Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 93 of 195
Found at i:17089232 original size:42 final size:42
Alignment explanation
Indices: 17089140--17089332 Score: 327
Period size: 42 Copynumber: 4.6 Consensus size: 42
17089130 GGTGCCTCTG
17089140 AGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTA-TTTTTCAA
1 AGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTTCAA
17089181 AGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTTCAA
1 AGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTTCAA
*
17089223 AATCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTTCAA
1 AGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTTCAA
* *
17089265 AGTCGTGGTGCCCCTATTTAGAGGAGCAATTTAC-TTTTCAA
1 AGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTTCAA
* *
17089306 AGTCGTTGAGCCTCTGTTTAGAGGAGC
1 AGTCGTGGTGCCTCTGTTTAGAGGAGC
17089333 TTTAGTCAAA
Statistics
Matches: 143, Mismatches: 8, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
41 63 0.44
42 80 0.56
ACGTcount: A:0.22, C:0.17, G:0.24, T:0.36
Consensus pattern (42 bp):
AGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTTCAA
Found at i:17089253 original size:141 final size:142
Alignment explanation
Indices: 17088998--17089276 Score: 479
Period size: 141 Copynumber: 2.0 Consensus size: 142
17088988 ACTTTTCCAA
17088998 AGTCGTGGTACCTCTGTTTAGAAGAGCAATTTATTTTTCCAAAGTCATGGTGCCTCTATTTAGAG
1 AGTCGTGGTACCTCTGTTTAGAAGAGCAATTTATTTTTCCAAAGTCATGGTGCCTCTATTTAGAG
* *
17089063 GAGCAATTTAATTTTTTAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTAATTTTTCAAAGTC
66 GAGCAATTTAATTTTTCAAAATCGTGGTGCCTCTGTTTAGAGGAGCAATTTAATTTTTCAAAGTC
17089128 GTGGTGCCTCTG
131 GTGGTGCCTCTG
* * * *
17089140 AGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTT-CAAAGTCGTGGTGCCTCTGTTTAGAG
1 AGTCGTGGTACCTCTGTTTAGAAGAGCAATTTATTTTTCCAAAGTCATGGTGCCTCTATTTAGAG
* *
17089204 GAGCAATTTACTTTTTCAAAATCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTTCAAAGTC
66 GAGCAATTTAATTTTTCAAAATCGTGGTGCCTCTGTTTAGAGGAGCAATTTAATTTTTCAAAGTC
17089269 GTGGTGCC
131 GTGGTGCC
17089277 CCTATTTAGA
Statistics
Matches: 129, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
141 93 0.72
142 36 0.28
ACGTcount: A:0.23, C:0.16, G:0.24, T:0.38
Consensus pattern (142 bp):
AGTCGTGGTACCTCTGTTTAGAAGAGCAATTTATTTTTCCAAAGTCATGGTGCCTCTATTTAGAG
GAGCAATTTAATTTTTCAAAATCGTGGTGCCTCTGTTTAGAGGAGCAATTTAATTTTTCAAAGTC
GTGGTGCCTCTG
Found at i:17089303 original size:83 final size:83
Alignment explanation
Indices: 17089142--17089332 Score: 321
Period size: 83 Copynumber: 2.3 Consensus size: 83
17089132 TGCCTCTGAG
* *
17089142 TCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAG
1 TCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTCGTGGTGCCCCTATTTAGAGGAG
17089207 CAATTTACTTTTTCAAAA
66 CAATTTACTTTTTCAAAA
17089225 TCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTTCAAAGTCGTGGTGCCCCTATTTAGAGGA
1 TCGTGGTGCCTCTGTTTAGAGGAGCAATTTA-TTTTTCAAAGTCGTGGTGCCCCTATTTAGAGGA
*
17089290 GCAATTTAC-TTTTCAAAG
65 GCAATTTACTTTTTCAAAA
* *
17089308 TCGTTGAGCCTCTGTTTAGAGGAGC
1 TCGTGGTGCCTCTGTTTAGAGGAGC
17089333 TTTAGTCAAA
Statistics
Matches: 102, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
83 62 0.61
84 40 0.39
ACGTcount: A:0.22, C:0.17, G:0.24, T:0.37
Consensus pattern (83 bp):
TCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTCGTGGTGCCCCTATTTAGAGGAG
CAATTTACTTTTTCAAAA
Found at i:17089352 original size:8 final size:8
Alignment explanation
Indices: 17089339--17089398 Score: 56
Period size: 8 Copynumber: 7.9 Consensus size: 8
17089329 GAGCTTTAGT
*
17089339 CAAAAACA
1 CAAAAAAA
17089347 CAAAAAAA
1 CAAAAAAA
17089355 CAAAAAAA
1 CAAAAAAA
17089363 -AACAAAAA
1 CAA-AAAAA
*
17089371 -AATAAAA
1 CAAAAAAA
*
17089378 -AAAAATA
1 CAAAAAAA
17089385 C-AAAAAA
1 CAAAAAAA
17089392 CAAAAAA
1 CAAAAAA
17089399 TGATAATGTT
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
7 17 0.39
8 27 0.61
ACGTcount: A:0.85, C:0.12, G:0.00, T:0.03
Consensus pattern (8 bp):
CAAAAAAA
Found at i:17089355 original size:10 final size:10
Alignment explanation
Indices: 17089340--17089391 Score: 63
Period size: 10 Copynumber: 5.4 Consensus size: 10
17089330 AGCTTTAGTC
17089340 AAAAACACAA
1 AAAAACACAA
17089350 AAAAACA-AA
1 AAAAACACAA
17089359 AAAAA-ACAA
1 AAAAACACAA
* *
17089368 AAAAATAAAA
1 AAAAACACAA
*
17089378 AAAAATACAA
1 AAAAACACAA
17089388 AAAA
1 AAAA
17089392 CAAAAAATGA
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
8 1 0.03
9 14 0.37
10 23 0.61
ACGTcount: A:0.87, C:0.10, G:0.00, T:0.04
Consensus pattern (10 bp):
AAAAACACAA
Found at i:17089365 original size:20 final size:19
Alignment explanation
Indices: 17089340--17089398 Score: 77
Period size: 19 Copynumber: 3.2 Consensus size: 19
17089330 AGCTTTAGTC
*
17089340 AAAAACACAAAAAAAC-AA
1 AAAAAAACAAAAAAACAAA
*
17089358 AAAAAAACAAAAAAATAAA
1 AAAAAAACAAAAAAACAAA
17089377 AAAAAATAC-AAAAAACAAA
1 AAAAAA-ACAAAAAAACAAA
17089396 AAA
1 AAA
17089399 TGATAATGTT
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
18 14 0.39
19 20 0.56
20 2 0.06
ACGTcount: A:0.86, C:0.10, G:0.00, T:0.03
Consensus pattern (19 bp):
AAAAAAACAAAAAAACAAA
Found at i:17089367 original size:18 final size:18
Alignment explanation
Indices: 17089340--17089398 Score: 82
Period size: 18 Copynumber: 3.2 Consensus size: 18
17089330 AGCTTTAGTC
*
17089340 AAAAACACAAAAAAACAA
1 AAAAAAACAAAAAAACAA
*
17089358 AAAAAAACAAAAAAATAA
1 AAAAAAACAAAAAAACAA
*
17089376 AAAAAAATACAAAAAACAA
1 AAAAAAACA-AAAAAACAA
17089395 AAAA
1 AAAA
17089399 TGATAATGTT
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
18 24 0.67
19 12 0.33
ACGTcount: A:0.86, C:0.10, G:0.00, T:0.03
Consensus pattern (18 bp):
AAAAAAACAAAAAAACAA
Found at i:17090269 original size:19 final size:19
Alignment explanation
Indices: 17090245--17090300 Score: 58
Period size: 20 Copynumber: 2.9 Consensus size: 19
17090235 TCCGGCGAAC
*
17090245 TTCCGACGAAATTTCTAGA
1 TTCCGACGAAATTTCCAGA
* *
17090264 TTCCGATGACATTTTCCAGA
1 TTCCGACGA-AATTTCCAGA
* *
17090284 ATCCGACGAAAATTCCA
1 TTCCGACGAAATTTCCA
17090301 CCAGTGTTCT
Statistics
Matches: 29, Mismatches: 7, Indels: 2
0.76 0.18 0.05
Matches are distributed among these distances:
19 14 0.48
20 15 0.52
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.29
Consensus pattern (19 bp):
TTCCGACGAAATTTCCAGA
Found at i:17090743 original size:16 final size:15
Alignment explanation
Indices: 17090700--17090755 Score: 58
Period size: 16 Copynumber: 3.5 Consensus size: 15
17090690 TTATCATATT
17090700 TTTATTTTTGTTTTAC
1 TTTATTTTT-TTTTAC
*
17090716 TTTTTTTTTTTTTATC
1 TTTATTTTTTTTTA-C
* *
17090732 TTTATTTATTTTCAC
1 TTTATTTTTTTTTAC
17090747 TTTTATTTT
1 -TTTATTTT
17090756 GTTCTATTTT
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
15 6 0.18
16 27 0.82
ACGTcount: A:0.12, C:0.07, G:0.02, T:0.79
Consensus pattern (15 bp):
TTTATTTTTTTTTAC
Found at i:17090750 original size:22 final size:22
Alignment explanation
Indices: 17090725--17090766 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
17090715 CTTTTTTTTT
17090725 TTTTATCTTTATT-TATTTTCAC
1 TTTTAT-TTTATTCTATTTTCAC
*
17090747 TTTTATTTTGTTCTATTTTC
1 TTTTATTTTATTCTATTTTC
17090767 TTTAAATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.14, C:0.12, G:0.02, T:0.71
Consensus pattern (22 bp):
TTTTATTTTATTCTATTTTCAC
Found at i:17091037 original size:56 final size:58
Alignment explanation
Indices: 17090777--17091221 Score: 665
Period size: 57 Copynumber: 7.7 Consensus size: 58
17090767 TTTAAATAAA
17090777 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
1 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
*
17090835 AAAAAAACATTTTT-GGGAAAAGTTGAAAGTATCAATATTT-CTTAAAAATAAATTTTC
1 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAAT-TTTCCTTAAAAATAAATTTTC
* *
17090892 AAAAAAACATTTTTGGGGAAAAGTTGAAATTATCAATTTTCCTTAAAAATAAA-TTTC
1 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
*
17090949 CAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
1 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
*
17091007 -AAAAAACATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA-TTTC
1 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
* *
17091062 CAAAAAATATTTTTGGGGAAAAATTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
1 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
* * * *
17091120 AAAAGAAAAAGGATTTTTGAGAAAAAGTTGAAAGTATGAA-TTTCCTTAAAAATAAA-TTTC
1 --AA-AAAAA-TATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
*
17091180 AAAAAAAATATTTTT-GGGAAAAGTTGAAATTATCAATTTTCC
1 -AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
17091222 CTACACAAAA
Statistics
Matches: 356, Mismatches: 19, Indels: 25
0.89 0.05 0.06
Matches are distributed among these distances:
55 4 0.01
56 67 0.19
57 170 0.48
58 62 0.17
59 3 0.01
60 5 0.01
61 21 0.06
62 24 0.07
ACGTcount: A:0.46, C:0.08, G:0.12, T:0.35
Consensus pattern (58 bp):
AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
Found at i:17091055 original size:113 final size:114
Alignment explanation
Indices: 17090777--17091221 Score: 682
Period size: 113 Copynumber: 3.9 Consensus size: 114
17090767 TTTAAATAAA
*
17090777 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAA
1 AAAAAAACATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA-TTTCAAAAAAA
*
17090842 CATTTTTGGGAAAAGTTGAAAGTATCAATATTT-CTTAAAAATAAATTTTC
65 TATTTTTGGGAAAAGTTGAAAGTATCAAT-TTTCCTTAAAAATAAATTTTC
* *
17090892 AAAAAAACATTTTTGGGGAAAAGTTGAAATTATCAATTTTCCTTAAAAATAAATTTCCAAAAAAT
1 AAAAAAACATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCAAAAAAAT
17090957 ATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
66 ATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
*
17091007 -AAAAAACATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCCAAAAAAT
1 AAAAAAACATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCAAAAAAAT
*
17091070 ATTTTTGGGGAAAAATTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
66 ATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
* * * *
17091120 AAAAGAAAAAGGATTTTTGAGAAAAAGTTGAAAGTATGAA-TTTCCTTAAAAATAAATTTCAAAA
1 --AA-AAAAA-CATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTC-AAA
*
17091184 AAAATATTTTTGGGAAAAGTTGAAATTATCAATTTTCC
61 AAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCC
17091222 CTACACAAAA
Statistics
Matches: 308, Mismatches: 13, Indels: 15
0.92 0.04 0.04
Matches are distributed among these distances:
113 98 0.32
114 32 0.10
115 90 0.29
116 1 0.00
117 5 0.02
118 51 0.17
119 31 0.10
ACGTcount: A:0.46, C:0.08, G:0.12, T:0.35
Consensus pattern (114 bp):
AAAAAAACATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCAAAAAAAT
ATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
Found at i:17091756 original size:26 final size:26
Alignment explanation
Indices: 17091720--17091772 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17091710 CTGATCTGAT
*
17091720 CTTAGTCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17091746 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17091772 C
1 C
17091773 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17092644 original size:26 final size:26
Alignment explanation
Indices: 17092615--17092664 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
17092605 CCGGTCTGAT
17092615 CTTAGACTGAGAATGAACTCCGTACG
1 CTTAGACTGAGAATGAACTCCGTACG
*
17092641 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGAGAATGAACTCCGTA
17092665 TACCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTACG
Found at i:17093100 original size:26 final size:27
Alignment explanation
Indices: 17093045--17093100 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
17093035 TTTTTCATGA
* * *
17093045 TTTTTAAAACTTTTTACGGTTTGAGAT
1 TTTTTAAAACTTTTTACAGATGGAGAT
17093072 TTTTTAAAACTTTTT-CAGATGGAG-T
1 TTTTTAAAACTTTTTACAGATGGAGAT
17093097 TTTT
1 TTTT
17093101 GCCCCAAACT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
25 5 0.19
26 6 0.23
27 15 0.58
ACGTcount: A:0.25, C:0.07, G:0.14, T:0.54
Consensus pattern (27 bp):
TTTTTAAAACTTTTTACAGATGGAGAT
Found at i:17093547 original size:26 final size:26
Alignment explanation
Indices: 17093505--17093557 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17093495 CCAGTTTGAT
17093505 CTTAGACTGGTAATGAACTCCGTATG
1 CTTAGACTGGTAATGAACTCCGTATG
*
17093531 CTTAGACTCGG-AGTGAACTCCGTATG
1 CTTAGACT-GGTAATGAACTCCGTATG
17093557 C
1 C
17093558 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGTAATGAACTCCGTATG
Found at i:17094002 original size:895 final size:890
Alignment explanation
Indices: 17091714--17094527 Score: 3988
Period size: 895 Copynumber: 3.1 Consensus size: 890
17091704 CTCAGTCTGA
*
17091714 TCTGATCTTAGTCTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
** * * * * *
17091779 CAACCCGTGAAACGAGCGTTCGGGCGCTCAGTCGGCCAGAGGGGTGGGATGCACAAGCCGGGGAT
66 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGAT
* * * *
17091844 CGACCAGGTCCCACTTTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCTGATCCAATCTTA
131 CGACC-GGTCCCACTCTGCGTGCTGCCGATCCTGCTATCGCAACCCTCGGTCTGGTCCAATCTTA
*
17091909 GACTAGGAATGAACTCCA-TATGCCTAAGCCAACCGACGAAATGAGCGGGCGGCCGGGCACTACG
195 GACTAGGAATGAACT-CAGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCCGGGCACTACG
*
17091973 CCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATC
259 CCGGCCAGAGAGAC-GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
*
17092038 TTTATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
323 TTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * * ** *
17092103 TTCATGTGAAGCTTT-ATGGCAAGACAACTCGTTTTCTATTTTTCACGATTTTTGAAACCTTTTG
388 TTCACGTGAAG-TTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAATTTTTA
* ** * * * *
17092167 CGGTTTGAGAATTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGGCATGATCC
452 CGGTTTGAGATTTTTTAAAATTTTTTCAAAAGAATTTTTGGCCCCAAACTTGGTAGACGTGATCC
* *
17092232 TTGTATTTTTGTTGGCATGCACAAAAACATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGA
517 TTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGG
* * *
17092297 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCGGCGAACCTGTAAAATC
582 CCATTTG-AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* *
17092362 TCAAATGCTCTTTAAGGGTGTGTGAGTTCTCCAGGTTTGATGAGGGA-AAGGAGGCCAATATAAG
646 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGG-GGCCAATATAAG
* * * * *
17092426 GGCCAAGTACCAGCACCCATCACAGATCTTGTACGCACACCCCCCCAGA-CCCCCGATCCCCGAA
710 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCC-GACCCCCCGATCGCCGAA
* * ** * * *
17092490 ACCCTAATGTCGTCGATCAGGTTCTCCAACGATGCTAC-GACGATGGTGCCTCGACGAACAAAAA
773 ACCCCAATGTCGTCGGTCAGGTTCTCCGGCGATGCT-CTGGCGATGGTGCCACGACGAAGAAAAA
* * * * *
17092554 TACGGCACCAGCACTTGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGATCCGG
837 TGCGACACCAGCACATGCCCGAG-CCAGCATGTGCTGCCGCAACCCTCGATCCGG
* * *
17092609 TCTGATCTTAGACTGAGAATGAACTCCGTACGCTTAGACTGGGAATGAACTCCGTATACCTAAGT
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * ** *
17092674 CAACCCACGAAACGAGCGTACGGGCGCTCAGCTGGCCAGAGGGATGGGATGCGCAAGCCGGGGAT
66 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGAT
* * * * * * **
17092739 CGACCGGTCCCCCTCTACATGCTGCCGATCTTGCTGTCGCAACCCTCGATCTGGTCTGATCTTAG
131 CGACCGGTCCCACTCTGCGTGCTGCCGATCCTGCTATCGCAACCCTCGGTCTGGTCCAATCTTAG
* * * **
17092804 ACT-GGCAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCACTACTT
196 ACTAGG-AATGAACTCAGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCCGGGCACTACGC
* * *
17092868 CAGCCAGAGAGACGAGATGCGCAAGCCTTGGATCGATAGGGTGGTAGGTGCGTTTAGGCACATCT
260 CGGCCAGAGAGACG-GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* * *
17092933 TCATATTTTTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCA
324 TCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
17092998 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT-AAAACTTTTTAC
389 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAA-TTTTTAC
* ** * *
17093062 GGTTTGAGATTTTTTAAAACTTTTTCAGATGGAGTTTTT-GCCCCAAACTTGGTAGACGTGATTC
453 GGTTTGAGATTTTTTAAAATTTTTTCA-AAAGAATTTTTGGCCCCAAACTTGGTAGACGTGATCC
* *
17093126 TTGTA-TTTTGTTGGTATGCACAAAAA-ATT-TGCTAAAAACTCGAAGTGTACAAGATTTTGTGG
517 TTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGG
17093188 CCATTTG-AAAAGTGT-CCCATTTCAGACAC-TTAATGGCTACTGGCAGCAAACCTGTAAAATCT
582 CCATTTGAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
17093250 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGG
647 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGG
*
17093315 CCAAGTATCAGCACCCATCGCACATCATGTGCGCACATCCCCTCCTGACCCCCCCGATCGCCGAA
712 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCC-CC-GA-CCCCCCGATCGCCGAA
* * *
17093380 ACCCCAATGCCGTCGGTCAGGTTCTTCGGTGATGCTCTGGCGATGGTGCCACGACGAAGAAAAAT
773 ACCCCAATGTCGTCGGTCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCACGACGAAGAAAAAT
*
17093445 GCGACACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCAACCCTCGATCCAG
838 GCGACACCAGCACATGCCCGAGCC-AGCATGTGCTGCCGCAACCCTCGATCCGG
* * * *
17093499 TTTGATCTTAGACTGGTAATGAACTCCGTATGCTTAGACTCGGAGTGAACTCCGTATGCCTAAGT
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
*
17093564 CAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGAT
66 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGAT
* * * * * *
17093629 CGGCCGGGTCCCTCTCTGCGTGCTGTCAATCCTGCTATTGCAACCCTTGGTCTGGTCCAATCTTA
131 CGACC-GGTCCCACTCTGCGTGCTGCCGATCCTGCTATCGCAACCCTCGGTCTGGTCCAATCTTA
* * *
17093694 GACTAGGAATGAACTCAGTATACCTAAGCCAATCGACGAAACGAGCTGGCGGGCGGTCGGGCACT
195 GACTAGGAATGAACTCAGTATGCCTAAGCCAACCGACGAAACGA----GCGGGCGGCCGGGCACT
* *
17093759 ACGCCGGCCAAAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGCTTAGGCAC
256 ACGCCGGCCAGAGAGAC-GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
** * *
17093824 ATCTTCATATTTCTGCATGCCAAAGACATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
320 ATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
*
17093889 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATAATTTTTGAAAATTTT
385 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAATTTT
* * *
17093954 TACGGTTCGGGATTTTTTAAAATTTTTTCAAAAAAATTTTTGGCCCCAAACTTGGTAGACGTGAT
450 TACGGTTTGAGATTTTTTAAAATTTTTTCAAAAGAATTTTTGGCCCCAAACTTGGTAGACGTGAT
* *
17094019 CCTTGAATTTTTTTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
515 CCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* *
17094084 GGCCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGTCTATTGGCAGCAAACCTGTAAAA
580 GGCCATTTG-AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* *
17094149 TCTCAAATGCTCTTTAAGGGGGTGTGACTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
644 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAA
* * *
17094214 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACA-CCCCCGGCCCCCCGATCGCCGGAA
709 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCGATCGCCGAAA
* *
17094278 CCCCAATGTCGTCGGTCAGGTTCTCCGGCGATGCTCTGGCGATAGTGCCCCGACGAAGAAAAATG
774 CCCCAATGTCGTCGGTCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCACGACGAAGAAAAATG
* * * * *
17094343 C-ATCACCAGCACATGCCCGAGTCCAGCACGTGCTGCCACATCCCTCGGTTCGG
839 CGA-CACCAGCACATGCCCGAG-CCAGCATGTGCTGCCGCAACCCTCGATCCGG
* * *
17094396 TCTGATCTTACACTGGGAATGAACTCCATATGCTTGGACTGGGAATGAACTCCGTATGCCTAAGT
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * *
17094461 TAACCCACGAAACGAGCGTGCAGGCGATCAGTCGGCCAGAAGGGCGAGATGCGCAAGCC-AGGGA
66 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGA-GGA
17094525 TCG
130 TCG
17094528 GTCAGATCTT
Statistics
Matches: 1709, Mismatches: 179, Indels: 60
0.88 0.09 0.03
Matches are distributed among these distances:
887 124 0.07
888 22 0.01
889 11 0.01
890 233 0.14
891 121 0.07
892 5 0.00
893 30 0.02
894 329 0.19
895 373 0.22
896 26 0.02
897 237 0.14
898 42 0.02
899 2 0.00
900 11 0.01
901 14 0.01
902 129 0.08
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (890 bp):
TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGAT
CGACCGGTCCCACTCTGCGTGCTGCCGATCCTGCTATCGCAACCCTCGGTCTGGTCCAATCTTAG
ACTAGGAATGAACTCAGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCCGGGCACTACGCC
GGCCAGAGAGACGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
ATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAATTTTTACGGT
TTGAGATTTTTTAAAATTTTTTCAAAAGAATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
ATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGGCCAT
TTGAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAA
GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCGATCGCCGAAACCCCAAT
GTCGTCGGTCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCACGACGAAGAAAAATGCGACACC
AGCACATGCCCGAGCCAGCATGTGCTGCCGCAACCCTCGATCCGG
Found at i:17095287 original size:26 final size:26
Alignment explanation
Indices: 17095251--17095303 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17095241 CTGATCCAAT
*
17095251 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17095277 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17095303 C
1 C
17095304 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17096180 original size:26 final size:26
Alignment explanation
Indices: 17096151--17096203 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17096141 CCGGTCCGAT
17096151 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17096177 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17096203 C
1 C
17096204 CTAAGCCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17096553 original size:159 final size:159
Alignment explanation
Indices: 17096177--17096542 Score: 531
Period size: 159 Copynumber: 2.3 Consensus size: 159
17096167 ACTCCGTATG
*
17096177 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAGC
* * * * * *
17096242 CGGCCAGTGGGGCGGGATGCGCAAGCCGGGGATCGACTGGGTCCCCCATTGCGTGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCAACTGGGTCCCCCATTGCATGCTGCCAAACC
* * *
17096307 TGCTACCATAACCCTCGATCTGGTCTGAT
131 AGCTACCACAACCCTCGATCTGGTCTAAT
* *
17096336 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAGC
* *
17096401 CGGCCAGAGGGGCGGGATGCGTAAGCCGAGGATCAA-TCGGGTCCCCC-TCTGCATGCTGTCAAA
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCAACT-GGGTCCCCCAT-TGCATGCTGCCAAA
*
17096464 CCAGCTACCGCAACCCTC-AGTCTGGTCTAAT
129 CCAGCTACCACAACCCTCGA-TCTGGTCTAAT
**
17096495 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGGCGAAACGA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA
17096543 ATGGGTGGGC
Statistics
Matches: 186, Mismatches: 18, Indels: 6
0.89 0.09 0.03
Matches are distributed among these distances:
158 3 0.02
159 183 0.98
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.18
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCAACTGGGTCCCCCATTGCATGCTGCCAAACC
AGCTACCACAACCCTCGATCTGGTCTAAT
Found at i:17098100 original size:868 final size:863
Alignment explanation
Indices: 17096316--17099063 Score: 3807
Period size: 872 Copynumber: 3.2 Consensus size: 863
17096306 CTGCTACCAT
* * *
17096316 AACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
1 AACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * *
17096381 CGAGTGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGTAAGCCGAGGATCAATCGGGTCCC
66 CGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCC
* * * * * *
17096446 CCTCTGCATGCTGTCAAACCAGCTACCGCAACCCTC-AGTCTGGTCTAATCTTAGACTGGGAATG
131 CCTCTGCGTGCTGTCAATCCTGCTGCCGCAACCCTCGA-TCCGGTCCAATCTTAGACTGGGAATG
* * * * * *
17096510 AACTCCGTATGCCTAAGCCAACCGGCGAAACGAATGGGTGGGCGGACGGGCAGGCACTACGCCGA
195 AACTCCGTATGCCTAAGCCAACCGACGAAACG-A-GCGT-----G-CGGGCACGCACCACGTCGG
* *
17096575 TCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
252 CCA-AGAGACGGGATGCGCAAGCCGTGGATCGATA-GGTGGTATGTGGGTTTAGGCACATCTTCA
* *
17096640 TATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAGTTCATACAATGGCTCCCTTAAGCCTTC
315 TATTTCT-TGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG-TCCCTTAACCCTTC
* * * * ** *
17096705 ACATGAAGTTTCATGGCAAGATGTCTTATTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGT
378 ACGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGT
* ** * * *
17096770 TTGTAATTTTTTTAAATTTTTTC-GAATGTAGTTTTTGCC-CCAAACTTGGTAGACATGATCCTT
443 TCGGGATTTTTTAAAATTTTTTCGGAA-GGAG-TTTTGCCACCAAACTTGGTAGACGTGATCCTT
* * * * *
17096833 GTATTTTTCTTGCCAGGCACAAAAAAATTCAGCTAAAAAATCGAAGTGTATAAGATTTTGTGACC
506 GTATTTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
17096898 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
570 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* ** *
17096963 AAATGCTCTTTAAGGGGGTGTGAGTTCTTGA-GTTTGATGAGGGATA-GGGGCCAATATAAAGGC
635 AAATGCTCTTTAAGGTGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* * *
17097026 CAAGTACCAGCACCCATCGCACATTATGTGTGCACACCCCCCGGGCCCCCCGAAT-GTCGGAACC
700 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCG-ATCGTCGGAACC
* **
17097090 CCAATGCCGCCGGTCAGGTTCTTCGGTGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCG
764 CCAATGCCGCCGGTCAGGTTC-TCCGTGATGCTCCGACGATGGTGCCCCGGCAAAGAAAAATGCG
* * *
17097155 GCACCAGCATATGCTCGAGCCCAGCATGTGCTGCTGT
828 GCACCAGCAAATGCCCGAGCCCAGCATGTGCTGC-GC
* * * *
17097192 AACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCCCAAAA
1 AACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * * * * *
17097257 CGAGCGTGCGGACGCTCAGCTGGGCATAGGGACGGGATGCGCAAGCCGGGGATCGGGT-GGGTCC
66 CGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GATCGGGTCC
* ** *
17097321 CCCTCTGCGTGCTGTCAATCCTGCTGCCACAACCCTCGATCCAATCCAATCTTACACTGGGAATG
130 CCCTCTGCGTGCTGTCAATCCTGCTGCCGCAACCCTCGATCCGGTCCAATCTTAGACTGGGAATG
* *
17097386 AACTCCGTATGGCTAAGCCAACCGACGAAACGAGCGTGCGGGCACTCACCACGTCGGCCTAAGAG
195 AACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGTGCGGGCACGCACCACGTCGGCC-AAGAG
* * * **
17097451 ACGGGATGCACAAGTCGTGGATCGATAGTGTGGTATGTAGGTTTAGGCACAAGTTCATATTTCTA
259 ACGGGATGCGCAAGCCGTGGATCGATAG-GTGGTATGTGGGTTTAGGCACATCTTCATATTTCT-
17097516 TGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAACCCTTCACGTGAAGT
322 TGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAACCCTTCACGTGAAGT
17097581 TTCATGGCAAGATGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTT
387 TTCATGGCAAGATGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTT
17097646 TTTAAAATTTTTTCGGAAGGAGTTTTGCCACCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
452 TTTAAAATTTTTTCGGAAGGAGTTTTGCCACCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
* * *
17097711 GGCATGCACAAAACAACTAAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
517 GGCATGCACAAAA-AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
* * *
17097776 GTGT-CCTATTTCAGACACTTTAATGGCTACTGGCGGCAAACCTGTAAAATCTCAAATGCACTTT
581 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
*
17097840 AAGGTAGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
646 AAGGTGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * * *
17097905 ACCCATCGCACATCATGTGCGCACAGCCCCCCCAGCCCCCCGATCGTCGAAACCCTAATGCCGTC
711 ACCCATCGCACATCATGTGCGCACA-CCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCC
* * * *
17097970 GGTCAGGTTCTCCAGTGATGCTCCGGCGATGGTGCCCCGAG-AAAGAAAAATGTGGCA-CGGCAC
775 GGTCAGGTTCTCC-GTGATGCTCCGACGATGGTGCCCCG-GCAAAGAAAAATGCGGCACCAGCAA
17098033 ATGCCCGAGCCCAGCATGTGCTGTCGC
838 ATGCCCGAGCCCAGCATGTGCTG-CGC
* *
17098060 AACCCTCGGTCCGATCCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
1 AACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * *
17098125 CGAGCGTACGTGTGCTCAACTGGCCAGAGGGGCGGGATGC-CTAAGCCGGGGATCGATCGGGTCC
66 CGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC-AAGCCGGGGATCGATCGGGTCC
* * * * *
17098189 CCCTCTACGTGCTGTCAATCCTACTGTCGCAACCCTCGGTTCGGTCCAATCTTAGACTGGGAATG
130 CCCTCTGCGTGCTGTCAATCCTGCTGCCGCAACCCTCGATCCGGTCCAATCTTAGACTGGGAATG
* * * *
17098254 AACTCCGTATGCCTAAGCCAACGGACGAAATGAGCGGGCGGGCGGGCGAGCACCACGTCGGCCAA
195 AACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGTGCGGGC--AC--GCACCACGTCGGCC-A
17098319 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGATGGT-TGGTGGGTTTAGGCACATCTTCATAT
255 AGAGACGGGATGCGCAAGCCGTGGATCGATAGG-TGGTAT-GTGGGTTTAGGCACATCTTCATAT
* *
17098383 TT-TTGCATGCCAATGCCATTTCTATGGCTTGTAAATTCATACAATGCTCCCTTAACCCTTCACG
318 TTCTTG--TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAACCCTTCACG
* ** *
17098447 TGAAGTTTCACGGCAAGACAACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCG
381 TGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCG
**
17098512 GGATTTTTTAAAATTTTTT-GGAAGGAGTTTTGGAACCAAACTTGGTAGACGTGATCCTTGTATT
446 GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGCCACCAAACTTGGTAGACGTGATCCTTGTATT
17098576 TTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
511 TTTGTTGGCATGCACAAAAA-ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
17098641 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
575 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
*
17098706 CTCTTTAA-GTGGGTGTGAGTTCTCTAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
640 CTCTTTAAGGT-GGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* * * * *
17098770 TACTAGCACCCATCACATATCATGTGCGCACACCCCCCTGGCCCCCTCGATCGTTGGAACCCCAA
704 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC-CGATCGTCGGAACCCCAA
* * * * *
17098835 TGCCGCCGGTCAGGTTCTCCGACGATGCTCCAATGATGGTGCCCTGGCAAAGAAAAATACGGCAC
768 TGCCGCCGGTCAGGTTCTCCG-TGATGCTCCGACGATGGTGCCCCGGCAAAGAAAAATGCGGCAC
*
17098900 CAGCAAATGCCCGAGCCCAGCATGTGCTGCCAC
832 CAGCAAATGCCCGAGCCCAGCATGTGCTG-CGC
* * *
17098933 AACCCTCAGTCTGATCCGATCTTAGACTTGGAATGAACTCCGTATGCCTAACTCAACCCACGAAA
1 AACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * *
17098998 CGAGCTTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGTGCAAGCCGGGGATCGGTCGGGTCCC
66 CGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCC
17099063 C
131 C
17099064 ATTTTAGACA
Statistics
Matches: 1669, Mismatches: 171, Indels: 67
0.88 0.09 0.04
Matches are distributed among these distances:
866 84 0.05
867 202 0.12
868 404 0.24
869 82 0.05
870 5 0.00
871 132 0.08
872 412 0.25
873 145 0.09
874 4 0.00
875 1 0.00
876 196 0.12
877 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (863 bp):
AACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
CGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCC
CCTCTGCGTGCTGTCAATCCTGCTGCCGCAACCCTCGATCCGGTCCAATCTTAGACTGGGAATGA
ACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGTGCGGGCACGCACCACGTCGGCCAAGAGAC
GGGATGCGCAAGCCGTGGATCGATAGGTGGTATGTGGGTTTAGGCACATCTTCATATTTCTTGTG
CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAACCCTTCACGTGAAGTTTCA
TGGCAAGATGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTA
AAATTTTTTCGGAAGGAGTTTTGCCACCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
TGCACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGT
GGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
TCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAG
GTTCTCCGTGATGCTCCGACGATGGTGCCCCGGCAAAGAAAAATGCGGCACCAGCAAATGCCCGA
GCCCAGCATGTGCTGCGC
Found at i:17100303 original size:26 final size:26
Alignment explanation
Indices: 17100267--17100318 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
17100257 TAGTCCAATT
17100267 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
17100293 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
17100319 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:17100608 original size:185 final size:185
Alignment explanation
Indices: 17100267--17100662 Score: 453
Period size: 185 Copynumber: 2.1 Consensus size: 185
17100257 TAGTCCAATT
* *
17100267 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCA
1 TTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * * *
17100332 TGAAATGAGCGTGCGGGCGCTCAACCGACCAGAGGGGTAGGATGTGCAAGTCGGGGATCGATCGG
66 CGAAACGAGCGTGCGGGCGCTCAACCGACCAGAGGGGTAGGATGCGCAAGTCGAGGATCGACCAG
* * **
17100397 GTCGCCCACTGCTTGTTGTTGATCCTGCTGCTACAACCCTCAGTCCGGTTTGATC
131 GTCGCCCACTGCTTGTTGTCGATCCTGCTACTACAACCCTCAGTCCGGTCCGATC
* ** * *
17100452 TTAGACCGGGAATGAACTTTGCATGCTTATACTGGGGATGAACTCCGTATGCCTAAGTCAACCCA
1 TTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * *
17100517 CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG-CGGCATGCGCAAG-CTGAGGATCTG-C
66 CGAAACGAGCGTGCGGGCGCTCAACCGACCAGAGGGGTAGG-ATGCGCAAGTC-GAGGATC-GAC
* * * * *
17100579 CAGGTC-CTC-CT-CTATGTGCTGTCGATCCTGCTACTGCAAGCCTTAGTTCGGTCCGATC
128 CAGGTCGCCCACTGCT-TGT--TGTCGATCCTGCTACTACAACCCTCAGTCCGGTCCGATC
* *
17100637 TTAGACTGGGAATGAGCTCCGTATGC
1 TTAGACTGGGAATGAACTCCGCATGC
17100663 CTAAGCCAAC
Statistics
Matches: 175, Mismatches: 30, Indels: 12
0.81 0.14 0.06
Matches are distributed among these distances:
182 2 0.01
183 5 0.03
184 5 0.03
185 162 0.93
186 1 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.23
Consensus pattern (185 bp):
TTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
CGAAACGAGCGTGCGGGCGCTCAACCGACCAGAGGGGTAGGATGCGCAAGTCGAGGATCGACCAG
GTCGCCCACTGCTTGTTGTCGATCCTGCTACTACAACCCTCAGTCCGGTCCGATC
Found at i:17101379 original size:26 final size:26
Alignment explanation
Indices: 17101340--17101392 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17101330 CCGGTCCGAT
*
17101340 CTTAGACCGAGAATGAACTTCGTATG
1 CTTAGACCGAGAATGAACTCCGTATG
* *
17101366 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACCGAGAATGAACTCCGTATG
17101392 C
1 C
17101393 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACCGAGAATGAACTCCGTATG
Found at i:17101774 original size:893 final size:886
Alignment explanation
Indices: 17100448--17103147 Score: 3685
Period size: 889 Copynumber: 3.0 Consensus size: 886
17100438 AGTCCGGTTT
** * * *
17100448 GATCTTAGACCGGGAATGAACTTTGCATGCTTATACTGGGGATGAACTCCGTATGCCTAAGTCAA
1 GATCTTAGACCGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * *
17100513 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGCATGCGCAAGCTGAGGATCTG
66 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGG
* * * * ** *
17100578 CCAGGTCCTCCTCTATGTGCTGTCGATCCTGCTACTGCAAGCCTTAGTTCGGTCCGATCTTAGAC
131 CCGGGTCCCCCTCTATGTGCTGCCGATCCTGCT-CTGCAACCCTCGGTCCGGTCCGATCTTAGAC
* * * * *
17100643 TGGGAATGAGCTCCGTATGCCTAAGCCAACTGA-TAAACG-A---GCGGGCGGGCGCTACGCTGG
195 TGGGAATGAACTCCATATGCCTAAGCCAACTGACAAAACGAACGGGCGGGCGGGCACTACAC-GG
* * *
17100703 CCAGAGAGACGGGGTGCGTAAGCCGTGGATCGATAGGGTGGTCGGTGGGTTTAGGCACATCTTCA
259 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
*
17100768 TATTTCTGTGTGCCAATGCCATTTTTATAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
324 TATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
*
17100833 CGTGAACTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTT
389 CGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTT
* *
17100898 CGGGATTTTTTCAAATTTTTTCAAAAGGAGTTTTGCCCAAACTTGGTAGA-TGATCCTTGTATTT
454 CGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGCCCAAACTTGGTAGAGTGATCCTTGTATTT
* * *
17100962 TTATTGGCATGCACAAAAAAATTCAGCT-AAAACTCGAAGTGTCCAAGGTTTTGTAGACCATTCG
519 TTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT-GACCATTTG
*
17101026 AAAAAAGTGGTCCCCCATTTCCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
583 AAAAAAGT-GT-CCCCATTT-CAGACATTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* * *
17101091 ATGCTCTTTAAGGGGGTGTGAGTACTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGTCA
