Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 92 of 195
Found at i:16958236 original size:26 final size:26
Alignment explanation
Indices: 16958200--16958252 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16958190 CCGATCAGGT
*
16958200 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16958226 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16958252 C
1 C
16958253 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16958447 original size:12 final size:12
Alignment explanation
Indices: 16958430--16958454 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
16958420 ACCGACGAAA
16958430 CGAGCGGGCGGG
1 CGAGCGGGCGGG
16958442 CGAGCGGGCGGG
1 CGAGCGGGCGGG
16958454 C
1 C
16958455 ACTATGCCGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.28, G:0.64, T:0.00
Consensus pattern (12 bp):
CGAGCGGGCGGG
Found at i:16959124 original size:26 final size:26
Alignment explanation
Indices: 16959085--16959145 Score: 90
Period size: 26 Copynumber: 2.4 Consensus size: 26
16959075 CTCTCAGTTC
*
16959085 GCTCCG-AT-CTTAGATTGGGAATGA
1 GCTCCGTATGCTTAGACTGGGAATGA
16959109 GCTCCGTATGCTTAGACTGGGAATGA
1 GCTCCGTATGCTTAGACTGGGAATGA
*
16959135 ACTCCGTATGC
1 GCTCCGTATGC
16959146 CTAAGTCAAC
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
24 6 0.18
25 2 0.06
26 25 0.76
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (26 bp):
GCTCCGTATGCTTAGACTGGGAATGA
Found at i:16960615 original size:884 final size:888
Alignment explanation
Indices: 16957326--16960959 Score: 4521
Period size: 893 Copynumber: 4.1 Consensus size: 888
16957316 CGAAACCCCA
* * * ** * *
16957326 ATGCTTAGACTGGGAATGAACTCCGTATGCCTACGTCGACCCATGAAACGAGCGTGCGGGTGCTC
1 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTTTACGGGCGCTC
* * * * * ** * *
16957391 AGTCGGCCAGAAGGGTGGGATGCGCAAGCTGGGGATGGGCCGGGTCCCCCT-TTGGATGCTGTCG
66 AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACG-TGCAGCCG
* ** * * *
16957455 ATCCTACTGCTGCAACCCTCAG-TCCAATTCGATCTTAGACTGGGAATGAACTCCGTATTCCTAA
130 ATCCTACTGCCGCAACCCTCAGATCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAA
* * * * * *
16957519 GCCAATCGGCGGAAC-GAGCGGGCGGGCGGGTGGGCACTGCGTCGGCCAGAGAGGCGGGATGCGC
195 GCCAACCGACGAAACAGAGCGGGCGGGC----GGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * * *
16957583 AAGTCATGGATTGATAGGGTGGTAGGTTGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGC
256 AAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* * * *
16957648 CATTTCTGTGGCTTGTAAATTTATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
321 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTAAAGTTTCATGGCAAG
* * * * *
16957713 ACGACTCGTTTTTTATTTTTCACAATTCTCGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTT
386 ACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTT
* * *
16957778 TTCGAAAGGTGTTTTGGCCCCAAACTTGGTAGACATGATCTTTGTATTTTTGTTGGCATGCGCAA
451 TTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAA
* *
16957843 AAAACTTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
516 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
16957908 TCAGACACTTTAATGGCTACTGACAGCAAACCTGTAATATCTCAAATGCTCTTTAAGGGGGTGTG
581 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
16957973 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
646 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* **
16958038 ATCATGTGCGCACACCCCCCGGCCCCCCCGA-CGTCGGAACCCCAATGCCGTTGGTCAGGTTCTC
711 ATCATGTGCGCACACCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * *
16958102 CGATGATGCTCCGATGATGGTGCCCCGGTGAAGAAAAATGCGACACCA-TACATGCCCGAGCCCA
776 C----A-G--CC---GATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCA
* * * * *
16958166 GCATGTGCTACCGTAACCCTC-GGTCCGATCAGGTCTTAGACTGGGAATGAACTCTGT
831 GCATGTGCTACCGCAACCCTCAGTTCCGCTCAGATCTTAGACTGGGAATGAACTCCGT
* * * * *
16958223 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAACGAGTGTGCAGGCACTC
1 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTTTACGGGCGCTC
* * ** ** * *
16958288 AGTCGGCCAGAGGGGCGTGATGCGCAAGATGGGGATCAACCGGGTCCCCCTCTACATGCTGCCGA
66 AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCAGCCGA
* * * * * **
16958353 TCCTGCTGCCGCAACCCT-TGATCTGGTCTGATCTTAGACTTGGAATGAACTCTGTATATCTAAG
131 TCCTACTGCCGCAACCCTCAGATCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAG
* * * *** * *
16958417 CGAACCGACGAAACGAGCGGGCGGGCGAGCGGGCGGGCACTATGCCGATTAGAGACACGGGATGT
196 CCAACCGACGAAAC-A--GAGC--G-G-GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
* * *
16958482 GCTAGCCAGGGATCGATAGGGTGGTTGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
254 GCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
*
16958547 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
319 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTAAAGTTTCATGGCA
* *
16958612 AGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCCGTTAGGGATTTTTTAAAATT
384 AGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATT
* * * * * *
16958677 TTTTCGAAAGGAGTTTT-GCCCAAAACTTGGTAGACATGATCCTTGTATTTTTTTTAGTAAGCAT
449 TTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCAC
* * * *
16958741 AAAATAATTCAGCTAAAAAATTGAAGTTTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
514 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
*
16958806 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAATTCTCAAATGCTCTTTAAGGGGGTG
579 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * * * * * *
16958871 TGATTTCCCGAGGTTTGATGAGGGATAGGGGACCAACATAAGAGCCAAGTACCAACACCCATTGC
644 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * * *
16958936 ACATCATGTGCGCACACCCCCTCCG-GCCCCCCAATCGTCGGTACCCCAGGTGCCGCCGGTTAGG
709 ACATCATGTGCGCACA-CCCC-CCGACCCCCCCGATCGTCGGAACCCCA-ATGCCGCCGGTCAGG
* * * *
16959000 TTCT-CTGACGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCTCAACATG
771 TTCTCCAGCCGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATG
* * * * * *
16959064 TGCTGCCGTAACTCTCAGTT-CGCTCCGATCTTAGATTGGGAATGAGCTCCGT
836 TGCTACCGCAACCCTCAGTTCCGCTCAGATCTTAGACTGGGAATGAACTCCGT
* *
16959116 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTT-CGGCCGCT
1 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG-TTTACGGGCGCT
* * * * *
16959180 CAGCCGGGCAGAGGGGTGGGATGCGAAAGTCGAGGATCGGCCGGG-CCCCCTCTACGTGCTA-CC
65 CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGC-AGCC
* * * * *
16959243 GATCCTACTGCTGCAACCCTC-GATCTGGTCTGATCTTAGACTGGGAATGGACT-TCATATGCCT
129 GATCCTACTGCCGCAACCCTCAGATCCGGTCCGATCTTAGACTGGGAATGAACTCT-GTATGCCT
* * * *
16959306 AAGCCAACCGACAAAATGAGCAGGCAGGCGGGCAGGCGGGCACTACACCGGCCAAAGAGACGGGA
193 AAGCCAACCGAC-GAA--A-CA-G-A-GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGA
* * * *
16959371 TGCGCAAGCCATGGATCGATAGAGTGGTAGGTGGGTTTAGGCACATCTTAATATTTCTACGTGCC
251 TGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
* * * *
16959436 AATGCCATTTTTATGGCTTGTAAATTCATATAGTGGTCCCTTAAGCCTTCTCGTAAAGGTTCATG
316 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTAAAGTTTCATG
* * *
16959501 GCAAGACGACTCGTTTTCTATTTTT-AGCGATTTTTGAAACTTTTTGCGATTCAGGATTTTTTAA
381 GCAAGACGACTCGTTTTCTATTTTTCA-CGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAA
* * * * * * *
16959565 AATTTTTTTGGAAGGTGTTTTGGCCCCAATCTAGGTAGACATGATCCTTGTTTTTTTTTTGGCAT
445 AATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCAT
** * *
16959630 GCATGAAAAACTTCAGCTAAAAACTCGAAGTATACAAGATTTTGTGACCATTTGAAAAAAGTGTC
510 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* * *
16959695 CTCATTTCGGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGTG
575 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* *
16959760 GGTGTGAGTTCTCGAGGTTTGATGACGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCATCCA
640 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * * *
16959825 TTGCACATCATGTGCGCACA-CCACCGACCCCCCCGATCATTGGAACCCCAATGCCGCCGGTCAG
705 TCGCACATCATGTGCGCACACCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAG
* * * *
16959889 GTTCTCCAG-CGATGGTGCCCCGGTGAAGAGAAATACGGCACTAGCACAAGCTCGAGCCCAGCAT
770 GTTCTCCAGCCGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCAT
* *
16959953 GTACTACCGCAACCCTC-GTTCCGGCTC-GATCTGAGACTGGGAATGAACTCCGT
835 GTGCTACCGCAACCCTCAGTTCC-GCTCAGATCTTAGACTGGGAATGAACTCCGT
* * * *
16960006 ATGCTTAGTCTGGGAATGAACTCTGTATGCCTAAGTCAACCTACGAAACGAGTTTACGGGTGCTC
1 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTTTACGGGCGCTC
* * * * * **
16960071 AGCCGGCCAGATGGGCGGGATGCGCAAGCCGGGGATTGGTCGGGTCTCCCTCTATGTGCAGATGA
66 AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCAGCCGA
* * *
16960136 TCCTGCTGCCACAACCCTCAG-TCCGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAG
131 TCCTACTGCCGCAACCCTCAGATCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAG
* **
16960200 CCAACCGACGAAACA-AGCGGGCGTGCGGGCACTACGCCGGTTAGAGAGACGGGATGCGCAAGCC
196 CCAACCGACGAAACAGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
*
16960264 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
261 ATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* ** * *
16960329 TTGTATCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACGTAAAGTTTCATGGCAAGACAAC
326 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTAAAGTTTCATGGCAAGACGAC
* * * * *
16960394 TCGTTTTCTATTTTTCATGATTTTGGAAAACTTTTTGCGGTCCGGGATTTTTAAAAATTTTTTTG
391 TCGTTTTCTATTTTTCACGATTTTCG-AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCG
* * *
16960459 GAAGGACTTTTGGCCCCAATCTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
455 AAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* *
16960524 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGTCCATTTGAAAAAAGTGTCCTCATTTCAG
520 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
16960589 ACACTTTAATGGCTACTGGCAGCAAACCTGCAAAATATCAAATGCTCTTTAAGGGGGTGTGAGTT
585 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * * * *
16960654 GTTGAGGTTTGATGGGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACAACA
650 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * *
16960719 TGTGTGCACACCCCCCCCGACCCCCCCGATCGTCGAAACCCTAATGCCGTCGGTCAGGCTCTCCG
715 TGTGCGCACA--CCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT-C-
* * *
16960784 ACGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGC
776 -C-A-G---C--CGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGC
* * *
16960849 ATGTGCTGCCGCAACCCTCAG-TCCAG-TCTA-ATTTTAGACTGGGAATGAACTCTGT
833 ATGTGCTACCGCAACCCTCAGTTCC-GCTC-AGATCTTAGACTGGGAATGAACTCCGT
* * *
16960904 ATGCTTAAACTGGAAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGTTTA
1 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTTTA
16960960 TGGCTACTGG
Statistics
Matches: 2367, Mismatches: 314, Indels: 111
0.85 0.11 0.04
Matches are distributed among these distances:
883 180 0.08
884 283 0.12
887 44 0.02
888 2 0.00
889 5 0.00
890 202 0.09
891 104 0.04
892 331 0.14
893 385 0.16
894 5 0.00
895 3 0.00
896 4 0.00
897 172 0.07
898 142 0.06
899 1 0.00
900 234 0.10
901 231 0.10
902 16 0.01
903 16 0.01
904 1 0.00
905 6 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (888 bp):
ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTTTACGGGCGCTC
AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCAGCCGA
TCCTACTGCCGCAACCCTCAGATCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAG
CCAACCGACGAAACAGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
ATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTAAAGTTTCATGGCAAGACGAC
TCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGA
AAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
GTGCGCACACCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAGCC
GATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCA
ACCCTCAGTTCCGCTCAGATCTTAGACTGGGAATGAACTCCGT
Found at i:16961269 original size:360 final size:361
Alignment explanation
Indices: 16960597--16961311 Score: 1056
Period size: 360 Copynumber: 2.0 Consensus size: 361
16960587 AGACACTTTA
* *
16960597 ATGGCTACTGGCAGCAAACCTGCAAAATATCAAATGCTCTTTAAGGGGGTGTGAGTTGTTGAGGT
1 ATGGCTACTGGCAGCAAACCTGCAAAATATAAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGT
* * * *
16960662 TTGATGGGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACAACATGTGTGCA
66 TTGATGAGGGATAGGGGGCCAATATAACGGCCAAGTACCAGCACCCATCGCACAACATGTGCGCA
* ** * *
16960727 CACCCCCCCCGACCCCCCCGATCGTCGAAACCCTAATGCCGTCGGTCAGGCTCTCCGACGATGCT
131 CA-CCCCCCCGACCCCCCCGATCGTCGAAACCCCAATGCCACCGATCAGGCTCCCCGACGATGCT
* *
16960792 CCGGCGATGGTGCCCCGATGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
195 CCGGCGATGGTGCCCCGACGAAGAAAAATACAGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
* * * * *
16960857 CCGCAACCCTCAGTCCAGTCTAATTTTAGACTGGGAATGAACTCTGTATGCTTAAACTGGAAATG
260 CCACAACCCTCAGTCAAGTCTAATCTTACACTGGGAATGAACTCCGTATGCTTAAACTGGAAATG
* *
16960922 AACTCTGTATGCCTAAGTCAACCCACGAAACGAGTTT
325 AACTCCGTATGCCTAAGTCAACACACGAAACGAGTTT
* *
16960959 ATGGCTACTGGCAGCAAACCTGTAAAATTTAAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGT
1 ATGGCTACTGGCAGCAAACCTGCAAAATATAAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGT
*
16961024 TTGATGAGGGATAGGGGGCCAATATAACGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
66 TTGATGAGGGATAGGGGGCCAATATAACGGCCAAGTACCAGCACCCATCGCACAACATGTGCGCA
* * * * * *
16961089 CA-CCCGCCGGCCCCCCCGATCGTCGAAACCCCAATTCCACCGATCAGGTTCCCCGGCGTTGCTC
131 CACCCCCCCGACCCCCCCGATCGTCGAAACCCCAATGCCACCGATCAGGCTCCCCGACGATGCTC
* * ** * *
16961153 CGGTGATGGTGCCTCGACGAAGAAAAATATGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGT
196 CGGCGATGGTGCCCCGACGAAGAAAAATACAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
* * *
16961218 CACAACCCTC-GATCAAGTCTGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
261 CACAACCCTCAG-TCAAGTCTAATCTTACACTGGGAATGAACTCCGTATGCTTAAACTGGAAATG
16961282 AACTCCGTATGCCTAAGTCAACACACGAAA
325 AACTCCGTATGCCTAAGTCAACACACGAAA
16961312 TGAGCGCACG
Statistics
Matches: 314, Mismatches: 38, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
359 1 0.00
360 190 0.61
362 123 0.39
ACGTcount: A:0.27, C:0.28, G:0.25, T:0.21
Consensus pattern (361 bp):
ATGGCTACTGGCAGCAAACCTGCAAAATATAAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGT
TTGATGAGGGATAGGGGGCCAATATAACGGCCAAGTACCAGCACCCATCGCACAACATGTGCGCA
CACCCCCCCGACCCCCCCGATCGTCGAAACCCCAATGCCACCGATCAGGCTCCCCGACGATGCTC
CGGCGATGGTGCCCCGACGAAGAAAAATACAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
CACAACCCTCAGTCAAGTCTAATCTTACACTGGGAATGAACTCCGTATGCTTAAACTGGAAATGA
ACTCCGTATGCCTAAGTCAACACACGAAACGAGTTT
Found at i:16961277 original size:26 final size:26
Alignment explanation
Indices: 16961241--16961293 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16961231 CAAGTCTGAT
16961241 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
16961267 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
16961293 C
1 C
16961294 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:16962062 original size:26 final size:26
Alignment explanation
Indices: 16962033--16962088 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
16962023 CCAGTTCGAT
16962033 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
16962059 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
16962085 CTTA
1 CTTA
16962089 AATCAACCCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16969615 original size:470 final size:469
Alignment explanation
Indices: 16968783--16969651 Score: 1397
Period size: 470 Copynumber: 1.9 Consensus size: 469
16968773 TGGTCCAGTG
* * * *
16968783 TGATCTTATACTGGGAATGAACTCTGTATGCCGAAGCCAACCGACGAAATAAGCGGGCGGGCAGG
1 TGATCTTAGACTGGGAATGAACTCTGTAAGCCGAAGCCAACCGACGAAACAAGCGGGCGGACAGG
* *
16968848 CGGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGT
66 CGGGCGGGCACTATACCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGAT
* * * *
16968913 GGGTTTAGGCACATCTTCATAATTCTGCATGCAATGCCTTTTTTATGGCTTGTAAATTCAAACAA
131 GGGTTTAGGCACATCATCATAATTCTACATGCAATGCCATTTTTATGGCTTCTAAATTCAAACAA
* *
16968978 TGGTCCCTTAAGCCTTGACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTT
196 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTCCATGATTT
* * *
16969043 TCAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTG
261 TCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
*
16969108 TTAGACGGGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTA
326 TTAGACGGGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTA
16969173 CAAGATTTTTTTTGGCATGTGTTAGACGGGTTCCCCTCTGCATGCTGCCAATCCTGCTGCCGCAA
391 CAAGATTTTTTTTGGCATGTGTTAGACGGGTTCCCCTCTGCATGCTGCCAATCCTGCTGCCGCAA
16969238 CCCTCAGTTCGGTC
456 CCCTCAGTTCGGTC
* *
16969252 TGATCTTAGACTGGGAATGAA-TTTCGTAAGCCTAAGCCAACCGACGAAACAAGCGGGCGGAC-G
1 TGATCTTAGACTGGGAATGAACTCT-GTAAGCCGAAGCCAACCGACGAAACAAGCGGGCGGACAG
* *
16969315 GACGGGCGGGCACT-TCACCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
65 G-CGGGCGGGCACTAT-ACCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTA
* * *
16969379 GATGGGTTTAGGCACATCATCATATTTCTACGTGCCAATGCCATTTTTATGGCTTCTAAATTCAT
128 GATGGGTTTAGGCACATCATCATAATTCTACATG-CAATGCCATTTTTATGGCTTCTAAATTCAA
*
16969444 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTGATGGCAAGACGACTCATTTTCTATTTTCCATG
192 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTCCATG
**
16969509 ATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
257 ATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
* *
16969574 CTTGGTT-GATC-TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAC
322 CTT-GTTAGA-CGGGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAA
16969637 AGTGTACAAGATTTT
385 AGTGTACAAGATTTT
16969652 GTTACCATTT
Statistics
Matches: 366, Mismatches: 28, Indels: 11
0.90 0.07 0.03
Matches are distributed among these distances:
468 5 0.01
469 139 0.38
470 218 0.60
471 4 0.01
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.31
Consensus pattern (469 bp):
TGATCTTAGACTGGGAATGAACTCTGTAAGCCGAAGCCAACCGACGAAACAAGCGGGCGGACAGG
CGGGCGGGCACTATACCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGAT
GGGTTTAGGCACATCATCATAATTCTACATGCAATGCCATTTTTATGGCTTCTAAATTCAAACAA
TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTCCATGATTT
TCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
TTAGACGGGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTA
CAAGATTTTTTTTGGCATGTGTTAGACGGGTTCCCCTCTGCATGCTGCCAATCCTGCTGCCGCAA
CCCTCAGTTCGGTC
Found at i:16969995 original size:47 final size:47
Alignment explanation
Indices: 16969926--16970020 Score: 145
Period size: 47 Copynumber: 2.0 Consensus size: 47
16969916 ACTTGCCCGA
* * * *
16969926 GCCCAGCATGTGCTGCCACAACCCTTGGTCCGGTCTGATCTTAGACT
1 GCCCAGCATGTGCTACCACAACCCTCGATCCGGTCCGATCTTAGACT
*
16969973 GCCCAGCATGTGCTACCGCAACCCTCGATCCGGTCCGATCTTAGACT
1 GCCCAGCATGTGCTACCACAACCCTCGATCCGGTCCGATCTTAGACT
16970020 G
1 G
16970021 GGAATGAACT
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 43 1.00
ACGTcount: A:0.18, C:0.36, G:0.23, T:0.23
Consensus pattern (47 bp):
GCCCAGCATGTGCTACCACAACCCTCGATCCGGTCCGATCTTAGACT
Found at i:16970053 original size:26 final size:26
Alignment explanation
Indices: 16970017--16970067 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
16970007 CCGATCTTAG
*
16970017 ACTGGGAATGAACTCCATATGCCTAC
1 ACTGGGAATGAACTCCATATCCCTAC
16970043 ACTGGGAATGAACTCCATATCCCTA
1 ACTGGGAATGAACTCCATATCCCTA
16970068 AGTCAACCCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (26 bp):
ACTGGGAATGAACTCCATATCCCTAC
Found at i:16971791 original size:26 final size:26
Alignment explanation
Indices: 16971753--16971805 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16971743 CCGATCTGAT
* *
16971753 CTTAGACTGGGAATGAACTGCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
16971779 CTTAGATTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16971805 C
1 C
16971806 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16973146 original size:897 final size:891
Alignment explanation
Indices: 16969973--16984354 Score: 16705
Period size: 896 Copynumber: 16.1 Consensus size: 891
16969963 ATCTTAGACT
* * * *
16969973 GCCCAGCATGTGCTACCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCATATG
1 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
16970038 CCTACACTGGGAATGAACTCCATATCCCTAAGTCAACCCACAAAACAAGCGTGCCGGG-GCTCAG
66 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG-CGGGCGCTCAG
* * * * * * * * * *
16970102 CCGGCCAAAGGGGTGGGAGGCGTAAGTCGGGGATCAGTTGGGTCTCCCTCTGTGTGCTTTCGATC
130 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATC
* * * * * * *
16970167 CTACTACAGTAACCC-TCGATCCGGTGCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCC
195 CTGCTGCCGCAACCCTTAG-TCCGATCCGATCTTAGACTGGGAATGAACTC-GTATGCCTAAGCC
16970231 AACCGACGAAACGA--------GCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
258 AACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
*
16970288 CGTGGATCGATAGGGTGGTAGGT-GGTTTAGGCACATCTTCATATTTCTGCGTGCC-ATACCA-T
323 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATT
* * * * *
16970350 TTTATGGCTTGTAAATTCAAACAATGGTCCCTCAAGCCTTCAATGTGAAGTTTCATGGTAAGACT
388 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC-ACGTGAAGTTTCATGGCAAGACG
** ** * * *
16970415 A-TCG-TTTCTA-TTTTCAACAGATTTCAAACTTTTTACGGTTCAGGATATTTTAAAATTTTTTC
452 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
* * * * *
16970477 GGAAGGAGTTTTGGTCCCAAACTTGGTAGATGGGATCCTTGTATTATTGTTGGCATGCAAAAAAA
517 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* **
16970542 AATTCAGCTAAAAACTCAAAGTGTTTAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
582 AATTCAGCTAAAAACTCAGAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
16970607 GACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
647 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
16970672 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATC
712 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * ** **
16970737 ATGT--GCACA------C-ACCCCCCGATCACCGGAATGCCAATGCCACCGGTCAGG---TT--C
777 ATGTGCGCACACCCCCCCGGCCCCCCGATCGCTGGAACCCCAATGCCGTCGGTCAGGTTCTTCGC
*
16970788 --T-C-CGGTGATGGTGCCCCGACGAAGAAAAATG-CAGCACCAGGACATGCCCGA
842 GATGCTCGGTGATGGTGCCCCGACGAAGAAAAATGTC-G-----GCACATGCCCGA
* * *
16970839 GCCTAGTATGTGCTGCCGTAA----C---CC--TC-GA---T---CT-GG--T---CT--G-AT-
1 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* ** * * * *
16970878 CTT-GTACTGGGAATGAACTCTGTATGCCTAAGTCAACAAACGAAACAAGCATGTGGGCACTCAG
66 CTTAG-ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
16970942 TCGGCCAGAGGGGCGGGATACGTAAGCCGAGGATCGATCGGGTCCCCCTCTACGTGCTGTCGATC
130 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATC
* * * * * *
16971007 CTACTACCGTAACACTTAGTCCGATCCGATCCTAGATTGGGAATGAACTCCGTATGCCTAAGCCA
195 CTGCTGCCGCAACCCTTAGTCCGATCCGATCTTAGACTGGGAATGAACT-CGTATGCCTAAGCCA
* * ** * *
16971072 ACTGACGAAACGAGCGGGCTGGCGGTTGGGCACTGCGTCAGCCAGAGAGACGGGATGCGCAAGCC
259 ACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
*
16971137 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGAGTGCCAATGCCATTT
324 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTT
* *
16971202 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAACCTTCACGTGATGTTTCATGGCAAGACGAC
389 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * * ** *
16971267 TCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGATTCAAGATTTTTTAAAATTTTTTCAG
454 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGG
* *** * * *
16971332 AAGTAGTTTTCTTCCCGAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGGACAAAAATA
519 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * * * *
16971397 TTCAGCTAAAAACTCAAAGTGTACAAGATTCTGTGGCCACTTAAAAAAAGTGTCCCCATTTCAGA
584 TTCAGCTAAAAACTCAGAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * *
16971462 AACTTTAATGGCTACTGGAAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
649 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
** * * *
16971527 TCGATTTTTGATGAGGGATAGGGGGCCAATATAATGGCCAAGTACCA-TACCCATCGCACATCAA
714 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* ** * * * *
16971591 GTGCGCACACCCACCTTCGGCCCCCCCGATCGCCCGAACCCCAATGTCATCGGTCAGGATCTCCA
779 GTGCGCACACCC-CC-CCGG-CCCCCCGATCGCTGGAACCCCAATGCCGTCGGTCAGGTTCTTC-
* * * * *
16971656 GCGATGCTCAGGTGATGGCGCACCGACGAAGAAAAATACGGCACCAGCACATGCCTGA
840 GCGATGCTC-GGTGATGGTGCCCCGACGAAGAAAAAT---G--TCGGCACATGCCCGA
* * * *
16971714 GCCCAGCATATGCTGTCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTGCGTATG
1 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
16971779 CTTAGATTAGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAACGAGTGTGCGGGCGCTCAGT
66 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** *
16971844 CGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGTCGGGTTCCTTTATGCGTGCTGTCGATCC
131 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * * * * *
16971909 TGCCGTCGTAACCCTTGGTCCAATCTGATCTTAGACTGGGAATGAACTCCGTAT-CTGTAAGCCA
196 TGCTGCCGCAACCCTTAGTCCGATCCGATCTTAGACTGGGAATGAACT-CGTATGC-CTAAGCCA
* * * * * ** *
16971973 ACTGATGAAATGGGCGGGCGGGCGGACGGGAGGGCACTACGTTTGCCAGAGAGATGGGATGCGCA
259 ACCGACGAAA----CGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
* * *
16972038 AGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCTAATGCC
320 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
*
16972103 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGATGTTTCATGGCAAGA
385 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
16972168 TGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTTAAAATTTT
450 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGA-TTTTTTAAAATTTT
** * *
16972233 TT-GGAAGTTGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGGACAA
514 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * *
16972297 AAAATTTCAACTAAAAACTCAGAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCATT
579 AAAAATTCAGCTAAAAACTCAGAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
16972362 TTAGAAACTTTAATGGCTACTGG-ACGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
644 TCAGACACTTTAATGGCTACTGGCA-GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
** * * *
16972426 GAGTTCTCGATTTTTGATGAAGGATAGGGGG-CAATATAATGGCCAAGTACCAGTACCCATCGCA
708 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* ** *
16972490 CATCATGTGCGCACACCCCCCTCGGCCCCCCGATCGCTGGAACCCTAATGTAGTCGGTCAGATTC
773 CATCATGTGCGCACACCCCCC-CGGCCCCCCGATCGCTGGAACCCCAATGCCGTCGGTCAGGTTC
** *
16972555 TTCGACGATGCTACGGTGATGGTGCCCCGGTGAAGAAAAATGTCGGCTCATGCCCGA
837 TTCG-CGATGCT-CGGTGATGGTGCCCCGACGAAGAAAAATGTCGGCACATGCCCGA
* * *
16972612 GCCTAGCATGTGCTGCCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATG
1 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
16972677 CTTAGACTGGGAATGAACTCCATATTCCTAATTCAACCCACGAAACGAGTGTTCGGGCGCTCAGT
66 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
16972742 CGGCCAGAGGGGCAGGATGCGTAAGCCGAGGATTGGCCGGGTCCCCTTCTACGTGCTGCCGATCC
131 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * *
16972807 TGCCGCCACAACCCTTAGTCTGATTCGATCTTAGACTGGGAATGAACTCGTATGCCTAAGCCAAC
196 TGCTGCCGCAACCCTTAGTCCGATCCGATCTTAGACTGGGAATGAACTCGTATGCCTAAGCCAAC
16972872 CGACGAAACGAGCGGACGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAG
261 CGACGAAACGA---G-CGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAG
* * * *
16972937 CCGTAGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGTGTGCTAATGCCAT
322 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
* *
16973002 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAATCCTTCACGTGAAGTTTCATGGCAAGATG
387 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
** *
16973067 ACTCAATTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTC
452 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
* * * *
16973132 GGAAGGATTTTTGGCACCAAACTTGGTAGACGTGATCCGTGTATTTTTGTTCGCATGCACAAAAA
517 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * *
16973197 AATTCAGCTAAAAACTAAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCA
582 AATTCAGCTAAAAACTCAGAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
16973262 TG-CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
647 -GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * ** *
16973326 TTCTCAAGGTTTGATGCGGGATAGGGGAACAATATAAGGGCCAAGTACCAGCACCCATCGTACAT
711 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* *
16973391 CATGTGCGCACACCCCCCCGGCCCTCCCGATCG-TCAGAACCCCAATGTCGTCGGTCAGGTTCTC
776 CATGTGCGCACACCCCCCCGGCCC-CCCGATCGCT-GGAACCCCAATGCCGTCGGTCAGGTTCT-
* * * ** * *
16973455 TGGTGATGCTCTGGCGATGGTGCCCCGGTGAAGAAAAATGTGTCACCAGCACATGCCCAA
838 TCGCGATGCTC-GGTGATGGTGCCCCGACGAAGAAAAA--TGT---CGGCACATGCCCGA
* *
16973515 GCCTAGCTTGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGCAATGAACTTCGTATG
1 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGG----G-A------ATG
*
16973580 CTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCC
55 ---A-AC------T---C--CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * * * * *
16973645 ACGAAATGAGCGTGCAGGCACTCAGCCAGCCAGAGGGGCGAGATACGCAAGCCAGGGATCAGTCG
105 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCG
* * * * * * **
16973710 GGTCCCCCTCTGCATGTTGCCAATCCTACTGCCGCAACCCTTGGTCCGGCCCGATCTTAGACTGG
170 GGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTTAGTCCGATCCGATCTTAGACTGG
* * * * *
16973775 GAATGAACCCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGTGGGCGGGTGGGCACTATG-CT
235 GAATGAA-CTCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTC-
* *
16973839 GGCCAGAAAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
298 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* * *
16973904 CATATTTCTACGTGCCAATGCCATATTTATGGCTTGTAAATTCATACAATGGT-CCTTAAGCCAT
363 CATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* ** *
16973968 CACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCAAAACTTTATACGG
428 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGG
* * * * *
16974033 TTCAGGATTTTTTAAAATTTTTTTGGAAGGAGTTTT-TCCCCAAACTTGGTAGACGGGATGCTTG
493 TTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
* *
16974097 TATTTTTGTTGGCATGCACAAAAAAGTTCAGCTAAAAACT-TGAAGTGTACAAGATTTTGTGACC
558 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAG-AGTGTACAAGATTTTGTGACC
* *
16974161 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAGTGGCTACTGGCAGCAAACCAGT--AATCTC
622 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
*
16974224 AAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
687 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* *
16974289 CAAGTACCAGCACCCATCGAACATCATGTGCGCACACCCCCATCGGCCCCCCCGATCG-TCGGAA
752 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CCGG-CCCCCCGATCGCT-GGAA
* * * * * * *
16974353 CCCCAATGTCGCCTGTCAGGATCTCCGGTGATGCTCCGGTGATGGTGCCCCAACGAAGAAAAAT-
814 CCCCAATGCCGTCGGTCAGGTTCTTC-GCGATGCT-CGGTGATGGTGCCCCGACGAAGAAAAATG
*
16974417 ACGGCACCAGCAGATGCCCGA
877 TCGG---CA-C--ATGCCCGA
* * * **
16974438 GCCCAGCATGTGCTGCCACAACCCTCGGTCCAGTCTGATTTTAGACTGGGAATGAACTCTATATG
1 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * * * *
16974503 ATTAGCCTGGGAATGAACTCCGTATGCCTAAGTTAACCCACGACACGAGTGTGCAGGCACTCAGT
66 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
16974568 CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCGGGTCCCCTTCTGCGTGCTGTCGAT-C
131 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * *
16974632 --CT-AC-C-ACCGCTTGGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATG-CTAAGCCA
196 TGCTGCCGCAACC-CTTAGTCCGATCCGATCTTAGACTGGGAATGAACT-CGTATGCCTAAGCCA
* * *
16974691 ACCGATGAAACGAGTGAGCGGGCGGGCGGACGGGCACTACGTCGGCCAGAGAG-CAGGATGCGCA
259 ACCGACGAAAC----GAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
** *
16974755 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCTAATGCC
320 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
* *
16974820 ATTTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGA
385 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
** * *
16974885 CGACTCAATTTATATTTTTCATGATTTTTGAAACTTTTTACGATTCGGGATTTTTTAAAATTTTT
450 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * *
16974950 TCGGAAGGTGTTTT-GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGGA-AAA
515 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
16975013 AAAATTCAGCTAAAAACTTAGAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
580 AAAATTCAGCTAAAAACTCAGAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * ** * *
16975078 CAGAAACTTTAATGGCTACCGAAAGCAAACCTGTAAAATCTAAAATGTTCTTTAAGGGGGTGTGA
645 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
** * * * *
16975143 GTTCTCGATTTTTGATGAGGGATAGGGGCCCAATATAATGGCCAAGTACCAGTACCCATCGTACA
710 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * *
16975208 TCATGTGCGCACACCCCCCTCGGCCCCCCCGCTCG-TCGGAAACCCAATGTCGCCGATCAGGTTC
775 TCATGTGCGCACACCCCCC-CGG-CCCCCCGATCGCT-GGAACCCCAATGCCGTCGGTCAGGTTC
* * * * *
16975272 TCCGATGATGCTCCGGTGATGGTGCCCCGACAAAGAAAAATGCCGGCACATGCTCGA
837 TTCG-CGATGCT-CGGTGATGGTGCCCCGACGAAGAAAAATGTCGGCACATGCCCGA
* * * * * *
16975329 GCCCAGCATGTGCTGCCGTAATCCTTGGTCCGATCTAATCTTAGACTGGGAATGAACTCTGTATG
1 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
16975394 CTTAGACTGGCAATGAACTCCGTATGCCTAAATCAACCCACGAAACGAGTGTGCGGGTGCTCA-C
66 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** * * *
16975458 TCGGCCAGAGAGGCGGGATGCGCAAGTCGGGGATCGACCGGGTCCCCTTCTACATGCTGTCGATC
131 -CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATC
* ** *
16975523 CTG-TCGCCGCAACCCTTGGTTTGATCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCC
195 CTGCT-GCCGCAACCCTTAGTCCGATCCGATCTTAGACTGGGAATGAACTC-GTATGCCTAAGCC
** * * *
16975587 AATTGACGAAACGAGCTGGCGGGTAGGTGGGCGAGCACTACGTCGGCCAGAGAGACGGGATGCGC
258 AACCGACGAAACGAGC-GG-GCG--GGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGC
* * ** *
16975652 AAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCCTCATATTTCTATGTGCTAATGC
319 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGC
*
16975717 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTACGCCTTCACGTGAAGTTTCATGGCAAG
384 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* **
16975782 ATGACTCAATTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
449 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
* * * * *
16975847 TTTGAAAGGAGTTTTGGCCCCAAACTTGGTCA-ACGTGATCCGTGTATTTTTTTTGGCATACA-A
514 TTCGGAAGGAGTTTTGGCCCCAAACTTGGT-AGACGTGATCCTTGTATTTTTGTTGGCATGCACA
** *
16975910 AAAAAATTTCAGCTAAAAACTC-GAAGTGTACAAGATTTTGACACCATTTGAAAAAAGTGTCCCA
578 AAAAAA-TTCAGCTAAAAACTCAG-AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* *
16975974 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGG
641 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
*
16976039 GTGAGTTCTC-AGGATTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
706 GTGAGTTCTCGAGG-TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * * * *
16976103 GCACATCATGTGCCCACACCCCCTCGACCCCCCCGATCGCCGGAACCCCAATGCCATAGGTCAGG
770 GCACATCATGTGCGCACACCCCCCCG-GCCCCCCGATCGCTGGAACCCCAATGCCGTCGGTCAGG
* * * * * *
16976168 TTCTCCGGTGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGTCACCAGCACATGGCCGA
834 TTCTTC-GCGATGCT-CGGTGATGGTGCCCCGACGAAGAAAAAT--GT---CGGCACATGCCCGA
* * * * * * * *
16976233 GCCTAGCCTGTGCTGCCACAACCCTTGGTCTGGTCCGATCTTAGACTGGCAACGAACTCCGTATG
1 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* **
16976298 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATAAGCGTGCGGGCGCTCAGC
66 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
16976363 CGGCCAGAGGGGTGGGATGCGCAATCTGGGGATCGGTCGGGTCCCCCTCTGCATGCTGGCGATCC
131 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * * * *
16976428 TGCTACCACAACCCTTAATCCGGTCTGATCTTAGACTGGGAATGAACTCGATATACCTAAGCCAA
196 TGCTGCCGCAACCCTTAGTCCGATCCGATCTTAGACTGGGAATGAACTCG-TATGCCTAAGCCAA
* * * ** ** *
16976493 CCGACGAAAC-A---AGCGAGCGGACGGGCACTACACCACCCAGAGAGACGGGATGCGCAAGCTG
260 CCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
* * *
16976554 TGGATCAATAGGGTGGTAGGTGGGTTTAAGCACATCTTCATATTTCTGTGTGCCAATGCCATTTT
325 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTT
* *
16976619 TCTGGCTTGGAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
390 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * * *
16976684 CGTTTTCTATTTTTCTTGATTTTTAAAACTTTTTACTGTTCGGGATTTTTTAAACTTATTTCGGA
455 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGA
* * * * * * *
16976749 AGGAGTTTTGGTCCCAAAATTGGTAAACGTGATCCTTGTATTTTTTTTGGTACGAACAAAAAAAT
520 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
*
16976814 TCAGCTACAAACTC-GAGGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
585 TCAGCTAAAAACTCAGA-GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * * *
16976878 CACTTTAGTGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGAGGTTTGAGTTC
649 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
16976943 TTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCAT
714 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * *
16977008 GTGCGCACAGCCCCTCCGACCCCCCCGAGCG-TCGGAACCCCAATGCCGTCGGTCAGGTTTTTCG
779 GTGCGCACA-CCCCCCCG-GCCCCCCGATCGCT-GGAACCCCAATGCCGTCGGTCAGGTTCTTCG
* * * * * *
16977072 TGATGCTCCGGCGATGGTGCCCTGGCGAAGAAAAATGCATCACCAGCACATGCCTGA
841 CGATGCT-CGGTGATGGTGCCCCGACGAAGAAAAATG--T---CGGCACATGCCCGA
* * ** * * *
16977129 GCCTAGCATGTGATGCCGCATTCCTCGGTCTGGTCCGATCTTAGACTGGCAATGAACTCCGTATG
1 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
16977194 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGT
66 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
16977259 C-GACATGAGGGCCAGGATGCGCTAGCTGAGGATCGGTCGGGTCCCCCTCTGCATGCTG-CTGAT
131 CGGCCA-GAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTC-GAT
* * * * *
16977322 CCTGCTGCCGCAGCCCTTGGGCC-AGCCCGATCTTAGACTGGGAATGAACTTCGTATCCCTAAGT
194 CCTGCTGCCGCAACCCTTAGTCCGA-TCCGATCTTAGACTGGGAATGAAC-TCGTATGCCTAAG-
* * * *
16977386 CCAACCGATGAAACGAGCGGGTGGGC-GGCTAGGCACTACGTCGGCCAGAGAGACGAGATGTC-C
256 CCAACCGACGAAACGAGCGGGCGGGCGGGC-GGGCACTACGTCGGCCAGAGAGACGGGATG-CGC
* * * *
16977449 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTCGGCACCTCATCATATTTCTACGTGCCAATGC
319 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGC
* *
16977514 CATTTTTATGGCTTCTAAATTCGTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
384 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * ** * * *** *
16977579 ACAACTCGTTTTCTATTTTCCACAATTTTTGAAACTTTTTGCAGTTCAAAATTTTTTTAAATTTT
449 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
* * * *
16977644 TTCAGAAGGCGTTTTGGCCCCAAACTTGGTTGACGTGATCCTTGTATTTTTGTTGTCATGCACAA
514 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
*
16977709 AAAAATTCAGCTAAAAACTCACG-GTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCAT
579 AAAAATTCAGCTAAAAACTCA-GAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
16977773 TTCGGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
643 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
16977838 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
708 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * * *
16977903 CATCATGTGCGTACA-CCCCCCGGCACCCTCGATCGCCGGAACCCCAGTGCCGCCGGTCAGG---
773 CATCATGTGCGCACACCCCCCCGGC-CCCCCGATCGCTGGAACCCCAATGCCGTCGGTCAGGTTC
* * *
16977964 TT--C--T-C-CGGTGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCTGA
837 TTCGCGATGCTCGGTGATGGTGCCCCGACGAAGAAAAAT---G--TCGGCACATGCCCGA
* * * *
16978018 GCCCAGCATGTGCTGCCGCAACACTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCATATG
1 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
*
16978083 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGC
66 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
16978148 CGGCCAGAGGGGCGGGATGTGCAAGCCGAGGATCGATCGGGTCCCCCTCTACGTGCTG-CTGATC
131 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTC-GATC
* ** * * ** * **
16978212 CTACTGCCGCAACCCTCGGTCTGGTGTGATCTTAGACTAGGAA-GAACTCTGTACACCTAAGCCA
195 CTGCTGCCGCAACCCTTAGTCCGATCCGATCTTAGACTGGGAATGAACTC-GTATGCCTAAGCCA
* * *
16978276 ACCGACG-AA--A-CGTGCGGGCGGGCAGGCACTACG-CGGGCCATAGAGACGGGATGCGCAAGC
259 ACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTC-GGCCAGAGAGACGGGATGCGCAAGC
* * *
16978336 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCACATTGCTACGTGCCAATGCCATT
323 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATT
* * * *
16978401 TTTCTAGCTTGTAAATTCATATAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGA
388 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * *
16978466 CTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTC-
453 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
* * *
16978530 GAAGGAGTTTTGGCCTCAAAGTTGGTAGACGTGATCCTTGTATTTTTGTTGGCGTGCAC-AAAAA
518 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* *
16978594 ATTCAGCTAAAAAGTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
583 ATTCAGCTAAAAACTCAGAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
16978659 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
648 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* ** * * * *
16978724 CTCAAGGTTTGATGAGGGATAGGGGTTCAATATAAAGGTCAAGTACCAGAACCCATCACACATCA
713 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * * *
16978789 TGTGTGCACACCCCCCCGGCCGCCCCGATCTC-CGACATCCTAATGTCGTCGGTCAGGTTC-TC-
778 TGTGCGCACACCCCCCCGGCC-CCCCGATCGCTGGA-ACCCCAATGCCGTCGGTCAGGTTCTTCG
** * *
16978851 CGA----C---GATGGTGCCCCGGTGAAGAAAAATGCGACAGCAGCACATGCTCGA
841 CGATGCTCGGTGATGGTGCCCCGACGAAGAAAAAT--GTC-G--GCACATGCCCGA
* ** *
16978900 GCCTAGCATGTGCTGCCGCAACCCTCGGTCCAATTTGATCTTAGACTGGGAATGAACTCCGTATG
1 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * *
16978965 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAATCCACGAAACGAGCGTCCGGGCGCTCAAC
66 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
16979030 TGGCTAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGTGTGCT-ACTGATC
131 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTC-GATC
* * * * * * *
16979094 CTACTACAGCAACCCTCAGTCCGGTCTGATCTTAGTCTGGGAATGAACTTCGTATGCCTAAGCCA
195 CTGCTGCCGCAACCCTTAGTCCGATCCGATCTTAGACTGGGAATGAAC-TCGTATGCCTAAGCCA
* ** * *
16979159 ACCGACGAAATGAGCGGGC--G-ATG-GGGCACTAC-ACAGGCCAGAGAGATGGGATGCGCAAGC
259 ACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTC-GGCCAGAGAGACGGGATGCGCAAGC
* *
16979219 CGTGGATCGATAGGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATT
323 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATT
* * * *
16979284 TTTATGGCTTGTAAATTTATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCGAGACAA
388 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * *
16979349 CTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTG
453 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
* *
16979414 GATGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTT-TTGGGCATGCACAAAAA
518 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT-GGCATGCACAAAAA
* * * *
16979478 AATTCAGCT-ACAACTC-GAAGTGTACAAGATTTTGTGACCAATTGAAAAAAGTGTGCCCATTTA
582 AATTCAGCTAAAAACTCAG-AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
16979541 AGACACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
646 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
16979606 TTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTAAAT
711 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * * *
16979671 CATGTGCGGACACCTCCCCCGGCCCCCCGATCGCCGGAACCTCAATGCTGCCGGTTAGGTTCTCC
776 CATGTGCGCACACC-CCCCCGGCCCCCCGATCGCTGGAACCCCAATGCCGTCGGTCAGGTTCTTC
* * ** *
16979736 GGTGATGCTTCGGCGATGGTGCCTTGGCGAAGAAAAATG-CGGCACCAGCACATGCCCGA
840 -GCGATGC-TCGGTGATGGTGCCCCGACGAAGAAAAATGTC-G-----GCACATGCCCGA
16979795 GCCCAGCATGTGCTGCCGCAA-CC-C--T-C-G---G-TC-----C-------G-A-TCCG-AT-
1 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * * *
