATAT
16734623 TATAATTTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
14 9 0.29
15 11 0.35
16 11 0.35
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.59
Consensus pattern (16 bp):
GTTATATATTTATATA
Found at i:16734711 original size:18 final size:18
Alignment explanation
Indices: 16734690--16734734 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
16734680 TGTTAATTTT
*
16734690 ATTTTATTCATTTATCTG
1 ATTTTATTCATTTATCCG
* *
16734708 ATTTTTTTTATTTATCCG
1 ATTTTATTCATTTATCCG
16734726 ATTATTATT
1 ATT-TTATT
16734735 TTTTTTTTTC
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
18 18 0.82
19 4 0.18
ACGTcount: A:0.22, C:0.09, G:0.04, T:0.64
Consensus pattern (18 bp):
ATTTTATTCATTTATCCG
Found at i:16734715 original size:26 final size:25
Alignment explanation
Indices: 16734661--16734720 Score: 61
Period size: 24 Copynumber: 2.4 Consensus size: 25
16734651 GATTTATTTT
16734661 ATTTTATTTTTTAATTATCTG-TTA
1 ATTTTATTTTTTAATTATCTGTTTA
*
16734685 ATTTTATTTTATTCATTTATCTGATTT-
1 ATTTTATTTT-TT-AATTATCTG-TTTA
*
16734712 TTTTTATTT
1 ATTTTATTT
16734721 ATCCGATTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
24 10 0.33
25 2 0.07
26 8 0.27
27 8 0.27
28 2 0.07
ACGTcount: A:0.22, C:0.05, G:0.03, T:0.70
Consensus pattern (25 bp):
ATTTTATTTTTTAATTATCTGTTTA
Found at i:16735528 original size:5 final size:5
Alignment explanation
Indices: 16735520--16735666 Score: 65
Period size: 5 Copynumber: 29.0 Consensus size: 5
16735510 TTTTTTCAGA
* * **
16735520 ATTTT A-TTT A-TTT ATTTT GTTTT A-TTT ATTTT ATTTT ATTTA ATTAG
1 ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT
** * *
16735567 ATTAG A-TTT ATTTA ATTATTT ATTTT ATTCTT ATTTT -TTTT GTTTT
1 ATTTT ATTTT ATTTT A-T-TTT ATTTT ATT-TT ATTTT ATTTT ATTTT
* * *
16735613 ACTTTT CTTTT -TTTT ATTCTTT ATTGATT -TTTC ACTTTT ATTTT ATTCT
1 A-TTTT ATTTT ATTTT A-T-TTT ATT--TT ATTTT A-TTTT ATTTT ATTTT
16735662 ATTTT
1 ATTTT
16735667 CTTTAAAATG
Statistics
Matches: 112, Mismatches: 15, Indels: 30
0.71 0.10 0.19
Matches are distributed among these distances:
4 23 0.21
5 61 0.54
6 19 0.17
7 9 0.08
ACGTcount: A:0.20, C:0.05, G:0.03, T:0.72
Consensus pattern (5 bp):
ATTTT
Found at i:16735543 original size:14 final size:14
Alignment explanation
Indices: 16735520--16735613 Score: 77
Period size: 14 Copynumber: 6.8 Consensus size: 14
16735510 TTTTTTCAGA
16735520 ATTTTA-TTTATTT
1 ATTTTATTTTATTT
*
16735533 ATTTTGTTTTATTT
1 ATTTTATTTTATTT
16735547 ATTTTATTTTATTT
1 ATTTTATTTTATTT
** **
16735561 AATTAGATTAGATTT
1 -ATTTTATTTTATTT
*
16735576 A-TTTA-ATTATTT
1 ATTTTATTTTATTT
16735588 ATTTTATTCTTATTT
1 ATTTTATT-TTATTT
* *
16735603 TTTTTGTTTTA
1 ATTTTATTTTA
16735614 CTTTTCTTTT
Statistics
Matches: 62, Mismatches: 14, Indels: 9
0.73 0.16 0.11
Matches are distributed among these distances:
12 5 0.08
13 11 0.18
14 24 0.39
15 22 0.35
ACGTcount: A:0.23, C:0.01, G:0.04, T:0.71
Consensus pattern (14 bp):
ATTTTATTTTATTT
Found at i:16735544 original size:18 final size:19
Alignment explanation
Indices: 16735521--16735556 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
16735511 TTTTTCAGAA
16735521 TTTTATTTA-TTTATTTTG
1 TTTTATTTATTTTATTTTG
16735539 TTTTATTTATTTTATTTT
1 TTTTATTTATTTTATTTT
16735557 ATTTAATTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.17, C:0.00, G:0.03, T:0.81
Consensus pattern (19 bp):
TTTTATTTATTTTATTTTG
Found at i:16735630 original size:29 final size:32
Alignment explanation
Indices: 16735585--16735666 Score: 89
Period size: 33 Copynumber: 2.6 Consensus size: 32
16735575 TATTTAATTA
*
16735585 TTTATTTTATTCTTATTTTTTTTG-TTTT-ACT
1 TTTATTTTATT-TTATTTTTATTGATTTTCACT
*
16735616 TTTCTTTT-TTTTATTCTTTATTGATTTTTCACT
1 TTTATTTTATTTTATT-TTTATTGA-TTTTCACT
*
16735649 TTTATTTTATTCTATTTT
1 TTTATTTTATTTTATTTT
16735667 CTTTAAAATG
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
29 5 0.12
30 8 0.19
31 7 0.17
32 4 0.10
33 12 0.29
34 6 0.14
ACGTcount: A:0.13, C:0.09, G:0.02, T:0.76
Consensus pattern (32 bp):
TTTATTTTATTTTATTTTTATTGATTTTCACT
Found at i:16738923 original size:903 final size:900
Alignment explanation
Indices: 16736794--16745603 Score: 10746
Period size: 902 Copynumber: 9.8 Consensus size: 900
16736784 NNNNNNNNNN
*
16736794 AACTCACACCCCCTTAAAGAGCATTTGAGAATTTTA-AGGTTTAACTGGCCCAGTAGCGCTATTA
1 AACTCACACCCCCTTAAAGAGCATTTGAG-ATTTTACAGGTTT-GCT-G-CCAGTAGC-C-ATT-
* *
16736858 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAATCTTGTACACTTTTGAGTTTT
59 AAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCAC-AAAATCTTGTACAC-TTCGAG-TTT
* * *
16736923 TTAAGCTAAATTTTTTTTTCCAACTGCCAACCAAAAAATACAACGG-TCCATGTCTACCAAGTTT
121 TT-AGCTGAATTTTTTTGTGC-A-TGCCAA-C-AAAAATACAA-GGAT-CATGTCTACCAAGTTT
* * * * *
16736987 GGGTCCAAAACTCCTTCGCGAAATAAATTTT-AAAATTCTTCCGAACACGCAAAAAAGTTTTGAG
179 GGGGCCAAAACTCCTTC-CGAAA-AAATTTTAAAAAATC--CTGAAC-CGC-AAAAAGTTTTAAA
* * *
16737051 AATCGTGAAAAATAGAAAACGAGTTCGTCCTACCATGAAACTTCACGCGAAGGCTTAAGGGA-CA
238 AATCGTGAAAAATAGAAAACGAG-TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* *
16737115 GTTGTAATGAATTTACAAGCCATAAAAATAGCATTGGCATGTAGAAATATGAAGATGTGCCTAAA
302 -TTGT-ATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAA
* * * * * *
16737180 CCCA-CTACCACCCTATCGATCCATGACTTGCGCATGCCGTCTCTTCAGGCTGGCGTACTGCCCG
365 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC-TCTGGCCGGCGTAGTGCCCG
* * *
16737244 -C-CCGTCCGCCCCGCCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCCAAA
429 CCGCCCTCCG-CCCG-CTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
** ** * * *
16737307 AT-AGGACTGGATTCAGGGTGTG-GGTAGCAGGATGGGCAGC-TGCAGAGGGGGACCC-GCTCGA
492 ATCA-GACCAGATAGAGGGT-TGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGC-CGA
* * * * * *
16737368 TCCCCCCGGTTTGCGAATCACCGCCCCTCTGGCCGGCTGAGGCGTCCGTACGCTTGTTTTTGTGG
554 T--CCCCGGCTTGCGCATC-CCGCCCCTCTGGCCGGCTGA-GCGCCCGCACGCTCG-TTTCGTGG
* *
16737433 GTTTGACTTGAGGCATACGGAGGTTCATTCCCAGTCTAAGCATGGCGGAGTTCATTCCCAATCTA
614 G-TTGACTT-AGGCATACGGA-GTTCATTCCCAGTCTAAGCAT-ACGGAGTTCATTCCCAGTCTA
* * * *
16737498 ATATCAGAACAAGACTAAGGGTTACGGCAAGCACATGCTGGGCTCGAGCATGATGCTGGATGGCC
675 AGATCAG-ACCAGACTGAGGGTTACGGC-AGCACATGCTGGGCTCGGGCATG-TGCTGG-T-GCC
* * * * *
16737563 ACCATTGTTTATTGTC-GGGGCACCATTGCCGGAAGCATCAATCGGAGAACCTGA-CGCAGTGGC
735 -GCATT-TTTCTT-TCTGGGGCACCATCGCCGG-AGCATC-GTCGGAGAACCTGACCG-A-CGGC
* * *
16737626 ATTGGGGTTCCGACGATCGATGGGAG-CCGAGGGGGGTGTC-CACACATGATGTACGATTGGTTG
793 ATTGGGGTTCCGACGATCG--GGG-GTCCG-GGGGGGTG-CGCGCACATGATGTGCGA-TGGGTG
* *
16737689 CTGGTACCTGGCTCTTATATTGGCCCCCTAT-CCTCATCAAACCTCGAG
852 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
*
16737737 AACTCCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTG
1 AACT-CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* **
16737802 TTCGAAGCGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
65 TTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* *
16737867 TTTTTTT-TCCATGCCAATAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTT
130 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * * * * * *
16737931 CCAAAAAAATTTTAAAAAATCCCGAACTGTAAAATGTTTTGAAAATCGTGAAATATAGAAAACGA
195 CCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGA
* *
16737996 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATGA
260 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* ** * *
16738061 AAATGGCATTCGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCAGCCTATCGATCCGC
325 AAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* *
16738126 GGCTTGAGCATCCCGTCTCTTTGGCCGGCGTAGTGCCCGCCGGCCCATCCGCCCGCTCGTTTCAT
390 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC-GCCC-TCCGCCCGCTCGTTTCAT
* * **
16738191 CGGTTGACTTAGGCATA-GGAGTTCATCCCCAGTCTAAGATTGGACCAGATAGAGGGTTGCGGCA
453 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATAGAGGGTTGCGGCA
** * * *
16738255 GCAAAATCGGCAGCACGCAGAGGGGGACCTGGCCGATCCCCGACTTGCACATCCCGCCCCTCTGG
518 GCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* *
16738320 CCGGCTAAGCGCCCGCACGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
583 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * * **
16738385 AAGCATGCCGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCACATGCTG
648 AAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGCAGCACATGCTG
* *
16738450 GGCTCGGGCATGTGCTGGCGCCGCATTTTTCTTTACTGGGGCACCATCACCGGAGCATCGTCGGA
713 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTT-CTGGGGCACCATCGCCGGAGCATCGTCGGA
*
16738515 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGTCCTGGGGGGGTGCGCACACATGATG
777 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGTCC-GGGGGGGTGCGCGCACATGATG
* *
16738580 TGCGATGGGTG-TGGTACTTGGCCCATTATATTGGCCCCCTATCCCTCATGAAACCTCGTG
841 TGCGATGGGTGCTGGTACTTGGCCC-TTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* *
16738640 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCCGCCAGTAGCTATTAAAGTGT
1 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
16738705 TTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
66 TTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
*
16738770 TTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTT
131 TTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * *
16738835 TGAAAAAATTTTAAAAAATCATGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAG
196 CGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAG
* * * * *
16738900 TCGTATTGCCATGAAAGTTCACGTGGAGGCTTAAAGGACCATTGTATGAATTTACAAGGCATAAA
261 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
*
16738965 AATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTACG
326 AATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * *
16739030 GCTTGCGCATCCCGTCTCTCTGGACAGCGTAGTGCCCGCCCGCCCGCCCACCCGCCCACTCGTTT
391 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCG-CCGCCC-TCCGCCCGCTCGTTT
* * * * *
16739095 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGCCTAATATCAGACCAAACT-GAGGGTTGA
450 CATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-TAGAGGGTTGC
* * * * * *
16739159 GGCAGCAAGATCGGCAGCATGCAGA-GGGGTCCCAGCGGATCCCTGGCTTGCGCATCCCGCCCCT
514 GGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCT
** * * * *
16739223 CTGGCCGTATGAGCGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCTA
579 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* * * * * * * *
16739288 GTCTAACCATACGG-GTTGATTGCCAGTCTAAGATCGGATCAGACCGAGGGATATGGCAGCACAT
644 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGCAGCACAT
* * * *
16739352 GCTGGGCTCAGGCATGTGCTGGAGCCGCATTTTTC-TTCGTCGGGGCACCATTGTCGGAGCATCG
709 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTC-T-GGGGCACCATCGCCGGAGCATCG
* * * * *
16739416 CCGGAGAACCTGACCGGCGGCGTTGGGGTTCCGTCGATCGGGGGGGT-GGGGGGAGGTGTC-CGC
772 TCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC--GGGGGTCCGGGGG-GGTG-CGCGC
16739479 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
833 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
16739544 GAG
898 GAG
*
16739547 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCCGCCAGTAGCCATTAAAGTGT
1 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* *
16739612 TTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTCGAGTTTTTAGTTGAAT
66 TTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * * * *
16739677 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGCCTATCAAGTTTGGGGCCAAAATTCCTTG
131 TTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * *** * *
16739742 CGAACAGATTTTAAAAAATCCTGAATTTCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAG
196 CGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAG
* *
16739807 TCGTCTTGCCAAGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
261 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* *
16739872 AATGGCATTGGCACGTAGAAATATGAAGATGTGACTAAACCCACCTACCACCCTATCGATCCATG
326 AATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
** * * * * *
16739937 GCTTGCGCATCGTGTCTCTCTAGCCGGCATAGTGCCCGCC-CGC-CCGACCGCTCGTTTCATCGA
391 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCCTCCGCCCGCTCGTTTCATCGG
* * * * *
16740000 TTGGCTCAGGCATACAGAGTTTATTCCCAGTATAAGATCAGACCAGATAGAGGGTTGCGGTAGCA
456 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATAGAGGGTTGCGGCAGCA
** * * * * * * ** * *
16740065 GGATCGATAGTATGTAGAGGGAGACCCGACTGATCCCCGGCTTATGCATCCCACCCGTCTGGCCG
521 GGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * * *
16740130 GCTGAGCTCCCGCACGCTCGTTTTGTGGGTTAACTTAGGCATACGGAGTTCATTCCTAGTCTCAG
586 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * **
16740195 TATATGGAGTTCACTCCCAGAGTAAGATCAGACCAGA-TCGAGGGTTACGGCAGCACAT-CTTGG
651 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTACGGCAGCACATGC-TGG
* * * *
16740258 GCTCGGGCATGTACTGGTGCCACA-TTTTCTTTGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
714 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTCT-GGGGCACCATCGCCGGAGCATCGTCGGAG
* * * * * * *
16740322 AACCTGACCGGCAGCATTGAGGTTCTGACGATCGGGGGGCCGGGGGGTGTGTGCGCACATGATGC
778 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGTCCGGGGGG-GTGCGCGCACATGATGT
* *
16740387 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCATCATCAAACCTCGAG
842 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
*
16740446 AACTCACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
1 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * *
16740511 CTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAAT
66 TTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* ** * *
16740576 TTTTTTGTTCATATCAACAAAAATACAAGTATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
131 TTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * *
16740641 TGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAG
196 CGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAG
* *
16740706 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGCATGAATTTACAAGCCATAAA
261 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * *
16740771 AATGCCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
326 AATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * *
16740836 GCTTACGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-CCG-CCT--GCCCGCTTGGTTCGTCGG
391 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCCTCCGCCCGCTCGTTTCATCGG
* * * ** * *
16740895 TTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAAACTAGACCGAGGGTTGTGGTAGCA
456 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATAGAGGGTTGCGGCAGCA
* * * * *
16740960 GGATCAGCAGCACACAGAGGGGGACCCTGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCG
521 GGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * *
16741025 GCTGAGCACCCGTATGCTCGTTTCGT-GG--G--TTA-GCTTA-GG-G---------A---T-A-
586 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * *
16741068 C--A--GAGTTCATTCCCAGTCTAGGATCAGACCAGACCGAGGGTTACGGTAGCACATACTGGGC
651 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGCAGCACATGCTGGGC
* * * *
16741129 ACGGGCATGTGCTGGTGCCACATTTTTC-TTCGTCGGGGCACCATCGCCGGAGCATCGCCAGAGA
716 TCGGGCATGTGCTGGTGCCGCATTTTTCTTTC-T-GGGGCACCATCGCCGGAGCATCGTCGGAGA
* * *
16741193 ACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGGT-CGGGGGGGTGTGTGCACATGATGT
779 ACCTGACCGACGGCATTGGGGTTCCGACGATC--GGGGGTCCGGGGGGGTGCGCGCACATGATGT
* * *
16741257 GCGATGGGTGCTGGTACTTGGCCCTTTTATTGGCCCCCTGTCCCTCATCAAACCTTGAG
842 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
16741316 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
1 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * *
16741381 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTATTAGTTGAAT
66 TTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * * * *
16741446 TTTTTTGTGCATGCCAAAAAAAATACAGGGATCATGTATACCAAGTTTGGGGCAAAAAATCCTTC
131 TTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* *
16741511 CGAAAAAATTTTAAAAAAT-CTCAAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGA
196 CGAAAAAATTTTAAAAAATCCT-GAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGA
* * * * *
16741575 GTCGTCATGCCATGAAAGTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTGCAAGCCAAAA
260 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * * *
16741640 AAATGGCATTGGCATGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCGAT
325 AAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * *
16741705 GGCTTGCGCATCCCGTCTCTCTGGTCGGCTTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGT
390 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CCGCCC-TCCGCCCGCTCGTTTCAT
* * * * * *
16741770 CGGTTGGCTTAGGCATACGAAGTTCATTCCCAGCCTAAGATCAGACCAAATTGAGGGTTGAGGTA
453 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATAGAGGGTTGCGGCA
* * *
16741835 GCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGTATCCCGCCCTTCTGG
518 GCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * * *
16741900 CCGGATGAGCACCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTC-GTC
583 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-CAGTC
* * * * * *
16741964 TAAGCATACGGAGTTCATTACCAGTCTAAGATCGGATCAGACCGAGGGTTATGGCAGCACATACT
647 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGCAGCACATGCT
* * * * *
16742029 GGGCTCGGGCATGTGCTGGAGCCGCATTTTTCTTCACCGGGTCACCATCGTCGGAGCATCGTCGG
712 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT-TCTGGGGCACCATCGCCGGAGCATCGTCGG
* * * ** *
16742094 AGAACCTGATCGGCGGCATTGGGGTTCCGTCGATCGGGGGGGTGGGGGGGAGGTGTC-CACACAT
776 AGAACCTGACCGACGGCATTGGGGTTCCGACGATC--GGGGGTCCGGGGG-GGTG-CGCGCACAT
*
16742158 GATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
837 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* *
16742222 AACTCACATCCCCTTAAAGAGCATTT-AGGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTG
1 AACTCACACCCCCTTAAAGAGCATTTGA-GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
*
16742286 TTTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
65 TTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * * * *
16742351 TTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCATGTTTCGGGCCAAAACTCTTT
130 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * *
16742416 TCG-AAAAATTGTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
195 CCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGA
* * * * *
16742480 GTTGTCTTGCCTTGAAACTTCACGTGAAGGCTTAAGGAAACATTGTATGAATTTACAAGTCATAA
260 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* *
16742545 AAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCAT
325 AAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * ** * *
16742610 GGCTTGCGCATCCCGTCTGTCTGACCGGTGTAGTGCCCG-C-CCTTCCGCTAGCTCGTTTCCTCT
390 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCCTCCGCCCGCTCGTTTCATCG
* * * *
16742673 GTTGGCTCAGGCATACGGAGTTCATTCCCCGTCTAAGATCAGACCAGACT-GAGGGTTACGGTAG
455 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-TAGAGGGTTGCGGCAG
* * * * ** *
16742737 CAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCTGGCCTGCGCATCCTACCCCTCAGGC
519 CAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * *
16742802 CGACTGAGCGCCAGCACGCTTGTTTCGT--G-TG---T-----T---GA---C-TT--C-G----
584 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * *
16742842 -GCATACGCAGTTCATTCCCAGTCTAAGATCAGACCAGAATGAGGGTTGCAGTAGCACATGCTGG
649 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGCAGCACATGCTGG
* *
16742906 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTTGTCGGGGCACCAT--------CA-C--CGGAG
714 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTCT-GGGGCACCATCGCCGGAGCATCGTCGGAG
* * * * *
16742960 AACCTGACCGACGGCATTGGGGTTCCGGCAATCGGGGGTGCTGGGGGAGTGTGCGCACATGATGT
778 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGT-CCGGGGGGGTGCGCGCACATGATGT
* *
16743025 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAGCTCAAG
842 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
*
16743084 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGT
1 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * *
16743149 TTGAAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCCAGTTTTTAGCTGAAT
66 TTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-
* * * *
16743214 TTTTTTTTTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTT-TGACAAAAACTCCTT
130 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTT
* ** * * *
16743278 CCGAAAAAATTTTAAAAAAT-CTCGAACCGTAAAAAGTTTCGAAAATCATTAGAAATA-AAAACG
195 CCGAAAAAATTTTAAAAAATCCT-GAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACG
* *
16743341 AGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGTGACCATTGTATGAATTTACAAGCCATA
259 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* **
16743406 AAAATGGCATTGGCACGTAGAAATATGAAGATGTGCATAAACCCACCTACCACCCTATTAATCCA
324 AAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * * * *
16743471 CGGCTTACGCATCCCATCTTTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGCTCATTTCA
389 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CCGCCC-TCCGCCCGCTCGTTTCA
* * * *
16743536 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTGAGATCAGACCGGATCGAGGGTTGTGGC
452 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATAGAGGGTTGCGGC
* * * * *
16743601 AGCAGGAT-GAACAGCACACAGAGGGTGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCT
517 AGCAGGATCG-GCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * * * *
16743665 GGCCAGATGAGCGCCCGAACGGTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGT
581 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* ** * * *
16743730 CTAAGCATACGGAGTTCATTCCCAATCTAAGATTGGACCGGACTGAGGGTTGCGGCAGCACATAC
646 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGCAGCACATGC
* * * ** * * * * **
16743795 TGGGATCAGGCAT-TGCTGGAGTTGCATTTTTCTTCGCCGGGGCACCATCGTCAGAGCATCACCG
711 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT-TCTGGGGCACCATCGCCGGAGCATCGTCG
* * *
16743859 AAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGAG-GCGAGGAAGGGTGCGCGCACAT
775 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGG-GTCCG-GG-GGGGTGCGCGCACAT
** *
16743923 GACATGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
837 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* * * *
16743987 AACTCACATCCCCTTAAAGAACATTTAAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGT
1 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * *
16744052 CTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAAT
66 TTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * * *
16744117 TTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGACTAAAACTCCTTC
131 TTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * *
16744182 CGAAAAAATTTTAAAAAAT-CTCGAACCGCAAAAAGTTTCAAAAATCCTGAAAAATAGAAAACAA
196 CGAAAAAATTTTAAAAAATCCT-GAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGA
* * * *
16744246 GTTGTCTTGCCTTGAAACTTCACGTGAAGGCTTAAGGGAACATTGTATGAATTCACAAGCCATAA
260 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * *
16744311 AAATGGCATTGGCAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAT
325 AAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * *
16744376 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGCCTGCTCATTTCTT
390 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CCGCCCTC-CGCCCGCTCGTTTCAT
* * * * *
16744441 CTGTTGGCTCAGGCATACAGAGTTCATTCCCCA-TCTAAGA-CTGGACCAGACCA-AGGGTTGCG
453 CGGTTGGCTTAGGCATACGGAGTTCATT-CCCAGTCTAAGATC-AGACCAGA-TAGAGGGTTGCG
* * * * * * *
16744503 GCAGTAGGATCAGCAGCACACAGAGGGGGACCTGACCGATCCCTGGCTTGCGCATCCCGCCCCTA
515 GCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTC
* * * * * * * *
16744568 AGGCCGACCGAGCGCCCGCACGCTCATTTTGTGGGTTGACTTGGGCATACGGTGTTCATTCCCAT
580 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * * *
16744633 TCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGACTAGA-TCGAGGGTTGCGGCAGCACAT
645 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTACGGCAGCACAT
* * * * * * *
16744697 GCTGGGCTGGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGAGGCACCATCACCGGAGCATTGT
709 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT-TCTGGGGCACCATCGCCGGAGCATCGT
* * * * * * * *
16744762 TGGAGAATCTGATCGACGGCATTGAGGTTCAGGCGATCGGGGGGGCC--GGGGGTGTGCGCACAT
773 CGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGTCCGGGGGGGTGCGCGCACAT
*
16744825 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAG
837 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
*
16744889 AACTCACACCCCCTTAAAGAGCACTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
1 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * * *
16744954 TTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGATGAAC
66 TTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* *
16745019 TTTTTTGGGCATGCCAACAAAAATACAAGGATC-TCGTCTACCAAGTTTGGGGCCGAAACTCCTT
131 TTTTTTGTGCATGCCAACAAAAATACAAGGATCAT-GTCTACCAAGTTTGGGGCCAAAACTCCTT
* * * * **
16745083 TCGAAAAAATTTTAAAAAATCCTGAACCACAAAAAATTTTGAAAATTATGAAAAATAGAAAACGA
195 CCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGA
* * * *
16745148 GTTGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTTCAAGTCATAA
260 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * * *
16745213 GAATGGCATTGGCAAGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
325 AAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * *
16745278 GGCTTGTGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG-C-CCATCCGCCCGCTCGTTTCGTCG
390 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCCTCCGCCCGCTCGTTTCATCG
* * * * * * * **
16745341 GTTGGCTTAGGCATA-TGAGTTCTTTCACAGTCTAAGACCGGACCGGATCGAGGGTTGCCCCA-C
455 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATAGAGGGTTGCGGCAGC
* * * * * *
16745404 AGGATCGGTAGCACACAGAGGGGGACTCGGCCGATCCCTGACTTGTGCATCCCGCCCCTCTGGCC
520 AGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * *
16745469 GACTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
585 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
16745534 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
650 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGCAGCACATGCTGGG
16745599 CTCGG
715 CTCGG
16745604 AGAACCTGAC
Statistics
Matches: 6863, Mismatches: 835, Indels: 385
0.85 0.10 0.05
Matches are distributed among these distances:
862 373 0.05
863 95 0.01
864 35 0.01
865 4 0.00
866 145 0.02
867 2 0.00
868 1 0.00
869 76 0.01
870 518 0.08
871 8 0.00
872 7 0.00
874 4 0.00
875 95 0.01
877 1 0.00
878 154 0.02
879 2 0.00
880 4 0.00
881 1 0.00
883 6 0.00
884 7 0.00
885 2 0.00
886 2 0.00
887 4 0.00
888 2 0.00
889 4 0.00
890 4 0.00
891 27 0.00
892 63 0.01
894 2 0.00
895 139 0.02
896 181 0.03
897 33 0.00
898 39 0.01
899 551 0.08
900 162 0.02
901 226 0.03
902 703 0.10
903 571 0.08
904 544 0.08
905 309 0.05
906 407 0.06
907 604 0.09
908 97 0.01
909 4 0.00
911 6 0.00
912 22 0.00
913 15 0.00
914 25 0.00
915 21 0.00
916 11 0.00
917 7 0.00
918 7 0.00
919 12 0.00
920 19 0.00
921 87 0.01
922 117 0.02
923 78 0.01
924 9 0.00
925 10 0.00
926 7 0.00
927 10 0.00
928 34 0.00
929 11 0.00
931 6 0.00
932 1 0.00
933 3 0.00
934 13 0.00
935 5 0.00
936 5 0.00
937 14 0.00
938 35 0.01
939 3 0.00
940 1 0.00
941 7 0.00
942 1 0.00
943 12 0.00
944 31 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (900 bp):
AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
TTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
TTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTC
CGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAG
TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
AATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCCTCCGCCCGCTCGTTTCATCGG
TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATAGAGGGTTGCGGCAGCA
GGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGCAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCGCATTTTTCTTTCTGGGGCACCATCGCCGGAGCATCGTCGGAGAAC
CTGACCGACGGCATTGGGGTTCCGACGATCGGGGGTCCGGGGGGGTGCGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
Found at i:16741990 original size:26 final size:26
Alignment explanation
Indices: 16741941--16741993 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16741931 GTTGACTTAG
*
16741941 GCATACGGAGTTCATTCCTCGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
16741967 GCATACGGAGTTCATTACC-AGTCTAA
1 GCATACGGAGTTCATT-CCTAGTCTAA
16741993 G
1 G
16741994 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:16743744 original size:26 final size:26
Alignment explanation
Indices: 16743708--16743760 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16743698 GTTGACTTAG
*
16743708 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
16743734 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
16743760 G
1 G
16743761 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:16744650 original size:26 final size:26
Alignment explanation
Indices: 16744612--16744664 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16744602 GTTGACTTGG
* *
16744612 GCATACGGTGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16744638 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16744664 G
1 G
16744665 ATCGGACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16745537 original size:26 final size:26
Alignment explanation
Indices: 16745508--16745560 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16745498 GTTGACTTAG
* *
16745508 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16745534 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16745560 G
1 G
16745561 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16746347 original size:26 final size:26
Alignment explanation
Indices: 16746317--16746368 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
16746307 GTTGACTTAG
16746317 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
16746343 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16746369 AATCGGATCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16747251 original size:21 final size:21
Alignment explanation
Indices: 16747203--16747263 Score: 70
Period size: 21 Copynumber: 2.9 Consensus size: 21
16747193 AAATCCTTCC
16747203 GAAAAAATTTCAAAAAATCTA
1 GAAAAAATTTCAAAAAATCTA
* *
16747224 GACAAAATTTTAAAAAATCTCA
1 GAAAAAATTTCAAAAAATCT-A
*
16747246 -AAAAAATCTCGAAAAAAT
1 GAAAAAATTTC-AAAAAAT
16747264 GTTAAAAAAT
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
21 25 0.76
22 8 0.24
ACGTcount: A:0.61, C:0.11, G:0.05, T:0.23
Consensus pattern (21 bp):
GAAAAAATTTCAAAAAATCTA
Found at i:16747281 original size:11 final size:10
Alignment explanation
Indices: 16747203--16747303 Score: 58
Period size: 11 Copynumber: 9.6 Consensus size: 10
16747193 AAATCCTTCC
*
16747203 GAAAAAATTT
1 GAAAAAATCT
*
16747213 CAAAAAATCT
1 GAAAAAATCT
* *
16747223 AGACAAAATTT
1 -GAAAAAATCT
*
16747234 TAAAAAATCT
1 GAAAAAATCT
*
16747244 CAAAAAAATCT
1 -GAAAAAATCT
*
16747255 CGAAAAAATGT
1 -GAAAAAATCT
*
16747266 TAAAAAATCCT
1 GAAAAAAT-CT
* *
16747277 GAAAAATTTT
1 GAAAAAATCT
*
16747287 TAAAAAATCAT
1 GAAAAAATC-T
16747298 GAAAAA
1 GAAAAA
16747304 TAGAAAACGA
Statistics
Matches: 67, Mismatches: 20, Indels: 7
0.71 0.21 0.07
Matches are distributed among these distances:
10 29 0.43
11 38 0.57
ACGTcount: A:0.59, C:0.10, G:0.06, T:0.25
Consensus pattern (10 bp):
GAAAAAATCT
Found at i:16747282 original size:32 final size:32
Alignment explanation
Indices: 16747204--16747274 Score: 99
Period size: 32 Copynumber: 2.2 Consensus size: 32
16747194 AATCCTTCCG
* * *
16747204 AAAAAATTTC-AAAAAATCTAGACAAAATTTT
1 AAAAAATCTCAAAAAAATCTAGAAAAAATGTT
*
16747235 AAAAAATCTCAAAAAAATCTCGAAAAAATGTT
1 AAAAAATCTCAAAAAAATCTAGAAAAAATGTT
16747267 AAAAAATC
1 AAAAAATC
16747275 CTGAAAAATT
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
31 9 0.26
32 26 0.74
ACGTcount: A:0.61, C:0.11, G:0.04, T:0.24
Consensus pattern (32 bp):
AAAAAATCTCAAAAAAATCTAGAAAAAATGTT
Found at i:16747304 original size:21 final size:20
Alignment explanation
Indices: 16747246--16747304 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 20
16747236 AAAAATCTCA
*
16747246 AAAAAATCTCGAAAAAATGTT
1 AAAAAATCT-GAAAAATTGTT
*
16747267 AAAAAATCCTGAAAAATTTTT
1 AAAAAAT-CTGAAAAATTGTT
16747288 AAAAAATCATGAAAAAT
1 AAAAAATC-TGAAAAAT
16747305 AGAAAACGAG
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.03
21 31 0.91
22 2 0.06
ACGTcount: A:0.59, C:0.08, G:0.07, T:0.25
Consensus pattern (20 bp):
AAAAAATCTGAAAAATTGTT
Found at i:16747710 original size:26 final size:26
Alignment explanation
Indices: 16747680--16747732 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16747670 GTTGACTTAG
*
16747680 GCATACGGAGTTCATTC-CTAGTCTAA
1 GCATACGAAGTTCATTCAC-AGTCTAA
*
16747706 GCATATGAAGTTCATTCACAGTCTAA
1 GCATACGAAGTTCATTCACAGTCTAA
16747732 G
1 G
16747733 ATCGGAATGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCACAGTCTAA
Found at i:16748618 original size:26 final size:26
Alignment explanation
Indices: 16748582--16748634 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16748572 GTTAACTTAG
*
16748582 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
16748608 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16748634 G
1 G
16748635 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16749174 original size:905 final size:899
Alignment explanation
Indices: 16747289--16749508 Score: 3146
Period size: 902 Copynumber: 2.5 Consensus size: 899
16747279 AAAATTTTTA
*
16747289 AAAAATCATGAAAAATAGAAAACGAGTCGTCTCT-CCATGAAACTTCACGTGAAGGCTTAAGGGA
1 AAAAATCGTGAAAAATAGAAAACGAGTCGTCT-TGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* * * * ****
16747353 CCATTGTATGAATTTACAGGCCATAAAAATGGCATTGGCAAGCAGAAATATAAAGATGTGCCTAA
65 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGCAAATAA
* * * ** * *
16747418 ACCCACCTACCGCCCTATCGATCCACGGCTTGCGCATCTCGTCTCCCTGGAAGGCGTAGTACCCA
130 ACCCACCTACCACCCTATCGATCCACGGCATGCGCATCTCGTCTCTCTGGCCGACGTA--ATCC-
* * *
16747483 TCCCCCCTCCT-GCCCGCTGGTTTCATCGGTTGG-TATAGGCATACGGAGTTCATTCCCAGTCTA
192 -CCCCGCTGCTCGCCCGCTCGTTTCATCGGTTGGCT-TAGGCATACGGAGTTCATTCCCAGTCTA
* ** * * * * * * *
16747546 AGATCAAATTAGACCAAGGGTTACGATAGTAGGA-TCGACAGCGCGCAGAGGGGGACTCGGTCGA
255 AGATCAGACCAGACCAAGGGTTACGGTAGTAGGATTTG-CTGCACGCAGAGAGGGACCCGATCGA
** * * * * * * *
16747610 TCCCCACCTTGTGCATTCCGCCCCTCTGGCCGGCTGAGCACCCACACGCTCGTTTCATGGGTTGA
319 TCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTAA
* * * *
16747675 CTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATATGAAGTTCATTCACAGTCTAAGATCGGAA
384 CTTAGGCATACAGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCACAGTCTAAGATCGAAA
* *
16747740 TGGACCGAGGCTTACGACAGCACATGCGGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGT
449 CGGACCGAGGCTTACGACAGCACATGCGGAGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGT
* * *