645 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* * * * * *
17101156 AGTACCAGCACCCATCGAACACCATGTGTGCACACCCCCTGGCCCCTCCGATCATCAGAACCCTA
710 AGTACTAGCACCCATCGAACAACATGTGCGCACACCCCC-GGCCCC-CCGATCGTCGGAACCCCA
* * * * * *
17101221 ATGCCGTCGGTCAAGTTCTCCGGCTATGCTCAT-GCGATGGTGCCCCGGTGAAGAAAAATACGGC
773 ATACCG-CGGTCAGGTTCTCCGACGATGCTC-TGGCGAT-GTGCCCCGATGAAGAAAAATATGGC
* ** *
17101285 ACCAGTAGATGCCCGAGCTTAGCATGTGCTACCGTAACCCTCGGTCCGGTCC
835 ACCAGCAGATGCCCGAGCACAGCATGTGCTACCGTAACCCTCGGTCCGATCC
* *
17101337 GATCTTAGACCGAGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
1 GATCTTAGACCGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * *
17101402 CCCACGAAACGAGCATGC-GGCTGCTCAACCGGCTAGAGGGGCGGGATGCGCAAGCCGGGGATCG
66 CCCACGAAACGAGCGTGCGGGC-GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* * * * *
17101466 GTCGGGTCCCCCTCTGTGTGCTGCCAATCCTGGTGCTGCAACCCTCGGTCCAGTCCGATCTTAGA
130 GCCGGGTCCCCCTCTATGTGCTGCCGATCCTGCT-CTGCAACCCTCGGTCCGGTCCGATCTTAGA
*
17101531 CTGGGAATGAACTCCATATGCCTAAGCCAA-TCGACAAAACGAACGGGCGGGCGGGCACTACACC
194 CTGGGAATGAACTCCATATGCCTAAGCCAACT-GACAAAACGAACGGGCGGGCGGGCACTACACG
* * ** *
17101595 GACAGAGAGACGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAAACAAATCTTC
258 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
17101660 ATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
323 ATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* *
17101725 ACGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTCTACGGT
388 ACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGT
* * * * *
17101790 TCGAGATTTTTTAAAATTATCTCAGAAGGAGTTTTTTCCCCAATCTTGGTAGATGTGATCCTTGT
453 TCGGGATTTTTTAAAATTTTTTCAGAAGGAG--TTTTGCCCAAACTTGGTAGA-GTGATCCTTGT
* * *
17101855 ATTTTTTTTGGCATTCACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCAT
515 ATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
17101920 TTGAAAAAAGTGTCCCCATTTCAGACATTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
580 TTGAAAAAAGTGTCCCCATTTCAGACATTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* * *
17101985 ATACTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGTTGAGGGATA-GGGGCCACTATAAGGGCCA
645 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* * * *
17102048 AGTACTAGCACCTATC-ACACATCATGTGCGCACACCCCCCCGGTGCCCCCAATCGTCGGAACCC
710 AGTACTAGCACCCATCGA-ACAACATGTGCGCACA--CCCCCGG-CCCCCCGATCGTCGGAACCC
* * *
17102112 CAATACCGCCGGTTAGGTTCTCCGACGATGCTCTGGCGATGTGCCCTGATGAAGAAAAATGTGGC
771 CAATACCG-CGGTCAGGTTCTCCGACGATGCTCTGGCGATGTGCCCCGATGAAGAAAAATATGGC
* * *
17102177 ACCAGCACATGCCCGAGCACAGCATGTGCTACCGTAACCCTTGGTTCGATCC
835 ACCAGCAGATGCCCGAGCACAGCATGTGCTACCGTAACCCTCGGTCCGATCC
* * *
17102229 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAA
1 GATCTTAGACCGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * *
17102294 CCCGCGAAACGAGCGTGCGGGCGCTCAGCCGTCCAGA-GGGCGGGATGCGCAAGCCGGGGATCGA
66 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGG
* * * * * * * *
17102358 CCGCGTCCCCTTCTACGTGCTACCGATCCTACTATCGCAACCCTCGATCCGGCCCGATCTTAGAC
131 CCGGGTCCCCCTCTATGTGCTGCCGATCCTGCTCT-GCAACCCTCGGTCCGGTCCGATCTTAGAC
* * * * * *
17102423 TGGGAATGAACTCTATATGCCTAAGCCAACTGACGAAATGAGCGGGCTGGCGGGCACTACGTCGG
195 TGGGAATGAACTCCATATGCCTAAGCCAACTGACAAAACGAACGGGCGGGCGGGCACTAC-ACGG
**
17102488 CCAGAGAGACAAGATGCGCAAG--GTAGGGATCGATA--GTGGTAGGTGGGTTTAGGCACATCTT
259 CCAGAGAGACGGGATGCGCAAGCCGT--GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* * * *
17102549 CATATTTCTGTGTGCTAATGCCATTTTTACGGCTTGAAAATTCATACTATGGTCCCTTAAGCCTT
322 CATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* ** * * * *
17102614 CACATGAAGTTTCATGGCAAGACAACTTGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGA
387 CACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGG
* * *
17102679 TTCGGGA-TTTTTAAAACTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
452 TTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTT-G-CCCAAACTTGGTAGA-GTGATCCTTG
17102743 TA-TTTTAGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
514 TATTTTTA-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
17102807 ATTTGAAAAAAGTGTCCCCATTTCAGACATTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
578 ATTTGAAAAAAGTGTCCCCATTTCAGACATTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* *
17102872 AAATGCTCTTTAAGAGGGAGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
643 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* ** *
17102937 CAAGTACTAGCACCCATCGCACAACATGTGCGCACACCCCCCACCCCCCCGATCGCCGGAACCCC
708 CAAGTACTAGCACCCATCGAACAACATGTGCGCACA-CCCCCGGCCCCCCGATCGTCGGAACCCC
* * *
17103002 AATACTGCTGGTCAGGTTCTCCGACGATACTCTGGCGATGTGCCCCGACGAAGAAAAATATGGCA
772 AATACCGC-GGTCAGGTTCTCCGACGATGCTCTGGCGATGTGCCCCGATGAAGAAAAATATGGCA
* * * * * *
17103067 CCAGCAGATGCCCGAGCCCAGCATGTGCTGCGGCAACCCTTGGTCCAATCC
836 CCAGCAGATGCCCGAGCACAGCATGTGCTACCGTAACCCTCGGTCCGATCC
* *
17103118 GATCTTAGACTGGAAATGAACTCCGTATGC
1 GATCTTAGACCGGGAATGAACTCCGTATGC
17103148 CTAAGTCAAC
Statistics
Matches: 1602, Mismatches: 179, Indels: 60
0.87 0.10 0.03
Matches are distributed among these distances:
887 4 0.00
888 9 0.01
889 519 0.32
890 190 0.12
891 179 0.11
892 230 0.14
893 288 0.18
894 76 0.05
895 26 0.02
896 2 0.00
897 56 0.03
898 23 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (886 bp):
GATCTTAGACCGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGG
CCGGGTCCCCCTCTATGTGCTGCCGATCCTGCTCTGCAACCCTCGGTCCGGTCCGATCTTAGACT
GGGAATGAACTCCATATGCCTAAGCCAACTGACAAAACGAACGGGCGGGCGGGCACTACACGGCC
AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
TTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
TGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCG
GGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGCCCAAACTTGGTAGAGTGATCCTTGTATTTTT
ATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
AAAGTGTCCCCATTTCAGACATTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACT
AGCACCCATCGAACAACATGTGCGCACACCCCCGGCCCCCCGATCGTCGGAACCCCAATACCGCG
GTCAGGTTCTCCGACGATGCTCTGGCGATGTGCCCCGATGAAGAAAAATATGGCACCAGCAGATG
CCCGAGCACAGCATGTGCTACCGTAACCCTCGGTCCGATCC
Found at i:17102261 original size:26 final size:26
Alignment explanation
Indices: 17102232--17102284 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17102222 TCGATCCGAT
17102232 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
17102258 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17102284 C
1 C
17102285 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17103811 original size:24 final size:26
Alignment explanation
Indices: 17103784--17103834 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17103774 CTGGTCTGAT
17103784 CTTAGA-T-GGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
17103808 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
17103834 C
1 C
17103835 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
24 6 0.24
25 1 0.04
26 18 0.72
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:17105766 original size:55 final size:57
Alignment explanation
Indices: 17105682--17105920 Score: 294
Period size: 55 Copynumber: 4.2 Consensus size: 57
17105672 NNNNNNNNNG
*
17105682 TCAATTTTCCTTAAAAATAAATTTTC--AAAAAACATTTTT-GGAAAAGTTGAAAGTA
1 TCAATTTTCCTTAAAAATAAA-TTTCAAAAAAAATATTTTTGGGAAAAGTTGAAAGTA
* *
17105737 TCAATTTTCCTTAAAAATAAATTTC-CAAAAAATATTTTTGGGGAAAAATTGAAAGTA
1 TCAATTTTCCTTAAAAATAAATTTCAAAAAAAATATTTTT-GGGAAAAGTTGAAAGTA
* *
17105794 TCAA-TTTCCTTAAAAATAAATTTTCAAAAGAAAAAGGATTTTTTGAGAAAAAGTTGAAAGTA
1 TCAATTTTCCTTAAAAATAAA-TTTC-AAA-AAAAA-TA-TTTTTG-GGAAAAGTTGAAAGTA
* *
17105856 TGAA-TTTCCTT-AAAATAAATTTCAAAAAAAATATTTTTGGGAAAAGTTGAAATTA
1 TCAATTTTCCTTAAAAATAAATTTCAAAAAAAATATTTTTGGGAAAAGTTGAAAGTA
17105911 TCAATTTTCC
1 TCAATTTTCC
17105921 CTACACAAAA
Statistics
Matches: 162, Mismatches: 11, Indels: 21
0.84 0.06 0.11
Matches are distributed among these distances:
54 4 0.02
55 50 0.31
56 27 0.17
57 24 0.15
58 5 0.03
59 4 0.02
60 9 0.06
61 10 0.06
62 29 0.18
ACGTcount: A:0.46, C:0.08, G:0.10, T:0.36
Consensus pattern (57 bp):
TCAATTTTCCTTAAAAATAAATTTCAAAAAAAATATTTTTGGGAAAAGTTGAAAGTA
Found at i:17105906 original size:117 final size:111
Alignment explanation
Indices: 17105682--17105917 Score: 316
Period size: 117 Copynumber: 2.1 Consensus size: 111
17105672 NNNNNNNNNG
17105682 TCAATTTTCCTTAAAAATAAATTTTCAAAAAACATTTTTGGAAAAGTTGAAAGTATCAATTTTCC
1 TCAA-TTTCCTTAAAAATAAATTTTCAAAAAACATTTTTGGAAAAGTTGAAAGTATCAATTTTCC
*
17105747 TTAAAAATAAATTTCCAAAAAATATTTTTGGGGAAAAATTGAAAGTA
65 TTAAAAATAAATTTCAAAAAAATATTTTTGGGGAAAAATTGAAAGTA
* *
17105794 TCAATTTCCTTAAAAATAAATTTTCAAAAGAAAAAGGATTTTTTGAGAAAAAGTTGAAAGTATGA
1 TCAATTTCCTTAAAAATAAATTTTC---A-AAAAA-CA-TTTTTG-G-AAAAGTTGAAAGTATCA
* *
17105859 A-TTTCCTT-AAAATAAATTTCAAAAAAAATATTTTT-GGGAAAAGTTGAAATTA
58 ATTTTCCTTAAAAATAAATTTC-AAAAAAATATTTTTGGGGAAAAATTGAAAGTA
17105911 TCAATTT
1 TCAATTT
17105918 TCCCTACACA
Statistics
Matches: 110, Mismatches: 5, Indels: 13
0.86 0.04 0.10
Matches are distributed among these distances:
111 21 0.19
112 4 0.04
114 1 0.01
115 5 0.05
116 1 0.01
117 40 0.36
118 21 0.19
119 17 0.15
ACGTcount: A:0.46, C:0.08, G:0.11, T:0.36
Consensus pattern (111 bp):
TCAATTTCCTTAAAAATAAATTTTCAAAAAACATTTTTGGAAAAGTTGAAAGTATCAATTTTCCT
TAAAAATAAATTTCAAAAAAATATTTTTGGGGAAAAATTGAAAGTA
Found at i:17106450 original size:26 final size:26
Alignment explanation
Indices: 17106414--17106466 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17106404 CTGATCTGAT
*
17106414 CTTAGTCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17106440 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17106466 C
1 C
17106467 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17107333 original size:26 final size:26
Alignment explanation
Indices: 17107304--17107353 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
17107294 CCGGTCTGAT
17107304 CTTAGACTGAGAATGAACTCCGTACG
1 CTTAGACTGAGAATGAACTCCGTACG
*
17107330 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGAGAATGAACTCCGTA
17107354 TACCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTACG
Found at i:17107790 original size:26 final size:26
Alignment explanation
Indices: 17107735--17107790 Score: 62
Period size: 27 Copynumber: 2.2 Consensus size: 26
17107725 TTTTTCATGA
* *
17107735 TTTTTAAAACTTTTTACGGTTTGAGAT
1 TTTTTAAAACTTTTTAC-GATGGAGAT
17107762 TTTTTAAAACTTTTTTA-GATGGAG-T
1 TTTTTAAAAC-TTTTTACGATGGAGAT
17107787 TTTT
1 TTTT
17107791 GCCCCAAACT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
25 5 0.19
26 5 0.19
27 10 0.38
28 6 0.23
ACGTcount: A:0.25, C:0.05, G:0.14, T:0.55
Consensus pattern (26 bp):
TTTTTAAAACTTTTTACGATGGAGAT
Found at i:17108229 original size:26 final size:26
Alignment explanation
Indices: 17108200--17108278 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
17108190 CCGGTTCGAT
* *
17108200 CTTAGACTGGTAATGAACTCCGTATG
1 CTTAGACTGGGAGTGAACTCCGTATG
17108226 CTTAGACTGGGAGTGAACTCCGTATG
1 CTTAGACTGGGAGTGAACTCCGTATG
17108252 CTTAGACTGGGAGTGAACTCCGTATG
1 CTTAGACTGGGAGTGAACTCCGTATG
17108278 C
1 C
17108279 CTAAGTCAAC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAGTGAACTCCGTATG
Found at i:17110024 original size:26 final size:26
Alignment explanation
Indices: 17109988--17110040 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17109978 CTGATCCAAT
17109988 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
17110014 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
17110040 C
1 C
17110041 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:17111156 original size:159 final size:159
Alignment explanation
Indices: 17110882--17111255 Score: 538
Period size: 159 Copynumber: 2.4 Consensus size: 159
17110872 CACTCGGTCC
* *
17110882 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGG
* * * *
17110947 CGCTCAGCCGGCCAGTGGGGCGGGATGCGCAAGCCGGGGATCGACTGGGTCCCCCAT-TGCGTGC
66 CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCAACTGGGTCCCCC-TCTGCATGC
* * * *
17111011 TGCCGATCCTGCTACCATAACCCTC-GATCT
130 TGCCAAACCAGCTACCACAACCCTCAG-TCT
*
17111041 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTACGGG
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGG
*
17111106 CGCTCAGCCGGCCAGAGGGGCGGGATGCGTAAGCCGAGGATCAA-TCGGGTCCCCCTCTGCATGC
66 CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCAACT-GGGTCCCCCTCTGCATGC
* *
17111170 TGTCAAACCAGCTACCGCAACCCTCAGTCT
130 TGCCAAACCAGCTACCACAACCCTCAGTCT
* * **
17111200 GGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGGCGAAACGA
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
17111256 ATGGGTGGGC
Statistics
Matches: 194, Mismatches: 18, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
158 2 0.01
159 191 0.98
160 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.18
Consensus pattern (159 bp):
GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGG
CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCAACTGGGTCCCCCTCTGCATGCT
GCCAAACCAGCTACCACAACCCTCAGTCT
Found at i:17112823 original size:26 final size:26
Alignment explanation
Indices: 17112794--17112846 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17112784 CCGATCCGAT
*
17112794 CTTAGATTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
17112820 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17112846 C
1 C
17112847 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17113658 original size:897 final size:895
Alignment explanation
Indices: 17111925--17113717 Score: 2691
Period size: 897 Copynumber: 2.0 Consensus size: 895
17111915 TTGGTCTGAT
* * *
17111925 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCCCAAAACGAGCGTGCGGACGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTACGGACGCTCAAC
* * * *
17111990 CGGGCATAGGGACGGGATGCACAAGCCGGGGATCGGGTGGGTCCCCCTCTGCGTGCTGTCAATCC
66 CGGCCAGAGGGACGGGATGCACAAGCCGGGGATCGGATGGGTCCCCCTCTACGTGCTGTCAATCC
* *
17112055 TGCTGCCACAACCCTCGATCCAATCCAATCTTACACTGGGAATGAACTCCGTATGGCTAAGCCAA
131 TACTGCCACAACCCTCGATCCAATCCAATCTTACACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
17112120 CCGACGAAACGAGCGTGCGGGCACTCACCACGTCGGCCTAAGAGACGGGATGCACAAGTCGTGGA
196 CCGACGAAACGAGCGGGCGGGCACGCACCACGTCGGCCAAAGAGACGGGATGCACAAGCCGTGGA
* *
17112185 TCGATAGTGTGGTATGTAGGTTTAGGCACAAGTTCATATTTCTATGTGCCAATGCCATTTTTATG
261 TCGATAGTGTGGTATGTAGGTTTAGGCACAACTTCATATTTCTATGTGCCAATGCCATTTCTATG
* * **
17112250 GCTTGTAAATTCATACAATGGTCCCTTAACCCTTCACGTGAAGTTTCATGGCAAGATGACTCATT
326 GCTTGTAAATTCATACAATGCTCCCTTAACCCTTCACGTGAAGTTTCACGGCAAGACAACTCATT
*
17112315 TTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA
391 TTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGA
*
17112380 GTTTTGCCACCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAACTAAG
456 GTTTTGCAACCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAACTAAG
*
17112445 CTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTATTTCAGACACTTT
521 CTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCATTTCAGACACTTT
*
17112510 AATGGCTACTGGCGGCAAACCTGTAAAATCTCAAATGCACTTTAAGGTAGTGTGAGTTCTCAAGG
586 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCACTTTAAGGTAGTGTGAGTTCTCAAGG
*
17112575 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
651 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGC
* *
17112640 ACAGCCGCCCCAGCCCCCCGATCGTCGAAACCCTAATGCCGTCGGTCAGGTTCTCCAGTGATGCT
716 ACAGCCGCCCCAGCCCCCCGATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCTCCAGCGATGCT
** * ** *
17112705 CCGGCGATGGTGCCCCGGGAAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
781 CCAACGATGGTGCCCCGGCAAAGAAAAATACGGCACCAGCAAATGCCCGAGCCCAGCATGTGCTG
* * *
17112770 TCGCAACCCTCGGTCCGATCCGATCTTAGA-TTAGGAATGAACTCCGTATG
846 CCACAACCCTCAGTCCGATCCGATCTTAGACTT-GGAATGAACTCCGTATG
* *
17112820 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGTG-TGCTCAA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTACG-GACGCTCAA
* *
17112884 CTGGCCAGAGGGGCGGGATGC-CTAAGCCGGGGATC-GATCGGGTCCCCCTCTACGTGCTGTCAA
65 CCGGCCAGAGGGACGGGATGCAC-AAGCCGGGGATCGGAT-GGGTCCCCCTCTACGTGCTGTCAA
* * * * ** *
17112947 TCCTACTGTCGCAACCCTCGGTTCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
128 TCCTACTGCCACAACCCTCGATCCAATCCAATCTTACACTGGGAATGAACTCCGTATGCCTAAGC
* * * * *
17113012 CAACGGACGAAATGAGCGGGCGGGCGGGCGAGCACCACGTCGGCCAAAGAGACGGGTTGCGCAAG
193 CAACCGACGAAACGAGCGGGCGGGC--AC--GCACCACGTCGGCCAAAGAGACGGGATGCACAAG
* *
17113077 CCGTGGATCGATAG-GATGGT-TGGTGGGTTTAGGCACATCTTCATATTT-T-TGCATGCCAATG
254 CCGTGGATCGATAGTG-TGGTAT-GTAGGTTTAGGCACAACTTCATATTTCTATG--TGCCAATG
*
17113138 CCATTTCTATGGCTTGTAAATTCATACAATGCTCTCTTAACCC-T-ACGTGAAGTTTCACGGCAA
315 CCATTTCTATGGCTTGTAAATTCATACAATGCTCCCTTAACCCTTCACGTGAAGTTTCACGGCAA
*
17113201 GACAACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTT
380 GACAACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTT
*
17113266 TTT-GGAAGGAGTTTTGGAACCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
445 TTTCGGAAGGAGTTTTGCAACCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* * *
17113330 AAA-ACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
510 AAACA-ACTAAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-CCCA
* *
17113394 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GTGGGT
573 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCACTTTAAGGT-AGT
* *
17113458 GTGAGTTCTCTAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCA
637 GTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCA
* * * *
17113523 CATATCATGTGCGCACA-CC-CCCCTGGCCCCCCCGATCGTTGGAACCCCAATGCCGTCGGTCAG
702 CACATCATGTGCGCACAGCCGCCCC-AG-CCCCCCGATCGTCGAAACCCCAATGCCGTCGGTCAG
* *
17113586 GTTCTCC-GACGATGCTCCAATGATGGTGCCCTGGCAAAGAAAAATACGGCACCAGCAAATGCCC
765 GTTCTCCAG-CGATGCTCCAACGATGGTGCCCCGGCAAAGAAAAATACGGCACCAGCAAATGCCC
17113650 GAGCCCAGCATGTGCTGCCACAACCCTCAGTCCGATCCGATCTTAGACTTGGAATGAACTCCGTA
829 GAGCCCAGCATGTGCTGCCACAACCCTCAGTCCGATCCGATCTTAGACTTGGAATGAACTCCGTA
17113715 TG
894 TG
17113717 C
1 C
17113718 CTAACTCAAC
Statistics
Matches: 811, Mismatches: 69, Indels: 34
0.89 0.08 0.04
Matches are distributed among these distances:
894 3 0.00
895 192 0.24
896 120 0.15
897 372 0.46
898 6 0.01
899 118 0.15
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (895 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTACGGACGCTCAAC
CGGCCAGAGGGACGGGATGCACAAGCCGGGGATCGGATGGGTCCCCCTCTACGTGCTGTCAATCC
TACTGCCACAACCCTCGATCCAATCCAATCTTACACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGGCACGCACCACGTCGGCCAAAGAGACGGGATGCACAAGCCGTGGA
TCGATAGTGTGGTATGTAGGTTTAGGCACAACTTCATATTTCTATGTGCCAATGCCATTTCTATG
GCTTGTAAATTCATACAATGCTCCCTTAACCCTTCACGTGAAGTTTCACGGCAAGACAACTCATT
TTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGA
GTTTTGCAACCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAACTAAG
CTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCATTTCAGACACTTT
AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCACTTTAAGGTAGTGTGAGTTCTCAAGG
TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGC
ACAGCCGCCCCAGCCCCCCGATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCTCCAGCGATGCT
CCAACGATGGTGCCCCGGCAAAGAAAAATACGGCACCAGCAAATGCCCGAGCCCAGCATGTGCTG
CCACAACCCTCAGTCCGATCCGATCTTAGACTTGGAATGAACTCCGTATG
Found at i:17115042 original size:26 final size:26
Alignment explanation
Indices: 17115006--17115057 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
17114996 TAGTCCAATT
17115006 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
17115032 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
17115058 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:17116115 original size:26 final size:26
Alignment explanation
Indices: 17116076--17116128 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17116066 CCGGTCCGAT
*
17116076 CTTAGACCGAGAATGAACTTCGTATG
1 CTTAGACCGAGAATGAACTCCGTATG
* *
17116102 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACCGAGAATGAACTCCGTATG
17116128 C
1 C
17116129 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACCGAGAATGAACTCCGTATG
Found at i:17117001 original size:26 final size:26
Alignment explanation
Indices: 17116972--17117024 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17116962 TCGATCCGAT
17116972 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
17116998 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17117024 C
1 C
17117025 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17117218 original size:896 final size:888
Alignment explanation
Indices: 17115186--17117912 Score: 3633
Period size: 896 Copynumber: 3.0 Consensus size: 888
17115176 AGTCCGGTTT
** * * *
17115186 GATCTTAGACCGGGAATGAACTTTGCATGCTTATACTGGGGATGAACTCCGTATGCCTAAGTCAA
1 GATCTTAGACCGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* *
17115251 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGCATGCGCAAGCCGAGGATCTG
66 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-G
* * * *
17115316 CCAGGTCCTCCTCTATGTGCTGTCGATCCTGCTGCTGCAAGCCT-TAGTTCGGTCCGATCTTAGA
130 CC-GGTCC-CCTCTATGTGCTGCCGATCCTGCTGCTGCAACCCTCGA-TCCGGTCCGATCTTAGA
* * * * *
17115380 CTGGGAATGAGCTCCGTATGCCTAAGCCAACTGA-TAAACGAGC--G-GGCGGGCGCTACGCTGG
192 CTGGGAATGAACTCCATATGCCTAAGCCAACTGACAAAACGAGCGGGCGGCGGGCACTACAC-GG
* *
17115441 CCAGAGAGACGGGGTGCGCAAGCCGTGGATCGATAGGGTGGTCGGTGGGTTTAGGCACATCTTCA
256 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
*
17115506 TATTTCTGTGTGCCAATGCCATTTTTATAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
321 TATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* *
17115571 CGTGAACTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTT
386 CGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTT
* **
17115636 CGGGATTTTTTCAAATTTTTTCAAAAGGAG-TTTTGCCCCAAACTTGGTAGA--TGATCCTTGTA
451 CGGGATTTTTT-AAAATTTTTCGGAAGGAGTTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTA
* *
17115698 TTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTCCAAGGTTTTGTGACCATT
515 TTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
* * *
17115763 CGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAA
580 TGAAAAAAGTGTCCCCATTTCAGACATTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
* *
17115828 TGCTCTTTAAGGGGGTGTGAGTACTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
645 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* * * * * * *
17115893 GTACCAGCACCCATCGA-ACACCATGTGTGCACA-CCCCCTGGCCCCTCCGATCATCAGAACCCT
710 GTACTAGCACCCATC-ACACAACATGTGCGCACACCCCCCCGGCCCC-CCGATCGTCGGAACCCC
* * * * * * *
17115956 AATGCCGTCGGTCAAGTTCTCCGGCTATGCTCAT-GCGATGGTGCCCCGGTGAAGAAAAATACGG
773 AATACCGCCGGTCAGGTTCTCCGACGATGCTC-TGGCGAT-GTGCCCCGATGAAGAAAAATATGG
* * ** * *
17116020 CACCAGTAGATGCCCGATCTTAGCATGTGCTACCGTAACCCTCGGTCCGGTCC
836 CACCAGCAGATGCCCGAGCACAGCATGTGCTACCGTAACCCTTGGTCCGATCC
* *
17116073 GATCTTAGACCGAGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
1 GATCTTAGACCGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * *
17116138 CCCACGAAACGAGCATGC-GGCTGCTCAACCGGCTAGAGGGGCGGGATGCGCAAGCCGGGGATCG
66 CCCACGAAACGAGCGTGCGGGC-GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-
* * * * * *
17116202 GTCGGGTCCCCCTCTGTGTGCTGCCAATCCTGGTGCTGCAACCCTCGGTCCAGTCCGATCTTAGA
129 G-CCGGT-CCCCTCTATGTGCTGCCGATCCTGCTGCTGCAACCCTCGATCCGGTCCGATCTTAGA
* *
17116267 CTGGGAATGAACTCCATATGCCTAAGCCAA-TCGACAAAACGAACGGGCGGGCGGGCACTACACC
192 CTGGGAATGAACTCCATATGCCTAAGCCAACT-GACAAAACGAGCGGGC-GGCGGGCACTACACG
* * ** *
17116331 GACATGAGAGACGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAAACAAATCTT
255 GCCA-GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
17116396 CATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
319 CATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
*
17116461 CACGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTCTACGG
384 CACGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGG
* * * *
17116526 TTCGAGATTTTTTAAAATTATCTCGGAAGGAGTTTTTTCCCCAATCTTGGTAGACGTGATCCTTG
449 TTCGGGATTTTTTAAAATT-TTTCGGAAGGAGTTTTTGCCCCAAACTTGGTAGACGTGATCCTTG
* * *
17116591 TATTTTTTTTGGCATTCACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCA
513 TATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
* *
17116656 TTTGAAAAAAATGTCCCCATTTCAGACATTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCA
578 TTTGAAAAAAGTGTCCCCATTTCAGACATTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* * *
17116721 AATACTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGTTGAGGGATAGGGGGCCACTATAAGGGCC
643 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * *
17116786 AAGTACTAGCACCTATCACACATCATGTGCGCACACCCCCCCCGGTGCCCCCGATCGTCGGAACC
708 AAGTACTAGCACCCATCACACAACATGTGCGCACA-CCCCCCCGG-CCCCCCGATCGTCGGAACC
* * *
17116851 CCAATACCGCCGGTCAGGTTCTTCGACGATGCTCTGGCGATGTGCCCTGATGAAGAAAAATGTGG
771 CCAATACCGCCGGTCAGGTTCTCCGACGATGCTCTGGCGATGTGCCCCGATGAAGAAAAATATGG
* * *
17116916 CACCAGCACATTCCCGAGCACAGCATGTGCTACCGTAACCCTTGGTTCGATCC
836 CACCAGCAGATGCCCGAGCACAGCATGTGCTACCGTAACCCTTGGTCCGATCC
* * *
17116969 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAA
1 GATCTTAGACCGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* *
17117034 CCCGCGAAACGAGCGTGCGGGCGCTCAGCCGTCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA
66 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG-
* * * *
17117099 CCGCGTCCCCTTCTACGTGCTACCGATCCTACT-ATCGCAACCCTCGATCCGG-CTCGATCTTAG
130 CCG-GTCCCC-TCTATGTGCTGCCGATCCTGCTGCT-GCAACCCTCGATCCGGTC-CGATCTTAG
* * * *
17117162 ACTGGGAATGAACTCTATATGCCTAAGCCAACTGACGAAATGAGCGGGCTGGCGGGCACTACGTC
191 ACTGGGAATGAACTCCATATGCCTAAGCCAACTGACAAAACGAGCGGGC-GGCGGGCACTAC-AC
**
17117227 GGCCAGAGAGACAAGATGCGCAAG--GTAGGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
254 GGCCAGAGAGACGGGATGCGCAAGCCGT--GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* * * *
17117290 TTCATATTTCTGTGTGCTAATGCCATTTTTACGGCTTGAAAATTCATACTATGGTCCCTTAAGCC
317 TTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * *
17117355 TTCACATGAAGTTACATGGCAAGACAACTTGTTTTATGGCAAGACAACTTGTTTTCTATTTTTCA
382 TTCACGTGAAGTTTCATGGCAAG---A--TG----A---C---TC-A----TTTTCTATTTTTCA
* * * *
17117420 CGATTTTTAAAACTTTTTACGATTCGGGA-TTTTTAAAACTTTTTTGGAAGGA-TTTTTGGCCCC
427 TGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAA-TTTTTCGGAAGGAGTTTTT-GCCCC
17117483 AAACTTGGTAGACGTGATCCTTGTA-TTTTAGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
490 AAACTTGGTAGACGTGATCCTTGTATTTTTA-TTGGCATGCACAAAAAAATTCAGCTAAAAACTC
17117547 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACATTTTAATGGCTAC
554 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACATTTTAATGGCTAC
* *
17117612 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGAGTGAGTTCTCGAGGTTTGATGAG
619 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
*
17117677 GGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACAACATGTGCGCACACCCCCC
684 GGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCACACAACATGTGCGCACACCCCCC
* * * *
17117742 CAGCCCCCCCGATCG-CTGGAACCCCAATACTGCTGGTCAGGTTCTCCGACGATACTCTGGCGAT
749 C-GGCCCCCCGATCGTC-GGAACCCCAATACCGCCGGTCAGGTTCTCCGACGATGCTCTGGCGAT
* * * * *
17117806 GTGCCCCGACGAAGAAAAATATGGCACCAGCAGATGCCCGAGCCCAGCATGTGCTGCGGCAACCC
812 GTGCCCCGATGAAGAAAAATATGGCACCAGCAGATGCCCGAGCACAGCATGTGCTACCGTAACCC
*
17117871 TTGGTCCAATCC
877 TTGGTCCGATCC
* *
17117883 GATCTTAGACTGGAAATGAACTCCGTATGC
1 GATCTTAGACCGGGAATGAACTCCGTATGC
17117913 CTAAGTCAAC
Statistics
Matches: 1615, Mismatches: 171, Indels: 81
0.87 0.09 0.04
Matches are distributed among these distances:
886 4 0.00
887 193 0.12
888 10 0.01
890 1 0.00
891 8 0.00
892 213 0.13
893 19 0.01
894 3 0.00
895 227 0.14
896 405 0.25
897 60 0.04
898 3 0.00
899 1 0.00
901 2 0.00
905 1 0.00
908 1 0.00
911 1 0.00
912 1 0.00
913 1 0.00
914 164 0.10
915 257 0.16
916 40 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (888 bp):
GATCTTAGACCGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGC
CGGTCCCCTCTATGTGCTGCCGATCCTGCTGCTGCAACCCTCGATCCGGTCCGATCTTAGACTGG
GAATGAACTCCATATGCCTAAGCCAACTGACAAAACGAGCGGGCGGCGGGCACTACACGGCCAGA
GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
CTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
AGTTTCATGGCAAGATGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGA
TTTTTTAAAATTTTTCGGAAGGAGTTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTA
TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
AAGTGTCCCCATTTCAGACATTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTA
GCACCCATCACACAACATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATACCGC
CGGTCAGGTTCTCCGACGATGCTCTGGCGATGTGCCCCGATGAAGAAAAATATGGCACCAGCAGA
TGCCCGAGCACAGCATGTGCTACCGTAACCCTTGGTCCGATCC
Found at i:17117395 original size:20 final size:20
Alignment explanation
Indices: 17117370--17117409 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
17117360 ATGAAGTTAC
17117370 ATGGCAAGACAACTTGTTTT
1 ATGGCAAGACAACTTGTTTT
17117390 ATGGCAAGACAACTTGTTTT
1 ATGGCAAGACAACTTGTTTT
17117410 CTATTTTTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.35
Consensus pattern (20 bp):
ATGGCAAGACAACTTGTTTT
Found at i:17118579 original size:26 final size:26
Alignment explanation
Indices: 17118550--17118602 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17118540 CTGGTCTGAT
*
17118550 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
17118576 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
17118602 C
1 C
17118603 CTATGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:17120195 original size:895 final size:894
Alignment explanation
Indices: 17117996--17120411 Score: 3293
Period size: 896 Copynumber: 2.7 Consensus size: 894
17117986 ATAGGGTGGT
* *
17117996 CCATTTTTATGGCTTGAAAATTCATACTATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
1 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * * *
17118061 GACGACTCGTTTTCTATTTTTCACGATTTTCAAAACATTTTGCGGTTTGAGATTTGTTAAAATTT
66 GACGACTCGTTTTTTATTTTTCACGATTTTCAAAACTTTTTGCAGTTCGAGATTTTTTAAAATTT
* * * * *
17118126 TTTCGAAAGGAGTTTTGGTCCCAAACTTGGTAAACGTGATCCTCGTAATTTTGTTGGCATGGACA
131 TTTCGGAAGGAGTTTTGG-CCCCAACTTGGTAGACGTGATCCTTGTAATTTTGTTGGCATGCACA
*
17118191 AAAAAATTCACCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
195 AAAAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
*
17118256 TTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
260 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
17118321 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG-CAGAGTACCAGCACCCATCGC
325 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA-AGTACCAGCACCCATCGC
* * * *
17118385 ACATCATGTGCGCACACCCCCCGACCCCCTCGATCGCCGAAACCCCAATGCCGTCGATCAGGTTC
389 ACATCATGTGCGCACACCCCCTG-CCCCCCCGATCGTCGAAACCCCAATGCCGTCGGTCAGGTTC
* * * * * *
17118450 TCCAACGATGCTCCGGCGATGGTACCCCGGC-GAAGAAAAATACGACACCAACACATGCCCGAGC
453 TCC-ACGATGCTCTGACAATGGTGCCCCGTCAG-AGAAAAATACGACACCAGCACATGCCCGAGC
* * *
17118514 CCAGCATGTGCTACCCAACCCTCGGTCTGGTCTGATCTTAGATTGGGAATGAACTCTGTATGCTT
516 CCAGAATGTGCTACCCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * * **
17118579 AGACTGGGAATGAACTCTGTATGCCTATGTCAACCCACGAAACGAGCATGCGGACGCTCAACCGG
581 AGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCATACGGACGCTCAACCAA
** ** * * *
17118644 CCAGAGTGGCAGGATGCTTAATTCGGGGATCAACCGGGTCCCCTTTGCATGCTGCCAATCCTGCT
646 CCAGAGTGGCAGGATGCGCAAGCCGGGGATCAACCGGGTCCCCTCTACATGCTGCCAATCCTACT
* * * *
17118709 GCCACAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGA
711 ACCACAACCATCGGTCTGATCCGATCTTAGACTGAGAATGAACTCCATATGCCTAAGCCAACCAA
***
17118774 CGAAACGAGCGGGCAGACGGGTGGGCGGGCACTACGTTGGCCAGAGAGACGGGATGCGCAAGCCA
776 CGAAACGAGCGGG-AGAC--G-GGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCA
* * *
17118839 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTGTGCATGCCAATG
837 TGAATCGATAGGGTGGCAGGTGGGTTTAGGCACATCTTCACATTTGTGCATGCCAATG
* *
17118897 CCATTTTTGTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAACTTTCATGGCAA
1 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * *
17118962 GACGACTCGTTTTTTATTTTTCACGATTTTCAAAACTTTTTACAATTCGAGACTTTTTAAAATTT
66 GACGACTCGTTTTTTATTTTTCACGATTTTCAAAACTTTTTGCAGTTCGAGATTTTTTAAAATTT
* * * * * *
17119027 CTTCAGAAGGAGTTTTGG-CCC--C-TGGTTGACGTGATCCTTTTATTTTTGTTGGCATGCATAA
131 TTTCGGAAGGAGTTTTGGCCCCAACTTGGTAGACGTGATCCTTGTAATTTTGTTGGCATGCACAA
*
17119088 AAAAATTCAACTAGAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
196 AAAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
** *
17119153 TCAGACACTTTAATGGCTACTAACAGCAAACCTGTAAAATCTCAAATACTCTTTAAGGGGGTGTG
261 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
17119218 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCACCACCCATCACAC
326 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
*** ** *
17119283 ATCATGCATGCACACCCCCTGGCCCCCCCGATCGTCGAAACCCCAATGCCACCGGTCACGTTCTC
391 ATCATGTGCGCACACCCCCT-GCCCCCCCGATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCTC
* *
17119348 CGACGATGCTCTGACAATGGTGCCCCGTCAGAGAAAAATGCGACACCAGCACATGCCTGAGCCCA
455 C-ACGATGCTCTGACAATGGTGCCCCGTCAGAGAAAAATACGACACCAGCACATGCCCGAGCCCA
* * * * *
17119413 GAATGTGCTGCCGTAAGCCTCGGTCTGGTCTAATCTTAGACTGGGAATGAACTCCATATGCTTAG
519 GAATGTGCTACC-CAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * *
17119478 ACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAATCAAGCGTACAGG-CGCTCAGCCAAC
583 ACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCATAC-GGACGCTCAACCAAC
* * * *
17119542 CAGAAG-GGCAGGATGCGCAAGCCGGGGATCGATCGAGTTCCCCTCTACATGCTGCCGATCCTAC
647 CAG-AGTGGCAGGATGCGCAAGCCGGGGATCAACCG-GGTCCCCTCTACATGCTGCCAATCCTAC
* * * * *
17119606 TACCGCAACCATCGCT-TCGGTCTGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACC
710 TACCACAACCATCGGTCT-GATCCGATCTTAGACTGAGAATGAACTCCATATGCCTAAGCCAACC
* * * *
17119670 AATGAAACGAG-TGG-G-C-GGGCGGGCACTACACCGGCCAGAGAGATGGGATGCGCAAGCCGTG
774 AACGAAACGAGCGGGAGACGGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCATG
*
17119731 AATCGATAGGGTGGCAGGTGGGTTTAGGCACATCTTCACATTTTTGCATGCCAATG
839 AATCGATAGGGTGGCAGGTGGGTTTAGGCACATCTTCACATTTGTGCATGCCAATG
* *
17119787 CCTTTTTTATGGCTTGTAAATTCATACAAAGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
1 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* ** * *
17119852 GACGACTCATTTTTTATTTTTCACGATTTTTGAAACTTTTTGCAGTTCGGGGTTTTTTAAAATTT
66 GACGACTCGTTTTTTATTTTTCACGATTTTCAAAACTTTTTGCAGTTCGAGATTTTTTAAAATTT
* * *
17119917 TTTGGGAAGGACTTTTGGCCCCCAACTTGGTAGATGTGATCCTTGTAATTTTGTTGGCATGCACA
131 TTTCGGAAGGAGTTTTGG-CCCCAACTTGGTAGACGTGATCCTTGTAATTTTGTTGGCATGCACA
* * *
17119982 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAATGTGTCCCTAT
195 AAAAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * *
17120047 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAAACTCAAATGCTCTTTAACGGGGTGT
260 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * *
17120112 GAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGGACCAGCAGCCATCGCA
325 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
** * * *
17120177 CATCATGTGCGCACACCCCCAT-CCCCCGTGATCATCGATACCCCAATACCGTCGGTCAGGTTCT
390 CATCATGTGCGCACACCCCC-TGCCCCCCCGATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCT
* * * * *
17120241 CCAGCGGTGCT-TCA-ATGATGGTGCCCCGATGA-AGAAAAATACGGCACCAGCACATACCCGAG
454 CCA-CGATGCTCTGACA--ATGGTGCCCCG-TCAGAGAAAAATACGACACCAGCACATGCCCGAG
* * * ** *
17120303 CCCA-ATATGTGCTACCCCAACCCTCAGTCCGGTCCGATCTTAGACTCAGAATGAACTCCGTATA