16979834 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACTCATGAAATGAGCGTGAGGGTGCTCAGT
66 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
16979899 CGGTCAGAGGGGCGGGATGCGCAAACCGAGGATCGATCGAGTCCCCCTCTGCGTGCTGTTGATCC
131 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCC
** ** ** *
16979964 TGCTATACGTGACCCTCGGTCC-AGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGGC
196 TGCT-GCCGCAACCCTTAGTCCGA-TCCGATCTTAGACTGGGAATGAAC-TCGTATGCCTAAGCC
* * * * *
16980028 AACCGACAAAACGAGTGGGCGGGTGGGCGTGTGGGCACTACGCCTGCCAGAGAGACGGGATGCGC
258 AACCGACGAAACGAGCGGGCGGGCGGGC----GGGCACTACGTCGGCCAGAGAGACGGGATGCGC
* *
16980093 AAGCCGTGGATCGATAGGGTGGTAGGTTGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
319 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGC
* * *
16980158 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTGATGGTAGG
384 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * * * * *
16980223 ACAACTCATGTTGTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGAATTTTCAAAATTTT
449 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
* *
16980288 TTCGAAAGGAGTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCTTGCACAA
514 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* *
16980352 AACAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
579 AAAAATTCAGCTAAAAACTCAGAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
16980417 TTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
644 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
16980482 AGTTCTCGAGGTTTGATGAGGGATA-GAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
709 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * *
16980546 ATCATGTGCGCACACCACCCCCCACGGCCCCCCCGATCGCCT-GAACTCCAATACCGTCGGTCAA
774 ATCATGTGCG--CA-CACCCCCC-CGG-CCCCCCGATCG-CTGGAACCCCAATGCCGTCGGTCAG
*
16980610 G---TT--C--T-C-CGGTGATGGTGCCCCGACGAAGAAAAATAT-GGCACCAGCATATGCCCGA
833 GTTCTTCGCGATGCTCGGTGATGGTGCCCCGACGAAGAAAAATGTCGG---CA-C--ATGCCCGA
* * * * * * * * *
16980665 GCCCAGCATATGCTACTGCAACCCTCGGTCTGATCCGATCTTATACTAGGAATGAACTTCGTATG
1 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * ** *
16980730 CTTAGACTGGGAATTAACTCCGTATGCCTAGGTCGACCCACGAAACGAGCGTGCGGGTACTCAAC
66 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** ** * * *
16980795 CGGCCAGAGGGGCAAGATGCGCAAGCCGGGGATCGACCGGGTTCCCCTTTGTGTGCTGTCGATCC
131 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * * * *
16980860 TGCTACTGCAACCCTCAGTCCGATCCGATCTTAGACTGGGATTGAACTCCATATTCCTAAGCCAA
196 TGCTGCCGCAACCCTTAGTCCGATCCGATCTTAGACTGGGAATGAACT-CGTATGCCTAAGCCAA
* *
16980925 CCGACGAAACGAGCGGACGGGCAGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCACAA
260 CCGACGAAACGA---G-CGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
*
16980990 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCTTGCCAATGCCA
321 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA
* * *
16981055 TTTTCATGGCTTGTAAATTCATACAATGGTCCCTTCAGCCTTCACGTGAAGTTTCATGGCAAGAT
386 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * ** *
16981120 GACTCGTTTTCTAGTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAACTTTTTT
451 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * * *
16981185 CGAAAGGAGTTTTGGCCCCAAACTTGGTAGACCTGATCCTTATATTTTTTTTGGC-TCGCACAAA
516 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT-GCACAAA
* *
16981249 AAAATTCAGCTTAAAACTC-GAAGTGTACAAGATTTTGTGACCATTGGAAAAAAGTGTCCCCATT
580 AAAATTCAGCTAAAAACTCAG-AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
16981313 TC-GAACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAAGGGGTGT
644 TCAG-ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* *
16981377 GAGTTCTCGAGGTTTGATGAGGGATAGGTGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTA
708 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * *
16981442 AATCATGTGCGCACA-CCCCCCGGCCCCTCCGATCGCCGGAACCCCAATGCCATCGGTCAGGTTC
773 CATCATGTGCGCACACCCCCCCGGCCCC-CCGATCGCTGGAACCCCAATGCCGTCGGTCAGGTTC
* * * *** *
16981506 TCCGGTGATGCTTCGGCGATGGTGCAGTGGCGAAGAAAAATG-CGGCACCAGCACATGCCCGA
837 TTC-GCGATGC-TCGGTGATGGTGCCCCGACGAAGAAAAATGTC-G-----GCACATGCCCGA
* * * * *
16981568 GCCCAGCATGTGCTGCCACAACCCTCGATCTGATCTGATCTTAGACTGGTAATGAACTCCGTATG
1 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * *
16981633 CATAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCCGGTGCTCAGC
66 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
16981698 CGGCCAGAGGTGCAGGATGTGCAAGTCGGGGATCGATCAGGTCCCCCTCTACGTGCTGTCGATCC
131 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCC
** * * * * * * * *
16981763 TGCTATCGTAACTCTCAGTTCGGTCCAATCTAAGACTAGGAATGAACTCTGTATGCCTAAGCCAA
196 TGCTGCCGCAACCCTTAGTCCGATCCGATCTTAGACTGGGAATGAACTC-GTATGCCTAAGCCAA
* * * *
16981828 CCGACGAAACGAGCGGGCGGGTGGACGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCG
260 CCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
* * * * *
16981893 TGGATCGATAGGGTGATAGGTGGGTTTAGGGACATCTTCTTATTTTTGCATGCCAATGCCATTTT
325 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTT
* * *
16981958 TATGGCTTGTCAACTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACT
390 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * *
16982023 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGAATTTTTAAAATTTTTTTGGA
455 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGA
*
16982088 AGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
520 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* * * *
16982153 TCAACTAAAAACT-TGAAGTGTACAAGATTTTGTGACCAGTT-AACAAAAGTGCCCCCATTTCAG
585 TCAGCTAAAAACTCAG-AGTGTACAAGATTTTGTGACCATTTGAA-AAAAGTGTCCCCATTTCAG
* *
16982216 ACACTTCAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
648 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
16982281 CTCGAGGTTTGGTGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
713 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * * * *
16982346 TTTGTGCACA--CCCCCGGCCCTCCCGATCG-TCGGAACCCCACTGCTGCCGGTCAGGTTATCCA
778 TGTGCGCACACCCCCCCGGCCC-CCCGATCGCT-GGAACCCCAATGCCGTCGGTCAGGTTCTTC-
* ** * *
16982408 GCGATGCACCGACGATGGTG-CCCGAACGAAGAAAAATACAGCACCAGCACATGCCCGA
840 GCGATGC-TCGGTGATGGTGCCCCG-ACGAAGAAAAAT---G--TCGGCACATGCCCGA
*
16982466 GCCCAGCATGTGCTGACGCAA-CC-C--T-C-G---G-TC-----C--GG--T---CT--G-AT-
1 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
*
16982505 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGC
66 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
16982570 CGACCGGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCATGCTGTCGATCC
131 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * *
16982635 TGCTGCCGCAACCC-TCGATTCGATCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
196 TGCTGCCGCAACCCTTAG-TCCGATCCGATCTTAGACTGGGAATGAACT-CGTATGCCTAAGCCA
* * * **
16982699 ACCGACAAAACGAGCCTGGCGGCCGGGCTGGCGGGCACTACGTCGACCAGAGAGACGGGATGCAT
259 ACCGACGAAACGAG-C--G-GG-CGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGC
* *
16982764 AAG-CGTGGATCGATAGGAATGGTAGGTAGGTTTAGGCACATCTTCATATTT-TGCGTGCCAATG
319 AAGCCGTGGATCGATAGG-GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATG
*
16982827 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAG
383 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * *
16982892 GACGACTCATTTTCTATTTTTCAACGATTTTTGAAAC-TTTTAC-GTTCGAGA-TTTTTAAAATT
448 GACGACTCGTTTTCTATTTTTC-ATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATT
16982954 TTTTC-GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
512 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
16983018 -AAAAAATTCAGCTAAAAACTC-GAAGTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCCCC
577 AAAAAAATTCAGCTAAAAACTCAG-AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
16983080 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
641 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
*
16983145 GTGAGTTCTCGAGGTTTGATGAGGGATA-GAGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
706 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * *
16983209 CACATCATGTGCGCACACCACCCCCACGCCCCCCGGATCGCCT-GAACTCGCAATACCATCGGTC
771 CACATCATGTGCGCACACC-CCCCC-GGCCCCCC-GATCG-CTGGAAC-CCCAATGCCGTCGGTC
* *
16983273 AAG---TT--C--T-C-CGGTGATGGTGCCCCGGCGAAGAAAAAT-TCGGCACCAGTACATGCCC
831 AGGTTCTTCGCGATGCTCGGTGATGGTGCCCCGACGAAGAAAAATGTCGG---C---ACATGCCC
16983328 GA
890 GA
* * * *
16983330 GCCCAGCATGTGCTACCGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
1 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
16983395 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGCGCTCAAC
66 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * ** *
16983460 CGACCAGAGGGGCGGGATGCACAAGCCGGGGATCGGCCGGGTCCCCCTCTGTATGCTGCCGATCC
131 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * ** * * **
16983525 TGCTGTCGCAACCCTCAGTTTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGGAAA
196 TGCTGCCGCAACCCTTAGTCCGATCCGATCTTAGACTGGGAATGAACT-CGTATGCCTAAGCCAA
* * * * * * *
16983590 CCGATGAAACCAACGGGCGGGCGGGCGGGTGGGCACTAAGCCAGCCAGAGGGACGGGATGCGCAA
260 CCGACG--A--AACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* * *
16983655 GCCGTGGATCGATAGGGTGCTAGGTGGGTTTAGGCACATCTTCATTTTTCTGCATGCCAATGCCA
321 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA
*
16983720 TTTTTATGGCTTGTAAATTCATACAATGGTCCCATAAGCCTTCACGTGAAGTTTCATGGCAAGAC
386 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * * *
16983785 GACTCGTTTTCTATTTTTAACGATTTTGGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTT
451 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * *
16983850 TGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAA
516 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
16983915 AAACTAAGCTAAAAACTC-GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
581 AAATTCAGCTAAAAACTCAG-AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * * * *
16983979 TAAACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATTCTTTTTAAGGTGGTGTGA
645 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
16984044 GTTCTCGAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTAGCAGCACCCATCGCACA
710 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * *
16984109 TCATGTGCGCACA--CCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGTTCAGGTTCTC
775 TCATGTGCGCACACCCCCCCGG-CCCCCCGATCGCTGGAACCCCAATGCCGTCGGTCAGGTTCTT
* ** *
16984172 CAGGGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGA
839 C-GCGATGCT-CGGTGATGGTGCCCCGACGAAGAAAAATGT-----CGGCACATGCCCGA
* * * *
16984232 GCCTAGCATGTGCAGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
1 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * *
16984297 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAATCCAC-AGAATGAGCGTGCGGGC
66 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA-AACGAGCGTGCGGGC
16984355 ACTACGTCAG
Statistics
Matches: 11694, Mismatches: 1376, Indels: 856
0.84 0.10 0.06
Matches are distributed among these distances:
839 3 0.00
840 164 0.01
841 5 0.00
844 2 0.00
847 1 0.00
848 62 0.01
849 33 0.00
850 27 0.00
851 41 0.00
852 22 0.00
853 265 0.02
854 5 0.00
856 2 0.00
857 2 0.00
858 2 0.00
859 2 0.00
861 1 0.00
862 2 0.00
864 80 0.01
865 6 0.00
866 19 0.00
867 4 0.00
868 2 0.00
869 114 0.01
870 168 0.01
871 107 0.01
872 232 0.02
873 75 0.01
874 33 0.00
875 70 0.01
876 118 0.01
877 177 0.02
878 360 0.03
879 11 0.00
880 10 0.00
881 230 0.02
882 332 0.03
883 450 0.04
884 267 0.02
885 33 0.00
886 6 0.00
887 17 0.00
888 17 0.00
889 319 0.03
890 295 0.03
891 232 0.02
892 102 0.01
893 86 0.01
894 263 0.02
895 628 0.05
896 1305 0.11
897 716 0.06
898 653 0.06
899 636 0.05
900 201 0.02
901 618 0.05
902 147 0.01
903 389 0.03
904 264 0.02
905 444 0.04
906 18 0.00
907 1 0.00
908 5 0.00
909 2 0.00
912 3 0.00
914 3 0.00
917 3 0.00
918 3 0.00
919 1 0.00
920 2 0.00
921 2 0.00
922 106 0.01
923 119 0.01
924 139 0.01
925 102 0.01
926 130 0.01
927 2 0.00
929 148 0.01
930 28 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (891 bp):
GCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCC
TGCTGCCGCAACCCTTAGTCCGATCCGATCTTAGACTGGGAATGAACTCGTATGCCTAAGCCAAC
CGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGT
GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTT
ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
GTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAA
GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
CAGCTAAAAACTCAGAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
GCGCACACCCCCCCGGCCCCCCGATCGCTGGAACCCCAATGCCGTCGGTCAGGTTCTTCGCGATG
CTCGGTGATGGTGCCCCGACGAAGAAAAATGTCGGCACATGCCCGA
Found at i:16973594 original size:26 final size:26
Alignment explanation
Indices: 16973554--16973632 Score: 133
Period size: 26 Copynumber: 3.0 Consensus size: 26
16973544 CCGGTCTGAT
*
16973554 CTTAGACTGGCAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
16973580 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
16973606 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
16973632 C
1 C
16973633 CTAAGTCAAC
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
25 2 0.04
26 49 0.96
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:16974528 original size:26 final size:26
Alignment explanation
Indices: 16974478--16974528 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
16974468 CAGTCTGATT
*
16974478 TTAGACTGGGAATGAACTCTATATGA
1 TTAGACTGGGAATGAACTCCATATGA
* *
16974504 TTAGCCTGGGAATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCATATG
16974529 CCTAAGTTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGA
Found at i:16975408 original size:26 final size:26
Alignment explanation
Indices: 16975368--16975420 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16975358 CCGATCTAAT
* *
16975368 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
16975394 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
16975420 C
1 C
16975421 CTAAATCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:16976301 original size:26 final size:26
Alignment explanation
Indices: 16976272--16976324 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16976262 CTGGTCCGAT
16976272 CTTAGACTGGCAACGAACTCCGTATG
1 CTTAGACTGGCAACGAACTCCGTATG
* * *
16976298 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGCAACGAACTCCGTATG
16976324 C
1 C
16976325 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGCAACGAACTCCGTATG
Found at i:16977197 original size:26 final size:26
Alignment explanation
Indices: 16977168--16977220 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16977158 CTGGTCCGAT
16977168 CTTAGACT-GGCAATGAACTCCGTATG
1 CTTAGACTAGG-AATGAACTCCGTATG
16977194 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16977220 C
1 C
16977221 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16978095 original size:26 final size:26
Alignment explanation
Indices: 16978057--16978109 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16978047 CCGGTCCGAT
16978057 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
16978083 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
16978109 C
1 C
16978110 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:16978975 original size:26 final size:26
Alignment explanation
Indices: 16978939--16978991 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16978929 CCAATTTGAT
16978939 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16978965 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16978991 C
1 C
16978992 CTAAGTCAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16980742 original size:26 final size:26
Alignment explanation
Indices: 16980704--16980756 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16980694 CTGATCCGAT
* *
16980704 CTTATACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
16980730 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16980756 C
1 C
16980757 CTAGGTCGAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16981647 original size:26 final size:26
Alignment explanation
Indices: 16981609--16981659 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
16981599 GATCTGATCT
*
16981609 TAGACTGGTAATGAACTCCGTATGCA
1 TAGACTGGGAATGAACTCCGTATGCA
16981635 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
16981660 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCA
Found at i:16983398 original size:26 final size:26
Alignment explanation
Indices: 16983369--16983421 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16983359 CCGATCCGAT
16983369 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16983395 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16983421 C
1 C
16983422 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16984307 original size:26 final size:26
Alignment explanation
Indices: 16984271--16984323 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16984261 CTGGTCTGAT
16984271 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16984297 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16984323 C
1 C
16984324 CTAAGTCAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16985882 original size:26 final size:26
Alignment explanation
Indices: 16985853--16985946 Score: 188
Period size: 26 Copynumber: 3.6 Consensus size: 26
16985843 GATATTAGAT
16985853 TGGGAATGAACTCCGTTTGCATGGAC
1 TGGGAATGAACTCCGTTTGCATGGAC
16985879 TGGGAATGAACTCCGTTTGCATGGAC
1 TGGGAATGAACTCCGTTTGCATGGAC
16985905 TGGGAATGAACTCCGTTTGCATGGAC
1 TGGGAATGAACTCCGTTTGCATGGAC
16985931 TGGGAATGAACTCCGT
1 TGGGAATGAACTCCGT
16985947 ATGCCTAAGT
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 68 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (26 bp):
TGGGAATGAACTCCGTTTGCATGGAC
Found at i:16986827 original size:953 final size:943
Alignment explanation
Indices: 16984985--16986844 Score: 2888
Period size: 953 Copynumber: 2.0 Consensus size: 943
16984975 TCTGATCTTA
* * * *
16984985 GACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCGCTCAGCCGGC
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATCCGGGCACTCAGCCAGC
* * * * * *
16985050 CAGAGGGGCGAGATGTGCAAGCCAGGGATCGGCCTAGTCCCCCTCTGTGCGCTGTCGATCCTACT
66 CAGAGGGGCGAGATGGGCAAGCCAGGGATCGACCGAGTCCCCCTCTGTACGCTCTCAATCCTACT
** *
16985115 GCCGTAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
131 GCCACAACCCTCAATCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
*
16985180 CGAAACGAGCGGCCTGGCACTACGCCGACCAGAGAGACAGGATGCGCAAGCCATCGATCGATAGG
196 CGAAACGAGCGGCCTGGCACTACGCCGACCAAAGAGACAGGATGCGCAAGCCATCGATCGATAGG
*
16985245 GTGGTAGGTGGGTTTAGGCACATCTTCAAATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAA
261 GTGGTAGGTGGGTTTAGGCACATCTTCAAATTTCTACATGCCAATGCCATTTTTATGGCTTGTAA
16985310 ATTCATAAAATGGTACCTTAAAACTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
326 ATTCATAAAATGGTACCTTAAAACTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
*
16985375 TTCACAAATTTTGAAACTTTTTGCAGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGC
391 TTCACAAATTTTGAAACTTTTTACAGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGC
*
16985440 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAAC
456 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
*
16985505 TCGAGGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
521 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* *
16985570 ACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATG
586 ACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGCGGTGTGAGTTCTCGAGGTTTGATG
*
16985635 AGGGATAGCGGGCCAATATAAGGACCAAGTAACAGCACCCATCGCACCTCATATGCGCACACCCC
651 AGGGATAGCGGGCCAATATAAGGACCAAGTAACAGCACCCATCGCACATCATATGCGCACACCCC
* *
16985700 CCGACCCCTCCGATCATCGAAACCCCAATGCTGCCAGTCAGGTTCTCCGACGATGCTCCGACGAT
716 CCGACCCCCCCGATCATCGAAACCCCAATGCCGCCAGTCAGGTTCTCCGACGATGCTCCGACGAT
* * * *
16985765 GTTGCCCCAGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGTAACC
781 GGTGCCCCAGCGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
* *
16985830 CTCGATCCGGTCTGATATTAGATTGGGAATGAACTCCGTTTGCATGGACTGGGAATGAACTCCGT
846 CTCGATCCGGTCTGATATTAGACTGGGAATGAACTCCATTTGCATGGACTGGGAATGAACTCCGT
16985895 TTGCATGGACTGGGAATGAACTCCGTTTGCATG
911 TTGCATGGACTGGGAATGAACTCCGTTTGCATG
*
16985928 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTCCGGGCACTCAGCCAGC
1 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATCCGGGCACTCAGCCAGC
* * * *
16985993 CAGAGGGGCGAGATGGGCAAGCCAGGGATCGATCGGGTCCCCCTCTGTATGCTACT-AATCCTGC
66 CAGAGGGGCGAGATGGGCAAGCCAGGGATCGACCGAGTCCCCCTCTGTACGCT-CTCAATCCTAC
* *
16986057 TGCCACAACCCTCAATCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
130 TGCCACAACCCTCAATCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* *
16986122 ACG-AACGAGCGGGCGGGCTAGCGGGCGGGCACTACGTCGGCCAAAGAGACAGGATGCGCAAGCC
195 ACGAAACGAGC-GGC---CT--------GGCACTACGCCGACCAAAGAGACAGGATGCGCAAGCC
* * ** * * *
16986186 GTGGATCGATAGGGTGGTAGGT-GGTTTAGGTGCATCTTCATATTTCTGCATGGCAATGCCATTT
248 ATCGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAAATTTCTACATGCCAATGCCATTT
* * **
16986250 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
313 TTATGGCTTGTAAATTCATAAAATGGTACCTTAAAACTTCACGTGAAGTTTCATGGCAAGACGAC
* * * ** *
16986315 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTTGG
378 TCGTTTTCTATTTTTCACAAATTTTGAAACTTTTTACAGTTCAGGATTTTTTAAAA-TTTTTTCG
*
16986380 AAA-GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAC
442 AAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
16986444 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
507 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
*
16986509 ACACTTTAATTGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGCGGTGTGAGTT
572 ACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGCGGTGTGAGTT
* * *
16986574 CTCGAGGTTTGATGAGGGATAG-GGTGCCTATATAAGGGCCAAGTACCAGCACCCATCGCACATC
637 CTCGAGGTTTGATGAGGGATAGCGG-GCCAATATAAGGACCAAGTAACAGCACCCATCGCACATC
* * *
16986638 ATATGTGCACACCCCCCGGCCCCCCCGATCGTC-AGAACCCCAATGCCGCCAGTCAGGTTCTCCG
701 ATATGCGCACACCCCCCGACCCCCCCGATCATCGA-AACCCCAATGCCGCCAGTCAGGTTCTCCG
* * *
16986702 ATGATGCTCCGGCGATGGTGCCCC-GATGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAG
765 ACGATGCTCCGACGATGGTGCCCCAG-CGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAG
* * *
16986766 CATGTGCTGCCGCAACCCTCGGTCCGGTCTGCTCTTAGACTGGGAATGAACTCCATTTGCATGGA
829 CATGTGCTGCCGCAACCCTCGATCCGGTCTGATATTAGACTGGGAATGAACTCCATTTGCATGGA
*
16986831 TTGGGAATGAACTC
894 CTGGGAATGAACTC
16986845 TGTATGCCTA
Statistics
Matches: 830, Mismatches: 70, Indels: 24
0.90 0.08 0.03
Matches are distributed among these distances:
942 7 0.01
943 178 0.21
944 1 0.00
946 2 0.00
952 4 0.00
953 574 0.69
954 64 0.08
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (943 bp):
GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATCCGGGCACTCAGCCAGC
CAGAGGGGCGAGATGGGCAAGCCAGGGATCGACCGAGTCCCCCTCTGTACGCTCTCAATCCTACT
GCCACAACCCTCAATCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
CGAAACGAGCGGCCTGGCACTACGCCGACCAAAGAGACAGGATGCGCAAGCCATCGATCGATAGG
GTGGTAGGTGGGTTTAGGCACATCTTCAAATTTCTACATGCCAATGCCATTTTTATGGCTTGTAA
ATTCATAAAATGGTACCTTAAAACTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
TTCACAAATTTTGAAACTTTTTACAGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGC
CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
ACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGCGGTGTGAGTTCTCGAGGTTTGATG
AGGGATAGCGGGCCAATATAAGGACCAAGTAACAGCACCCATCGCACATCATATGCGCACACCCC
CCGACCCCCCCGATCATCGAAACCCCAATGCCGCCAGTCAGGTTCTCCGACGATGCTCCGACGAT
GGTGCCCCAGCGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
CTCGATCCGGTCTGATATTAGACTGGGAATGAACTCCATTTGCATGGACTGGGAATGAACTCCGT
TTGCATGGACTGGGAATGAACTCCGTTTGCATG
Found at i:16987657 original size:902 final size:900
Alignment explanation
Indices: 16985902--16991971 Score: 7886
Period size: 902 Copynumber: 6.8 Consensus size: 900
16985892 CGTTTGCATG
* * * *
16985902 GACTGGGAATGAACTCCGTTTGCATGGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGA
1 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * * * * *
16985967 AACGAGCGTCCGGGCACTCAGCCAGCCAGAGGGGCGAGATGGGCAAGCCAGGGATCGATCGGGTC
66 AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTC
** ** * * *
16986032 CCCCTCTGTATGCTACTAATCCTGCTGCCACAACCCTCA-ATCTGGTTC-GATCTTAGACTGGGA
131 CCCCTCTGCGTGCTACCGATCCTGCTACCGCAACCCTCAGA-CCGGTTCTGATCTTAGACTGGGA
* * * *
16986095 ATGAACTCCGTATGCCTAAGCCAACCGACG-AACGAGCGGGCGGGCTAGCGGGCGGGCACTACGT
195 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA--AGACGGGCTGGCGGGCGGGCACTACGC
* * **
16986159 CGGCCAAAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT-GGTTTAGGTGCATCT
258 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
*
16986223 TCATATTTCTGCATGGCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
323 TCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
**
16986288 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACG
388 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTA-G
* *
16986353 GTTTGGGATTTTTTAAAATTTTTTTGGAAA-GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
452 GTTCGGGATTTTTTAAAA-TTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
*
16986417 TGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
516 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* *
16986482 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCAACAAACCTGTAAAATCT
581 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* * *
16986547 CAAATGCTCTTTAAGGCGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGTGCCTATATAAGGG
646 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* * *
16986612 CCAAGTACCAGCACCCATCGCACATCATATGTGCACA-CCCCCCGGCCCCCCCGATCGTCAGAAC
711 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCCCCGATCGTCGGAAC
* * * *
16986676 CCCAATGCCGCCAGTCAGGTTCTCCGATGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATGC
775 CCCAATGCCGTCGGTCAGGTTCTCC-ACGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGC
* * *
16986741 GGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGCTCTTA
839 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCTGATCTTA
* * * * * *
16986803 GACTGGGAATGAACTCCATTTGCATGGATTGGGAATGAACTCTGTATGCCTAAGTCAACCCACG-
1 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * * * * * *
16986867 AATGAGCGTTCGGGCGCTCAGCCGGCCAGAGTGGCGAGATACGCATGCCGGGGAT-GACCGGGTC
66 AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTC
* * * * *
16986931 CCCTTCTGCGTGCTACCGATCCTGCTACCCCAACCCTCAGACCGGTTCT-TTCTTAGATTGAGAA
131 CCCCTCTGCGTGCTACCGATCCTGCTACCGCAACCCTCAGACCGGTTCTGATCTTAGACTGGGAA
*
16986995 TGAACTCCGTATGCCTAAGCCAACCGACAAAACGAACAGACGGGCTGGCGGGCGGGCACTACGCC
196 TGAACTCCGTATGCCTAAGCCAACCGACGAAACG-A-AGACGGGCTGGCGGGCGGGCACTACGCC
* *
16987060 GGCTAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
259 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
**
16987125 CATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
324 CATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* *
16987190 CACGTGAAGTTTCATGGCAAGACGACCCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTAGGT
389 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTAGGT
* * *
16987255 TCGGGAGTTTTTTGAAATTTTTTGGGAAGGAGTTTTGGCCCCCAAACTTGGTAGACGTGATCCTT
454 TCGGGA-TTTTTTAAAATTTTTTCGAAAGGAGTTTTGG-CCCCAAACTTGGTAGACGTGATCCTT
* * *
16987320 GTATTTTTGTTGGCATGCACAAAAAAATTAAGCTAAAAACTCGAAGAGTACAAGATTTTTTGACC
517 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
*
16987385 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTC
582 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* * * *
16987450 AAATGCTCTTTAAGGGCGTGTGAATTCTCGAGGTTTGATGAGGAATAGGGGGCCAATATAAAGGC
647 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* * * **
16987515 CAAGAACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCTCTCCGATCACCGGAACCC
712 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCC
* * *
16987580 CAATGCCATCGGTCAGGTTCTCCGACGATGCTCCGGCAATGGTGCCCCGGTGAAGAAAAATGTGG
777 CAATGCCGTCGGTCAGGTTCTCC-ACGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGCGG
* * ** ** *
16987645 CACAAGCACATGCCCGAGCCCAGCTTGTGCTGTTGCAACCCTCGGTCCTTTTTGATCTTA
841 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCTGATCTTA
* *
16987705 GACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGA
1 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * **
16987770 AACGAGTGTGCGGGCGCTCAGCCGGCCAGAGTGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTC
66 AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTC
* * * * * *
16987835 CCTCGCTGCGTGCTATCGATCCTGCTACCGTAACCCTC-GATCTGGTT-TGATCTTAGACTGGAA
131 CCCCTCTGCGTGCTACCGATCCTGCTACCGCAACCCTCAGA-CCGGTTCTGATCTTAGACTGGGA
* * **
16987898 ATGAATTTCGTATGCCTAAGCCAACCGACGAAACG-A-ACGGGCT--------GGCACTATACCG
195 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAAGACGGGCTGGCGGGCGGGCACTACGCCG
* * * * *
16987953 GTCAGAGAGACGGGATGCGCAAGCTGTCGATCGATAGGGTGGTAGGTGGGTTTAGGAACAACTTC
260 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
16988018 ATATTTCTGCATG-CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
325 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * ** *
16988082 ACGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCACGATTTTTGAAACTTTTTGCGGT
390 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTT-AGGT
* * * *
16988147 TAGGGATTTTTTAAAATTTTTTCGAAAGGAGTTCTAGCCCCAAACTTGGTAAACGTGATCCTTGT
454 TCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
* * *
16988212 ATTTTTGCTAGCATGC-CTAAAAAAATTCAGCTAAAAACTCGATGTGTACAAGATTTTGTGACCA
519 ATTTTTGTTGGCATGCAC-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
*
16988276 TTTGAAAAAAGTG-CCCCATTTCAGACACATTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
583 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
*
16988340 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGTGATAGGGGGCCAATATAAGGGCC
648 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * * * *
16988405 AAGTACCAGCACCCATCGCACATCATGTGCGCAGACACCCCCCGGCCCACTGATCATCGAAACCC
713 AAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCCGGCCCCCCGATCGTCGGAACCC
* * * * * *
16988470 CAAT-AC-TACGGGTCAGGTTCTCCA--A--------CGATGATGACCCAGCGAAGAGAAATGCG
777 CAATGCCGT-C-GGTCAGGTTCTCCACGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGCG
* * *
16988523 GCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCAATCTGATCTTA
840 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCTGATCTTA
*
16988584 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAGCTCCGTATGCCTAAGTCAACCCACGA
1 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * *
16988649 AACGAACGTGCGGGCGCTCAGTCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTC
66 AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTC
* * * *** ** * *
16988714 CCCCTCTGCATGCTATCGATCCGGCTGTTGCAACCCTTGGTCCAG-TCTGATCTTAGACTGGGAA
131 CCCCTCTGCGTGCTACCGATCCTGCTACCGCAACCCTCAGACCGGTTCTGATCTTAGACTGGGAA
* * *
16988778 TGAACTCCGTATGCCTAAGCCAACCGACAAAACG-AG-TGGGCAT-----GCGGGCACTACACCG
196 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAAGACGGGC-TGGCGGGCGGGCACTACGCCG
16988836 AGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
260 -GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
*
16988901 CATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCTCTTAAGCCTT
324 CATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * * *
16988966 CACGTTAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTAACGATTTTTGAAAA-TTTTT-GC
389 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTTCAAAACTTTTTAG-
** ** * *
16989029 AGTTCAAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGAACCAAACTTGGTTGATGTGATACC
452 -GTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT-CC
* * * * *
16989094 -TCTATTTTT-TTGGCAAGCA-TAAAAAATTCAGCTAAAAACTCGTAGCGTACAAGATTTTGTGA
515 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
16989156 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
580 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* *
16989221 TCAAAAGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCACA-ATAAA
645 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA-ATATAAG
* * * * *
16989285 TGCCAAGTACCAGCACCCATCGCACATCATGTCCGCACA-CCCCCCGACCCCCCTGATCGCCGAA
709 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCC-GATCGTCGGA
* * * * *
16989349 ACCCCAATGTCGTCGATCAGGTTCTCCA--A--------CGATGATGACCCGGCGAAGAAAAATG
773 ACCCCAATGCCGTCGGTCAGGTTCTCCACGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATG
* * * *
16989404 CGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCTGCAACCCTTGGTCTGATCTGATCTTA
838 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCTGATCTTA
* * *
16989467 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAGCTTCATATGCCTAAGTCAACCCACGA
1 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * * * * *
16989532 AACGAACGTGCGGGCCCTCAGCCGGCCAGAGCGGCGGGATACG-ATTGCCGGGGATCGAACGGGT
66 AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA-AGCCGGGGATCGATCGGGT
** * * * ** * ** * *
16989596 CCCCCTCTATGTGCTGCTGATCCTCCTACTACAACTCTCAGTTCAG-TCTAATCTTAGACTGGGA
130 CCCCCTCTGCGTGCTACCGATCCTGCTACCGCAACCCTCAGACCGGTTCTGATCTTAGACTGGGA
* * * * * *
16989660 ATGAACTCCGTATGCCTTAGCCAACCGACGAAATGAGTGGGCGGG-TGGATGGGCGGGCACTAGG
195 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA--AGACGGGCTGG-CGGGCGGGCACTACG
* *
16989724 CCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGATTTAGGCATATC
257 CCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* * *
16989789 TTCATATTTCTACGTGCCAATGACATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
322 TTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* ** *
16989854 TTCACGTGAACTTTCATGGCAAGACGACTCGTTTTCTATTTTTCGTGATTTTCAAAACTTTTTGT
387 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTT-A
* *
16989919 GGTTCGGGATTTTTTAAAATTTTTTCGAAAGGATTTTTGACCCCAAACTTGGTAGACGTGATCCT
451 GGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* * *
16989984 TGTATTTTTGTAGGCATGCACAAAAAAAGTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGAC
516 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
*
16990049 CATTTGAAAAAAGTGTCCTCATTTCAGACACTTTAATGGCTACTGGCCA-CAAACCTGTAAAATC
581 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG-CAGCAAACCTGTAAAATC
* * * *
16990113 TCAAATGCTCTTTAA-GGGGTGTGAGTTCTTGAGGTTTAATGAGGGACAAGGGGCCAATATAAGG
645 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* ** * **
16990177 GCCAACTACCAGCACCCATCGCACATCATGTGCGCACAGCCCCCAAGCCCCCCCGATCGTTAGAA
710 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCCGGCCCCCCGATCGTCGGAA
* * * *
16990242 CCCTAATGCTGTCGGTCAGGTTCTCTAGCGATGCTTCGGCGATGGTGCCCCGGTGAAGAAAAATG
774 CCCCAATGCCGTCGGTCAGGTTCTCCA-CGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATG
* * * * *
16990307 CGGCACCAGGACATGCCCAAGCCCTGCATGTGCTGTCGAAACCCT---T--G----G-TC---
838 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCTGATCTTA
* * * *
16990357 --C-----A--AA-T-CG-AT-CTCAGACTGGGAATGAACTCCGCATGCCTGAGTCAACCCATGA
1 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * *
16990409 AACGAGCGTGCGAGCACTTAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTC
66 AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTC
* * * * * * *
16990474 CCCCTCTACGTGCTGCTGATCCTGCTACTGCAACCCTCAGTCTGG-TCTGATCTTAGACAGGGAA
131 CCCCTCTGCGTGCTACCGATCCTGCTACCGCAACCCTCAGACCGGTTCTGATCTTAGACTGGGAA
* * *
16990538 T-AACTCCGTATGCCTAAGCCAACCGACGAAATGAGTGGAC-GGTTGGACGGGCGGGCACTACGC
196 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGA--AGACGGGCTGG-CGGGCGGGCACTACGC
* * *
16990601 CGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGATTTAGGCATATCT
258 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
*
16990666 TCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGCCCCTTAAGCCT
323 TCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * * ** *
16990731 TCACGTGAACTTTCATGGCAAGACGACTCATTTTCTA-TTTTCATGATTTTTGAAACTTTTTGCG
388 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTT-AG
* * * *
16990795 GTTCGAGATTTTTTAAAATTTTTTTGAAAGGATTTTTGACCCCAAACTTGGTAGACGTGATCCTT
452 GTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
*
16990860 GTATTTTTGTTGGCATGCACAAAAAAAGTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
517 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
* *
16990925 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCCGTAAACCTGTAAAATCTC
582 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
*
16990990 AAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
647 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* **
16991055 CAAGTACCAGCACCCATCGCACATCATGAGCGCACACCCCCAGGGCCCCCCCCGATCGTCGGAAC
712 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG--CCCCCCGATCGTCGGAAC
* * * *
16991120 CCTAATGCCGTTGGTCAGGTTCTCCAGCGATGCTCCGGCGATGGTGCCCCGGTAAAGAAAAATGT
775 CCCAATGCCGTCGGTCAGGTTCTCCA-CGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGC
* * * * * *
16991185 GACACCAGGACATGCCCGAGCCCAGCATGTCCTGTCGTAACCCTCAGTCCGAT-TCGATCTTA
839 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCT-GATCTTA
* * * *
16991247 GACTGGGAATTAACTCCGTATGCTTAGACTAGGAATGACCTCCGTATGCCTGAGTCAACCCACGA
1 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * * * *
16991312 AACGAGCGTGTGGGCGCTTAGCCGGCCATAGGGGCGGGATGCGCAAGCCGGGGATCGGTCAGGTC
66 AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTC
* ** * * * * * * ** * *
16991377 CCCCTCTACGTGCTGTCAATCTTGTTGCCGTAACCCTC-GATCC-GATCCAATCTTAGTCTGGTA
131 CCCCTCTGCGTGCTACCGATCCTGCTACCGCAACCCTCAGA-CCGGTTCTGATCTTAGACTGGGA
* * * * *
16991440 ATGAACTCTGTATGCCTAAGCCAACCGATGAAACG-AG-C--G--GGCAGGCGGGCACTATGACG
195 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAAGACGGGCTGGCGGGCGGGCACTACGCCG
* * *
16991499 GCCAAAGAGATGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
260 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
*
16991564 ATATTTCTGCATACCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
325 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* *
16991629 ACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACTGT
390 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTA-GGT
* * * * * * *
16991694 TCTGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCGAACTTGCTAGATGTGATTCTTGT
454 TCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
*
16991759 ATTTTTGTTGGCATGCACAAAAAGATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
519 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
*
16991824 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAA
584 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
*
16991889 ATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
649 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
16991954 AGTACCAGCACCCATCGC
714 AGTACCAGCACCCATCGC
16991972 CAGAACCCCA
Statistics
Matches: 4597, Mismatches: 466, Indels: 216
0.87 0.09 0.04
Matches are distributed among these distances:
874 1 0.00
875 231 0.05
876 298 0.06
877 261 0.06
878 4 0.00
879 278 0.06
880 4 0.00
881 2 0.00
882 13 0.00
883 378 0.08
884 223 0.05
885 159 0.03
886 11 0.00
887 6 0.00
888 2 0.00
889 157 0.03
890 366 0.08
891 229 0.05
892 231 0.05
893 15 0.00
894 1 0.00
895 1 0.00
896 171 0.04
897 290 0.06
898 1 0.00
899 89 0.02
900 150 0.03
901 217 0.05
902 428 0.09
903 264 0.06
904 116 0.03
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (900 bp):
GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTC
CCCCTCTGCGTGCTACCGATCCTGCTACCGCAACCCTCAGACCGGTTCTGATCTTAGACTGGGAA
TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAAGACGGGCTGGCGGGCGGGCACTACGCCGG
CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
TATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTAGGTTC
GGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAAT
GCCGTCGGTCAGGTTCTCCACGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGCGGCACCA
GCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCTGATCTTA
Found at i:16987737 original size:26 final size:26
Alignment explanation
Indices: 16987701--16987753 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16987691 CCTTTTTGAT
16987701 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
16987727 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16987753 C
1 C
16987754 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16988616 original size:26 final size:26
Alignment explanation
Indices: 16988580--16988632 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16988570 CCAATCTGAT
16988580 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16988606 CTTAGACTGGGAATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16988632 C
1 C
16988633 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16989514 original size:26 final size:26
Alignment explanation
Indices: 16989463--16989515 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16989453 CTGATCTGAT
*
16989463 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
16989489 CTTAGACTGGGAATGAGCTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
16989515 C
1 C
16989516 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16991272 original size:26 final size:26
Alignment explanation
Indices: 16991243--16991295 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16991233 CCGATTCGAT
* *
16991243 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
16991269 CTTAGACTAGGAATGACCTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16991295 C
1 C
16991296 CTGAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16993569 original size:26 final size:26
Alignment explanation
Indices: 16993540--16993592 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16993530 CTGGTCCGAT
16993540 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16993566 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16993592 C
1 C
16993593 CTAAGTCAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16994481 original size:26 final size:26
Alignment explanation
Indices: 16994445--16994497 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16994435 CTGGTCTGAT
16994445 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16994471 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16994497 C
1 C
16994498 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16995200 original size:716 final size:720
Alignment explanation
Indices: 16993789--16995288 Score: 2082
Period size: 716 Copynumber: 2.1 Consensus size: 720
16993779 GGGCGGGCAG
** * * *
16993789 GCGGGCACTACGGCAGTTAGAGAGACGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGG
1 GCGGGCACTACACCGGTCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * *
16993854 TTTAGGCACATCTTCATATTTCTGCGTTCTAATGCCATTTTTATGGCTTGTAAATTCATACAATG
66 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* *
16993919 GTCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTT
131 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * * * * *
16993984 GAAACTTTTTGCTGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGG
196 GAAA------------TC--GATTTTTTAAAATATTTTCGAAAGAAGTTTTGGCCCAAAACTTGA
* * * * *
16994049 TAGACGTTATCTTTCTATTTTACTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTAC
247 TAGACATGATCCTTCTATTTTACTTGGCATGCACAAAAAAATTCAGCAAAAAACTCGAAGTGTAC
* *
16994114 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCAGTAA
312 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* *
16994179 ACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAACATTTGATGAGGGATAGGGG
377 ACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGAGAGTTCTCAACATTTGATGAGAGATAGGGG
* * * *
16994244 GCCAATATAAGGGCCAATTACCAGCACCCATCGCACATCATGAGCGCCCACCCCCCACTGCCCCC