16747805 CGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACAGCGGCATTGGGGTTCCGACGATCGGG
514 CAGGGCACCATCGTCGGAGCATCGCCGGAGAACCTAACAGCGGCATTGGGGTTCCGACGATCGAG
* * * *
16747870 GGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGTCCCC
579 GGGGCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCATATATTGGCCCC
* *
16747935 CTATCCCTCATGAAACCTCGAGAACTCTCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
644 CTATCCCTCATCAAACCTCGAGAACTCGCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* * *
16748000 CTGCCAGTAGCCATTAAAGTGTCAGGAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
709 CTGCCAGTAGCCATTAAAGTGTCAGAAATTGGGACACATTTTTCAAATGGCCACAAAATCTTGTA
* *
16748065 CACTTTGAGTTTTTAGCTGAATTTTTTTATGCATGCCTAAAAAAATACCAGGATCACGTCTACCA
774 CACTTTGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCA
* *
16748130 ACCTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCCTAAAAAGTTTT
839 ACCTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCCTAAAAAGTTTC
* *
16748191 GAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
1 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
16748256 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGCAAATAAA
66 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGCAAATAAA
* * * *
16748321 CCCACCTACCACCCTATCGATCCATGGCATGCACATCCCGTCTCTCTAGCCGACGTAATGCCCGC
131 CCCACCTACCACCCTATCGATCCACGGCATGCGCATCTCGTCTCTCTGGCCGACGTAAT-CCC-C
16748386 CCGTCTGCTCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
194 CCG-CTGCTCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
** * * * *
16748451 TTGGGCCAGACCAAGGGTTACGGCAGCAGGATTTGCTGCACGCAGAGTGGGACCCGATCGATCCC
258 TCAGACCAGACCAAGGGTTACGGTAGTAGGATTTGCTGCACGCAGAGAGGGACCCGATCGATCCC
*
16748516 CGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTAACTTA
323 CGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTAACTTA
*
16748581 GGCATACAGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-AAACCGG
388 GGCATACAGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCACAGTCTAAGATCGAAA-CGG
* * * * *
16748645 ACCGCGGGTTGCGGCAGCACATGCTGAGCTC-GAGCATGTGCTGGTGCCGCATTTTTCTTCGTCA
452 ACCGAGGCTTACGACAGCACATGCGGAGCTCAG-GCATGTGCTGGTGCCGCATTTTTCTTCGTCA
* * * *
16748709 GGGCACCATCGTCGGATCATTGCGGGAGAACCTAACCAGTGGCATTGGGGTTCCGACGATCGAGG
516 GGGCACCATCGTCGGAGCATCGCCGGAGAACCTAA-CAGCGGCATTGGGGTTCCGACGATCGAGG
* *
16748774 GGGCTAGGGGGTGTTTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGGCCATATATTGGCCC
580 GGGC-AGGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCATATATTGGCCC
16748839 CCTATCCCTCATCAAACCTCGAGAACTCGCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
643 CCTATCCCTCATCAAACCTCGAGAACTCGCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
16748904 GCTGCCAGTAGCCATTAAAGTGTCTA-AAATTGGGACACATTTTTCAAATGGCCACAAAATCTTG
708 GCTGCCAGTAGCCATTAAAGTGTC-AGAAATTGGGACACATTTTTCAAATGGCCACAAAATCTTG
* *
16748968 TACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCGAAAAAAAATACAAGGATCACGTCTAC
772 TACACTTTGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTAC
*** * * *
16749033 CATGTTTGGGGCCAAAAATCTTTCC-AAAGAAATTTTAAAAAATCCTGAACTGC-AAAAAGTTTC
837 CAACCTTGGGGCCAAAAATCCTTCCGAAA-AAATTTTAAAAAATCCCGAAC-CCTAAAAAGTTTC
* * * *
16749096 AAAAATTGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACATGAAGCCTTAAGGGAC
1 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
*
16749161 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGACATGCAAAAATATGAAGATGCAAATAAA
66 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGCAAATAAA
*
16749226 CCCACCTACCACTCTATCGATCCACGGCATGCGCATCTCGTCTCTCTGGCCGACGT-A-------
131 CCCACCTACCACCCTATCGATCCACGGCATGCGCATCTCGTCTCTCTGGCCGACGTAATCCCCCC
* * *
16749283 G-TGCCCGCCCGCTCGTTTCATTGGTTGGCTTAGGAATACGGAGTTCATTCCCAGTCTAAGATCA
196 GCTGCTCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * *
16749347 GACCAGACCAAGGGTTACGGTAGTAGGATTTGCTGCAAGTAGAGAGGGACCC-AGTCGATCCTCG
261 GACCAGACCAAGGGTTACGGTAGTAGGATTTGCTGCACGCAGAGAGGGACCCGA-TCGATCCCCG
* *
16749411 GCTTGCGCATCCCACCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTAACCTAGG
325 GCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTAACTTAGG
* * *
16749476 CATATAGAGTTCATTCCCAATCTAAGCATACGG
390 CATACAGAGTTCATTCCTAGTCTAAGCATACGG
16749509 GACCGTTTGA
Statistics
Matches: 1180, Mismatches: 122, Indels: 41
0.88 0.09 0.03
Matches are distributed among these distances:
892 1 0.00
893 205 0.17
895 1 0.00
899 1 0.00
900 4 0.00
901 10 0.01
902 459 0.39
903 34 0.03
904 9 0.01
905 454 0.38
906 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGCAAATAAA
CCCACCTACCACCCTATCGATCCACGGCATGCGCATCTCGTCTCTCTGGCCGACGTAATCCCCCC
GCTGCTCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
GACCAGACCAAGGGTTACGGTAGTAGGATTTGCTGCACGCAGAGAGGGACCCGATCGATCCCCGG
CTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGC
ATACAGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCACAGTCTAAGATCGAAACGGACCG
AGGCTTACGACAGCACATGCGGAGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCA
CCATCGTCGGAGCATCGCCGGAGAACCTAACAGCGGCATTGGGGTTCCGACGATCGAGGGGGCAG
GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATCCC
TCATCAAACCTCGAGAACTCGCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
TAGCCATTAAAGTGTCAGAAATTGGGACACATTTTTCAAATGGCCACAAAATCTTGTACACTTTG
AGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAACCTTGG
GGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCCTAAAAAGTTTC
Found at i:16749866 original size:26 final size:26
Alignment explanation
Indices: 16749830--16749882 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16749820 CCAGTCTGAT
*
16749830 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16749856 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16749882 C
1 C
16749883 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16751482 original size:868 final size:864
Alignment explanation
Indices: 16749509--16753783 Score: 4664
Period size: 898 Copynumber: 4.9 Consensus size: 864
16749499 AAGCATACGG
* *
16749509 GACCGTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAGGGCTACTGGCAGCAAACCTGTAAAA
1 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* * *
16749574 TTTCAAATGCTCTTTAAAGGGGTATGAGTTCTCGAGGTTTGATGAGGGATA-AGGGGCCAATATA
66 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGA-GGGCCAATATA
* * *
16749638 AAGGCCAAGTACCAGCACCCATCGCACATCATGTACGCACACCCCCCCTGGCCCCCCGATCACCG
130 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCC-GGCCCCCCGATCATCG
* * * *
16749703 AAACCCCAATGCCCCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGATGAAA-AAA
193 GAACCCCAATG---TC-GTC-GG---TCAGGT--T-CTCCGGCGATGGTGCCCCGA-CAAAGAAA
* * * **
16749767 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCGGTCCAG-TCTGATC
246 AAT---------G--C-T---CGAGCCCAGCATATGCT-CCG-AACCCTCGATCTGGTTC-GATC
*
16749831 TTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
293 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * * *
16749896 CCAAACGAGCGTGCGGGTGCTCAGCCAGCCAGAGGGGTGGGATGCGTAAGCCGAGGATCGATCGG
358 CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGG
* ** * * * ** * *
16749961 GTCCCTCTCTGTATGGTATCAATCTTGCTACCGCAACCCTTAGTCCGGTCCAATCTTAGTCTAGG
423 ATCCC-CTCTGCGTGCTGTCAATCCTGCTACCGCAACCCTCGGTCCGGT-CAATCTTAGACTGGG
* * *
16750026 AATGAACTCCTTATGCCTAAGCCAACCGACGAAACGAGAAGGTGGGCGGGTGGGCGTGCACTACG
486 AATGAACTCCGTATGCCTAAGCCAACCGACAAAAC--G-A-GTGGGC--G-GGGCGGGCACTACG
* * *
16750091 CC-AGCCAGAGAGACGGGATGCGCAAGCCATGGATCTATAGGGTGGTAAGTGGGTTTAGGCACAT
544 CCGA-CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
** * *
16750155 CTTCATATTTCTGTGTGCCAACGCCATTTTTATGGCTTGTAAATTCATACAATGGTCTCTTAAGC
608 CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * * * *
16750220 CTTCACGTGAAGTTTCATAGCAAGACAACTCGTTTTCTATATTTCATGATTTTTGAAACTTTTTG
673 CTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTA
* * * *
16750285 CGGTTTAGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCTCCAAACTTGGTAGACGTGATCC
738 CGG-TTCGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCC
* * *
16750350 TTTTATTTTTGTTGGCATGCACAAAAAAAGTCAGCTAAAAA-TCCAAAGTGTATAAGATTTTGT
802 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT-CAAAGTGTACAAGATTTTGT
* *
16750413 GACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAA
1 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* * *
16750478 TCTCAAATGCTCTTTAAGGTGGTGTGAGTTCTCGAGGTATGATGAGGGATAG-GGAG-CAATCTA
66 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGG-GCCAATATA
* * *
16750541 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGGCCCCCACCATC-GCTG
130 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC-CGATCATC-G
* * *
16750605 GATCCCCAATGTTGTCGGTTAGGTTCTCCGGCGATGGTGCCCCGACAAAGAAAAATGCTCGAGCC
193 GAACCCCAATGTCGTCGGTCAGGTTCTCCGGCGATGGTGCCCCGACAAAGAAAAATGCTCGAGCC
* * * *
16750670 CAGCATTTGCTGCTGCAACCCTCGATCTGGTTCGATCTTAGACTGGGAATGAACTTCGTTTGCTT
258 CAGCATATGCT-CCG-AACCCTCGATCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTT
** ** * *
16750735 AGACTACGAATGAGA-TCCGTATGCCTAAGTCAACAAACGAAACAAGCGTGCGGGTGCTCAGCCG
321 AGACTGGGAATGA-ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * *
16750799 GCCAAAGGGGCGGGATGCACAAGCCGGGGATCGGTTGGATCTCCCTCTGCGTGCTGTCAATCCTG
385 GCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGATC-CCCTCTGCGTGCTGTCAATCCTG
* * *
16750864 CTACTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACC
449 CTACCGCAACCCTCGGTCCGGTC-AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* *
16750929 GACAAAATGAGTGGGC-GGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGAT
513 GACAAAACGAGTGGGCGGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGAT
* *
16750993 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCTATTTTTATGG
578 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
* * *
16751058 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGATGACTCGTTT
643 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTT
** * * *
16751123 TCTATTTTTCACAAATTTTGAAACTTTTTATGGTTCGG-TATTTTTAAAATTTTTTCGGACGGAG
708 TCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGAT-TTTTTAAAATTTTTTCGGAAGGAG
*
16751187 TTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCACC
772 TTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
* *
16751252 TAAAAACACGAAGTGTACAAGATTTTGT
837 TAAAAACTCAAAGTGTACAAGATTTTGT
* * * *
16751280 GACCATTTCAAAAGAGTGTCCCCATTTCAGACACTTTAATGGCTACGGGCAACAAACCTGTAAAA
1 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* *
16751345 TCTCAAATGCTCTTTAAGGGGGGGCGAGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATATAA
66 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATATAA
* *
16751410 GGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCGGCCTCCTCGATCATCGGA
131 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC-CCCCGATCATCGGA
* * *
16751475 ACCCCAATGTCGCCGGTCAGGTTCTCCGACAATGTTCCGACGATGGTGCCCCGGTGAAAAAAAAT
195 ACCCCAATGTCGTCGGTCAGGTTCT-C--C---G----G-CGATGGTGCCCC---GACAAAGAA-
* * * *
16751540 GCGGTACCGGCACATGCCCGAGCCCAGCATGTGCTACCATAACCCTCGATCCGG-TCTGATCTTA
245 -----A-----A-ATGCTCGAGCCCAGCATATGCT-CC-GAACCCTCGATCTGGTTC-GATCTTA
* * *
16751604 GACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAATCAACCCACCA
296 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * * * *
16751669 AATGAGCGTGCGGGCACTCAACCGGCCAGAGGGGCGGGATGCGCAAGTCGAGGATCGATCAGG-T
361 AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTC-GGAT
* * * *
16751733 CTCCCTCTGCGTGCAGTCAATCCTGCTACCACAACCCTCAGTCCGATCTAATCTTAGACTGGGAA
425 C-CCCTCTGCGTGCTGTCAATCCTGCTACCGCAACCCTCGGTCCGGTC-AATCTTAGACTGGGAA
* * * * * * *
16751798 TGAACTTCGTATAG-CTAAGCCAAGCGACGAAACAAGCGGGCGGGCGGGCGGGGATTACGCCGAC
488 TGAACTCCGTAT-GCCTAAGCCAACCGACAAAACGAGTGGGC--G-GGGCGGGCACTACGCCGAC
* * * * * *
16751862 TAGAGAGACGGGATGTGCAAGCTGTGGATCGATAGTGTGGTAAGTGGGTTTAGGCATATCTTCAT
549 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
*
16751927 ATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
614 ATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* * ** * ** ***
16751992 GTGAAGTTTCATGGCAAGATGACTCATTTTTTATTTTTCACAAATTTCCAAACTTTTTGTTGTTC
679 GTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTC
* * * *
16752057 GGGATTTTTTAAAATTTTTTCGGAAGGTGTTTTGG-CACAAACTTGGTAGACGTGATCTTTGTAT
744 -GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTAT
* * * * *
16752121 TTTTTTTGGCATGCACAAAAAATTTCAGCTAAAAACTCGATGTGTACAAGACTTTGT
808 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGT
* *
16752178 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTCAATGGCTACTGGCAGCAAACTTGTAAAA
1 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* * *
16752243 TCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGACGAGGGATAGGGGGCCAATATAA
66 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATATAA
* * * *
16752308 GGGCCAAGTACCAGCACCCATCGCACAACGTGTGCGCACACCCCCCGGCCCCTTCGATCGTCGGA
131 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC-CCGATCATCGGA
* * * **
16752373 ACCCCAATGTCGCCGGTCAGGCTCTCCGGTGATGGTG-CCCGATGAAGAAAAATG--CG-GCACC
195 ACCCCAATGTCGTCGGTCAGGTTCTCCGGCGATGGTGCCCCGACAAAGAAAAATGCTCGAGC-CC
* * * * * * * ****
16752434 AGCACATGC-CCGAGCCC-AGCATGTGCTGCGA-C--A-ACCTTTGG--TCCGGTCCG-AT-CTT
259 AGCATATGCTCCGAACCCTCG-ATCTGGTTCGATCTTAGA-C-TGGGAATGAACTCCGTATGCTT
*
16752489 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGACACGAGCGTGCGGGCGCTCAGCCGG
321 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * * * ** * * * *
16752554 CTAGTGGGACGGGATGCGTAAGCCGAGGATCGG-CCAAGTCCTACTCTGTGTGCT-ACTGATCCT
386 CCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGA-TCC-CCTCTGCGTGCTGTC-AATCCT
* * *
16752617 GCTACCGCAACCCTTGGTCCGGTCCATTCTTAGACT-GGAATGAACTCGGTATGCCTAAGCCAAC
448 GCTACCGCAACCCTCGGTCCGGT-CAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
** * * * * *
16752681 CGATGAAACGAGTTGGCGGGTAGAAGGGCACTACACCGGCCAGAGAGACAGGATGCGCAAGCCGT
512 CGACAAAACGAGTGGGCGGG--G-CGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGT
* * *
16752746 GGATCGATAGGGTGGTAGGTTGGTTTAGGCACATCTTCATATTTCTACATGCCAGTGCCATTTTT
574 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
16752811 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
639 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
*
16752876 ATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTGTTTT-GGA
704 ATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTC-GGATTTTTTAAAATT-TTTTCGGA
** * * *
16752940 ACAAGCTTTGGCCCCAAACTTGGTAGACATGATCATTGTATTTTTGTTGGCATGCAAAAAAAAAT
767 AGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
*
16753005 TTAGCTAAAAACTCAAAGTGTACAAGATTTTGT
832 TCAGCTAAAAACTCAAAGTGTACAAGATTTTGT
16753038 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
1 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* *
16753103 TCTCAAATGCTCTTTAAGGGGGTGTAAGTTCTCGAGG-TT--T----GAT-GAGGGCCAATATGA
66 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATATAA
* * *
16753160 GGGCCAAGTACCAGCACCCATCGCACATTATGTGCGCACAGCCCCCCCGACCCCCCGATCGTCGG
131 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCCCGGCCCCCCGATCATCGG
* * * * * *
16753225 AACCTCAATG-CTGTCGGTCAAGTTCTCCAGTGATGGTGCCCCGACGAAGAAAAATG-T-G-GAC
194 AACCCCAATGTC-GTCGGTCAGGTTCTCCGGCGATGGTGCCCCGACAAAGAAAAATGCTCGAGCC
* * * * * * * * ** * * * *
16753286 CAGCACACGC-CCGAGCCC-AGCATGTGCTGCCG--C-AACCCTTGGTACG--GTCCG-AT-CTT
258 CAGCATATGCTCCGAACCCTCG-ATCTGGT-TCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* *
16753342 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGTTCAGCCGG
321 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * * * * *
16753407 CCAGAGGGGCGGGATACGCAAGCC-AGGGATTGGCCGGGTCCCCCTCTGCGTGTTGTCGATCCTG
386 CCAGAGGGGCGGGATGCGCAAGCCGA-GGATCGGTCGGAT-CCCCTCTGCGTGCTGTCAATCCTG
* * * *
16753471 CTGCCGCAACCCTCGGTTCGATCAATTCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACC
449 CTACCGCAACCCTCGGTCCGGTCAA-TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * *
16753536 GACGAAATGAGTTGGCGGACGGGCAGGCGGGCACTACGCCGGCCAAAGAGACGGGATGCGTAAGC
513 GACAAAACGAG-T-G-GG-C-GG--GGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGC
* *** *
16753601 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTATGTGCCAGTGCCATT
571 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* * *
16753666 TTTATGGCTTGTAAATTCATACAATAGTCCCTTAAGCCTTCATGCGAAGTTTCATGGCAAGACGA
636 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* *
16753731 CTCATTTTCTATTTTTCATGATTTTTGAAATTTTTTGCGGTTCGAGATTTTTT
701 CTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCG-GATTTTTT
16753784 GAGCTCCGTA
Statistics
Matches: 2922, Mismatches: 355, Indels: 234
0.83 0.10 0.07
Matches are distributed among these distances:
852 53 0.02
853 217 0.07
854 74 0.03
855 1 0.00
856 2 0.00
857 3 0.00
858 208 0.07
859 253 0.09
860 312 0.11
861 4 0.00
862 5 0.00
863 2 0.00
864 3 0.00
865 2 0.00
866 10 0.00
867 221 0.08
868 275 0.09
869 16 0.01
871 4 0.00
872 7 0.00
873 1 0.00
874 2 0.00
875 1 0.00
876 226 0.08
877 6 0.00
878 1 0.00
879 13 0.00
880 1 0.00
882 8 0.00
883 6 0.00
886 3 0.00
887 7 0.00
888 2 0.00
890 3 0.00
891 26 0.01
892 2 0.00
893 4 0.00
894 240 0.08
895 4 0.00
897 5 0.00
898 476 0.16
899 30 0.01
900 1 0.00
901 8 0.00
902 19 0.01
903 47 0.02
904 108 0.04
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (864 bp):
GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATATAA
GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCATCGGAA
CCCCAATGTCGTCGGTCAGGTTCTCCGGCGATGGTGCCCCGACAAAGAAAAATGCTCGAGCCCAG
CATATGCTCCGAACCCTCGATCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
GGGGCGGGATGCGCAAGCCGAGGATCGGTCGGATCCCCTCTGCGTGCTGTCAATCCTGCTACCGC
AACCCTCGGTCCGGTCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAAC
GAGTGGGCGGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTT
TCATGATTTTTGAAACTTTTTACGGTTCGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCC
CAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
AAAGTGTACAAGATTTTGT
Found at i:16751636 original size:26 final size:26
Alignment explanation
Indices: 16751600--16751652 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16751590 CCGGTCTGAT
16751600 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16751626 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16751652 C
1 C
16751653 CTAAATCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16756142 original size:26 final size:26
Alignment explanation
Indices: 16756080--16756143 Score: 101
Period size: 26 Copynumber: 2.5 Consensus size: 26
16756070 TCGGTCCAGT
*
16756080 AACTCCGTATGCTTAGACTGGGAATG
1 AACTCCGTATGCTTAGACTGAGAATG
*
16756106 AACTCCATATGCTTAGACTGAGAATG
1 AACTCCGTATGCTTAGACTGAGAATG
*
16756132 AACTTCGTATGC
1 AACTCCGTATGC
16756144 CTAAGTCAAC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (26 bp):
AACTCCGTATGCTTAGACTGAGAATG
Found at i:16757009 original size:26 final size:26
Alignment explanation
Indices: 16756973--16757025 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16756963 CTGGTCCAAT
16756973 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
16756999 CTTAGTCTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16757025 C
1 C
16757026 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16757551 original size:890 final size:894
Alignment explanation
Indices: 16755523--16757762 Score: 2987
Period size: 890 Copynumber: 2.5 Consensus size: 894
16755513 TTTCTTCATC
*
16755523 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCA
1 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
** * * * *
16755588 TGGCATTACGACTCGTTTTCTATTTTTCATAATTTTTGAAACTTTTT-TCAGTTCGAGTTTTTTT
66 TGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAT-GGTTTGAGATTTTTT
* * * *
16755652 AAAATTTTTTCGAAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGTC
130 AAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAATTTTTTTGGC
*
16755717 ATGCACAAAAAAATTCAGCTAAAAAC-CTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAGGT
195 ATGCACAAAAAAATTCAGCTAAAAACTC-GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
* * * * *
16755781 GTCCCCATTTCAGACACTTTAATGGGTATTGGCAGCAAACCCGTAAAATCTCAAATGCTCTTTAT
259 GTCCCCATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* *
16755846 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGCATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
324 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGACA-GGGGCCAATATAAGGGCCAAGTACCAGCAC
* * * *
16755911 CCATCGCACATCATGTGCGCACACCCCCCAGGCCCCCCCGATCGCTGGAACCCCAATGCCGTCGG
388 CCATCGCACATCATGTGCGCACACCCCCCACGCCCCCCCGATCGCCGGAACCCCAATGCCGCCAG
**
16755976 TCAGGTTCTCTGGCGATGCTCCAGCGATGGTGCCCCGGCGAAGAAAAATGTGGCACCAGCAAATG
453 TCAGGTTCTCT-GC-A-G---CAGCGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCAAATG
* * * * *
16756041 CTCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCAGTAACTCCGTATGCTTAGACTGGGAATG
512 CTCGAGCCCAGCATATGCTACCGCAACCCTCGATCCA-TAACTCCGAATGCTTAGACTGGGAATG
16756106 AACTCCATATGCTTAGACTGAGAATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTGC
576 AACTCCATATGCTTAGACTGAGAATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTGC
* * * * * *
16756171 GGGCGCTCAGTCGGACAGAGGGGCGGGATGCGCAAGTCGGGGATTGACCGGGTCCCCCTCCACAT
641 GGGCGCTCAGTCCGACAGAGGGGCGGCATGCGCAAGCCGAGGATCGACCGGATCCCCCTCCACAT
* * * *
16756236 GCTGCCGATCCTGAAGCCCCAACCCTCAGTCTAGTCTGATCTTAGGCTGGGAATGAACTCCGTAT
706 GCTGCCGATCCTGAAGCCACAACCCTCAGTCTAGTCTGATCTTAGACTGGGAATGAACGCCATAT
* *
16756301 GCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCCCTACGCGGGCCAGGGAGACAGGAAGCG
771 GCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCCCTACGCCGGCCAGAGAGACAGGAAGCG
* *
16756366 CAAGCCGTAGATCGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCGATGTG
836 CAAGCCGTAGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCGACGTG
* *
16756425 CCAATGCCATTTTTATGGCTTGTAAATTCGA-ACAATGGTCCCTTCAGCCTTCACGTTAAGTTTC
1 CCAATGCCATTTTTATGGCTTGTAAATTC-ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* * *
16756489 ATGGCAAGAC-ACTTGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGAGATTTTTT
65 ATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTTGAGATTTTTT
* * *
16756553 AAAAATTTTTTGAAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCGTTGT-ATTTTTGTTGG
130 AAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAATTTTT-TTGG
* *
16756617 CATGCACACAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
194 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
* *
16756682 GTCCCCATTTCAGACACTTTAATTGCTACTGGTAGCAAACCTGGAAAATCTCAAATGCTCTTTAA
259 GTCCCCATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* *
16756747 GGGGGTGTGAGTTCTCAAGGTTTGATGAGGGACAGTGGGCCAATATAAGGGCCAAGTACTAGCAC
324 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGACAG-GGGCCAATATAAGGGCCAAGTACCAGCAC
* * * * *
16756812 CCATCACACATCATGTGCGCACACCCCCCCCG-TCCCCCGATTGCCGGAA-CCTAATGCCGCCAG
388 CCATCGCACATCATGTGCGCACACCCCCCACGCCCCCCCGATCGCCGGAACCCCAATGCCGCCAG
* * * ** *
16756875 TCAGGTTCT-T-C-G-A-CGATGGTGCCTCGGTGGAGAAAAATACGGTGCCAGCAGATGCTCGAG
453 TCAGGTTCTCTGCAGCAGCGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCAAATGCTCGAG
** *
16756935 CCCAGCATATGCTACCGCAACCCTCGAT-C-T-GGTCC-AAT-CTTAGACTGGGAATGAACTCCG
518 CCCAGCATATGCTACCGCAACCCTCGATCCATAACTCCGAATGCTTAGACTGGGAATGAACTCCA
* * *
16756995 TATGCTTAGTCTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
583 TATGCTTAGACTGAGAATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCT
* * * ****
16757060 CAG-CCGACCAGAGGGGTGGCATGTGCAAGCCTAGGATCGACCGGATCCCCCTCTGTGTGCTGCC
648 CAGTCCGA-CAGAGGGGCGGCATGCGCAAGCCGAGGATCGACCGGATCCCCCTCCACATGCTGCC
** *
16757124 GATCCTGCTGCCACAACCCTC-GATCT-GATTTGATCTTAGACTGGGAATGAACGCCATATGCCT
712 GATCCTGAAGCCACAACCCTCAG-TCTAG-TCTGATCTTAGACTGGGAATGAACGCCATATGCCT
* * *
16757187 AAGCCAACCGATGAAACGAGCAGGCGAGCGGGCGGGCGGGCTCTACGCCGGCTAGAGAGACGGGA
775 AAGCCAACCGACGAAACGAGCA---G-GCGGGCGGGC---C-CTACGCCGGCCAGAGAGACAGGA
* * * * * *
16757252 TGCGCAAGCTGTGGATCGATAGGTTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTACGTG
832 AGCGCAAGCCGTAGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCGACGTG
* * *
16757315 CCAATGCCATTTTTATGGCTTGCAACTTCATACAATGGTCCCTTAAGGCTTCACGTGAAGTTTCA
1 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * *
16757380 TGGCAAGACGACTCATTTTTTATTTTTCATGA-TTTTCAAACTTTTTATGGTTT-AGGATTTTTT
66 TGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTTGA-GATTTTTT
* * * * * * * *
16757443 AAAATTTTTTTGGAAGGAGATTTGGCTCGAAACTTAGAAGACGTAATCCTTGTAATTTTTTGGGC
130 AAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAATTTTTTTGGC
* *
16757508 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTATAAGATTTTGTGACCTTTTGAAAAAAGTG
195 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
*
16757573 TCCCCATTTCAAACACTTTAA-TGCCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
260 TCCCCATTTCAGACACTTTAATTG-CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* *
16757637 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGACAGGGGCCAATATACGAGCCAAGTACCAGCACC
324 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGACAGGGGCCAATATAAGGGCCAAGTACCAGCACC
** ** * ** *
16757702 CATCGCACATCATGTGCTTACACCTCCCCTGGCCCCCTCGATCATCGAAACCCCAATGCCG
389 CATCGCACATCATGTGCGCACACC-CCCCACGCCCCCCCGATCGCCGGAACCCCAATGCCG
16757763 AGGATCTGTT
Statistics
Matches: 1175, Mismatches: 139, Indels: 58
0.86 0.10 0.04
Matches are distributed among these distances:
881 5 0.00
882 203 0.17
883 2 0.00
884 3 0.00
885 2 0.00
886 10 0.01
887 1 0.00
888 63 0.05
889 54 0.05
890 373 0.32
891 35 0.03
892 9 0.01
893 1 0.00
896 1 0.00
898 1 0.00
899 20 0.02
900 20 0.02
901 303 0.26
902 68 0.06
903 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.27
Consensus pattern (894 bp):
CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
TGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTTGAGATTTTTTA
AAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAATTTTTTTGGCA
TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
CCCCATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
GGGTGTGAGTTCTCGAGGTTTGATGAGGGACAGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
TCGCACATCATGTGCGCACACCCCCCACGCCCCCCCGATCGCCGGAACCCCAATGCCGCCAGTCA
GGTTCTCTGCAGCAGCGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCAAATGCTCGAGCCC
AGCATATGCTACCGCAACCCTCGATCCATAACTCCGAATGCTTAGACTGGGAATGAACTCCATAT
GCTTAGACTGAGAATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAG
TCCGACAGAGGGGCGGCATGCGCAAGCCGAGGATCGACCGGATCCCCCTCCACATGCTGCCGATC
CTGAAGCCACAACCCTCAGTCTAGTCTGATCTTAGACTGGGAATGAACGCCATATGCCTAAGCCA
ACCGACGAAACGAGCAGGCGGGCGGGCCCTACGCCGGCCAGAGAGACAGGAAGCGCAAGCCGTAG
ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCGACGTG
Found at i:16758577 original size:26 final size:26
Alignment explanation
Indices: 16758548--16758600 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16758538 CTAGTCCGAT
16758548 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
16758574 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16758600 C
1 C
16758601 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16761305 original size:873 final size:863
Alignment explanation
Indices: 16759467--16762094 Score: 3031
Period size: 873 Copynumber: 3.0 Consensus size: 863
16759457 ACTGGGAATG
16759467 TGTACACTTCGAA-TTTTTAGCTGAATTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCT
1 TGTACACTTC-AAGTTTTTAGCTGAATTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCT
* * * *
16759531 ACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATGTTAAAAAATCCTGAACCACAAAAAGTTTC
65 ACCAAGTTTTGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTC
*
16759596 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAT
130 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
16759661 CATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCATGCAA-AAATATGAAGATGTGCCTAA
195 CATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCA--CAAGAAATATGAAGATGTGCCTAA
* *
16759725 ACCCACCTACCATCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG-GT-GTAG-TGC
258 ACCCACCTACCA-CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGCGTAAT-GCCGC
* * * ***
16759787 CTGCCCGCCCGCTCGTTACGTCGGTTCGC-T----ATACGGAGTTCATTCCCAGTCTAAGATCAC
321 CTGCCCGCCCTCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGG
* * * * ** * * * *
16759847 ACCGGACTGAGGGTTGTGGTAGTAGGATCGACAGCACACAGAGAGAGACCCAACCGATCCCCGGC
386 ATCGGACTGAGGGTTGCGGTAGCAGGATCGGCAGCATGCAGAGAGGGACCCGATCGAT-CCCGAC
* * * *
16759912 TTGCGCATCCCGCTCCTCTAGCTAGCTGAGTGCCCGCACATTCATTTCGTGGGTTGATTTAGGCA
450 TTGCGCATCCCGC-CCTCTGGCTAGCTGAGCGCCCG--CATGC---TCGT---TTG--GT-GGC-
* * * *
16759977 TACGAAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGA
502 T-TG-A---C-TT---AG-----GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGA
* * ** *
16760042 GGGTTGTGATAGCACATGCTGGGCTCGGGCATGTGCTGGTACCACATTTTTCTTCACCGGGGCAC
553 GGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCACATTTTTCTTCACTGGGGCAC
* *
16760107 CAT--C---G--T--CGGAGAACCTGACCGGCAACATTGGGGTTCCGACGATCGGGGAGGCCGGG
618 CATCGCGGAGCATCACGGAGAACCTGACCGACAGCATTGGGGTTCCGACGATCGGGG-GGCCGGG
*
16760163 CTGGTGTGCGCACATGATGTGCAATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
682 -TGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* * **
16760228 CATCAAACCTCGAGAACTCGCACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGTCAGT
746 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGT
* *
16760293 AGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
811 AGCCGTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
*** * *
16760346 TGTACACTTTGGGTTTTTAGCTGACTTTTTTTGTGCATGCCAAAAAAAATAAAAGGATCACATCT
1 TGTACACTTCAAGTTTTTAGCTGA-ATTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCT
*
16760411 ACCAAG-TTTGGAGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
65 ACCAAGTTTTGG-GCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTT
* * * **
16760475 CAAAATTCATGAAATATAGAAAACGAGTCGTCTTGCTGTGAAACTTCACGTGAAGGCTTAAGGGA
129 CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
*
16760540 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAA
194 CCATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCACA-AGAAATATGAAGATGTGCCTAA
*
16760605 ACCCACCTACCACACTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAATGCACG
258 ACCCACCTACCAC-CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG-CGTAATGC-CG
* * * *
16760670 CCTGCCCGCCTTCTCGTTTCATCGGTTGGCTTAGGCATAAGGAGTTCATTCCCAGACTAAGATTG
320 CCTGCCCGCCCTCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTG
* * * * * * * * *
16760735 GATCAGATTGAGGGTTGCGGCAGCAAGATTGGTACCATGCGGAGGGGGACCCGATCGATCCTCGA
385 GATCGGACTGAGGGTTGCGGTAGCAGGATCGGCAGCATGCAGAGAGGGACCCGATCGATCC-CGA
* ** * *
16760800 CTTGCGCATCCCACCACTCTGGCCGGCTAAGCGCCTGCATGCTCGTTTGGTGGCTTGACTTAGGC
449 CTTGCGCATCCCGCC-CTCTGGCTAGCTGAGCGCCCGCATGCTCGTTTGGTGGCTTGACTTAGGC
* *
16760865 ATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGTGGGTTGCGACAGCACATGCTGGGCT
513 ATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGACAGCACATGCTGGGCT
** *
16760930 CGGGCATGTGCTGGTGTTGCATTTTTCTTCACTAGGGCACCATCGCCGGAGCATCACCGGAGAAC
578 CGGGCATGTGCTGGTGTCACATTTTTCTTCACTGGGGCACCATCG-CGGAGCATCA-CGGAGAAC
* * *
16760995 CTGACCGACGGCATTGGGGTTTC-AGCGATCGGGGGGCCAGGGTGGTGTGCGCACATGATGTGCG
641 CTGACCGACAGCATTGGGGTTCCGA-CGATCGGGGGGCC-GGGTGGTGTGCGCACATGATGTGCA
16761059 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
704 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
16761124 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCGTTAAAGTGTTTGAAATGG
769 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCGTTAAAGTGTCTGAAATGG
*
16761189 GGACACTTTTTTCGAATGGTCACAAAATCT
834 GGACACTTTTTTCAAATGGTCACAAAATCT
* *
16761219 TGTACACTTCAAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
1 TGTACACTTCAAGTTTTTAGCTGAAT-TTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCT
* * * * * *
16761284 ACCATGTTTTGGGCAAAAACTCCTTCCGAAAAAATTTTGAAAAATCTCGAACGGCAAAAAGTTTC
65 ACCAAGTTTTGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTC
* *
16761349 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGTCTTAACGGAC
130 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
16761414 CATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCATGC-AGAAATATGAAGATGTGCCTAA
195 CATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCA--CAAGAAATATGAAGATGTGCCTAA
* ** * * * * *
16761478 ACTCATGTACCACCCTATCGATCCACGGCTTGTGCGTCCCATCTCTCTGGTCTGCGTAGTGCCCG
258 ACCCACCTACCA-CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG-CCGCGTAATG-CCG
** * *
16761543 CCCACTCGCCCGT-TCGTTTCGTCGGTTGGCTAAGGCATACGGAGTTCATTCCCAGTCTAAGATT
320 CCTGCCCGCCC-TCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATT
* ** * * * * *
16761607 GGATTGGACCAAGGGTTACGATAGCAGGATCAGCAGCATGCAGAGTGGGACCTGATCGATCCCGA
384 GGATCGGACTGAGGGTTGCGGTAGCAGGATCGGCAGCATGCAGAGAGGGACCCGATCGATCCCGA
* * * * *
16761672 CTTGCACATCCCGCCCCTCTGGCTAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGATTTAGGC
449 CTTGCGCATCCCG-CCCTCTGGCTAGCTGAGCGCCCGCATGCTCGTTTGGTGGCTTGACTTAGGC
* *
16761737 ATACGAAGTTCATTCCTAGTCTAAGCATACAGTGTTCATTACCAGTCTACGATCGGACCAGACCG
513 ATACGGAGTTCATTCCCAGTCTAAG-AT-C---G----------G---AC--T--G----GACCG
* * * *
16761802 AGGGTTAC-AGCAACACATGCTGGGCTCGGGCATGTGCTGGTGTCATATTTTTTTTCA-TCGGGG
552 AGGGTTGCGA-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCACATTTTTCTTCACT-GGGG
* * * * *
16761865 CACCATCGTCGGAGCATCGAC-GAGAACCTGACCGCCCGTATTGGGGTTCCGATGATCGAGGGGC
615 CACCATCG-CGGAGCATC-ACGGAGAACCTGACCGACAGCATTGGGGTTCCGACGATCGGGGGGC
* * * *
16761929 CGGGGGGGTGTGCGGACATGATGTGCAATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCTTAT
678 C-GGGTGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * * * *
16761994 CCCTCATCAAACCTCAAAAACCCATACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCCAC
742 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTAC
16762059 CAGTAGCCGTTAAAGTGTCTGAAATGGGGACACTTT
807 CAGTAGCCGTTAAAGTGTCTGAAATGGGGACACTTT
16762095 GTAAACACCC
Statistics
Matches: 1498, Mismatches: 181, Indels: 122
0.83 0.10 0.07
Matches are distributed among these distances:
863 97 0.06
866 1 0.00
868 2 0.00
869 1 0.00
871 3 0.00
872 80 0.05
873 556 0.37
874 50 0.03
875 2 0.00
876 1 0.00
877 2 0.00
878 5 0.00
879 27 0.02
880 260 0.17
881 3 0.00
882 3 0.00
883 1 0.00
884 30 0.02
885 1 0.00
887 5 0.00
888 3 0.00
889 95 0.06
890 2 0.00
892 1 0.00
894 1 0.00
897 191 0.13
898 74 0.05
899 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (863 bp):
TGTACACTTCAAGTTTTTAGCTGAATTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTA
CCAAGTTTTGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCA
AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
ATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCACAAGAAATATGAAGATGTGCCTAAACC
CACCTACCACCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGCGTAATGCCGCCTGCC
CGCCCTCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGG
ACTGAGGGTTGCGGTAGCAGGATCGGCAGCATGCAGAGAGGGACCCGATCGATCCCGACTTGCGC
ATCCCGCCCTCTGGCTAGCTGAGCGCCCGCATGCTCGTTTGGTGGCTTGACTTAGGCATACGGAG
TTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATG
TGCTGGTGTCACATTTTTCTTCACTGGGGCACCATCGCGGAGCATCACGGAGAACCTGACCGACA
GCATTGGGGTTCCGACGATCGGGGGGCCGGGTGGTGTGCGCACATGATGTGCAATGGGTGCTGGT
ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
CATTTGAGATTTTACAGGTTTGCTACCAGTAGCCGTTAAAGTGTCTGAAATGGGGACACTTTTTT
CAAATGGTCACAAAATCT
Found at i:16762313 original size:21 final size:17
Alignment explanation
Indices: 16762279--16762341 Score: 53
Period size: 17 Copynumber: 3.7 Consensus size: 17
16762269 TTTCTGTTAA
*
16762279 TATTTATAT-GTAT-TT
1 TATTTATATATTATATT
16762294 TATTTATATAGTTCTATATT
1 TATTTATATA--T-TATATT
16762314 TA-TTATATATTATAATT
1 TATTTATATATTAT-ATT
16762331 TATTTAT-TATT
1 TATTTATATATT
16762342 TTTTTTTCTT
Statistics
Matches: 40, Mismatches: 1, Indels: 12
0.75 0.02 0.23
Matches are distributed among these distances:
15 9 0.22
16 3 0.08
17 10 0.25
18 4 0.10
19 10 0.25
20 4 0.10
ACGTcount: A:0.32, C:0.02, G:0.03, T:0.63
Consensus pattern (17 bp):
TATTTATATATTATATT
Found at i:16762331 original size:17 final size:19
Alignment explanation
Indices: 16762292--16762334 Score: 54
Period size: 17 Copynumber: 2.3 Consensus size: 19
16762282 TTATATGTAT
*
16762292 TTTATTTATATAGTTCTATA
1 TTTA-TTATATAGTTATATA
16762312 TTTATTATATA-TTATA-A
1 TTTATTATATAGTTATATA
16762329 TTTATT
1 TTTATT
16762335 TATTATTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 7 0.32
18 4 0.18
19 7 0.32
20 4 0.18
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (19 bp):
TTTATTATATAGTTATATA
Found at i:16763459 original size:17 final size:17
Alignment explanation
Indices: 16763437--16763504 Score: 59
Period size: 17 Copynumber: 3.9 Consensus size: 17
16763427 TTTAATATTC
16763437 TTTTTATCTTTATTTTA
1 TTTTTATCTTTATTTTA
* *
16763454 TTTTTATTTTTGTTTTA
1 TTTTTATCTTTATTTTA
*
16763471 -CTTT-TCTTTATTTTTTA
1 TTTTTATCTTTA--TTTTA
*
16763488 TTTTTATTTTTTATTTT
1 TTTTTA-TCTTTATTTT
16763505 TATTATTCTA
Statistics
Matches: 39, Mismatches: 7, Indels: 9
0.71 0.13 0.16
Matches are distributed among these distances:
15 4 0.10
16 3 0.08
17 20 0.51
18 7 0.18
20 5 0.13
ACGTcount: A:0.13, C:0.04, G:0.01, T:0.81
Consensus pattern (17 bp):
TTTTTATCTTTATTTTA
Found at i:16763486 original size:11 final size:10
Alignment explanation
Indices: 16763445--16763505 Score: 61
Period size: 11 Copynumber: 5.9 Consensus size: 10
16763435 TCTTTTTATC
16763445 TTTATTTTATT
1 TTTATTTT-TT
16763456 TTTATTTTTGT
1 TTTATTTTT-T
* *
16763467 TTTACTTTTC
1 TTTATTTTTT
16763477 TTTATTTTTT
1 TTTATTTTTT
*
16763487 ATTT-TTATTT
1 -TTTATTTTTT
16763497 TTTATTTTT
1 TTTATTTTT
16763506 ATTATTCTAT
Statistics
Matches: 41, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
9 3 0.07
10 18 0.44
11 20 0.49
ACGTcount: A:0.13, C:0.03, G:0.02, T:0.82
Consensus pattern (10 bp):
TTTATTTTTT
Found at i:16763489 original size:7 final size:7
Alignment explanation
Indices: 16763477--16763518 Score: 52
Period size: 7 Copynumber: 6.1 Consensus size: 7
16763467 TTTACTTTTC
16763477 TTTATTT
1 TTTATTT
16763484 TTTA-TT
1 TTTATTT
16763490 TTTATTT
1 TTTATTT
16763497 TTTA-TT
1 TTTATTT
16763503 TTTATTAT
1 TTTATT-T
*
16763511 TCTATTT
1 TTTATTT
16763518 T
1 T
16763519 CTTTAAATAA
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
6 12 0.39
7 13 0.42
8 6 0.19
ACGTcount: A:0.17, C:0.02, G:0.00, T:0.81
Consensus pattern (7 bp):
TTTATTT
Found at i:16763520 original size:7 final size:6
Alignment explanation
Indices: 16763437--16763518 Score: 71
Period size: 6 Copynumber: 13.7 Consensus size: 6
16763427 TTTAATATTC
* * * * *
16763437 TTTTTA TCTTTA -TTTTA TTTTTA TTTTT- GTTTTA CTTTTC TTTAT-
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
16763482 TTTTTA TTTTTA TTTTTTA TTTTTA TTATTCTA TTTT
1 TTTTTA TTTTTA -TTTTTA TTTTTA TT-TT-TA TTTT
16763519 CTTTAAATAA
Statistics
Matches: 62, Mismatches: 8, Indels: 11
0.77 0.10 0.14
Matches are distributed among these distances:
5 12 0.19
6 36 0.58
7 10 0.16
8 4 0.06
ACGTcount: A:0.15, C:0.05, G:0.01, T:0.79
Consensus pattern (6 bp):
TTTTTA
Found at i:16763739 original size:59 final size:60
Alignment explanation
Indices: 16763526--16763947 Score: 463
Period size: 58 Copynumber: 7.0 Consensus size: 60
16763516 TTTCTTTAAA
16763526 TAAAAATCAAAATTTCCAAAAAAAAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAAT-AAAATTTCC-AAAAAAAATATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCT
***
16763588 TAAAAAT-AAATTT-C--AAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATAAAATTTCCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
* *
16763644 TGAAAATCAAAATTT-CAAAGAAAAA-ACTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAAT-AAAATTTCCAAA-AAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
* ** *
16763704 TAAAAAT-AAGTTT-CAAAAGAAGGTATTTTTGAGGAAAAGTTGAAAGTATCAATTTCCCT
1 TAAAAATAAAATTTCCAAAA-AAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
*
16763763 TAGAAAT-AAATTTCC-AAAAAAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATAAAATTTCCAAAAAAAATATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCT
* * * * *
16763821 TGAAAATCAAAGTTTCCAAAAAAAAAAAACATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCTT
1 TAAAAAT-AAAATTTCC----AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
* * *
16763886 TGAAAATCAAAGTTTCCAAAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1 TAAAAAT-AAAATTTCC--AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
16763948 CTACACAAGA
Statistics
Matches: 316, Mismatches: 26, Indels: 35
0.84 0.07 0.09
Matches are distributed among these distances:
56 43 0.14
57 3 0.01
58 58 0.18
59 48 0.15
60 54 0.17
61 4 0.01
62 7 0.02
63 43 0.14
65 56 0.18
ACGTcount: A:0.45, C:0.09, G:0.14, T:0.32
Consensus pattern (60 bp):
TAAAAATAAAATTTCCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:16763847 original size:65 final size:63
Alignment explanation
Indices: 16763610--16763947 Score: 432
Period size: 65 Copynumber: 5.5 Consensus size: 63
16763600 TCAAAAAGGG
* * *
16763610 TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTT-C-AAAGAAAAA-A
1 TTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCCAAAAAAAAAATA
* * * * **
16763670 CTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT--AAGTTT-C-AAAAGAAGGTA
1 TTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCCAAAAAAAAAATA
* *
16763729 TTTTTGAGGAAAAGTTGAAAGTATCAATTTCCCTT-AGAAAT-AAA-TTTCC---AAAAAAATA
1 TTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGA-AAATCAAAGTTTCCAAAAAAAAAATA
* *
16763787 TTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCCAAAAAAAAAAAACA
1 TTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCC--AAAAAAAAAATA
*
16763852 TTTTTGGGGAAAAGTTGAAAGTATCAATTTTCTTTGAAAATCAAAGTTTCCAAAAAAAAAATA
1 TTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCCAAAAAAAAAATA
16763915 TTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1 TTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
16763948 CTACACAAGA
Statistics
Matches: 246, Mismatches: 20, Indels: 21
0.86 0.07 0.07
Matches are distributed among these distances:
58 54 0.22
59 45 0.18
60 47 0.19
63 43 0.17
65 57 0.23
ACGTcount: A:0.44, C:0.09, G:0.14, T:0.33
Consensus pattern (63 bp):
TTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCCAAAAAAAAAATA
Found at i:16767862 original size:16 final size:15
Alignment explanation
Indices: 16767833--16767868 Score: 56
Period size: 16 Copynumber: 2.4 Consensus size: 15
16767823 ACAATAGATG
16767833 AAAA-ATGAGAAAAA
1 AAAAGATGAGAAAAA
16767847 AAAAGATGATGAAAAA
1 AAAAGATGA-GAAAAA
16767863 AAAAGA
1 AAAAGA
16767869 AAAAAAAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 4 0.20
15 4 0.20
16 12 0.60
ACGTcount: A:0.75, C:0.00, G:0.17, T:0.08
Consensus pattern (15 bp):
AAAAGATGAGAAAAA
Found at i:16767872 original size:10 final size:10
Alignment explanation
Indices: 16767857--16767894 Score: 58
Period size: 10 Copynumber: 3.7 Consensus size: 10
16767847 AAAAGATGAT
16767857 GAAAAAAAAA
1 GAAAAAAAAA
16767867 GAAAAAAAAA
1 GAAAAAAAAA
*
16767877 GAAAGAAAGAA
1 GAAA-AAAAAA
16767888 GAAAAAA
1 GAAAAAA
16767895 TGAAAAAAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
10 17 0.65
11 9 0.35
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (10 bp):
GAAAAAAAAA
Found at i:16767873 original size:7 final size:7
Alignment explanation
Indices: 16767861--16767904 Score: 54
Period size: 7 Copynumber: 6.1 Consensus size: 7
16767851 GATGATGAAA
16767861 AAAAAAG
1 AAAAAAG
16767868 AAAAAA-
1 AAAAAAG
16767874 AAAGAAAG
1 AAA-AAAG
*
16767882 AAAGAAG
1 AAAAAAG
16767889 AAAAAATG
1 AAAAAA-G
16767897 AAAAAAG
1 AAAAAAG
16767904 A
1 A
16767905 GATTCAAATT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
6 3 0.09
7 19 0.59
8 10 0.31
ACGTcount: A:0.82, C:0.00, G:0.16, T:0.02
Consensus pattern (7 bp):
AAAAAAG
Found at i:16767885 original size:18 final size:18
Alignment explanation
Indices: 16767861--16767904 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 18
16767851 GATGATGAAA
16767861 AAAAAAGAA-AAAAAAAG
1 AAAAAAGAAGAAAAAAAG
*
16767878 AAAGAAAGAAGAAAAAATG
1 AAA-AAAGAAGAAAAAAAG
16767897 AAAAAAGA
1 AAAAAAGA
16767905 GATTCAAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
17 3 0.12
18 11 0.46
19 10 0.42
ACGTcount: A:0.82, C:0.00, G:0.16, T:0.02
Consensus pattern (18 bp):
AAAAAAGAAGAAAAAAAG
Found at i:16767892 original size:26 final size:25
Alignment explanation
Indices: 16767840--16767906 Score: 66
Period size: 26 Copynumber: 2.6 Consensus size: 25
16767830 ATGAAAAATG
*
16767840 AGAAAAAAAAAGATGATGAAAAAAAA
1 AGAAAAAAAAAGA-GAAGAAAAAAAA
16767866 AGAAAAAAAAAGA-AAGAAAGAAGAAA
1 AGAAAAAAAAAGAGAAGAAA-AA-AAA
*
16767892 A-AATGAAAAAAGAGA
1 AGAA-AAAAAAAGAGA
16767907 TTCAAATTGA
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
24 5 0.14
25 4 0.11
26 25 0.71
27 1 0.03
ACGTcount: A:0.78, C:0.00, G:0.18, T:0.04
Consensus pattern (25 bp):
AGAAAAAAAAAGAGAAGAAAAAAAA
Found at i:16769194 original size:42 final size:41
Alignment explanation
Indices: 16769118--16769458 Score: 461
Period size: 41 Copynumber: 8.1 Consensus size: 41
16769108 ATGATTGTCA
*
16769118 AGGAGCAATTTACTTTCCAAAGTTTC-T-TTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCCAAAG--TCGTGGTGCCTCTGTTTAG
* *
16769159 AGGAGCAATTTACTTTCTCAAAGTTGTGGTGCCTCTATTTAG
1 AGGAGCAATTTACTTTC-CAAAGTCGTGGTGCCTCTGTTTAG
* *
16769201 AGGAGCAATTTACTTTCTCAAAGTCATGGTGCCTCTATTTAGAGG
1 AGGAGCAATTTACTTTC-CAAAGTCGTGGTGCCTCTGTTT--A-G
* *
16769246 AGGAGCAATTTACTTTTCCAAAGTTGTGGTGCCTCTATTTAG
1 AGGAGCAATTTAC-TTTCCAAAGTCGTGGTGCCTCTGTTTAG
*
16769288 AGGAGCAATTTACTTTCAAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAG
16769329 AGGAGCAATTTACTTTCTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTC-CAAAGTCGTGGTGCCTCTGTTTAG
* * *
16769371 AGGAGCAATTTACTTTCAAAAGTCATGGTGCCTCTGTTTAA
1 AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAG
* * *
16769412 AGGAGCAATTTATTTTCCAAAGTCGTTGAGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAG
16769453 AGGAGC
1 AGGAGC
16769459 TTTGGTAAAA
Statistics
Matches: 272, Mismatches: 20, Indels: 16
0.88 0.06 0.05
Matches are distributed among these distances:
40 1 0.00
41 122 0.45
42 109 0.40
43 1 0.00
44 1 0.00
45 34 0.12
46 4 0.01
ACGTcount: A:0.25, C:0.18, G:0.22, T:0.36
Consensus pattern (41 bp):
AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAG
Found at i:16769372 original size:83 final size:83
Alignment explanation
Indices: 16769118--16769458 Score: 474
Period size: 83 Copynumber: 4.1 Consensus size: 83
16769108 ATGATTGTCA
* *
16769118 AGGAGCAATTTACTTTCCAAAGTTTC-T-TTGCCTCTGTTTAGAGGAGCAATTTACTTTCTCAAA
1 AGGAGCAATTTACTTTCAAAAG--TCATGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCTCAAA
*
16769181 GTTGTGGTGCCTCTATTTAG
64 GTCGTGGTGCCTCTATTTAG
* *
16769201 AGGAGCAATTTACTTTCTCAAAGTCATGGTGCCTCTATTTAGAGGAGGAGCAATTTACTTT-TCC
1 AGGAGCAATTTACTTTC-AAAAGTCATGGTGCCTCTGTTT--A-GAGGAGCAATTTACTTTCT-C
*
16769265 AAAGTTGTGGTGCCTCTATTTAG
61 AAAGTCGTGGTGCCTCTATTTAG
*
16769288 AGGAGCAATTTACTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCTCAAAGT
1 AGGAGCAATTTACTTTCAAAAGTCATGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCTCAAAGT
*
16769353 CGTGGTGCCTCTGTTTAG
66 CGTGGTGCCTCTATTTAG
* *
16769371 AGGAGCAATTTACTTTCAAAAGTCATGGTGCCTCTGTTTAAAGGAGCAATTTATTTTC-CAAAGT
1 AGGAGCAATTTACTTTCAAAAGTCATGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCTCAAAGT
* * *
16769435 CGTTGAGCCTCTGTTTAG
66 CGTGGTGCCTCTATTTAG
16769453 AGGAGC
1 AGGAGC
16769459 TTTGGTAAAA
Statistics
Matches: 238, Mismatches: 12, Indels: 17
0.89 0.04 0.06
Matches are distributed among these distances:
82 30 0.13
83 112 0.47
84 17 0.07
86 21 0.09
87 58 0.24
ACGTcount: A:0.25, C:0.18, G:0.22, T:0.36
Consensus pattern (83 bp):
AGGAGCAATTTACTTTCAAAAGTCATGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCTCAAAGT
CGTGGTGCCTCTATTTAG
Found at i:16769476 original size:1 final size:1
Alignment explanation
Indices: 16769465--16769527 Score: 54
Period size: 1 Copynumber: 63.0 Consensus size: 1
16769455 GAGCTTTGGT
* * * * * * * *
16769465 AAAAAACAAAAACAAAAAAAACAAAAAAAACAACAAAAAAAACAAAAAAAACAAAACAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
16769528 TGACAATGTT
Statistics
Matches: 46, Mismatches: 16, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
1 46 1.00
ACGTcount: A:0.87, C:0.13, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:16769486 original size:9 final size:9
Alignment explanation
Indices: 16769465--16769525 Score: 72
Period size: 9 Copynumber: 6.7 Consensus size: 9
16769455 GAGCTTTGGT
16769465 AAAAAACAA
1 AAAAAACAA
16769474 AAACAAA-AA
1 AAA-AAACAA
16769483 AAACAAA-AA
1 AAA-AAACAA
*
16769492 AAACAACAA
1 AAAAAACAA
16769501 AAAAAACAA
1 AAAAAACAA
16769510 AAAAAACAA
1 AAAAAACAA
16769519 AACAAAA
1 AA-AAAA
16769526 AATGACAATG
Statistics
Matches: 47, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
8 2 0.04
9 38 0.81
10 7 0.15
ACGTcount: A:0.87, C:0.13, G:0.00, T:0.00
Consensus pattern (9 bp):
AAAAAACAA
Found at i:16769493 original size:12 final size:12
Alignment explanation
Indices: 16769465--16769527 Score: 74
Period size: 13 Copynumber: 5.1 Consensus size: 12
16769455 GAGCTTTGGT
16769465 AAAAAACAAAAA
1 AAAAAACAAAAA
*
16769477 CAAAAAA-AACAA
1 -AAAAAACAAAAA
*
16769489 AAAAAACAACAA
1 AAAAAACAAAAA
16769501 AAAAAACAAAAAA
1 AAAAAAC-AAAAA
16769514 AACAAAACAAAAA
1 AA-AAAACAAAAA
16769527 A
1 A
16769528 TGACAATGTT
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
11 6 0.13
12 16 0.36
13 18 0.40
14 5 0.11
ACGTcount: A:0.87, C:0.13, G:0.00, T:0.00
Consensus pattern (12 bp):
AAAAAACAAAAA
Found at i:16769499 original size:21 final size:21
Alignment explanation
Indices: 16769465--16769527 Score: 92
Period size: 21 Copynumber: 3.0 Consensus size: 21
16769455 GAGCTTTGGT
*
16769465 AAAAAACAAAAACAAAAAAAAC
1 AAAAAA-AACAACAAAAAAAAC
16769487 AAAAAAAACAACAAAAAAAAC
1 AAAAAAAACAACAAAAAAAAC
16769508 AAAAAAAACAA-AACAAAAAA
1 AAAAAAAACAACAA-AAAAAA
16769528 TGACAATGTT
Statistics
Matches: 39, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
20 2 0.05
21 31 0.79
22 6 0.15
ACGTcount: A:0.87, C:0.13, G:0.00, T:0.00
Consensus pattern (21 bp):
AAAAAAAACAACAAAAAAAAC
Found at i:16769533 original size:15 final size:14
Alignment explanation
Indices: 16769465--16769527 Score: 81
Period size: 14 Copynumber: 4.3 Consensus size: 14
16769455 GAGCTTTGGT
16769465 AAAAAACAAAAACAA
1 AAAAAAC-AAAACAA
*
16769480 AAAAAACAAAAAAA
1 AAAAAACAAAACAA
*
16769494 ACAACAAAAAAAACAA
1 A-AA-AAACAAAACAA
16769510 AAAAAACAAAACAA
1 AAAAAACAAAACAA
16769524 AAAA
1 AAAA
16769528 TGACAATGTT
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
14 21 0.50
15 11 0.26
16 10 0.24
ACGTcount: A:0.87, C:0.13, G:0.00, T:0.00
Consensus pattern (14 bp):
AAAAAACAAAACAA
Found at i:16769732 original size:17 final size:17
Alignment explanation
Indices: 16769690--16769732 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
16769680 ATGTTTTACC
**
16769690 TTGTATTTTTTTTTCTT
1 TTGTATTTTTCCTTCTT
* *
16769707 TTTTCTTTTTCCTTCTT
1 TTGTATTTTTCCTTCTT
16769724 TTGTATTTT
1 TTGTATTTT
16769733 ATGTATTTTA
Statistics
Matches: 20, Mismatches: 6, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.05, C:0.12, G:0.05, T:0.79
Consensus pattern (17 bp):
TTGTATTTTTCCTTCTT
Found at i:16769811 original size:31 final size:32
Alignment explanation
Indices: 16769772--16769861 Score: 87
Period size: 31 Copynumber: 2.8 Consensus size: 32
16769762 TGTATATCTT
16769772 TATTTATTTTTTTCTGTTAATATTTA-TATGTA
1 TATTTATTTTTTTCTGTTAATATTTATTAT-TA
* * *
16769804 -ATTTATTTATAT-AGTTATATATTTATTATTA
1 TATTTATTTTTTTCTGTTA-ATATTTATTATTA
*
16769835 TATTATAATTTTTTTCTGGTAATATTT
1 TATT-T-ATTTTTTTCTGTTAATATTT
16769862 TTGGATTTAT
Statistics
Matches: 45, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
30 4 0.09
31 19 0.42
32 6 0.13
33 1 0.02
34 12 0.27
35 3 0.07
ACGTcount: A:0.29, C:0.02, G:0.06, T:0.63
Consensus pattern (32 bp):
TATTTATTTTTTTCTGTTAATATTTATTATTA
Found at i:16769836 original size:20 final size:18
Alignment explanation
Indices: 16769802--16769845 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 18
16769792 TATTTATATG
16769802 TAATTTATTTATATAGTTA
1 TAATTTATTTATATA-TTA
16769821 TATATTTA-TTATTATATTA
1 TA-ATTTATTTA-TATATTA
16769840 TAATTT
1 TAATTT
16769846 TTTTCTGGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
18 4 0.17
19 10 0.43
20 9 0.39
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (18 bp):
TAATTTATTTATATATTA
Found at i:16769837 original size:14 final size:16
Alignment explanation
Indices: 16769787--16769837 Score: 56
Period size: 15 Copynumber: 3.4 Consensus size: 16
16769777 ATTTTTTTCT
16769787 GTTA-ATATTTATAT-
1 GTTATATATTTATATA
* *
16769801 GTAATTTATTTATATA
1 GTTATATATTTATATA
16769817 GTTATATATTTAT-TA
1 GTTATATATTTATATA
16769832 -TTATAT
1 GTTATAT
16769838 TATAATTTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
14 9 0.29
15 11 0.35
16 11 0.35
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.59
Consensus pattern (16 bp):
GTTATATATTTATATA
Found at i:16769925 original size:18 final size:18
Alignment explanation
Indices: 16769904--16769948 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
16769894 TGTTAATTTT
*
16769904 ATTTTATTCATTTATCTG
1 ATTTTATTCATTTATCCG
* *
16769922 ATTTTTTTTATTTATCCG
1 ATTTTATTCATTTATCCG
16769940 ATTATTATT
1 ATT-TTATT
16769949 TTTTTTTCTT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
18 18 0.82
19 4 0.18
ACGTcount: A:0.22, C:0.09, G:0.04, T:0.64
Consensus pattern (18 bp):
ATTTTATTCATTTATCCG
Found at i:16769929 original size:26 final size:25
Alignment explanation
Indices: 16769875--16769934 Score: 61
Period size: 24 Copynumber: 2.4 Consensus size: 25
16769865 GATTTATTTT
16769875 ATTTTATTTTTTAATTATCTG-TTA
1 ATTTTATTTTTTAATTATCTGTTTA
*
16769899 ATTTTATTTTATTCATTTATCTGATTT-
1 ATTTTATTTT-TT-AATTATCTG-TTTA
*
16769926 TTTTTATTT
1 ATTTTATTT
16769935 ATCCGATTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
24 10 0.33
25 2 0.07
26 8 0.27
27 8 0.27
28 2 0.07
ACGTcount: A:0.22, C:0.05, G:0.03, T:0.70
Consensus pattern (25 bp):
ATTTTATTTTTTAATTATCTGTTTA
Found at i:16770755 original size:4 final size:4
Alignment explanation
Indices: 16770748--16770821 Score: 69
Period size: 4 Copynumber: 17.8 Consensus size: 4
16770738 TTTCAGAATT
* * *
16770748 TTTA TTTA TTTA TTTGT TTTA TTTA TTTA TTTA TTTA TTAGA TTAGA TTTA
1 TTTA TTTA TTTA TTT-A TTTA TTTA TTTA TTTA TTTA TT-TA TT-TA TTTA
*
16770799 TTTA -ATA TTTA TTTA TCTTA TTT
1 TTTA TTTA TTTA TTTA T-TTA TTT
16770822 TTTTTTGTTT
Statistics
Matches: 60, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
3 2 0.03
4 43 0.72
5 15 0.25
ACGTcount: A:0.26, C:0.01, G:0.04, T:0.69
Consensus pattern (4 bp):
TTTA
Found at i:16770769 original size:17 final size:17
Alignment explanation
Indices: 16770747--16770779 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
16770737 TTTTCAGAAT
16770747 TTTTATTTATTTATTTG
1 TTTTATTTATTTATTTG
16770764 TTTTATTTATTTATTT
1 TTTTATTTATTTATTT
16770780 ATTTATTAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.18, C:0.00, G:0.03, T:0.79
Consensus pattern (17 bp):
TTTTATTTATTTATTTG
Found at i:16770780 original size:25 final size:24
Alignment explanation
Indices: 16770746--16770863 Score: 80
Period size: 25 Copynumber: 4.7 Consensus size: 24
16770736 TTTTTCAGAA
16770746 TTTTTATTTATTTATTTGTTTTAT
1 TTTTTATTTATTTATTTGTTTTAT
* **
16770770 TTATTTATTTATTTATTAGATTAGAT
1 TT-TTTATTTATTTATTTG-TTTTAT
* * *
16770796 TTATTTA-ATATTTATTTATCTTAT
1 TT-TTTATTTATTTATTTGTTTTAT
*
16770820 TTTTT-TTTGTTTTACTTT-TCTTTAT
1 TTTTTATTT-ATTTA-TTTGT-TTTAT
16770845 TTTTTATCTTTATTTATTT
1 TTTTTA--TTTATTTATTT
16770864 TCACTTTTAT
Statistics
Matches: 72, Mismatches: 13, Indels: 16
0.71 0.13 0.16
Matches are distributed among these distances:
23 4 0.06
24 12 0.17
25 35 0.49
26 14 0.19
27 4 0.06
28 3 0.04
ACGTcount: A:0.20, C:0.03, G:0.03, T:0.73
Consensus pattern (24 bp):
TTTTTATTTATTTATTTGTTTTAT
Found at i:16770878 original size:5 final size:5
Alignment explanation
Indices: 16770795--16770886 Score: 53
Period size: 5 Copynumber: 17.6 Consensus size: 5
16770785 TTAGATTAGA
* * * * * *
16770795 TTTAT TTAAT ATTTA- TTTAT CTTAT TTTTT TTTGT TTTACT TTTCT TTATTT
1 TTTAT TTTAT -TTTAT TTTAT TTTAT TTTAT TTTAT TTTA-T TTTAT TT-TAT
*
16770847 TTTAT CTTTA- TTTAT TTTCACT TTTAT TTTAT TCTAT TTT
1 TTTAT -TTTAT TTTAT TTT-A-T TTTAT TTTAT TTTAT TTT
16770887 CTTTAAATAA
Statistics
Matches: 67, Mismatches: 12, Indels: 16
0.71 0.13 0.17
Matches are distributed among these distances:
4 8 0.12
5 38 0.57
6 17 0.25
7 4 0.06
ACGTcount: A:0.17, C:0.08, G:0.01, T:0.74
Consensus pattern (5 bp):
TTTAT
Found at i:16770884 original size:22 final size:22
Alignment explanation
Indices: 16770846--16770887 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
16770836 TTTCTTTATT
16770846 TTTTATCTTTATTTATTTTCAC
1 TTTTATCTTTATTTATTTTCAC
16770868 TTTTAT-TTTATTCTATTTTC
1 TTTTATCTTTATT-TATTTTC
16770888 TTTAAATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.17, C:0.12, G:0.00, T:0.71
Consensus pattern (22 bp):
TTTTATCTTTATTTATTTTCAC
Found at i:16770968 original size:59 final size:59
Alignment explanation
Indices: 16770894--16771248 Score: 488
Period size: 59 Copynumber: 6.0 Consensus size: 59
16770884 TTTCTTTAAA
16770894 TAAAAATCAAAATTTCCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAAT-AAAATTT-CAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
*** * *
16770955 TAAAAAT-AAATTTCAAAAAGGGT-TTTTGA-GGAAAAGTTGAAAGTATCATTTTTCCT
1 TAAAAATAAAATTTCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
* *
16771011 TGAAAATCAAAATTTCCAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAAT-AAAATTTCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
* *
16771071 TAAAAATAAATTTTCAAAAAAAATATTTTTAGGGAAAAGTTGAAAATATCAATTTTCCT
1 TAAAAATAAAATTTCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
* **
16771130 TAAAAATAAATTTTCAAAAAAAAGGGTTTTT-GAGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATAAAATTTCAAAAAAAA-TATTTTTAG-GGAAAAGTTGAAAGTATCAATTTTCCT
*
16771190 TGAAAATCAAAATTTC-AAAAAAATATTTTT-GAGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAAT-AAAATTTCAAAAAAAATATTTTTAG-GGAAAAGTTGAAAGTATCAATTTTCCT
16771249 ACACAAGAAC
Statistics
Matches: 264, Mismatches: 23, Indels: 16
0.87 0.08 0.05
Matches are distributed among these distances:
56 32 0.12
57 5 0.02
58 19 0.07
59 118 0.45
60 76 0.29
61 14 0.05
ACGTcount: A:0.46, C:0.08, G:0.12, T:0.34
Consensus pattern (59 bp):
TAAAAATAAAATTTCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:16771151 original size:119 final size:118
Alignment explanation
Indices: 16770894--16771248 Score: 497
Period size: 119 Copynumber: 3.0 Consensus size: 118
16770884 TTTCTTTAAA
16770894 TAAAAATCAAAATTTCCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAA
1 TAAAAATCAAAATTT-CAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAA
*** * *
16770959 AATAAATTTCAAAAAGGGT-TTTTGA-GGAAAAGTTGAAAGTATCATTTTTCCT
65 AATAAATTTCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
* *
16771011 TGAAAATCAAAATTTCCAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAA
1 TAAAAATCAAAATTTCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAA
*
16771076 ATAAATTTTCAAAAAAAATATTTTTAGGGAAAAGTTGAAAATATCAATTTTCCT
66 ATAAA-TTTCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
* ** *
16771130 TAAAAAT-AAATTTTCAAAAAAAAGGGTTTTT-GAGGAAAAGTTGAAAGTATCAATTTTCCTTGA
1 TAAAAATCAAAATTTCAAAAAAAA-TATTTTTAG-GGAAAAGTTGAAAGTATCAATTTTCCTTAA
16771193 AAATCAAAATTTC-AAAAAAATATTTTT-GAGGAAAAGTTGAAAGTATCAATTTTCCT
64 AAAT--AAATTTCAAAAAAAATATTTTTAG-GGAAAAGTTGAAAGTATCAATTTTCCT
16771249 ACACAAGAAC
Statistics
Matches: 215, Mismatches: 15, Indels: 14
0.88 0.06 0.06
Matches are distributed among these distances:
116 54 0.25
117 24 0.11
118 21 0.10
119 109 0.51
120 4 0.02
121 3 0.01
ACGTcount: A:0.46, C:0.08, G:0.12, T:0.34
Consensus pattern (118 bp):
TAAAAATCAAAATTTCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAA
ATAAATTTCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:16773041 original size:26 final size:26
Alignment explanation
Indices: 16773011--16773063 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16773001 GTTGACTTAG
16773011 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCATTCCCAGTATAA
*
16773037 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTATAA
16773063 G
1 G
16773064 ATCTGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTATAA
Found at i:16773903 original size:26 final size:26
Alignment explanation
Indices: 16773867--16773919 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16773857 GTTGACTTAG
16773867 GCATACGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
* *
16773893 GCATACGGAGTTCATTGCCAGTTTAA
1 GCATACGGAGTTCATTACCAGTCTAA
16773919 G
1 G
16773920 ATTGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTACCAGTCTAA
Found at i:16774790 original size:26 final size:26
Alignment explanation
Indices: 16774760--16774812 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16774750 GTTGACTTAG
*
16774760 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
16774786 GCATACGAAGTTCATTCGCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16774812 G
1 G
16774813 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16776132 original size:901 final size:890
Alignment explanation
Indices: 16772141--16776402 Score: 5147
Period size: 901 Copynumber: 4.8 Consensus size: 890
16772131 GTTGACTTAG
* * ** * * * *
16772141 GCATACGGAGTTCATTCCCAGTCTAAGACCGGACTGGACTGAGGGTTGTGGTAGCACATGCTGGG
1 GCATACGAAGTTCATTGCCAGTCTAAGATTGGACTAGACCGAGGGTTGCGGCAGCACATGCTGGG
** * * ***
16772206 CTCGGGCATGTGCTGGTGTTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATTGCCGGAGA
66 CTCGGGCATGTGCTGGTG-CCCATTTTTCTTTGTCGGGGCACCATCGCCGGAGCATCATCGGAGA
* * * ** *
16772271 ACCTGACCGACGGCATTTGGGTTCCGACGATCGGGGGCCTGGGGGGTGTGCACACATGATGTGCG
130 ACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGG-GTGGGGGGTGTGTGCACATGATGTACG
* *
16772336 ATGGGTGCTGGTACTTGGCCCTTATATT-GGCCCCGTATCCCTCATCAAACCTCGAGAACTCACA
194 ATGGGTGCTGGCACTTGGCCCTTATATTGGGCCCC-TATCCCTCATCAAACCTCAAGAACTCACA
* * * *
16772400 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCTATTAAAGTGTCTGAAATG
258 CCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGCAATG
* * * *
16772465 GGGACACTTTTTTGAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTAAATTTTTTTAT
* * * * *
16772530 GCAAGCGAAAAAAAAAATACAAGGATCACGTTTACCAAGTTTGGGGCCAAAACACCTTTCGAAAA
388 GCATGC--CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-CC-TTCTAAAA
* ***
16772595 AATTTTAAAAAATC-CTGAACCGT-AAAAATTTTCAAAAATCAAGAAAAATAGAAAACGAGTCGT
449 AATTTTAAAAAATCTC-GAACC-TCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGT
* *
16772658 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
512 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAATC
* * * *
16772723 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCGCCCTATCGATCCACGGCTT
577 ACATTGGCACGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * * * * *
16772788 GCGCATCCCGTCTCTTTAGCCGACGTAATGCCCGCCTGCCTGCTCGTTTCATCGGTTGGCTTAGG
642 GCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGG
* * * * * **
16772853 CATACGGAGTTTATTCCCAGTCTAAGATTAG-ACCGAACCAAGGGTT--GTAGCAACAAGATCGA
707 CATACAGAGTTCATTCCCAATCTAAGATCAGTACC-AGCTGAGGGTTACG-A-CAACAAGATCGA
* * * * *
16772915 CAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTTTGGCCGGCTGAGC
769 CAGCACACAGAAGGGGAACCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAAC
* *
16772980 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTATAA
834 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
16773037 GCATACGGAGTTCATTCCCAGTCTAAGATCT-GACCAGACCGAGGGTTGCGGCAGTAGATGTTGG
1 GCATACGAAGTTCATTGCCAGTCTAAGAT-TGGACTAGACCGAGGGTTGCGGCAGCACATGCTGG
* * * ** *
16773101 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTTGCCGGGGCACCATCGTCGGAGCATCGCCAGAG
65 GCTCGGGCATGTGCTGGTGCC-CATTTTTCTTTGTCGGGGCACCATCGCCGGAGCATCATCGGAG
** * * ** *
16773166 AACCTGACCGGTGGCATTAGGG-TTCTGACGATTGGGGGCCCGAGGGGGTGTGCGCACATGATGT
129 AACCTGACCGACGGCATTGGGGTTTC-GACGATCGGGGG-GTG-GGGGGTGTGTGCACATGATGT
* * * *
16773230 GCG-TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
191 ACGATGGGTGCTGGCACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCAAGAACTCA
* * * *
16773294 CACCCCTTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
256 CACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGCAA
* * * *
16773359 TGGGGACACTTTTTTCAAATGCTCACAAAATCTTGTACACTTCGTGTTTTTAGCTGAATTTTTTT
321 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTAAATTTTTTT
* * * * * *
16773424 ATGCATGCCAACAAAAGTACAAGGATCACGTCTACCAGGTTTGGGACGAAAACTCTTTCGAAAAA
386 ATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-CCTTCTAAAAA
* *
16773489 ATTTTAAAAAATCTCGAACCGT-AAAAAGTTTCAAAAATCT-TAAAAAATATAAAACGAGTCGTC
450 ATTTTAAAAAATCTCGAACC-TCAAAAAGTTTCAAAAAT-TGTGAAAAATAGAAAACGAGTCGTC
* * ** **
16773552 TTGCCATGAAACGTCACGTGAACGCTTAAGGGACCATTGTATGAATTAACAAGCCATAAAAAAGG
513 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCAT-AAAAATC
* * *
16773617 A-ATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTT
577 ACATTGGCACGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
16773681 GTGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCAGCCCGCCCACCCGTTCGTTTTGTCGGTT
642 GCGCATCCCGTCTCTCTGGTCGGCGTAGTG--C-CC-GCCCG----CCCGCTCGTTTCGTCAGTT
** ** * * ** * *
16773746 GGCTTAGGCGCATGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTACGGTAGCAG
699 GGCTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGTACCAG-CTGAGGGTTACGACAACAA
* * * * * ** * *
16773810 GATTGACAGCACACAGAGGGGGACCCGACCAATCCCTGGCTT-CG--T---G--GGT-TGACTTA
763 GATCGACAGCACACAGAAGGGGAACCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC--C
* * * ** *
16773866 GGC--ATACG---G-A-GTTCATTAC--CAG-T--C-TAAGCATACGGAG----TT--CA-T-T-
826 GGCTGA-ACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
16773909 -
890 A
* * * * *
16773909 GC---C--AG-T--TT--AAG---A---TTGGAC-CGACAGAGGGTTGCGACAGCACATGCTAGG
1 GCATACGAAGTTCATTGCCAGTCTAAGATTGGACTAGACCGAGGGTTGCGGCAGCACATGCTGGG
16773957 CTCGGGCATGTGCTGGTGCCCATTTTTCTTTGTCGGGGCACCATCGCCGGAGCATCATCGGAGAA
66 CTCGGGCATGTGCTGGTGCCCATTTTTCTTTGTCGGGGCACCATCGCCGGAGCATCATCGGAGAA
* *
16774022 CCTGACCGATGGCATTGGGGTTTTGACGATCGGGGCGGTGGGGGGGTGTGTGCACATGATGTACG
131 CCTGACCGACGGCATTGGGGTTTCGACGATCGGGG-GGT-GGGGGGTGTGTGCACATGATGTACG
16774087 ATGGGTGCTGGCACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
194 ATGGGTGCTGGCACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
* * *
16774152 CCCCTTAAAAAGCATTTGAGATTTTACAAGTTTGCTGCCAATAGTCATTAAAGTGTCTGCAATGG
259 CCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGCAATGG
*
16774217 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTAAATTTTTTTTTG
324 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTAAATTTTTTTATG
*
16774282 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAATT
389 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-CCTTCTAAAAAATT
16774347 TTAAAAAATCTCGAACCGT-AAAAAGTTTCAAAAATTGTGAAAAATAGAAAAACGAGTCGTCTTG
453 TTAAAAAATCTCGAACC-TCAAAAAGTTTCAAAAATTGTGAAAAATAG-AAAACGAGTCGTCTTG
*
16774411 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAATCATAT
516 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAATCACAT
*
16774476 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
581 TGGCACGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *
16774541 ATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
646 ATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATA
* ** * * * *
16774606 CAGAGTTCATTCCCAATCTAAGATCGGTATGAGCTGAGGGTTGCGGCAACAAGATTGACAGCACG
711 CAGAGTTCATTCCCAATCTAAGATCAGTACCAGCTGAGGGTTACGACAACAAGATCGACAGCACA
* * * *
16774671 CAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGCTGGCTGAGCGCCCGCA
776 CAGAAGGGGAACCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAACGCCCGCA
*
16774736 CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
841 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
16774786 GCATACGAAGTTCATT-CGCAGTCTAAGATCGGA-TCAGACCAAGGGTTGTGGCAGCACATGCTG
1 GCATACGAAGTTCATTGC-CAGTCTAAGATTGGACT-AGACCGAGGGTTGCGGCAGCACATGCTG
* * * **
16774849 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCGTCGGAGCATCGCCGGA
64 GGCTCGGGCATGTGCTGGTGCC-CATTTTTCTTTGTCGGGGCACCATCGCCGGAGCATCATCGGA
* * * * * **
16774914 GAACCTGATCGGCGGCATTGGGTTTTCGACGATC-------GGGGGGTGTGCGCGCATGATGTGG
128 GAACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGTGGGGGGTGTGTGCACATGATGTAC
* * * * *
16774972 GATGGATGCTGGTACTTGGCCCTTGTATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
193 GATGGGTGCTGGCACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCAAGAACTCACA
* * *
16775037 CCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
258 CCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGCAATG
* *
16775102 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGTGTTTTTAGCTGAATTTTTTTAT
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTAAATTTTTTTAT
* * *
16775167 GCATGCCAACAAAAGTACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACCCTTTCGAAAAAAT
388 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCC-TTCTAAAAAAT
** *
16775232 TTTAAAAAATCTCGAACCTCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGC
452 TTTAAAAAATCTCGAACCTCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGC
* * * **
16775297 CACGAAACTTCACGTGAGGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGA-AT
517 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCAT-AAAAATCACAT
* *
16775361 TGGCATGAAGAAATATGTAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
581 TGGCACGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *
16775426 ATCCCGTCTCTCTGGTCGGCGTAGTGCCCTCTGGCCCGCCCACCTGTTCGTTTTGTCAGTTGGCT
646 ATCCCGTCTCTCTGGTCGGCGTAGTG-CC-C--GCCCG--C-CC-GCTCGTTTCGTCAGTTGGCT
* * * * *
16775491 TAGGCATACGGAGTTCATTCCTAGTCTAAGATCAG-ACCAGACTGAGGGTTACGATAGCAAGATC
703 TAGGCATACAGAGTTCATTCCCAATCTAAGATCAGTACCAG-CTGAGGGTTACGACAACAAGATC
* * * * * *
16775555 GGCAGCACACAGAGGGGGAACCGGCC-AGTCCCTGGTTTGCGCATCCCGCCCTTCTGGCCGGCTG
767 GACAGCACACAGAAGGGGAACCGACCGA-TCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* *
16775619 AACGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCCAGTCTAA
831 AACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
16775679 GCATACGAAGTTCATTGCCGGTCTAAGATTGGACTAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGAAGTTCATTGCCAGTCTAAGATTGGACTAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
16775744 CTCGAGCATGTGCTGGTGCCCATTTTTCTTTGCCGGGGCACCATCGCCGGAGCATCATCGGAGAA
66 CTCGGGCATGTGCTGGTGCCCATTTTTCTTTGTCGGGGCACCATCGCCGGAGCATCATCGGAGAA
16775809 CCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGGTGGGGGTGTGTGTGCACATGATGTACG
131 CCTGACCGACGGCATTGGGGTTTCGACGATC-GGGGGGTGGGGG-GTGTGTGCACATGATGTACG
*
16775874 ATGGGTGCTGGCACTTGGCCCTTATATTGGGCCCCTATCCCTCATCGAACCTCAAGAACTCACAC
194 ATGGGTGCTGGCACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
*
16775939 CCCCTTAAAAAGCATTTGAGATTTTACCGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGCAATGG
259 CCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGCAATGG
* ** * *
16776004 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCAAGTTTTTAACTAAATTTTTTTCTG
324 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTAAATTTTTTTATG
* *
16776069 CATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACGCCTTCTAAAAAATT
389 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-CCTTCTAAAAAATT
*
16776134 TTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCC
453 TTAAAAAATCTCGAACCTCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCC
*
16776199 ATGAAACTTCACGTGAAGGCTTGAGGGACCATTGTATGAATTTGCAAGCCATAAAAATCACATTG
518 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAATCACATTG
* * *
16776264 GCACGTAA-AAATATGAAGATGTGCCTAAACCCACTTACCACCCTGTCGATCCTCGGCTTGCGCA
583 GCACG-AAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * * * * ** *
16776328 ACCCGCCCCTCTGGCCGGC-T-GAG--CGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
647 TCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATAC
*
16776389 GGAGTTCATTCCCA
712 AGAGTTCATTCCCA
16776403 GTATAAGCAT
Statistics
Matches: 2933, Mismatches: 324, Indels: 225
0.84 0.09 0.06
Matches are distributed among these distances:
848 102 0.03
849 5 0.00
851 1 0.00
852 5 0.00
853 2 0.00
854 93 0.03
855 336 0.11
856 163 0.06
857 4 0.00
859 2 0.00
860 1 0.00
861 6 0.00
862 2 0.00
863 1 0.00
864 3 0.00
866 2 0.00
867 14 0.00
869 1 0.00
871 2 0.00
872 2 0.00
873 2 0.00
874 2 0.00
875 2 0.00
876 2 0.00
877 2 0.00
878 2 0.00
880 1 0.00
882 14 0.00
883 2 0.00
885 161 0.05
886 312 0.11
887 3 0.00
888 6 0.00
889 43 0.01
890 3 0.00
891 2 0.00
892 77 0.03
893 465 0.16
894 95 0.03
895 70 0.02
896 328 0.11
897 32 0.01
898 1 0.00
899 2 0.00
900 15 0.01
901 537 0.18
902 4 0.00
903 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (890 bp):
GCATACGAAGTTCATTGCCAGTCTAAGATTGGACTAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCCATTTTTCTTTGTCGGGGCACCATCGCCGGAGCATCATCGGAGAA
CCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGTGGGGGGTGTGTGCACATGATGTACGAT
GGGTGCTGGCACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCAAGAACTCACACCC
CCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGCAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTAAATTTTTTTATGCA
TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCTTCTAAAAAATTTTA
AAAAATCTCGAACCTCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAATCACATTGGCA
CGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
GTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACAGAG
TTCATTCCCAATCTAAGATCAGTACCAGCTGAGGGTTACGACAACAAGATCGACAGCACACAGAA
GGGGAACCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAACGCCCGCACGCTC
GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:16776420 original size:26 final size:26
Alignment explanation
Indices: 16776383--16776435 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16776373 GTTGACTTAG
*
16776383 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACGAAGTTCATTCCCAGTATAA
*
16776409 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTATAA
16776435 G
1 G
16776436 ATCGAACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTATAA
Found at i:16776998 original size:733 final size:730
Alignment explanation
Indices: 16775591--16777825 Score: 2218
Period size: 733 Copynumber: 3.0 Consensus size: 730
16775581 AGTCCCTGGT
* *
16775591 TTGCGCATCCCGCCCTTCTGGCCGGCTGAACGC-CTGCACGCTCGTTTCGTGGGTTGACTTAGGC
1 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCTC-GCACGCTCGTTTCGTGGGTTGACTTAGGC
* * * * * * *
16775655 ATAGGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTGCCGGTCTAAGATTGGACTAGACCG
65 ATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGAACCAAACCG
* * ** *
16775720 AGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCCATTTTTCTTTGCCGGGGCAC
130 AGGGTTGCGGCAGCACAGGCAGGGCTCGAGCAAATGCTGGTGCCCATTTTTCTTTGCCGAGGCAC
* * *
16775785 CATCGCCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGGTGG
195 CATCGCCGGAGCATCACCGGAGAACCTGACCGACAGCATTGGGGTTTCGACGATCGGGGGGGCGG
* * * *
16775850 GGGTGTGTGTGCACATGATGTACGATGGGTGCTGGCACTTGGCCCTTATATTGGGCCCCTATCCC
260 GGGTGTGTGCGCACATGATGTACAATGGGTGCTGGAACATGGCCCTTATATTGGGCCCCTATCCC
* *
16775915 TCATCGAACCTCAAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACCGGTTTGCTGCCAG
325 TCATCAAACCTCAAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* *
16775980 TAGCCATTAAAGTGTCTGCAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCA
390 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTGTACACATCA
*
16776045 AGTTTTTAACTAAATTTTTTTCTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGG
455 AGTTTTTAACTAAATTTTTTTCTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * * * * *
16776110 GGCCAAAACGCCTTCTAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATTGTGAA
520 GGCCAAAAAGCCTCCGAAAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCGTGAA
* *
16776175 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTGAGGGACCATTGTATGAAT
585 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAAT
* * *
16776240 TTGCAAGCCATAAAAATCACATTGGCACGTAAAAATATGAAGATGTGCCTAAACCCACTTACCAC
650 TTACAAGCCATAAAAATCACATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCAC
* *
16776305 CCTGTCGATCCTCGGC
715 CCTATCGATCCACGGC
*
16776321 TTGCGCAACCCGCCCCTCTGGCCGGCTGAGCGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
1 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* *
16776386 TACGGAGTTCATTCCCAGTATAAGCATACGAAGTTCATTCCCAGTCTAAGATCGAACCAAATCGA
66 TACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGAACCAAACCGA
* *
16776451 GGGTTGTGGCAGCACAGGCAGGGCTCTG-GCAAATGCTGGTGCCATATTTTTC-TT-CCTTGAGG
131 GGGTTGCGGCAGCACAGGCAGGGCTC-GAGCAAATGCTGGTGCC-CATTTTTCTTTGCC--GAGG
* ** *
16776513 CACCATCGTCGGAGCATTGCCGGAGAACCTGACTGACAGCATTGGGGTTTCGACGATCGGGGGGG
192 CACCATCGCCGGAGCATCACCGGAGAACCTGACCGACAGCATTGGGGTTTCGACGATCGGGGGGG
* * *
16776578 CCGGGGGTGGTGTGCGCACATGATGTGCAATGGGTGCTGGAACATGGCCCTTATATTGGTCCCGT
257 -CGGGGGT-GTGTGCGCACATGATGTACAATGGGTGCTGGAACATGGCCCTTATATTGGGCCCCT
** *
16776643 ATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
320 ATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCT
* *
16776708 GCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAACGGTCCCAAAATCTTGTACA
385 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTGTACA
* * * * * * *
16776773 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGTATTACGTCTA-CAAT
450 CATCAAGTTTTTAACTAAATTTTTTTCTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA-
* *
16776837 GTTTGGGGCCAAAAATCCTGCCGAAAAAATTTTAACAAATCCCAAACCACAAAAAGTTTCAAAAA
514 GTTTGGGGCCAAAAAGCCT-CCGAAAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAA
16776902 TCGTG-AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTC
578 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTC
** * *
16776966 TATGAATTTACAAGCCATTAAAAA-GGCATTGGCATGCAAAAATATGAAGATGTGCCTAATCCCA
643 TATGAATTTACAAGCCA-TAAAAATCACATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCA
16777030 CCTACCACCCTATCGATCCACGGC
707 CCTACCACCCTATCGATCCACGGC
** * * *
16777054 TTGCGCATCCCATCTCTCTAGCCGG-TGTAGTGCCCGCCCTCCCGTC-CGCTCGTTTCGTCGGTT
1 TTGCGCATCCCGCCCCTCTGGCCGGCTG-A--G--CG--CT--CG-CACGCTCGTTTCGTGGGTT
* * **
16777117 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGAA--TCAAGGGTTGCGGAAG-C
56 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAG--CATA-CGAAGTTC-A---TT-C-CCAGTC
* * * ** * * ** ***
16777179 -AAGATCGGCAGCACGTAAAGGGGGACCCGATCGATCCCCGGCCTGCGCATCCCACCCCTCTG-G
112 TAAGATC-G-A--AC--CAA-----A-CCGA-GGGT-TGCGG-CAGCACA-GGCAGGGCTC-GAG
** * ** * * **** *** ** ** *
16777242 CCGA--CTGAGCGCCCGCA-TCCTCTTT-TCGTGGGTTGAT--TTAG-GCAT-A-CAAAGTTCAT
160 CAAATGCTG-GTG-CC-CATTTTTCTTTGCCGAGGCACCATCGCCGGAGCATCACCGGAGAACCT
** * * *** * *
16777298 TCCCAGTCTAAGCATATGGAG--TC--C-ATTC--CCAGTC--GGGT-T-TGCGCACATGATGTG
222 GACC-GAC--AGCAT-TGGGGTTTCGACGA-TCGGGGGGGCGGGGGTGTGTGCGCACATGATGTA
* * * *
16777352 CGATGGGTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
282 CAATGGGTGCTGGAACATGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* **
16777417 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGTTATTAAAGTGTCTGAAAT
347 ACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * * * ** * *
16777482 GGAGACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTCGAGTTTTTTGCTGAATTTTTTTG
412 GGGGACACTTTTTTCAAACGGTCACAAAATCTTGTACACATCAAGTTTTTAACTAAATTTTTTTC
* * * * * ** * *
16777547 TGTATGCCAACAAAAATACAAGGATCACGGCTACAAATTTTGGGGCCAAAACTCCTTTCAAAAAA
477 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAGCC-TCCGAAAAA
* * ** * * ** *
16777612 ATTTTAAAAAATCTCGAACCACAAAAAGTTTTGAAAATCATTAAAAATAGAAAATAAGTCATCTT
541 ATTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * * * **
16777677 CCCATGAAACTTCACGTGAAGGCTTAAGGGACGATTGTATGAATTTAGAAGCCATAAAAATGGCA
606 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATAAAAATCACA
* * ** *
16777742 TTGGCACGTAGAAATATGAAGATGTG-CTGAAACGTACCTACCACCCTATCAATCCACGGC
671 TTGGCACGCAAAAATATGAAGATGTGCCT-AAACCCACCTACCACCCTATCGATCCACGGC
* * *
16777802 TTTCGCATCCCGTCTCTCTGGCCG
1 TTGCGCATCCCGCCCCTCTGGCCG
16777826 ACGTACTGCC
Statistics
Matches: 1275, Mismatches: 172, Indels: 98
0.83 0.11 0.06
Matches are distributed among these distances:
729 2 0.00
730 154 0.12
731 71 0.06
732 11 0.01
733 389 0.31
734 49 0.04
735 1 0.00
737 2 0.00
739 2 0.00
741 50 0.04
742 3 0.00
743 4 0.00
744 4 0.00
746 8 0.01
747 293 0.23
748 151 0.12
750 6 0.00
752 3 0.00
753 1 0.00
754 1 0.00
755 9 0.01
756 2 0.00
757 7 0.01
758 10 0.01
759 6 0.00
760 10 0.01
761 10 0.01
762 16 0.01
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.26
Consensus pattern (730 bp):
TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
TACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGAACCAAACCGA
GGGTTGCGGCAGCACAGGCAGGGCTCGAGCAAATGCTGGTGCCCATTTTTCTTTGCCGAGGCACC
ATCGCCGGAGCATCACCGGAGAACCTGACCGACAGCATTGGGGTTTCGACGATCGGGGGGGCGGG
GGTGTGTGCGCACATGATGTACAATGGGTGCTGGAACATGGCCCTTATATTGGGCCCCTATCCCT
CATCAAACCTCAAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTGTACACATCAA
GTTTTTAACTAAATTTTTTTCTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGG
GCCAAAAAGCCTCCGAAAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCGTGAAA
AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATT
TACAAGCCATAAAAATCACATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACC
CTATCGATCCACGGC
Found at i:16777531 original size:747 final size:750
Alignment explanation
Indices: 16776590--16778080 Score: 2161
Period size: 747 Copynumber: 2.0 Consensus size: 750
16776580 GGGGGTGGTG
* *
16776590 TGCGCACATGATGTGCAATGGGTGCTGGAACATGGCCCTTATATTGGTCCCGTATCCCTCATCAA
1 TGCGCACATGATGTGCAATGGGTGCTGGAACATGGCCCTTATATTGGCCCCCTATCCCTCATCAA
*
16776655 ACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
66 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* * * *
16776720 TAAAGTGTTTGAAATGGGGACACTTTTTTCAAACGGTCCCAAAATCTTGTACACTTCGAGTTTTT
131 TAAAGTGTCTGAAATGGAGACACTTTTTTCAAACGGTCACAAAATCTTGTAAACTTCGAGTTTTT
* * *
16776785 AGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGTATTACGTCTAC-AATGTTTGGGGCCAA
196 AGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGGCTACAAAT-TTTGGGGCCAA
* * *
16776849 AAATCCTGCCGAAAAAATTTTAACAAATCCCAAACCACAAAAAGTTTCAAAAATC-GTGAAAATA
260 AAATCCTGCCAAAAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCAGTAAAAATA
* * *
16776913 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACA
325 GAAAACAAGTCATCTTCCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACA
* *
16776978 AGCCATTAAAAA-GGCATTGGCATGCAAAAATATGAAGATGTGCCT-AATCCCACCTACCACCCT
390 AGCCA-TAAAAATGGCATTGGCACGCAAAAATATGAAGATGTG-CTGAAACCCACCTACCACCCT
* ** * * *
16777041 ATCGATCCACGGCTTGCGCATCCCATCTCTCTAGCCGGTGTA-G-TGCCCGCCCTCCCGTCCGCT
453 ATCAATCCACGGCTTGCGCATCCCATCTCTCTAGCCGACGTACGCCGCCCGCCCGCCCGCCCGCT
*
16777104 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACC-GAATCAAGG
518 CGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAG-ATCAAGG
* * * *
16777168 GTTGCGGAAGCAAGATCGGCAGCACGTAAAGGGGGACCCGATCGATCCCCGGCCTGCGCATCCCA
582 GTTGCGGAAGCAAGATCAGCAACACGCAAAGGGGGACCCGATCGATCCACGGCCTGCGCATCCCA
* * * *
16777233 CCCCTCTGGCCGACTGAGCGCCCGCATC-CTCTTTTCGTGGGTTGATTTAGGCATACAAAGTTCA
647 CCCCTCCGGCCGACTGAGCGCCCGCA-CGCTCGTTTCATGGGTTGACTTAGGCATACAAAGTTCA
* *
16777297 TTCCCAGTCTAAGCATATGGAGTCCATTCCCAGTCGGGTT
711 TTCCCAATCTAAGCATACGGAGTCCATTCCCAGTCGGGTT
* *
16777337 TGCGCACATGATGTGCGATGGGTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
1 TGCGCACATGATGTGCAATGGGTGCTGGAACATGGCCCTTATATTGGCCCCCTATCCCTCATCAA
**
16777402 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGTTAT
66 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
*
16777467 TAAAGTGTCTGAAATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTCGAGTTTTT
131 TAAAGTGTCTGAAATGGAGACACTTTTTTCAAACGGTCACAAAATCTTGTAAACTTCGAGTTTTT
* * *
16777532 TGCTGAATTTTTTTGTGTATGCCAACAAAAATACAAGGATCACGGCTACAAATTTTGGGGCCAAA
196 AGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGGCTACAAATTTTGGGGCCAAA
* ** * * ** *
16777597 ACTCCTTTCAAAAAAATTTTAAAAAATCTCGAACCACAAAAAGTTTTGAAAATCATTAAAAATAG
261 AATCCTGCCAAAAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCAGTAAAAATAG
* * * *
16777662 AAAATAAGTCATCTTCCCATGAAACTTCACGTGAAGGCTTAAGGGACGATTGTATGAATTTAGAA
326 AAAACAAGTCATCTTCCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAA
* * **
16777727 GCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCTGAAACGTACCTACCACCCTATC
391 GCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTGCTGAAACCCACCTACCACCCTATC
* * * *
16777792 AATCCACGGCTTTCGCATCCCGTCTCTCTGGCCGACGTACTGCCCGCCCGCCCGCCCGCCCGCTT
456 AATCCACGGCTTGCGCATCCCATCTCTCTAGCCGACGTAC-G-CCGCCCGCCCGCCCGCCCGCTC
* * * *
16777857 GTTTCGTCGGTTGACTTAGGCATTCGGAGTTCATTCCCATTCTAAGATCAGACCAGATCAAGTGT
519 GTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGATCAAGGGT
* * * * *
16777922 TGCGGTAGCAGGATCAGCAACACGCAGAGGGGGACCCGATCGATCCACGGCTTGCGCATCCCGCC
584 TGCGGAAGCAAGATCAGCAACACGCAAAGGGGGACCCGATCGATCCACGGCCTGCGCATCCCACC
* * ***
16777987 CCTCCGGCCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTC
649 CCTCCGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAAAGTTCATTC
*
16778052 CCAATCTAAGCATACGGAGTTCATTCCCA
714 CCAATCTAAGCATACGGAGTCCATTCCCA
16778081 TTCTAAGATC
Statistics
Matches: 656, Mismatches: 78, Indels: 15
0.88 0.10 0.02
Matches are distributed among these distances:
747 291 0.44
748 151 0.23
750 1 0.00
751 1 0.00
752 211 0.32
753 1 0.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (750 bp):
TGCGCACATGATGTGCAATGGGTGCTGGAACATGGCCCTTATATTGGCCCCCTATCCCTCATCAA
ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
TAAAGTGTCTGAAATGGAGACACTTTTTTCAAACGGTCACAAAATCTTGTAAACTTCGAGTTTTT
AGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGGCTACAAATTTTGGGGCCAAA
AATCCTGCCAAAAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCAGTAAAAATAG
AAAACAAGTCATCTTCCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAA
GCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTGCTGAAACCCACCTACCACCCTATC
AATCCACGGCTTGCGCATCCCATCTCTCTAGCCGACGTACGCCGCCCGCCCGCCCGCCCGCTCGT
TTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGATCAAGGGTTG
CGGAAGCAAGATCAGCAACACGCAAAGGGGGACCCGATCGATCCACGGCCTGCGCATCCCACCCC
TCCGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAAAGTTCATTCCC
AATCTAAGCATACGGAGTCCATTCCCAGTCGGGTT
Found at i:16778065 original size:26 final size:26
Alignment explanation
Indices: 16778035--16778087 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16778025 GTTGACTTAG
*
16778035 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
16778061 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
16778087 G
1 G
16778088 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:16779085 original size:904 final size:903
Alignment explanation
Indices: 16777337--16779100 Score: 2626
Period size: 904 Copynumber: 2.0 Consensus size: 903
16777327 CAGTCGGGTT
* *
16777337 TGCGCACATGATGTGCGATGGGTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
1 TGCGCACATGATGTGCGATGGCTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCCCATCAA
* **
16777402 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGTTAT
66 ACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
16777467 TAAAGTGTCTGAAATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTCGAGTTTTT
131 TAAAGTGTCTGAAATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTCGAGTTTTT
* * *
16777532 TGCTGAATTTTTTTGTGTATGCCAACAAAAATACAAGGATCACGGCTACAAATTTTGGGGCCAAA
196 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGGCTACAAAGTTTGGGGCCAAA
* * * ** *
16777597 ACTCCTTTCAAAAAAATTTTAAAAAATCTCGAACCACAAAAAGTTTTGAAAATCATTAAAAATAG
261 ACACCTTCCAAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAG
* *
16777662 AAAATAAGTCATCTTCCCATGAAACTTCACGTGAAGGCTTAAGGGACGATTGTATGAATTTAGAA
326 AAAATAAGTCATCTTCCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* * * **
16777727 GCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCTGAAACGTACCTACCACCCTATC
391 GCCATAAAAATGGCATTGGCACGCAAAAATATAAAGATGTGCTGAAACCCACCTACCACCCTATC
* * * * * *
16777792 AATCCACGGCTTTCGCATCCCGTCTCTCTGGCCGACGTACTGCCCGCCCGCCCGCCCGCCCGCTT
456 AATCCACAGCTTGCGCATCCCGTCTCTCTGACCGACATACTGCCCGCCCACCCGCCCG-CCACTT
* * * * * *
16777857 GTTTCGTCGGTTGACTTAGGCATTCGGAGTTCATTCCCATTCTAAGATCAGACCAGATCAAGTGT
520 GTTTCATCGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAAGATCAGACCAGACCAAGGGT
16777922 TGCGGTAGCAGGATCAGCAACACGCAGAGGGGGACCCGATCGATCCACGGCTTGCGCATCCCGCC
585 TGCGGTAGCAGGATCAGCAACACGCAGAGGGGGACCCGATCGATCCACGGCTTGCGCATCCCGCC
*
16777987 CCTCCGGCCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTC
650 CCTCCGGCCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGACCTAGGCATATGGAGTTCATTC
* * *
16778052 CCAATCTAAGCATACGGAGTTCATTCCCATTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCA
715 CCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCA
* *
16778117 CATGCTGGGCTCAGGCATGTGCTGGTGCCTCATTTTTCTTCGCTGGGCCACCATCGCTGGAGCAT
780 CATGCTGGGCTCAGGAATGTGCTGGTGCCACATTTTTCTTCGCTGGGCCACCATCGCTGGAGCAT
16778182 CGCCGGAGAACCTGACCGACGGCATTGAGGTTCCGACTATCGGGGGGGCCAGGGCGGTG
845 CGCCGGAGAACCTGACCGACGGCATTGAGGTTCCGACTATCGGGGGGGCCAGGGCGGTG
* * * *
16778241 TGCGCACAT-ATGTGTGATGGCTTCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCCCATCAA
1 TGCGCACATGATGTGCGATGGCTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCCCATCAA
* *
16778305 ACCTCAAGAACTCACACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCAT
66 ACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* * *
16778370 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTGGAGTTTTT
131 TAAAGTGTCTGAAATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTCGAGTTTTT
* * *
16778435 AGCTGAATTTTTTTGTGCATGCCAATAAAAAGTACAAGGATCACGTCTACCAAGTTTGGGGCCAA
196 AGCTGAATTTTTTTGTGCATGCCAACAAAAA-TACAAGGATCACGGCTACAAAGTTTGGGGCCAA
* * *
16778500 AACACCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAATAAGTTTCAAAAATCATGAAAAATA
260 AACACCTTCCAAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATA
* * *
16778565 GAAAACT-TGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
325 GAAAA-TAAGTCATCTTCCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
16778629 AAGCCATAAAAATGGCATTGGCACGCAAAAATATAAAGATGTGCCT-AAACCCACCTACCACCCT
389 AAGCCATAAAAATGGCATTGGCACGCAAAAATATAAAGATGTG-CTGAAACCCACCTACCACCCT
* * * * * *
16778693 ATCGATCCACAGCTTGCGCATCCTGTCTCTCTGACCGGCATAGTGCCCGTCCACCCGCTCG-CAC
453 ATCAATCCACAGCTTGCGCATCCCGTCTCTCTGACCGACATACTGCCCGCCCACCCGCCCGCCAC
* **
16778757 -T-TTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAATCTAAGATCAGACTGGACCAAGG
518 TTGTTTCATCGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAAGATCAGACCAGACCAAGG
* * * * * * *
16778820 GTTGCGGTAGTAGGATCGGCAGCATGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGTATCCCG
583 GTTGCGGTAGCAGGATCAGCAACACGCAGAGGGGGACCCGATCGATCCACGGCTTGCGCATCCCG
** * *
16778885 CCCCTTTGGCCGGCTAAGCGCCTGCCCGCACGCTCGTTTCGTGGGTTGACCTAGGCATATGGAGT
648 CCCCTCCGGCCGGCT--GAG--TGCCCGCACGCTCGTTTCATGGGTTGACCTAGGCATATGGAGT
* *
16778950 TCATTCCCAATCTAAGCATGCGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGCG
709 TCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCG
* * * *
16779015 GCAGCACATGTTGGGCTCGGGAATGTGCTGGTGCCACATTTTTCTTCG-TCGGGGCACCATCG-T
774 ACAGCACATGCTGGGCTCAGGAATGTGCTGGTGCCACATTTTTCTTCGCT-GGGCCACCATCGCT
*
16779078 CGGAGCATTGCCGGAGAACCTGA
838 -GGAGCATCGCCGGAGAACCTGA
16779101 TCGGTGGCAT
Statistics
Matches: 767, Mismatches: 84, Indels: 18
0.88 0.10 0.02
Matches are distributed among these distances:
900 124 0.16
901 1 0.00
902 4 0.01
903 201 0.26
904 434 0.57
905 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (903 bp):
TGCGCACATGATGTGCGATGGCTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCCCATCAA
ACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
TAAAGTGTCTGAAATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTCGAGTTTTT
AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGGCTACAAAGTTTGGGGCCAAA
ACACCTTCCAAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAG
AAAATAAGTCATCTTCCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
GCCATAAAAATGGCATTGGCACGCAAAAATATAAAGATGTGCTGAAACCCACCTACCACCCTATC
AATCCACAGCTTGCGCATCCCGTCTCTCTGACCGACATACTGCCCGCCCACCCGCCCGCCACTTG
TTTCATCGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAAGATCAGACCAGACCAAGGGTT
GCGGTAGCAGGATCAGCAACACGCAGAGGGGGACCCGATCGATCCACGGCTTGCGCATCCCGCCC
CTCCGGCCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGACCTAGGCATATGGAGTTCATTCC
CAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAC
ATGCTGGGCTCAGGAATGTGCTGGTGCCACATTTTTCTTCGCTGGGCCACCATCGCTGGAGCATC
GCCGGAGAACCTGACCGACGGCATTGAGGTTCCGACTATCGGGGGGGCCAGGGCGGTG
Found at i:16780243 original size:26 final size:26
Alignment explanation
Indices: 16780213--16780265 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16780203 GTTAACTTAC
*
16780213 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16780239 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16780265 G
1 G
16780266 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16782934 original size:26 final size:26
Alignment explanation
Indices: 16782898--16782950 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16782888 GTTGACTTAG
16782898 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
*
16782924 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
16782950 G
1 G
16782951 ATAAGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:16783816 original size:26 final size:26
Alignment explanation
Indices: 16783786--16783838 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16783776 GTTTACTTAT
* *
16783786 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGAAATTCATTCACAGTCTAA
*
16783812 GCATACGAAATTCATTCCCAGTCTAA
1 GCATACGAAATTCATTCACAGTCTAA
16783838 G
1 G
16783839 ATCGAACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAATTCATTCACAGTCTAA
Found at i:16784720 original size:26 final size:26
Alignment explanation
Indices: 16784690--16784742 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16784680 GTTGACATGG
* *
16784690 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
16784716 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
16784742 G
1 G
16784743 ATTAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:16785618 original size:26 final size:26
Alignment explanation
Indices: 16785589--16785641 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16785579 GTTGACTTAG
*
16785589 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
16785615 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
16785641 G
1 G
16785642 ATCGGACATG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:16786517 original size:26 final size:26
Alignment explanation
Indices: 16786481--16786533 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16786471 GTTAACTTAG
*
16786481 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGCCTAA
*
16786507 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACAGAGTTCATTCCCAGCCTAA
16786533 G
1 G
16786534 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGCCTAA
Found at i:16787422 original size:26 final size:26
Alignment explanation
Indices: 16787384--16787434 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
16787374 TGACTTAGGG
* *
16787384 ATACAGAGTTCATTTCCAGTCTAAGC
1 ATACAGAGCTCATTCCCAGTCTAAGC
*
16787410 ATACGGAGCTCATTCCCAGTCTAAG
1 ATACAGAGCTCATTCCCAGTCTAAG
16787435 ATCGGATCGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACAGAGCTCATTCCCAGTCTAAGC
Found at i:16788112 original size:893 final size:889
Alignment explanation
Indices: 16779635--16800961 Score: 19329
Period size: 901 Copynumber: 23.7 Consensus size: 889
16779625 GGCCCTTATA
*
16779635 TTTGCTTCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
1 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* * * *
16779700 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGGATACCAAAAAAAATACAAGGATCAGGTCT
66 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * **
16779765 ACCAAGTTT-GGCCCTAAAACGCC-TTCTGAAAAAATTTTAAAAAATCCTGAACCAAAAAAAGTT
131 ACCAAGTTTGGGGCC-AAAACTCCTTTC-GAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTT
* * * *
16779828 TCAAAAATCCTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCGCATGAAGGCTTAAGGG
194 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
** *** * *
16779893 ACCATTGTATGAATTTACAAGAAATAAAAATGGCATTGGCACATAAAAATATGAAGATGTGCTTA
259 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
* * *
16779958 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCATAGT----
324 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC
* * * *
16780019 ----GCCCGCCCGCCCGCTCGTTTCATCTGTTGGCTTAGGCATATGGAGTTCATTCCCAATCTAA
389 GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * * * *
16780080 GATCAGACTGGACCAAGGGTTGCGGTAGCGGGAT-GGACAGAACGCAAAGGGGGACCCGGTCGAT
454 GATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGG-CAGCACGCAGAGGGGGACCCGGTCGAT
* * * ** * * * * * * *
16780144 CCTCGGCTTGCGTAGCCTACCCCTCTGGCTGGCTGAGCACCCACACGTTCATTTCATGGGTTAAC
518 CCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
* * *
16780209 TTACGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACT
583 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC-
* * * * * * *
16780274 GGACCAAGGGTTACAGCAGCACATGCTAGGCTC-GAGCATGTGCTGGTGCCGTATTTTTCTTCGT
647 -GAACGAGGGTTGCGGCAGCACATGCTGGGCTCAG-GCATGTGCTGGTGCCGCATTTTTCTTCGC
*
16780338 CGGGGCACCATCACCGGAGCATCACTGGAGGACCTGACCGACGGCATTGGGATTCCGACGATCGG
710 CGGGGCACCATCACC-G-G----A---GA--ACCTGACCGACGGCATTGGGGTTCCG-CGATCGG
* *
16780403 GGGGGTCGGGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
763 GGGGG-CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* * * *
16780468 TCCTATCCCTCATCAAACCTCCAGAACTCACACCCCCATAATGAGCATTTGAGATTTTACAGG
827 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
*
16780531 TTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
1 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* * *
16780596 TGTGCACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAACACAAGGATCACGT-T
66 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * * ** *
16780660 GACCAAGTTTGGGACCAAAAATCC-TTCTGAAAAAAGTTTAAAAAATCCCAAACTGTAAAAAGTT
131 -ACCAAGTTTGGGGCCAAAACTCCTTTC-GAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTT
** *
16780724 TTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
194 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* * *
16780789 ACCATTGTATGAATTTACAAGCCGTAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTA
259 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
* * *
16780854 AACCCACCTACCAGCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGACGAAGTGCCC
324 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC
** *
16780919 GCCCATCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGCA-TTCATTCCTAGTCTA
389 GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG-AGTTCATTCCCAGTCTA
** * * * * * *
16780983 AGATCAGACTGGACCGAGGGTTGTGGCAGCAGGATGGGCAACATGTAGAGGGGGACCCGGTCAAT
453 AGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGAT
** * * * *
16781048 CCCCGGCTTGTACATCCCACCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTGGAA
518 CCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
* * * *
16781113 TTAGGCATACAGAGTTCATTCCCAGTCTAAGCATGCTGAGTTCATTCCTAGTCTAAGATCGGACC
583 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-C
* * *
16781178 GGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
647 -GAACGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTC-T--TC
* *
16781243 GGGGCACCATCGTCGGAGCATCGCCAGAGCATCGTCGGAGAACCTGACCGACGACATTGGGGTTC
708 ---G---C--CG--GG-GCA---CC--ATCA-C--CGGAGAACCTGACCGACGGCATTGGGGTTC
* *
16781308 CAACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTACTGGTACTTGGCCCTT
754 C-GCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
*
16781372 ATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATT
818 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
16781436 TTACAGG
883 TTACAGG
* * * *
16781443 TTTGCTGCCAATAGCAATTAAAGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAATCC
1 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* * * *
16781508 TGTACACTTCGAGTTTTTAGCTGAATTTTTTCGTTCATACCAAAAAAAATACAAGGATCACGTCT
66 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * * * *
16781573 ACCAAGTTTGGGCCCAAAACTCCATCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTC
131 ACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTC
* *
16781638 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAATGGAC
196 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* *
16781703 CATTGTAGGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAA
261 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
* * * * * * *
16781768 CCCTCCTACCAGCCTATTGATCCACGGCTTGCACATCCCGTCTCTTTGGTCTG-TGTAGTGCCCG
326 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG-CCGACGTAGTGCCCG
* * * * * *
16781832 ACCGCCCACCCGGCCGCTCGTTTCATCGGTTGGCTTAGGGATACGAAGTTCATTCCCAGTCTAAG
390 CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
** * * * * * ** *
16781897 ATTGGACCGGACCAAGGGTTGCGGCAGCAGG-TACGACAGGACGCAAAGGGGGACCCGACCGATG
455 ATCAGACCAGACCGAGGGTTGCGGCAGCAGGAT-CGGCAGCACGCAGAGGGGGACCCGGTCGATC
* *** * * *
16781961 CCCGACTTGCGCATCCTTTCCCTCCGGTCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACT
519 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
* *
16782026 TAGGCATACGAAGTTCATT-CGATGTCTAAG-AT-C--AG---------A--C------CGGAC-
584 TAGGCATACGGAGTTCATTCCCA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACG
** *** **
16782068 --CGAGGGTTAAGGCAGCACATGCTGGGCTCAGGCATGTGCTGCCACCGCATTTTTCTTCATCGG
648 AACGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGG
* * *
16782131 GGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGACATTGGGGTTCCGGTGATCGGGGG
713 GG---CA----C----CATCACCGGAGAACCTGACCGACGGCATTGGGGTTCC-GCGATCGGGGG
* * * *
16782196 GG-CAGGGGGTGTGCGCACATGATGTGTGATGGGTACTGGTACTTGGCCCTTATATTGGCCTCCT
766 GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * * *
16782260 ATTCCTCATCAAACCTCAAGAACTCACATCCCCTTAATGAGCATTTGAGATTTTACAGG
831 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
*
16782319 TTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
1 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* * *
16782384 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGGCAAAAAAAATACAAGGATCACGTCT
66 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * * * *
16782449 ACCATGTTTGGGGAACAAAACTCCTTTCTAAAAAATTTTAAAAAAT-CTCGAACCGCAAAAGGTT
131 ACCAAGTTTGGGG-CCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCT-GAACCGTAAAAAGTT
*
16782513 TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
194 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* * * *
16782578 ACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGCCATGCAGAAATGTGAAGATGTACCTA
259 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
* * * *
16782643 AACCCACCTACTACCCTAACGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----
324 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC
* * * *
16782704 ----GCCCACCCGCCCGCTCATTTCGTCGGTTGGATTAGGCATATGGAGTTCATTCCCAGTCTAA
389 GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** * * **
16782765 GATCAGATC-GAACCAAGGGTTGTGATAGCAGGATTGGCAGCACACAGAGGGGGACCCGACCGAT
454 GATCAGACCAG-ACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGAT
***
16782829 CCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGAGTGCACGCTCGTTTCGTGGGTTGAC
518 CCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
