Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 91 of 195
Found at i:16830145 original size:26 final size:26
Alignment explanation
Indices: 16830116--16830168 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16830106 GTTGACTTAG
* *
16830116 GCATACGGAGTTTATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16830142 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16830168 G
1 G
16830169 ATCGAATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16831043 original size:26 final size:26
Alignment explanation
Indices: 16831013--16831065 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16831003 GTTGACTTAG
16831013 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
***
16831039 GCATATTTAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16831065 G
1 G
16831066 ATTGGACCAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16831645 original size:883 final size:886
Alignment explanation
Indices: 16829396--16831766 Score: 3405
Period size: 897 Copynumber: 2.7 Consensus size: 886
16829386 GACGGCGGCC
16829396 GGGTTCTGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
1 GGGTTCTGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
16829461 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTG
66 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* *
16829525 AGATGTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTGTTCAAATG
131 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* * * *
16829590 GTCACAAAATCTTGTACACATCGAGTTTTTACCTGATTTTTTTTGTGCATGACAACAAAAATACA
196 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTATGCATGCCAACAAAAATACA
*
16829655 AGGACCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAGAT-CTCGAA
261 AGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA-ATCCT-GAA
16829719 CCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
324 CCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* * * ** *
16829784 AAGGCTTAAGGGGCCATTGTATGAATTTATAGGCCAAAAAGATGGCATTGGCATGCATGAATATA
389 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAA-ATGGCATTGGCATGCAAAAATATG
* *
16829849 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCC
453 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCC
* * *
16829914 GACGTAGTGCCCGCCCGCCCGTTC-ATTTCGTCGGTTGGCTTAGGAATACGGAGTTCATTCCCAG
518 GGCGTAGTGCCCGCCCGCTCGTTCTA-TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
* * * * *
16829978 TCTAAGATCATACCGGACTGAGGGTTACGGCAGTAGGATTGCTAGCACACAAAGGGGGACCCGAC
582 TCTAAGATCATACCAGACTGAGGGATACGGCAGCAGGATGGCTAGCACACAAAGGGGAACCCGAC
* * * * * * * * * * *
16830043 CGAACCCCGGCTTGCTCTTCTCGCCCCTCTGGTAGGCTGAGCGCCTGTACGCTCGTTTCGTGGGT
647 CGAACCCCGACTTACGCATCCCACCCCTCTGGCAGGCTGAGCGCATGCACGCTCATTTCATGGGT
* *
16830108 TGACTTAGGCATACGGAGTTTATTCCCTGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCG
712 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCG
* * * * ** *
16830173 AATCGGACCGAGGTTTGCGGCAGCACATACTGGGCTTGAGCATGTGCTGGTGCCGTATTTTTCTT
777 AACCAGACCGAGGGTTGCGGCAGCACATACTGGGCTTGAGCATGTGCTGGTACCACATTTCTCTT
* *
16830238 CATCGGGGCACCATCGTCGGAGCATTGCCGAAGAACCTAACCAACGGCATTG
842 CATCGAGGCACCATC-T----G-ATT-CCGAAGAACCTAACCAACAGCATTG
* * *
16830290 GGGTTCCGACGATCGGGGGTACCGGGGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACT
1 GGGTTCTGACGATCGGGGG-GCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
*
16830355 TGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
63 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* * *
16830420 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAGGTGACTTAAATGGGGACACTTTTTTCAA
128 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
*
16830485 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAAT
193 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTATGCATGCCAACAAAAAT
* ** * * *
16830550 ACAAGGATCACGTCTAAAAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTAAAAAAATCTTGA
258 ACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGA
* * *
16830615 ACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGT
323 ACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* *
16830680 GAAGGCTTAAGGGACCATTGTGTGAATTTACAACCCATAAAAATGGCATTGGCATGCAAAAATAT
388 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA-AAAAATGGCATTGGCATGCAAAAATAT
* *
16830745 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACCGCTTACGCATCCTGTCTCTCTGGC
452 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGC
*
16830810 CGGCGTAGTGCCCGCCCGCTCGTTCTATTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAG
517 CGGCGTAGTGCCCGCCCGCTCGTTCTATTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
* ** * * *
16830875 TCTAAGATC-TCACCAGACTGAGTGATGTGGCAGCAGGATCGGC-AGCACGCAGAGGGGAACCCT
582 TCTAAGATCAT-ACCAGACTGAGGGATACGGCAGCAGGAT-GGCTAGCACACAAAGGGGAACCCG
* * * * * *
16830938 ACTGATCCCTGACTTACGCATCCCACCCTTCTGGCCGGCTGAGCGCATGCACTCTCATTTCATGG
645 ACCGAACCCCGACTTACGCATCCCACCCCTCTGGCAGGCTGAGCGCATGCACGCTCATTTCATGG
**
16831003 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATTTAGTTCATTCCCAGTCTAAGAT
710 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGAT
* * * * *
16831068 TGGACCATACCGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTACCACATTTCTC
775 CGAACCAGACCGAGGGTTGCGGCAGCACATACTGGGCTTGAGCATGTGCTGGTACCACATTTCTC
* * * ***
16831133 TTCGTCGAGGCACCAT-T-A-T-CGGAGAACCTGACCGGTAGCATTG
840 TTCATCGAGGCACCATCTGATTCCGAAGAACCTAACCAACAGCATTG
* * * *
16831176 GGGTTCTGGCGATCGGGGGGCCGGGGGGTATGCACACATGATGTGCGATGGTTGCTGGTACTTGG
1 GGGTTCTGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* *
16831241 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTCAAGAGCATTTG
66 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* *
16831306 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAACTGTCTGAAATAGGGACACTTTTTTCAAATG
131 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* *
16831371 GTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGATTTTTTTTTTTGCATGCCAACAAAAATAC
196 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-TTTTTTTTATGCATGCCAACAAAAATAC
** *
16831436 AAGGATCACATCTACCAAGTTTGGGGCCAAAAAACCTTTCGAAAAAATTTTAAAAAATCCTGAAC
260 AAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAAC
* *
16831501 CGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGA
325 CGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* * * *
16831566 AGGCTTAAGGGACCATTGTATAAATTTACAAGCCAGAAAATGGCATTGGCACGTAAAAATATGAA
390 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAATGGCATTGGCATGCAAAAATATGAA
* * **
16831631 GATGTGCCTAAACCCACCTACTACCTTATCGATCCACGGCTTGCATATCCTGTCTCTCTGGCCGG
455 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGG
** * * *
16831696 CGTAGTGCCTACCCG-TCCGCTCGT-TTCGTCGGATAGCTTAGGCATACGGAGTTCATTCCCAGT
520 CGTAGTGCCCGCCCGCT-CGTTC-TATTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
16831759 CTAAGATC
583 CTAAGATC
16831767 GGACTGGACC
Statistics
Matches: 1323, Mismatches: 142, Indels: 35
0.88 0.09 0.02
Matches are distributed among these distances:
882 1 0.00
883 343 0.26
884 175 0.13
885 2 0.00
886 35 0.03
888 1 0.00
889 1 0.00
894 18 0.01
895 3 0.00
896 1 0.00
897 548 0.41
898 195 0.15
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (886 bp):
GGGTTCTGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTATGCATGCCAACAAAAATACA
AGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACC
GCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
GGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAATGGCATTGGCATGCAAAAATATGAAG
ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGGC
GTAGTGCCCGCCCGCTCGTTCTATTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
AGATCATACCAGACTGAGGGATACGGCAGCAGGATGGCTAGCACACAAAGGGGAACCCGACCGAA
CCCCGACTTACGCATCCCACCCCTCTGGCAGGCTGAGCGCATGCACGCTCATTTCATGGGTTGAC
TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGAACC
AGACCGAGGGTTGCGGCAGCACATACTGGGCTTGAGCATGTGCTGGTACCACATTTCTCTTCATC
GAGGCACCATCTGATTCCGAAGAACCTAACCAACAGCATTG
Found at i:16831992 original size:416 final size:417
Alignment explanation
Indices: 16831409--16832190 Score: 1169
Period size: 416 Copynumber: 1.9 Consensus size: 417
16831399 TTAGCTGATT
* *
16831409 TTTTTTTTTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAAACCTT
1 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGCGCCAAAAAACCTT
* ** *
16831474 TCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
66 TCCAAAAAATTTTAAAAAATCCCAAACAGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
* *
16831539 GTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTACAAGCCA-GA
131 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTACAAGCCATAA
* * *
16831603 AAATGGCATTGGCACGTAAAAATATGAAGATGTGCCTAAACCCACCTACTACCTTATCGATCCAC
196 AAATGGCATTGGCACATAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT-CAC
* * * * *
16831668 GGCTTGCATATCCTGTCTCTCTGGCCGGCGTAGTGC-CTACCCG-TCC-GCTCGTTTCGTCGGAT
260 GGCTTGCACATCC-ATCTCTCTGGCCGACGTAGTGCTC-ACCCGCACCTGCTCGTTTCATCGGAT
16831730 AGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCAGCAGCACA
323 AGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCAGCAGCACA
16831795 TGCTGAGCTTGGGCATGTGCTGGTGCTGAA
388 TGCTGAGCTTGGGCATGTGCTGGTGCTGAA
* **
16831825 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACTTCTACCAAGTTTGGCGCCAAAACTCC-T
1 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGCGCCAAAAAACCTT
* ** *
16831889 TCCAAAAAATTTTTAAAAAATCCCAAACAGTAAAAAGTTTTGAAAATCTTGAAAAATAGAAAACG
66 TCCAAAAAA-TTTTAAAAAATCCCAAACAGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
* * *
16831954 AGTCGTCTTGCCATGAAACTTCACGTGAAGGGTTAAGGGACCATTGTATGAATTTACAAGCTATA
130 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTACAAGCCATA
*
16832019 AAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAC
195 AAAATGGCATTGGCACATAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAC
*
16832084 GGCTTGCACATCCATCTCTCTGGCCGACGTAGTGCTCGCCCGCCCACCCACCTGCTCGTTTCATC
260 GGCTTGCACATCCATCTCTCTGGCCGACGTAGTGCTCACCCG------CACCTGCTCGTTTCATC
* *
16832149 GGCTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
319 GGATAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
16832191 AACCAGAGTG
Statistics
Matches: 325, Mismatches: 30, Indels: 15
0.88 0.08 0.04
Matches are distributed among these distances:
415 33 0.10
416 181 0.56
417 58 0.18
422 2 0.01
423 51 0.16
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.26
Consensus pattern (417 bp):
TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGCGCCAAAAAACCTT
TCCAAAAAATTTTAAAAAATCCCAAACAGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTACAAGCCATAA
AAATGGCATTGGCACATAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCACG
GCTTGCACATCCATCTCTCTGGCCGACGTAGTGCTCACCCGCACCTGCTCGTTTCATCGGATAGC
TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCAGCAGCACATGC
TGAGCTTGGGCATGTGCTGGTGCTGAA
Found at i:16833243 original size:26 final size:26
Alignment explanation
Indices: 16833214--16833269 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
16833204 GTTGACTTAG
*
16833214 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
16833240 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
16833266 GCAT
1 GCAT
16833270 TCGAACCGGA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:16833473 original size:12 final size:12
Alignment explanation
Indices: 16833456--16833498 Score: 68
Period size: 12 Copynumber: 3.6 Consensus size: 12
16833446 GTACTGGTAC
16833456 TTGGCCCTTATA
1 TTGGCCCTTATA
*
16833468 TTGGCCCTTCTA
1 TTGGCCCTTATA
*
16833480 TTGGCCCCTATA
1 TTGGCCCTTATA
16833492 TTGGCCC
1 TTGGCCC
16833499 CCTATCCCTC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 28 1.00
ACGTcount: A:0.12, C:0.33, G:0.19, T:0.37
Consensus pattern (12 bp):
TTGGCCCTTATA
Found at i:16834175 original size:26 final size:26
Alignment explanation
Indices: 16834145--16834197 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16834135 GTTGACTTAG
* *
16834145 GCATACGGAGTTCATTCTCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16834171 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16834197 G
1 G
16834198 ATCGAACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16835073 original size:26 final size:26
Alignment explanation
Indices: 16835037--16835089 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16835027 GTCGACTTAG
*
16835037 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16835063 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16835089 G
1 G
16835090 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16835958 original size:25 final size:26
Alignment explanation
Indices: 16835907--16835958 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16835897 GTTGACTTAG
*
16835907 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16835933 GCATACAGAGTTCATT-CCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16835958 G
1 G
16835959 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 10 0.40
26 15 0.60
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16836834 original size:26 final size:26
Alignment explanation
Indices: 16836798--16836850 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16836788 GTTGACTTAG
*
16836798 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16836824 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16836850 G
1 G
16836851 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16837258 original size:896 final size:891
Alignment explanation
Indices: 16831819--16839288 Score: 9175
Period size: 896 Copynumber: 8.3 Consensus size: 891
16831809 ATGTGCTGGT
* *
16831819 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACTTCTACCAAGTTTGGCGCCAAAA
1 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * * *
16831884 CTCCTTCCAAAAAATTTTTAAAAAATCCCAAACAGTAAAAAGTTTTGAAAATCTTGAAAAATAGA
66 CT-CTTCGAAAAAA-TTTTAAAAAATCCCGAACCGTAAAAA-TTTTGAAAATCATGAAAAATAGA
*
16831949 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGGTTAAGGGACCATTGTATGAATTTACAAG
128 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
*
16832014 CTATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
193 CCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * *
16832079 AT-CACGGCTTGCACAT-CCATCTCTCTGGCCGACGTAGTGCTCGCCCGCCCACCCACCTGCTCG
258 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA--G-T-GCCCG-CC-CGC-CC-GCTCG
* *
16832142 TTTCATCGGCTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCAGAGT-GAGGG
315 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGA-TCGAGGG
* * ** * ** * * *
16832205 TTGGGGCAGCAGTATCGGTAGCACGCAGAGGGGTACTTGGCCGATCCCCGACTTACGCATCCCGC
378 TTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGC
* * * * *
16832270 CCCTTTGGCTGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACATAGGCATACAGAGTTCATT
443 CCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
* * * * *
16832335 CCCAGTCTCAGCATATGAAGTTCATTCCCAGTCTAAGATCAGACCGGTCCGAGGGTTGCGGCAGC
508 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GACCAGACCGAGGGTTGCGGCAGC
* * * * *
16832400 ACATACTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCA
572 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATAGTCGGAGCA
** * * * * * * *
16832465 TCATCGGAGAACCGGACCGACGGCATTAGCGTTCTGACGATCGGGGGGGCCG-GGGGGTGTGCGC
637 TCGCCGGAGAACCTGACAGGCGGCATTGGCGTTCCGACGAT-AGGGGGGCGGAGGGGGTGTGCGC
* * *
16832529 ACACGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCTC
701 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
*
16832594 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTGTACAGGTTTGCTGCCAGTAGCCATTAAAG
766 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* * *
16832659 TGTCTGAAATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTATACTTTGAGTTTTTA
831 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * * **
16832720 GCTG-ATTGTTTTTGTGCATGCCAACATAAATACAAGGATCGCATCTACCAAGTTTGGCTCCAAA
1 GCTGAATT-TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
** *
16832784 ACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAG
65 ACT-CTT-CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAA-TTTTGAAAATCATGAAAAATAG
* * *
16832849 AAAGCAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAA
127 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* *
16832914 GCCATAAAAATGGTATT-GC-CATGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTA
192 GCCATAAAAATGGCATTGGCACAT--AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * ** *
16832977 TCGATCCACAGCTTACGCATCCCGTCTCTCTGGCCGACGTAATGCCCGCCCGCCCATTTGTTTCG
255 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCG
* * * * *
16833042 TCGGTTGGCATAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATGGAGGGTTACGGT
320 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGC
* * * * * * * * * *
16833107 AACAAGATTGACAGCAGGCAGCGGGGGACCTGACCTATCCCTGACTTGCACATCCCGCCCCTCTG
385 AGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
* * * *
16833172 GCCGACTGAGTGCCCGCATGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
450 GCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * *
16833237 TAAGCATACGGAGTTCATTCCCAATCTAAGCATTCGAACCGGACCGAGGGTTGCAGCAGCACATG
515 TAAGCATACGGAGTTCATTCCCAGTCTAAG-A-TCG-ACCAGACCGAGGGTTGCGGCAGCACATG
* ** * * ** * ** * *
16833302 CTAGGCAT-GGGCATACGATGGTGCCACATTTTTCTTCACCGGGGCACTATAACCAGAGCATCGT
577 CTGGGC-TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATAGTCGGAGCATCGC
* * * ** * * * * *
16833366 CGGAGAACATGACCGACGAAATTGGCGATCTGACGATCGGGGGGCCGGGGGGGGTGGTGTGCACA
641 CGGAGAACCTGACAGGCGGCATTGGCGTTCCGACGATAGGGGGG-C--GGAGGG-GGTGTGCGCA
*
16833431 CATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCTTCTATTGGCCCCTATATTGG
702 CATGATGTGCGATGGG---T-G--C-TGG------TA---------C--TTGGCCCTTATATTGG
16833496 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
743 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* * * *
16833561 TTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATCGGGACACTTTTTTCAAATGGTCAAAAAAACT
808 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
*
16833626 TGTACACTTCAAGTTTTTA
873 TGTACACTTCGAGTTTTTA
** **
16833645 GCTG-ATTTTTAGGTGCATGAGAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
1 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * * * **
16833709 CTCCTTTCGAAAAAATTTT-AAAAATCTCGAACTGCAAATAGTTTCAAAAATCATGAAAAATAGA
66 CT-C-TTCGAAAAAATTTTAAAAAATCCCGAACCGTAAA-AATTTTGAAAATCATGAAAAATAGA
* *
16833773 AAATGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
128 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
** * *
16833838 CCATAAAAATGGCATTGGCACGCAGAAATATAAAGATGAGCCTAAACCCACCTACCACCCTATCG
193 CCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* **
16833903 ATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGTGTCA-TGCCCGCCTTCCCGTCCGCCCGCTC
258 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT-AGTGCCCG------C--CCGCCCGCTC
* * *
16833967 GTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTGCCAGTCTAAGATCGGA-CAGGATCGAGGG
314 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA-GATCGAGGG
* * * * * * * *
16834031 TTGCGGTAGTAGGATCAACATCACACAGAGGGGGACCC-AGCCGATCCCCGGCTTGCACATCGCA
378 TTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCG
* * * *
16834095 CCCCTCTGGCC-AGCTGAACGCCTGCGCGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
442 CCCCTCTGGCCGA-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * * * * *
16834159 TTCTCAGTTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAAACCAAGGGTTACGGTA
506 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG-ACCAGACCGAGGGTTGCGGCA
* *
16834224 GCACATGCTGGGCT-GGGCATGTGCTGGTGCCGTA-TTTTCTTCGTCGGGGCACCATCGTCGGAG
570 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATAGTCGGAG
* * ** * * *
16834287 CATCGCCGGAGAACCTAATC-GGCGGCATTGGGGTTCTAACGATCGGACGGGCCGA-GGGGTGTG
635 CATCGCCGGAGAACCTGA-CAGGCGGCATTGGCGTTCCGACGATAGG-GGGGCGGAGGGGGTGTG
*
16834350 CGCAGATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
698 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
*
16834415 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCATTA
763 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
*
16834480 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTA
828 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * *
16834544 GATGAATTTTTTTTTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
1 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* ** *
16834609 CTCTTTCTGAAAGAATTTTAAAAAATCCCGAAAGGTAAAAATTTTGAAAATCGTGAAAAATAGAA
66 CTC-TTC-GAAAAAATTTTAAAAAATCCCGAACCGTAAAAATTTTGAAAATCATGAAAAATAGAA
* **
16834674 AACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACTGTTGTATGAATTTACAAGC
129 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
**
16834739 CATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
194 CATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * * *
16834804 TCCATGACTTACGCATCCCGTCTCTTTGGCCGACATAGTGCCCGCCCGCCCGCTCGTTTCGTCGG
259 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGG
* * *
16834869 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCA
324 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCA
* * * *
16834934 GGATCGACAGCACACAGAGGGGGACCCGATCGATCCCCGGCTTGGGCATCCCGCCACTCTGGCC-
389 GGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * *
16834998 AGCTGAGCGCCCACACGCTCGTTTCGTGGGTCGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
454 A-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
16835063 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGGTAGCACATGTTGGG
518 GCATACGGAGTTCATTCCCAGTCTAAGATCG-ACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
16835128 CTCAGGG--TCGTGCTGGT-AC-CATGTTT-TTCTTC---G--CC--AG--GGCGCCATCGCCGG
582 CTC-GGGCAT-GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATAGTCGGAG-CATCGCCGG
* * * * * * * * * *
16835179 AGAACCTGACTGACGACATTGGGGTTCTGGCGATCGGGGGGGCCG-GGGGGTGTGTGCGCATGAT
644 AGAACCTGACAGGCGGCATTGGCGTTCCGACGAT-AGGGGGGCGGAGGGGGTGTGCGCACATGAT
16835243 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT-CC-C-TC--A--TC----A--
708 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
16835295 -A-ACCCCCTTAAAGAGTATTTGTGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGA
773 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
16835358 AATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTG
838 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * * **
16835411 GCTGAATTGTTTTGTGCATGCCAACAAAAACACAAGGATCATGTCTACCAAGTTTGGGGTGAAAA
1 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* *
16835476 CTCTTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAA-TTTGAAAATCATGAAAAATAGAA
66 CTC-TT-CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAATTTTGAAAATCATGAAAAATAGAA
* *
16835540 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTGCAAGC
129 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* ** *
16835605 CATAAAAATGGCTTTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
194 CATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
*
16835670 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCACACCCGCTCGTTTCA
259 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG----CCCGCTCGTTTCG
* * * * * * **
16835735 TCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTTTAAGAT-TGAACTAGACCAAGGGTTGCAA
320 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGATCGAGGGTTGCGG
* * * *
16835799 TAGCAGGATC-AGTAGCATGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTC
384 CAGCAGGATCGA-CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTC
* * * *
16835863 TGGCTGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
448 TGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * *
16835928 TCTAAGCATACAGAGTTCATT-CCAGTCTAAGATCGGACCAGACCGAGGGTTACGACAGCACATG
513 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GACCAGACCGAGGGTTGCGGCAGCACATG
* * * * *
16835992 CTGGGCTCGGGCATGTGCTGGTGTCACTTTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACC
577 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATAGTCGGAGCATCGCC
* * * * *
16836057 GGAGAACCTGACCA-GCAGCATTGGGGTTCC-AGGGATCAGGGGGGC--TGGGGG-GTGCGTACA
642 GGAGAACCTGA-CAGGCGGCATTGGCGTTCCGA-CGAT-AGGGGGGCGGAGGGGGTGTGCGCACA
* *
16836117 TGATGTCCG-TCGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGG
704 TGATGTGCGAT-GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* * *
16836181 GAACTCACTCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACTAGTAGCCATTAAAGTG
768 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* *
16836246 TCT-AGAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTA
833 TCTGA-AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * * * *
16836305 GCTGAATTGTTTTGTGCTTGCCAACAAAAATACAAGGATCACGACTACCATGTTTGGGGCGAAAA
1 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
**
16836370 CTCTGTCTGAAAAAATTTTAAAAAATCTTGAACCGTAAAAATTTTGAAAATCATGAAAAATAGAA
66 CTCT-TC-GAAAAAATTTTAAAAAATCCCGAACCGTAAAAATTTTGAAAATCATGAAAAATAGAA
* *
16836435 AACGAGTCATCTTGCCATGAAACTTCACGTGAAGGATTAAGGGACCATTGTATGAATTTACAAGC
129 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
16836500 CATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
194 CATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* *
16836565 TCCACGGCTTGCGCATCCCATTTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGG
259 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGG
* **
16836630 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGTGGTGGCA
324 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCA
* * *
16836695 GGATCAACAGCTCGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
389 GGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
** * * * * *
16836760 GTTAAGCGCCCACATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTGCCAGTCTAAG
454 ACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
*
16836825 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCCAGGGTTGCGGCAGCACATGCTGGGC
519 CATACGGAGTTCATTCCCAGTCTAAGATC-GACCAGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * *
16836890 TCCGGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATAGTCGGAGCATCGCCAGAGAA
583 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATAGTCGGAGCATCGCCGGAGAA
*
16836955 CCTGACAGGCGGTATTGGCGTTCCGACGATTAGGGGGGTCGGAGGGGGTGTGCGCACATGATGTG
648 CCTGACAGGCGGCATTGGCGTTCCGACGA-TAGGGGGG-CGGAGGGGGTGTGCGCACATGATGTG
* * *
16837020 TGATGGGTGCTGGTATTTGGCCCTTATAATGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
711 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
16837085 ACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGCCTGAAAT
776 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
16837150 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
841 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * * *
16837201 GCTGAATTTTTTTATGCATACCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGGCAAAA
1 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * * ** * *
16837266 CACTATCCAAACAAATTTTAAAAAATCCCGAATCGTAAAAAGTTTCAAAAATCTTGAAAAAGAGA
66 CTCT-TCGAAA-AAATTTTAAAAAATCCCGAACCGTAAAAA-TTTTGAAAATCATGAAAAATAGA
16837331 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
128 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* * * *
16837396 ACATAAAAATGGCTTTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
193 CCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * * * *
16837461 ATCCACAGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCACCTGCACACCCGCTCGTTTC
258 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG--C-CC-GCCCGCCCGCTCGTTTC
* * * * * * *
16837526 ATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGAT-TGAACTAGACCAAGGGTTGTG
319 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGATCGAGGGTTGCG
* * * * ** *
16837590 ACAGTAGGAAT-GGCAGCACGCAGAGGGGGACTCGACCGATCCCCAACTTGCGCATCCAGCCCCT
383 GCAGCAGG-ATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCT
* * *
16837654 CTGGCCGACTGAGCGCCTGCACGCTCGTTCCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCA
447 CTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* *
16837719 GTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACAT
512 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GACCAGACCGAGGGTTGCGGCAGCACAT
* * * * * * * *
16837784 GTTGGGCTCAGGCATGTGCTGGTGCTGCATTTTTCTTCATGGGGGCACCATCGTCGGATCATCGA
576 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATAGTCGGAGCATCGC
* * * * **
16837849 TGGAGAACCTGACCA-GCGGTATTGG-GTTTCCGGCGATCAGGGGGGC--CGGGGG-GTGCATAC
641 CGGAGAACCTGA-CAGGCGGCATTGGCG-TTCCGACGAT-AGGGGGGCGGAGGGGGTGTGCGCAC
*
16837909 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGG
703 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* * * **
16837973 GAACTCACTCCCCCTTAAAGAGCATTCGAGATTTTACAGGTTTGCTACTTGTAGCCATTAAAGTG
768 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* * *
16838038 TCTGGATTGGGGACACTTTTTTCAAATGGTCACAAAAGCTTGTACACTTCGAGTTTTTA
833 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * * **
16838097 GCTGAATTTTTTTATGCATACCAACAAAAATACAAGGATCACGTCTAGCAAGTTTGGGGTGAAAA
1 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * * * * *
16838162 CACCTTCCGAAAAAATTTTAAAAAATCCCGAACTGCAAAAAGTTTTGAAAATCGTAAAAAATCGA
66 C-TCTT-CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAA-TTTTGAAAATCATGAAAAATAGA
* * *
16838227 AAACGGGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACGATTGTGTGAATTTACAAG
128 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* * * * * *
16838292 CCCTAAAAATGGCATTGGCACACAGAAATAGGAAGATGTACCCAAACCCAACTACCACCCTATCG
193 CCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * *
16838357 ATCCACAGCTTGCGCATCCCATCTCTCTGGCCGACGTAGTGCCCGCCCTCTCGCCCCCCCGCACG
258 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG--C-C-CG----CCCGCTCG
* * * * * *
16838422 TTTCGTCAGTTGGCTTAGGCATACGAAGTTCATTCCTAGTCTAAGATCAAACCA-AACGGAGGGC
315 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATC-GAGGGT
* * * ** ** * *
16838486 TGCGACAGTAGGATCGATAGCACGTGGAGGGGGACCCGGTCGATCCCCGGGTTGCGCATCCCACC
379 TGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCC
* ** *
16838551 CCTCTGGCCGACTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAAAGTTCATTG
444 CCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
* * * **
16838616 CCAGTCTAAGCATACCGAGTTCATTCCCTGTCTAAGATCAGACCGGACCGAGGGTTGCGATAGCA
509 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GACCAGACCGAGGGTTGCGGCAGCA
* ** *
16838681 CATGCTGGGCTCGGGCATGTGCTGCTGCCATATTTTTCTTCATCGGGGCACC--A-TC---G--T
573 CATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATAGTCGGAGCAT
* * ** *
16838738 ---CGGAGAACCTGACTGGTGGCATTGAAGTTCCGACGA-ACGGGGAGGCCGGGGAGGGGGTGTC
638 CGCCGGAGAACCTGACAGGCGGCATTGGCGTTCCGACGATA-GGGG-GG-C--GGAGGGGGTGTG
* *
16838799 CGCACACGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAAC
698 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
*
16838864 CTCGAGAACTCACACCCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
763 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* *
16838929 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGGGTTTTTA
828 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
** * * *
16838993 GCTGAAAGTTTTTGTGCATGCCAACAAAAATACAAGGAACACATCTACAAAGTTTGGGGCCAAAA
1 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
*
16839058 CTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAATTTTGAAAATCGTGAAAAATAGAA
66 CT-CTTC-GAAAAAATTTTAAAAAATCCCGAACCGTAAAAATTTTGAAAATCATGAAAAATAGAA
* **
16839123 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACTGTTGTATGAATTTACAAGC
129 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
**
16839188 CATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
194 CATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * *
16839253 TCCATGACTTACGCATCCCGTCTCTTTGGCCGACGT
259 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
16839289 TTGCGCAGAT
Statistics
Matches: 5736, Mismatches: 664, Indels: 344
0.85 0.10 0.05
Matches are distributed among these distances:
866 188 0.03
867 131 0.02
868 73 0.01
869 57 0.01
870 201 0.04
871 5 0.00
872 6 0.00
875 1 0.00
876 2 0.00
877 3 0.00
878 51 0.01
879 8 0.00
880 43 0.01
881 7 0.00
882 6 0.00
883 101 0.02
884 3 0.00
885 2 0.00
886 2 0.00
887 1 0.00
888 6 0.00
889 29 0.01
890 2 0.00
891 207 0.04
892 389 0.07
893 81 0.01
894 146 0.03
895 606 0.11
896 905 0.16
897 343 0.06
898 8 0.00
899 180 0.03
900 529 0.09
901 592 0.10
902 22 0.00
903 19 0.00
904 1 0.00
905 1 0.00
907 1 0.00
908 3 0.00
910 2 0.00
914 2 0.00
916 3 0.00
917 1 0.00
919 1 0.00
920 1 0.00
923 217 0.04
924 70 0.01
925 165 0.03
927 58 0.01
928 20 0.00
929 32 0.01
930 5 0.00
931 198 0.03
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (891 bp):
GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
CTCTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAATTTTGAAAATCATGAAAAATAGAAAA
CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
TAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
CACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTT
GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCAGG
ATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGAC
TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
TACGGAGTTCATTCCCAGTCTAAGATCGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATAGTCGGAGCATCGCCGGAGAACCT
GACAGGCGGCATTGGCGTTCCGACGATAGGGGGGCGGAGGGGGTGTGCGCACATGATGTGCGATG
GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
Found at i:16837728 original size:26 final size:26
Alignment explanation
Indices: 16837699--16837751 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16837689 GTTGGCTTAG
*
16837699 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
16837725 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
16837751 G
1 G
16837752 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:16839731 original size:492 final size:493
Alignment explanation
Indices: 16838806--16839780 Score: 1749
Period size: 492 Copynumber: 2.0 Consensus size: 493
16838796 GTCCGCACAC
* * *
16838806 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCGAGA
1 GATGTGCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAACAAACCTCGAGA
16838871 ACTCACACCCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
66 ACTCACACCCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* ** * * *
16838936 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGGGTTTTTAGCTGAAAG
131 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTACACACTTCGAGTTTTTAGATGAAAG
16839001 TTTTTGTGCATGCCAACAAAAATACAAGGAACACATCTACAAAGTTTGGGGCCAAAACTCCTTCT
196 TTTTTGTGCATGCCAACAAAAATACAAGGAACACATCTACAAAGTTTGGGGCCAAAACTCCTTCT
16839066 GAAAAAATTTTAAAAAATCCCGAACCGTAAAAATTTTGAAAATCGTGAAAAATAGAAAACGAGTC
261 GAAAAAATTTTAAAAAATCCCGAACCGTAAAAATTTTGAAAATCGTGAAAAATAGAAAACGAGTC
*
16839131 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACTGTTGTATGAATTTACAAGCCATAAAAA
326 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACTGCTGTATGAATTTACAAGCCATAAAAA
16839196 TGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGAC
391 TGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGAC
16839261 TTACGCATCCCGTCTCTTTGGCCGACGTTTGCGCAGAT
456 TTACGCATCCCGTCTCTTTGGCCGACGTTTGCGCAGAT
16839299 GATGTGCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAACAAACCTCGAGA
1 GATGTGCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAACAAACCTCGAGA
16839364 ACTCACACCCCCTTAAAGAGA-ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
66 ACTCACACCCCCTTAAAGA-ACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
*
16839428 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTACACACTTCGAGTTTTTAGATGAAT
130 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTACACACTTCGAGTTTTTAGATGAAA
* * * * *
16839493 TTTTTTGTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTC
195 GTTTTTGTGCATGCCAACAAAAATACAAGGAACACATCTACAAAGTTTGGGGCCAAAACTCCTTC
16839557 TGAAAAAATTTTAAAAAAT-CCGAAACCGTAAAAATTTTGAAAATCGTGAAAAATAGAAAACGAG
260 TGAAAAAATTTTAAAAAATCCCG-AACCGTAAAAATTTTGAAAATCGTGAAAAATAGAAAACGAG
* *
16839621 TTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACTGCTGTATGAATTTACAAGCCATAAA
324 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACTGCTGTATGAATTTACAAGCCATAAA
16839686 AATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATG
389 AATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATG
16839751 ACTTACGCATCCCGTCTCTTTGGCCGACGT
454 ACTTACGCATCCCGTCTCTTTGGCCGACGT
16839781 AGTGCCTGCC
Statistics
Matches: 462, Mismatches: 18, Indels: 5
0.95 0.04 0.01
Matches are distributed among these distances:
491 3 0.01
492 260 0.56
493 198 0.43
494 1 0.00
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.28
Consensus pattern (493 bp):
GATGTGCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAACAAACCTCGAGA
ACTCACACCCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTACACACTTCGAGTTTTTAGATGAAAG
TTTTTGTGCATGCCAACAAAAATACAAGGAACACATCTACAAAGTTTGGGGCCAAAACTCCTTCT
GAAAAAATTTTAAAAAATCCCGAACCGTAAAAATTTTGAAAATCGTGAAAAATAGAAAACGAGTC
GTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACTGCTGTATGAATTTACAAGCCATAAAAA
TGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGAC
TTACGCATCCCGTCTCTTTGGCCGACGTTTGCGCAGAT
Found at i:16840014 original size:26 final size:26
Alignment explanation
Indices: 16839978--16840030 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16839968 GTCGACTTAG
*
16839978 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16840004 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16840030 G
1 G
16840031 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16840898 original size:25 final size:26
Alignment explanation
Indices: 16840847--16840898 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16840837 GTTGACTTAG
*
16840847 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16840873 GCATACAGAGTTCATT-CCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16840898 G
1 G
16840899 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 10 0.40
26 15 0.60
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16841771 original size:26 final size:26
Alignment explanation
Indices: 16841735--16841787 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16841725 GTTGACTTAG
*
16841735 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16841761 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16841787 G
1 G
16841788 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16842674 original size:26 final size:26
Alignment explanation
Indices: 16842636--16842688 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16842626 GTTGACTTAG
** *
16842636 GCATACGGTGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
16842662 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
16842688 G
1 G
16842689 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:16843249 original size:896 final size:889
Alignment explanation
Indices: 16839297--16843341 Score: 5346
Period size: 896 Copynumber: 4.6 Consensus size: 889
16839287 GTTTGCGCAG
* * *
16839297 ATGATGTGCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAACAAACCTCGA
1 ATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
*
16839362 GAACTCACACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
66 GAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* ** *
16839427 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTACACACTTCGAGTTTTTAGATGAA
130 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
**
16839492 TTTTTTTGTGCATGCC-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTT
195 TTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTGAAAACTCTTT
*
16839556 CTGAAAAAATTTTAAAAAAT-CCGAAACCGTAAAAATTTTGAAAATCGTGAAAAATAGAAAACGA
260 C-GAAAAAATTTTAAAAAATCCCG-AACCGTAAAAATTTTGAAAATCATGAAAAATAGAAAACGA
** *
16839620 GTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACTG-CTGTATGAATTTACAAGCCATA
323 GTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC-GATTGTATGAATTTACAAGCCATA
**
16839684 AAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
387 AAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * * *
16839749 -TGACTTACGCATCCCGTCTCTTTGGCCGACGTAGTGCCTGCCCGCCCGCTCGTTTCGTCGGTTG
452 CAG-CTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCTCGTTTCATCGGTTG
* * * *
16839813 GCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTG-TAGCAGCAGG
516 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGA-CAGCAGG
* * * *
16839877 ATCGGCAGCACACAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCTCTCTGGCCAGC
580 ATCGGCAGCACTCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * *
16839942 TGAGCGCTCGCACGCTCGTTTCGTGGGTCGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCA
645 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * ** *
16840007 TACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTATGGTAGCACATGTTGGGCTC
710 TACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGACAGCACATGCTGGGCTC
* * ** * *
16840072 AGG-GTCGTGCTGGTACCATGTTTTTCTTCGCCAGGGCA-C--CATCG----TC-A--GAGAACC
775 AGGCAT-GTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCATCGATCATCGACGGAGAACC
* * * * * * *
16840126 TGA-CTGACGACATTAGGGTTCCGGCGATCGGGGGGGTC-GGGGGTGTGTGCAC
839 TGACCAG-CGGCATTGGGGTTCCGACGATCAGGGGGGCCAGGGGGTGCGT--AC
* *
16840178 ATGATGTACAATGGGTGCTGGTACTTGGCTCTTATATTGGCCCCCTAT-CC-C-TC--A--TC--
1 ATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* *
16840234 -AA---AC-CCCCTTAAAGAGCATTTGTGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGT
66 GAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
*
16840294 CTGAAATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAAT
131 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * * * * *
16840358 TGTTTTGTGCATGCCAACAAAAACACAAGGATCATGTTTACCAAGTTTGGGGTGAAAACACTTTC
196 TTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTGAAAACTCTTT-
*
16840423 CGAAAAAATTTTAAAAAATCCCGAACCGCAAAAA-TTTGAAAATCATGAAAAATAGAAAACGAGT
260 CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAATTTTGAAAATCATGAAAAATAGAAAACGAGT
* *
16840487 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCG-TTGTATGAATTTGCAAGCCATAAA
325 CATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA-CGATTGTATGAATTTACAAGCCATAAA
* * * * *
16840551 AATGGCTTTGGCACGTAAAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
389 AATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACA
* *
16840616 GCTTGCGCATCCCGTCTCTCTGGCCAACATAGTGCCCGCCCACACACCCGCTCGTTTCATCGGTT
454 GCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG--C-C-CACCCGCTCGTTTCATCGGTT
* * * * *
16840681 GGCTTAGGCATAGGGAGTTCATTCCCATTTTAAGAT-TGAACTAGACCAAGGGTTGCGACAGCAG
515 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCAAGGGTTGCGACAGCAG
* * * ** *
16840745 GATCAGTAGCA-TGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCTTGCCCCTCTGGCTG
579 GATCGGCAGCACT-CAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * *
16840809 GCAGAGCACCCGCGCGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
643 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * *
16840874 CATAC-AGAGTTCATT-CCAGTCTAAGATCGGACCAGACCTAGGTTTACGACAGCACATCCTGGG
708 CATACGA-AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGACAGCACATGCTGGG
* * * * *
16840937 CTCGGGCATGTGCTGGTGTCACTTTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGGAGA
772 CTCAGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCATC-GATCATCGACGGAGA
* * * *
16841002 ACCTAACCAGCAGCATTGGGGTTCC-AGGGAT-AGGGGGGCCGGGGGGTGCGTAC
836 ACCTGACCAGCGGCATTGGGGTTCCGA-CGATCAGGGGGGCCAGGGGGTGCGTAC
** *
16841055 ATGATGT-CCGTCGGGTGCTGGTACTTGGCCCTTATATTGACCCCCTATCCCTCATCAAACCTCG
1 ATGATGTGCAAT-GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
* * * * *
16841119 AGAACTCACTCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACTATTTGCCATTAAAGT
65 AGAACTCAC-ACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
*
16841184 GTCT-AGAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT--AGTTTTTAGCTG
129 GTCTGA-AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * * *
16841246 AATTGTTTTGTGCTTGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGTGAAAACTCT
193 AATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTGAAAACTCT
* * *
16841311 GTCCGAAAAAATTTTAAAACATCCTGAACCGTAAAAATTTTGAAAATCATGAAAAATAGAAAACG
258 -TTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAATTTTGAAAATCATGAAAAATAGAAAACG
*
16841376 AGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
322 AGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACGATTGTATGAATTTACAAGCCATA
16841441 AAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
387 AAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * *
16841506 CGGCTTGCGCATCCCATTTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
452 CAGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCTCGTTTCATCGGTTGG
* * * * * **
16841571 CTTAGGCATATGGAGTTCATTCCCAGCCTAAGATCAGACCAGATCGAGGGTTGTGGTAGCAGGAT
517 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGACAGCAGGAT
* * *
16841636 CAAG-AGCTCGT-AGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
582 C-GGCAGCAC-TCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * *
16841699 TGAGCGCCCACATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTGCCAGTCTAAGCA
645 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * * *
16841764 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCCAGGGTTGCGGCAGCACATGCTGGGCTC
710 TACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGACAGCACATGCTGGGCTC
* * * * * *
16841829 AAGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATAATCGATGCATCGCCAGAGAACC
775 AGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCATCGAT-CATCGACGGAGAACC
* * * *
16841894 TGACCGGCGGCATTGGGGTTCCGACGATTAGGGGGGTCGGAGGGGGTGTGCGCAC
839 TGACCAGCGGCATTGGGGTTCCGACGATCAGGGGGG-C-CA-GGGG-GTGCGTAC
*
16841949 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
1 ATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
16842014 GAACTCACACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
66 GAACTCACAC-CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
*
16842079 CCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
130 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* ** ** * **
16842144 TTTTTTTGTGCATACCATTAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCAT
195 TTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTGAAAACTCTTT
* * * ** * * *
16842209 CCAAACAAATTTTAAAAAATCCAGAATCGTAAAAAGTTTCAAAAATCTTGAAAAAGAGAAAATGA
260 CGAAA-AAATTTTAAAAAATCCCGAACCGTAAAAA-TTTTGAAAATCATGAAAAATAGAAAACGA
* * *
16842274 GTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGACATAA
323 GTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACGATTGTATGAATTTACAAGCCATAA
* * * * *
16842339 AAATGGCTTTGGCACACAAAAATATGAAGATGTGCCTAAACCCACGTACTACCCTATCGATCCAC
388 AAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
16842404 AGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCAGCCGCACACCCGCTCGTTTCATCGGT
453 AGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC-G-C-C-CACCCGCTCGTTTCATCGGT
* * * * *
16842469 TGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGAT-TGAACTAGACCAAGGGCTGCGACAACA
514 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCAAGGGTTGCGACAGCA
* * *
16842533 GGAAT-GGCAGCACTCAGAGGGGGACTCGACCGATCCCCGGCTTGCGCATCCTGCCCCTATGGCC
578 GG-ATCGGCAGCACTCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * *
16842597 GGCTGAGCGCCTGCACGCTCGTTTCGTAGGTTGACTTAGGCATACGGTGTTCATTCCCAGTCTAA
642 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
16842662 GCATACGAAGTTCATTCCCAATCTAAGATCGGACCAGACCGATGGTTGCGACAGCACATGTTGGG
707 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGACAGCACATGCTGGG
* ** * *
16842727 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTTATGGGGGCACCATCGTCGGATCATCGACGGAGA
772 CTCAGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCATC-GATCATCGACGGAGA
* *
16842792 ACCTGACCAGCGGCATTGGGTTTCCGACGATCAGTGGGGCCAGGGGGTGCGTAC
836 ACCTGACCAGCGGCATTGGGGTTCCGACGATCAGGGGGGCCAGGGGGTGCGTAC