442 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGAGCACACACCCCCCACGGCCCCC
* *
16994309 CGGTCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAGCGATGCTCCGACGATGGTGCCCCGA
507 CGATCGTCGGAACCCCAATGCCGCCAGTCAGGTTCTCCAGCGATGCTCCGACGATGGTGCCCCGA
* * * * * * *
16994374 TGAAGTAAAATACGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCACAACCCTCGGTCTGG
572 TGAAGAAAAATACGACACCAGCACACGCCCGAGCCCAGCATATGCTGCCACAACCCTCAGTCCGG
* * *
16994439 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGT
637 TCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
*
16994504 CAACCCATGAAACAAGCGT
702 CAACCCACGAAACAAGCGT
16994523 GCGGGCACTACACCGGTCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
1 GCGGGCACTACACCGGTCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
16994588 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
66 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
*
16994653 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTT
131 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
*
16994718 GAAA-C-ATTTTTT-AAATATTTTCGAAATAAGTTTTGGCCCAAAACTTGATAGACATGATCCTT
196 GAAATCGATTTTTTAAAATATTTTCGAAAGAAGTTTTGGCCCAAAACTTGATAGACATGATCCTT
* ** *
16994780 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCAAAAAACTCGAAGTGTATAAGATTTTGTGACC
261 CTATTTTACTTGGCATGCACAAAAAAATTCAGCAAAAAACTCGAAGTGTACAAGATTTTGTGACC
*
16994845 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
326 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTC
** * **
16994910 AAATTTTCTTTAAGGGGGTGAGAGTTCTCGAGGTTTG-TGAGAGATAGGGGGCCAATATAAGGGC
391 AAATGCTCTTTAAGGGGGTGAGAGTTCTCAACATTTGATGAGAGATAGGGGGCCAATATAAGGGC
* *
16994974 GAAGT-CCTAGCACCCATCGCACATCATGTGCACACACCCCCC-CGGCCCCCCCGATCGTCGGAA
456 CAAGTACC-AGCACCCATCGCACATCATGAGCACACACCCCCCACGG-CCCCCCGATCGTCGGAA
* * * * * *
16995037 CCTCAATGCCGTCAGTCAGGTTCT-CTGACGATGCTCTGGCGATGGTGCCCCGGTGAAGAAAAAT
519 CCCCAATGCCGCCAGTCAGGTTCTCCAG-CGATGCTCCGACGATGGTGCCCCGATGAAGAAAAAT
*
16995101 GCGACACCAGCACACGCCCGAGCCCAGCATATGCTGCCACAACCCTCAGTCCGGTCCGATCTTAG
583 ACGACACCAGCACACGCCCGAGCCCAGCATATGCTGCCACAACCCTCAGTCCGGTCCGATCTTAG
* *
16995166 ACTAGGAATGAACT-TGATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGT
648 ACTAGGAATGAACTCCG-TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
*
16995230 AACGAGCGT
712 AACAAGCGT
* * ** * * * * *
16995239 TCAGGCGGT-CAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGAT
1 GCGGGCACTACA-CCGGTCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
16995289 CTGGTCCACC
Statistics
Matches: 685, Mismatches: 76, Indels: 28
0.87 0.10 0.04
Matches are distributed among these distances:
715 9 0.01
716 289 0.42
717 191 0.28
718 7 0.01
721 1 0.00
734 188 0.27
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (720 bp):
GCGGGCACTACACCGGTCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
GAAATCGATTTTTTAAAATATTTTCGAAAGAAGTTTTGGCCCAAAACTTGATAGACATGATCCTT
CTATTTTACTTGGCATGCACAAAAAAATTCAGCAAAAAACTCGAAGTGTACAAGATTTTGTGACC
ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTC
AAATGCTCTTTAAGGGGGTGAGAGTTCTCAACATTTGATGAGAGATAGGGGGCCAATATAAGGGC
CAAGTACCAGCACCCATCGCACATCATGAGCACACACCCCCCACGGCCCCCCGATCGTCGGAACC
CCAATGCCGCCAGTCAGGTTCTCCAGCGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATACG
ACACCAGCACACGCCCGAGCCCAGCATATGCTGCCACAACCCTCAGTCCGGTCCGATCTTAGACT
AGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACA
AGCGT
Found at i:16996434 original size:185 final size:185
Alignment explanation
Indices: 16996063--16996462 Score: 525
Period size: 185 Copynumber: 2.2 Consensus size: 185
16996053 GGTCCAGTCC
* * *
16996063 GATCTTAGACTGAGAATGAAATCCGTAAGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAA
1 GATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * *
16996128 CCCACGAAACGTGCGTGCGGCCGCTCAGCAGGCCAGAGGGGCGGGATGTGCAAGTCGGAGATCGA
66 CCCACGAAACGAGCGTGCGGCCGCTCAACAGGCCAGAGGGGCGGGATGCGCAAGCCGGAGATCGA
* * *
16996193 CCAGGTCCCCCTCTACGTACTACCGATCTTGCTACCACAATCCTCGATTCGGTCT
131 CCAGGTCCCCCTCTACGTACTACCGATCCTACTACCACAACCCTCGATTCGGTCT
* * *
16996248 GATCTTAGACTAAAAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
1 GATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* ** * * * *
16996313 CCCACGAAATGAGCGTTTGGGCGCTCAACCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGA
66 CCCACGAAACGAGCGTGCGGCCGCTCAACAGGCCAGAGGGGCGGGATGCGCAAGCCGGAGATCGA
* * * * * *
16996378 TCGGGTCCCCCTCTACGTGCTGCCGATCCTACTACCACAGCCCT--TTGTCTGGTCT
131 CCAGGTCCCCCTCTACGTACTACCGATCCTACTACCACAACCCTCGAT-TC-GGTCT
*
16996433 GATCTTAGACTGGGAATGAACTCCGTATGC
1 GATCTTAGACTGAGAATGAACTCCGTATGC
16996463 CTAAGCCAAC
Statistics
Matches: 183, Mismatches: 30, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
183 1 0.01
184 2 0.01
185 180 0.98
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (185 bp):
GATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
CCCACGAAACGAGCGTGCGGCCGCTCAACAGGCCAGAGGGGCGGGATGCGCAAGCCGGAGATCGA
CCAGGTCCCCCTCTACGTACTACCGATCCTACTACCACAACCCTCGATTCGGTCT
Found at i:16998029 original size:898 final size:900
Alignment explanation
Indices: 16996242--16998421 Score: 3221
Period size: 898 Copynumber: 2.4 Consensus size: 900
16996232 ATCCTCGATT
* *** * *
16996242 CGGTCTGATCTTAGACTAAAAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTA
1 CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATAAACTCCGTATGCCTA
* * ** *
16996307 AGTCAACCCACGAAATGAGCGTTTGGGCGCTCAACCGGCCAGAGGGGTGGGATGCGCAAGCCGGG
66 AGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGG
** * ** * * **
16996372 GATCGATCGGGTCCCCCTCTACGTGCTGCCGATCCTACTACCACAGCCCTTTGTCTGGTCTGATC
131 GATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTACTATCGTAACCCTTGGTCTGGTCCAATC
**
16996437 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAG-AGGGCAGGAGGGCGGG
196 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCA-GGC---A-GGCGGG
* * *
16996501 CAGGCGAGCACTACGCCGGCTAGAGAAACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGAT
256 C--G-G-GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
16996566 GGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
317 GGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* *
16996631 ATGGTCTCTTAAGCCTTAACGTCAAGTTTCATGGCAACATGACTCGTTTTCTATTTTTCATGATT
382 ATGGTCCCTTAAGCCTTAACGTCAAGTTTCATGGCAACACGACTCGTTTTCTATTTTTCATGATT
** * *
16996696 TTTGAAACTTTTTACGGTTCGGGATTTTTTTAAATTTTTTCAGAAGGATTTTTAGCCCCAAACTT
447 TTTGAAACTTTTTACGGTTCCAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTAGCCCCAAACTT
*
16996761 GGTAGACGTAATCCTTGTATTTTTTTTTTTGGCATGCACAAAAAAATTCAGCAAAAAACTCAAAG
512 GGTAGACGTAATCCTTGTA-TTATTTTTTTGGCATGCACAAAAAAATTCAGCAAAAAACTCAAAG
*
16996826 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGA
576 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGA
*
16996891 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTGTGATGAGGGAT
641 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTGTGATGAGGGAT
*
16996956 AGGGGGCCAATATAAGGGCCAAGTACCAGTACCTATCCCACATCATGTGCGTACACCCCCCGGCC
706 AGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCCCACATCATGTGCGTACACCCCCCGGCC
16997021 CCCTGATCACCGGAACCCTAATGCCGCCGGTCAGGTTCTCTCACGATGCTCCAGCGATGGTGCCC
771 CCCTGATCACCGGAACCCTAATGCCGCCGGTCAGGTTCTCTCACGATGCTCCAGCGATGGTGCCC
**
16997086 CGACGAAGAAAAAAGTGGCACCAGCACATGCTCGAGCCCAGCATGTGCT-ACAACAACCCTTGGT
836 CGACGAAGAAAAAAGTGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGAC-ACAACCCTCAGT
16997150 C
900 C
*
16997151 CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGATT-GACTGGGAATAAACTCCGTATGCCTA
1 CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATAAACTCCGTATGCCTA
* * * *
16997215 AGTTAGCCCATGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGTGGGATGCGCAAGCCAGG
66 AGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGG
* * * * *
16997280 GATCGGCCAGGTCCCCCACTGCGTGCTACCGATCCTACTGTCGTAACCCTTGGTCTGGTCCAATC
131 GATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTACTATCGTAACCCTTGGTCTGGTCCAATC
* *
16997345 TTAGACTGGGAATGAACTCCGTATGCCGAAGCCAATCGATGAAACGAGCAGGCAGGCGGGCGGGC
196 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCAGGCAGGCGGGCGGGC
*
16997410 ACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
261 ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* * *
16997475 CACATCTTCATATTTCTGCATGCCAATTCCATTTTTATGACTTGTAAATTCATACAATGGTCCCT
326 CACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * *
16997540 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACT-ATTTTTGAAAC
391 TAAGCCTTAACGTCAAGTTTCATGGCAACACGACTCGTTTTCTATTTTTCA-TGATTTTTGAAAC
* *
16997604 TTTTTACGGTTCCAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
455 TTTTTACGGTTCCAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTAGCCCCAAACTTGGTAGACG
* * ** *
16997669 TGATCCTTGTA-TATTTTTTTGGCATGCATAAAAAAATTCAGTTAAAAACTCGAAGTGTACAAGA
520 TAATCCTTGTATTATTTTTTTGGCATGCACAAAAAAATTCAGCAAAAAACTCAAAGTGTACAAGA
* *
16997733 TTTTGTGTCCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGAAGCAAACCT
585 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGAAGCAAACCT
* *
16997798 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATATGGGGCCA
650 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTGTGATGAGGGATAGGGGGCCA
16997863 ATATAAGGGCCAAGTACCAGTACCCATCCCACATCATGTGCGTACACCCCCCGGCCTCCC-GATC
715 ATATAAGGGCCAAGTACCAGTACCCATCCCACATCATGTGCGTACACCCCCCGGCC-CCCTGATC
* * ** *
16997927 ACCGGAACCCTAATGCCGTCGGTCAGGTTCTTTGGCGATGCTTC-GACGATGGTGCCCCGACGAA
779 ACCGGAACCCTAATGCCGCCGGTCAGGTTCTCTCACGATGCTCCAG-CGATGGTGCCCCGACGAA
* * * * *
16997991 GAAAAATGTGGCACCAGCACATGC-CTGAGCCTAGCATGTGCTGTCGCAATCCTCAGTC
843 GAAAAAAGTGGCACCAGCACATGCTC-GAGCCCAGCATGTGCTGACACAACCCTCAGTC
* *
16998049 CGGTCCGATCTTAGA-TCGGGAATGAACTCTGTATGCTTAGA-TCAGGAA-AGAACTCCGTATGC
1 CGGTCCGATCTTAGACT-GGGAATGAACTCCGTATGCTTAGACT-GGGAATA-AACTCCGTATGC
* * * * ** **
16998111 CTAAGTCAACCCATGAAACGAGCGAGCGGGTGCTCAGCCGGCCAGAAGGGCGGGATGCATAAATC
63 CTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCC
* * *
16998176 GGGGATCGGCCGGGTCCCCCTCTACGTGCTGTCGATCCTACTATCGTAACCCTCGGTCTGATCCA
128 GGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTACTATCGTAACCCTTGGTCTGGTCCA
* * * *
16998241 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAACCGATGAAATGAGCAGGCGGGTGGGCG
193 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCAGGCAGGCGGGCG
* * * * **
16998306 GGCACTACGCCGGCCAGACAGACGGGATGTGCAGGCCATGGATCGATAGGGTGGTAGGTTAGTTT
258 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
16998371 AGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAA
323 AGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAA
16998422 AGTGTCCCCA
Statistics
Matches: 1145, Mismatches: 116, Indels: 30
0.89 0.09 0.02
Matches are distributed among these distances:
897 3 0.00
898 371 0.32
899 297 0.26
900 251 0.22
901 2 0.00
902 1 0.00
904 7 0.01
905 1 0.00
908 179 0.16
909 33 0.03
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (900 bp):
CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATAAACTCCGTATGCCTA
AGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGG
GATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTACTATCGTAACCCTTGGTCTGGTCCAATC
TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCAGGCAGGCGGGCGGGC
ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
CACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
TAAGCCTTAACGTCAAGTTTCATGGCAACACGACTCGTTTTCTATTTTTCATGATTTTTGAAACT
TTTTACGGTTCCAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTAGCCCCAAACTTGGTAGACGT
AATCCTTGTATTATTTTTTTGGCATGCACAAAAAAATTCAGCAAAAAACTCAAAGTGTACAAGAT
TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGAAGCAAACCTG
TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTGTGATGAGGGATAGGGGGCCAA
TATAAGGGCCAAGTACCAGTACCCATCCCACATCATGTGCGTACACCCCCCGGCCCCCTGATCAC
CGGAACCCTAATGCCGCCGGTCAGGTTCTCTCACGATGCTCCAGCGATGGTGCCCCGACGAAGAA
AAAAGTGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGACACAACCCTCAGTC
Found at i:16998096 original size:26 final size:26
Alignment explanation
Indices: 16998058--16998110 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16998048 CCGGTCCGAT
* * *
16998058 CTTAGATCGGGAATGAACTCTGTATG
1 CTTAGATCAGGAAAGAACTCCGTATG
16998084 CTTAGATCAGGAAAGAACTCCGTATG
1 CTTAGATCAGGAAAGAACTCCGTATG
16998110 C
1 C
16998111 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGATCAGGAAAGAACTCCGTATG
Found at i:16998758 original size:26 final size:26
Alignment explanation
Indices: 16998729--16998779 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
16998719 GTGATCCGAT
16998729 CTTAGACTGGAAATGAACTCCGTATC
1 CTTAGACTGGAAATGAACTCCGTATC
*
16998755 CTTAGACTGGAAATGAACTTCGTAT
1 CTTAGACTGGAAATGAACTCCGTAT
16998780 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATC
Found at i:16999632 original size:26 final size:26
Alignment explanation
Indices: 16999596--16999651 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
16999586 CCGGTCCGAT
* *
16999596 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
16999622 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
16999648 CTTA
1 CTTA
16999652 AGTCAAACCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:17000528 original size:26 final size:26
Alignment explanation
Indices: 17000499--17000551 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17000489 CCGGTCCCAT
* *
17000499 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGCAATGAACACCATATG
*
17000525 CTTAGACTGGCAATGAACACCGTATG
1 CTTAGACTGGCAATGAACACCATATG
17000551 C
1 C
17000552 CCCCCACGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACACCATATG
Found at i:17000920 original size:896 final size:896
Alignment explanation
Indices: 16999049--17005539 Score: 8014
Period size: 896 Copynumber: 7.2 Consensus size: 896
16999039 GGTTCATACA
* * *
16999049 ATGGCTTATAAATTCATACAATGGTCCCTTAATCCTTCACGTGAAG-TTCATGACAAGACGACTC
1 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * * *
16999113 ATTTTTTATTTTTCATGATTTTTGAAACTTTTTGCGGTTC-AGGATTTTTAAAAATTTTTTCGGA
66 ATTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGGA
*
16999177 AGGAT-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCACAAAAAAA
130 AGG-TGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * *
16999241 TTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCAATTTCAGA
194 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * * *
16999306 CACTTTAATGGCTACTTGCAACAAACCTATAAAATCTAAAATGCTCTTTAAGGGGGTGTGAGTTC
259 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
16999371 TCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
324 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * *
16999435 GTGTGCACACCCCCCTCGGCCCCCCTGATCACCGGAACCCCAATGCCGTCTGTCAGGTTCTCCAG
389 GTGCGCACA--CCCC-CGGCCCCCCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGG
* * *
16999500 CGTTGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCA
451 CGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* *
16999565 TGTGTTGTCGCAACCCTT-GGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGAC
516 TGTGCTGTCGCAA-CCTTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * * ** *
16999629 TGGGAATAAACTCCGTATGCTTAAGTCAAACCATTAAACGAGCGTGCGGGCGCTCAGCCGACCAG
580 TGGGAATGAACTCCGTATGC--CA--C-ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
* * * * * * * * *
16999694 AGGGGCGGGATGTGCAAGCCAGGGATCGGTCGGGTCCCCCTTTGTGTGCTGTCGATCCTACTACC
640 AGGGGCTGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCC
* * * *
16999759 ACAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTTCGTCTGCCTAAGCCAACCGATGA
705 ACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGA
* * * ** *
16999824 AACAAGTG-GACAGATGG-GTAGGCGGGCACTACGCCGATCGGAGAGACGGGATGCGCAAGCCGT
770 AACGAGCGAG-CAGGTGGCG--GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
*
16999887 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTCCATGCCAATGCCAATTTT
832 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC-ATTTT
16999952 T
896 T
*
16999953 -TGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
1 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * *
17000017 ATTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAA
66 ATTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAA
* *
17000082 GGTGTTTTGGCCCCAAACTTGGTAAACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATT
131 GGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
** *
17000147 CAGCTAAAAACTCGAAGTGTTGAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTGAGACA
196 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * * *
17000212 CTTTAATGGCTACTGGCAGTAAACTTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGATTTCTC
261 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* *
17000277 CAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCAAAGTACCAGCACCCATCGCACATCATGT
326 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * *
17000342 GCGCACACCCCCTGGCCCCCCCGATCACCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGAT
391 GCGCACACCCCC-GGCCCCCCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGAT
* ** * ** *
17000407 GCTCTGGCGATGGTGCCTCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTG
455 GCTCCGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * * *
17000472 CTGTCGGAACCTTCGGTCCGGTCCCATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGCA
520 CTGTCGCAACCTTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* * * * *
17000537 ATGAACACCGTATGCC-C-CCCACGAAATGAGCGTACGGGCGCTCAACCGGCCAAAGGGGCTGGA
585 ATGAACTCCGTATGCCACACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCTGGA
** *** ** * * ** * *
17000600 TGCGCAAGCCGGGGATCGGCCGGGTCATGCTCTATGTGCTGCCGTTCTTGCTGCTGCAACACTTG
650 TGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCG
* * * *
17000665 GTCTGGTCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGATGAAATGAGCGAG
715 GTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGAG
* * *
17000730 CAGGCAGGCGGGCGGGCACTACGCCGGCCAGAAAGACGGGATGCGCAAGTCGTGGATCGATAGGG
780 CAGG-TGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
*
17000795 TGCTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTT
844 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTT
* * * *
17000848 ATGGCTTGTAAATTCATACTATGGTCCCTTAAGACTTCACGTGAAGTTTCATGACCAGACGACTC
1 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * * * * *
17000913 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTACAATTTTTTTGGAA
66 ATTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAA
* *
17000978 GGAT-TTTTGGCCCCAAACTTGGTAGCCGTGATTCC-CGTATTTTTGTTGGCATGCACAAAAAAA
131 GG-TGTTTTGGCCCCAAACTTGGTAGACGTGA-TCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* *
17001041 TTCAGCTAAAACCTAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA-TCGTCCCCATTTCAG
194 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT-GTCCCCATTTCAG
* * * * *
17001105 ACACTTTAATTGCTACTCGCAGCAAACCTCTAAAATCTCAAATGCACATTAAGGGGGTGTGAGTT
258 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
*
17001170 CTCGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
323 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * *
17001235 TGTGCGCACACTCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCCCCGGG
388 TGTGCGCACAC-CCCCGGCCCCCCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGC
*
17001300 GATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGTCC-ATGCCCAGCA
452 GATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGA-GCCCAGCA
* * * * *
17001364 TGTGCTGCCGCAACCCTCGGTCCAGTTCGATATTAGACTGGGAATGAACTCCGTATGCTTAGACT
516 TGTGCTGTCGCAACCTTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * * * * *
17001429 AGGAACGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCTGGCTAGA
581 GGGAATGAACTCCGTATGCC--A--C-ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
* ** * *
17001494 GGGG-TGGCATGCGCAAGCCGGGGATCGATCGGGTCCCCCACTAAGTGCTGCCAATCCTACTGCC
641 GGGGCTGG-ATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCC
* * * * *
17001558 GCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCAACG-
705 ACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGA
* * **
17001622 AA--A-CGAGC--G-GGCGGACGGGCACAACGCCGGCCAGAGAGACGGGATGCGCAAGCCGCAGA
770 AACGAGCGAGCAGGTGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* * *
17001681 TCGATAGGGTGGTAGCTGGGTTTACGCACATCTTCATATTTCTGA-ATGCCAATGCCATGTTT
835 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-ACATGCCAATGCCATTTTT
* *
17001743 ATGGCTTGTAAATTCATACAATGGTCCATTAAGCCTTCACGTGAAGTTTCATGGCAAGACGTCTC
1 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * ** ** ** *
17001808 GTTTTTTATTTTTCACAATTTTCCAAACTTTTTGTGGTTCGAGATTTTTTAAAATTTTTTTGGAA
66 ATTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAA
* * * * *
17001873 GGAGTTTTGGCCCCAAACTTCGTAGACGTGATCCCTGTAAATTTTTTTTGGCAGGCACAAAAAAA
131 GGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT--ATTTTTGTTGGCATGCACAAAAAAA
*
17001938 TTCAGCTAAAACCTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
194 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * * *
17002003 CACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTTAAATCCTCTTTGA-GGGGTGTGAGTTC
259 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
*
17002067 TCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
324 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* *
17002132 GTGCGCACACCCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC-CCTGG
389 GTGCGCACA--CCCCCGGCCCCCCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCC-GG
* * *
17002195 GGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGTCC-ATGCCCAGC
451 CGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGA-GCCCAGC
* * * * * *
17002259 ATGTGCTGCCGCAACCCTCAGTCCGGTCCGATATTAGACTAGGAATGAACTCTGTATGCTTAGAC
515 ATGTGCTGTCGCAACCTTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * ** *
17002324 TGGGAACGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAATCAGCCAG
580 TGGGAATGAACTCCGTATGCC--A--C-ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
* * * * **
17002389 AGGGG-TGGGATGCGAAAGCCGAGGATCGATCGGGTCCCCCTCTGCATGCTGTCGATCCTGCTAT
640 AGGGGCT-GGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGC
* * * * *
17002453 CACAACCCTTGGTCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACG
704 CACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATG
* * * *
17002518 AAACGAGCGGGCAGGTGGGTGGGCGGGCACTATGCCGGCCAGAGAGACAGGATGCGCAAGCCGTG
769 AAACGAGCGAGCAGGT-GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* * *
17002583 GATCGATAGGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTGCCTGCCAATGCCATTTTT
833 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTT
*
17002647 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGACAAGACGACTC
1 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
** * *
17002712 ATTTTCTATTTTTCATGATTTTCCAAACTTTTTGCGGTTTGAGATTTTTTAAAATTTTTTCGGAA
66 ATTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAA
* * * *
17002777 GGAT-TTTTCGCCCCAAAATTGGTAGACGTGATCCCTGTATTTTTTTTGGCATGCACAAAAAAAT
131 GG-TGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* *
17002841 TTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGAC
195 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * * *
17002906 ACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTTAAATCCTCTTTGA-GGGGTGTGAGTTCT
260 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
*
17002970 CGAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
325 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * *
17003035 TGCGCACAGCCCCCGGCCCCTCCGAT-AGTCGGAACCCCAATGCCGCCGGTCAGGTTC-CTCGGT
390 TGCGCACA-CCCCCGGCCCCCCCGATCA-TCGGAACCCCAATGCCGTCGGTCAGGTTCTC-CGGC
* *
17003098 GATGCTCCGATGATGGTGCCCCGACAAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCAT
452 GATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
* * * ** *
17003163 GTTCTGCCGCAACCCTT-GGTCCAGTTTGATATTAGACTGGGAATGAACTCCGTATGC-----C-
517 GTGCTGTCGCAA-CCTTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * * *
17003221 -----T-AA----G--T--CA-ACCCACAAAACGAGCGTGCGGGTGCTCAGTCAGCCAGAGGGGC
581 GGGAATGAACTCCGTATGCCACACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
* * * * * * **
17003271 GGGATACGAAAGCCGGGGATCGACCGGGTCCCCCTCTACATGCTGCCGATCCTGCTATCACAACC
646 TGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACC
* * *
17003336 CTTGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAG
711 CTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAG
* * * * *
17003401 CGGGCGGGTGGGCGGGCGGGCACTACGCCGGCCAGAAAGACGAGATGCGCAAGCCATGGATCGAT
776 CGAGCAGGT-GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
* *
17003466 AGGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTGCATGCCAATGCCATTTTT
840 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTT
*
17003523 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTC
1 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * * * * **
17003588 ATTTTCTATTTTTCTTGATTTTTGAAACTTTCTACAGTTCGAGATTTTTTAAAATATTTTCAAAA
66 ATTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAA
* * *
17003653 GGAGTTTTGGCCACAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATT
131 GGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* * *
17003718 CCGCTAAAAACACGAAGTGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTCAGACA
196 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * *
17003783 CTTTAATGGCTACTGGTAGCAAAACTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTT
261 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* * *
17003848 AAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACACCATGT
326 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * * * *
17003913 GCGTACACCCCCCGGCCCCCCCGATCGTCGGAACCCAAATGTCATTGGTCAGGTTCT---GCG--
391 GCGCACA-CCCCCGGCCCCCCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGAT
* * * *
17003973 G---C---GATGGTGCCCCGACGGAGAAAAATGTGGCACCAGCACATGCTCGAGCCCAGTATGTG
455 GCTCCGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
*
17004032 CTATCGCAACCCTCGGTCTGGTACGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
520 CTGTCGCAA-CCT---TC--G---G-TC-----C---G---G---TCCG-AT-CTTAGACTGGGA
*
17004097 ATGAAC-CTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGT
559 ATGAACTC-CGTATGCTTAGACTGGGAATGAACTCCGTATGCC--A--C-ACCCACGAAACGAGC
* * * * * * *
17004161 GTGCGGACGCTCAGTCAGACAGAGGGGC-GGATGCACAAGCCGGGGAGCGGTCGGGTCCCCCTCT
618 GTGCGGGCGCTCAGCCGGCCAGAGGGGCTGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCT
* * * * * * * *
17004225 GTGTGCTGCCAATCTTGCTACCACAACCCTCGATCTGGTCTGATCTTAAACTGGGAATGAACTCC
683 GCGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCC
* * * * * *
17004290 GTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGAGCGGGCAGGCACTACGCCAGCCAGAG
748 GTATGCCTAAGCCAACCGATGAAACGAGCGAGCAGGTG-GCGGGCGGGCACTACGCCGGCCAGAG
* * *
17004355 AGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGTTGGGTTTAGGCATATCTTCATATTTC
812 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
** * *
17004420 TGTGA-GCCAAAGCCATTTAT
877 T-ACATGCCAATGCCATTTTT
*
17004440 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTT
1 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * * * *
17004505 GTTTT-TATTTTTCACGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGAAA
66 ATTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAA
* * * *
17004569 AGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGAATTTTTGTTGGCATGCACAAAAAAAAT
131 GGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* * ** *
17004634 CAGCCAAAAACTGGAAGTGTACAACTTTTTGTGACCATTCGAAAATAA-TGTCCCCATTTCAGAC
196 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA-AAGTGTCCCCATTTCAGAC
* *
17004698 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGAGTGTGAGTTCT
260 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
*
17004763 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACAAGCACCCATCGCACATCATG
325 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * * * * *
17004828 CGGGCACACCCCCCGACCCCCCGATCACCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGAT
390 TGCGCACACCCCCGGCCCCCCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGAT
* * ** * *
17004893 GCTCCGACGATGGTTCCCCGACGAAGAAAAATGCGAAACCAGCACTTGACCGAGCCCAGCATGTG
455 GCTCCGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * * *
17004958 CTGTCGCAACCCTCGGTCTGGTTCGATCTTAAACTGGGAATGAACTCCGTATGCTTAGACTGGGA
520 CTGTCGCAACCTTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* * * * *
17005023 ATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCTCTCAGCCGGCAAAAGGGG
585 ATGAACTCCGTATGCC--A--C-ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
* ** * * *
17005088 C-GAGATGCACAAGATGGGGATCGATCGGGTCCCCCTCTGCATGCTGTCGATCCTGCTGCCGCAA
645 CTG-GATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAA
** ** * * *
17005152 CCCTCAATCCAATTCGATCTTAGACTGGGAATGAACTCCATATGCCTGAGCCAACCGACT--AAC
709 CCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA-TGAAAC
* * * * * *
17005215 GAGC--G--GGT---GGGTGGGCACTACGCCGACTAAAGAGATGGGATGCGCAAGCCGCGGATCG
773 GAGCGAGCAGGTGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
*
17005273 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTT
838 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTT
* **
17005332 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTCCACGTGAAGTTTCATGGCAAGATTACTC
1 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * * **
17005397 GTTTTATATTTTTCATGATTTTGAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTAGAA
66 ATTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAA
* ** **
17005462 -TTAGTTTTCTCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACCAT
131 GGT-GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
17005526 TCAGCTAAAAACTC
195 TCAGCTAAAAACTC
17005540 AGTCGGCCAG
Statistics
Matches: 4915, Mismatches: 546, Indels: 263
0.86 0.10 0.05
Matches are distributed among these distances:
866 63 0.01
869 2 0.00
872 2 0.00
874 2 0.00
875 1 0.00
876 556 0.11
877 121 0.02
880 1 0.00
881 1 0.00
882 1 0.00
884 1 0.00
886 1 0.00
887 1 0.00
890 4 0.00
891 3 0.00
892 182 0.04
893 119 0.02
894 3 0.00
895 253 0.05
896 1188 0.24
897 151 0.03
898 5 0.00
899 6 0.00
900 104 0.02
901 110 0.02
902 380 0.08
903 356 0.07
904 520 0.11
905 52 0.01
908 2 0.00
910 1 0.00
912 1 0.00
914 1 0.00
915 40 0.01
916 292 0.06
917 285 0.06
918 41 0.01
920 2 0.00
922 2 0.00
923 1 0.00
925 2 0.00
926 56 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (896 bp):
ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
ATTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAA
GGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
GCGCACACCCCCGGCCCCCCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATG
CTCCGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
TGTCGCAACCTTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
TGAACTCCGTATGCCACACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCTGGAT
GCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCGG
TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGAGC
AGGTGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
GTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTT
Found at i:17001433 original size:26 final size:26
Alignment explanation
Indices: 17001396--17001447 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
17001386 CAGTTCGATA
* *
17001396 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTAGGAACGAACTCCGTATGC
17001422 TTAGACTAGGAACGAACTCCGTATGC
1 TTAGACTAGGAACGAACTCCGTATGC
17001448 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
TTAGACTAGGAACGAACTCCGTATGC
Found at i:17002329 original size:26 final size:26
Alignment explanation
Indices: 17002292--17002343 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
17002282 CGGTCCGATA
* *
17002292 TTAGACTAGGAATGAACTCTGTATGC
1 TTAGACTAGGAACGAACTCCGTATGC
*
17002318 TTAGACTGGGAACGAACTCCGTATGC
1 TTAGACTAGGAACGAACTCCGTATGC
17002344 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTAGGAACGAACTCCGTATGC
Found at i:17004095 original size:26 final size:26
Alignment explanation
Indices: 17004059--17004137 Score: 142
Period size: 26 Copynumber: 3.0 Consensus size: 26
17004049 CTGGTACGAT
17004059 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17004085 CTTAGACTGGGAATGAAC-CTCGTATG
1 CTTAGACTGGGAATGAACTC-CGTATG
17004111 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17004137 C
1 C
17004138 CTAAGTCAAC
Statistics
Matches: 51, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.02
26 49 0.96
27 1 0.02
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17005021 original size:26 final size:26
Alignment explanation
Indices: 17004985--17005037 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17004975 CTGGTTCGAT
17004985 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
* *
17005011 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
17005037 C
1 C
17005038 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:17005988 original size:467 final size:466
Alignment explanation
Indices: 17005083--17006006 Score: 1390
Period size: 468 Copynumber: 2.0 Consensus size: 466
17005073 AGCCGGCAAA
* *
17005083 AGGGGCGAGATGCACAAGATGGGGATCGATCGGGTCCCCCTCTGCATGCTGTCGATCCTGCTGCC
1 AGGGGCGAGATGCACAAGATAGGGATCGATCGGGTCCCCCTCTGCATGCTGTCGATCCTGCTACC
* *
17005148 GCAACCCTCAATCCAATTCGATCTTAGACTGGGAATGAACTCCATATGCCTGAGCCAACCGACTA
66 GCAACCCTCAATCCAATCCGATCTTAGACTGGGAATGAACTCCATATGCCTGAGCCAACCGACAA
* ** * ** *
17005213 ACGAGCGGGTGGGTGGGCACTACGCCGACTAAAGAGATGGGATGCGCAAGCCGCGGATCGATAGG
131 ACGAGCGGGCGGACGGGCACTACGCCGACCAAAGAGACAGGATACGCAAGCCGCGGATCGATAGG
* *
17005278 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAA
196 GTGGTAGGTGCGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAA
**
17005343 ATTCATACAATGGTCCCTTAAGCCTCCACGTGAAGTTTCATGGCAAGATTACTCGTTTTATATTT
261 ATTCATACAATGGTCCCTTAAGCCTCCACGTGAAGTTTCATGGCAAGACGACTCGTTTTATATTT
* ** *
17005408 TTCATGATTTTGAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTAGAATTAGTTTTCTC
326 TTCACGATTTTGAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTAGAAGGAGTTTTCGC
* *
17005473 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACCATTCAGCTAAAAAC
391 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA-AAATCAGCTAAAAAC
17005538 TCAGTCGGCCAG
455 TCAGTCGGCCAG
* * *
17005550 AGGGGCGGGATGCATAAGATAGGGATCGATCGGGTCCCCCTCTGCATTCT-TCCGATCCTGCTAC
1 AGGGGCGAGATGCACAAGATAGGGATCGATCGGGTCCCCCTCTGCATGCTGT-CGATCCTGCTAC
* ** *
17005614 CGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTGAGCCAACCTACG
65 CGCAACCCTCAATCCAATCCGATCTTAGACTGGGAATGAACTCCATATGCCTGAGCCAACCGAC-
* * * *
17005679 AAACGAGCGGGCGGACGGTCACTACGCC-AGCCAGAGAGACAGGATATGCAAGCCGTGGATCGAT
129 AAACGAGCGGGCGGACGGGCACTACGCCGA-CCAAAGAGACAGGATACGCAAGCCGCGGATCGAT
* *
17005743 AGGGTGGTAGGTGCGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTG
193 AGGGTGGTAGGTGCGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTG
* * *
17005808 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCGAGACGACTCGTTTTCTA
258 TAAATTCATACAATGGTCCCTTAAGCCTCCACGTGAAGTTTCATGGCAAGACGACTCGTTTTATA
*
17005873 TTTTTCACGATTTTTG-AAACTTTTTACGGTAT-G-GATTTTTTAAAATTTTTTTGGAAGGAGTT
323 TTTTTCACGA-TTTTGAAAACTTTTTACGGT-TCGAGATTTTTTAAAATTTTTTTAGAAGGAGTT
* * *
17005935 TTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATCAGCTAA
386 TTCGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATCAGCTAA
17006000 AAACTCA
451 AAACTCA
17006007 AAGTGCACAA
Statistics
Matches: 411, Mismatches: 41, Indels: 11
0.89 0.09 0.02
Matches are distributed among these distances:
466 17 0.04
467 193 0.47
468 195 0.47
469 6 0.01
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (466 bp):
AGGGGCGAGATGCACAAGATAGGGATCGATCGGGTCCCCCTCTGCATGCTGTCGATCCTGCTACC
GCAACCCTCAATCCAATCCGATCTTAGACTGGGAATGAACTCCATATGCCTGAGCCAACCGACAA
ACGAGCGGGCGGACGGGCACTACGCCGACCAAAGAGACAGGATACGCAAGCCGCGGATCGATAGG
GTGGTAGGTGCGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAA
ATTCATACAATGGTCCCTTAAGCCTCCACGTGAAGTTTCATGGCAAGACGACTCGTTTTATATTT
TTCACGATTTTGAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTAGAAGGAGTTTTCGC
CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATCAGCTAAAAACT
CAGTCGGCCAG
Found at i:17009801 original size:712 final size:713
Alignment explanation
Indices: 17008203--17010628 Score: 3464
Period size: 712 Copynumber: 3.4 Consensus size: 713
17008193 CATGCTGCCA
* * * * *
17008203 CAACCCTCTGTTCGGTCTGATCTTACACTGGGAATGAACTCCT-TATGCCTAAGCCAACCAATGA
1 CAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACT-CTGTATGCCTAAGCCAACCGACGA
* * * * **
17008267 AACGAGCGGGCGGGCAGGCACGTGGGCAGGCGGGCACTATGCCGACCAGAGAGGCGGGATTTGCA
65 AACGA----GCGGGC-GG---GTGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* **
17008332 AGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCC
122 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
*
17008397 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGA
187 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * *
17008462 CGACTCGTTTTCTATTTTTCACATTTTTTGAAACTTTTTGTGGTTCGGAATTTTATAAAATTTTT
252 CGACTCGTTTTCTATTTTTCAGA-TTTTTGAAACTTTTTGAGGTTCGGAATTTTTTAAAATTTTT
** * *
17008527 TCAGAAGGAATTTTGGCCCCAAACTTGGTAGACT-TGATCCTTGTATTTTTTTTGGCATGCATAA
316 TTGGAAGGAATTTTGG--CC--ACTTGGTA-AATGTGATCCTTGTATTTTTGTTGGCATGCATAA
17008591 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
376 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
17008656 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTATAATCTCAAATGCTCTTTAAGGGGGTGTG
441 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTG
* * *
17008721 AGTTCTCAAGGTTTGATGGGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
505 AGTTCTCGAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * *
17008786 ATCATGAGCGCACACCCCCCACGGCCCCCACGATCG-TCGGAAACCCAATGCCGCTCG-TAAGG-
570 ATCATGTGCGCACAACCCCC-CGGCCCCCCCGATCGCT-GGAACCCCAATGCCGC-CGATCAGGT
** * * * * * *
17008848 TCTCCCGGTGATGCTCCGACGATGCTGCCCCGATGAAGTAAAATACGGCACCAGCACATGCTCGA
632 TCT-CCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCAA
* *
17008913 GCCCAGCATGGGCTGCCG
696 GCCCAGCATGTGCTGCTG
* * * * * * *
17008931 TAACCCTCAGTCTGGTCTGATCTTAGATTGGGAATGAGCTCCGTATGCGTAAGGCAACCGACGAA
1 CAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAA
* * * * * ** * *
17008996 ATGAACGGGCTGGCGGGTGGGAAGGCCCTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
66 ACGAGCGGGCGGGTGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* ** *
17009061 TCGATAGGGTGGTTGGTGGGTTTAGGCACATCTTCATATTTCTGTATGCCAATGCCATTTTTGTG
131 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATG
* *
17009126 GCTTATAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGGCTCGTT
196 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * *
17009191 TTCTATTTTTCATGATTTTTGAAACATTTTGCGGTTCGGAATTTTTTTAAATTTTTTTGGAAGGA
261 TTCTATTTTTCA-GATTTTTGAAACTTTTTGAGGTTCGGAATTTTTTAAAATTTTTTTGGAAGGA
* *
17009256 TTTTTGG-C-CTTCGTAAATGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAA
325 ATTTTGGCCACTTGGTAAATGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAA
*
17009319 AAACTCGAAGTGTACAAGATTCTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
390 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
*
17009384 GGCTACTGGTAGCAAACCTGTAAAATCTCGAAATGCTCTTTAAGGGGTGTGAGTT-TCGAGGTTT
455 GGCTACTGGCAGCAAACCTGTAAAATCTC-AAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTT
*
17009448 GATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACA
519 GATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
*
17009513 ACCCCCTGGCCCCCCCGATCGCTGGAACCCCAATGCCGCCGATCAGGTTCTCCGACGATGCTCCG
584 ACCCCCCGGCCCCCCCGATCGCTGGAACCCCAATGCCGCCGATCAGGTTCTCCGACGATGCTCCG
* *
17009578 ACGATGGTGCCCCGACGAAGAAAAATGCGACACAAGCACATGCCCAAGCCCAGCATGTGCTGCTG
649 ACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCTG
* * *
17009643 CAACCCTCAGTCCGGTCCGATCATAGACTAGGAATGAACTCTGTATGCCTAAGCCAACCGACGAA
1 CAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAA
* * *
17009708 ACGAGCGGGCGGGTGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGAGGCGCAAGCTGTGGA
66 ACGAGCGGGCGGGTGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
*
17009773 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
131 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATG
* * *
17009838 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATAGTAAGACGACTCATT
196 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* *
17009903 TTCTATTTTTCACGATTTTTGAAACTTTTTGAGGTTTGGGATTTTTTAAAATTTTTTTGGAAGGA
261 TTCTATTTTTCA-GATTTTTGAAACTTTTTGAGGTTCGGAATTTTTTAAAATTTTTTTGGAAGGA
* * * * *
17009968 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAAATCAG
325 ATTTTGG--CC--ACTTGGTAAATGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAG
* * *
17010033 CTAAAAACTTGAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAAACTT
386 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* *
17010098 TAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTCAGGGGTGTGAGTTCTCGAGG
451 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGG
*
17010163 TTTGATGAGAGATAGGAGGCCAATATAAGGGCCAAGTAGCC-GCACCCATCGCACATCATGTGCG
516 TTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTA-CCAGCACCCATCGCACATCATGTGCG
* *
17010227 CACAACCCCCCCCAGCCCCCCCGATCGCTGGAACCCCAATGCCGCCGATCAGGTTCTCTGACGAT
580 CACAA--CCCCCCGGCCCCCCCGATCGCTGGAACCCCAATGCCGCCGATCAGGTTCTCCGACGAT
* *
17010292 GCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCGCATGCCCAAGCCCAGCATGTG
643 GCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTG
17010357 CTGCTG
708 CTGCTG
* * *
17010363 CAACCCTCGGTCCGATTTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGAC-AA
1 CAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAA
* * * *
17010427 A--A-TGAGC----GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCTGTCGA
66 ACGAGCGGGCGGGTGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* *
17010485 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTACGTGCCAATGCCATTTTTATG
131 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATG
*
17010550 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCTTGGCAAGACGACTCGTT
196 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
17010615 TTCTATTTTTCAGA
261 TTCTATTTTTCAGA
17010629 CACTTCAATG
Statistics
Matches: 1536, Mismatches: 145, Indels: 51
0.89 0.08 0.03
Matches are distributed among these distances:
711 4 0.00
712 579 0.38
713 80 0.05
714 152 0.10
715 14 0.01
716 3 0.00
717 26 0.02
718 208 0.14
719 5 0.00
720 403 0.26
721 1 0.00
723 1 0.00
724 5 0.00
727 1 0.00
728 54 0.04
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.27
Consensus pattern (713 bp):
CAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAA
ACGAGCGGGCGGGTGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATG
GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
TTCTATTTTTCAGATTTTTGAAACTTTTTGAGGTTCGGAATTTTTTAAAATTTTTTTGGAAGGAA
TTTTGGCCACTTGGTAAATGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAA
AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGA
TGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAAC
CCCCCGGCCCCCCCGATCGCTGGAACCCCAATGCCGCCGATCAGGTTCTCCGACGATGCTCCGAC
GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCTG
Found at i:17010948 original size:26 final size:26
Alignment explanation
Indices: 17010919--17010974 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
17010909 CTGGTCCGAT
17010919 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17010945 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17010971 CTTA
1 CTTA
17010975 AGTCAACCCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17011852 original size:26 final size:26