515 CCCAGA-ATGTGCTA-CCCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* *
17120367 TTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
578 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAA
17120412 TGAGCGTGCG
Statistics
Matches: 1330, Mismatches: 165, Indels: 47
0.86 0.11 0.03
Matches are distributed among these distances:
890 224 0.17
892 4 0.00
893 4 0.00
894 171 0.13
895 235 0.18
896 334 0.25
897 133 0.10
898 90 0.07
899 2 0.00
901 133 0.10
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.26
Consensus pattern (894 bp):
CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
GACGACTCGTTTTTTATTTTTCACGATTTTCAAAACTTTTTGCAGTTCGAGATTTTTTAAAATTT
TTTCGGAAGGAGTTTTGGCCCCAACTTGGTAGACGTGATCCTTGTAATTTTGTTGGCATGCACAA
AAAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
ATCATGTGCGCACACCCCCTGCCCCCCCGATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCTCC
ACGATGCTCTGACAATGGTGCCCCGTCAGAGAAAAATACGACACCAGCACATGCCCGAGCCCAGA
ATGTGCTACCCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
GGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCATACGGACGCTCAACCAACCAGA
GTGGCAGGATGCGCAAGCCGGGGATCAACCGGGTCCCCTCTACATGCTGCCAATCCTACTACCAC
AACCATCGGTCTGATCCGATCTTAGACTGAGAATGAACTCCATATGCCTAAGCCAACCAACGAAA
CGAGCGGGAGACGGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCATGAATCGAT
AGGGTGGCAGGTGGGTTTAGGCACATCTTCACATTTGTGCATGCCAATG
Found at i:17120371 original size:26 final size:26
Alignment explanation
Indices: 17120342--17120391 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
17120332 CGGTCCGATC
17120342 TTAGACTCAGAATGAACTCCGTATAT
1 TTAGACTCAGAATGAACTCCGTATAT
**
17120368 TTAGACTGGGAATGAACTCCGTAT
1 TTAGACTCAGAATGAACTCCGTAT
17120392 GCCTAAGTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30
Consensus pattern (26 bp):
TTAGACTCAGAATGAACTCCGTATAT
Found at i:17120461 original size:26 final size:26
Alignment explanation
Indices: 17120431--17120486 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
17120421 GGGCGTTCAA
17120431 CCGGCGAGAGGGGCGGGATGCGCAAG
1 CCGGCGAGAGGGGCGGGATGCGCAAG
17120457 CCGGCGAGAGGGGCGGGATGCGCAAG
1 CCGGCGAGAGGGGCGGGATGCGCAAG
17120483 CCGG
1 CCGG
17120487 TGATCGGCCG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.18, C:0.25, G:0.54, T:0.04
Consensus pattern (26 bp):
CCGGCGAGAGGGGCGGGATGCGCAAG
Found at i:17122112 original size:26 final size:26
Alignment explanation
Indices: 17122083--17122138 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
17122073 CCGGTCCTAT
17122083 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
17122109 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17122135 CTTA
1 CTTA
17122139 AGTCAACCCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17123000 original size:26 final size:26
Alignment explanation
Indices: 17122971--17123026 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
17122961 CCGATCCTAT
17122971 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17122997 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17123023 CTTA
1 CTTA
17123027 AGTCAACCCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17123889 original size:26 final size:26
Alignment explanation
Indices: 17123860--17123912 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17123850 CCGATCCTAT
17123860 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17123886 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17123912 C
1 C
17123913 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17124792 original size:26 final size:26
Alignment explanation
Indices: 17124763--17124815 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17124753 CCGGTCCTAT
17124763 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17124789 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17124815 C
1 C
17124816 CTCAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17125696 original size:26 final size:26
Alignment explanation
Indices: 17125660--17125712 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17125650 CCAGTCCTAT
*
17125660 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17125686 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17125712 C
1 C
17125713 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17126573 original size:26 final size:26
Alignment explanation
Indices: 17126544--17126595 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
17126534 CCGGTCCTAT
17126544 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17126570 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17126596 GCTAAGTCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17127305 original size:901 final size:896
Alignment explanation
Indices: 17126105--17130768 Score: 6766
Period size: 901 Copynumber: 5.2 Consensus size: 896
17126095 TTTCTCACAA
* * *
17126105 TTTTCAAAACTTTTTTTGGAAGGTGTTTT-GCCCCAAACATGGTAGACATGATCCTTGTATTTTT
1 TTTTTAAAA-TTTTTTCGGAAGGTGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTT
* * *
17126169 TTTGGCATGCAAAAAAAAATTCAGCTAAAAATTCTAAGTTTAGAAGATTTTGTGACCATTTGAAA
65 TTTGGCATGCACAAAAAAATTCAGCTAAAAACTCTAAGTTTACAAGATTTTGTGACCATTTGAAA
17126234 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCGC
130 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCGC
*
17126299 TTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACC
195 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACC
* * *
17126364 AGCACCCATCGTACCTCATGTGCGCACACCACCACCGGCCCCCACGATCGTCGAAACCCCAATGC
260 AGCACCCATCGTACATCATGTGCGCACACC-CCCCCGGCCCCC-CGATCGTCGGAACCCCAATGC
* * *
17126429 CGCCGGTCGGGTTATCCGGTGATGCACCGATGATGGTA-CCCTAGCGAAGAAAAATGTAGCACCA
323 CGCCGGTCGGGTTCTCC-G-GATGC-CCGATGATGGTACCCCGA-CGAAGAAAAATGCAGCACCA
* * *
17126493 GCACATGGCCGAGCCCAGCATGTGCTGCCGTAACCATCGATCCGGTCCTATCTTAGACTGGGAAT
384 GCACATGGCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCTATCTTAGACTGGGAAT
*
17126558 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGGCTAAGTCAACCCACGAAACGAGCGTG
449 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* *
17126623 CGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGAGGATCGACCGGGTCCCCTTCTACG
514 CGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTACG
* * * *
17126688 TGCTGTCGATCCTGCTGCCGTAACCCTCGTTCCAGTCTGATCTTAGACTTGGAATGAACTTCATA
579 TGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTTGGAATGAACTTCATA
* *
17126753 TGCCTAAGCCAACCAACGAAACGAGCATGCGGGCGGGCGGGCACTGCGCCGACCAGAGAGACGGG
644 TGCCTAAGCCAACCAACGAAACGAGCATGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGG
* *
17126818 ATGCGCAACCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGC
709 ATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGC
*
17126883 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCAT
774 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
** *
17126948 GGCAAGACGACTCGTTCTCTATTTTTCGTAATTTTCAAAACTTTTTGTGGTTCAGGAT
839 GGCAAGACGACTCGTTCTCTATTTTTCACAATTTTCAAAACTTTTTGCGGTTCAGGAT
* * *
17127006 TTTTTAAAATTTTTTTGGAAGGTGTTTTAGCCCCAAACGTGGTAGACGTGATCCTTGTATTTTTT
1 TTTTTAAAATTTTTTCGGAAGGTGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTT
* *
17127071 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCTAAGTTTAGAAGATTTTCTGACCATTTGAAAA
66 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCTAAGTTTACAAGATTTTGTGACCATTTGAAAA
*
17127136 AAGTGTCCCCATTTCAGACACTTTAATGGGTACTGGCAGCAAACCTATAAAATCTCAAATGCGCT
131 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCGCT
* *
17127201 TTAAGGGAGCGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCA
196 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCA
*
17127266 GCACCCATCGTACATCATGTGCGCACACCCCCGCCGGCCCCCCCGATCGTCGAAACCCCAATGCC
261 GCACCCATCGTACATCATGTGCGCACACCCCC-CCGG-CCCCCCGATCGTCGGAACCCCAATGCC
* ** *
17127331 GTCGGTCGGGTTCTCCGACGATGCTCCGATGATGGTACCCCGGTGAAGAAAAATGTAGCACCAGC
324 GCCGGTCGGGTTCTCCG--GATGC-CCGATGATGGTACCCCGACGAAGAAAAATGCAGCACCAGC
* *
17127396 ACATGGCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCCTATCTTAGACTGGAAATGA
386 ACATGGCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCTATCTTAGACTGGGAATGA
* *
17127461 ACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTCAGTCAACCCACGAAACGAGCGTGCG
451 ACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
* * *
17127526 GGCGCTCAGCCGGCCTGAGGGGCAGGATGCGCAAGCCGAGGATCGACCGCGTCCCCCTCTACGTG
516 GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTACGTG
* * *
17127591 CTGCCGATCCTACTACCGCAACCCTCGATCCGGTCTGATCTTAGACTTGGAATGAACTTCATATG
581 CTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTTGGAATGAACTTCATATG
* * *
17127656 CCTAAGCCAACCAACGAAACGAGCATGTGGGCGAGCGGGCGGGCGGGCACGACGCCGACGAGAGA
646 CCTAAGCCAACCAACGAAACGAGCA--T------GCGGGCGGGCGGGCACTACGCCGGCCAGAGA
*
17127721 GACGGGATGCGCAAGCCATGGATGGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
703 GACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
* ** *
17127786 ACGTGCCAATGCCATTTTTATGGCTTGTAAATTAATACAATGGTCTGTTAAGCCTTCACATGAAG
768 ACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
*
17127851 TTTCATGGCAAGACGACTCGTTCTCTATTTTTCACAATTTTCAAAACTTTTTGCGGTTCAAGAT
833 TTTCATGGCAAGACGACTCGTTCTCTATTTTTCACAATTTTCAAAACTTTTTGCGGTTCAGGAT
17127915 TTTTTAAAATTTTTTCGGAAGGTGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTT
1 TTTTTAAAATTTTTTCGGAAGGTGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTT
* *
17127980 TTGGCATGCATAAAAAAATTTAGCTAAAAACTCTAAGTTTACAAGATTTTGTGACCATTTG-AAA
66 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCTAAGTTTACAAGATTTTGTGACCATTTGAAAA
* *
17128044 AAGTGTCCCCATTTCAGACACTGTAATGGCTACTGGCAGCAAACCTATAAACTCTCAAATGCGCT
131 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCGCT
*
17128109 TTAAGGGGGTGTGAGTTCTCGAAGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCA
196 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCA
* **
17128174 GCACCCATCGTACATCATGTGCGCACACCCCCCCGGCCTACCCGATCACCGGAACCCCAATGCCG
261 GCACCCATCGTACATCATGTGCGCACACCCCCCCGGCC-CCCCGATCGTCGGAACCCCAATGCCG
* * ** * *
17128239 CTGGTCGGGTTCTCC-GA----C---GATGCTACCCCGGTGACGAAAAATGCAGCACTAGCACAT
325 CCGGTCGGGTTCTCCGGATGCCCGATGATGGTACCCCGACGAAGAAAAATGCAGCACCAGCACAT
* * *
17128296 GGCCGAGCCCAGCATGTGCTGCCGTAACCCTTGGTCCGATCCTATCTTAGACTGGGAATGAACTC
390 GGCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCTATCTTAGACTGGGAATGAACTC
** * *
17128361 TATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCCTGTGGGCG
455 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * * *
17128426 CTCAGCCGGCCATGAGGGGCGAGATGCACAAGTCGAGGATCGACCGGGTCTCCCTCTACGTGCTA
520 CTCAGCCGGCCA-GAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTACGTGCTG
* * *
17128491 CCGATCCTGCTGCCGCAGCCCTTGGCCCGGTCTGATCTTAGACTTGGAATGAACTTCATATGCCT
584 CCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTTGGAATGAACTTCATATGCCT
* * * **
17128556 AAGCCAACCAACGAAATGAGCATGCGGGCGGGCGGGAGGGCGGGCACTATGTCGGCCAGAGTTAC
649 AAGCCAACCAACGAAACGAGCAT----GCGGGC----GGGCGGGCACTACGCCGGCCAGAGAGAC
* * * * *
17128621 GAGATGCGCAACCCACGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCCTATTTCAACG
706 GGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACG
* *
17128686 TGCCAATGCAATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
771 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* *
17128751 CATGGCAAGACGACTCATTCTCTATTTCTCACAATTTTCAAAA------------C-----
836 CATGGCAAGACGACTCGTTCTCTATTTTTCACAATTTTCAAAACTTTTTGCGGTTCAGGAT
* *
17128795 ----T----TTTTTT-GGAAGGTGTTTTGGCCCTAAACATGGTAGACATGATCCTTGTATTTTTT
1 TTTTTAAAATTTTTTCGGAAGGTGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTT
* * **
17128851 TTGGCATGCACAAAAAAATTCAACTAAAAACTCTAAGTTTAGAAGATTTTGCAACCATTTGAAAA
66 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCTAAGTTTACAAGATTTTGTGACCATTTGAAAA
*
17128916 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAACCTATAAAATCTCAAATGCGCT
131 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCGCT
*
17128981 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAGGTACCA
196 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCA
* * *
17129046 GCACCCATCGTACATCATGTGCGGACACCCCTGCCGGCCCCCCCGATCGTCGAAACCCCAATGCC
261 GCACCCATCGTACATCATGTGCGCACACCCC-CCCGG-CCCCCCGATCGTCGGAACCCCAATGCC
* * * * * * *
17129111 GTCTGTCGGGTTCTCTGACGATGCTCCGATTATGGTACCCCGACAAAGAAAAATGTAGCAGCAGC
324 GCCGGTCGGGTTCTCCG--GATGC-CCGATGATGGTACCCCGACGAAGAAAAATGCAGCACCAGC
* *
17129176 ACATGGTCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCCTA---T---CT-----T--
386 ACATGGCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCTATCTTAGACTGGGAATGA
17129228 A----G-A----T----TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
451 ACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
* ** * *
17129280 GGCGTTCAGCCGGTAAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCTTCTACATG
516 GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTACGTG
* * * *
17129345 CTGTCGATCCTACTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTTGGAATGAACTTCATATG
581 CTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTTGGAATGAACTTCATATG
* * *
17129410 CCTAAGCCAACCGATGAAACGAGCATGCAGGTGGGCGGGCGGGCAGGC-ACTCTGCCAGCCAGAG
646 CCTAAGCCAACCAACGAAACGAGCATGC----GGGCGGGCGGGCA--CTA--C-GCCGGCCAGAG
17129474 AGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
702 AGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
* * *
17129539 TACGTGCCAATGCCATTTTTATGGTTTGTAAATTCATATAATGGTCCCTTAAGCCTTCACATGAA
767 TACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
*
17129604 GTTTCATGGCAAGACGACTCGTTCTCTCTTTTTCACAATTTTCAAAACTTTTTGCGGTTCAGGAT
832 GTTTCATGGCAAGACGACTCGTTCTCTATTTTTCACAATTTTCAAAACTTTTTGCGGTTCAGGAT
17129669 TTTTTAAAAGTTTTTT-GGAAGGTGTTTT-GCCCCAAACATGGTAGACGTGATCCTTGTATTTTT
1 TTTTTAAAA-TTTTTTCGGAAGGTGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTT
* * *
17129732 TTTGGCATGCACAAAAAAATTTAGCTAAAAACTCTAAGTTTACAAGATTCTGTGACCATTTCAAA
65 TTTGGCATGCACAAAAAAATTCAGCTAAAAACTCTAAGTTTACAAGATTTTGTGACCATTTGAAA
*
17129797 AAAGTGTCCCCATTTCAGACACTTTAATGGGTACTGGCAGCAAACCTATAAAATCTCAAATGCGC
130 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCGC
*
17129862 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAGGTACC
195 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACC
* *
17129927 AGCACCCATCGTACATCATCTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCACAATGCC
260 AGCACCCATCGTACATCATGTGCGCACACCCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCC
* *
17129991 ACCGGTCGGGTTCTCCGACGATGCTCGATGATGGTA-CCCG-CGAAGAAAAATGCAGCACCAGCA
324 GCCGGTCGGGTTCTCCG--GATGCCCGATGATGGTACCCCGACGAAGAAAAATGCAGCACCAGCA
* ** * *
17130054 CATGGTCGAGCCCAGCATGTGCTATCGCAACCCTCGGTCCGGTCTTATCTTAGATTGGGAATGAA
387 CATGGCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCTATCTTAGACTGGGAATGAA
* *
17130119 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGGAACGAGCGTGTGG
452 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * * *
17130184 GCGCTCAGCTGGCCAGAGGGGCGGGATCCACAAGCCGAGGATCGATCGGGTCCCCCTCTACGTGC
517 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTACGTGC
* *
17130249 TGCCGATCCTGCTGCCACAACCCTCGGTCCAGTCTGATCTTAGACTTGGAATGAACTTCATATGC
582 TGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTTGGAATGAACTTCATATGC
* ** *
17130314 CTAAGCCAACCGACGAAACGAGCATGCAGGCAGGCGGGCGGGCAGGCACTACAACGGTCAGAGAG
647 CTAAGCCAACCAACGAAACGAGCATGC--G--GGCGGGC--G--GGCACTACGCCGGCCAGAGAG
17130379 ACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA
704 ACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA
17130444 CGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
769 CGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
* * *
17130509 TTCATGGCAAGATGACTCGTTCTCTATTTTTCACAATTTTCAAAACTTTTTGTGGTTCAAGAT
834 TTCATGGCAAGACGACTCGTTCTCTATTTTTCACAATTTTCAAAACTTTTTGCGGTTCAGGAT
*
17130572 TTTTTAAAATTTTTTCGGAAGGTGTTTTGGCCCCAAACGTGGTAGACGTGATCCTTGTATTTTTT
1 TTTTTAAAATTTTTTCGGAAGGTGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTT
* *
17130637 TTGGCATGCACAAACAAATTCAACTAAAAACTCTAAGTTTACAAGATTTTGTGACCATTTGAAAA
66 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCTAAGTTTACAAGATTTTGTGACCATTTGAAAA
*
17130702 AAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTATAAAATCTCAAATGCGCT
131 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCGCT
17130767 TT
196 TT
17130769 TTTGTGGTTC
Statistics
Matches: 3394, Mismatches: 266, Indels: 203
0.88 0.07 0.05
Matches are distributed among these distances:
853 11 0.00
854 1 0.00
855 1 0.00
857 298 0.09
858 59 0.02
862 1 0.00
866 1 0.00
869 1 0.00
871 103 0.03
872 164 0.05
873 38 0.01
874 2 0.00
876 3 0.00
877 65 0.02
878 7 0.00
879 10 0.00
880 51 0.02
881 5 0.00
882 245 0.07
883 19 0.01
884 69 0.02
885 1 0.00
888 1 0.00
890 1 0.00
893 9 0.00
894 1 0.00
895 2 0.00
896 167 0.05
897 305 0.09
899 2 0.00
900 22 0.01
901 603 0.18
902 14 0.00
903 412 0.12
904 163 0.05
905 2 0.00
906 3 0.00
907 43 0.01
908 159 0.05
909 330 0.10
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (896 bp):
TTTTTAAAATTTTTTCGGAAGGTGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTT
TTGGCATGCACAAAAAAATTCAGCTAAAAACTCTAAGTTTACAAGATTTTGTGACCATTTGAAAA
AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCGCT
TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCA
GCACCCATCGTACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGC
CGGTCGGGTTCTCCGGATGCCCGATGATGGTACCCCGACGAAGAAAAATGCAGCACCAGCACATG
GCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCTATCTTAGACTGGGAATGAACTCC
GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
TCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTACGTGCTGCC
GATCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTTGGAATGAACTTCATATGCCTAA
GCCAACCAACGAAACGAGCATGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
AGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
CGACTCGTTCTCTATTTTTCACAATTTTCAAAACTTTTTGCGGTTCAGGAT
Found at i:17127485 original size:26 final size:26
Alignment explanation
Indices: 17127445--17127497 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17127435 CCGGTCCTAT
*
17127445 CTTAGACTGGAAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
*
17127471 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
17127497 C
1 C
17127498 CTCAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:17128392 original size:26 final size:26
Alignment explanation
Indices: 17128341--17128393 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17128331 CCGATCCTAT
*
17128341 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17128367 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17128393 C
1 C
17128394 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17130131 original size:26 final size:26
Alignment explanation
Indices: 17130102--17130154 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17130092 CCGGTCTTAT
*
17130102 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17130128 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17130154 C
1 C
17130155 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17130929 original size:212 final size:212
Alignment explanation
Indices: 17130555--17130980 Score: 816
Period size: 212 Copynumber: 2.0 Consensus size: 212
17130545 TTTTCAAAAC
*
17130555 TTTTTGTGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGTGTTTTGGCCCCAAACGTGGTAGACG
1 TTTTTGTGGTTCAAGATTTTTTAAAATTTTTTCAGAAGGTGTTTTGGCCCCAAACGTGGTAGACG
17130620 TGATCCTTGTATTTTTTTTGGCATGCACAAACAAATTCAACTAAAAACTCTAAGTTTACAAGATT
66 TGATCCTTGTATTTTTTTTGGCATGCACAAACAAATTCAACTAAAAACTCTAAGTTTACAAGATT
* *
17130685 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTAT
131 TTGTGACCATTTGAAAAAAGTGTCCACATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTAT
17130750 AAAATCTCAAATGCGCT
196 AAAATCTCAAATGCGCT
*
17130767 TTTTTGTGGTTCAGGATTTTTTAAAATTTTTTCAGAAGGTGTTTTGGCCCCAAACGTGGTAGACG
1 TTTTTGTGGTTCAAGATTTTTTAAAATTTTTTCAGAAGGTGTTTTGGCCCCAAACGTGGTAGACG
17130832 TGATCCTTGTATTTTTTTTGGCATGCACAAACAAATTCAACTAAAAACTCTAAGTTTACAAGATT
66 TGATCCTTGTATTTTTTTTGGCATGCACAAACAAATTCAACTAAAAACTCTAAGTTTACAAGATT
17130897 TTGTGACCATTTGAAAAAAGTGTCCACATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTAT
131 TTGTGACCATTTGAAAAAAGTGTCCACATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTAT
17130962 AAAATCTCAAATGCGCT
196 AAAATCTCAAATGCGCT
17130979 TT
1 TT
17130981 AAGGGGGTGT
Statistics
Matches: 210, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
212 210 1.00
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.35
Consensus pattern (212 bp):
TTTTTGTGGTTCAAGATTTTTTAAAATTTTTTCAGAAGGTGTTTTGGCCCCAAACGTGGTAGACG
TGATCCTTGTATTTTTTTTGGCATGCACAAACAAATTCAACTAAAAACTCTAAGTTTACAAGATT
TTGTGACCATTTGAAAAAAGTGTCCACATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTAT
AAAATCTCAAATGCGCT
Found at i:17131249 original size:26 final size:26
Alignment explanation
Indices: 17131220--17131272 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17131210 CCGATCCTAT
17131220 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17131246 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17131272 C
1 C
17131273 CTCAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17132152 original size:26 final size:26
Alignment explanation
Indices: 17132123--17132175 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17132113 CCGGTCCTAT
**
17132123 CTTAGACTGGGAATGCTCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17132149 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17132175 C
1 C
17132176 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17132831 original size:905 final size:900
Alignment explanation
Indices: 17130767--17133247 Score: 3491
Period size: 903 Copynumber: 2.7 Consensus size: 900
17130757 CAAATGCGCT
* * *** ** *
17130767 TTTTTGTGGTTCAGGATTTTTTAAA-ATTTTTTCAGAAGGTGTTTTGGCC-CCAAACGTGGTAGA
1 TTTTTGCGGTTCAGGATTTTTTAAATATTTTTT-GGAAGGAAATTTGGCCGTAAAACATGGTAGA
* *
17130830 CGTGATCCTTGTATTTTTTTTGGCATGCACAAACAAATTCAACTAAAAACTCTAAGTTTACAAGA
65 CGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAACTAAAAACTCTAAGTTTACAAGA
*
17130895 TTTTGTGACCATTTGAAAAAAGTGTCCACATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
130 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
*
17130960 ATAAAATCTCAAATGCGCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCTA
195 ATAAAATCTCAAATGCGCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
*
17131025 ATATAAAGGCCAAGTACCAGCACCCATCGTACATCACGTGCGCACACCCCCC-GGCCCCCCCGAT
260 ATATAAAGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCTGG-CCCCCCGAT
* * ** * *
17131089 CGCCGGAACCCCAATGCCGCCGGTCGGGTTCTCCGGCGATGCTCTGGTGATGGTA-CCCGGCAAA
324 CGTCGGAACCCCAATGCCGCCGGTCGGGTTCTCCGGCGATGCTCCGACGATGGTACCCCGACGAA
* *
17131153 GAAAAATGCAGCACCAGCAAATGGCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGATCCT
389 GAAAAATGCAGCACCAGCACATGGCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGGTCCT
*
17131218 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTCAGTCAAC
454 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * *
17131283 CCATGAAACGAGCGTGCGGGCGCTTAGTCGGCCAGAGGGGCGCGATGAGCAAGTC-GAGGATCGA
519 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCG-GATG-GCAAGTCAG-GGATCGA
* * *
17131347 CCGGGTCCCCCTCTACGTGCTGTCAATCCTGCTGCTACAACCCTCGGTCCGGTCTGATCTTAGAC
581 CCGGGTCCCCCTCTACGTGCTGCCAATCCTGCTGCTACAACCCTCAGTCAGGTCTGATCTTAGAC
*** * * *
17131412 TTGGAATGAACTTTATATGCCTAAGCCAACCGGTGAAACGAGCGGGCGGCGGGCGGGCGGGCACT
646 -TGGAATGAACTCCGTATGCCTAAGCCAACAGGCGAAACGAGCGAGCGGCGGGCGGGCGGGCACT
* * *
17131477 ATGCCGGCCAAAGAAACTGGATGCACAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
710 ATGCCGACCAAAGAAACGGGATGCACAAGCCATGAATCGATAGGGTGGTAGGTGGGTTTAGGCAC
*
17131542 ATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
775 ATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
*
17131607 GCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCAATTTTTCACAATTTTCAAAAC
840 CCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCAATTTTTCACAATTTTCAAAAC
* * * *
17131668 TTTTTGTGGTTCAGGATTTTTTAAATTTTTTTTGGAAGGTATTTTGGCCGTAAAA-ATGGTAGAC
1 TTTTTGCGGTTCAGGATTTTTTAAATATTTTTTGGAAGGAAATTTGGCCGTAAAACATGGTAGAC
* * * *
17131732 GTGATCCTTGTATTTTTGTTGGCATGAACAAAAAAATTCAGCTAAAAACTCTAAGTTTGCAAGAT
66 GTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAACTAAAAACTCTAAGTTTACAAGAT
* *
17131797 TTTGTGACTATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCCGCAAACCTA
131 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTA
* *
17131862 TAAAATCTCAAATGCGCTTTAAGGGGGTGTGAGTTCTCGAGGTTTCATGAGGGATAGCGGGCCAA
196 TAAAATCTCAAATGCGCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * *
17131927 TATAAAGGCCAAGTACCCGCATCCATCATACATCATGTGCGCACACCCCCCCTGGCCCCCCGATC
261 TATAAAGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACA-CCCCCCTGGCCCCCCGATC
* *
17131992 GTCAGAACCCCAATGCCACCGGTCGGGTTCTCCGGCGATGCTCCGACGATGGTACCCCGACGAAG
325 GTCGGAACCCCAATGCCGCCGGTCGGGTTCTCCGGCGATGCTCCGACGATGGTACCCCGACGAAG
* * * *
17132057 AAAAATGCAGCACCAGCACATGGCTGAGCCTAGAATGTGCTGCCGCAACCCTCGGTCCGGTCCTA
390 AAAAATGCAGCACCAGCACATGGCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGGTCCTA
**
17132122 TCTTAGACTGGGAATGCTCTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
455 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* *
17132187 TACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGGCAAGCCAGGGATCGACCG
520 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC-GGATGGCAAGTCAGGGATCGACCG
* * * * * *
17132252 GGTCCCCTTCTATGTGCTGCCAATCTTGCTACCACAACCCTCAGTCTGGT-TCGATCTTAGACTG
584 GGTCCCCCTCTACGTGCTGCCAATCCTGCTGCTACAACCCTCAGTCAGGTCT-GATCTTAGACTG
17132316 AGAATGAACTCCGTATGCCTAAGCCAA-AGGACGAAACGAGCGAGCGGGCGGGCGGGCGGGCGGC
648 -GAATGAACTCCGTATGCCTAAGCCAACAGG-CGAAACGAGCGAGC-GGCGGGCGGGC--G-GGC
* * ** **
17132380 ACTATGCCGACCAGAGAGACGGGATGCGTAAGCTGTGAATCGATAGGGTGGTAGGTGGGTTTAGG
707 ACTATGCCGACCAAAGAAACGGGATGCACAAGCCATGAATCGATAGGGTGGTAGGTGGGTTTAGG
* * *
17132445 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAGTTCATGCAATGGTCCCT
772 CACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * * **
17132510 TAACCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
837 TAACCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCAATTTTTCACAATTTTCAAAAC
** *
17132574 TTTTTGCGGTTC-GAGATTTTTTAAA-ATTTTTTGGAAGGAAATTTGTTC-TAAAACTTGGTAGA
1 TTTTTGCGGTTCAG-GATTTTTTAAATATTTTTTGGAAGGAAATTTGGCCGTAAAACATGGTAGA
** * *
17132636 CGAAATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAACTAAAAACT-TGAAGTGTACGAG
65 CGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAACTAAAAACTCT-AAGTTTACAAG
* * * *
17132700 ATTTTGTGACCATTTGAAAAATGTGTCCCCATTTAAGACACTTTAATGCCTACTGGTAGCAAACC
129 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
*
17132765 TATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
194 TATAAAATCTCAAATGCGCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* * * *
17132830 AATATAATGGCCAAGTACCAGTACCCATCGCACATTATGTGCGCACA-CCCCCTGGCCCCCCGAT
259 AATATAAAGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCTGGCCCCCCGAT
* * * * * * *
17132894 CGTCGGAACCACAATGTCGCCGGTCCGGTTCTCCAGTGATGCTCC-AGCGATGGTGCCCCAACGA
324 CGTCGGAACCCCAATGCCGCCGGTCGGGTTCTCCGGCGATGCTCCGA-CGATGGTACCCCGACGA
* * * * * *
17132958 AGAAAAATGC-GACACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAAACCTTGGT-CTGTT
388 AGAAAAATGCAG-CACCAGCACATGGCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGGTC
* ** * * *
17133021 CTGATCTTAGACTGGGAATGAAATCTATTTGCTTAGACAGGGAATGAACTCCATATGCCTAAGTC
452 CT-ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * *
17133086 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGGTGCCAAAGTCAGGGATC
516 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC-GGATGGC-AAGTCAGGGATC
* * * * * *
17133151 GACCTGGTCCCCCTCTGCGTGTTACCAATCCTACTGCTGCAACCCTCAGTCAGGTCTGATCTTAG
579 GACCGGGTCCCCCTCTACGTGCTGCCAATCCTGCTGCTACAACCCTCAGTCAGGTCTGATCTTAG
17133216 ACTGCGAATGAACTCCGTATGCCTAAGCCAAC
644 ACTG-GAATGAACTCCGTATGCCTAAGCCAAC
17133248 CGACGACCAG
Statistics
Matches: 1404, Mismatches: 153, Indels: 42
0.88 0.10 0.03
Matches are distributed among these distances:
901 277 0.20
902 183 0.13
903 402 0.29
904 99 0.07
905 243 0.17
906 200 0.14
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (900 bp):
TTTTTGCGGTTCAGGATTTTTTAAATATTTTTTGGAAGGAAATTTGGCCGTAAAACATGGTAGAC
GTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAACTAAAAACTCTAAGTTTACAAGAT
TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTA
TAAAATCTCAAATGCGCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
TATAAAGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCTGGCCCCCCGATCG
TCGGAACCCCAATGCCGCCGGTCGGGTTCTCCGGCGATGCTCCGACGATGGTACCCCGACGAAGA
AAAATGCAGCACCAGCACATGGCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGGTCCTAT
CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGATGGCAAGTCAGGGATCGACCGGG
TCCCCCTCTACGTGCTGCCAATCCTGCTGCTACAACCCTCAGTCAGGTCTGATCTTAGACTGGAA
TGAACTCCGTATGCCTAAGCCAACAGGCGAAACGAGCGAGCGGCGGGCGGGCGGGCACTATGCCG
ACCAAAGAAACGGGATGCACAAGCCATGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
ATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAACCCTTC
ACATGAAGTTTCATGGCAAGACGACTCGTTTTCAATTTTTCACAATTTTCAAAAC
Found at i:17133814 original size:25 final size:26
Alignment explanation
Indices: 17133777--17133828 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
17133767 CCGATCCGAT
17133777 CTTAGACTAGGAATGAACT-CGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
17133802 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17133828 C
1 C
17133829 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 18 0.72
26 7 0.28
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17135583 original size:26 final size:26
Alignment explanation
Indices: 17135554--17135606 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17135544 CCGATCCAAT
* *
17135554 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGCATG
17135580 CTTAGACTGGAAATGAACTCCGCATG
1 CTTAGACTGGAAATGAACTCCGCATG
17135606 C
1 C
17135607 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGCATG
Found at i:17136485 original size:26 final size:26
Alignment explanation
Indices: 17136449--17136501 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17136439 TCGGTCCGAT
* *
17136449 CTTATACTGGGAAAGAACTTCATATG
1 CTTAGACTGGGAAAGAACTCCATATG
*
17136475 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAAAGAACTCCATATG
17136501 C
1 C
17136502 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCATATG
Found at i:17136787 original size:895 final size:894
Alignment explanation
Indices: 17133400--17138671 Score: 7114
Period size: 894 Copynumber: 5.9 Consensus size: 894
17133390 CGTTGTATTT
* * * *
17133400 TTTTTTTGGCATGCACAGAAAAATTCAGCTAAAAACTCGAAGTATACAAGATTTTGTGACCATTT
1 TTTTTTTGGCTTGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
*
17133465 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTGAAAT
66 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* *
17133530 GCTCTTTAAGGGGGTGTGAGATCTCGAGGTTTGATGAGGGATAGGCGGCCAATATAAGGGCCAAG
131 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* * * * *
17133595 TACCAGCACCCATCGCACATCATGTGTGCACACCCCACCGGCCCCCTCGATCGACGAAACCTCAA
196 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGAAACCCCAA
* * ** * *
17133660 TGCCG-CTAGTCAGGTTCTCCGATGATGCTCCGGTGATGGTGTCCC-AGCGAAAAAAAATGCGGC
261 TGCCGTC-GGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATGCGGC
* * * * * *
17133723 ACCAGCACATGCTCGAG-CCAGCATGTGCTGTCGTAACCCTCGATCCGATCCGATCTTAGACTAG
324 ACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTCGGTCCGATCTTAGACTGG
*
17133787 GAATGAACTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGT
389 GAATGAACTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGC
* * * * ** *
17133852 GTGCGGGCGCTCAGCCGGCTAGAGGGGTGGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCT
454 GTGCAGGCGCTCAGCTGGCCAGAGGGGCGGGATGCGTAAGCCGAGGATCGGTCGGGTCCCCCTCT
* * *
17133917 GTATGC---TGA---TG-T-----AACCCTCG-GTCTGGTCTGATCTTACACTGGGAATGAACTC
519 GCATGCTATTGATCCTGCTGCCGCAACCCTCGATTC-GGTCTGATCTTAGACTGGGAATGAACTC
* * *
17133969 CGTACGCCTAAGCCAACCGAC-GAACGAGCAGGTGGACGGGCGGGCACTACGCCGGCCAGAGAGA
583 CGTATGCCTAAGCCAACCGACAAAACGAGC--G-GG-CGGGCGGGCACTACGTCGGCCAGAGAGA
* * **
17134033 CGGGATGCGCGAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAT
644 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
* * * *
17134098 GTGCCAATGCCACTTTTATTGCTTGTAAATTCATACTATGGTCCCTTAAGCCTTCACGTGAAGTT
709 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* * * *
17134163 TCATGGTAAGAGGACTCGTTTTTTACTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTT
774 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTT
* * *
17134228 TTAAAATATTTTTGGAAGGAGTTTTAGCCCTAAACTTGGTAGACGTGATCCTTGTA
839 TTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
* *
17134284 TTTTTGTTGGCATGCATAAAAAAATTCAGCCAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
1 TTTTT-TTGGCTTGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
**
17134349 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATACCTACTGGCAGCAAACCTGTAAAATCTCAAA
65 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
17134414 TGCTCTTTAA-GGGG-GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATCAA-GGCCA
130 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT-AAGGGCCA
* *
17134476 AGTACCAGCACCCATCGCACATCATGTGCGTACACCCCGCCCCCCGGCCCCCCCGATCG-CCAGA
194 AGTACCAGCACCCATCGCACATCATGTGCG--CA-CAC-CCCCCCGGCCCCCCCGATCGTCGA-A
* * * * * **
17134540 ACCCTAATGTCGTCGGTCATGTTCTCCGACGATACTCCGATGATGGTGCCCCGGTGAAGAAAAAT
254 ACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT
* * * * * *
17134605 GC-GCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCAG-TCTGGTACAATCTTG
319 GCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTC-GGTCCGATCTTA
* * *
17134668 GACTGGGAATGAACTCTGTATACTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTACGA
383 GACTGGGAATGAACTC-GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGA
* * * * * * **
17134733 AACGAGCATACGGGCGCTCAGCTGGCCAGAGGGGCAGGATGCATAAGCCGGGGATCGACCGGGTC
447 AACGAGCGTGCAGGCGCTCAGCTGGCCAGAGGGGCGGGATGCGTAAGCCGAGGATCGGTCGGGTC
* ** * ** ** * *
17134798 CTCCTCTGCATGCTATCAATCCTGCTGCCGCAACTCTC-AGTTTTGTCCAATCCTAGAATGGGAA
512 CCCCTCTGCATGCTATTGATCCTGCTGCCGCAACCCTCGA-TTCGGTCTGATCTTAGACTGGGAA
* * * *
17134862 TGAACTCCGTATGCCTAAGCCAACCAACGAAACGA----GCAGGCGGGCACTACGTCGGCTAGAG
576 TGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCGGGCACTACGTCGGCCAGAG
* * * *
17134923 AGACAGGATGCGCAAGCCATGGATCGATTGGGTGGTAGGTGGGTTTAGGCACATCTTCATAGTTC
641 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
* * *
17134988 TACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTGAGCCTTCATGTGAA
706 TGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
* * * *
17135053 GTTTCATGGCAAGACTACTCGTTTTCTATTTTTCACAATTTTTTGAATCTTTTTACGGTTCGGGA
771 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTTTGAAACTTTTTGCGGTTCGGGA
*
17135118 TTTTTTAAAATTTTTTTGGAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
835 TTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
*
17135178 TTTTTGTTGGCATT-CATAAAAAAATTCAGCTACAAACTCGAAGTGTACAAGATTTTGTGACCAT
1 TTTTT-TTGGC-TTGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* *