* *
16842846 ATGATGTGCAATGGGTGCTGGTACTTGGCCCTTCTATTGG-CCCCTATCCCTCATCAAACCTCGG
1 ATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* * *
16842910 GAACTCACTCCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACTAGTAGCCATTAAAGTG
66 GAACTCACACCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* *
16842975 TCTGGAATGGGGACACTTTTTTCAAATGGTCACAAAAGCTTGTACACTTCGAGTTTTTAGCTGAA
130 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* *
16843040 TTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTAGCAAGTTTGGGGTGAAAACTCCTT
195 TTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTGAAAACT-CTT
* * * * *
16843105 TCGAAAAAATTTTAAAAAATCCCGAACTGCAAAAAGTTTTGAAAATCGTAAAAAATCGAAAACGA
259 TCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAA-TTTTGAAAATCATGAAAAATAGAAAACGA
* * *
16843170 GTCTTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACGATTGTGTGAATTTACAAGCCCTAA
323 GTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACGATTGTATGAATTTACAAGCCATAA
* * * *
16843235 AAATGGCATTGGCACACAGAAATATGAAGATGTACCCAAACCCAACTACCACCCTATCGATCCAC
388 AAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* *
16843300 AGCTTGCGCATCCCATCTCTCTGGTCGACGTAGTGCCCGCCC
453 AGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCC
16843342 GCTCGCCCGC
Statistics
Matches: 2775, Mismatches: 309, Indels: 149
0.86 0.10 0.05
Matches are distributed among these distances:
865 237 0.09
866 139 0.05
867 5 0.00
868 75 0.03
869 197 0.07
870 1 0.00
871 6 0.00
872 1 0.00
874 2 0.00
876 5 0.00
877 43 0.02
878 10 0.00
879 35 0.01
880 6 0.00
881 44 0.02
882 1 0.00
884 2 0.00
887 2 0.00
888 195 0.07
889 123 0.04
890 12 0.00
891 104 0.04
892 248 0.09
893 38 0.01
894 170 0.06
895 11 0.00
896 490 0.18
897 233 0.08
898 5 0.00
899 2 0.00
900 5 0.00
901 323 0.12
902 5 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (889 bp):
ATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
GAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
TTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTGAAAACTCTTTC
GAAAAAATTTTAAAAAATCCCGAACCGTAAAAATTTTGAAAATCATGAAAAATAGAAAACGAGTC
ATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACGATTGTATGAATTTACAAGCCATAAAAA
TGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGC
TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCTCGTTTCATCGGTTGGCTTA
GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGACAGCAGGATCGGC
AGCACTCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAA
GTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGACAGCACATGCTGGGCTCAGGCAT
GTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCATCGATCATCGACGGAGAACCTGACCAG
CGGCATTGGGGTTCCGACGATCAGGGGGGCCAGGGGGTGCGTAC
Found at i:16845159 original size:26 final size:26
Alignment explanation
Indices: 16845123--16845175 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16845113 GTTGACTTAG
*
16845123 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAGTCCCAGTCTAA
16845149 GCATACGGAGTTCAGTCCCAGTCTAA
1 GCATACGGAGTTCAGTCCCAGTCTAA
16845175 G
1 G
16845176 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCAGTCCCAGTCTAA
Found at i:16845269 original size:904 final size:898
Alignment explanation
Indices: 16843366--16845893 Score: 3621
Period size: 904 Copynumber: 2.8 Consensus size: 898
16843356 ACGTTTCGTC
* * * *
16843366 AGTTCATTCCCTGTCTAAGATCAGACCGGACCGAGGGTTGCGATAGCACATGCTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGACCGGACAGAGGGTTGCGACAGCACATGCTGGGCTCGGGCA
* ** *
16843431 TGTGCTAGTGCCATATTTTTCTTCATCGGGGCACCA---TC---G----TCGGAGAACCTGACTG
66 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCTCGGAGAACCTGACTG
* * * * *
16843486 ATGGCATTGAGGTTCCAACGAA-CGG-GGAGGTCGGGGAGGGGGTGTCCGCACACGATGTGCGAT
131 ACGGCATTG-GGTTCCGAC-AATCGGAGG-GGCCGGGG-GGGTGTGT--GCACATGATGTGCGAT
* ** *
16843549 GGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTTGTCAAACCTCAAGAACTCACACCC
190 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTCGAGAACTCACA-CC
*
16843614 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGG
254 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * * *
16843679 ACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGGGTTTTTAGCTGAAATTTTTTGCGCA
319 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAAAGTTTTTGTGCA
*
16843744 TGCCAACAAAAATACAAGGAACACGTCTACAAAGTTTGGGACCAAAACTCCTTCCGAAAAAATTT
384 TGCCAACAAAAATACAAGGAACACGTCTACAAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
*
16843809 T-AAAAATCTCGAACCGTAAAAAGTTTCAAAAATC-ATGAAAAATAAAAAACGAGTCGTCTTGCC
449 TGAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGA-GAAAAATAGAAAACGAGTCGTCTTGCC
*
16843872 ATGAAACATCACGTGAAGGCTTAAGGGACCATTGTAAGAATTTACAAGCCATAAAAATGGCATTG
513 ATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* *
16843937 GTAGGCAGAAATATCAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGCAT
578 GTAGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
** *
16844002 CCCGTCTCTCTGGCCGACGTAGTGCCCG-C-CCG--C-CCGCTCGTTTCACCGGTTGACTTAGGC
643 CCCGTCTCTCTGGCCGACGTAGTGCCCGCCGCCGCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * * * *
16844062 ATATGGAGTTCATTCCCAGTGTAAGATCGGATAGGACCAAGGCTTACGGTAGAAGGATCGACAAC
708 ATATGGAGTTCATTCCCAGTCTAAGATCAGACAGAACCAAGGCTTACGGCAGAAAGATCGACAAC
* * * * * * ** ***
16844127 ATGCAGAGGGGGACCCGATCGATCCCCAGCTTGCGCATCTCGCCCCTTTGGCCGGCTGAGTGCCC
773 ATGCAAAGGGGGACCAGACCGATCCCCAGCTTGCACATCCCACCCCACTGGCCGGCTGAACACCC
* *
16844192 GCACGCTTGTTTCGTGGGTTGACTTAGGGATACGGAGTTCATTCCCAATCTAAGCATACGG
838 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGG
* * * * *
16844253 AGTTCATTCCCAGTCCAAGATCGAACTGGA-ACGAGGGTTGCGGCAGCACATGCTAGGCTCGGGC
1 AGTTCATTCCCAGTCTAAGATCGGACCGGACA-GAGGGTTGCGACAGCACATGCTGGGCTCGGGC
* *
16844317 ATGTGCTGGTGCCGCATTTTTCTTCGCCGAGGCACCATCG-CTGGAGCATCATCGGAGAACCTGA
65 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATC-TCGGAGAACCTGA
* *
16844381 CTGACGGCATTAGGGTTCCGACAATCGGAGGGGCCGGGGGGGTGTGTGCACATGATGTGTGTTGG
128 CTGACGGCATT-GGGTTCCGACAATCGGAGGGGCCGGGGGGGTGTGTGCACATGATGTGCGATGG
16844446 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTCGAGAACTCACACCCCT
192 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTCGAGAACTCACACCCCT
* *
16844511 TAAAGAGTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACA
257 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* *
16844576 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTAAAAGTTTTTATGCATGC
322 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAAAGTTTTTGTGCATGC
* *
16844641 CAAAAAAAATTACAAGGAACACGTCTACAAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTG
387 CAACAAAAA-TACAAGGAACACGTCTACAAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTG
* * * * *
16844706 AAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGAGAAAAATAGAAAATGAGTTGTCTTGGCATG
451 AAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGAGAAAAATAGAAAACGAGTCGTCTTGCCATG
* * *
16844771 AAACTTCACGTGAAGGCTTAAGGCACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
516 AAACATCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGTA
** * * *
16844836 CACAAAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCAC
581 GGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
*
16844901 ATCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCCCGCCAGCTCGTTTCGTCGGTTGGCTTAGGC
646 GTCTCTCTGGCCGACGTAGTGCCCG-CCG-CCGCCCGCC-GCTCGTTTCGTCGGTTGGCTTAGGC
* * * *
16844966 ATATGGAGTTAATTCCCAGTCTAAGATCAGACCA-AACCGAGGGTTACGGCA-ACAAGATCGGCA
708 ATATGGAGTTCATTCCCAGTCTAAGATCAGA-CAGAACCAAGGCTTACGGCAGA-AAGATCGACA
* * *
16845029 ACATGCAAAGGGGGACCA-AGCCGATCCTCGGCTTGCACATCCCACCCCACTGGCCGGTTGAACA
771 ACATGCAAAGGGGGACCAGA-CCGATCCCCAGCTTGCACATCCCACCCCACTGGCCGGCTGAACA
*
16845093 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
835 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGG
* * *
16845157 AGTTCAGTCCCAGTCTAAGATCGGACCAGACAGAGGGTTGCGACAGCATATGCTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGACCGGACAGAGGGTTGCGACAGCACATGCTGGGCTCGGGCA
* * *
16845222 TGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCTGGAGAACCTGACC
66 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCTC-GGAGAACCTGACT
* * *** * *
16845287 GGCGGCATTGGGGTTTCGGTGATCGGAGGGGCC-GGGGGGTGTGCGCACATGATGTGCAATGGGT
130 GACGGCATT-GGGTTCCGACAATCGGAGGGGCCGGGGGGGTGTGTGCACATGATGTGCGATGGGT
** * *
16845351 GCTGGTACTTGAACCTTATGTTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCGCTT
194 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTCGAGAACTCACACCC-CTT
* *
16845416 AAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACAC
258 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
16845481 TTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAAAGTTTTTGTGCATGCC
323 TTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAAAGTTTTTGTGCATGCC
*
16845546 AACAAAAATACAAGGAACACGTCTACAAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTGAA
388 AACAAAAATACAAGGAACACGTCTACAAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTGAA
* *
16845611 AAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
453 AAATCTCGAACCGTAAAAAGTTTCAAAAATCGAGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* *
16845676 ACATCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCATTAGTAGG
518 ACATCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGTAGG
*
16845741 CAGAAATATGAAGATGTGCCTAAACCCACCTACAACCCTATCGATCCACGGCTTGCGCATCCCGT
583 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * *
16845806 CTCTCTGGCCGATGTAGTGCCCGTCCGCCCGCCAGCCCGTTCGTTTCGTCGGTTGGCTTAGGCAT
648 CTCTCTGGCCGACGTAGTGCCCG-CCG-CCGCCCG-CCGCTCGTTTCGTCGGTTGGCTTAGGCAT
*
16845871 ACGGAGTTCATTCCCAGTCTAAG
710 ATGGAGTTCATTCCCAGTCTAAG
16845894 CATACGAAGT
Statistics
Matches: 1458, Mismatches: 148, Indels: 54
0.88 0.09 0.03
Matches are distributed among these distances:
887 85 0.06
889 1 0.00
893 1 0.00
894 134 0.09
895 123 0.08
896 200 0.14
897 10 0.01
898 42 0.03
899 3 0.00
900 3 0.00
902 1 0.00
903 398 0.27
904 454 0.31
905 3 0.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (898 bp):
AGTTCATTCCCAGTCTAAGATCGGACCGGACAGAGGGTTGCGACAGCACATGCTGGGCTCGGGCA
TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCTCGGAGAACCTGACTG
ACGGCATTGGGTTCCGACAATCGGAGGGGCCGGGGGGGTGTGTGCACATGATGTGCGATGGGTGC
TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTCGAGAACTCACACCCCTTAAA
GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAAAGTTTTTGTGCATGCCAAC
AAAAATACAAGGAACACGTCTACAAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTGAAAAA
TCTCGAACCGTAAAAAGTTTCAAAAATCGAGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACA
TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGTAGGCAG
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
TCTGGCCGACGTAGTGCCCGCCGCCGCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAG
TTCATTCCCAGTCTAAGATCAGACAGAACCAAGGCTTACGGCAGAAAGATCGACAACATGCAAAG
GGGGACCAGACCGATCCCCAGCTTGCACATCCCACCCCACTGGCCGGCTGAACACCCGCACGCTC
GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGG
Found at i:16845904 original size:26 final size:26
Alignment explanation
Indices: 16845867--16845919 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16845857 GTTGGCTTAG
*
16845867 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16845893 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16845919 G
1 G
16845920 ATTGGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16846926 original size:126 final size:126
Alignment explanation
Indices: 16846710--16846939 Score: 302
Period size: 126 Copynumber: 1.8 Consensus size: 126
16846700 CATCCCACCC
* *
16846710 CTCTGGCCGACTGAGCACCCGCACACTCATTTCGTAGGTTGACTTAGGCATACAGAGTTCATTCC
1 CTCTGGCCGACTGAGCACCCGCACACTCATTTCATAGGTTGACTTAGACATACAGAGTTCATTCC
*
16846775 CAATCAAAGCGTACAGAGTTCATTCCCA-ATCTAAGATCAAATCGACTTTCGCATCCCGTCA
66 CAATCAAAGCATACAGAGTTCATTCCCATA-CTAAGATCAAATCGACTTTCGCATCCCGTCA
* * * * * *
16846836 CTCTGGTCGGCTGAGCGCCCTCACGCTCATTTCATAGGTTGACTTAGACATA-TGAAGTTCATTC
1 CTCTGGCCGACTGAGCACCCGCACACTCATTTCATAGGTTGACTTAGACATACAG-AGTTCATTC
* * ** *
16846900 CCAGTCTAAGCATATGGAGTTGATTCCCATACTAAGATCA
65 CCAATCAAAGCATACAGAGTTCATTCCCATACTAAGATCA
16846940 GACCAGATCG
Statistics
Matches: 88, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
125 1 0.01
126 86 0.98
127 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.27
Consensus pattern (126 bp):
CTCTGGCCGACTGAGCACCCGCACACTCATTTCATAGGTTGACTTAGACATACAGAGTTCATTCC
CAATCAAAGCATACAGAGTTCATTCCCATACTAAGATCAAATCGACTTTCGCATCCCGTCA
Found at i:16847824 original size:26 final size:26
Alignment explanation
Indices: 16847788--16847840 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16847778 GTTGACTTAG
16847788 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
16847814 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16847840 G
1 G
16847841 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16848794 original size:899 final size:892
Alignment explanation
Indices: 16846824--16852371 Score: 6852
Period size: 899 Copynumber: 6.2 Consensus size: 892
16846814 AATCGACTTT
* * * * * * * *
16846824 CGCATCCCGTCACTCTGGTCGGCTGAGCGCCCTCACGCTCATTTCATAGGTTGACTTAGACATAT
1 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAT
* * * * *
16846889 GAAGTTCATTCCCAGTCTAAGCATATGGAGTTGATTCCCA-TACTAAGATCAGACCAGATCGAGG
66 GGAGTTCATTCCCAGTCTAAG-A-ATGGAGTTCATTCCCAGT-CTAAGATCGGACCGGACCGAGG
* * * *** *
16846953 GTTACGACAGCACATGCTGGGCTCGTGCATGTGCTGGTGCCATTTTTTTCTTCGTTGGGGCACCA
128 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
* * * * *
16847018 TCGTCAGAGCTTCGTCGGAGAACCTGACCTACGGCATTGGGGTTCCGACGATCGAGGGGGCCGGG
193 TCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTG-GGGGGCCGGG
*
16847083 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTC
257 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* *
16847148 ATCAAACCTCAAGTACTCACACCCCCTTAAAGAGCATTTGATATTTTACAGGTTTGCTGCCAGTA
322 ATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
*
16847213 GCCATTAAAGTGTCT-AGATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
387 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
16847277 TTTTCTA-CTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
452 TTTT-TAGCTGAATT-TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* ** * *
16847341 GCCAAAACTCATTTTGAAAAAAATTTT-AAAAATCTCGAACCACAAAAAGTTTGCAAAAAAATCG
515 GCCAAAACTCCTTCCG-AAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTT-C--AAAAATCA
*
16847405 TGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
576 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
*
16847470 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATAAAGATGTGCCTAAACCCACCTA
641 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * *
16847535 CCATCCTATCGATCCATGGCTTGCGTATCCCGTCTCTCTGGCCGACGTAGTGCCTACCCGCCTGC
706 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG----CCCG-CTGC
* * * * * * *
16847600 CCGCCCGCTCATTTGGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAATCTAAGACCTGACCG
766 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-CTG
** * * * ** **
16847665 GACCGAGGGTTGCAGCGGCAAGATCGGTAGCATGCAGAGGGGGACCCGGCCGATCATCAACTTA
830 GACCGAGGGTTGC-GTAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTA
* * * * * * *
16847729 AGCATCCCGCCCTTCTGGCCGGCTGAGCGCCCGTACGCTCGGTTCATTGGTTGACTTAGGCATAC
1 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAT
* *
16847794 AGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGG
66 GGAGTTCATTCCCAGTCTAAG-A-ATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGG
* * * *
16847859 TTGCGGCAGCACATGCTGGGCTCAGGCATTTGCTGGTGCCGCCTTTTCCTTCGTCGGGGCACCAT
129 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT
* * * * *
16847924 CGCCGGGGCATCGTCGGAGAACCTGATCGACGGCATTAGGGTTCCGACGATTGGGGGGAACAGGG
194 CGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGG-CCGGGG
* *
16847989 GGTGTGCGCACATGATGTGCGATAGGTGCTGGTACTTGTCCCTTATATTGGCCCCCTATCCCTCA
258 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* * ** *
16848054 TTAATCCTTTAGAACTCACACCCCCTTAAAGAGGATTTGAGATTTTACAGGTTTGCTGCCAGTAG
323 TCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* * *
16848119 CCATTAAAGTGTCTGAAATGGGGACACTCTTTTCCAACGGTCACAAAATCTTGTACACTTCGAGT
388 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
*
16848184 TTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGC
453 TTTTAGCTGAAT-TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
**
16848249 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAA
517 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAA
* * *
16848314 ATAGAAAATGTGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAAGAATTT
582 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * * * *
16848379 ACAAGCCATAAAAATGGCATTGGTATGCACAAATATGAAGATGTGCCTATACCCACCTACCACCT
647 ACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* *
16848444 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCTTTCCCGCCCGCTC
712 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGC-TGCCCGCCCGCTC
* * * *
16848509 ATTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCTAGTCTAAGATCAAGCTGGACCAAGGGT
776 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-AGCTGGACCGAGGGT
* * * * *
16848574 TGCAGCAGCAGGATCGGCATCACGCAGAGGGGGACCC-AGTCGATCCCCGGCTTG
840 TGC-GTAGCAGGATCGGTAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTA
* *
16848628 CGCATCCCGCCCCTCTGGCCGACTGACCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAT
1 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAT
* *
16848693 GGAGTTCATTCTCAGTCTAAGTAATGGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGG
66 GGAGTTCATTCCCAGTCTAAG-AAT-GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGG
* * * * *
16848758 TTGTGGTAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGAACCAT
129 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT
* *
16848823 CGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGCGGGCCGGCG
194 CGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGG-GGGCCGGGG
16848888 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
258 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* *
16848953 TTAATCCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
323 TCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
*
16849018 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGC
388 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* *
16849083 TTTTAGCTGAAATTTTTTGTGCATGCCAAAAAAAATACAAGGATGACGTCTACCAAGTTTGGGGC
453 TTTTAGCTG-AATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * * **
16849148 CAAAGCTCTTTTCGAAAAAAATTTAAAAAATCCCGAACCACAAAAAGTTTGCAAAAAAATTGTGA
517 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTT-C--AAAAATCATGA
* * * *
16849213 AAAATAAAAAACGAGTAGTCTTGCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTACGAA
579 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * * *
16849278 TTTACAAGCCATAAAAATGGCATTGACACACAGAAATATAAAGATGTGCCTAAACCCACCTAGCA
644 TTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * *
16849343 CCCTATCGATCCACAGCTTGTGCATCCCGTCTCTCTGGCCGACGTAGTG--CTC-GCCTGCCCGC
709 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCTGCCCGCCCGC
* * * **
16849405 TCGTTTCGTCGGTTAGCTTAGGCATACGGAATTCATTCCCAGTCTAAGATCA-CATCAGATTGAG
774 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGC-T-GGACCGAG
* * ** * *
16849469 GGTTGCGGTAGCAGGATCAGCAGCACATAGAGGGGGACCCGATCGATCCTCGGCTTA
837 GGTTGC-GTAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTA
* *
16849526 CGCATCCCGCCCCTCTGGCCAGCTGAGCG-CCGCACGCTCGTTTTGTGGGTTGAC-T-----TA-
1 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAT
* **
16849583 -G-G--------CA-T-T-----TGGAGTTCATTCCTAGTCTAAGATCGGACCAAACCGAGGGTT
66 GGAGTTCATTCCCAGTCTAAGAATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT
* * * *
16849631 ACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCG
131 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG
* * *
16849696 CCGGAGCATCGTCGGAGAACCTGACCGACGGGATTGGGGTCCCGACGATCAGGGGGGCCGTGGGG
196 CCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGAT-TGGGGGGCC--GGGG
* *
16849761 GGGGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
258 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
*
16849826 TCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCTGTAG
323 TCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* *
16849891 CCATTAAAGTGTCTGAAATGTGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATT
388 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
16849956 TTTTAGCTGAATTTTTTGGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
453 TTTTAGCTGAATTTTTT-GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * *
16850021 CAAAACGCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAAAA
517 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAA
* * *
16850086 ATAAAAAACGAGTCGTATTGCCATGAAAGTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
582 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* *
16850151 ACAAGCCATAAAAATGGCATTGGCATGCAGAAAATATGAAGATGTGCCCAAACCCACCTACCACC
647 ACAAGCCATAAAAATGGCATTGGCACGCAG-AAATATGAAGATGTGCCTAAACCCACCTACCACC
*
16850216 CTATCGATCCACGGCTTGCGCATCCCGTCTTTCTGGCCGACGTAGTGCCCGCCCGCCTGCCCGCC
711 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT----GCCCG-CTGCCCGCC
* * * * *
16850281 CGCTCGTTCCGTCGGTTGGCTTAGGCATACGGAATTCATTCCCAGTCTAAGATCAGATCAGATCG
771 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGCT-GGACCG
* *
16850346 AGGGTTGCGATAGCAGGATCGGTAGCACGCAGAGGGGGACTCGACCCATCCCCGGCTTA
835 AGGGTTGCG-TAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTA
* * * ** * *
16850405 TGCATCCCTCCCCTCTGGCCGGTTGAGCGCCCATACGCTCGTTTCGTGGGTTGACTTAGGTATAC
1 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAT
* * * * *
16850470 GGAGTTCATTCCCAGTCTAAGCATATAGAGTTCATTCCTAGTCTAAGATCGGACCAGACAGAGGT
66 GGAGTTCATTCCCAGTCTAAG-A-ATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGG
* * * * *
16850535 TTGCGACAGCACATGCTAGGCTCGGGCATGTGCTGGCGCCACATTTTTCTTC-ACGGTGGCACCA
129 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGG-GGCACCA
* * * *
16850599 T--------CA-C--CGGAGAACCCGACCGGCGACATTGTGGTTCCGACGA-T-------CGGGG
193 TCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGCCGGGG
* * * *
16850645 GGTGTGCCCACATGATGTGCGATGTGTGCTGGTACTGGGCCCTTATATTGGCCCCCTATCCTTCA
258 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* * *
16850710 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCTAGTAG
323 TCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* *
16850775 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTGACAAAATCTTGTACACTTAGAGT
388 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* *
16850840 TTTTAGCTAAATTTTTT-TGCACATACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
453 TTTTAGCTGAATTTTTTGTG--CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * * * * ** * *
16850904 CCAAAACTCCTTTC-AAAAAGATTTAAAAAAAATCCTGAACCA-TAAAATTTTTGAAAATCGTAA
516 CCAAAACTCCTTCCGAAAAA-ATTT-TAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGA
* * *
16850967 AAAATAGAAAACGATTCGTCTCGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAA
579 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
*** * * *
16851032 TTTGGGAGCCATAAAAATGGCAATGGCACCCAGAAATATGAAGATGTGCCTAAAACCACCTACCA
644 TTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * *
16851097 CCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--G-CCACCCAC
709 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCTGCCCGCCCGC
* ** *
16851159 TCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACTGGACTGAGG
774 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-CTGGACCGAGG
* ** * *
16851224 GTTGCGGTAGCAGGATTGGTAGCAAACAGAGGGGGACCCGACTGATCCCCGGCTTG
838 GTTGC-GTAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTA
* * * * * *
16851280 CGCATCCCACCCCTCCGGCCGGCTGAGCGCCCGCGCGTTCCTTTCGTGGGTGGACTTAGGCAT-T
1 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAT
*
16851344 CGGAGTTCATTCCCAGTCT----A---AG---------A-TC--AGATC-GA----ATCGAGGGT
66 -GGAGTTCATTCCCAGTCTAAGAATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
16851385 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG---CA--
130 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
* * * * *
16851445 --C----CATCGTCGAAGAACCCGATCGGCGGCATTGGGGTTCCGACGATCGGGGGGACCGGGGG
195 GCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGG-CC-GGGG
* * * * *
16851504 GGTGTGCGCACATGATGTGCTATGGTTGCTGGTATTTGGCCCTTATATTGGCTCCCTATCCCTCC
258 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
*
16851569 TCAAACCTCAAGAACTCACACCCCCTTAAAGGGCATTTCGA-ATTTTACAGGTTTGCTGCCAGTA
323 TCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTT-GAGATTTTACAGGTTTGCTGCCAGTA
*
16851633 GCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGC-TCGA
387 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA-CTTCGA
* * *
16851697 GTTTTTAGCTGAATTTTTTTGCGCATGCCAACAAAAATACAAGGATCATGTCTACCAGGTTTGGG
451 GTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * * *
16851762 GCTAAAACTCCTTCTGAAAAAATTTTAAAAAATCCTGAACCATAAAAATTTTCAAAAATCATGAA
515 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAA
*
16851827 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCCTAAGGGACCATTGTATGAAT
580 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* *
16851892 TTACAAGCAATAAAAATGGCATTGGCACAC-GAAAATATGAAGATGTGCCTAAACCCACCTACCA
645 TTACAAGCCATAAAAATGGCATTGGCACGCAG-AAATATGAAGATGTGCCTAAACCCACCTACCA
* *
16851956 CCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCG
709 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT--------GCCCGCT-G
** * * * * * *
16852021 CCCGCCCGCTCGTTTTATCGATTGGCTTAGGCATATGGAGTTCATTCCTAGTCTGAGATCGGATC
765 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGCT-
* * * ** * *
16852086 GGATCGAGGGTTACGATAGTAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCGTCAGCTTG
829 GGACCGAGGGTTGCG-TAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTA
* * * ** * * * **
16852151 TGCATACTGCCCCTCTGGCCGAATGAGCACCTGCACGCTTGTTTCGTGGGTTGTTTTAGGCAT-T
1 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAT
* * * *
16852215 CGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAGGATCAGACCGGACCGAGG
66 -GGAGTTCATTCCCAGTCTAAG-A-ATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGG
* * * * * * *
16852280 GTTGCAGTAGCACATGCTGTGCTCAGGCATGTGCTGGGGCCGTATTTTTCTTC-ACTGGGGCACC
128 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACC
16852344 ATCGCCGGAGCATCGTCGGAGAACCTGA
192 ATCGCCGGAGCATCGTCGGAGAACCTGA
16852372 AACCCATCTA
Statistics
Matches: 4049, Mismatches: 452, Indels: 281
0.85 0.09 0.06
Matches are distributed among these distances:
846 4 0.00
847 1 0.00
849 87 0.02
850 3 0.00
853 2 0.00
854 5 0.00
856 2 0.00
857 1 0.00
858 18 0.00
859 423 0.10
860 13 0.00
861 1 0.00
866 2 0.00
867 5 0.00
869 1 0.00
870 101 0.02
871 390 0.10
872 13 0.00
873 287 0.07
875 178 0.04
876 3 0.00
877 2 0.00
878 3 0.00
879 146 0.04
880 26 0.01
881 1 0.00
882 2 0.00
883 80 0.02
884 362 0.09
885 14 0.00
886 3 0.00
888 2 0.00
889 3 0.00
890 2 0.00
891 2 0.00
892 4 0.00
893 2 0.00
895 30 0.01
896 3 0.00
897 86 0.02
898 136 0.03
899 627 0.15
900 12 0.00
902 170 0.04
903 175 0.04
904 6 0.00
905 362 0.09
906 231 0.06
907 1 0.00
908 16 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (892 bp):
CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAT
GGAGTTCATTCCCAGTCTAAGAATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT
GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG
CCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGCCGGGGGGT
GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
AACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
TAGCTGAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
ACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAG
AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
GCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCTGCCCGCCCGCTCGTTTC
GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGCTGGACCGAGGGTTGCGTA
GCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTA
Found at i:16852024 original size:12 final size:12
Alignment explanation
Indices: 16852007--16852032 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
16851997 GCGTAGTGCC
16852007 CGCCCGCCCGCT
1 CGCCCGCCCGCT
16852019 CGCCCGCCCGCT
1 CGCCCGCCCGCT
16852031 CG
1 CG
16852033 TTTTATCGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.65, G:0.27, T:0.08
Consensus pattern (12 bp):
CGCCCGCCCGCT
Found at i:16852670 original size:26 final size:26
Alignment explanation
Indices: 16852641--16852693 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16852631 GTTCACTTAG
*
16852641 GCATACGGATTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16852667 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16852693 G
1 G
16852694 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16853569 original size:26 final size:26
Alignment explanation
Indices: 16853529--16853582 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
16853519 TGGGTTGACT
*
16853529 TAGGCATACGGAGTTCATTCCTAGTC
1 TAGGCATACGAAGTTCATTCCTAGTC
16853555 TAGGCATACGAAGTTCATTCCTAGTC
1 TAGGCATACGAAGTTCATTCCTAGTC
16853581 TA
1 TA
16853583 AGATCAGATC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.31
Consensus pattern (26 bp):
TAGGCATACGAAGTTCATTCCTAGTC
Found at i:16854464 original size:26 final size:26
Alignment explanation
Indices: 16854434--16854486 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16854424 GTTGACTTAG
*
16854434 GCATAC-AGAGTTCGTTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
16854460 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16854486 G
1 G
16854487 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16854937 original size:26 final size:26
Alignment explanation
Indices: 16854907--16854958 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16854897 GTTGACTTAG
*
16854907 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAATCTAA
*
16854933 GCATACGAAGTTTATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
16854959 AATCAGACCG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.33, C:0.25, G:0.13, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:16855838 original size:26 final size:26
Alignment explanation
Indices: 16855809--16855861 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16855799 GTTGACTTAG
* *
16855809 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16855835 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16855861 G
1 G
16855862 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16856489 original size:902 final size:897
Alignment explanation
Indices: 16854661--16858387 Score: 4748
Period size: 902 Copynumber: 4.1 Consensus size: 897
16854651 ATGTGCGATG
* * * * * *
16854661 CCCTATCGATCCACAGCTTGTGCATCCCGTTTCTCTGGTCGGCGTAGTACCCGCCCGCCCGCCCG
1 CCCTATCGATCCACGGCTTGCGCATCCCGTCTC-CTGGCCAGCGTAGTGCCCGCCCGCCCGCCCG
* * * * *
16854726 CTCATTTCGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCATTCTAAGATCAGATCGGACCGAG
65 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAG
* * * * * * * *
16854791 TGTTACGACAGCAGGATCGGCAGCACACGGAGGGGGACTCGGTCGATCCTCGGCTTGTGAATCCC
130 GGTTACGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCC
* * * ** *
16854856 GCCCGTCTGGTCTGCTGAGCGCTCGTTCGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCA
195 GCCCCTCTGGCCGGCTGAGCGCTCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
* * * *
16854921 TTCCCAGTCTAAGCATACGAAGTTTATTCCCAATCTAAAATCAGACCGGACCGAGGGTTGCGGCA
260 TTCCCAGTCTAAGCATACG-AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCA
* * * *
16854986 GCACATGCTGGGCTCGGGCATGTGCTGGGGCTGCATTTTTCTTC-TCCGGGGCACCATCACCGGA
324 GCACATGCTGGGCTCGGGCATGTGCTGGTGCTACATTTTTCTTCGT-CGGGGCACCACCGCCGGA
* * * * *
16855050 GCATCACTGGAGAACTTGACCGGCAGCATTGGGGTTCCGACGATCGGGGGGG-TCGGAGGGGGTG
388 GCATC-CCGGAGAACCTGA-C-GCGGCATTAGGGTTCCGACGATCGGGGGGGACCGG-GGGGG-G
*** * * *
16855114 TGTGTGTACATGATGTGTGATGTGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATC
448 TGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
16855179 AAACCTCGAGAACTCAC-ACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
513 AAACCTCGAGAACTCACAACCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
*
16855243 CATTAAAGAGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACGCTTCGAGTT
577 CATTAAAGAGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * **
16855308 TTTAGC-AGAATTTTTTTGTGCAAGCCAA-AACAAATAAAAGGATCACATCTACCTTGTTTGGGG
642 TTTAGCTA-AATTTTTTTGTGCATGCCAACAA-AAATACAAGGATCACATCTACCAAGTTTGGGG
* ** * *
16855371 CCAAAAATCCTTCCAAAAAAATTTTAAAAAATCTCGAACCTTAAAAAGTTTCCAAAATTGTGAAA
705 CCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCGTGAAA
* *
16855436 AATAAAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGCCTTAAGGGACCATTGTATGAATT
770 AATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* * * * * *
16855501 TACAAGCTATAAAAATGGTATTAGCATGCAAAAATATAAAGATGTGCCTAAACCAACCTACCA
835 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * **
16855564 TCCTAT-AATCCATGGGATGCGCATCCCGTCTCCATGGCCAGCGTAGTGCCCGCCCGCCCGCCCG
1 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCC-TGGCCAGCGTAGTGCCCGCCCGCCCGCCCG
* * * *
16855628 CTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAACATCGGACCGGACTGAG
65 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAG
* * * * *** *
16855693 GGTTGCGGCAGTAGGATCGGTAGCACACAGAGGGGGACACAATCGATCCCCGGCTTACGCATCCC
130 GGTTACGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCC
* *
16855758 GCCCCTCTGGCCAGCTGAGCGCTCGCACGCTCGTTCCATGGGTTGACTTAGGCATACGGAGTTCA
195 GCCCCTCTGGCCGGCTGAGCGCTCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
* * *
16855823 TTCCTAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTA
260 TTCCCAGTCTAAGCATAC-GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCA
* * *
16855888 GCACATGCTGGTCTCAGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCACCGCCGGAG
324 GCACATGCTGGGCTCGGGCATGTGCTGGTGCTACATTTTTCTTCGTCGGGGCACCACCGCCGGAG
* * * *
16855953 CATCGCCAGAGAACCTGACTAGTGGCATTAGGGTTCCGGCGATCAGGGGGG-CCGAGGGGGGGCT
389 CATC-CCGGAGAACCTGAC--GCGGCATTAGGGTTCCGACGATCGGGGGGGACCG-GGGGGGG-T
* *
16856017 GTGCACACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGACCCCCTATCCCTCATCA
449 GTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
*
16856082 AACCTCGAGAACTCA-AACCCCTTAAATAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
514 AACCTCGAGAACTCACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* * *
16856146 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAAT-TTGTACAGTTTGAGTTT
579 TTAAAGAGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC-AAAATCTTGTACACTTCGAGTTT
* * *
16856210 TTAGCTAAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGAGGCCA
643 TTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCA
* * * *
16856275 AAAATCTTTCCGAAAAAATTTTAGAAAATCTCGAATCACAAAAAGTTTCAAAAATCATGAAAAAT
708 AAAATCCTTCCGAAAAAATTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCGTGAAAAAT
* * * *
16856340 AAAAAATGAGTCGTCTTGCCATGAAACTTAACGTAAAGGCTTAAAGGACCATTGTATGAATTTAC
773 AAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * * *
16856405 AAGCCATAAAAATGACATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACGA
838 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* *
16856465 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCTGCCCGCCCGCCCG
1 CCCTATCGATCCACGGCTTGCGCATCCCGTCTC-CTGGCCAGCGTA--G--T----GCCCGCCCG
*
16856530 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCTCAGTCTAAGATCAGACC
57 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * *
16856595 GGACCGAGGGTTACGGCAACAGGATCGACAGCACACAGAGGGGGACCCTGCCGATCCCCGGCTTG
122 GGACCGAGGGTTACGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGGCCGATCCCCGGCTTG
* * * * *
16856660 CGCATCCCGCCCCTCTGGCTGGCTGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATAC
187 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCTCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC
* *
16856725 GAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGG
252 GGAGTTCATTCCCAGTCTAAGCATAC-GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGG
* * * * *
16856790 TTGCGGCAGCACATGCTGGACTTGGGCATGTGTTGGTGCTACATTTTTCTTCGCCGGGGCACCAT
316 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTACATTTTTCTTCGTCGGGGCACCAC
* ** * * *
16856855 CGCCGGAG-A--AC-TTG-ACC-G-C-CGGCATTAGGGTTTCGACAATCGGGGGGG-CCTGGGGC
381 CGCCGGAGCATCCCGGAGAACCTGACGCGGCATTAGGGTTCCGACGATCGGGGGGGACC-GGGGG
* * * * * * *
16856911 AGGTGT-AAGCGCATGATGTGTGATGGGTGCTGATACTTGGCCCTTATATTGGCCCTCTATGCCT
445 GGGTGTGCA-CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* * * *
16856975 CATCAAATCTCGAGAACTCACATCCCCTTAAA-ATGCCTTTGAGATTTTACAGGTTTGCTACCAG
509 CATCAAACCTCGAGAACTCACAACCCCTTAAAGA-GCATTTGAGATTTTACAGGTTTGCTGCCAG
* * *
16857039 TAGCCATTAAAGTGTCTGGAATGGGGACACTTTTTT-AAATGGTCACAAAATCTTGTTCACTTCG
573 TAGCCATTAAAGAGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * *
16857103 AGTTTTTAGTTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
638 AGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGG
* * *
16857168 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAACTCCCGAACCACAAAAAGTTTCAAAAATCGTGA
703 GGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCGTGA
*
16857233 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
768 AAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * * *
16857298 CTTACAAGCCATAAAAATGGCATTGGCTTGGCAGAAATATGAAGTTGTGCCTAAACCCACCTTCC
833 TTTACAAGCCATAAAAATGGCATTGGCAT-GCAGAAATATGAAGATGTGCCTAAACCCACCTACC
16857363 A
897 A
* * * * *
16857364 CCCTATCGATCCACGGCTTGCCGCATCCCATCCCTTTCTGGCCGATCGTATAGTTCCTCGCCTGC
1 CCCTATCGATCCACGGCTTG-CGCATCCCGT--C-TCCTGGCC-AGCG--TAGTGCC-CGCCCGC
* * *
16857429 CCGTTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCACAGTCTAAGATCAAACC
58 CCG-CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
** * ** * * * * *
16857494 AAATCGAGGGTTGTGGCAGCAGGATTGGCAGCA-AGTATACGGGGACCCGGCCAATCCCCGGCTT
122 GGACCGAGGGTTACGGCAGCAGGATCGGCAGCACA-CAGAGGGGGACCCGGCCGATCCCCGGCTT
* * * * *
16857558 GTGCATCCCACCCCTCTGGTCGGCTGAGTGAC-CGCACGCTCATTTCATGGGTTGACTTAGGCAT
186 GCGCATCCCGCCCCTCTGGCCGGCTGAGCG-CTCGCACGCTCGTTTCATGGGTTGACTTAGGCAT
* *
16857622 ACGGAGTTCATTCCTAGTCTAAGCATACCGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAG
250 ACGGAGTTCATTCCCAGTCTAAGCATA-CGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAG
* * * *
16857687 GGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGATGGTGCCACATTTTTCTTCGTCGGGACACC
314 GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTACATTTTTCTTCGTCGGGGCACC
* * * * *
16857752 ACCGCCGGAGCTTCCTGGGAGAACCTGACCGACGACATTGGGGTTTCGACGATC-GGGGGGACC-
379 ACCGCCGGAGCATCC-CGGAGAACCTGA-CG-CGGCATTAGGGTTCCGACGATCGGGGGGGACCG
* * * **
16857815 -GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGCACTGGGCCCTTATATTGGCCCGTTATC
441 GGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * *
16857879 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA-TTGAGATTTTATAGGTTTGCTTCC
506 CCTCATCAAACCTCGAGAACTCACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
16857943 AGTAGCCATTAAAGAGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
571 AGTAGCCATTAAAGAGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* *
16858008 CGAGTTTTTAGCTGAATTATTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTT
636 CGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTT
* * * * ** *
16858073 GGGGCCAAAACTCCTTCAGAAAAAATTTAAAAAAATC-CTGAACCGCAAAAAGTTTTGAGAATCG
701 GGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCTC-GAACCACAAAAAGTTTCAAAAATCG
* * *
16858137 TGAAAAATAGAAAACGAGTCGTTTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTAT
765 TGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
** *
16858202 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGCACCTAAACACACCTA
830 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
16858267 CCA
895 CCA
* * *
16858270 CCCTATCGATCCTCGGCTTGCGCATCCCGTCTTTCTGGCC-GACGTAGT----GCCCGCTCGCCC
1 CCCTATCGATCCACGGCTTGCGCATCCCGTC-TCCTGGCCAG-CGTAGTGCCCGCCCGCCCGCCC
* * *
16858330 GCTCGTTTCGTCGGTTGGCTTAGGCATTCGGAGTTCATTCCTAGTCTAAGATCGGACC
64 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
16858388 AGATCAAGGG
Statistics
Matches: 2468, Mismatches: 301, Indels: 119
0.85 0.10 0.04
Matches are distributed among these distances:
894 55 0.02
895 7 0.00
897 8 0.00
898 304 0.12
899 442 0.18
900 16 0.01
901 324 0.13
902 499 0.20
903 23 0.01
904 5 0.00
905 15 0.01
906 112 0.05
907 321 0.13
908 2 0.00
909 7 0.00
910 328 0.13
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (897 bp):
CCCTATCGATCCACGGCTTGCGCATCCCGTCTCCTGGCCAGCGTAGTGCCCGCCCGCCCGCCCGC
TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGG
GTTACGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCG
CCCCTCTGGCCGGCTGAGCGCTCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
TCCCAGTCTAAGCATACGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGC
ACATGCTGGGCTCGGGCATGTGCTGGTGCTACATTTTTCTTCGTCGGGGCACCACCGCCGGAGCA
TCCCGGAGAACCTGACGCGGCATTAGGGTTCCGACGATCGGGGGGGACCGGGGGGGGTGTGCACA
CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
AGAACTCACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGA
GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAA
ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAATCCT
TCCGAAAAAATTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACG
AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
Found at i:16856748 original size:26 final size:26
Alignment explanation
Indices: 16856719--16856771 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16856709 GTTGACTTAG
16856719 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
16856745 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16856771 G
1 G
16856772 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16857648 original size:26 final size:26
Alignment explanation
Indices: 16857618--16857670 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16857608 GTTGACTTAG
* *
16857618 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
16857644 GCATACCGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
16857670 G
1 G
16857671 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCCAGTCTAA
Found at i:16858879 original size:713 final size:710
Alignment explanation
Indices: 16857644--16859118 Score: 2168
Period size: 713 Copynumber: 2.1 Consensus size: 710
16857634 CCTAGTCTAA
* * * **
16857644 GCATACCGAGTTCATTCCCAGTCTAAGATCGGACC-GAACCGAGGGTTGTGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ATCAAGGGTTGCAGCAGCACATGCTGG
* * ** * *
16857708 GCTCGGGCATGTGATGGTGCCACATTTTTCTTCGTCGGGACACCACCGCCGGAGCTTCCTGGGAG
65 GCTCGGACATGTGATGGTGCCACATTTTTCCTCACCGGGACACCACCGCCGGAGCATCCTCGGAG
* * **
16857773 AACCTGACCGACGACATTGGGGTTTCGACGATCGGGGGGACCGGGGGGTGTGCGCACATGATGTG
130 AACCTGACCGACGACATTAGGGTTTCGACAATCGGGGGGACCGGGGGGTGTAAGCACATGATGTG
*
16857838 CGATGGGTGCTGGCACTGGGCCCTTATATTGGCCCGTTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGCACTGGGCCCTTATATTGGCCCGCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
16857903 ACCCCCTTAAAGAGCATTGAGATTTTATAGGTTTGCTTCCAGTAGCCATTAAAGAGTCTGAAATG
260 ACCCCCTTAAAGAGCATTGAGATTTTACAGATTTGCTACCAGTAGCCATTAAAGAGTCTAAAATG
*
16857968 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTATTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTATTTTGT
**
16858033 GCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCAGAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGCACCAAAACTCCTTCAGAAAAAA
** * * *
16858098 TTTAAAAAAATCCTGAACCGCAAAAAGTTTTGAGAATCGTGAAAAATAGAAAACGAGTCGTTTTG
455 TTTAAAAAAATCCCAAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACGAGTCGTCTTG
* *
16858163 CCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGAGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
16858228 TGGCATGCAGAAATATGAAGATGCACCTAAACACACCTACCACCCTATCGATCCTCGGCTTGCGC
585 TGGCATGCAGAAATATAAAGATGCACCTAAACACACCTACCACCCTATCGATCCACGGCTTGCGC
* *
16858293 ATCCCGTCTTTCTGGCCGACGTAGT-GCCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAG
650 ATCCCGTCTCTCTGGCCGACGTAGTCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* *
16858353 GCATTCGGAGTTCATTCCTAGTCTAAGATCGGACCAGATCAAGGGTTGCAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCAAGGGTTGCAGCAGCACATGCTGGG
* * * *
16858418 CTCGGACATGTGCTGGTGCCACATTTTTCCTCACCGGGGCACCATCGCCGGAGCATCGTCGGAGA
66 CTCGGACATGTGATGGTGCCACATTTTTCCTCACCGGGACACCACCGCCGGAGCATCCTCGGAGA
* * * *
16858483 ACCTGACCTACGGCATTAGGGTTTTGACAATCGGGGGGGCCTGGGGAGGGTGTAAGCACATGATG
131 ACCTGACCGACGACATTAGGGTTTCGACAATCGGGGGGACC--GGG-GGGTGTAAGCACATGATG
* * * * *
16858548 TGTGATGGGTGCTGGTACTTGTCCCTTATATTGGCCAC-CTATGCCTCATCAAACCTCGAGAACT
193 TGCGATGGGTGCTGGCACTGGGCCCTTATATTGGCC-CGCTATCCCTCATCAAACCTCGAGAACT
* * *
16858612 CACATCCCCTTAAAGAGCCTTTGAGATTTTACAGATTTGCTACCAGTAGCCATTAAAGTGTCTAA
257 CACACCCCCTTAAAGAG-CATTGAGATTTTACAGATTTGCTACCAGTAGCCATTAAAGAGTCTAA
*
16858677 AATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATCT-T
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAAT-TAT
*
16858741 TTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGCACCAAAACTCCTTCCGA
385 TTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGCACCAAAACTCCTTCAGA
* * * * *
16858806 AAAAATTTTAAAAACTCCCAAACCGTAAAACG-TTTGAAAAATCGTGAAAAATAAAAAATGAGTC
450 AAAAATTTAAAAAAATCCCAAACCGCAAAAAGTTTTG-AAAATCGTGAAAAATAAAAAACGAGTC
16858870 GTCTTGCCATGAAACTTCACGAGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
514 GTCTTGCCATGAAACTTCACGAGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
** *
16858935 TGGCATTGGCATGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
579 TGGCATTGGCATGCAGAAATATAAAGATGCACCTAAACACACCTACCACCCTATCGATCCACGGC
* *
16859000 TTGTGCATCCCGTCTCTCTGGGCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGG
644 TTGCGCATCCCGTCTCTCTGGCCGACGTAGT-------CGCCCGCCCGCCCGCTCGTTTCGTCGG
*
16859065 TTGGCTTTG
702 TTGGCTTAG
* *
16859074 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAGCAGATCGAAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATC-AAGG
16859119 TTGTGGCAAC
Statistics
Matches: 680, Mismatches: 69, Indels: 21
0.88 0.09 0.03
Matches are distributed among these distances:
709 146 0.21
710 1 0.00
711 3 0.00
712 92 0.14
713 364 0.54
714 1 0.00
721 69 0.10
722 4 0.01
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.25
Consensus pattern (710 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCAAGGGTTGCAGCAGCACATGCTGGG
CTCGGACATGTGATGGTGCCACATTTTTCCTCACCGGGACACCACCGCCGGAGCATCCTCGGAGA
ACCTGACCGACGACATTAGGGTTTCGACAATCGGGGGGACCGGGGGGTGTAAGCACATGATGTGC
GATGGGTGCTGGCACTGGGCCCTTATATTGGCCCGCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTGAGATTTTACAGATTTGCTACCAGTAGCCATTAAAGAGTCTAAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTATTTTGTG
CATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGCACCAAAACTCCTTCAGAAAAAAT
TTAAAAAAATCCCAAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGC
CATGAAACTTCACGAGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGCAGAAATATAAAGATGCACCTAAACACACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGACGTAGTCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
Found at i:16860528 original size:873 final size:868
Alignment explanation
Indices: 16858329--16862846 Score: 5353
Period size: 921 Copynumber: 5.1 Consensus size: 868
16858319 CCCGCTCGCC
* * * * * * * *
16858329 CGCTCGTTTCGTCGGTTGGCTTAGGCATTCGGAGTTCATTCCTAGTCTAAGATCGGACCAGATCA
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCG
* * ** * *
16858394 AGGGTTGCAGCAGCACATGCTGGGCTCGGACATGTGCTGGTGCCACATTTTTCCTCACCGGGGCA
66 AGGGTTGCGGCAGCACATGCTGGGCTAGG-CATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCA
** * * ** * *
16858459 CCATCGCCGGAGCATCGTCGGAGAACCTGACCTACGGCATTAGGGTTTTGACAATCGGGGGGGCC