Alignment explanation
Indices: 17011823--17011874 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
17011813 TCCGATCTTG
*
17011823 GACTGGGAATGAACTCCGTATGCTTA
1 GACTGGGAATGAACTCCATATGCTTA
17011849 GACTGGGAATGAACTCCATATGCTTA
1 GACTGGGAATGAACTCCATATGCTTA
17011875 AGTCAACCCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
GACTGGGAATGAACTCCATATGCTTA
Found at i:17012365 original size:902 final size:900
Alignment explanation
Indices: 17010622--17013848 Score: 4209
Period size: 902 Copynumber: 3.6 Consensus size: 900
17010612 GTTTTCTATT
* *
17010622 TTTCAGACACTTCAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
1 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* *
17010687 TGAGTTCTTGAGGTTTGGTGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
66 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * * ** * *
17010752 ACATCATGTGCGCACACCCCCCCGGCCCCCCCAATCGTCGAAATCGTAATACCGTCGGTCAGGTT
131 ACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCCT-GGAACCCCAATGCCGCCGGTCAGGTT
* ** *
17010817 CTCCTGCGATGCTCCGACGATGGTGCCCCGGTGAAGAAATATACGACACCAGCACATGCCCGAGC
194 CTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCCGAGC
* * *
17010882 CGAGCATGTGCTACCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
259 CCAGCATGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * *
17010947 TAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCCACGAAACGAACGCGCGGGCGCTCAGCCG
324 TAGACTGGGAATGAACTCCATATGCTTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * **
17011012 TCCAGAGGGGCGGGATGCGCAAG-CGGCTGATTGA-CCAAGTCCCCCTCTACGTGCTGCCGATCC
389 ACCAGAGGGGCGGGATGCGCAAGCCGG--GGTTCAGCCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * * *
17011075 TGTTGCCACAACCCTCAGTC-CATCCAATCTTAGACTGGGAATGAACTCCGTATACCTAAGCTAA
452 TGCTGCCGCAACCCTCAGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
17011139 CTGACGAAACGAGCGGGTGGGCAAGCA-CGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
517 CCGACGAAACGAGCAGGCGGGC-GGGAGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
* * * *
17011203 CGCCGTGGATCGATAGGGTGGTAGGTGGGTTGAGGGACATCTTCATATTTCTGCGTGCCAATGCC
581 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA-TTCT-CGTGTCAATGCC
*
17011268 A-TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAACCCTTCACGTGAAGTTTCATGGCAAGA
644 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * *
17011332 CGACTCGTTTTCTATTTTTCATGATTTTCAAAAATTTTTACGGCT-GAAGATTTTTTAAAATTTT
709 CGACTCGTTTTCTATTTTTCAAGATTTTCAAAACTTTTTACGGTTCG-AGATTTTTTAAAATTTT
* *
17011396 TTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCCTGTATTTTTTTTGGCATGCACAA
773 TTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGTCGTGATCCTTGTATTTTTTTTGGCATGCACAA
17011461 AAAAATTCAGCTAAAAACTCGCAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
838 AAAAATTCAGCTAAAAACTCGCAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
*
17011524 TTTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
1 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* *
17011589 TGAGTTCTCGAGGTTTGATGATGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAGCCATCGC
66 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* *
17011654 ACATCATGTGCGCACACCCCCC-GCCCCCCCGATCACTAGAACCCCAATGCCGCCGGTCAGGATC
131 ACATCATGTGCGCACACCCCCCGGCCCCCCCGATC-CTGGAACCCCAATGCCGCCGGTCAGGTTC
* * * *
17011718 TCCGGCAATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGC-AGCACCAGCACGA-GCACGAG
195 TCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGA-CACCAGCAC-ATGCCCGAG
* * * *
17011781 CCCAGCATGTGCTGCCGTAACCCTCGGTCCAGTCCGATCTTGGACTGGGAATGAACTCCGTATGC
258 CCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
*
17011846 TTAGACTGGGAATGAACTCCATATGCTTAAGTCAACCCATGAAACGAGCGTGCAGGG-GCTCAGT
323 TTAGACTGGGAATGAACTCCATATGCTTAAGTCAACCCACGAAACGAGCGTGC-GGGCGCTCAG-
* ** * *
17011910 CCG-CCAGAGGGGCGGGATGCGCAAGCCGGGGTTCAGCCGGGTCCTCCTCTGTGTGCTACCGATA
386 CCGACCAGAGGGGCGGGATGCGCAAGCCGGGGTTCAGCCGGGTCCCCCTCTACGTGCTGCCGATC
* * * ** *
17011974 CTGCTACCGTAACCCTCCGTCTGATCTGATCTTAGGCTGGGAATGAACTCCGTATGCCTAAGCCA
451 CTGCTGCCGCAACCCTCAGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
17012039 ACCGACCAAACGAACAGGCGGACGGGAGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
516 ACCGACGAAACGAGCAGGCGGGCGGGAGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
* *
17012104 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCATCATATCTCTACATGTCAATGCC
581 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT-TCT-CGTGTCAATGCC
* * * *
17012169 ATTTTTATGGCTTCTAAATTCATACAATGGACCCTTAAGCCTTGACGTGAAGTTTCATGTCAAGA
644 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* ** * *
17012234 CGACTCGTTTTCTATTTTCCAAGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTTAAATTTTT
709 CGACTCGTTTTCTATTTTTCAAGATTTTCAAAACTTTTTACGGTTCGAGA-TTTTTTAAAATTTT
* * *
17012299 TTC-AAAGGAGCTTTGGCCCCAAACATGGTTGTCGTGATCCTTGTATTTTTTTTGGCATGCACAA
773 TTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGTCGTGATCCTTGTATTTTTTTTGGCATGCACAA
* * * * * *
17012363 AAAAATTCATCAAAAAACTCACGGTGTACGAGATTTTGTGACCATTTGAAAAAAGTGTCCCTA
838 AAAAATTCAGCTAAAAACTCGCAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* *
17012426 TTTCAGACACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTGAAATGCTCTTTAAGGGGGTG
1 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * * *
17012491 TGAGTTCTCAAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCTAAGTACCAGCACCCATTGC
66 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * *
17012556 ACATCATGTGCGCACACCCCCCGGCACCCTCGATCGCCGGAACCCCAGTGCCGCCGGTCAGGTTC
131 ACATCATGTGCGCACACCCCCCGGCCCCCCCGATC-CTGGAACCCCAATGCCGCCGGTCAGGTTC
** *
17012621 T-C--C-A-G-T-----GATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCC
195 TCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCCGAGCC
* * * * * * **
17012675 TAGCATGTGCTATCGTAACCTTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCTATATGCTT
260 CAGCATGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * * * * *** *
17012740 AGTCTGGGAATGAACT-TAGTGTGCCTAAGTCAACCCACAAAACGAGCGTGCCAACGCTCAACCG
325 AGACTGGGAATGAACTCCA-TATGCTTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * *
17012804 GCCAGAGGGGCGGGATGCGTAAGCCGGGGATC-GACCGGGTCCCCCTCTACATGCTGCCAATCCT
389 ACCAGAGGGGCGGGATGCGCAAGCCGGGGTTCAG-CCGGGTCCCCCTCTACGTGCTGCCGATCCT
* * * * * * ** * *
17012868 GCTGCTGCAACCCACGGTCTGGTGCGATCTTATG-CTGGGAATGAACTTTGTATGACGAAGCCAA
453 GCTGCCGCAACCCTCAGTCTGATCCAATCTTA-GACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * ** *
17012932 CCAACGAAACGAGCAGGCGGGCGGGCGGGAGGGCACTACGTCGGAGAGAGAGACGGGATGCGCGA
517 CCGACGAAACGAGCAGGCGGGCGGGAGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
*
17012997 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGTCACATCTTCATAATTCT-GTGTGCAATGCCA
582 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT-ATTCTCGTGT-CAATGCCA
* * *
17013061 TTTTTATGGCTTGTAAATTCAAACAGTGGTCCCTTAAGCCTTCACGTGAAATTTCATGGCAAGAC
645 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
17013126 GACTCGTTTTCTATTTTTCATA-ATTTTCAAAACTTTTTACGGTTC-AGGATTTTTTAAAATTTT
710 GACTCGTTTTCTATTTTTCA-AGATTTTCAAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTT
* * * *
17013189 TTCGGAAGGAGTTTTGGCCCAAAACTTGGTAGAT-GGGATCCTTGTATTTTTGTTGGCATGCACA
773 TTCGAAAGGAGTTTTGGCCCCAAACTTGGTAG-TCGTGATCCTTGTATTTTTTTTGGCATGCACA
* *
17013253 AAAAAATTCAGCTAAAAACT-GAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCA
837 AAAAAATTCAGCTAAAAACTCG-CAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * *
17013317 TTTCAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGGTCTTTAATGGGGTG
1 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
17013382 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
66 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
** * *
17013447 ACATCATGTGCGCACACCCCCTAG-CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTC
131 ACATCATGTGCGCACACCCCCCGGCCCCCCCGATCCT-GGAACCCCAATGCCGCCGGTCAGGTTC
* * * *
17013511 TCCGGTGATGCTCCGACGATGGTACCCTGACGAAGAAAAATACGACACCAGCATATGCCCGAGCC
195 TCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCCGAGCC
* *** * * *
17013576 CAACATGTGCTGTTGCAACCCTCGATCCGGTCTGATTTTAGACTGGGAATGAACTCCGTATGCTT
260 CAGCATGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * * **
17013641 AGACTGGGAATAAACTCCGTACGCCTT-AGTCAACCCACGAAATAAGCGTGCGGGCGCTCAGCCG
325 AGACTGGGAATGAACTCCATATG-CTTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * * * * *
17013705 ACCAGTGGGGCGAGATGTGCAAGCCGAGGGTT-GGCCGGGTCCCCTTCTATGTGCTGCTGATGCT
389 ACCAGAGGGGCGGGATGCGCAAGCCG-GGGTTCAGCCGGGTCCCCCTCTACGTGCTGCCGATCCT
* * * *
17013769 GCTGTCGCAACCCTCAGTTTGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAAC
453 GCTGCCGCAACCCTCAGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
*
17013834 CGACGAAACAAGCAG
518 CGACGAAACGAGCAG
17013849 AGAGGCGAAG
Statistics
Matches: 2010, Mismatches: 270, Indels: 91
0.85 0.11 0.04
Matches are distributed among these distances:
890 54 0.03
891 363 0.18
892 350 0.17
893 3 0.00
894 1 0.00
895 1 0.00
896 1 0.00
897 1 0.00
898 1 0.00
899 6 0.00
900 260 0.13
901 414 0.21
902 502 0.25
903 53 0.03
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.24
Consensus pattern (900 bp):
TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
ACATCATGTGCGCACACCCCCCGGCCCCCCCGATCCTGGAACCCCAATGCCGCCGGTCAGGTTCT
CCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCCGAGCCC
AGCATGTGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
GACTGGGAATGAACTCCATATGCTTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGAC
CAGAGGGGCGGGATGCGCAAGCCGGGGTTCAGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGCT
GCCGCAACCCTCAGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
CGAAACGAGCAGGCGGGCGGGAGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTCTCGTGTCAATGCCATTTTTA
TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
TTTTCTATTTTTCAAGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAG
GAGTTTTGGCCCCAAACTTGGTAGTCGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTC
AGCTAAAAACTCGCAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
Found at i:17013959 original size:26 final size:26
Alignment explanation
Indices: 17013930--17013980 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17013920 CCAATTTTAA
* *
17013930 ACTGGGAATGAACTCCGTTTGCTTAG
1 ACTGGGAAAGAACTCCGTATGCTTAG
17013956 ACTGGGAAAGAACTCCGTATGCTTA
1 ACTGGGAAAGAACTCCGTATGCTTA
17013981 AGTCAGCCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
ACTGGGAAAGAACTCCGTATGCTTAG
Found at i:17014114 original size:313 final size:313
Alignment explanation
Indices: 17013565--17014155 Score: 789
Period size: 313 Copynumber: 1.9 Consensus size: 313
17013555 ACACCAGCAT
** ** *
17013565 ATGCCCGAGCCCAACATGTGCTGTTGCAACCCTCGATCCGGTCTGATTTTAGACTGGGAATGAAC
1 ATGCCCGAGCCCAACATGTGCTGTCACAACCCTCGATCCGGTCCAATTTTAAACTGGGAATGAAC
* *
17013630 TCCGTATGCTTAGACTGGGAATAAACTCCGTACGCCTTAGTCAACCCACGAAATAAGCGTGCGGG
66 TCCGTATGCTTAGACTGGGAATAAACTCCGTACGCCTTAGTCAACCCACGAAACAAGCGTGCGGC
* * * * * * *
17013695 CGCTCAGCCGACCAGTGGGGCGAGATGTGCAAGCCGAGGGTTGGCCGGGTCCCCTTCTATGTGCT
131 CGCTCAGCCGACCAGAGGGGCGAGATGCGCAAGCCGAGGGTCGACCAGGTCCCCCTCTACGTGCT
* * *
17013760 GCTGATGCTGCTGTCGCAACCCTCAGTTTGGTCCAATCTTAGACTGGGAATGAACT-CTGTATGC
196 GCTGATCCTGCTGCCGCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTAC-GTATGC
17013824 CTAAGCCAACCGACGAAACAAGCAGAGAGGCGAAGAAAAATGCAGCACCGGTAC
260 CTAAGCCAACCGACGAAACAAGCAGAGAGGCGAAGAAAAATGCAGCACCGGTAC
* *
17013878 ATGCCCGAGCCCAGCATGTGCTGTCACAACCCTCGGTCCGGTCCAATTTTAAACTGGGAATGAAC
1 ATGCCCGAGCCCAACATGTGCTGTCACAACCCTCGATCCGGTCCAATTTTAAACTGGGAATGAAC
* * * *
17013943 TCCGTTTGCTTAGACTGGGAA-AGAACTCCGTATG-CTTAAGTC-AGCCATCGAAACGAGCGTGC
66 TCCGTATGCTTAGACTGGGAATA-AACTCCGTACGCCTT-AGTCAACCCA-CGAAACAAGCGTGC
* * * ** *
17014005 GGCCGCTCAGCCGGCTAGAGGGGCGGGATGCGCAAGCCG-GGGATCGATTAGGTCCCCCTCTGCG
128 GGCCGCTCAGCCGACCAGAGGGGCGAGATGCGCAAGCCGAGGG-TCGACCAGGTCCCCCTCTACG
* * * *
17014069 TGCTG-TCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGTCTTGGAATGAACTACGT
192 TGCTGCT-GATCCTGCTGCCGCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTACGT
17014133 ATGCCTAAGCCAACCGACGAAAC
256 ATGCCTAAGCCAACCGACGAAAC
17014156 GAGCGGGCGG
Statistics
Matches: 239, Mismatches: 33, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
312 12 0.05
313 226 0.95
314 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (313 bp):
ATGCCCGAGCCCAACATGTGCTGTCACAACCCTCGATCCGGTCCAATTTTAAACTGGGAATGAAC
TCCGTATGCTTAGACTGGGAATAAACTCCGTACGCCTTAGTCAACCCACGAAACAAGCGTGCGGC
CGCTCAGCCGACCAGAGGGGCGAGATGCGCAAGCCGAGGGTCGACCAGGTCCCCCTCTACGTGCT
GCTGATCCTGCTGCCGCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTACGTATGCC
TAAGCCAACCGACGAAACAAGCAGAGAGGCGAAGAAAAATGCAGCACCGGTAC
Found at i:17016624 original size:26 final size:26
Alignment explanation
Indices: 17016595--17016647 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17016585 CTGATCCGAT
*
17016595 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
17016621 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17016647 C
1 C
17016648 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17017002 original size:905 final size:900
Alignment explanation
Indices: 17014797--17019296 Score: 5984
Period size: 905 Copynumber: 5.0 Consensus size: 900
17014787 CGAGCCCAGG
17014797 CTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
1 CTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * *
17014862 CGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGACGGGATGCGCAAGTCGAGGATCGACCCGGTCCC
66 CGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCG-GGATCGACCGGGTCCC
* * ** * ** *
17014927 CCTCTGCGTGCTACCGATCCTGCTGTTGCAACCCTCAGTTTGGTCCAATCTTGGACTGGGAATGA
130 CCTCTACGTGCTATCGATCCTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGA
* *
17014992 ACTCCGTATGCCTAAGCCAACTGACGAAACGA---GTGGGCGGGCGGGCGGGCACTACGTCGGCC
195 ACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCGGGCGGGCGGGCGGGCACTACG-CGGCC
17015054 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
259 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
* *
17015119 TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCATTAAGCCTTCACG
324 TTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
* * * * *
17015184 TGAAGTTTCATGGCCAGACGGCTCGTTGTCCATTTTTCATGATTTTTGAAACTTTTTACGGTTC-
389 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCA
* * *
17015248 GAGATTTTTTAAAACTTTTTCGGAAGCAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTAT
454 G-GATTTTTTAAAATTTTTTCGGAAGGAGTTTT-GGCCCAAACTTGGTAGACGTGATCCTTGTAT
*
17015313 TTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTT
517 TTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
*
17015378 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAAT
582 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* * *
17015443 GCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATCAGGGAAAGGGGGCCAATATAAGGGCCAAG
647 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* ** * *
17015508 TACCAGCACCCATCACACATCATGTGCGCACA-CCCCCTAG-CCCCCCGATCGTCGGAACCCTAT
712 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCCGACCCCCCGATCGCCGGAACCCTAA
* * * * *
17015571 TGCCGTCGGTCAGGTTCTCCGATGATGCTCCGGCAACGGTGCCCCGACGAAGAAAAATGTGGCAC
777 TGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCAC
* * * *
17015636 CAGCACATG-CCTAAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGA-CTGATCTTAGA
842 CAGCACATGCCCT-AGCCCAGCATGTGCTGCCGCAACCCTCGATC-CGATCCGATCTTAGA
* * * * *
17015695 CTAGCAATGAACTCTGTATGCTTAGAC-AGGGAATGAACTCCATATGCCTAAGTCAACCGACGAA
1 CTGGGAATGAACTCCGTATGCTTAGACTA-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* *
17015759 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGCATCGATCGGGTCC
65 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGG-ATCGACCGGGTCC
* * * * * * **
17015824 CCCTCTACGTGCTACCGATCCTACTACCGTAACCCT-AGGTCTGATCCGATAATAGACTGGGAAT
129 CCCTCTACGTGCTATCGATCCTGCTGCCGCAACCCTCA-GTCTGGTCTGATCTTAGACTGGGAAT
* * * *
17015888 GAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCGGGCAGGCGGGTGGGCGGGCATTACGCAG
193 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GGCGGGCGGGCGGGCGGGCACTACGC-G
* * **
17015953 GCCAAAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGCATAGGCACATCTTC
256 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
*
17016018 ATATTTCTACATACCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
321 ATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * *
17016083 ACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGT
386 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGT
* * *
17016148 TCAGGATTTTTTAAAATTTTTTTGGAAGGGGTTTTGGTCCCAAACTTGGTAGACATGATCCTTGT
451 TCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGT
* * * *
17016213 ATTTTTATTGGCATGCACAATAAA-ATTCAGCTAGAAACTCAAACTGTACAAGATTTTGTGACCA
515 ATTTTTGTTGGCATGCACAA-AAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
17016277 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
579 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* * *
17016342 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGATTGATGAGGGATAGGGGGCCTATATAAGGTCC
644 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* ** * * *
17016407 AAGGACCAGCACCCATTACACATCATGTGTGCACACCCCCCCCGACATCCCCGATCACCGGAACC
709 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCCGAC-CCCCCGATCGCCGGAACC
* * * * * *
17016472 CCAATGCCGGCGGTTAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGCGAGGAAAAATGTG
773 CTAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCG
** * *
17016537 GCACCAGCACATGCCCTAGCCCAGCATTGTGCTGCAACAACCCTCAATCTGATCCGATCTTAGA
838 GCACCAGCACATGCCCTAGCCCAGCA-TGTGCTGCCGCAACCCTCGATCCGATCCGATCTTAGA
*
17016601 CTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAA
1 CTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * * * * *
17016666 CAAGCGTGCGGGCGCTCAACCGGCAAGAAGGGTAGGATACGTAAGCCAGGGATCGA-CGGGTCCC
66 CGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCC-GGGATCGACCGGGTCCC
* *** * * * * * ***
17016730 CCTCTACGTGCTGTCGATTAGGCTACCACAACCCTCAGTCCGGTTTGATGTTAGACTATTAATGA
130 CCTCTACGTGCTATCGATCCTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGA
* *
17016795 ACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGACGGGTGGGCGGGCGGGCACTACGTCGGC
195 ACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG-CGGGCGGGCGGGCGGGCACTACG-CGGC
* *
17016860 CAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAG
258 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
*
17016925 ATTCCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
323 ATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* ** *
17016990 GTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGATTTTCAAAACTTTTTATGGTTC
388 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTC
* * *
17017055 AGGATTTTTGAAAATTTTTTCAGAAGGAGTTTTGGCTTCAAACTTGGTAGACGTGATCCTTGTAT
453 AGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC-CCAAACTTGGTAGACGTGATCCTTGTAT
* * * *
17017120 TTTTGTTGGCCTGCATAAAAAAATTCAGCTAAAAACTCGAGGTGTACAAGATTTTGTGACCATTT
517 TTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
* *
17017185 AAAAAAAGTGTCCCAATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
582 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
**
17017250 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCTTG
647 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* * * *
17017315 TACCAGCACCCGTCGCACATCATGTGCGCACA--CCCCTCGACCCCCCTGATCGCCTGAACCCCA
712 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCCGACCCCCC-GATCGCCGGAACCCTA
** * * * * * *
17017378 ATGCCACCGGTCATGTTCTCCGGCGATGCTCAGGCGATGGTGCCCTGACGAAGAAAAATACGGCA
776 ATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCA
* *
17017443 CCAGCACATG-CCTGAGCCCAACATGTGCTACCGCAA-CC-C--T-CG----G-TC-----
841 CCAGCACATGCCCT-AGCCCAGCATGTGCTGCCGCAACCCTCGATCCGATCCGATCTTAGA
* * *
17017488 C--GG--T---CT--G-A-CCTTAGACTGGGAGTGAACTCCGTATGCCTAAGTCAACCCACGAAA
1 CTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * * * *
17017542 CGAGCGTACAGGCGCTCAGCCGGCCAGAGGGGTAGGATGCGTAAGCGGAGGATC-AGCTGGGTCC
66 CGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCG-GGATCGA-CCGGGTCC
* * * *
17017606 CCCTCTACGTGCTGTCGATCCTGCTGCCACAACCCTCAATCTGGTCTGATCTTAGACTAGGAATG
129 CCCTCTACGTGCTATCGATCCTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATG
* * * ***
17017671 AACTCCGTATGCCTAAGCCAACTGATGAAACGA---GCGGGCGGGTGGGCGGGCACTACGCTTAT
194 AACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCGGGCGGGCGGGCGGGCACTACGC-GGC
*
17017733 TAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
258 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
** *
17017798 ATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAT
323 ATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* * * * *
17017863 GTGAAGTTTCATGGCAAGACGTCACGTTTTCTATTTTTCATGATTTTTGAAACTTTCTGCGGTTC
388 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTC
* *
17017928 GGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTAT
453 AGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGTAT
17017993 TTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
517 TTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
* * ** * ** *
17018058 GAAAAAAGTGTCCCCATTTTAGACCCTTTAAAAGTTGTTGGCAGCAAACCTGTAAAATCTAAAAT
582 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
*
17018123 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCGAG
647 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* * * *
17018187 TACCAGCACCCATCGCACATCATGTGCACACACCCCCCCCGGCCCACCCGATTGCCGAAACCCTA
712 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCCGACCC-CCCGATCGCCGGAACCCTA
* * * * *
17018252 ATGCCGTCGATCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCAGCGAAGAAAAAAGCGGCA
776 ATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCA
* * * *
17018317 CCAGCACATGCCC-ACCCCCAGCATGTGCTTCCGCAACCCTCGGTCCGGTCCGATCTTAGA
841 CCAGCACATGCCCTA-GCCCAGCATGTGCTGCCGCAACCCTCGATCCGATCCGATCTTAGA
* * * * * *
17018377 CTAGGAATGAACTCCATATGCTTAGAGTGGGAATGAACACTGTATGCCTAAGTCAACCCACGAAA
1 CTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* *
17018442 CGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATTC-ACTGGGTCC
66 CGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCC-GGGA-TCGACCGGGTCC
* * * * * * * *
17018506 CCCTTTGCGTGCT-TCCAACCCCGTTGCCGCAACCCTCATTCTGGTCTGGTCTTAGACTGGGAAT
129 CCCTCTACGTGCTAT-CGATCCTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAAT
* *
17018570 GAACTCCGTATGCCAAAGCCAACCGATGAAACGAGCAGGCGGGCGGGCGGGCGGGCACTACGCCG
193 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GGCGGGCGGGCGGGCGGGCACTACG-CG
* * * *
17018635 CCCAGAGAGACGAGATGCACAAGCCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
256 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* * *
17018700 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTCTAAATTCATACAGTGGTCCCTTAAGCCTTC
321 ATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
*
17018765 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTTGAAACTTTTTACGGT
386 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGT
** * * * *
17018830 TTGGGAGTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCGCCAAACTTGGGAGATGTGATCCTTGT
451 TCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC-CCAAACTTGGTAGACGTGATCCTTGT
* * *
17018895 ATTTATGTTGGCATGCACAAAAAGATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
515 ATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* * * *
17018960 TTGAAAAAAGTGTCCCCATTTTAGACACTTTAAAGGCTACTGGTAGCAAATCTGTAAAATCTCAA
580 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* * * * *
17019025 AGGCTCTTTAAGGGGATGTGAGTTCTTGAGGTTTGATGAGGCATAGGGGGCCAATATAAGGGACA
645 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
** * * * * **
17019090 AGTACCAGCACCCATCGCACATCATGTGCATACACCCGCCCCAGGTCCCCCCGATTGTCAAAACC
710 AGTACCAGCACCCATCGCACATCATGTGCGCACACCC-CCCC-CGACCCCCCGATCGCCGGAACC
* * * *
17019155 CTAATGCCGTAGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCAGTGAGGAAAAATGCG
773 CTAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCG
* * * *
17019220 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGATCCGGTTCGATCTTAGA
838 GCACCAGCACATGCCCTAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGATCCGATCTTAGA
17019283 CTGGGAATGAACTC
1 CTGGGAATGAACTC
17019297 TGAATGCCTA
Statistics
Matches: 3171, Mismatches: 356, Indels: 142
0.86 0.10 0.04
Matches are distributed among these distances:
872 50 0.02
873 418 0.13
874 105 0.03
875 9 0.00
876 87 0.03
877 92 0.03
878 2 0.00
879 2 0.00
880 2 0.00
883 2 0.00
884 2 0.00
885 2 0.00
887 1 0.00
889 1 0.00
891 2 0.00
892 2 0.00
893 2 0.00
896 2 0.00
897 5 0.00
898 198 0.06
899 2 0.00
900 178 0.06
901 8 0.00
902 485 0.15
903 104 0.03
904 424 0.13
905 697 0.22
906 278 0.09
907 9 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (900 bp):
CTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
CGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGATCGACCGGGTCCCC
CTCTACGTGCTATCGATCCTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAA
CTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCGGGCGGGCGGGCGGGCACTACGCGGCCAG
AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
TCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGG
ATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
GTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
AGCACCCATCGCACATCATGTGCGCACACCCCCCCCGACCCCCCGATCGCCGGAACCCTAATGCC
GTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGC
ACATGCCCTAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGATCCGATCTTAGA
Found at i:17020014 original size:26 final size:26
Alignment explanation
Indices: 17019978--17020028 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
17019968 CGGTCCAATC
17019978 TTAGACTGGGAATGAACTCTGTATGG
1 TTAGACTGGGAATGAACTCTGTATGG
17020004 TTAGACTGGGAATGAACTCTGTATG
1 TTAGACTGGGAATGAACTCTGTATG
17020029 CCTAAGTCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.12, G:0.29, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCTGTATGG
Found at i:17020887 original size:26 final size:26
Alignment explanation
Indices: 17020851--17020902 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
17020841 CCAGTCCGAT
*
17020851 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17020877 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17020903 TCTAAGCTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17022418 original size:904 final size:897
Alignment explanation
Indices: 17020115--17022570 Score: 3404
Period size: 896 Copynumber: 2.7 Consensus size: 897
17020105 ACTGTTACCA
* *
17020115 CAACCCTCAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAA
1 CAACCCTCAGAT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * *
17020180 ACGAGCGA-A-CGGGCAGGCGGGCACTACG-CCAGCCAGAGCGACGGGATGCGCAAGCTGTGAAT
65 ACGAGCGAGAGCGGGCAGG-GGGCACTACGTCGA-CCAGAGAGACGGGATGCGCAAGCTGTGGAT
* *
17020242 CGATAGTGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTACGG
128 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGG
* * * *
17020307 CTTGTAAATTCATACAATGGTTCCTTAAGCCTTCACGTGAGGTTTCATGGCAAGACGACCCATTT
193 CTTGTAAATTCATAC-ATTGTTCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * *
17020372 TCTATTTTTCATGATTTTTGAAAATTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGAAAAGTG
257 TCTATTTTTCATGA-TTTTGAAAATTTTTGCGGTTCGGGATTTTTTAAAATATTTTCGAAAAGAG
* * * * *
17020437 TTTTGGCCCCAAACTTGGTACACGTGATCCCTGTATTTTTGCTGGCATGCACAAAAAAATTCAGC
321 TTTTGGCCCCAAACCTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
* *
17020502 TAAAAACTCGAAGTGTAAAAGATTTTGCGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
386 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* *
17020567 AATGGCTACTGGTAGCAAACCTGTAAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCTCAAGG
451 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGG
17020632 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
516 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * *
17020697 ACACCCCCCCGACGCCCC-CGATCGCCGAAACCCCAATG-TCGCCGGTCAGGTTCTCTGGCGATG
581 AAACCCCCCCGAC-CCCCTCGATCGCCGGAACCCCAATGCT-G-CGGTCAGGTTCTCCGGCGATG
*
17020760 CTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGC
643 CTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACAAGCCCGAGCCCAGCATGTGC
* * * * * *
17020825 TGCCACAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAA
708 TGCCACAACCCTCAGTCCAGTCCGATCTCAGACTGGGAATAAACTCCGTATGCTTAGACTAGAAA
* * * * *
17020890 TGAACTCCGTATGTCTAAGCTAACCCATGAAACGAGTGTGCGGGTGCTCAGCCGGCAAGAGGGGC
773 TGAACTACGTATGTCTAAGCTAACCCACGAAACGAGCGTGCAGCTGCTCAGCCGGCAAGAGGGGC
* * * **
17020955 GGGATGCGCAAGCAGGGGATCAATCGGGTCCCCCTCTGTGTGCTACCAATCCTGCTATCG
838 AGGATGCACAAGCAGGGGATCAACCGGGTCCCCCTCTGCATGCTACCAATCCTGCTATCG
* * **
17021015 TAACCCTCAG-TCCGGTCTGATCTTAAACTACGAATGAACTCCGTATGCCTAAGCCAACCGACGA
1 CAACCCTCAGAT--GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * * *
17021079 AACAAGCG-G-GCGGGC---GGGCACTAC-TCCGGCCAGAGAGACTGGATGCGCAAGCCGTGGAT
64 AACGAGCGAGAGCGGGCAGGGGGCACTACGT-CGACCAGAGAGACGGGATGCGCAAGCTGTGGAT
**
17021138 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGGTATTTTTATGG
128 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGG
* *
17021203 CTTGTAAATTCATACAATTATTGCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
193 CTTGTAAATTCATAC-ATTGTTCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * * * *
17021268 TCTATTTTCCATGATTATTGAAAATTTTTACGATTCGAGATTTTTTAAAA-ATTTTTCGAAATGA
257 TCTATTTTTCATGATT-TTGAAAATTTTTGCGGTTCGGGATTTTTTAAAATA-TTTTCGAAAAGA
* ** * *
17021332 TTTTTGGCCCCAAAAGTGGTCGACATGATCCTTGTATTTTTGTTAGCATGCACAAAAAAATTCAG
320 GTTTTGGCCCCAAACCTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
* *
17021397 CTAAAAACTCGAAGTGTACAAGATTTTATGAGCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
385 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * **
17021462 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTATGGGGGTGTGAGTTTTTTAG
450 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAG
* *
17021527 GTTTGATGAGGGATAGGGGGCCAATATAAGGGTCAAGTACCAGCACCCATCGCACATCATGTGGG
515 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * *
17021592 CAAACCCCCCCGACCCCCTCGATCGTCGGAACCCCAATGCTGTCGATCAGGTTCTCCGACGATGC
580 CAAACCCCCCCGACCCCCTCGATCGCCGGAACCCCAATGCTG-CGGTCAGGTTCTCCGGCGATGC
* * ** *
17021657 TCC-AGCGTTGGTGCCCCGGCGAAGAAAAATGTGGCACCAGCACAAGCTCGAGCCCAGCATGTGC
644 TCCGA-CGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACAAGCCCGAGCCCAGCATGTGC
** * *
17021721 TGCCGTAACCCTCAGTCCGGTCTGATCTCAGACTGGGAATAAACTCCGTATGCTTAGACTAGAAA
708 TGCCACAACCCTCAGTCCAGTCCGATCTCAGACTGGGAATAAACTCCGTATGCTTAGACTAGAAA
* * * *
17021786 TGAACTATGTATG-CGTCAG-TCAACCCACGAAATGAGCGTGCAGCTGCTCAGCCGGCCAGAGGG
773 TGAACTACGTATGTC-TAAGCT-AACCCACGAAACGAGCGTGCAGCTGCTCAGCCGGCAAGAGGG
* * * **
17021849 GCAGGATGCACAAGCTGGGGATCGACCGGGAT-CCCCTCTGCATGCTGCTGATCCTGCTA-CTG
836 GCAGGATGCACAAGCAGGGGATCAACCGGG-TCCCCCTCTGCATGCTACCAATCCTGCTATC-G
* *
17021911 CAACCCTCAGAATGGTCTGATCTTAGACTGGGAATGAACTCGGTATGCCTAAGCAAACCGACGAA
1 CAACCCTCAG-ATGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
*
17021976 ACGAGCGGACGAGCGGGCAGGGGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGGTGTGGA
65 ACGAGC-GA-GAGCGGGCA-GGGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCTGTGGA
* * *
17022041 TCGATAGGGTGGTAGGTGGGATTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
127 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATG
*
17022106 GCTTGTAAATTCATACATTCGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
192 GCTTGTAAATTCATACATT-GTTCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* *
17022171 TTCTATTTTTCATGATTTTCGAAACTTTTTGCGGTTCGGGA-TTTTTAAAATATTTTCGAAAGGA
256 TTCTATTTTTCATGATTTT-GAAAATTTTTGCGGTTCGGGATTTTTTAAAATATTTTCGAAAAGA
* * * *
17022235 GTTTTGGCCTCAAACCTGGTAGTCTTGATCCTTGTATTTTTTTTTGGCATGCACAAAAAAATTCA
320 GTTTTGGCCCCAAACCTGGTAGACATGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCA
* *
17022300 ACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACT
384 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * *
17022365 TTAATGGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTACTCGA
449 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAA
* * *
17022430 GGTTTGATGAGGGATAGGGGGCTAATATAAGGGCCAAGTACCAGCACTCATCGCACATTATGTGC
514 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * * *
17022495 GCACACCCCCCCTCG-GCCCCTCCGATCGGCGGAACCCCAATGCCGCAGGTCAGGTTCTCCGGTG
579 GCA-AACCCCCC-CGACCCCCT-CGATCGCCGGAACCCCAATGCTGC-GGTCAGGTTCTCCGGCG
*
17022559 ATGCTCTGACGA
640 ATGCTCCGACGA
17022571 AGAACTCCAT
Statistics
Matches: 1371, Mismatches: 151, Indels: 62
0.87 0.10 0.04
Matches are distributed among these distances:
895 10 0.01
896 767 0.56
897 4 0.00
898 1 0.00
899 2 0.00
900 75 0.05
903 54 0.04
904 398 0.29
905 14 0.01
906 45 0.03
907 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (897 bp):
CAACCCTCAGATGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
CGAGCGAGAGCGGGCAGGGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCTGTGGATCGA
TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTT
GTAAATTCATACATTGTTCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
TTTTTCATGATTTTGAAAATTTTTGCGGTTCGGGATTTTTTAAAATATTTTCGAAAAGAGTTTTG
GCCCCAAACCTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGA
TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAAACC
CCCCCGACCCCCTCGATCGCCGGAACCCCAATGCTGCGGTCAGGTTCTCCGGCGATGCTCCGACG
ATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACAAGCCCGAGCCCAGCATGTGCTGCCACAA
CCCTCAGTCCAGTCCGATCTCAGACTGGGAATAAACTCCGTATGCTTAGACTAGAAATGAACTAC
GTATGTCTAAGCTAACCCACGAAACGAGCGTGCAGCTGCTCAGCCGGCAAGAGGGGCAGGATGCA
CAAGCAGGGGATCAACCGGGTCCCCCTCTGCATGCTACCAATCCTGCTATCG
Found at i:17024025 original size:17 final size:17
Alignment explanation
Indices: 17024003--17024036 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
17023993 TACAAGATTT
17024003 TGTGACCATTTGAAAAA
1 TGTGACCATTTGAAAAA
17024020 TGTGACCATTTGAAAAA
1 TGTGACCATTTGAAAAA
17024037 AGTGTCCCCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.12, G:0.18, T:0.29
Consensus pattern (17 bp):
TGTGACCATTTGAAAAA
Found at i:17024372 original size:26 final size:26
Alignment explanation
Indices: 17024343--17024392 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
17024333 CCAGTCCGAT
*
17024343 CTTAGATTGGGAATGAACTCCGTAGG
1 CTTAGACTGGGAATGAACTCCGTAGG
17024369 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
17024393 TGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTAGG
Found at i:17025129 original size:17 final size:17
Alignment explanation
Indices: 17025109--17025141 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
17025099 CCCCTGATAT
17025109 TCGGAACCCCAATGCCG
1 TCGGAACCCCAATGCCG
*
17025126 TCGGTACCCCAATGCC
1 TCGGAACCCCAATGCC
17025142 ACCGGTCAGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.42, G:0.21, T:0.15
Consensus pattern (17 bp):
TCGGAACCCCAATGCCG
Found at i:17025147 original size:17 final size:17
Alignment explanation
Indices: 17025114--17025147 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
17025104 GATATTCGGA
**
17025114 ACCCCAATGCCGTCGGT
1 ACCCCAATGCCACCGGT
17025131 ACCCCAATGCCACCGGT
1 ACCCCAATGCCACCGGT
17025148 CAGGTTCTCC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.44, G:0.21, T:0.15
Consensus pattern (17 bp):
ACCCCAATGCCACCGGT
Found at i:17026187 original size:26 final size:26
Alignment explanation
Indices: 17026151--17026203 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17026141 CTAGTCCGAT
* *
17026151 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
17026177 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
17026203 C
1 C
17026204 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:17027077 original size:26 final size:26
Alignment explanation
Indices: 17027038--17027087 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
17027028 TCGATCAAAT
17027038 CTTAGACTGAGAATGAACTCCGTACG
1 CTTAGACTGAGAATGAACTCCGTACG
*
17027064 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGAGAATGAACTCCGTA
17027088 TGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTACG
Found at i:17027688 original size:889 final size:887
Alignment explanation
Indices: 17022572--17034166 Score: 12657
Period size: 889 Copynumber: 13.0 Consensus size: 887
17022562 CTCTGACGAA
* * * * *
17022572 GAACTCCATATGCTTAGGCTGGGAATGAACTCCGTATGCCTAAGTCAACCTATGAAACGAGCATG
1 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* * * ** ** *
17022637 CGAGCACTCAGTCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGACCGATTCCCCTTCTACG
66 CGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACG
* * * ** * * * *
17022702 TGCTGCTGATCCTTCTGCCATAGCCCTCGGTCCGGTCCGATCTTAGACT-GGAATGAACTTCGTA
131 TGCTGCCGATCCTGCTACCGCAACCCTTGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
* * * * * *
17022766 TGCCTAAGCCAATCGATGAAATGAGCAGGCGGGCGGGCGGCCACTACGTCGGCCAGAGAGACGAG
196 TGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGG
* *
17022831 ATGCGCAAGCCGTGGATCGATAGGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGC
261 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGC
17022896 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
326 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* *
17022961 GGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT-CAGTTCGGGATTGTTTTA
391 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATT-TTTTA
*
17023025 AA-TTTTTTGAAAGCAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
455 AATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
17023089 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
520 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
*
17023154 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCGAATGCTCTTTAAGGG
585 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* *
17023219 GGTGTGAGTTCTCCAGGTTTGATGAGGGATACGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
650 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * * * * *
17023284 TCGTACATCATGAGCACACACCCCCCGACCCCCCCGATCGTCGGAAACCCAATGTCGTCGGTCAG
715 TCGCACATCATGTGCGCACACCCCCCG-GCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAG
17023349 GTT-CTCCAACGATGCTCCGGTGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCC
779 GTTGCT-C--CGA-----C---GATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCC
* *
17023413 AAGCCCAGCATGTGCTGCCACAA-C--C-G-TCG----G-TC-----C-------
833 GAGCCCAGCATGTGCTGCCGCAACCTTCGGTTCGATCCGATCTTAGACTGGGAAT
* * * * *
17023446 G-A-TCC-AAT-CTTAGACTGGGAATTAACTCTGTATCCCTAAGTCAACCCACGAAACGATCGTG
1 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* * * * * * * ** *
17023507 CGGACGCTCAGCCGGCCGGAGGGGCGGGACGTGCAAGTCGGGGATCGGCCGGGTCCCATTCTGCG
66 CGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACG
* * * *
17023572 TGCTGCGGATCCTGCTGCCGCAACCC-TCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGT
131 TGCTGCCGATCCTGCTACCGCAACCCTTGA-TCCGGTCCGATCTTAGACTGGGAATGAACTCCGT
* * *
17023636 ATGCCTAAGCCAATCGACGAAACGAGCGGGCTGGCGGGCGGGCACTATG-CAGGCCAGAGAGACG
195 ATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTC-GGCCAGAGAGACG
* * * * *
17023700 GGATGCACAAGCCGTGTATCGATAGGGTGTTAGGTGGGTTTAGGAACAGCTTCATATTTCTACGT
259 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGT
*
17023765 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTA
324 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* * * * **
17023830 ATGGCAAGATGACTCATTTTCTATTTTTCACGATTTTTAAAACATTTTAAGGTTCGGGATTTTTT
389 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTT
* * * * *
17023895 AAACTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTGGACGTGATCCTTGTATTTTTTTTGGCG
454 AAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
17023960 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAATGTGA
519 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC-A-A------G---ATTT------TGTGA
*
17024025 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATC
567 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* * * *
17024090 TCAAAATGCTCTTTGAGGAGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATAAAAG
632 TC-AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * *
17024155 GGCCAAGTACCACCACCCATCGCACATCATGTGCACACACCCCCCGGCCCCGCGATCGTCGGAAC
696 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAAC
* * * *
17024220 CCCAATGCCGCCGGTCAGGTT-CTCTGACGATGCTCCGGTGATAGTGCCCCGATGAAGAAAAATA
761 CCCAATGCCGTCGGTCAGGTTGCTC---CGA-----C---GATGGTGCCCCGGTGAAGAAAAATG
* * * * * * *
17024284 TGGCACCAGCACATGCACGAGCCCAGTATGTGTTACCGTAACACTT-GG-TCCAGTCCGATCTTA
815 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC-CTTCGGTTCGA-TCCGATCTTA
*
17024347 GATTGGGAAT
878 GACTGGGAAT
* * * *
17024357 GAACTCCGTAGGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTA
1 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* * * * *
17024422 CGGGTGCTCAGTCGGCCAGAGGGGCGGGAGGCGTAAGCCGGGGATCGGTCGGGTCCCCCTCTACG
66 CGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACG
* * ** * * * *
17024487 TGCTGCCCATCCTACTGTCGCAACCCTT-AGTTCGGTCCGATCTGAGA-TGAGAATGAACTCCCT
131 TGCTGCCGATCCTGCTACCGCAACCCTTGA-TCCGGTCCGATCTTAGACTGGGAATGAACTCCGT
* * * * * *
17024550 ATGCCTAAGCCAACCGATGAAACGA----GCGAGCGGGCAGGCACTATGCCGGCCAGAGAGATGG
195 ATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGG
* * * * * *
17024611 GATGCGCAAGCCATGGATCGATAGAGTGGTAGGTGGGTTTAAGCACATCTTCATATTTATGCATG
260 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTG
* * *
17024676 CCAATGCCATTTTTATGGCTTGTAAATTGATACAATGGTCCCTTAAGCCTTCACGTGAGGGTTCA
325 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * *
17024741 TGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTTGTGATTTTTTA
390 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTA
* * * *
17024806 AACTTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATCATCCTTGTATTTTTTTTTGGC
455 AA-TTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGC
* * *
17024871 ACGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAATTGAAAGAAGTG
518 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* *
17024936 TCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCACATGCTCTTTAAG
583 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* * *
17025001 CGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCCGTACC
648 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* *
17025066 CATCACACATCATGTGCGCACACCCCCCTCGGCCCCCTGATATTCGGAACCCCAATGCCGTCGGT
713 CATCGCACATCATGTGCGCACA-CCCCC-CGGCCCCC-------C-G-------AT--CGTCGGA
* * *
17025131 ACCCCAATGCCACCGGTCAGGTTCTCCGGTGACGCTCCGACGATGGTGCCCCGATGAAGAAAAAT
759 ACCCCAATG---CC-GTC-GG---TCAGGT--TGCTCCGACGATGGTGCCCCGGTGAAGAAAAAT
* * * * * * * * *
17025196 GCGGCACCAGCATATGCTCGAGCCCAGCCTCTACTGCCGCAACCTTTGGTCCGATCCAATCTTCG
814 GCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCTTCGGTTCGATCCGATCTTAG
*
17025261 ACTGAGAAT
879 ACTGGGAAT
* *
17025270 GAACTACGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTG
1 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* * * * *** * *
17025335 CGGGCGCTCAGTCAGCCAGAGGGGC-AGGATGCGTAATCTAAGGATCGGCCGGGTCCCACTCTAC
66 CGGGCGCTCAGCCGGCCAGAGGGGCGA-GATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTAC
* * * * * *
17025399 GTGGTGCCGATCCTGCTATCGTAACCC-TCAGTCCGATCCGATCTTAGACTGAGAATGAACTCCG
130 GTGCTGCCGATCCTGCTACCGCAACCCTTGA-TCCGGTCCGATCTTAGACTGGGAATGAACTCCG
* * * *