17135242 TTGAAAAAAGTGTCCCAATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAA
64 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
*
17135307 ATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
129 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* * *
17135372 AGTACCAGCACCCATCAG-ACATCATGTGCGCACA-CCCCCCGG-GCCCCCGATCGTCGGAACCT
194 AGTACCAGCACCCATC-GCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGAAACCC
* * * * *
17135434 CAAAGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTTCCTCGACGAAGAAAAATGCAG
258 CAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGG
* * * *
17135499 CA-CAGCACATGCTCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGATCCAATCTTAGACTG
323 CACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTCGGTCCGATCTTAGACTG
* *
17135563 GGAATGAACTCCGTATGCTTAGACTGGAAATGAACTCCGCATGCCTAAGTCAACCCATGAAACGA
388 GGAATGAACT-CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGA
* * * * *
17135628 GTGTGCGGGCGCTTAGCAGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCT
452 GCGTGCAGGCGCTCAGCTGGCCAGAGGGGCGGGATGCGTAAGCCGAGGATCGGTCGGGTCCCCCT
* * * * * * *
17135693 CTACATGTTATCGATCCTACTGCTGCAACCCTTGGTTCGGTCTGATCTTAGACTGGGAATGAACT
517 CTGCATGCTATTGATCCTGCTGCCGCAACCCTCGATTCGGTCTGATCTTAGACTGGGAATGAACT
*
17135758 CCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGG
582 CCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGG
* * * * **
17135823 GATGTGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTTATATTTCTGTGTG
647 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
*
17135888 CCAATGCGATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
712 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * * * **
17135953 TGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACATTTTACGGTTCAAGATTTTTTA
777 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTA
* ** *
17136018 AAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTCTTAGATGTGATCCTTGTA
842 AAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
* * *
17136071 TGTTTTTTGCCTTGCATAAAAAAATTCAGCTAAAAACAT-GAAGTGCAAAAGATTTTGTGACCAT
1 T-TTTTTTGGCTTGCATAAAAAAATTCAGCTAAAAAC-TCGAAGTGTACAAGATTTTGTGACCAT
* *
17136135 TTGAAAAAAGTGTCCCAATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAA
64 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* *
17136200 ATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTCATGAGGGATAGGGGGCCAATATAAGGGCCA
129 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
*
17136265 AGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCTCCGGCCCCCCCGATCGTCGAAACCCC
194 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGAAACCCC
** * * * *
17136329 AATGCCACCGGTCAGGTTCTCTGACGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGTGGC
259 AATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGC
*
17136394 ACCAAG-ACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTCGGTCCGATCTTATACTG
324 ACC-AGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTCGGTCCGATCTTAGACTG
* * * *
17136458 GGAAAGAACTTCATATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACAA
388 GGAATGAAC-TCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGA
* * *
17136523 GCGTGCAGGCTCTCAGCTGGCCAAAGGGGCGGGATACGTAAGCCGAGGATCGGTCGGGTCCCCCT
452 GCGTGCAGGCGCTCAGCTGGCCAGAGGGGCGGGATGCGTAAGCCGAGGATCGGTCGGGTCCCCCT
* * * *
17136588 CTGCATGCTGTTGATCCTGCTGCCGCAACCCTCGATTCAGTCTGATCTTAGACTTGGAATAAACT
517 CTGCATGCTATTGATCCTGCTGCCGCAACCCTCGATTCGGTCTGATCTTAGACTGGGAATGAACT
* * * *
17136653 CCGTATGCCTAAGCCAACTGACAAAACGAGCGGGCGGGCGGGCATTACGTTGGCTAGAGAGACGG
582 CCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGG
17136718 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
647 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
*
17136783 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCA
712 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * *
17136848 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAAGTTTTTGCGGTTCGGAATTTTTTA
777 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTA
* * * *
17136913 AAATTTTTTCGAAAGGAGTTTTGGCCCGAAACTTGGTAGACCTGATCCTT-TA
842 AAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
* * * *
17136965 TTTTTTTTGGCATGCACAAAAATATTCAGCTAAAAACTCGAAGTGTACAAGTTTTTGTGACCATT
1 -TTTTTTTGGCTTGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
* *
17137030 TGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGCTACTAGCAGCAAACCTGTAAAATCTCAAA
65 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
* *
17137095 TGCTCTTTAAGGGGGTGTGGGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
130 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* * * *
17137160 GTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCCGG-GCCCCCGATCGTAGGAACCCCA
195 GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGAAACCCCA
* * *
17137224 ATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCA
260 ATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCA
* * ** * *
17137289 GCAGGACATGCTCGAGCCCCTCATTTGCTGCCACAA-CC-C---TC-G---G-TC-----CT--G
325 CCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTCGGTCCGATCTTAGACTGGG
*
17137337 --T---C-CG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCG
390 AATGAACTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCG
* * ** * *
17137394 TGCAGGCGCTCAGCCGGCCAAAGGGGCGGGATATGTAAGCTGAGGATCGGTCGGGTCCCTCTCTG
455 TGCAGGCGCTCAGCTGGCCAGAGGGGCGGGATGCGTAAGCCGAGGATCGGTCGGGTCCCCCTCTG
* * * *
17137459 CGTGCTATTGATCCTGGTGCCGCAACCCTCGATTCGGTCCGATCTTAGACTGGGAATAAACTCCG
520 CATGCTATTGATCCTGCTGCCGCAACCCTCGATTCGGTCTGATCTTAGACTGGGAATGAACTCCG
* *
17137524 TATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCGGGCATTACGTTGGCCAGAGAGACGGGAT
585 TATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGAT
* * *
17137589 GCGTAAGCCGTGGATCGGTAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGCATGCCA
650 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
17137654 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
715 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* *
17137719 CAAGA-TACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAA
780 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAA
** *
17137783 TTTTTGCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTCATCCTTGTA
845 TTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
* *
17137833 TTTTTTTTGGCTTGCACAAAAAAATTCAGCTAAAAACTCGAAGGGTACAAGATTTTGTGACCATT
1 -TTTTTTTGGCTTGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
* *
17137898 TGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGCTACTAGCAGCAAACCTGTAAAATCTCAAA
65 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
* *
17137963 TGCTCTTTAAGGGGGTGTGGGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
130 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* * * *
17138028 GTACCAGCACCCATCGCACATCATGTGCACACACCCCCCCGACCCCCTCCGATCATCGGAACCCC
195 GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC-CCGATCGTCGAAACCCC
* * * *
17138093 AATGCGGGCGGTCAGGTTCTCCGACGATTCTCCGACGATGGTGCCCCGGCGAAG-AAAATGCGGC
259 AATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGC
***
17138157 ACCAGCACATGCTCGAGCCCCTTATGTGCTGCCGCAACCCTCGGTTCGGTCCGATCTTAGACTGG
324 ACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTCGGTCCGATCTTAGACTGG
* * *
17138222 GAATGAACTCTATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACGCACGAAACGAG
389 GAATGAACTC-GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAG
* * * * * *
17138287 TGTGCAGGCGCTCAG-TCGGCCAGAGGGGCAGGATGCGTAAGTCGGGGATC-GACTGGGTCCCAC
453 CGTGCAGGCGCTCAGCT-GGCCAGAGGGGCGGGATGCGTAAGCCGAGGATCGGTC-GGGTCCCCC
* * ** * * * * *
17138350 TCTACGTGCTGCTGATCCTGCTACCGTAACCCTCGGTCTGGTCTGATCTGATCTTAGACTAGGAA
516 TCTGCATGCTATTGATCCTGCTGCCGCAACCCTC-G-AT--TC-GGTCTGATCTTAGACTGGGAA
* * * * * * *
17138415 TGAACTTCGTATGCCTTAGCCAACCTACGAAACAAGCGGGCGGGTGGGCGAGCACTACGCCGGCC
576 TGAACTCCGTATGCCTAAGCCAACCGAC--AA-AA-CGAGCGGGCGGGCGGGCACTACGTCGGCC
* * *
17138480 AGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGAGTTTAGGCACATCTTTATA
637 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
* * * * *
17138545 TTTCTGCGTGCCAATACCTTTTTTATGGCTTGTAAATTCATAGAATGGTCCCTGAAGCCTTCACG
702 TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
*
17138610 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAATCTTTTTGCGGT
767 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGT
17138672 GTCATAACAT
Statistics
Matches: 3900, Mismatches: 393, Indels: 169
0.87 0.09 0.04
Matches are distributed among these distances:
867 96 0.02
868 595 0.15
869 47 0.01
870 65 0.02
871 1 0.00
872 1 0.00
874 2 0.00
875 1 0.00
877 1 0.00
878 1 0.00
879 4 0.00
883 72 0.02
884 15 0.00
885 130 0.03
886 24 0.01
887 117 0.03
888 114 0.03
889 2 0.00
890 307 0.08
891 16 0.00
892 5 0.00
893 472 0.12
894 791 0.20
895 640 0.16
896 76 0.02
897 2 0.00
899 2 0.00
900 89 0.02
901 6 0.00
902 2 0.00
903 2 0.00
904 162 0.04
905 40 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (894 bp):
TTTTTTTGGCTTGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGAAACCCCAA
TGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCAC
CAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTCGGTCCGATCTTAGACTGGGA
ATGAACTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGT
GCAGGCGCTCAGCTGGCCAGAGGGGCGGGATGCGTAAGCCGAGGATCGGTCGGGTCCCCCTCTGC
ATGCTATTGATCCTGCTGCCGCAACCCTCGATTCGGTCTGATCTTAGACTGGGAATGAACTCCGT
ATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATG
CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
AAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAAT
TTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
Found at i:17138263 original size:26 final size:26
Alignment explanation
Indices: 17138212--17138264 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17138202 TCGGTCCGAT
*
17138212 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17138238 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17138264 C
1 C
17138265 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17139329 original size:59 final size:58
Alignment explanation
Indices: 17139145--17139362 Score: 332
Period size: 58 Copynumber: 3.8 Consensus size: 58
17139135 TCTTGTGTAG
* * **
17139145 GGAAAATTGATACTTTCAACTTTTTCCTAAAAGTA-TTTTTTGGAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTAAATTTATTTTTAA
* **
17139202 GGAAAATTGATACTTTCGACTTTTCCCTAAAAATATTTTTTTAAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTAAATTTATTTTTAA
*
17139260 GGAAAATTGATACTTTCAACTTTT-CCTCAAAAATACTTTTTTTTTAAACTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCT-AAAAATA-TTTTTTTTTAAATTTATTTTTAA
17139319 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTT
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTT
17139363 GGAAATTTTG
Statistics
Matches: 148, Mismatches: 9, Indels: 7
0.90 0.05 0.04
Matches are distributed among these distances:
57 35 0.24
58 59 0.40
59 51 0.34
60 3 0.02
ACGTcount: A:0.34, C:0.11, G:0.07, T:0.47
Consensus pattern (58 bp):
GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTAAATTTATTTTTAA
Found at i:17139331 original size:117 final size:115
Alignment explanation
Indices: 17139145--17139360 Score: 353
Period size: 117 Copynumber: 1.9 Consensus size: 115
17139135 TCTTGTGTAG
* *
17139145 GGAAAATTGATACTTTCAACTTTTTCCTAAAAGTATTTTTTGGAAATTTATTTTTAAGGAAAATT
1 GGAAAATTGATACTTTCAACTTTTTCCTAAAAATATTTTTTGGAAACTTATTTTTAAGGAAAATT
*
17139210 GATACTTTCGACTTTTCCCTAAAAATATTTTTTTAAAAATTTATTTTTAA
66 GATACTTTCAACTTTTCCCTAAAAATATTTTTTTAAAAATTTATTTTTAA
**
17139260 GGAAAATTGATACTTTCAAC-TTTTCCTCAAAAATACTTTTTTTTTAAACTTATTTTTAAGGAAA
1 GGAAAATTGATACTTTCAACTTTTTCCT-AAAAATA--TTTTTTGGAAACTTATTTTTAAGGAAA
17139324 ATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTT
63 ATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTT
17139361 TTGGAAATTT
Statistics
Matches: 93, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
114 7 0.08
115 26 0.28
117 60 0.65
ACGTcount: A:0.34, C:0.12, G:0.07, T:0.47
Consensus pattern (115 bp):
GGAAAATTGATACTTTCAACTTTTTCCTAAAAATATTTTTTGGAAACTTATTTTTAAGGAAAATT
GATACTTTCAACTTTTCCCTAAAAATATTTTTTTAAAAATTTATTTTTAA
Found at i:17139425 original size:18 final size:18
Alignment explanation
Indices: 17139402--17139458 Score: 71
Period size: 18 Copynumber: 3.2 Consensus size: 18
17139392 CAGAATAATA
17139402 AAAAAAATAAATAAAAAT
1 AAAAAAATAAATAAAAAT
* *
17139420 AAAAAAATAAAGAAAAGT
1 AAAAAAATAAATAAAAAT
* *
17139438 AAAATAA-AAATGAAAAT
1 AAAAAAATAAATAAAAAT
17139455 AAAA
1 AAAA
17139459 TAAAGATAAA
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
17 11 0.33
18 22 0.67
ACGTcount: A:0.81, C:0.00, G:0.05, T:0.14
Consensus pattern (18 bp):
AAAAAAATAAATAAAAAT
Found at i:17139426 original size:22 final size:22
Alignment explanation
Indices: 17139395--17139566 Score: 73
Period size: 22 Copynumber: 7.5 Consensus size: 22
17139385 AAGAAAACAG
*
17139395 AATAATAAAAAAAATAAATAAA
1 AATAAAAAAAAAAATAAATAAA
17139417 AATAAAAAAATAAAGA-AAAGT-AA
1 AATAAAAAAA-AAA-ATAAA-TAAA
**
17139440 AATAAAAATGAAAATAAAATAAA
1 AATAAAAAAAAAAAT-AAATAAA
* * * *
17139463 GATAAAAAGAATATTAAATAAA
1 AATAAAAAAAAAAATAAATAAA
** *** *
17139485 CCTAATCTAATAAATAAATAAA
1 AATAAAAAAAAAAATAAATAAA
* *
17139507 AATAAAAACAAATAAA-CAA-AGA
1 AATAAAAA-AAA-AAATAAATAAA
*
17139529 AATGAAAATAAAAAAATTCAAAAAAA
1 AAT-AAAA-AAAAAAA-T-AAATAAA
*
17139555 AAGAAAAAAAAA
1 AATAAAAAAAAA
17139567 CCTGGAACGG
Statistics
Matches: 108, Mismatches: 28, Indels: 26
0.67 0.17 0.16
Matches are distributed among these distances:
21 1 0.01
22 44 0.41
23 42 0.39
24 11 0.10
25 6 0.06
26 4 0.04
ACGTcount: A:0.76, C:0.03, G:0.05, T:0.16
Consensus pattern (22 bp):
AATAAAAAAAAAAATAAATAAA
Found at i:17139435 original size:11 final size:10
Alignment explanation
Indices: 17139401--17139462 Score: 56
Period size: 10 Copynumber: 6.2 Consensus size: 10
17139391 ACAGAATAAT
17139401 AAAAAAAATA
1 AAAAAAAATA
*
17139411 AATAAAAAT-
1 AAAAAAAATA
17139420 -AAAAAAATA
1 AAAAAAAATA
* *
17139429 AAGAAAAGTA
1 AAAAAAAATA
17139439 AAATAAAAATGA
1 AAA-AAAAAT-A
*
17139451 AAATAAAATA
1 AAAAAAAATA
17139461 AA
1 AA
17139463 GATAAAAAGA
Statistics
Matches: 41, Mismatches: 7, Indels: 8
0.73 0.12 0.14
Matches are distributed among these distances:
8 7 0.17
10 20 0.49
11 10 0.24
12 4 0.10
ACGTcount: A:0.81, C:0.00, G:0.05, T:0.15
Consensus pattern (10 bp):
AAAAAAAATA
Found at i:17139458 original size:23 final size:22
Alignment explanation
Indices: 17139383--17139475 Score: 66
Period size: 23 Copynumber: 4.1 Consensus size: 22
17139373 ATTTTTTATT
* *
17139383 TAAAGAAAACAGAATAATAAAAA
1 TAAAGAAAATAAAATAA-AAAAA
*
17139406 -AAA-TAAATAAAAATAAAAAAA
1 TAAAGAAAAT-AAAATAAAAAAA
*
17139427 TAAAGAAAAGTAAAATAAAAATGA
1 TAAAGAAAA-TAAAATAAAAA-AA
*
17139451 -AAATAAAATAAAGATAAAAAGAA
1 TAAAGAAAATAAA-ATAAAAA-AA
17139474 TA
1 TA
17139476 TTAAATAAAC
Statistics
Matches: 55, Mismatches: 8, Indels: 13
0.72 0.11 0.17
Matches are distributed among these distances:
21 8 0.15
22 16 0.29
23 28 0.51
24 3 0.05
ACGTcount: A:0.76, C:0.01, G:0.08, T:0.15
Consensus pattern (22 bp):
TAAAGAAAATAAAATAAAAAAA
Found at i:17139467 original size:11 final size:10
Alignment explanation
Indices: 17139398--17139469 Score: 55
Period size: 10 Copynumber: 7.2 Consensus size: 10
17139388 AAAACAGAAT
17139398 AATAAAA-AA
1 AATAAAATAA
17139407 AAT-AAATAA
1 AATAAAATAA
17139416 AA-ATAAA-AA
1 AATA-AAATAA
17139425 AATAAAGA-AA
1 AATAAA-ATAA
*
17139435 AGTAAAATAAA
1 AATAAAAT-AA
17139446 AATGAAAATAA
1 AAT-AAAATAA
17139457 AATAAAGATAA
1 AATAAA-ATAA
17139468 AA
1 AA
17139470 AGAATATTAA
Statistics
Matches: 52, Mismatches: 2, Indels: 16
0.74 0.03 0.23
Matches are distributed among these distances:
8 3 0.06
9 14 0.27
10 15 0.29
11 15 0.29
12 5 0.10
ACGTcount: A:0.79, C:0.00, G:0.06, T:0.15
Consensus pattern (10 bp):
AATAAAATAA
Found at i:17139480 original size:23 final size:22
Alignment explanation
Indices: 17139410--17139484 Score: 66
Period size: 23 Copynumber: 3.3 Consensus size: 22
17139400 TAAAAAAAAT
*
17139410 AAATAAAAATAAAAA-AATAAAGA
1 AAAT-AAAATAAAAAGAAT-AATA
17139433 AAAGTAAAATAAAAATGAA-AATA
1 AAA-TAAAATAAAAA-GAATAATA
*
17139456 AAATAAAGATAAAAAGAAT-ATT
1 AAATAAA-ATAAAAAGAATAATA
17139478 AAATAAA
1 AAATAAA
17139485 CCTAATCTAA
Statistics
Matches: 45, Mismatches: 2, Indels: 11
0.78 0.03 0.19
Matches are distributed among these distances:
22 16 0.36
23 26 0.58
24 1 0.02
25 2 0.04
ACGTcount: A:0.76, C:0.00, G:0.07, T:0.17
Consensus pattern (22 bp):
AAATAAAATAAAAAGAATAATA
Found at i:17140571 original size:27 final size:27
Alignment explanation
Indices: 17140514--17140597 Score: 86
Period size: 27 Copynumber: 3.1 Consensus size: 27
17140504 ACAATAAGAT
17140514 AAATAAA-AAAAATATTACA-AGAAA-AA
1 AAATAAATAAAAATA-TACATA-AAATAA
*
17140540 AAATAAATAAAAATATACATACAATAA
1 AAATAAATAAAAATATACATAAAATAA
*
17140567 TAATAAATAATAAA-ATACATAAAATACA
1 AAATAAATAA-AAATATACATAAAATA-A
17140595 AAA
1 AAA
17140598 GAAAAGAAAA
Statistics
Matches: 49, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
26 13 0.27
27 30 0.61
28 6 0.12
ACGTcount: A:0.73, C:0.06, G:0.01, T:0.20
Consensus pattern (27 bp):
AAATAAATAAAAATATACATAAAATAA
Found at i:17140579 original size:30 final size:27
Alignment explanation
Indices: 17140499--17140581 Score: 87
Period size: 26 Copynumber: 3.0 Consensus size: 27
17140489 TTATTAACAG
*
17140499 ATAATACAATAAGATAAATAA-AAAAA
1 ATAATACAATAAAATAAATAATAAAAA
* * *
17140525 ATATTACAAGAAAAAAAATAAATAAAAA
1 ATAATACAATAAAATAAAT-AATAAAAA
17140553 TATACATACAATAATAATAAATAATAAAA
1 -ATA-ATACAATAA-AATAAATAATAAAA
17140582 TACATAAAAT
Statistics
Matches: 45, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
26 15 0.33
27 2 0.04
28 5 0.11
29 3 0.07
30 14 0.31
31 6 0.13
ACGTcount: A:0.71, C:0.05, G:0.02, T:0.22
Consensus pattern (27 bp):
ATAATACAATAAAATAAATAATAAAAA
Found at i:17140584 original size:23 final size:21
Alignment explanation
Indices: 17140544--17140597 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 21
17140534 GAAAAAAAAT
*
17140544 AAATAAAAATATACATACAATA
1 AAATAAAAATATAAATAC-ATA
17140566 ATAATAAATAATA-AAATACATA
1 A-AATAAA-AATATAAATACATA
17140588 AAATACAAAA
1 AAATA-AAAA
17140598 GAAAAGAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
21 6 0.21
22 7 0.25
23 11 0.39
24 4 0.14
ACGTcount: A:0.70, C:0.07, G:0.00, T:0.22
Consensus pattern (21 bp):
AAATAAAAATATAAATACATA
Found at i:17141175 original size:26 final size:26
Alignment explanation
Indices: 17141139--17141190 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
17141129 CTGATCCGAT
17141139 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17141165 CTTAGACTGGGAATGAACTCCCTATG
1 CTTAGACTGGGAATGAACTCCATATG
17141191 TCTAAGCCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17143348 original size:902 final size:897
Alignment explanation
Indices: 17141165--17143944 Score: 3965
Period size: 902 Copynumber: 3.1 Consensus size: 897
17141155 ACTCCATATG
* * * *
17141165 CTTAGACTGGGAATGAACTCCCTATGTCTAAGCCAACCGACGAAACGAA-CGGGCGGGCGGG-CG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-AAGCGGGCAGGCGGGTAG
* * ** *
17141228 TGCGGGCACCACACCGGCCAGAGAGACGGGACGCGCAAGCCATAAATCGATAAGGTGGTAGGTGG
65 -GCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGG
* *
17141293 GTTTAGGCACATCTACATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
129 GTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * *
17141358 GGTCACTTAAGCCTTCACGTGAAGTGTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTT
194 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* ** * **
17141423 TAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTCTCCCCAAACTTGG
259 TTAAACTTTTTACGGTTCCAGATTTTTTAAAATTTTTTCAGAAGGATTTTTAGCCCCAAACTTGG
* * *
17141488 TAGACATGATCCTTGTATTTTGGTTGGCATGCACAAAAAAATTCAACTAAAAACTCGAAGTGTAC
324 TAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAACTAAAAACTCGAAGTGTAC
* * * *
17141553 AAGATTTTGGGACCATTTGAAAAAAGTGTCCACATTTCAAACACTTTAATGGCTACTGGCAGCAA
389 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGCAA
* *
17141618 AACTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGACTTCTCGAGGTTTGATGAGGGATAGGGG
454 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * * *
17141683 GCCAATATAAGGGCCAAGTACTAGAACCCATCGTACATCATGTGTGCACACCCCCAGACCCCCCC
519 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCGA-CCCCCC
* * *
17141748 GATC-GTCGGAACCCCAATGCTGCGGTCAGGTTCTCCGGCGATGCTCCGACGATTGTGCCCTGGC
583 GATCGGT-GGAACCCCAATGCT-CGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGT
* * *
17141812 GAAGAAAAAAGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCAACCCTCAGTCTGGT
646 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGT
*
17141877 CCGATCTTAGACT--GAATGAACTCCGTATGCTTGGACTGGGAATGAACTCCGTATGCCTATGTC
711 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTGGACTGGGAATGAACTCCGTATGCCTAAGTC
** *
17141940 AACCTACGAAACGAGCGTGCGGGCGCTCAAACGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
776 AACCTACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCC-GGGATC
* ** * ** * ***
17142005 GGTCGGGTCCCCCTCTGTGTGCTGCCGATCCTACTGTCCAACCCTCAG-TCGAAAAGGAT
840 GG-CGGGTCCCCCTTTGCATGCTGCCGATCCTGCTACCCAACCCTCGGTTCG-GTCGGAT
** * * *
17142064 CTTAGACTGGGAATGAACTCCGTATGCCTATTCCAACTGATGAAACGAGCGGGCAGGC----AGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCAGGCGGGTAGG
* * *
17142125 CAGGCACTACACCGGCCAAAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTGGGTGGGT
66 CGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGT
* * *
17142190 TTAGGTACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTTTAAATTCACACAATGG
131 TTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
*
17142255 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCAATTTTTCACGA-TTTTT
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTT
* * *
17142319 AAAATTTTTAGGGTT-CAGGATTTTTTAAAA-TTTTTCAGAAGGAGTTTTAGCCCCAAACTTGGT
261 AAACTTTTTACGGTTCCA-GATTTTTTAAAATTTTTTCAGAAGGATTTTTAGCCCCAAACTTGGT
* * * *
17142382 AGACGTGATCCTTGTATTTTTGTTGGTATGCAAAAAAAAAAATTCAGCTTAAAACTCCAAGTGTA
325 AGACGTGATCCTTGTATTTTTGTTGGCATGC--AAAAAAAAATTCAACTAAAAACTCGAAGTGTA
* *
17142447 CAAGATTTTATGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCGGCA
388 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGCA
17142512 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
453 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
*
17142577 GGCCAATATAAGGGCCAAGTACCAGCACACATCGCACATCATGTGTGCACACCCCCCGACCCCCC
518 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCGACCCCCC
* *
17142642 TGATCGGTGGAACCCCAATGCAATCGGTCAGGTTCTCCGGCGATGCTCCTACGATGGTGCCCCGA
583 -GATCGGTGGAACCCCAATGC--TCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGG
* * *
17142707 TGAAGATAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGG
645 TGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGG
* * *
17142772 TCCGATCTTAGGCTGGGAATGAACTCCATATGCTTGGACTGGGAATGAACTCCATATGCCTAAGT
710 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTGGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * *
17142837 CAACCCATGAAACGAGCGTACGGGGCGCTCAGCCGACCAGAGGGGCAGGATGTGCAAGCC-GGAT
775 CAACCTACGAAACGAGCGTGC-GGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGAT
* * *
17142901 CGGCGGGGGCCCCCTTTGCATGCTGCCAATCCTGCTACCACAACCCTCGGTTTGGTCGGAT
839 CGGC-GGGTCCCCCTTTGCATGCTGCCGATCCTGCTACC-CAACCCTCGGTTCGGTCGGAT
*
17142962 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCAGGCGGGTGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCAGGCGGGTAGG
***
17143027 CGGGCACTACGTTGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGT
66 CGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGT
17143092 TTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
17143157 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTCTCTATTTTTCATGATTTTTT
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTT
* * * * * *
17143222 AAACTTTTTACGGTTCCAAATTTCTTAAAATTTTTTCAAAAGGATTTTTGGCCCCAAACTTTGAA
261 AAACTTTTTACGGTTCCAGATTTTTTAAAATTTTTTCAGAAGGATTTTTAGCCCCAAACTTGGTA
* *
17143287 GACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAACTAAAAAATCGAAGTGTACAA
326 GACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAACTAAAAACTCGAAGTGTACAA
* * * *
17143352 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTAGTAGTAGCAAAC
391 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGCAAAC
*
17143417 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGC
456 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
*
17143482 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT-TCGCACACCCCCCCGGCCCCTCC
521 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGT-GCACA-CCCCCCGACCCC-CC
* * * * * *
17143546 GATCGTTGGAATCCCAATGC-CGCCAGTCAGGTTCTTCAGCGACGCTCCGACGATGGTGCCTCGG
583 GATCGGTGGAACCCCAATGCTCG---GTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGG
* * *
17143610 TGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCGGCATGTGCTGCCACAACCCCCGGTCTGG
645 TGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGG
* * * *
17143675 TCTGATCTTAGACTGGGAAAGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGT
710 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTGGACTGGGAATGAACTCCGTATGCCTAAGT
*
17143740 CAACCTACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGAT
775 CAACCTACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCC-GGGAT
* ** * * * * *
17143805 CGACCGCATCCCCCTTTGCATGCTGCTGATCCTGCTACCGCAACCCTCGATCCCGTCCGAT
839 CG-GCGGGTCCCCCTTTGCATGCTGCCGATCCTGCTACC-CAACCCTCGGTTCGGTCGGAT
* * * *
17143866 CTTGGACTGGGAATGAACTCCGTAAGCCTAAGCCAACCGACGAAACGAGCGGAC-GGTCGGGTAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCAGG-CGGGTAG
17143930 GCGGGCACTACACCG
65 GCGGGCACTACACCG
17143945 ACTAGANNNN
Statistics
Matches: 1670, Mismatches: 180, Indels: 57
0.88 0.09 0.03
Matches are distributed among these distances:
893 57 0.03
894 35 0.02
895 394 0.24
896 112 0.07
897 34 0.02
898 131 0.08
899 83 0.05
900 2 0.00
901 1 0.00
902 412 0.25
903 227 0.14
904 181 0.11
905 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (897 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCAGGCGGGTAGG
CGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGT
TTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTT
AAACTTTTTACGGTTCCAGATTTTTTAAAATTTTTTCAGAAGGATTTTTAGCCCCAAACTTGGTA
GACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAACTAAAAACTCGAAGTGTACAA
GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGCAAAC
CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCGACCCCCCGAT
CGGTGGAACCCCAATGCTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGTGAAGA
AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGAT
CTTAGACTGGGAATGAACTCCGTATGCTTGGACTGGGAATGAACTCCGTATGCCTAAGTCAACCT
ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGATCGGCGGG
TCCCCCTTTGCATGCTGCCGATCCTGCTACCCAACCCTCGGTTCGGTCGGAT
Found at i:17143717 original size:26 final size:26
Alignment explanation
Indices: 17143681--17143733 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17143671 CTGGTCTGAT
17143681 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
* *
17143707 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
17143733 C
1 C
17143734 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:17145492 original size:26 final size:26
Alignment explanation
Indices: 17145452--17145504 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17145442 TCGATCTAAT
*
17145452 CTTAGACTGGAAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
*
17145478 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
17145504 C
1 C
17145505 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:17146371 original size:26 final size:26
Alignment explanation
Indices: 17146333--17146384 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
17146323 CAGTTCGATG
*
17146333 TTAGACTAGGAATGAACTCCGTATGC
1 TTAGACTACGAATGAACTCCGTATGC
*
17146359 TTAGACTACGAATGAACTCTGTATGC
1 TTAGACTACGAATGAACTCCGTATGC
17146385 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (26 bp):
TTAGACTACGAATGAACTCCGTATGC
Found at i:17147262 original size:26 final size:26
Alignment explanation
Indices: 17147233--17147283 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
17147223 CCGATCCGAT
17147233 CTTA-GATGGGGAATGAACTCCGTATG
1 CTTAGGAT-GGGAATGAACTCCGTATG
* *
17147259 CTTAGGCTGGGAATGAACTTCGTAT
1 CTTAGGATGGGAATGAACTCCGTAT
17147284 CCCTAAGTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
CTTAGGATGGGAATGAACTCCGTATG
Found at i:17147758 original size:893 final size:891
Alignment explanation
Indices: 17145450--17154204 Score: 10160
Period size: 899 Copynumber: 9.8 Consensus size: 891
17145440 CCTCGATCTA
* ** * *
17145450 ATCTTAGACT-GGAAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAA
1 ATCTTAGACTAGG-AATGAACTCCGTATGCTTAGACTACGAATGAACTCTGTATGCCTAAGTCAA
* * * * * *
17145514 CCCAGGAAACGAGCGTGCGGGCACTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGTTCAA
65 CCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGTAAGACGGGGATCGA
* * * * * ***
17145579 TCGGGTCCCCCTCTCCGTGCTGCCGATCCTGCTGCCACAACCCTTGGTCTGGTCCAATCTTAGAC
130 CCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTTTGATCTTAGAC
* *
17145644 GGGGAATGAACTCCGTATGCCTAAGCC-AACTGACGAAACAA--GGG--GG---T--G--GGCTA
195 TGGGAATGAACTCCGTATGCCTAAGCCAAAC-GACGAAACAAGCGGGCAGGCACTACGCCGGCCA
* *
17145697 GAGAGACGGGATGCGCAAGCCGTGGAAT-GATAGGATGGTAGATGGGTTTAGGCACATCTTCATA
259 GAGAGACAGGATGCGCAAGCCGTGG-ATCGATAGGGTGGTAGATGGGTTTAGGCACATCTTCATA
* * *
17145761 TTTCTGTGTGCCAATGCCATTTTTATGACTTGTAAATTCATACAATGGTCCCTTAAGCCTTGACG
323 TTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
* * *
17145826 TGAAGTTTCATGGCAAGACGACTTGTATTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCA
388 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACCTTTTGCGGTTCA
*
17145891 GGATTTTTTAAACTTTTTTCGGAAGGAGTTTTGGACCCAAACCTGGTAGACGTGATCCTTGTATT
453 GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGACCCAAACCTGGTAGACGTGATCCTTGTATT
** *
17145956 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAATTCAAAGTGTACAAGATTTTGTGACCATTTT
518 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACCCAAAGTGTACAAGATTTTGTGACCATTTG
* * * *
17146021 AAAAAAGTGTCCCCATTTCAGACACTTTAATGCCTACTGGC-AGCAAACCTGTAAAATCTTAAGT
583 AAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAAGCAAACCTGTAAAATCTCAAAT
* * * * * *
17146085 GCTTTTTAAGGGGGTGCGAGTTCTCGAGATTTAATGAGGGATAGGGAGCCAATATGAGGGCCAAG
648 GCTCTTTAAGGGGGTGTGAGTTATCAAGATTTAATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* *
17146150 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC-CCTAATCACCAGAACCACAA
713 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCTCC-GATCACCGGAACCACAA
* * **
17146214 TGCCGTCGGTCAGGTTCTCCGACGATGCTCTGGCGATGGTGCCCCGGTGAAGAAAAATGCGGCAC
777 TGCCATCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCAC
* * *
17146279 CAGCACATGCCTGAGCCCAGCATGTGCTGCCACAACCCTCGGACCAGTTCG
842 CAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGAACCA-TCCG
*
17146330 ATGTTAGACTAGGAATGAACTCCGTATGCTTAGACTACGAATGAACTCTGTATGCCTAAGTCAAC
1 ATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTACGAATGAACTCTGTATGCCTAAGTCAAC
* *
17146395 CCACAAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGTAAGACGGGGATCGAT
66 CCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGTAAGACGGGGATCGAC
* * * *
17146460 CGGGTCCCCCTCTGTGTGCT-CTCGATCCTGCTGCTGCAACCCTTGGTCTGG-TTGAATCTTAGA
131 CGGGTCCCCCTCTGCGTGCTGC-CGATCCTGCTGCCGCAACCCTCGGTCCGGTTTG-ATCTTAGA
* * *
17146523 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGGAACTAC
194 CTGGGAATGAACTCCGTATGCCTAAGCCAAACGACGAAAC-A-------AGCGGGCAGGCACTAC
* *
17146588 GTCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
251 GCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGATGGGTTTAGGCACAT
* * *
17146653 CTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAACC
316 CTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* *
17146718 CTTCACGTGAAGTTTCATGGCGAGACGACTCGTTTTCTATTTTTCATGGTTTTTGAAACCTTTTG
381 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACCTTTTG
* * * **
17146783 CGGTCCAGGATTTTTTAAAATTTTTTCGGAAGGTGTTTTGGCCCCAAATTTGGTAGACGTGATCC
446 CGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGACCCAAACCTGGTAGACGTGATCC
* ** ** *
17146848 TTGTATATTTGTTGGCATGTGCAAAAAAATTCAGCTTGAAACCCGAAGTGTACAAGATTTTGTGA
511 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACCCAAAGTGTACAAGATTTTGTGA
17146913 CCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAAG-AAACCTGTAAAAT
576 CCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAAGCAAACCTGTAAAAT
* *
17146977 CTCAAATGCTCTTTAAGGGGGTGTGAGTTATCAAGGTTTGATGAGGGATAGGGGGCCAATATAAG
641 CTCAAATGCTCTTTAAGGGGGTGTGAGTTATCAAGATTTAATGAGGGATAGGGGGCCAATATAAG
**
17147042 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCCGGCCCCTCCGATCGGCGG
706 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCCCGGCCCCTCCGATCACCGG
* * * * *
17147107 AACCCCATTGCCATCGATCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGGAGAAAAA
769 AACCACAATGCCATCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAA
* * * **
17147172 TGCGGCACCAGCACATGCCTGAGGCCGGCATGTGCTGCCGTAACCCTCGTTCCGATCCG
834 TGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGAACC-ATCCG
* * ** *
17147231 ATCTTAGA-TGGGGAATGAACTCCGTATGCTTAGGCTGGGAATGAACT-TCGTATCCCTAAGTCA
1 ATCTTAGACT-AGGAATGAACTCCGTATGCTTAGACTACGAATGAACTCT-GTATGCCTAAGTCA
** * * * * *
17147294 ACCCACGAAATAAGCGTCCGGGCACTCAGTCGGCTAGATGGGCGGGATGCGTAAGTCGGGGATCG
64 ACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGTAAGACGGGGATCG
** * *
17147359 ACCGGGTCCCCCTCTATGTGCTGCCGATCCTGTTGCCGCAACCCTCGGTCCGGTTTGATCTGAGA
129 ACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTTTGATCTTAGA
* * * * *
17147424 CTGGGAATGAACTCCATATGCCTAAGCAAAACGATGAAATAAGCGGGCAGGCACTACGCCAGCCA
194 CTGGGAATGAACTCCGTATGCCTAAGCCAAACGACGAAACAAGCGGGCAGGCACTACGCCGGCCA
* * *
17147489 GAGAGATAGGATGCGCAAGCCATGGATCGATAGGTTGGTAGATGGGTTTAGGCACATCTTCATAT
259 GAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGATGGGTTTAGGCACATCTTCATAT
* *
17147554 TTCTGTGTGCCAATGCCATTTTTACGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
324 TTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* *
17147619 GAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCAG
389 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACCTTTTGCGGTTCAG
*
17147684 GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGACCCAAACCTGGTAGACGTGATCCTAGTATTT
454 GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGACCCAAACCTGGTAGACGTGATCCTTGTATTT
* *
17147749 TTGTTGGCATGCACAAAAATATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGA
519 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACCCAAAGTGTACAAGATTTTGTGACCATTTGA
* * * *
17147814 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG-AAGCAAACCTGTAAAGTCT-TAAGG
584 AAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAAGCAAACCTGTAAAATCTCAAATG
* * * *
17147877 TTTTTTTAAGGGGGTGGGAGTTCTCAAGATTTAATGAGGGATAGGGGGCCAATATAAGGGCCAAG
649 -CTCTTTAAGGGGGTGTGAGTTATCAAGATTTAATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* *