* **
16782894 TTAGGCATACGGAGTTCATTCACAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATAAGACC
583 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-C
* * **
16782959 GAATCGAGGGTTGCGGCTGTACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGCC
647 GAA-CGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCC
* * *
16783024 GAGGCACCATCGCTGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGG
711 GGGGCACCA----T----CA---CCGGAGAACCTGACCGACGGCATTGGGGTTCCG-CGATCGGG
* * * *
16783089 AGGGCCGAGGGGGGGTGTGCACACATGATGTGCAATGGGTGCCT-GTACTTGGCCCTTATATAGG
764 GGGGCC---GGGGGGTGTGCGCACATGATGTGCGATGGGTG-CTGGTACTTGGCCCTTATATTGG
* * * *
16783153 CCCCGTATCCCTCATCAAACCTCGAGAACACACACCCCGTTAAAGAGCATTTGAGATTTTACAAG
825 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
16783218 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
1 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* * * * * *
16783283 TGTACACTTTGAGTTTTTAGCTGAATTTTTTTATGGATGCCAAAAAAAATACAAGGGTCACATCT
66 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * * * * *
16783348 ACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAACAATCCCGAACCGCAAAAAGTTTT
131 ACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTC
* * * *
16783413 GAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCAATGAAACTTCACGTGAAGGCTTAAGGGAC
196 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
*
16783478 CATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCATGCAGAAATATGAAGATGTGCCTAAA
261 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
*
16783543 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGC
326 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGC
* * * * * *
16783608 CCACCCGTCCACCCGCTCGTTTCGTCGGTTGGCTTAGGTATACAGAGTTCATTCCCAATCTAAGA
391 CCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
** * * *
16783673 TTGGACCAGA-C------T---G-AG--GG-T----TGCACGCAGAGGGGGACCCGATCGATCCT
456 TCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCC
* * * * * * ** * *
16783720 CGGCTTGCACATCCAGCCTCTCTGGCCGGTTGAGCGCCCGTATGCTCAATTCATGGGTTTACTTA
521 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* * * * *
16783785 TGCATACGGAGTTCATTCACAGTCTAAGCATACGAAATTCATTCCCAGTCTAAGATCGAACTAGA
586 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC--GA
* * * * * ** * *
16783850 CCAAGGGTTACAGCCGCACATGCTGGGCTTGGGCATGTGCTGGTACCGCATTTTTCTTCACCAGG
649 ACGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCC-GG
* * * * * * *
16783915 GCTCCATCGTCGGAGCATCGCCGGAGAACCTAACTGGCGGCATTGGGGTTTCGATGATCGGGGGG
713 G-------G-C--ACCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCG-CGATCGGGGGG
* *
16783980 GCCGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTCATATTGGCCCCCTA
767 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * *
16784045 TCCCTCATGAAACCTCGAGAACTCGCACCCCTTTAAAGAGCATTTGAGATTTTACAGG
832 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* *
16784103 TTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATTGGGACACTTTTTTCAAATGGTCACAAAATCT
1 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* * * * *
16784168 TGTACACTTCGAGTTTTCAGGTGAATGTTTTTGTGCATGCCAACATAGATACAAGGATCACGTCT
66 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
16784233 ACCAAGTTTGGGGCCAAAACT-CTTTGCGAAAAAATTTTAAAAAAT-CTCGAACCGTAAAAAGTT
131 ACCAAGTTTGGGGCCAAAACTCCTTT-CGAAAAAATTTTAAAAAATCCT-GAACCGTAAAAAGTT
* * * * *
16784296 TCCATAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGG
194 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* * * * *
16784361 ACCGTTGTATGAATTTACAAGACAGAATAATGGCATTGGCATGCCGAAATATGAAGATGTGCCTA
259 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
16784426 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC
324 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC
* * *
16784491 TCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTGATTCCCAGTCTAA
389 GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * * * ** *
16784556 GATTAGATCAAATCG-GGGTTTGTGGTAGCAGGATTGACAGCACCCAGACAGGGACCCGATCGAT
454 GATCAGACCAGACCGAGGG-TTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGAT
* * * * * * * * *
16784620 CCCCCGGCTTGCACCTCTCACCCATCTGACCGGCTGAGCACCTGCACGCTCGTTTCATGGGTTGA
518 -CCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA
* * * * **
16784685 CATGGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATTAGAC
582 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-
* * * * * * * * **
16784750 CGGACCGAGGGTTGTGGTAGAACATGTTGGGTTTAGGCATGTGCTGGTGCCGTATTTTTCTTCAT
646 C-GAACGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGC
**
16784815 CGGGGCACCATTTTCGGAGCATCACCGGAGAACCTGACCGGTGGCATTGGGGTTCCGACGAT-GG
710 CGGGG---CA----C----CATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCG-CGATCGG
* * *
16784879 GGGGGCC-GGGGG-GTGCACACATGATGTGTGATGGGTGCTGGTACTTGGCCATTATATTGGCCC
763 GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* * * *
16784942 CTTATCCCTCATCAAACCTCGAGAACTCATATCCCCTTAAAGAGCAATTGAGATTTTACAGG
828 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* *
16785004 TTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCT
1 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* * * * * *
16785069 TGTGCACTTCGAGTTTTCAGTTGAATGTTTTTGTGCATGGCAACAAAAATACAAGGGTCACGTCT
66 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * * *
16785134 ACCAAGTTTGGGGCTAAAA-TTCTTTCGAAAAAA-TTTAAAAAATCCCGAACCGCAAAAAGTTTC
131 ACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTC
*
16785197 AAAAATCATGAAAAATAGAAAAGGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
196 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
*
16785262 CATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCATGCAGAAATATGAAGATGTGCCTAAA
261 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
* * * *
16785327 CCCACCTACCACCCTATCGATCCACGGCTTGCTCATCCGGTATCTCTGGCCGACATAGTGCCCGC
326 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGC
* * * *
16785392 CCG-CCGCCCGCCCTCGTCGCTCGTTGCCTCGGTTGGCTTAGGCATACGGAGTTTATTACCAGTC
391 CCGCCCGCCCG--C-C--CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * * * *
16785456 TAAGATCGGACCAGATCGAGGGTTGCGGTAGCAGGATCGGTAGCACACAGAGGGGGACCCGG-C-
451 TAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCG
* * * *
16785519 -TCCCCGGCTTGTGCATCCCACCCCTCTGGCCGGCTGAGTGCCCGCACGGTCGTTTCGTGGGTTG
516 ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
* *
16785583 ACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGA
581 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * * * * * *
16785648 CATGATCGAGGGTTACGGCAGCACATGCTAGGCTCGGGCATGTGCTGTTGCCGTATTTTTCTTCT
646 C--GAACGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCG
* * *
16785713 CTGGGACACCATCGCCGGACCATCGTCGGAGAACCTGACCTG-CGGCATTGGGGTTCCGGGGATC
709 CCGGGGCACCAT--------CA-C--CGGAGAACCTGACC-GACGGCATTGGGGTTCC-GCGATC
* * *
16785777 GTGGTGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCATTATATTGGC
761 GGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* * *
16785842 CCCCTATCCCTCATCAAACCTCCAGAACTCACACCCCCTTAAAGAGCTTTTGAAAATTTT-CAGG
826 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG-AGATTTTACAGG
* * **
16785906 TTTGCCGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTGTAATGGTCACAAAATCT
1 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* ** * * *
16785971 TGTACACTTCAAACTTTTAGCTGAATTTTTTTGTGCCTGCCAAAAAAAATACAAGGATCATGTCT
66 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* **
16786036 ACCAAGTTTGGGGCCAAAACTCCTTCCG-AAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTC
131 ACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTC
*
16786100 AAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
196 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
**
16786165 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAA
261 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
* * * *
16786230 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTAG-CGGCATAGT------
326 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGC
** * *
16786288 --GCCCGCCCGCCCATTCGTTTCGTCGGTTGGCATAGGCATACGGAATTCATTCCCAGTCTAAGA
391 CCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * * ** * *
16786351 TCAG-CCAGACTGAGGGTTACAGTAGCAGTATCGATAGTACGCAGAGGGGGACCCAGTCGATCCC
456 TCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCC
* * *
16786415 CGGCTTGCGCATCCCGCCCCTTTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTAACTTA
521 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* *
16786480 GGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGCCTAAGATCGGACTGGA
586 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC--GA
* * ** * * *
16786545 CCGAGGGTTACGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCACA-TTTTCTTCGTCAGG
649 ACGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGG
* * * *
16786609 GCACCATCGCCGGAGCATCGTCGAAGAACCTGATCGACGGCATAGGGGTTCCGATGATC-GGAGG
714 GCACCAT---C--A-C--CG--G-AGAACCTGACCGACGGCATTGGGGTTCCG-CGATCGGGGGG
* *
16786673 GCCGGGGGGCTATGCGCACATGATGTGCGATGGGTGGTGGTACTTGGCCCTTATATTGGCCCCCT
767 GCCGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* *
16786738 ATCCCTCATCAAACCTTGAGAACTCACACCCGCTTAAAGAGCATTTGAGATTTTACAGG
831 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
*
16786797 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGGCACTTTTTTCAAATGGTCACAAAATCT
1 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
*
16786862 TGTACACTTCGAGTTTTTAGATGAATTTTTTT-TGCATGCCAACAAAAATACAA-GATCACGTCT
66 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
** * * * * **
16786925 ACCAAGCCTGGGGCTAAAACTCCTTCCAAAAAAATTTTAAAAAAT-CTCGAACCGCCAAAATTTT
131 ACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCT-GAACCG-TAAAAAGTT
* * ** *
16786989 TGAAAATTTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTGACGTGAAGGCTTAAGGG
194 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* * *
16787054 ACAATTGTATGAATTTACAAGCAATAAAAATGGTATTGGCATGCAGAAATATGAAGATGTGCCTA
259 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
* * * * * **
16787119 AACCCACCTACCACCCTATCAATCCACGGCTGGAGCATCCTGTCTCTCTTGCCGGTGTAGTGCCC
324 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC
* * *
16787184 ACCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAA
389 GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
16787249 GATTAGACCAGACCGAGGGTTACGGCAGTAGGATCGGCAGCACGTAGAGGGGGACCCGGCCGATC
454 GATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATC
* * *
16787314 CCCGGCTTGCGCATCCCACCCCTCTGGCTGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACT
519 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
* * * *
16787379 TAGGGATACAGAGTTCATTTCCAGTCTAAGCATACGGAGCTCATTCCCAGTCTAAGATCGGATCG
584 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CG
* * * * * * ** *
16787444 AACTGAAGGTTGCGGTAGCAAATGCCTTGGCTCAGCCATGTGCTGGTGTCATATTTTTCTTCACC
648 AAC-GAGGGTTGCGGCAGCACATG-CTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCC
* *
16787509 GGGGCACCATCACCAGAGAACCTGACCGACGGCATTGGGGTTCTAGCGATCGGGGGGGCCGGGGG
711 GGGGCACCATCACCGGAGAACCTGACCGACGGCATTGGGGTTC-CGCGATCGGGGGGGCCGGGGG
* * * **
16787574 GTATGCGCACATGATGAGTGATGGGTGCTGGTACTTGGCCCTTATATTGAACCCCTATCCCTCAT
775 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* *
16787639 CAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGACATTTTACAGG
840 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
*
16787689 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATTGGGACACTTTTTTCAAATGGTCACAAAATCT
1 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* * ** *
16787754 CGTACGCTTCTTGTTTTTTGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
66 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * *
16787819 ACCAAGTTTGGGGCCAAAACTACTTTTGAAAGAATTTTAAAAAATCCTGAACCGTAAAAAGTTTC
131 ACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTC
** *
16787884 AAAAATCATGAAAAATAGAAAAAAAGTCGTCTTGCCATGAAACTTCACGTGATGGCTTAAGGGAC
196 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* * *
16787949 CATTGTATGAATTTACAAGCAATAAAAATGGCATTGGCACGCATAAATATGAAGATGTGCCTAAA
261 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
* * * * * * *
16788014 CCTACCTACCACCCTATCAATCCACGGCTTACGCATCCCGTCTTTCTTGTCGACGTAGTGCCCAC
326 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGC
* * *
16788079 CCGCCCGCCCGCCCGTTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCACTCCCAGTCTAAGA
391 CCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * *
16788144 TC-GAACCAGACCAAGGGTTGCGGTAGTAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCC
456 TCAG-ACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCC
* ** * * * * * * * *
16788208 TCAACTTACGCATCCCGCCCATCTGGTCGACTGAGTGCCTGCACGATCATTTCGTGGGTTGACTT
520 CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
* * * *
16788273 AGGCATACAGAGTTCATTCCCTA-TCTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAATCG
585 AGGCATACGGAGTTCATTCCC-AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CG
* * * * * * *
16788337 GACTGAGGGTTGCGGTAGCACATGCCTTGGCTCGGGCATGTGTTGGTGTCGTATTTTTCTTCGCC
648 AAC-GAGGGTTGCGGCAGCACATG-CTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCC
16788402 GGGGCACCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCAGCGATCGGGGGGGCCGGGGG
711 GGGGCACCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCC-GCGATCGGGGGGGCC-GGGG
* * *
16788467 GGTGTGCACACATGATGAGCGATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCTCA
774 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
*
16788532 TCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGG
839 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* *
16788583 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATCGGGACACATTTTTCAAAT-G-----------
1 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* * *
16788636 -GTACACTTCGAGTTTTTAGATGAATTTTTTTGTGCATGCCAACAAAAATACAACGATCACGTTT
66 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * * * * *
16788700 ACCAAGTTTAGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTTAAACCTTAAAAAGTTTC
131 ACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTC
16788765 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
196 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* *
16788830 CATTGTATGAATTTCCAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAA
261 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
** * *
16788895 AACACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGTCGACGTAGTGCCCGC
326 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGC
* * * * * * *
16788960 CTGCCCGCCCTCTCGCTCGCTTCATCGATTGGCTTAGGCATACGGAGTTCAATCCCAGTCTAAGA
391 CCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
** * * * *
16789025 TTGGATCAGACCGAGGGTTGCGGCAGTAGGATCGGCAGCACGTAGAGGGGGACCTGGTCGATCCC
456 TCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCC
* * * * *
16789090 CAGCTTGTGCATCCCGTCCCTCTGGCCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACATA
521 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* * * ** * * *
16789155 AGCATACGAAGTTAATTCCCAGTCTCGGCATACGGAGTTCATTCCCAGTCTTAGATCAGATTGGA
586 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA--CGA
* * * * * * * * *
16789220 CCAAGGGTTACAGTAGCACATGCTGGGC-AAGTGCATGTGCTGGTGTCGCATTTTTCTACGTCGG
649 ACGAGGGTTGCGGCAGCACATGCTGGGCTCAG-GCATGTGCTGGTGCCGCATTTTTCTTCGCCGG
**
16789284 GGCACCATCGTCGAGCATCGCCGGAGAACCTGACCGACGG-ATTGGGGTTCCGACGATTAGGGGG
713 GGCACCA---T----CA---CCGGAGAACCTGACCGACGGCATTGGGGTTCCG-CGATCGGGGGG
* * *
16789348 GCCAGGGGGTGTGCGCACATGATGTGCGGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTA
767 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
16789413 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
832 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
*
16789471 TTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
1 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* * *
16789536 TGTACACTTC-ATGTTTTTGGCTGAATTTTTTTGTGCATGTCAAGAAAAATACAAGGATCACGTC
66 TGTACACTTCGA-GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* * * *
16789600 TACCAATTTTGGGACCGAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACCATAAAAAGTTT
130 TACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTT
* * * * *
16789665 CAAAAATCGTAAAAAATAGAAAACGAGTAGTCTTGCCATGAAACTTCACATAAAGGCTTAAGGGA
195 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
*
16789730 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATAAAGATGTGCCTAA
260 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
* *
16789795 ACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG
325 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG
* * * * *
16789860 CCCGCTCGCCCACCTGCCCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
390 CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * * *** *
16789925 AT-----CAGACTGAGGGCTACGACAGCAGGATCGGCAGCATGCAGAGGGGGATCCAACCGATCT
455 ATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCC
* * *** * * * *
16789985 TCGACTTATACATCTCACCCCTCTGGTCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
520 CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
* * * * * *
16790050 AGGCATACAGAGTTCATTCCGAGTCTAACCATACAGAGTTCATTCCTAGTCTAAGATCAGACCGG
585 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-C-G
* * * *
16790115 ACCAAGGGTTGCGGCAGCACATGC---CCTC-GAGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
648 AACGAGGGTTGCGGCAGCACATGCTGGGCTCAG-GCATGTGCTGGTGCCGCATTTTTCTTCGCCG
* *
16790176 GGGCACCATCGCCGGAGCATCGCCGGAGAACCTAACCTG-TGGCATTGGGGTTCCGGCGATC---
712 GGGCACCAT--------CA---CCGGAGAACCTGACC-GACGGCATTGGGGTTCC-GCGATCGGG
* * *
16790237 ---G--GGGGGGTTTGCGCGCATGATGTGCGATGGTTGCTGGTACTTGGCCCTTATATTGGCCCC
764 GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
16790297 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
829 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* *
16790358 TTTGCTGCCAGTAGCCGTTAAAGTGCCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
1 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* * *
16790423 TATACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCT
66 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * * * *
16790488 A-CAAGTTTAGGACCAAAACTAC-TTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTT
131 ACCAAGTTTGGGGCCAAAACTCCTTTC-GAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTT
* * *
16790551 TAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGA
195 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
**
16790616 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAA
260 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
** * * * * * *
16790681 ACTTACCTACCACCCTATCAATCCACGGCTTGTGCATCCCATCTCTCT-GACGAGCATAGTACCC
325 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCC
* * * * * * *
16790745 GCTCGTCCACCCGCACGCTGGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCACTCCTAGTCTAA
389 GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * ** * * * * * * *
16790810 GATTGGA-CTGAAACGAGGGTTATGGCCGTAGGATCGGCAGCACGTAGAGGGAGACCTGATTGAT
454 GATCAGACCAG-ACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGAT
** * * * ** *
16790874 CCCCTACTTGCGGATCCCGCCCGTCTGCCCGATTGAGCGCCCGCACGCTCATTTCGTGGGTTGAC
518 CCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
* * * *
16790939 TTAGGCATACGGAGTTCATTCCTAGTATAAGCATATGGAGTTCATTCCCATTCTAAGATCGGACC
583 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-C
* * * * * * * * * ** ** *** **
16791004 GGACCGAAGGTTGCAGTAGCAGGAT-C--GACAGCACGCA-GAGGGGGACCCG-ATCGATCCCCA
647 -GAACGAGGGTTGCGGCAGCA-CATGCTGGGC-TCAGGCATGTGCTGGTGCCGCATTTTTCTTC-
** * ** * * * *** ****
16791064 GCTTGTG---CATC-CC---GCCCCT--CTGGTCGG--TTGAGCG--CC-CG-TACGCTTGTTTT
708 GCCGGGGCACCATCACCGGAGAACCTGAC-CGACGGCATTG-GGGTTCCGCGAT-CGGGGGGGCC
** * * * * * ** ** ****
16791114 ATGGGTTGACTTAG-GCATACGGA-GTTC-AT---TCCCAGT-CTAAG--C--ATA-TGGAGTTC
770 GGGGGGTG---T-GCGCACA-TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* ** ** * *** *** ** * *** *
16791167 -ATTCCC-AATGTAAGATCG-G-AC-CAAACCGAGGGTTGCGGTAGCACATGCTG-GGCT-CGGG
830 TA-TCCCTCATCAAACCTCGAGAACTCACACC--CCCTTAAAG-AGCATTTG-AGATTTTACAGG
** ** ** * ***** * *** * ** *
16791225 CATG-TGCTGGT-GCCA-T-ATTTTTCTTCGCCGGGG-CA-TCATCGCCGAAGCATGGCCGGAGA
1 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT-TTTTTC-AA--ATGGTCACAAA
** * * * ** ** **** * * * * *
16791284 A-CCCGAACAACGGCATTAGCG-TTTCGGCGATCGGGGGTGCCGGTGGGGTTATG-C-ACATGAT
62 ATCTTGTAC-A---C-TTCGAGTTTTTAGC--T---GAAT-TTTTTTGTG-CATGCCAACA-AAA
* * * * ** * * ** *** **
16791345 GTGCGATGGGTGCTGGTACTTGGCCCTTA-TATTGGTCTCCTATCCCTCATCAAACCTCGAGAAC
114 ATAC-AAGGAT-CACGT-C-T--ACC-AAGT-TTGG-GGCC-AAAACTC--C---TTTCGA-AA-
* ** * ** * * * * ** ** * **
16791409 TCACACCCTCGTAAAGAGCATTTTGAGA-TGTTACAGGTTTGCTGCCAGTTGCCATTAAAGTGTC
162 --A-A--ATTTTAAA-A-AATCCTGA-ACCGTAAAAAGTTT-C--AAAAAT--CATGAAA-AAT-
* ** * * * * * ** *
16791473 TGAAATGGGGATACTTTTTTCAAATTGTCA-GAAAATCTTGTACACTTCAAGTTTTAAGCTGA--
212 AGAAAACGAG-T-C----GTC---TTGCCATG-AAA-C-T-T-CACGTGAAGGCTTAAG-GGACC
* * * * * * ** ** * * *
16791535 A-TGT-T--TTTGTGCATGCCAACAAAAAT-ACA-AGG-AT-CACG-TCTACCAAGTTTGGGGTC
262 ATTGTATGAATT-TACAAGCC-ATAAAAATGGCATTGGCATGCA-GAAATATGAAG-AT-GTGCC
* ** ** *** *** ** * **** * * *
16791591 AAAACTCCTTCTGAAAAAATTTTAAAAAGTCTCA-AAC---CGAAAAAAGTTTGAAAATCAT-GA
322 TAAAC-CCACCT---ACCACCCTATCGA-TC-CACGGCTTGCGCATCCCGTCT----CTC-TGGC
** **** * * * ** *** * ** * *
16791651 C-AAATAGAAAACG--AG-TCGCCTTG-CCATTAAACTTC-ACGTGAAGTCTTAAGGGACCAT-T
376 CGACGTAGTGCCCGCCCGCCCGCC-CGCCCGCT-CGTTTCGTCG-GTTGGCTT-A-GG--CATAC
* ** * * * * * *** ** * * **
16791709 GTA-TGAATTTACAAGCCATAA-A--A-A--TGGCATTGGCATGCAGAAATATGAAGAT-GTGCT
434 GGAGTTCA-TTCCCAGTC-TAAGATCAGACCAGACCGAGGGTTGCGGCAGCA-G--GATCG-GC-
* * ****** ** ** * * * * *
16791766 TA-AACCCA-CCTACCACCCTATCGATCCATGGCTTGCGCATCTCGTCTCTCTGGCCGACGTAGT
492 -AGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC-T-GA
* *
16791829 GCCCGCCCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
554 G--CGCCCG--CA------CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * * *
16791894 CTAAG-AT-C--AG---A---CCGGACT--GA-GGGTTACG-ACAGCAGGATT--GGCAGCACAC
609 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG--ACGAAC-G-AGGGTTGCGGCAGCACA-
* ** * ** *** * *** * * **
16791943 AGAGGGGGACCCAACCGATCCCCAGGTTG-CGCATCTCGCCCCTCTGGCCGGCTGGGCGCCCGCA
669 TG-CTGGG-CTCAGGC-ATGTGCTGG-TGCCGCAT-T--TTTCT-TCGCC-G--GGGCACCATCA
** * *** ** * * ** **
16792007 CGCTCTTTTTATAGGTTGACTTA-GGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAACC
723 --C-C---GGAGAACCTGACCGACGGCAT-TGG-G---GTT-CC-G-C---GATCGG-GGGGGCC
* * * * * * * * * * *
16792071 GAGGGTTGCGGTAGCACATGCTG-G-GCTCGG-GCAT-GTGCTGGTGCCGCATTTTTCTTCGTAG
770 GGGGGGTG-TG-CGCACATGATGTGCGATGGGTGC-TGGTACTTG-GCC-C--TTAT-AT--T--
* * * * * * * * * ** *
16792132 GGGCACC-AT-CGTCGGAGC-ATCGTCGGAGAAC-C-CGACCGGCGGCATT--AGGGTATCGGCG
823 GGCCCCCTATCCCTC--ATCAAACCTC-GAGAACTCAC-ACC--C--CCTTAAAGAGCATTTGAG
**** *
16792190 ATCGGGGGGGCCGG
880 AT----TTTACAGG
*** * * **** * * * *
16792204 GGGGAC-GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT-TGGCCCCTTATCCCTC
1 TTTG-CTGC-CA-G-T-AGCCATTAAAG-T-GT-C-T-G-----AAATGGGGACACTT-T---T-
* *** * * * * **
16792267 ATCAAACCTCGAGAACTCAC-ACCCCTT-TAAAGAGCATTTGAGATTTTA-CAGGTTTGTTGCCA
46 TTCAAA--T-G-G---TCACAAAATCTTGT--ACA-C-TTCGAGTTTTTAGCTGAATT-TT----
** * * ** **
16792329 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTAAAATGGTCAAAAAATCTTGTAC-ACTT
95 -T-----TT---GTG-C----AT-GCCA-AC-----AAAAAT--AC-AAGGATCACGT-CTAC--
* *** ** * * *** *** ** * **
16792393 CGAGTTTTTAG-CTGAA-TGCTTTTG--TGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
133 CAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAT-TTTA-AAAAAT-C-CTGAAC-CG--TAAAAA
* * *** *
16792454 GTTTGGGGCAAAACTCCTTCTGAAAAAATTTTAAA-AAGTCTCGAACCGAAAAAAGTTTGAAAAT
191 GTTT----CAAAAAT-C--ATGAA-AAATAGAAAACGAGT-------------------------
*
16792518 CGTGAAATATAGAAAACGAGTCGTCTTGCCGTGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
223 ---------------------CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
16792583 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
267 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
* * * *
16792648 TACCACCATATTGATCCACGGC-TGACGCATCCCGTCTCTCTGGCCAACGTAGAGCCCGCCCGCC
332 TACCACCCTATCGATCCACGGCTTG-CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCC
* * *
16792712 CGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGTATACGGAGTTCATTCCCAGTCGAAGATCAGA
396 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * * * * *
16792777 TCGGACCGAGGGTT---GCAGCAGGATCGGTACCACGCAGAGGGGGACTC-GACAGATCCCTGTC
461 CCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTC-GATCCCCGGC
* * * * * *
16792838 GTACGTATCCCGCCCTTCTGGCCTGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCA
525 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* *
16792903 TACGAAGTTCATTCCCAGTCTAAG-AT--TG-G---A---CC-G-----GA-C---C--A--AGG
590 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACGAACGAGG
* * * * *
16792944 GTTACGGCAGCACATGTTGGGCTCAGGCATGTGCTGGTGCCACATTTTGCTTCGTC-GGGCACCA
655 GTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCA
* * * *
16793008 TCGTCGGAGCATCGTCAGAGAACCTGACCGACGGCATTGAGGTTCTGGCGATCGGAGGGACCGAG
720 ---TC--A-C--CG---GAGAACCTGACCGACGGCATTGGGGTTC-CGCGATCGGGGGGGCCG-G
*
16793073 GGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
772 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* *
16793138 CATCAAACCTCGAGAACTCACA-CCCCTTAAAAAGCATTTGAGATTTTATAGG
837 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* * *
16793190 TTTGCTACCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCGAATGGTCACAAAATCT
1 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
*** *
16793255 TGTACACTTTTTGTGTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
66 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * * * *
16793320 ACCAAGTTT-GGGTCAAAACTCCTTTCGAAAAAAGTTTAAAAAATCCCGAACCGCAAAAACTTTC
131 ACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTC
*
16793384 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTG-CATGAAACTTCACTTGAAGGCTTAAGGGAC
196 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
16793448 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
261 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
* *
16793513 CTCATCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGC
326 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGC
* * * *
16793578 CCGCCCGCCAGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCTAGTCTAAGA
391 CCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
** * * * *
16793643 TTGGACC-GAACCGAGGGTTGCAGCAGTAGGATCGGCAGCATGCAGAGGGGGACCCGATCGATCC
456 TCAGACCAG-ACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCC
* * *
16793707 CTGGCTTGCGCATCCCACCCATCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
520 CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
*
16793772 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGAGTC-GATC-
585 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA-TCGGA-CG
* * * *
16793835 AGACTGAGGGTTGCAGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGCC
648 A-AC-GAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCC
** *
16793900 GGGGCACCATCGCCGGAGCATCGCCGTAGAACCTGACCGGTGGCATTGGGGTTTCGACGATCGGG
711 GGGGCACCAT---C--A-C--CG--G-AGAACCTGACCGACGGCATTGGGGTTCCG-CGATCGGG
** * * **
16793965 GAAGCCGGGAAGGGGGTATGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCAGATATTGG
764 GGGGCC--G--GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* * *
16794030 CCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAAAACATTTGAGATTTTAC-GG
825 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* * *
16794094 TTTTGCTGCCAGTAACCATTAAAGTGTCTAAAATGGGGACACTTTTTTTCCAATGGTCACAAAAT
1 -TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTTCAAATGGTCACAAAAT
* * *
16794159 CTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAAAAAAATACAAGTATCACGT
64 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* * **
16794224 CTACCAAGTTTGGAGCCAAAACTGC-TTCTGAAAAAATTTTAAAAAATCCTGAACCCCAAAAAGT
129 CTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGT
* * * *
16794288 TTTAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATTAAACTTCACGTGAAGGCTTAAGG
193 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
* *
16794353 GACCATTGTATGAATTTACAAGCCATAAAAATGCCATTGGCATGCAAAAATATGAAGATGTGCCT
258 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT
* * *
16794418 -AACCCACCTACCACCCTATCGATCCATGCCTTGCGCATCCCGTCTATCTGGCCGACGTAGTGCC
323 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCC
* ** * **
16794482 CGACCGCTAGCCCGACCGCTCGTTTCGTCGGTTGGCTTAGGCATATAGAGTTCATTCCCAGTCTA
388 CGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* *** ** * * * * * *
16794547 AGAACAGATTGGATGGAGGGTTGCAGTAGCAGGATCGACAGCA-GTAGAGGGGGTCCCAGTCGAT
453 AGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGAT
* * * * * * *
16794611 CCCC-GCTTTCGCATTCCGCCCCTCTGCCCGGCTGGGTGCCCGCACGCTCATTTTGTGGGTTGAC
518 CCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
* * *
16794675 TTAGGCATTCGGAGTTCATTCCCAGTCTAAGCGTACGGAGTTCATTCCCAGTCTAAGATCAGACT
583 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC-
* * * * * * * *
16794740 GGATCGAGGGTTGCAGTAGCACGTGCTGGGCTC-GAGCATGTACTAGTGCCGTATTTTTCTTCAC
647 -GAACGAGGGTTGCGGCAGCACATGCTGGGCTCAG-GCATGTGCTGGTGCCGCATTTTTCTTCGC
*
16794804 CGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGG
710 CGGGGCACCAT--------CA-C--CGGAGAACCTGACCGACGGCATTGGGGTTCCG-CGATCGG
16794869 GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
763 GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
*
16794934 CCTATCCCTCATCAGACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
828 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* * *
16794996 TTTGCTGCCAGTAGCCATTAAAGTGCCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCA
1 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* *
16795061 TGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCT
66 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * * * * * ** *
16795126 ACCAAGTTTAGGGTCGAAACTCATTGCAAAAAAATTTTAAAAAATCCCAAACCTTAAAAAGTATT
131 ACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGT-TT
*
16795191 -AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
195 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* * *** *
16795255 CCATTGTACGAATTTACAAGCCATAAAAATGGCAGTGGCACATAGCAATATGAAGATGTGCCTAA
260 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
* * *
16795320 ACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCTGACCTAGT----G
325 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG
* * * * *
16795381 -CTGCCCG-CTG---GCTCGTTTCGTCGGTTTGCTTAGGCATACGAAGTTCATTCCCAGTCTAAT
390 CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * ** * * * * * **
16795441 ATCGGATCAGACCTAGGGTTGCGATAGCAAGACCGGTAACACACAGAGGGGGACCCGACCGATCC
455 ATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCC
* * * * * * * *
16795506 TCGACTTACGCATCCCGCCCCTTTGGTCGGCTGAGCTCTCACACGCTCGTTTCGTGGGTTGACTT
520 CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
* * * *
16795571 AGGCATGCGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGAATTGG
585 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA--CG
* *
16795636 ACCGAGGGTTGTGGCAGCACATGCTGGGCTC-GAGCATGTGCTGGTGCCGCATTTTTCTTCGGCC
648 AACGAGGGTTGCGGCAGCACATGCTGGGCTCAG-GCATGTGCTGGTGCCGCATTTTTCTTC-GCC
* * * * **
16795700 -GGGCACGATCGCCGGAGAACCTGACCGACGGTATTGGGGTTCTAGCGAT-TAGGGGGCCGGGGG
711 GGGGCACCATCACCGGAGAACCTGACCGACGGCATTGGGGTTC-CGCGATCGGGGGGGCC-GGGG
* * *
16795763 GGTGTACGCACATGATATGCGATGGGTGCTGGTACTTGGCCCTTAAATTGGCCCCCTATCCCTCA
774 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* * *
16795828 -CAAACCTCGAGAACTCTCACCCCCTTAAGGAGCATTTCAGATTTTACAGG
839 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* * * * * *
16795878 TTTACTGCCAGTAGCCATTAAAGTTTCTAAAACGGGGACACTTTTTTCAAATTGTTACAAAATCT
1 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* * *
16795943 TGTGCACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCT
66 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * * *
16796008 A-CAATGTTTAGGGCCAAAAATCC-TTCTGAAAAAA-TTTAAAAAATCCTGAATCGCAAAAAGTT
131 ACCAA-GTTTGGGGCCAAAACTCCTTTC-GAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTT
* * * * *
16796070 TCAAAAATCGTGAAAAATAAAAAATGAGTGGTCTTGCCATGAAACTTCACGTCAAGGCTTAAGGG
194 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* * ** *
16796135 ACCATTGTACGAATTTACAAGCCATAAAAATGGCATTGGTACACAGCAATATGAAGATGTGCCTA
259 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
* * ** *
16796200 AACCAACCTACCACCCTATTGATTAACGGCTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCC
324 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC
* * * * *
16796265 GCCCGCCCGCCCACCCGCTCGTTTCGTCAGTTGGCTTAGGCATATGGAGTTCATTGCCAATCTAA
389 GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * ** *
16796330 GATCGGACTAGATCGAGGGTTACGACAGCAGGATCGACAGCACGCAGAGGAGGACTTGGCCGATC
454 GATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATC
* ** * ** * *
16796395 CTCGGCTTGCGCATCCTACCCCTCTGGCCTGCTGAGCGCCCGCACGCTTATGTCGTTGGTTGACT
519 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
* * *
16796460 TAGGCATACGGAGTTCATTCCTAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACTG
584 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC--
* * * * * *
16796525 GACCGAGGGTTGTGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACTG
647 GAACGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCCG
*
16796590 GGGCACCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGG
712 GGGCACCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCG-CGATCGGGGGGGCC-GGGGG
*
16796655 AGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
775 -GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
*
16796720 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGG
839 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* * * *
16796771 TTTGTTACCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCCCAAAATCT
1 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* * *
16796836 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAGAAAAATACAAGGATCATGTCT
66 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * * *
16796901 A-CAATGTTTTGGGCCAAAAATCCTTCCCAAAAAATTTTAAAAAAT-CTCGAACCGTAAAAAGTT
131 ACCAA-GTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCT-GAACCGTAAAAAGTT
*
16796964 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAGGTGAAGGCTTAAGGG
194 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* **
16797029 ACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTA
259 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
* * * * * * * *
16797094 AACCCACCTACTACACGATCGATCCACGACTTGCGCATCCCGTCTCTTTCGCCGGCGTAGTGCCT
324 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC
* * * *
16797159 GCCCGTCCGCCCGCCCGCTCGTTTCGTCAGTTGGC-T-----TACGGAATTCATTCCCAGTATAA
389 GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * * *
16797218 GATC-GAACCGGACCAAGGGTTGCGGCAGCACGATTGGCACCAAGCAGAGCGGGACCCGATCAAT
454 GATCAG-ACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGAT
* * * * * * **
16797282 CCCCGACTTGTGCATCCCGCCTCTCTGGCCGGTTGGGCGCCCGCACGCTCTTTTTATGGGTTGAC
518 CCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
* *
16797347 TTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACC
583 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-C
* * ** * * *
16797412 AGATCGAGGGATGCGGCAGCACATGCTACGCTC-GAGCATGTACTGGTGCCGCATATTTCTTCCC
647 -GAACGAGGGTTGCGGCAGCACATGCTGGGCTCAG-GCATGTGCTGGTGCCGCATTTTTCTTCGC
* * * * *
16797476 CTGGGCACCATCGCTGGAGCATCACCGGAGAACCTGACCGGCGGTATTAGGGTTCCGATGATCGG
710 C-GGG-------GC---ACCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCG-CGATCGG
* * *
16797541 GGGGGCTGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTTCTTGGCCCTTATATTGGCCC
763 GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
*
16797606 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGG
828 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* *
16797668 TTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAAAAAATCT
1 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* * *
16797733 TGTACACTTCGAGTTTTTAGCTG-ATGTTTTTCGTGCATGCCAATAAAAATTCAAGGATCACGT-
66 TGTACACTTCGAGTTTTTAGCTGAAT-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* *
16797796 TCACCAAGTTTGGGACCAAAACTCCTTTCGAAAACATTTTAAAAAATCCTGAACCGTAAAAAGTT
130 T-ACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTT
*
16797861 TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
194 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* * *
16797926 ACCATTGTATGAATTTACAAGCCATAAACATGGTATTGCCATGCAGAAATATGAAGATGTGCCTA
259 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
* * * * *
16797991 AACCCACCTACCACCCTATCGGTCCACGGCTTGCGCATCCTGTGTCTCTGGCCGGCGAAGT----
324 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC
* *
16798052 GCCCGCCCGCCCGCACGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
389 GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** * * * *
16798117 GATCAGACCGGACTGAGGGTTGTGATAGTAGGATCGACAGCACGTAGAGGGGGACTCGGTCGATC
454 GATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATC
** * * * * * * ** * *
16798182 CCCAACTTGTG-ATCTCGCACCTCTGGCCGCCTGAGCACTCATACACTTGTTTCGTGGGTTGACT
519 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
* * *
16798246 TAGGCATACGGAGTTCATTCCCATTCTAATCATATGGAGTTCATTCCCAGTCTAAGATCGGACGA
584 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACGA
* ** * * * * * *
16798311 GACCGACGGTTTTGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGGCACATTTTTCTTCACTG
649 -A-CGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCCG
* **
16798376 GGGAACCATCGCCCGAGCATCGTCGGAGAACCTGACCG-C-GCATTGGGGTTCCAAAGATC--GG
712 GGG---CA----CC-ATCA-C--CGGAGAACCTGACCGACGGCATTGGGGTTCC-GCGATCGGGG
* *
16798437 GGGCACGGGGGGT-TGCGCACATGATGTGTGATGGGTGCTGGTA-TT-GCCCTTAT-TTGGACCC
765 GGGC-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* **
16798498 CTATCCCTC--CAAACCTTCGAGACCTCACACTACCTTAAAGAGCATTTGAGAATTTTACAGG
829 CTATCCCTCATCAAACC-TCGAGAACTCACACCCCCTTAAAGAGCATTTGAG-ATTTTACAGG
16798559 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCCACAAAATT
1 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT-CACAAAA-T
* * *
16798624 CTTGTACACTGTCGAGTTTTTAGCTGAAATTTTTTGTCCATTCCAAACAAAAATACAAGGATCAC
64 CTTGTACACT-TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AACAAAAATACAAGGATCAC
* * * * *
16798689 GTCCTACCAAGTTTGGGGCC-AAACTCATTACCCAAAAAA-TTTAAAAAAT-TTGAATCGTAAAA
127 GT-CTACCAAGTTTGGGGCCAAAACTCCTT-TCGAAAAAATTTTAAAAAATCCTGAACCGTAAAA
* *
16798751 AGTTTC-AAAATCAATCGAAAAATAAGAAAACGAGTCATCTTGCCATGAAACTTCAGGTGAAGGC
190 AGTTTCAAAAATC-AT-GAAAAAT-AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* * *
16798815 TTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGATGAT
252 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
* * ** * *
16798880 GTGCCTAAACCCACCTACCACACTATTGATCCACGGCTTGCGCATCTTGTCTCTTTGGCCGGCGT
317 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
* * * *
16798945 AGTGCCCACCCGCCCACCCGCCCGCTCGTTTCGTTGGTTCGCTTAGGCATACGGAGTTCATTCCC
382 AGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * * * * * * * *
16799010 AGTATAAGATCAGACCGGACCAAGGGTTGTGGTAGCAGGATTGGCAGTAAGCAGAGGGGGACCCA
447 AGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCG
* * * * * * * *
16799075 GTCGATCCTCGGCTTGTGCATCCCGCCTCTCTGGCCGGTTGAGCGCCTGCTCACTCGTTTCATGG
512 GTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
* *
16799140 GTTGACTTAGGCATACAGAGTTCATTCCC-GATCTAAGCATACGGAGTTCATTCCCAGTCTAACA
577 GTTGACTTAGGCATACGGAGTTCATTCCCAG-TCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * *
16799204 TCGGACCAGACGGAGGGTTGTGACAGCACATGCTGGGCTC-GAGCTTGTGCTGGTGCCGCATATT
641 TCGGACGA-AC-GAGGGTTGCGGCAGCACATGCTGGGCTCAG-GCATGTGCTGGTGCCGCATTTT
* ** * * * *
16799268 TCTTTC-TCGGGGCACCATCGTCGGAAAACCTGACTGGCGGTATTGGGGTT-CGACGATCGGGGG
703 TC-TTCGCCGGGGCACCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCG-CGATCGGGGG
*
16799331 GGTCC-GGGGGTGTGCGCACATGATGTGCCGATGGGTACTGGTA-TTGGCCCTTATATTGGCCCC
766 GG-CCGGGGGGTGTGCGCACATGATGTG-CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* *
16799394 CTTATCCCTCATCAAACCTTGAGAACTCACA-CCCCTTAAAAAGCATTTGAGATTTTACAGG
829 C-TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* *
16799455 TTTGCTG-CAGTAGCCATTAAAGTGTCCTGAAATAGGGACACTTTTTTCGAATGGTCACAAAAAT
1 TTTGCTGCCAGTAGCCATTAAAGTGT-CTGAAATGGGGACACTTTTTTCAAATGGTCAC-AAAAT
* *
16799519 CTTTGTACACTT-GAGTTTTTAGCTG-ATGTTTTTCGTGGCATGCCAAC-AAAATACAAGGATTA
64 C-TTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTTGT-GCATGCCAACAAAAATACAAGGATCA
* * * *
16799581 CGTCTATC-A-TTTTGGACCAAAAACCTCCTTTCG-AAAAATTTT-AAAAATCTTGAACCGTAAA
126 CGTCTACCAAGTTTGGGGCC-AAAA-CTCCTTTCGAAAAAATTTTAAAAAATCCTGAACCGTAAA
*
16799642 AAGTTTCAAAAATCGTG-AAAATAG-AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
189 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* * *
16799705 AA-GGACCATTGTATGAATTTACAAGCCATAAACATGGGATTGGCACGCAGAAATATGAAGATGT
254 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
* * * *
16799769 GCCTAAACCCACCGACCACCCAATCGATCCACGGCTTGCGCATCCTGTCTCTCTGACCGACGTAG
319 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAG
* * * *
16799834 T--------GCCCGCCCGCACGCTCGTTTCGTCGGTCGGCTTAGGCATACGAAGTTCATTCCCAA
384 TGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
* * * * * * ** *
16799891 TTTAAGGTCAAACCAAACTGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCTAGC
449 TCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGT
* * * * * *
16799956 CAATTCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGTTCATTTCATGGGT
514 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* *
16800021 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCGTACGGAGTTCATT-CCAGTCAAAGATCG
579 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * * *
16800085 GACAATATCGAGGGTT-CTGGCAGCACATGCTGGGCTC-GAGAATGTACTGGTGCTGCCTTTTTC
644 GACGA-A-CGAGGGTTGC-GGCAGCACATGCTGGGCTCAG-GCATGTGCTGGTGCCGCATTTTTC
* * * * *
16800148 TTCGCCGGCGCACCATCGCCAGAGAACCTGACTGGCGGCATTGGGGTTCCAGCGATC-GGGGGGC
705 TTCGCCGGGGCACCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCC-GCGATCGGGGGGGC
* * ** *
16800212 CAGGGGGTTTGCGCACATGATGTATGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
769 CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
*
16800277 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTGCAGG
834 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
*
16800333 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG-CATTTTTTTCAAATGGTCACAAAATCT
1 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* *
16800397 TGTACACTTCGATTTTTTACCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
66 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * * *
16800462 A-CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT-CTCAAAACGCAAAAAGTTT
131 ACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCT-GAACCGTAAAAAGTTT
** *
16800525 TGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
195 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* * *
16800590 CCATGGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAATATGTGCCTAA
260 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
* * * *
16800655 ACCAACCTACCACCCTATCGATCCACGGCTTGCGCATCTCATCTCTCTGG-C--CG--GTG-CAG
325 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG
* * * *
16800714 --TGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCACTCCTAGTCTAAG
390 CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * * **
16800777 ATCAGATCGGATCGAGGGTTGCGAG-AGCAGGATCGACAGCATGTAGAGGGGGACCCAATCGATC
455 ATCAGACCAGACCGAGGGTTGCG-GCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATC
* * * *
16800841 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGA-CTGCCCGGACGCTCGTTCCGTGGATTGAC
519 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC-GCCCGCACGCTCGTTTCGTGGGTTGAC
* * * * **
16800905 TTAGACGTACAGAGTTCATTCCCAGTCTAAGCAGACAAAGTTCATTCCCAGTCTAAG
583 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
16800962 CATATGGAGT
Statistics
Matches: 16873, Mismatches: 2649, Indels: 1833
0.79 0.12 0.09
Matches are distributed among these distances:
861 1 0.00
862 4 0.00
863 10 0.00
864 4 0.00
865 17 0.00
866 7 0.00
867 10 0.00
868 25 0.00
869 196 0.01
870 11 0.00
871 225 0.01
872 15 0.00
873 11 0.00
874 132 0.01
875 167 0.01
876 238 0.01
877 318 0.02
878 206 0.01
879 273 0.02
880 349 0.02
881 740 0.04
882 201 0.01
883 103 0.01
884 15 0.00
885 533 0.03
886 337 0.02
887 356 0.02
888 664 0.04
889 125 0.01
890 496 0.03
891 687 0.04
892 612 0.04
893 919 0.05
894 761 0.05
895 224 0.01
896 797 0.05
897 493 0.03
898 423 0.03
899 781 0.05
900 512 0.03
901 1182 0.07
902 274 0.02
903 357 0.02
904 543 0.03
905 286 0.02
906 174 0.01
907 225 0.01
908 96 0.01
910 3 0.00
911 15 0.00
912 558 0.03
913 101 0.01
914 31 0.00
915 59 0.00
916 20 0.00
917 62 0.00
918 41 0.00
919 26 0.00
920 14 0.00
921 18 0.00
922 3 0.00
923 5 0.00
924 2 0.00
925 12 0.00
926 1 0.00
927 2 0.00
928 8 0.00
929 56 0.00
930 13 0.00
931 12 0.00
932 2 0.00
934 6 0.00
935 1 0.00
939 2 0.00
940 2 0.00
941 5 0.00
943 3 0.00
944 1 0.00
945 1 0.00
946 3 0.00
949 2 0.00
950 2 0.00
953 1 0.00
954 2 0.00
955 2 0.00
956 8 0.00
957 12 0.00
958 2 0.00
959 11 0.00
960 5 0.00
961 6 0.00
962 5 0.00
963 1 0.00
964 1 0.00
965 1 0.00
966 2 0.00
968 4 0.00
969 1 0.00
970 2 0.00
971 1 0.00
972 11 0.00
973 9 0.00
974 4 0.00
975 8 0.00
977 3 0.00
978 2 0.00
979 5 0.00
980 4 0.00
981 1 0.00
982 6 0.00
983 2 0.00
984 1 0.00
985 6 0.00
986 4 0.00
987 1 0.00
988 4 0.00
989 1 0.00
990 10 0.00
991 1 0.00
992 14 0.00
993 8 0.00
994 5 0.00
996 3 0.00
997 4 0.00
998 11 0.00
999 12 0.00
1000 19 0.00
1001 10 0.00
1002 2 0.00
1003 2 0.00
1004 19 0.00
1005 8 0.00
1006 7 0.00
1007 3 0.00
1008 7 0.00
1009 24 0.00
1010 10 0.00
1011 7 0.00
1012 15 0.00
1013 6 0.00
1014 8 0.00
1015 1 0.00
1016 12 0.00
1017 1 0.00
1018 2 0.00
1019 1 0.00
1020 3 0.00
1021 1 0.00
1022 3 0.00
1023 2 0.00
1024 175 0.01
1025 250 0.01
1026 185 0.01
1027 389 0.02
1028 210 0.01
1029 157 0.01
1030 188 0.01
1031 198 0.01
1032 230 0.01
1033 163 0.01
1034 105 0.01
1035 150 0.01
1036 125 0.01
1037 72 0.00
1038 115 0.01
1039 133 0.01
1040 156 0.01
1041 96 0.01
1042 136 0.01
1043 140 0.01
1044 122 0.01
1045 159 0.01
1046 134 0.01
1047 99 0.01
1048 79 0.00
1049 67 0.00
1050 62 0.00
1051 84 0.00
1052 181 0.01
1053 52 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (889 bp):
TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
ACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTC
AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGC
CCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
TCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCC
CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACGAAC
GAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGC
ACCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGCGATCGGGGGGGCCGGGGGGTGTGC
GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
Found at i:16789193 original size:26 final size:26
Alignment explanation
Indices: 16789156--16789205 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
16789146 GTTGACATAA
16789156 GCATACGAAGTTAATTCCCAGTCTCG
1 GCATACGAAGTTAATTCCCAGTCTCG
* *
16789182 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGAAGTTAATTCCCAGTCT
16789206 TAGATCAGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTAATTCCCAGTCTCG
Found at i:16790089 original size:26 final size:26
Alignment explanation
Indices: 16790053--16790103 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
16790043 TTGACTTAGG
16790053 CATACAGAGTTCATTCCGAGTCTAAC
1 CATACAGAGTTCATTCCGAGTCTAAC
*
16790079 CATACAGAGTTCATTCCTAGTCTAA
1 CATACAGAGTTCATTCCGAGTCTAA
16790104 GATCAGACCG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATTCCGAGTCTAAC
Found at i:16791121 original size:185 final size:185
Alignment explanation
Indices: 16790839--16791209 Score: 510
Period size: 185 Copynumber: 2.0 Consensus size: 185
16790829 TTATGGCCGT
* * * * * *
16790839 AGGATCGGCAGCACGTAGAGGGAGACCTGATTGATCCCCTACTTGCGGATCCCGCCCGTCTGCCC
1 AGGATCGACAGCACGCAGAGGGAGACCCGATCGATCCCCTACTTGCGCATCCCGCCCCTCTGCCC
* *
16790904 GATTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTATAA
66 GATTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTATAA
* **
16790969 GCATATGGAGTTCATTCCCATTCTAAGATCGGACCGGACCGAAGGTTGCAGTAGC
131 GCATATGGAGTTCATTCCCAATCTAAGATCGGACCAAACCGAAGGTTGCAGTAGC
* * **
16791024 AGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCC-AGCTTGTGCATCCCGCCCCTCTGGT
1 AGGATCGACAGCACGCAGAGGGAGACCCGATCGATCCCCTA-CTTGCGCATCCCGCCCCTCTGCC
* * ** * *
16791088 CGGTTGAGCGCCCGTACGCTTGTTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
65 CGATTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTATA
* * *
16791153 AGCATATGGAGTTCATTCCCAATGTAAGATCGGACCAAACCGAGGGTTGCGGTAGC
130 AGCATATGGAGTTCATTCCCAATCTAAGATCGGACCAAACCGAAGGTTGCAGTAGC
16791209 A
1 A
16791210 CATGCTGGGC
Statistics
Matches: 161, Mismatches: 24, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
184 1 0.01
185 160 0.99
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (185 bp):
AGGATCGACAGCACGCAGAGGGAGACCCGATCGATCCCCTACTTGCGCATCCCGCCCCTCTGCCC
GATTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTATAA
GCATATGGAGTTCATTCCCAATCTAAGATCGGACCAAACCGAAGGTTGCAGTAGC
Found at i:16791180 original size:26 final size:26
Alignment explanation
Indices: 16791128--16791180 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16791118 GTTGACTTAG
*
16791128 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
16791154 GCATATGGAGTTCATTCCCAATGTAA
1 GCATACGGAGTTCATTCCCAATCTAA
16791180 G
1 G
16791181 ATCGGACCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:16793811 original size:26 final size:26
Alignment explanation
Indices: 16793774--16793826 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16793764 GTTGACTTAG
*
16793774 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16793800 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16793826 G
1 G
16793827 AGTCGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16796499 original size:26 final size:26
Alignment explanation
Indices: 16796463--16796515 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16796453 GTTGACTTAG
*
16796463 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16796489 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16796515 G
1 G
16796516 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16797388 original size:26 final size:26
Alignment explanation
Indices: 16797351--16797403 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16797341 GTTGACTTAG
*
16797351 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
16797377 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
16797403 G
1 G
16797404 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:16798286 original size:26 final size:26
Alignment explanation
Indices: 16798250--16798300 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16798240 TTGACTTAGG
*
16798250 CATACGGAGTTCATTCCCATTCTAAT
1 CATACGGAGTTCATTCCCAGTCTAAT
*
16798276 CATATGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
16798301 GATCGGACGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.25, G:0.14, T:0.33
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAT
Found at i:16800946 original size:26 final size:26
Alignment explanation
Indices: 16800917--16800987 Score: 106
Period size: 26 Copynumber: 2.7 Consensus size: 26
16800907 AGACGTACAG
16800917 AGTTCATTCCCAGTCTAAGCAGACAA
1 AGTTCATTCCCAGTCTAAGCAGACAA
* ***
16800943 AGTTCATTCCCAGTCTAAGCATATGG
1 AGTTCATTCCCAGTCTAAGCAGACAA
16800969 AGTTCATTCCCAGTCTAAG
1 AGTTCATTCCCAGTCTAAG
16800988 ATCAGACCGG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
AGTTCATTCCCAGTCTAAGCAGACAA
Found at i:16802524 original size:26 final size:26
Alignment explanation
Indices: 16802488--16802539 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
16802478 TTGACTTAGT
*
16802488 CATACAGAGTTCATTCCTAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
16802514 CATACAGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
16802540 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAG
Found at i:16803400 original size:26 final size:26
Alignment explanation
Indices: 16803362--16803414 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16803352 GTTCACTTAG
16803362 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16803388 GCATACGGGGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16803414 G
1 G
16803415 ATCGGACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16804301 original size:26 final size:26
Alignment explanation
Indices: 16804261--16804313 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16804251 GTTGACTTAG
*
16804261 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGGTCATTCCCAGTCTAA
16804287 GCATATGGAGGTCATTCCCAGTCTAA
1 GCATATGGAGGTCATTCCCAGTCTAA
16804313 G
1 G
16804314 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATATGGAGGTCATTCCCAGTCTAA
Found at i:16806023 original size:898 final size:900
Alignment explanation
Indices: 16801609--16812442 Score: 12794
Period size: 888 Copynumber: 12.2 Consensus size: 900
16801599 ATCGGTTTAG
* * * * *
16801609 GCATACGAAGTTCATTCCCAATCTAAGATCGGACCGGACCAAGGGTTGCAGCAGCACTTGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * **
16801674 CTCGGGTATGTGTTGGTGCCGTATTTTACTTCGTCGGGGCACCATCGTCGGTGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * * *
16801739 ACCTGACCGACGGTATTGGGGTTCCGACGATCGGGGGGGCCGTGGGGGTGTGCGCTCATGGTGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * **
16801804 TGATGGGTGCTGGTAATTGGCCCTTATATTGGCCCTGTATCCCTCATCAAACCTCGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
16801869 ACCCCCTTAAATAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * * *
16801934 GGGGACACCTTTTCCAAATGGCCACAAAATCTTGTACACTTCAAGTTTTTAGCTAAATTTTTTTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* ** ** * * * *
16801999 TGCATGTCAAGTAAAATACAAGGATCACGTCTACTGAGTTTGGGGGCAAAA-ATCCTTCAAAAAA
391 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTTC-GAAAA
* *
16802063 AATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCT
455 AATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * *
16802128 TGCCATGAAACTTGACGTGAAGGCTTAAGAGACCATTGTATGAGTTTACAAGCCATAAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * **
16802193 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCGTATCGATCCACGATTTGC
585 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
16802258 GCATCCCGTCTCTCTGGCC-AGCGTAGTGCCCGCTCGCTCGCCCGTCCGCTCATTTCGTTGGTTG
650 GCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCG--C-CT-GCCCGCCCGCTCGTTTCGTCGGTTG
* * * * * *
16802322 GCTTAGGCACACGGAGTTTATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGTGGTAGCAGGA
710 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGA
*** * ** * *
16802387 TCGGCAGCACACGGAGGGGGACTCGGTCGATCCACGGCTTGCACATCCCGCCCCTCTGGCCTG-C
775 TCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC-GAC
* * * * *
16802451 TGAGCGCCCACACGCTCGTTTCGTGGATTGACTTAGTCATACAGAGTTCATTCCTAGTCTAA
839 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
16802513 GCATACAGAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAGGGTTGCAGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
16802578 CTCGGGCATGTGCTGGTGTCGTATTTTTCTTCGTCGGGGCACCA---T-----CA-C--CGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
*
16802632 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCTCGGGGGGGTGTGCACACATGATGT
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGC-CGGGGGGGTGTGCGCACATGATGT
* ** * *
16802696 ACGATGGGTGCTGGTACTTGGCAGTTATATTGGCCCCTTATCCCTCATCAAACCTTGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
16802761 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGCTTGCTACCATTAGCCATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
16802826 T-TGG----TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * *
16802886 GTGCACGCCAACAAAAATACAAGGATCATGTCTACCAGGTTTGGGGCAAAAAATTCTTCCGAAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTTCGAAAA
* ** *
16802951 AATTTTAAAAAATC-CTGAACCACAAAAAGTTTTGAAAATCGAGAAAAATAGAAAACGAGTCGTC
455 AATTTTAAAAAATCTC-GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
16803015 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
16803080 CATTGGCATGCAGAAATATGAAGATGCGCCTAAACCCACCTACCATCCTATCGATCCACGGCTTG
584 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
16803145 CGCATCCCGTCTCTCTAGCCGGCGTAGTG--C-TC-ACCCACCCGC-C----CGTCGGTTGGCTT
649 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
** * * * **
16803201 AGATATACGGAGTTCATTCCCAGTCTATGATCAGACTAGACCGAGGGTTGCGGCAGCAGGATCAA
714 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGG
* * * * *
16803266 CAGCATGTAGATGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCGGCGGAGC
779 CAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGC
*
16803331 GCCCGCACGCTCGTTTCGTGGGTTCACTTAGGCATACGGAGTTCATTCCCAGTCTAA
844 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** *
16803388 GCATACGGGGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
16803453 CTCGAGCATGTGCTGGTGTCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * * * * *
16803518 ACCTGACCAGCGGCATTAGGGTTTC-AGCAATCAGAGGGGCCGGGGGGGTGTGCGCACATGATAT
131 ACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * * *
16803582 GCGATGGCTGCTGGTCCTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAGCCTCGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
16803647 CACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
16803712 TGGGGGCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *** * *
16803777 GTGCAT-CCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGAAAAAAACTCCTTCCGAAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTTCGAAAA
* * * * * * * *
16803841 GATTTAAAAAAATCCCAAACTGCAAAAAGTTTCAAAAATCATGAAAAATTGAAAACGAATCGTCT
455 AATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
16803906 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
16803971 ATTGGCA-TTCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACAGCTTG
585 ATTGGCACGT-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
16804035 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTT
649 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * ** *
16804100 AGGCATACAGAGTTCATTCCCAGTCTAAGATTAGATCGGA-TCGAGGGTTATGGTAGCAGGATCG
714 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGCGGCAGCAGGATCG
* * * * ** ** *
16804164 ACAGTACATAGAGGGGGACCCAATTGATCCCCGGCTTGCGCATCTGGCCCCTCTGGCCAACTGAG
778 GCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAG
*
16804229 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
843 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
16804287 GCATATGGAGGTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * *
16804352 CTTGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCAACGTCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * *
16804417 ACCTGACCGGCGGCATTGGGGTTCCAACGATCGAGGGGACC-GGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * *
16804481 CGATGGGTTCTGTTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
16804546 ACCCCCTGAAAGAGCATTTGAGATGTTATAGGTTTGCTGCCAATAGCCATTAAAGTGTCTG--A-
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
16804608 ----A-A-----TT---A---TCGCAAAATCTTGTACACTTCGAGTTTTTA-CGTGAATTTTTTT
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC-TGAATTTTTTT
* * * *
16804656 GTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAC-TCCTTCTGACA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTTC-GAAA
* * *
16804720 AAATTTTAAAAAATCCCCG-ACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
454 AAATTTTAAAAAAT-CTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* * *
16804784 CTTGCCACGAAACTTCACGTGAAGGGTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATG
518 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * **
16804849 GCATTGGCACGCAGAAATATGAAGATGTGCCAAAACACACCTACCACCCTATCGATACACAACTT
583 GCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
16804914 TCGCATCCCATCTCTCTGGCCGACGTAGTGCCTGCCCGCTCGCCCGCCCAGCCGCTCGTTTCGTA
648 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCC--CGC-CT-GCCCG--C--CCGCTCGTTTCGTC
** * * ** ** * *
16804979 AATTGGCTTAGGCTTATGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCAAAGGTTGTGGCAG
705 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAG
* * * * * *
16805044 CAGGATCGACAGCACATAGAGGGGGACTCGGCCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGT
770 CAGGATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * * * ** * *
16805109 CGTCTGAGCGCCCGCACGGTTGTTTTGTGCATTAACTTAGGCATACGGAGTTCATTCCCAATCTA
835 CGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
16805174 A
900 A
** * ** * *
16805175 GCATACAAAGTTCATTCCCAGTCTAAGATCAGACCGGACTAAGGGTTGCGACGGCACAT-CTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * * **
16805239 CTTGGGCATGTACTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCTTCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * *
16805304 ACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGGGTGTGTGCCCATGATGT
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGGTGTGCGCACATGATGT
* * **
16805369 GCGATGGGTGCTTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCCAACCTTAAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
16805434 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * **
16805499 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGATTTTTTAGTTGAATTCCTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * ** * *
16805564 ATGCATGTCAACAAGAATACAAGG-TCACGTCTAATACGTTTGGGGCCAAAACTTTTTTCGAAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTTCGAAAA
* * ** *
16805628 AATTTTAAAAAATCCCAAACCGCAAAAAGTTTTGAAAATCGTTAAAAATAGAAAACGAGTCGTCT
455 AATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * **
16805693 TGCCATGAAACTTCACG-CAAGGCTTAAGGGACCATTGTATGAATTTACAAGGCATAAAAACAGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** * * *
16805757 ATTCACACATAGAAATATGAAGATGTCCCTAAACCCACCTACCACCAC-ATCGATCCACGGCTTA
585 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACC-CTATCGATCCACGGCTTG
16805821 CGCATCCCGTCTCTCTGGCCGGA-GTAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCT
649 CGCATCCCGTCTCTCTGGCC-GACGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * *
16805885 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGACAGTAGGATCG
713 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCG
* ** * **
16805950 ACAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCTTGCCCCTCTGGTCGACAAAG
778 GCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAG
* * * *
16806015 TGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGAAGTTCATTCCCAGTCTAA
843 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
16806073 GCATATGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGTTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * *
16806138 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGTTGAAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * *
16806203 ACCTGACTGGCGACATTGGGGTTCCGACGATCGGGGGGGCCAGGGGTGGTGTGCACACATGATGT
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGGTGTGCGCACATGATGT
* * *
16806268 GGGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
16806333 CA-CCCCTTAAATAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
16806397 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCAGAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
** * * ** * *
16806462 GCCCATGCCAACAAGAATACAGGGATCACGTCTAATATGTTTGGGGCCAATGTAC--CTTTCGAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA--AACTTCTTTCGAA
** * *
16806525 AAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCGTCAAAAATAGAAAACGATTCGT
453 AAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
*
16806590 CTTGCCATGAAACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
518 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
16806655 GCATTGGCACGTAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACCGCTT
583 GCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * ** * *
16806720 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCGCCCACCCACCCGCCCGTTCATTTCGTCGGTT
648 GCGCATCCCGTCTCTCTGGCCGACGTA--G-T-GCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTT
* * * **
16806785 GGCTTTA-GCATACAGAGTTCATTCCCAGTCTAAGATTAG-CTCAGACCGAGGGTTGCAACAGCA
709 GGC-TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC-CAGACTGAGGGTTGCGGCAGCA
* ** * * * * * *
16806848 GGATCGGTAGCACGCCGAGGGGGACTCGGCCGATCCCCGGCTTACGCATCTCGCCCCTCTAGTCG
772 GGATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
** * * *
16806913 GTTGAGCGCCCGCACTCTCGTTTCGTGGGTTGACTTAGGCATAAGGAGTTCATTCCCTGTCTAA
837 ACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
16806977 G-AT-C-G-G---A----C---C-AA-AT----------CGAGTGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
16807016 CTCGAGCATGTACTGGTGCTGTAATTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* *
16807081 ACCTGACCGGCGGCATTGAGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * * *
16807145 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCCAACCTTGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
16807210 ACCCCCTTAAGGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
16807275 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTA
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * *
16807340 TGCATGCCAACAAGAATACAAGGACCACGTCTAACAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
391 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTTCGAAAAA
* * ** * * *
16807405 ATTTTAAAAAATCTCAAACAGCAAAAAGTTTTGAAAATCCTTAAAAATAGAAAATGAGTCGTCTT
456 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * * *
16807470 GCCATGAAATTTCACGTCAAGGCTTTAGGGACCATTGTATGAATTTACAAGGCATAAAAATGGCA
521 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
16807535 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCATACCGATCCACGGCTTGCG
586 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
16807600 CATCCCGTGTCTCTGGCCAACGTAGTGCCCGCCCGCCTGCCCGCCCGCTCGTTTC-TCTGGTTGG
651 CATCCCGTCTCTCTGGCCGACGTAGT----GCCCGCCTGCCCGCCCGCTCGTTTCGTC-GGTTGG
* * ** * *
16807664 CTTAGGCATACGAAGTTCATTCCTAGTCTAAGATCAGGTCAGACCGAGGGTTGCGGTAGCAGGAT
711 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGAT
* * * * * * * *
16807729 CGGCAGCACGCAGAGGGGGACCAGACCGATCCACGACTTGCACATCCTGCCCCTTTGGCCGGCTG
776 CGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTG
* * *
16807794 AGCACCCGCATGCTCGTTTC--------A--T-GG-GT-C-GA---C-TT---AG-C--A
841 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
16807830 -TAT-C-GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTCGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
16807892 CTCGGGCATGTCCTGGTGTCGCA----T-TT--T----------TC-T-------TCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
** * * * *
16807932 ACCTGACCGGCGGCATAAGGGTTCCGACGATTGAGAGGGCC-GGGGGGTGTGCGCACATGATGCG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * * *
16807996 CGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCTTCATCAAATCTTGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * ** *
16808061 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCTAGTTGTTACTAAAGTGTCTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
16808126 GGGGGCACTTTTTTCGAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTATTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
16808191 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCATGTTT-TGGCCAAAACTCCTTTCAAAAAA
391 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTTCGAAAAA
* * * *
16808255 ATTTTAAAAAATCCCGAACCGCAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTT
456 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
16808320 GCCATGAAACTTCACGTGAAGGATTAAGGGACCATTGTATGAATTTACGAGCCATAAAAATGGCA
521 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
16808385 TTGCCACATAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCTCGGCTTGCG
586 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
16808450 CATCCCATCTCTTTGGCCGACGTAGTGCCCGCCCGCCCGTCTGCTCGTTTCGTCGGTTGGCTTAG
651 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * *
16808515 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-TCAAGGGTTGGGGCAGTAAGATCGGC
716 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGCGGCAGCAGGATCGGC
* * * * * * *
16808579 AGCACGCAGAGGGGGACCTGACCGATCCCCGACTTACACATCCCACACCTCTGGCCGACTGAGCG
780 AGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCG
* * *
16808644 CCCACACGCTTGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
845 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * * * *
16808700 GCATACGGAGTTCATTCTCAGTCTAAGATTTGACCGGACTGAGCGTTGCGGTAGCACATGCTGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
16808765 ATCGGGCATGTG-TCGGTGCCGCATTTTTCTTCGCCGGGG---CA-C--C---G--TCGTCGGAT
66 CTCGGGCATGTGCT-GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