17025463 TATGCCTAAGCCAATCGACGAAACGAGTGGGCAGGCGGGCGGGCGGGTGGGCATTAC-ACTGGCC
194 TATGCCTAAGCCAACCGACGAAAC------G-A-GCGGGCGGGCGGGCGGGCACTACGTC-GGCC
* *
17025527 AGAGAGACGGGATGCACAAGCCGTGTATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
250 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
* * ** *
17025592 TTTCTGCATGCCAATGCCATTTTTATGGCAAGTAAAATCATACAATGGTCCCTTAAGCCTTCACG
315 TTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
* * * * *
17025657 TGAAGTTTCATGGCAAGATGACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTGTGGTTCA
380 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCG
** * *
17025722 GGATTTTTTAAACCTTTTTGGAAGGAGTTCTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
445 GGATTTTTTAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
* * *
17025787 TTGTTGGCATGCACAAAAAAATTCAGATAAAAACTCGTAGTGTACAGGATTTTGTGACCATTTGA
510 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
** * *
17025852 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTATCTGCAAACCTGTACAATCTCAAATGC
575 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* * *
17025917 TCTTTAAAGGGGTGAGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGTCAAGTA
640 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* *
17025982 CCAGCACCCATCGCACATCATGTGTGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGT
705 CCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGC
* * * * *
17026047 CATCGGTCAGGTT-CTCCGACGATGGTGCCCCGATGAAGAAATATGCAGCACCAGCACATGCCTG
769 CGTCGGTCAGGTTGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCG
* *
17026111 AGCCCAGCATGTGCTGCCGCAACCCTCGG-TCTAGTCCGATCTTAGACTGGGAAT
834 AGCCCAGCATGTGCTGCCGCAACCTTCGGTTCGA-TCCGATCTTAGACTGGGAAT
* * *
17026165 GAACTTCGTATGCTTAGACTGGGAAAGAACTCCGTATGCCTAAGTCAACCCACGAAATG-GCCGT
1 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG-CGT
* * * * *
17026229 GCGGGCGCTAAG-C--ACACGAGGGGCGGGATGCGTAAGCCGGGGAT-TGTCTGGGTCCCCCTCT
65 GCGGGCGCTCAGCCGGCCA-GAGGGGCGAGATGCGCAAGCCGGGGATCGGTC-GGGTCCCCCTCT
* * *
17026290 ACGTGCTGCCAATCCTGCTACCGCAACCC-TCAGTCCGGTCTGATCTTAGACTGGGAATGAACTC
128 ACGTGCTGCCGATCCTGCTACCGCAACCCTTGA-TCCGGTCCGATCTTAGACTGGGAATGAACTC
* * * * * *
17026354 TGTATACCTAAGCCAACCAACGAAACGAGCGGGTGGGCGGGCGGGCATTACGTCGGCCAAAGAGA
192 CGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGA
* * * *
17026419 CGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGATCTAGGCACATCTTCATATTTCTGC
257 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAC
* * *
17026484 ATTCCAATGCCATTTTTGTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
322 GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* * * *
17026549 TCATGGCGAGACAACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTT
387 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTT
* * * * *
17026614 TTAAACTTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGACTTGATCCTTGTATTTTT-TTT
452 TTAAATTTTTTTGA-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
* * * *
17026678 GCTATGCACAAAAGAATTTAGCGAAAAACTCGAAGTGTACAAGATTTTGTGACCATTAGAAAAAA
516 GC-ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
* *
17026743 GTGTCCCCATTTGAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTT
580 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
17026808 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
645 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
*
17026873 ACCCATCGCACATCATGTGCGCACACCCCTCCGGCCCCCTCGATTGTCGGAACCCCAATGCCGTC
710 ACCCATCGCACATCATGTGCGCACACCCC-CCGGCCCCC-CGATCGTCGGAACCCCAATGCCGTC
* * * **
17026938 GGTAAGGTTG-TCCGACGACGGTGCCCCGGCGAAGAAAAATGCGGCACC-GACACATGCCCGATT
773 GGTCAGGTTGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAG-CACATGCCCGAGC
* ** *
17027001 CCAGCATGTGTTGCCGCAACCTTCGGTTCGATCAAATCTTAGACTGAGAAT
837 CCAGCATGTGCTGCCGCAACCTTCGGTTCGATCCGATCTTAGACTGGGAAT
* * **
17027052 GAACTCCGTACGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATAAGCGTG
1 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* * ** * * * * **
17027117 TGGGCGCTCAGTCGGCCAGAGGTACGAGATGTGTAAGTCGGGGATCGGTCAGGTCCCCCTCTGTG
66 CGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACG
* * * * * *
17027182 TGCTGTCGATCCTACTACCCCAACCCTTGATCTGGTCTGATCTTAGACTGGGAATGAACTCCATA
131 TGCTGCCGATCCTGCTACCGCAACCCTTGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
* * * *
17027247 TGCCTAAGCCAACCGACGAAACGAGCAGACGGGCGGGCGGGCACTACGTCAGCCAGAGAGA-TGG
196 TGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGG
* * *
17027311 ATGCGCAAGCCGAGGATCGATAGGGTGGTTGGTGGGTTTAGGCACATCTTCATATTTCTATGTGC
261 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGC
** *
17027376 CAATGCCATTTTTATGGCTCATAAATTCATACAATGGTCCCTTAATCCTTCACGTGAAGTTTCAT
326 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* * * * *
17027441 GGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACATTTTACAGTTCGGGATTTTTTAA
391 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTT-A
* *
17027506 AATTTTTTTGAAAGGAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTTTTTGGCA
455 AATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCA
* * * *
17027571 TGCACAATAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGC
519 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
* ** * * *
17027636 CCCCATTTCAGACACTTTAGTAACAACTAGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGG
584 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* * *
17027701 GGGTGTGAGTTCTCAAGATTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
649 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * *
17027766 ATCGCACATCATGTGCGCACACCCCCCGGCCCTCCCGATCGTCGAAACCTCAATGCTGTCGGTCA
714 ATCGCACATCATGTGCGCACACCCCCCGGCCC-CCCGATCGTCGGAACCCCAATGCCGTCGGTCA
* * *
17027831 GGTT-CT-C--CGA--------C---GAAGAAAAATGTGACACCAGGACATGCCCGAGCCCAGCA
778 GGTTGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
*
17027881 TGTGCTGCCACAA-C--C----C--T-CGA---T---CT--G---
843 TGTGCTGCCGCAACCTTCGGTTCGATCCGATCTTAGACTGGGAAT
* * *
17027905 G---TCCG-AT-CTTAGAATGGGAATGAACT-TGATATGCCTAAGTCAACCCATGAAACGAGCGT
1 GAACTCCGTATGCTTAGACTGGGAATGAACTCCG-TATGCCTAAGTCAACCCACGAAACGAGCGT
* * * * * * ** *
17027964 GCGGGTGCTCAGCCGGTCAGAGGGG-TAGGATGTGCAAGTCGTGGATCGGTTTGGTCCCCCTCTG
65 GCGGGCGCTCAGCCGGCCAGAGGGGCGA-GATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTA
* * ** *
17028028 CGTGCTGCCGATCCTGCTACCGCAACCCTTGGTCTGACCCGATCTTAGACTAGGAATGAACTCCG
129 CGTGCTGCCGATCCTGCTACCGCAACCCTTGATCCGGTCCGATCTTAGACTGGGAATGAACTCCG
* *
17028093 TATGCCTAAGCCAACCAGA-GAAACGAGCGGTCGGGTAGGTGGGCGGGCACTACGTCGGCCAGAG
194 TATGCCTAAGCCAACC-GACGAAACGAGCGG--GCG--GGCGGGCGGGCACTACGTCGGCCAGAG
*
17028157 AGACGGGATGCGCAAGCCGTGGATCGATATGGTGGTAGGTGGGTTTAGGCACATCTTC--A----
254 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
* *
17028216 TA---GCCAATGCCATTTTTATGCCTTGTAAATTCATACAATGGTCCCTTAAGCCTTGACGTGAA
319 TACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
* * * ** ** *
17028278 GTTTCATGGCAAGACGACTCATTTTCTATTTTTAAGGATTTTCAAAACTTTTTGATGTTTGGGAT
384 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGAT
* * * *
17028343 TTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGTTAGACGTGGTCCTTGTATTCTTG
449 TTTTT-AAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
*
17028408 TTGGCATGCACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
513 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
17028473 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
578 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
* *
17028538 TTAAGGGGGTGTGAGTTCTCAAGGTTGGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
643 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * * *
17028603 GCACCCATTGCACATCATGTGCGCACACCCCCC-GCCCCCCGATCGCCGAAACCCCAATGCCGCC
708 GCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTC
* * * *
17028667 GGTCAGGTTTCTCCGACGATGCTCCGACGATGGTGCCCC-GCGAAGAAAATTACAGCACCAGCAC
773 GGTCAGG----T-------TGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCAC
* *
17028731 ATGCTCGAGCCCAGCATGTGCTGCCGCAA-C-AC---TCG----G---TT----T--G---
827 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCTTCGGTTCGATCCGATCTTAGACTGGGAAT
* ** * * *
17028771 G---TCC-AAT-CTTAGACAAGGAATGAACTCCTTATGCCTAAGTCAATCCACG-AACGAGAGTG
1 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* * * * * * * * * **
17028830 CGGGCGCTCAACCGACTAGAGGGGCGAAATCCGTAAGCCAGGGATCGGCCGAGT-CCCCTCCGCG
66 CGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACG
** * * ** * **
17028894 TGCTGCCGATCCTGCTGTCGCAACCCTCGGTCCGGTCTAATCTTAGATTGGGAATGAACTCTATA
131 TGCTGCCGATCCTGCTACCGCAACCCTTGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
* * * * * *
17028959 TG-CTAAGCCAACCGACGAAACGAACGGGCGGGTGGGTGGGCGAGCACTACGCCGGACAAAGAGA
196 TGCCTAAGCCAACCGACGAAACG-A---GCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGA
*
17029023 CGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAC
257 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAC
*
17029088 GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTGACGTGAAGTT
322 GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* * *
17029153 TCATGGCAAGACGAATCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTCGAGATTTT
387 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTT
* * * * ** ** * *
17029218 TTAAAATTTTTCGAAAGGTA-CTTTGGCCCCAAACATATTAGTTGTGATCCCTGTATTCTTGTTG
452 TTAAATTTTTTTGAAAGG-AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
* * * *
17029282 GCATGGACAAAAAAATTCTGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAT
516 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
* *
17029347 TGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTA
581 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
* * ** * *
17029412 AGGGGGTGTGAGTTATCAAGGTTTGATGAGGGATA-GCAGCTAATATAAGGGCCAAGTAACAGCA
646 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* *
17029476 CCCATCCCACATCATGTGTGCACACCACCCCTGGCACCCCCGATCGTCGGAACCCCAATGTCGCC
711 CCCATCGCACATCATGTGCGCACACC-CCCC-GGC-CCCCCGATCGTCGGAACCCCAA--T-GCC
* * * *
17029541 AGTCAGGTTCTCCGACGATGCTCCAACGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACA
770 -GTC-GG---T-C-AGGTTGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACA
* *
17029606 TGCCCGAGCCCAGCATGTGCTACCGCAAACCTT-GGTTTGATCCGATCTTAGACTGGGAAT
828 TGCCCGAGCCCAGCATGTGCTGCCGC-AACCTTCGGTTCGATCCGATCTTAGACTGGGAAT
* * * *
17029666 GAACTCCATATGCTTAGACTGGGAATGAACTTCATATGCCTAAGTCAACCCATGAAACGAGCGTG
1 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* *
17029731 CGGGCGCTCTA-CCGGCCAGAGGGGC-AGGATGCGTAAGCCGGGGATCGGTCGGGTTCCCC-CTA
66 CGGGCGCTC-AGCCGGCCAGAGGGGCGA-GATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTA
* * * *
17029793 TGTGCTACCAATCCTGCTA-CGCAACCCTT-AGTCTGGTCCGATCTTAGACTGGGAATGAACTCC
129 CGTGCTGCCGATCCTGCTACCGCAACCCTTGA-TCCGGTCCGATCTTAGACTGGGAATGAACTCC
* *
17029856 GTATGCCTAAGCCAACCAACGAAACAAGCGGGCGGGC-GGCGGGCACTAC-TCCGGCCAGAGAGA
193 GTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGT-CGGCCAGAGAGA
* * *
17029919 CGGGATGCCCAAGCCATGGATCGAT-GTGGTGGTAGGTGGGTTTAGGGACATCTTCATATTTCTA
257 CGGGATGCGCAAGCCGTGGATCGATAG-GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA
* ** * *
17029983 TGTGTGAATGCCATTTTTTATGCCTTGTAAATTCATACAATGGTCCCTTAAGCCTT-GCGTGAAG
321 CGTGCCAATGCCA-TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* * * ** * *
17030047 TTTCATGGCAAGACGACTCATTTTTTATTTTTAACGATTTTCAAAACTTTTTGCGATTTGGGATT
385 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATT
* * ** ** *
17030112 TTTTAAAAGTTTTTCGAAAAAAGTTTTGGCCCCAAACTTATTAGACGTGA-CCTTGTATTCTTGT
450 TTTT-AAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* * * * *
17030176 TGACATGCATAAAAAAATTCAACTAAAAAATTGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
514 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
17030241 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
579 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
** * *
17030306 TAAGGGGGTGTGAGTTCTTAAGGTTGGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACAAG
644 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * *
17030371 CACCCATCGCACATCATGTGCACACACCCCCCCGACCCCCCCGATCATCGGAACCCCAATGCCGT
709 CACCCATCGCACATCATGTGCGCACA-CCCCCCG-GCCCCCCGATCGTCGGAACCCCAATGCCGT
* *
17030436 CGGTCAGGTTCTTCGATGAAGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGTAC
772 CGGTCAGG----T---T---GCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCAC
* * * ** * * * *
17030501 ATGCCCAAGCCCAG-ATGTGCCGTCGCAACCCTTTAGTCCGGTCTGATCCTAGACTGGGAAT
827 ATGCCCGAGCCCAGCATGTGCTGCCGCAA-CCTTCGGTTCGATCCGATCTTAGACTGGGAAT
** * * * *
17030562 GAACTTTGTATGCTTAGACTGGGAATGAACTCCGTATGCCT-AGTTAACGCACAAAACAAGCGTG
1 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* * * * *
17030626 CGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGAGTCCCCCTCTACA
66 CGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACG
** * ** * * * * * *
17030691 TGCTATCGATCTTGCCGCCACAACCTTTGGTCCGGTCGGATCTTAGAGTGGGAATGAACTCCATA
131 TGCTGCCGATCCTGCTACCGCAACCCTTGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
* *
17030756 AGCCTAAGCCAACCGACG-AACGAGCGGCTGGGCGGGCGAGCGGGCAAGCACTACGTCGGCCAGA
196 TGCCTAAGCCAACCGACGAAACGA---GC-GGGCGGGCGGGC-GG---GCACTACGTCGGCCAGA
* * * * * *
17030820 GAGATGGGATGCGTAAGCTGTGTATCGATAGGGTGGTAGGT-GGTTTTGGAACATCTTCATATTT
253 GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
* *
17030884 CTGCGTGCCAATGCCA-TTTTATGGCTTGTAAATTCATACAATGGT-CCTTAACCCTTCACGTGA
318 CTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
* *
17030947 AGTTTCGTGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAACTTTTTGC--TATCGG
383 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG-AAACTTTTTGCGGT-TC-G
* * * * *
17031010 GGATTTTTCAAATTTTGTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTT
445 GGATTTTTTAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
*
17031075 TTTTTGGCATGCACAAAAAAATTCATG-TAAAAAACTCGAAGTGTACAAGATTTTGTGA-C----
510 TTGTTGGCATGCACAAAAAAATTCA-GCT-AAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
* *
17031134 ------A--------ATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTATAAAATCTCAAAT
573 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* * *
17031185 GCTCTTTCAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGCCCAAG
638 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* * * ** *
17031250 TAACAGAACCCATCGCACATCATGTGCGCACACCCCCCAGTCCCGTCGATCGCCGGAA-CCCAAT
703 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GGCCCCCCGATCGTCGGAACCCCAAT
* *
17031314 GCCG-CGGTCAGGTTCTCTGACGTTGCTTCGACGATGGTACCCCGGTGAAGAAAAATGTGGCACC
767 GCCGTCGGTCAGG---T-TG-C--T-C--CGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACC
* * * * *
17031378 AGCACATGCCCAAGCCCAGCATGTGCTGTCGCAACCCTCGG-TCTGGTCTGATCTTAGACTGGGA
822 AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCTTCGGTTC-GATCCGATCTTAGACTGGGA
17031442 AT
886 AT
* *
17031444 GAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTG
1 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
** * * * * * *
17031509 CGGGCGCTCAGTTGGCTAGAGGGGCCAGATGCACAAGCCGGGGATCAGTTGGGTCCCCCTCTATG
66 CGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACG
** * * ** * *
17031574 TGCTATCAATCCTGCTGCCATAACCCTCGATCCGGTCTC-ATCTTAGACTAGGAATGAACTCCGT
131 TGCTGCCGATCCTGCTACCGCAACCCTTGATCCGGTC-CGATCTTAGACTGGGAATGAACTCCGT
* * * *
17031638 ATGCCTAAGCCAACCAATGAAACAAGCAGGCGGGCGGGCGGGTGGGCACTATGTCGGCCAGAGAG
195 ATGCCTAAGCCAACCGACGAAAC--G-A-GCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAG
* *
17031703 ACGGGATGTGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG
256 ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-
* *
17031768 A-ATGCCAATGCCATTTTTATGGCTTGTAAATTCGTACAATGGTCCCTTAAGCCTTCACGTGAAG
320 ACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* * *
17031832 TTTCATGGCAAGACGACTCGTTTTCAATTTTTCATGATTTTTGAAACTTTTTTGCAGTTCGGGAT
385 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC-TTTTTGCGGTTCGGGAT
* * *** *
17031897 TTTTTAAATTTTTTCGGAAGGAGTTTTTTTCCCAAACTTGGTAGACGTGATCCTTTTATTTTT-T
449 TTTTTAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
*
17031961 TGG-ATGCAC-AAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAA
514 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
*
17032024 AGTGCCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
579 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* * * *
17032089 TAAGAGGGTGTGAGTTCTTGAGGCTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGGACCAG
644 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * * * *
17032154 CAGCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCTGATCGCCGAAACCCTAATGCCGCC
709 CACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCC-GATCGTCGGAACCCCAATGCCGTC
* * ** * *
17032219 GGTCATGTTCTCCGGCGATGCTCCGACGATGGTGCCCTGACGAAGAAAAATACGACACCAGCACA
773 GGTCA---------G-GTTGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACA
* * * * * *
17032284 TGCTCGAGCCCAGCATGTGCTGCCGTAACCCTCCG-TCTAGTCCGGTCTTAGACTGGGAAT
828 TGCCCGAGCCCAGCATGTGCTGCCGCAACCTTCGGTTCGA-TCCGATCTTAGACTGGGAAT
* * *
17032344 GAACCCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTGAACCCACGAAACGAACGTG
1 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* * * *
17032409 CGGGCACTCAGCCGGCTAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACA
66 CGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACG
* * *** * * *
17032474 TGCTGTCGATCCTGCTACCGCAACCCTCGATGTAGTCTGATCTTAGACTAGGAATGAACTCCATA
131 TGCTGCCGATCCTGCTACCGCAACCCTTGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
** * * *
17032539 TATCTAAGCC-A---AC----CGA-CGGGCGGGTGGGCGGACACTACG-CGGGCTAGAGAGACGG
196 TGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTC-GGCCAGAGAGACGG
* * *
17032594 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGCATG
260 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTG
*
17032659 CCAATGCCATTTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACGTGAAGTTTCA
325 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * * *
17032724 TGGCAAGACGACTCGTTTTCTATTTTTCTCGATTTTTAAAACTTTTTGTGGTTCAGGATTTTTTA
390 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTA
* * * ** * *
17032789 AATTTTTTCGGAAGAAGTTTTTACCCCAAACCTGGTAGACATGATCCTTGTATTTTTGTTGGCAG
455 AATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA-
* *
17032854 TGCACAAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCGTTTGAAAAAA---
519 TGCAC-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* * * * * *
17032916 --CCAATTCCAGACACTTTAATAGCTAATGGCAGCAAACCTGTAAAATCTTAAAGGCTCTTTAAG
583 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
*
17032979 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGGCCAATATAAGTGCCAAGTACCAGCAC
648 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT-AGGGGGCCAATATAAGGGCCAAGTACCAGCAC
** * * * *
17033044 CCATCATACATCATGTGTGCACACCCCCCCGAGCCCCCCGATTGCCGGAA-CCCAATGCCGCCGG
712 CCATCGCACATCATGTGCGCACA-CCCCCCG-GCCCCCCGATCGTCGGAACCCCAATGCCGTCGG
* *
17033108 TCAGGTT-CTCCGGTGATGCTCCGGTGATGATGCCCCGGCGAAGAAAAATGCGGCACCAGCACAT
775 TCAGGTTGCTCC---GA-----C---GATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACAT
* * * * *
17033172 GCCCGAGCCCAGCATGTGCTACTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAAT
829 GCCCGAGCCCAGCATGTGCTGCCGCAACCTTCGGTTCGATCCGATCTTAGACTGGGAAT
** *
17033231 GAACTTTGTATGGCTTAGACTGGGAATAGAACTCCGTATGCCT-AGTCAATCCACGAAACGAGCG
1 GAACTCCGTAT-GCTTAGACTGGGAAT-GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
** * * * * *
17033295 TGCGGGCGCTCAGTAGGCCAGACGGGGCGGGATGTGCAAGCCGTGGATCGATCGGGT-CCCCTCC
64 TGCGGGCGCTCAGCCGGCCAGA-GGGGCGAGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCT
* * * * * *
17033359 ATGTGCTGCTGATCCT-CTACCACAA-CCTTCGGTCTGGTCTGATCTTTAGACTGGGAAATGAAC
128 ACGTGCTGCCGATCCTGCTACCGCAACCCTT-GATCCGGTCCGATC-TTAGACTGGG-AATGAAC
*
17033422 TCCGTATGCCTAAGCCAA-CGACGAAACGAGCGGACGGGCCGGGGAGCGGGCACTACG-CTGGCC
190 TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG-C--GG-GCGGGCACTACGTC-GGCC
** *
17033485 AGAGAGACGGGATGCGCAAATCGTGGATCGATACGGTGGTAGGTGGGTTTTAGGCACATCTTCAT
250 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG-TTTAGGCACATCTTCAT
* * * *
17033550 ATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAACTCATACAATGGTCTCTTAAGCCTTCAC
314 ATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* * * *
17033615 GTCAAGTTTCATGGCAAGACGACTCATTTTTTTATTTTTCACAATTTTTGAAACTTTTTGCGGGT
379 GTGAAGTTTCATGGCAAGACGACTC-GTTTTCTATTTTTCACGATTTTTGAAACTTTTTGC-GGT
* * ** *
17033680 TCGAGATTTTTTAAAATTTTTTTCG-AAGGATTTTTGGCCCCAAACTCAGTAGACATGATCCTTG
442 TCGGGATTTTTT-AAATTTTTTT-GAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
** * * *
17033744 TATTTTACTTGACATGCAC-AAACAA-TCAGCT-AAAACTTGAAAGTGTACAAGATTTTGGTGAA
505 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG-AAGTGTACAAGATTTT-GTG-A
*
17033806 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATC
567 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT-
* **
17033871 CTCAAATGCTATTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATACAGGGCCAATATAAA
631 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT-AA
* * * *
17033936 GGGCCAATTAACCGAGAAAACCCCCAAT--CACCTCATGAGCGCACACCCCCCATGGCCCCCCGA
695 GGGCCAAGT-ACC-AG----CACCC-ATCGCACATCATGTGCGCACACCCCCC--GGCCCCCCGA
* * *
17033999 TCGTCGGAACCCCAATACCGCGGTCAGCGTTTCTCCGGTGATGCTCCGCACGATGGTGCCTCCGA
751 TCGTCGGAACCCCAAT---GCCGTC-G-G----TCAGGT--TGCTCCG-ACGATGGTGCC-CCGG
* * * * * *
17034064 TGAAAGTAAACAATAACGGCAACCAACACATGCCCGAGTCCAGCAAGTGCTGCTGCAACCCTCGG
803 TG-AAG-AAA-AAT-GCGGC-ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCTTCGG
* * *
17034129 TCCGGTCCGATCTTAGATTGGGAAT
863 TTCGATCCGATCTTAGACTGGGAAT
*
17034154 GAACTGCGTATGC
1 GAACTCCGTATGC
17034167 CTAAACCGAT
Statistics
Matches: 9170, Mismatches: 1135, Indels: 784
0.83 0.10 0.07
Matches are distributed among these distances:
841 30 0.00
842 4 0.00
843 217 0.02
844 164 0.02
845 1 0.00
847 4 0.00
848 176 0.02
849 3 0.00
850 5 0.00
851 1 0.00
852 29 0.00
853 53 0.01
854 1 0.00
856 4 0.00
858 2 0.00
861 1 0.00
862 2 0.00
863 96 0.01
864 67 0.01
865 48 0.01
866 88 0.01
867 8 0.00
868 1 0.00
869 2 0.00
870 184 0.02
871 453 0.05
872 226 0.02
873 24 0.00
874 112 0.01
875 3 0.00
876 7 0.00
877 7 0.00
878 3 0.00
879 37 0.00
880 67 0.01
881 43 0.00
882 159 0.02
883 297 0.03
884 37 0.00
885 367 0.04
886 421 0.05
887 560 0.06
888 353 0.04
889 616 0.07
890 113 0.01
891 55 0.01
892 11 0.00
893 119 0.01
894 98 0.01
895 312 0.03
896 487 0.05
897 202 0.02
898 162 0.02
899 16 0.00
900 362 0.04
901 186 0.02
902 229 0.02
903 98 0.01
904 80 0.01
905 101 0.01
906 20 0.00
908 54 0.01
909 56 0.01
910 210 0.02
911 51 0.01
912 51 0.01
913 247 0.03
914 105 0.01
915 149 0.02
916 7 0.00
917 10 0.00
918 10 0.00
919 4 0.00
920 6 0.00
921 12 0.00
922 9 0.00
923 83 0.01
924 218 0.02
925 45 0.00
926 205 0.02
927 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (887 bp):
GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
CGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACG
TGCTGCCGATCCTGCTACCGCAACCCTTGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
TGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGG
ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGC
CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAA
ATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
CGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGT
TGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
GCTGCCGCAACCTTCGGTTCGATCCGATCTTAGACTGGGAAT
Found at i:17029688 original size:26 final size:26
Alignment explanation
Indices: 17029652--17029704 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17029642 TTGATCCGAT
17029652 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17029678 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
17029704 C
1 C
17029705 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17030598 original size:26 final size:26
Alignment explanation
Indices: 17030550--17030600 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17030540 GGTCTGATCC
**
17030550 TAGACTGGGAATGAACTTTGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
17030576 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
17030601 CTAGTTAACG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:17031466 original size:26 final size:26
Alignment explanation
Indices: 17031430--17031482 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17031420 CTGGTCTGAT
17031430 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17031456 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17031482 C
1 C
17031483 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17032366 original size:26 final size:26
Alignment explanation
Indices: 17032330--17032382 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17032320 CTAGTCCGGT
17032330 CTTAGACTGGGAATGAACCCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
*
17032356 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
17032382 C
1 C
17032383 CTAAGTGAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCGTATG
Found at i:17032468 original size:900 final size:898
Alignment explanation
Indices: 17027912--17034166 Score: 7266
Period size: 896 Copynumber: 7.0 Consensus size: 898
17027902 CTGGTCCGAT
* * * *
17027912 CTTAGAATGGGAATGAACT-TGATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAG
1 CTTAGACTGGGAATGAACTCCG-TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** * * * ** * *
17027976 CCGG-TCAGAGGGGTAGGATGTGCAAGTCGTGGATCGGTTTGGTCCCCCTCTGCGTGCTGCCGAT
65 CCGGCT-AGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGAT
* * * * * *
17028040 CCTGCTACCGCAACCCTTGGT-CTGACCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGC
129 CCTGCTACCACAACCCTCGGTCCGGTCTC-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
** *
17028104 CAACCAGA-GAAACGAGCGGTCGGGTAGGTGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGC
193 CAACCA-ACGAAACGAGCGG-CGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGC
*
17028168 GCAAGCCGTGGATCGATATGGTGGTAGGTGGGTTTAGGCACATCTTC--A----T--A-GCCAAT
256 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGAATGCCAAT
* *
17028224 GCCATTTTTATGCCTTGTAAATTCATACAATGGTCCCTTAAGCCTTGACGTGAAGTTTCATGGCA
321 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * * * * *
17028289 AGACGACTCATTTTCTATTTTTAAGGATTTTCAAAACTTTTTGATGTTTGGGATTTTTTAAAATT
386 AGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTG-CGTTCGGGATTTTTT-AAATT
* * *
17028354 TTTTTGGAAGGAGTTTTGGCCCCAAACTTGTTAGACGTGGTCCTTGTATTCTTGTTGGCATGCAC
449 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT-TTGTTGGCATGCAC
*
17028419 AAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
513 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
17028484 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
578 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* *
17028549 TGAGTTCTCAAGGTTGGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGC
643 TGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
*
17028614 ACATCATGTGCGCACACCCCCC-GCCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTTC
708 ACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGG-TTC
* * * *
17028678 TCCGACGATGCTCCGACGATGGTGCCCC-GCGAAGAAAATTACAGCACCAGCACATGCTCGAGCC
772 TCCGACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCC
* *
17028742 CAGCATGTGCTGCCGCAA--CAC--T-C-G---G---TT----T--G---G---TCC-AAT-
837 CAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
** * * * *
17028778 CTTAGACAAGGAATGAACTCCTTATGCCTAAGTCAATCCACG-AACGAGAGTGCGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * * * * * ** *
17028842 CGACTAGAGGGGCGAAATCCGTAAGCCAGGGATCGGCCGAGT-CCCCTCCGCGTGCTGCCGATCC
66 CGGCTAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCC
** * * * **
17028906 TGCTGTCGCAACCCTCGGTCCGGTCTAATCTTAGATTGGGAATGAACTCTATATG-CTAAGCCAA
131 TGCTACCACAACCCTCGGTCCGGTCTCATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * * *
17028970 CCGACGAAACGAACGGGCGGGTGGGTGGGCGAGCACTACGCCGGACAAAGAGACGGGATGCGCAA
196 CCAACGAAACGAGC-GGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* *
17029035 GCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-ACGTGCCAATGCC
260 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGA-ATGCCAATGCC
*
17029099 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTGACGTGAAGTTTCATGGCAAGA
324 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * *
17029164 CGAATCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTT
389 CGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGC-GTTCGGGATTTTTTAAATTTTTT
* * * ** ** * *
17029229 CGAAAGGTA-CTTTGGCCCCAAACATATTAGTTGTGATCCCTGTATTCTTGTTGGCATGGACAAA
453 CGGAAGG-AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT-TTGTTGGCATGCACAAA
* * *
17029293 AAAATTCTGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAATTGTCCCCATTT
516 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
17029358 TAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
581 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* ** * * *
17029423 GTTATCAAGGTTTGATGAGGGATA-GCAGCTAATATAAGGGCCAAGTAACAGCACCCATCCCACA
646 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * *
17029487 TCATGTGTGCACACCACCCCTGGCACCCCCGATCGTCGGAACCCCAATGTCGCCAGTCAGGTTCT
711 TCATGTGCGCACACC-CCCC-GGC-CCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCT
*
17029552 CCGACGATGCTCCAACGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCC
773 CCGACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCC
* * * ** * *
17029617 AGCATGTGCTACCGCAAACCTTGGTTTGATCCGATCTTAGACTGGGAATGAACTCCATATG
838 AGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
17029678 CTTAGACTGGGAATGAACTTCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCTA-
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC-AG
* * * * * *
17029742 CCGGCCAGAGGGGCAGGATGCGTAAGCCGGGGATCGGTCGGGTTCCCC-CTATGTGCTACCAATC
65 CCGGCTAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATC
* ** *
17029806 CTGCTA-CGCAACCCTTAGTCTGGTC-CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
130 CTGCTACCACAACCCTCGGTCCGGTCTC-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* *
17029869 AACCAACGAAAC-A--AGCGGGCGGGC-GGCGGGCACTAC-TCCGGCCAGAGAGACGGGATGCCC
194 AACCAACGAAACGAGCGGCGGGCGGGCGGGCGGGCACTACGT-CGGCCAGAGAGACGGGATGCGC
* * * **
17029929 AAGCCATGGATCGAT-GTGGTGGTAGGTGGGTTTAGGGACATCTTCATATTTCT-ATGTGTGAAT
258 AAGCCGTGGATCGATAG-GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGA-ATGCCAAT
* *
17029992 GCCATTTTTTATGCCTTGTAAATTCATACAATGGTCCCTTAAGCCTT-GCGTGAAGTTTCATGGC
321 GCCA-TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * * * * *
17030056 AAGACGACTCATTTTTTATTTTTAACGATTTTCAAAACTTTTTGCGATTTGGGATTTTTTAAAAG
385 AAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCG-TTCGGGATTTTTT-AAAT
* ** ** *
17030121 TTTTTCGAAAAAAGTTTTGGCCCCAAACTTATTAGACGTGA-CCTTGTATTCTTGTTGACATGCA
448 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT-TTGTTGGCATGCA
* * * *
17030185 TAAAAAAATTCAACTAAAAAATTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
512 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
17030250 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
577 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* * *
17030315 GTGAGTTCTTAAGGTTGGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACAAGCACCCATCG
642 GTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * ** *
17030380 CACATCATGTGCACACACCCCCCCGACCCCCCCGATCATCGGAACCCCAATGCCGTCGGTCAGGT
707 CACATCATGTGCGCACA-CCCCCCG-GCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGT
* * * * * * *
17030445 TCTTCGATGAAGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGTACATGCCCAAG
770 TCTCCGACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCGAG
* * ** * * **
17030510 CCCAG-ATGTGCCGTCGCAACCCTTTAGTCCGGTCTGATCCTAGACTGGGAATGAACTTTGTATG
835 CCCAGCATGTGCTGCCGCAACCC-TCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
17030574 CTTAGACTGGGAATGAACTCCGTATGCCT-AGTTAACGCACAAAACAAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
17030638 CGACCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGAGTCCCCCTCTACATGCTATCGATCT
66 CGGCTAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCC
** * * ** * * *
17030703 TGCCGCCACAACCTTTGGTCCGGTCGGATCTTAGAGTGGGAATGAACTCCATAAGCCTAAGCCAA
131 TGCTACCACAACCCTCGGTCCGGTCTCATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
17030768 CCGACG-AACGAGCGGCTGGGCGGGCGAGCGGGCAAGCACTACGTCGGCCAGAGAGATGGGATGC
196 CCAACGAAACGAGCGGC-GGGCGGGCGGGC-GG---GCACTACGTCGGCCAGAGAGACGGGATGC
* * * * * **
17030832 GTAAGCTGTGTATCGATAGGGTGGTAGGT-GGTTTTGGAACATCTTCATATTTCTGCGTGCCAAT
256 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGAATGCCAAT
* *
17030896 GCCA-TTTTATGGCTTGTAAATTCATACAATGGT-CCTTAACCCTTCACGTGAAGTTTCGTGGCA
321 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* *
17030959 AGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAACTTTTTGC-TATCGGGGATTTTTCAAAT
386 AGACGACTCGTTTTCTATTTTTCACGATTTTT-AAAACTTTTTGCGT-TC-GGGATTTTTTAAAT
* * *
17031023 TTTGTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCA
448 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTGTTGGCATGCA
17031088 CAAAAAAATTCATG-TAAAAAACTCGAAGTGTACAAGATTTTGTGA-C----------A------
512 CAAAAAAATTCA-GCT-AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* * *
17031135 --ATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTCAGGGG
575 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* * *
17031198 GTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGCCCAAGTAACAGAACCCAT
640 GTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* **
17031263 CGCACATCATGTGCGCACACCCCCCAGTCCCGTCGATCGCCGGAA-CCCAATGCCG-CGGTCAGG
705 CGCACATCATGTGCGCACACCCCCC-GGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGG
* * * * ** *
17031326 TTCTCTGACGTTGCTTCGACGATGGTACCCCGGTGAAGAAAAATGTGGCACCAGCACATGCCCAA
769 TTCTCCGACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCGA
* * * *
17031391 GCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATG
834 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
17031456 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * * * * * *
17031521 TGGCTAGAGGGGCCAGATGCACAAGCCGGGGATCAGTTGGGTCCCCCTCTATGTGCTATCAATCC
66 CGGCTAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCC
* * * *
17031586 TGCTGCCATAACCCTCGATCCGGTCTCATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTACCACAACCCTCGGTCCGGTCTCATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
17031651 CCAATGAAACAAGCAGGCGGGCGGGCGGGTGGGCACTATGTCGGCCAGAGAGACGGGATGTGCAA
196 CCAACGAAACGAGC-GGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
*
17031716 GCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGAATGCCAATGCCA
260 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGAATGCCAATGCCA
*
17031781 TTTTTATGGCTTGTAAATTCGTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
325 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
17031846 GACTCGTTTTCAATTTTTCATGATTTTTGAAACTTTTTTGCAGTTCGGGATTTTTTAAATTTTTT
390 GACTCGTTTTCTATTTTTCACGATTTTTAAAAC-TTTTTGC-GTTCGGGATTTTTTAAATTTTTT
*** * *
17031911 CGGAAGGAGTTTTTTTCCCAAACTTGGTAGACGTGATCCTTTTATTTTTTTGG-ATGCAC-AAAA
453 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTGTTGGCATGCACAAAAA
* *
17031974 AATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGCCCCCATTTCA
518 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
17032039 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGT
583 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
** * * *
17032104 TCTTGAGGCTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGGACCAGCAGCCATCGCACATC
648 TCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * *
17032169 ATGTGCGCACACCCCCCGGCCCCCCTGATCGCCGAAACCCTAATGCCGCCGGTCATGTTCTCCGG
713 ATGTGCGCACACCCCCCGGCCCCCC-GATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA
* ** * *
17032234 CGATGCTCCGACGATGGTGCCCTGACGAAGAAAAATACGACACCAGCACATGCTCGAGCCCAGCA
777 CGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCA
* * ** * *
17032299 TGTGCTGCCGTAACCCTCCGTCTAGTCCGGTCTTAGACTGGGAATGAACCCCGTATG
842 TGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
17032356 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTGAACCCACGAAACGAACGTGCGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* **
17032421 CGGCTAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACATGCTGTCGATCC
66 CGGCTAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCC
* * *** * * * **
17032486 TGCTACCGCAACCCTCGATGTAGTCTGATCTTAGACTAGGAATGAACTCCATATATCTAAG----
131 TGCTACCACAACCCTCGGTCCGGTCTCATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
17032547 CCAAC----CGA----CGGGCGGGTGGGCGGACACTACG-CGGGCTAGAGAGACGGGATGCGCAA
196 CCAACGAAACGAGCGGCGGGCGGGCGGGCGGGCACTACGTC-GGCCAGAGAGACGGGATGCGCAA
* *
17032603 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGCATGCCAATGCCA
260 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGAATGCCAATGCCA
*
17032668 TTTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
325 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
17032733 GACTCGTTTTCTATTTTTCTCGATTTTTAAAACTTTTTGTGGTTCAGGATTTTTTAAATTTTTTC
390 GACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTG-CGTTCGGGATTTTTTAAATTTTTTC
* ** * *
17032798 GGAAGAAGTTTTTACCCCAAACCTGGTAGACATGATCCTTGTATTTTTGTTGGCAGTGCACAAAA
454 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTGTTGGCA-TGCAC-AAA
* * * *
17032863 AAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCGTTTGAAAAAA-----CCAATTC
516 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * *
17032923 CAGACACTTTAATAGCTAATGGCAGCAAACCTGTAAAATCTTAAAGGCTCTTTAAGGGGGTGTGA
581 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * **
17032988 GTTCTCGAGGTTTGATGAGGGATAAGGGGGCCAATATAAGTGCCAAGTACCAGCACCCATCATAC
646 GTTCTCAAGGTTTGATGAGGGAT-AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* *
17033053 ATCATGTGTGCACACCCCCCCGAGCCCCCCGATTGCCGGAA-CCCAATGCCGCCGGTCAGGTTCT
710 ATCATGTGCGCACA-CCCCCCG-GCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCT
** ** * * *
17033117 CCGGTGATGCTCCGGTGATGATGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
773 CCGACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCC
* * **
17033182 AGCATGTGCTACTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTTGTATGG
838 AGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT-G
*
17033244 CTTAGACTGGGAATAGAACTCCGTATGCCT-AGTCAATCCACGAAACGAGCGTGCGGGCGCTCAG
1 CTTAGACTGGGAAT-GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** * * * * * * * *
17033308 TAGGCCAGACGGGGCGGGATGTGCAAGCCGTGGATCGATCGGGT-CCCCTCCATGTGCTGCTGAT
65 CCGGCTAGA-GGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGAT
* * *
17033372 CCT-CTACCACAACCTTCGGTCTGGTCTGATCTTTAGACTGGGAAATGAACTCCGTATGCCTAAG
129 CCTGCTACCACAACCCTCGGTCCGGTCTCATC-TTAGACTGGG-AATGAACTCCGTATGCCTAAG
* *
17033436 CCAA-CGACGAAACGAGCGGACGGGCCGGG-GAGCGGGCACTACG-CTGGCCAGAGAGACGGGAT
192 CCAACCAACGAAACGAGCGG-CGGG-CGGGCGGGCGGGCACTACGTC-GGCCAGAGAGACGGGAT
** * *
17033498 GCGCAAATCGTGGATCGATACGGTGGTAGGTGGGTTTTAGGCACATCTTCATATTTCTGCATGCC
254 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG-TTTAGGCACATCTTCATATTTCTGAATGCC
* * *
17033563 AATGCCATTTTTATGGCTTGTAAACTCATACAATGGTCTCTTAAGCCTTCACGTCAAGTTTCATG
318 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * * * *
17033628 GCAAGACGACTCATTTTTTTATTTTTCACAATTTTTGAAACTTTTTGCGGGTTCGAGATTTTTTA
383 GCAAGACGACTC-GTTTTCTATTTTTCACGATTTTTAAAACTTTTTGC--GTTCGGGATTTTTT-
* ** * * *
17033693 AAATTTTTTTC-GAAGGATTTTTGGCCCCAAACTCAGTAGACATGATCCTTGTATTTTACTTGAC
444 AAA-TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT-GTTGGC
* *
17033757 ATGCAC-AAACAA-TCAGCT-AAAACTTGAAAGTGTACAAGATTTTGGTGAACCATTTGAAAAAA
507 ATGCACAAAAAAATTCAGCTAAAAACTCG-AAGTGTACAAGATTTT-GTG-ACCATTTGAAAAAA
* *
17033819 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCCTCAAATGCTATT
569 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT-CTCAAATGCTCTT
* ** *
17033884 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATACAGGGCCAATATAAAGGGCCAATTAACC
633 TAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATAT-AAGGGCCAAGT-ACC
* * * *
17033949 GAGAAAACCCCCAAT--CACCTCATGAGCGCACACCCCCCATGGCCCCCCGATCGTCGGAACCCC
696 -AG----CACCC-ATCGCACATCATGTGCGCACACCCCCC--GGCCCCCCGATCGCCGGAACCCC
* ** *
17034012 AATACCG-CGGTCAGCGTTTCTCCGGTGATGCTCCGCACGATGGTGCCTCCGATGAAAGTAAACA
753 AATGCCGCCGGTCAG-G-TTCTCCGACGATGCTCCG-ACGATGGTGCC-CCGGTG-AAG-AAA-A
* * * *
17034076 ATAACGGCAACCAACACATGCCCGAGTCCAGCAAGTGCTGCTGCAACCCTCGGTCCGGTCCGATC
811 AT-ACGGC-ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATC
* *
17034141 TTAGATTGGGAATGAACTGCGTATG
874 TTAGACTGGGAATGAACTCCGTATG
17034166 C
1 C
17034167 CTAAACCGAT
Statistics
Matches: 4618, Mismatches: 586, Indels: 314
0.84 0.11 0.06
Matches are distributed among these distances:
862 1 0.00
863 103 0.02
864 63 0.01
865 48 0.01
866 35 0.01
869 1 0.00
870 48 0.01
871 210 0.05
872 121 0.03
873 32 0.01
874 81 0.02
876 1 0.00
878 1 0.00
879 29 0.01
880 65 0.01
881 41 0.01
882 173 0.04
883 289 0.06
884 37 0.01
885 142 0.03
886 155 0.03
887 401 0.09
888 95 0.02
889 76 0.02
890 2 0.00
891 52 0.01
892 6 0.00
893 1 0.00
894 1 0.00
895 85 0.02
896 503 0.11
897 196 0.04
898 156 0.03
899 13 0.00
900 374 0.08
901 185 0.04
902 230 0.05
903 94 0.02
904 83 0.02
905 91 0.02
906 9 0.00
908 52 0.01
909 55 0.01
910 3 0.00
911 2 0.00
913 6 0.00
914 36 0.01
915 15 0.00
916 20 0.00
917 8 0.00
918 4 0.00
919 3 0.00
920 3 0.00
921 3 0.00
922 6 0.00
923 73 0.02
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCTAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCC
TGCTACCACAACCCTCGGTCCGGTCTCATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCAACGAAACGAGCGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAG
CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGAATGCCAATGCCAT
TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
ACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGTTCGGGATTTTTTAAATTTTTTCGG
AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTGTTGGCATGCACAAAAAAAT
TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
CAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
TGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGAT
GCTCCGACGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTG
CTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:17034860 original size:26 final size:26
Alignment explanation
Indices: 17034785--17034860 Score: 125
Period size: 26 Copynumber: 2.9 Consensus size: 26
17034775 CCGGTCTGAT
**
17034785 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
17034811 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
17034837 CTTAGACTGGGAATGAACTCTGTA
1 CTTAGACTGGGAATGAACTCTGTA
17034861 CGTCTAAGTC
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:17036591 original size:26 final size:26
Alignment explanation
Indices: 17036555--17036613 Score: 95
Period size: 26 Copynumber: 2.3 Consensus size: 26
17036545 CTCCGTCTGG
17036555 TCCG-ATG-TTAGACTGGGAATGAAC
1 TCCGTATGCTTAGACTGGGAATGAAC
*
17036579 TCCGTATGCTTAGATTGGGAATGAAC
1 TCCGTATGCTTAGACTGGGAATGAAC
17036605 TCCGTATGC
1 TCCGTATGC
17036614 CTAAGTCAAC
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
24 4 0.12
25 3 0.09
26 25 0.78
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (26 bp):
TCCGTATGCTTAGACTGGGAATGAAC
Found at i:17037246 original size:888 final size:886
Alignment explanation
Indices: 17034811--17040194 Score: 6758
Period size: 888 Copynumber: 6.0 Consensus size: 886