17147942 CACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCACCGGAACCACAAT
713 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCTCCGATCACCGGAACCACAAT
* * * * *
17148007 GCCATCGGTTAGGTTCTCCGATGACGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGTGGCACC
778 GCCATCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACC
*
17148072 AGCACATGCCTGAGCCCAGCATGTGCTACCGCAACCCTCGAACCAATCCG
843 AGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGAACC-ATCCG
* * * *
17148122 ATGTTAGACTAGGAATGAATTTCGTATGCTTAGACTACGAATGAACTCTGTATGCTTAAGTCAAC
1 ATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTACGAATGAACTCTGTATGCCTAAGTCAAC
* *
17148187 CCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGTGGGATACGTAAGACGGGGATCGAC
66 CCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGTAAGACGGGGATCGAC
* * * * *
17148252 CGGGTCCCCCTCTGCGTGCTCCCAATCCTACTGCTGCAACCCTCGGTCCGGTTGGATCTTAGACT
131 CGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTTTGATCTTAGACT
* * * *
17148317 AGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGAACTATGCCGGC
196 GGGAATGAACTCCGTATGCCTAAGCCAAACGACGAAACAAGCGGGCAGGC----ACTACGCCGGC
* *
17148382 CAGAGAGAC-GAGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
257 CAGAGAGACAG-GATGCGCAAGCCGTGGATCGATAGGGTGGTAGATGGGTTTAGGCACATCTTCA
*
17148446 TATTTCTGCGTGCCTATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
321 TATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
*
17148511 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCAATTTTTCATGATTTTTGAAACCTTTTGCGG-T
386 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACCTTTTGCGGTT
* * * ** *
17148575 CTGGGATTTTTTAAAATTTTTTTGGAAGGTGTTTTGCCCCCAAACTTGGTAGACGTGATCCTTGT
451 C-AGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGACCCAAACCTGGTAGACGTGATCCTTGT
* * *
17148640 ATTTTTTTTGGCATGCGCAAAAAAATTCAGCTAAAAACCCGAAGTGTACAAGATTTTGTGACCAT
515 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACCCAAAGTGTACAAGATTTTGTGACCAT
*
17148705 TTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAAGC-AACTTGTAAAATCTCA
580 TTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAAGCAAACCTGTAAAATCTCA
* * * *
17148769 AATGCTCTTTAAGGGGGTGTGACTTATCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
645 AATGCTCTTTAAGGGGGTGTGAGTTATCAAGATTTAATGAGGGATAGGGGGCCAATATAAGGGCC
** ** ** *
17148834 AAGTACCAGCACCCATCGCACATCATGTGCTTACACCCCCCCGGCCAATCCGATCGTCGGAACCC
710 AAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCTCCGATCACCGGAACCA
* * * * * *
17148899 CAATGTCGTGGGTCAGGTTCTCC-AGCGATG--CC--CGA--G-G--CCGGC-ATG-----TGCT
774 CAATGCCATCGGTCAGGTTCTCCGA-CGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCG
* * * * * * * * * *
17148948 GCTACAACCCTCGTTCC-G-GTCC-G-ATCT--TAGACGGGGAA---T-GAA-C-TCTG
838 GC-ACCA-GCACATGCCTGAGCCCAGCATGTGCT-G-C-CGCAACCCTCGAACCATCCG
* *
17148995 TATGCTTAGGCTGGGAATGAACTCCGTAT-C-----C--C---T-AA----G--T--C-AAG---
1 -AT-CTTAGACTAGGAATGAACTCCGTATGCTTAGACTACGAATGAACTCTGTATGCCTAAGTCA
* * * * * * ** * * *
17149036 --CCACGAAACAAGCGTCCGGGCGCTCACCCGGCTAGATGGGCGGGATGCACAAGTCAGAGATCG
64 ACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGTAAGACGGGGATCG
** * *
17149099 ACCGGGTCCCCCTCTGCGTGCTGCCGATCCTATTGCCGCAACCCTCGGTCCGGTTCGATCTGAGA
129 ACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTTTGATCTTAGA
* ** * *
17149164 CTGGGAATGAACTCCGTATGCCTAAGCCAAACGATGAAATGAGCGGGCGGGCACTACGTCGGCCA
194 CTGGGAATGAACTCCGTATGCCTAAGCCAAACGACGAAACAAGCGGGCAGGCACTACGCCGGCCA
*
17149229 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGATGGGTTTAGGCACATCTTCATAT
259 GAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGATGGGTTTAGGCACATCTTCATAT
* * *
17149294 TTCTGTGTGCCAATGCCATTTTTACGGCTAGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
324 TTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* *
17149359 GAAGTTTCATGG-AGAAACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCA
389 GAAGTTTCATGGCA-AGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACCTTTTGCGGTTCA
17149423 GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGACCCAAACCTGGTAGACGTGATCCTTGTATT
453 GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGACCCAAACCTGGTAGACGTGATCCTTGTATT
**
17149488 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTAAAGTGTACAAGATTTTGTGACCATTTG
518 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACCCAAAGTGTACAAGATTTTGTGACCATTTG
* * * * *
17149553 AAAAAACTGTCCCCATTTCAGACCCTTTAATGGCTACTGGC-AGCAAACCTGTAAAATCTTAAGT
583 AAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAAGCAAACCTGTAAAATCTCAAAT
* * * *
17149617 GCTTTTTAAGGGGGTGTGAGTTCTCGAGATTTAATGAGGGATAGGGGGCCAATATAAGGGCTAAG
648 GCTCTTTAAGGGGGTGTGAGTTATCAAGATTTAATGAGGGATAGGGGGCCAATATAAGGGCCAAG
*
17149682 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGGCCCCCCGATCACCGGAA
713 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-----C--CCCTCCGATCACCGGAA
* * * ** *
17149747 CCACAATGCCGTTGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATA
771 CCACAATGCCATCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATG
* ** ** * *
17149812 CAGCACCAGCACATGCCTGAGCCCAGCATGTAATTTCGCAACCCTCGGACCGGTCCG
836 CGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGAACC-ATCCG
* *
17149869 ATGTTAGACTAGGAATGAACTCCGTATGCTTAGACTACGAATGAACTCTGTATGTCTAAGTCAAC
1 ATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTACGAATGAACTCTGTATGCCTAAGTCAAC
* * * * **
17149934 CCACGAAACGAGCGTGCGGGCACTCAGTCGACCAGAGGGGAGGGATGCGTAAGACGGGGAGCGGT
66 CCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGTAAGACGGGGATCGAC
* * * * * ** * **
17149999 TGGATCCCCCTCTGTGTGCTTCTGATCCTGCTGCTACAACCCTCGATCCGGTCAGATCTTAGACT
131 CGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTTTGATCTTAGACT
* * *
17150064 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGAACTACGC
196 GGGAATGAACTCCGTATGCCTAAGCCAAACGACGAAAC-A---AGCGGGCAGGC----ACTACGC
* * * * *
17150129 CGGCCAGAGAGACGGGATGCGCAAGTCGTTGATCGATAGGGTGGTAGGTGCGTTTAGGCACATCT
253 CGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGATGGGTTTAGGCACATCT
*
17150194 TCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
318 TCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * *
17150259 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTAAAACCTTTTACG
383 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACCTTTTGCG
* * * * * *
17150324 GTCCAGGATTTTTTAAAATTTTTTCAGAAGAAGTTTTGGCCCCAAACTTGGTAGACGTTATCCTT
448 GTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGACCCAAACCTGGTAGACGTGATCCTT
* * * * * *
17150389 GTATTTTTGTTGGCGTGCACAAAAAACTTCAGCCAAAAACTCGAAGTGTACAAAATTTTGTGACC
513 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACCCAAAGTGTACAAGATTTTGTGACC
* * *
17150454 ATTTGAAAAAAGTGTGCCCATTTCAGACACTTTAATGGCTACTGGC-AGAAAACCTGTAAAATCT
578 ATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAAGCAAACCTGTAAAATCT
* * * *
17150518 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
643 CAAATGCTCTTTAAGGGGGTGTGAGTTATCAAGATTTAATGAGGGATAGGGGGCCAATATAAGGG
17150583 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC-CCTGATCACCGGAAC
708 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCTCC-GATCACCGGAAC
* * * ** * * *
17150647 CCCAATGCCACCGGTTAGGTTCTCCGGTGATGCTCCGACGATGGTGACCCGATGAAGAAAAATGC
772 CACAATGCCATCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGC
* ** *
17150712 GGC-CCTAGCACATG-CTCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCGATCTG
837 GGCACC-AGCACATGCCT-GAGCCCAGCATGTGCTGCCGCAACCCTCGAACC-ATCCG
* *** ** * *
17150768 ATCTTAGACTGGGAATGAACTCAACATGCTTAGACTGGGAATGAACTCCGTATGGCTAAGTCAAC
1 ATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTACGAATGAACTCTGTATGCCTAAGTCAAC
* * * * ** * *
17150833 CCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAAGGGCGGGTTGCACAAGCCGGGGATCGGC
66 CCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGTAAGACGGGGATCGAC
** * * ** **
17150898 CGGGTCCCCCTCTATGTGCTGCCAATCCTACTGCCGCAACCCTCGGTCCAATCCGAT-TATAGAC
131 CGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTTTGATCT-TAGAC
* * * *
17150962 TGGGAATGAAGTCCGTAAGCCTAAGCCAACCGATGAAACAAGCAGGCTGGCGGGCGGGCAGGCAC
195 TGGGAATGAACTCCGTATGCCTAAGCCAAACGACGAAAC-A--A---------GCGGGCAGGCAC
* * * * * *
17151027 TACGTCGGCCAGAGAGACGGGTTGCGCAAGCCGTGGATCGATTGGGTGGTAGGTGGGTTTTGGCA
248 TACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGATGGGTTTAGGCA
17151092 CATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
313 CATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* *
17151157 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTT
378 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACCTT
** * *
17151222 TTTTGGTTCAGGATTTTTTAAAA-TTTTTCGGAAGGAGTTTTGG-CCCTAAACTTGGTAGACATG
443 TTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGACCC-AAACCTGGTAGACGTG
* * ** ** * * *
17151285 ATCCTTGTATTTTTGTTGGCATGCATAAAAAAGTTGGGCTAAAAATTCGATGTCTACAAGATTTT
507 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACCCAAAGTGTACAAGATTTT
* *
17151350 GCGACCATTTGAAAAAAGTGTCCCCATTTCAA-ACACTTTAATGGCTACTAGC-AGCAAACCTGT
572 GTGACCATTTGAAAAAAGTGTCCCCATTT-AAGACACTTTAATGGCTACTGGCAAGCAAACCTGT
* * * * *
17151413 AAAATCTCAAATGCT-TTTGAAGGTGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
636 AAAATCTCAAATGCTCTTT-AAGGGGGTGTGAGTTATCAAGATTTAATGAGGGATAGGGGGCCAA
* * *
17151477 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCTCACCCCCCCGACCCC-CCAATC
700 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCTCCGATC
* * * * * * *
17151541 GTCAGAAATC-CAATGTCGTCGGTCAGGTTCT-C--CG--G-T-----GATGGTGTCCCGACGAA
764 -ACCGGAACCACAATGCCATCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAA
* * * * * ***** *
17151594 -AAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCGGTCGCAATCCTCGGTTTGGTCTG
828 GAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTC-GAACCATCCG
* *** * * *
17151658 ATCTTAGACTGGGAATTCTCTCCATATGCTTAGACTAGGAATGAACTCTGTATACCTAAGTCAAC
1 ATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTACGAATGAACTCTGTATGCCTAAGTCAAC
* * ** * * * * * * **
17151723 CCATGAAATGAGCGTGCGGGCGTTCAGCAGGCCAGAGGGGCGTGATGTGCAAGCCTGGGATCGGT
66 CCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGTAAGACGGGGATCGAC
* * * * * * * *
17151788 TGGGTCCCCCTCTGTGTGCTGTCTATCCTACTACCACAACCCTCGGTCCGGTCTGATCTTAGACT
131 CGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTTTGATCTTAGACT
* * *
17151853 GGGAATGAACTCCGTATGCCTAAGCC-AACAAACGAAACGAGCGGGCGGACGGGCGGGCGGGTGC
196 GGGAATGAACTCCGTATGCCTAAGCCAAAC-GACGAAACAAGCGGGC--A------GGC----AC
*** * ** * *
17151917 TACGCCGATTAGAGAGACGGGATATGCAAGCCGTGGATCGATAGGGTGGCAGGTGGGTTTAGGCA
248 TACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGATGGGTTTAGGCA
* * *
17151982 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCGTGTAAATTCATACGATGGTCCCTTA
313 CATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * *
17152047 AGCGTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
378 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACCTT
* * * * * * *
17152112 TTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGAAGTGTTGGCCCCAAACTTTGTAGACGTGA
443 TTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGACCCAAACCTGGTAGACGTGA
***
17152177 TCCTTGTA-TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTGGAAGTGTACAAGATTTTG
508 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACCCAAAGTGTACAAGATTTTG
*
17152241 TGACCATTTGAAAAAAGTGTCCCAATTTAAGACACTTTAATGGCTACTGGC-AGCAAACCTGTAA
573 TGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAAGCAAACCTGTAA
* * * *
17152305 AATCTCAAATGCTCTTTAAGGGGG-GTGAGTTCTCGAGCTTTGATGAGGGATAGGGGGCCAATAT
638 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTATCAAGATTTAATGAGGGATAGGGGGCCAATAT
* * * **
17152369 AAGGGCCAAGTACCAGCACCCATTGCACATCATGTGTGCACACCCCCC-GCCCCCCCGATCGTCG
703 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCTCCGATCACCG
* * * * * * * * **
17152433 GAACCCCAATGCCACCGGTTAGGTTCTCCGGCGATGATCCGGTGATGGTGACTCGGTGAAGAAAA
768 GAACCACAATGCCATCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAA
* * * *
17152498 AAGTGGCACCAGCACATG-CTCGAGCCCAGCATGTGCTGCCGCAACCCTC-AGTCCAGTCTG
833 ATGCGGCACCAGCACATGCCT-GAGCCCAGCATGTGCTGCCGCAACCCTCGA-ACCA-TCCG
* * ** ** *
17152558 ATCTTAAACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCATATGCCTACGTCAAC
1 ATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTACGAATGAACTCTGTATGCCTAAGTCAAC
* * * * ** **
17152623 CCACGAAATGAACGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGACACACAAG-CTGGGGATCGA
66 CCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGTAAGAC-GGGGATCGA
* * * * * * ** *
17152687 TCGGGTCCCCCTCTGTGTGCTGCTGATCCTACTACCGCAACCCTCGATCCGGTCCGATCTTAGAG
130 CCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTTTGATCTTAGAC
* * *
17152752 TGGGAATGAACTCCGTATGCGTAAGCC-AACTGATGAAACGAACGGGCGGGTGGGCGGGCGGGCA
195 TGGGAATGAACTCCGTATGCCTAAGCCAAAC-GACGAAAC-AA-----------GCGGGCAGGCA
* * * * *
17152816 CTACGCCGGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGCTAGGTGTGTTTAGGC
247 CTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGATGGGTTTAGGC
* * * *
17152881 ACAAT-TTCATATTTATGCATGCCAATTCCATTTTTATGGCTTGTAAATTCATACAATGGTCCAT
312 AC-ATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * *
17152945 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTCTCACGATTTTTGAAACT
376 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACC
* * * * *
17153010 TTTTACGGTTC-GAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACT
441 TTTTGCGGTTCAG-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGACCCAAACCTGGTAGACG
* * * * * *
17153074 TGATCCTTGTATTTTTGCTGGCATGCACAAAACAATTCAGCAAAAAACTCGAAGTATACAAGATT
505 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACCCAAAGTGTACAAGATT
* *
17153139 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACATTAATGGCTACTGGC-AGCAAACCTG
570 TTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAAGCAAACCTG
* * * * *
17153203 TAAAATCTCAAATGCTCTTTAAGGTGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
635 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTATCAAGATTTAATGAGGGATAGGGGGCCAA
* *
17153268 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCAAACCCCCCCGGCCCC-CCTGAT
700 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCTCC-GAT
** * * * ** * * *
17153332 CGTCGAAACCCCAATACCGCCGGCCAGGTTCTCCGACGATGCTACGACGATGGTGCCCCGACGAA
763 CACCGGAACCACAATGCCATCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAA
* * * * ** *
17153397 G-AAAATACGGCACCAGCACATGCCCGAGCCCAGCACGTGCTGCCGCAACCTTCGGTCCGGTCCG
828 GAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGAACC-ATCCG
* * ** *
17153461 ATCTTAGACTGGGAAAGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
1 ATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTACGAATGAACTCTGTATGCCTAAGTCAAC
* * * * * * * *
17153526 GCACGAAACGAGCGTGCGGGCGCTCAGCAGGCCAGAGGGGCAGGATGTGCAAGCCGGGGATCAAC
66 CCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGTAAGACGGGGATCGAC
* * * * * *
17153591 CGGGTCCCCCTCTGCGTGTTGCCGATCCTGCTGCCACAACACTTGATCTGGTTTGATCTTAGACT
131 CGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTTTGATCTTAGACT
* * * *
17153656 GGGAATGAACTCTGTATGCCTAAGCCAACCAACGAAACGAGCAGACAGGCGGGCGGGCACTACGT
196 GGGAATGAACTCCGTATGCCTAAGCC-A--AACG--ACGA--A-ACAAGCGGGCAGGCACTACGC
* * * * *
17153721 CGGCCAAAGAGACGGGCTGCGCATGCCGTGGATCGATAGGGTGGTAGGT-GGTTTAGGCACATCT
253 CGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGATGGGTTTAGGCACATCT
* *
17153785 TCATATTTCTGCTTGCCAATGCCATTTTTATGTCTTGTAAATTCATACAATGGTCCCTTAAGCCT
318 TCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
** * * ** * * **
17153850 TCACGTGAAAATTCATGGCAAGACGACTCATTTTTTATTTTTCACAATTTTTAAAACTTTTTATG
383 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACCTTTTGCG
* * *
17153915 GTTCAGGATTTTTTAAAATATTTTT-GGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCT
448 GTTCAGGATTTTTTAAAAT-TTTTTCGGAAGGAGTTTTGGACCCAAACCTGGTAGACGTGATCCT
* * *
17153979 TGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
512 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACCCAAAGTGTACAAGATTTTGTGAC
* * * * *
17154044 CATTTTAAAAAGGTGTCCCAATTTCAGACAATTTAATGGCTACTGGC-AGCAAACCTGTAAAATC
577 CATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAAGCAAACCTGTAAAATC
* * * ** * *
17154108 TCAAATGCTCATTAAGGGTGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
642 TCAAATGCTCTTTAAGGGGGTGTGAGTTATCAAGATTTAATGAGGGATAGGGGGCCAATATAAGG
17154173 GCCAAGTACCAGCACCCATCGCACATCATGTG
707 GCCAAGTACCAGCACCCATCGCACATCATGTG
17154205 AACTCCGTAT
Statistics
Matches: 6830, Mismatches: 824, Indels: 424
0.85 0.10 0.05
Matches are distributed among these distances:
844 12 0.00
845 451 0.07
846 3 0.00
849 157 0.02
851 40 0.01
852 1 0.00
853 2 0.00
854 3 0.00
855 3 0.00
857 2 0.00
858 1 0.00
859 1 0.00
860 4 0.00
861 2 0.00
863 2 0.00
864 6 0.00
865 4 0.00
866 7 0.00
867 5 0.00
868 3 0.00
869 1 0.00
870 2 0.00
871 2 0.00
872 23 0.00
873 6 0.00
874 6 0.00
875 21 0.00
876 3 0.00
877 2 0.00
878 7 0.00
879 5 0.00
880 208 0.03
881 12 0.00
882 4 0.00
883 6 0.00
884 2 0.00
886 5 0.00
887 13 0.00
888 29 0.00
889 84 0.01
890 571 0.08
891 401 0.06
892 16 0.00
893 463 0.07
894 6 0.00
895 445 0.07
896 53 0.01
897 4 0.00
898 539 0.08
899 832 0.12
900 493 0.07
901 466 0.07
902 362 0.05
903 469 0.07
904 65 0.01
906 469 0.07
907 13 0.00
908 3 0.00
910 2 0.00
911 2 0.00
912 6 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (891 bp):
ATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTACGAATGAACTCTGTATGCCTAAGTCAAC
CCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGTAAGACGGGGATCGAC
CGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGGTTTGATCTTAGACT
GGGAATGAACTCCGTATGCCTAAGCCAAACGACGAAACAAGCGGGCAGGCACTACGCCGGCCAGA
GAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGATGGGTTTAGGCACATCTTCATATTT
CTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACCTTTTGCGGTTCAGGA
TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGACCCAAACCTGGTAGACGTGATCCTTGTATTTTT
GTTGGCATGCACAAAAAAATTCAGCTAAAAACCCAAAGTGTACAAGATTTTGTGACCATTTGAAA
AAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAAGCAAACCTGTAAAATCTCAAATGCT
CTTTAAGGGGGTGTGAGTTATCAAGATTTAATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
CAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCTCCGATCACCGGAACCACAATGCC
ATCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGC
ACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGAACCATCCG
Found at i:17148163 original size:26 final size:26
Alignment explanation
Indices: 17148125--17148179 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 26
17148115 CAATCCGATG
* *
17148125 TTAGACTAGGAATGAA-TTTCGTATGC
1 TTAGACTACGAATGAACTCT-GTATGC
17148151 TTAGACTACGAATGAACTCTGTATGC
1 TTAGACTACGAATGAACTCTGTATGC
17148177 TTA
1 TTA
17148180 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.35
Consensus pattern (26 bp):
TTAGACTACGAATGAACTCTGTATGC
Found at i:17149901 original size:26 final size:25
Alignment explanation
Indices: 17149865--17149923 Score: 84
Period size: 26 Copynumber: 2.4 Consensus size: 25
17149855 CTCGGACCGG
*
17149865 TCCG-ATGTTAGACTAGGAATGAAC
1 TCCGTATGTTAGACTACGAATGAAC
17149889 TCCGTATGCTTAGACTACGAATGAAC
1 TCCGTATG-TTAGACTACGAATGAAC
*
17149915 TCTGTATGT
1 TCCGTATGT
17149924 CTAAGTCAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
24 4 0.13
25 4 0.13
26 23 0.74
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.31
Consensus pattern (25 bp):
TCCGTATGTTAGACTACGAATGAAC
Found at i:17152589 original size:26 final size:26
Alignment explanation
Indices: 17152560--17152612 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17152550 CCAGTCTGAT
17152560 CTTAAACTAGGAATGAACTCCATATG
1 CTTAAACTAGGAATGAACTCCATATG
* *
17152586 CTTAGACTGGGAATGAACTCCATATG
1 CTTAAACTAGGAATGAACTCCATATG
17152612 C
1 C
17152613 CTACGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (26 bp):
CTTAAACTAGGAATGAACTCCATATG
Found at i:17153492 original size:26 final size:26
Alignment explanation
Indices: 17153463--17153515 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17153453 CCGGTCCGAT
17153463 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
*
17153489 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
17153515 C
1 C
17153516 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:17154021 original size:898 final size:896
Alignment explanation
Indices: 17148926--17154204 Score: 7056
Period size: 898 Copynumber: 5.9 Consensus size: 896
17148916 TTCTCCAGCG
* * ** * *
17148926 ATGCCCGAGGCCGGCATGTGCTGCTACAACCCTCGTTCCGGTCCGATCTTAGACGGGGAATGAAC
1 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAAC
** * * * * *
17148991 TCTGTATGCTTAGGCTGGGAATGAACTCCGTATCCCTAAGTCAAGCCACGAAACAAGCGTCCGGG
66 TCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
* * * * * * *
17149056 CGCTCACCCGGCTAGATGGGCGGGATGCACAAGTCAGAGATCGACCGGGTCCCCCTCTGCGTGCT
131 CGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGACCGGGTCCCCCTCTGTGTGCT
* * * * *
17149121 GCCGATCCTATTGCCGCAACCCTCGGTCCGGTTCGATCTGAGACTGGGAATGAACTCCGTATGCC
196 GCCGATCCTACTGCCACAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCC
* * * *
17149186 TAAGCC-A--AACG--ATGA--A-ATGAGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGC
261 TAAGCCAACCAACGAAACGAGCAGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
* **
17149243 GCAAGCCGTGGATCGATAGGGTGGTAGATGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAAT
326 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
* *
17149308 GCCATTTTTACGGCTAGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG-A
391 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * *
17149372 GAAACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAAT
456 -AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAAT
* * *
17149437 TTTTTCGGAAGGAGTTTTGGACCCAAACCTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
520 TTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
** *
17149502 CAAAAAAATTCAGCTAAAAACTTAAAGTGTACAAGATTTTGTGACCATTTGAAAAAACTGTCCCC
585 C-AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* * * *
17149567 ATTTCAGACCCTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTTAAGTGCTTTTTAAGGGGGT
649 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGT
* * *
17149632 GTGAGTTCTCGAGATTTAATGAGGGATAGGGGGCCAATATAAGGGCTAAGTACCAGCACCCATCG
713 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
** * **
17149697 CACATCATGTGCGCACACCCCCCGGCCCCCCGGCCCCCCGATCACCGGAACCACAATGCCGTTGG
778 CACATCATGTGCGCACA-----C--CCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGG
* * *
17149762 TCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATACAGCACCAGCAC
836 TCAGGTTCTCCGACGATGCTCCGACGATGGTGACCCGATGAAG-AAAATACGGCACCAGCAC
* ** ** * * *
17149824 ATGCCTGAGCCCAGCATGTAATTTCGCAACCCTCGGACCGGTCCGATGTTAGACTAGGAATGAAC
1 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAAC
* ** * *
17149889 TCCGTATGCTTAGACTACGAATGAACTCTGTATGTCTAAGTCAACCCACGAAACGAGCGTGCGGG
66 TCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
* * * * ** * * *** *
17149954 CACTCAGTCGACCAGAGGGGAGGGATGCGTAAGACGGGGAGCGGTTGGATCCCCCTCTGTGTGCT
131 CGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGACCGGGTCCCCCTCTGTGTGCT
* * * * *
17150019 TCTGATCCTGCTGCTACAACCCTCGATCCGGTCAGATCTTAGACTGGGAATGAACTCCGTATGCC
196 GCCGATCCTACTGCCACAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCC
* * * *
17150084 TAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGAACTACGCCGGCCAGAGAGACGGGATGC
261 TAAGCCAACCAACGAAACGAGCAGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
* * * * *
17150149 GCAAGTCGTTGATCGATAGGGTGGTAGGTGCGTTTAGGCACATCTTCATATTTCTACGTGCCAAT
326 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
17150214 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
391 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * * * *
17150279 AGACGACTCGTTTTTTATTTTTCATGATTTTTAAAACCTTTTACGGTCCAGGATTTTTTAAAATT
456 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATT
* * *
17150344 TTTTCAGAAGAAGTTTTGGCCCCAAACTTGGTAGACGTTATCCTTGTATTTTTGTTGGCGTGCAC
521 TTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* * *
17150409 AAAAAACTTCAGCCAAAAACTCGAAGTGTACAAAATTTTGTGACCATTTGAAAAAAGTGTGCCCA
586 AAAAAA-TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
*
17150474 TTTCAGACACTTTAATGGCTACTGGCAGAAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
650 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTG
17150539 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
714 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
** * *
17150604 ACATCATGTGCGCACA-CCCCCCGGCCCCCCTGATCACCGGAACCCCAATGCCACCGGTTAGGTT
779 ACATCATGTGCGCACACCCCCCCGGCCCCCC-GATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
** *
17150668 CTCCGGTGATGCTCCGACGATGGTGACCCGATGAAGAAAAATGCGGC-CCTAGCAC
843 CTCCGACGATGCTCCGACGATGGTGACCCGATGAAG-AAAATACGGCACC-AGCAC
* * * *
17150723 ATGCTCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAAC
1 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAAC
* * * *
17150788 TCAACATGCTTAGACTGGGAATGAACTCCGTATGGCTAAGTCAACCCATGAAACGAGCGTGCGGG
66 TCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
* * * *
17150853 CGCTCAGCCGGCCAGAAGGGCGGGTTGCACAAGCCGGGGATCGGCCGGGTCCCCCTCTATGTGCT
131 CGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGACCGGGTCCCCCTCTGTGTGCT
* * * ** * *
17150918 GCCAATCCTACTGCCGCAACCCTCGGTCCAATCCGAT-TATAGACTGGGAATGAAGTCCGTAAGC
196 GCCGATCCTACTGCCACAACCCTCGATCCGGTCCGATCT-TAGACTGGGAATGAACTCCGTATGC
* * * * * *
17150982 CTAAGCCAACCGATGAAACAAGCAGGCTGGCGGGCGGGCAGGCACTACGTCGGCCAGAGAGACGG
260 CTAAGCCAACCAACGAAAC--G-A-GCAGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGG
* * * *
17151047 GTTGCGCAAGCCGTGGATCGATTGGGTGGTAGGTGGGTTTTGGCACATCTTCATATTTCTGCGTG
321 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
17151112 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
386 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * **
17151177 TGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTTTGGTTCAGGATTTTTTA
451 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTA
* * *
17151242 AAA-TTTTTCGGAAGGAGTTTTGGCCCTAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCA
516 AAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
* ** * * * *
17151306 TGCATAAAAAAGTTGGGCTAAAAATTCGATGTCTACAAGATTTTGCGACCATTTGAAAAAAGTGT
581 TGCACAAAAAA-TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
* *
17151371 CCCCATTTCAAACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCT-TTTGAAG
645 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAG
17151435 GTGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
709 G-GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * * * ** * *
17151500 CATCGCACATCATGTGCGCTCACCCCCCCGACCCCCCAATCGTCAGAAATCCAATGTCGTCGGTC
773 CATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTC
* * *
17151565 AGGTTCT-C--CG--G-T-----GATGGTGTCCCGACGAAAAAAATACGGCACCAGCAC
838 AGGTTCTCCGACGATGCTCCGACGATGGTGACCCGATGAAGAAAATACGGCACCAGCAC
* * * ** * ***
17151613 ATGCCCGAGCCCAGCATGTGCGGTCGCAATCCTCGGTTTGGTCTGATCTTAGACTGGGAATTCTC
1 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAAC
* * * * *
17151678 TCCATATGCTTAGACTAGGAATGAACTCTGTATACCTAAGTCAACCCATGAAATGAGCGTGCGGG
66 TCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
* * * ** * ***
17151743 CGTTCAGCAGGCCAGAGGGGCGTGATGTGCAAGCCTGGGATCGGTTGGGTCCCCCTCTGTGTGCT
131 CGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGACCGGGTCCCCCTCTGTGTGCT
* * * * *
17151808 GTCTATCCTACTACCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCC
196 GCCGATCCTACTGCCACAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCC
* * ** ***
17151873 TAAGCCAACAAACGAAACGAGCGGGCGGACGGGCGGGCGGGTGCTACGCCGATTAGAGAGACGGG
261 TAAGCCAACCAACGAAACGA----GCAGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGG
** *
17151938 ATATGCAAGCCGTGGATCGATAGGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGC
322 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGC
* * *
17152003 CAATGCCATTTTTATGGCGTGTAAATTCATACGATGGTCCCTTAAGCGTTCACGTGAAGTTTCAT
387 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* *
17152068 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAA
452 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAA
* * *
17152133 AATTTTTTCAGAAGAAGTGTTGGCCCCAAACTTTGTAGACGTGATCCTTGTA-TTTTGTTGGCAT
517 AATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
*
17152197 GCACAAAAAAATTCAGCTAAAAACTGGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
582 GCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* *
17152262 CCAATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
646 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* *
17152327 GGGTGAGTTCTCGAGCTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
711 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * * *
17152392 TGCACATCATGTGTGCACA-CCCCCCGCCCCCCCGATCGTCGGAACCCCAATGCCACCGGTTAGG
776 CGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGG
* * ** * * * *
17152456 TTCTCCGGCGATGATCCGGTGATGGTGACTCGGTGAAGAAAAAAGTGGCACCAGCAC
841 TTCTCCGACGATGCTCCGACGATGGTGACCCGATGAAGAAAATA-CGGCACCAGCAC
* * * * * *
17152513 ATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCAGTCTGATCTTAAACTAGGAATGAAC
1 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAAC
* * * * *
17152578 TCCATATGCTTAGACTGGGAATGAACTCCATATGCCTACGTCAACCCACGAAATGAACGTGCAGG
66 TCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
** * *
17152643 CGCTCAGCCGGCCAGAGGGGCGGGACACACAAGCTGGGGATCGATCGGGTCCCCCTCTGTGTGCT
131 CGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGACCGGGTCCCCCTCTGTGTGCT
* * * * *
17152708 GCTGATCCTACTACCGCAACCCTCGATCCGGTCCGATCTTAGAGTGGGAATGAACTCCGTATGCG
196 GCCGATCCTACTGCCACAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCC
** * * **
17152773 TAAGCCAACTGATGAAACGAACGGGCGGGTGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGG
261 TAAGCCAACCAACGAAACG-A---GCAGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGG
* * * *
17152838 ATGCGCAAGTCGTGGATCGATAGGGTGCTAGGTGTGTTTAGGCACAAT-TTCATATTTATGCATG
322 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC-ATCTTCATATTTCTGCATG
* *
17152902 CCAATTCCATTTTTATGGCTTGTAAATTCATACAATGGTCCATTAAGCCTTCACGTGAAGTTTCA
386 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
*
17152967 TGGCAAGACGACTCGTTTTCTATTTCTCACGATTTTTGAAACTTTTTACGGTTC-GAGATTTTTT
451 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAG-GATTTTTT
* *
17153031 AAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACTTGATCCTTGTATTTTTGCTGGC
515 AAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
* *
17153096 ATGCACAAAACAATTCAGCAAAAAACTCGAAGTATACAAGATTTTGTGACCATTTGAAAAAAGTG
580 ATGCACAAAA-AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
*
17153161 TCCCCATTTCAGACACATTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
644 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
17153226 GTGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
709 G-GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * * * *
17153291 CATCGCACATCATGTGTGCAAACCCCCCCGGCCCCCCTGATCGTCGAAACCCCAATACCGCCGGC
773 CATCGCACATCATGTGCGCACACCCCCCCGGCCCCCC-GATCGTCGGAACCCCAATGCCGCCGGT
* * *
17153356 CAGGTTCTCCGACGATGCTACGACGATGGTGCCCCGACGAAGAAAATACGGCACCAGCAC
837 CAGGTTCTCCGACGATGCTCCGACGATGGTGACCCGATGAAGAAAATACGGCACCAGCAC
* * *
17153416 ATGCCCGAGCCCAGCACGTGCTGCCGCAACCTTCGGTCCGGTCCGATCTTAGACTGGGAAAGAAC
1 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAAC
* *
17153481 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACGCACGAAACGAGCGTGCGGG
66 TCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
* * ** * * *
17153546 CGCTCAGCAGGCCAGAGGGGCAGGATGTGCAAGCCGGGGATCAACCGGGTCCCCCTCTGCGTGTT
131 CGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGACCGGGTCCCCCTCTGTGTGCT
* * * * ** *
17153611 GCCGATCCTGCTGCCACAACACTTGATCTGGTTTGATCTTAGACTGGGAATGAACTCTGTATGCC
196 GCCGATCCTACTGCCACAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCC
* * * *
17153676 TAAGCCAACCAACGAAACGAGCAGACAGGCGGGCGGGCACTACGTCGGCCAAAGAGACGGGCTGC
261 TAAGCCAACCAACGAAACGAGCAGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
* *
17153741 GCATGCCGTGGATCGATAGGGTGGTAGGT-GGTTTAGGCACATCTTCATATTTCTGCTTGCCAAT
326 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
* **
17153805 GCCATTTTTATGTCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAAATTCATGGCA
391 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * * * *
17153870 AGACGACTCATTTTTTATTTTTCACAATTTTTAAAACTTTTTATGGTTCAGGATTTTTTAAAATA
456 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAAT-
* *
17153935 TTTTT-GGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
520 TTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* * *
17153999 CAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTTAAAAAGGTGTCCCA
585 CAAAA-AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* *
17154064 ATTTCAGACAATTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCATTAAGGGTGT
649 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG-GT
*
17154129 GTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
713 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
17154194 CACATCATGTG
778 CACATCATGTG
17154205 AACTCCGTAT
Statistics
Matches: 3843, Mismatches: 486, Indels: 104
0.87 0.11 0.02
Matches are distributed among these distances:
887 1 0.00
888 41 0.01
889 81 0.02
890 582 0.15
891 72 0.02
893 1 0.00
894 1 0.00
896 1 0.00
897 4 0.00
898 626 0.16
899 394 0.10
900 512 0.13
901 142 0.04
902 357 0.09
903 497 0.13
904 60 0.02
905 6 0.00
906 464 0.12
907 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (896 bp):
ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAAC
TCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
CGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGACCGGGTCCCCCTCTGTGTGCT
GCCGATCCTACTGCCACAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCC
TAAGCCAACCAACGAAACGAGCAGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATT
TTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTG
AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
ATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
CGACGATGCTCCGACGATGGTGACCCGATGAAGAAAATACGGCACCAGCAC
Found at i:17155795 original size:26 final size:27
Alignment explanation
Indices: 17155759--17155812 Score: 85
Period size: 26 Copynumber: 2.0 Consensus size: 27
17155749 CAGTCATGAT
17155759 CTTAGACTGGGAAT-G-AACTCCGTATG
1 CTTAGACTGGGAATGGAAACT-CGTATG
17155785 CTTAGACTGGGAATGGAAACTCGTATG
1 CTTAGACTGGGAATGGAAACTCGTATG
17155812 C
1 C
17155813 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
26 14 0.54
27 8 0.31
28 4 0.15
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.26
Consensus pattern (27 bp):
CTTAGACTGGGAATGGAAACTCGTATG
Found at i:17156538 original size:26 final size:26
Alignment explanation
Indices: 17156509--17156561 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17156499 CCGGTCCGAT
17156509 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
* *
17156535 CTTAGATTTGGAATGAACTCTGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
17156561 C
1 C
17156562 CCAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.34
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:17157441 original size:26 final size:26