130 CCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATT-GGGGTCCGGCGATC-GGGGGGCC
** * *
16858524 TGGGGAGGGTGTAAGCACATGATGTGTGATGGGTGCTGGTACTTGTCCCTTATATTGGCCACCTA
193 --GGG-GGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * * * *
16858589 TGCCTCATCAAACCTCGAGAACTCACATCCCCTTAAAGAGCCTTTGAGATTTTACAGATTTGCTA
255 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
16858654 CCAGTAGCCATTAAAGTGTCTAAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACAC
320 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * *
16858719 TTCGAGTTTTTAGCTAAATCTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGT
385 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
** * * * *
16858784 TTGGCACCAAAACTCCTTCCGAAAAAATTTTAAAAACTCCCAAACCGTAAAACGTTTGAAAAATC
450 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATC
* * *
16858849 GTGAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCACGAGAAGGCTTAAGGGACCATTGTA
515 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* *
16858914 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATAAAGATGTGCCTAAACCCACCT
580 TGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCT
* ** *
16858979 ACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGGCGACGTAGTGCCCGCCCGCCCG
645 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGCACG-CGTAGT----GCCCGCCCA
* *
16859044 CCCGCCCGCTCGTTTCGTCGGTTGGCTTTGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAGC
705 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * * * *
16859109 AGATCGAAGGTTGTGGCAACAGGGTTGGCAGCACGTAAAGGGGGACCCGGT-GAATCCCCGGCTT
770 GGATCGAGGGTTGTGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGGTCG-ATCCCC-GCTT
* * * *
16859173 GCACATCTTGCCCCTCTGGCCGACTGAGCGCCGGCA
833 GCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCA
*
16859209 CGCTCGTTTCATGGGTTGACTTAGGCATACAGTGTTCATTCCCACTCTAAGCATATGGAGTTCAT
1 CGCTCGTTTCGTGGGTTGAC-T-----T--AG-G--------CA---T-A-C----GGAGTTCAT
* * * *
16859274 TCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGAAGCACATGCTGGGGGTGGGCATGTGCTG
40 TCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCT-GGGCTAGGCATGTGCTG
** * * * *
16859339 GTGCCGCCTTTTTCTTCGCTGGGGCACCATCGTCGGAGCATCGCC-GAGAACCTGATCGACGGCA
104 GTGCCGTATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCA
* *
16859403 TTAGGGTTCCGGCAATCGGGTGGGCCGGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGT
169 TT-GGGGTCCGGCGATCGGG-GGGCC--GGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGT
*
16859468 ACTCGG-CCTTATATTGG--CCCTAT-CCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAG
230 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
** * ** * *
16859528 CATTTGAGATTTTACAGGTTTGCTGCCAACAACTTTTAAAGGGTCTAAAATGGGGACATTTTTTT
295 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTT
* *
16859593 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTCGCTGAATTTTTTTTTGCATGCCAACAAA
360 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * *
16859658 AATAAAAGGATCACTTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAGTTTAAAAAATCC
425 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* * * * *
16859723 CAAACCGCAGAAAGTTTCAAAAATCATGAAAAATATAAAACAAGACGTCTTGCCATGAAACTTCA
490 CAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* **
16859788 TGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAA
555 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAA
*
16859853 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCT
620 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
** * *
16859918 AATAAGCGTAGTGCCCGCCCACCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCA
685 -GCACGCGTAGTGCCCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* *
16859983 TTCCTAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAGCAGGATCGACAGCACGTAGAGGGGG
749 TTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAGCAGGATCGGCAGCACGTAGAGGGGG
* * * * *
16860048 ACCCAG-CTGATCCTCCGCTTACGCATCCTACCCCTCTGGCCGGTTGAGCGCCCGTA
814 ACCCGGTC-GATCC-CCGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCA
*
16860104 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGGTCAGACCGGACCG
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCG
* * *
16860169 AGGGTTGCGGTAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGTATTTTTCTTCGTCAGGGCA
66 AGGGTTGCGGCAGCACATGCTGGGCT-AGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCA
* * *
16860234 CCATCGCCTGAGCATCACCGGAGAACATGACCGGCGGCATTGGGGTCCAGGCGATCAGGGGGGCC
130 CCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTCC-GGCGATC-GGGGGGCC
* * **
16860299 GAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACAAGGCCCTTATATTGGCCCCCTATCC
193 GGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
16860364 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
258 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* *
16860429 GTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTTAAATGGTCACAAAATCTTGTACACCTC
323 GTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * *
16860494 GAGTTTTTAGCTGAATTTTTTTATGCAGGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTG
388 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
** * * * * * **
16860559 AAGCCAAAAATCCTTCCAAAAAAATTTTCAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTG
453 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTG
*
16860624 AAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
518 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* *
16860689 ATTTACAAGCCATAAAAATGGCATTGGCATGTAGGAATCTGAAGATGTGCCTAAACCCACCTACC
583 ATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACC
* *
16860754 ACCCTATCGATCCACGGCTTGTGCATCCCGTCTTTCTGGC-CGGCGTAGTGCCCGCCCGCCCACC
648 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT-GCAC-GCGTAGT----GCCCGCCCACC
* * *** * *
16860818 CGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTAATAGTCTAATATCAAACCGG
707 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
* * *** * * * *
16860883 ATTGAGGGTTGTGGTAGCCTAATCGACAACACGTAGAGGGGGACCCGGTCGATCCCTGGCTTACG
772 ATCGAGGGTTGTGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGGTCGATCCC-CGCTTGCG
* *
16860948 CATCCTACCCCTCTTGCCGGCTGAGCGCCCGCA
836 CATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCA
* *
16860981 CGCTTGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCAT
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---A-
** *
16861046 TCCCTGTCTAAGATCGAATCAGACTGAGGGTTGTTGCAGCACAATGCTGGGCTAGGGCATTTGCT
58 ---C---C---G---G-A-C---C-GAGGGTTGCGGCAGCAC-ATGCTGGGCTA-GGCATGTGCT
* * *
16861111 GGTGGCCACATTCCATTTTTTCATTCGCCGGGGCACCATCAGTCGGAGCATCATC-GAGAAACGC
103 GGT-G-C-C-GT--A-TTTTTC-TTCGCCGGGGCACCATC-GCCGGAGCATCACCGGAG-AAC-C
* * * * *
16861175 TAACCGACGGCATTGGGGTTTCCCGTGCGTATCAGTGGATGTCGGGGGGGGTGTGCACACATGAT
157 TGACCGACGGCATTGGGG--T-CCG-GCG-ATC-G-GG-GGGC-CGGGGGGTGTGCGCACATGAT
* ** *
16861240 GTGTGATGGGTGCTGGTCCTTGGATCTTATATAGGCCCCCTATCCCTCATCAAACCTCGAGAACT
213 GTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
*
16861305 CACAGCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
278 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * * * *
16861370 AATGGGGACACTTTTATCAAATGGTCACAAAATCTTGTACAGTTCGAGTTTCTAGCTGAATTTTA
343 AATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* *
16861435 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTCCAAA
408 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
** * *
16861500 AAAATTTTAAAAAATCCTGAACCACAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGT
473 AAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
16861565 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
538 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
16861630 GCATTGGCATGTAGAAATATGAAGATGTGCCTAAGCCCACCTACCACCCTATCGATCCACGGCTT
603 GCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
16861695 GCGCATCTCGTCTCTTTGACAGGCGTAATGCCCGCCCACCCGCCTGCCCGCTCGTTTCGTCGGTT
668 GCGCATCCCGTCTCTCTG-CACGCGTAGTGCCCGCCCA--C-CC-GCCCGCTCGTTTCGTCGGTT
** * * ** * *
16861760 GGCTTAGGCATACGGAGTTCATTCCCAGTCTATTATCAGACCGGACCGAGGGATACGGTAGTAGG
728 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAGCAGG
* * * * *
16861825 ATCGGTAGCACGTAGAGGGGGACCCGATCGATGCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGC
793 ATCGGCAGCACGTAGAGGGGGACCCGGTCGAT-CCCCGCTTGCGCATCCTGCCCCTCTGGCCGGC
16861890 TGAGCGCCCGCA
857 TGAGCGCCCGCA
*
16861902 CGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---A-
* * *
16861967 TGCTAGTCTAAGATTGGTCCAGACCGAGGGTTGTGACAGCACATGCTGGGCTTGGGCATGTGCTG
58 --C----C--------G----GACCGAGGGTTGCGGCAGCACATGCTGGGC-TAGGCATGTGCTG
** * * * *
16862032 GTGCCGTATTTTTCTTCATCGGGGCACCGTTGCCAGAGCATCACCGAAGAACCTGACCGACGGCA
104 GTGCCGTATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGC-
* * * **
16862097 ATAGGGTTCCGGTGATCGGGGGGCTAGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACT
168 ATTGGGGTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACT
* *
16862162 TGGCCCTTATATTGG-CCCCTTTCCCTCATCAAACCTTTGAGAACTCACACCCCCTTAAAGAGTC
233 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCGAGAACTCACACCCCCTTAAAGAG-C
*
16862226 ATTTGAGATTTTACAGGTTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
296 ATTTGAGATTTTACAGG-TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTT
16862291 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTTGTGCATGCCAACAA
360 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTTGTGCATGCCAACAA
* *
16862356 AAATA-AAGGATCACGTCTACC-AGTTTGGGGCCAAAACTGCTTCCGAAAAAGTTTTAAAAAATC
424 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
* * * * *
16862419 TCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGACAACGAGCCGTCTGGCCATGAAACTTC
489 CCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * *
16862484 GCGTGAAGGCTTAATGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
554 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAA
16862549 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
619 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * * *
16862614 TGGC-CGACGTAGTGCCTGCCCGCCCGCCCACTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTT
684 T-GCACG-CGTAGTGCCCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
** * * *** * *
16862678 CATTCCCAGTCTAAGATTGGACC-AAACTGAGGGTTGCAACAGCAGGATCGGTAG--CGCAGAGG
747 CATTCCCAGTCTAAGATCAGACCGGATC-GAGGGTTGTGGCAGCAGGATCGGCAGCACGTAGAGG
* * * *
16862740 GGGACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCAGCTGAACTCCCGCA
811 GGGACCCGGTCGATCCCCG-CTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCA
*
16862799 CGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
16862847 GGGCTCGAGC
Statistics
Matches: 3167, Mismatches: 351, Indels: 223
0.85 0.09 0.06
Matches are distributed among these distances:
868 43 0.01
869 118 0.04
870 29 0.01
871 9 0.00
872 25 0.01
873 371 0.12
874 1 0.00
875 1 0.00
876 1 0.00
877 201 0.06
878 4 0.00
879 1 0.00
880 17 0.01
881 3 0.00
884 1 0.00
886 2 0.00
887 2 0.00
888 3 0.00
889 2 0.00
891 1 0.00
894 2 0.00
895 166 0.05
896 7 0.00
897 104 0.03
898 3 0.00
899 449 0.14
900 29 0.01
901 25 0.01
902 76 0.02
903 278 0.09
904 168 0.05
905 66 0.02
906 101 0.03
907 9 0.00
908 4 0.00
909 1 0.00
910 12 0.00
911 25 0.01
912 33 0.01
913 20 0.01
914 17 0.01
916 3 0.00
917 15 0.00
918 6 0.00
919 4 0.00
920 28 0.01
921 672 0.21
922 4 0.00
925 1 0.00
926 3 0.00
927 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (868 bp):
CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCG
AGGGTTGCGGCAGCACATGCTGGGCTAGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCAC
CATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTCCGGCGATCGGGGGGCCGGG
GGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
GCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAA
AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
TACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGCACGCGTAGTGCCCGCCCACCCGCCCGCTC
GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGT
TGTGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGGTCGATCCCCGCTTGCGCATCCTGCCC
CTCTGGCCGGCTGAGCGCCCGCA
Found at i:16861041 original size:26 final size:26
Alignment explanation
Indices: 16861005--16861057 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16860995 GTTGACTTAG
16861005 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
16861031 GCATACAGAGTTCATTCCCTGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16861057 G
1 G
16861058 ATCGAATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16861962 original size:26 final size:26
Alignment explanation
Indices: 16861926--16861978 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16861916 GTTGACTTAG
*
16861926 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
16861952 GCATACGGAGTTCATTGCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16861978 G
1 G
16861979 ATTGGTCCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16864009 original size:26 final size:27
Alignment explanation
Indices: 16863974--16864030 Score: 98
Period size: 26 Copynumber: 2.1 Consensus size: 27
16863964 AATGGGTTGA
*
16863974 CTAAGGCATACGGAGTTTATTCCCAGT
1 CTAAGGCATACGGAGTTCATTCCCAGT
16864001 CTAA-GCATACGGAGTTCATTCCCAGT
1 CTAAGGCATACGGAGTTCATTCCCAGT
16864027 CTAA
1 CTAA
16864031 AATCAGACCG
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 25 0.86
27 4 0.14
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (27 bp):
CTAAGGCATACGGAGTTCATTCCCAGT
Found at i:16864061 original size:313 final size:313
Alignment explanation
Indices: 16863488--16864102 Score: 772
Period size: 313 Copynumber: 2.0 Consensus size: 313
16863478 CCGCCCGCTC
*
16863488 GTTTCGTCGGTTGGCTTAGGCATACGTAGTTCATTCCAAGACTAAGATCAGACCAGACCGAGGGT
1 GTTTCGTCGGTTGGCTTAGGCATACGTAGTTCATTCCAAGACTAAGATCAGACCAAACCGAGGGT
* * * * * *
16863553 TACGGCAGCAAGATCGACAGCACGCAGAGGGGGAACTAACTGATCCCCAGCTTACGCATCCCGCC
66 TACGACAGCAAGATCGACAGCACACAGAGGGGGAACCAACCGATCCCCAGCTTACACATCCCACC
* * * * * * * * *
16863618 CCTCTGGCTGGCTGAGCGCCCGCATGCTCGTTTCATGGGCTGACTTAGGCATGCGGAGTTCTTTC
131 CCACCGGCCGACTGAGCGCCCGCACGCTCATTTAATGGGCTGACTAAGGCATACGGAGTTCTTTC
** * *
16863683 CCAGTCTAAGCAAACGGAGTTCATTCCCAGTCTAAAATTGGACTGGACCGAGGGTTGCGACAGCA
196 CCAGTCTAAGCAAACGGAGTTCATTCCCAGTCTAAAATCAGACCGGACCGAGGGTTGCAACAGCA
* *
16863748 CATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGCCTCCCTGCTT
261 CATGCTGGGCTCGGGCATATGCTGGTGCCGCATTTTTCTTCGCCTCCCTGCTT
* * ** *
16863801 GTTTCGTCGGTTGGCTTAGGCATACAG-AGTTCATTCCCAGTCTAAGATTGGACCAAACTGAGGG
1 GTTTCGTCGGTTGGCTTAGGCATAC-GTAGTTCATTCCAAGACTAAGATCAGACCAAACCGAGGG
* * * ** * *
16863865 TTACGACAGC-AGCATC-AGCCGCACATAGAGGGGGACCCGGCCGA-CCCTCAGCTTGCACATCT
65 TTACGACAGCAAG-ATCGA-CAGCACACAGAGGGGGAACCAACCGATCCC-CAGCTTACACATCC
* * * *
16863927 CACCCCACCGGCCGATTGAGCGCCCGTACGCTTATTTAATGGGTTGACTAAGGCATACGGAGTT-
127 CACCCCACCGGCCGACTGAGCGCCCGCACGCTCATTTAATGGGCTGACTAAGGCATACGGAGTTC
* *
16863991 TATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAAATCAGACCGGATCGAGGGTTGCAA
192 T-TTCCCAGTCTAAGCAAACGGAGTTCATTCCCAGTCTAAAATCAGACCGGACCGAGGGTTGCAA
* *
16864056 CAGCACATGTTGGGCTCGGGCATATGCTGGTGCCGTATTTTTCTTCG
256 CAGCACATGCTGGGCTCGGGCATATGCTGGTGCCGCATTTTTCTTCG
16864103 TCGGGGCACC
Statistics
Matches: 255, Mismatches: 42, Indels: 10
0.83 0.14 0.03
Matches are distributed among these distances:
312 7 0.03
313 247 0.97
314 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.24
Consensus pattern (313 bp):
GTTTCGTCGGTTGGCTTAGGCATACGTAGTTCATTCCAAGACTAAGATCAGACCAAACCGAGGGT
TACGACAGCAAGATCGACAGCACACAGAGGGGGAACCAACCGATCCCCAGCTTACACATCCCACC
CCACCGGCCGACTGAGCGCCCGCACGCTCATTTAATGGGCTGACTAAGGCATACGGAGTTCTTTC
CCAGTCTAAGCAAACGGAGTTCATTCCCAGTCTAAAATCAGACCGGACCGAGGGTTGCAACAGCA
CATGCTGGGCTCGGGCATATGCTGGTGCCGCATTTTTCTTCGCCTCCCTGCTT
Found at i:16865692 original size:890 final size:894
Alignment explanation
Indices: 16863802--16865893 Score: 2592
Period size: 890 Copynumber: 2.3 Consensus size: 894
16863792 TCCCTGCTTG
* * * * *
16863802 TTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTC-TAAGATTGGACCAAACTGAGGGT
1 TTTCGTCGGTTGGCTTAGGCATACAAAGTTCATTCCCAG-CATAAGATCGCACCAGACCGAGGGT
* * ** * ** * * * *
16863866 TAC-GACAGC-AGCATC-AGCCGCACATAGAGGGGGACCCGGCCGA-CCCTCAGCTTGCACATCT
65 TACAG-CAGCAAG-AACGA-CAGCACGCAGAGAGGGACCCGATCGATCCC-CGGCTTACGCATCC
* * * * * * ** ** * *
16863927 CACCCCACCGGCCGATTGAGCGCCCGTACGCTTATTTAATGGGTTGACTAAGGCATACGGAGTTT
126 CA-CCCTCTGGCAGGTTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * * * *
16863992 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAAATCAGACCGGA-TCGAGGGTTGCAA
190 ATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACT-GAGGGTTGCGA
* * *
16864056 CAGCACATGTTGGGCTCGGGCATA-TGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCTCGG
254 CAGCACATGCTGGGCTCGGGCA-AGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCA-CTC-G
*
16864120 AGCATCACCGGAGAACCTGACGGACGGCATTGGGGTTCCGACGATCGGGGGGCCAGGGGGTGTGC
316 AGCAT---CGGAGAACCTGACGGACGGCACTGGGGTTCCGACGATCGGGGGGCCAGGGGGTGTGC
*
16864185 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
378 GCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * *
16864250 TCGAGAACTCACACCCCATTAAAGACCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAA
443 TCGAGAACTCACACCCCATTAAAGACCATTTCAGATTTTACAAGTTTACTACCAGTAGCCATTAA
* * * *
16864315 AGTGTCTGAAATAGGGATACTTTTTTCGAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGC
508 AGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTAGTACACTGTGAGTTTTTAGC
* * **
16864380 TGAATTTTTTTGCGCATGCCAACAAAAATACAAGGATCCCATCTACCAAGTTTTTGGCCAAAACT
573 TGAATTTTTTTGCGCATGCCAAAAAAAATACAAGGATCCCATCAACCAAGTTTGGGGCCAAAACT
** *
16864445 CCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATTATGAAAAATAGAAA
638 CCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATGATGAAAAATAGAAA
* * *
16864510 ACTAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCC
703 ACGAGTCGTCTTGCCATGAAACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
*
16864575 ATAAAAATGGCATTGCACACAGAATTATGAAGATGTGACTAAACCCACCTACCACCCTATCGATC
768 ATAAAAATGGCATTGCACACAGAAATATGAAGATGTGACTAAACCCACCTACCACCCTATCGATC
* * * * *
16864640 CACGGCTCGCGCATCCCGTCTCTCTCTCCGACGTAGTGCCCTCCCGCTCGCCCGCCTGCTCA
833 CACGGCTCGCGCATCCCGTCTCTCTCGCCGACGTAATGCCCGCCCGCTCGCCCACCCGCTCA
* * * * *
16864702 TTTCGTTGGTTGGCTTCGTCATACAAAGTTCATTCCCAGCATAAGATTGCACCAGACCGTGGGTT
1 TTTCGTCGGTTGGCTTAGGCATACAAAGTTCATTCCCAGCATAAGATCGCACCAGACCGAGGGTT
* * * * * * *
16864767 ACAGTAGCAGGATCGGCAGCATGCAGAGTGGGACCCGATCGATCCCCGGCTTACGCATCCCGCCC
66 ACAGCAGCAAGAACGACAGCACGCAGAGAGGGACCCGATCGATCCCCGGCTTACGCATCCC-ACC
* * * * * * * **
16864832 CTGTGGCCGGTTGAGCGTCGGCACGCTCGTTTTGTGGGTTGACTTAGGCACACTAAGTTCATTCC
130 CTCTGGCAGGTTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* *
16864897 CAGTCTAAGCATGTAGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGACAGCAC
195 CAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGACAGCAC
*
16864962 ATGCTGGGCTCGGGCAAGTGCTGGTGCCACATTTTTCTTCGTCAGGGCACCA-TC-A-C-T-GGA
260 ATGCTGGGCTCGGGCAAGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCACTCGAGCATCGGA
*
16865022 GAACCTGACCGG-CGGCACTGGGGTTCCGACGATCGGGGGTGCCGGGGGGTGTGCGCACATGATG
325 GAACCTGA-CGGACGGCACTGGGGTTCCGACGATCGGGGG-GCCAGGGGGTGTGCGCACATGATG
* *
16865086 TGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTTGAGAACTC
388 TGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
16865151 ACACCCC-TTAAAGAGCATTTCAGATTTTACAAGTTTACTGCCAGTAGCCATTAAAGTGTCTGAA
453 ACACCCCATTAAAGACCATTTCAGATTTTACAAGTTTACTACCAGTAGCCATTAAAGTGTCTGAA
*
16865215 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTAGTACACTGTGAGTTTTTAGCTGAATTTTTT
518 ATAGGGACACTTTTTTCAAATGGTCACAAAATCTAGTACACTGTGAGTTTTTAGCTGAATTTTTT
* * ** * *
16865280 TGTGCATGCCAAAAAAAATACAAGGATCACGA-CAACCTTGTTTGGGGCCAAAGCTCCTT-TGAA
583 TGCGCATGCCAAAAAAAATACAAGGATC-CCATCAACCAAGTTTGGGGCCAAAACTCCTTCCG-A
*
16865343 AAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGA-GGAAAATAGAAAACGAGTC
646 AAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAAT-GATGAAAAATAGAAAACGAGTC
* * *
16865407 GTCTTGCCATGAAACTTCACGTCAAGGCTTAAGGGTCTATTGTATGAATTTAGAAGCCATAAAAA
710 GTCTTGCCATGAAACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * *
16865472 TGGCATTG-ACATGTAGAAATATGATGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
775 TGGCATTGCACA--CAGAAATATGAAGATGTGACTAAACCCACCTACCACCCTATCGATCCACGG
* * * * * * *
16865536 CTTGTGCATCCCGTCTCTCTGGCCGACGTAATGCCCGCCC-TTC-CATCTACCCGTTCG
838 CTCGCGCATCCCGTCTCTCTCGCCGACGTAATGCCCGCCCGCTCGC--CCACCCGCTCA
* ** * ** * *
16865593 TTTGGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTTTAAGATC-CGA-CGGATCGAGGGT
1 TTTCGTCGGTTGGCTTAGGCATACAAAGTTCATTCCCAGCATAAGATCGC-ACCAGACCGAGGGT
*** * * *
16865656 TGTGGCAGCAAGAACGACAGGACGCAG-GAAGGGACCCGGTCGATCCCCGGCTTACGTATCCCAC
65 TACAGCAGCAAGAACGACAGCACGCAGAG-AGGGACCCGATCGATCCCCGGCTTACGCATCCCAC
* * * *
16865720 CCTCTGGCATGTTGAGTGCCCGCACACTCGTTTCGTGGGTTGACTTAGGAATACGGAGTTCATTA
129 CCTCTGGCAGGTTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
* * * *
16865785 CCAGTCTAAGCATATGGAATTCATTCCCAGTCTAAGATCGAATCAGACCGAGGGTTGCGACAGCA
194 CCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGACAGCA
*
16865850 CATGCTGGGCTCGGGCAAGTGCTGGTGTCGCATTTTTCTTCGTC
259 CATGCTGGGCTCGGGCAAGTGCTGGTGCCGCATTTTTCTTCGTC
16865894 GAATCGTAAA
Statistics
Matches: 1025, Mismatches: 148, Indels: 49
0.84 0.12 0.04
Matches are distributed among these distances:
889 160 0.16
890 382 0.37
891 224 0.22
894 1 0.00
895 1 0.00
896 1 0.00
898 2 0.00
899 2 0.00
900 246 0.24
901 6 0.01
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (894 bp):
TTTCGTCGGTTGGCTTAGGCATACAAAGTTCATTCCCAGCATAAGATCGCACCAGACCGAGGGTT
ACAGCAGCAAGAACGACAGCACGCAGAGAGGGACCCGATCGATCCCCGGCTTACGCATCCCACCC
TCTGGCAGGTTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
AGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGACAGCACA
TGCTGGGCTCGGGCAAGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCACTCGAGCATCGGAG
AACCTGACGGACGGCACTGGGGTTCCGACGATCGGGGGGCCAGGGGGTGTGCGCACATGATGTGC
AATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCATTAAAGACCATTTCAGATTTTACAAGTTTACTACCAGTAGCCATTAAAGTGTCTGAAATA
GGGACACTTTTTTCAAATGGTCACAAAATCTAGTACACTGTGAGTTTTTAGCTGAATTTTTTTGC
GCATGCCAAAAAAAATACAAGGATCCCATCAACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATGATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGCACACAGAAATATGAAGATGTGACTAAACCCACCTACCACCCTATCGATCCACGGCTCGCGCA
TCCCGTCTCTCTCGCCGACGTAATGCCCGCCCGCTCGCCCACCCGCTCA
Found at i:16868014 original size:11 final size:11
Alignment explanation
Indices: 16867994--16868037 Score: 61
Period size: 11 Copynumber: 4.0 Consensus size: 11
16867984 GCCAGGGCAC
*
16867994 CATCGTCGGAG
1 CATCGCCGGAG
16868005 CATCGCCGGAG
1 CATCGCCGGAG
*
16868016 CATCACCGGAG
1 CATCGCCGGAG
*
16868027 CATCGTCGGAG
1 CATCGCCGGAG
16868038 AACCTGACCG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 29 1.00
ACGTcount: A:0.20, C:0.32, G:0.34, T:0.14
Consensus pattern (11 bp):
CATCGCCGGAG
Found at i:16868860 original size:898 final size:882
Alignment explanation
Indices: 16867019--16870407 Score: 4454
Period size: 898 Copynumber: 3.9 Consensus size: 882
16867009 TAAGCATATC
* * * * * * * * *
16867019 GAGTTCATTCCCAGTGTAAGATCGAACCGGACCAAGGGTTAC-GACAGCATAAGCTGGGTTCGGG
1 GAGTTCATTCCTAGTCTAAGATCGGATCGGACCGAGGGTTGCTG-CAGCACATGCTGGGCTCGGG
* * *
16867083 CATGTGCTGGTGCTGAATTTTTCTTT-GTCGAGGCACCA---TC---GC--CGGAGCATCATCG-
65 CATGTGCTGGTGCTGCATTTTT-TTTCGTCGGGGCACCATCGTCGGAGCATCGGAGCATCACCGA
** * * * *
16867138 GAGAACCTGACCGGCGACATTGGGGTTTCGGCGATCG-GGGGGGCTGGGGGGTGTGCGCACATGA
129 GAGAACCTGACCGATGGCATTGGGGTTCCGGCGATCGAGCGGGGCCGGGGGGTGTGCGCACATGA
* * * * * *
16867202 TGTGTGATGGTTGTTGCTACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACATCAAGAAC
194 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAAC
***
16867267 TCACACTTGCTTAAAGAGCATTTGAGATTTT-CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
259 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
16867331 AAATGGGGACACTTTTTTCAAATGGA-CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATAT
324 AAATGGGGACACTTTTTTCAAAT-GATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATAT
* ** * *
16867395 TTTTGTACATGCCAATC-AAAATACAAGGATCATTTCTACCAAGTTTGGGGCCGAAACTCCTTCT
388 TTTTGTGCATGCCAA-CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * *
16867459 GAAAAAATTTTCAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCGTAAAAAATAGAAAACGAGT
452 GAAAAAATTTT-AAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATAAAAAATAGAAAACGAGT
* *
16867524 CGTCTGGCCATGAAACTTCACGTGATGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
516 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
16867589 ATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA-CGATCCACGG
581 ATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
** * * * * * * *
16867653 CTTGTGCATCCCGTCTCTCTTGCCGGCGTAGTGCTCGGCCGCCTGGCCGCCCTCTCATTTTATCG
646 CTTACGCATCCCGTCTCTC-TGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTTGTCG
* * ** *
16867718 GTTGGCTTAGGCAAACGGAGTGCATTCCCAGTCTAAGATCGGTCCGGATCGAGGGTTATAGCAGT
710 GTTGGCTTAGGCATACGGAGTGCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGGCAGC
* * *
16867783 AGGATCGGTAACATGCAGAGGGGGACCC-GACCGATCCCCGGCTTGCACATCCCGCCCCTCTGGC
775 AGGATCAGTAGCATG-AGAGGGGGACCCGGA-CGATCCCCGGCTTGCGCAT-CCGCCCCTCTGGC
*
16867847 CAGTT-AAGCGCCTGTACGCTCGTTTCGTGGGTTGACTTAGGCATACG
837 CGGTTGAAGC-CC-GTACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* *
16867894 GAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTG-TGGCAGCACATGCTGGGCTCGGG
1 GAGTTCATTCCTAGTCTAAGATCGGATCGGACCGAGGGTTGCT-GCAGCACATGCTGGGCTCGGG
* * * *
16867958 CATGTGCTGGTGCTGTATTTTTCTTCGCCAGGGCACCATCGTCGGAGCATCGCCGGAGCATCACC
65 CATGTGCTGGTGCTGCATTTTTTTTCGTCGGGGCACCATCGTCGGAGCAT---CGGAGCATCACC
**
16868023 GGAGCATCGTCGGAGAACCTGACCGATGGCATTGGGGTTCCGATGATCGAG-GGGGCCGAGGGGG
127 ---G-A------GAGAACCTGACCGATGGCATTGGGGTTCCGGCGATCGAGCGGGGCCG-GGGGG
* *
16868087 TGTGCGCACATGATGTGCAATGTGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
181 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
** * * *
16868152 AAACCTCGTGAACTCCCACCCCCTTAAAGAGTATTTGCGATTTTACAGGTTTGCTGCCAGTAGCC
246 AAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* *
16868217 ATTAACGTGTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTTGAGTTT
311 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTT
*
16868282 TTAGCTGAATATTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCA
376 TTAGCTGAATATTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
*
16868347 AAA-TCCTTCCGAAAAAATTTCT-AAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTAAAAAAT
441 AAACTCCTTCCGAAAAAATTT-TAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATAAAAAAT
* * * *
16868410 AGAAAACGAGTCATCTAGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATTAATTTAC
505 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
*
16868475 AAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCATAAACCCACCTACCACCCTA
570 AAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * *
16868540 TCGATCCACGGCTTACGCATCCCGTCTCTCTAGCAGGCATAGTGCCCGCCCGCCCGTCCGCCCGC
635 TCGATCCACGGCTTACGCATCCCGTCTCTCT-GCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGC
*
16868605 TCGTTTTGTCGGTTGGCTTAGGCATACGGAGTGCATTCCCAGTCTAAGATCGGACTGGATCGAGG
699 TCGTTTTGTCGGTTGGCTTAGGCATACGGAGTGCATTCCCAGTCTAAGATCGGACCGGATCGAGG
* * *
16868670 GTTGCGGCAGCAGGATCAGTAGCATGTAGAGGGGGACCCGGTCGATTCCCGGCTTGCGCATCTCG
764 GTTACGGCAGCAGGATCAGTAGCATG-AGAGGGGGACCCGGACGATCCCCGGCTTGCGCATC-CG
* * *
16868735 CCTCTCTGGCCGGTTGAATGCCCGTACGCTCGTTTCGTGGGTTGACTTCGGCATACA
827 CCCCTCTGGCCGGTTGAA-GCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* **
16868792 GAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCTGCAGCACATGCTGCGG-TTAGG
1 GAGTTCATTCCTAGTCTAAGATCGGATCGGACCGAGGGTTGCTGCAGCACATGCTG-GGCTCGGG
* *
16868856 CATGTGCTGGTGCCGCATTTTTTTTCATCGGGGCACCA---TC---G--TCGGAGCATCACCGA-
65 CATGTGCTGGTGCTGCATTTTTTTTCGTCGGGGCACCATCGTCGGAGCATCGGAGCATCACCGAG
*
16868912 AGAACCTGACCGATGGCATTGGGGTTCCGGCGATCG-GCGAGGCCGGGGGGTGTGCGCACATGAT
130 AGAACCTGACCGATGGCATTGGGGTTCCGGCGATCGAGCGGGGCCGGGGGGTGTGCGCACATGAT
*
16868976 GTGCGATGGGTGCTGGTACTTGGCTCTTATATTGG-CCCCTATCCCTCATCAAACCTCAAGAACT
195 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
* * * * *
16869040 CACACCCCCTTAAATAGCATATAAGATTTCACAGGTTTGCTGCCAGTAGCCATTAAAGTGCCTGA
260 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * * *
16869105 AATGGGGACACGTTTTTCAAATGATCAGAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTT
325 AATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTT
* ** *
16869170 TTGTGCATGCCAACAAAAATGCGTGGATCACGTATACCAAGTTTGGGGCCAAAACTCCTTCCGAA
390 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
** * * *
16869235 AAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGT
455 AAAATTTT-AAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATAAAAAATAGAAAACGAGTCGT
*
16869300 CTTGCAATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
519 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** * * *
16869365 GCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTATCACCCCATCGATCCACGGCTT
584 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
*
16869430 ACGCATCCCGTCTCTCT---GGC-T-G-G--CG---G---GCCCGCCTGCTCGTTTTGTCGGTTG
649 ACGCATCCCGTCTCTCTGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTTGTCGGTTG
* * * * *
16869481 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT---GC-G-A-TA
714 GCTTAGGCATACGGAGTGCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGGCAGCAGGA
* * * * *
16869540 GCA--AGC---AGAGGGGGACCC-GACGGATCCCCGACTTGTGCATGCCACCCCTCTGGCCGGCT
779 TCAGTAGCATGAGAGGGGGACCCGGAC-GATCCCCGGCTTGCGCAT-CCGCCCCTCTGGCCGGTT
* ** *
16869599 GAGCGCCCACACGCTCGTTTTGTGGGTTGACTTAGGCATACG
842 GA-AGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * *
16869641 GAGTTCATTCCTAGTCTAAGATCGGATCGGACCGATGGTTGCGGTAGCACATGCTGGGCTCGGGC
1 GAGTTCATTCCTAGTCTAAGATCGGATCGGACCGAGGGTTGCTGCAGCACATGCTGGGCTCGGGC
* *
16869706 ATGTGCTGGTGCTGCATTTTTTTTCGTTGGGGCATCATCGTCGGAGCATC--A-C-T-----AGA
66 ATGTGCTGGTGCTGCATTTTTTTTCGTCGGGGCACCATCGTCGGAGCATCGGAGCATCACCGAGA
*
16869762 GAACCTGACCGATGGCATTGGGGTTCCGGCGATC-AGCGGGGCCAGGGGGTGTGCGCACATGATG
131 GAACCTGACCGATGGCATTGGGGTTCCGGCGATCGAGCGGGGCCGGGGGGTGTGCGCACATGATG
* * * * *
16869826 TGTGATGGGTGCTGGTACTTCGCTCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTC
196 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
*
16869891 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAA
261 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * *
16869956 ATGGGGACACTTTGTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAGTTTTTT
326 ATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTT
16870021 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
391 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * *
16870086 AAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATAAAAAATAGAAAATGAGTCGTC
456 AAATTTT-AAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATAAAAAATAGAAAACGAGTCGTC
*
16870151 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCCTTGTATGAATTTACAAGCCATAAAAATGG
520 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** *
16870216 CATTGGCATGCAGAAATATGAAGAT-TAGCCTAAACCCACCTACCACCCTATCGATCCACGGCTC
585 CATTGGCACACAGAAATATGAAGATGT-GCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
16870280 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCCCGCTCGCTCGTTTTGTCGGTT
649 ACGCATCCCGTCTCTCT-GCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTTGTCGGTT
* *
16870345 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTATGGCAGCA
713 GGCTTAGGCATACGGAGTGCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGGCAGCA
16870408 CATGCTGGGC
Statistics
Matches: 2227, Mismatches: 208, Indels: 163
0.86 0.08 0.06
Matches are distributed among these distances:
848 5 0.00
849 260 0.12
850 404 0.18
852 2 0.00
853 4 0.00
854 3 0.00
855 6 0.00
856 2 0.00
857 4 0.00
858 2 0.00
859 2 0.00
861 71 0.03
862 1 0.00
864 1 0.00
865 73 0.03
867 2 0.00
868 2 0.00
869 2 0.00
870 2 0.00
871 1 0.00
872 3 0.00
874 195 0.09
875 151 0.07
876 226 0.10
878 2 0.00
881 2 0.00
883 1 0.00
884 1 0.00
886 11 0.00
887 12 0.01
889 1 0.00
890 1 0.00
892 1 0.00
895 2 0.00
897 202 0.09
898 413 0.19
899 152 0.07
900 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (882 bp):
GAGTTCATTCCTAGTCTAAGATCGGATCGGACCGAGGGTTGCTGCAGCACATGCTGGGCTCGGGC
ATGTGCTGGTGCTGCATTTTTTTTCGTCGGGGCACCATCGTCGGAGCATCGGAGCATCACCGAGA
GAACCTGACCGATGGCATTGGGGTTCCGGCGATCGAGCGGGGCCGGGGGGTGTGCGCACATGATG
TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
ATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTT
TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
AAATTTTAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATAAAAAATAGAAAACGAGTCGTCT
TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTAC
GCATCCCGTCTCTCTGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTTGTCGGTTGGC
TTAGGCATACGGAGTGCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGGCAGCAGGATC
AGTAGCATGAGAGGGGGACCCGGACGATCCCCGGCTTGCGCATCCGCCCCTCTGGCCGGTTGAAG
CCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACG
Found at i:16871256 original size:26 final size:26
Alignment explanation
Indices: 16871226--16871278 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16871216 GTTGACTTAG
16871226 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16871252 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16871278 G
1 G
16871279 ATCAGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16872093 original size:902 final size:903
Alignment explanation
Indices: 16870352--16878728 Score: 10729
Period size: 902 Copynumber: 9.4 Consensus size: 903
16870342 GTTGGCTTAG
* * * *
16870352 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTATGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGTAGCACATGCTGGG
* * *** * * *
16870417 CTCAGGCATGTGCTGGTGTCGCATTTTTCTTTGTCGGGGCACCATCGTCGGAGCATAGCAGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * *
16870482 ACCTGACCGGA-GGCATTAGGGTTCCAGCGATC-GGGGGG-TGGGGGGTGTGCACACATGATGTG
131 ACCTGACC-GACGGCATTGGGGTTCCGGCGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
16870544 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGGACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
16870609 ACCCCCTTAAGGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTGTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * * * *
16870674 GGGGACACTTTTTTCAAGTGGTCACAAAACCTTGTACAGTTCGACTTTTTAGCCGAATGTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
16870739 TCCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
16870804 ATTTTAAAAAATCACGAACAGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
455 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
16870869 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT-GCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
16870933 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
585 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * **
16870998 CATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCTACCCGCCCGTCCACTCGTTTCGTTGGTTTAC
650 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCGTCCGCTCGTTTCGTCGGTTGGC
* * * * *
16871063 TTTGGCATACGGAGTTTATTCCCTGTCTAAGATCAGACTAGATCGAGGGTTGCAGCAGCAGGATC
715 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCAGGATC
* * * * * * *
16871128 GGTAGCATGCAGAGGAGGAATGGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGA
780 GGCAGCACGCAGAGGGGGACTCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * *
16871193 GCGCCAGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
845 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
16871252 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACGGAAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGTAGCACATGCTGGG
* * *** **
16871317 CTCGGGCATGTGGTGGTGCCGTATTTTTCTTCGTTGGGGCACCATCGCCGGAGCATCGTTGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * * *
16871382 ACCTGACCGGCGTCATTAGGGTTCTGGCGATCAGGGGGGCCGGGGGGTGTGCGCACGTGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCGGCGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
16871447 AATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGGACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * *
16871512 CCCCCTTAAAGGGCATTTGGGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTGTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * *
16871577 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTTGACTTTTTAGCTGAATATTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
16871642 CCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* *
16871707 TTTTAAAAAATCACGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
456 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
16871772 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT-GCAT
521 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
16871836 TGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGC
586 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * *
16871901 ATCCTGTCTCTCTAGCCGACGTAGTGCCTGCCTACCCGCCCGTCCACTCGTTTCGTCGGTTGGCT
651 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCGTCCGCTCGTTTCGTCGGTTGGCT
* * * *
16871966 TAGGGATACGGAGTTTATTCCCAGTCTAAGATCCGACCAGATCGAGGGTTGCAGCAGCAGGATCG
716 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCAGGATCG
* * * * * * *
16872031 GTAGCATGCAGAGGAGGAATGGGTCGATCCCCGCCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
781 GCAGCACGCAGAGGGGGACTCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* *
16872096 CGCCAGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
846 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
16872154 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGTAGCACATGCTGGG
* * * ** * **
16872219 CTCGGCCATGTGTTGGTGCCGTATTTTTCTTTGCCGGGGCACCATCGCCAGAGCATCATCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * * *
16872284 ACCTGACCGGCGTCATTAGGGTTCTGGCGATCAGGGGGGCC-GGGGGTGTGCGCACGTGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCGGCGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
16872348 GATGGGTGCTGCTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * * * *
16872413 CCCCCTTAAATAGCATTTTAGATTTTATAGGTTTGCTACCAATAGCCATTAAAGTGTCTAAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
16872478 GGGACACTTTTTTCAAATGGTAACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * * * *
16872543 GCAAGCCAACAAAAATACAAGGATCATGTCTACTAGGTTTGTGGCCAAAACTCCTTTCAAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
*
16872608 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
456 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
16872673 CCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTTCAAGCCATAAAAATGGCAT
521 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * **
16872738 TGGCACGCAGAAATACGAAGATGTGCAAAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
586 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * * *
16872803 ATCCCGTCTCTCTGGCGGGCGTAGTGCCCACCCGCCCGCCCCGCCCGTTCGTTTTGTCGGTTGGC
651 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCG-CCCGTCCGCTCGTTTCGTCGGTTGGC
* * * * * *
16872868 TTAGGAATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GAACTGAGGGTCGTGGTAGTAGGAT
715 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATC-GAGGGTTGCGGCAGCAGGAT
* * * *
16872932 CAGCAGCACGCAGAGGGGGAC-CTGATCGATCCCCGGCTTGCGTATCCCACCCCTCTGTCCGGCT
779 CGGCAGCACGCAGAGGGGGACTC-GATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
** * *
16872996 GAGCGCCTACATGCTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
843 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** ** *
16873057 GCATACGGAGCTCATT-CCTGATCTAAGATCAGATAAGACCGAGGGTTGTGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAG-TCTAAGATCGGACCAGACCGAGGGTTACGGTAGCACATGCTGG
* * * * * *
16873121 GCAT-GGGCATGTGCTGGTG-CGTATTTTTCTTCACCGAGGCACCATCGCAGAAGCATCACCGAA
65 GC-TCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGA
* * ** * *
16873184 GAACCTGACCGACGGCGTTGGGGTTTCGTTGATCAAGGGGGCCGGGGGGGTGTGCGCACATGGT-
129 GAACCTGACCGACGGCATTGGGGTTCCGGCGATCAGGGGGGCC-GGGGGGTGTGCGCACATGATG
** **
16873248 TAATGATGGGTGCTGGTACTTGGCCCTTATATTGGCCAGCTATCCCTCATCAAACCTCGAGAACT
193 T-GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* ** * * *
16873313 CACACTCCCTTAAAGAGCATTCAAGATTTTACAGGTTTGGTGCCAGTAGCAATTAAAGTGTTTGA
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
16873378 AATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAG-TTGTAGCTGAATTTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* *
16873442 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCGAAACTCCATCCGAA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* ** * * * *
16873507 AAAATTTTAAAAAATCCTGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAAAAAATGGGTCGT
452 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
**
16873572 CTCACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
16873637 GCATTGGCATGCAGAAATATGAAGATATGCCT------ACC-ACCA---TATCGAGCAACGGTTT
582 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * ** *
16873692 GCGTATCCCATCTCTCTTGTCGGTGTAGTGCCTG----CCCG--C--CCGCTCGTTTCGTCGGTT
647 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCGTCCGCTCGTTTCGTCGGTT
* * * * *
16873749 GGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCAGCAGCAGG
712 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCAGG
** * * * * ** * * * *
16873814 ATCGATAACACGCAGAGGGGGACCCAACCGATCCCCGATTTGTGCATCCCGCCCCTTTGGCTGGT
777 ATCGGCAGCACGCAGAGGGGGACTCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * *
16873879 TAAGCCCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAA
842 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
16873941 GCATACGAAGTTCATTCCCAGTCTAAGATCGAACTAGATCGAGGGTTACGGTAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGTAGCACATGCTGGG
* * ** * * * *
16874006 CTCGAGCCTGTGCTTATGCCGTATTTTTCTTCA-----TCA--A--G--GCACCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * * *
16874060 ACCTGACCGACGGTATTGGGATTCCGGAGATCAGGGGGGCCGAGGGGGTGTGCGAATATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGGCGATCAGGGGGGCCG-GGGGGTGTGCGCACATGATGTG
* * ** *
16874125 CGATGGGTTCTGGTACTTGGCCTTTATATTGAACCCCTATCCCTCATCAAACCTTGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
16874190 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
16874255 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGATTTTAGCTGAA-TTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
16874319 AGCACGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
16874384 ATTTTGAAAAACCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTT
455 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
16874449 GCCATGAAACTTCACGTGAAGGCTTAAGGG-CCATTGTATGAATTTACTAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
16874513 TTGGCATGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
585 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
16874578 CATCCCGTCTCTCTGGCTGGA-GTAGTGCCCG----CCCGCCCGCCCGCTCGTTTCGTCGGTTGG
650 CATCCCGTCTCTCTGGC-CGACGTAGTGCCCGCCCACCCGCCCGTCCGCTCGTTTCGTCGGTTGG
* ** * * * *
16874638 CTTAGGCGTACGGAGTTCATTCCCAGTCTAAGATTGGACCGGATCAAGGCTTCCGGCAGCAGGAT
714 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCAGGAT
* ** * * *
16874703 CGACAGCATACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTG
779 CGGCAGCACGCAGAGGGGGACTCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
*
16874768 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
844 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * **
16874828 GCATATGGAGTTCATTCCCAGTCAAAGATCGGACCAGACCGAGGGTTGCAGCAGCACACGAAGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGTAGCACATGCTGGG
* * * * *
16874893 CTCGGGCATGTGCTGGTGCCGCATGTTTCTTCGCCGGGGCACCATCGCCGGAGTATCGTCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* *
16874958 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGG-GTGCGCACATGATGTGA
131 ACCTGACCGACGGCATTGGGGTTCCGGCGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTG-
* * * *
16875021 C-TTGGGTACTGGTACATGGCCCTTATATTGGCCCCCTATCCCTCATGAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * * *
16875085 ACCCCCTGAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCGATTAAAATGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
16875150 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAAATTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* ** * * *
16875215 TGCATGCCAAAAAAAATACAAGGATCGTGTCTACTAAGTTTGGGGCCAAAACTCCTTCTGGAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
*
16875280 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATAAAAAATAGAAAACGAGTCGTCTT
455 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
16875345 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** * * ** *
16875410 TTGGCACACAGAAAGATGAAGATGTGCCTAAACCCAGCTACCACCCTATTAATCCACGGCTTACG
585 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * * *
16875475 TATCCTGTCTCTCTGGCCGACGTAGTGCCCGCCCGCACG--C-T-CGTTCGTTTCATCGGTTGAC
650 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCGTCCGCTCGTTTCGTCGGTTGGC
* ** * *
16875536 TTAGGCATACAGAGTTCATTCCCAGTCTAAGATC-GAACTGGA-CTGAGGGTTGTGGTAGCAGGA
715 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGATC-GAGGGTTGCGGCAGCAGGA
** * * * *
16875599 TCGAAAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTACCCATCCCGCCCCTCTGGGCGGCT
778 TCGGCAGCACGCAGAGGGGGACTCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * * *
16875664 AAGCGGCCGTACGCTCGTTTCATGGGTTGACATAGGCATACGGAGTTCATTCCCAGTCTAA
843 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
16875725 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGTAGCACATGCTGGG
** * * *
16875790 CTCGGGCATGTGCTGGTGCCATATTTTTCTTCACCGGGGCACCATCGCCGTAGCATCACCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * *
16875855 ACCTGACCGACGGCTTTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGGTGTGCGCACATGATGT
131 ACCTGACCGACGGCATTGGGGTTCCGGCGATCAGGGGGGCC--GGGGGGTGTGCGCACATGATGT
* * *
16875920 ACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTTGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
16875985 CACCCCCTTAAAGAGCATTTGAGATTTTAGAGGTTTGCTGCGAGTAGCCATTAAAGTGTTTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
** * * *
16876050 TGGGGATGCTTTTTTCTAATGGTCACAAAATCTTGTACACTTCTAGTTTTTAGCTGAATTTGTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * * *
16876115 GTGAATGCCAACAAAAATACCATGATCATGGCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * *
16876180 AATTGTAAAAAATCCCAAACCCCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
454 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
16876245 TGCCATGAAACTTCACGTGAAGTCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGG
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
16876310 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAGCACCCTATCGATCCACGGCTTGC
584 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * * * *
16876375 GCATCCCGTCTTTTTGGCCGTCGTAGTGCCCGCCCGCCTGCCTG-CTCGCTCATTTAGTCGGTTG
649 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCGTC-CGCTCGTTTCGTCGGTTG
* ** * * * *
16876439 GCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGGACTAGATCGAGTGTTGCAGCAGCAAGA
713 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCAGGA
* ** *** * ** * * *
16876504 GCGGCAGCACATAGAGCATGACCCGGCCGATCCCAGGCTTGCGCATCCAGCCCCTTTGGCCGGCT
778 TCGGCAGCACGCAGAGGGGGACTCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * *
16876569 GAGCGCCCGTACGGTCGTTTCGTGGG--G-----GGCATACGGAGTTCATTGCCAGTCTAA
843 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * ** *
16876623 GCATATGGAGTTCATTCCCAGTCTAAGATGGGACCGGACCGAAGGTTGCGACAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGTAGCACATGCTGGG
* * * *
16876688 CTCGGGCATGTGCTGGTGCCGCATTGTTCTT-ACCGAGGCACCATCGCCAGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * *
16876752 ACCTGACCGACGGCATTGGGGTTCTGGTGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCGGCGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * **
16876817 GATGGGTGCTGGTACTTTGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGGAGAAAACACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * *
16876882 CCCCCTTAAAAAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAAATA
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* **
16876947 GGGACATTTTTTTCAAATGGTCACAAAATCTTCAACACTTCGAGTTTTTAGCTGAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
16877012 GCATGCCAAAAAAAATACAAGGATCACGTTTACCAAGTTTGGGGCCAAAACACCTTCCAAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* ** *
16877077 TTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCGTCTTG
456 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
16877142 CCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTAGAAGCCA-AAAAATTGGCA
521 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA-TGGCA
*
16877206 TTGGCATGGAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
585 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
** * * * ** * ** *
16877271 CATCCCGTCTCT-TCGATCGGCATAGTGCCCGCCTACCCTTCCGTCCACTTATTTCATCGGTTGG
650 CATCCCGTCTCTCT-GGCCGACGTAGTGCCCGCCCACCCGCCCGTCCGCTCGTTTCGTCGGTTGG
* * ** * * ** * *
16877335 CTTAGGCAGACGAAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTATGGTAGTAGGAT
714 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCAGGAT
* * * * *
16877400 CGGCAGCACACAAAGGGGGACTCGATCGATCCCCTGCTTGCACATCCCGCCCCTCTGGTCGGCTG
779 CGGCAGCACGCAGAGGGGGACTCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * * * * *
16877465 AGCACCCGCACGTTCGTTCCATGGTTTGACTTAAGCATACGGAGTTTATTCCCAGTCTAA
844 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
16877525 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTGCGATAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGTAGCACATGCTGGG
* * * * *
16877590 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGTGGCACCATCACCGGAGCAACGCTGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * * * *
16877655 ACCTGACCGACGGCATTGGGGTTCTGGTGATCAGGGGGGCCGAGGGGGGGTGCACACATGATCTA
131 ACCTGACCGACGGCATTGGGGTTCCGGCGATCAGGGGGGCCG-GGGGGTGTGCGCACATGATGTG
*
16877720 CGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
16877785 ACCCCCTTAAAGAGCATTTTAGATTTTATAGGTTTGTTGCAAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
16877850 TGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
*
16877915 TGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * *
16877980 ATTTTAAAAAATCCTGAACCGAAAAAAGTTTCAAAAATCATGAAAAATAAAAAATGAATCGTCTT
455 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
16878045 GTCATGAAACTTCACGTGAAGGATTAAGGGACCATTGTATGAATTT-------AT----A----A
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
16878095 ---GC---C----AT-T---G-TATG----AACCCACCTACCACCCTATCGATCCACGGCTTGCA
585 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
16878141 CATCCCGTCTCTCTGGCTGACGTAGTGCCCGCCCACCCG-CTGCCCGCTCGTTTCGTCGGTTGGC
650 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCGTCCGCTCGTTTCGTCGGTTGGC
* * * * * * *
16878205 ATAGGCATACGGAGTTCATTCCCAATCTAAGATCTGATCGGATCGAGGGTTACGGTAGCAGGATC
715 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCAGGATC
* * * * ** *
16878270 GACAGCACGCAGAGGGGCAC-CTGACCGATCCCCGACTTATGCATCCCGCCCCTCTGGCCGGTTG
780 GGCAGCACGCAGAGGGGGACTC-GATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
** ** * * * **
16878334 AATGCTTGCACGCTC-ATTCATGGGTTGACTTAGGCATACGAAGTTCATTTTCAGTCTAA
844 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * **
16878393 GGATACGGAGTTCATTCCCAGTCTAAGATCGGATCACACCAAGGGTTGTGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGTAGCACATGCTGGG
* * * * *
16878458 CTCGGGCATGTGTTGGTGCCACATTTTTCTTCACCGGGGCACCATCACCAGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGAGA
** * * *
16878523 ACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCGGCGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
16878588 GGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * *
16878653 CCCTCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGGCAGTAGCCATTAAAGTGTCTGGAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
16878718 GGGGCACTTTT
326 GGGACACTTTT
16878729 ACAAGCCATA
Statistics
Matches: 6569, Mismatches: 825, Indels: 199
0.87 0.11 0.03
Matches are distributed among these distances:
867 146 0.02
868 190 0.03
869 133 0.02
870 64 0.01
871 1 0.00
873 63 0.01
874 372 0.06
875 12 0.00
876 1 0.00
878 2 0.00
879 5 0.00
880 6 0.00
883 43 0.01
884 232 0.04
885 22 0.00
886 3 0.00
887 261 0.04
889 5 0.00
892 2 0.00
893 39 0.01
894 8 0.00
895 778 0.12
896 169 0.03
897 518 0.08
898 157 0.02
899 2 0.00
900 148 0.02
901 837 0.13
902 1145 0.17
903 535 0.08
904 532 0.08
905 136 0.02
906 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (903 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGTAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGGCGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCGTCCGCTCGTTTCGTCGGTTGGCT
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCAGGATCG
GCAGCACGCAGAGGGGGACTCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:16872164 original size:26 final size:26
Alignment explanation
Indices: 16872128--16872180 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16872118 GTTGACTTAG
16872128 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16872154 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16872180 G
1 G
16872181 ATCAGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16873545 original size:26 final size:26
Alignment explanation
Indices: 16873506--16873562 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
16873496 CTCCATCCGA
* **
16873506 AAAAATTTTAAAAAATCCTGAACCAT
1 AAAAAGTTTAAAAAATCCTGAAAAAT
* *
16873532 AAAAAGTTTCAAAAATCGTGAAAAAT
1 AAAAAGTTTAAAAAATCCTGAAAAAT
16873558 AAAAA
1 AAAAA
16873563 ATGGGTCGTC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.60, C:0.11, G:0.07, T:0.23
Consensus pattern (26 bp):
AAAAAGTTTAAAAAATCCTGAAAAAT
Found at i:16873952 original size:26 final size:26
Alignment explanation
Indices: 16873915--16873967 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16873905 GTTGACTTAG
* *
16873915 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16873941 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16873967 G
1 G
16873968 ATCGAACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16875729 original size:26 final size:26
Alignment explanation
Indices: 16875699--16875751 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16875689 GTTGACATAG
16875699 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16875725 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16875751 G
1 G
16875752 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16876633 original size:26 final size:26
Alignment explanation
Indices: 16876597--16876649 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16876587 TTCGTGGGGG
*
16876597 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16876623 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16876649 G
1 G
16876650 ATGGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16877532 original size:26 final size:26
Alignment explanation
Indices: 16877496--16877551 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
16877486 TGGTTTGACT
*
16877496 TAAGCATACGGAGTTTATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
16877522 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
16877548 TAAG
1 TAAG
16877552 ATCGGATCAG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:16878015 original size:26 final size:26
Alignment explanation
Indices: 16877972--16878023 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16877962 AAAACTCCTT
* *
16877972 CCGAAAAAATTTTAAAAAATCCTGAA
1 CCGAAAAAAGTTTAAAAAATCATGAA
*
16877998 CCGAAAAAAGTTTCAAAAATCATGAA
1 CCGAAAAAAGTTTAAAAAATCATGAA
16878024 AAATAAAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.54, C:0.15, G:0.10, T:0.21
Consensus pattern (26 bp):
CCGAAAAAAGTTTAAAAAATCATGAA
Found at i:16878399 original size:26 final size:26
Alignment explanation
Indices: 16878369--16878419 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
16878359 TGACTTAGGC
**
16878369 ATACGAAGTTCATTTTCAGTCTAAGG
1 ATACGAAGTTCATTCCCAGTCTAAGG
*
16878395 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
16878420 ATCGGATCAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGG
Found at i:16879898 original size:26 final size:26
Alignment explanation
Indices: 16879869--16879919 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
16879859 CTGACTTAGG
*
16879869 CATACGGAGTTTATTCCCAGTCTAAT
1 CATACGGAGTTCATTCCCAGTCTAAT
16879895 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
16879920 GATCGGACCG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAT
Found at i:16880941 original size:185 final size:185
Alignment explanation
Indices: 16880616--16881019 Score: 497
Period size: 185 Copynumber: 2.2 Consensus size: 185
16880606 GTTGGCTTAG
* * * *** * * * *
16880616 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-AGA-CAAAGGGTCATGGTAGTAGGATCGG
1 GCATACGGAGTTCATTCTCAGTCTAAGATCAGACCGA-ATC-AAGGATTGCGGTAGCAAGATAGA
* * * * * *
16880679 CAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGTTGAGC
64 CAGTACGCAGAGGGGGACCCGGCCAATCCCCGACTTGCACATCCCACCCCTCTGGCCGGCTGAGC
*
16880744 GCCCAAACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
129 GCCCAAACGCTCGTTTCGTGGGTTAACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * *
16880801 GGATACGGAGTTCATTTTTAGTCTAAGATCAGACCGAATCAAGGATTGCGGTAGCAAGATAGACA
1 GCATACGGAGTTCATTCTCAGTCTAAGATCAGACCGAATCAAGGATTGCGGTAGCAAGATAGACA
* * * * * *
16880866 GTACGCAGAGGGGGACCTGGCCAATCTCTGACTTGCACATCCCGCCCCTCTGGCCTGCTGAGCGG
66 GTACGCAGAGGGGGACCCGGCCAATCCCCGACTTGCACATCCCACCCCTCTGGCCGGCTGAGCGC
** *
16880931 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
131 CCAAACGCTCGTTTCGTGGGTTAACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* *
16880986 GCTTACGGATTTCATTCTCAGTCTAAGATCAGAC
1 GCATACGGAGTTCATTCTCAGTCTAAGATCAGAC
16881020 TGGACCGAGG
Statistics
Matches: 183, Mismatches: 34, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
185 181 0.99
186 2 0.01
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Consensus pattern (185 bp):
GCATACGGAGTTCATTCTCAGTCTAAGATCAGACCGAATCAAGGATTGCGGTAGCAAGATAGACA
GTACGCAGAGGGGGACCCGGCCAATCCCCGACTTGCACATCCCACCCCTCTGGCCGGCTGAGCGC
CCAAACGCTCGTTTCGTGGGTTAACTTAGGCATACGAAGTTCATTCCCAGTCTAA
Found at i:16882352 original size:11 final size:11
Alignment explanation
Indices: 16882332--16882365 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
16882322 GGCCAAAACT
16882332 TATTTCAAAAA
1 TATTTCAAAAA
*
16882343 TATTTAAAAAA
1 TATTTCAAAAA
*
16882354 TGTTTCAAAAA
1 TATTTCAAAAA
16882365 T
1 T
16882366 TGTGAAAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.53, C:0.06, G:0.03, T:0.38
Consensus pattern (11 bp):
TATTTCAAAAA
Found at i:16882616 original size:26 final size:26
Alignment explanation
Indices: 16882580--16882632 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16882570 GTTAACTTAG
16882580 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
16882606 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16882632 G
1 G
16882633 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16882642 original size:905 final size:907
Alignment explanation
Indices: 16880701--16882645 Score: 2448
Period size: 905 Copynumber: 2.2 Consensus size: 907
16880691 GGGGACCCGG
* * * * **
16880701 TCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGT-TGAGCGCCCAAACGCTCGTTTCGTGG
1 TCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGTGT-AGTGCCCGCACGCTCGTTTCGTGG
* ***
16880765 GTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGGATACGGAGTTCATTTTTAGTCTAAGAT
65 GTTAACTTAGGCATAC-GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * * * *
16880830 CAGA-C---CGAATCAAGGATTGCGGTAGCAAGATAGACAGTACGCAGAGGGGGACCTGGCCAAT
129 CAGATCAGACCAACCAAGGATTACGGTAGCAAGATAGACAGCACACAGAGGGGGACCAGACCAAT
* * * * *
16880891 CTCTGACTTGCACATCCCGCCCCTCTGGCCTGCTGAGCGGCCGCACGCTCGTTTCGTGGGTTGAC
194 CCCCGACTTGCACATCCCGCCCCTCTGGCCGGCTGAGCGCCCGAACGCTCGTTTCGTGGGTTGAC
* * *
16880956 TTAGGCATACGAAGTTCATTCCCAGTCTAAGCTTACGGATTTCATTCTCAGTCTAAGATCAGACT
259 TTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCTCAGTCTAAGATCAGACT
* * **
16881021 GGACCGAGGGTTACGATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCTTTTTTCTTCGTC
324 GGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACC
* **
16881086 GGGGCACCATCGCTGGAGCATCGTCGGAGAACCTGACCGGTAGCATTAGGGTTCTGGTGATCGGG
389 GGGGCACCATCGCTGGAGCATCGTCGGAGAACCTGACCGGTAGCATTAGGGTTCCGACGATCGGG
*
16881151 GGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
454 GGGGCCAGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
16881216 CTATCACTCATCAAACCTCGAGAACTAACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
519 CTATCACTCATCAAACCTCGAGAACTAACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
16881281 CTGCCAGTAGCCATTAAAGTGTTCGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
584 CTGCCAGTAGCCATTAAAGTGTTCGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* *
16881346 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAACAAAAATATAAGCATCACGTCTACCA
649 CACTTCGAGTTTTTAGCTAAATTTTTTTGTGCAAGCCAACAAAAATACAAGCATCACGTCTACCA
*
16881411 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCAAACCGTAAAAATTTCAAAAA
714 AGTTTGGGGCCAAAACTCATTCCGAAAAAATTTTAAAAAA-CT---A--G-----ATTTCAAAAA
* *
16881476 TAATGAAAAATAGAAAATGAGTCGTCTGGCCATGAAACTTCACGTAAAGGCTTAAGGGACCATTG
768 TAATGAAAAATAGAAAACGAGTCATCTGGCCATGAAACTTCACGTAAAGGCTTAAGGGACCATTG
*
16881541 TATGAATTTACAAGCCTTAAAAATGGCATTCATACATAGAAATATGAAGATGTACCTAAACCCAC
833 TATGAATTTACAAGCCATAAAAATGGCATTCATACA-AGAAATATGAAGATGTACCTAAACCCAC
*
16881606 CTACCACCCTA
897 CTACCACACTA
* ** ** * * * * * ** *
16881617 TCGATCCATGGCTTGCGCATCCTGTCTCTCTGGCCGACGTTGTGCTCGCCCACCCG-CCCGCCGC
1 TCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGTGTAGTGCCCGCACGCTCGTTTCG-TG-
** * * ** *
16881681 CCTCTCA-TT--TCAT-CG-G----TTGGC--T-TAGGCATACGGAGTTCATTCCCAGTCTAAGA
64 GGT-TAACTTAGGCATACGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * * * *
16881734 TCAGACCAG----ACCAAGGGTTACGGTAGTAGGATCGACAGCACACAGAGGGGGACCAGATCGA
128 TCAGATCAGACCAACCAAGGATTACGGTAGCAAGATAGACAGCACACAGAGGGGGACCAGACCAA
* * * *
16881795 TCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGTGCCCGAACGCTCGTTTCGTGGGTTGA
193 TCCCCGACTTGCACATCCCGCCCCTCTGGCCGGCTGAGCGCCCGAACGCTCGTTTCGTGGGTTGA
** *
16881860 CTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATATTAAGTTCATTC-CTAGTCTAAGATCGGA
258 CTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCTC-AGTCTAAGATCAGA
* ** * * * *
16881924 -TCGGACTGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCGTGTGTTGGTGTCGCATTTTTCTTC
322 CT-GGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
* *
16881988 ACCGGGGCACCATCGCTGGAGCATCGTCGGAGAACCTGA-CTG-ACGACATTGGGGTTCCGACGA
386 ACCGGGGCACCATCGCTGGAGCATCGTCGGAGAACCTGACCGGTA-G-CATTAGGGTTCCGACGA
*
16882051 TCGGGGGGGCCGGGGGGTGTACGCACATGATGTGCGATGGGTGCTAGG-ACTTGGCCCTTATATT
449 TCGGGGGGGCCAGGGGGTGTACGCACATGATGTGCGATGGGTGCT-GGTACTTGGCCCTTATATT
* **
16882115 GGCCCCCTATCCCTCA-CAAACCTCGAGAACTCTCACCCCCTTAAAGAGCATTTGAGATTTTACA
513 GGCCCCCTATCACTCATCAAACCTCGAGAACTAACACCCCCTTAAAGAGCATTTGAGATTTTACA
*
16882179 GGTTTGCTGCCAGTAGCCATTAAAGTG-TCTGAAATGGGGACACTTTTTTGAAATGGTCACAAAA
578 GGTTTGCTGCCAGTAGCCATTAAAGTGTTC-GAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * *
16882243 TCTTGTACACTTCGAGTTTTTTGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
642 TCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCAAGCCAACAAAAATACAAGCATCACG
* * * * **
16882308 TCTATCAAGTTTTGGGCCAAAACTTATTTC--AAAAATATTTAAAAAA-T-G-TTTCAAAAATTG
707 TCTACCAAGTTTGGGGCCAAAACTCATTCCGAAAAAAT-TTTAAAAAACTAGATTTCAAAAATAA
* * *
16882368 TGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTTACGTGAAGGCTTAAGGGACCATTGTAT
771 TGAAAAATAGAAAACGAGTCATCTGGCCATGAAACTTCACGTAAAGGCTTAAGGGACCATTGTAT
* * *
16882433 GAATTTACAAGCCATAAAAATGGCATTGGCATGC-AGAAATATGAAGATGTGCCTTAACCCACCT
836 GAATTTACAAGCCATAAAAATGGCATT--CATACAAGAAATATGAAGATGTACCTAAACCCACCT
16882497 ACCACACTA
899 ACCACACTA
** *
16882506 TCGATCCACGGCTTGCGCATCCCATCTCTCTGATCGGTGTAGTGCCCGCACGCTTGTTTCGTGGG
1 TCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGTGTAGTGCCCGCACGCTCGTTTCGTGGG
16882571 TTAACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
66 TTAACTTAGGCATAC-GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
16882636 AGATCAGACC
130 AGATCAGACC
16882646 GAGGGTTGTG
Statistics
Matches: 871, Mismatches: 125, Indels: 79
0.81 0.12 0.07
Matches are distributed among these distances:
887 2 0.00
888 3 0.00
889 176 0.20
890 5 0.01
891 5 0.01
892 1 0.00
893 1 0.00
895 1 0.00
897 3 0.00
899 1 0.00
900 38 0.04
901 1 0.00
902 6 0.01
903 12 0.01
904 196 0.23
905 360 0.41
906 4 0.00
908 3 0.00
912 1 0.00
913 1 0.00
914 1 0.00
915 5 0.01
916 39 0.04
917 4 0.00
918 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (907 bp):
TCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGTGTAGTGCCCGCACGCTCGTTTCGTGGG
TTAACTTAGGCATACGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
GATCAGACCAACCAAGGATTACGGTAGCAAGATAGACAGCACACAGAGGGGGACCAGACCAATCC
CCGACTTGCACATCCCGCCCCTCTGGCCGGCTGAGCGCCCGAACGCTCGTTTCGTGGGTTGACTT
AGGCATACGAAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCTCAGTCTAAGATCAGACTGG
ACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGG
GGCACCATCGCTGGAGCATCGTCGGAGAACCTGACCGGTAGCATTAGGGTTCCGACGATCGGGGG
GGCCAGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
ATCACTCATCAAACCTCGAGAACTAACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
GCCAGTAGCCATTAAAGTGTTCGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
CTTCGAGTTTTTAGCTAAATTTTTTTGTGCAAGCCAACAAAAATACAAGCATCACGTCTACCAAG
TTTGGGGCCAAAACTCATTCCGAAAAAATTTTAAAAAACTAGATTTCAAAAATAATGAAAAATAG
AAAACGAGTCATCTGGCCATGAAACTTCACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAA
GCCATAAAAATGGCATTCATACAAGAAATATGAAGATGTACCTAAACCCACCTACCACACTA
Found at i:16883123 original size:26 final size:26
Alignment explanation
Indices: 16883087--16883139 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16883077 ATTGACTTAG
16883087 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16883113 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16883139 G
1 G
16883140 ATCGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16886891 original size:26 final size:26
Alignment explanation
Indices: 16886851--16886903 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16886841 GTTGACTTAG
*
16886851 GCATACGAAGCTCATTCCCAGTCTAA
1 GCATACGAAGCTCATTCCCAATCTAA
* *
16886877 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGCTCATTCCCAATCTAA
16886903 G
1 G
16886904 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGCTCATTCCCAATCTAA
Found at i:16887764 original size:26 final size:26
Alignment explanation
Indices: 16887735--16887787 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16887725 GTTGACTTAG
16887735 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
* *
16887761 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
16887787 G
1 G
16887788 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:16888654 original size:26 final size:26
Alignment explanation
Indices: 16888615--16888667 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16888605 GTTGACTTAG
*
16888615 GCATATAGAATTCATTCCCAATCTAA
1 GCATACAGAATTCATTCCCAATCTAA
* *
16888641 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAATTCATTCCCAATCTAA
16888667 G
1 G
16888668 ATCAAAAAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.34, C:0.25, G:0.13, T:0.28
Consensus pattern (26 bp):
GCATACAGAATTCATTCCCAATCTAA
Found at i:16890450 original size:26 final size:26
Alignment explanation
Indices: 16890414--16890466 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16890404 GTTGACTTAG
16890414 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
16890440 GCATACGGAGTTCGTTGCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16890466 G
1 G
16890467 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16890866 original size:895 final size:895
Alignment explanation
Indices: 16885990--16891396 Score: 6842
Period size: 902 Copynumber: 6.1 Consensus size: 895
16885980 GTTGACTCAG
* * * * **
16885990 GCATGCGGAGTTCATTCCCAGTCTGAGATC-GATCTGGACCAAGGGTTCCGATAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CCGGACCAAGGGTTGCGGCAGCACATGCTGG
* * * *
16886054 GCTCGGGCATGTCCTGGTGCCGCATTTTTCTTC-ACGTGGGCACCATCGCCGGAGCATCGCTGGA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCG-GGGCACCATCGCCGGAGCATCACCGGA
* * * * * * *
16886118 GAACTTGACCGACGGCATTAGGGTTCTGACGATCAGGAGGGCTTGGGGGGTGTG-GCACATGATG
129 GAACCTGACCGATGGCATTGGGGTTCCGACGATCGGGGGGGC-CGGGGGGTGTGCGCACATGATG
* * * *
16886182 TGCGATGGGTGCTGGTAGTTGGCCCTTATATTGGCCCCCTGTCCCTCATTAAACCTCAAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
16886247 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCGGCCAGTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
16886312 ATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGACTTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * **
16886377 TGTGCATGCCTACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGTCAAAAATCCTTTTAAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
* **
16886442 AAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCGTC
453 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTC
* * *
16886507 TTGCCATGAAAGTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACGAGCCATAACAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
16886572 CATTGGCACGTAGAAATATGAAGATATGCCTAAATCCACCTACCACCCTATCGATCCATGGCTTG
583 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
16886637 TGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-CC-AC-C--CATTTCGTCGGTTGGCTAAGGCA
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCGCTTCGTTTCGTCGGTTGGCTTAGGCA
* * * * * * * *
16886695 TACGGAGTTCAATCCCAGTCTAAGATTAGACC-GAACTGAGAGTTGTGGTAGGAGGATC-AGCAG
713 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGGACCGAGGGTTGCGGCAGCAGGATCGA-CAG
* * * * ** *
16886758 CACACAGAGGGGGACCCGTTCGATCCTCGGCATT-CGTATCCCGCCCCTCTGGCTAGCTGAGGGC
777 CACGCAGAGGGGGACCCGATCGATCCCCGGC-TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * * *
16886822 CCGCACGTTCGTTTCGTGGGTTGACTTAGGCATACGAAGCTCATTCCCAGTCTAA
841 CCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
16886877 GCATACGGAGTTCATTCCCAATCTAAGATCGGATCGGACCAAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
* * * * **
16886942 CTCGGGCATGTGCTGGTGCTGTATTTTTCTTCGTC-GGG-----T---C--ATCATCATTGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCACCGGAGA
* * * * * * * *
16886996 ACCTGATCAATGACATTGGGGTTTCGGCGATCAGGGGGGTCGGGGGGGTGTGCGGACATGATGTG
131 ACCTGACCGATGGCATTGGGGTTCCGACGATC-GGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* ** *
16887061 CGATGGGTGCTGATACTTGGCATTTAT-TGTGGCCCCCTATCACTCATCAAACCTCGAGAACTCA
195 CGATGGGTGCTGGTACTTGGCCCTTATAT-TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
16887125 CACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGAGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
16887190 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACGCTTCGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * **
16887255 GTGCTTGCCAA-AAAAATAC-AGGTATCACATCAACCAAGTTTGGTTCCAAAACTCCTTTCGAAA
389 GTGCATGCCAACAAAAATACAAGG-ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
* * ** *
16887318 AAATTTAAAAAAATCCTGAATTGCAAAAAGTTTCAAAAATCGTTG-AAAATAGAAAATGAGTCGT
453 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATC-ATGAAAAATAGAAAATGAGTCGT
* * *
16887382 CTTGCCATGAAACTTAATGTGAAGGCTTAAGGGACCATTGTATGAGTTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
16887447 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
582 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
16887512 GCGCATCCCGTCTCTCTGGTCGGTGTAGTGCCCGCCTGCCTAC-TCGTTTTGTCGGTTGGCTTAG
647 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC-GCC-GCTTCGTTTCGTCGGTTGGCTTAG
* * **
16887576 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CTGGACCAAGGGTTGCAACAGCAGGATCGAC
710 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGGACCGAGGGTTGCGGCAGCAGGATCGAC
* * *
16887640 AGCACGCAGTGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCG
775 AGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * * * *
16887705 CCCACACGTTCGTTTCATGGGTTGACTTAGGCATACGGAGCTCATTCCCAGTCTAA
840 CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
16887761 GCATATGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCAAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
* * * * * ** *
16887826 CTCAGGCATGTGCTGGTGCCGCATTTCTCTTCGCTGGGTCATCATCGTTGGAG-A--ACC--TG-
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCACCGGAGA
* * * * *
16887885 ACCCG--C-A--GTATTGGGGTTCCGATGATC-AGGGGGTCGGGGGGTGTCTGCGCACATGATGT
131 ACCTGACCGATGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTG--TGCGCACATGATGT
* *
16887944 GCGATGGGTGCTGGTACTTGTCCCTTATATTGGCCCCCTATCGCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
16888009 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAATGTGTCTAAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
16888074 TGGGGATACTTTTTTCAAACGGTCACAAAATCTTGTACACATT-GGGTTTTTAGCTGAATTGTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TTCGAGTTTTTAGCTGAATTTTTT
* * *
16888138 TGGGCATGCTAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAGAACTCCTTTCGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
* * ** *
16888203 AAATTTCAAAAAATCCCTAACAACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTC
453 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTC
16888268 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * * * *
16888333 CGTT-GCATGCAGAAATATGAAGTTGTTCTTAAACCCACCTACCACCCTATCGATCGACAGCTTG
583 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
** ** *
16888397 CGCATCCCGTCTCTCTGATCGGTATAGTGCCAG-C-CCG-TTCGTTTCGTCGGTTGGCTTAGGCA
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCGCTTCGTTTCGTCGGTTGGCTTAGGCA
** * * * * * * * *
16888459 TACATAATTCACTCCCAGTCTAAGATCAGACCA-GATCGAGGGTTACAGTAGTAGGATCGATAGC
713 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGGACCGAGGGTTGCGGCAGCAGGATCGACAGC
* * * *
16888523 ACGCAGCGAGGGACCC-AGTCGATCCCCGGCTTGCGCATCCCGCCACTCTGGCCGGCTGAGTGCC
778 ACGCAGAGGGGGACCCGA-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* * ** * *
16888587 CGCACACTCGTTTCGTGGGTTGACTTAGGCATATAGAATTCATTCCCAATCTAA
842 CGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** ** ** *** * **
16888641 GCATACAGAGTTCATTCCCAGTCTAAGATCAAAAAGGACTGAGGGTTGCAATAGCACAAGCTATG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
* * **
16888706 CTCGGGCATGTGCTTGTGCCGTATTTTTCTTCAG-CGGGGCACCATCGCCGGAGCATCGTCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-GCCGGGGCACCATCGCCGGAGCATCACCGGAG
* * * * *
16888770 AACTTGATCGATGGCATTGGGGTTCC-AGTGATCGGAGCGGCCGGGGGGGTGTGCGCACATGATG
130 AACCTGACCGATGGCATTGGGGTTCCGA-CGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATG
* * *
16888834 TGCGATGGGTGCTGGTTCTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAATTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
16888899 ACACACCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
16888964 ATGGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
16889029 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGAACAAAACTCCTTCCCAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CCAAAACTCCTTTCGAA
* * ** * *
16889094 AAAATTTTAAAAAATCCTGAACC-TAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGGGTCGT
452 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGT
*
16889158 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* **
16889223 GCATCGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
582 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
16889288 GCGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCAGCCCGTCTGTTCATTTCGTCGGTT
647 GCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-CC-GCC-G-CCG-C--TTCGTTTCGTCGGTT
* * * **
16889353 GGCTTAGGCATACGGAGTTCATTCTCAGTCTAAGA-AAGAACC-GGACTGAGGGTTGCGATAGCA
703 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGGACCGAGGGTTGCGGCAGCA
** * * * * * * *
16889416 GGATCGGTAGCACGCAGAAGGGGACCCGGTCGATCCCCGGCATGCGTATCTCACCACTCTGGCCG
767 GGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * * * * * *
16889481 ACTGAGCGCCCGGATGCTCATTTCGTGGGTTAACTTAGGCATACAGAGTTCATTCCCAATCCAT
832 GCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
16889545 GCAAATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
* * ** * * **
16889610 CTCGGGCATGTGTTGGTGCCGTATTTTTCTTCATC-GGGCACCATCGTCGGAGAATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCACCGGAGA
* ** * * *
16889674 ACCTGACTGGCGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCACATATGATGTGC
131 ACCTGACCGATGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * * *
16889739 GATGGGTGCTGGTACTTGGCCCTTATATAGGCACCCTATCCCTCATCAGACCTCGAGAACTGACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * * *
16889804 CCGCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTATCAATTAAAGTGTCTGAAATT
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
16889869 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
*
16889934 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CTTTCCAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTT-CGAAAAA
* **
16889998 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCGTCTT
455 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTT
16890063 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
16890128 TTGGCACACAGAAATATGAAGATGTGCTTAAACCCACCTACCACCCTATTGATCCACGGCTTGCG
585 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
16890193 CATCCCGTCTCTCTGGCTGGTGTAGTGCCCGTCCGCTCGCTT-GTTTCGTTGGTTGGCTTAGGTA
650 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CCGC-CGCTTCGTTTCGTCGGTTGGCTTAGGCA
* ** * *
16890257 TATGGAGTTCATTCCCAGTCTAAGATCAGACCAGGATTGAGGGTTGTGGCAGCAGGATCGCCAGC
713 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGGACCGAGGGTTGCGGCAGCAGGATCGACAGC
* * * *
16890322 ATGCAGAGGGGGACCCGACCGATCCGCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
778 ACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
16890387 GCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
843 GCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
16890440 GCATACGGAGTTCGTTGCCAGTCTAAGATCGGACCAGACCAAGGGTTACGGCAGCACAGGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
* * *
16890505 CTCAGCCATGTGCTGGTGACGCA-TTTTCTTCGCCGGGGCACCATCGCCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCACCGGAGA
* *
16890569 ACCTGACCGATGGCATCGGGGTTCCGGCGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGATGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGTG
*
16890634 CGATGGGTGCTGGTACTTGGCCCTTATAATGGCCCCCTATCCCTCATCAAATCCT-GAGAACTCA
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA-CCTCGAGAACTCA
* *
16890698 CCCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
16890763 TTGGGACACTTTTTT-AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * **
16890827 TTGTATGCCAAAAAAAATACACGGATCACGTCGACCAAGTTTGGGGATAAAACTCCTTTCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
* *
16890892 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAATTGAGTCGTCT
454 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCT
16890957 TGCCATGAAACTTCACGTGAAGG-TGTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
519 TGCCATGAAACTTCACGTGAAGGCT-TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
16891021 CATTAGCACGCAGAAATAT-AAGGATGTGCCTAAACCCACCTACCACCCTATTGATCTACGGCTT
583 CATTGGCACGCAGAAATATGAA-GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
16891085 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCGTCGATT
647 GCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCG-CCG-CCG-CT--TCGTTTCGTCGGTT
* * * * *
16891150 GGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCA-AACCAAGGGTTACGGC-GACA
703 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGGACCGAGGGTTGCGGCAG-CA
* * * * * * *
16891213 GGATCGATAGCATGCAGAAGGGGACCCGGTTGATCCCCGACTTGCGCATCCCGCCCCTTTGGCCG
767 GGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * *
16891278 AG-TGAGCACCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTGCCAGTCTAA
832 -GCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * *
16891342 GCATACAGAGTTCATTCCCAGTCTAAGATCATACCGGACCGAGGGTTACGG-AGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCA
16891397 TCGTCGGAGA
Statistics
Matches: 3927, Mismatches: 496, Indels: 180
0.85 0.11 0.04
Matches are distributed among these distances:
875 3 0.00
876 283 0.07
877 205 0.05
878 2 0.00
879 3 0.00
880 267 0.07
881 7 0.00
882 12 0.00
883 6 0.00
884 560 0.14
885 170 0.04
886 10 0.00
887 84 0.02
888 4 0.00
889 5 0.00
890 5 0.00
891 354 0.09
892 113 0.03
893 8 0.00
894 59 0.02
895 573 0.15
896 156 0.04
897 6 0.00
898 4 0.00
899 14 0.00
900 10 0.00
901 37 0.01
902 606 0.15
903 109 0.03
904 252 0.06
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCACCGGAGA
ACCTGACCGATGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAA
TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCGCTTCGTTTCGTCGGTTGGCTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGATCAGACCAGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACG
CAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
CGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:16891352 original size:26 final size:26
Alignment explanation
Indices: 16891316--16891368 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16891306 GTTGACTTAG
* *
16891316 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16891342 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16891368 G
1 G
16891369 ATCATACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16892303 original size:11 final size:11
Alignment explanation
Indices: 16892287--16892319 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
16892277 GCCGGGGCAC
16892287 CATCACCGGAG
1 CATCACCGGAG
16892298 CATCACCGGAG
1 CATCACCGGAG
16892309 CATCACCGGAG
1 CATCACCGGAG
16892320 ATCCTGATAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.27, C:0.36, G:0.27, T:0.09
Consensus pattern (11 bp):
CATCACCGGAG
Found at i:16893098 original size:26 final size:26
Alignment explanation
Indices: 16893062--16893114 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16893052 GTTGACTTAG
16893062 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16893088 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16893114 G
1 G
16893115 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16894002 original size:26 final size:26
Alignment explanation
Indices: 16893966--16894018 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16893956 GTTGACTTAG
16893966 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
16893992 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
16894018 G
1 G
16894019 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:16894501 original size:906 final size:904
Alignment explanation
Indices: 16891390--16896589 Score: 6207
Period size: 941 Copynumber: 5.8 Consensus size: 904
16891380 CCGAGGGTTA
*
16891390 CGGAGCATCG-TCGGAGAACCTGACCGGCGACATTGGGTTTCCGGCGAGT-GGGGGGGCCGAGGG
1 CGGAGCATCGCTCGGAGAACCTGACCGGCGACATTGGGGTTCCGGCGA-TCGGGGGGGCCGA-GG
* * * * * *
16891453 GGGGTATGCGCACATGATGTACGATGGGTACTGGTACTTGGCCATTATATTGGGCCCTTATCCCT
64 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* ** * * * *
16891518 CATAAAAAAT-TAGGAACTCACACCCCCTTAAAGAACATTTTAGATTTTACAGGTTTGCTTCCGG
129 CATCAAACCTCGA-GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAG
* *
16891582 TAGCCATTAAAGTTTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TCT
193 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-
* * *
16891646 AAGTTTTTAGCTGAATTTTTTT-TCCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTG
257 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
*
16891710 GGG-CAAAAC-ACCTTCCGAAAAAATTTTAAAAAATCCTGAATCGTAAAAAGTTTCAAAAATCAT
322 GGGCCAAAACTA-CTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCAT
* * *
16891773 GAAAAATA-AAAATTGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCAATGTAT
386 GAAAAATAGAAAA-CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* **
16891837 GAATTTACAAGCCATAAAAATGGCATTAGCACATAGAAATATGAAGATGTGCCTAAACCCACCTA
450 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
*
16891902 CCACCCTATTGATCCACGGCTTGCGCATCCCG-CTCTCTGGCCGACGTAGTGCCCGCTCGCCCGC
515 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGC-CG-CCGC
* * ** * * * *
16891966 CCGCTCACTTGTTTCGTCGGTTGGCTTATGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCA
578 CCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
* * *
16892031 GACCAAGGGTTACGGTGGTAGGATCGACAGCAAGCAGAAGGGGACCCGACCGATCCCCGACTTGC
643 GACCAAGGGTTACGGTAGTAGGATCGACAGCACGCAGAAGGGGACCCGACCGATCCCCGGCTTGC
* * *
16892096 GCATCCCGCCCCTCTGGCCGACTGAGCGCCTGCACACTCGTTTCGTGGGTTAACTTAGGCATACG
708 GCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * * * * *
16892161 GAGTTCATTCCTAGGCTAATCATATAGAGTTCATTCCCAGTCTAAAATCAGACCGGACCAAGGGT
773 GAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGT
* * * * * *
16892226 TGTGGTAGCACATGCTGGGCTCGGGCATCTGCTAGTGCCATATTTTTCTTCGCCGGGGCACCATC
838 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATC
16892291 AC
903 AC
* ** *
16892293 CGGAGCATCACCGGAGCATCACCGGAGATCCTGATAGGCGACATTGGGGTTCCGACGATCGGGGG
1 CGGAGCAT---C---GC-T---CGGAGAACCTGACCGGCGACATTGGGGTTCCGGCGATCGGGGG
*
16892358 GGCCGAGGGGGGTGTGCGCACATGATGTTCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
56 GGCCGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* *
16892423 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGA--TTACTGGTTTG
121 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* *
16892486 -TTGCCAGTAGCCACTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAAT-TTGG
186 CTT-CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT-G
* * *
16892549 TACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGCATCCCGTCTAC
249 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
* * * * **
16892614 CAAGTTTGGGG-AAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGTATAAAGTTTTGA
314 CAAGTTTGGGGCCAAAACTACTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAA
* *
16892678 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGATGGCTTAA-AGACCA
379 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* **
16892742 TTGTATGAATTTACAAGCCATAAAAGTGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACC
444 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACC
* * * *
16892807 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATTTTTCTGGCC-AGCATAGTGCCCG-C
509 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCGCC
* * *
16892870 -CCGCCCACCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
573 GCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * * * * * * * *
16892934 GGCCGGACCAAGGGTTGCGGCAGCAGGATTGGCAACATGCAGAGGGGGACCCGACCGATCCCTGG
638 GACCGGACCAAGGGTTACGGTAGTAGGATCGACAGCACGCAGAAGGGGACCCGACCGATCCCCGG
* * * * * * *
16892999 CATGCGTA-CCTCGCCCCTCTAGCTGGCTGAGCGCCTGCACGCTCATTTCGTGGGTTGACTTAGG
703 CTTGCGCATCC-CGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* *
16893063 CATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACC
767 CATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACC
* * * * * **
16893128 GAGGGTTACGGCAGCACAAGCTAGGCTTGGGCATGTGCTGGTGACACATTTTTCTTCACCGGGGC
832 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGC
*
16893193 ACCATCGC
897 ACCATCAC
* * * * *
16893201 CAGAGCATCAC-AGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGG
1 CGGAGCATCGCTCGGAGAACCTGACCGGCGACATTGGGGTTCCGGCGATCGGGGGGGCCGAGGGG
* * *
16893264 GGTGTGCGCATATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCGCA
66 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
** *
16893329 TCAAACCTTAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
131 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAG
* * *
16893394 CCATTAAAGTGTATGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGT
196 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
*
16893459 TTTTAGCTGAATTTTTTTGTGCATGCGAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
261 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * * *
16893524 CACAACAACTTTCGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCGAAAATCATGAAAA
326 CAAAACTACTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAA
* *
16893589 ATAGAAAACGAGTCATCTTGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
391 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
*
16893654 ACAAGCCATAAAAATGGCATTAGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
456 ACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * ** *
16893719 TATCAATCCACGGCTTGCGCATCCCATCTCTCTGGCAAACGTAGTGCCCGTCCGTCCGCTCGCCC
521 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG-CCG-CCGCCCGCCC
* * * *
16893784 TCTCATTTCATCGGTTGGCTTACGG-ATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACAA
584 GCTCATTTCGTCGGTTGGCTTA-GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCA
* * * * * * *
16893848 AGGGTTACGATGGCAGGATCGACAGTACGCAGAAAGGGACCTGATCGATCCCCGGCTTGCGCATC
648 AGGGTTACGGTAGTAGGATCGACAGCACGCAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATC
* * *
16893913 CCGCCCCTCTGGCCTACTGAGCGCCCGTACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
713 CCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* * * * **
16893978 CATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGGCCGAGGGTTGCAA
778 CATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGG
* * *
16894043 CAGCATATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATCAC
843 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCAC
* * *
16894105 CGGAGCATCGCT-GGAGATCCTGACCGGTGACATTGGGGTTCCGGCGATCGGGGGGGTCGAGGGT
1 CGGAGCATCGCTCGGAGAACCTGACCGGCGACATTGGGGTTCCGGCGATCGGGGGGGCCGAGGG-
* * * *
16894169 GGGTGTGCGCACTTGATGTGCAATGGGTACTGGTACTTGGCCATTATATTGGCCCCCTATCCCTC
65 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
** *
16894234 ATCAAAAATTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTA
130 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTA
* * * * *
16894299 GCCATTAAAGTTTCTGAAATGGGGACACTTTTTTTAAGTGGCCACAGAATCTTGTACACTTCGAG
195 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * * *
16894364 TTTTTAGCTGAATTTTTTTGTCCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTAGGA
260 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * * * *
16894429 ACAAAACTACTTCTGAAAAAATTTTAAAAAATCCTGAATCGCAAAAAGTTTCAAAAATCGTGAAA
325 CCAAAACTACTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAA
* *
16894494 AATAGAAAACGAGTCGTCTTACCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATGAATT
390 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* *
16894559 TACAAGCCATAAAAATGGCATTGGCACTCAAAAATATGAAGATGT-CCTAAACCCACCTACCACC
455 TACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * **
16894623 CTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCGACGCAGTG-CC-CAACCGCCCGCCCG
520 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCGCCGCCCGCCCG
* * * * *
16894686 CTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAGGATCGGACCGAACTAAG
585 CTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAG
* * *
16894751 GGTTACGGTAGTAGGATCGACAGCATGTAG-AGAGGGACCCGATCGATCCCCGGCTTGCGCATCC
650 GGTTACGGTAGTAGGATCGACAGCACGCAGAAG-GGGACCCGACCGATCCCCGGCTTGCGCATCC
* * * * *
16894815 CGCCCCTCTGGTCGACTAAACGCCCGCATGCTTGTTTCGT---TTG---T-----T---GA---C
714 CGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * *
16894863 -TT---AG-----GCATACGGAGTTCATTCCCAGTATAAGATCAGACCGGATCGAGGGTTGCGGC
779 ATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGC
* * **
16894919 AGCACATACTAGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGG------CA-
844 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCAC
* * * *
16894973 C----CATCG-TCGGAGAACCTGACCGGTGGCATTGGCGTTCCGGTGAT---------C--GGGG
1 CGGAGCATCGCTCGGAGAACCTGACCGGCGACATTGGGGTTCCGGCGATCGGGGGGGCCGAGGGG
* *
16895022 GGTGTGTGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
66 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* *
16895087 TCAAACCTCGAGAACTCACACCCCCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAG
131 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAG
* *
16895152 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGAACACTTTGAGT
196 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * * * * * *
16895217 CTTTAGATGAATTTTTTTTTGCATGCCAACAATAATACAAGGATCCCATCTACCAAGTTTGGGAC
261 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * ** *
16895282 CAAAACTCCTTCTGAAAAAATTTTAAAATATCCTGAACCGTAAAAAGTTTTGAAAATCGTGAAAA
326 CAAAACTACTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAA
* * * * *
16895347 ATAGAAAACGAGTAGTCTTACCATGAAACTTCACGTGAAGGCTTGAGGGACCATTGTTTGAATAT
391 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
16895412 ACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
456 ACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* *
16895477 TATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGCCCGCCC
521 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG-CCGC-CGCCCGCCC
* **
16895542 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GCACCGGACTG
584 GCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCA
* * * * * ** *
16895606 AGGGTTGCGGCAGTAGGATCGACAGCACACAG-AGGGAGACCCAACTGATCCCAAGCTTACGCAT
648 AGGGTTACGGTAGTAGGATCGACAGCACGCAGAAGGG-GACCCGACCGATCCCCGGCTTGCGCAT
* * * * * * *
16895670 CCCTCCCCTCTGGCCGGCTGAGCACCCGCATGCTTGTTTTGTGGGTTGACTTAGGGATACGGAGT
712 CCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* * ** * *
16895735 TCATTCCCAGTGTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCG
777 TCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCG
* * * * **
16895800 GTAGCACATGCTGGGCAGTCTAAGATCAGACCAGACCAAG-GGTTGTGGCAGCACATGCTGGGCT
842 GCAGCACATGCTGGGC--TC---G----G----G--CATGTGCTGGT-GC--CACAT--T--TTT
** * *
16895864 CAGGCAAGTGCTGGTGC-CACATTTTTCTTC
885 C-TTC--GT-C-GGGGCAC-CA----TC-AC
* * * * * * * *
16895894 GTCGGGGCACCATCG-TCGGAGAACCTGACCTGCGGCACTCGGGTTCTGCGTGATCGGGGGTGCC
1 --C--GG-AGCATCGCTCGGAGAACCTGACCGGCGACATTGGGGTTCCG-GCGATCGGGGGGGCC
* * * *
16895958 -AGGGGGGTGTGCACACATGATGTGTGATGGTTGCTGGTACTTGGCCCTTATATTGGCCCTCTAT
60 GAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * *
16896022 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTCAGATTTTATAGGTTTGCTGC
125 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTC
*
16896087 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTAACAAAATCTTGTACACT
190 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
*
16896152 GT-GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATC-AGCCAAG
255 -TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA-CCAAG
* * *
16896215 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT-CTCAAACCGCAAAAAGTTTCAAAAA
318 TTTGGGGCCAAAACTACTTCCGAAAAAATTTTAAAAAATCCT-GAACCGTAAAAAGTTTCAAAAA
* * * *
16896279 TCGTGGAAAATAGAAAATGAGTCGTCTTGCCATCAAACTTCACGTGAAGGCTTAAGGGACCATTG
382 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * *
16896344 TATGAATTTAGAAGCCATAAAAATGGCATTGGCACGTAGAAATATGATGATGTGCCTAAACCCAC
447 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCAC
* * ** * * *
16896409 CTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTAGCCGGTGAAGTACCCACCCGTC
512 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC-GCCG-C
* * * *
16896474 CGTCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCTTACGAAATTCATTCCCAGTCTAAGATCAGA