17034801 ACTCCATATG
** * * *
17034811 CTTAGACTGGGAATGAACTTTGTATGCTTAGACTGGGAATGAACTCTGTACGTCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* *
17034876 ACGGAACGAGCGT-CGGGCAG-TC-ACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATC
66 ACGAAACGAGCGTGCGGGC-GCTCAACCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGATC
* * *
17034938 GGGTCCCCCTCTACATGCTGTCGATCCTGCTGCCGCAACCCTC-GATCCGGTCTGATCTTAGACT
130 GGGTCCCCCTCTGCTTGCTGCCGATCCTGCTGCCGCAACCCTCAG-TCCGGTCTGATCTTAGACT
* * *
17035002 AGGAGTGAACTCCGTATGCCTAAGCCAACCGACGAAACGA--------GCGGGCGGGCACTGCAC
194 AGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGC
* * * * *
17035059 CGGCCAGAGAGATGAGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTTGGTTTAGGCACATAT
259 CGGCCAAAGAGA-CAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
17035124 TCATATTTCT--GTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC-ATGGTCCCTTAAGCCT
323 TCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* *
17035186 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGC-
388 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACG
**
17035250 ATTTTGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT-GTAGACGTGATCCT
453 A-TTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
*
17035314 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGGTAAAAAAC-CGAAGTGTACAAGATTTTGTGA
517 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT-AAAAACTCGAAGTGTACAAGATTTTGTGA
* * *
17035378 CCATTTGAAAAAAATG-CCCCATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTGCAAAATC
581 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
*
17035442 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
646 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGG
* * *
17035507 GCCAAGTACCAGCACCAATCGTACATCATGTGCGCAAACCCCCCTGGCCCCCCGATCG-CTGGAA
711 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GGCCCCCCGATCGTC-GGAA
* * * * * * *
17035571 CCCCAATGCCGCCAGTCA-GTTCTCTGGCGATGGTGCGCCGGCGAAGAAAAAGGCAGCACCAGCA
774 CCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCA
* * *
17035635 CATTCTCGAGCCCAGCATGTGCTGCCAGAACCCTCGGTATGGTCCGAT
839 CATGCTCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCTGGTCCGAT
*
17035683 CTTTGACT-GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * ** * * *
17035747 ATGAAATGAACGTGCGGGCG-TCAGTCGGCCAGAGGGGC-GGATGCGCAAGCCGGGAATCG-GCT
66 ACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGATC-
* * * ** * * * * *
17035809 AGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCAGTTTGGTTTGACCTTAAATTG
130 GGGTCCCCCTCTGCTTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTA
* *
17035874 GGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGA----GCGTGCGGGCGGGCACTACG-C
195 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCC
* * *
17035934 GG-CAGAGAGACAGGATGCGCAAGCCGTGGATCGATTGGGTGGTCGGTGGGTTTAGGCACATCTT
260 GGCCAAAGAGACA-GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* *
17035998 CATATTTCTGCGTGCCAATGCCATGTTTATGGCTTGTAAATTCATACAATGGTCTCTTAAGCCTT
324 CATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * * *
17036063 CACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGG
389 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGA
* * * * *
17036128 TTCAAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGTCCCAAAATTGATAGACGTAATCCTTG
454 TTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
*
17036193 TATTTTTGTTGGCATGCACGAAAAACA-TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
519 TATTTTTGTTGGCATGCAC-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
*
17036257 ATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
583 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* *
17036322 AAATGCTTTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGC
648 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGC
*
17036387 CAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCGACCCCCCCGATCGTCGGAACCC
713 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG-GCCCCCCGATCGTCGGAACCC
* * * * *
17036451 CAATACCGCCAGTCAGGTTTTCCGACGATGGTGCCCCGAG-AAAGAAATATGCGGCACCAGCACA
777 CAATGCCGCCGGTCAGGTTCTCCGACGATGGTGCCCCG-GTGAAGAAAAATGCGGCACCAGCACA
* * *
17036515 AGCTCGAGCCCAGCATGTGCTGTCACAACCCTCCGTCTGGTCCGAT
841 TGCTCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCTGGTCCGAT
* *
17036561 GTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * *
17036626 ACGAAACGAGCGTGCAGGCGCTCAACCGGCCAGAGAGGCGAGATGCACAAGCCGAGGATCGA-CT
66 ACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGATC-
* * ** * * *
17036690 GGGTCCCCCTCTGCTTGCTGCCAATCCTGCTGCCACAACCCTTGGTCCGATCTAATCTTAGACTG
130 GGGTCCCCCTCTGCTTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTA
* * *
17036755 GGAATGAACTCCATATGGCTAAGCCAACTGACGAAACGAGCGGGCGGGCGGGCGGGTGGCACTAC
195 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC--G-GGCACTAC
*
17036820 GCCGGCCAAAGAGACAGATGCGCAAGCCGTGGATCGATAGTGTGGTAGGTGGGTTTAGGCACATC
257 GCCGGCCAAAGAGACAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
*
17036885 ATCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
322 TTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * *
17036950 TTCACCTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAC
387 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTAC
* * *
17037015 GATTCAAGATTTTTT-AAATTTTTTGGGTATGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
452 GATTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* *
17037079 TGTATTTTTGTTGGAATGGACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
517 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
*
17037144 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCT
582 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
*
17037209 CAAATGCTCTTTAAGGTGGTGTGAGTTCTCGAGGTTTGATGAGGGAT-AGGGGTCCAATATAAGG
647 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGG-CCAATATAAGG
* *
17037273 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCA-ACCCCCCTGCCCCCCGATCGTTGGAACC
711 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACC
* *
17037337 CCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCGGGCGATGGTTCCCCAGTGAAGAAAAATGTG
776 CCAATGCCGCCGGTCAGGTTCTCCGACGA---T---G-G-T-G--CCCCGGTGAAGAAAAATGCG
* * * * * *
17037402 CCACCAGCACATGCCCGAGCCCAGCATGTGCTACCAAAACCGTCGGTCTCGTCCGAT
830 GCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCTGGTCCGAT
* *
17037459 CTTAGACTGGGAATGAACTCCATATGCTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * ** * * *** *
17037524 ACGAAAC-AGCGTACGAGCGCTCAGGCGGCCAGAGGTGCAGGAT-CACAAATTGGGGATCAATC-
66 ACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGATCG
* * * * *
17037586 GGTCCCACCTCTACGTGCTGTCGATCCTACTGTCGCAACCCTCAGTCCGGTCTGATCTTAGACTA
131 GGTCCC-CCTCTGCTTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTA
* *
17037651 GGAATGAACTCCGTATGCCTAAG-CAACCGACGAAACGAGCGTGCGGGCGGGCGGGCACTTCGCC
195 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCC
*
17037715 GG-CAGAGACG-CAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
260 GGCCAAAGA-GACA-GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
*
17037778 TCATATTTTCTGCAGTCGCCAATGCCATGTTTATGGCTTGTAAATTCATAC-ATGGTCCCTTAAG
323 TCATA-TTTCTGC-GT-GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
17037842 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA-TTTTCATGATTTTTAAAACTTTTT
385 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTT
* * * * *
17037906 ACGGTTCAGGATTTTTTAAAAATGTTTTTCGAAAGGAGTTTTTGGTCCCAAACTTGGTCGACGTG
450 ACGATTCAAGATTTTTT-AAAAT-TTTTTCGGAAGGAG-TTTTGGCCCCAAACTTGGTAGACGTG
* *
17037971 ATCCTTGAATTTTTGTTGGCATGCAACGAAAAACA-TCAGCTAAAAACTCGAAGTGTACAAGATT
512 ATCCTTGTATTTTTGTTGGCATGC-AC-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* * * * *
17038035 TTTTGGCCATTTGGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTA
575 TTGTGACCATTT-GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
*
17038100 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
639 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAA
* * *
17038165 TATAAGGGCCAAGAACCAGCACCCATCACACATCATGTGCGCACA-CCCCCGGCCCCCCGATCAT
704 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGT
* * *
17038229 C-GAACCCTAATACCGCC-GTCAGGTTCTCCGGTGATGCTCCAGCGATGGTGCCCAGG-GAAGAA
769 CGGAACCCCAATGCCGCCGGTCAGGTTCTCC------G----A-CGATGGTGCCCCGGTGAAGAA
* ** * *
17038291 ATATGCGGCACCAGCACATGCTCGAGCGTAGCATGTGCTGCCGCATCCCTCGGTCTGGTCC-AT
823 AAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCTGGTCCGAT
* *
17038354 CTTAGACTGGGAATGAACTTCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
** * * * *
17038419 ATAAAAAGAGCGTGCGGGCGC-CAACCGGCCAGAGAGGCGGGATGCACAAGTCGGGGATTGATCG
66 ACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGATCG
* * * **
17038483 GGTCCCGCTCTGCTTGCTGCCAATCGTGCTGCCGCAACCCTTGGTCCGGTC-GATCTTAGACTAG
131 GGTCCCCCTCTGCTTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTAG
* *
17038547 GAATGAA-TCC----G--TAAGCCAACTGACGAAACGAGCGAGCGGGCGGCGCGGGTAGGCACCT
196 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGG-GC--G--GGCA-CT
* * * * *
17038605 ACGTCAGCCTAAGAGACGGGATGGCGCAAGCCGTCGGATCGATTAGCGGTAGTAGGTGGGTTTAG
255 ACGCCGGCCAAAGAGAC-AGAT-GCGCAAGCCGT-GGATCGA-TAG-GGTGGTAGGTGGGTTTAG
*
17038670 GCGACATCTTCATATTTCTG-ATGCCAATCGCCATTTTTGATTGGCTTGTAAATTCATACAATGG
315 GC-ACATCTTCATATTTCTGCGTGCCAAT-GCCATTTTT-A-TGGCTTGTAAATTCATACAATGG
* *
17038734 TCCCTTAAG-CTTCACATGAAGTTTCAT-GCAAGACGACTCGTTTTCTATTTTTTCACGGATTTT
376 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA-TTTTTCA-TGATTTT
* * * **
17038797 CAAAACTTTTTATGGTTTCGGGATTTTTTAAAATTTGTTTTCGGAAGGAGTTTTTGGCCCCAAAC
439 TAAAACTTTTTA-CGATTCAAGATTTTTTAAAA-TT-TTTTCGGAAGGAG-TTTTGGCCCCAAAC
*
17038862 TTGGTAGAACGTGATCCTTGTATTTTTGTTGGAATGCA-AAAAACAATTCAGCTAAAAACTCGAA
500 TTGGTAG-ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA-AATTCAGCTAAAAACTCGAA
17038926 GTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT-G
563 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* *
17038989 CAGCAAACCTGT-AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGTTTTGATGAGGGG
628 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA-GGG
* *
17039053 AT-AGGGGGCAATATAA-GGCCAAGTACCAGCA-CCATCG-ACCTCATGTGCGCACAACCCCCCG
692 ATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-ACCCCCCG
* * **
17039114 GCCCCCCGATCGCCGGAACTCCAATG-CATCGGTCCAGGTTTCTCCGGCGATGCTCTGGCGATGG
756 GCCCCCCGATCGTCGGAACCCCAATGCCGCCGGT-CAGG-TTCT-C--CGA--------CGATGG
* ** * * * * *
17039178 TGCCTCCCGGTGAAGAAAAATGCGGCACAAGTGCATGCCCTAGCCCAGTATGTGCTACCCGCAAC
808 TG-C-CCCGGTGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCT-GCCACAAC
* * *
17039243 CCTCGGTCCTAGTCTGAA
870 CCTCGGT-CTGGTCCGAT
* *
17039261 CTTAGACTGGGAATGAACTCCCATATGCTTAGAC-CGGAATGAACTCCCGTATGCCTAAGTCAAC
1 CTTAGACTGGGAATGAACT-CCGTATGCTTAGACTGGGAATGAACT-CCGTATGCCTAAGTCAA-
* * * *
17039325 CCCACGAAATGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCAG
63 CCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATC-G
* * * * * *
17039390 TTGGGGTCGCCCTCT-ATGTGCTG-CGATCCTGCTGCCGCAAACCCTCATTCCTGTCTGATCTTA
127 ATCGGGTCCCCCTCTGCT-TGCTGCCGATCCTGCTGCCGC-AACCCTCAGTCCGGTCTGATCTTA
** **
17039453 GACTAGGAATGAACTCCGTATGCCTAAAACAACCGATTAAACGAGCGGGCGGGCGGCGGCGGGCA
190 GACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC-G-GGCGGGC-
* * * ** *
17039518 ACTACGCCGGTCGAAGAAAGGGGATGCGCAAGCAGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
252 ACTACGCCGGCCAAAGAGA-CAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
*
17039583 CAC-TCTTCAATATTTCTGCATGCCAACTGCCATTTTTATGGCTTGTAAATTCATACAATGGT-C
316 CACATCTTC-ATATTTCTGCGTGCCAA-TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * * *
17039646 CTTAAGCCTTTACGTGAAGTTTCATGGCCAGACGACTCATTTTCTATTCTTCATGATTTTTAAAA
379 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAA
* *
17039711 CTTTTTACGATTCCA-ATTTTTTAAAATTTTTTCGGGAGGAGTTTTGGCCCCAAACTTGGTAGAC
444 CTTTTTACGATTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * *
17039775 ATGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCAAAAAACTCGAAGTGTACAAGAT
509 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* *
17039840 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAAACTTTAATGGCTACTGGCAGTAAACCTG
574 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* * *
17039905 TAAAATCTGAAATGCTCTTTAAGGGGGTGAGAGTTCTCGAGGTTTG-TGAGGGATAGGGGGCCAA
639 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAA
* * * * *
17039969 TTTAAGGGCCAAGTACCAGCACCCATCGCATATCATGTGCGTACACCCCCCGACCCCCTGATCG-
704 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGT
* * * * * *
17040033 CTAGAA-CCCAATGCCGTCGGTCAGGTTCTCCGGCGATCGTG-CCCGGCCGAAGAAAAATGTGGC
769 C-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGCCCCGG-TGAAGAAAAATGCGGC
* *** *
17040096 ACCAGCACATGCTCGAGCCCAGCATGTGCTGCCACAACCCTCGATCCAATTCGAT
832 ACCAGCACATGCTCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCTGGTCCGAT
* *
17040151 CTTAGACTGGGAATGAACTTCATATGCTTAGACTGGGAATGAAC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
17040195 NNNNNNNNNN
Statistics
Matches: 3931, Mismatches: 415, Indels: 314
0.84 0.09 0.07
Matches are distributed among these distances:
870 1 0.00
871 171 0.04
872 27 0.01
873 63 0.02
874 3 0.00
875 49 0.01
876 124 0.03
877 112 0.03
878 233 0.06
879 72 0.02
880 15 0.00
881 104 0.03
885 9 0.00
887 57 0.01
888 268 0.07
889 226 0.06
890 46 0.01
891 24 0.01
892 105 0.03
893 47 0.01
894 69 0.02
895 183 0.05
896 228 0.06
897 119 0.03
898 237 0.06
899 263 0.07
900 86 0.02
901 85 0.02
902 29 0.01
903 163 0.04
904 131 0.03
905 56 0.01
906 73 0.02
907 75 0.02
908 47 0.01
909 45 0.01
910 97 0.02
911 59 0.02
912 55 0.01
913 7 0.00
914 7 0.00
915 10 0.00
916 20 0.01
917 2 0.00
918 1 0.00
919 24 0.01
920 3 0.00
921 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (886 bp):
CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
ACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGATCG
GGTCCCCCTCTGCTTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTAG
GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCG
GCCAAAGAGACAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
TATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGATT
CAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAA
GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAAT
GCCGCCGGTCAGGTTCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCTC
GAGCCCAGCATGTGCTGCCACAACCCTCGGTCTGGTCCGAT
Found at i:17037495 original size:26 final size:26
Alignment explanation
Indices: 17037459--17037511 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17037449 CTCGTCCGAT
*
17037459 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGAATGGGAATGAACTCCATATG
*
17037485 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCATATG
17037511 C
1 C
17037512 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCATATG
Found at i:17038390 original size:26 final size:26
Alignment explanation
Indices: 17038354--17038406 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17038344 TCTGGTCCAT
*
17038354 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17038380 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17038406 C
1 C
17038407 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17039302 original size:26 final size:27
Alignment explanation
Indices: 17039261--17039314 Score: 83
Period size: 26 Copynumber: 2.0 Consensus size: 27
17039251 CTAGTCTGAA
*
17039261 CTTAGACTGGGAATGAACTCCCATATG
1 CTTAGACTCGGAATGAACTCCCATATG
*
17039288 CTTAGAC-CGGAATGAACTCCCGTATG
1 CTTAGACTCGGAATGAACTCCCATATG
17039314 C
1 C
17039315 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 18 0.72
27 7 0.28
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.24
Consensus pattern (27 bp):
CTTAGACTCGGAATGAACTCCCATATG
Found at i:17042933 original size:888 final size:894
Alignment explanation
Indices: 17041344--17052013 Score: 12484
Period size: 886 Copynumber: 12.0 Consensus size: 894
17041334 CCGATCCAAT
* * * * *
17041344 CTTAGACTGGGAATGAACTCTGTATGCCTAAATCAACCCAAGAAACGATCGTGCGGACGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGC
* * ** * * *
17041409 CGGCC-GAGGGGCGGGATGTGCAAGTCGGGGATCGGTCGGGTCCCATTCTGCGTGCTACGGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
*** * * * *
17041473 TGCTGTTGCAACCCTCAGTCCGGTCCAATCTTAGACT-GGAATGAACTCTGTATGCCTAAGCCAA
131 TGCTACCGCAACCCTTAGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
17041537 TCGACGAAACGAGCGGGCTAGCGGGCGGGCACTATGCGCAGGCCAGAGAGACGGGATGCGCAAGC
196 CCGACGAAACGAGC-GG--AGCGGGCGGGCACTA--CGCCGGCCAGAGAGACGGGATGCGCAAGC
* * * * * *
17041602 CGTGTATCGATAGGGTGTTAGGTGGGTTTAGG-ACAGCTTCATATTTCTACGTGCCAATGCCATT
256 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATGCATGCCAATGCCATT
* *
17041666 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGATGA
321 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * ** *
17041731 CTCATTTTCTATTTTTCACGATTTTTAAAACATTTTAAGGTTCG-GATTTTTTAAACTTTTTTGG
386 CTCGTTTTCTATTTTTCACGATTTTGAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTGG
* * *
17041795 AAGGAGTTTTGGCCCCAAACTTGGTGGCCGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA
451 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
17041860 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
516 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
17041925 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAATGCTCTTTGAGGAGGTGTGAGTT
581 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC-AAATGCTCTTTAAGGGGGTGTGAGTT
* *
17041990 CTTGAGGTTTGATGAGGGATAGGGGGCCAATAAAAGGGCCAAGTACCA-C-CCCATCGCACATCA
645 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * *
17042053 TGTGCACACACCCCCC-GCCCCGCGATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCTGACG
710 TGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACG
** * * * *
17042117 ATGCTCCGGTGATAGTGCCCCGACGAAGAAAAATATGGCACCAGCACATGCACGAGCCCAGTATG
775 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATG
* * * * * * *
17042182 TGCTACCGTAACACTTGGTCCAGTCCGATCTTAGATTGGGAATGAACTCCGTAGG
840 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
17042237 CTTGGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAACGTGCGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGC
* * * *
17042302 CGGCCAGAGGGGCGGGAGGCGTAAGTCGGGGATCGGTCGGGT-CCCCTCTACGTGCTGCCCATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
* ** * * *
17042366 TACTGTCGCAACCCTTAGTTCGGTCCGATCTGAGA-TGAGAATGAACTCCCTATGCCTAAGCCAA
131 TGCTACCGCAACCCTTAGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
17042430 CCGATGAAACGAGC-GAGTGGGCAGGCACTACGCCGGCCAGAGAGATGGGATGCG-AAG-CGATG
196 CCGACGAAACGAGCGGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG-TG
17042492 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTCTATGCATGCCAATGCCATTTTT
260 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT-TATGCATGCCAATGCCATTTTT
17042557 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
324 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* *
17042622 GTTTTCTATTTTTCACGATTTTGAAAACTTTTTACGGTT-GTGATTTTTTAAAATTTTTTGGAAG
389 GTTTTCTATTTTTCACGATTTTGAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTGGAAG
*
17042686 GAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTA-TTTT-TTGGCATGGCACAAAAAAATT
454 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT-GCACAAAAAAATT
*
17042749 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAATTGAAAAAAGTGTCCCCATTTCAGACA
518 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* *
17042814 CTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGCGGGTGTGAGTTCTC
583 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
17042879 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
648 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* *
17042944 GCGCACACCCCCTGGCCCCCCGATCATCGGAACCCCAATGCCGTCGGTACCCCAATGCCACCGGT
713 GCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAA-----T--G----CC---G---CCGGT
** * *
17043009 CAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGC
761 CAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGC
* * * * * *
17043074 TCGAGCCCAGCATCTGCTGCCGCAACCCTTGGTCCGATCCGATCTTCGACTAGGAATGAACTCCG
826 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCG
17043139 TATG
891 TATG
* *
17043143 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGC
* * * *** * * *
17043208 CAGCCAGAGGGGCAGGATGCGCAATCTAAGGATCGGTCGGGTCCCACTCTACGTGCTGTCGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * * *
17043273 TGCTACCGTAACCCTCAGTCCGATCCGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTACCGCAACCCTTAGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
17043338 CCGACGAAACGAGTGGGCAGGCAGGCGGGCGGGTAGGCATTACGCTGGCCAGAGAGACGGGATGC
196 CCGACGAAACGA----GC-GG-A-GCGGGC--G--GGCACTACGCCGGCCAGAGAGACGGGATGC
* * *
17043403 ACAAGCCGTGTATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
250 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATGCATGCCAAT
** *
17043468 GCCATTTTTATGGCAAGTAAAATCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
315 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * * * * **
17043533 AGATGACTCATTTTTTATTTTTCACGATTTTTG-AAACTTTTTGTGGTTCAAGATTTTTTAAACC
380 AGACGACTCGTTTTCTATTTTTCACGA-TTTTGAAAACTTTTTGCGGTTCGAGATTTTTTAAAAT
* * *
17043597 TTTTTGGAAGGAGTTCTGGCCCCAAACTTGGTGGACATGATCCTTGTATTTTTGTTGGCATGCAC
444 TTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* * * *
17043662 AAACAAATTCAGATAAAAACTCGTAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
509 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * *
17043727 TTT-AGACACTTTAATGGCTACTGTCTGCAAACCTGT-AAATCTCAAATGCTCTTTAAAGGGGTG
574 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* *
17043790 AGAGTTCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGTCAAGTACCAGCACCCATCGC
639 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* **
17043854 ACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAA-CCCAATGTCATCGGTCAGG---T
704 ACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * * * *
17043915 -------TG-TCCGACGATGGTGCCCCGATGAAGAAATATGCAGCACCAGCACATGCCTGAGCCC
769 CCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCC
** *
17043972 AGCATGTGCTGCCGCAACCCTCGGTCTAGTCCGATCTTAGACTGGGAATGAACTTCGTATG
834 AGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * **
17044033 CCTTAGACTGGGAAAGAACTCCGTATGCCTAAGTCAACCCACGAAATGGCCGTGC-GGCGCT-A-
1 -CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAG
* ** * *
17044095 -AGTACACGAGGGGCGGGATGCGCAAGCCGGGGAT-TGTCTGGGT-CCCCTCTACGTGCTGCCAA
65 CCGGCCA-GAGGGGCGGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCCCTCTACGTGCTGCCGA
* * * * * *
17044157 TCCTGCTACCGCAACCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCTGTATACCTAAGC
128 TCCTGCTACCGCAACCCTTAGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * * *
17044222 CAACCAACGAAACGAGCGGGTGGCGGGCGGGCATTACGTCGGCCAAAGAGACGGGATGCGTAAGC
193 CAACCGACGAAACGAGC-GG-AGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * * *
17044287 CGTGGATCGATAGGGTGGTAGGTGGATCTAGGCACATCTTCATATTTCTGCATTCCAATGCCA-T
256 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATGCATGCCAATGCCATT
* * *
17044351 TTTGTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCGAGACAA
321 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* *
17044416 CTCGTTTTCTATTTTTCACGATTTTCGAAAACTTTTTACGGTTCGAGATTTTTTAAACTTTTTTC
386 CTCGTTTTCTATTTTTCACGATTTT-GAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTT-
* * *
17044481 AGAAGGATTTTTGGCCCCAAACTTGGTAGACTTGATCCTTGTACTTTTT-TT-GCTATGCACAAA
449 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGC-ATGCACAAA
* * * * *
17044544 AGAATTTAGCGAAAAAATCGAAGTGTACAAGATTTTGTGACCATTAGAAAAAAGTGTCCCCATTT
512 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
17044609 GAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
577 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
17044674 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
642 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * *
17044739 TCATGTGCGCACACCCCCCCGGCCCCCTCGATTGTCGGAACCCCAATGCCGTCGGTAAGG---T-
707 TCATGTGCGCACA-CCCCCCGGCCCCC-CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * **
17044800 ------TG-TCCGACGACGGTGCCCCGACGAAGAAAAATGCGGCACC-GACACATGCCCGATTCC
770 CGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAG-CACATGCCCGAGCCC
* * ** *
17044857 AGCATGTGTTGCCGCAACCCTCGGTCCGATCAAATCTTAGACTGAGAATGAACTCCGTATG
834 AGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
** *
17044918 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC-AAAATAAGCGTGTGGGCGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAA-CGTGCGGGCGCTCAG
* ** * * * * * *
17044982 TCGGCCAGAGGTACGGGATGTGTAAGTCGGGGATCGGTCAGGTCCCCCTCTATGTGCTGTCGATC
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATC
* * * * * *
17045047 CTACTGCCCCAACCCTT-GATCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCC
130 CTGCTACCGCAACCCTTAGTTC-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * *
17045111 AACCGACGAAACGAGCAGACGGGCGGGCGGGCACTACGTCAGCCAGAGAGA-TGGATGCGCAAGC
194 AACCGACGAAACGAGC-G--GAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* *
17045175 CGAGGATCGATAGGGTGGTTGGTGGGTTTAGGCACATCTTCATATTTCTATG--TGCCAATGCCA
256 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA-TT-TATGCATGCCAATGCCA
** * *
17045238 TTTTTATGGCTCATAAATTCATACAATGGTCCCTTAATCCTTCACGTGAAGTTTCATGGCAAGAT
319 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
17045303 GACTCGTTTTCTATTTTTCATGATTTTTG-AAACATTTTGCGGTTCGAGATTTTTTAAAATTTTT
384 GACTCGTTTTCTATTTTTCACGA-TTTTGAAAACTTTTTGCGGTTCGAGATTTTTTAAAA-TTTT
* * *
17045367 TTGAAAGGAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTTTTTTGGCATGCACA
447 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA--TTTTTGTTGGCATGCACA
* * * *
17045432 ATAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGCCCCCAT
510 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* ** * * *
17045497 TTCAGACACTTTAGTAACAACTAGCAACAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGT
575 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * *
17045561 GAGTTCTCAAGATTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
640 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* *
17045626 CATCATGTGCGCACA-CCCCCGGCCCTCCCGATCGTCGAAACCTCAAT---G-C--T---G---T
705 CATCATGTGCGCACACCCCCCGGCCC-CCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * ** * *
17045678 ----CG--G-T----C-A-GGTTCTCCGACGAAGAAAAATGTGACACCAGGACATGCCCGAGCCC
769 CCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCC
* * * *
17045730 AGCATGTGCTGCCACAACCCTCGATCTGGTCCGATCTTAGAAT-GG---G-A------ATG
834 AGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
17045780 ---A-ACT-----TG-A-----TATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGC
* ** * * * ** *
17045830 CGGTCAGA-GGGTAGGATGTGCAAGTCGTGGATCGGTTTGGTCCCCCTCTGCGTGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * *
17045894 TGCTACCGCAACCCTT-GGTCTGACCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTACCGCAACCCTTAGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
17045958 CCAGA-GAAACGAGCGGTCGGGTAGGTGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
196 CC-GACGAAACGA---G-C-GG-A-GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
*
17046022 AGCCGTGGATCGATATGGTGGTAGGTGGGTTTAGGCACATCTTC------AT--A-GCCAATGCC
253 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATGCATGCCAATGCC
* *
17046078 ATTTTTATGCCTTGTAAATTCATACAATGGTCCCTTAAGCCTTGACGTGAAGTTTCATGGCAAGA
318 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * ** * *
17046143 CGACTCATTTTCTATTTTTAAGGATTTTCAAAACTTTTTGATGTTTGGGATTTTTTAAAATTTTT
383 CGACTCGTTTTCTATTTTTCACGATTTTGAAAACTTTTTGCGGTTCGAGATTTTTTAAAA-TTTT
* * *
17046208 TTGGAAGGAGTTTTGGCCCCAAACTTGTTAGACGTGGTCCTTGTATTCTTGTTGGCATGCACAAA
447 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
17046273 AAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
512 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
17046338 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
577 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
17046403 GTTCTCAAGGTTGGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACA
642 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* *
17046468 TCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTCTCC
707 TCATGTGCGCACACCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * *
17046533 GACGATGCTCCGACGATGGTGCCCCGGCGAAGAAAATTACAGCACCAGCACATGCTCGAGCCCAG
771 GACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAG
*
17046598 CATGTGCTGCCGCAA--CAC--T-C-G---G---TT----T--G---G---TCCG-AT-
836 CATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
** * * *
17046631 CTTAGACAAGGAATGAACTCCTTATGCCTAAGTCAATCCACGAAACGAGA-GTGCGGGCGCTCAA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA-ACGTGCGGGCGCTCAG
* * * * * * * * **
17046695 CCGACTAGAGGGGCGAGATCCGTAAGCCAGGGATCGGCCAGGTCCCCCTCCGCGTGCTGCCGATC
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATC
** ** * ** * ** *
17046760 CTGCTGTCGCAACCCTCGGTCCGGTCTAATCTTAGATTGGGAATGAACTCTATATGCTTAAGCCA
130 CTGCTACCGCAACCCTTAGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
17046825 ACCGACGAAACGAACGGGCGGGTGGGTGGGCGAGCACTACGCCGGACAAAGAGACGGGATGCGCA
195 ACCGACGAAACG-A---GC--G-GAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * *
17046890 AGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
253 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATGCATGCCAATGCC
*
17046955 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTGACGTGAAGTTTCATGGCAAGA
318 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
17047020 CGAATCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTT
383 CGACTCGTTTTCTATTTTTCACGATTTTGAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTT
* * * ** ** * * *
17047085 TCGAAAGGTA-CTTTGGCCCCAAACATATTAGTTGTGATCCCTGTATTCTTGTTGGCATGGACAA
448 T-GGAAGG-AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * *
17047149 AAAAATTCTGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAATTGTCCCCATT
511 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
17047214 TTAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
576 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* ** * *
17047279 AGTTCTCAAGGTTTGATGAGGGATA-GCAGCTAATATAAGGGCCAAGTACCAGCACCCATCCCAC
641 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * *
17047343 ATCATGTGTGCACACCACCCCTGGCACCCCCGATCGTCGGAACCCCAATGTCGCCAGTCAGGTTC
706 ATCATGTGCGCACACC-CCCC-GGC-CCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
* **
17047408 TCCGACGATGCTCCAACGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCC
768 TCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCC
* * * ** * *
17047473 CAGCATGTGCTACCGCAAACCTTGGTTTGATCCGATCTTAGACTGGGAATGAACTCCATATG
833 CAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
17047535 CTTAGACTGGGAATGAACTTCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCTA-
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTC-AG
* * * * * *
17047599 CCGGCCAGAGGGGCAGGATGCGTAAGCCGGGGATCGGTCGGGTTCCCCTCTATGTGCTACCAATC
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATC
17047664 CTGCTACCGCAACCCTTAG-TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
130 CTGCTACCGCAACCCTTAGTTC-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * * *
17047728 AACCAACGAAACAAGCGGGCGGGCGGGCGGGCACTACTCTGGCCAGAGAGACGGGATGCCCAAGC
194 AACCGACGAAACGAGC--G-GAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * **
17047793 CATGGATCGAT-GTGGTGGTAGGTGGGTTTAGGGACATCTTCATATTTCTATG--TGTGAATGCC
256 CGTGGATCGATAG-GGTGGTAGGTGGGTTTAGGCACATCTTCATA-TT-TATGCATGCCAATGCC
* **
17047855 ATTTTTATGCCTTGTAAATTCATACAATGGTCCCTTAAGCCTT-GTGTGAAGTTTCATGGCAAGA
318 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * * ** * *
17047919 TGACTCATTTTCTATTTTTAATGATTTTCAAAACTTTTTGCAATTTGGGATTTTTTAAAATTTTT
383 CGACTCGTTTTCTATTTTTCACGATTTTGAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTT
* ** ** * * *
17047984 TCGAAAAAAGTTTTGGCCCCAAACTTATTAGACGTGA-CCTTGTATTCTTGTTGACATGCATAAA
448 T-GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
17048048 AAAATTCAACTAAAAAATTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
512 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
17048113 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
577 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
** * *
17048178 GTTCTTAAGGTTGGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACAAGCACCCATCGCACA
642 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * *
17048243 TCATGTGCACACACCCCCCCGACCCCCCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTT
707 TCATGTGCGCACA-CCCCCCG-GCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * * ** * * *
17048308 CGATGAAGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGTACATGCCCAAGCCCA
770 CGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCA
* * ** * * **
17048373 G-ATGTGCCGTCGCAACCCTTAGTCCGGTCTGATCCTAGACTGGGAATGAACTTTGTATG
835 GCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
17048432 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACGCACAAAAC-AAGCGTGCGGGCGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAA-CGTGCGGGCGCTCAG
* * * * **
17048496 CCGACCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGAGTCCCCCTCTACATGCTATCGATC
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATC
* ** * * * * * * * *
17048561 TTGCCGCCACAACCTTTGGTCCGGTCGGATCTTAGAGTGGGAATGAACTCCATAAGCCTAAGCCA
130 CTGCTACCGCAACCCTTAGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
17048626 ACCGACGAAACGAGCGGCTGGGCGGGCGAGCGGGCAAGCACTACGTCGGCCAGAGAGATGGGATG
195 ACCGACGAAACGAGC-G--GAGC--G-G-GC-GG---GCACTACGCCGGCCAGAGAGACGGGATG
* * * * * * *
17048691 CGTAAGCTGTGTATCGATAGGGTGGTAGGTGGGTTTTGGAACATCTTCATATTTCTGCGTGCCAA
249 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATGCATGCCAA
* *
17048756 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAACCCTTCACGTGAAGTTTCGTGGC
314 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * *
17048821 AAGACGACTCGTTTTCTATTTTTCATGATTTTTG-AAACTTTTTGC--TATCGGGGATTTTTTCA
379 AAGACGACTCGTTTTCTATTTTTCACGA-TTTTGAAAACTTTTTGCGGT-TC-GAGATTTTTTAA
* * *
17048883 AATTTTGTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCAT
441 AATTTT-TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
17048948 GCACAAAAAAATTCATG-TAAAAACTCGAAGTGTACAAGATTTTGTGA-C----------A----
505 GCACAAAAAAATTCA-GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
* * *
17048997 ----ATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTCAGG
569 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* * * *
17049058 GGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGCCCAAGTAACAGAACCC
634 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * * * *
17049123 ATCACACATCATGTGCGCACACCCCCCAGTCCCCTCGATCGCCGGAA-CCCAATGCCGTCGGTCA
699 ATCGCACATCATGTGCGCACACCCCCC-GGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCA
* * * * ** **
17049187 GGTTCTCTGACGTTGCTTCGACGATGGTACCCCGGTGAAGAAAAATGTGGCACCAGCACATGCCC
763 GGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCC
* * * * *
17049252 AAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATA
828 GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
17049317 TG
893 TG
* * *
17049319 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGC
* * ** * * * * ** *
17049384 TGGCTAGAGGGGCCAGATGCACAAGCCGGGGATCAGTTGGGTCCCCCTCTATGTGCTATCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
* ** * * *
17049449 TGCTGCCATAACCC-TCGATCTGGTCTC-ATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCC
131 TGCTACCGCAACCCTTAGTTC-GGTC-CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * *
17049512 AACCAACGAAACAAGCAGGCGG-GCGGGCGGGTGGGCACTACGTCGGCCAGAGAGACGGGATGTG
194 AACCGACGAAAC--G-A-GCGGAGCGGGC----GGGCACTACGCCGGCCAGAGAGACGGGATGCG
* * *
17049576 CAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGAATGCCAATG
251 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATGCATGCCAATG
*
17049641 CCATTTTTATGGCTTGTAAATTCGTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
316 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * * *
17049706 GACGACTCGTTTTCAATTTTTCATGATTTTTG-AAACTTTTTGCAGTTCGGGATTTTTTTAAATT
381 GACGACTCGTTTTCTATTTTTCACGA-TTTTGAAAACTTTTTGCGGTTCGAGATTTTTTAAAATT
*** * *
17049770 TTTTCGGAAGGAGTTTTTTTCCCAAACTTGGTAGACGTGATCCTTTTATTTTTTTTGG-ATGCAC
445 TTTT-GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
*
17049834 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGCCCCCA
509 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
*
17049899 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTG
574 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * * *
17049964 TGAGTTCTTGAGGCTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGGACCAGCAGCCATCGC
639 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * * *
17050029 ACATCATGTGCGCACACCCCCCCGGCCCCTCTGATCGCCGAAACCCTAATGCCGCCGGTCATGTT
704 ACATCATGTGCGCACA-CCCCCCGGCCCC-CCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
* * * * *
17050094 CTCCGGCGATGCTCCGACGATGGTGCCCTGACGAAGAAAAATACGACACCAACACATGCTCGAGC
767 CTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGC
* ** ** * * *
17050159 CCAGCATGTGCTGCCGTAACCCTCCATCTAGTTCGGTCTTAGACTGGGAATGAACCCCGTATG
832 CCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
*
17050222 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTGAACCCACGAAACGAACGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGC
* * *
17050287 CGGCTAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACATGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * * * **
17050352 TGCTACCGCAACGC-TCGATGT-AGTCTGATCTTAGACTGGGAATGAACTCCATATATCTAAGCC
131 TGCTACCGCAACCCTTAG-T-TCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * *
17050415 AACCGACG----G-GCGG-GTGGGCGGACACTACGCCGACTAGAGAGACGGGATGCGCAAGCCGT
194 AACCGACGAAACGAGCGGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
* *
17050474 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGAATGCCAATGCCATTTTT
259 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATGCATGCCAATGCCATTTTT
*
17050539 ATGGCTTGTAAATTCGTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
324 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * *
17050604 GTTTTCTATTTTTCTCGATTTTTAAAACTTTTTGTGGTTC-AGGATTTTTTAAAATTTTTTCGGA
389 GTTTTCTATTTTTCACGATTTTGAAAACTTTTTGCGGTTCGA-GATTTTTTAAAATTTTTT-GGA
* ** * * *
17050668 AGAAGTTTTTACCCCAAACCTGGTAGACATGATCCTTGTATTTTTGTTGGCGTGCACAAAAAAAT
452 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* * * *
17050733 TCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCGTTTGAAAAAA-----CCAATTCCAGAC
517 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * * *
17050793 ACTTTAATAGCTAATGGCAGCAAACCTGTAAAATCTTAAAGGCTCTTTAAGGGGGTGTGAGTTCT
582 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * **
17050858 CGAGGTTTGATGAGGGATAAGGGGCCAATATAAGTGCCAAGTACCAGCACCCATCATACATCATG
647 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * **
17050923 TGTGCACACCCCCCCGAGCCCCCCGATTGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTG
712 TGCGCACA-CCCCCCG-GCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACG
** * * *
17050988 ATGCTCCGGTGATGATGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
775 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATG
* * **
17051053 TGCTACTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTTGTATG
840 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
17051108 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAATCCACGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGC
* * * * * *
17051173 AGGCCAGAGGGGCGGGATGTGCAAGCCGTGGATCGATCGGGTCCCCCTCCATGTGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
*
17051238 TGCTACCGCAA-CCTTCAG-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
131 TGCTACCGCAACCCTT-AGTTC-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* *
17051301 AACCGACGAAACGAGCAGACGGGCGGGCGAGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGC
194 AACCGACGAAACGAGC-G--GAGC--G-G-GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
** * *
17051366 AAATCGTGGATCGATACGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
252 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATGCATGCCAATGC
* * *
17051431 CATTTTTATGGCTTGTAAACTCATACAATGGTCTCTTAAGCCTTCACGTCAAGTTTCATGGCAAG
317 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * *
17051496 ACGACTCATTTTTTATTTTTCACAATTTTTG-AAACTTTTTGCGGTTCGAGATTTTTTAAAATTT
382 ACGACTCGTTTTCTATTTTTCACGA-TTTTGAAAACTTTTTGCGGTTCGAGATTTTTTAAAA-TT
* * ** * ** *
17051560 TTTTCGAAGGATTTTTGGCCCCAAACTCAGTAGACATGATCCTTGTATTTTACTTGACATGCACA
445 TTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* *
17051625 AAACAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
510 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
17051690 TTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTATTTAAGGGGGTGT
575 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
** * * *
17051755 GAGTTCTCGAGGTTTGATGAGGGATACAGGGCCAATATAAGGGCCAATTACCAGAACCCATCACA
640 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * * *
17051820 CATCATGAGCGTACACCCCCCACGGCCCCCCCAATCGTCGGAACCCCAATACCGCCGGTCAAGTT
705 CATCATGTGCGCACA-CCCCC-CGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
** * * * *
17051885 CTCCGGTGATGCTCCGACGATGGTGCCTCGACGAAGTAAACTACGGCACCAACACATGCCCGAGC
767 CTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGC
* * * * * *
17051950 CCAGCAAGTGCTGCTGCAACCCTCGGTCTGATCCGATCTTAGATTGGGAATGAACTGCGTATG
832 CCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
17052013 C
1 C
17052014 CTAAACCGAA
Statistics
Matches: 8455, Mismatches: 1029, Indels: 574
0.84 0.10 0.06
Matches are distributed among these distances:
839 127 0.02
840 87 0.01
841 186 0.02
842 5 0.00
844 1 0.00
845 49 0.01
846 63 0.01
847 40 0.00
848 5 0.00
849 31 0.00
850 52 0.01
852 3 0.00
853 3 0.00
854 3 0.00
855 2 0.00
857 3 0.00
858 3 0.00
859 2 0.00
860 4 0.00
861 1 0.00
862 4 0.00
864 3 0.00
865 1 0.00
866 94 0.01
867 58 0.01
868 125 0.01
869 6 0.00
870 1 0.00
872 1 0.00
873 72 0.01
874 3 0.00
875 1 0.00
876 59 0.01
877 407 0.05
878 241 0.03
879 107 0.01
880 37 0.00
881 54 0.01
882 107 0.01
883 280 0.03
884 61 0.01
885 129 0.02
886 646 0.08
887 542 0.06
888 586 0.07
889 245 0.03
890 495 0.06
891 118 0.01
892 2 0.00
893 143 0.02
894 45 0.01
895 1 0.00
896 7 0.00
897 224 0.03
898 267 0.03
899 458 0.05
900 148 0.02
901 151 0.02
902 23 0.00
903 300 0.04
904 310 0.04
905 267 0.03
906 309 0.04
907 110 0.01
908 39 0.00
911 1 0.00
912 2 0.00
913 1 0.00
914 1 0.00
915 1 0.00
916 5 0.00
918 5 0.00
919 75 0.01
920 189 0.02
921 138 0.02
922 73 0.01
923 7 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (894 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
TGCTACCGCAACCCTTAGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATGCATGCCAATGCCATTTTTAT
GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
TTTCTATTTTTCACGATTTTGAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTGGAAGGA
GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
CACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTC
CGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
CGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:17042990 original size:17 final size:17
Alignment explanation
Indices: 17042970--17043002 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
17042960 CCCCCGATCA
17042970 TCGGAACCCCAATGCCG
1 TCGGAACCCCAATGCCG