* * * * *
16808818 AACCTTACCGGCGACATTGGGGTTCCGACAATCGAGGGGGCCGGGGGGGGTGTGCGCACATAATG
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGGTGTGCGCACATGATG
* *
16808883 TGTGATGGGTGCGGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
16808948 ACACCCCCTTAAAGAGCATTTGAGATTCTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
16809013 ATGGGGACACTTTTTTCTAATGGTCACAAAATCTTGTACACTTCGAGTTTTTCGCTGAATTCTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * *
16809078 TGTGCATAG-CAAAAAAAATACAAGGATGAAGTCTACCAAGTTTGGGGCCAAAA-ATCCTTCTGA
389 TGTGCAT-GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTTC-GA
* * * *
16809141 AAAAAGTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTTG
452 AAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* *
16809206 TCTCGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAAT
517 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * * *
16809271 GGCATTGGAATGCAGAAATATGAAGATGTGCCTAGATCCACCTACCACCCTATCGATCCACGGCT
582 GGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * *
16809336 TACGCATCCCGTCTCTTTGGCCGACGTAATGCCCG-CTCGCCCGCCCGCTCGTTTCATTGGTTGG
647 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCT-GCCCGCCCGCTCGTTTCGTCGGTTGG
** * * *
16809400 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTACGGTAGCAAGAT
711 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGAT
* * * * * *
16809465 TGGCAGCACGTAGAGGGGGACCC-AGCCAATCCCTGGCTTGTGCATCCTGCCCCTCAT-G-TG-C
776 CGGCAGCACGTAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTC-TGGCCGAC
* * *
16809526 TGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCTTTCCCAATCTAA
839 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * **
16809588 GCATACGAAGTTCATTCCCATTCTAAGATCGGACTAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
16809653 CTCAGGCATGTGCTGGTGCTGCATATTTCTTCGTCGGGGCACCATCGTC-G-G-A----C----A
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
** * * * *
16809707 ACCTGACCGATGACATTAGGGTTCCGACGATCTGGGGGGTC-GGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* *
16809771 CGATGGGTGCTGGTACTTGACCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCTC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
16809835 ACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCAGACAGTAGCCATTAAAGTGTCT-AAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
16809899 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACGCTACGAGTTTTTATCTGAATTTGTTTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
16809964 TGCATGCCAACAAAAATACAAGGATCATGTCCACCAAGTTTGGGGCCAGAAC-TCCTTCCAAAAA
391 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTTCGAAAAA
** * * * * *
16810028 GGTTTAAAAAATCTTGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAAAAAATGAGTCATCTT
456 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* **
16810093 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGATTTTACTTGCCATAAAAATGGCA
521 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
16810158 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACACGGCTTGTG
586 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
16810223 CATCCCGTCTCTCTGGCC-AGCGTAATGCCTACCCGCCCGCCTGCCTGCCCACTCGTTTCGTCGG
651 CATCCCGTCTCTCTGGCCGA-CGT-A-G--T----GCCCGCCTGCCCGCCCGCTCGTTTCGTCGG
* * * * * *
16810287 TTGGCTTAGGCATACGGAGTTCATTCTCAGTCTAAGATCGGATCGGACTGAGGGTTACGGTAGCA
707 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCA
* * * *** * * *
16810352 AGATCGACAGCACGTAGAGTGGGACCCGACCGATCCTTAGATTGCGCATCCTGCCCCTCTGGCTG
772 GGATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
*
16810417 ACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
837 ACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
16810481 GCATACGTAGTTCATTCCCAGTCGAAGATCGGACCGGACCAAGGGTTGCGGCAGTAGAGGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * **
16810546 CTCGAGCATATGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * *
16810611 ACCTGACCGGTGGCATTGGGGTACCGACGGCATTGGGGTTCCGAATATCAAGGGGCCGAGGGGGG
131 ACCTGACCGGCGGCATTGGGGTTCCGAC-G-A-T-CGG----G--------GGGGCCG-GGGGGG
*
16810676 TGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
179 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * *
16810741 AAACCTCGAGAACTCACACCCGCTTAAAGAGCATGTGAGATTTTACAGGTTTGCTGCTAGTAGCC
244 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* *
16810806 ATTAAAGTGTCTGAAATGGGGACACTTCTTTCAATTGGTCACAAAATCTTGTACACTTCGAGTTT
309 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * *
16810871 TTAGCTGAA-TTTTTTGTGCATAGCCAAAAAAAAAATACAAGGATGATGTCTACCCAAGTTTGGG
374 TTAGCTGAATTTTTTTGTGCAT-GCC--AACAAAAATACAAGGATCACGTCTA-CCAAGTTTGGG
* * * * * * *
16810935 GCCAAAAGTCCTTCCGAAAAAAGTTTAAAAAATCACAAACCGTAAAAAGTTTCAAAAATCGTGAA
435 GCCAAAACTTCTTTCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAA
* * * *
16811000 AAATAGAAAATGAGTCGTCTTGCCATGAACCCTCACGTGAAGGCTTAAGGGACCATTGTATCAAT
500 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* *
16811065 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
565 TTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * * * * * *
16811130 TCTATCGATCCATGGCTTACACATCCCATCTCTCTGGCCGGCGTAGTG--C-CC-GCCCACTCGC
630 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCCCGC
* * * * * *
16811191 TCGTTTCATCGGTTGGCTTAGGCATAGGGAGTTCATTCTCA-TCTCAGATCGGACC-GAACTAAG
695 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACTGAG
* * * * * *
16811254 GGTTGCGACAGTAGGATGGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGACTTACGCCTCCC
759 GGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCC
* * * *
16811319 GCCCCTCTGGCCGACTGAGCACCCGCACGTTCATTTCATGGGTTGACTTAGGCATACGGAGTTCA
824 GCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
*
16811384 TTCCCAGTCCAA
889 TTCCCAGTCTAA
* * * * * * *
16811396 GCCTACGAAGTTCATTCCCAATCTAAGATCGGACTGGACC-AGGTGTTACGGTAGCACATACTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGG-GTTGCGGCAGCACATGCTGG
* * ** * ** * *
16811460 GCTCGTGCATGTGCTTGTGCCATATTTTTCTTCGTCGGGGCACTATCACCGAAGCATCGTCAGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
* * *
16811525 AACCTGACCGGTGGCATTGGGGTTCCGACGATC-GCGGGGCC-GGGGGGTGTGTGCACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * * *
16811588 GCGATGGGCGCTGGTACTTGGCCCTTTTATTGGCTCCCTATCCCTCATCAAACCTCAAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
16811653 CACCTCCTCAAAGAGCATTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
260 CACCCCCTTAAAGAGCA-TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
16811718 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
16811783 TGTGCATGCCAACAAAAATACAAGGATCACGGCCACCAAGTTTGGGGCCAAAAC-TCCTTCCAAA
389 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTTCGAAA
* ** * * * *
16811847 AAAGTTTAAAAAATCTCGAACCATAAAATGTTTTAAAAATCGTGAAAAATAGAAAATGAGTCATC
454 AAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
16811912 TTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
16811977 CATTGGCACGTAGAAATATGAAGCTGTGCCTAAACCCACCTAACACCCTATCGATACACGGCTTG
584 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* ** *
16812042 CGCATCCCGTCTCTCTGGCCTG-CGTAGTGCCCGCCCGCTAGCCCGCTCGTTTCGTCGATTGGCT
649 CGCATCCCGTCTCTCTGGCC-GACGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * ** * ** *
16812106 TAGGCATACAGAGTTCATTCCTAGTCTAAGATTGGACCGGACTGAGGGTTGCAACAGCAGGATCC
713 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCG
* * * * *
16812171 GTAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCACATCCCGCCCCTCTGGCCGGCTGAG
778 GCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAG
* * * *
16812236 CGCCCGCACGATCGTTTCTTGGGTTGATTTAGGCATACAGAGTTCATTCCCAG--T--
843 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
16812290 -C-TA---AG---ATT----G-----GATCGGACC-GA-TGA---TTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* **
16812333 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * *
16812398 ACCTGACCGACGACATT-GGGTTTCGACGATC-GGGGGGTCGGGGGG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGG
16812443 TNNNNNNNNN
Statistics
Matches: 8576, Mismatches: 1102, Indels: 536
0.84 0.11 0.05
Matches are distributed among these distances:
846 154 0.02
847 2 0.00
850 217 0.03
851 278 0.03
853 5 0.00
854 2 0.00
855 1 0.00
856 2 0.00
857 3 0.00
858 2 0.00
859 5 0.00
860 3 0.00
861 1 0.00
863 3 0.00
864 3 0.00
865 3 0.00
866 4 0.00
867 3 0.00
868 1 0.00
869 2 0.00
870 1 0.00
871 23 0.00
872 97 0.01
873 67 0.01
874 2 0.00
875 270 0.03
876 132 0.02
877 529 0.06
878 122 0.01
879 50 0.01
880 251 0.03
881 3 0.00
882 5 0.00
883 204 0.02
884 119 0.01
885 90 0.01
886 231 0.03
887 151 0.02
888 704 0.08
889 385 0.04
890 588 0.07
891 201 0.02
892 19 0.00
893 544 0.06
894 29 0.00
895 24 0.00
896 102 0.01
897 148 0.02
898 653 0.08
899 609 0.07
900 125 0.01
901 4 0.00
902 8 0.00
903 6 0.00
904 313 0.04
905 5 0.00
906 123 0.01
907 103 0.01
908 61 0.01
910 1 0.00
912 2 0.00
913 1 0.00
914 5 0.00
915 265 0.03
916 45 0.01
917 2 0.00
918 1 0.00
920 6 0.00
922 53 0.01
923 96 0.01
924 60 0.01
926 23 0.00
927 18 0.00
928 203 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (900 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTTCGAAAAA
ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCA
GCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:16806077 original size:26 final size:26
Alignment explanation
Indices: 16806047--16806099 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16806037 GTTGACTTAG
16806047 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATATGAAGTTCATTCCCAGTCTAA
*
16806073 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGAAGTTCATTCCCAGTCTAA
16806099 G
1 G
16806100 ATTGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATATGAAGTTCATTCCCAGTCTAA
Found at i:16808710 original size:26 final size:26
Alignment explanation
Indices: 16808674--16808726 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16808664 GTTAACTTAG
16808674 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16808700 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16808726 G
1 G
16808727 ATTTGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16809599 original size:26 final size:26
Alignment explanation
Indices: 16809562--16809614 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16809552 GTTGACTTAG
* *
16809562 GCATACGGAGTTCTTTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
16809588 GCATACGAAGTTCATTCCCATTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
16809614 G
1 G
16809615 ATCGGACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:16810079 original size:26 final size:27
Alignment explanation
Indices: 16810022--16810080 Score: 66
Period size: 26 Copynumber: 2.2 Consensus size: 27
16810012 GAACTCCTTC
* **
16810022 CAAAAAGGTTTAAAAAATCTTGAACCA
1 CAAAAAGGTTTAAAAAATCGTGAAAAA
*
16810049 CAAAAA-GTTTCAAAAATCGTGAAAAA
1 CAAAAAGGTTTAAAAAATCGTGAAAAA
*
16810075 TAAAAA
1 CAAAAA
16810081 ATGAGTCATC
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 21 0.78
27 6 0.22
ACGTcount: A:0.58, C:0.12, G:0.10, T:0.20
Consensus pattern (27 bp):
CAAAAAGGTTTAAAAAATCGTGAAAAA
Found at i:16810642 original size:17 final size:17
Alignment explanation
Indices: 16810622--16810654 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
16810612 CCTGACCGGT
16810622 GGCATTGGGGTACCGAC
1 GGCATTGGGGTACCGAC
*
16810639 GGCATTGGGGTTCCGA
1 GGCATTGGGGTACCGA
16810655 ATATCAAGGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.21, G:0.42, T:0.21
Consensus pattern (17 bp):
GGCATTGGGGTACCGAC
Found at i:16814171 original size:26 final size:26
Alignment explanation
Indices: 16814134--16814186 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16814124 GTTGACTTCG
16814134 GCATACCGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
16814160 GCATA-CGTAGTTCATTCCCAGTCTAA
1 GCATACCG-AGTTCATTCCCAGTCTAA
16814186 G
1 G
16814187 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 2 0.08
26 24 0.92
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCCAGTCTAA
Found at i:16815085 original size:26 final size:26
Alignment explanation
Indices: 16815033--16815085 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16815023 GTTGACTTAG
* * * *
16815033 GCATACGGAGTTCATTCCTAGTTTAA
1 GCATACAGAGTTCATTCCCAATCTAA
16815059 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
16815085 G
1 G
16815086 ATCAGACCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:16817733 original size:26 final size:26
Alignment explanation
Indices: 16817697--16817749 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16817687 GTTGATTTAG
*
16817697 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTAATTCCCAGTCTAA
*
16817723 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACAGAGTTAATTCCCAGTCTAA
16817749 G
1 G
16817750 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTAATTCCCAGTCTAA
Found at i:16818456 original size:893 final size:892
Alignment explanation
Indices: 16813452--16818664 Score: 5650
Period size: 902 Copynumber: 5.8 Consensus size: 892
16813442 NNTGCGCTCG
* * *
16813452 TGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCGTATC-CATCATCAAACCTAGA
1 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCGC-TCATCAAACCTTGA
*
16813516 GAACTCACACCCCCTTAAAGAGCATTCGAGATTTTTACAGGTTTGCTGCCAGTAGCCATTTTAAA
65 GAACTCACACCCCCTTAAAGAGCATTTGAGA-TTTTACAGGTTTGCTGCCAGTAGCCA--TTAAA
*
16813581 GTGTCTGAAATGGGGACAC-TTTTTC-AATGGTCACAAAATTTTGTACACTTCGAGTTTTTAGCT
127 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* * *
16813644 GAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTC
192 GAA-TTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* * * *
16813709 CTTTCGAAAAAATTTTAAAAAATCCCGAACTG-AAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
256 CTTCCGAAAAAATTTT-AAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAA
* *
16813773 CGAGTTGTCTTGCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
320 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
*** *
16813838 TAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGATC
385 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * * *
16813903 CACGGCTTGCGCATCTCGTCTCTCTGGCCGGCGTAGTGCCCGTCC-ACC-C-GCTCATTTCGTCG
450 CACGGCTTGCCCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTGCTCGTTTCGTCG
* * *** * *
16813965 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATGGGACCAGACCGAGGGTTGTGGCAGC
515 ATTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATTGGATTGGACTGAGGGTTGCGGCAGC
* ** * * * * * *
16814030 AAGATCGATAGCATGCAGAGGGGGACCCGGTCGATCCCTCG-CTTGCGCATCCCTCCCCTCTGGT
579 AGGATCGGCAGCACGTAGAAGGGGACCCGGCCGATCCC-CGACTTGCGCATCCCGCCCCTCTGGC
* * * * * *
16814094 CGGCTGAGCGCCCGGACGTTCGTTTCGTGGGTTGACTTCGGCATACCGAGTTCATTCCCAGTCTA
643 CGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * * * *
16814159 AGCATACGTAGTTCATTCCCAGTCTAAGATTGGACCGGACCAAGGGTTGCGGCAGCATATGCTGG
708 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGA-CGAGGGTTGCGACAGCACATGCTGG
* ** * * * *
16814224 GCTTGGGCATGTG-CTGGTGCCGCATTGTTCTTTGCCGGGGCACCATAAC-T-GGAGCATCACCG
772 GCTCGGGCATGTGTCTGGTGCTACATTTTTC-TTCCCGGGG-ACCAT--CGTCAGAGCATC-TCG
** * * * * * * *
16814286 GAGAATATGACCGATGGCATAGGGGTTCCGACGATCGGGGGGTCGGGGGGGTGTGCACCCA
832 GAGAACCTGACCTACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCACACA
* * *
16814347 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTCGAG
1 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCGCTCATCAAACCTTGAG
* * *
16814412 AACTCACACCCCTTTAAAGAGCATTTGACATTTTAAAGGTTTGCTGCCAGTAGCCATTAAAGTGT
66 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * * * * *
16814477 TTGAAATTGGGATAGTTTTTTCGAATGGTCACAAAATTTTGTACACTTCGAGTTTTTAGCTGAAT
131 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-
* * * * * *
16814542 TTTTTTGTGCATGCCAACAAAAATACAGGGATCACGTCTAGCAAGTCTGGGGGCAAAACTTCTTC
195 TTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * * * *
16814607 CAAAAAAAGTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAAAAAACGTG
260 CGAAAAAA-TTTTAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAG
* * *
16814672 TCTTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGATTTTACAAGCCATAAA
324 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
16814737 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
389 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* ** * * * *
16814802 GCTTGCACATCCCGTCTCTCTGGCCGATGTAGTGCCCACCTGCCCACTCGCTCGTTTCATCGATT
454 GCTTGCCCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCT-GCTCGTTTCGTCGATT
* ** *
16814867 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA--CAACATCGAGGGTTGCGGTAGCA
518 GGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATTGGATTGGAC-T-GAGGGTTGCGGCAGCA
*** * * * * * * *
16814930 GGATCTATAGCATGCAGAGGGGGACCCCGCTGATCCCCGGCTTGCGCATCCAGCCCCTCTGGCCG
580 GGATCGGCAGCACGTAGAAGGGGACCCGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCG
* * * * * *
16814995 GCTGAGCGCCCGGACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTTTAAG
645 ACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * *
16815060 CATACAGAGTTCATTCCCAATCT-A-A---GATC--A-GA------C--C-G---ATGCTGGCCT
710 CATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACGAGGGTTGCGACAGCACATGCTGGGCT
** * ** * * *
16815105 CGGGCATGTG-CTGGTGCCGCATTTCTC-TCCGTCGGGGCACCATCACCGGAGCATCACCGAAGA
775 CGGGCATGTGTCTGGTGCTACATTTTTCTTCC--CGGGG-ACCATCGTCAGAGCATC-TCGGAGA
* * * * * *
16815168 ACCTGA-CTGGCGGCGTT---GTTCTGGCCATCGAGGGGGGCCAGGAGGGGTTTGCGCACA
836 ACCTGACCT-ACGGCATTGGGGTTCCGGCGATCG-GGGGGGCC-GG-GGGGTGTGCACACA
* * **
16815225 TGATGTGTGAT-GG-G-T-G--C-T-G--C---TATTGGCCCCCTATCCCTCATCAAACCTCAAG
1 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCGCTCATCAAACCTTGAG
* *
16815277 AATTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGATGCCAGTAGCCATTAAAGTGT
66 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
** * * *
16815342 CCAAAATGGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAGTTTTTATCTAAAT
131 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-
* * *
16815407 TTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTATCCAAGTTTGGGGCCAAAA-TCATT
195 TTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTA-CCAAGTTTGGGGCCAAAACTCCTT
* * *
16815471 CC-AAAAACAGTTTAAAAAATCC-GAACTGGTAAAAAGTTTCAAAAAATCATGAAAAAT-AAAAA
259 CCGAAAAA-A-TTTTAAAAATCCTGAAC-CGTAAAAAGTTTC-AAAAATCGTGAAAAATAAAAAA
* * * *
16815533 CGAAGTTGTTTTGCCAGTGAAACCTTCACTGTGAAAGCTTAAGGGACCATTGTAAGAATTTAACC
320 CG-AGTCGTCTTGCCA-TGAAA-CTTCAC-GTGAAGGCTTAAGGGACCATTGTATGAATTT-A--
*
16815598 CAAGCCATAAAACATGGCAATTGGCAACATGGGCCAGAAATATGGACGATGGTGCCCTAAAACCA
378 CAAGCCATAAAA-ATGGC-ATTGG---CAT--G-CAGAAATAT-GAAGAT-GTG-CCT-AAACC-
* * * *
16815663 CACCTACCA-CCTAAATCGATTCCATCGGCTTACGCAT-CCGTCTCTCTAGCCAGCGTAGTGCTC
430 CACCTACCACCCT--ATCGA-TCCA-CGGCTTGCCCATCCCGTCTCTCTGGCCGGCGTAGTG--C
* * *
16815726 GCCAGCCC-CACTTCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
489 -CC-GCCCGC-C--CG-CTGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATT-CCAGTC
* * ** * * * * * *
16815790 TATGATTGGCTCAGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGTTGAGGGGGACCCGGTCG
547 TAAGATTGGATTGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAAGGGGACCCGGCCG
* * * * ** * * * * *
16815855 ATCCCCGGCTTGCACATACAGCCCCTCTGGTTGGCTGAGCGCCTGCACGCTCGTTTTGTGAGTTG
612 ATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTG
* * *
16815920 ACTTAGGCATACGGAGTTCATTCTCAATCTAAG-GT-C-G-G---A---CC---C---GA-C---
677 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
*
16815965 T-----GAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGT-TCTGGTG-TAGTATTTTTCTTT
742 TCAGACGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGTCTGGTGCTA-CATTTTTC-TT
* * * * *
16816023 GCCGGGGCACCATCGTCGGGGCATCGTCGGAGAACTTGACCGACGGCATTGGGGTTCCGGCGATC
805 CCCGGGG-ACCATCGTCAGAGCATC-TCGGAGAACCTGACCTACGGCATTGGGGTTCCGGCGATC
16816088 GGGGGGGCCAGGGGGGTGTGCACACA
868 GGGGGGGCC-GGGGGGTGTGCACACA
* * *
16816114 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAG
1 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCGCTCATCAAACCTTGAG
* *
16816179 AAGTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGTGT
66 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
*
16816244 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCGAGTTTTTAGCTGAAT
131 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-
* ** * *
16816309 TTTTTTGTGCATACCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAGCCTCATTT
195 TTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * *
16816374 C-AAAAAATTTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCCTGAAAAATAGAAAACAA
260 CGAAAAAA-TTTT-AAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGA
* *
16816438 ATCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAA
323 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
*
16816503 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCGCACCTACCACTCTA-CGATCCC
388 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC-CACCTACCACCCTATCGAT-CC
* * *
16816567 ACGGCTTGCCCCGCTTCCCG-CTCTCTGGTCGGGCGTAGTTGCCCGCCCCGCCTCGCACGCTCGT
451 ACGGCTTG--CC-CATCCCGTCTCTCTGG-CCGGCGTAG-TGCCCG-CCCGCC-CGC-TGCTCGT
* * * *
16816631 TTTGTC-AGTTGGCTTAGGCATACGGAGTT-ATTTACTAGTCTAAGATTGAATTAGACTGAGGGT
508 TTCGTCGA-TTGGCTTAGGCATACGGAGTTCA-TT-CCAGTCTAAGATTGGATTGGACTGAGGGT
* ** * ** ** * *
16816694 TGCGGTAGCAGGATCGATAGCACGTAGATGGGGACCCGGTTGATCCCC-AGCTTATGCATACCAC
570 TGCGGCAGCAGGATCGGCAGCACGTAGAAGGGGACCCGGCCGATCCCCGA-CTTGCGCATCCCGC
* * * **
16816758 CCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTTGTGTGTTGACTTAGGCACACGGAGTTTGTT
634 CCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
* * **
16816823 CCCAGTGTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTATGACAGC
699 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGA-CGAGGGTTGCGACAGC
* *
16816888 ACATGCTGGGCTCGGGCATGTGCTGCTGGTGCTGCATTTTTCTTCGCTGGGG--CA-C--CA-A-
763 ACATGCTGGGCTCGGGCATGTG-T-CTGGTGCTACATTTTTCTTC-CCGGGGACCATCGTCAGAG
* * * * * * * *
16816946 C-GC-CGAAAAACCTGACCGGTGGCGCCGTTGGGCTTCCGACGATCGGGGGGGCCGAGGGGGTGT
825 CATCTCGGAGAACCTGACC--T-ACGGCATTGGGGTTCCGGCGATCGGGGGGGCCG-GGGGGTGT
*
16817009 GCGCACA
886 GCACACA
* * * *
16817016 TGATGTGCGATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCTTATCGCTCATCAAA-ATTCAA
1 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCGCTCATCAAACCTT-GA
* *
16817080 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTGGCTATTAAAGTG
65 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* * * *
16817145 TCTGAAATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTCTTAGCTAAA
130 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-GA
* * * * * *
16817210 ATTTTTTGCGCAAGCCAACAAAAATA-AGAGGATCATGTCTACCAAGTTTGGGGCTAAAAATCCT
194 ATTTTTTGTGCATGCCAAAAAAAATACA-AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
* * *
16817274 TCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAGGTTTCCAAAATCGTGAAAAATAAAAAACG
258 TCCGAAAAAATTTT-AAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACG
* *
16817339 AGACGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATA
322 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
*
16817404 AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCA
387 AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* *
16817469 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCCTAGTGCCCGCCCG-CCGCT--T-GTTTCGTCGAT
452 CGGCTTGCCCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTGCTCGTTTCGTCGAT
*
16817530 CGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGATTGGACTGAGGGTTGCGGCAGCAG
517 TGGCTTAGGCATACGGAGTTCATTCC-AGTCTAAGATTGGATTGGACTGAGGGTTGCGGCAGCAG
* * *
16817595 GATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGG
581 GATCGGCAGCACGTAGAAGGGGACCCGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGA
* *
16817660 CTGAGCACCCGCACGCTCGTTTCGTGGGTTGATTTAGGCATACAGAGTTCATTCCCAGTCTAAGC
646 CTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* *
16817725 ATACGGAGTTAATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGACAGCACATGCTGGGCT
711 ATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGA-CGAGGGTTGCGACAGCACATGCTGGGCT
* * *
16817790 CGGGAATGTGT-TGGTGCCACATTTTTCTTCATCGGGGTACCATCGTCAGAGCATCATCGGAGAA
775 CGGGCATGTGTCTGGTGCTACATTTTTCTTC-CCGGGG-ACCATCGTCAGAGCATC-TCGGAGAA
*
16817854 CCTGACCTACGGCATTGGGGTTCCGGCGATC-AGGGGG-CGGGGGGTTGTGCACACA
837 CCTGACCTACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGG-TGTGCACACA
*
16817909 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCGCTGATCAAACCTTGAG
1 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCGCTCATCAAACCTTGAG
* *
16817974 AACTCACACCCCCTTAAAAAGCATTTTAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
66 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* *
16818039 CTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTCGAGTTTTTAGCTGAAT
131 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
** *
16818104 TTTTT-TGCATGCCAAGTAAAATACAAGGATCACGTCTTCCAAGTTTGGGGCCAAAACTCCTTCC
196 TTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * * * * *
16818168 GAAAAAATTTT-AAAATCATGAATCGCAAAAAGTTTTAAAAATCGTGAAAAATATAAAATGAGTC
261 GAAAAAATTTTAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTC
* *
16818232 ATCTTGCCATGAAACTTGACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
326 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
** * * * *
16818297 TGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCAATCCATGAC
391 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * *
16818362 TTGCCCATCCTGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGTCTGCTCATTTCGTCGATTGG
456 TTGCCCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-CTGCTCGTTTCGTCGATTGG
* * * ** * ** *
16818427 CTTAGGTATACGAAGTTCATTCCAGTCTAAGATCGGACCGGACTGAGGGCTATGGCAGAAGGATC
520 CTTAGGCATACGGAGTTCATTCCAGTCTAAGATTGGATTGGACTGAGGGTTGCGGCAGCAGGATC
* ** *
16818492 AGCAGCACGTAGAAGGGGAATCGGCCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGACTGA
585 GGCAGCACGTAGAAGGGGACCCGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGACTGA
** * * * *
16818557 GTGCTCGCATGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAGCATAT
650 GCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
*
16818621 GGAGTTCATTCCCAGTCTAAGATCGAAGT-AGACCGAGGGTTGCG
715 GGAGTTCATTCCCAGTCTAAGATCGGA-TCAGA-CGAGGGTTGCG
16818665 CCCGCAAGCT
Statistics
Matches: 3691, Mismatches: 451, Indels: 355
0.82 0.10 0.08
Matches are distributed among these distances:
864 9 0.00
865 220 0.06
866 38 0.01
867 5 0.00
868 7 0.00
869 27 0.01
870 2 0.00
871 1 0.00
872 13 0.00
873 5 0.00
874 6 0.00
875 11 0.00
876 12 0.00
877 8 0.00
878 89 0.02
879 2 0.00
880 19 0.01
881 190 0.05
882 14 0.00
883 31 0.01
884 26 0.01
885 16 0.00
886 11 0.00
887 53 0.01
888 78 0.02
889 226 0.06
890 269 0.07
891 85 0.02
892 89 0.02
893 512 0.14
894 199 0.05
895 312 0.08
896 10 0.00
897 13 0.00
898 58 0.02
899 226 0.06
900 5 0.00
901 73 0.02
902 649 0.18
903 12 0.00
904 1 0.00
906 1 0.00
907 36 0.01
909 3 0.00
910 18 0.00
911 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (892 bp):
TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCGCTCATCAAACCTTGAG
AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
TTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
GAAAAAATTTTAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTC
GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
TTGCCCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTGCTCGTTTCGTCGATTGGC
TTAGGCATACGGAGTTCATTCCAGTCTAAGATTGGATTGGACTGAGGGTTGCGGCAGCAGGATCG
GCAGCACGTAGAAGGGGACCCGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGACTGAG
CACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
GAGTTCATTCCCAGTCTAAGATCGGATCAGACGAGGGTTGCGACAGCACATGCTGGGCTCGGGCA
TGTGTCTGGTGCTACATTTTTCTTCCCGGGGACCATCGTCAGAGCATCTCGGAGAACCTGACCTA
CGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCACACA
Found at i:16818618 original size:25 final size:26
Alignment explanation
Indices: 16818590--16818641 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
16818580 GTTGACTTAG
16818590 GCATACGGAGTTCATT-CCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16818615 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16818641 G
1 G
16818642 ATCGAAGTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 15 0.60
26 10 0.40
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16819518 original size:244 final size:240
Alignment explanation
Indices: 16819086--16819522 Score: 685
Period size: 244 Copynumber: 1.8 Consensus size: 240
16819076 GGAGCATCAT
*** *
16819086 CGGAGAACCTGACCGGGGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGA
1 CGGAGAACCTGACCAACGGCATTGGGGTGCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGA
* *
16819151 TGTGCGATGGGTGCTGGTACTTGGCAATTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
66 TGTGCGATGGGTGCGGGTACTTGGCAATTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAAC
* *
16819216 TCACACCCCGTTAAAGAGCATTTGAGATTTTACAGGTTTACTACCAGTAGCCATTAAAGTGTCAG
131 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTACCAGTAGCAATTAAAGTGTCAG
16819281 CACATGCTGGGCTCGGGCATATGCTGGTGTCGCATTTTTCTTCGC
196 CACATGCTGGGCTCGGGCATATGCTGGTGTCGCATTTTTCTTCGC
* *
16819326 CGGAGAACCTGACCAACGGCATTGGGGTGCCGACGATTGGGGGGGCCGGGGGGTGGTGTGTGCAC
1 CGGAGAACCTGACCAACGGCATTGGGGTGCCGACGA-TCGGGGGGCC--GGGG-GGTGTGCGCAC
** *
16819391 ATGATGTGCGATGGGTGCGGGTACTTGGCCCTTCTATTGGCCCCCTATCCCTCATCAAACCTCAA
62 ATGATGTGCGATGGGTGCGGGTACTTGGCAATTATATTGGCCCCCTATCCCTCATCAAACCTCAA
* * * *
16819456 GAACTCACCCCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTTCTGCCAGTAGCAATTAAAGTG
127 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTACCAGTAGCAATTAAAGTG
16819521 TC
192 TC
16819523 TGAAATGGGG
Statistics
Matches: 176, Mismatches: 17, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
240 32 0.18
241 9 0.05
243 4 0.02
244 131 0.74
ACGTcount: A:0.21, C:0.25, G:0.30, T:0.25
Consensus pattern (240 bp):
CGGAGAACCTGACCAACGGCATTGGGGTGCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGA
TGTGCGATGGGTGCGGGTACTTGGCAATTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAAC
TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTACCAGTAGCAATTAAAGTGTCAG
CACATGCTGGGCTCGGGCATATGCTGGTGTCGCATTTTTCTTCGC
Found at i:16821015 original size:845 final size:849
Alignment explanation
Indices: 16819322--16824458 Score: 5463
Period size: 845 Copynumber: 5.9 Consensus size: 849
16819312 GCATTTTTCT
* * * * * *
16819322 TCGCCGGAGAACCTGACCAACGGCATTGGGGTGCCGACGATTGGGGGGGCCGGGGGGTGGTGTGT
1 TCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGAC-AATCGGGGGGCC--AGGG-GGTGTGC
* *
16819387 GCACATGATGTGCGATGGGTGCGGGTACTTGGCCCTTCTATTGGCCCCCTATCCCTCATCAAACC
62 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * * * *
16819452 TCAAGAACTCACCCCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTTCTGCCAGTAGCAATTAA
127 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
*
16819517 AGTGTCTGAAATGGGGACACTTTTTTCAAATAGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
192 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
**
16819582 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTATTAAGTTTGGGGCCAAAACT
257 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
*
16819647 CC-T-TCTG-AAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCTTGAAACTT
322 CCATATCTGAAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTT
* *
16819709 CACGTGAAGGCTGAAGGCG-CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAG
387 CACGTGAAGGCTTAAGG-GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAG
* *
16819773 AAATATGAAGATGTGCCTAAACCCTCCTACCACCCTATCGATCCACGGCTTGCGTATCCCGTC-C
451 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * *
16819837 TCTGGTCGGCGTAGTGCCCGCCCGCCCGCTCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGT
516 TCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGT
* *
16819902 TCATTCCCAGTCTAAGAT-TGAACCGGACTGAGGGTTGCGGTAGCAAGATCGACAGCACGCAGAG
581 TCATTCCCAGTCTAAGATCAG-ACCAGACTGAGGGTTGCGGTAGCAAGATCGACAGCACGCAGAG
* * * * *
16819966 GGGGGCCCGATCAATCCTCGACTTGCGCATCCCGCCCCTCTAGCCGACTGAGCGCTCGCCCGCTC
645 GGGGACCCGATCGATCCTCGGCTTGCGCATCCCGCCCCTCTAGCCGACTGAGCGCCCGCACGCTC
*
16820031 GTTTCACT-GGTTGGCATAGGCATACGGAGTTAATTACCAGTCTAAGATCGGACCGGACCGAGGG
710 GTTTCACTGGGTTGGCATAGGCATACGGAGTTCATTACCAGTCTAAGATCGGACCGGACCGAGGG
* *
16820095 TTGTGGCAGCACATGCTAGGCTCCGACATGTGTTGGTGCCGCATTTCTCTTCGCCGGGGCTCCAT
775 TTGCGGCAGCACATGCTGGGCTCCGACATGTGTTGGTGCCGCATTTCTCTTCGCCGGGGCTCCAT
*
16820160 CGTTGGAGCA
840 CGTCGGAGCA
* *
16820170 TCGCCGGAGAACCTGACCGACGGCATTGAGGTTCCGGCAATCGGGGGGCCAGGGGGTGTGCGCAC
1 TCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACAATCGGGGGGCCAGGGGGTGTGCGCAC
* * *
16820235 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCGCTGATCAAACCTTGA
66 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* *
16820300 GAACTCACACCCCCTTAAAAAGCATTTTAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
131 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* * * *
16820365 TCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTGCAATTTTTTAGCTGAA
196 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
**
16820430 TTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTATTAAGTTTGGGGCCAAAACTCC-
261 -TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCA
* * *
16820494 T-TCTG-AAAAAGTTTCAAAAATCATAAAAAATAGAAAATGAGTCGTCTTGCCTTGAAACTTCAT
325 TATCTGAAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCAC
* *
16820557 GTGAAGGCTTAAGGCG-CCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCACGTAGAAA
390 GTGAAGGCTTAAGG-GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAA
* *
16820621 TATGAAGATGTGCCTAAACCCTCCTACCACCCTATCGATCCACGGCTTGCGTATCCCGTC-CTCT
454 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * *
16820685 GGTCGGCGTAGTGCCCGCCCGCCCGCTCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCA
519 GGCCGGCGTAGTGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCA
* *
16820750 TTCCCAGTCTAAGAT-TGAACCGGACTGAGGGTTGCGGTAGCAAGATCGACAGCACGCAGAGGGG
584 TTCCCAGTCTAAGATCAG-ACCAGACTGAGGGTTGCGGTAGCAAGATCGACAGCACGCAGAGGGG
* * * * *
16820814 GGCCCGATCAATCCTCGACTTGCGCATCCCGCCCCTCTAGCCGACTGAGCGCTCGCCCGCTCGTT
648 GACCCGATCGATCCTCGGCTTGCGCATCCCGCCCCTCTAGCCGACTGAGCGCCCGCACGCTCGTT
*
16820879 TCACT-GGTTGGCATAGGCATACGGAGTTAATTACCAGTCTAAGATCGGACCGGACCGAGGGTTG
713 TCACTGGGTTGGCATAGGCATACGGAGTTCATTACCAGTCTAAGATCGGACCGGACCGAGGGTTG
*
16820943 TGGCAGCACATGCTGGGCTCCGACATGTGTTGGTGCCGCATTTCTCTTCGCCGGGGCTCCATCGT
778 CGGCAGCACATGCTGGGCTCCGACATGTGTTGGTGCCGCATTTCTCTTCGCCGGGGCTCCATCGT
*
16821008 TGGAGCA
843 CGGAGCA