Alignment explanation
Indices: 17157412--17157464 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17157402 CCGGTCCAAT
17157412 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
17157438 CTTAGACTTGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17157464 C
1 C
17157465 CCAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17157585 original size:903 final size:898
Alignment explanation
Indices: 17155785--17163070 Score: 9105
Period size: 903 Copynumber: 8.2 Consensus size: 898
17155775 ACTCCGTATG
* * * **
17155785 CTTAGACTGGGAATGGAAAC-TCGTATGCCTAAGTCAACCCACAAAAACGAGCGTACGGGCGGGC
1 CTTAGACTGGGAAT-G-AACTTCGTATGCCTAAGCCAACCGAC-GAAACGAGCGGGCGGGCGGGC
* ** * * *
17155849 GGCCACTACATCGACCAGAGAGAATGGGATGCGCAAGCCGTGGATCGATAGGGGTGGTAAGGTGG
63 GGGCACTACGCCGGCCAGAGAG-ACGGGATGCGCAAGCTGTGGATCGATA-GGGTGGT-AGGT-G
* * *
17155914 GGTTT-GGCA-AACTTCCATATTTTTGCATGGCCAATGCCATTTTTATGGCTTGTGAATTCATAC
124 GGTTTAGGCACATCTT-CATATTTCTGCAT-GCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* *
17155977 AATAGTCCCTTAAGCCTTCACGTGAAATTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
187 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
* * * **
17156042 TTCCAAAACTTTTTGGGGTTCGGGATTTTTTAAAATACTTTCGGAAAGG-GTTTTGGCCCCAAAC
252 TTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTC-GAAAGGAGTTTTGGCCCCAAAC
* * * * *
17156106 TTGGTAGACGTGATCCTTGAATTTTTGTTGGTATGCATAAAAAAATTCAGCTAAAAACTTGATGT
316 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* *
17156171 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTCAATGGCTACTGGCA
381 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* *
17156236 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGATTTGATGGGGGATA
446 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* *
17156301 GCGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCTTGTGCGTACACCCCCCTCCG
511 G-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC-CCG
* *
17156366 GCCACCCTGATCGTTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGT
573 GCC-CCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGT
* * *
17156431 TCCCCAGTGAAGAAAAATGCGGCATCAGCACATGCCTGAGCCCAGCATGTGCTGTCGCAACCCTT
637 GCCCC-GTGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGTCGCAACCCTC
* * *
17156496 GGTCCGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGATTTGGAATGAACTCTGTATG
701 GGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATG
* ** ** *
17156561 CCCAAGTCAACCCACGAAACGAGCGTGCGGGCATTCAGCCACCCAGAGGGGCGGGATGCGCAAGC
766 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGC
* * * * * * *
17156626 TGGGGATCAGCCGGGTCCCCCTTTGCATGCTGCCGATCCTGCTGCCGCATCCCTCAGTCCGGTCC
831 CGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCTGATCCTGCTGCCGCAACCCTCAGTCCGGT-C
**
17156691 AAAT
895 TGAT
*
17156695 -TTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGAGGGCGGG
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
* * * *
17156759 CACTGCGCCGGCCAGAGAGACGGGATGCGCAGGCTGTGGATCGATAGGGTGGTAGGTGCGTATAG
66 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAG
17156824 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
131 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* *
17156889 TTAAGCCTTCACGTGAAATTTCATGGCAAGACGACTCGGTTTCTATTTTTCATGATTTTCAAAAC
196 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAAC
* * * *
17156954 TTTTTTGCTGTTCGAGATTTTTTAAAATTTTTTCAAAAGAAGTTTTGGCCCCAAACCTGGTAGAC
261 -TTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * * ** *
17157019 GTGATCCTTGTTTTTTTGTTGGTATGCACAAAATAATTCAATTGAAAACTCGAAGTGTACAAGAT
325 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* * *
17157084 TTTGTGACCATTTGAAAAAAGTGTCCCCGTTTCAGACACTTTAATGGCTACTGGCAGGAAAGCTG
390 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
17157149 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
455 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * *
17157214 TATAAGGTCCAAGTACCAGCACCCATCGCACATCTTGTGCGCACACCCCCCTCTGGCCACCCTGA
520 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-C-GGCC-CCCCGA
* *
17157279 TCGTTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTTCCCCAGTGA
582 TCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCC-GTGA
* * * *
17157344 AGAAAAATGCGGCATCAGCACATGCTTGCGCCCAGCATGTGCTGTCGCAACCCTTGGTCCGGTCC
646 AGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCC
* * *
17157409 AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTTGGAATGAACTCTGTATGCCCAAGTCAA
711 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAA
* ** * *
17157474 CCCACGAAAAGAGCGTGCGGGCATTCAGCCGCCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGG
776 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGG
* * * * ** *
17157539 TCGGGTCCCCCTTTGCATGCTGCTGATCCTGCTGCCGCATCCCTCAGTCCAGTCCAAA
841 TCGGGTCCCCCTCTGCGTGCTGCTGATCCTGCTGCCGCAACCCTCAGTCCGGTCTGAT
17157597 CTTAGACTGGGAATGAACTT-GATATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGG
1 CTTAGACTGGGAATGAACTTCG-TATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGG
** * * *
17157661 GCACTGTGCCGGCCAGAGAGACGGGATGCCCAAGCTGTGGATCGATAGGGTGGTAGGTGCGTATA
65 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTA
17157726 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
130 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* *
17157791 CTTAAGCCTTCACGTGAAATTTCATGGCAAGACGACTCGGTTTCTATTTTTCATGATTTTCAAAA
195 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAA
* * * *
17157856 CTTTTTTGCTGTTCGAGATTTTTTAAAATTTTTTCAAAAGAAGTTTTGGCCCCAAACCTGGTAGA
260 C-TTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * * ** *
17157921 CGTGATCCTTGTTTTTTTGTTGGTATGCACAAAATAATTCAATTGAAAACTCGAAGTGTACAAGA
324 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* *
17157986 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGGAAAGCT
389 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* *
17158051 ATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTCATGAGGGATAGGGGGCCA
454 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
17158116 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC-GCCCCCCGATC
519 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATC
* * *** * *
17158180 ATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAATGATGCTTCGGTGATGGTGCCTCGGTGAAG
584 GTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCC-CCGTGAAG
* * ** *
17158245 AAAAATGTGACACCAGCACACACCCGAG-CC--C-TGTGCTGTCGCAACCCT---T---G---G-
648 AAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGA
*
17158296 --TT----T--G---G---TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
713 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACC
* * ***
17158345 CACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGTGCGAGATGCGCAAGCCGGGGATCAACC
778 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGGTC
* * * *
17158410 TGGTGCCCCTCTGCGTGCTG-TCGATCCTGCTGCTGCAACCCTCAGTCTGGTCTGAT
843 GGGTCCCCCTCTGCGTGCTGCT-GATCCTGCTGCCGCAACCCTCAGTCCGGTCTGAT
* ** *
17158466 CTTAGACTGGGAATGAA-TTCCGTATGCCTAAGCCAACCGACGAAATGA----GTAGGCGGGCGA
1 CTTAGACTGGGAATGAACTT-CGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGG
* * *
17158526 GCACTACGCTGGCCAGAAAGACGGGATGCGCAAG-TCGTGCATCGATAGGGTGGTAGGTGGGTTT
65 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCT-GTGGATCGATAGGGTGGTAGGTGGGTTT
*
17158590 AGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG-C
129 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * * * *
17158654 CCTTTAAGCCTTCACGTGAAGTTTCTTGGCAGGACGACTCGTTTTCTATTTTTCACGCTTTTCGA
194 CC-TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAA
* * * * *
17158719 AACTTTTTGCGGTACGAGATTTTTCAAAATTTTTTCGGAAGGACTTTTTGCCCCAAACTTGGTAG
258 AACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAG
* * *
17158784 ACGTGATTCTTGTATTTTTGTTGGCATGCAAAAAAAAAAGTCAGCTAAAATA-TCGAAGTGTACA
323 ACGTGATCCTTGTATTTTTGTTGGCATGC-ACAAAAAAATTCAGCTAAAA-ACTCGAAGTGTACA
*
17158848 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGCCAGCAAA
386 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * * * *
17158913 CCTATAAATTCTCAAATGCTATTTAA-GGGGTGTGTGTTCTCAAGGTTTGATGAGGGATAGGGGG
451 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * ** *
17158977 CCAATATAAAGGCCAAGTACCAGCACCAATCATACATCATGTGCACACA-CCCCCCGGCCCCCCG
516 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCG
* * * * **
17159041 ATCGCCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGTTGCTCCGGCAATGGTGCCCCGGTG
581 ATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCC-GTG
* ** *
17159106 AAGAAAAATGTGGCACCAATACATG-TTCGAGCCCAGCATGTGCTG-CTGCAA-CC-C--T--GG
645 AAGAAAAATGCGGCACCAGCACATGCCT-GAGCCCAGCATGTGCTGTC-GCAACCCTCGGTCCGG
* * *
17159163 ---G-TC-----C-----A-G---TCCG-AT-CTTAGACTGGGAATAAACTCCGTACGCCTAAGT
708 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGT
* * * * * * *
17159208 CAACCAACCAAACGAGCGTGCGGGCGCTCGGTCGGCCAGAGGGGTGAGATGCACAAGCCAGGGAT
773 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGAT
* * * * * * * *
17159273 CGGCCGGGTCCCCCTCTGCATGTTGCCGATCCTGCTACCGCAACCCTCGGTCCGATCCGAT
838 CGGTCGGGTCCCCCTCTGCGTGCTGCTGATCCTGCTGCCGCAACCCTCAGTCCGGTCTGAT
* * * * *
17159334 CTTAGACTAGGAATGAACTCCATATGCCTAAGCCAATCGACGAAACGA----GTGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
* ** *
17159395 CACTACGTCGGCCAGAGAGATAGGATGCGCAAGCTGTGGATTGATAGGGTGGTAGGTGGGTTTAG
66 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * * *
17159460 GCACATCTTCATATTTCTGCATGCTAATGCCATTTTTATGGTTTGTAAGTTCATACCATGGTCCC
131 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
**
17159525 TTAA-CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
196 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAAC
* * * * * *
17159589 TTTTTGCGGTTCGTGATTTTTTAAAATTTTTTTGGATGGACTTTTGGCCCCAAACATGGTAGA-G
261 TTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACG
** *
17159653 TGATCCTTGTATTTTTGTTGGCATGCGTAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATT
326 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
*
17159718 TTGTGACCATTTGAAAAAATTGT-CCCATTTTCAGACACTTTAATGGCTACTGGC-GTCAAACCT
391 TTGTGACCATTTGAAAAAAGTGTCCCCA-TTTCAGACACTTTAATGGCTACTGGCAG-CAAACCT
*
17159781 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGTGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
454 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * * *
17159846 ATATAAGGGCCAAGTACTAGCACCCATCACACATCATGTGCGCACTCCCCCCCGGCCCCCCCAAT
519 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCCCCGAT
* ** * *
17159911 CGTCGGAACCCCAATGCCATCGGTTTGGTTCTCCGACGATGCTTCGAAGATGGTGCCCCGACGAT
583 CGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGC-TC-----CGGT--------GAT
* * **
17159976 GGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCAAGCCCAGCATGTGCTG-CTGCAAC
634 GGTGCCCCG-TGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGTC-GCAAC
* ** * * * * * *
17160040 CCTCGGACCTATCCGATCTTAGACTCGGAATAAACTCCTTATGCTTATACTGGGATTGAACTCCG
697 CCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTG
* * * * * * * * *
17160105 TATGCCTAAGTCAACCCACGAAACGAGCATGTGGGTGTTCAGCCTGCCAGAAGGGTGGGATGCAC
762 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGC
* * * * * ** * ** *
17160170 AAGCCGAGGATCGATCGGTTCCCCCACTACGTGCTATTGATCCTGCTGTCATAACCCTCGGTCCG
827 AAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCTGATCCTGCTGCCGCAACCCTCAGTCCG
17160235 GTCTGAT
892 GTCTGAT
* * * *
17160242 CTTAAACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCAGGCGGGCGTG
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGC--G--GGCGGGCGGG
* * *
17160307 CGGGCACTGCGCCGACCAGAGAGACGGGATGCGCAAG-TCGTGGATCGATAGAGTGGTAGGTGGG
62 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCT-GTGGATCGATAGGGTGGTAGGTGGG
* * *
17160371 TTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGTTTGTAAATTCATACAACG
126 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * *
17160436 GTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAACACGACTCGTTTTTTATTTTTCAGGATTTTC
191 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTC
* * * * *
17160501 AAAACGTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTAGT
256 AAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGT
* * * * * *
17160566 AGACGTGATTCTTGTATTTTT-TTGGCGTGCACAAAAAAATTCAGTTAAAAACTTGAAATATACA
321 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
17160630 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCGACTGACAGCAAA
386 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * *
17160695 CCTATAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGG
451 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * * *
17160760 CCAATATAAGGGCCAAGTACCAGCACCCATCGCATATCATGGGCGCACA-CCCCCTGGCCCCCCT
516 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCG
* * * *
17160824 ATCATCGGAACCCCAATGCCGTCGATCAGGTTCTCTGACGATGCTCCGGTGATGGTGCCCCGATG
581 ATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCCG-TG
** * ** ** * * * *
17160889 AAGAAAGTTACGATACCAGCACATGCCCAAGCCCAGCATGTGTTGTCACAACCCTCAGTCTGGTC
645 AAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTC
* * * *
17160954 TGATCTTAGACTAGGAATGAACTACGTATGCTTAGACTGGGAATGTACT-TCGTATGCCTAAGTC
710 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCT-GTATGCCTAAGTC
* * * * * *
17161018 AACCCATGATACGAGCGTGCGGGTGCTCAACCGGCCAGAGGGGC-AGGATGCGCAAGTCGAGGAT
774 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGA-GATGCGCAAGCCGGGGAT
* * * * * * * *
17161082 CGATCGAGTCCCCCTCCGTGTGCTG-TCGATCCTACTGTCAG-AACCCTCAATTCGGT-TGGAT
838 CGGTCGGGTCCCCCTCTGCGTGCTGCT-GATCCTGCTG-CCGCAACCCTCAGTCCGGTCT-GAT
* * * * *
17161143 CTTAGACTGGGAATGACCTCCGTATGCCTAAGCCAACCGATGAAATGAGTGGGCGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
** * * * * * *
17161208 TGCTCCGCCTGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTCAT
66 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* *
17161273 GCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGACCC
131 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * * *
17161338 TTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTTTATTTTTCACGATTTTCAAAAA
196 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAAC
* * **
17161403 TATTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTATCCCCAAACTTGGTAGACG
261 TTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * *
17161468 TGATCCCT-TATTTTTGTTTGCCTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
326 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* * * * *
17161532 TTGTGACCATTTGAAAAAAATGTCCCCAATTCAGACACTTTAATGCCTACTCGCAACAAACCTGT
391 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
*
17161597 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGGCCAAT
456 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
*
17161662 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCTCCCTCGATCG
521 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGC-CCCCCGATCG
* * * * *
17161727 CCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCAGCGATGGTGCCCCGACGAAGA
585 TCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCCG-TGAAGA
* ** * * * *
17161792 AAAATACGGCACCAGCACATGCCTGAGCCCAGCATGTGCTACCACAACCCTCGATCTGGTCTGAT
649 AAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGAT
* * * * *
17161857 CTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGCAATGAACTTTCTATGCCTAAGTAAACCC
714 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCC
* * * * * *
17161922 ACAAAACGTGCGTGCAGGCGCTCAACCGGCCAGAGGGGCGAGATGTGCAAGCCGGGGATCGGTCA
779 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGGTCG
* * * * * **
17161987 GGTCCCCCTCTGTGTGCTACTAATCCTGCTGCCGCAACCCTCGGTCCAGTCCAAT
844 GGTCCCCCTCTGCGTGCTGCTGATCCTGCTGCCGCAACCCTCAGTCCGGTCTGAT
*
17162042 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
17162107 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAG
66 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAG
17162172 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
131 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * *
17162237 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATATTCGAAAC
196 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAAC
* * *
17162302 TTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGAAAGGAGTTTT-GCCCCAAACTTGGTAGACA
261 TTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * *
17162366 TGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAACTAAAAACTCGAAGTGTACACGATT
326 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* *
17162431 TTGCGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAACTGT
391 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* *
17162496 ACAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGAATAGGGGGCCAAT
456 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* *
17162561 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGGGCGCA-A-CCCCCCGGCCCCTCCGATCA
521 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCC-CCGATCG
* *
17162624 TCAGAACCCCAATGCCG-CTGGTCAGGTTCT-C--CGA-----C---GATGGTGCCCCGACGAAG
585 TCGGAACCCCAATGCCGTC-GGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCCG-TGAAG
* * * * ** * *
17162677 AAAAAAGCGACGCTAGCACATGCCTGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCCAA
648 AAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGA
* * * *
17162742 TCTTAGACTGGGAATGAACTCTGTATGCTTAGAATGGGAATGAACTCCGTATGCCTAAATCAACC
713 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACC
* * * *
17162807 CACGAAATGAGCGTGCGGGCGCTCAGCCGGCTAGAGGGGC-AGATGCGCAGGCTGGGGATCGGTC
778 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGGTC
* * * *
17162871 GGGTCCCCCTCTGCGTGCTG-TCGATCCTACTGTCGTAACCCTCAGTCTGGTCTGAT
843 GGGTCCCCCTCTGCGTGCTGCT-GATCCTGCTGCCGCAACCCTCAGTCCGGTCTGAT
* * * * * * *
17162927 CTTAGACTGGGAATAAACATCATATGCCTACGCCAATCGACG--AC-A-TGAGCGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
* * * *
17162988 CACTACTCCGGCTAGAGAGACAGGATGCGCAAGCTGTGGATCGATAGGGTAGTAGGTGGGTTTAG
66 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAG
17163053 GCACATCTTCATATTTCT
131 GCACATCTTCATATTTCT
17163071 TTTCTATTTT
Statistics
Matches: 5637, Mismatches: 624, Indels: 259
0.86 0.10 0.04
Matches are distributed among these distances:
863 7 0.00
864 251 0.04
865 404 0.07
866 107 0.02
867 124 0.02
868 369 0.07
869 182 0.03
870 3 0.00
871 4 0.00
874 3 0.00
877 1 0.00
879 1 0.00
881 94 0.02
882 55 0.01
883 6 0.00
884 2 0.00
885 99 0.02
886 165 0.03
889 2 0.00
891 1 0.00
892 3 0.00
894 3 0.00
895 17 0.00
896 13 0.00
897 493 0.09
898 37 0.01
899 839 0.15
900 9 0.00
901 258 0.05
902 13 0.00
903 1034 0.18
904 242 0.04
905 11 0.00
906 27 0.00
907 39 0.01
908 190 0.03
909 16 0.00
914 2 0.00
915 45 0.01
916 138 0.02
917 307 0.05
918 21 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAG
GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAAC
TTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACG
TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGT
CGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCCGTGAAGAAA
AATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCT
TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCAC
GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGGTCGGG
TCCCCCTCTGCGTGCTGCTGATCCTGCTGCCGCAACCCTCAGTCCGGTCTGAT
Found at i:17159978 original size:14 final size:14
Alignment explanation
Indices: 17159959--17159988 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
17159949 ATGCTTCGAA
17159959 GATGGTGCCCCGAC
1 GATGGTGCCCCGAC
17159973 GATGGTGCCCCGAC
1 GATGGTGCCCCGAC
17159987 GA
1 GA
17159989 AGAAAAATGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.17, C:0.33, G:0.37, T:0.13
Consensus pattern (14 bp):
GATGGTGCCCCGAC
Found at i:17160996 original size:26 final size:26
Alignment explanation
Indices: 17160958--17161010 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17160948 CTGGTCTGAT
17160958 CTTAGACTAGGAATGAACTACGTATG
1 CTTAGACTAGGAATGAACTACGTATG
* * *
17160984 CTTAGACTGGGAATGTACTTCGTATG
1 CTTAGACTAGGAATGAACTACGTATG
17161010 C
1 C
17161011 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTACGTATG
Found at i:17162210 original size:899 final size:893
Alignment explanation
Indices: 17158307--17163070 Score: 5861
Period size: 899 Copynumber: 5.3 Consensus size: 893
17158297 TTGGTCCGAT
*
17158307 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
17158372 CGGCCAGAGGTGCGAGATGCGCAAGCCGGGGATCAACCTGGTGCCCCTCTGCGTGCTGTCGATCC
66 CGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGATC-GGTCCCCCTCTGCGTGCTGTCGATCC
* * *
17158437 TGCTGCTGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAATTCCGTATGCCTAAGCCAA
130 TGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* ** * * *
17158502 CCGACGAAATGA--GTAGGCGGGCGAGCACTACGCTGGCCAGAAAGACGGGATGCGCAAG-TCGT
195 CCGACGAAACGAGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCT-GT
* *
17158564 GCATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTT
259 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
* *
17158629 ATGGCTTGTAAATTCATACAATGG-CCCTTTAAGCCTTCACGTGAAGTTTCTTGGCAGGACGACT
324 ATGGCTTGTAAATTCATACAATGGTCCC-TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * *
17158693 CGTTTTCTATTTTTCACGCTTTTCGAAACTTTTTGCGGTACGAGATTTTTCAAAATTTTTTCGGA
388 CGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGA
* * *
17158758 AGGACTTTTTGCCCCAAACTTGGTAGACGTGATTCTTGTATTTTTGTTGGCATGCAAAAAAAAAA
453 AGGA-GTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC-ACAAAAAAA
*
17158823 GTCAGCTAAAATA-TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
516 TTCAGCTAAAA-ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * * *
17158887 ACACTTTAATGGCTACTGCCAGCAAACCTATAAATTCTCAAATGCTATTTAA-GGGGTGTGTGTT
580 ACACTTTAATGGCTACTG-CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * **
17158951 CTCA-AGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCAATCATACATC
644 CT-AGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * *
17159015 ATGTGCACACACCCCCCGGCCCCCCGATCG-CCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGG
708 ATGTGCGCACACCCCCCGGCCCCCCGATCGTCGA-AACCCCAATGCCGTCGGTCAGGTTCTCCGG
* * * ** ** * ** *
17159079 CGTTGCTCCGGCAATGGTGCCCCGGTGAAGAAAAATGTGGCACCAATACATG-TTCGAGCCCAGC
772 CGATGCTCCAGCGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCT-GAGCCCAGC
*
17159143 ATGTGCTGCTGCAA--C-C---CTGG---G-TC-----C-----A-G---TCCG-AT-
836 ATGTGCTGCCGCAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
17159175 CTTAGACTGGGAATAAACTCCGTACGCCTAAGTCAACCAACCAAACGAGCGTGCGGGCGCTCGGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * ** * * *
17159240 CGGCCAGAGGGGTGAGATGCACAAGCCAGGGATCGGCCGGGTCCCCCTCTGCATGTTGCCGATCC
66 CGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGATC-GGTCCCCCTCTGCGTGCTGTCGATCC
* * * * * *
17159305 TGCTACCGCAACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAA
130 TGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * **
17159370 TCGACGAAACGA--GTGGGCGGGCGGGCACTACGTCGGCCAGAGAGATAGGATGCGCAAGCTGTG
195 CCGACGAAACGAGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCTGTG
* *
17159433 GATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCTAATGCCATTTTTA
260 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
* * *
17159498 TGGTTTGTAAGTTCATACCATGGTCCCTTAA-CCTTCACGTGAAGTTTCATGGCAAGACGACTCG
325 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* * * * *
17159562 TTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGTGATTTTTTAAAATTTTTTTGGATG
390 TTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAG
* * **
17159627 GACTTTTGGCCCCAAACATGGTAGA-GTGATCCTTGTATTTTTGTTGGCATGCGTAAAAAAATTC
455 GAGTTTT-GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* *
17159691 AGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAATTGT-CCCATTTTCAGACA
519 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTTCAGACA
*
17159755 CTTTAATGGCTACTGGC-GTCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGTGTTCT
583 CTTTAATGGCTACT-GCAG-CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * *
17159819 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCACACATCATG
646 AGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * * **
17159884 TGCGCACTCCCCCCCGGCCCCCCCAATCGTCGGAACCCCAATGCCATCGGTTTGGTTCTCCGACG
711 TGCGCAC-ACCCCCCGG-CCCCCCGATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCT-C--CG
* * *
17159949 ATGCTTCGAAGATGGTGCCCCGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGC
771 --G---C---GATGCT--CCAG-CGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGC
** * * * * *
17160014 CCAAGCCCAGCATGTGCTGCTGCAACCCTCGGACCT-ATCCGATCTTAGACTCGGAATAAACTCC
825 CTGAGCCCAGCATGTGCTGCCGCAACCCTC-GATCTGGTCCGATCTTAGACTGGGAATGAACTCC
*
17160078 TTATG
889 GTATG
* * * * * *
17160083 CTTATACTGGGATTGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGTGGGTGTTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * * * *
17160148 CTGCCAGAAGGGTGGGATGCACAAGCCGAGGATCGATCGGTTCCCCCACTACGTGCTATTGATCC
66 CGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGATCGG-TCCCCCTCTGCGTGCTGTCGATCC
* ** * *
17160213 TGCTGTCATAACCCTCGGTCCGGTCTGATCTTAAACTGGGAATGAACTCCGTATGCCTAAGCCAA
130 TGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
17160278 CTGACGAAACGAGCGGGCAGGCGGGCGTGCGGGCACTGCGCCGACCAGAGAGACGGGATGCGCAA
195 CCGACGAAACGA----G--GGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
17160343 G-TCGTGGATCGATAGAGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCC
254 GCT-GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* * * *
17160407 ATTTTTATGGTTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAACA
318 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * *
17160472 CGACTCGTTTTTTATTTTTCAGGATTTTCAAAACGTTTTACGGTTCGAGATTTTTTAAAATTTTT
383 CGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTT
* * * *
17160537 TTGGAAGGAGTTTTGGCCCCAAACTTAGTAGACGTGATTCTTGTATTTTT-TTGGCGTGCACAAA
448 TCGGAAGGAGTTTT-GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * * *
17160601 AAAATTCAGTTAAAAACTTGAAATATACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
512 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
17160666 CAGACACTTTAATGGCGACTGACAGCAAACCTATAAAATCTGAAATGCTCTTTAAGGGGGTGTGA
577 CAGACACTTTAATGGCTACTG-CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
17160731 GTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCATA
641 GTTCTAGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * * * *
17160796 TCATGGGCGCACACCCCCTGGCCCCCCTATCATCGGAACCCCAATGCCGTCGATCAGGTTCTCTG
706 TCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCTCCG
* * * * ** * **
17160861 ACGATGCTCCGGTGATGGTGCCCCGATGAAGAAAGTTACGATACCAGCACATGCCCAAGCCCAGC
771 GCGATGCTCCAGCGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCTGAGCCCAGC
* * * * * *
17160926 ATGTGTTGTCACAACCCTC-AGTCTGGTCTGATCTTAGACTAGGAATGAACTACGTATG
836 ATGTGCTGCCGCAACCCTCGA-TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
17160984 CTTAGACTGGGAATGTACTTCGTATGCCTAAGTCAACCCATGATACGAGCGTGCGGGTGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
17161049 CGGCCAGAGGGGC-AGGATGCGCAAGTCGAGGATCGATCGAGTCCCCCTCCGTGTGCTGTCGATC
66 CGGCCAGAGGGGCGA-GATGCGCAAGCCGGGGATCGATCG-GTCCCCCTCTGCGTGCTGTCGATC
* * * * *
17161113 CTACTGTCAG-AACCCTCAATTCGGT-TGGATCTTAGACTGGGAATGACCTCCGTATGCCTAAGC
129 CTGCTG-CCGCAACCCTCAGTCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * ** * * *
17161176 CAACCGATGAAATGAGTGGGCGGGCGGGCGGGTGCTCCGCCTGCTAGAGAGACGGGATGCGCAAG
192 CAACCGACGAAACGA--GGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * * *
17161241 CCGTGGATCGATAGGGTGGTAGGTGGGTTCATGCACATCTTCATATTTCTACATGCCAATGCCAT
255 CTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* *
17161306 TTTTATGGCTTGTAAATTCATACAATGGACCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATG
320 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * * *
17161371 ACTCGTTTTTTATTTTTCACGATTTTCAAAAATATTTGCGGTTCGGGATTTTTTAAAATTTTTTC
385 ACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTC
* * * * *
17161436 GAAAGGAGTTTTATCCCCAAACTTGGTAGACGTGATCCCT-TATTTTTGTTTGCCTGCACAAAAA
450 GGAAGGAGTTTT-GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* *
17161500 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCAATTCA
514 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
17161565 GACACTTTAATGCCTACTCGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
579 GACACTTTAATGGCTACT-GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
17161630 TCTAGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
643 TCTAGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* *
17161695 ATGTGCGCACACCCCCCCGGCTCCCTCGATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCG
708 ATGTGCGCACA-CCCCCCGGC-CCCCCGATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCTCCG
*
17161760 GCGATGCTCCAGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCTGAGCCCAGC
771 GCGATGCTCCAGCGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCTGAGCCCAGC
* * *
17161825 ATGTGCTACCACAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
836 ATGTGCTGCCGCAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * * * *
17161883 CTTAGATTGGCAATGAACTTTC-TATGCCTAAGTAAACCCACAAAACGTGCGTGCAGGCGCTCAA
1 CTTAGACTGGGAATGAAC-TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
17161947 CCGGCCAGAGGGGCGAGATGTGCAAGCCGGGGATCGGTCAGGTCCCCCTCTGTGTGCT-ACTAAT
65 CCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGATC-GGTCCCCCTCTGCGTGCTGTC-GAT
* * **
17162011 CCTGCTGCCGCAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
128 CCTGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
17162076 AACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
193 AACCGACGAAACGA--GGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
17162141 TGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
256 TGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
17162206 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
321 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * *
17162271 CTCGTTTTCTATTTTTCACGATATTCGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCG
386 CTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCG
* * *
17162336 AAAGGAGTTTTGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCATAAAAAAA
451 GAAGGAGTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * *
17162401 TTCAACTAAAAACTCGAAGTGTACACGATTTTGCGACCATTTGAAAAAAGTGTCCCCATTTCAGA
516 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
17162466 CACTTTAATGGCTACTGGCAGCAAAACTGTACAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
581 CACTTTAATGGCTACT-GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
17162531 TCGAGGTTTGATGAGGAATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
645 TAGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* *
17162596 GGGCGCA-ACCCCCCGGCCCCTCCGATCATC-AGAACCCCAATGCCG-CTGGTCAGGTTCT-C--
710 GTGCGCACACCCCCCGGCCCC-CCGATCGTCGA-AACCCCAATGCCGTC-GGTCAGGTTCTCCGG
* *
17162655 C---G----A-CGATGGTGCCCCGACGAAGAAAAA-AGCGACGCTAGCACATGCCTGAGCCCAGC
772 CGATGCTCCAGCGATGGTGCCCCGACGAAGAAAAATA-CGACACCAGCACATGCCTGAGCCCAGC
* * * *
17162711 ATGTGCTACCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCTGTATG
836 ATGTGCTGCCGCAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
17162769 CTTAGAATGGGAATGAACTCCGTATGCCTAAATCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
17162834 CGGCTAGAGGGGC-AGATGCGCAGGCTGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCC
66 CGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGATC-GGTCCCCCTCTGCGTGCTGTCGATCC
* * * * * * *
17162898 TACTGTCGTAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATAAACAT-CATATGCCTACGCCA
130 TGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAAC-TCCGTATGCCTAAGCCA
* * * * * *
17162962 ATCGACGACATGA--GCGGGCGGGCGGGCACTACTCCGGCTAGAGAGACAGGATGCGCAAGCTGT
194 ACCGACGAAACGAGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCTGT
*
17163025 GGATCGATAGGGTAGTAGGTGGGTTTAGGCACATCTTCATATTTCT
259 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
17163071 TTTCTATTTT
Statistics
Matches: 3379, Mismatches: 422, Indels: 177
0.85 0.11 0.04
Matches are distributed among these distances:
864 6 0.00
865 106 0.03
866 110 0.03
867 114 0.03
868 339 0.10
869 6 0.00
871 2 0.00
873 1 0.00
876 1 0.00
879 4 0.00
881 95 0.03
882 56 0.02
884 1 0.00
885 107 0.03
886 167 0.05
887 1 0.00
889 2 0.00
891 2 0.00
892 2 0.00
894 1 0.00
896 13 0.00
897 493 0.15
898 37 0.01
899 759 0.22
900 9 0.00
901 256 0.08
902 5 0.00
904 5 0.00
906 3 0.00
907 5 0.00
908 167 0.05
912 1 0.00
914 1 0.00
915 36 0.01
916 139 0.04
917 306 0.09
918 21 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (893 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGATCGGTCCCCCTCTGCGTGCTGTCGATCCT
GCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACGAGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCTGTGG
ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
TTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGG
AGTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
TAATGGCTACTGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGG
TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
ACACCCCCCGGCCCCCCGATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCC
AGCGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCTGAGCCCAGCATGTGCTGCC
GCAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:17162772 original size:26 final size:26
Alignment explanation
Indices: 17162743--17162795 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17162733 CTGGTCCAAT
* *
17162743 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
17162769 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
17162795 C
1 C
17162796 CTAAATCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:17163585 original size:26 final size:26
Alignment explanation
Indices: 17163556--17163605 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
17163546 CCGGTCCGAT
17163556 CTTAGACTGAAAATGAACTCCGTACG
1 CTTAGACTGAAAATGAACTCCGTACG
**
17163582 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGAAAATGAACTCCGTA
17163606 TGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.24
Consensus pattern (26 bp):
CTTAGACTGAAAATGAACTCCGTACG
Found at i:17165227 original size:26 final size:26
Alignment explanation
Indices: 17165191--17165243 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17165181 TCAGTTTGAT
17165191 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
*
17165217 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
17165243 C
1 C
17165244 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:17166122 original size:26 final size:26
Alignment explanation
Indices: 17166082--17166134 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17166072 TTGGCTCGAT
*
17166082 CTTAGACTGGAAATGGACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
* *
17166108 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
17166134 C
1 C
17166135 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:17166391 original size:891 final size:890
Alignment explanation
Indices: 17164537--17178797 Score: 9779
Period size: 888 Copynumber: 15.9 Consensus size: 890
17164527 CAGGCGGGTG
*
17164537 GGCGGGCACTACATCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