*
17042987 TCGGTACCCCAATGCC
1 TCGGAACCCCAATGCC
17043003 ACCGGTCAGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.42, G:0.21, T:0.15
Consensus pattern (17 bp):
TCGGAACCCCAATGCCG
Found at i:17043008 original size:17 final size:17
Alignment explanation
Indices: 17042975--17043008 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
17042965 GATCATCGGA
**
17042975 ACCCCAATGCCGTCGGT
1 ACCCCAATGCCACCGGT
17042992 ACCCCAATGCCACCGGT
1 ACCCCAATGCCACCGGT
17043009 CAGGTTCTCC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.44, G:0.21, T:0.15
Consensus pattern (17 bp):
ACCCCAATGCCACCGGT
Found at i:17043574 original size:26 final size:27
Alignment explanation
Indices: 17043544--17043601 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 27
17043534 GATGACTCAT
** *
17043544 TTTTTATTTTTCACGATTTTTGAAA-C
1 TTTTTATGGTTCAAGATTTTTGAAACC
* *
17043570 TTTTTGTGGTTCAAGATTTTTTAAACC
1 TTTTTATGGTTCAAGATTTTTGAAACC
17043597 TTTTT
1 TTTTT
17043602 GGAAGGAGTT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 20 0.77
27 6 0.23
ACGTcount: A:0.21, C:0.10, G:0.10, T:0.59
Consensus pattern (27 bp):
TTTTTATGGTTCAAGATTTTTGAAACC
Found at i:17044045 original size:27 final size:27
Alignment explanation
Indices: 17044007--17044062 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
17043997 CTAGTCCGAT
* *
17044007 CTTAGACTGGGAATGAACTTCGTATGC
1 CTTAGACTGGGAAAGAACTCCGTATGC
17044034 CTTAGACTGGGAAAGAACTCCGTATGC
1 CTTAGACTGGGAAAGAACTCCGTATGC
17044061 CT
1 CT
17044063 AAGTCAACCC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (27 bp):
CTTAGACTGGGAAAGAACTCCGTATGC
Found at i:17044921 original size:26 final size:26
Alignment explanation
Indices: 17044892--17044944 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17044882 CCGATCAAAT
17044892 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
17044918 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
17044944 C
1 C
17044945 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:17047545 original size:26 final size:26
Alignment explanation
Indices: 17047509--17047561 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17047499 TTGATCCGAT
17047509 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17047535 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
17047561 C
1 C
17047562 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17048456 original size:26 final size:26
Alignment explanation
Indices: 17048408--17048458 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17048398 GGTCTGATCC
**
17048408 TAGACTGGGAATGAACTTTGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
17048434 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
17048459 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:17049329 original size:26 final size:26
Alignment explanation
Indices: 17049293--17049345 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17049283 CTGGTCTGAT
17049293 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17049319 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17049345 C
1 C
17049346 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17050232 original size:26 final size:26
Alignment explanation
Indices: 17050196--17050248 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17050186 CTAGTTCGGT
17050196 CTTAGACTGGGAATGAACCCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
*
17050222 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
17050248 C
1 C
17050249 CTAAGTGAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCGTATG
Found at i:17051132 original size:26 final size:26
Alignment explanation
Indices: 17051082--17051134 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17051072 CCGGTCCGAT
**
17051082 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17051108 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17051134 C
1 C
17051135 CTAAGTCAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17052711 original size:26 final size:26
Alignment explanation
Indices: 17052636--17052711 Score: 125
Period size: 26 Copynumber: 2.9 Consensus size: 26
17052626 CCGGTCTGAT
**
17052636 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
17052662 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
17052688 CTTAGACTGGGAATGAACTCTGTA
1 CTTAGACTGGGAATGAACTCTGTA
17052712 CGTCTAAGTC
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:17054476 original size:26 final size:26
Alignment explanation
Indices: 17054447--17054497 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17054437 GGTCCGATGG
17054447 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
*
17054473 TAGATTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
17054498 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:17055381 original size:26 final size:26
Alignment explanation
Indices: 17055345--17055397 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17055335 CTCGTTCGAT
*
17055345 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGAATGGGAATGAACTCCATATG
*
17055371 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCATATG
17055397 C
1 C
17055398 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCATATG
Found at i:17056279 original size:26 final size:26
Alignment explanation
Indices: 17056243--17056295 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17056233 CTAGTCCAAT
*
17056243 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17056269 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17056295 C
1 C
17056296 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17056988 original size:902 final size:897
Alignment explanation
Indices: 17052662--17058175 Score: 7332
Period size: 900 Copynumber: 6.2 Consensus size: 897
17052652 ACTCCATATG
** * * *
17052662 CTTAGACTGGGAATGAACTTTGTATGCTTAGACTGGGAATGAACTCTGTACGTCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * * * *
17052727 ATGGAACGAGCGTGCGGGCACTCGACCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGATCG
66 ACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGACCG
* * * *
17052792 GGTCCCCCTCTACATGCTGTCGATCCTGCTGCCGCAACCCTC-GATCCGGTCTGATCTTAGACTA
131 GGTCCCCCTCTGCTTGCTGCCGATCCTACTGCCGCAACCCTCAG-TCCGGTCTGATCTTAGACTA
* * * *
17052856 GGAGTGAACTCCGTATGCCTAAGCCAACCGATGAAACGA----GCGGGCGGGCAGGCACTACACC
195 GGAATGAACTCCGTATGCCTAAGCCAACCGAAGAAACGAGCGGGCGGGCGGGCGGGCACTACGCC
* * * *
17052917 GGCCAGAGAGACGAGATGCGCAAGCCGTAGATCGATAGGGTGGTAGGTTGGTTTAGGCACATCTT
260 GGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* * *
17052982 CATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTT
325 CATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* ** *
17053047 CACGTGAAGTTTCATGGCAAGACGACCCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACAT
390 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAC-G
* *
17053112 TTTGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT-GTAGACGTGATCCTTG
454 GTTCAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
* *
17053176 TATTTTTGTTGGCATGCACAAAAAAATTCAGGTAAAAAAC-CGAAGTGTACAAGATTTTGCGACC
519 TATTTTTGTTGGCATGCACAAAAAAATTCAGCT-AAAAACTCGAAGTGTACAAGATTTTGTGACC
* * * *
17053240 ATTTGAAAAAAATG-CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCCGCAAAATCTC
583 ATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
17053304 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
648 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* * * *
17053369 CAAGTACCAGCACCAATCGTACATCATGTGCGCAAAACCCCCCTCCCCCGGCCCCCCCGATCGCT
713 CAAGTACCAGCACCCATCGCACATCATGTGCGC---A---CAC-CCCCCGGCCCCCCCGATCGCC
* * *
17053434 GGAACCCCAATGCCGCCAGTCAAGTTCTCTGGCGATGGT---GC----GT---C-GGTGAAGAAA
771 GGAACCCCAATGCCGCCAGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCAGG-GAAGAAA
* * * * * *
17053488 AAGGCAGCACCAGCACATTCTCGAGCCCAGCATGTGCTGCAACAACCCTCGGTATGGTCCGAT
835 AATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCTAGTCCGAT
*
17053551 CTTTGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * ** * * * * * *
17053616 ATGAAATG-GACGTACGGGCGTTCAGTCGGCCAGAGGGGCGAGACGCGCAAGCCGGGAATCGGCT
66 ACGAAACGAG-CGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGACC
* * * ** * * * * * *
17053680 AGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCAATTTGGTTTGACCTGAAATTG
130 GGGTCCCCCTCTGCTTGCTGCCGATCCTACTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTA
* * *
17053745 GGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGA----GCGTGCGGGCGGGCACTACGCC
195 GGAATGAACTCCGTATGCCTAAGCCAACCGAAGAAACGAGCGGGCGGGCGGGCGGGCACTACGCC
* * *
17053806 GGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGATTGGGTGGTAGGTGGGTTTAGGCACATCTT
260 GGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* *
17053871 CATATTTCTGCATGCCAATGCCATGTTTATGGCTTGTAAATTCATACAATGGTCTCTTAAGCCTT
325 CATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * *
17053936 CACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTAACGATTTTTGAAACTTTTTACGG
390 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGG
* * * *
17054001 TTCAGGATTTTTTAAAATGTTTTCGAAAGGAGTTTTGGTCCCAAACTTGGTCGACGTGATCCTTG
455 TTCA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
* * * * *
17054066 AATTTTTGTTGGCATGCATGAAAAACA-TCAGCTAAAAACTCGAAGTGTACAAGATTTTTTGATC
519 TATTTTTGTTGGCATGCA-CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
* *
17054130 ATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
583 ATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* * *
17054195 AAATGCTCTTTAAGGGGGTTTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGAGC
648 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* * * *
17054260 CAAGTACCAGCACTCATCGCACATCATGTGCGCACA-CCCCCGACCTCCCCGATCGTCGGAACCC
713 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCC
* * * * ** * * *
17054324 CAATACCGTCAATCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCCGAGAAAGAAATATGCGG
778 CAATGCCGCCAGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCAG-GGAAGAAAAATGCGG
* * * * * *
17054389 CACCAGCTCAAGCTCGAGCCAAGCATGTGCTGTCACAACCCTCCGTCTGGTCCGAT
842 CACCAGCACATGCTCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCTAGTCCGAT
** *
17054445 GGTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * *
17054510 ATGAAACGAGCGTGCAGGCGCTCAACCGGCCAGAGAGGCGGGATGCACAAGCCGAGGATCGACCG
66 ACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGACCG
* * * ** * *
17054575 GGTCCCCCTCTGCTTGCTGCCAATCCTGCTACCGCAACCCTTGGTCCAGTCTGATCTTAGACTGG
131 GGTCCCCCTCTGCTTGCTGCCGATCCTACTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTAG
* ** * *
17054640 GAATGAACTCCGTATGCCAAAGTGAACCGACGAAACGAGCGGGCGGGCGGGTGGGTGGCCACTAC
196 GAATGAACTCCGTATGCCTAAGCCAACCGAAGAAACGAGCGGGCGGGC-GG-GCG-GG-CACTAC
* * *
17054705 GCCGGCCAAAGAGACGAGATGCGCAAGCCGTGGATCGATAGTGTGGTAGGTGGGTTTAGGTACAT
257 GCCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* **
17054770 CATCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
322 CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* *
17054835 CTTCACCTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTA
387 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTA
* * *
17054900 CGGTTCAAGATTTTTT-AAATTTTTTGGGTATGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
452 CGGTTC-AGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* * *
17054964 TTGTATTTTTGTTGGAATGGACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGA
516 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* * *
17055029 CCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATCGCTACTGGTAGCAAACTTGTAAAATC
581 CCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* * * *
17055094 TCAAATGCTCTTTAAGGTGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGTCTAATATAAGG
646 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
*
17055159 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCA-ACCCCCCTG-CCCCCCGATCGCCGGAAC
711 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAAC
* * * * *
17055222 CCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCGGGCGATGGTGCCCCAGTGAAGAAAAATGT
776 CCCAATGCCGCCAGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTG-CCCAGGGAAGAAAAATGC
* * * * * *
17055287 GCCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTCGTTCGAT
840 GGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCTAGTCCGAT
* *
17055345 CTTAGACTGGGAATGAACTCCATATGCTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * ** * * **
17055410 ACGAAACGAGCGTACGAGCGCTCAGGCGGCCAGAGGTGCAGGAT-CACAAGTTGGGGATCGACCG
66 ACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGACCG
* * * * *
17055474 GGTCCCCCTCTACGTGCTGTCGATCCTAATGTCGCAACCCTCAGTCCGGTCTGATCTTAGACTAG
131 GGTCCCCCTCTGCTTGCTGCCGATCCTACTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTAG
* * * *
17055539 GAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGTGCGGGCGGGCGGGCACTTCGCCG
196 GAATGAACTCCGTATGCCTAAGCCAACCGAAGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCG
17055604 GCC--AGAGACGCAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
261 GCCAAAGAGACG--GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* *
17055667 TCATATTTTTGCATGCCAATGCCATGTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
324 TCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
17055732 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACG
389 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACG
* * * *
17055797 GTTCAGGATTTTTTAAAATGTTTTCGAAAGGAGTTTTGGTCCCAAACTTGGTCGACGTGATCCTT
454 GTTCA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
* * * * *
17055862 GAATTTTTGTTGGCATGCATGAAAAACA-TCAGCTAAAAACTCGAAGTGTACAAGATTTTTTGGC
518 GTATTTTTGTTGGCATGCA-CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* * * *
17055926 CATTTGAAAAAAGTGTCCGCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTATAAAATCT
582 CATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
17055991 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
647 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* * * ** *
17056056 CCAAGAACCAGCACCCATCACACATCATGTGCGCACACCCGCCGGCCCCCCCGATCATCGAAACC
712 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACC
* * * * *
17056121 CTAATACCGCCAGTCAGGTTCTCCGGTGATGCTCCAGCGATGGTGCCCAAGGGAAGAAATATGCG
777 CCAATGCCGCCAGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCC-AGGGAAGAAAAATGCG
* * * *
17056186 GCACCAGCACATGCTCGAGCGCAGCATGTGCTGCCGCATCCCTCGGTCTAGTCCAAT
841 GCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCTAGTCCGAT
* *
17056243 CTTAGACTGGGAATGAACTTCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * ** *
17056308 ACAAAACGAGCGTGCGGGCG-TCCAACCGGCCAGAGAGGCGGGATGCACAAGTAGGGGATCGATC
66 ACGAAACGAGCGTGCGGGCGCT-CAACCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGACC
* * * * * * ** *
17056372 GGGTCTCGCTCTGCTTGCTACCAATCGTGCTGCCGCAACCCTTGGTCCGGTCCGATCTTAGACTA
130 GGGTCCCCCTCTGCTTGCTGCCGATCCTACTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTA
* *
17056437 GGAATGAACTCCGTATGCCTAAGCCAACTGAATAAACGAGCGGGCGGGCGGGCGGGCAGGCACTA
195 GGAATGAACTCCGTATGCCTAAGCCAACCGAAGAAACGAGCGGGCGGGCGGGC--G--GGCACTA
* * * *
17056502 CGCCGGCCAAAGAGATGGGATGCGCAAGTCGTGGATCGATAGTGTAGTAGGTGGGTTTAGGCACA
256 CGCCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
** *
17056567 TCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAG
321 TCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
*
17056632 CCTTCACCTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT
386 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT
* * * *
17056697 ACGGTTCGAGATTTTTAAAAATTTTTTGGGTAGGAGTTTTGGCCCCAAA-TTGGTAGACGTAATC
451 ACGGTTC-AGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
*
17056761 CTTGTATTTTTGTTGGAATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
515 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
17056826 ACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
580 ACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
*
17056891 CTCAAATGCTCTTTAAGGGGTTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
645 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * * *
17056956 GGCCATGTACCAGCACCCATAGAACATCATGTGCACACAACCCCCCCGGCCCCCCCGATCGCCGG
710 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-A-CCCCCCGGCCCCCCCGATCGCCGG
** * * *
17057021 AACCCCAATGCCATCGGTCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGGTGAAGAAAAA
773 AACCCCAATGCCGCCAGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCAGG-GAAGAAAAA
** * * * * * * *
17057086 TGCGGCACCAGTGCATGCCCTAGCCCAGTATGTGCTACCGCAACCCTCGGTCTAGTCTGAA
837 TGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCTAGTCCGAT
*
17057147 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTACGTATGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * ** * *
17057212 ACGAAATGAGCGTGCGGGCGCTCAGCTAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-AGCT
66 ACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGA-CC
* * *
17057276 GGGTCCCCCTCT-ATGTGCTGCCGATCCTACTGCCGCAACCCTCATTCCTGTCTGATCTTAGACT
130 GGGTCCCCCTCTGCT-TGCTGCCGATCCTACTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACT
* ** *
17057340 GGGAATGAACTCCGTATGCCTAAAACAACCGATGAAACGAGCGGGCGGGCGGGCGGGCACTACGC
194 AGGAATGAACTCCGTATGCCTAAGCCAACCGAAGAAACGAGCGGGCGGGCGGGCGGGCACTACGC
* * * *
17057405 CGGTCGAAGAAACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
259 CGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
17057470 TCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
324 TCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * * * *
17057535 TTACGTGAAGTTTCATGGCCAGACGACTCATTTTCTATTCTTCATGATTTTTAAAACTTTTTACG
389 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACG
* * * *
17057600 ATTCCAAATTTTTTAAAATTTTTTCGGGAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTT
454 GTT-CAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
* *
17057665 GTATTTTTGTTGGCATGCACAAAACAATTCAGCAAAAAACTCGAAGTGTACAAGATTTTGTGACC
518 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
*
17057730 ATTTGAAAAAAGTGTCCCCATTTCAGAA-ACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCT
583 ATTTGAAAAAAGTGTCCCCATTTCA-AACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* * *
17057794 GAAATGCTCTTTAAGGGGGTGAGAGTTCTCGAGGTTTG-TGAGGGATAGGGGGCCAATTTAAGGG
647 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* * * * **
17057858 CCAAGTACCAGCACCCATCGCATATCATGTGCGTACACCCCCCGACCCCCCTGATCGCTAGAACC
712 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACC
* * *
17057923 CCAATGCCGTCGGTCAGGTTCTCCGGCGAT-CGTGCC--CGA------CC---GAAGAAAAATGT
777 CCAATGCCGCCAGTCAGGTTCTCCGGCGATGC-T-CCGGCGATGGTGCCCAGGGAAGAAAAATGC
* * * * *
17057976 GGCACCAGCACATGCTCGAGCCCAGCATGAGCTGCCACAACCCTCGATCCAATTCGAT
840 GGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCTAGTCCGAT
* * *
17058034 CTTAGACTGGGAATGAACTTCATATGCTTAGACTGGGAATGAACTCCGCATGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * * ** **
17058099 ACGAAACGAGCGTACGAGCGCTCAGCCGACCAAAGGGGCGGGATGCGTAAGCCGGGGATCGGTCG
66 ACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGACCG
17058164 GGTCCCCCTCTG
131 GGTCCCCCTCTG
17058176 TGTGTTACCG
Statistics
Matches: 4055, Mismatches: 507, Indels: 127
0.86 0.11 0.03
Matches are distributed among these distances:
883 49 0.01
885 1 0.00
887 180 0.04
888 5 0.00
889 434 0.11
890 73 0.02
891 147 0.04
893 8 0.00
894 253 0.06
895 197 0.05
896 248 0.06
897 23 0.01
898 273 0.07
899 235 0.06
900 498 0.12
901 436 0.11
902 426 0.11
903 230 0.06
904 332 0.08
905 7 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (897 bp):
CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
ACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGACCG
GGTCCCCCTCTGCTTGCTGCCGATCCTACTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTAG
GAATGAACTCCGTATGCCTAAGCCAACCGAAGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCG
GCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGT
TCAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
TGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAA
TGCCGCCAGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCAGGGAAGAAAAATGCGGCACC
AGCACATGCTCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCTAGTCCGAT
Found at i:17057183 original size:26 final size:26
Alignment explanation
Indices: 17057147--17057199 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17057137 CTAGTCTGAA
*
17057147 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
17057173 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
17057199 C
1 C
17057200 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:17058086 original size:26 final size:26
Alignment explanation
Indices: 17058034--17058086 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17058024 CCAATTCGAT
* *
17058034 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCACATG
*
17058060 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCACATG
17058086 C
1 C
17058087 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCACATG
Found at i:17059231 original size:725 final size:726
Alignment explanation
Indices: 17058197--17060214 Score: 3321
Period size: 725 Copynumber: 2.8 Consensus size: 726
17058187 TCTTGCTAAT
*
17058197 CGACGAAACGAGGGGGCGGGTGGGCGGGCGAGCTCTACGCCCGCCAGAGAGACAGGATGCGCAAG
1 CGACGAAACGAGCGGGCGGGTGGGCGGGC-A---CTACGCCCGCCAGAGAGACAGGATGCGCAAG
17058262 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
62 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
*
17058327 TTTTATGGCATATAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCGAGACG
127 TTTTATGGCATATAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * ** * *
17058392 ATTCGTTTTCTATTTTTCACAATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTC
192 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGAATTTTTAAAATTTTTTC
17058457 GGAAGGAGTTTTGGCCCCAAACCTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
257 GGAAGGAGTTTTGGCCCCAAACCTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
*
17058522 GATTCAGCTAAAAACTCGAAGTTTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTTA
322 GATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTTA
17058587 GACACTTTAATGGCAATTGGCGGCAAACCTGAAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
387 GACACTTTAATGGCAATTGGCGGCAAACCTGAAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
17058652 TCTCGAGGTTTGATGAAGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCTATCGCACATC
452 TCTCGAGGTTTGATGAAGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCTATCGCACATC
*
17058717 ATGTGTGCACACCCCCCGGCCCAACCCGATTGTCGAAACCCCAATGCTGTCGGTCAGGTTTTCCG
517 ATGTGTGCACACCCCCCGGCCCAACCCGATTGTCGAAACCCCAATGCTGTCGGTCAGGTTTTCAG
*
17058782 ACGATGC-CCGACGATAAAAATGCGGCACCAGCACATGCCCGAGCCGCGCATGTGCTGCCGTAAC
582 ACGATGCTCCGACGATAAAAATGCGGCACCAGCACATGCCCGAGCCACGCATGTGCTGCCGTAAC
* *
17058846 CCTCGATTCGGTCCGATTTTAGACTGGGAATGAACTCTGTTTGCTCAGACTGGGAATGAACTTCG
647 CCTCGATTCGGTCCGATTTTAGACTGGGAATGAACTCCGTTTCCTCAGACTGGGAATGAACTTCG
17058911 TATGCCTAAGCCAAC
712 TATGCCTAAGCCAAC
* ** *
17058926 CGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCTTGTCAGAGAGACAGGATGCGCAAGCCGT
1 CGACGAAACGAGCGGGCGGGTGGGCGGGCACTACGCCCGCCAGAGAGACAGGATGCGCAAGCCGT
17058991 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
66 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
* * *
17059056 ATGGCATATAAATTCATACAATGGTCCTTTAAGCCTTAACGTGAAGTTTCATGGCAAAACGACTC
131 ATGGCATATAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * * *
17059121 GTTTTTTATTTTTCATGATTTTTGAAACTTTTTACAGTTTGGGAATTTTTAAAATTTTTTCGGAA
196 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGAATTTTTAAAATTTTTTCGGAA
*
17059186 GGA-ATTTGGCCCCAAACCTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAGATT
261 GGAGTTTTGGCCCCAAACCTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAGATT
17059250 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTTAGACA
326 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTTAGACA
17059315 CTTTAATGGCAATTGGCGGCAAACCTGAAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
391 CTTTAATGGCAATTGGCGGCAAACCTGAAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
*
17059380 GAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCTATCGCACATCATGT
456 GAGGTTTGATGAAGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCTATCGCACATCATGT
17059445 GTGCACACCCCCCGGCCCAACCCGATTGTCGAAACCCCAATGCTGTCGGTCAGGTTTTCAGACGA
521 GTGCACACCCCCCGGCCCAACCCGATTGTCGAAACCCCAATGCTGTCGGTCAGGTTTTCAGACGA
17059510 TGCTCCGACGATAAAAATGCGGCACCAGCACATGCCCGAGCCACGCATGTGCTGCCGTAACCCTC
586 TGCTCCGACGATAAAAATGCGGCACCAGCACATGCCCGAGCCACGCATGTGCTGCCGTAACCCTC
*
17059575 GATTCGGTCCGATTTTAGACTGGGAATGAACTCCGTTTCCTCAGACTGGGAATGAAGTTCGTATG
651 GATTCGGTCCGATTTTAGACTGGGAATGAACTCCGTTTCCTCAGACTGGGAATGAACTTCGTATG
17059640 CCTAAGCCAAC
716 CCTAAGCCAAC
* * *
17059651 CGACGAAACGAGGGGGTGGGCGGGTGGGCAGGCACTACGCCGGCCAGAGAGAC-GAGATGCGCAA
1 CGACGAAACGA----GCGGGCGGGTGGGCGGGCACTACGCCCGCCAGAGAGACAG-GATGCGCAA
* * *
17059715 GCCGTGGATCGATAGGGTGGTTGGTGGGTTTAGGTACATCTTCATATTTCTGCGTGCCAATGCCA
61 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
17059780 TTTTTATGGCTTTTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
126 TTTTTATGGCATATAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
*
17059845 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTCCGGTTCGGG-ATCTTTTAAAATTTTT
191 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGAAT-TTTTAAAA-TTTT
* * * *
17059909 TTC-GAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCCCAA
254 TTCGGAAGGAGTTTTGGCCCCAAACCTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
* * * **
17059973 AAAAATTCAGCTAAAAACTCTAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTGATT
319 AAAGATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATT
* * * * * * *
17060038 TCAGACACATTAATGGCTACTGGCAGCAAACCTGTAAAATCACAAATGCTCTTTAAGGGGGTGTG
384 TTAGACACTTTAATGGCAATTGGCGGCAAACCTGAAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* ** * * *
17060103 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAACTGCCAAGTACCAGTACCCATCGCAT
449 AGTTCTCGAGGTTTGATGAAGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCTATCGCAC
* * ** *
17060168 ATTATGTGCGCACACCCCCCGGCCC--CCCGATCATCGGAACCCCAATG
514 ATCATGTGTGCACACCCCCCGGCCCAACCCGATTGTCGAAACCCCAATG
17060215 TTGCTAATCA
Statistics
Matches: 1206, Mismatches: 74, Indels: 19
0.93 0.06 0.01
Matches are distributed among these distances:
724 320 0.27
725 360 0.30
728 23 0.02
729 247 0.20
730 256 0.21
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (726 bp):
CGACGAAACGAGCGGGCGGGTGGGCGGGCACTACGCCCGCCAGAGAGACAGGATGCGCAAGCCGT
GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
ATGGCATATAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
GTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGAATTTTTAAAATTTTTTCGGAA
GGAGTTTTGGCCCCAAACCTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAGATT
CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTTAGACA
CTTTAATGGCAATTGGCGGCAAACCTGAAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
GAGGTTTGATGAAGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCTATCGCACATCATGT
GTGCACACCCCCCGGCCCAACCCGATTGTCGAAACCCCAATGCTGTCGGTCAGGTTTTCAGACGA
TGCTCCGACGATAAAAATGCGGCACCAGCACATGCCCGAGCCACGCATGTGCTGCCGTAACCCTC
GATTCGGTCCGATTTTAGACTGGGAATGAACTCCGTTTCCTCAGACTGGGAATGAACTTCGTATG
CCTAAGCCAAC
Found at i:17062469 original size:703 final size:700
Alignment explanation
Indices: 17060445--17062651 Score: 2990
Period size: 703 Copynumber: 3.1 Consensus size: 700
17060435 GCAACCATTA
* * *
17060445 GTCTGGTCCAATCCTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCAACGAAACGAGCGGG
1 GTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA-----
*
17060510 CGGGCGGGCGGACGGGCACTACGT-CGGCCAGAGAGACAGGATGCGCAAGCAGTGGATCGATAGG
61 ---GCGGGC--A--GGCACTAC-TCCGGCCAGAGAGACGGGATGCGCAAGC-GTGGATCGATAGG
* *
17060574 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAACCGCCATTTTTATGGCTTGTA
117 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA-TGCCATTTTTATGACTTGTA
** *
17060639 AATTCATACAATGGTCCCTTAAGCCTTCACGTGTTGTTTCATGGCAAGTCGACTCGTTTTCTATT
181 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
17060704 TTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTCAAAATTTTTTCGG-AAGAAGTTTTG
246 TTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTT-AAAATTTTTTCGGAAAG-AGTTTTG
* * *
17060768 GCCCCAAACTTTGAAGACGTGCTCCTTGTATTTTTGTTGGCATGCACAAAACAT-TTCAGCTAAA
309 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA-ATATTCAGCTAAA
* *
17060832 AACTCAAAGTGTACAAGATTTTGTGATCATTTGAAAAAAGTCTCCCCATTTCAGACACTTTAATG
373 AACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
*
17060897 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTTCGAGGTTTG
438 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
* * *
17060962 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTTCGTACAC
503 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA-
* * * *
17061027 CCCCCGGCTCCCCCGATCACTGGGACCGCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGAC
567 CCCCCGG--CCCCCGATCACCGGAACC-CAATGCCGCCGATCAGGTTCTCCGGCGATGCTCCGAC
* *
17061092 GATGCTCCGGTGATAGTGTCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGTAT
629 GA--------TG---GTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCAT
*
17061157 GTGCTGCCGCAACCCTCG
683 GTGCTACCGCAACCCTCG
* *
17061175 GTCTGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGATCGGG
1 GTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A-----
* * * *
17061240 CGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATCCGTAAGCCGTGGATCGATAGGGTGGT
58 CGAGCGGGCAGGCACTACTCCGGCCAGAGAGACGGGATGCGCAAG-CGTGGATCGATAGGGTGGT
**
17061305 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATTTCTTGTAAATTCA
122 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGACTTGTAAATTCA
17061370 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
187 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * * * * * *
17061435 GATTTTTAAAACTTTTTGCGGTTCAAGATTTTTTTAAATTTTTTTGGAAGGAATTTTGGCCCCAA
252 GATTTTTGAAACTTTTTACGGTTCGAGA-TTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAA
* * * * *
17061500 ACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAATCAACTAAAAAATCAAA
316 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAATATTCAGCTAAAAACTCAAA
17061565 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
381 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* * * *
17061630 CAGCAAAACTTTAAAATTTCAAATGTTCTTTAA--GGGTGTGAGTTCTCGAGGTTTGATGAGGGA
446 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* *
17061693 TAGGGGGCGAATATAAGGGCCAAGTACC-GACACCCAT-AGCACATCATGTGCGCACCCCCCCAG
511 TAGGGGGCCAATATAAGGGCCAAGTACCAG-CACCCATCA-CACATCATGTGCGCACACCCCC-G
* *
17061756 CCCTCCCGATCACCGGAACGCCAATGCCGCCGACCAGGTTCTCCGGCGATGCTCCGACGATGGTG
573 GCC-CCCGATCACCGGAAC-CCAATGCCGCCGATCAGGTTCTCCGGCGATGCTCCGACGATGGTG
* * *
17061821 CCCCGGTGAAGAAAAATACGGCACCAGCACATGCCTGAGCCCAGCATCTGCTACCGTAACCCTCG
636 CCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCG
* * *
17061886 GTCCGGTCCAATCTTAGGCTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGG
1 GTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
* * *
17061951 TAGGCACTACTCCGGCCAGAGAAACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTTGGTGGGT
66 CAGGCACTACTCCGGCCAGAGAGACGGGATGCGCAAG-CGTGGATCGATAGGGTGGTAGGTGGGT
* *
17062016 TTAGGCACATCTTCATATTTTTGCTTGCCAATGCCATTTTTATGACTTGTAAATTCATACAATGG
130 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGACTTGTAAATTCATACAATGG
* * *
17062081 TCCCCTAAGCCTTCACGTGAAGTTTTATGGCAAGACGACTCGTTTTCCATTTTTCACGATTTTTG
195 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * *
17062146 AAACTTTTTACGATTTGGGATCTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGGTA
260 AAACTTTTTACGGTTCGAGAT-TTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGGTA
* *
17062211 GACGTGATCCTTGTATTTTTGTTGGCATGCCCAAAAATATTCAGCTAAAAACTCTAAGTGTACAA
324 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAATATTCAGCTAAAAACTCAAAGTGTACAA
** *
17062276 GATTTTGTGACCATTTGAAAAAAGTGTCCTGATTTCAGACACATTAATGGCTACTGGCAGCAAAC
389 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
17062341 CTGTAAAATCACAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
454 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
** * * *
17062406 CAATATAACTGCCAAGTACCAGTACCCATCACATATTATGTGCGCACACCCCCGGCCCCCGATCA
519 CAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCGGCCCCCGATCA
* ** ** * * * * * *
17062471 TCGGAACCCCAATGTTGCTAATCAGGTTCTCCGGTGATGCTCTGGCAATTGTGCCCCGGCGAAGA
584 CCGGAA-CCCAATGCCGCCGATCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGTGAAGA
* *
17062536 AAAA-AGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAGCCCTCA
648 AAAATA-CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCG
** * * * *
17062589 GTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCG
1 GTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG
17062652 TACATCTCGG
Statistics
Matches: 1318, Mismatches: 134, Indels: 77
0.86 0.09 0.05
Matches are distributed among these distances:
702 2 0.00
703 540 0.41
704 4 0.00
705 80 0.06
706 2 0.00
708 1 0.00
710 2 0.00
711 111 0.08
714 2 0.00
721 2 0.00
722 55 0.04
723 79 0.06
724 1 0.00
725 281 0.21
726 94 0.07
727 1 0.00
730 55 0.04
731 2 0.00
733 1 0.00
738 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.27
Consensus pattern (700 bp):
GTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
CAGGCACTACTCCGGCCAGAGAGACGGGATGCGCAAGCGTGGATCGATAGGGTGGTAGGTGGGTT
TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGACTTGTAAATTCATACAATGGT
CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
AACTTTTTACGGTTCGAGATTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGGTAGA
CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAATATTCAGCTAAAAACTCAAAGTGTACAAGA
TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
ATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCGGCCCCCGATCACC
GGAACCCAATGCCGCCGATCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGTGAAGAAAA
ATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCG
Found at i:17063497 original size:4 final size:4
Alignment explanation
Indices: 17063490--17063516 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
17063480 AACGAAATGA
17063490 GCGG GCGG GCGG GCGG GCGG GCGG GCG
1 GCGG GCGG GCGG GCGG GCGG GCGG GCG
17063517 AGCACTACGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.00, C:0.26, G:0.74, T:0.00
Consensus pattern (4 bp):
GCGG
Found at i:17063928 original size:723 final size:727
Alignment explanation
Indices: 17062776--17064174 Score: 2214
Period size: 723 Copynumber: 1.9 Consensus size: 727
17062766 ACAAAATGAA
* *
17062776 GGGCGGGCGGGCGGACGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCAGTGGATCGATA
1 GGGCGGGCGGGCGGACGAGCACTACGCCGGCCAGAGAGACAGGATGCACAAGCAGTGGATCGATA
* * * * *
17062841 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAACCGCCATTTTTATGGCTTG
66 GGATGGTAGGTGGATTTAGGCACATCTCCATATTTCTACAAGCCAACCGCCATTTTTATGGCTTG
* ** *
17062906 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGTTGTTTCATGGCAAGTCGACTCGTTTTCTA
131 CAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
** * *
17062971 TTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTCAAAAATTTTTCGGAAGAAGTTTT
196 TTTTTCACGATTTTCAAAACTTTTTACGATTCGAGATTTTTCAAAAATTTTTCGGAAGAACTTTT
* * *
17063036 GGCCCCAAACTTTGAAGACGTGTTCCTTGTATTTTTGTTGGCATGCACAAAACAAATCAGCTAAA
261 GGCCCCAAACTTGGAAGACGTGATCCTTGTATTTTTGTTGGAATGCACAAAACAAATCAGCTAAA
*
17063101 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
326 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATA
**
17063166 GCTACTGGCAGCAAACCTTTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCAAGGTTTG
391 GCTACTGGCAGCAAACCTGCAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTG
* * *
17063230 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCGGCACCCATCGCACATCATGTG-CGCACC
456 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCCCACATCATGTGACCCACC
* * * * *
17063294 CCCCTCGGCTCCTCGATCACCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGT
521 CCCCTCGGCCCCCCGATCACCGAAACCCCAATGCCGCCGATCAGGTTCTCCGGCGATGCTCCGAT
* * *
17063359 GATGGTG-CCCGACGAAGAAAAATGCGGCACCAGCACATG-TCGAAGCCCAGTATGTGCTACCGT
586 GATGGTGCCCCGACGAAGAAAAATGAGGCACCAGCACATGCCCG-AGCCCAGCATGTGCTACCGT
* *
17063422 AACGCTTGGTCCGATCCGATCTTAGATAGGGAATGAATTCCGTATGCCTAAGCCAACCAACGAAA
650 AACCCTCGGTCCGATCCGATCTTAGATAGGGAATGAATTCCGTATGCCTAAGCCAACCAACGAAA
17063487 TGAGCGGGCGGGC
715 TGAGCGGGCGGGC
* * * *
17063500 GGGCGGGCGGGCGGGCGAGCACTACGCCGGCCAGAGAGACGGGATGCATAAGCCGTGGATCGATA
1 GGGCGGGCGGGCGGACGAGCACTACGCCGGCCAGAGAGACAGGATGCACAAGCAGTGGATCGATA
*
17063565 GGATGGTAGGTGGATTTAGGCACATCTCCATATTTCTACAAGCCAA-TGCCATTTTTATGGCTTG
66 GGATGGTAGGTGGATTTAGGCACATCTCCATATTTCTACAAGCCAACCGCCATTTTTATGGCTTG
17063629 CAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
131 CAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* * * * *
17063694 TTTTTCATGATTTTCAAAACTTTTTATGATTCGAGATTTTTTAAAATTTTTTCGGAAGGACTTTT
196 TTTTTCACGATTTTCAAAACTTTTTACGATTCGAGATTTTTCAAAAATTTTTCGGAAGAACTTTT
* * * *
17063759 TGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGAATGCACAAAACAAATCAGCTAAA
261 GGCCCCAAACTTGGAAGACGTGATCCTTGTATTTTTGTTGGAATGCACAAAACAAATCAGCTAAA
*
17063824 AACTCGAAGTGTACAAGGTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATA
326 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATA
*
17063889 GCTACTGGCAGCAAACCTGCAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
391 GCTACTGGCAGCAAACCTGCAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTG
*
17063954 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAGCAGCACCCATCCCACATCATGTGCACCCAC
456 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCCCACATCATGTG-ACCCAC
** * *
17064019 CCCCCTCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGGTGATGCTCCGA
520 CCCCCTCGGCCCCCCGATCACCGAAACCCCAATGCCGCCGATCAGGTTCTCCGGCGATGCTCCGA
* *
17064084 TGATGGTGCCCCGACGAAGAAAAATGAGGCACTAGCACATGCCCGAGCCCAGCATGTGCTACTGT
585 TGATGGTGCCCCGACGAAGAAAAATGAGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGT
* *
17064149 AACCCTCGGTCTGGTCCGATCTTAGA
650 AACCCTCGGTCCGATCCGATCTTAGA
17064175 CTGCAATGAA
Statistics
Matches: 611, Mismatches: 59, Indels: 7
0.90 0.09 0.01
Matches are distributed among these distances:
723 294 0.48
724 177 0.29
726 68 0.11
727 70 0.11
728 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (727 bp):
GGGCGGGCGGGCGGACGAGCACTACGCCGGCCAGAGAGACAGGATGCACAAGCAGTGGATCGATA
GGATGGTAGGTGGATTTAGGCACATCTCCATATTTCTACAAGCCAACCGCCATTTTTATGGCTTG
CAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
TTTTTCACGATTTTCAAAACTTTTTACGATTCGAGATTTTTCAAAAATTTTTCGGAAGAACTTTT
GGCCCCAAACTTGGAAGACGTGATCCTTGTATTTTTGTTGGAATGCACAAAACAAATCAGCTAAA
AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATA
GCTACTGGCAGCAAACCTGCAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTG
ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCCCACATCATGTGACCCACC
CCCCTCGGCCCCCCGATCACCGAAACCCCAATGCCGCCGATCAGGTTCTCCGGCGATGCTCCGAT
GATGGTGCCCCGACGAAGAAAAATGAGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTA
ACCCTCGGTCCGATCCGATCTTAGATAGGGAATGAATTCCGTATGCCTAAGCCAACCAACGAAAT
GAGCGGGCGGGC
Found at i:17064197 original size:25 final size:26
Alignment explanation
Indices: 17064169--17064218 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17064159 CTGGTCCGAT
17064169 CTTAGACT-GCAATGAACTCCGTATA
1 CTTAGACTGGCAATGAACTCCGTATA
*
17064194 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGCAATGAACTCCGTAT
17064219 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 8 0.35
26 15 0.65
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATA
Found at i:17064403 original size:26 final size:26
Alignment explanation
Indices: 17064352--17064404 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17064342 TTGGTCTGAT
* *
17064352 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17064378 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
17064404 C
1 C
17064405 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17064463 original size:184 final size:185
Alignment explanation
Indices: 17064141--17064563 Score: 534
Period size: 184 Copynumber: 2.3 Consensus size: 185
17064131 CCCAGCATGT
* * * * *
17064141 GCTACTGTAACCCTCGGTCTGGTCCGATCTTAGACT-GCAATGAACTCCGTATACTTAGACTGGG
1 GCTACCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGG
* *
17064205 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCAGGTGCTCAACCGGCCAAAGGG
66 AATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGCATGCAGGTGCTCAACCGGCCAAAGGG
*
17064270 GCAGGATGCGCAAGTCGAGGATCGATC-GAGACCCC-TCTGTGTGCTG-CTGATCCC
131 GCAGGATGCGCAAGCCGAGGATCGATCAG-GACCCCTTCTGTGTGCTGTC-GATCCC
** * *
17064324 GCTGTCGTAACCCTCGGTTTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGATTGGG
1 GCTACCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGG
* * * ** * *
17064389 AATGAACTCCATATGCCTAAGTCAACCCGCAAAACGAGCGTGCGGGTGCTCAGTCGGCTAGAGGG
66 AATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGCATGCAGGTGCTCAACCGGCCAAAGGG
* * * * * *
17064454 GCGGGATGCGCGAGCCGGGGATCGGTCAGGTCCCCTTCTGTGTGCTGTCGATCCT
131 GCAGGATGCGCAAGCCGAGGATCGATCAGGACCCCTTCTGTGTGCTGTCGATCCC
*
17064509 GCTACCGTAACCCTTGGTCTGGT-TCGATCTTAGACTGGGAATGAAC-TCTGTATGC
1 GCTACCGTAACCCTCGGTCTGGTCT-GATCTTAGACTGGGAATGAACTTC-GTATGC
17064564 CAAAGCCAAC
Statistics
Matches: 205, Mismatches: 29, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
183 31 0.15
184 110 0.54
185 63 0.31
186 1 0.00
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.24
Consensus pattern (185 bp):
GCTACCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGG
AATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGCATGCAGGTGCTCAACCGGCCAAAGGG
GCAGGATGCGCAAGCCGAGGATCGATCAGGACCCCTTCTGTGTGCTGTCGATCCC
Found at i:17065274 original size:26 final size:26
Alignment explanation
Indices: 17065245--17065297 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17065235 TCGGTCTGAT
*
17065245 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17065271 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17065297 C
1 C
17065298 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17066102 original size:900 final size:900
Alignment explanation
Indices: 17064349--17073267 Score: 11454
Period size: 900 Copynumber: 10.0 Consensus size: 900
17064339 GGTTTGGTCT
* *
17064349 GATCTTAGACTGGGAATGAACT-TCGTATGCTTAGATTGGGAATGAACTCCATATGCCTAAGTCA
1 GATCTTAGACTGGGAATGAACTCT-GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * * *
17064413 ACCCGCAAAACGAGCGTGCGGGTGCTCAGTCGGCTAGAGGGGCGGGATGCGCGAGCCGGGGATCG
65 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* * * * * *
17064478 GTCAGGTCCCCTTCTGTGTGCTGTCGATCCTGCTACCGTAACCCTTGGTCTGGT-TCGATCTTAG
130 ATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCTGGTCT-GATCTTAG
* * *
17064542 ACTGGGAATGAACTCTGTATGCCAAAGCCAACCAACG-AA--A-CGAGC--G-A-GCAGGCGGGC
194 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCAGGCAGGCGGGC
*
17064599 ACTACGCCGGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
259 ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* * ** * * *
17064664 CACATCTACATATTTTTGCATGCCATTGCCATTTTTGTGGCTTGTAAATTCATACGATGGTCCCT
324 CACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* *
17064729 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACCCGTTTTCTATTTTTCATGATTTTCAAAACT
389 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACT
* * * * ** *
17064794 TTTTATGGTTCGAGATTTTTTAAGATTTTTTTGGAAGGAGTTTCGGCTCCAAACAAGGCAGACGT