* *
16821015 TCGCCGGAGAACCTGACCGACGGCATTGAGGTTCCGGCAATCGGGGGGCCAGGGGGTGTGCGCAC
1 TCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACAATCGGGGGGCCAGGGGGTGTGCGCAC
16821080 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
66 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
*
16821145 GAACTCACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
131 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* * *
16821210 TCTGAAATGGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTTGACTTTTTAGCT-AC
196 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-
**
16821274 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGATGCCAAAACTCCT
260 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-C-
** *
16821339 TTCGAGAGAATTTTAAAAAATCTAGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATG
323 --C------A---T-----ATCT-G-A----AAAAAGTTTCAAAAATCATGAAAAATAGAAAATG
* *
16821404 AGTCGTCTTGCCATGAAACTTCACGTAAAGGCTTGAGGGACCATTGTATGAATTTACAAGCCATA
366 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* * *
16821469 AAAATGGCATTGGCACATAGAAATATGAGGATGTGCCTAAACCAACCTACCACCCCATCGATCCA
431 AAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * ** * *
16821534 CGGCTTGCGCATCTCGTCTCTCTGGCCGGCGTAGTGCTCGCCCGCTTGCCCGCTTGTTTCGTCGG
496 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGCTCGTTTCGTCGG
* * ** *
16821599 TTGGCTTAGGCATATAGAGTTCATTCCCAGTCTAAGATCAGACCAGA-TGGAGGGTTACGACAGT
561 TTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGCGGTAGC
* ** * * * *
16821663 AGGATCGGTAGCACGCAGAGGGGGACCCGGTTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
625 AAGATCGACAGCACGCAGAGGGGGACCCGATCGATCCTCGGCTTGCGCATCCCGCCCCTCTAGCC
*
16821728 -AGCTGAGCGCCCGCACGCTCGTTTCGTGGGTGGACTTAGGCGTACGGAGTTCATTCCCTGTGTA
690 GA-CTGAGCGCCCGCACGCTCGTTTC--------AC-T-GG-GT--TG-G--CA---------TA
* * * * * * * *
16821792 AGCATACGGAGTTCATTCCCAGTCCAAGATCAGACCAGACTGGGGGTTGCGGCAGCACATGTTGG
729 GGCATACGGAGTTCATTACCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * * * *
16821857 GCT-CGAGCATGTGCTGGTGCCGCATTTTTCTTCACTGGGGCACCATCGTCGGAGCA
794 GCTCCGA-CATGTGTTGGTGCCGCATTTCTCTTCGCCGGGGCTCCATCGTCGGAGCA
* * * * * *
16821913 TCGGCGGAGAACTTGACCGGCGGCATTGGGGTTTCGACGATCGGAGGGGCCGGGGGGTGTGCGCA
1 TCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACAATCGG-GGGGCCAGGGGGTGTGCGCA
* *
16821978 CATGATGTGTGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
65 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
16822043 AGAACTCACACCCCCTT-AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
130 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* *
16822107 GTCTGAAATGGGGACACTTTTTTCAAATTGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGA
195 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
*
16822172 ATTTTTTTGTGCATGCCAACAAAATTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTT
260 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA--C--
*
16822237 TCCGAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCATG-AAAATAGAAAATG
321 TCC------A---T-----ATCT------GAAAAAAGTTTCAAAAATCATGAAAAATAGAAAATG
* *
16822301 AGTCATCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
366 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
*** *
16822366 AAAATGGCATTGGCATGCAGAAATATGAAGTTGTGCCTAAACCCACCTACCACCCTATCGATCCA
431 AAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* ** * *
16822431 CGGCTTGCGCATCCCGTCTCCCTGGTTGACGTAGTGCCCGCCCGCCCGGC-CGCTCGTTTCATCG
496 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC-GCTCGCTCGTTTCGTCG
* * * **
16822495 GTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTATGATCGGACCAAACCAAGGGTTGCGGTAGC
560 GTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGC
* * * * * * ** * * * *
16822560 AAAATTGGCAGCATGCAGTGGGGGACTCGGCCGATCCCCGGCTTGCGCAAT-TCACCCCTCTTGC
625 AAGATCGACAGCACGCAGAGGGGGACCCGATCGATCCTCGGCTTGCGC-ATCCCGCCCCTCTAGC
* * *
16822624 C-AGCTGAACGCCCGCACGCTCGTTTCA-TGGGTTGACTTAGGCATACGGAGTTCATT-CCTAGT
689 CGA-CTGAGCGCCCGCACGCTCGTTTCACTGGGTTGGCATAGGCATACGGAGTTCATTACC-AGT
16822686 CTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGGTCGAGGGTTGCGGCAGCACATGC
752 CTAAG-AT-C-G-G---A----C---C---G----GA-C----CGAGGGTTGCGGCAGCACATGC
*
16822751 TGGGCT--GAGCATGT-TCTGGTGCCGCA-TT-T-TT--------CTTCATCG--GG-GCA
791 TGGGCTCCGA-CATGTGT-TGGTGCCGCATTTCTCTTCGCCGGGGCTCCATCGTCGGAGCA
* * * *
16822795 ---CC-----ATC-GTCGGACGGCATTGGGGTTCCGACGATCGGGCGGGCC-GAGGGGTGTGCGC
1 TCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACAATCGGG-GGGCCAG-GGGGTGTGCGC
* * * ** *
16822850 ACATGATGTGTGATTGGTGCTGGTACTTGGCCCTCATATTGGCTTCCTATCCCTCATCAAACCTT
64 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
*
16822915 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAG
129 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* * * * * * **
16822980 TTTGTGAAATGGAGACACTTTTTTCAAATAGTCACAAAATCTTGTGCACTTCGACTTTTTAATTG
194 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
*
16823045 AATTTTTTTGTGCATGCCAGA-AAAAATACAAGGATGACGTCTACCAAGTTTGGGGCCAAAAATC
259 AATTTTTTTGTGCATGCCA-ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAA--
* * * *
16823109 CTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAATTTTCAAAAATCGTGAAAAATAGAAAA
320 C-TCC------A---T-----AT------CTGAAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
* * *
16823174 CGTGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGGCCATTGTATGAATTTACAAGCCA
364 TGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
*
16823239 TAAAAATGGCATTGGCACATAGAAATATGAAGATGAGCCTAAACCCACCTACCACCCTATCGATC
429 TAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
** * *
16823304 CATAGCTTGCGCATCCCGTCTGTCTGGCCGGCGTAGT--------G--C-C-CGCTCGTTTCATC
494 CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGCTCGTTTCGTC
* * * *
16823357 GGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGCCCAGACCGAGGGTTGCAGCAG
559 GGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAG
* * * * * *
16823422 TAGGATCTG-TAGCACACAGAGGGGGACCCGATTGATCCTCGGCTTGCGCATCCCGCCCCTCTGG
624 CAAGATC-GACAGCACGCAGAGGGGGACCCGATCGATCCTCGGCTTGCGCATCCCGCCCCTCTAG
* * * * *
16823486 CCGACTGAGCGCCCGCATGCTCGTTTC-GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
688 CCGACTGAGCGCCCGCACGCTCGTTTCACTGGGTTGGCATAGGCATACGGAGTTCATTACCAGTC
* *
16823550 TAAGCATGCGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTACGGCAGCACATAC-
753 TAAG-AT-C-G-G---A----C---C---G----GAC-----CGAGGGTTGCGGCAGCACATGCT
* * * * * * * * *
16823614 GGGCTCAGGCATCTGCTGGTGCCGCATTTTTCCTCGTCGGGGCACCATCGCCGGAGCA
792 GGGCTCCGACATGTGTTGGTGCCGCATTTCTCTTCGCCGGGGCTCCATCGTCGGAGCA
* * * *
16823672 TCGCCGGAGAGCCTGA-CTAGCGGCATTGGGGTTCCGACGATCAGGGGGGCCAGGGGGGGTGTGT
1 TCGCCGGAGAACCTGACCGA-CGGCATTGGGGTTCCGACAATC-GGGGGGCCA--GGGGGTGTGC
* * * *
16823736 GCACATGATGTGTGATGGTTGCTGGTACTTGGCTCTTATATTAGCCCCCTATCCCTCATCAAACC
62 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
** *
16823801 TTAAGAACTCACA-CCCCTATAAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATT
127 TCGAGAACTCACACCCCCT-T-AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
*
16823865 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTA
190 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * * * * *
16823930 GCAGAATTTCTTTATGCAAGTCAACAAAAATACATGGATCACGTCTACCAAGTTTGGGGCCAAAA
255 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
** *
16823995 CTTCTTCCAAAAAAATTTTAAAAAATCTTGAACCACAAAAAGTTTTGAAAATCATGAAAAATAAA
320 ---C-TCC------A---T-----ATC-TG----A-AAAAAGTTTCAAAAATCATGAAAAATAGA
*
16824060 AAATGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
361 AAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
*
16824125 CCGTAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
426 CCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * * * *
16824190 ATCCATGGCTTGCGCATCTCGTCTCTCTGGCCCGCGTAGTGCCTGCCCGCCCCCCCTCCCGCTCG
491 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG--CCCGCT--CGCTCG
* * *
16824255 TTTCGTTC-GTTGGCTTAGGCATATGGAGTTCATTTCCAGTCTAAGATCAGATCGGA-TCGAGGG
552 TTTCG-TCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGG
* * * * * * * *
16824318 TTGCGATAGCAGGATCGACAGTACGCAGAGGGGGACTCGACCGATCCCCGGCTTACACATCCCGC
615 TTGCGGTAGCAAGATCGACAGCACGCAGAGGGGGACCCGATCGATCCTCGGCTTGCGCATCCCGC
* * * * * ** * *
16824383 CCCTTTGGCC-AGCTAAGCGCCGGCACGCTCGTTTC-GTGGGTTCACTTAGGCATACGAAGTTCA
680 CCCTCTAGCCGA-CTGAGCGCCCGCACGCTCGTTTCACTGGGTTGGCATAGGCATACGGAGTTCA
*
16824446 TTCCCAGTCTAAG
744 TTACCAGTCTAAG
16824459 CATACGGAGT
Statistics
Matches: 3760, Mismatches: 347, Indels: 307
0.85 0.08 0.07
Matches are distributed among these distances:
844 246 0.07
845 829 0.22
847 10 0.00
848 35 0.01
858 1 0.00
862 8 0.00
863 242 0.06
864 10 0.00
865 3 0.00
866 1 0.00
867 1 0.00
870 3 0.00
871 191 0.05
872 171 0.05
873 121 0.03
874 202 0.05
875 168 0.04
876 2 0.00
877 3 0.00
878 1 0.00
879 1 0.00
880 6 0.00
881 1 0.00
882 4 0.00
883 5 0.00
884 3 0.00
885 11 0.00
886 31 0.01
887 10 0.00
888 84 0.02
889 360 0.10
892 2 0.00
893 3 0.00
894 1 0.00
895 2 0.00
896 18 0.00
897 340 0.09
898 344 0.09
899 99 0.03
900 1 0.00
901 2 0.00
902 2 0.00
903 1 0.00
904 2 0.00
905 177 0.05
906 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (849 bp):
TCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACAATCGGGGGGCCAGGGGGTGTGCGCAC
ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCAT
ATCTGAAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACG
TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATA
TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
CCGGCGTAGTGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATT
CCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGCAAGATCGACAGCACGCAGAGGGGGAC
CCGATCGATCCTCGGCTTGCGCATCCCGCCCCTCTAGCCGACTGAGCGCCCGCACGCTCGTTTCA
CTGGGTTGGCATAGGCATACGGAGTTCATTACCAGTCTAAGATCGGACCGGACCGAGGGTTGCGG
CAGCACATGCTGGGCTCCGACATGTGTTGGTGCCGCATTTCTCTTCGCCGGGGCTCCATCGTCGG
AGCA
Found at i:16822677 original size:897 final size:899
Alignment explanation
Indices: 16820895--16824521 Score: 4929
Period size: 897 Copynumber: 4.1 Consensus size: 899
16820885 GTTGGCATAG
* * * * *
16820895 GCATACGGAGTTAATTACCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
16820960 CTCCGA-CATGTGTTGGTGCCGCATTTCTCTTCGC-CGGGGCTCCATCGTTGGAGCATCGCCGGA
66 CT-CGAGCATGTGCTGGTGCCGCATTTTTCTTCACTCGGGGCACCATCGTCGGAGCATCGCCGGA
* * * * *
16821023 GAACCTGACCGACGGCATTGAGGTTCCGGCAATCGGGGGGCCAGGGGGTGTGCGCACATGATGTG
130 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
16821088 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
16821153 AACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
16821218 GGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTTGACTTTTTAGCT-ACATTTTTTT
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGACTTTTTAGCTGA-ATTTTTTT
** *
16821282 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGATGCCAAAACTCCTTT-CGAGA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CTTTCCGAAA
* * ** *
16821346 GAATTTTAAAAAATCT-AGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGT
453 AAATTTTAAAAAATCTCA-AACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGT
* *
16821410 CTTGCCATGAAACTTCACGTAAAGGCTTGAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
16821475 GCATTGGCACATAGAAATATGAGGATGTGCCTAAACCAACCTACCACCCCATCGATCCACGGCTT
582 GCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * ** * *
16821540 GCGCATCTCGTCTCTCTGGCCGGCGTAGTGCTCGCCCGCTTGCCCGCTTGTTTCGTCGGTTGGCT
647 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCT
* ** * *
16821605 TAGGCATATAGAGTTCATTCCCAGTCTAAGATCAGACCAGATGGAGGGTTACGACAGTAGGATCG
712 TAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCG
* *** *
16821670 GTAGCACGCAGAGGGGGACCCGGTTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAG
777 GCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAA
* * * *
16821735 CGCCCGCACGCTCGTTTCGTGGGTGGACTTAGGCGTACGGAGTTCATTCCCTGTGTAA
842 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
16821793 GCATACGGAGTTCATTCCCAGTCCAAGATCAGACCAGA-CTGGGGGTTGCGGCAGCACATGTTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATC-GAGGGTTGCGGCAGCACATGCTGG
*
16821857 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACT-GGGGCACCATCGTCGGAGCATCGGCGGA
65 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACTCGGGGCACCATCGTCGGAGCATCGCCGGA
* *
16821921 GAACTTGACCGGCGGCATTGGGGTTTCGACGATCGGAGGGGCCGGGGGGTGTGCGCACATGATGT
130 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGG-GGGGCCGGGGGGTGTGCGCACATGATGT
*
16821986 GTGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
194 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
16822051 CACCCCCTT-AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
16822115 TGGGGACACTTTTTTCAAATTGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGACTTTTTAGCTGAATTTTTTT
*
16822180 GTGCATGCCAACAAAATTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAA
* *
16822245 AATTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCATG-AAAATAGAAAATGAGTCATCT
454 AATTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCT
*
16822309 TGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*** *
16822374 ATTGGCATGCAGAAATATGAAGTTGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
584 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* ** * *
16822439 GCATCCCGTCTCCCTGGTTGACGTAGTGCCCGCCCGCCCGGCCGCTCGTTTCATCGGTTGGCTTA
649 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTA
* * * * ** ** *
16822504 GGCATATGGAGTTCATTCCCAGTCTATGATCGGACCAAACCAAGGGTTGCGGTAGCAAAATTGGC
714 GGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGGC
* * * * * * *
16822569 AGCATGCAGTGGGGGACTCGGCCGATCCCCGGCTTGCGCAAT-TCACCCCTCTTGCCAGCTGAAC
779 AGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGC-ATCCCGCCCCTCTGGCCAGCTGAAC
* *
16822633 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
843 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
16822690 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGGTCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCACATGCTGGG
*
16822755 CT-GAGCATGTTCTGGTGCCGCATTTTTCTTCA-TCGGGGCACCA---TC---G--T---C---G
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACTCGGGGCACCATCGTCGGAGCATCGCCGGAG
*
16822804 -----GA----CGGCATTGGGGTTCCGACGATCGGGCGGGCCGAGGGGTGTGCGCACATGATGTG
131 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGG-GGGCCGGGGGGTGTGCGCACATGATGTG
* * ** *
16822860 TGATTGGTGCTGGTACTTGGCCCTCATATTGGCTTCCTATCCCTCATCAAACCTTGAGAACTCAC
195 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
16822925 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTTTGTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * * **
16822990 GGAGACACTTTTTTCAAATAGTCACAAAATCTTGTGCACTTCGACTTTTTAATTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGACTTTTTAGCTGAATTTTTTTG
* * *
16823055 TGCATGCCAGA-AAAAATACAAGGATGACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA
390 TGCATGCCA-ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAA
* * * * *
16823119 AATTTTAAAAAATCCCAAACCGCAAAAATTTTCAAAAATCGTGAAAAATAGAAAACGTGTCGTCT
454 AATTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCT
*
16823184 TGCCATGAAACTTCACGTGAAGGCTTAAGGGGCCATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* **
16823249 ATTGGCACATAGAAATATGAAGATGAGCCTAAACCCACCTACCACCCTATCGATCCATAGCTTGC
584 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
*
16823314 GCATCCCGTCTGTCTGGCCGGCGTAGT------------GCCCGCTCGTTTCATCGGTTGGCTTA
649 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTA
* * *
16823367 GGCATATGGAGTTCATTCCCAGTCTAAGATCAGCCCAGACCGAGGGTTGC-AGCAGTAGGATCTG
714 GGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGA-CAGCAGGATCGG
* * ** * *
16823431 TAGCACACAGAGGGGGACCCGATTGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCC-GACTGAG
778 CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAG-CTGAA
*
16823495 CGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
16823553 GCATGCGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTACGGCAGCACATAC-GGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
16823617 CTC-AGGCATCTGCTGGTGCCGCATTTTTCCTC-GTCGGGGCACCATCGCCGGAGCATCGCCGGA
66 CTCGA-GCATGTGCTGGTGCCGCATTTTTCTTCACTCGGGGCACCATCGTCGGAGCATCGCCGGA
* ** *
16823680 GAGCCTGACTAGCGGCATTGGGGTTCCGACGATCAGGGGGGCCAGGGGGGGTGTGTGCACATGAT
130 GAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCC--GGGGGGTGTGCGCACATGAT
* * * **
16823745 GTGTGATGGTTGCTGGTACTTGGCTCTTATATTAGCCCCCTATCCCTCATCAAACCTTAAGAACT
192 GTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
*
16823810 CACA-CCCCTATAAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
257 CACACCCCCT-T-AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* *
16823874 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCAGAATTT
320 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGACTTTTTAGCTGAATTT
* * * * *
16823939 CTTTATGCAAGTCAACAAAAATACATGGATCACGTCTACCAAGTTTGGGGCCAAAACT-TCTTCC
385 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCT-TTCC
* ** * ** *
16824003 AAAAAAATTTTAAAAAATCTTGAACCACAAAAAGTTTTGAAAATCATGAAAAATAAAAAATGAGT
449 GAAAAAATTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGT
* *
16824068 TGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCGTAAAA
514 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
*
16824133 ATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGG
579 ATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * *
16824198 CTTGCGCATCTCGTCTCTCTGGCCCGCGTAGTGCCTGCCCGCCCCCCCTCCCGCTCGTTTCGTTC
644 CTTGCGCATCCCGTCTCTCTGGCCGGCGTA--G--TGCCCGCCCGCCCGCCCGCTCGTTTC-ATC
* * * * *
16824263 -GTTGGCTTAGGCATATGGAGTTCATTTCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGATAG
704 GGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAG
* * * * * *
16824327 CAGGATCGACAGTACGCAGAGGGGGACTCGACCGATCCCCGGCTTACACATCCCGCCCCTTTGGC
769 CAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * *
16824392 CAGCT-AAGCGCCGGCACGCTCGTTTCGTGGGTTCACTTAGGCATACGAAGTTCATTCCCAGTCT
834 CAGCTGAA-CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
16824456 AA
898 AA
* * *
16824458 GCATACGGAGTTCATTCCCAGTCTAAGGTCAGACTGGATCGAGAGTTGCGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCACATGCTGG
16824522 AGCATCAGCA
Statistics
Matches: 2401, Mismatches: 257, Indels: 134
0.86 0.09 0.05
Matches are distributed among these distances:
862 9 0.00
863 267 0.11
866 1 0.00
869 1 0.00
871 1 0.00
872 1 0.00
873 117 0.05
874 209 0.09
875 162 0.07
877 3 0.00
882 3 0.00
885 1 0.00
886 27 0.01
887 8 0.00
888 82 0.03
889 363 0.15
890 1 0.00
891 1 0.00
893 3 0.00
895 1 0.00
896 38 0.02
897 414 0.17
898 348 0.14
899 100 0.04
904 1 0.00
905 233 0.10
906 6 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (899 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCACATGCTGGG
CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACTCGGGGCACCATCGTCGGAGCATCGCCGGAG
AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGT
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGACTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAA
TTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGG
CATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGGCAG
CACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAACGCC
CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:16822694 original size:26 final size:26
Alignment explanation
Indices: 16822664--16822716 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16822654 GTTGACTTAG
* *
16822664 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16822690 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16822716 G
1 G
16822717 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16823556 original size:26 final size:26
Alignment explanation
Indices: 16823527--16823579 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16823517 GTTGACTTAG
16823527 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16823553 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16823579 G
1 G
16823580 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16824019 original size:889 final size:889
Alignment explanation
Indices: 16822806--16824521 Score: 2349
Period size: 889 Copynumber: 1.9 Consensus size: 889
16822796 CATCGTCGGA
* *
16822806 CGGCATTGGGGTTCCGACGATCGGGCGGGCCGAGGGGTGTGCGCACATGATGTGTGATTGGTGCT
1 CGGCATTGGGGTTCCGACGATCGGG-GGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCT
* ** *
16822871 GGTACTTGGCCCTCATATTGGCTTCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAA
65 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * * *
16822936 GAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTTTGTGAAATGGAGACACTTT
130 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * * ***
16823001 TTTCAAATAGTCACAAAATCTTGTGCACTTCGACTTTTTAATTGAATTTTTTTGTGCATGCCAGA
195 TTTCAAATGGTCACAAAATCTTGTACACTTTGACTTTTTAGCAGAATTTTTTTGTGCATGCCA-A
* *
16823066 -AAAAATACAAGGATGACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAA
259 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* * *
16823130 ATCCCAAACCGCAAAAA-TTTTCAAAAATCGTGAAAAATAGAAAACGTGTCGTCTTGCCATGAAA
324 ATCCCAAACCGCAAAAAGTTTT-AAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAA
*
16823194 CTTCACGTGAAGGCTTAAGGGGCCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAT
388 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAT
* **
16823259 AGAAATATGAAGATGAGCCTAAACCCACCTACCACCCTATCGATCCATAGCTTGCGCATCCCGTC
453 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
*
16823324 TGTCTGGCCGGCGTA-G-T-G-CCCGCTCGTTTCATCGGTTGGCTTAGGCATATGGAGTTCATTC
518 TCTCTGGCCGGCGTAGGCTCGCCCCGCTCGTTTCATCGGTTGGCTTAGGCATATGGAGTTCATTC
* * * *
16823385 CCAGTCTAAGATCAGCCCAGACCGAGGGTTGC-AGCAGTAGGATCTGTAGCACACAGAGGGGGAC
583 CCAGTCTAAGATCAGACCAGACCGAGGGTTGCGA-CAGCAGGATCTGCAGCACGCAGAGGGGGAC
** * *
16823449 CCGATTGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCC-GACTGAGCGCCCGCATGCTCGTTTC
647 CCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAG-CTGAGCGCCCGCACGCTCGTTTC
*
16823513 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATGCGGAGTTCATTCCCAGTCTA
711 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * * *
16823578 AGATCAGACTGGATCGAGGGTTACGGCAGCACATAC-GGGCTCAGGCATCTGCTGGTGCCGCATT
776 AGATCAGACCGGATCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATT
* * *
16823642 TTTCCTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAGCCTGACTAG
841 TTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGAC-AG
* *
16823692 CGGCATTGGGGTTCCGACGATCAGGGGGGCCAGGGGGGGTGTGTGCACATGATGTGTGATGGTTG
1 CGGCATTGGGGTTCCGACGATC-GGGGGGCC--GGGGGGTGTGCGCACATGATGTGTGATGGGTG
* * **
16823757 CTGGTACTTGGCTCTTATATTAGCCCCCTATCCCTCATCAAACCTTAAGAACTCACA-CCCCTAT
63 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT-T
*
16823821 AAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
127 -AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * * * *
16823886 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCAGAATTTCTTTATGCAAGT
191 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGACTTTTTAGCAGAATTTTTTTGTGCATGC
* * *
16823951 CAACAAAAATACATGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTCCAAAAAAATTTTAA
256 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
*** * * * *
16824016 AAAATCTTGAACCACAAAAAGTTTTGAAAATCATGAAAAATAAAAAATGAGTTGTCTTGCCATGA
321 AAAATCCCAAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGA
*
16824081 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCGTAAAAATGGCATTGGCAC
386 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* *
16824146 ATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCTCG
451 ATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* *
16824211 TCTCTCTGGCCCGCGTAGTGCCTGCCCGCCCCCCCTCCCGCTCGTTTCGTTC-GTTGGCTTAGGC
516 TCTCTCTGGCCGGCGTAG-G-CT---CG------C-CCCGCTCGTTTC-ATCGGTTGGCTTAGGC
* * * * *
16824275 ATATGGAGTTCATTTCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGATAGCAGGATC-GACAG
568 ATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCTG-CAG
* * * * * *
16824339 TACGCAGAGGGGGACTCGACCGATCCCCGGCTTACACATCCCGCCCCTTTGGCCAGCTAAGCGCC
632 CACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCC
* * *
16824404 GGCACGCTCGTTTCGTGGGTTCACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGT
697 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* * *
16824469 TCATTCCCAGTCTAAGGTCAGACTGGATCGAGAGTTGCGGCAGCACATGCTGG
762 TCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCACATGCTGG
16824522 AGCATCAGCA
Statistics
Matches: 726, Mismatches: 76, Indels: 36
0.87 0.09 0.04
Matches are distributed among these distances:
886 27 0.04
887 8 0.01
888 81 0.11
889 361 0.50
890 4 0.01
891 1 0.00
893 1 0.00
897 1 0.00
904 1 0.00
905 235 0.32
906 6 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (889 bp):
CGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTG
GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
TTCAAATGGTCACAAAATCTTGTACACTTTGACTTTTTAGCAGAATTTTTTTGTGCATGCCAACA
AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
CCCAAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTT
CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGA
AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
CTGGCCGGCGTAGGCTCGCCCCGCTCGTTTCATCGGTTGGCTTAGGCATATGGAGTTCATTCCCA
GTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCTGCAGCACGCAGAGGGGGACCCGA
CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGG
TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
AGACCGGATCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCT
TCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACAG
Found at i:16824469 original size:26 final size:26
Alignment explanation
Indices: 16824432--16824484 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16824422 GTTCACTTAG
16824432 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
16824458 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16824484 G
1 G
16824485 GTCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16826326 original size:26 final size:26
Alignment explanation
Indices: 16826296--16826348 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16826286 GTTGACTTAG
16826296 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
***
16826322 GCATATTTAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16826348 G
1 G
16826349 ATTGGACCAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16827275 original size:416 final size:420
Alignment explanation
Indices: 16826685--16827473 Score: 1176
Period size: 416 Copynumber: 1.9 Consensus size: 420
16826675 TGAGTTTTTA
* * *
16826685 GCTGATTTTTTTTTTGCCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAA
1 GCTGAATTTTTTTGTGCCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGCGCCAAA
* * ** *
16826750 AAACCTTTCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAG
66 AAACCTTCCAAAAAAATTTTAAAAAATCCCAAACAGCAAAAAGTTTCAAAAATCGTGAAAAATAG
*
16826815 AAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTACAA
131 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTACAA
* * * *
16826880 GCCA-GAAAATGGCATTGGCACGTAAAAATATGAAGATGTGCCTAAACCCACCTACTACCTTATC
196 GCCATAAAAATGGCATTGGCACATAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * * *
16826944 GATCCACGGCTTGCATATCCTGTCTCTCTGGCCGGCGTAGTG-G-CTACCCG-TCC-GCTCGTTT
261 GAT-CACGGCTTGCACATCC-ATCTCTCTGGCCGACGTAGTGCGCCCACCCGCACCTGCTCGTTT
* *
16827005 CGTCGGATAGCTTAGGCATACGGAGTTCATTCTCAGTCTAAGATCGGACTGGACCGAGGGTTGCA
324 CATCGGATAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCA
16827070 GCAGCACATGCTGAGCTTGGGCATGTGCTGGT
389 GCAGCACATGCTGAGCTTGGGCATGTGCTGGT
*
16827102 GCTGAATTTTTTTGTG-CATGCCAACAAAAATACAAGGATCACTTCTACCAAGTTTGGCGCCAAA
1 GCTGAATTTTTTTGTGCCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGCGCCAAA
** * ** *
16827166 ACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACAGTAAAAAGTTTTGAAAATCTTGAAAAATAG
66 AAACCTTCCAAAAAAATTTTAAAAAATCCCAAACAGCAAAAAGTTTCAAAAATCGTGAAAAATAG
* *
16827231 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGGTTAAGGGACCATTGTATGAATTTACAA
131 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTACAA
* *
16827296 GCTATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
196 GCCATAAAAATGGCATTGGCACATAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
*
16827361 GATCACGGCTTGCACATCCATCTCTCTGGCCGACGTAGTGCTCGCCCGCCCGCCCACCTGCTCGT
261 GATCACGGCTTGCACATCCATCTCTCTGGCCGACGTAGTG--CGCCCACCCG--CACCTGCTCGT
* *
16827426 TTCATCGGCTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
322 TTCATCGGATAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
16827474 AACCAGAGTG
Statistics
Matches: 329, Mismatches: 34, Indels: 12
0.88 0.09 0.03
Matches are distributed among these distances:
415 19 0.06
416 180 0.55
417 72 0.22
418 1 0.00
419 5 0.02
422 2 0.01
423 50 0.15
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.26
Consensus pattern (420 bp):
GCTGAATTTTTTTGTGCCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGCGCCAAA
AAACCTTCCAAAAAAATTTTAAAAAATCCCAAACAGCAAAAAGTTTCAAAAATCGTGAAAAATAG
AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTACAA
GCCATAAAAATGGCATTGGCACATAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
GATCACGGCTTGCACATCCATCTCTCTGGCCGACGTAGTGCGCCCACCCGCACCTGCTCGTTTCA
TCGGATAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCAGC
AGCACATGCTGAGCTTGGGCATGTGCTGGT
Found at i:16828547 original size:26 final size:26
Alignment explanation
Indices: 16828511--16828563 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16828501 GTTGACTTAG
16828511 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16828537 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16828563 G
1 G
16828564 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16829901 original size:709 final size:711
Alignment explanation
Indices: 16828542--16830010 Score: 2176
Period size: 709 Copynumber: 2.1 Consensus size: 711
16828532 TCTAAGCATG
* * * **
16828542 CGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGA
1 CGGAGTTCAGTACCAGTCTAAGATCAGACCACACCGAGGGTTGCGGCAGCACATGCTGGGCTCGA
* * * * *
16828607 GCTTGTGCTGGTGCCGCATTTTTGTTCGTCGGGGCACCATCATCGGAGCATCGTCGGAGAACCTA
66 GCATGTACTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCATCGGAGCATCGTCGGAGAACCTA
* **
16828672 ACCGGCGGCATTGGTGTTCCGACGATCGGGGGGGCCGGGGGGGTATACGCACATGATGTGCGATG
131 ACCGACGGCACCGGTGTTCCGACGATCGGGGGGGCCGGGGGGGTATACGCACATGATGTGCGATG
*
16828737 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTAAGAACTCACACCCA
196 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCA
* *
16828802 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGAGA
261 CTTAAAGAGCATTTGAGATGTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGAGA
* * * *
16828867 CACTTTTTTGAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
326 CACTTTGTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTACCTGAATTTTTTTGTGCAT
* * * * *
16828932 GCCAAAAAAAATACAGGGATCACGTCTACCAAATTTAGGGCCAAAAATCCTTCTGAAAAAATTTT
391 GACAAAAAAAATACAAGGACCACATCTACCAAATTTAGGGCCAAAAATCCTTCCGAAAAAATTTT
** *
16828997 AAAAAATCCCGAACCAAAAAAAGTTTTGAAAATCTTGAAAAATAGAAAACGAGTCGTCTTGCCAT
456 AAAAAATCCCGAACCAAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
16829062 GAAACTTCACATGAAGGCTTAAGCGACCATTGTATGAATTTACAAGCCATAAAAGTGGCATTGGC
521 GAAACTTCACATGAAGGCTTAAGCGACCATTGTATGAATTTACAAGCCATAAAAGTGGCATTGGC
*
16829127 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCC
586 ATGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCC
* * * * *
16829192 CGTCTTTCTGGCCGACGTAGCGGCCGCCCGCCCACTCGTTCCGTCTGTTAGCTTAGGCATA
651 CGTCTCTCTGGCCGACGTAGCGCCCGCCCGCCCACTCATTCCGTCGGTTAGCTTAGGAATA
* * * * *
16829253 CGGAGTTTAGTACCAGTCTAAGATCAGACCACATCGATGGTTGCGGTAGCACATGCTGGGCTCGG
1 CGGAGTTCAGTACCAGTCTAAGATCAGACCACACCGAGGGTTGCGGCAGCACATGCTGGGCTCGA
* * * *
16829318 GCATGTACTGTTGCCGCCTTTTTCTTCGCCAGGGCACCATCGTCGGAGCATCGTCGGAGAACCTG
66 GCATGTACTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCATCGGAGCATCGTCGGAGAACCTA
* * * *
16829383 ACCGACGGCGGCCGG-GTTCTGACGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGAT
131 ACCGACGGC-ACCGGTGTTCCGACGATCGGGGGGGCCGGGGGGGTATACGCACATGATGTGCGAT
*
16829445 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
195 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCC
*
16829510 -CTTAAAGAGCATTTGAGATGTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
260 ACTTAAAGAGCATTTGAGATGTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGAG
*
16829574 ACACTTTGTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTACCTGATTTTTTTTGTGCA
325 ACACTTTGTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTACCTGAATTTTTTTGTGCA
* * * *
16829639 TGACAACAAAAATACAAGGACCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
390 TGACAAAAAAAATACAAGGACCACATCTACCAAATTTAGGGCCAAAAATCCTTCCGAAAAAATTT
* **
16829704 TAAAAAGATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
455 TAAAAA-ATCCCGAACCAAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* * * * *
16829769 ATGAAACTTCACGTGAAGGCTTAAGGGGCCATTGTATGAATTTATAGGCCA-AAAAGATGGCATT
519 ATGAAACTTCACATGAAGGCTTAAGCGACCATTGTATGAATTTACAAGCCATAAAAG-TGGCATT
* *
16829833 GGCATGCATG-AATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGC
583 GGCATGCA-GAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGC
* ** * *
16829897 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTTCATTTCGTCGGTTGGCTTAGGAATA
647 ATCCCGTCTCTCTGGCCGACGTAGCGCCCGCCCGCCCACTCATTCCGTCGGTTAGCTTAGGAATA
* * * ** * *
16829962 CGGAGTTCATTCCCAGTCTAAGATCATACCGGACTGAGGGTTACGGCAG
1 CGGAGTTCAGTACCAGTCTAAGATCAGACCACACCGAGGGTTGCGGCAG
16830011 TAGGATTGCT
Statistics
Matches: 674, Mismatches: 80, Indels: 10
0.88 0.10 0.01
Matches are distributed among these distances:
708 188 0.28
709 345 0.51
710 9 0.01
711 130 0.19
712 2 0.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (711 bp):
CGGAGTTCAGTACCAGTCTAAGATCAGACCACACCGAGGGTTGCGGCAGCACATGCTGGGCTCGA
GCATGTACTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCATCGGAGCATCGTCGGAGAACCTA
ACCGACGGCACCGGTGTTCCGACGATCGGGGGGGCCGGGGGGGTATACGCACATGATGTGCGATG
GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCA
CTTAAAGAGCATTTGAGATGTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGAGA
CACTTTGTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTACCTGAATTTTTTTGTGCAT
GACAAAAAAAATACAAGGACCACATCTACCAAATTTAGGGCCAAAAATCCTTCCGAAAAAATTTT
AAAAAATCCCGAACCAAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCACATGAAGGCTTAAGCGACCATTGTATGAATTTACAAGCCATAAAAGTGGCATTGGC
ATGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCC
CGTCTCTCTGGCCGACGTAGCGCCCGCCCGCCCACTCATTCCGTCGGTTAGCTTAGGAATA
Done.