575 CGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* ** * * * * *
16896539 CCGAACTGAGGGTTGCGGCAGTAGGATTGGCAGCATGCAG-AGGGGAACCCG
640 CCGGACCAAGGGTTACGGTAGTAGGATCGACAGCACGCAGAAGGGG-ACCCG
16896590 TCTAACACAT
Statistics
Matches: 3725, Mismatches: 432, Indels: 242
0.85 0.10 0.06
Matches are distributed among these distances:
852 394 0.11
853 65 0.02
854 2 0.00
855 1 0.00
856 5 0.00
857 151 0.04
860 3 0.00
863 2 0.00
864 37 0.01
868 2 0.00
869 2 0.00
871 2 0.00
874 1 0.00
875 95 0.03
878 2 0.00
880 1 0.00
883 62 0.02
884 1 0.00
885 2 0.00
887 2 0.00
888 1 0.00
890 1 0.00
892 1 0.00
895 1 0.00
896 105 0.03
897 47 0.01
898 142 0.04
899 102 0.03
900 127 0.03
901 151 0.04
902 4 0.00
903 8 0.00
904 330 0.09
905 69 0.02
906 397 0.11
907 4 0.00
908 287 0.08
909 4 0.00
910 5 0.00
911 194 0.05
912 156 0.04
913 101 0.03
914 43 0.01
919 1 0.00
923 1 0.00
930 32 0.01
931 5 0.00
940 5 0.00
941 566 0.15
942 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (904 bp):
CGGAGCATCGCTCGGAGAACCTGACCGGCGACATTGGGGTTCCGGCGATCGGGGGGGCCGAGGGG
GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAG
CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
CAAAACTACTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAA
ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
ACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCGCCGCCCGCCCGC
TCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGG
GTTACGGTAGTAGGATCGACAGCACGCAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCG
CCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
TCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAG
CACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCAC
Found at i:16895539 original size:12 final size:12
Alignment explanation
Indices: 16895522--16895546 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
16895512 CCGGCGTAGT
16895522 GCCCGCCCGCTC
1 GCCCGCCCGCTC
16895534 GCCCGCCCGCTC
1 GCCCGCCCGCTC
16895546 G
1 G
16895547 TTTCGTCGGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.64, G:0.28, T:0.08
Consensus pattern (12 bp):
GCCCGCCCGCTC
Found at i:16895759 original size:26 final size:26
Alignment explanation
Indices: 16895721--16895771 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16895711 TGGGTTGACT
*
16895721 TAGGGATACGGAGTTCATTCCCAGTG
1 TAGGCATACGGAGTTCATTCCCAGTG
*
16895747 TAGGCATATGGAGTTCATTCCCAGT
1 TAGGCATACGGAGTTCATTCCCAGT
16895772 CTAAGATCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATTCCCAGTG
Found at i:16895842 original size:47 final size:47
Alignment explanation
Indices: 16895768--16895862 Score: 136
Period size: 47 Copynumber: 2.0 Consensus size: 47
16895758 AGTTCATTCC
* * * * *
16895768 CAGTCTAAGATCGGACCGGATCGAGGGTTGCGGTAGCACATGCTGGG
1 CAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCACATGCTGGG
*
16895815 CAGTCTAAGATCAGACCAGACCAAGGGTTGTGGCAGCACATGCTGGG
1 CAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCACATGCTGGG
16895862 C
1 C
16895863 TCAGGCAAGT
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 42 1.00
ACGTcount: A:0.24, C:0.23, G:0.35, T:0.18
Consensus pattern (47 bp):
CAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAGCACATGCTGGG
Found at i:16903749 original size:26 final size:26
Alignment explanation
Indices: 16903711--16903766 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
16903701 TGGGTTGACT
*
16903711 TAAGCATATGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
16903737 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
16903763 TAAG
1 TAAG
16903767 ATCAAACTGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:16904535 original size:26 final size:26
Alignment explanation
Indices: 16904506--16904558 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16904496 GTTGACTTAG
* *
16904506 GCATACGAAGTTTATTCCCAGTTTAA
1 GCATACGAAGTTCATTCCCAGTGTAA
* *
16904532 GCATACGGAGTTCATTCTCAGTGTAA
1 GCATACGAAGTTCATTCCCAGTGTAA
16904558 G
1 G
16904559 ATCAGACCTG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTGTAA
Found at i:16905800 original size:26 final size:26
Alignment explanation
Indices: 16905770--16905822 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16905760 GTTGACTTAG
*
16905770 GCATACGGAGTTCATTCCCAGACTAA
1 GCATACGAAGTTCATTCCCAGACTAA
*
16905796 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGACTAA
16905822 G
1 G
16905823 ATCGAACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGACTAA
Found at i:16907589 original size:26 final size:26
Alignment explanation
Indices: 16907559--16907611 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16907549 GTTGACTTAG
*
16907559 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGCTCATTCCCAATCTAA
*
16907585 GCATACGGAGCTCATTCCCAATCTAA
1 GCATACAGAGCTCATTCCCAATCTAA
16907611 G
1 G
16907612 ATCGGGTCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGCTCATTCCCAATCTAA
Found at i:16907930 original size:890 final size:886
Alignment explanation
Indices: 16904844--16924621 Score: 19914
Period size: 890 Copynumber: 21.9 Consensus size: 886
16904834 TAGCCATAAA
* * *
16904844 CTCGTTTCGTGGGTAGACTTAGGCATACAGAGTTCATTCCCAGTTTAAGCATACGGAGTTCATTC
1 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * ** * *
16904909 TCAGTCTAAAATTAGA-CTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGG
66 CCAGTCTAAGATCGGATC-GAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * * *
16904973 TGCTGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAGCCTGACCGACGGCAT
130 TGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-G-G-A------GA-A-CCTGACCGGCGGCAT
* * * * * *
16905038 TAGGGTTTCGACGATCAGGGGGGTCGGGGGGGTGTGCACACATGTTGTACGATGGGTGCTGGTAC
184 TGGGGTTCCGACGATC-GGGGGG-CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* * *
16905103 TTGGCCCTTATATTGGCCCCCTATCCCCCATCAAACCTCAACAACTCACACCCCCTTAAAGAGCA
247 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* * *
16905168 TTTGATATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATGAGGACAC-TTTTTCA
312 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
16905232 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
377 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAA-AAAAA
* * * * *
16905297 TACAAGGATCATGTCTACCAAGATTGGGGCCAAAAGTCCTTCCGAAAAAATTTTTAAAAATCCCG
440 AACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCG
* * *
16905362 AACCGTAAAAAGTTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTTAC
505 AACCGCAAAAAG-TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* ** *
16905427 GTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGATATAAAAATGGCATTGGCATGCAGAAAT
569 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAAT
16905492 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
634 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * *
16905557 ACCGGCGTAGTGCCCGCAC-GCCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACAGAG
699 GCCGGCGTAGTG-CCGC-CTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* ** * * * ** * *
16905621 CTCATTCCCAGTCTAAGATTGGACCGGACTGAGGGTTGTGGCAGTAGGATCACCTGCACACAGAG
762 TTCATTCCCAGTCTAAGATCAGACCAGAC-GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAG
* * * * * * **
16905686 GGAGACCCGACCAATCCCCGGCTTGCGCATCCCGCCCATCTGGCTGGCTGAGCACCCGTAAA
826 GG-GACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
* * *
16905748 CTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGACTAAGCATACGAAGTTCATTC
1 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * ** * *
16905813 CCAGTCTAAGATCGAACCGAAATGAGGGTTGCGGCAGTACATGCTGGGCTCGGGCATGTGCTAGT
66 CCAGTCTAAGATCGGATCGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * ** *
16905878 GCCGTATTTCTCTTCACCGGGGCACCATCG-CTGGAGAACCTGACCGGCGGCATTGGGGTTCTGA
131 GCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGAACCTGACCGGCGGCATTGGGGTTCCGA
* * * *
16905942 TGATCGGGGGGTC-GGTGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATAT
195 CGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* *
16906006 TGGCCCCCTATCCGTCATCAAACCTCGAGAACTCACACCCACTTAAAGAGCATTTGAGATTTTAC
260 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* *
16906071 AGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAA
325 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
*
16906136 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
390 TCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAA-AAAAAAACAAGGATCACG
* * *
16906201 TCTACCTAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGT
453 TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGT
* * *
16906266 TTCAAAAATCGTTAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAGGAGAAGGCTTAAGG
518 TTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
** **
16906331 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATTCAGATGTGCCT
583 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCT
* * * * * **
16906396 AAACCCACCTACCACTCTAATCGATCCATGGTTTGCACATTCCGTCTCTCTGGCCAACGTAGTGC
648 AAACCCACCTACCACCCT-ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC
* * * * * *
16906461 TCGCCCGTCCGCCCACCTGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCT
712 -CGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * * * * * * * *
16906526 AAGAAT-GGACCGGATCAAGGATTGCAGCAGTAGGATTGGTAGCACGTAGAGCAGGACCCGGTCG
776 AAG-ATCAGACCAGA-CGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAG-GGGACCCGATCG
** * *
16906590 ATCCTTGACTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACG
838 ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
* * *
16906639 CTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTA
1 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * * * *
16906704 CCAGTCCAAGATCGGA-CCAGACCGAGGGTTGCGACAGCACATACTGGGCTCGGGCATATGCTGG
66 CCAGTCTAAGATCGGATCGA-ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
*
16906768 TGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGACCATCGCCGGAGAACCTGACCGGCGGCAT
130 TGCCGCATTTTTCTTCGTCGGGGCACCA---TC-G----T---CGGAGAACCTGACCGGCGGCAT
* * *
16906833 T-GGGTTCCGATGATCGAGGGGGTCGGGTGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
184 TGGGGTTCCGACGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
*
16906897 TCGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
248 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* * * *
16906962 TTGAGATGTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATGAGGACACTTTTTTCAA
313 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* *
16907027 ATGGTCACAAAATCTTGTATACTTCGAGTTTTTAGCTGAATTTTTTCATGCATGCCAAAAAAAAA
378 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT-GTGCATGCCAAAAAAAAA
* * * * **
16907092 CAAGGATCATGTCTACCTAGATTGGGGCCAAAACACCTTCC-AAAAAATTTTAAAAAATCCTAAA
442 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAA
* * * * * *
16907156 CAGCAAAAAGTTTCAAAAATCGTTAAAAATAGAAAATGAGTCATCTTGCCATGAACCTTCACGAG
507 CCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* * *
16907221 AAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATT
572 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATG
* * *
16907286 AAG-TGTGCCTAAACCCACCTACCACTCTATCGATCCACGGCTTGTGCATCCCGTCTCTTTGGCC
637 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * * * * *
16907350 GGTGTAGTGCCCGCCTGCCCGCCCGCCTGCTCATTTCGTCGGTTGGCTTAGGCATATGAAGTCCA
702 GGCGTAGTG-CCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * * *
16907415 TTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCAGTAGCAGGATCGGCAGCACGTAGAGGGGG
766 TTCCCAGTCTAAGATCAGACCAGA-CGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGA
** * * * *
16907480 CCCGGCCGATCCCCGGCTTTCGCATCCCACCCCTCTGCCCGGCTGAGCGGCCGCACG
830 CCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
* * * *
16907537 CTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGCATACGGAGCTCATTC
1 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * * *
16907602 CCAATCTAAGATCGGGTCGAACCGAGGGTTACGGCAGCACATGCTGAGCTCGGGCATGTGCTGGT
66 CCAGTCTAAGATCGGATCGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* ** * * * *
16907667 GCCGTATTTTTCTTCACCGGGGCACCATCGTCGGAGAACCTGACCGGCGACACCTGGCGTACCGA
131 GCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGGCGGCA-TTGGGGTTCCGA
* *
16907732 CGATCGGGGGGCCAGAGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCTCTTAT
195 CGATCGGGGGGCC-G-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* * *
16907797 GTTGGCCCCCTATCCCTCATCAAACCTTGGGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
258 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
16907862 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
323 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* * * * * *
16907927 AATCCTGTAAACTTTGAGTTTTTAGCTGAATTATTTTATGCTTACCAAAAAAAATACAAGGATCA
388 AATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTGTGCATGCCAAAAAAAA-ACAAGGATCA
* * * *
16907992 CGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCTAACGGCAAAAA
451 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAA
*
16908057 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAA
516 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
*
16908122 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGC
581 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGC
* * * **
16908187 CTAAACCCACCTACCACCCTATCGATCC-CTGGCTAGCGCATCCCTTGTCTCTAACCGGC--A-T
646 CTAAACCCACCTACCACCCTATCGATCCAC-GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT
* * ** ** *
16908248 --AG--T----GCCCGCCCGCTCGTTTCGTCGGTTCGCTTAGATATACAAAGTTCATTCCAAGTC
710 GCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * * * * *
16908305 TAAGATCAGACCAGATTGAGGGTTGCAGCAGCAGGATCAGCAGCACGTAGAGGGGGACCCGGTTG
775 TAAGATCAGACCAGA-CGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGA-GGGGACCCGATCG
** * * * *
16908370 ATCCCCATCTTGCGCATCCCGCCCCTCTGGCCGACTGAGTGCCTGCACA
838 ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
* *
16908419 CTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTC
1 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * *
16908484 CCAGTCTAAGACCGGATC-AGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGT-ATGG
66 CCAGTCTAAGATCGGATCGA-ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
** *
16908547 TGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGGCAT
130 TGCCGCATTTTTCTTCGTCGGGGCACCA---TC---G-----TCGGAGAACCTGACCGGCGGCAT
16908612 TGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
184 TGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
16908677 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
248 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* *
16908742 TTGAGATATTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATGGGG-CACTTTTTTCAA
313 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* * *
16908806 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTCATGCATGCCAGCAAAAAT
378 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT-GTGCATGCCA-AAAAAAA
** *
16908871 ACAAGGATCATTTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT-AAAAATCCCTA
441 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGA
*
16908935 ACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
506 ACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
*
16909000 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATAT
571 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATAT
* *
16909065 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC-CTAGCTTGCGCATCCCGTCTCTCT-A
636 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC-GGCTTGCGCATCCCGTCTCTCTGG
* * * * **
16909128 AC-TCGT-GT--AG--T----GCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACAAAGTTC
700 CCGGCGTAGTGCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* *
16909183 ATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCATGCAGAGGGG
765 ATTCCCAGTCTAAGATCAGACCAGAC-GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGA-GGG
* ** * * * * * * *
16909248 GACCCGGTCGATCCCCATCTTGCTCATCCTG-CCCTTTGGCCCGACTAAGTGCCTGCACG
828 GACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG-CCGGCTGAGCGCCCGCACG
* *
16909307 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCACTC
1 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * * * * *
16909372 CTAGTCTAAGATCGAATCAAACCAAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGT-ATGGT
66 CCAGTCTAAGATCGGATCGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* ** *
16909436 GCCGTATTTTTCTTCACCGAGGCACCATCGTCGGAGCATCGTTGGAGAACCTGACCGGCGGCATT
131 GCCGCATTTTTCTTCGTCGGGGCACCA---TC---G--TC---GGAGAACCTGACCGGCGGCATT
* *
16909501 GGGGCTCCGACGAT--------CGGGGGGTGTGCGAACATGATGTGCGATGGGTGCTGGTACTTG
185 GGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
16909558 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
250 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* * *
16909623 GAGATATTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAAT
315 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * *
16909688 AGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATGTTTTTGTGCATGCCAACAAAAATAC
380 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTGTGCATGCCAA-AAAAAAAC
* * *
16909753 AAGGATCATGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTAAAAAATCCCAAAC
443 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAAC
* * * **
16909818 CGTAAAAAGTTTCGACAATTATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
508 CGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
** * *
16909883 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATGGAAATGGCATTGGCATGCAAAAATATGA
573 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGA
* * * * * * *
16909948 AGATGTGCCTAAACCAACCTACCACCCTATCAATCCATGACTTGTGCAACCCGCCTCTCTGGCCG
638 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * * * * *
16910013 ACGCAGTG-C-CC-GCCCGCCCGCCCGCTCATTTCGCCGATTGGCTTAGGAATACGGAGTTCATT
703 GCGTAGTGCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* *** * * * *
16910075 CCCAGTCTAAGATCGGATTGGACCGAGGGTTGCAGCAGTAGGATCGACAGCATC-CAAAGGGGGA
768 CCCAGTCTAAGATCAGACCAGA-CGAGGGTTGCGGCAGCAGGATCGGCAGCA-CGCAGA-GGGGA
* * * * * * * * *
16910139 CCCCACCCATCCCCAGCTTGCACATCCCACCCCTCTGGCCGGTTGAGCACCCGTACG
830 CCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
* * * * * *
16910196 CTCGTTTCATGGGTCGACGTAGGCATACGAAGTTCATTCCCAGTCTAAGCAT-TGG-G---GTT-
1 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* ** ** * * * * * * *
16910255 CC-G---ACGATCGG-GGGGGCTGGGGGGGTGGTGTGC-GCACATGATGTGGGATGGGTGC-TGG
66 CCAGTCTAAGATCGGATCGAAC--CGAGGGTTGCG-GCAGCACATG--CTGGGCTCGG-GCAT-G
* * ** * *** * * * ** **
16910313 TACTTG-GCC-C-TTATATTGGCCCCTATC-CCTCATCAAACCTC-GAGAACTCACACCCCCTTA
124 TGCTGGTGCCGCATT-T-TT--CTTC-GTCGGGGCA-CCATCGTCGGAGAAC-CTGACCGGC---
** * * ** *** ** *
16910373 AAGAGCATTTGAGATTTTACAGGTTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCAC
179 --G-GCA-TTG-G-GGTT-C-CG---ACG-ATCGGGGGGC-C-GG--GGGGT-GTG--CGCACA-
* * *** * ** *
16910438 TCG-T-TTCG-TCGGTTGGCTTAGGTA-TAT-GAAGTT-CATT--CCAAGTCTAAGATCAGACCA
224 T-GATGTGCGAT-GGGT-GC-T-GGTACT-TGGCCCTTATATTGGCC--CCCT---ATC---CCT
* * **** * * * ** * * *** ***
16910495 GACTGAGGGTTGTGGTAGCAGGA-TCGACA-GCACGAAGAAGGGGACCCGACCGA-TCCCCA--T
275 CA-TCA--AACCTCG-AG-A--ACTC-ACACCCCCTTA-AAGAGCATTTGA--GATTTTACAGGT
** * * ** * * * * * * * **
16910555 CTTGC-GCATCCCT-CCCCTCT-GGGCGGCT-AAGTGCCCGTACCCTCGTTTT--ACGGGTTCAC
329 -TTGCTGC--CAGTAGCCAT-TAAAGTGTCTGAAATG--GGGACACT-TTTTTCAAATGG-TCAC
** ** * * * * * * ** ** * * * ***
16910614 TTAGGCATAAGGA-ATTCATTCCCAG-TCTAAGCATACGGAGTTCATT-CCCA-GTCTAAGATCG
386 AAAATC-T-TGTACA--C-TT-CGAGTTTTTAGC-T---GAATTTTTTGTGCATGCCAAAAAAAA
** * * * * * * * *** *
16910675 GTACGGCAGCACATTCTAGGTTCGGGCATGTGCTGGAGCCGCATTTTTCTTCACCGGGGCACCAT
441 ACAAGG-ATCAC-GTCTA----C---CAAGT-TTGGGGCC-AAAACTCCTT--CC---G-A--A-
* *** * * ** * * * * * * **
16910740 CACCAGAGCATCGTCGGAGAA-CCTGGTCGGGGTTCCAAATG-GTCACAAAATCTTGTACACTTC
486 -A--A-A--AT-TTTAAAAAATCCCGAAC--CG--CAAAAAGTTTCA-AAAATCGTG-AAAAAT-
** * * * * ** * *
16910803 GAGTTTTTAGCTGAATTGTTTTGTACATACCAACAAACATACAAGGATCACGTCTACCAGGTTTG
537 -AG---AAAAC-G-A--G--TCGT-CTTGCCATGAAAC-T-------TCACGT-GA--AGGCTT-
*** * * ** * * **
16910868 GGAACAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTATG
579 --AA-GGGA--CCAT-TGTATGAA-TTT--ACAA----G--CCATAAAAA-TGGC----A-T-TG
** ** * * * * * ** **
16910933 AAAAATAGAAA-ACG-AGTCATCTTGCCATGAAACTTCACCTGA--AGGCTTAAGGGA-CCATTG
622 GCATGTAGAAATATGAAG--AT-GTGCC-T-AAAC-CCACCT-ACCA-CCCT-ATCGATCCACGG
**** ** *** * ** * ** *
16910993 -TATGAATTTACAAGTCATAAAAATGGCATTGGCATGTAGAAATATGAAGACGTGCCTAAACCCA
678 CT-TGCGCAT-CCCGTC-T--CTCTGGC--CGGC--GTAG-----TGCCG-CCTGCC--CGCCCG
* * * *** * * ** ** ** *
16911057 CCTAC-CACCCTATCGATC-CACGGCTT-GCGCATCCCGTCTCTC-TGGCCAGAGT-AG-TGCCC
726 CC--CGC-TCGTTTCG-TCGGTTGGCTTAG-GCATACGGAGT-TCATTCCCAGTCTAAGAT--CA
* * * * *
16911116 G-CCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTC-CCAGTCTAAGATCAG
783 GACCAG-ACG---A----G--GGTT-GC---GGCA-GCAG-G---A-TCGGCAG-C-ACG--CAG
** * * * * * ** * * *
16911179 ACCGGA-CCGAGGGTTG-TGGCAGCAGGATCGGCAGCATGCAAAGGGCAACCCGACCGATCCTCG
824 AGGGGACCCGA---TCGAT--C-CCCGGCT-TGC-GCAT-C---CCGC--CCC-TCTG--GC-CG
16911242 GCTG-GCGCATGCCGCCCCTCTGGCCGACTGAGCG
871 GCTGAGCG------------C---CCG-C--A-CG
* * * * *
16911276 CTCGCACGCTCATTTTGTGGGTTGACTTAGGCATATGAAGTTCATTCCCTGTCTAAGCATACAGA
1 CT----CG----TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * * * * *
16911341 GTTGATTCCCAATCTATGATCGGATTGCACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCAT
58 GTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
** *
16911406 GTGCTGGTGCCATAATTTTCTTCG-CTGGGGCACCATCACCGGAGCATCGTCGAAGAACCTGACC
123 GTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCAT---C---G--TCG--G-AGAACCTGACC
* * ** * *
16911470 GACGGCGTTGGGGTTCCGGTGATCGGGGGGGCTGGGGGTTGTGCGCACATGATGTGCGATGGGTG
176 GGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * * *
16911535 CTGGTACTTGGCCCTTATAAATT-G-CCCCTATCCCTCATCAAACGTGGAGAACTCATACCGCCT
240 CTGGTACTTGGCCCTTAT--ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* *
16911598 TAAAGAGCATTTGACATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AGAATAGGGAC
303 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA-AATGGGGAC
* * * * *
16911662 ACTTTTTTCAAATCGTGAC-AAATCTTGTACACTTGGAATTTTTAGCTAAATTGTTTTGTGCATG
367 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTGTGCATG
* * *
16911726 CCAAAAAAATACAAGGATCACGTCTACCAGGTTTGGGGCCAAAACTTCTTCCGAAAAAATTTTAA
431 CCAAAAAAAAACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* * *
16911791 AAAGTCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
496 AAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * *
16911856 AACTTCACGTGAAGGCTTAAGGGACTATTGTATGAATGTACAAGCCATAAAAATGGCATTGGCAC
561 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* *
16911921 ATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCA
626 GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * * *
16911986 TCCCTCTGGCCGACGTAGTGCCTG-CTCGCCCGTCTGCCTGCTCGTTTCGTCGGTTGGCTTAGGC
691 TCTCTCTGGCCGGCGTAGTGCC-GCCT-GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * *
16912050 ATACGGAGTTCATTCCCAGTATAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGTAGC
754 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CGAGGGTTGCGGCAGCAGGATCGGCAGC
* * * * * * * *
16912115 ATGCAGAGGGGAACCTGGTCGACCCCCGGCTGGCGCATACCGCCCCTCTGGCCGACTGAGCGCTC
818 ACGCAGAGGGG-ACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
16912180 GCA-G
882 GCACG
* * * * * *
16912184 ACTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCTGTCTAAGCATGCAGAGTTGACT
1 -CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* *
16912249 CCCAGTCTAAGATCGGATCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGG
65 CCCAGTCTAAGATCGGATCGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * *
16912314 TGCCGTAATTTTCTTCGTCGGGGCACCATTACCGGAGCATCGTCGGAGAACCTGACCGGCGGCGT
130 TGCCGCATTTTTCTTCGTCGGGG---C---A-C----CATCGTCGGAGAACCTGACCGGCGGCAT
** ** * *
16912379 TGGGGTTCCGGTGATCAAGGGGCTGGGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACT
184 TGGGGTTCCGACGATCGGGGGGC-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* * * *
16912444 TGGCCCTTATAAATGG-CCCCTATCCCTCATCAAACGTGGAGAACTCACACCGCCTTAAAGAGCA
248 TGGCCCTTAT-ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* *
16912508 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAATAGGGACACTTTTTTCA
312 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* *
16912573 AATGGTCACAAAATCTTGTACACTTGGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAACA
377 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTGTGCATGCCAA-AAAAA
* * * ** *
16912638 TACAAGGATCACGTCTACCAGGTTTAGGAACAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCG
440 AACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCG
*
16912703 AACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
505 AACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
*
16912768 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCATAAAAATGGCATTGGCATGTAGAAATA
570 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATA
*
16912833 TGAAGACGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
635 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
** * *
16912898 CCAACGTAGTG-C-CC-GCCCGGCCGCCCGCTCGTTTCGTCGGTTGGCTTAGTCATACGGAGTTC
700 CCGGCGTAGTGCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * ** * *
16912960 ATTCCCAGTCTAAGATCTGACCAGACCGAGGGTTCCGATAGCAGGATCGACAGCACGGAGAGGGG
765 ATTCCCAGTCTAAGATCAGACCAGA-CGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGA-GGG
* * * * * * * *
16913025 GACCCGGTCGATCCTCGACTTGCGCATCCCACCCCTCTGACCGGTTGAACGCCCGTACG
828 GACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
* * * *
16913084 CTCATTTTGTGGGTTCACTTAGGCATACGGAGTTCATTCCCATTCTAAGCATACGGAGTTCATTC
1 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * * * * *
16913149 CCAGTCTAAGATCGGACCGGACCGAAGGTTACGGCAGCACATACTGGGCTTGGGCATGTGCTGGT
66 CCAGTCTAAGATCGGATCGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
** *
16913214 GCTACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACTGGAGAACCTGACCGGCTGCATT
131 GCCGCATTTTTCTTCGTCGGGGCACCAT---C---G--T--C-GGAGAACCTGACCGGCGGCATT
* *
16913279 AGGGTTCCGGCGATCGGAGGGGCCATGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
185 GGGGTTCCGACGATCGG-GGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
*
16913344 TTGGCCCTTATATTGGCCCCCTATCCCTCGTCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCA
247 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* * * *
16913408 TTTGAGATTTTACGGGTTTACTGCCAGTAGCCATTAAAGTTTCTAAAATGGGGACAC-TTTTTCA
312 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * *
16913472 AATGATCACAAAATCTTGTACACTTCGAGTTTGTAGCTGAATTTTTTTATGCATGCCAAAAAAAA
377 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAAAAAAAA
* *
16913537 TACAAGGATCATGTCTACCAAGTTTGGGGTCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCG
441 -ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCG
* *
16913602 AACCGCAAAAAGTTTCAAAAATGGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATG
505 AACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* **
16913667 TGAAGGCTTAAGGGACCATTGTATGAATGTACAAGCCATAAAAATGGCATTGGCACATAGAAATA
570 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATA
* * *
16913732 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCAACCCATC-CTCTGG
635 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * * *
16913796 CCGACGTAGTGCCTGCCCGCCCGTCCGCCTGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTT
700 CCGGCGTAGTGCC-GCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * *
16913861 CATTCCCAGTCTAAGAACTGACC-GAACCGAGGGTTGTGGCAGCAGGATCGGCAGCATGCAGAGG
764 CATTCCCAGTCTAAGATCAGACCAG-A-CGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGG
* * * * *
16913925 GCAACCCGACCGATCCCCGG-TTGGTGCATCCCGCCCCTCTGGCCGACTGAGCGCTCGCACG
827 G-GACCCGATCGATCCCCGGCTT-GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
* * * * * *
16913986 CTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCTGTCTAAGCATACAGAGTTGATTC
1 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* *
16914051 CCAGTCTAAGATCGGATC-AGACCGAGGGTTGCAGCAGCACATACTGGGCTCGGGCATGTGCTGG
66 CCAGTCTAAGATCGGATCGA-ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * * **
16914115 TGCCGCAATTTTCTTCG-CTAGGGCACCATCACCAGAGTATCACCGGAGAACCTGACCGACGGTG
130 TGCCGCATTTTTCTTCGTC-GGGGCACCAT---C---G--T---CGGAGAACCTGACCGGCGGCA
* ** *
16914179 TTGGGGTTCCGATGATCGAGGGGGTTGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTAC
183 TTGGGGTTCCGACGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* * * * *
16914244 TTGGCCCTTATAAATGG-CCCCTATCCCTCATCAAACGTGGAGAACTCATACCGCCTTAAAGAGC
247 TTGGCCCTTAT-ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* *
16914308 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAATAGGGACACTTTTTTC
311 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* *
16914373 AAATCGTCAC-AAATCTTGTACACTTGGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAAAAAAA
376 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTGTGCATGCCAAAAAAA
* * * *
16914437 ATACAAGGATCACGTCTACCAGGTTTGGGGCCAAAACTTCTTTCGAAAAAATTTTAAAAAGTCCC
440 A-ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC
* *
16914502 GAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
504 GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* *
16914567 CTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAGTGGCATGTAGAAAT
569 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAAT
* * *
16914632 ATGAAGATGTACCTAAACCCACCTACCACCCGT-GCAATCCACGGCTTGCGCATCCCGTCTCTCT
634 ATGAAGATGTGCCTAAACCCACCTACCACCC-TATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* **
16914696 GGCCGGCGTA-----G--T----GCCCGCCCGCTCATTTAATCGGTTGGCTTAGGCATACGGAGT
698 GGCCGGCGTAGTGCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * *
16914750 TCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGTAGCTGGATTGGCAGCACGCAGAAG
763 TCATTCCCAGTCTAAGATCAGACCAGAC-GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAG-AG
* ** * * * *
16914815 GGGACCCGACCGATCCCCATCTTGCGCATCCCCCCCCTCTGGCCGGCTGAGTGCCCGTACC
826 GGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
* * *
16914876 CTCGTTTTGTGGGTTGACTTAGGCATAAGGAATTCATTCCCAGTCTAAGCATACGGAGTTCATTC
1 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * * * * * *
16914941 CCGGTCTAAGATCGGATCGGACGGAGGGTTGCGGCAGTACATGATGGGTTCGGGCATGTGTTGGT
66 CCAGTCTAAGATCGGATCGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * * *
16915006 GCCGCACTTTTCTTCGTCGGGGCACCATCACCGGACCATCGTCGGAGAACCTAACCAGAGGCATT
131 GCCGCATTTTTCTTCGTCGGGG---------C--ACCATCGTCGGAGAACCTGACCGGCGGCATT
*
16915071 GGGGTTCCGACGATCGGGGGGGCCAGGGCGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
185 GGGGTTCCGACGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
*
16915136 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCAT
248 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* * *
16915201 TTGAGATTTTACAGGTTTGCTGCCAGTAGCGAGTAAAGTGTCTGAAATGGGGACACTTTTTTGAA
313 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* *
16915266 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAAT
378 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAA-AAAAAA
* * * *
16915331 ACAAGGATCATG-CTTACCAAGTTTCGGGTCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCG
441 ACAAGGATCACGTC-TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCG
* * ** * ** *
16915395 AACCGTAAAAGGTTTTGAAAATGGTGAAAAATAGAAAACGAGTCGTCTTTTCATGAAACTTCATG
505 AACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* ***
16915460 TGAAGGCTTAAGGGACCATTGTATGAATGTACAAGCCATAAAAATGGCATTGGCACACAGAAATA
570 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATA
* * *
16915525 TGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGCATCCCATCCCTCTGG
635 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * * *
16915590 CCGGCGTAGTGCCTGCCCGCCCGTCCGCCCGCTCATTTTGTCCGTTGGCTTAGGCATACGGAGTT
700 CCGGCGTAGTGCC-GCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * *
16915655 CATTCCCAGTCTATGATCGGACCGGACTGAGGGTTGTGGCAGC---AT-----GCA-G-AGA-GG
764 CATTCCCAGTCTAAGATCAGACCAGAC-GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGG
* * * * *
16915709 AACCCGACCGATCCCCGGCTGGCGCATCCCGCCCCTCTGGCCGACTGAGCGCTCGCACG
828 GACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
* * * *
16915768 CTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCTGTCTAAGCATACAGAGTTGATTC
1 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* *
16915833 CCAGTCTAAGATTGGATC-AGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGG
66 CCAGTCTAAGATCGGATCGA-ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* ** * * * ** *
16915897 TGTCATAATTTTCTTCGTCGGGGAACCATCATCGGAGCATCACAGAAGAACCTGATCGGCGATGT
130 TGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAG-A--AC--CTG-ACC-G-GCGGC-A--T
* * ** *
16915962 TGGGGTTTCGATGATCAGGGGGGCTAGGGGGTGTGCGCACATGATGTGCGATTGGTGCTGGTACT
184 TGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* * * * *
16916027 TGGCCCTTAGAAATT-G-CCCCTATCCCTCATCAAACATGGGGAACTCACACCGCCTTAAAGAGC
248 TGGCCCTT--ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* *
16916090 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAATAGGGACACTTTTTTC
311 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* *
16916155 AAATGGTCACAAAATCTTGTACACTTGGAGTTTTTAGCTGAATTGTTTTGTGCATGCGAACAAAA
376 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTGTGCATGCCAA-AAAA
* * ** *
16916220 ATACAAGGATCACGTCTACCAGGTTTGGGAACAAAACTCCTTCCGATAAAATTTTAAAAAATCCC
439 AAACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC
* ** *
16916285 GAACCGTAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
504 GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* * *
16916350 GTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAAGCCATAAAAATGGCATT-ACATGGAGAAA
569 GTGAAGGCTTAAGGGACCATTGTATGAATTTA-CAAGCCATAAAAATGGCATTGGCATGTAGAAA
* *
16916414 TATGAAGATGTGCC-AAAACCACCTACCACCCTATCGAT-CACGGCTTGTGCAT-CCGATCTCTC
633 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG-TCTCTC
* * * * *
16916476 TGGCAGGCGTAGTGCC-CC-G-CC-ACTGCCCGCTCGATTCGTCGGTTAGCTTAGGCATACGGAG
697 TGGCCGGCGTAGTGCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * *** * * * *
16916537 TTCATT-CCAGTCTAAGATTAGACCAGACTGATGGTTGCAAAAGTAGGATCGACAACACGTAGAG
762 TTCATTCCCAGTCTAAGATCAGACCAGAC-GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGA-
* * * * *
16916601 GGGGACTCGATCGATCCCTGGCTTGCGCATACCCCGCCCCTCCGACCGGTTGAGCGCCCGCACG
825 GGGGACCCGATCGATCCCCGGCTTGCGCAT--CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
* * * *
16916665 CTCATTTCGTGGGTTAACTTAGGCACACGGAGTTCATTCCCATTCTAAGCATACGGAGTTCATTC
1 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * * * * * *
16916730 CCAGTCTAAGATCGGACCGGACCGAAGGTTACGGCAGCACATACTAGGCTTGGGCATGTGCTGGT
66 CCAGTCTAAGATCGGATCGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* **
16916795 GCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGATCGGCTACATT
131 GCCGCATTTTTCTTCGTCGGGGCACCAT---C---G--T---CGGAGAACCTGACCGGCGGCATT
* *
16916860 AGGGTTCCGGA-GATCGGGGGGCCGTGGGGGGTTTGCGCACATGATGTGCGATGGGTGCTGGTAC
185 GGGGTTCC-GACGATCGGGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* *
16916924 TTGGCCCTTATATTGGCCCCCTATCCCTCATAAAACCTCGAGAACTCACA-CCCCTTAAAAAGCA
247 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* * *
16916988 TTTGAGATTTTACGGGTTTGCTGCCAGTAGCCATTAAAGTTTTTGAAATGGGGACAC-TTTTTCA
312 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
16917052 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAA
377 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAAAAAAAA
* * * * * *
16917117 TACAAGGATCATGTCTACAAAGTTTGGGGTCAAAACTCCTTCCAAAAAAATTTTAAAAAATTCCA
441 -ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCG
* *
16917182 AACCGCAAAAAGTTTCAAAAATGGTGAAAAAAAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
505 AACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* * **
16917247 TGAAGGCTTAAGGGACCATTGTATGAATGTAGAAGCCATAAAAATGGCATTGGCACATAGAAATA
570 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATA
* * * * *
16917312 TGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGACTTGCGCAACCCATCCCTCTGG
635 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * *
16917377 CCGACGTAGTGCCTGCCCGCCCGTCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTT
700 CCGGCGTAGTGCC-GCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* ** * * *
16917442 CATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGTGGTAGCAGGATCGGCAGCATGCAGAGGG
764 CATTCCCAGTCTAAGATCAGACCAGA-CGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGG
* * * *
16917507 GAACCCGATCGATCCCCGGCTGGCGCATCCTGCCCCTCTGGCCGACTGAGCGCTCGCACG
828 G-ACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
* * * * * * *
16917567 CTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCTGTCTTAGCATACAGAGTTGATTC
1 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* *
16917632 CCAGTCTAAGATCGGATC-AGACCAAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGG
66 CCAGTCTAAGATCGGATCGA-ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * * *
16917696 TGCCGTAATTTTCTTCG-CTGGGGCACCATCACCGGAGCATCACCGGAGAACCTGACCGACGGCG
130 TGCCGCATTTTTCTTCGTC-GGGGCACCAT---C---G--T---CGGAGAACCTGACCGGCGGCA
* *
16917760 TTGGGGTTCCGGCGATCGAGGGGGCCGTGGGGGGTGTG-GCACATGATGTGTGATGGGTGCTGGT
183 TTGGGGTTCCGACGATCG-GGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* * *
16917824 ACTTGGCCCTTATAATGG-CCCCTATCCCTCATCAAACGTCG-GAGACTCATA--CCCTTAAAGA
245 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA-ACTCACACCCCCTTAAAGA
*
16917885 GCATTTGAGA-TTTACAGGTTTGCTGCCAGTAGCCATT-AAGTGTCTGGAATAGGGGACA-TTTT
309 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGGACACTTTT
*
16917947 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATTCCAAAAA
373 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCAAAAA
* * * *
16918012 AAATACAAGGATCACGTTTACCAGGTTTGGGGCCAAAACTTCTTCCGAAAAAATTTTAAAAAGT-
438 AAA-ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
*
16918076 CCG-ACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
502 CCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* *
16918140 ACCTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAGTGGCATGTAGAA
567 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAA
* * * *
16918205 ATATGAAGATGTACCTAAACCCACCTCCCACCCTATCAATCCATGGCTTGCGCATCCCGTCTCTC
632 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * * ** * *
16918270 TGGCCGACGTA-----G--T----GCCCGCCTGCTCATTTAATCGGTTGGCTTCGGCATACAGAG
697 TGGCCGGCGTAGTGCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * * *
16918324 TTCATTCCTAGTCTAAGATCAAACCAGACTGAGGGTTGTGGCAGCAAGATTGGCAGCACGCAGAA
762 TTCATTCCCAGTCTAAGATCAGACCAGAC-GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAG-A
** * * * *
16918389 GGGGACCCGATCGATCCCCATCTTGCGCATCCCGCCCCTCTGGCCGACTGAGTGCCCGTACC
825 GGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
* * * * * *
16918451 CTCATTTTGTGGGATGACTTAGGCATAAGGAATTCATTCCCAGTCTAAGCATAAGGAGTTCATTC
1 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * * *
16918516 CCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGATGAGTTCGGGCATGTGCTGGT
66 CCAGTCTAAGATCGGATCGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * *
16918581 GCCGCACTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCAGAGGCATT
131 GCCGCATTTTTCTTCGTCGGGG------CA-C----CATCGTCGGAGAACCTGACCGGCGGCATT
* * *
16918646 GGGGTTCCGGCGATCGGGGGGGCCAGGGCGGTGTGCGCACATGATGTGCTATGGGTGCTGGTACT
185 GGGGTTCCGACGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* *
16918711 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAAAGCAT
248 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* *
16918776 TTGAGATTTTACAGGTTTGCTGCCAGTAGCGAGTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
313 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
*
16918841 ATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAT
378 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAAAAAAAA-
* ** * * *
16918906 ACAAGGATCATGTCTACCAAGTTTCAGGTCAAAACTCTTTCCAAAAAAAATTTTAAAAAATCCCG
441 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-GAAAAAATTTTAAAAAATCCCG
* ** *
16918971 AATCGCAAAAAGTTTTGAAAATGGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
505 AACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* * *
16919036 TGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTTGCATGGAGAAATA
570 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATA
* * *
16919101 TGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCATCTCTCTGG
635 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * *
16919166 CCGGCGTAGTG-C-CC-GCCCACCTGCCCGCTCGTTTCGTCGGTTAGCTTAGGCATACGGAGTTC
700 CCGGCGTAGTGCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* ** * *** * * **
16919228 ATTCCCAATCTAAGATCAGACCAGACTGACAGATGCAAAAGCAGGATCGACAACACATAGAGGGG
765 ATTCCCAGTCTAAGATCAGACCAGAC-GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGA-GGG
* ** * *
16919293 GACTCGATCGAT-CCCGGCTTGCGCATCGTGCCCCTCTGGTCGGCTGAGCGCCCGCACA
828 GACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
* *
16919351 CTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTC
1 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * * * * * *
16919416 CCAGTCTAAGATCAGACCAAACCAAGGGTTACGGCAGCACATGCTAGGCTGGGGCATGT-CTGGT
66 CCAGTCTAAGATCGGATCGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * *
16919480 GCTGCATTTTTCTTCGTCGAGGCACCATCGTCGGAGTATCGTCGGAGAACCTGACCGTCGGCATT
131 GCCGCATTTTTCTTCGTCG-GG--GCA-C--C-----ATCGTCGGAGAACCTGACCGGCGGCATT
* * * * * *
16919545 GGGGTTCC-AGTGAT-AGGGCGCCGGGGGGTGGGCACACATGATGTGCGATGGGTGCTGGTATTT
185 GGGGTTCCGA-CGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* * * * *
16919608 GGCCCTTATACTGGCCCCCTATCCCTCATCAAACCTCAAGATCCCACACCCTCTTAAAGAGCATT
249 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* * *
16919673 TGAGATTTTTCAGGTTTGCTGCCAGTAGCAATTAAAGAGTCTGAAATGGGGACACTTTTTTCAAA
314 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
*
16919738 TGGTCACAAAATCTTGAACACTTCGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAAAAAAAATA
379 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-AATTTTTTGTGCATGCCAAAAAAAA-A
** * *
16919803 CAAGGATCACGTCTACCAAGTTTGGGAACAAAACTCCCTCCAAAAAAATTTTAAAAAATCCCGAA
442 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAA
* * * * *
16919868 CCGCAAAAATTTTCAAAAATTGTGAAAAATAGTAAACTAGTCGTCTTGCCATGAAACTTCACCTG
507 CCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
16919933 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATG
572 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATG
* * * *
16919998 AAGACGTGCCTAAACCCACCTACCACCCTATCGATCCATGACTTGCGCATCCCGTCTCTCTGCCC
637 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* *
16920063 AGCGTAGTG-C-CCT-CCCGCCCGCACGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
702 GGCGTAGTGCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * *
16920125 TCCCAGTCTAAGATCCGACCAGACCGAGGGTTGCGGCTGCAGGATCGGCAGCACGGAGAGGGGGA
767 TCCCAGTCTAAGATCAGACCAGA-CGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGA-GGGGA
* * * *
16920190 CCCGATCGATCCTCGACTTGCGCATCCGGCCCCTCTGGCCGGTTGAGCGCCCGCACG
830 CCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
* * *
16920247 CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCATTCAAAGCATACGGAGTTCATTC
1 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * * *
16920312 CCAGTCTTAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGCCTCGGACATGTGCTGGT
66 CCAGTCTAAGATCGGATCGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
16920377 GCCGCA-TTTTCTTCGTCGGGGCACCATCGCCGGAGCGTAACCGGAGAACCTGACCGGCGGCATT
131 GCCGCATTTTTCTTCGTCGGGGCACCAT--------CGT---CGGAGAACCTGACCGGCGGCATT
*
16920441 GGGGTTCCGACGATCGGGGGGGCCGTGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTAC
185 GGGGTTCCGACGATC-GGGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
*
16920506 TTGGCCCTTATATTGGCCCCCTATCCCTCGTCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCA
247 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
16920570 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
312 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* *
16920635 AATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTCTTGTGCATTCCAAAAAAAA
377 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT-TTGTGCATGCCAAAAAAAA
* * * * * *
16920700 TAAAAGGATCACTTTTACCAAGTTTAGGGCCAAAACTCCTTCCGACAAAATTTTAAAAAATCCTG
441 -ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCG
* * * *
16920765 AACCGCAAAATGTTTCAAAAATCATGAAAAATAGAAAACGTGTCGTCTTGCTATGAAACTTCACG
505 AACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* * * *
16920830 TAAAGGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGGTAGTGGCATGTAGAAATA
570 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATA
* *
16920895 TGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGG
635 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * * * *
16920960 TCGACGTAGTGCCCGCCTGCCCGCCCACCCCCTTGTTTCATCGGTTGGCTTAGGCATACGGAGTT
700 CCGGCGTAGTG-CCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * **
16921025 CATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGTAGGATCGGCAGCACATAGAGGG
764 CATTCCCAGTCTAAGATCAGACCAGA-CGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGA-GG
** * * * * * *
16921090 GGACCCGGCCGATCCCCGTCTTGCACGTCCCGCCCCTCTGGCTGGCTGGGTGCCCGCACG
827 GGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
* * * *
16921150 CTCGTTTTGTGGGTTGACTTAGGCATATGGAATTCATTCCCAGTCTAAGCATACAGAGTTCATTC
1 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * * * *
16921215 CCAGTCTAAGATCGGATTGGACCGAGGGTTGCGGCAGCACGTGCTAGGTTCGGGCATGTGCTGGT
66 CCAGTCTAAGATCGGATCGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
** *
16921280 GCCGCATTTTTCTTCGTTTGGGCACCATCACCAGAGCATTGTCGGAGAACCTGACCGACGGCATT
131 GCCGCATTTTTCTTCGTCGGGGCACCAT--------C---GTCGGAGAACCTGACCGGCGGCATT
* * ** *
16921345 AGGGTTCTGGTGAACGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
185 GGGGTTCCGACGATC-GGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* *
16921410 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGATAACTCACACCCCCTTAAAGAGC--
248 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* * *
16921473 -----A-TTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTGAA
313 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
*
16921532 ATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATGTTTTTGTGCATG-CAAACAAAAA
378 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTGTGCATGCCAAA-AAAAA
* *
16921596 TACAGGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCAG
441 -ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCG
* * * *
16921661 AACCGCAAAAAGTTTCGATAATGGTGAAAAATAGAAAACGAATCGTCTTGCCATGAAACTTCACG
505 AACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* * *
16921726 TGAAGGCTTAAGGGACCATTGTATTAATTTACAAGCCA-ATAAAATGGCATTGGCACGCAGAAAT
570 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA-AAAATGGCATTGGCATGTAGAAAT
* * * * *
16921790 ATGAAGATGTGCCTAAACACACCTACCACCCTGTCGATCCACGACTTGCGTATCCCATCTCTCTG
634 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * * **
16921855 GCCGACGTACTGTCCG--T--CCGTCCG-CC-CTCGTTTCGTCGGTTGGCTTAGGCATATAGAGT
699 GCCGGCGTAGTG-CCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
** * * *
16921914 TCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGATAGTAGGATCAGCAGCATGCAGAGG
763 TCATTCCCAGTCTAAGATCAGACCAGAC-GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGG
* * *
16921979 GGAACCCGGTCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACG
827 GG-ACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
* * * ** * *
16922040 TTGGTTTCATGGGTTGACTTAGGCATACAAAGTTCATTCCCAGCCTAACCATACGGAGTTCATTC
1 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * * * *
16922105 CCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGTAGCACATGCTGGGCTTGGGCATGTGCTGGT
66 CCAGTCTAAGATCGGATCGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* *
16922170 GCCGCATTTTTCTTCATCGAGGCACCATCATCGGAGCATCGTCGGAGAACCTGACCGGCGGCATT
131 GCCGCATTTTTCTTCGTCG-GG-----GCA-C----CATCGTCGGAGAACCTGACCGGCGGCATT
**
16922235 GGGGTTCCGGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
185 GGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
16922300 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
249 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
*
16922365 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAGGTGTCTGAAATGGGGAC-CTTTTCTTCAA
314 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT-TTCAA
* *
16922429 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGATGAAATTTTTTGTGCATGCCAATAAAAAT
378 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-AATTTTTTGTGCATGCCAA-AAAAAA
* * * ** ** * **
16922494 ACAAGGATCACATC-AGCAAAGCTTGGGGTTAAAACTCCTTTTGAGAAAATTTTAAAAAATCTTG
441 ACAAGGATCACGTCTA-CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCG
* * * * * *
16922558 AACCGTAAAAA-TTTTAGAAAATCATGAAAAATAAAAAATGAGTCGTCATGCCATGAAACTTCAC
505 AACCGCAAAAAGTTTCA-AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* *
16922622 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGCATAAAAATGGCATTGGCATGCAGAAAT
569 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAAT
* * *
16922687 ATGAAGGTGTGCCTAAACCCACATACCACCCTATCGATCCACGGCTTGCGCATCCCGTCCCTCTG
634 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * * *
16922752 GCCGACGTAGTGCCGACCT----GCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATATGCAGT
699 GCCGGCGTAGTGCCG-CCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * * *
16922813 TCATTCCCAGTCTAAGATC-G---A-A-TAGGATT---G-AG--GGTTTCAGCAGCATGCAGAGG
763 TCATTCCCAGTCTAAGATCAGACCAGACGAGGGTTGCGGCAGCAGG-ATCGGCAGCACGCAGA-G
* * *
16922866 GGGACCCAATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAACGCCTGCACG
826 GGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
*
16922927 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGCTCATTC
1 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * * ** * * * *
16922992 CCAGTCTAAGAT-TGAACCAGACAAAGGGTTACAGTAGCACATGCTGGGCTCGGGCATGTGTTGG
66 CCAGTCTAAGATCGGATCGA-ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * * **
16923056 TGTCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAAGCTGACCGACAACAT
130 TGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAG-A--A-C-------CTGACCGGCGGCAT
* *
16923121 TGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGGTGTGCGATGGGTGCTGGTACTT
184 TGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* *
16923186 GACCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
249 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* * *
16923251 TGAGATTTTACAGGTTTGCTGCCAATAGCAATTAAAGTGTCCGAAATGGGGACACTTTTTTCAAA
314 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* *
16923316 TGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAAAAAAAATA
379 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAAAAAAAA-A
* *
16923381 CAAGGATCACGTCTACCAAGTTTGGGCCCAAAACTCCTT-CG--AAAATTTATAAAAAATCCTGA
442 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT-TAAAAAATCCCGA
* *
16923443 ACCGCAAAAAGTTTTCAAAAATCGTGAAAAA-AGAAAACGAGTC--ATTGCCATGAAACTCCACG
506 ACCGCAAAAAG-TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* *
16923505 TGAAGGCTTAAGGGACCATTTTATGAA-TTACAAGCCAT-AAAATGGCAATTGGCATGCAGAAAT
570 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC-ATTGGCATGTAGAAAT
16923568 ATGAAGATG-GCCTAAACCCACCTACCA-CCTATCGAT-CA-GGCTTGCGCAT-CC-TCTCTC--
634 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * ** * * *
16923625 G--GTC-T-G-GCCGCCT-CTCGTCTAGCCCACGTTTGTTT-GTCGGTTGGCTTAGGCATACGAA
699 GCCGGCGTAGTGCCGCCTGCCCG-CCCG-CC-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
** * * * *
16923683 GCTTCATTCCCAGTCTAAGATTGGACGA-AC-AAGGTTGCGGAAGCA-GATC-GCAAGCAC-AAG
761 G-TTCATTCCCAGTCTAAGATCAGACCAGACGAGGGTTGCGGCAGCAGGATCGGC-AGCACGCAG
* * * * * *
16923743 AAGGGACCCG-GCGAT--CCTGCTTG-GCATCCTGCCCCTCTGGCCGGCTGAGTG-CCGGACG
824 AGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
* ** * *
16923801 CTCATTTCGTGGGTTGACTTA-GCATACGGAGTTCATTCATAGTCTAAGCACACGAAGTTCATTC
1 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * * * * * *
16923865 CCAGTCTAAGGTCAGA-CCAGATCAAGGGTTGTGGCAGCACATGCTGGGCTCAGGCATGTGCTGG
66 CCAGTCTAAGATCGGATCGA-ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * *
16923929 TGCTGCATTTTTCTTGGACGGGGCACCATCGCCAGAGCATCGTCGGAGAACCTGACCGGCGGCAT
130 TGCCGCATTTTTCTTCGTCGGGG---CA----C----CATCGTCGGAGAACCTGACCGGCGGCAT
* * *
16923994 TGGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGCTACT
184 TGGGGTTCCGACGA-TCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
16924059 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
248 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* *
16924124 TTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGAGGACACTTTTTTCAA
313 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* * ** * *
16924189 ATGGTCACAAAATCTTGTACACTTCGACTTGTTAGCTGAAATTTTTCCTACATGCCAAAAAAATT
378 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-AATTTTTTGTGCATGCCAAAAAAA-A
* * * *
16924254 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAGACTACATGCGAAAAAATTTTAAAAAATCCCGA
441 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGA
** * * * * *
16924319 ACCGCAAAAAGTTTTGAATATCATGAAAAATAGAAAACGAGTCATCTTGCCTTGAAACTTCACAT
506 ACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
*
16924384 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGCATGTAGAAATAT
571 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATAT
* **
16924449 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCCAGC
636 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
** *
16924514 CGGCGTAGTGCCCGCCCCCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
701 CGGCGTAGTG-CCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * * * *
16924579 ATTCCCAGTCTATGATTAAACCAGACCGACGCTTGCGGCAGCA
765 ATTCCCAGTCTAAGATCAGACCAGA-CGAGGGTTGCGGCAGCA
16924622 CATGCTGGGC
Statistics
Matches: 15906, Mismatches: 2174, Indels: 1598
0.81 0.11 0.08
Matches are distributed among these distances:
867 3 0.00
868 4 0.00
869 1 0.00
870 2 0.00
871 4 0.00
872 23 0.00
873 158 0.01
874 294 0.02
875 54 0.00
876 57 0.00
877 25 0.00
878 50 0.00
879 214 0.01
880 191 0.01
881 384 0.02
882 219 0.01
883 70 0.00
884 442 0.03
885 76 0.00
886 271 0.02
887 281 0.02
888 587 0.04
889 503 0.03
890 1362 0.09
891 1104 0.07
892 732 0.05
893 294 0.02
894 25 0.00
895 382 0.02
896 1236 0.08
897 618 0.04
898 426 0.03
899 1299 0.08
900 449 0.03
901 1068 0.07
902 734 0.05
903 894 0.06
904 367 0.02
905 17 0.00
906 10 0.00
907 10 0.00
908 12 0.00
909 6 0.00
910 1 0.00
912 7 0.00
913 4 0.00
915 2 0.00
916 3 0.00
917 1 0.00
918 11 0.00
919 24 0.00
920 15 0.00
921 8 0.00
922 2 0.00
923 1 0.00
924 12 0.00
925 10 0.00
926 6 0.00
927 8 0.00
928 6 0.00
930 3 0.00
931 3 0.00
933 6 0.00
934 6 0.00
935 4 0.00
937 6 0.00
938 3 0.00
939 4 0.00
940 2 0.00
941 3 0.00
942 6 0.00
943 2 0.00
944 4 0.00
945 4 0.00
946 3 0.00
947 1 0.00
948 1 0.00
949 1 0.00
950 8 0.00
951 8 0.00
952 1 0.00
953 2 0.00
954 11 0.00
955 7 0.00
957 3 0.00
960 2 0.00
961 2 0.00
962 5 0.00
963 25 0.00
964 10 0.00
965 4 0.00
966 4 0.00
967 14 0.00
968 2 0.00
972 4 0.00
974 2 0.00
975 6 0.00
976 5 0.00
978 5 0.00
979 7 0.00
980 14 0.00
981 8 0.00
982 2 0.00
983 4 0.00
984 15 0.00
985 8 0.00
986 6 0.00
988 3 0.00
990 2 0.00
991 8 0.00
992 1 0.00
993 1 0.00
994 6 0.00
995 2 0.00
997 3 0.00
999 5 0.00
1000 8 0.00
1001 11 0.00
1002 4 0.00
1003 2 0.00
1004 8 0.00
1005 12 0.00
1006 6 0.00
1007 6 0.00
1009 5 0.00
1010 6 0.00
1011 2 0.00
1013 3 0.00
1017 1 0.00
1018 11 0.00
1019 3 0.00
1021 2 0.00
1022 3 0.00
1023 1 0.00
1024 182 0.01
1025 259 0.02
1026 210 0.01
1027 393 0.02
1028 230 0.01
1029 157 0.01
1030 191 0.01
1031 210 0.01
1032 234 0.01
1033 165 0.01
1034 115 0.01
1035 158 0.01
1036 131 0.01
1037 73 0.00
1038 122 0.01
1039 145 0.01
1040 195 0.01
1041 113 0.01
1042 165 0.01
1043 155 0.01
1044 141 0.01
1045 187 0.01
1046 155 0.01
1047 115 0.01
1048 85 0.01
1049 75 0.00
1050 71 0.00
1051 92 0.01
1052 188 0.01
1053 53 0.00
1054 29 0.00
1055 224 0.01
1056 61 0.00
1057 48 0.00
1058 57 0.00
1059 131 0.01
1060 218 0.01
1061 78 0.00
1062 71 0.00
1063 50 0.00
1064 62 0.00
1065 59 0.00
1066 58 0.00
1067 77 0.00
1068 106 0.01
1069 63 0.00
1070 30 0.00
1071 45 0.00
1072 248 0.02
1073 18 0.00
1074 34 0.00
1075 31 0.00
1076 13 0.00
1077 16 0.00
1078 55 0.00
1079 49 0.00
1080 27 0.00
1081 30 0.00
1082 30 0.00
1083 16 0.00
1084 12 0.00
1085 8 0.00
1086 2 0.00
1087 3 0.00
1088 51 0.00
1089 11 0.00
1090 1 0.00
1091 11 0.00
1092 3 0.00
1093 7 0.00
1094 11 0.00
1095 38 0.00
1096 38 0.00
1097 19 0.00
1098 14 0.00
1099 2 0.00
1100 2 0.00
1103 6 0.00
1104 5 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (886 bp):
CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
CCAGTCTAAGATCGGATCGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
GCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGAC
GATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCAAAAAAAAACAAGGATCACGTCT
ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTC
AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAA
CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCGCC
TGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
CAGACCAGACGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGACCCGATCGATCCCCGG
CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
Found at i:16908477 original size:26 final size:26
Alignment explanation
Indices: 16908441--16908493 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16908431 GTTAACTTAG
*
16908441 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16908467 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16908493 G
1 G
16908494 ACCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16909365 original size:26 final size:26
Alignment explanation
Indices: 16909329--16909381 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16909319 GTTGACTTAG
* *
16909329 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCACTCCCAGTCTAA
*
16909355 GCATACAGAGTTCACTCCTAGTCTAA
1 GCATACAGAGTTCACTCCCAGTCTAA
16909381 G
1 G
16909382 ATCGAATCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCACTCCCAGTCTAA
Found at i:16910657 original size:26 final size:26
Alignment explanation
Indices: 16910618--16910670 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16910608 GTTCACTTAG
16910618 GCATAAGGAATTCATTCCCAGTCTAA
1 GCATAAGGAATTCATTCCCAGTCTAA
* *
16910644 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAATTCATTCCCAGTCTAA
16910670 G
1 G
16910671 ATCGGTACGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATAAGGAATTCATTCCCAGTCTAA
Found at i:16913135 original size:26 final size:26
Alignment explanation
Indices: 16913106--16913158 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16913096 GTTCACTTAG
*
16913106 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16913132 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16913158 G
1 G
16913159 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16914038 original size:26 final size:26
Alignment explanation
Indices: 16914008--16914060 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16913998 GTTGACTTAG
*
16914008 GCATAC-GAAGTTCATTCCCTGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
*
16914034 GCATACAGAGTTGATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16914060 G
1 G
16914061 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16914937 original size:26 final size:26
Alignment explanation
Indices: 16914898--16914950 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16914888 GTTGACTTAG
16914898 GCATAAGGAATTCATTCCCAGTCTAA
1 GCATAAGGAATTCATTCCCAGTCTAA
* * *
16914924 GCATACGGAGTTCATTCCCGGTCTAA
1 GCATAAGGAATTCATTCCCAGTCTAA
16914950 G
1 G
16914951 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATAAGGAATTCATTCCCAGTCTAA
Found at i:16915827 original size:26 final size:26
Alignment explanation
Indices: 16915790--16915842 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16915780 GTTGACTTAG
*
16915790 GCATACGAAGTTCATTCCCTGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
16915816 GCATAC-AGAGTTGATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
16915842 G
1 G
16915843 ATTGGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16917626 original size:26 final size:27
Alignment explanation
Indices: 16917584--16917638 Score: 69
Period size: 26 Copynumber: 2.1 Consensus size: 27
16917574 CATGGGTTGA
*
16917584 CTTAGGCATACGAAGTTCATTCCCTGT
1 CTTAGGCATACGAAGTTCATTCCCAGT
*
16917611 CTTA-GCATAC-AGAGTTGATTCCCAGT
1 CTTAGGCATACGA-AGTTCATTCCCAGT
16917637 CT
1 CT
16917639 AAGATCGGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 1 0.04
26 20 0.80
27 4 0.16
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.33
Consensus pattern (27 bp):
CTTAGGCATACGAAGTTCATTCCCAGT
Found at i:16918512 original size:26 final size:26
Alignment explanation
Indices: 16918473--16918525 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16918463 GATGACTTAG
16918473 GCATAAGGAATTCATTCCCAGTCTAA
1 GCATAAGGAATTCATTCCCAGTCTAA
*
16918499 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAATTCATTCCCAGTCTAA
16918525 G
1 G
16918526 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATAAGGAATTCATTCCCAGTCTAA
Found at i:16919409 original size:26 final size:26
Alignment explanation
Indices: 16919373--16919425 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16919363 GTTGACTTAG
16919373 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
16919399 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
16919425 G
1 G
16919426 ATCAGACCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:16919809 original size:896 final size:897
Alignment explanation
Indices: 16910775--16924621 Score: 18069
Period size: 896 Copynumber: 15.5 Consensus size: 897
16910765 GTCGGGGTTC
* * *
16910775 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-AATTGTTTTGTACATACCAACAA
1 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATT-TTTTGTGCATGCCAAAAA
* * ** *
16910839 ACATACAAGGATCACGTCTACCAGGTTTGGGAACAAAACTCCTTCTGAAAAAATTTTAAAAAATC
65 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
* ** *
16910904 CCGAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTC
130 CCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* *
16910969 ACCTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCATAAAAATGGCATTGGCATGTAGAA
195 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAA
*
16911034 ATATGAAGACGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
260 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* *
16911099 TGGCCAGA-GTAGTGCCCG--C-CC-GCCCGCTCATTTCGTCGGTTGGCTTAGGCATACAGAGTT
325 TGGCC-GACGTAGTGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * * *
16911159 CATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCATGCAAAGGG
389 CATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGG
** * * * * * * *
16911224 CAACCCGACCGATCCTCGGCTGGCGCATGCCGCCCCTCTGGCCGACTGAGCGCTCGCACGCTCAT
454 GGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
* * * * * * *
16911289 TTTGTGGGTTGACTTAGGCATATGAAGTTCATTCCCTGTCTAAGCATACAGAGTTGATTCCCAAT
519 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* * * * **
16911354 CTATGATCGGATTGCACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCAT
584 CTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
* * * *
16911419 AATTTTCTTCG-CTGGGGCACCATCACCGGAGCATCGTCGAAGAACCTGACCGACGGCGTTGGGG
649 ATTTTTCTTCGTC-GGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGG
* * *
16911483 TTCCGGTGATCGGGGGGGCTGGGGGTTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
713 TTCCGGCGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* * *
16911548 CTTATAAATT-G-CCCCTATCCCTCATCAAACGTGGAGAACTCATACCGCCTTAAAGAGCATTTG
777 CTTAT--ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC-CCTTAAAGAGCATTTG
* *
16911611 ACATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AGAATAGGGACACTTTTTT
839 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA-AATGGGGACACTTTTTT
* * * *
16911670 CAAATCGTGAC-AAATCTTGTACACTTGGAATTTTTAGCT-AAATTGTTTTGTGCATGCC-AAAA
1 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATT-TTTTGTGCATGCCAAAAA
* * *
16911732 AAATACAAGGATCACGTCTACCAGGTTTGGGGCCAAAACTTCTTCCGAAAAAATTTTAAAAAGTC
65 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
* *
16911797 CCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
130 CCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * **
16911862 ACGTGAAGGCTTAAGGGACTATTGTATGAATGTACAAGCCATAAAAATGGCATTGGCACATAGAA
195 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAA
* *
16911927 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCCCTC
260 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* *
16911992 TGGCCGACGTAGTGCCTGCTCGCCCGTCTGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
325 TGGCCGACGTAGTG-C--C-CGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * * *
16912057 GTTCATTCCCAGTATAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGTAGCATGCAGA
386 GTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGA
* * * * * * * *
16912122 GGGGAACCTGGTCGACCCCCGGCTGGCGCATACCGCCCCTCTGGCCGACTGAGCGCTCGCA-GAC
451 GGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG-C
* * * * * *
16912186 TCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCTGTCTAAGCATGCAGAGTTGACTCC
515 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
*
16912251 CAGTCTAAGATCGGATCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
580 CAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * * *
16912316 CCGTAATTTTCTTCGTCGGGGCACCATTACCGGAGCATCGTCGGAGAACCTGACCGGCGGCGTTG
645 CCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTG
* ** * *
16912381 GGGTTCCGGTGATCAAGGGGCTGGGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTG
710 GGGTTCCGGCGATCGGGGGGC-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* * *
16912446 GCCCTTATAAATGG-CCCCTATCCCTCATCAAACGTGGAGAACTCACACCGCCTTAAAGAGCATT
774 GCCCTTAT-ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC-CCTTAAAGAGCATT
* *
16912510 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAATAGGGACACTTTTTT
837 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* *
16912571 CAAATGGTCACAAAATCTTGTACACTTGGAGTTTTTAGCTG-AATTGTTTTGTGCATGCCAACAA
1 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATT-TTTTGTGCATGCCAAAAA
* * * **
16912635 ACATACAAGGATCACGTCTACCAGGTTTAGGAACAAAACTCCTTCCGAAAAAATTTTAAAAAATC
65 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
* *
16912700 TCGAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
130 CCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
*
16912765 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCATAAAAATGGCATTGGCATGTAGAA
195 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAA
*
16912830 ATATGAAGACGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
260 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* *
16912895 TGGCCAACGTAGTGCCCGCCCGGCC-GCCCGCTCGTTTCGTCGGTTGGCTTAGTCATACGGAGTT
325 TGGCCGACGTAGTGCCCGCCC-GCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * ** * *
16912959 CATTCCCAGTCTAAGATCTGACCAGACCGAGGGTTCCGATAGCAGGATCGACAGCACGGAGAGGG
389 CATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGG
* * * * * * * * *
16913024 GGACCCGGTCGATCCTCGACTTGCGCATCCCACCCCTCTGACCGGTTGAACGCCCGTACGCTCAT
454 GGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
* * *
16913089 TTTGTGGGTTCACTTAGGCATACGGAGTTCATTCCCATTCTAAGCATACGGAGTTCATTCCCAGT
519 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* * * * * **
16913154 CTAAGATCGGACCGGACCGAAGGTTACGGCAGCACATACTGGGCTTGGGCATGTGCTGGTGCTAC
584 CTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
* * * *
16913219 ATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATC-ACTGGAGAACCTGACCGGCTGCATTAGGG
649 ATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTC-GGAGAACCTGACCGGCGGCATTGGGG
16913283 TTCCGGCGATCGGAGGGGCCATGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
713 TTCCGGCGATCGG-GGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
*
16913348 CCCTTATATTGGCCCCCTATCCCTCGTCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGA
775 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGA
* * * *
16913413 GATTTTACGGGTTTACTGCCAGTAGCCATTAAAGTTTCTAAAATGGGGACAC-TTTTT
840 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * * *
16913470 CAAATGATCACAAAATCTTGTACACTTCGAGTTTGTAGCTGAATTTTTTTATGCATGCCAAAAAA
1 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAAAAAA
* *
16913535 AATACAAGGATCATGTCTACCAAGTTTGGGGTCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
66 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
*
16913600 CGAACCGCAAAAAGTTTCAAAAATGGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
131 CGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * **
16913665 TGTGAAGGCTTAAGGGACCATTGTATGAATGTACAAGCCATAAAAATGGCATTGGCACATAGAAA
196 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAA
* * *
16913730 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCAACCCATC-CTCT
261 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * *
16913794 GGCCGACGTAGTGCCTGCCCGCCCGTCCGCCTGCTCGTTTCATCGGTTGGCTTAGGCATACGGAG
326 GGCCGACGTAGTGCCCGCCCG-CC-T--GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * * *
16913859 TTCATTCCCAGTCTAAGAACTGACC-GAACCGAGGGTTGTGGCAGCAGGATCGGCAGCATGCAGA
387 TTCATTCCCAGTCTAAGATCAGACCAG-ACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGA
** * * * *
16913923 GGGCAACCCGACCGATCCCCGG-TTGGTGCATCCCGCCCCTCTGGCCGACTGAGCGCTCGCACGC
451 GGGGGACCCGATCGATCCCCGGCTT-GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
* * * * * *
16913987 TCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCTGTCTAAGCATACAGAGTTGATTCC
515 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * *
16914052 CAGTCTAAGATCGGATCAGACCGAGGGTTGCAGCAGCACATACTGGGCTCGGGCATGTGCTGGTG
580 CAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * * * ** * **
16914117 CCGCAATTTTCTTCG-CTAGGGCACCATCACCAGAGTATCACCGGAGAACCTGACCGACGGTGTT
645 CCGCATTTTTCTTCGTC-GGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGGCGGCATT
** ** *
16914181 GGGGTTCCGATGATCGAGGGGGTTGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTT
709 GGGGTTCCGGCGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* * * *
16914246 GGCCCTTATAAATGG-CCCCTATCCCTCATCAAACGTGGAGAACTCATACCGCCTTAAAGAGCAT
773 GGCCCTTAT-ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC-CCTTAAAGAGCAT
* *
16914310 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAATAGGGACACTTTTTT
836 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* *
16914372 CAAATCGTCAC-AAATCTTGTACACTTGGAGTTTTTAGCTG-AATTGTTTTGTGCATGCCAAAAA
1 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATT-TTTTGTGCATGCCAAAAA
* * * *
16914435 AAATACAAGGATCACGTCTACCAGGTTTGGGGCCAAAACTTCTTTCGAAAAAATTTTAAAAAGTC
65 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
* *
16914500 CCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
130 CCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* *
16914565 ACCTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAGTGGCATGTAGAA
195 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAA
* * *
16914630 ATATGAAGATGTACCTAAACCCACCTACCACCCGT-GCAATCCACGGCTTGCGCATCCCGTCTCT
260 ATATGAAGATGTGCCTAAACCCACCTACCACCC-TATCGATCCACGGCTTGCGCATCCCGTCTCT
* * **
16914694 CTGGCCGGCGTAGT----G--C-CC-GCCCGCTCATTTAATCGGTTGGCTTAGGCATACGGAGTT
324 CTGGCCGACGTAGTGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * * *
16914751 CATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGTAGCTGGATTGGCAGCACGCAGAAGG
389 CATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGG
* ** * * * *
16914816 GGACCCGACCGATCCCCATCTTGCGCATCCCCCCCCTCTGGCCGGCTGAGTGCCCGTACCCTCGT
454 GGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
* * * *
16914881 TTTGTGGGTTGACTTAGGCATAAGGAATTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCGGT
519 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* * * * *
16914946 CTAAGATCGGATCGGACGGAGGGTTGCGGCAGTACATGATGGGTTCGGGCATGTGTTGGTGCCGC
584 CTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
* * * * *
16915011 ACTTTTCTTCGTCGGGGCACCATCACCGGACCATCGTCGGAGAACCTAACCAGAGGCATTGGGGT
649 ATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGT
* *
16915076 TCCGACGATCGGGGGGGCCAGGGCGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
714 TCCGGCGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
*
16915141 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAG
777 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAG
* *
16915206 ATTTTACAGGTTTGCTGCCAGTAGCGAGTAAAGTGTCTGAAATGGGGACACTTTTTT
841 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * * *
16915263 GAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAA
1 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAAAAAA
* * * *
16915328 AATACAAGGATCATG-CTTACCAAGTTTCGGGTCAAAACTCCTTCCAAAAAAATTTTAAAAAATC
66 AATACAAGGATCACGTC-TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
* * ** * **
16915392 CCGAACCGTAAAAGGTTTTGAAAATGGTGAAAAATAGAAAACGAGTCGTCTTTTCATGAAACTTC
130 CCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * ***
16915457 ATGTGAAGGCTTAAGGGACCATTGTATGAATGTACAAGCCATAAAAATGGCATTGGCACACAGAA
195 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAA
* * *
16915522 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGCATCCCATCCCTC
260 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * * * *
16915587 TGGCCGGCGTAGTGCCTGCCCGCCCGTCCGCCCGCTCATTTTGTCCGTTGGCTTAGGCATACGGA
325 TGGCCGACGTAGTGCCCGCCCG-CC-T--GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * *
16915652 GTTCATTCCCAGTCTATGATCGGACCGGACTGAGGGTTGTGGCAGC---AT-----GCA-G-AGA
386 GTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGA
* * * * *
16915707 --GGAACCCGACCGATCCCCGGCTGGCGCATCCCGCCCCTCTGGCCGACTGAGCGCTCGCACGCT
451 GGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
* * * *
16915770 CGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCTGTCTAAGCATACAGAGTTGATTCCC
516 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
* * * *
16915835 AGTCTAAGATTGGATCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGT
581 AGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
** * * * * * * ***
16915900 CATAATTTTCTTCGTCGGGGAACCATCATCGGAGCATC-ACAGAAGAACCTGATCGGCGATGTTG
646 CGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTC-GGAGAACCTGACCGGCGGCATTG
* ** ** *
16915964 GGGTTTCGATGATCAGGGGGGCTAGGGGGTGTGCGCACATGATGTGCGATTGGTGCTGGTACTTG
710 GGGTTCCGGCGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* * * *
16916029 GCCCTTAGAAATT-G-CCCCTATCCCTCATCAAACATGGGGAACTCACACCGCCTTAAAGAGCAT
774 GCCCTT--ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC-CCTTAAAGAGCAT
* *
16916092 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAATAGGGACACTTTTTT
836 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * *
16916154 CAAATGGTCACAAAATCTTGTACACTTGGAGTTTTTAGCTG-AATTGTTTTGTGCATGCGAACAA
1 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATT-TTTTGTGCATGCCAAAAA
* ** *
16916218 AAATACAAGGATCACGTCTACCAGGTTTGGGAACAAAACTCCTTCCGATAAAATTTTAAAAAATC
65 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
* ** *
16916283 CCGAACCGTAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
130 CCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * *
16916348 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAAGCCATAAAAATGGCATT-ACATGGAGA
195 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTA-CAAGCCATAAAAATGGCATTGGCATGTAGA
* *
16916412 AATATGAAGATGTGCC-AAAACCACCTACCACCCTATCGAT-CACGGCTTGTGCAT-CCGATCTC
259 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG-TCTC
* * * * *
16916474 TCTGGCAGGCGTAGTGCCC-CGCC-ACTGCCCGCTCGATTCGTCGGTTAGCTTAGGCATACGGAG
323 TCTGGCCGACGTAGTGCCCGC-CCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * *** * * * *
16916537 TTCATT-CCAGTCTAAGATTAGACCAGACTGATGGTTGCAAAAGTAGGATCGACAACACGTAGAG
387 TTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAG
* * * * *
16916601 GGGGACTCGATCGATCCCTGGCTTGCGCATACCCCGCCCCTCCGACCGGTTGAGCGCCCGCACGC
452 GGGGACCCGATCGATCCCCGGCTTGCGCAT--CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
* * * *
16916666 TCATTTCGTGGGTTAACTTAGGCACACGGAGTTCATTCCCATTCTAAGCATACGGAGTTCATTCC
515 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * * * * *
16916731 CAGTCTAAGATCGGACCGGACCGAAGGTTACGGCAGCACATACTAGGCTTGGGCATGTGCTGGTG
580 CAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* ** * ** *
16916796 CCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGATCGGCTACATTA
645 CCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTG
* *
16916861 GGGTTCCGGAGATCGGGGGGCCGTGGGGGGTTTGCGCACATGATGTGCGATGGGTGCTGGTACTT
710 GGGTTCCGGCGATCGGGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* *
16916926 GGCCCTTATATTGGCCCCCTATCCCTCATAAAACCTCGAGAACTCACACCCCTTAAAAAGCATTT
773 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTT
* * *
16916991 GAGATTTTACGGGTTTGCTGCCAGTAGCCATTAAAGTTTTTGAAATGGGGACAC-TTTTT
838 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
*
16917050 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAA
1 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAAAAAA
* * * * *
16917115 AATACAAGGATCATGTCTACAAAGTTTGGGGTCAAAACTCCTTCCAAAAAAATTTTAAAAAATTC
66 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* * *
16917180 CAAACCGCAAAAAGTTTCAAAAATGGTGAAAAAAAGAAAACGAGTCGTCTTGCCATGAAACTTCA
131 CGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * **
16917245 CGTGAAGGCTTAAGGGACCATTGTATGAATGTAGAAGCCATAAAAATGGCATTGGCACATAGAAA
196 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAA
* * * * *
16917310 TATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGACTTGCGCAACCCATCCCTCT
261 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* *
16917375 GGCCGACGTAGTGCCTGCCCGCCCGTCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAG
326 GGCCGACGTAGTGCCCGCCCG-CC-T--GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* ** * * *
16917440 TTCATTCCCAGTCTAAGATCGGACTGGA-TCGAGGGTTGTGGTAGCAGGATCGGCAGCATGCAGA
387 TTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGA
* * * * *
16917504 GGGGAACCCGATCGATCCCCGGCTGGCGCATCCTGCCCCTCTGGCCGACTGAGCGCTCGCACGCT
451 GGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
* * * * * * *
16917569 CATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCTGTCTTAGCATACAGAGTTGATTCCC
516 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
* * *
16917634 AGTCTAAGATCGGATCAGACCAAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
581 AGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* * ** * *
16917699 CGTAATTTTCTTCG-CTGGGGCACCATCACCGGAGCATCACCGGAGAACCTGACCGACGGCGTTG
646 CGCATTTTTCTTCGTC-GGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTG
*
16917763 GGGTTCCGGCGATCGAGGGGGCCGTGGGGGGTGTG-GCACATGATGTGTGATGGGTGCTGGTACT
710 GGGTTCCGGCGATCG-GGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* * *
16917827 TGGCCCTTATAATGG-CCCCTATCCCTCATCAAACGTCG-GAGACTCATA-CCCTTAAAGAGCAT
772 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA-ACTCACACCCCTTAAAGAGCAT
*
16917889 TTGAGA-TTTACAGGTTTGCTGCCAGTAGCCATT-AAGTGTCTGGAATAGGGGACA-TTTTTT
836 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGGACACTTTTTT
*
16917949 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-AATTTTTTGTGCATTCCAAAAAA
1 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAAAAAA
* * * *
16918013 AATACAAGGATCACGTTTACCAGGTTTGGGGCCAAAACTTCTTCCGAAAAAATTTTAAAAAGT-C
66 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
*
16918077 CG-ACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
131 CGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* *
16918141 CCTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAGTGGCATGTAGAAA
196 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAA
* * * *
16918206 TATGAAGATGTACCTAAACCCACCTCCCACCCTATCAATCCATGGCTTGCGCATCCCGTCTCTCT
261 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* ** * *
16918271 GGCCGACGTAGT----GCCCGCCT----GCTCATTTAATCGGTTGGCTTCGGCATACAGAGTTCA
326 GGCCGACGTAGTGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * * * *
16918328 TTCCTAGTCTAAGATCAAACCAGACTGAGGGTTGTGGCAGCAAGATTGGCAGCACGCAGAAGGGG
391 TTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGG
** * * * * *
16918393 ACCCGATCGATCCCCATCTTGCGCATCCCGCCCCTCTGGCCGACTGAGTGCCCGTACCCTCATTT
456 ACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
* * * * *
16918458 TGTGGGATGACTTAGGCATAAGGAATTCATTCCCAGTCTAAGCATAAGGAGTTCATTCCCAGTCT
521 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * * *
16918523 AAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGATGAGTTCGGGCATGTGCTGGTGCCGCAC
586 AAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
* *
16918588 TTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCAGAGGCATTGGGGTTC
651 TTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTC
* *
16918653 CGGCGATCGGGGGGGCCAGGGCGGTGTGCGCACATGATGTGCTATGGGTGCTGGTACTTGGCCCT
716 CGGCGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
*
16918718 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAAAGCATTTGAGAT
779 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC-TTAAAGAGCATTTGAGAT
* *
16918783 TTTACAGGTTTGCTGCCAGTAGCGAGTAAAGTGTCTGAAATGGGGACACTTTTTT
843 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* *
16918838 CAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAA
1 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAAAAAA
* ** * * *
16918903 AATACAAGGATCATGTCTACCAAGTTTCAGGTCAAAACTCTTTCCAAAAAAAATTTTAAAAAATC
66 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-GAAAAAATTTTAAAAAATC
* ** *
16918968 CCGAATCGCAAAAAGTTTTGAAAATGGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
130 CCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * *
16919033 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTTGCATGGAGAA
195 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAA
* * *
16919098 ATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCATCTCTC
260 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * *
16919163 TGGCCGGCGTAGTGCCCGCCCACCTGCCCGCTCGTTTCGTCGGTTAGCTTAGGCATACGGAGTTC
325 TGGCCGACGTAGTGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* ** * *** * * **
16919228 ATTCCCAATCTAAGATCAGACCAGACTGACAGATGCAAAAGCAGGATCGACAACACATAGAGGGG
390 ATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGG
* ** * *
16919293 GACTCGATCGAT-CCCGGCTTGCGCATCGTGCCCCTCTGGTCGGCTGAGCGCCCGCACACTCGTT
455 GACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
* *
16919357 TCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTC
520 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* * ** * * * * *
16919422 TAAGATCAGACCAAACCAAGGGTTACGGCAGCACATGCTAGGCTGGGGCATGT-CTGGTGCTGCA
585 TAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
* ** * *
16919486 TTTTTCTTCGTCGAGGCACCATCGTCGGAGTATCGTCGGAGAACCTGACCGTCGGCATTGGGGTT
650 TTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTT
* * * * * * *
16919551 CCAGTGAT-AGGGCGCCGGGGGGTGGGCACACATGATGTGCGATGGGTGCTGGTATTTGGCCCTT
715 CCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* * * *
16919615 ATACTGGCCCCCTATCCCTCATCAAACCTCAAGATCCCACACCCTCTTAAAGAGCATTTGAGATT
780 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC-CTTAAAGAGCATTTGAGATT
* * *
16919680 TTTCAGGTTTGCTGCCAGTAGCAATTAAAGAGTCTGAAATGGGGACACTTTTTT
844 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
*
16919734 CAAATGGTCACAAAATCTTGAACACTTCGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAAAAAA
1 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAAAAAA
** * *
16919799 AATACAAGGATCACGTCTACCAAGTTTGGGAACAAAACTCCCTCCAAAAAAATTTTAAAAAATCC
66 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* * * *
16919864 CGAACCGCAAAAATTTTCAAAAATTGTGAAAAATAGTAAACTAGTCGTCTTGCCATGAAACTTCA
131 CGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
*
16919929 CCTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAA
196 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAA
* * *
16919994 TATGAAGACGTGCCTAAACCCACCTACCACCCTATCGATCCATGACTTGCGCATCCCGTCTCTCT
261 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * *
16920059 -GCCCAGCGTAGTGCCCTCCCGCCCGCACGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
326 GGCCGA-CGTAGTGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * * *
16920123 ATTCCCAGTCTAAGATCCGACCAGACCGAGGGTTGCGGCTGCAGGATCGGCAGCACGGAGAGGGG
390 ATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGG
* * * *
16920188 GACCCGATCGATCCTCGACTTGCGCATCCGGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTT
455 GACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
* * *
16920253 TCATGGGTTGACTTAGGCATACGGAGTTCATTCCCATTCAAAGCATACGGAGTTCATTCCCAGTC
520 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* * *
16920318 TTAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGCCTCGGACATGTGCTGGTGCCGCA
585 TAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
* * ***
16920383 -TTTTCTTCGTCGGGGCACCATCGCCGGAGCGTAACCGGAGAACCTGACCGGCGGCATTGGGGTT
650 TTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTT
* *
16920447 CCGACGATCGGGGGGGCCGTGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCC
715 CCGGCGATC-GGGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
*
16920512 CTTATATTGGCCCCCTATCCCTCGTCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGA
777 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGA
16920577 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
842 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* *
16920633 CAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTG-AATTTTCTTGTGCATTCCAAAAA
1 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTT-TTGTGCATGCCAAAAA
* * * * *
16920697 AAATAAAAGGATCACTTTTACCAAGTTTAGGGCCAAAACTCCTTCCGACAAAATTTTAAAAAATC
65 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
* * * * *
16920762 CTGAACCGCAAAATGTTTCAAAAATCATGAAAAATAGAAAACGTGTCGTCTTGCTATGAAACTTC
130 CCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * * *
16920827 ACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGGTAGTGGCATGTAGAA
195 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAA
* *
16920892 ATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTT
260 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* ** * * *
16920957 TGGTCGACGTAGTGCCCGCCTGCCCGCCCACCCCCTTGTTTCATCGGTTGGCTTAGGCATACGGA
325 TGGCCGACGTAGTG--C-CC-GCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * * **
16921022 GTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGTAGGATCGGCAGCACATAGA
386 GTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGA
** * * * * * *
16921087 GGGGGACCCGGCCGATCCCCGTCTTGCACGTCCCGCCCCTCTGGCTGGCTGGGTGCCCGCACGCT
451 GGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
* * * *
16921152 CGTTTTGTGGGTTGACTTAGGCATATGGAATTCATTCCCAGTCTAAGCATACAGAGTTCATTCCC
516 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
* * * *
16921217 AGTCTAAGATCGGATTGGACCGAGGGTTGCGGCAGCACGTGCTAGGTTCGGGCATGTGCTGGTGC
581 AGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
** * * * *
16921282 CGCATTTTTCTTCGTTTGGGCACCATCACCAGAGCATTGTCGGAGAACCTGACCGACGGCATTAG
646 CGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGG
* * *
16921347 GGTTCTGGTGAACGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
711 GGTTCCGGCGATC-GGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* *
16921412 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGATAACTCACACCCCCTTAAAGAGC----
774 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTT
* *
16921473 ---A-TTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTT
838 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* *
16921529 GAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTG-AATGTTTTTGTGCATG-CAAACA
1 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAAT-TTTTTGTGCATGCCAAA-A
*
16921592 AAAATACAGGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
64 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* * * * *
16921657 CCAGAACCGCAAAAAGTTTCGATAATGGTGAAAAATAGAAAACGAATCGTCTTGCCATGAAACTT
129 CCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * *
16921722 CACGTGAAGGCTTAAGGGACCATTGTATTAATTTACAAGCCA-ATAAAATGGCATTGGCACGCAG
194 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA-AAAATGGCATTGGCATGTAG
* * * * *
16921786 AAATATGAAGATGTGCCTAAACACACCTACCACCCTGTCGATCCACGACTTGCGTATCCCATCTC
258 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * **
16921851 TCTGGCCGACGTACTGTCCGTCCGTCC-G-CC-CTCGTTTCGTCGGTTGGCTTAGGCATATAGAG
323 TCTGGCCGACGTAGTGCCCGCCCG-CCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
** * * *
16921913 TTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGATAGTAGGATCAGCAGCATGCAGAG
387 TTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAG
* * * * * *
16921978 GGGAACCCGGTCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGTTG
452 GGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* ** * *
16922043 GTTTCATGGGTTGACTTAGGCATACAAAGTTCATTCCCAGCCTAACCATACGGAGTTCATTCCCA
517 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * *
16922108 GTCTAAGATCGGACCGGACCGAGGGTTGCAGTAGCACATGCTGGGCTTGGGCATGTGCTGGTGCC
582 GTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * *
16922173 GCATTTTTCTTCATCGAGGCACCATCATCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGG
647 GCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGG
*
16922238 GTTCCGGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
712 GTTCCGGCGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
16922303 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
776 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGA
*
16922368 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAGGTGTCTGAAATGGGGAC-CTTTTCTT
840 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT-TT
* *
16922426 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGATGAAATTTTTTGTGCATGCCAATAAA
1 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAAAAAA
* * * ** ** *
16922491 AATACAAGGATCACATC-AGCAAAGCTTGGGGTTAAAACTCCTTTTGAGAAAATTTTAAAAAATC
66 AATACAAGGATCACGTCTA-CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
** * * * * * *
16922555 TTGAACCGTAAAAA-TTTTAGAAAATCATGAAAAATAAAAAATGAGTCGTCATGCCATGAAACTT
130 CCGAACCGCAAAAAGTTTCA-AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* *
16922619 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGCATAAAAATGGCATTGGCATGCAGA
194 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGA
* * *
16922684 AATATGAAGGTGTGCCTAAACCCACATACCACCCTATCGATCCACGGCTTGCGCATCCCGTCCCT
259 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * * * *
16922749 CTGGCCGACGTAGTG-CCGACCTGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATATGCAGT
324 CTGGCCGACGTAGTGCCCG-CCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * *
16922813 TCATTCCCAGTCTAAGATC-G---A-A-T-AGGATT---G-AG--GGTTTCAGCAGCATGCAGAG
388 TCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGG-ATCGGCAGCACGCAGAG
* * *
16922865 GGGGACCCAATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAACGCCTGCACGCTC
452 GGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
*
16922930 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGCTCATTCCCA
517 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * * ** * * * * *
16922995 GTCTAAGATTGAACCAGACAAAGGGTTACAGTAGCACATGCTGGGCTCGGGCATGTGTTGGTGTC
582 GTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* ** ** * * **
16923060 GTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAAGCTGACCGACAACATTGGG
647 GCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGG
* *
16923125 GTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGGTGTGCGATGGGTGCTGGTACTTGACC
712 GTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
*
16923190 CTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
777 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAG
* * *
16923255 ATTTTACAGGTTTGCTGCCAATAGCAATTAAAGTGTCCGAAATGGGGACACTTTTTT
841 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * *
16923312 CAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAAAAAA
1 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAAAAAA
*
16923377 AATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAACTCCTT-CG--AAAATTTATAAAAAATC
66 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT-TAAAAAATC
* * *
16923439 CTGAACCGCAAAAAGTTTTCAAAAATCGTGAAAAA-AGAAAACGAGTC--ATTGCCATGAAACTC
130 CCGAACCGCAAAAAG-TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* *
16923501 CACGTGAAGGCTTAAGGGACCATTTTATGAA-TTACAAGCCAT-AAAATGGCAATTGGCATGCAG
194 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC-ATTGGCATGTAG
16923564 AAATATGAAGATG-GCCTAAACCCACCTACCA-CCTATCGAT-CA-GGCTTGCGCATCCTC-TCT
258 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC-CGTCT
* * ** * * *
16923624 CGGTCTGGCCG-C---CT-CTCGTCTAGCC--CACGTTTGTTT-GTCGGTTGGCTTAGGCATACG
322 C--TCTGGCCGACGTAGTGCCCG-CCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* ** * * *
16923681 AAGCTTCATTCCCAGTCTAAGATTGGACGA-AC--AAGGTTGCGGAAGCA-GATC-GCAAGCAC-
384 GAG-TTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGC-AGCACG
* * * * * * *
16923740 AAGA-AGGGACCCG-GCGAT--CCTGCTTG-GCATCCTGCCCCTCTGGCCGGCTGAGTG-CCGGA
447 CAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* ** * *
16923799 CGCTCATTTCGTGGGTTGACTTA-GCATACGGAGTTCATTCATAGTCTAAGCACACGAAGTTCAT
512 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * * * * * *
16923863 TCCCAGTCTAAGGTCAGACCAGATCAAGGGTTGTGGCAGCACATGCTGGGCTCAGGCATGTGCTG
577 TCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * * * *
16923928 GTGCTGCATTTTTCTTGGACGGGGCACCATCGCCAGAGCATCGTCGGAGAACCTGACCGGCGGCA
642 GTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGGCGGCA
* * * *
16923993 TTGGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGCTAC
707 TTGGGGTTCCGGCGA-TCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
16924058 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
771 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCA
* *
16924123 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGAGGACACTTTTTT
835 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * ** *
16924186 CAAATGGTCACAAAATCTTGTACACTTCGACTTGTTAGCTGAAATTTTTCCTACATGCCAAAAAA
1 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAAAAAA
* * * * *
16924251 ATTACAAGGATCACGTCTACCAAGTTTGGGGCCAAGACTACATGCGAAAAAATTTTAAAAAATCC
66 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
** * * * *
16924316 CGAACCGCAAAAAGTTTTGAATATCATGAAAAATAGAAAACGAGTCATCTTGCCTTGAAACTTCA
131 CGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* *
16924381 CATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGCATGTAGAAA
196 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAA
* *
16924446 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCC
261 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * *
16924511 AGCCGGCGTAGTGCCCGCCCCCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
326 GGCCGACGTAGTGCCCG----CCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * * * *
16924576 TTCATTCCCAGTCTATGATTAAACCAGACCGACGCTTGCGGCAGCA
387 TTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCA
16924622 CATGCTGGGC
Statistics
Matches: 11380, Mismatches: 1347, Indels: 451
0.86 0.10 0.03
Matches are distributed among these distances:
872 21 0.00
873 182 0.02
874 289 0.03
875 49 0.00
876 42 0.00
877 29 0.00
878 49 0.00
879 58 0.01
880 57 0.01
881 57 0.01
882 47 0.00
883 60 0.01
884 435 0.04
885 46 0.00
886 274 0.02