454 TTTTACGGTTCG-GATTTTTTAAAATTTTTTCGGAAGGAGTTT-GGCCCCAAACTTGGTAGACGT
* * * *
17064859 GATCCTTGTATTTTTGTTCGCATGCACAAAAAAA-TCAGCCAAAAACTCGAAGTGCACAACATTT
517 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* *
17064923 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTACTGGCTACTGGCAGCAAACCTGTA
582 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* *
17064988 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGAATAGGGGGCCAATA
647 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* *
17065053 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACACCCCCGGCCCCCC-ATCACT
712 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCGGCCCCCCGATCGCC
* * * ***
17065117 GAAACCCGAACGCCGTCGGTCAGGTTCTCCGACGATGCTCCGATAATGGTGCCCCGACGAAGAAA
776 GGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAA
* * * * * * *
17065182 AATGCAGCACCAGCACATGCCCGAGCCCAGAATGTGCTGTCGTAACCCTCGGTTCGGTCT
841 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCC
*
17065242 GATCTTAGACTGGGAATGAACTCTGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAA
1 GATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * *
17065307 CCCATGAAACGAGTGTGCGAGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAATCCGGGGATCGG
66 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA
* * * * * * *
17065372 TCGGGTCCTCCTCTGCATGCTGCCGATCCTGCTACTGCAACCCTCAGTTTGGTCTAAT-TTGAGA
131 TCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTT-AGA
* *
17065436 CTGGGAATGAACTCCGTATGCCTAAGCCAATCGAC-AAACGAGCGAGCGGGCAGGCAGGCGGACA
195 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCAGGCAGGCGGGCA
* * * *
17065500 CTACGTCTGCCAGAGAGACGGGATGCGCAAGCCATTGATCGATAGGGTGGTAGGTGGGTTTTAGG
260 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG-TTTAGG
**
17065565 CACATCTTCATATTTCTGCCTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
324 CACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
** *
17065630 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACA
389 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACT
* * *
17065695 TTTTGCAGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTGGCGCCAAACTTGGTAGACGTG
454 TTTTACGGTTC-GGATTTTTTAAAATTTTTTCGGAAGGAGTTTGGCCCCAAACTTGGTAGACGTG
* *
17065760 ATCCTTGTATTTTTTTTGGCATGCACAAAAACAA-TCAGCTAAAAACTCGAAGTGCACAAGATTT
518 ATCCTTGTATTTTTGTTGGCATGCACAAAAA-AATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* * *
17065824 TGTGACCATTTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGCCTACTGGCAGCAAACTTGT
582 TGTGACCA-TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * * *
17065889 AAAATCTCAAATGGTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGACGAGGAATAGGGGGCCAAT
646 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
*
17065954 ATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGC-C-CACGCCCCCGGCCCCCC-ATCGC
711 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCGGCCCCCCGATCGC
* **
17066016 CGGAACCCCAATGCCGTCGGTCAGGTTCTCTGACGATGCTCCGGTAATGGTGCCCCGACGAAGAA
775 CGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAA
* ** ** * * **
17066081 TAATGTAGCACCAGCACATGCCTAAGCCCAGAATGTGCTGCCGCAACCCTCAGTCCGATTT
840 AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCC
* * *
17066142 GATCTTAGACTGGGAATGAACTCTGTTTGCTTAGATTGGGAATGAACTCCGTATACCTAAGTCAA
1 GATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * *
17066207 CCCACGAAACGAGCGTGCGAGCACTCAGCCGGCCAGAGGGGCGGGATGCGCAATCTGGGGATCGG
66 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA
* * * ** * **
17066272 TCAGGTCCCCCTCTGCGTTCTGCCGATCCTGC-AGTTGCAACCCTCGGTTTGGTCTGATCGAAGA
131 TCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTA-CCGCAACCCTCGGTCTGGTCTGATCTTAGA
* * *
17066336 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGAGCGGGCGGGCGGGCA
195 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCAGGCAGGCGGGCA
* * * *
17066401 CTACGCCAGCCAGAGAGACGGGATGTGCAAGCCGTTGATCGATAGGG-GGTAGGTGGGTTGAGGC
260 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
**
17066465 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
325 ACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
17066530 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTT
390 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTT
* * *
17066595 TTTACAGTTCGAGACTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
455 TTTACGGTTCG-GATTTTTTAAAATTTTTTCGGAAGGAG-TTTGGCCCCAAACTTGGTAGACGTG
* * *
17066660 ATCCTTGTATTTTTTTTGGCATGCA-AAAAAATAATCAGCTAATAACTCGAAGTGTACAAGATTT
518 ATCCTTGTATTTTTGTTGGCATGCACAAAAAA-ATTCAGCTAAAAACTCGAAGTGTACAAGATTT
*
17066724 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTA
582 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* * *
17066789 AAATCTTAAATGCTCTTTAA-GGGGAGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCATTA
647 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* * * *
17066853 TAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGAGCACACCCCCTGGCACCCCCGATCGCT
712 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC-CCCCCGATCGCC
* * * * * ** * * * **
17066918 GGAACCCTAATGCTGCCAGTCAGATTCTCCGGTGATGCTCTGGCGATGGCGCCTCGGTGAAGAAA
776 GGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAA
* *** * * *
17066983 AATACGATGCCAGCACATGCCTGAGCCCAGTATGTGCTACCGCAACCCT---T--G----
841 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCC
*
17067034 G-TC-----C---G---G---TCTG-AT-CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAA
1 GATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * * * * *
17067082 CCCACAAAACGAGC-TAGCGGGCGCTCAGCTGGCCAGAAGGGCGAGATGTGAAAGCTGAGGATCG
66 CCCACGAAACGAGCGT-GCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* * **
17067146 ATCGGGTCCCCCTCTGCGTGCTATCGATCCTGCTACCGCAACCCTCAGTCCAGTCTGATCTTAGA
130 ATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGA
* * * *
17067211 CTGGGAATGAACTCCGTATGCCCAAGCCAACCGATGAAACGAGCG-G-GAG--GGCAGGCGAGCA
195 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCAGGCAGGCGGGCA
* ** * *
17067272 CTTCGTTGGCCAGAGAGACGGGATGCACAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGC
260 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
** * *
17067337 ACATCTTCATATTTCAATGTGCCAATGCCATTTTTATGGCTTGTAAATTCAAACAATGGTCTCTT
325 ACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* *
17067402 AAGCCTTCACGTGAAGTTTCATGGCAAGACGGCTCGCTTTCTATTTTTCACGATTTTCAAAACTT
390 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTT
* ** * *
17067467 TTTACGGTTTGGGATTTTTTTTAATTTTTTCGAAAGGAGTTTTGG--ACAAACTTGGTAGACGTG
455 TTTACGG-TTCGGATTTTTTAAAATTTTTTCGGAAGGAG-TTTGGCCCCAAACTTGGTAGACGTG
17067530 ATCCTTGT-TTTTTGTTGGCATGCACAAAAAAAATTCAGCTAAAAACTCGAA-TGTACAAGATTT
518 ATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* * *
17067593 TGTGACCATTTGAAAAAAGTGTCCCCATTTTCAGACAGTTTAATGGCTACTGGCAGTAAACCTAT
582 TGTGACCATTTGAAAAAAGTGTCCCCA-TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* *
17067658 AAATTCTCAAATGCTCTTTAATGGGGTGTGAGTTCTC-AGGTTTGATGAGGGATAGGGGGCCAAT
646 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
*
17067722 ATAAGGGCCAAGTACCAGCACCCATCGCACGTCATGTGCGCACACCCCCTCGGCCCCCCCGATCG
711 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CGG-CCCCCCGATCG
* * * * *
17067787 TCGGAACCCCAATGCTGCCAGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACAAAGA
774 CCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGA
* * * * * * *
17067852 AAAAAGTGACATCGGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAATCC
839 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCC
* **
17067914 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-GAAAATGAACTCCGTATGCCTAAGTCAA
1 GATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * *
17067978 CCCACGAAACGAGCGTGCGGGCACTCAACCGGCCAGAGGGGTGGCATGCACAAGCCGGGGATCGA
66 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA
* * ** * * * * * ** **
17068043 TCGGGTCCCCCTCTGTGTGTTGTCGATCCTATTCCCACAACCTTTGGCCCAGTCCAATCTTAGAC
131 TCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGAC
** * * * *
17068108 TGGGAATGAACTCTATATGCCTAAGCCAACCGACGAAATGAGCGAGCAGGCGGGCGGGCGGGCAC
196 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCAGGCAGGCGGGCAC
* * * * *
17068173 TACGTCGGCCAGAGAGACGAGATACGCAAGTCGGGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
261 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
*
17068238 CATCTTCATATTTCTGTGAGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
326 CATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
*
17068303 AGCCTTCACGTGAAGTTTCAGGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTT
391 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTT
* ** *
17068368 ATGTGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
456 TTACGGTTCG-GATTTTTTAAAATTTTTTCGGAAGGAG-TTTGGCCCCAAACTTGGTAGACGTGA
* * *
17068433 TCCATGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGA-TTTG
519 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
* *
17068497 TGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGTAAACCTGTAAA
584 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
*
17068562 ATCTCGAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
649 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* * * * * *
17068627 AGGGCTAAGTACCCA-CACCCATCGGACATCTTGTGCGCACACCCCCCAGCCTCCTCGATCGTCG
714 AGGGCCAAGTA-CCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC-CCCCGATCGCCG
* * * *
17068691 GAACCCCAATGCCGTCGGTCAGGTTCTCCGATGGTGCTCCAGCGATGGTGCCCCGATGAAGAAAA
777 GAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAA
* * * * * *
17068756 ATGCGACA-CAGCACATGGCCGAGCCTAGCATGTACTGCCGCAACCCTCGGTCTGGTCC
842 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCC
* * * *
17068814 AATCTTAGACTGGGAAAGAACTCTGTATGCTTAGACGGGGAATGAACTCTGTATGCCTAAGTCAA
1 GATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
** * * *
17068879 CTGACGAAACGAGCGTGCGGGCGCTCAGCCGGACAGAGGGGCGGGATGCGCAAGTCGGGGATCGG
66 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA
* ** ** * * * * * * * *
17068944 CCGCATCCCCCTCTATGTGCTGCCAATCCTGCTGCTGCAACCATTGGTCCGGTCTGATCTTAGAT
131 TCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGAC
* * * * *
17069009 TGGGAATGAACTCCATATGCCTAAGCCAATCGACGAAACGGGC-AGGCGGGCGGGCGGGCGGGCA
196 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGA-GCGGGCAGGCAGGCGGGCA
* * * * *
17069073 CTACGTCGACCAGAGAGTCGGGATGCGCAAACCGTGGATCGATAGGATGGTAGGTGGGTTTAGGC
260 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
*
17069138 ACATCTTCATATTTCTGTGTGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAATGGTCCCTT
325 ACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* **
17069203 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTT
390 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTT
* ** * * *
17069268 TTTACGGTACGAGATTTTTTAAAATTTTTTTAGAATGCATTTTGGCCCCAAACTTGGTAGACATG
455 TTTACGGTTCG-GATTTTTTAAAATTTTTTCGGAA-GGAGTTTGGCCCCAAACTTGGTAGACGTG
* * *
17069333 ATCCTTATATTTTTGTTGGCA--CACAAAAAAGCATTCATCGAAAAACT-GAAAGTGTACAAGAT
518 ATCCTTGTATTTTTGTTGGCATGCACAAAAAA--ATTCAGCTAAAAACTCG-AAGTGTACAAGAT
*
17069395 TTTGTGACCATTTGAAACAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
580 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
*
17069460 TAAAATCTCAAATGCTCTTTAAGGGGATGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
645 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
*
17069525 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCCGGCCCCCTCGATC
710 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCC-CGATC
* ** * * *
17069590 CCCAAAACCCCAATGTCGTCGGTCAGGTTCTCCGACGATGCTCGGGCGATGGTGCCCCAACGAAG
773 GCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAG
17069655 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCC
838 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCC
* * *
17069718 GATCCTAGACTGGGATTGAACTCTGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAA
1 GATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * ** * *
17069783 CCCACGAAACAAGCGTACGGGCGCTCAGCCGGCCAGA-ACGCGAGATGCGCAAGCTGGGGATCGA
66 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA
* * ** * * **
17069847 CCGGGTCCCCCTCTACGTGCTAACGATCCTGCTACCGCAACCCTCGATCTGATAGGATCTTAGAC
131 TCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGAC
* * * * * * * ** *
17069912 TGGGAATGAACTCCGTATGCCTGAGCCAACCGATGAAACAAGTGGGCGGACGGGTGGGCGGTCAC
196 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCAGGCAGGCGGGCAC
* * * *
17069977 TACGCCGACCAGATAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGCGTTTAGGCA
261 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* * *
17070042 CATCTTCATATTTCTGTGTTCCAATGCCATTTTTATGGCTTGCAAATTCATACAATGGCCCCTTA
326 CATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * * ** *
17070107 AGCCTTCACGTGGAGTTTCATGGTAAGGCGACTCGTTTTCTATTTTTCACGATTTTTGAAACGTT
391 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTT
* * * ** * *
17070172 TTACGGTTTGGGATTTTTTAAACTTTTTTTGGAAGGA-TTTTTCACCCAAAACATGGTAGATGTG
456 TTACGG-TTCGGATTTTTTAAAATTTTTTCGGAAGGAGTTTGGC-CCC-AAACTTGGTAGACGTG
* * *
17070236 ATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAACTAAAAACTCGAATTGTACAAGATTTT
518 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
* * *
17070301 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACGCTTTAATGGCCACTGGCAGCGAACCTGTAA
583 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
*
17070366 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGTCCAATAT
648 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* * *
17070431 AAGGGCCAAGTACCAGCACCCATCGGACATCATGAGCGCACA----CC--CCCCCCGATCGCGGG
713 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGG
* * * * **
17070490 AACCCTAATG-C--C-GTC-GGTTCTCCGACGATGTTTCGACGATGGTGCCCCGGTGAAGAAAAA
778 AACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAA
** * *
17070550 TTTGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCTGCAACCCTC-G---G-TCC
843 TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCC
*
17070603 GA---T---C---------A----G-AT-CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAA
1 GATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
** **
17070647 CCCACGAAACGAAAGTGTAGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA
66 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA
* * * * * *
17070712 TCGGGTCCCCCTCTGCGTGCTATCGATCCTGCTGCTGTAACTCTCGGTCCGGTCTGATCTTAGAC
131 TCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGAC
* * *
17070777 -GAGGAAT-AAGCTCCGTATGCCTAAGCCAACTGACG-AA--A-TGA----GC--G--GGTGGGC
196 TG-GGAATGAA-CTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCAGGCAGGCGGGC
*
17070828 ACTACGCCGGCCAGAGAGAAGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
259 ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* * *
17070893 CACATCTTTATATTTCTATGTGCCAATGCCATTTTTATGGCTTCTAAATTCATACAATGGTCCCT
324 CACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * * ** *
17070958 TAAGCCTTCACGTGAAGTTTCATCGCAAGATGACTTGTTTTCTATTTTTCACGATTTTTGAAACC
389 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACT
*
17071023 TTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
454 TTTTACGGTTC-GGATTTTTTAAAATTTTTTCGGAAGGAG-TTTGGCCCCAAACTTGGTAGACGT
* * * *
17071088 GATCCGTGTATATTTTTGTTGCCTTGCACAAAAAAATTCAACTAAAAACTCGAAGTGTACAAGAT
517 GATCC-T-TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
*
17071153 TTTGTGACCATTTGAAAAAAGTGTCCCTACTTT-AGACACTTTAATGGCTACTGGCAGCAAACCT
580 TTTGTGACCATTTGAAAAAAGTGTCCCCA-TTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* * *
17071217 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGCGAGATAGTGGGCCA
644 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* **
17071282 ATATAAGGCCCAAGTACCAGCACCCATCGCACATCATCAGCGCACACCCCCCCGGCCCCCCGATC
709 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCGATC
* ** ** * * * *
17071347 GCCAGAACCCCAATGCCACCGGTCAGGTTCTCCGGTGATACTCTGGTGATGGTGCCCCGACAAAG
773 GCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAG
* * *
17071412 AAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGATCCGATCC
838 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCC
* * * * *
17071475 GATCTTCGACTAGGAATGAACTCTGTATGCTTACACTGGGAATGGACTCCATATGCCTAAGTCAA
1 GATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
** * * *
17071540 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCTTGATGCGTAAGTC-GAGATCGA
66 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA
* * * * * * ** * *
17071604 TCGGTTCCCCCTCTGCGTGCTTTTGATCCTACTGCCGGAACCCTCATTTTGGTTTGATCTTAGAC
131 TCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGAC
* * * *
17071669 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACTAAATGAGCGGGCGGG-A-G--GGCAGGCAC
196 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCAGGCAGGCGGGCAC
* * *
17071730 AACGCCGACCAGAAAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
261 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
** *
17071795 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAACGGTCCCTTA
326 CATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * *
17071860 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTTTTTTTCACGATTTTCGAAACTCT
391 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTT
* ** * *
17071925 TTGCGGATTATGATTTTTTAAAATTTTTTCAGATGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
456 TTACGG-TTCGGATTTTTTAAAATTTTTTCGGAAGGAG-TTTGGCCCCAAACTTGGTAGACGTGA
* *
17071990 TCCTTGTATTTTTGTTGGCATGCACAAAAAGATTCAGCTAAAAACTTGAAGTGTACAAGATTTTG
519 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
* *
17072055 TGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAACAAACCTGTAAA
584 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* *
17072120 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTATT-ATGAGGGATAGGTGGCCAATAT
649 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT-TTGATGAGGGATAGGGGGCCAATAT
* * * *
17072184 AAGGGCCAAGTACCAGCGCCCATCGTACATCATGTGCGTAAAACCCCCTCGGCCCCCCGATCGCC
713 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG-CACACCCCC-CGGCCCCCCGATCGCC
* * * * * **
17072249 GGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGACGCTCTGGTGATGGTGCGCCGGTGAAGAAA
776 GGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAA
* * * * * *
17072314 AATGCGGCACCAGCACATTCTCGAGCTCAGCATGTGCTGTCGCATCCCCCGGTCCGATCC
841 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCC
*
17072374 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
1 GATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * *
17072439 CCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCTAGAGGGGCGGGATGCGCAACCCGGGGATCGG
66 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA
* ** * * * * * * *
17072504 CCAAGTCCCCCTCTACGTACTGTCGATCCTACTACCGCAACACTCAGTCTGGTTTGATCTTAGAT
131 TCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGAC
* * *
17072569 TGGGAATGAACTCCGTACGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC-GAG-AGGGTGGGC
196 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCAG-GCA-GGCGGGC
* *
17072632 ACTACACCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
259 ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
*
17072697 CACATCTTCATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
324 CACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* *
17072762 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCACGATTTTCAAAACT
389 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACT
* * * *
17072827 TTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTCGACCCAAACATGGTAGACGT
454 TTTTACGGTTC-GGATTTTTTAAAATTTTTTCGGAAGGAG-TTTGGCCCCAAACTTGGTAGACGT
* * *
17072892 AATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAATTGTACAAGATTT
517 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* *
17072957 TGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGTAGCAAACCTGTA
582 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* * *
17073022 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAAGTTCGATGAGGGATAGGGGGCCAGTA
647 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* *
17073087 TAAGGGCCAAGTACCAGCACCCATCGCATATCATGTGCGCACACCCCCTCCCGGCCCCCCCGATT
712 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCC-CCCGG-CCCCCCGATC
* * * *
17073152 ACCGGAACCCTAATGCCATCGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCCC-AGCGAA
773 GCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGA-CGAA
* *
17073216 GAAAAATGCGGCACCAGCACATGCCTGAGCCCAAGCATGTGCTGTCGCAACC
837 GAAAAATGCGGCACCAGCACATGCCCGAGCCC-AGCATGTGCTGCCGCAACC
17073268 TGTAGACACC
Statistics
Matches: 7043, Mismatches: 813, Indels: 326
0.86 0.10 0.04
Matches are distributed among these distances:
852 2 0.00
853 232 0.03
854 4 0.00
855 217 0.03
856 3 0.00
857 1 0.00
860 2 0.00
861 2 0.00
862 23 0.00
863 1 0.00
864 70 0.01
865 106 0.02
866 4 0.00
867 77 0.01
869 54 0.01
870 167 0.02
871 175 0.02
872 180 0.03
873 6 0.00
874 3 0.00
875 179 0.03
876 2 0.00
877 4 0.00
878 1 0.00
879 1 0.00
880 2 0.00
881 2 0.00
882 1 0.00
883 1 0.00
885 5 0.00
886 3 0.00
887 1 0.00
889 2 0.00
890 82 0.01
891 6 0.00
892 95 0.01
893 284 0.04
894 3 0.00
895 20 0.00
896 180 0.03
897 12 0.00
898 288 0.04
899 501 0.07
900 1207 0.17
901 976 0.14
902 472 0.07
903 664 0.09
904 594 0.08
905 15 0.00
906 93 0.01
907 18 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (900 bp):
GATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA
TCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGAC
TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCAGGCAGGCGGGCAC
TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
CATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTT
TTACGGTTCGGATTTTTTAAAATTTTTTCGGAAGGAGTTTGGCCCCAAACTTGGTAGACGTGATC
CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAAC
CCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGC
GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCC
Found at i:17068846 original size:26 final size:26
Alignment explanation
Indices: 17068817--17068869 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17068807 CTGGTCCAAT
*
17068817 CTTAGACTGGGAAAGAACTCTGTATG
1 CTTAGACGGGGAAAGAACTCTGTATG
*
17068843 CTTAGACGGGGAATGAACTCTGTATG
1 CTTAGACGGGGAAAGAACTCTGTATG
17068869 C
1 C
17068870 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACGGGGAAAGAACTCTGTATG
Found at i:17069763 original size:26 final size:26
Alignment explanation
Indices: 17069723--17069773 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17069713 GATCCGATCC
*
17069723 TAGACTGGGATTGAACTCTGTATGCT
1 TAGACTGGGAATGAACTCTGTATGCT
17069749 TAGACTGGGAATGAACTCTGTATGC
1 TAGACTGGGAATGAACTCTGTATGC
17069774 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.31
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCTGTATGCT
Found at i:17070871 original size:159 final size:159
Alignment explanation
Indices: 17070582--17070876 Score: 371
Period size: 159 Copynumber: 1.9 Consensus size: 159
17070572 GCCCAGCATG
*
17070582 TGCTGCTGCAACCCTCGGTCCGATCAGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAA
1 TGCTGCTGCAACCCTCGGTCCGATCAGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAA
* * * **
17070647 CCCACGAAACGAAAGTGTAGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA
66 CCCACGAAACGAAAGGGTAGGCACTCAGCCGGCCAGAGAGAAGGGATGCGCAAGCCGGGGATCGA
*
17070712 TCGGGTCCCCCTCTGCGTGCTATCGATCC
131 TAGGGTCCCCCTCTGCGTGCTATCGATCC
* * * * *
17070741 TGCTGCTGTAACTCTCGGTCCGGTCTGATCTTAGAC-GAGGAAT-AAGCTCCGTATGCCTAAGCC
1 TGCTGCTGCAACCCTCGGTCCGATCAGATCTTAGACTG-GGAATGAA-CTCCATATGCCTAAGCC
** * ** * *
17070804 AACTGACGAAATGAGCGGGTGGGCACT-ACGCCGGCCAGAGAGAAGGGATGCGCAAGCCGTGGAT
64 AACCCACGAAACGAAAGGGTAGGCACTCA-GCCGGCCAGAGAGAAGGGATGCGCAAGCCGGGGAT
17070868 CGATAGGGT
128 CGATAGGGT
17070877 GGTAGGTGGG
Statistics
Matches: 114, Mismatches: 19, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
158 4 0.04
159 110 0.96
ACGTcount: A:0.23, C:0.27, G:0.31, T:0.19
Consensus pattern (159 bp):
TGCTGCTGCAACCCTCGGTCCGATCAGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAA
CCCACGAAACGAAAGGGTAGGCACTCAGCCGGCCAGAGAGAAGGGATGCGCAAGCCGGGGATCGA
TAGGGTCCCCCTCTGCGTGCTATCGATCC
Found at i:17072406 original size:26 final size:26
Alignment explanation
Indices: 17072377--17072429 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17072367 CCGATCCGAT
17072377 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17072403 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17072429 C
1 C
17072430 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17072869 original size:904 final size:895
Alignment explanation
Indices: 17070611--17073267 Score: 3791
Period size: 904 Copynumber: 3.0 Consensus size: 895
17070601 CCGATCAGAT
** **
17070611 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAAAGTGTAGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
17070676 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTATCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATC-GGTCCCCCTCTGCGTGCTATCGATCC
* * * * * * * *
17070741 TGCTGCTGTAACTCTCGGTCCGGTCTGATCTTAGACGAGGAAT-AAGCTCCGTATGCCTAAGCCA
130 TACTGCCGCAACACTCAGTCTGGTTTGATCTTAGATG-GGAATGAA-CTCCGTATGCCTAAGCCA
* * *
17070805 ACTGACGAAATGA------GC---GGGTGGGCACTACGCCGGCCAGAGAGAAGGGATGCGCAAGC
193 ACCGACGAAATGAGCGGGCGCGGAGGGTGGGCACTACGCCGGCCAAAGAGACGGGATGCGCAAGC
* *
17070861 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTATGTGCCAATGCCATT
258 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATT
* * *
17070926 TTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATCGCAAGATGA
323 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * *
17070991 CTTGTTTTCTATTTTTCACGATTTTTGAAACCTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCG
388 CTCGTTTTTTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCG
* * * *
17071056 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCGTGTATATTTTTGTTGCCTTGCACAAAA
453 AAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC-T-TGTATTTTTGTTGGCATGCACAAAA
* *
17071121 AAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTACTTT
516 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTT
17071186 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
580 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
17071251 TTCTCGAGGTTTGATGCGAGATA-GTGGGCCAATATAAGGCCCAAGTACCAGCACCCATCGCACA
645 TTCTCGAGGTTT-ATGAGGGATAGGT-GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
** * *
17071315 TCATCAGCGCACACCCCCCCGGCCCCCCGATCGCCAGAACCCCAATGCCACCGGTCAGGTTCTCC
708 TCATGTGCGCACACCCCCTCGGCCCCCCGATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTCC
** * * * *
17071380 GGTGATACTCTGGTGATGGTGCCCCGACAAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAG
773 GACGATGCTCTGGTGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATG-CCGAGCCCAG
* * *
17071445 CATGTGCTGTCGCAACCCTCGATCCGATCCGATCTTCGACTAGGAATGAACTCTGTATG
837 CATGTGCTGTCGCAACCCCCGATCCGATCCGATCTTAGACTAGGAATGAACTCCGTATG
* *
17071504 CTTACACTGGGAATGGACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * * * *
17071569 CGGCCAGAGGGGCTTGATGCGTAAGTC-GAGATCGATCGGTTCCCCCTCTGCGTGCTTTTGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGG-TCCCCCTCTGCGTGCTATCGATCC
* * * *
17071633 TACTGCCGGAACCCTCATTTTGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
130 TACTGCCGCAACACTCAGTCTGGTTTGATCTTAGA-TGGGAATGAACTCCGTATGCCTAAGCCAA
* ** * *
17071698 CCGACTAAATGAGCGGGCG-GGAGGGCAGGCACAACGCCGACCAGAA-AGACGGGATGCGCAAGC
194 CCGACGAAATGAGCGGGCGCGGAGGGTGGGCACTACGCCGGCCA-AAGAGACGGGATGCGCAAGC
**
17071761 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
258 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATT
*
17071826 TTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
323 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* **
17071891 CTCGTTTTCTT-TTTTTCACGATTTTCGAAACTCTTTGCGGATT-ATGATTTTTTAAAATTTTTT
388 CTCGTTTT-TTATTTTTCACGATTTTCGAAACTTTTTGCGG-TTCGGGATTTTTTAAAATTTTTT
*
17071954 C-AGATGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
451 CGA-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
17072018 AAGATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
515 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
17072083 CAAACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
580 -AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
17072148 GTTCTTGAGGTATTATGAGGGATAGGTGGCCAATATAAGGGCCAAGTACCAGCGCCCATCGTACA
644 GTTCTCGAGGT-TTATGAGGGATAGGTGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * *
17072213 TCATGTGCGTAAAACCCCCTCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTC
708 TCATGTGCG-CACACCCCCTCGGCCCCCCGATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTC
* * * * *
17072278 CGACGACGCTCTGGTGATGGTGCGCCGGTGAAGAAAAATGCGGCACCAGCACATTCTCGAGCTCA
772 CGACGATGCTCTGGTGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGC-CGAGCCCA
* * *
17072343 GCATGTGCTGTCGCATCCCCCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
836 GCATGTGCTGTCGCAACCCCCGATCCGATCCGATCTTAGACTAGGAATGAACTCCGTATG
* *
17072403 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** * * * *
17072468 CGGCTAGAGGGGCGGGATGCGCAACCCGGGGATCGGCCAAGTCCCCCTCTACGTACTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATC-GGTCCCCCTCTGCGTGCTATCGATCC
* *
17072533 TACTACCGCAACACTCAGTCTGGTTTGATCTTAGATTGGGAATGAACTCCGTACGCCTAAGCCAA
130 TACTGCCGCAACACTCAGTCTGGTTTGATCTTAGA-TGGGAATGAACTCCGTATGCCTAAGCCAA
* *
17072598 CCGACGAAACGAGCGGGCGGGCGAGAGGGTGGGCACTACACCGGCCAAAGAGACGGGATGCGCAA
194 CCGACGAAATGAGCGGGC--GCG-GAGGGTGGGCACTACGCCGGCCAAAGAGACGGGATGCGCAA
*
17072663 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGTGTGCCAATGCCA
256 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCA
17072728 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
321 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
17072793 GACTCATTTTTTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
386 GACTCGTTTTTTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
* * * * *
17072858 CGAAAGGAGTTTTCGACCCAAACATGGTAGACGTAATCCTTGTATTTTTGTTGGCATGCAAAAAA
451 CGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
*
17072923 AAATTCAGCTAAAAACTCGAATTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTT
516 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTT
*
17072988 AGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
580 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * * * *
17073053 TTCTCGAAGTTCGATGAGGGATAGGGGGCCAGTATAAGGGCCAAGTACCAGCACCCATCGCATAT
645 TTCTCGAGGTT-TATGAGGGATAGGTGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
** * *
17073118 CATGTGCGCACACCCCCTCCCGGCCCCCCCGATTACCGGAACCCTAATGCCATCGGTCAGGTTCT
709 CATGTGCGCACACCCCCT--CGG-CCCCCCGATCGCCGGAACCCCAATGCCACCGGTCAGGTTCT
* *
17073183 CCGACGATGCTCCGGTGATGGTGCCCCAGCGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCC
771 CCGACGATGCTCTGGTGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCC-GAGCCC
17073248 AAGCATGTGCTGTCGCAACC
835 -AGCATGTGCTGTCGCAACC
17073268 TGTAGACACC
Statistics
Matches: 1562, Mismatches: 164, Indels: 62
0.87 0.09 0.03
Matches are distributed among these distances:
891 2 0.00
892 91 0.06
893 85 0.05
897 3 0.00
898 203 0.13
899 243 0.16
900 343 0.22
901 5 0.00
902 1 0.00
903 16 0.01
904 452 0.29
905 8 0.01
906 92 0.06
907 18 0.01
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (895 bp):
CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGTCCCCCTCTGCGTGCTATCGATCCT
ACTGCCGCAACACTCAGTCTGGTTTGATCTTAGATGGGAATGAACTCCGTATGCCTAAGCCAACC
GACGAAATGAGCGGGCGCGGAGGGTGGGCACTACGCCGGCCAAAGAGACGGGATGCGCAAGCCGT
GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTT
ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
GTTTTTTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAA
GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAGACAC
TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
AGGTTTATGAGGGATAGGTGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
GCACACCCCCTCGGCCCCCCGATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTCCGACGATGC
TCTGGTGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCGAGCCCAGCATGTGCTG
TCGCAACCCCCGATCCGATCCGATCTTAGACTAGGAATGAACTCCGTATG
Found at i:17074026 original size:22 final size:22
Alignment explanation
Indices: 17073996--17074038 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
17073986 CCAGAAACCA
* *
17073996 GTGATCTTCCGGCGAACTTTCG
1 GTGAACTTCCGGCGAAATTTCG
*
17074018 GTGAACTTCCGGTGAAATTTC
1 GTGAACTTCCGGCGAAATTTC
17074039 CAGAATCTGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.19, C:0.23, G:0.26, T:0.33
Consensus pattern (22 bp):
GTGAACTTCCGGCGAAATTTCG
Found at i:17074451 original size:17 final size:18
Alignment explanation
Indices: 17074431--17074495 Score: 57
Period size: 17 Copynumber: 3.8 Consensus size: 18
17074421 CTTTATCTTA
17074431 TTTTTATTT-TGTTTTAC
1 TTTTTATTTATGTTTTAC
* *
17074448 TTTTTCTTTATTTTTTA-
1 TTTTTATTTATGTTTTAC
* *
17074465 TCTTTATTTAT-TTTCAC
1 TTTTTATTTATGTTTTAC
*
17074482 TTTTAATTT-TGTTT
1 TTTTTATTTATGTTT
17074496 ATATTCTTTA
Statistics
Matches: 38, Mismatches: 7, Indels: 6
0.75 0.14 0.12
Matches are distributed among these distances:
16 5 0.13
17 27 0.71
18 6 0.16
ACGTcount: A:0.14, C:0.08, G:0.03, T:0.75
Consensus pattern (18 bp):
TTTTTATTTATGTTTTAC
Found at i:17074587 original size:59 final size:58
Alignment explanation
Indices: 17074515--17074787 Score: 369
Period size: 59 Copynumber: 4.7 Consensus size: 58
17074505 AAATAAAATC
*
17074515 AAAAAAATATTTTTGAGGAAAAATTTGAAAGTATCAA-TTTCCTTAGAAATAAATTTTTCA
1 AAAAAAAT-TTTTTGAGG-AAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAA-TTTTCA
*
17074575 AAAAATATTTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCTTA-AAATAAAATTTTCA
1 AAAAAAATTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAT-AAATTTTCA
* *
17074632 AAAAAAGGA-TTTTTGAGGAAAAGTTGAAA-TATCAATTTTCCTTGGAAATCAAAGTTTCA
1 AAAAAA--ATTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAT-AAATTTTCA
* *
17074691 AAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTAGAAATAAATTTTCA
1 AAAAAAAT-TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTTCA
17074750 AAAAAAATTTTTT-AGGTAAAAGTTGAAAGTATCAATTT
1 AAAAAAATTTTTTGAGG-AAAAGTTGAAAGTATCAATTT
17074788 CCCTACACAA
Statistics
Matches: 192, Mismatches: 11, Indels: 22
0.85 0.05 0.10
Matches are distributed among these distances:
57 35 0.18
58 59 0.31
59 73 0.38
60 25 0.13
ACGTcount: A:0.45, C:0.06, G:0.12, T:0.36
Consensus pattern (58 bp):
AAAAAAATTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTTCA
Found at i:17074727 original size:118 final size:116
Alignment explanation
Indices: 17074513--17074787 Score: 380
Period size: 116 Copynumber: 2.4 Consensus size: 116
17074503 TTAAATAAAA
* *
17074513 TCAAAAAAATATTTTTGAGGAAAAATTTGAAAGTATCAA-TTTCCTTAGAAATAAATTTTTCAAA
1 TCAAAAAAA-ATTTTTGAGGAAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATGTTTCAAA
* *
17074577 AAATATTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTA-AAATAAAATTT
65 AAAAATTTTTTGGAAAAAGTTGAAAGTATCAATTTTCCTTAGAAAT-AAATTT
*
17074629 TCAAAAAAAGGATTTTTGAGG-AAAAGTTGAAA-TATCAATTTTCCTTGGAAATCAAA-GTTTCA
1 TCAAAAAAA--ATTTTTGAGGAAAAAGTTGAAAGTATCAATTTTCCTTAGAAAT-AAATGTTTCA
*
17074691 AAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTAGAAATAAATTT
63 AAAAAAAT-TTTTTG-GAAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTT
* *
17074747 TCAAAAAAAATTTTTTAGGTAAAAGTTGAAAGTATCAATTT
1 TCAAAAAAAATTTTTGAGGAAAAAGTTGAAAGTATCAATTT
17074788 CCCTACACAA
Statistics
Matches: 143, Mismatches: 8, Indels: 14
0.87 0.05 0.08
Matches are distributed among these distances:
115 6 0.04
116 52 0.36
117 30 0.21
118 51 0.36
119 4 0.03
ACGTcount: A:0.45, C:0.07, G:0.12, T:0.36
Consensus pattern (116 bp):
TCAAAAAAAATTTTTGAGGAAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATGTTTCAAAA
AAAATTTTTTGGAAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTT
Found at i:17080310 original size:14 final size:15
Alignment explanation
Indices: 17080291--17080325 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
17080281 AGAAATGCTA
17080291 GAGAAGGCT-AGAAG
1 GAGAAGGCTAAGAAG
17080305 GAGAAGGCTAAAGAAG
1 GAGAAGGCT-AAGAAG
17080321 GAGAA
1 GAGAA
17080326 AGATGAAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 9 0.47
16 10 0.53
ACGTcount: A:0.49, C:0.06, G:0.40, T:0.06
Consensus pattern (15 bp):
GAGAAGGCTAAGAAG
Found at i:17087745 original size:8 final size:8
Alignment explanation
Indices: 17087732--17087802 Score: 72
Period size: 8 Copynumber: 8.6 Consensus size: 8
17087722 CTATGCTTGA
17087732 AAAAAATG
1 AAAAAATG
*
17087740 AAAAAATT
1 AAAAAATG
*
17087748 AAAAAATAA
1 AAAAAAT-G
*
17087757 AAAAAATT
1 AAAAAATG
*
17087765 AAAAAATTA
1 AAAAAA-TG
17087774 AAACAAATG
1 AAA-AAATG
17087783 AAAAAATG
1 AAAAAATG
17087791 AAAAAA-G
1 AAAAAATG
17087798 AAAAA
1 AAAAA
17087803 GCAAAAAAGG
Statistics
Matches: 55, Mismatches: 5, Indels: 7
0.82 0.07 0.10
Matches are distributed among these distances:
7 6 0.11
8 31 0.56
9 15 0.27
10 3 0.05
ACGTcount: A:0.79, C:0.01, G:0.06, T:0.14
Consensus pattern (8 bp):
AAAAAATG
Found at i:17087751 original size:17 final size:17
Alignment explanation
Indices: 17087729--17087796 Score: 73
Period size: 17 Copynumber: 3.9 Consensus size: 17
17087719 ATACTATGCT
* *
17087729 TGAAAAAAATGAAAAAA
1 TGAAAAAATTAAAAAAA
* *
17087746 TTAAAAAATAAAAAAAA
1 TGAAAAAATTAAAAAAA
*
17087763 TTAAAAAATTAAAACAAA
1 TGAAAAAATTAAAA-AAA
*
17087781 TGAAAAAATGAAAAAA
1 TGAAAAAATTAAAAAA
17087797 GAAAAAGCAA
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
17 28 0.65
18 15 0.35
ACGTcount: A:0.76, C:0.01, G:0.06, T:0.16
Consensus pattern (17 bp):
TGAAAAAATTAAAAAAA
Found at i:17087752 original size:18 final size:18
Alignment explanation
Indices: 17087740--17087796 Score: 80
Period size: 18 Copynumber: 3.2 Consensus size: 18
17087730 GAAAAAAATG
17087740 AAAAAATTAAAAAA-TAA
1 AAAAAATTAAAAAATTAA
17087757 AAAAAATTAAAAAATTAA
1 AAAAAATTAAAAAATTAA
* * *
17087775 AACAAATGAAAAAATGAA
1 AAAAAATTAAAAAATTAA
17087793 AAAA
1 AAAA
17087797 GAAAAAGCAA
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
17 14 0.40
18 21 0.60
ACGTcount: A:0.79, C:0.02, G:0.04, T:0.16
Consensus pattern (18 bp):
AAAAAATTAAAAAATTAA
Found at i:17087801 original size:25 final size:25
Alignment explanation
Indices: 17087733--17087796 Score: 85
Period size: 25 Copynumber: 2.5 Consensus size: 25
17087723 TATGCTTGAA
17087733 AAAAATGAAAAAATTAAAAAATAAA
1 AAAAATGAAAAAATTAAAAAATAAA
* *
17087758 AAAAATTAAAAAATTAAAACAA-ATGA
1 AAAAATGAAAAAATTAAAA-AATA-AA
17087784 AAAAATGAAAAAA
1 AAAAATGAAAAAA
17087797 GAAAAAGCAA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
25 19 0.56
26 15 0.44
ACGTcount: A:0.78, C:0.02, G:0.05, T:0.16
Consensus pattern (25 bp):
AAAAATGAAAAAATTAAAAAATAAA
Found at i:17088857 original size:42 final size:42
Alignment explanation
Indices: 17088811--17089139 Score: 520
Period size: 42 Copynumber: 7.9 Consensus size: 42
17088801 ATGATTGCCA
17088811 AGGAGCAATTTAATTTTTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTAATTTTTCAAAGTCGTGGTGCCTCTGTTTAG
* *
17088853 AGGAGCAATTT-ACTTTTCAAAGTCGTGGTACCTCTGTTTAG
1 AGGAGCAATTTAATTTTTCAAAGTCGTGGTGCCTCTGTTTAG
*
17088894 AGGAGCAATTTACTTTTTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTAATTTTTCAAAGTCGTGGTGCCTCTGTTTAG
* *
17088936 AGGAGCAATTT-ACTTTCCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTAATTTTTCAAAGTCGTGGTGCCTCTGTTTAG
* * *
17088977 AGGAGCAATTTACTTTTCCAAAGTCGTGGTACCTCTGTTTAG
1 AGGAGCAATTTAATTTTTCAAAGTCGTGGTGCCTCTGTTTAG
* * *
17089019 AAGAGCAATTT-ATTTTTCCAAAGTCATGGTGCCTCTATTTAG
1 AGGAGCAATTTAATTTTT-CAAAGTCGTGGTGCCTCTGTTTAG
*
17089061 AGGAGCAATTTAATTTTTTAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTAATTTTTCAAAGTCGTGGTGCCTCTGTTTAG
17089103 AGGAGCAATTTAATTTTTCAAAGTCGTGGTGCCTCTG
1 AGGAGCAATTTAATTTTTCAAAGTCGTGGTGCCTCTG
17089140 AGTCGTGGTG
Statistics
Matches: 261, Mismatches: 22, Indels: 8
0.90 0.08 0.03
Matches are distributed among these distances:
41 81 0.31
42 174 0.67
43 6 0.02
ACGTcount: A:0.24, C:0.16, G:0.22, T:0.37
Consensus pattern (42 bp):
AGGAGCAATTTAATTTTTCAAAGTCGTGGTGCCTCTGTTTAG
Found at i:17088904 original size:83 final size:83
Alignment explanation
Indices: 17088811--17089139 Score: 532
Period size: 83 Copynumber: 3.9 Consensus size: 83
17088801 ATGATTGCCA
17088811 AGGAGCAATTTAATTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGT
1 AGGAGCAATTTAATTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGT
*
17088876 CGTGGTACCTCTGTTTAG
66 CGTGGTGCCTCTGTTTAG
* *
17088894 AGGAGCAATTTACTTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGT
1 AGGAGCAATTTAATTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGT
17088959 CGTGGTGCCTCTGTTTAG
66 CGTGGTGCCTCTGTTTAG
* * * * *
17088977 AGGAGCAATTTACTTTTCCAAAGTCGTGGTACCTCTGTTTAGAAGAGCAATTTATTTTTCCAAAG
1 AGGAGCAATTTAATTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTT-CAAAG
* *
17089042 TCATGGTGCCTCTATTTAG
65 TCGTGGTGCCTCTGTTTAG
* *
17089061 AGGAGCAATTTAATTTTTTAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTAATTTTTCAAAG
1 AGGAGCAATTTAATTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTT-ACTTTTCAAAG
17089126 TCGTGGTGCCTCTG
65 TCGTGGTGCCTCTG
17089140 AGTCGTGGTG
Statistics
Matches: 227, Mismatches: 17, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
83 134 0.59
84 87 0.38
85 6 0.03
ACGTcount: A:0.24, C:0.16, G:0.22, T:0.37
Consensus pattern (83 bp):
AGGAGCAATTTAATTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGT
CGTGGTGCCTCTGTTTAG
Found at i:17089145 original size:16 final size:16
Alignment explanation
Indices: 17089124--17089155 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
17089114 AATTTTTCAA
17089124 AGTCGTGGTGCCTCTG
1 AGTCGTGGTGCCTCTG
17089140 AGTCGTGGTGCCTCTG
1 AGTCGTGGTGCCTCTG
17089156 TTTAGAGGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.06, C:0.25, G:0.38, T:0.31
Consensus pattern (16 bp):
AGTCGTGGTGCCTCTG
Found at i:17089152 original size:58 final size:57
Alignment explanation
Indices: 17089082--17089196 Score: 221
Period size: 58 Copynumber: 2.0 Consensus size: 57
17089072 AATTTTTTAA
17089082 AGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTAATTTTTCAAAGTCGTGGTGCCTCTG
1 AGTCGTGGTGCCTCTGTTTAGAGGAGCAATTT-ATTTTTCAAAGTCGTGGTGCCTCTG
17089140 AGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTG
1 AGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTG
17089197 TTTAGAGGAG
Statistics
Matches: 57, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
57 25 0.44
58 32 0.56
ACGTcount: A:0.18, C:0.17, G:0.28, T:0.37
Consensus pattern (57 bp):
AGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTG
Found at i:17089219 original size:99 final size:100
Alignment explanation
Indices: 17089040--17089238 Score: 346
Period size: 99 Copynumber: 2.0 Consensus size: 100
17089030 ATTTTTCCAA
*
17089040 AGTCATGGTGCCTCTATTTAGAGGAGCAATTTAATTTTTTAAAGTCGTGGTGCCTCTGTTTAGAG
1 AGTCATGGTGCCTCTATTTAGAGGAGCAATTTAATTTTTCAAAGTCGTGGTGCCTCTGTTTAGAG
*
17089105 GAGCAATTTAATTTTTCAAAGTCGTGGTGCCTCTG
66 GAGCAATTTAATTTTTCAAAATCGTGGTGCCTCTG
* *
17089140 AGTCGTGGTGCCTCTGTTTAGAGGAGCAATTT-ATTTTTCAAAGTCGTGGTGCCTCTGTTTAGAG
1 AGTCATGGTGCCTCTATTTAGAGGAGCAATTTAATTTTTCAAAGTCGTGGTGCCTCTGTTTAGAG
*
17089204 GAGCAATTTACTTTTTCAAAATCGTGGTGCCTCTG
66 GAGCAATTTAATTTTTCAAAATCGTGGTGCCTCTG
17089239 TTTAGAGGAG
Statistics
Matches: 94, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
99 64 0.68
100 30 0.32
ACGTcount: A:0.22, C:0.16, G:0.25, T:0.38
Consensus pattern (100 bp):
AGTCATGGTGCCTCTATTTAGAGGAGCAATTTAATTTTTCAAAGTCGTGGTGCCTCTGTTTAGAG
GAGCAATTTAATTTTTCAAAATCGTGGTGCCTCTG
Done.