887 276 0.02
888 37 0.00
889 197 0.02
890 736 0.06
891 586 0.05
892 586 0.05
893 458 0.04
894 64 0.01
895 372 0.03
896 1253 0.11
897 658 0.06
898 244 0.02
899 1190 0.10
900 426 0.04
901 1059 0.09
902 645 0.06
903 674 0.06
904 224 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (897 bp):
CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAAAAAA
AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
CGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAA
TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
GGCCGACGTAGTGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
TTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGG
ACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
AAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
TTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTC
CGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTT
ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
Found at i:16922093 original size:26 final size:26
Alignment explanation
Indices: 16922063--16922113 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
16922053 TTGACTTAGG
16922063 CATACAAAGTTCATTCCCAGCCTAAC
1 CATACAAAGTTCATTCCCAGCCTAAC
** *
16922089 CATACGGAGTTCATTCCCAGTCTAA
1 CATACAAAGTTCATTCCCAGCCTAA
16922114 GATCGGACCG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.31, G:0.12, T:0.25
Consensus pattern (26 bp):
CATACAAAGTTCATTCCCAGCCTAAC
Found at i:16922592 original size:26 final size:26
Alignment explanation
Indices: 16922539--16922594 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 26
16922529 TCCTTTTGAG
* ***
16922539 AAAATTTTAAAAAATCTTGAACCGTA
1 AAAATTTTAAAAAATCATGAAAAATA
*
16922565 AAAATTTTAGAAAATCATGAAAAATA
1 AAAATTTTAAAAAATCATGAAAAATA
16922591 AAAA
1 AAAA
16922595 ATGAGTCGTC
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.59, C:0.07, G:0.07, T:0.27
Consensus pattern (26 bp):
AAAATTTTAAAAAATCATGAAAAATA
Found at i:16922989 original size:26 final size:26
Alignment explanation
Indices: 16922949--16923001 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16922939 GTTGACTTAG
*
16922949 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
16922975 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
16923001 G
1 G
16923002 ATTGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:16923859 original size:26 final size:26
Alignment explanation
Indices: 16923821--16923874 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
16923811 GGGTTGACTT
* * *
16923821 AGCATACGGAGTTCATTCATAGTCTA
1 AGCACACGAAGTTCATTCACAGTCTA
*
16923847 AGCACACGAAGTTCATTCCCAGTCTA
1 AGCACACGAAGTTCATTCACAGTCTA
16923873 AG
1 AG
16923875 GTCAGACCAG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (26 bp):
AGCACACGAAGTTCATTCACAGTCTA
Found at i:16925271 original size:722 final size:718
Alignment explanation
Indices: 16923856--16925318 Score: 2087
Period size: 722 Copynumber: 2.0 Consensus size: 718
16923846 AAGCACACGA
* * * * * *
16923856 AGTTCATTCCCAGTCTAAGGTCAGACCAGATCAAGGGTTGTGGCAGCACATGCTGGGCTCAGGCA
1 AGTTCATTCCCAGTCTAAGATCAAACCAGACCAACGCTTGCGGCAGCACATGCTGGGCTCAGGCA
** *
16923921 TGTGCTGGTGCTGCATTTTTCTTGGACGGGGCACCATCGCCAGAGCATCGTCGGAGAACCTGACC
66 TGTGCTGGTGCCCCATTTTTCTTCGACGGGGCACCATCGCCAGAGCATCGTCGGAGAACCTGACC
** * * *
16923986 GGCGGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTG
131 GAAGGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATAGGTG
*
16924051 CTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
196 CTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTA
*
16924116 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGAGGACACT
261 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTCTCTGAAATGAGGACACT
*
16924181 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTGTTAGCTGAAATTTTTCCTACATGCCA
326 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTGTTAGCTGAAATTTTTCCTACATGCCA
* *
16924246 AAAAAATTACAAGGATCACGTCTACCAAGTTTGGGGCCAAGACTACATGCGAAAAAATTTTAAAA
391 AAAAAATTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTACATCCGAAAAAATTTTAAAA
* * **
16924311 AATCCCGAACCGCAAAAAGTTTTGAATATCATGAAAAATAGAAAACGAGTCATCTTGCCTTGAAA
456 AATCCCGAACCGCAAAAAGTTTGGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCACGAAA
* * * *
16924376 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGCATGT
521 CTTCACATGAAAGCTTAAGGGACCATTGTACGAATTGACAAGCCAAAAAAATGGCATTGGCAAGT
16924441 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTC
586 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTC
* * * * *
16924506 TCTCCAGCCGGCGTAGTGCCCGCCCCCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
651 TCTCCAGCCGGCGTAGTGACCGCCCCCCCACCAGTCCGCTCGTTTCGTCAGTTGGCATAGGCATA
16924571 CGG
716 CGG
* * *
16924574 AGTTCATTCCCAGTCTATGATTAAACCAGACCGACGCTTGCGGCAGCACATGCTGGGCTC-GAGC
1 AGTTCATTCCCAGTCTAAGATCAAACCAGACCAACGCTTGCGGCAGCACATGCTGGGCTCAG-GC
* * * * * *
16924638 ATTTGCTGGTGCCCCATTTTTCTTCGCCTGGGCACCATCGTCGGAGCATGGTCGGAGAACCTGAC
65 ATGTGCTGGTGCCCCATTTTTCTTCGACGGGGCACCATCGCCAGAGCATCGTCGGAGAACCTGAC
* * * * * *
16924703 CGAAGGCATTAGGTTTTCGATGATCGGGGGGGCGGGGGGGCGCGGTGTGCGCGCATGATGTGCGA
130 CGAAGGCATTAGGGTTCCGACGATCGGGGGGGC---CGGG-G-GGTGTGCACACATGATGTGCGA
*
16924768 TAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC-CC
190 TAGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
* **
16924832 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTCTCTGACTTG-G
255 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTCTCTGAAATGAG
** **
16924896 GCACACTTTTTTCAAATGGTCA-ACAAATCTTGTACACTTCGAGATT-TTAGCTGACTTTTTTTG
320 G-ACACTTTTTTCAAATGGTCACA-AAATCTTGTACACTTCGA-ATTGTTAGCTGAAATTTTTCC
* * *
16924959 TGCATGCCAACAAAATTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CTTTCCGAAAA
382 TACATGCCAAAAAAATTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTAC-ATCCGAAAA
** * * * * *
16925023 AATTTTCCAAAATCTCGATCCGTAAAAAGTTTGGAAAATCATGAAAGATAGAAAACGAGTCGTCT
446 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTGGAAAATCATGAAAAATAGAAAACGAGTCATCT
* *
16925088 TGCCACGAAACTTCACGTGAAAGCTTAAGGGACCATTGTACGAATTGACAAGCCATAAAAATGGC
511 TGCCACGAAACTTCACATGAAAGCTTAAGGGACCATTGTACGAATTGACAAGCCAAAAAAATGGC
* *
16925153 ATTGGCAAGTAGAACTATGAAGATGTGCCTAAACCCACCT-CCAACCCTATCGATCCACGGCTTG
576 ATTGGCAAGTAGAAATATGAAGATGTGCCTAAACCCACCTACC-ACCCTATCGATCCACGGCTTA
* ** * *
16925217 CGCATTCCGTCTCTCTGGCTGGCGTAGTGACCGCCCGCCCACCAG-CCTGCTCGTTTCGTCAGTT
640 CGCATCCCGTCTCTCCAGCCGGCGTAGTGACCGCCCCCCCACCAGTCC-GCTCGTTTCGTCAGTT
*
16925281 GGCATGGGCATACGG
704 GGCATAGGCATACGG
16925296 AGTTCATTCCCAGTCTAAGATCA
1 AGTTCATTCCCAGTCTAAGATCA
16925319 GACCGCACCA
Statistics
Matches: 656, Mismatches: 77, Indels: 20
0.87 0.10 0.03
Matches are distributed among these distances:
717 1 0.00
718 135 0.21
721 11 0.02
722 428 0.65
723 81 0.12
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.25
Consensus pattern (718 bp):
AGTTCATTCCCAGTCTAAGATCAAACCAGACCAACGCTTGCGGCAGCACATGCTGGGCTCAGGCA
TGTGCTGGTGCCCCATTTTTCTTCGACGGGGCACCATCGCCAGAGCATCGTCGGAGAACCTGACC
GAAGGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATAGGTG
CTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTCTCTGAAATGAGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTGTTAGCTGAAATTTTTCCTACATGCCA
AAAAAATTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTACATCCGAAAAAATTTTAAAA
AATCCCGAACCGCAAAAAGTTTGGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCACGAAA
CTTCACATGAAAGCTTAAGGGACCATTGTACGAATTGACAAGCCAAAAAAATGGCATTGGCAAGT
AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTC
TCTCCAGCCGGCGTAGTGACCGCCCCCCCACCAGTCCGCTCGTTTCGTCAGTTGGCATAGGCATA
CGG
Found at i:16929960 original size:897 final size:901
Alignment explanation
Indices: 16928482--16931323 Score: 3505
Period size: 897 Copynumber: 3.1 Consensus size: 901
16928472 CCAGTCCGAT
* * *
16928482 CTTAGACTGGGAATGAACTCCGTATGCCTTAGTCAACTCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTCAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
* * * * * **
16928547 CTGCCAGAGGGGCGAGATGTGCAAGTCGGGGATCGGTCGGGT-CCCCTCTACGTGCTGTCGATAT
66 CGGCCAGAGGGGCGAGATGCGCAAGTCCGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCAATCC
* * *
16928611 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATAAACTCCGTATTCCTAAGCCAA
131 TGCTG-CGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
16928676 CCGACAAAACG-AGCGAGCGGGTGGGCGGGCGGGCACTACGTCGGCCAGAAAGGACGAGATGCGC
195 -CGACAAAA-GAAACGAGCGGGCGGGCGGGC-GACACTACGCCGGCCAGAGA-GACGGGATGCGC
* *
16928740 AAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCACTA-TTCTACATGCCAATG
256 AAGCTATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA-TATTTCTTCATGCCAATG
* *
16928804 CCATTTTTTATGGCTTGTAAATTCCATACAGTGGTCCTTAAGCATTCACGTGAAGTTTCCATGGC
320 CCATTTTTTATGGCTTGTAAATT-CATACAATGGTCCTTAAGCCTTCACGTGAAGTTT-CATGGC
* *
16928869 AAGACGACTCGTTTTCTATTTTTGATGATTTTTG--ACTTTTTTACGGATCGAGATTTTTTAAAA
383 AAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC-TTTTTACGGTTCGAGATTTTTTAAAA
* * * * * * *
16928932 TTTTTT-TGGAAAGATTTTTTGGCCCCCAAACTTGGTA-ACATAATCCTTGTATTTATGTTGGAA
447 TTTTTTCAGGAAGGAGTTTCTGG-CCCCAAACTTGGTAGACGTGATCCTTGTATTT-TGTTGGCA
* * * *
16928995 TGCATAAAAAAATTCAGCTAAAAGCTCGAAGTGTACAACATTTTGGGACCATTTGAAAAAAGTGT
510 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
* *
16929060 CCCCATTTCAGACACTTTAAATGGCTACTGGCAGCAAACCTGTAAACTCTCAAATGCTCTTTAA-
575 CCCCATTTCAAACACTTT-AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
*
16929124 GGGGTGTGAGTTTTCGAGGTTTTGATGAGGG-TA-GGGGCCTAATATAAGGGCCAAGTACCAGCA
639 GGGGTGTGAGTTCTCGAGG-TTTGATGAGGGATAGGGGGCC-AATATAAGGGCCAAGTACCAGCA
* *
16929187 -CCATCACACATCATGTGCGCACA-CCCCCGGCCCCCCGATCGTCGGAACCCGCAATGACACCGG
702 CCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCC-CAATGCCACCGG
** * * *
16929250 TCAGGTTCTCCGGTGATGCTCCGACGTTGGCGCCCC-GACGAAGAAAAATGTGGCACCAGCAC-T
766 TCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGACGAAGAAAAATGCGGCACCAGCACAT
** * *
16929313 GTTCGAGTCCAGCATGTGCTGC-GCAACCGTCGGTCCTG-TCCGATC-TAGACT-AGAATGAACT
831 GCCCGAGCCCAGCATGTGCTGCTGCAACCGTCGGTCC-GATCCGATCTTAGACTGGGAATGAACT
16929374 CCGTATG
895 CCGTATG
* *
16929381 CTTAGACTGGGAATGAACTCCGTA-GCTCTCAGTCAACCCACGAAATGAGCGTGCAGGCACTCAG
1 CTTAGACTGGGAATGAACTCCGTATGC-CTCAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAG
* *
16929445 CCGGCCAGAGGGGCGGGATGCGCAAGTCCGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCCAAT
65 CCGGCCAGAGGGGCGAGATGCGCAAGTCCGGGATCGGTCGGGTCCCCCTCTACGTGCTG-CCAAT
* * * * *
16929510 CCTGTTGCGCAACCCTCAATCCGATCTGATCTTACACTGGGAATG-ACT-CGTATGCCTAAGCCA
129 CCTGCTGCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* *
16929573 ATCGACGAAAGAAACGGGCGGGCGGGCGGGCGACCACTACGCCGGCCAGAGAGACGGGATGCGCA
194 A-CGACAAAAGAAACGAGCGGGCGGGCGGGCGA-CACTACGCCGGCCAGAGAGACGGGATGCGC-
16929638 AAGCTATGGATCGATAGGGTGGTAGGTGGGTTTA-GCACATCTTCATATTTCTTCATGCCAATGC
256 AAGCTATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTTCATGCCAATGC
* * *
16929702 CATTTTTTATGGCTTGTAAACTCATACAATGGTCCCCTAAGCCTTCACATGAAGTTTCATGGCAA
321 CATTTTTTATGGCTTGTAAATTCATACAATGGT-CCTTAAGCCTTCACGTGAAGTTTCATGGCAA
** * * *
16929767 GACGACTTTTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTT-TAATTT
385 GACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTT
*
16929831 TTTCAGGAAGGAGTTTCTGGCCCGAAACTTGGTAGACGTGATCCTT-TATTTTGGTTGGCATGCA
450 TTTCAGGAAGGAGTTTCTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT-GTTGGCATGCA
* * *
16929895 TAAAAAAATTCAGCTAAAAACTCGAAAGTGTACAAGATTTTGTGACGATTTGAAAAAAATGTCCC
514 CAAAAAAATTCAGCTAAAAACTCG-AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* * *
16929960 CATTTCAAACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATTTCAAATGCCCTTTAAGGGGG
578 CATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* *
16930025 TGTGAGTTCTC-AGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACACATC
643 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* *** **
16930089 GCACATCATGTGCGCACACCCCTCCCGACCCCCCCGATCGTTAAAACCCCAATGCCGTCGGTCAG
708 GCACATCATGTGCGCACA-CCC-CCCG-GCCCCCCGATCGTCGGAACCCCAATGCCACCGGTCAG
** * * * * *
16930154 GTTCTCCGGTGATGCTCCGGCGACGGTACCCCTGACGAAGAAAAATGCGACACCAGCACATGCCC
770 GTTCTCCGACGATGCTCCGACGATGGTGCCCCGGACGAAGAAAAATGCGGCACCAGCACATGCCC
* * **
16930219 GATCCCAACATGTGCTGCAACAACCGTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTA
835 GAGCCCAGCATGTGCTGCTGCAA-C--C-GT-C-G---G-TC-----C---G-AT---C--CG-A
16930284 TGCTTAGACTGGGAATGAACTCCGTATG
875 T-CTTAGACTGGGAATGAACTCCGTATG
* * *
16930312 CTTAGACTGGGAATGAACTCCGTATGCCTCAGTCAACCCACGAAACGA-TGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTCAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
* * * *
16930376 CGGCCAGAGGGGCGAGATGTGCATGT-CGATGATCGGCCGGGTCCCCCTCTACGTGCTGCCAATC
66 CGGCCAGAGGGGCGAGATGCGCAAGTCCG-GGATCGGTCGGGTCCCCCTCTACGTGCTGCCAATC
** * *
16930440 CTGCTGCTATAACCCTCAGTTTGGCCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
130 CTGCTGC-GCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
16930505 ACAGACAAAACAAGCGGGCGGGCGGGC-GG-G-CACTACGCTGGCCAGAGAGACGGGATGCGCAA
194 AC-GACAAAAGAAACGAGCGGGCGGGCGGGCGACACTACGCCGGCCAGAGAGACGGGATGCGCAA
*
16930567 GCTATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT-TGT-GTGCCAATGCC
258 GCTATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-TCATGCCAATGCC
*
16930630 A-TTTTTATGGATTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC-TGAAGTTTCATGGCAAG
322 ATTTTTTATGGCTTGTAAATTCATACAATGGT-CCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * *
16930693 ACGACTTGTTTTCTATTTTTTATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTT
386 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
* * *
16930758 TTC-GAAAGGAGCTT-TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTGGCATGCACA
451 TTCAGGAAGGAGTTTCTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTGTTGGCATGCACA
* * * *
16930821 AAAACATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGGCCATTTGAAAAAGGTGTCCCCAT
516 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * *
16930886 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAAGGGGTGT
581 TTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
16930951 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
646 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * *
16931016 CACCATGTGCGCACACCCCACCTGGCCCCCCCGATTGTCGGAACCCCAATGCCGCCGGTTAGGTT
711 CATCATGTGCGCACACCCC-CC-GG-CCCCCCGATCGTCGGAACCCCAATGCCACCGGTCAGGTT
* * * *
16931081 CTCAGACGGTGCTCCAACGATGGTGCCCCGGA-GAAGAAAAATGTGGCACCAGCACATGCCCGAG
773 CTCCGACGATGCTCCGACGATGGTGCCCCGGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* * * * * * * *
16931145 CCCAGCATGTGCTACTGCGACCCTCGGTCCGCTCCGATCTTAGATTGGGAATGAACTTCATACG
838 CCCAGCATGTGCTGCTGCAACCGTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * **
16931209 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTCAAA
1 CTTAGACTGGGAATGAACTCCGTATGCCTCAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
* *
16931274 CTGCTAGAGGGGCTG-GATGCGCAAG-CCAGGGATCGG-CAGGGTCCCCCTCT
66 CGGCCAGAGGGGC-GAGATGCGCAAGTCC-GGGATCGGTC-GGGTCCCCCTCT
16931324 GCATATCGGG
Statistics
Matches: 1688, Mismatches: 183, Indels: 145
0.84 0.09 0.07
Matches are distributed among these distances:
895 12 0.01
896 177 0.10
897 279 0.17
898 142 0.08
899 104 0.06
900 90 0.05
901 49 0.03
902 18 0.01
903 3 0.00
904 2 0.00
905 1 0.00
906 1 0.00
907 2 0.00
908 2 0.00
909 1 0.00
912 1 0.00
913 4 0.00
914 1 0.00
917 1 0.00
918 2 0.00
919 1 0.00
920 2 0.00
922 3 0.00
923 155 0.09
924 184 0.11
925 87 0.05
926 51 0.03
927 48 0.03
928 48 0.03
929 15 0.01
930 97 0.06
931 66 0.04
932 39 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (901 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTCAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
CGGCCAGAGGGGCGAGATGCGCAAGTCCGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCAATCC
TGCTGCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
GACAAAAGAAACGAGCGGGCGGGCGGGCGACACTACGCCGGCCAGAGAGACGGGATGCGCAAGCT
ATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTTCATGCCAATGCCATTT
TTTATGGCTTGTAAATTCATACAATGGTCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAG
GAAGGAGTTTCTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTGTTGGCATGCACAAAAAA
ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAA
ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
TGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCGACG
ATGCTCCGACGATGGTGCCCCGGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
GTGCTGCTGCAACCGTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:16930296 original size:26 final size:26
Alignment explanation
Indices: 16930260--16930338 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
16930250 CCGGTCTGAT
*
16930260 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16930286 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16930312 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16930338 C
1 C
16930339 CTCAGTCAAC
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16931233 original size:923 final size:930
Alignment explanation
Indices: 16929365--16931235 Score: 2761
Period size: 923 Copynumber: 2.0 Consensus size: 930
16929355 ATCTAGACTA
*
16929365 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAGCTCTCAGTCAACCCACGAAATGAG
1 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAGCTCTCAGTCAACCCACGAAACGAG
* *
16929430 CGTGCAGGCACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCCGGGATCGGTCGGGTCCCCCTC
66 CGTGCAGGCACTCAGCCGGCCAGAGGGGCGAGATGCGCAAGTCCGGGATCGGCCGGGTCCCCCTC
* * * *
16929495 TGCGTGCTGCCCAATCCTGTTGCGCAACCCTCAATCCGATCTGATCTTACACTGGGAATGACTCG
131 TACGTGCTGCCCAATCCTGCTGCACAACCCTCAATCCGACCTGATCTTACACTGGGAATGACTCG
* *
16929560 TATGCCTAAGCCAATCGACGAAAGAAACGGGCGGGCGGGCGGGCGACCACTACGCCGGCCAGAGA
196 TATGCCTAAGCCAATCGACAAAACAAACGGGCGGGCGGGCGGGCGA-CACTACGCCGGCCAGAGA
16929625 GACGGGATGCGCAAAGCTATGGATCGATAGGGTGGTAGGTGGGTTTAGCACATCTTCATATTTCT
260 GACGGGATGCGCAAAGCTATGGATCGATAGGGTGGTAGGTGGGTTTAGCACATCTTCATATTTCT
*
16929690 TCATGCCAATGCCATTTTTTATGGCTTGTAAACTCATACAATGGTCCCCTAAGCCTTCACATGAA
325 TCATGCCAATGCCATTTTTTATGGATTGTAAACTCATACAATGGTCCCCTAAGCCTTCACATGAA
* *
16929755 GTTTCATGGCAAGACGACTTTTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGAT
390 GTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGAT
* * * *
16929820 TTTTTTAATTTTTTCAGGAAGGAGTTTCTGGCCCGAAACTTGGTAGACGTGATCCTTTATTTTGG
455 TTTTTAAATTTTTTCAGAAAGGAGCTTCTGGCCCCAAACTTGGTAGACGTGATCCTTTATTTTGG
* *
16929885 TTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAAGTGTACAAGATTTTGTGACGATTTGAAA
520 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAAGTGTACAAGATTTTGTGACCATTTGAAA
* * *
16929950 AAAATGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATTTCAAATGCCC
585 AAAATGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCCC
*
16930015 TTTAAGGGGGTGTGAGTTCTCAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCA
650 TTTAAAGGGGTGTGAGTTCTCAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCA
* * *
16930080 GCACACATCGCACATCATGTGCGCACACCCCTCCCGACCCCCCCGATCGTTAAAACCCCAATGCC
715 GCACACATCGCACACCATGTGCGCACACCCCACCCGACCCCCCCGATCGTCAAAACCCCAATGCC
* * ** ** *
16930145 GTCGGTCAGGTTCTCCGGTGATGCTCCGGCGACGGTACCCCTGACGAAGAAAAATGCGACACCAG
780 GCCGGTCAGGTTCTCAGACGATGCTCCAACGACGGTACCCCGGACGAAGAAAAATGCGACACCAG
* * * * *
16930210 CACATGCCCGATCCCAACATGTGCTGCAACAACCGTCGGTCCGGTCTGATCTTAGACTGGGAATG
845 CACATGCCCGAGCCCAACATGTGCTACAACAACCCTCGGTCCGCTCCGATCTTAGACTGGGAATG
* *
16930275 AACTTCGTATGCTTAGACTGG
910 AACTTCATACGCTTAGACTGG
16930296 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC-CTCAGTCAACCCACGAAACGA
1 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA-GCTCTCAGTCAACCCACGAAACGA
* * ** * * *
16930360 -TGTGCGGGTGCTCAGCCGGCCAGAGGGGCGAGATGTGCATGT-CGATGATCGGCCGGGTCCCCC
65 GCGTGCAGGCACTCAGCCGGCCAGAGGGGCGAGATGCGCAAGTCCG-GGATCGGCCGGGTCCCCC
* * ** * *
16930423 TCTACGTGCTG-CCAATCCTGCTGCTATAACCCTCAGTTTGGCCTGATCTTAGACTGGGAATGAA
129 TCTACGTGCTGCCCAATCCTGCTGC-ACAACCCTCAATCCGACCTGATCTTACACTGGGAATG-A
* *
16930487 CTCCGTATGCCTAAGCCAA-CAGACAAAACAAGCGGGCGGGCGGGC-GG-G-CACTACGCTGGCC
192 CT-CGTATGCCTAAGCCAATC-GACAAAACAAACGGGCGGGCGGGCGGGCGACACTACGCCGGCC
16930548 AGAGAGACGGGATGCGC-AAGCTATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
255 AGAGAGACGGGATGCGCAAAGCTATGGATCGATAGGGTGGTAGGTGGGTTTA-GCACATCTTCAT
* * *
16930612 ATTT-TGT-GTGCCAATGCCA-TTTTTATGGATTGTAAATTCATACAATGGTCCCTTAAGCCTTC
319 ATTTCT-TCATGCCAATGCCATTTTTTATGGATTGTAAACTCATACAATGGTCCCCTAAGCCTTC
*
16930674 AC-TGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTTATGATTTTTGAAACTTTTTGCGGT
383 ACATGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGT
16930738 TCGAGATTTTTTAAAATTTTTTC-GAAAGGAGCTT-TGGCCCCAAACTTGGTAGACGTGATCCTT
448 TCGAGATTTTTT-AAATTTTTTCAGAAAGGAGCTTCTGGCCCCAAACTTGGTAGACGTGATCCTT
* * *
16930801 GTATTTT-TTTGGCATGCACAAAAACATTCAGCTAAAAACTC-AAAGTGTACAAGATTTTGTGGC
512 -TATTTTGGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAAGTGTACAAGATTTTGTGAC
** *
16930864 CATTTGAAAAAGGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCT
576 CATTTGAAAAAAATGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCT
* *
16930929 CAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
641 CAAATGCCCTTTAAAGGGGTGTGAGTTCTC-AGGTTTGATGAGGGATAGGAGGCCAATATAAGGG
* * * * **
16930994 CCAAGTACCAGCACCCATCGCACACCATGTGCGCACACCCCACCTGGCCCCCCCGATTGTCGGAA
705 CCAAGTACCAGCACACATCGCACACCATGTGCGCACACCCCACCCGACCCCCCCGATCGTCAAAA
* * * *
16931059 CCCCAATGCCGCCGGTTAGGTTCTCAGACGGTGCTCCAACGATGGTGCCCCGGA-GAAGAAAAAT
770 CCCCAATGCCGCCGGTCAGGTTCTCAGACGATGCTCCAACGACGGTACCCCGGACGAAGAAAAAT
* * * ** *
16931123 GTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACTGCGACCCTCGGTCCGCTCCGATCTTAG
835 GCGACACCAGCACATGCCCGAGCCCAACATGTGCTACAACAACCCTCGGTCCGCTCCGATCTTAG
*
16931188 ATTGGGAATGAACTTCATACGCTTAGACTGG
900 ACTGGGAATGAACTTCATACGCTTAGACTGG
16931219 GAATGAACTCCGTATGC
1 GAATGAACTCCGTATGC
16931236 CTAAGTCAAC
Statistics
Matches: 846, Mismatches: 83, Indels: 30
0.88 0.09 0.03
Matches are distributed among these distances:
923 216 0.26
924 191 0.23
925 86 0.10
926 51 0.06
927 46 0.05
928 46 0.05
929 14 0.02
930 91 0.11
931 66 0.08
932 39 0.05
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (930 bp):
GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAGCTCTCAGTCAACCCACGAAACGAG
CGTGCAGGCACTCAGCCGGCCAGAGGGGCGAGATGCGCAAGTCCGGGATCGGCCGGGTCCCCCTC
TACGTGCTGCCCAATCCTGCTGCACAACCCTCAATCCGACCTGATCTTACACTGGGAATGACTCG
TATGCCTAAGCCAATCGACAAAACAAACGGGCGGGCGGGCGGGCGACACTACGCCGGCCAGAGAG
ACGGGATGCGCAAAGCTATGGATCGATAGGGTGGTAGGTGGGTTTAGCACATCTTCATATTTCTT
CATGCCAATGCCATTTTTTATGGATTGTAAACTCATACAATGGTCCCCTAAGCCTTCACATGAAG
TTTCATGGCAAGACGACTTGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATT
TTTTAAATTTTTTCAGAAAGGAGCTTCTGGCCCCAAACTTGGTAGACGTGATCCTTTATTTTGGT
TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAAGTGTACAAGATTTTGTGACCATTTGAAAA
AAATGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCCCT
TTAAAGGGGTGTGAGTTCTCAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAG
CACACATCGCACACCATGTGCGCACACCCCACCCGACCCCCCCGATCGTCAAAACCCCAATGCCG
CCGGTCAGGTTCTCAGACGATGCTCCAACGACGGTACCCCGGACGAAGAAAAATGCGACACCAGC
ACATGCCCGAGCCCAACATGTGCTACAACAACCCTCGGTCCGCTCCGATCTTAGACTGGGAATGA
ACTTCATACGCTTAGACTGG
Found at i:16931821 original size:26 final size:26
Alignment explanation
Indices: 16931771--16931821 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
16931761 CGGTCTGATC
* * *
16931771 TTAGACTGGGAATGAACTTCGTATGG
1 TTAGACTGGAAATGAACTCCATATGG
*
16931797 TTAGATTGGAAATGAACTCCATATG
1 TTAGACTGGAAATGAACTCCATATG
16931822 CCTGAGTCAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.31, C:0.12, G:0.25, T:0.31
Consensus pattern (26 bp):
TTAGACTGGAAATGAACTCCATATGG
Found at i:16932711 original size:26 final size:26
Alignment explanation
Indices: 16932675--16932725 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
16932665 TAGTCTGATC
16932675 TTAGACTGGGAATGAACTCCGTATGG
1 TTAGACTGGGAATGAACTCCGTATGG
*
16932701 TTAGATTGGGAATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
16932726 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGG
Found at i:16933614 original size:26 final size:26
Alignment explanation
Indices: 16933578--16933630 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16933568 CTGATCCAAT
16933578 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
16933604 CTTAGACTGGGAATGAACTTCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
16933630 C
1 C
16933631 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:16934444 original size:895 final size:898
Alignment explanation
Indices: 16931332--16941620 Score: 12854
Period size: 883 Copynumber: 11.5 Consensus size: 898
16931322 CTGCATATCG
* * * *
16931332 GGATTTTTTAAAATTTTTT--GAATGGCGTTTT-GTCCCAAACTTTGTAGACATGATCCTTGTAT
1 GGATTTTTTAAAATTTTTTCGGAA-GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
*
16931394 TTTTGTTGGCATGCACCAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGA-CAGTT
65 TTTTGTTGGCATGCA-CAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA-TT
*
16931458 TGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACT-GCAGCAAACCTGTAAAATCTTCAA
128 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC-TCAA
*
16931522 ATTCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA-GGATAGGGGGCCAATATAAGGGCCA
192 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* * * * * *
16931586 AGTCACCAACACCCATCACACATTATGTGCGCACACCCCCCCCGGGACCCCC-ATTGTCAG-AAC
257 AGT-ACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCC-GGCCCCCCGATCGTCGGAAAC
* * * * * * * * *
16931649 CCTAATGCTGTCAGTCAAGTTCTCCG-CGACGCTTCGGTGATTGTGCCCCGGCGAAGAAAAATAC
319 CC-AATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCCGGCGAAGAAAAATGC
* * * *
16931713 GGCACCAAGCACTTGCCCCGA--CCAGCATGTGCTGCCGCAACCCTC-GTCCGGTCTGATCTTAG
383 GGCACC-AGCACATG-CCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAG
* * * * *
16931775 ACTGGGAATGAACTTCGTATGGTTAGATTGGAAATGAACTCCATATGCCTGAGTCAACCCACGAA
446 ACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * * * ** **
16931840 ACGAGCGTGCGGGTGCTCAGCCGGCCAGAAGGGTGGGATGCGCAAGTCATGGATCAACCGGGTCC
511 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCC
** * * * * **
16931905 CTTTCCTGCATGCTG-CGATCATGCTGCCCCCAACCTCGGT-CGGTCCAATCTTAGACTGGGAAT
576 CCCT-CTGCGTGCTGCCGATCCTGCTGCCGCAAACCTCGGTCCGGTCTGATCTTAGACTGGGAAT
* *
16931968 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG-GACGGGCGGGCGGGCACCACGCGGGCC
640 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAG-C-GGCGGGCGGGCACTACGCCGGCC
* * *
16932032 AGAGAGATGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCGTCATA
703 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
*
16932097 TTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG-CCCGTTAAGCGCTTCA
768 TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC-TTAAGC-CTTCA
* * *
16932161 TGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGA-TTTTCAAAACTTTTTGCGGT
831 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTCAAAACTTTTTGCGGT
16932225 TCA
896 TCA
* * * * *
16932228 AGATTTTTCAAAATTTTTTCGGAAGAAGTTTTCGGGCCGAAACTTCGGTA-AGCGTGATCCTTGT
1 GGATTTTTTAAAATTTTTTCGGAAGGAGTTTT-GGCCCCAAACTT-GGTAGA-CGTGATCCTTGT
* * * *
16932292 ATTTTTGTTGCCATGTAACAAAACAATTCAGCTAAAAAACTCGAAGTGTATAGGATTTTGTGACC
63 ATTTTTGTTGGCATG-CACAAAA-AATTCAGCT-AAAAACTCGAAGTGTACAAGATTTTGTGA-C
* *
16932357 CATTTGAAAATAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAGCTGTAAAATCT
124 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
16932422 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGG
189 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* * * *
16932486 CCAAGTACCAGCACCCCATCGCACATCCTGTTCG--CACGCCCCCGGCCCCCCGATCGTCAG-AA
254 CCAAGTACCAGCA-CCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAAA
* * * *
16932548 CCCAAATGTCGTCGATCAGGTTCTCCGACGATGCTCC-AGTGATGGTGCCCCGACGAAGAAAAAT
318 CCC-AATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGA-TGATGGTGCCCCGGCGAAGAAAAAT
* * * *
16932612 GTGGCACCAGCACTTGCCCGAGCCCAGCATGTGCTGCGCCGCCACCCTCGGTCT-AGTCTGATCT
381 GCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT--GCCGCAACCCTCGGTCTGA-TCCGATCT
* *
16932676 TAGACTGGGAATGAACTCCGTATGGTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCAT
443 TAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * * * * * *
16932741 GAAACGAGCGTGTGGGCGCTCAGCCGGCCATAAGGGTGGGATGCGCAAGTCGTGGCTC-GACGGG
508 GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGG
* * * * * *
16932805 T-CCCCTCTACGTGCTACCGATCCTGCTGCCCCAACCCTCGG-CTCGGTCTAATCTTAGAATGGG
573 TCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAAACCTCGGTC-CGGTCTGATCTTAGACTGGG
* *
16932868 AATGAACTCTGTATGCCTAAG-CAACCGACGAAACGAGCGGGCGGGCGATCGTGCAGGCGGGCAC
637 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGC--G-G--C--G--GGCGGGCAC
* * * * *
16932932 TACGCTGGCCAAAGAGATGGGACGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
693 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
16932997 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
758 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* *
16933062 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTATGATTTTT-GAAACTT
823 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTCAAAACTT
16933126 TTTGCGGTTCA
888 TTTGCGGTTCA
* * * * *
16933137 AGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGTCCCCAAAATTGGTAGACATGTTCCTTGTATT
1 GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
*
16933202 TTTTTTGGCATGCGGA-AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
66 TTTGTTGGCATGC--ACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
*
16933266 GAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
129 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
16933331 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
194 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* * * *
16933396 TACCAGCACCCATCGCACATCATGTGTGCACACCCCCCGGGCCCCCCCGATC-CCGGAACCCCAA
259 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCCCCGATCGTCGGAAACCCAA
** * * ** * * *
16933460 TGCCAACGGTCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCTCGGTGAAGAAAAATGTGGCAC
323 TGCCGCCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCCGGCGAAGAAAAATGCGGCAC
* * * ** * *
16933525 CAGCACATGCCGGAGCCTAGCATGTGCTGCAGCAACCCTATGTCTGATCCAATCTTACACTGGGA
388 CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGA
* *
16933590 ATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCG
453 ATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * * ** *
16933655 TGCGGGCGCTCAACCGGCCAGAGGTGCGAGATGCGCAAGCCCAGGATCGACCGGGTCCCCCTCTG
518 TGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTG
* * * *
16933720 CGTGCTGCCGATCCTGCTGCTGCAAACCTCGGTTCGGTCTGATCTTACACTGGGAATGAACTCTG
583 CGTGCTGCCGATCCTGCTGCCGCAAACCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCG
** ** * *
16933785 TATGCCTAAGCCAACCGACGAAACGAGCGAGCGAGTAGGCGGGCACTACGCCGGCTTGAGATAGG
648 TATGCCTAAGCCAACCGACGAAACGAGCGAGCG-GCGGGCGGGCACTACGCCGGCCAGAGAGACG
* * **
16933850 GGCTGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTATGCACATCTTCATATTTCTGTGT
712 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAT
** *
16933915 GCCAATGAAATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACCTGAA-TTTC
777 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* * * * *
16933979 ATGGCAAGATGACTCGTTTTCAATTTTTCACGATTTTTGAAACCTTTTTGCGGTTCA
842 ATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTCAAAACTTTTTGCGGTTCA
* ** *
16934036 GGATTTTTTAAAATTTTTTCGGAAGGAGATTTGGCCCCAAACTTTTTGGACGTGATCCTTGTA-T
1 GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
*
16934100 TTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCGGAGTGTACAAGATTTTGTGACCATTTGA
66 TTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
* *
16934165 AAAAAGTGT-CCCATTTCAAACA-TTTCGATGGCTACT-GCAGCAAACCTGTAAAATCTCAAATG
131 AAAAAGTGTCCCCATTTCAGACACTTT-AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* *
16934227 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTGGATAAGAGG-TAGGGGGCCAATATAAGGGCCAAG
195 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG-GGATAGGGGGCCAATATAAGGGCCAAG
* *
16934291 TACCAGCACCCATCGCACATCATGTGTGCACACGCCCCTCGGCCCCCCGATCGTC-GAAACCCAA
259 TACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCCGGCCCCCCGATCGTCGGAAACCCAA
** * * **
16934355 TGCAACCGGTCAGGTTCTCCGATGATGCTCCGATGATGGTGCCCCGGCGATGAAAAATGTAGCAC
323 TGCCGCCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCCGGCGAAGAAAAATGCGGCAC
* * *
16934420 CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGATCTCATCCGATCTTAGACTGGGA
388 CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGA
* * * * * *
16934485 ATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTACGTCTAAGTCAACCCATGAAACAAGCG
453 ATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * ** *
16934550 TGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATACGCAAGCCGGGGATCGGTAGGGTCCCCCTCTA
518 TGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTG
* * * ** *
16934615 CGTGTTGCCGATCCTGCTGCCACAACCCTTAGTCCGGCCTGATCTTAGACTGGGAATGAACTCCG
583 CGTGCTGCCGATCCTGCTGCCGCAAACCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCG
* ** * * * * * *
16934680 TATGCCTAAGCCAATCGGTGAAACAAGCGGGTAGGCGAGCGGGCACTACGTCAGCCAGAGAGACG
648 TATGCCTAAGCCAACCGACGAAACGAGCGAG-CGGCGGGCGGGCACTACGCCGGCCAGAGAGACG
* * * *
16934745 GGATGTGCTAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCT-AAG
712 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA-
16934809 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT--CGTGAAGTTT
776 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* * *
16934872 CATGGCAAGACGACTCG-TTTCTATTTTTCACGA-TTTTCAAAACTTTATGCAGTTCA
841 CATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTCAAAACTTTTTGCGGTTCA
* *
16934928 GGATTCTTTAAAATTTTTTCGGAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
1 GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
* * *
16934993 TTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACCCAAAGTGTACAAGATTTTGTGACCATTTG
66 TTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
*
16935058 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAGACCTGTAAAATCTCAAATG
130 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* *
16935123 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTGGATAAGAGG-TAGGGGGCCAATATAAGGGCCAAG
195 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG-GGATAGGGGGCCAATATAAGGGCCAAG
* *
16935187 TACCAGCACCCATCGCACATCATGTGTGCACACGCCCCTCGGCCCCCCGATCGTC-GAAACCCAA
259 TACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCCGGCCCCCCGATCGTCGGAAACCCAA
** ** * **
16935251 TGCAACCGGTCAGGTTCTCCGGTGATGCTCCGATGATGGTGCCCCGGCGATGAAAAATGTAGCAC
323 TGCCGCCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCCGGCGAAGAAAAATGCGGCAC
* *
16935316 CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCTCATCCGATCTTAGACTGGGA
388 CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGA
* * * * * *
16935381 ATGAACTTCGTATGCTTAGACTGGGAATGAACCCCGTATGCCAAAGTCAACTCACGAAATGAGCG
453 ATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * **
16935446 TGCGGGCGTTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGTGGGGTCCCCCTCTG
518 TGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTG
* * ** * ** ** * *
16935511 CGTGCTGCCAATCCTACTGCCATAACCCTCGGTCCAATCCAATATAAGACTGGGAATGAACTCCG
583 CGTGCTGCCGATCCTGCTGCCGCAAACCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCG
* * * ** *
16935576 TATGCCTAAGCCAACCGACGAAACGAACGGGCTGGCGGGCAGGCACTACATCGGCCTGAGAGACG
648 TATGCCTAAGCCAACCGACGAAACGAGCGAGC-GGCGGGCGGGCACTACGCCGGCCAGAGAGACG
* * * *
16935641 GGATGCGCAAGCCGTGGATCGATTGGGGGGTAGTTGGGTTTAGGCACATCTTCATATTTCTACAT
712 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAT
** *
16935706 GCCAATGCCATTTTCGTGGCTTGTAAATTCATACAATGTTCCCTTAAGCCTTCACGTGAAGTTTC
777 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* * **
16935771 ATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTT-GAAACTTTTTGCGGTTTG
842 ATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTCAAAACTTTTTGCGGTTCA
* * * *
16935827 GGATTTTTAAAAATTTTTTCGGAAGGATTTTTGGTCCCAAACTTGGTATACGTGATCCTTGTATT
1 GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
* * *
16935892 TTGGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCCAAGGGTACAAGATTTTGTGACCATTTG
66 TTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* *
16935957 AAAAAAGTGT-CCCATTTCAGACACTTTAATGTCTACTGGCAGCAAACCTGTAAAATTTCAAATG
130 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
*
16936021 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGCATAGGGGGCCAATAT--------AGT
195 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * * * *
16936078 ------ACCCATCTCACATCATTTGCGCAC-TCCCCCTGGCCCCCTC-CTCGTC-GAAACCCCAA
260 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC-CGATCGTCGGAAA-CCCAA
* * ** *
16936134 TGCCGCCAGTCAGGTTCTCCGACGATG----G-T-A-----ACCCAACGAAGAAAAATACGGCAC
323 TGCCGCCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCCGGCGAAGAAAAATGCGGCAC
* ** * ** * ** *
16936188 TAGCACATGCCTTAGCCAAGCATGTGCTGTAGCAACCCTCGGCCCAATCCAATCTTAGACTGGGA
388 CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGA
* * ** *
16936253 ATGAACTCTGTATGCTTAGACTGGGAATGAACTCTATATGCCTAAGTCAACCCATGAAACGAGCG
453 ATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * * * * *
16936318 TGCGGGCGCTTAGTCGGCCAGAGGGGCGGGATGCACAAGCTGGGGATCGGCCAGGTCCCCCTTTG
518 TGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTG
* * * * * **
16936383 CGTGCTGTCGATCCTGTTGCCGCAACCCTCAGTCCAGT-TCGATCTTAGACTGGGAATGAACTTT
583 CGTGCTGCCGATCCTGCTGCCGCAAACCTCGGTCCGGTCT-GATCTTAGACTGGGAATGAACTCC
* * * * *
16936447 GTATGCCTAAG-CAATCCGATGAAACGA--GAG-GGCGGGTGGGCAATAAGTCGGCCAGAGAGAC
647 GTATGCCTAAGCCAA-CCGACGAAACGAGCGAGCGGCGGGCGGGCACTACGCCGGCCAGAGAGAC
* * * * *
16936508 GGGATACGCAAGCCGTGGATCAATAGAGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTACA
711 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA
* *
16936573 TGCCAATGCCATTTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCACATGAAGTTT
776 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* * * * *
16936638 CATGGCAAGACGACTAGTTTACTATTTTTCACGATTTTT-GAAACTTTTTGAGGTTCGA
841 CATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTCAAAACTTTTTGCGGTTC-A
* * *
16936696 GG-TTTTTGAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGAAGTGATCCTTGTATT
1 GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
* *
16936760 TTTGTTGGTACGCACAAAAAAATTCAGCTAAAAAC-CTGAAGTGTACAAGATTTTGTGACCATTT
66 TTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAACTC-GAAGTGTACAAGATTTTGTGACCATTT
* * * * * *
16936824 GAAAAAAGTATCCTCATTTCAAACACTTTAATAGCTACTGGCAGCAAACCTATAAAATCTTAAAT
129 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
16936889 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
194 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* * *
16936954 TACCAGCACCCATGGCACATCATGTGCGCACA-CCCCCCGACCCCCCGATCGTCGGAACCCCAAT
259 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAAACCCAAT
* * * * * **
16937018 GCCGTCGGTCAGGTTCTCCGGCGATCCTCCGACGATGGTGCCCCGACGAAGAAAAATGTTGCACC
324 GCCGCCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCCGGCGAAGAAAAATGCGGCACC
* * * * * *
16937083 AGCACATGCCCGA-CAACAGCATGTGCTGTCGTAACCCTCGGTCTGGTCTGATCTTAGACTAGGA
389 AGCACATGCCCGAGC-CCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGA
*
16937147 ATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCA
453 ATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * ** * ** *
16937212 TGCGGGTGCTCAGCCGGCTAGA-GGGCGGGATGCGTGAGCCAGGGATCGGCCGGGTCCGTCTCTA
518 TGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTG
* * * * * * *
16937276 CGTGCTGTCGATCCTACTACCGC-AACTGTCAGCCCGATCTGATCCTT-GACTGGGAATGAACTC
583 CGTGCTGCCGATCCTGCTGCCGCAAAC-CTCGGTCCGGTCTGAT-CTTAGACTGGGAATGAACTC
* * * *
16937339 CATATGCCGAAGCCAACCGACGAAAGGAGCGAGCGAGCGGGTGGGCGGGCACTACACCGGCCAGA
646 CGTATGCCTAAGCCAACCGACG-AA--A-CGAGCGAGC-GGCGGGCGGGCACTACGCCGGCCAGA
* * * *
16937404 GAGACGAGATGCGCAAGCCGTTGATCGATAGGGTGGTAGGTTGGTTTAGGCACATCATCATATTT
706 GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
* * *
16937469 CTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATCCAATGCTCCCTTAAGCCTTCACGTGA
771 CTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
* * ** *
16937534 AGTTTCATGGCAACACGACTCATTTTCTATTTTTCATGA-TTTTCAAAACTTTTTATGGTTCG
836 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTCAAAACTTTTTGCGGTTCA
* * *
16937596 GGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGTCCCAAACATGGTAGACGTGATCCTTGTATT
1 GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
* * * * * *
16937661 TTTGTTGGCATGCAAAAAAAAATCAGCTAAAATCTCGAAGTCTACAAGATTTTGCGACCATTTCA
66 TTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT-G
16937726 AAAAAAGTGTCCCCATTTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
130 AAAAAAGTGTCCCCA-TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* * *
16937791 GCTCTTTAAGAGGGTGTGAGTTCTTGAGGTTTGAT--GGGATAGGGGGCCAATATAAAGGCCAAG
194 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* * ** *
16937854 TACCAGCACCAATCACACATCATGTGCGCACACCCCCCCGGCCCCCCGATCACCGGAACCCCAAT
259 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAAACCCAAT
* ** * *
16937919 GTCGCCGGTCAGGTTCT-C--CG--G---C---GATGGTGCCCCGATGAAGAAAAATACGGTACC
324 GCCGCCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCCGGCGAAGAAAAATGCGGCACC
* * * * * *
16937973 AGCACATGCTCGAGCCCAACTTGTGCTGTCGCAAGCCTCGGTCTGATCTGATCTTAGACTGGGAA
389 AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAA
* * *
16938038 TGAACTCTGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACACACAAAACGAGCGT
454 TGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * * * * * * **
16938103 GCAGGCACTCAGCCGGCCAAAGGGGCGGGATGCACGAGCCGGGGATGGGTCAGGTCCGTCTCTGC
519 GCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGC
* * * * * * * * * * *
16938168 ATGCTGTCGATCCTACTACCGTAATCCTCAGCCCGGTCTGATCCTCGACTGGGAATGAACTCCAT
584 GTGCTGCCGATCCTGCTGCCGCAAACCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGT
* *
16938233 ATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCGAGCGGGTGGGCACTACGCCGGCCAGAGAG
649 ATGCCTAAGCCAACCGACGAAACG-A---GCGAGCG-GCGGGCGGGCACTACGCCGGCCAGAGAG
* * *
16938298 ACGGAATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGCTTAGGCACATCTTCATATTTCTG
709 ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG
**
16938363 TGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
774 CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
* * *
16938428 TTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTT-AAAACTTTTTACGGTTCG
839 TTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTCAAAACTTTTTGCGGTTCA
* * * *
16938487 GGATTTTTTTAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGCTAGACATGATCCTTGTATT
1 GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
*
16938552 TTT-TTGGCTTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
66 TTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
*
16938616 AAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
130 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
*
16938681 CTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
195 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * *
16938746 ACCAGCACCCATCGCACATCATGTGCGTACACCACCCCCGGCCCCCCGATCGCCGGAACCCCAAT
260 ACCAGCACCCATCGCACATCATGTGCGCACACC-CCCCCGGCCCCCCGATCGTCGGAAACCCAAT
* * * *
16938811 GCCGTCGATCAGGTTCT---TCGAT--T---ATGA---T---CCGGTGAAGAAAAATGCGGCACC
324 GCCGCCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCCGGCGAAGAAAAATGCGGCACC
* *
16938862 AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGATCCGATCTTAGACTGGGAA
389 AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAA
* * * * *
16938927 TGAACTCGGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGT
454 TGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * *
16938992 GTC-GGCGCTCAGCCGGCCAAAGGGGCGGGATGCACAAGCCGGGGATCGACCGGGTCCCCCTCTG
519 G-CGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTG
* * * * ** *
16939056 CGTGCTGCCGATCCTGCTGCCACAACCCTCAGTCCAGTCCAATCTTAGACTAGGAATGAACTCCG
583 CGTGCTGCCGATCCTGCTGCCGCAAACCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCG
* * *
16939121 TATGCCTAAGCCAACCGAC-AAA--A-CGA---GCGGGTGGGCACTACGTCGGCCAGAGAAACGG
648 TATGCCTAAGCCAACCGACGAAACGAGCGAGCGGCGGGCGGGCACTACGCCGGCCAGAGAGACGG
*
16939179 GATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
713 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
* * *
16939244 CCAATGCCATTTTTATGTCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGATGTTTCA
778 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * * * *
16939309 TGGCAAGACGACTCGTTTTCTATTTTTCAAGA-TTTTCGAAACCTTTTACGGTTCG
843 TGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTCAAAACTTTTTGCGGTTCA
* * * * *
16939364 GGATTTTTTAAAATTTTTTTGGAAGTAGTTTTGTCCCCAAACTTGGTAGACGTCATCCCTGTATT
1 GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
* *
16939429 TTTGTTGGCATGCACAAAACAATTCAGCTAAAAATTCGGAGTGTACAAGATTTTGTGACCATTTG
66 TTTGTTGGCATGCACAAAA-AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
16939494 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
130 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* * * *
16939559 CTCTTTAAGGGGGTATGAGCTCTCGAGGCTTGATGAGGGATAGGGGGCCAATATAAGGGCCATGT
195 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * ** *
16939624 ACCAGCACCCATTGCACATCATGTGCGCACACCCTCCCCCCCGCCCCCCGATCACCGGAACCCCA
260 ACCAGCACCCATCGCACATCATGTGCGCACA--C-CCCCCCGGCCCCCCGATCGTCGGAAACCCA
* * *
16939689 ATGCCGCTGGTCAGGTTCTCC-A--A-----C---GATGGTGCCCCAGTGAAGAAAAATGCGGCA
322 ATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCCGGCGAAGAAAAATGCGGCA
* * * * *
16939743 CCAGCACATGCCCGAGCCAAGCATGTGCTGCCACAACCCTTGGTCTGGTCTGATCTTAGACTGGG
387 CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGG
*
16939808 AATGAACTCCATATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
452 AATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
* * * * ** *
16939873 GTGCGGGCGCTCAGCCGACCAGTGGGGTGGGATGCGCAAGCCGGGGTTCGGTTGGGTCCCACTCT
517 GTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCT
** * * * * * * *** *
16939938 TTGTGCTGCTGATCTTGCTGTCGCCACCCTTGGTCTAATCTAATCTTAGACTGGGAATGAACTCC
582 GCGTGCTGCCGATCCTGCTGCCGCAAACCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCC
* * *
16940003 GTATGCCTAAGCCAACCGACGAAACGAGC-A------GGTGGGCACTACGTCGGGCAGAGAGACG
647 GTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGCGGGCGGGCACTACGCCGGCCAGAGAGACG
** *
16940061 GGATGCATAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTGCATATTTCTGCAT
712 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAT
* * *
16940126 GCCAATGGCATTTTTATGGCTTGCAAATTCATACAATGGTCCCTTAAGCCTTCCCGTGAAGTTTC
777 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* * **
16940191 ATGGCAAGACGACTCATTTTCTATTTTTCATGA-TTTTCAAAACTTTTTGTGGTTTG
842 ATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTCAAAACTTTTTGCGGTTCA
* * * *
16940247 GGATTTTTTAAAATTTTTTCGGAAGGATTTTTAGCCCCAAACTTCGTAGACGTGATCCTTATATA
1 GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT-
* *
16940312 TTTTTTTGGCATGTACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
65 TTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
* * * *
16940377 G-AAAAAGTGTCCCCATTTTAGACACTTTAATTGCTACTGACAGCAAACCTGTAACATCTCAAAT
129 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* * * *
16940441 GCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATAAGGTATAGGGGGCAAATATAAGGGCCAAG
194 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
*
16940506 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAAT
259 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAAACCCAAT
* * ** * **
16940571 GCCGCCGGTCAGGTTCTCCGATGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCACCACC
324 GCCGCCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCCGGCGAAGAAAAATGCGGCACC
* * * * *
16940636 AACAAATGCCCGAGCCTAGCATGTGCTGCCGCAACCCTCGGTC-CAGTCCAATCTTAGACTGGGA
389 AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGA-TCCGATCTTAGACTGGGA
*
16940700 ATGAACTCCGTATGCTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCG
453 ATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * **
16940765 TGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGAGCAAGCCGGGGATCGGTCGAGACCCCCCTCT
518 TGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCG-GGTCCCCCTCT
* * * * * * * * *
16940830 GCATGCTGCCGATCCTCCTGTCACAACCCTTGGTGCGGTTTGATCTTAGACTGGGAATGAGCTCC
582 GCGTGCTGCCGATCCTGCTGCCGCAAACCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCC
* * * * * *
16940895 GTATGCCCATGCCAACTGACGAAACGAGCAGGTTGGCGGGCGGGCGGGCATTACGCCAGCCAGAG
647 GTATGCCTAAGCCAACCGACGAAACGAGC--G--AGC-GGCGGGCGGGCACTACGCCGGCCAGAG
** *
16940960 AGACGGGATGCGCAAGCATTGGATCGATAGGGTTGG-AGGTGGGTTTAGGCACATCTTCATAGTT
707 AGACGGGATGCGCAAGCCGTGGATCGATAGGG-TGGTAGGTGGGTTTAGGCACATCTTCATATTT
* * * *
16941024 CTACTTTCCAATGCCATTTTTATGGCTTGTCAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
771 CTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
* * * *
16941089 AGTTTCGTGGCAAGACGACTCGTTTTCTCTTTTTCATGA-TTTTCCAAACTTTTTGCGGATC-
836 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTCAAAACTTTTTGCGGTTCA
** * *
16941150 GAGATTTTGGAAAATTTTTTC-GAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAA
1 G-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
* *
16941214 TTTTGTTGGCATGCACAAAAAAGTCAGCTAAAATCTCGAAGTGTACAAGATTTTGTGACCATTTG
65 TTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* *
16941279 AAAAAAGTGTCCCTAATTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
130 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
*
16941344 CTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
195 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * * * *
16941409 ACCAGCACCTATCGCACATCATGTGCGCACACCACGCCTCCCGCCCCCCCGATCATCGAAAACCT
260 ACCAGCACCCATCGCACATCATGTGCGCACA-C-C-CC-CCCGGCCCCCCGATCGTCGGAAACCC
** * * * *
16941474 AATGCCTTCGGTCAGGTTCTCCGACAATGCTCCAACGATGGTGCCCCGGTGAAGAAAAATGCGGC
321 AATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCCGGCGAAGAAAAATGCGGC
* * * * * *** *
16941539 ACCAGCAAATGCTCGAGCCCAGCATGTGCTGCCGCAAGCGTCGGTCTGGTTTAATCATAGACTGG
386 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGG
16941604 GAATGAACTCCGTATGC
451 GAATGAACTCCGTATGC
16941621 CTAAGCCAAC
Statistics
Matches: 8239, Mismatches: 952, Indels: 394
0.86 0.10 0.04
Matches are distributed among these distances:
867 1 0.00
868 316 0.04
869 102 0.01
870 2 0.00
871 3 0.00
872 255 0.03
876 4 0.00
877 266 0.03
878 207 0.03
879 1 0.00
880 93 0.01
881 5 0.00
882 22 0.00
883 755 0.09
884 84 0.01
885 5 0.00
886 2 0.00
887 4 0.00
888 5 0.00
889 339 0.04
890 192 0.02
891 664 0.08
892 215 0.03
893 128 0.02
894 229 0.03
895 595 0.07
896 659 0.08
897 69 0.01
898 182 0.02
899 390 0.05
900 186 0.02
901 424 0.05
902 317 0.04
903 216 0.03
904 606 0.07
905 69 0.01
906 320 0.04
907 65 0.01
908 11 0.00
909 92 0.01
910 136 0.02
911 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
TTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
CCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAAACCCAATGC
CGCCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAG
CACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATG
AACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGT
GCTGCCGATCCTGCTGCCGCAAACCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
GCCTAAGCCAACCGACGAAACGAGCGAGCGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAT
GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
CAAGACGACTCGTTTTCTATTTTTCATGATTTTTCAAAACTTTTTGCGGTTCA
Found at i:16934509 original size:26 final size:26
Alignment explanation
Indices: 16934473--16934522 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
16934463 CTCATCCGAT
*
16934473 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16934499 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
16934523 CGTCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16935405 original size:26 final size:26
Alignment explanation
Indices: 16935369--16935421 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16935359 CTCATCCGAT
**
16935369 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
16935395 CTTAGACTGGGAATGAACCCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
16935421 C
1 C
16935422 CAAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCGTATG
Found at i:16936277 original size:26 final size:26
Alignment explanation
Indices: 16936241--16936293 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16936231 CCAATCCAAT
*
16936241 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
16936267 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCTATATG
16936293 C
1 C
16936294 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:16937173 original size:26 final size:26
Alignment explanation
Indices: 16937135--16937187 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16937125 CTGGTCTGAT
16937135 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
16937161 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16937187 C
1 C
16937188 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16938054 original size:26 final size:26
Alignment explanation
Indices: 16938025--16938077 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16938015 CTGATCTGAT
*
16938025 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16938051 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16938077 C
1 C
16938078 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16938952 original size:26 final size:26
Alignment explanation
Indices: 16938914--16938966 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16938904 CCGATCCGAT
* *
16938914 CTTAGACTGGGAATGAACTCGGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16938940 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16938966 C
1 C
16938967 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16939833 original size:26 final size:26
Alignment explanation
Indices: 16939797--16939849 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16939787 CTGGTCTGAT
16939797 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
16939823 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16939849 C
1 C
16939850 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16940724 original size:26 final size:26
Alignment explanation
Indices: 16940688--16940740 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16940678 CCAGTCCAAT
16940688 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
16940714 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16940740 C
1 C
16940741 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16943212 original size:26 final size:26
Alignment explanation
Indices: 16943176--16943228 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16943166 CTAGTTCAAT
*
16943176 CTTAGACTGGGAATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16943202 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16943228 C
1 C
16943229 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16945887 original size:26 final size:26
Alignment explanation
Indices: 16945836--16945888 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16945826 CCGATCTGAT
* * *
16945836 CTTAGACTGGGAATGAATTTCATATG
1 CTTAGAATGGGAATGAACTCCATATG
*
16945862 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCATATG
16945888 C
1 C
16945889 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCATATG
Found at i:16946792 original size:26 final size:26
Alignment explanation
Indices: 16946741--16946793 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16946731 TTGGTCCGAT
* *
16946741 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16946767 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
16946793 C
1 C
16946794 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16947670 original size:26 final size:26
Alignment explanation
Indices: 16947641--16947693 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16947631 CTGATCCAAT
*
16947641 CTTAGACTGGGAATCAAC-TCTGTATG
1 CTTAGACAGGGAATCAACTTC-GTATG
*
16947667 CTTAGACAGGGAATGAACTTCGTATG
1 CTTAGACAGGGAATCAACTTCGTATG
16947693 C
1 C
16947694 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACAGGGAATCAACTTCGTATG
Found at i:16948151 original size:900 final size:901
Alignment explanation
Indices: 16943415--16949865 Score: 8500
Period size: 900 Copynumber: 7.2 Consensus size: 901
16943405 GCAGGTCGGC
* * **
16943415 GATGCGCAAGCCGTGGATCGATAGGCTGGTATGTGGGTTTAGGCACGCCTTCATATTTCTGCATG
1 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
16943480 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
66 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * * **
16943545 TGGCATGACGACTCATTTTTTATTTTTCACGATTTTCCAAAA-TTTTTGCGGTTCAAGATTTTTT
131 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT-CAAAACTTTTTGCGGTTCGGGATTTTTT
* * * ** * * * *
16943609 AAAATTTTCTCAGAAGGACTTTTAACCCCAAGCTTTGCAGATGTGATCCTTGTATTTTTGTTGGC
195 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
*
16943674 ATGCACAAAAAATTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGGG
260 ATGCACAAAAAA-TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* *
16943739 TCCCCATTTCAGACACCTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
324 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* **
16943804 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGGTAGGGCACCAATATAAGGGCCAAGTACCAGCACC
389 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
*
16943869 CATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCACCGGAACCCCAATGCCGCCGGT
454 CATCGCACATCATGTGCGCACA-CCCCCCAGCCCCCCCGATCACCGGAACCCCAATGCCGCCGGT
* ** * * * *
16943934 CAAGTTCTCCGACGATGCTCCGATGATGGTGCCTCGATGAAGAAAAATGCGGCAGCAGCACATGC
518 CAGGTTCTCCGGTGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGC
** * * * **
16943999 CCGAGCCCAGCATGTGCTGCTACAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCA
583 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCTG
* * * * * * *
16944064 TATGGTTAGGCTGGGAATGAACTTTGTATGCCTAAGTCAACCCATGAAACAAACGTGCGGGTGCT
648 TATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
* * * * ** * **
16944129 CAGTCGGCCAGAGGGGTGGGATGTGTAAGCCGAGGG-TCGACCGGGTTCCCCTCTGCATGCTGTT
713 CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG-GGGATCGGTC-GGTTCCCCTCTACATGCTGCC
* * * * *
16944193 GATCCTTCTGTCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAA
776 GATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * *
16944258 GCCAACTGACGAAACGAGCGGGCGGGCAGAC-GG-A--CAGTACGCCGGCCAGAGAGATGG
841 GCCAACCGACGAAACGAGCGGGCGGACGGGCGGGCAGGCACTACGCCGGCCAGAGAGATGG
* * * * * *
16944315 GATACGCAAGCCGTGGATCGACAGGGTGGTAGGTGTGTTTAGGTACACCTTCATATTTCTGCGTG
1 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
* *
16944380 CCAATGCCA-TTTTATTGGCTTGTAAATTCATACAACGGTCTCTTAAGCCTTCACGTGAAGTTTC
66 CCAATGCCATTTTTA-TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* * * * *
16944444 ATGGCAAGACGATTCGTTTTCTATTTTTCACCATTATCGAAACTTTTTGCGGTTCTGGATTTTTT
130 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTT
*
16944509 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCCTGTATTTTTGTTGGC
195 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
* * *
16944574 ATGCACAAAAACATTCAGCTAAAAACTCAAATTGTACAAGATTTTGTGACCATTTCAAAAAAGTG
260 ATGCACAAAAA-ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
*
16944639 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA-C--T----TGT-AAATGCTCTTTAAG
324 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* * *
16944696 GGGGTGTGAGTTATCAAAGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
389 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * * * * *
16944761 CATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGTTCGCCAGAACCCTAATGCCGTCGGT
454 CATCGCACATCATGTGCGCACA-CCCCCCAGCCCCCCCGATCACCGGAACCCCAATGCCGCCGGT
*** * *
16944826 CAGGTTCTCCGACAATGCTCCGGTGATGGTGCCCCAACGAAGAAAAATACGGCACCAGCACATGC
518 CAGGTTCTCCGGTGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGC
* * * * **
16944891 TCGAACCTAGCACGTGCTGCCGCAACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTCTG
583 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCTG
* * *
16944956 TATGCTTAGACTGGGAAT-AA-TTCCATATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCAC
648 TATGCTTAGACTGGGAATGAACTT-CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
* * * * * * * **
16945019 CCAGCCAGCCAGAGGGGCGGGACGTGCAAGACGGGGATCGGCCGGGTCCCCCTCTATGTGCTGCC
712 TCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC-GGTTCCCCTCTACATGCTGCC
* * ** *
16945084 GATGCTACTATCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
776 GATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * * * * * * * *
16945149 GCCAACCGATGAAACAAGGGGGTGGGCGGGCAGGCGGGCACTACGTCGACCAAAGAGACGG
841 GCCAACCGACGAAACGAGCGGGCGGACGGGCGGGCAGGCACTACGCCGGCCAGAGAGATGG
* * *
16945210 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATATTCATATTTCTACATG
1 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
* * * *
16945275 CCACTACCATTTTTATGTCCTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
66 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * ** * *
16945340 TAGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTA
131 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTA
* * * * *
16945405 AAATTTTTTCGGAAGGAGTTTTGGCCCTAAACTTGGTAAAAGTGATCCTTTTATTTTTGTTGGAA
196 AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
16945470 TGCACAAGAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
261 TGCACAA-AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
* *
16945535 CCCCATTTGAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAA-G
325 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
*
16945599 GGGTGTGAGTTCTCGAGGTTTGACGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
390 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * *
16945664 ATCACACATCATGTGCGCACACCCCCCACGGCCCCCCCGATCGCCGAAACCCCAATGCCGCCGGT
455 ATCGCACATCATGTGCGCACACCCCCCA--GCCCCCCCGATCACCGGAACCCCAATGCCGCCGGT
* ** * *
16945729 CAGGTTCTCCGGTTATGCTCCGACGATGGTGCCCCGACGAAG-AAAATGCAGCACCAGCACATGT
518 CAGGTTCTCCGGTGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGC
* * * * *
16945793 CCGAGGCCAGCATGTGCTGCCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAA-TTTC
583 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCT-
* * * * *
16945857 ATATGCTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGC
647 GTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
* * * * * * * * *
16945922 TCAACCGGCCAAAGGGGTGGGATGTGCAAGTCGAGGATCGATCGGGTCCCCT-TCCCATGCTGCC
712 TCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGTTCCCCTCT-ACATGCTGCC
* * *
16945986 GATCCTACTGCCGCAACCCTCGGTCTGGTCGGATCTTAGACTGGGAATGAACACCGTATGCCTAA
776 GATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
** * * *
16946051 GAGAACCGACGAAACGAGC--G-GG-CGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGG
841 GCCAACCGACGAAACGAGCGGGCGGACGGGCGGGCAGGCACTACGCCGGCCAGAGAGATGG
* *
16946108 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACGTCTTCATATTTCTACATG
1 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
*
16946173 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAGGTGAAGTTTCA
66 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * * *
16946238 TGGCAAGACGACTAGTTTACTATTTTTCACAATTTTTGAAAA-TTTTTGCGGTTCGGGATTTTTT
131 TGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTTCAAAACTTTTTGCGGTTCGGGATTTTTT
* **
16946302 AAAATTTTTTTGGAAGGAGTTTTGTTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
195 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
*
16946367 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTTCAAGATTTTGTGACCATTTGAAAAAAGTG
260 ATGCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* * *
16946432 TCCCCATTTCAGACTCTTTAATGGCTACTGGCATCAAACCTGAAAAATCTCAAATGCTCTTTAAG
324 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* * * * *
16946497 GGGGTGTGGGATCTTGAGGTTTGATGAGGGATAGGGGGCCAGTATAAGGGCCAAATACCAGCACC
389 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * * * *
16946562 CATCGCACATCATGTGTGCACA-CCCCC-G-GCCCCCTATCACTGGAACCCCAATGCCGACGGTC
454 CATCGCACATCATGTGCGCACACCCCCCAGCCCCCCCGATCACCGGAACCCCAATGCCGCCGGTC
* * *
16946624 AGGTTCTCCGACGATACTCCAGCGATACTCCGGTGATGGTGCCTCAACGAAGAAAAATGCGGCAC
519 AGGTTCTCCG--G----T-----GATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCAC
* * * * * *
16946689 CAG-ACATGCCCCAGCCTAGCATGTGGTGCCGCAACCCTTGGTTTGGTCCGATCTTAGACTGGGA
573 CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGA
* * *
16946753 ATGAACT-TCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGC
638 ATGAACTCT-GTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGC
* * * * * * *
16946817 GTGCGGGCGTTCAGCCGACCAGAGGGGCAGGATGCGTAAGTCGGGGATCGATCGAGTCCCCCTCT
702 GTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCG-GTTCCCCTCT
** * * * *** * ** * * * *
16946882 ATGTGTTGTCGATCTTGCTTTTGCATCTGTCAGTCTGGTCTGATCTTAGATTGGGAATGAACTCT
766 ACATGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCC
* * * * *
16946947 GTATGCCTAAGCTAACCGACGAAACGAGCGGGC--A--GGTGGGCGGGCACTATGCTGGCCAGAG
831 GTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGCGGGCAGGCACTACGCCGGCCAGAG
16947008 AGATGG
896 AGATGG
* * *
16947014 GATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTTGGCACATCTTCATATTTCTCCATG
1 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
* * * *
16947079 CAAATGCCATTTTTATGGGCTTCTAAATTAATACAATGGTCCCTTAAGCCTTCACGTGAAGTGTC
66 CCAATGCCATTTTTAT-GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* * *
16947144 ATGGCAAGACGACTCGTTTTCTATTTGTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTT
130 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTT
* * *
16947209 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACCTAGTAGACATGATCCTTGTATTTTTGTTGGC
195 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
*
16947274 ATGCACAAAACAATTCAGCTAAAAACTCCAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
260 ATGCACAAAA-AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
*
16947339 TCCCTA-TTCTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
324 TCCCCATTTC-AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* * * * * *
16947403 GGCGGTGTGAGTTCTCCATGTTTGATTAGGGATA-GGGGCCATTTCTAAGGGCCAAGTACCAGCA
388 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA-ATATAAGGGCCAAGTACCAGCA
* * * *
16947467 CCCATCGCACATCATGTGCGCACACCCCCCAGCCCCCCCGATCATCGAAACCCCAACGTCGCCGG
452 CCCATCGCACATCATGTGCGCACACCCCCCAGCCCCCCCGATCACCGGAACCCCAATGCCGCCGG
* * * *
16947532 TCAGGTTCTCCGGTGATGCTCCGATGATGGTTCCCCGACGAAGAAAATTACGGCACCAGCACATG
517 TCAGGTTCTCCGGTGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATG
* * * * *
16947597 CCTGAGCCCAGCATGTACTGCTGCAACCCTCGGTCTGATCCAATCTTAGACTGGGAATCAACTCT
582 CCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCT
* *
16947662 GTATGCTTAGACAGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGC
647 GTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
* * *
16947727 TCAGTCGGCCAGAGGGGCGGGATGCGCCAGCCGGGGATCGGTCAGGTTCCCCTCTGCATGCTGCC
712 TCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC-GGTTCCCCTCTACATGCTGCC
* *
16947792 GATCCTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAA
776 GATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * *
16947857 GCCAACGGACGAAATGAGCGGGCGGACGGGCGGGCAGGCACTACGCCGGCCAGAGGGATGG
841 GCCAACCGACGAAACGAGCGGGCGGACGGGCGGGCAGGCACTACGCCGGCCAGAGAGATGG
**
16947918 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTG
1 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
* *
16947983 GCAATGCCATTTTTATGGCTTGTACATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
66 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
*
16948048 TGGCAAGACGACTCGTTTTCTATTTTTCACCATTTTCAAAACTTTTTGCGGTTC-GGA-TTTTTA
131 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTA
* ** *
16948111 AAATTTTTT-GGAAGGAGTTTTGACCTGAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCA
196 AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
16948175 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA-TTTGTGACCATTTGAAAAAAGTGT
261 TGCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
* * * *
16948239 CCCCATTTCAGACACTTTACTTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAAG
325 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
16948304 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
390 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * ** * * *
16948369 GTAGCACATCATGTGCGCACACCGCCCTGGCCCCCCCGATCGCCGGAACCCCAATGCCTCTGGTC
455 ATCGCACATCATGTGCGCACACC-CCCCAGCCCCCCCGATCACCGGAACCCCAATGCCGCCGGTC
** * *
16948434 AGGTTCTCCGACGATGCTCCGGTGATGGTGCCCCGATGAAGAAAAGTGCGGCACCAGCACATGCC
519 AGGTTCTCCGGTGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCC
* * * * *
16948499 CGAACCCATCATGTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGT
584 CGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCTGT
* * * * *
16948564 ATGCTTAGACTGGGAATGAA-TTCCTTATGCCTAAGTCAACCCACAAAACGAGGGTACGGGCACT
649 ATGCTTAGACTGGGAATGAACTT-CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
** * * *
16948628 CAGCCGGCCAGAGGGGCGGGATGCGCAAGATGGGGATCGGTCGGGTCCCCTTCTACGTGCTGCCA
713 CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGTTCCCC-TCTACATGCTGCCG
* * ** * *
16948693 ATCCTGCTGCCACAACCCTCAGTCTGGTTTGATTTTAGACTGGGAATGAACTCTGTATGCCTAAG
777 ATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
** * *
16948758 CCAACCGATTAAATGA--------ACGGGC--G--GGCACTACGCCGGCCAGAGAGACGG
842 CCAACCGACGAAACGAGCGGGCGGACGGGCGGGCAGGCACTACGCCGGCCAGAGAGATGG
* * * * *
16948806 GATGCGCAAGCCATGGATTGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCTTATTTCTACATG
1 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
* *
16948871 CCACTGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAGGTGAAGTTTCA
66 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
** * *
16948936 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGACTTTTTA
131 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTA
* * *
16949001 AAATTTTTTCGGAAGAAGTTTTGGCCCCAAACCTGGTAGACGTGATCCTTGTATTTTTTTTGGCA
196 AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
*
16949066 TGCACAAAACAATTCAGCTAAAAACTCCAAGTGTACAAGA-TTTGTGACCATTTGAAAAAAGTGT
261 TGCACAAAA-AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
* *
16949130 CCCTA-TTCTAGACACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAG
325 CCCCATTTC-AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* * * * *
16949194 GCGGTATGAGTTCTCCACGTTTGATGAGGGATA-GGGGCCATTTATAAGGGCCAAGTACCAGCAC
389 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA-ATATAAGGGCCAAGTACCAGCAC
* * * *
16949258 CCATCGCACATCATGTGCACACACCCCCCAGCCCCCTCGATCACCGGAACCCCAACGCCGTCGGT
453 CCATCGCACATCATGTGCGCACACCCCCCAGCCCCCCCGATCACCGGAACCCCAATGCCGCCGGT
* *
16949323 CAGGTTCTCCGGTGATGCTCCGGTGATGGTGCCCC-AGCGAAGAAAATTACGGCACCAGCACATG
518 CAGGTTCTCCGGTGATGCTCCGGTGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATG
* * * * *
16949387 CCCAAGCCCAGCATGTGCTGCTGCAACCCTTGGTCTAATCCGATCTTAGACTGGGAATCAACTCT
582 CCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCT
* *
16949452 GTATGCTTAGACAGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGC
647 GTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
* * * * **
16949517 TCAGTCGGCCAGAGGGGCGGGATGCGCCAGCCGGGGATCGGTCGGGTTTCCCTCTGCATGCTGTT
712 TCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC-GGTTCCCCTCTACATGCTGCC
* * * **
16949582 GATCCTGCTGCCACAACCCTTGATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
776 GATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * *
16949647 GCCAACCGATGAAACGAGCGGACGGACGGGCGGGCAGGCACTACGTCGGCCAGAGGGATGG
841 GCCAACCGACGAAACGAGCGGGCGGACGGGCGGGCAGGCACTACGCCGGCCAGAGAGATGG
* * **
16949708 GTTGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTG
1 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
* *
16949773 GCAATGCCATTTTTATGGCTTGTACATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
66 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
*
16949838 TGGCAAGACGATTCGTTTTCTATTTTTC
131 TGGCAAGACGACTCGTTTTCTATTTTTC
16949866 GGAAGGAGTT
Statistics
Matches: 4855, Mismatches: 607, Indels: 176
0.86 0.11 0.03
Matches are distributed among these distances:
888 192 0.04
889 4 0.00
890 352 0.07
891 404 0.08
892 268 0.06
893 2 0.00
894 38 0.01
895 339 0.07
896 10 0.00
897 1 0.00
898 389 0.08
899 299 0.06
900 969 0.20
901 31 0.01
902 429 0.09
903 244 0.05
904 104 0.02
905 176 0.04
906 223 0.05
907 337 0.07
908 7 0.00
909 1 0.00
910 36 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (901 bp):
GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTA
AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
TGCACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
TCGCACATCATGTGCGCACACCCCCCAGCCCCCCCGATCACCGGAACCCCAATGCCGCCGGTCAG
GTTCTCCGGTGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCG
AGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCTGTAT
GCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGTTCCCCTCTACATGCTGCCGATCC
TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGACGGGCGGGCAGGCACTACGCCGGCCAGAGAGATGG
Found at i:16948570 original size:26 final size:26
Alignment explanation
Indices: 16948541--16948593 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16948531 CTGGTCCGAT
16948541 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
16948567 CTTAGACTGGGAATGAATTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16948593 C
1 C
16948594 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16949468 original size:26 final size:26
Alignment explanation
Indices: 16949431--16949483 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16949421 CTAATCCGAT
*
16949431 CTTAGACTGGGAATCAAC-TCTGTATG
1 CTTAGACAGGGAATCAACTTC-GTATG
*
16949457 CTTAGACAGGGAATGAACTTCGTATG
1 CTTAGACAGGGAATCAACTTCGTATG
16949483 C
1 C
16949484 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACAGGGAATCAACTTCGTATG
Found at i:16950317 original size:26 final size:26
Alignment explanation
Indices: 16950288--16950340 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16950278 CCGGTCCGAT
*
16950288 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
16950314 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
16950340 C
1 C
16950341 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:16952116 original size:26 final size:26
Alignment explanation
Indices: 16952080--16952130 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
16952070 GATCCGATCA
*
16952080 TAGACTGGGAATCAAC-TCTGTATGCT
1 TAGACAGGGAATCAACTTC-GTATGCT
*
16952106 TAGACAGGGAATGAACTTCGTATGC
1 TAGACAGGGAATCAACTTCGTATGC
16952131 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.27
Consensus pattern (26 bp):
TAGACAGGGAATCAACTTCGTATGCT
Found at i:16953001 original size:26 final size:26
Alignment explanation
Indices: 16952972--16953024 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16952962 CTGATCCGAT
*
16952972 CTTAGACTGGGAATCAAC-TCTGTATG
1 CTTAGACAGGGAATCAACTTC-GTATG
*
16952998 CTTAGACAGGGAATGAACTTCGTATG
1 CTTAGACAGGGAATCAACTTCGTATG
16953024 C
1 C
16953025 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACAGGGAATCAACTTCGTATG
Found at i:16953891 original size:26 final size:26
Alignment explanation
Indices: 16953861--16953913 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16953851 CCGTACCGAT
*
16953861 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
16953887 CTTAGACTAGGAATGAATTCCTTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16953913 C
1 C
16953914 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16954792 original size:26 final size:26
Alignment explanation
Indices: 16954756--16954808 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16954746 CCGGTCTGAT
*
16954756 CTTAGACTGGGAATCAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
16954782 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
16954808 C
1 C
16954809 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:16955862 original size:899 final size:898
Alignment explanation
Indices: 16949860--16957329 Score: 10030
Period size: 902 Copynumber: 8.3 Consensus size: 898
16949850 TCGTTTTCTA
* * * *
16949860 TTTTTCGGAAGGAGTTTTGACCCCAAATTTGGTAGACATGATCCTTGTATTTTTTTTGGCATG-A
1 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* *
16949924 GCAAAAAAATTCAGCTAAAAAGTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
66 -CAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* * *
16949989 CATTTCAAAAACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAA-GGGG
130 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* * *
16950053 TGTGAGTTCTCGAGGTTTTATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCGCCCATC
195 TGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * * * * * *
16950118 GCACATCACGTGCGTAAACCCCCCACGGCCTCCCC-GATCTCCAGAACCCTAATGCAGCCGATCA
259 GCACATCATGTGCGCACA-CCCCC-CGGCC-CCCCTGATCACCGGAACCCCAATGCCGCCGGTCA
** * *
16950182 GGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCC
321 GGTTCTCCGACGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCC
* * * * * * * *
16950247 AAGCCTAGTATGTGCTGCCGTAACCTTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
386 GAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATCAACTCCGTA
* * * *
16950312 TGCTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCA
451 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCA
* * * * * ** * *
16950377 ACCGGTCAGAGGGGTGGGATGCGCAAGTCGAGGATCGACCGGGTCCCCCTCTCCGTGCTGCCGAT
516 GCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGCCGAT
* * ** * *
16950442 CCTGCTGTCGTAACCCTCGGTCTGGTCAGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCC
581 CCTACTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
*
16950507 AACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGC
646 AACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
**
16950572 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATGTCTTCATATTTCTACATGCCAATGCCATT
711 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATT
* *
16950637 TTTATGACTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAGGTGAAGTTTCATGGCAAGACGA
776 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* *
16950702 CTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCGAGG-TTTTTTAAAAT
841 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCG-GGATTTTTTAAAAT
** * * *
16950760 TTTTTCGGAAGGAGTTTTGTTCCCAAACCTGGTAGACGTGATCCTTGTATGTTTGTTGGCATGCG
1 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* *
16950825 CAAAACAATTCAGCTAAAAACTCCAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCT
66 CAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* *
16950890 ATTCCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGCGGT
131 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* * *
16950955 GTGAGTTCTCCATGTTTGATGAGGGATAGGGGCCATTTATAAGGGCCAAGTACCAGCACCCATCG
196 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCA-ATATAAGGGCCAAGTACCAGCACCCATCG
* * * *
16951020 CACATCATGTGCGCACACCCCCCAGCCCCCCTGATCATCGGAACCCCAACGCCGTCGGTCAGGTT
260 CACATCATGTGCGCACACCCCCCGGCCCCCCTGATCACCGGAACCCCAATGCCGCCGGTCAGGTT
* * *
16951085 CTCCGACGATGCTCCGATGATGGTGCCCTGACGAAGAAAATTACGGCACCAGCACATGCCCGAGC
325 CTCCGACGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGC
* * *
16951150 CCAGCATGTGCTGCTGCAACCCTCGGTCC-GATCCGATCTTAGACTGGGAGTCAATTCTGTATGC
390 CCAGCATGTGCTGCTGCAACCCTCGGTCCAG-TCCGATCTTAGACTGGGAATCAACTCCGTATGC
* * *
16951214 TTAGACAGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGTC
454 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGCC
* * * * * ** *
16951279 GGCCAGAGGGGCGGGATGCGCCAGTCGGGGGTCGGCCAGGTTTCCCTCTGCATGCTACCGATCCT
519 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGCCGATCCT
* * *
16951344 ACTGCCACAACGCTCGATCTGGTCTGATCTTATACTGGGAATGAACTCCGTATGCCTAAGCCAAC
584 ACTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * *
16951409 CGACGAAATGAGCGGGCGGACGGGCGAGCAGGCACTACGCCGGCCAGAGGGATGGGATGCGCAAG
649 CGACGAAACGAGCGGGCGGGCGGGC--G--GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
**
16951474 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCAT
710 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCAT
* * *
16951539 TTTTATGGCTTCTACATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAGG
775 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * *
16951604 ACTCATTTTCTATTTTTCACGATTTTTTAAACTTTTTACGGTTCGGGACTTTTTAAAAT
840 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAT
* * * *
16951663 TTTTTTGGAAGAAGTTTTGGCCCCAAACCTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCA
1 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
*
16951728 CAAAACAATTCAGCTAAAAACTCCAAGTGTACAAGA-TTTGTGACCATTTGAAAAAAGTGTCCCC
66 CAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* *
16951792 ATTCCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGCGGT
131 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* * * *
16951857 ATGAGTTCTCCACGTTTGATGAGGGATAGGGGCCATTTATAAGGGCCAAGTACCAGCACCCATCG
196 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCA-ATATAAGGGCCAAGTACCAGCACCCATCG
** * * *
16951922 CACATCATGTGCGCACACCCCCCAACCCCCCTGATCACCGGAACCCCAACGCTGTCGGTCAGGTT
260 CACATCATGTGCGCACACCCCCCGGCCCCCCTGATCACCGGAACCCCAATGCCGCCGGTCAGGTT
* * * *
16951987 CT-C--CGA-----C---GATGGTG-CCCTAGCGAAGAAAATTGCGGCACCAGCACATGCCCAAG
325 CTCCGACGATGCTCCGGTGATGGTGCCCCGA-CGAAGAAAAATACGGCACCAGCACATGCCCGAG
* * *
16952040 CCCAGCATGTGCTGCTGCAACCCTCGGTGC-GATCCGATCATAGACTGGGAATCAACTCTGTATG
389 CCCAGCATGTGCTGCTGCAACCCTCGGTCCAG-TCCGATCTTAGACTGGGAATCAACTCCGTATG
* * * *
16952104 CTTAGACAGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGAGCGCTCAGT
453 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGC
* * * **
16952169 CGGCCAGAGGGGCGGGATGCACCAGCCAGGGATCGGTCGGGTTGCCCTCTGCATGCTGCCGATCC
518 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGCCGATCC
* * *
16952234 TACTACCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
583 TACTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
16952299 CCGACGAAACGA----GCGGGCGGGCGGGCACTATGCTGGCCAGAGAGACGGGATGCGCAAGCCG
648 CCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
** *
16952360 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCATGTCTTCATATTTCTACATACCAATGCCATTTT
713 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTT
* * *
16952425 TATGACTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAGGTGAAGTTTCATGGCAAGATGACT
778 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * **
16952490 CGTTTTCGATTTTCCATAATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAT
843 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAT
** * * *
16952546 TTTTTCGGAAGGAGTTTTGTTCCCAAACCTGGTAGACGTGATCCATGTATGTTTGTTGGCATGCA
1 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* *
16952611 CAAAACAATTCAGCTAAAAACTCCAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCT
66 CAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* *
16952676 ATTAT-AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATATCAAATGCTCTTTAAGGTGG
131 ATT-TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* * * *
16952740 TGCGAGTTCTCCATGTTTGATGAGGGATAGGGGCCATTTATAAGGGCCAAGTACCAGCACCCATC
195 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCA-ATATAAGGGCCAAGTACCAGCACCCATC
** * *
16952805 GCACATCATGTGCGCACACCCCCTAG-CCCCCTGATCACCGGAACCCCAACGTCGCCGGTCAGGT
259 GCACATCATGTGCGCACACCCCCCGGCCCCCCTGATCACCGGAACCCCAATGCCGCCGGTCAGGT
* * * * *
16952869 TCTTCGGCGAAGCTCCGGTGATGGTGCCCCGACGAAGAAAATTACGGCACCAGTACATGCCCGAG
324 TCTCCGACGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAG
* * * *
16952934 CCCAGCATGTGCTACTGCAACCCTCTGT-CTGATCCGATCTTAGACTGGGAATCAACTCTGTATG
389 CCCAGCATGTGCTGCTGCAACCCTCGGTCCAG-TCCGATCTTAGACTGGGAATCAACTCCGTATG
* * * *
16952998 CTTAGACAGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGTGCTCAGT
453 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGC
* * * * * * *
16953063 CGGCCAGAGGGGCGAGATGCGCCAGCCGGGGATCGGCCAGGTTCCCCTTTGCATGCTACCGATCC
518 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGCCGATCC
* *
16953128 TGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
583 TACTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
16953193 CTGACAAAATGAGCGGGCGAACGGGCGGGCAGGCACTACGCCGGCCAGAGGGATGGGATGCGCAA
648 CCGACGAAACGAGC-GG-G--CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
** *
16953258 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTTCCAATGCCA
709 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
* * *
16953323 TTTTTATGGCTTGTACATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGAT
774 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * * *
16953388 GACTCGTTTTCTATTTTTCACCATTTTTAAAAGTTTTTGCGGTTCAGGATTTTTTAAAAT
839 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAT
* * * * *
16953448 TTTTTTGGAAGGATTTTTGGCCCCAAACATGGTAGACATGATCCTTGTATTTTTTTTGGCATGCA
1 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* *
16953513 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTC
66 CAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
*
16953578 ATTTCAGACACTTTACTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
131 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
16953643 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
196 GTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * ** *
16953708 CACATCATGTGCGCACACCGCCCTGGCCCCCCCGATCGTCGGAA-CCCAATGCCCCCGGTCAGGT
260 CACATCATGTGCGCACACC-CCCCGGCCCCCCTGATCACCGGAACCCCAATGCCGCCGGTCAGGT
*
16953772 TCTCCGACGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAA
324 TCTCCGACGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAG
* *
16953837 CCCAG-A-ATG-TGCTG-----C-C-GT--A--CCGATCTTAGACTGGGAATGAACTCCGTATGC
389 CCCAGCATGTGCTGCTGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATCAACTCCGTATGC
* * * *** * * * *
16953888 TTAGACTAGGAATGAATTCCTTATGCCTAAGTCAACCCGTAAAACGAGGGTACGGGCACTCAGCC
454 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGCC
** * *
16953953 GGCCAGAGGGGCGGGATGCGCAAGATGAGGATCGGTCGGGTCCCCTTCTGCATGCTGCCGATCCT
519 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGCCGATCCT
* * *
16954018 GCTACCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAAC
584 ACTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* *
16954083 CGACGAAACGA--------GTGGGCGGGCACTACGCCGGCCAGAGAGACGGGTTGCGCAAGCCGT
649 CGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
* * *
16954140 GGATTGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACATGCCACTAGCCATTTT
714 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAAT-GCCATTTT
* *
16954205 TATGGCTTGTAAATTCATACAATGGTCCCCTAGGCCTTCACGTGAAGTTTCATGGCAAGACGACT
778 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* *
16954270 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACAGTTCGAGATTTTTTAAAAT
843 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAT
* ** * * * *
16954326 TTTTTCGGAAGGAGTTTTGGCCCTAAACTTTTATAAAAGTGATCCCTGTATTTTTTTTTTGGCAT
1 TTTTTCGGAAGGAGTTTTGGCCCCAAAC-TTGGTAGACGTGATCCTTGTA--TTTTTGTTGGCAT
* * *
16954391 GCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGGCCATTTGAAAAAAGTGTC
63 GCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
*
16954456 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTACAATCTCAAATGCTCTTTAAGGG
128 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
*
16954521 GGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
193 GGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * *
16954586 TCGCACATCATGTGCGCACACCCCCCCGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAG
257 TCGCACATCATGTGCGCACACCCCCCGGCCCCCCTGATCACCGGAACCCCAATGCCGCCGGTCAG
* * ** * *
16954651 GTTCTTCGATGATGCTCCGACGATGGTGCCCCGATGAAGAAAAA-A-GTAGCACCAACACATGCC
322 GTTCTCCGACGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATACG--GCACCAGCACATGCC
* * * * * *
16954714 TGAGCCCAGCATGTGCTGCTGCAATCCACGGCCCGGTCTGATCTTAGACTGGGAATCAACTCCGT
385 CGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATCAACTCCGT
* * * *
16954779 ATGCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGAGTGGGCGCTC
450 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTC
* * *
16954844 AGCCGGCCAGAAGGGCAGGATGTGCAAGCCGGGGATCGGTCGGGTCCCCCTCT--ATGTCCTGCC
515 AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATG--CTGCC
* *** **
16954907 GATTCTACTATGACAACTTTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
578 GATCCTACTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * *
16954972 GCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGAGCACTACGCCAGCCAGAGTGATGGGATG
643 GCCAACCGACGAAACGAGCGGGCGGGCGGGC--G-G-GCACTACGCCGGCCAGAGAGACGGGATG
* * * *
16955037 CGCAAGCCATGGATCGATAGGGTGGTTGGTGGGTTTAGGCACATCTTCATATTTCTTCGTGCCAA
704 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAA
**
16955102 TGCCATTTTGGTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
769 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * * * * *
16955167 AAGATGACTCATTTTTTATTTTACACAATTTTTGAAACTTTTTATC-GTTAGGGATTTTTTAAAA
834 AAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA-CGGTTCGGGATTTTTTAAAA
16955231 T
898 T
* * * * *
16955232 TTTTTCGCAAGGAGTTGTGGCCCCAAACTTGGTAGACATGATCCTTTTATTTTTCTTGGCATGCA
1 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* *
16955297 TAAAACAATTCAGCTAAAAACTCGCAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
66 CAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* * *
16955362 ATTTCAGAGACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATACTCTTTAAGGGGGT
131 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* * *
16955427 GTGAGTTCTCGAGGTTTGATGAGAGACAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCAC
196 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * * * *
16955492 ACATCATGCGCGCAAACCCCCCGGCCTCCC-AATCACTGGAACCCCAATGCTGCCGGTCAGGTTC
261 ACATCATGTGCGCACACCCCCCGGCCCCCCTGATCACCGGAACCCCAATGCCGCCGGTCAGGTTC
** * * * * *
16955556 TCCGGTGATGCTCCGGTGATCGTG-CCCGACAAAGAAAAATGCAGCCCCAGCACATGCCCGAGCC
326 TCCGACGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCC
* * * * * *
16955620 CAGCATGTGCTGCCGTAACCCTTGGTCTAGTCCGATCTTAGGCTGGGAATGAACTCCGTATGCTT
391 CAGCATGTGCTGCTGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATCAACTCCGTATGCTT
* * *
16955685 AGAGTGGGAATGAACT-CGTATGCCTAAGTCAACCCACGAAACGAGTGTGC-AGGCGCTCAGCCT
456 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGA-GCGCTCAGCCG
* * *
16955748 GCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTACTTGCTGCCGATCCTA
520 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGCCGATCCTA
* * * * *
16955813 CTGCCGCAACCCTCGATCCGAT-TCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAA
585 CTGCCACAACCCTCGGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * * *
16955877 TGATGAAACGA----GCAGGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATACGCAAGTCAT
649 CGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
* * * *
16955938 GGATCAATAGGGTGGTAGGTGGGATTCGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTT
714 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTT
* *
16956003 ATGGCTTGTAAATTCATACAAAGGTCCCTTAAGCCCTCACGTGAAGTTTCATGGCAAGACGACTC
779 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * * * *
16956068 GTTTCCTATTTTTCACGATTTTCGAAACTCTTTGCGGTTCTGGATTTTTTAAAA-
844 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAT
* * *
16956122 TTTTTCTGGAAGGACTTTTGGTCCCAAAATTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
1 TTTTTC-GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
* *
16956187 ATGAAAA-AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCC
65 A-CAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
*
16956251 CCATTTCAGACACTTTAATGGCTACTGGCAGCTAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
129 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* * * *
16956316 GAGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATGTAAGGGCCAAGTACCAACAGCCAT
194 GTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * * * * *
16956381 TGCACATCATGTTCGCACACCCCCCGGCCCCCCTGATCATCGGAACCCGAATTCCGCCGATCAAG
258 CGCACATCATGTGCGCACACCCCCCGGCCCCCCTGATCACCGGAACCCCAATGCCGCCGGTCAGG
* * ** * *
16956446 TTCTCCGACGATACTCTGACGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCCA
323 TTCTCCGACGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGA
* * * * *
16956511 GCCCAGCATGTGCTG-TCACAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCTGTAT
388 GCCCAGCATGTGCTGCT-GCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATCAACTCCGTAT
* * * * *
16956575 GGTGAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGAGTGCTCAG
452 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAG
* * * * * * *
16956640 CCGGCCAGAGAGGCGAGATGCGCAAGCCGGGAATCGATTGGGTCCCCCTCAGCATGCTGCCAATC
517 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGCCGATC
* ** * *
16956705 CTGCTGCTGCAACCCTCGAT-TCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
582 CTACTGCCACAACCCTCGGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * *
16956769 AACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCAGCCAGAGAAACGGGATGCACAAGC
646 AACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * * *
16956834 CGTGGATCGATAGGGTGATAGGTAGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATT
711 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATT
* *
16956899 TTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGA
776 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* ** * *
16956964 --C----TC-ATTTTTCATGATTTTTGAAACTTTTTGTGGTTCAGGATTTTTCAAAAT
841 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAT
* * *
16957015 TTTTTTGAAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
1 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* *
16957080 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCC
66 CAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* *
16957145 ATTTCAGACACTTTAATGGCTACTGACAGCAAACCTGTAATATCTCAAATGCTCTTTAAGGGGGT
131 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
*
16957210 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCCC
196 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * ** *
16957275 ATATCATGTGCGCACACCACCCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGC
261 ACATCATGTGCG--CA-CA-CCCCCCGGCCCCCCTGATCACCGGAACCCCAATGC
16957330 TTAGACTGGG
Statistics
Matches: 5835, Mismatches: 634, Indels: 207
0.87 0.09 0.03
Matches are distributed among these distances:
877 91 0.02
878 142 0.02
879 15 0.00
880 22 0.00
881 301 0.05
882 1 0.00
883 337 0.06
884 179 0.03
885 1 0.00
886 3 0.00
887 9 0.00
889 208 0.04
890 11 0.00
891 725 0.12
892 307 0.05
893 58 0.01
894 391 0.07
895 409 0.07
896 1 0.00
897 1 0.00
898 6 0.00
899 645 0.11
900 288 0.05
901 125 0.02
902 745 0.13
903 559 0.10
904 14 0.00
905 15 0.00
906 142 0.02
907 84 0.01
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (898 bp):
TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
CAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
ACATCATGTGCGCACACCCCCCGGCCCCCCTGATCACCGGAACCCCAATGCCGCCGGTCAGGTTC
TCCGACGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCC
CAGCATGTGCTGCTGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATCAACTCCGTATGCTT
AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCGG
CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGCCGATCCTAC
TGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
ACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTAT
GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAT
Done.