1 GGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
** * *
17164602 GTTTAGGCACATCTTCATATTTCTGTATGCCAAAGCCATTTTTATGGCTTGCAAATTCATACAAT
66 GTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
*
17164667 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGATTTT
131 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* * *
17164732 TG-AATTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGG
196 TGAAAATTTTTGCGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
** * *
17164796 TACCCATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTAC
261 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
17164861 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAAG-A
326 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC-AGCA
* **
17164925 AACCTGTAAAATCTCAAATGCTCTTTAAGGGTGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGG
390 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGG
*
17164990 GGCCAATA-ATAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCTCGGCCCCC
455 GGCCAATATA-AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTCGG-CCCC
* * * *
17165054 CCGATCGTCGGAACCCAAATGCCACCGGTCAGGCTCTCTAATGATGCTTTGACGATGGTGCCCCG
518 CCGATCGTCGGAACCCCAATGTCACCGGTCAGG-T-TC------T-C--CGATGATGGTGCCCCG
* * * * * * *
17165119 ACGAAGAAAAATGTGACACCAGCACATGCCTGTGCCCAGCATGTGCTACTGTAGCCCTCGGTTCA
572 ACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTC-GTTCA
* * * *
17165184 GTTTGATCTTAGAATGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
636 G-TCGATCTTAGACTGGGAATGGACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAG
* * * ** * *
17165249 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGTC-AGCTAGAAAGATGGGATGTGCAAGCCAGGG
700 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGA-CCAGAAGGGCGGGATGCGCAAGCCGGGG
* * * * * * *** * *
17165313 ATCGATC-GGGTCCCCCTCTGCATGCTGTCAATGCTGCTCCCACAACCCTTGGTCTGATCTAATC
764 ATCGGTCTGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTGTAACCCTCGATCTGATCTAATC
* * *
17165377 TTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAAC-AAGCGGGCGGGCGGGCA
829 TTAGACTAGGAATAAACTCCGTATGCCTAAGCCAACCGACGAAACGAA-CGGGCGGGCGAGCA
* * * *
17165439 GGCGGGCACTATGCCGACCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGG
1 GGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* *
17165504 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTGATACAAT
66 GTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
*
17165569 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG-CTTTGTTTTCTATTTTTCACGATTT
131 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC-TCGTTTTCTATTTTTCACGATTT
* * *
17165633 TTGAAAAATTTTACGGTTCAAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTG
195 TTGAAAATTTTTGCGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* * * * *
17165698 GTAGATGTGATCTTTCTATTTTTTTTGGCATGCACAAAAGAATTCAGCTAAAAACTCGAAGTGTA
260 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* *
17165763 CAAGATTTTGAGACCATTTGAATAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
325 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * *** * *
17165828 AACCTGTAAAATCTTAAAAGCTCTTTAAGGGGGTGTGAGTTCCCAAGTTTTGAAGAGGGATAGGG
390 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGG
17165893 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTCGGCCCCCC
455 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTCGGCCCCCC
* * *
17165958 GATCG-CTGGAACCCCAATGTCGCCGGTCATGTTCTCCGATGATGGTGCCCCGAAGAAGAAAAAT
520 GATCGTC-GGAACCCCAATGTCACCGGTCAGGTTCTCCGATGATGGTGCCCCGACGAAGAAAAAT
* * * **
17166022 ACGACACCAGCACATGCCTGAGCCCAGTATGTGCTGCCGCAACCCTCAGTTTGGCTCGATCTTAG
584 GCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTC-GTTCAG-TCGATCTTAG
* *
17166087 ACTGGAAATGGACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAA
647 ACTGGGAATGGACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAA
* * * *
17166152 ACGAGCGTGCGGGCGCTCAGCCGACCAGAAGGGCGAGATGCGTAAGCCGGGGTTCGGTC-GAGTC
712 ACGAGCGTGCGGGCGCTCAGCCGACCAGAAGGGCGGGATGCGCAAGCCGGGGATCGGTCTGGGTC
* * * * *
17166216 CCCCTCTACGTGCTACCGATCCTGCTGCTGTAACCCTCGATCTGATCTGATCTTAGTCTGGGAAT
777 CCCCTCTGCGTGCTGCCGATCCTGCTGCTGTAACCCTCGATCTGATCTAATCTTAGACTAGGAAT
* * *
17166281 AAACTCCGTATGCCTAAGCCAACCGACGAAATGAACGGGCGGGTGGGCA
842 AAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCGAGCA
* *
17166330 GGTGGGCACTATGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
1 GGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * *
17166395 GTTTAGGCACATCTTCATATTTTTACGTGCCAATGCCATTTTTATGGCTTTTAAATTCATACAAT
66 GTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* *
17166460 GGTCCCTTAAGCCTTCACGTGAAATTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGATTTT
131 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* * **
17166525 TGAAACTTTTTGCGGTTCTAGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGG
196 TGAAAATTTTTGCGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* * * *
17166590 TAGACGTGATCCTTTTCTTTTTGTTGG-ATGCATAAAAAAATTCAGCTAAAAACTTGAAGTGTAC
261 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * *
17166654 AAGATTTTGTGACCATTTGAAAAAAGTTTCCCCATTTAAGACACTTTAATTGCTACTGGCAGCAA
326 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * * ** * **
17166719 ACCTGTAAAATCTCAAATGCACTATGAGGGGCCGTGAGTTCTTGAGGTTTGATGGGGGATAGGAA
391 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGG
** * *
17166784 GCCAATATAAGGGCCAAGTACTGGCACCCATTGCACATCATGTGCGCACACCCCCCGGCCCTCCC
456 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTCGGCCC-CCC
* * * * * *
17166849 GATCGTCGGAACCCTAATGCCGTCTGTCAGGTTCTCCGATGATGCTCCGATGATGGTGCCCCGAT
520 GATCGTCGGAACCCCAAT---GTC--ACCGG---T-C-A-GGTTCTCCGATGATGGTGCCCCGAC
* *
17166914 GAAGAAAAATACGGCACCAGCACATGCCTGAGCCCAGCATGTGCTACCGCAA-CC-C--TC-G--
574 GAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGTTCAGTC
* *
17166972 G-TC-----C------T-G--TCCG-AT-CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
639 GATCTTAGACTGGGAATGGACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAA
* ** * * * * * *
17167020 CCCACGAAATGAGAATGCAGGCGATCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATC-G
704 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAAGGGCGGGATGCGCAAGCCGGGGATCGG
* * * * * *
17167084 ACTGGGTCCCACTCTGCGTGCTGTCGATCCTGCTG-TCGTAACCCTC-AGTTTGGTCCAATCTTA
769 TCTGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCT-GTAACCCTCGA-TCTGATCTAATCTTA
* * * *
17167147 GACTAGGAATGAACTTCGTATGCCTAAGCCAATCGATGAAACGAACGGGCGGGCGAGCA
832 GACTAGGAATAAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCGAGCA
* ** *
17167206 GGTGGGCACTACGTTTGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
1 GGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * *
17167271 GTTTAGACACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACATT
66 GTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * **
17167336 GGTCCCTTAAGCTTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATAATTTT
131 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* ** *
17167401 T-AAAACTTTTTACGGTTCTGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAAACTT
196 TGAAAA-TTTTTGCGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC-AAACTT
* * *
17167465 GGTACACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTCAAAACTCGAAGTGT
259 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* * * **
17167530 ACAAGATTTTGCGATCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGATAGC
324 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
*
17167595 AAACCTGTAAAATCTAAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGG
389 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGG
* *
17167660 GGGCCAATATAAGGGCCAAGTACCAGCACCGATCGCACATCATGTGTGCACACCCCCCGTCGGCC
454 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCC-TCGGCC
* * *
17167725 CCTCGGATCGTCGGAACCCCAAT-TCCACCGGTAAGGTTCCCCGACGATGCTCCAGCGATGGTGC
516 CC-CCGATCGTCGGAACCCCAATGT-CACCGGTCAGGTT-CTC--CGA---T-----GATGGTGC
* * * * * *
17167789 CCCGACCATGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGAATGTGCAGCCACAACCCTCGG
568 CCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTC-G
* * *
17167854 TCCAGTCTGATCTTATACTGGGAAT-GAGCTTCGTATGCTTAGACTGGGAATGAACTCCT-TATG
632 TTCAGTC-GATCTTAGACTGGGAATGGA-CTCCGTATGCTTAGACTGGGAATGAACT-CTGTATG
* * * * *
17167917 ACTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCC-AGCCAGATGGGTGGGATGTGCAAG
694 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGA-CCAGAAGGGCGGGATGCGCAAG
* * * * * *
17167981 CCGGGGATCGG-CGGGGTCCCTCTCTGCGTGCTACCGATCCTGCTGCCGTAACCCTCG-GCTCGG
758 CCGGGGATCGGTCTGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTGTAACCCTCGATCT-GA
* * * * *
17168044 TCTGATCATAGACTGGGAATAAACTCCGTATGCCTAAGCCAACTGACGAAACGAACGGGTGGGCG
822 TCTAATCTTAGACTAGGAATAAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCG
* *
17168109 AACG
887 AGCA
* *
17168113 GGCGGGCACTACGTCGGCCAGAGAGACGGGATGTGCAAGCAGTGGATCGATAGGGTGGTAGGTGG
1 GGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * * *
17168178 GTTTAGGCGCATCTTCATATTTCTACGTGCCAATGTCATTTTTTTGGCTTGTAAATTCATACAAT
66 GTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
17168243 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC-AGCTCGTTTTCTATTTTTCACGATTT
131 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA-CTCGTTTTCTATTTTTCACGATTT
* * * **
17168307 TTGAAACTTTTTGCGGTTCAGGATTTTGTAAAATTTTTTCGGAAGGAGTTTTGG-CTAAAATCTT
195 TTGAAAATTTTTGCGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA-CTT
* * *
17168371 GGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAAGAATTCAGCTAAAAACTTGAAGTGT
259 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* * *
17168436 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGGCACTTTACTGGCAACTGGCAGC
324 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
*
17168501 GAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGG
389 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGG
* * *
17168566 GGGCCAATATAAGGGCCAAGTACCAGCACCAATCGGACATCATGTGCGCACTCCCC-CGGCCCCT
454 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTCGGCCCC-
* * *
17168630 CCGATCCTCGGAACCCCAAT-TCCACCGGTCAGGTTCCCTGACGATGCTCCAGCGATGGTGCCCT
518 CCGATCGTCGGAACCCCAATGT-CACCGGTCAGGTT--CT-CCGA---T-----GATGGTGCCCC
* * * * * * * *
17168694 GACGATGAAAAATGCGGCACCAGCACGTGCCCGAGCCCAGCATGTACTGTCGCATCCCTCGGTCC
571 GACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGTTCA
* *
17168759 GATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCT-TATGACTA
636 G-T-CGATCTTAGACTGGGAATGGACTCCGTATGCTTAGACTGGGAATGAACT-CTGTATGCCTA
* * * * * * * * *
17168823 AGTCAACTCATGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCAGGATACGTAAGCTGGG
698 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAAGGGCGGGATGCGCAAGCCGGG
* * * * * * * * *
17168888 CATCGGCCT-GGTCCCCCTCTGCGTGCTGCCTATCCTGCCGCTG--A--TTCGGTTCTCCAAC-G
763 GATCGGTCTGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTGTAACCCTC-GATCT-GATCTA
** * * * ***** * * * *
17168947 ATGCTCCGACGATGG--T--GCCCCGTCGAAAAAAAATTTGGC-ACC-A-G-CAC-ATTC--CCG
826 AT-CTTAGACTA-GGAATAAACTCCGT--ATGCCTAA---GCCAACCGACGAAACGA-ACGGGCG
* *
17169001 AGCCTAGCA
883 -GGCGAGCA
** * * * * * *
17169010 TGTGCTACCGCAACCCT-CGATCCAGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAAGT
1 -G-GC--GGGC-A--CTACG-T-CGGCCAGA---GAGAC-GGG-ATG--C-GCA-A-GC---CGT
** * * ** *** * * ** * *
17169074 CAACCCATGAAATGAGCGTGCAAGCGCTCAGCCGGCCAGAAGGGCAGGATGC-GCA-A-GCCGGG
44 GGA-TC--G--AT-AGGGTGGTAG-G-T--G--GG--TTTA-GGCA-CAT-CTTCATATTTCTGC
* ** *** * ** * * * *
17169136 GATCGGTC-GGGTCCCCCTCTATGTGC-TGTCGA-TCCTGC--T-G-CCGC--AACCCTCGGTCT
92 G-T--GCCAATG-CCATTTTTATG-GCTTGTAAATTCATACAATGGTCC-CTTAAGCCT---TCA
* * * * * * ** *** * *
17169192 GGTCCAA-TCTTAGACTTGG-AA-TCAACTCCATATGCCTA--AGCCAACCGA----CGAAATAA
148 CGT-GAAGT-TT---CATGGCAAGACGACT-CGT-TTTCTATTTTTC-A-CGATTTTTGAAA-AT
**** * ** ** ** * **** * * * * ** * *
17169248 GCGGGCGG-GCGGGCACTACTCCAGCCAGA-GAGATGGGATGCGTAAGCTGTGGTTCGATAGA-G
203 TTTTGCGGTTCAAG-A-TTTTTTA---AAATTTTTTCGGAAG-G--AGTTTTGGCCCCA-A-ACT
** * * * * ***** * *
17169310 TGGTAGGTGGGTTTAGGCACATCT-TCATATTT-TT-ACATGC-CAATGCCTTTTTTATGGCTTG
258 TGGTA-G-ACG-TGA-TC-C-T-TGT-ATTTTTGTTGGCATGCACAA--AAAAATTCA--GC-TA
* * * * * * ** * *** * * * **
17169371 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA--AGTTTCATGGCAAGACGACTCGTTTTC
310 AAAACTC-GA-AGT-GT-AC--AAG-ATT-TTGTGACCA-TTTGA-AAAAAG-TGTCCCCATTTC
* * * ** ** ** * * ** * *
17169434 TATGTTTCACGATTT-TTGAAACTTTTTACAGTTCAAGATTTATTAAAATTTTTTTGGAACGAGT
364 -A-G--ACAC--TTTAATG--GCTACTGGCAG--CAA-ACCT-GTAAAA----TCTCAAATG-CT
** * ** * ** *** * **** * *
17169498 -TTTTTGGTAGACGTGA-TCCTTGTATTTTTCTTGGCATGCACAAAAAAATTCAGCAAAAAACTC
412 CTTTAAGG-GGGTGTGAGTTCTTG-A--GGT-TT-G-ATG---AGGGATAGGGGGC-CAATA-T-
** *** * * ** * * ** *
17169561 GAAGTGTACAAGATTTTATG-A-CCATTTG-AAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
464 -AAG-GGCCAAG-TACCA-GCACCCA-TCGCACATCA-TGTGCGCA---C--AC-CCCT--CGGC
* ** * ** * * * ** ** *
17169623 TACTGGCAGCAAACCTGT-AAAATCTCAATTGCCCTTTAAGGGGGTGTGAGTTGT-CGAGGTTTG
515 --C---C-CCCGATC-GTCGGAACCCCAA-TG-----TCA-CCGGTCAG-GTTCTCCGA----TG
* **** ** * * * * * ** * *
17169686 ATGAGGGATAGGGGGCCA-ATATAA-G-GGC-CAAGTACCA-ACACCAATCGCACATCATGTGC-
561 ATG-GTGCCCCGACG-AAGA-AAAATGCGGCACCAGCA-CATGC-CTGA--GCCCAGCATGTGCT
* * ** *** ** *** * * * ** *
17169745 G--GACACCCCCCGGCCCCCCCGATCGTCGGAAC-CCCAAT-GCCATCGGTCAAG-TT-CTCCGG
619 GCCG-CAACCCTC-GTTCAGTCGATC-TTAG-ACTGGGAATGGAC-TCCGT-ATGCTTAGACTGG
* * * * ***
17169804 CG-ATG--CTCCG-ACG-AT-GGTGC--CCCGACG-AA-GAAAAT----GCG---A--C-ACCA-
678 -GAATGAACTCTGTATGCCTAAGT-CAACCC-ACGAAACGAGCGTGCGGGCGCTCAGCCGACCAG
* ** * * ** * *** *
17169848 ACA---C---ATGCCCAAGCCCCGCAT--GTGCTGCCGTAACCCTC-G-GTCCTATTTGATCTTA
740 A-AGGGCGGGATGCGCAAGCCGGGGATCGGT-CTG-GGTCCCCCTCTGCGTGCT-GCCGATCCT-
* * * * ** * * *
17169903 GACTG--GGAA---T-GAACT-CTGT-ATGCTTAGACCGGGAATGAACTCCGTATTCCTAAGTCA
800 G-CTGCTGTAACCCTCGATCTGATCTAAT-CTTAGACTAGGAATAAACTCCGTATGCCTAAGCCA
* * * *
17169960 ACCCACGAAACGAACGTGCTGCCG-GCCAA
863 ACCGACGAAACGAACGGGCGGGCGAG-C-A
* *** * * ** ** *
17169989 AG-GGGCGGGATG-C-G-C--A-AGACGGGGAT-CG---GTCG-GG-TCCCCCT-CTGT-GT-GC
1 GGCGGGCACTACGTCGGCCAGAGAGAC-GGGATGCGCAAGCCGTGGAT--CGATAGGGTGGTAGG
* * ** * * ***
17170038 TGCCGATCCTGTAACCGCAACACTCAGTCTGGTCCCATTT-TAGAC-TGGCAATG-AACTCCGTA
63 TG--GGT--T-T-A--G--GCA--CA-TCT--TCATATTTCT-G-CGTGCCAATGCCA-TTTTTA
* * * ** ** ** * ** * * * * * *
17170100 TGCCTAAGCAAA--CCGACGAAATGAGCTGGCGGACGGGCGGT--CGGGCA-CTACACCAGCCAG
110 TGGCT-TGTAAATTCATAC--AATG-G-TCCCTTA--AGCCTTCACGTGAAGTTTCA--TGGCA-
* ** * * *** ** * ** ** * * **
17170160 AGA-GAC-GGGATGCGA--AAGC-CG-TGGATCGATAGGGTGGTAGGTG-GGTTTAGGCACATTT
165 AGACGACTCGTTTTCTATTTTTCACGAT-TTTTGA-A-AAT--T-TTTGCGGTTCAAG-ATTTTT
* * * * * * * *** ** *
17170218 TCATATTTCTGCAAGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT-CCCTTAAGAC
223 TAAAATTTTTTC--G-GAA-G-GA-GTTT-TGGC-CCCAAA--C-T----TGGTAGACGT--GA-
* ** ** * ** *** * ** *****
17170282 TTCACGTG-AAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTT
270 -TC-CTTGTATTTTTGTTGGCATG-C-A--CA----AAAAAATTCA-G---CTAAAAACTCGAAG
* * * ** * ** ** * *
17170346 TGGTTCGAGATTTT-TTAAAATTTTTTCGGGAGGATTTTTAGCCCCAAACTTGGTGGCCGTGATC
321 T-GTACAAGATTTTGTGACCA---TTT--GAAAAAAGTGT--CCCC--A-TT--T---C-AGA-C
* *** ** * *** *** **
17170410 -CTTGT-CTTTTTTTTGGCATGCTAAA----AAAAAT-TC--A-GCT-AAAAACTCGAAGT--GT
368 ACTT-TAATGGCTACTGGCA-GC-AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * * ** ** * * * * ** ** *
17170462 AC--AAGATTTTCTGA-CCAT---GTG--AA-AAAAGTGTCCCCA-TTTCAGACACTTTAATGGC
430 TCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAG-G-GCCAAGTACCAG-CAC--CCATCGC
* * * * * ** ***** * ** ** ***** * ****
17170517 -TA-C-TGGGAGTAAACCTGTAAAATCTCAAAT-GCTCTTTAA-GGGGGTGTGAGTTCTCAAGGT
490 ACATCATGTGCGCACACCCCTCGGCCCCCCGATCG-TC-GGAACCCCAATGTCACCGGTC-AGGT
* ** * * * * ** * * * * *
17170577 T-T--GATGAGGGATAG--GGGGCCAATATAAGGGCCAAGTACCAGCAC---CCAT-CGCACATC
552 TCTCCGATGATGG-T-GCCCCGACGAAGAAAAATG-C-GGCACCAGCACATGCC-TGAGCCCAGC
* * * ** *** ** *** ** * * *
17170633 ATGTGC-G-CACACCCCCCGGCCCCCCGATCGCCAGAAC-CCTAAT-TCCGTCGGTCA-GGTT-C
612 ATGTGCTGCCGCAACCCTCGTTCAGTCGATC-TTAG-ACTGGGAATGGAC-TCCGT-ATGCTTAG
* * * * * * *
17170692 TCCGGCG-ATG--CTCCGACGATGTGCCT-CGTCGA---A-GAAA--A--ATGC--G-G--CA--
673 ACTGG-GAATGAACT-C--TG-TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* **** * * * * *
17170738 C--CC-GTA---C---ATGC-CAGAGCCCAACAT--GTGCTGCCG-CAACCCTCAGTC-TGGT-T
733 CGACCAGAAGGGCGGGATGCGCA-AGCCGGGGATCGGT-CTG-GGTC-CCCCTCTG-CGTGCTGC
* * * * * * *
17170788 CGATCTTAGACTG--GGAA---T-GAACT--CCGT-ATGCTTAGATTGGGAATGAACTCCGTATG
793 CGATCCT-G-CTGCTGTAACCCTCGATCTGATC-TAAT-CTTAGACTAGGAATAAACTCCGTATG
** *
17170844 CCTAAGCCAACCGACGAAACGAGTGGGC-GG-GTG--
854 CCTAAGCCAACCGACGAAACGAACGGGCGGGCGAGCA
* *
17170877 GGCGGGCACTACG-CTAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTTGGTG
1 GGCGGGCACTACGTC-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
** * * * *
17170941 GGTTTACACTCATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTCGTAAATTCATACAA
65 GGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* **
17171006 TGGTCCCTTAAGCTTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATAATTT
130 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* * **
17171071 TTGAAACTTTTTGTGGTTCAAGATTTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTT
195 TTGAAAATTTTTGCGGTTCAAGA-TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
*
17171136 GGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
259 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* * * * *
17171201 ACAAGATTTCGTTACCGTTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGGAGC
324 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
*
17171266 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-G
389 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGG
* * * * *
17171330 GGGCCAATATAAGGGCAAAGTACCAGCATCCATCGCACAACATGTGCGAACACCCCCCCGGCCCC
454 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCTCGGCCCC
* ** ** * *
17171395 CCGATCGTCGGAACCCTAAT-TCTGTCGGTCAGGTTCTCCGGCGATGGTGCACCGTCGAAGAAAA
518 CCGATCGTCGGAACCCCAATGTC-ACCGGTCAGGTTCTCCGATGATGGTGCCCCGACGAAGAAAA
* * * **
17171459 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCAGTTTGGTTCGATCTT
582 ATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTC-GTTCAG-TCGATCTT
* * * * *
17171524 AGACTGGCAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAATCCATG
645 AGACTGGGAATGGACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACG
* * * * *
17171589 AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT-TGACCGGG
710 AAACGAGCGTGCGGGCGCTCAGCCGACCAGAAGGGCGGGATGCGCAAGCCGGGGATCGGTCTGGG
** * * * * * * * ** * *
17171653 TCCCCCTCTGCGTGCTGGTGAACCTACTGCCGCAACCCTTGGTCTGGTCCGATCTTACACTGGGA
775 TCCCCCTCTGCGTGCTGCCGATCCTGCTGCTGTAACCCTCGATCTGATCTAATCTTAGACTAGGA
* * * * *
17171718 ATGAACTCCGCATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCGAGCG
840 ATAAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCGAGCA
* * * * *
17171769 GGCGGGCACTATGCCGGCCAGAAAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGCTGG
1 GGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
17171834 GTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
66 GTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * * *
17171899 GGTCCCTGAAACCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTGTATTTTTCACGA-TTT
131 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* * * * * **
17171963 TAAAAACTTTTTGCGTTTCGAGATTTTTTAAAATTTTTTTGGAAGGTGTTTTGGTTCCAAACTTG
196 TGAAAA-TTTTTGCGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* * * * *
17172028 GTAGACATGATCCTTTTATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAAATCGAAGTGTA
260 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
17172093 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
325 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
** *
17172158 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGAAAGGG
390 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGG
* ** *
17172223 GGCCAATCA-AAGGGCCAAGTTCTGGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCC
455 GGCCAAT-ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCTCGG-CCC
* * * * * * *
17172287 CCCGATCGTCAGAACCCTAAGGCCGCCGATCAGGTTCTCC-AGCGATGGTGCCCCGACGAAGAAA
517 CCCGATCGTCGGAACCCCAATGTCACCGGTCAGGTTCTCCGA-TGATGGTGCCCCGACGAAGAAA
* * * * * * * * *
17172351 AATGCAGCGCCAGCACATGCCCGAGCCCAGAATGTGCTGTCGCGACCTTCAGTCCAATCTGATCT
581 AATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTC-GTTCAGTC-GATCT
* * * ** * *
17172416 TAGACTGGGAATGAATTCCGTATGGTTAGACTATGAATGAACTCCGTGTGCCTAAGTCAACCCAC
644 TAGACTGGGAATGGACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCAC
* * * * * * * *
17172481 GAAACGAGCGTGTGGGCGTTCAGCCAGA-CAGAGGGGCGGGATGCGTAAGCCGAGGAAC-GACCG
709 GAAACGAGCGTGCGGGCGCTCAGCC-GACCAGAAGGGCGGGATGCGCAAGCCGGGGATCGGTCTG
* * * * * * * *
17172544 GGTCCCCCTCTGCATGCTACCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGG
773 GGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTGTAACCCTCGATCTGATCTAATCTTAGACTAG
* * * * *
17172609 GAATGAACTCCATATGCCTAAGCCAACCGACGAAAC-TA---GCGGGCAAGCG
838 GAATAAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCGAGCA
* *
17172658 GGCGTGCATTACG-CTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
1 GGCGGGCACTACGTC-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* **
17172722 GGTTTAGGCACATCTTCATATTTCTGCATGCCAACACCATTTTTATGGCTTGTAAATTCATACAA
65 GGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
*
17172787 TGGTCACTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
130 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* * * * * * *
17172852 TTGAAACTTTCTACTGTTCAGGATTTTTTAAAATTTTTTTGGAAGGAATTTTGGCCCCAAACTTG
195 TTGAAAATTTTTGCGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* *
17172917 GTAGACATGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTA
260 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* *
17172982 CAAGATTTTGTGACCATTCGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACA
325 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
** *
17173047 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCCAGGTTTGATGAGGGATAGGA
390 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGG
* *
17173112 GGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCGG-CCCCC
455 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTCGGCCCCCC
* * ** * * *
17173176 TATCGTCGGAACCCTAATCCCGCTGGTCAGGTTCTCCGGCGATGCTCTAGCGATGGTG-CCCGGC
520 GATCGTCGGAACCCCAATGTCACCGGTCAGGTTCT-C--CGA-----T---GATGGTGCCCCGAC
* * * * * **
17173240 GAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCACCATGTGCTGCCACAACCCTTGGTTTGGT
574 GAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCC-TCGTTCAGT
* * *** *
17173305 CCGATCCTAGACTGGGAATGAACTCCGTATGCTTAGACTCAAAATGAACTCCGTATGCCTAAGTC
638 -CGATCTTAGACTGGGAATGGACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTC
* ** * * * * *
17173370 AACCCATGAAAC-ATGCGTGCCAGAGCTCAACCGGCCAGAGGGGCGGGATGCACAAGCCGGGGAT
702 AACCCACGAAACGA-GCGTGCGGGCGCTCAGCCGACCAGAAGGGCGGGATGCGCAAGCCGGGGAT
* ** * * * *** * *
17173434 CAG-CCCGGTCCCCCTCTGTGTGCTACCCATCCTGCTGCCACAACCCT-TAGTC-CAGTCTAATC
766 CGGTCTGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTGTAACCCTCGA-TCTGA-TCTAATC
* * * * * * * * * * * *
17173496 TTAGACTGGGAATGACCTCCGTACGCCGAAGCCAACTGACGAAATGAGCGCGTGGGCGGGCG
829 TTAGACTAGGAATAAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCGAGCA
* * * ** * *
17173558 GGCGGGCACTACGCCGACAAGAGAGACAAGACGCGCAAGCCGTGGATCGATAGGGTGGTAAGTGG
1 GGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* *
17173623 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATGCAAT
66 GTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * *
17173688 GGTCGCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAAGACTCGTTTTCTATTTTTCACGATTTT
131 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* * * * *
17173753 TGAAACTTTCTGCGGTTCAAGATTTTTTAAAATTTTTTTGGAAGGAATTTTGGCCCCAAATTTGG
196 TGAAAATTTTTGCGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* * *
17173818 TAGACGTGATCCTTGTATTTTTTTTGGGATGCACAAAAAAATTCAGCTAAAAACCCGAAGTGTAC
261 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * *
17173883 AAGATTTTGTGACCATTTGAAAAAAGTGTACTCATTTCGGACACTTTAATGGCTACTGGCAGCAA
326 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* *** *
17173948 ACCTGTGAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCCCAAGGTTTAATGAGGGATAGGGG
391 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGG
* * * *
17174013 GCCAATATGAGGGCCAAGTACTAGCACCCATCGCACATTATGTGCACACACCCC-CTGGCACCCC
456 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTC-GGC-CCCC
* * ** *
17174077 AGATCGTCGGAACCCCAATGTCACCGGTCAAGTTCTCCGGCGATGGTGCCCCGACGAACAAAAAT
519 CGATCGTCGGAACCCCAATGTCACCGGTCAGGTTCTCCGATGATGGTGCCCCGACGAAGAAAAAT
* * * * *
17174142 GCGGCACCAGCACATGCAC-GAGCCCAGCATGTGCTGCCGTAACCCTCGATCTGGTCCAATTTTA
584 GCGGCACCAGCACATGC-CTGAGCCCAGCATGTGCTGCCGCAACCCTCGTTC-AGT-CGATCTTA
* * *
17174206 AACTGGGAATGAACTACGTATGCTTAGACTGGGAATGAACT-TCGTATGCCTAAGTCAACCCACG
646 GACTGGGAATGGACTCCGTATGCTTAGACTGGGAATGAACTCT-GTATGCCTAAGTCAACCCACG
* * * * * * * *
17174270 AAACAAGCGTACGGGCGTTCAGCCAGA-CAGAGGGGCAGGATGCGCAAGCCGAGGATC-GACCGG
710 AAACGAGCGTGCGGGCGCTCAGCC-GACCAGAAGGGCGGGATGCGCAAGCCGGGGATCGGTCTGG
* * *** * * * *
17174333 GTCCCCCTTTGCGTGCTGCCAATCCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGG
774 GTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTGTAACCCTCGATCTGATCTAATCTTAGACTAGG
* * * * *
17174398 AATGAACTCCATATGCCTAAGCCAACCGACGAAAC-TA---GCGGGCAAGCG
839 AATAAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCGAGCA
* *
17174446 GGCGTGCATTACG-CTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
1 GGCGGGCACTACGTC-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* *
17174510 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATGCAA
65 GGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* *
17174575 TGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTT
130 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* * * * *
17174640 TTTAAACTTTCTGCGGTTCAAGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTG
195 TTGAAAATTTTTGCGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* * * *
17174705 GTAGACGTGATCCTTGTTTTTTTTTTGGGATGCACAAAAAAATTCAGCTAAAAAACCCGAAGTGT
260 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT-AAAAACTCGAAGTGT
* * **
17174770 ACAAGATTTTGTGACCATTTGAAAAAAGTGTACTCATTTTGGACACTTTAATGGCTACTGGCAGC
324 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* * *** *
17174835 AAACCTGTGAAATCTCAAATGCTCTTTAAGGGGTTGTGAGTTCCCAAGGTTTAATGAGGGATAGG
389 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGG
* * * *
17174900 GGGCCAATATGAGGGCCAAGTACTAGCACCCATCGCACATTATGTGCACACACCCC-CTGGCACC
454 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTC-GGC-CC
* * ** *
17174964 CCAGATCGTCGGAACCCCAATGTCACCGGTCAAGTTCTCCGGCGATGGTGCCCCGACGAACAAAA
517 CCCGATCGTCGGAACCCCAATGTCACCGGTCAGGTTCTCCGATGATGGTGCCCCGACGAAGAAAA
* * * * *
17175029 ATGCGGCACCAGCACATGCAC-GAGCCCAGCATGTGCTGCCGTAACCCTCGATCTGGTCCAATTT
582 ATGCGGCACCAGCACATGC-CTGAGCCCAGCATGTGCTGCCGCAACCCTCGTTC-AGT-CGATCT
* * *
17175093 TAAACTGGGAATGAACTACGTATGCTTAGACTGGGAATGAACT-TCGTATGCCTAAGTCAACCCA
644 TAGACTGGGAATGGACTCCGTATGCTTAGACTGGGAATGAACTCT-GTATGCCTAAGTCAACCCA
* * * * * * * *
17175157 CGAAACAAGCGTACGGGCGTTCAGCCAGA-CAGAGGGGCAGGATGCGCAAGCCGAGGATC-GACC
708 CGAAACGAGCGTGCGGGCGCTCAGCC-GACCAGAAGGGCGGGATGCGCAAGCCGGGGATCGGTCT
* * *** * * * *
17175220 GGGTCCCCCTTTGCGTGCTGCCAATCCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTG
772 GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTGTAACCCTCGATCTGATCTAATCTTAGACTA
* * * * * *
17175285 GGAATGAACTCCATATGCCTAAGCCAACTGACGAAACTAGCAGGCGGGC--G--
837 GGAATAAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCGAGCA
* *
17175335 GGCGTGCATTACG-CTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
1 GGCGGGCACTACGTC-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* *
17175399 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATGCAA
65 GGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* *
17175464 TGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTT
130 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* * * * *
17175529 TTTAAACTTTCTGCGGTTCAAGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTG
195 TTGAAAATTTTTGCGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* *
17175594 GTAGACGTGATCCTTGTATTTTTGTTGGGATGCACAAAAAAATTCAGCTAAAAACCCGAAGTGTA
260 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* * *
17175659 CAAGATTTTGTGACCATTTGAAAAAAGTGTACTCATTTCGGACACTTTAATGGCTACTGGCAGCA
325 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* *** *
17175724 AACCTGTGAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCCCAAGGTTTAATGAGGGATAGGG
390 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGG
* * *
17175789 GGCCAATATGAGGGCCAAGTACCAGCACCCATCGCACATTATGTGCACACACCCC-CTGGCACCC
455 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTC-GGC-CCC
* * * * ** *
17175853 CAGATCGTCGGAACCCCAATGTCGCCGGTCAAGTTCTTCGGCGATGGTGCCCCGACGAACAAAAA
518 CCGATCGTCGGAACCCCAATGTCACCGGTCAGGTTCTCCGATGATGGTGCCCCGACGAAGAAAAA
* * * *
17175918 TGCAGCACCAGCACATGCAC-GAGCCCAGCATGTGCTGCCGTAACCCTCGATCTGGTCCGATCTT
583 TGCGGCACCAGCACATGC-CTGAGCCCAGCATGTGCTGCCGCAACCCTCGTTC-AGT-CGATCTT
* * * *
17175982 AAACTGGGAATGAACTACGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
645 AGACTGGGAATGGACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACG
* * * ** * * *
17176047 AAACAAGCGTGCGGGCGTTCAGCCAGA-CAGAGGGGTAGGATGCGCAAGTCGAGGATCGATC-GG
710 AAACGAGCGTGCGGGCGCTCAGCC-GACCAGAAGGGCGGGATGCGCAAGCCGGGGATCGGTCTGG
* *** * * * *
17176110 GTCCCCCTCTGCGTGCTGCCGATCTTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGG
774 GTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTGTAACCCTCGATCTGATCTAATCTTAGACTAGG
* * * * * *
17176175 AATGAACTCCATATGCCTAAGCCAACTGACGAAACTAGCAGGCGGGC--G--
839 AATAAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCGAGCA
* * *
17176223 GGCGTGCATTACG-CTGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
1 GGCGGGCACTACGTC-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* *
17176287 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATGCAA
65 GGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * *
17176352 TGGTCGCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAAGACTCGTTTTCTATTTTTCACGATTT
130 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* * * * *
17176417 TTGAAACTTTCTGCGGTTCAAGATTTTTTAAAATTTTTTTGGAAGGAATTTTGGCCCCAAATTTG
195 TTGAAAATTTTTGCGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* * *
17176482 GTAGACGTGATCCTTGTATTTTTTTTGGGATGCACAAAAAAATTCAGCTAAAAACCCGAAGTGTA
260 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* *
17176547 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTCGGACACTTTAATGGCTACTGGCAGCA
325 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* *** *
17176612 AACCTGTGAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCCCAAGGTTTAATGAGGGATAGGG
390 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGG
* * * * *
17176677 GGCCAACATGAGGGCCAAGTACCAGCACCCATCGCACATTATGTGCACACACCCC-CTGGCACGC
455 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTC-GGC-CCC
* * * * * *
17176741 CAGATCGCCGGAACCCCAATGTCGCCGGTCAAGTTCTCCGGTGATGGTGCCCCGACGAACAAAAA
518 CCGATCGTCGGAACCCCAATGTCACCGGTCAGGTTCTCCGATGATGGTGCCCCGACGAAGAAAAA
* * * * * * *
17176806 TGTGGCACCAGCACATGCAC-GAGCCCAGCATGTGCGGCTGTAACCCTTGATCTGGTCCGATCTT
583 TGCGGCACCAGCACATGC-CTGAGCCCAGCATGTGCTGCCGCAACCCTCGTTC-AGT-CGATCTT
* * * * *
17176870 AAACTGGGAATGAACTACGCATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
645 AGACTGGGAATGGACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACG
* * * * * * * *
17176935 AAACAAACGTGCGGGCGTTCAGCCAGA-CAGAGGGGCGAGATGCGTAAGCCGAGGATCGATC-GG
710 AAACGAGCGTGCGGGCGCTCAGCC-GACCAGAAGGGCGGGATGCGCAAGCCGGGGATCGGTCTGG
* * *** * * * *
17176998 GTCCCCCTCTGCATGCTGCCGATCCTACTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGG
774 GTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTGTAACCCTCGATCTGATCTAATCTTAGACTAGG
* ** * * * **
17177063 AATGAACTCTATATGACTAAGCCAACCGACGAAACTAGCGGGC---CG-GTG
839 AATAAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCGAGCA
* * *
17177111 GGCGTGCATTACG-CTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTATGTG
1 GGCGGGCACTACGTC-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* *
17177175 GGTTTAGGCAAATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
65 GGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
*
17177240 TGTTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
130 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* * * * * * ** * *
17177305 TTGAAACTTTCTACGATTCAGGATTTTTTAAAATTTTTTTGGAAGGCTTTTTAGACCCAAACTTG
195 TTGAAAATTTTTGCGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
17177370 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
260 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
** * *
17177435 CAAGATTTTGTGACCATTCAAAAAAAGTGTCCCCATTTCAGGCACTTTAATAGCTACTGGCAGCA
325 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
** * *
17177500 AACCTGTAAAATCTCAAATATTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGA
390 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGG
* * * *
17177565 GGCCAATATAAGGGCAAAGTACCAGCACCCGTCGCACATCATGTGCGCACACCCCCCGG-CCCCT
455 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTCGGCCCCCC
* * * ** * * * *
17177629 TATCGTTGGAACCCTAATCCCGCTGGCCAGGTTCTCCGGCGATGCTCTAGCGATGGTG-CCCGGC
520 GATCGTCGGAACCCCAATGTCACCGGTCAGGTTCT-C--CGA-----T---GATGGTGCCCCGAC
* * * * * *
17177693 GAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCACCATGTGCTGCCTCAACCCTCGATCTGGT
574 GAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGTTC-AGT
* *** *
17177758 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTCAAAATGAACTCCGTATGCCTAAGTC
638 -CGATCTTAGACTGGGAATGGACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTC
* * * * * *
17177823 AACCCACGAAAC-ATGCGTGCGAGAGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGAGGAT
702 AACCCACGAAACGA-GCGTGCGGGCGCTCAGCCGACCAGAAGGGCGGGATGCGCAAGCCGGGGAT
* * * * ***
17177887 CAG-CCGGGTCCCCCTCTGCGTGCTACCCATCCTGCTGCCACAACCCTC-AGTCTTG-TCTAATC
766 CGGTCTGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTGTAACCCTCGA-TC-TGATCTAATC
* * * * * * * ** * * *
17177949 TTAGACTGGGAATGACCTCCGTACGCCGAAGCCAACCGACAAAATGAGTGCGTGGGCGGGCA
829 TTAGACTAGGAATAAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCGAGCA
* * *
17178011 GGCAGGCACTAC-TCCGGCAAGAGAGACGGGACGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
1 GGCGGGCACTACGT-CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* *
17178075 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATATAA
65 GGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
17178140 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
130 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* * * *
17178205 TTGAAACTTTCTGCGGTTCAAGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTG
195 TTGAAAATTTTTGCGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* * * * *
17178270 GTAGACGTGATCCTTGTATTTTTTTTGGGATGCAAAAAAAAATTCAGCTAAATACCCGAAGTGTA
260 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* *
17178335 CAAGATTTTGTGACCATTTGAAAAAAATGTCCTCATTTCAGACACTTTAATGGCTACTGGCAGCA
325 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * *
17178400 AACCTGTAAAATCTC-AATGCTCTGTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGA
390 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGG
17178464 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CTGG-CCCC
455 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTC-GGCCCCC
* * * ** * *
17178527 CTATTGTCGGAACCCTAATCCCGCCGGTCAGGTTCTCCGACGATGCTCTAGCGATGGTGCCCCGG
519 CGATCGTCGGAACCCCAATGTCACCGGTCAGGTTCT-C--CGA-----T---GATGGTGCCCCGA
* * * * * * *
17178592 TGAAGAAAAATGCAGCACCAGCACATG-CTCGAGCCCACCATGTGCTGCCACAACCTTCGGTCTG
573 CGAAGAAAAATGCGGCACCAGCACATGCCT-GAGCCCAGCATGTGCTGCCGCAACCCTCGTTC-A
* *** *
17178656 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTCAAAATGAACTCCGTATGCCTAAG
636 GT-CGATCTTAGACTGGGAATGGACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAG
* * * *
17178721 TCAACCCATGAAAC-ATGCGTGC-GACAGCTCAGCCGACCAGAGGGGCGGGATGCACAAGCCGGG
700 TCAACCCACGAAACGA-GCGTGCGGGC-GCTCAGCCGACCAGAAGGGCGGGATGCGCAAGCCGGG
17178784 GATCGGTC-GGGTCC
763 GATCGGTCTGGGTCC
17178798 AGAGGGGCGG
Statistics
Matches: 11022, Mismatches: 1682, Indels: 1312
0.79 0.12 0.09
Matches are distributed among these distances:
834 3 0.00
835 4 0.00
836 11 0.00
838 5 0.00
839 2 0.00
840 1 0.00
841 1 0.00
842 5 0.00
843 6 0.00
845 7 0.00
847 13 0.00
848 2 0.00
849 7 0.00
850 3 0.00
851 14 0.00
852 31 0.00
853 26 0.00
854 3 0.00
855 14 0.00
856 18 0.00
858 15 0.00
859 20 0.00
860 14 0.00
861 1 0.00
862 4 0.00
863 8 0.00
864 12 0.00
865 1 0.00
866 2 0.00
867 7 0.00
868 2 0.00
869 1 0.00
870 3 0.00
871 4 0.00
872 3 0.00
873 4 0.00
874 4 0.00
875 11 0.00
876 416 0.04
877 37 0.00
878 197 0.02
879 2 0.00
880 7 0.00
881 95 0.01
882 36 0.00
883 32 0.00
884 8 0.00
885 12 0.00
886 90 0.01
887 14 0.00
888 2245 0.20
889 1353 0.12
890 212 0.02
891 802 0.07
892 498 0.05
893 469 0.04
894 40 0.00
895 22 0.00
896 525 0.05
897 36 0.00
898 15 0.00
899 187 0.02
900 1070 0.10
901 24 0.00
902 580 0.05
903 298 0.03
904 11 0.00
905 11 0.00
906 235 0.02
907 399 0.04
908 10 0.00
909 6 0.00
910 7 0.00
911 3 0.00
913 2 0.00
914 1 0.00
915 2 0.00
918 7 0.00
919 3 0.00
921 1 0.00
923 3 0.00
924 14 0.00
925 7 0.00
926 3 0.00
927 3 0.00
928 3 0.00
929 7 0.00
930 4 0.00
931 2 0.00
932 17 0.00
933 14 0.00
934 16 0.00
935 23 0.00
936 19 0.00
937 5 0.00
938 1 0.00
939 9 0.00
940 8 0.00
941 8 0.00
942 7 0.00
943 13 0.00
944 10 0.00
945 12 0.00
946 14 0.00
947 13 0.00
948 11 0.00
949 14 0.00
950 12 0.00
951 11 0.00
952 5 0.00
953 2 0.00
954 7 0.00
955 6 0.00
956 12 0.00
957 12 0.00
958 18 0.00
959 3 0.00
960 6 0.00
961 12 0.00
962 10 0.00
963 11 0.00
964 16 0.00
965 11 0.00
966 2 0.00
967 5 0.00
968 4 0.00
969 7 0.00
970 1 0.00
972 1 0.00
973 17 0.00
974 14 0.00
975 9 0.00
976 7 0.00
977 16 0.00
978 28 0.00
979 14 0.00
980 3 0.00
981 1 0.00
982 5 0.00
983 4 0.00
984 4 0.00
985 1 0.00
986 3 0.00
987 11 0.00
988 11 0.00
989 1 0.00
990 2 0.00
991 1 0.00
993 1 0.00
994 4 0.00
995 4 0.00
996 4 0.00
997 5 0.00
998 3 0.00
999 3 0.00
1001 18 0.00
1002 39 0.00
1003 16 0.00
1004 13 0.00
1006 3 0.00
1007 1 0.00
1008 2 0.00
1009 5 0.00
1010 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (890 bp):
GGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
GTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
TGAAAATTTTTGCGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGG
GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTCGGCCCCCCG
ATCGTCGGAACCCCAATGTCACCGGTCAGGTTCTCCGATGATGGTGCCCCGACGAAGAAAAATGC
GGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGTTCAGTCGATCTTAGACTG
GGAATGGACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGA
GCGTGCGGGCGCTCAGCCGACCAGAAGGGCGGGATGCGCAAGCCGGGGATCGGTCTGGGTCCCCC
TCTGCGTGCTGCCGATCCTGCTGCTGTAACCCTCGATCTGATCTAATCTTAGACTAGGAATAAAC
TCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCGAGCA
Found at i:17167916 original size:26 final size:26
Alignment explanation
Indices: 17167865--17167916 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
17167855 CCAGTCTGAT
* * *
17167865 CTTATACTGGGAATGAGCTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17167891 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17167917 ACTAAGTCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17168796 original size:26 final size:26
Alignment explanation
Indices: 17168767--17168818 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
17168757 CCGATCCGAT
17168767 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17168793 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17168819 ACTAAGTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17169936 original size:26 final size:26
Alignment explanation
Indices: 17169899--17169949 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17169889 CCTATTTGAT
* *
17169899 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACCGGGAATGAACTCCGTATG
17169925 CTTAGACCGGGAATGAACTCCGTAT
1 CTTAGACCGGGAATGAACTCCGTAT
17169950 TCCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACCGGGAATGAACTCCGTATG
Found at i:17170828 original size:26 final size:26
Alignment explanation
Indices: 17170792--17170844 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17170782 CTGGTTCGAT
17170792 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17170818 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17170844 C
1 C
17170845 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17171561 original size:26 final size:26
Alignment explanation
Indices: 17171521--17171573 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17171511 TTGGTTCGAT
17171521 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
*
17171547 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
17171573 C
1 C
17171574 CTAAGTCAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:17171768 original size:12 final size:12
Alignment explanation
Indices: 17171751--17171775 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
17171741 ACCGACAAAA
17171751 CGAGCGGGCGGG
1 CGAGCGGGCGGG
17171763 CGAGCGGGCGGG
1 CGAGCGGGCGGG
17171775 C
1 C
17171776 ACTATGCCGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.28, G:0.64, T:0.00
Consensus pattern (12 bp):
CGAGCGGGCGGG
Found at i:17174712 original size:888 final size:887
Alignment explanation
Indices: 17170818--17178797 Score: 11450
Period size: 888 Copynumber: 8.9 Consensus size: 887
17170808 ACTCCGTATG
* * * * * *
17170818 CTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGCGGGTGGGCGGG
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACTAGCGGGCGGGCGGGCGTG
* * * *
17170883 CACTACGCTAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTTGGTGGGTTTAC
66 CATTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * * *
17170948 ACTCATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTCGTAAATTCATACAATGGTCCC
131 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* **
17171013 TTAAGCTTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATAATTTTTGAAAC
196 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * *** *
17171078 TTTTTGTGGTTCAAGATTTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGAC
261 TTTCTGCGGTTCAAGA-TTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGAC
* *
17171143 GTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
325 GTGATCCTTGTATTTTTTTTGGGATGCACAAAAAAATTCAGCTAAAAACCCGAAGTGTACAAGAT
* * * * ** *
17171208 TTCGTTACCGTTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGGAGCAAACCTG
390 TTTGTGACCATTTGAAAAAAGTGTCCTCATTTCGGACACTTTAATGGCTACTGGCAGCAAACCTG
* *
17171273 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGCCAA
455 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCCCAAGGTTTGATGAGGGATAGGGGGCCAA
* * * * *
17171337 TATAAGGGCAAAGTACCAGCATCCATCGCACAACATGTGCGA-ACACCCCCCCGGCCCCCCGATC
520 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC-ACACA-CCCCCTGGCCCCCAGATC
* * * *
17171401 GTCGGAACCCTAAT-TCTGTCGGTCAGGTTCTCCGGCGATGGTGCACCGTCGAAGAAAAATGCGG
583 GTCGGAACCCTAATGTC-GCCGGTCAGGTTCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAG
* * * *
17171465 CACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTC-AGTTTGGTTCGATCTTAGACT
647 CACCAGCACATGCACGAGCCCAGCATGTGCTGCCGTAACCCTCGA-TCTGGTCCGATCTTAGACT
* * * *
17171529 GGCAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAATCCATGAAACG
711 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACA
* * * * *
17171594 AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATTGACCGGGTCCCCC
776 AGCGTGCGGGCGTTCAGCCAGACAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCC
** * * * *
17171659 TCTGCGTGCTGGTGAA-CCTACTGCCGCAACCCTTGGTCTGGTCCGAT
841 TCTGCGTGCT-GCCAATCCTGCTGCCACAACCCTCGGTCTGGTCTGAT
* ** * *
17171706 CTTACACTGGGAATGAACTCCGCATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCGAGCGGG
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACTAGCGGGC--G-G-GCGGG
* * * * * * *
17171771 CGGGCACTATGCCGGCCAGAAAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGCTGGGT
62 CGTGCATTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
*
17171836 TTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
127 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * * **
17171901 TCCCTGAAACCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTGTATTTTTCACGATTTTAA
192 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * * **
17171966 AAACTTTTTGCGTTTCGAGATTTTTTAAAATTTTTTTGGAAGG-TGTTTTGGTTCCAAACTTGGT
257 AAACTTTCTGCGGTTCAAGATTTTTTAAAATTTTTTTGGAAGGAT-TTTTGGCCCCAAACTTGGT
* * * * **
17172030 AGACATGATCCTTTTATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAAATCGAAGTGTACA
321 AGACGTGATCCTTGTATTTTTTTTGGGATGCACAAAAAAATTCAGCTAAAAACCCGAAGTGTACA
* *
17172095 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
386 AGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTCGGACACTTTAATGGCTACTGGCAGCAAA
* *
17172160 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGAAAGGGGG
451 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCCCAAGGTTTGATGAGGGATAGGGGG
* ** * *
17172225 CCAATCA-AAGGGCCAAGTTCTGGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCC
516 CCAAT-ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACA-CCCCCTGG-CCCCC
* * * * * *
17172289 CGATCGTCAGAACCCTAAGGCCGCCGATCAGGTTCTCCAGCGATGGTGCCCCGACGAAGAAAAAT
578 AGATCGTCGGAACCCTAATGTCGCCGGTCAGGTTCTCCGGCGATGGTGCCCCGACGAAGAAAAAT
* * * * ** * *** *
17172354 GCAGCGCCAGCACATGCCCGAGCCCAGAATGTGCTGTCGCGACCTTC-AGTCCAATCTGATCTTA
643 GCAGCACCAGCACATGCACGAGCCCAGCATGTGCTGCCGTAACCCTCGA-TCTGGTCCGATCTTA
* * ** *
17172418 GACTGGGAATGAATTCCGTATGGTTAGACTATGAATGAACTCCGTGTGCCTAAGTCAACCCACGA
707 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * * *
17172483 AACGAGCGTGTGGGCGTTCAGCCAGACAGAGGGGCGGGATGCGTAAGCCGAGGAACGACCGGGTC
772 AACAAGCGTGCGGGCGTTCAGCCAGACAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTC
* * * *
17172548 CCCCTCTGCATGCTACCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGAT
837 CCCCTCTGCGTGCTGCCAATCCTGCTGCCACAACCCTCGGTCTGGTCTGAT
**
17172599 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACTAGCGGGCAAGCGGGCGTG
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACTAGCGGGCGGGCGGGCGTG
17172664 CATTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
66 CATTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
** *
17172729 GCACATCTTCATATTTCTGCATGCCAACACCATTTTTATGGCTTGTAAATTCATACAATGGTCAC
131 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
17172794 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
196 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * * * *
17172859 TTTCTACTGTTCAGGATTTTTTAAAATTTTTTTGGAAGGAATTTTGGCCCCAAACTTGGTAGACA
261 TTTCTGCGGTTCAAGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGACG
* * * *
17172924 TGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
326 TGATCCTTGTATTTTTTTTGGGATGCACAAAAAAATTCAGCTAAAAACCCGAAGTGTACAAGATT
* * * *
17172989 TTGTGACCATTCGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAACCTGT
391 TTGTGACCATTTGAAAAAAGTGTCCTCATTTCGGACACTTTAATGGCTACTGGCAGCAAACCTGT
*
17173054 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCC-AGGTTTGATGAGGGATAGGAGGCCAA
456 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC-CCAAGGTTTGATGAGGGATAGGGGGCCAA
* * * *
17173118 TATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCGGCCCCC-TATCGT
520 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCTGGCCCCCAGATCGT
** * * *
17173182 CGGAACCCTAATCCCGCTGGTCAGGTTCTCCGGCGATGCTCTAGCGATGGTGCCCGGCGAAGAAA
585 CGGAACCCTAATGTCGCCGGTCAGGTTCTCCGGCGA-----T-G-G-T-G-CCCCGACGAAGAAA
* * ** * * * *
17173247 AATGCAGCACCAGCACATGCCCGAGCCCACCATGTGCTGCCACAACCCTTGGTTTGGTCCGATCC
640 AATGCAGCACCAGCACATGCACGAGCCCAGCATGTGCTGCCGTAACCCTCGATCTGGTCCGATCT
*** *
17173312 TAGACTGGGAATGAACTCCGTATGCTTAGACTCAAAATGAACTCCGTATGCCTAAGTCAACCCAT
705 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* ** * * * * * * * *
17173377 GAAACATGCGTGCCAGAGCTCAACCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATC-AGCCCG
770 GAAACAAGCGTGCGGGCGTTCAGCCAGACAGAGGGGCGGGATGCGCAAGCCGAGGATCGA-CCGG
* * * ** ** *
17173441 GTCCCCCTCTGTGTGCTACCCATCCTGCTGCCACAACCCTTAGTCCAGTCTAAT
834 GTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCACAACCCTCGGTCTGGTCTGAT
* * * * *
17173495 CTTAGACTGGGAATGACCTCCGTACGCCGAAGCCAACTGACGAAA-TGAGCGCGTGGGCGGGCGG
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACT-A--GC--GGGCGGGCGG
* * * * * ** * *
17173559 GCGGGCACTACGCCGACAAGAGAGACAAGACGCGCAAGCCGTGGATCGATAGGGTGGTAAGTGGG
61 GCGTGCATTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
*
17173624 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATGCAATG
126 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * *
17173689 GTCGCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAAGACTCGTTTTCTATTTTTCACGATTTTT
191 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* *
17173754 GAAACTTTCTGCGGTTCAAGATTTTTTAAAATTTTTTTGGAAGGAATTTTGGCCCCAAATTTGGT
256 GAAACTTTCTGCGGTTCAAGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGT
17173819 AGACGTGATCCTTGTATTTTTTTTGGGATGCACAAAAAAATTCAGCTAAAAACCCGAAGTGTACA
321 AGACGTGATCCTTGTATTTTTTTTGGGATGCACAAAAAAATTCAGCTAAAAACCCGAAGTGTACA
*
17173884 AGATTTTGTGACCATTTGAAAAAAGTGTACTCATTTCGGACACTTTAATGGCTACTGGCAGCAAA
386 AGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTCGGACACTTTAATGGCTACTGGCAGCAAA
* *
17173949 CCTGTGAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCCCAAGGTTTAATGAGGGATAGGGGG
451 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCCCAAGGTTTGATGAGGGATAGGGGG
* * *
17174014 CCAATATGAGGGCCAAGTACTAGCACCCATCGCACATTATGTGCACACACCCCCTGGCACCCCAG
516 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCTGGC-CCCCAG
* * * *
17174079 ATCGTCGGAACCCCAATGTCACCGGTCAAGTTCTCCGGCGATGGTGCCCCGACGAACAAAAATGC
580 ATCGTCGGAACCCTAATGTCGCCGGTCAGGTTCTCCGGCGATGGTGCCCCGACGAAGAAAAATGC
* * * *
17174144 GGCACCAGCACATGCACGAGCCCAGCATGTGCTGCCGTAACCCTCGATCTGGTCCAATTTTAAAC
645 AGCACCAGCACATGCACGAGCCCAGCATGTGCTGCCGTAACCCTCGATCTGGTCCGATCTTAGAC
* *
17174209 TGGGAATGAACTACGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAAC
710 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* *
17174274 AAGCGTACGGGCGTTCAGCCAGACAGAGGGGCAGGATGCGCAAGCCGAGGATCGACCGGGTCCCC
775 AAGCGTGCGGGCGTTCAGCCAGACAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCC
*
17174339 CTTTGCGTGCTGCCAATCCTGCTGCCACAACCCTCGGTCTGGTCTGAT
840 CTCTGCGTGCTGCCAATCCTGCTGCCACAACCCTCGGTCTGGTCTGAT
**
17174387 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACTAGCGGGCAAGCGGGCGTG
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACTAGCGGGCGGGCGGGCGTG
17174452 CATTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
66 CATTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
*
17174517 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATGCAATGGTCCC
131 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * *
17174582 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTTAAAC
196 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
17174647 TTTCTGCGGTTCAAGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGACG
261 TTTCTGCGGTTCAAGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGACG
*
17174712 TGATCCTTGTTTTTTTTTTGGGATGCACAAAAAAATTCAGCTAAAAAACCCGAAGTGTACAAGAT
326 TGATCCTTGTATTTTTTTTGGGATGCACAAAAAAATTCAGCT-AAAAACCCGAAGTGTACAAGAT
* *
17174777 TTTGTGACCATTTGAAAAAAGTGTACTCATTTTGGACACTTTAATGGCTACTGGCAGCAAACCTG
390 TTTGTGACCATTTGAAAAAAGTGTCCTCATTTCGGACACTTTAATGGCTACTGGCAGCAAACCTG
* * *
17174842 TGAAATCTCAAATGCTCTTTAAGGGGTTGTGAGTTCCCAAGGTTTAATGAGGGATAGGGGGCCAA
455 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCCCAAGGTTTGATGAGGGATAGGGGGCCAA
* * *
17174907 TATGAGGGCCAAGTACTAGCACCCATCGCACATTATGTGCACACACCCCCTGGCACCCCAGATCG
520 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCTGGC-CCCCAGATCG
* * * * *
17174972 TCGGAACCCCAATGTCACCGGTCAAGTTCTCCGGCGATGGTGCCCCGACGAACAAAAATGCGGCA
584 TCGGAACCCTAATGTCGCCGGTCAGGTTCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCA
* * *
17175037 CCAGCACATGCACGAGCCCAGCATGTGCTGCCGTAACCCTCGATCTGGTCCAATTTTAAACTGGG
649 CCAGCACATGCACGAGCCCAGCATGTGCTGCCGTAACCCTCGATCTGGTCCGATCTTAGACTGGG
* *
17175102 AATGAACTACGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACAAGC
714 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGC
* * *
17175167 GTACGGGCGTTCAGCCAGACAGAGGGGCAGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTTT
779 GTGCGGGCGTTCAGCCAGACAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCT
17175232 GCGTGCTGCCAATCCTGCTGCCACAACCCTCGGTCTGGTCTGAT
844 GCGTGCTGCCAATCCTGCTGCCACAACCCTCGGTCTGGTCTGAT
* *
17175276 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACTGACGAAACTAGCAGGCGGGCGGGCGTG
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACTAGCGGGCGGGCGGGCGTG
17175341 CATTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
66 CATTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
*
17175406 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATGCAATGGTCCC
131 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * *
17175471 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTTAAAC
196 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
17175536 TTTCTGCGGTTCAAGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGACG
261 TTTCTGCGGTTCAAGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGACG
*
17175601 TGATCCTTGTATTTTTGTTGGGATGCACAAAAAAATTCAGCTAAAAACCCGAAGTGTACAAGATT
326 TGATCCTTGTATTTTTTTTGGGATGCACAAAAAAATTCAGCTAAAAACCCGAAGTGTACAAGATT
*
17175666 TTGTGACCATTTGAAAAAAGTGTACTCATTTCGGACACTTTAATGGCTACTGGCAGCAAACCTGT
391 TTGTGACCATTTGAAAAAAGTGTCCTCATTTCGGACACTTTAATGGCTACTGGCAGCAAACCTGT
* *
17175731 GAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCCCAAGGTTTAATGAGGGATAGGGGGCCAAT
456 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCCCAAGGTTTGATGAGGGATAGGGGGCCAAT
* *
17175796 ATGAGGGCCAAGTACCAGCACCCATCGCACATTATGTGCACACACCCCCTGGCACCCCAGATCGT
521 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCTGGC-CCCCAGATCGT
* * * *
17175861 CGGAACCCCAATGTCGCCGGTCAAGTTCTTCGGCGATGGTGCCCCGACGAACAAAAATGCAGCAC
585 CGGAACCCTAATGTCGCCGGTCAGGTTCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCAC
*
17175926 CAGCACATGCACGAGCCCAGCATGTGCTGCCGTAACCCTCGATCTGGTCCGATCTTAAACTGGGA
650 CAGCACATGCACGAGCCCAGCATGTGCTGCCGTAACCCTCGATCTGGTCCGATCTTAGACTGGGA
*
17175991 ATGAACTACGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCG
715 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCG
** * *
17176056 TGCGGGCGTTCAGCCAGACAGAGGGGTAGGATGCGCAAGTCGAGGATCGATCGGGTCCCCCTCTG
780 TGCGGGCGTTCAGCCAGACAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTG
* *
17176121 CGTGCTGCCGATCTTGCTGCCACAACCCTCGGTCTGGTCTGAT
845 CGTGCTGCCAATCCTGCTGCCACAACCCTCGGTCTGGTCTGAT
* *
17176164 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACTGACGAAACTAGCAGGCGGGCGGGCGTG
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACTAGCGGGCGGGCGGGCGTG
*
17176229 CATTACGCTGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
66 CATTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* *
17176294 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATGCAATGGTCGC
131 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* *
17176359 TTAAGCCTTCATGTGAAGTTTCATGGCAAGAAGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
196 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* *
17176424 TTTCTGCGGTTCAAGATTTTTTAAAATTTTTTTGGAAGGAATTTTGGCCCCAAATTTGGTAGACG
261 TTTCTGCGGTTCAAGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGACG
17176489 TGATCCTTGTATTTTTTTTGGGATGCACAAAAAAATTCAGCTAAAAACCCGAAGTGTACAAGATT
326 TGATCCTTGTATTTTTTTTGGGATGCACAAAAAAATTCAGCTAAAAACCCGAAGTGTACAAGATT
17176554 TTGTGACCATTTGAAAAAAGTGTCCTCATTTCGGACACTTTAATGGCTACTGGCAGCAAACCTGT
391 TTGTGACCATTTGAAAAAAGTGTCCTCATTTCGGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * *
17176619 GAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCCCAAGGTTTAATGAGGGATAGGGGGCCAAC
456 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCCCAAGGTTTGATGAGGGATAGGGGGCCAAT
* * * *
17176684 ATGAGGGCCAAGTACCAGCACCCATCGCACATTATGTGCACACACCCCCTGGCACGCCAGATCGC
521 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCTGGC-CCCCAGATCGT
* * * * **
17176749 CGGAACCCCAATGTCGCCGGTCAAGTTCTCCGGTGATGGTGCCCCGACGAACAAAAATGTGGCAC
585 CGGAACCCTAATGTCGCCGGTCAGGTTCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCAC
* * * *
17176814 CAGCACATGCACGAGCCCAGCATGTGCGGCTGTAACCCTTGATCTGGTCCGATCTTAAACTGGGA
650 CAGCACATGCACGAGCCCAGCATGTGCTGCCGTAACCCTCGATCTGGTCCGATCTTAGACTGGGA
* * *
17176879 ATGAACTACGCATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAACG
715 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCG
* * *
17176944 TGCGGGCGTTCAGCCAGACAGAGGGGCGAGATGCGTAAGCCGAGGATCGATCGGGTCCCCCTCTG
780 TGCGGGCGTTCAGCCAGACAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTG
* * *
17177009 CATGCTGCCGATCCTACTGCCACAACCCTCGGTCTGGTCTGAT
845 CGTGCTGCCAATCCTGCTGCCACAACCCTCGGTCTGGTCTGAT
* * * *
17177052 CTTAGACTGGGAATGAACTCTATATGACTAAGCCAACCGACGAAACTAGCGGGCCGGTGGGCGTG
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACTAGCGGGCGGGCGGGCGTG
*
17177117 CATTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTATGTGGGTTTAG
66 CATTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* *
17177182 GCAAATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGTTCCC
131 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
17177247 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
196 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * * * * *
17177312 TTTCTACGATTCAGGATTTTTTAAAATTTTTTTGGAAGGCTTTTTAGACCCAAACTTGGTAGACG
261 TTTCTGCGGTTCAAGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGACG
* * *
17177377 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
326 TGATCCTTGTATTTTTTTTGGGATGCACAAAAAAATTCAGCTAAAAACCCGAAGTGTACAAGATT
** * *
17177442 TTGTGACCATTCAAAAAAAGTGTCCCCATTTCAGG-CACTTTAATAGCTACTGGCAGCAAACCTG
391 TTGTGACCATTTGAAAAAAGTGTCCTCATTTC-GGACACTTTAATGGCTACTGGCAGCAAACCTG
** * * *
17177506 TAAAATCTCAAATATTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGAGGCCAA
455 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCCCAAGGTTTGATGAGGGATAGGGGGCCAA
* * * * **
17177571 TATAAGGGCAAAGTACCAGCACCCGTCGCACATCATGTGCGCACACCCCCCGG-CCCCTTATCGT
520 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCTGGCCCCCAGATCGT
* ** * * * *
17177635 TGGAACCCTAATCCCGCTGGCCAGGTTCTCCGGCGATGCTCTAGCGATGGTGCCCGGCGAAGAAA
585 CGGAACCCTAATGTCGCCGGTCAGGTTCTCCGGCGA-----T-G-G-T-G-CCCCGACGAAGAAA
* *
17177700 AATGCAGCACCAGCACATGCCCGAGCCCACCATGTGCTGCC-TCAACCCTCGATCTGGTCCGATC
640 AATGCAGCACCAGCACATGCACGAGCCCAGCATGTGCTGCCGT-AACCCTCGATCTGGTCCGATC
***
17177764 TTAGACTGGGAATGAACTCCGTATGCTTAGACTCAAAATGAACTCCGTATGCCTAAGTCAACCCA
704 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * * * *
17177829 CGAAACATGCGTGCGAGAGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGAGGATC-AGCCG
769 CGAAACAAGCGTGCGGGCGTTCAGCCAGACAGAGGGGCGGGATGCGCAAGCCGAGGATCGA-CCG
* * * * *
17177893 GGTCCCCCTCTGCGTGCTACCCATCCTGCTGCCACAACCCTCAGTCTTGTCTAAT
833 GGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCACAACCCTCGGTCTGGTCTGAT
* * * * * *
17177948 CTTAGACTGGGAATGACCTCCGTACGCCGAAGCCAACCGAC-AAAATGAGTGCGTGGGCGGGCAG
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACT-A--GC--GGGCGGGCGG
* * * * *
17178012 GCAG-GCACTACTCCGGCAAGAGAGACGGGACGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
61 GC-GTGCATTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
*
17178076 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATATAAT
125 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
17178141 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
190 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
17178206 TGAAACTTTCTGCGGTTCAAGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGG
255 TGAAACTTTCTGCGGTTCAAGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGG
* *
17178271 TAGACGTGATCCTTGTATTTTTTTTGGGATGCAAAAAAAAATTCAGCTAAATACCCGAAGTGTAC
320 TAGACGTGATCCTTGTATTTTTTTTGGGATGCACAAAAAAATTCAGCTAAAAACCCGAAGTGTAC
* *
17178336 AAGATTTTGTGACCATTTGAAAAAAATGTCCTCATTTCAGACACTTTAATGGCTACTGGCAGCAA
385 AAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTCGGACACTTTAATGGCTACTGGCAGCAA
* * * *
17178401 ACCTGTAAAATCTC-AATGCTCTGTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGAG
450 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCCCAAGGTTTGATGAGGGATAGGGG
* *
17178465 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGGCCCCC-T
515 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCTGGCCCCCAG
* ** **
17178529 ATTGTCGGAACCCTAATCCCGCCGGTCAGGTTCTCCGACGATGCTCTAGCGATGGTGCCCCGGTG
580 ATCGTCGGAACCCTAATGTCGCCGGTCAGGTTCT-C--C---G-----GCGATGGTGCCCCGACG
* * ** * *
17178594 AAGAAAAATGCAGCACCAGCACATGCTCGAGCCCACCATGTGCTGCCACAACCTTCGGTCTGGTC
634 AAGAAAAATGCAGCACCAGCACATGCACGAGCCCAGCATGTGCTGCCGTAACCCTCGATCTGGTC
***
17178659 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTCAAAATGAACTCCGTATGCCTAAGTCA
699 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * * *
17178724 ACCCATGAAACATGCGTGC-GACAGCTCAGCC-GACCAGAGGGGCGGGATGCACAAGCCGGGGAT
764 ACCCACGAAACAAGCGTGCGGGC-GTTCAGCCAGA-CAGAGGGGCGGGATGCGCAAGCCGAGGAT
**
17178787 CGGTCGGGTCC
827 CGACCGGGTCC
17178798 AGAGGGGCGG
Statistics
Matches: 6497, Mismatches: 522, Indels: 134
0.91 0.07 0.02
Matches are distributed among these distances:
886 70 0.01
887 5 0.00
888 2247 0.35
889 1346 0.21
890 4 0.00
891 219 0.03
892 507 0.08
893 320 0.05
894 4 0.00
895 11 0.00
896 513 0.08
897 1 0.00
898 4 0.00
899 137 0.02
900 1058 0.16
901 6 0.00
902 37 0.01
903 1 0.00
904 1 0.00
905 2 0.00
910 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (887 bp):
CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACTAGCGGGCGGGCGGGCGTG
CATTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
TTTCTGCGGTTCAAGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGACG
TGATCCTTGTATTTTTTTTGGGATGCACAAAAAAATTCAGCTAAAAACCCGAAGTGTACAAGATT
TTGTGACCATTTGAAAAAAGTGTCCTCATTTCGGACACTTTAATGGCTACTGGCAGCAAACCTGT
AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCCCAAGGTTTGATGAGGGATAGGGGGCCAAT
ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCTGGCCCCCAGATCGTC
GGAACCCTAATGTCGCCGGTCAGGTTCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACC
AGCACATGCACGAGCCCAGCATGTGCTGCCGTAACCCTCGATCTGGTCCGATCTTAGACTGGGAA
TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGT
GCGGGCGTTCAGCCAGACAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTGC
GTGCTGCCAATCCTGCTGCCACAACCCTCGGTCTGGTCTGAT
Found at i:17176015 original size:26 final size:26
Alignment explanation
Indices: 17175979--17176031 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17175969 CTGGTCCGAT
17175979 CTTAAACTGGGAATGAACTACGTATG
1 CTTAAACTGGGAATGAACTACGTATG
* *
17176005 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTACGTATG
17176031 C
1 C
17176032 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTACGTATG
Found at i:17179983 original size:26 final size:26
Alignment explanation
Indices: 17179954--17180006 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17179944 CCGGCCCCAT
17179954 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17179980 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17180006 C
1 C
17180007 CTAAGTTAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17180783 original size:898 final size:898
Alignment explanation
Indices: 17179172--17183519 Score: 5208
Period size: 898 Copynumber: 4.9 Consensus size: 898
17179162 CCGATCACCA
* * * * * * * **
17179172 GGATCGGTTGGGTCCCCCTCTGCGTGCTACTGATCCTACTACCGTAACCCTCGGTTCGGTCTGAT
1 GGATCGGTCGGGTCCCCCTTTGCGTGCTGCTGATCCTGCTACCGTAACCTTCAGTCCGGTCCAAT
* * *
17179237 CTTAGACTAGGAATGAACTCCATATGCCTAAGACAACCGACGAAACGAGCGGGCAGACGGGC-AG
66 CTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGC--G--GACGGGCGA-
* * * ** **
17179301 GCGGGCACTACATCGGCTAGAGAGATGGGATGCGTAAGCCGTGGATCGATAATGTGGTAGGTGGG
125 GCGGGCACTACGTCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* *
17179366 TTTAGGCACATCTTCA-TATTCTGCGTGCCAATGCCATTTTTATGGCCTGTAAATTCATACAATG
190 TTTAGGCACATCTTCATTTTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * *
17179430 GTCCCTTAAGCCTTCACGTGGAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGATTTTT
255 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC-TCTTTTCTATTTTTCATGATTTTT
*
17179495 GAAACTTTTTGCAGTTCGAGATTTTTT-AAATTTTTTCGGAAGGAATTTTGGCCCCAAACTTGGT
319 GAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAATTTTGGCCCCAAACTTGGT
** * * *
17179559 AGATGTGATCCTTGTATTTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAATCGAAGTGTAC
384 AGACATGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTAC
* * * *
17179624 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTTAGACACTTTCATGGCTACTGGTAGCAA
448 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* *
17179689 ACCTGTAAAATCTAAAATGCTCTTT-AAGAGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGG
513 ACCTGTAAAATCTCAAATGCTCTTTAAAG-GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * **
17179753 GGCCAATATAAGGGCCAACTACCAGCACCCATCGCACATCATAAGCGCACACCCCCCTCGG-CCC
577 GGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCC-CGGCCCC
** * ** *
17179817 CCCGATCACCGGAACCCTAATGCCGTCGATCAGGTTCTCCAACGATGCTCCGATGATGGTGCCCT
641 CCCGATCGTCGGAACCCTAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCT
* * * *
17179882 GACGAAGAAAAATGCGG-ACCAGCACTTGCCTGAGCCCAGCATGTG-TGGTCGCAACCCTCGGTC
706 GACGAAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGCATGTGCT-GTCGCAACCCTCGGTC
* * *
17179945 CGGCCCCATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
770 CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCAGTATGCCTA
* ** ** * * * * *
17180010 AGTTAACCCATGAAACGAGCGCGCGGACGCTCAGTC-GGCTAGAGGGGCGGGATTG-C-AGGTCA
835 AGTCAACCCACAAAACGAGCATGCGGGCGCTCAG-CAGGCCAGAGGGGCGAGATTGCCAAGCT-G
17180072 G
898 G
* ** * * *
17180073 GGATCGGTCGGGTCCCCCTTTGCTTGCTGCAAATCCTACTGCCGCAACCTTCAGTCCGGTCCAAT
1 GGATCGGTCGGGTCCCCCTTTGCGTGCTGCTGATCCTGCTACCGTAACCTTCAGTCCGGTCCAAT
17180138 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGACGGGCGAGCGGG
66 CTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGACGGGCGAGCGGG
* *
17180203 CACTACGCCGGCCAGAGAGACGGGATGCACAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAG
130 CACTACGTCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
*
17180268 GCACATCTTCATTTTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
195 GCACATCTTCATTTTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * * *
17180333 TTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACGCGTTTTCTATTTTTCATGATTTTTAAAAA
260 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC-TTTTCTATTTTTCATGATTTTTGAAAC
** * ** **
17180398 TTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGGAAATAATTTTGGCCCCAAACTTGGTAGATG
324 TTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAATTTTGGCCCCAAACTTGGTAGACA
* * *
17180463 TGATCCTTGTATTTTTTTTGGCATTCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
389 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATT
* * *
17180528 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGCTACGGGCAGCAAACCAGT
454 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * * *
17180593 GAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCAAGGTTTGA-CATTGGATAGGGGGCCAA
519 AAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGA-GGGATAGGGGGCCAA
* *
17180657 TATAAGGGCCAAGTAGCAGCACCCATTGCACATCATGTGCGCACACCTCCCCGGCCCCCCCGATC
583 TATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATC
*
17180722 GTCGGAACCCTAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCTGACGAAG
648 GTCGGAACCCTAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCTGACGAAG
* * * * * * * * **
17180787 AAAAATTTGGCACCAACACAT-CCCGAGCCCAGCATGTGCTGCCGTAGCCGTTGGTCTGATCTTA
713 AAAAATGTGGCACCAACACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGA
* *
17180851 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGAAATGAACTCAGTATGCCTAAGTCAACC
778 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCAGTATGCCTAAGTCAACC
* * *
17180916 CGCAAAATGAGCATGCGGGCGTTCAGCAGGCCAGAGGGGCGAGATTGCCAAGCTGG
843 CACAAAACGAGCATGCGGGCGCTCAGCAGGCCAGAGGGGCGAGATTGCCAAGCTGG
* * *
17180972 GGATCGGTCGGGT-CCCCTTTAGCGTGCTGCTGATCCTGCTACCATAACCCTT-AGTCTGGCCCA
1 GGATCGGTCGGGTCCCCCTTT-GCGTGCTGCTGATCCTGCTACCGTAA-CCTTCAGTCCGGTCCA
* * *
17181035 ATCTTAGACCTGGATTGAACTCCGTATGCCTAAACCAA-TCGAC-AAA--A-C-GA---GCGGGC
64 ATCTTAGA-CTGGAATGAACTCCGTATGCCTAAGCCAACT-GACGAAACGAGCGGACGGGCGAGC
* * *
17181091 GGGCACTACTTCGGCCAGAGAGACAGGATGCACAGGCCGTGGATCGATAGGGTGGTAGGTGGGTT
127 GGGCACTACGTCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * ** *
17181156 TAGGCACATCTTGATATTTCTATGTGCCAATGCCATTGTTATGGCTTGTAAATTCATACAATGGT
192 TAGGCACATCTTCATTTTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
*
17181221 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTCTTATTTTTCATGATTTTTGA
257 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCTTTTC-TATTTTTCATGATTTTTGA
* * * * * * * *
17181286 AACTATTTGCGGCTCGAGAATTTTTACAATTTTTTTGCAAGGAGTTTT-GTCCCAAACTTGGTAG
321 AACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAATTTTGGCCCCAAACTTGGTAG
*
17181350 ACATGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAG
386 ACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAG
17181415 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
451 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
17181480 TGTAAAATCTCAAATGCTCTTT-AAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
516 TGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
*
17181544 AATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACA-CCTCCCGGCCCCCCCGA
581 AATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGA
*
17181608 TCGTCGGAACCCTAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCTGACGA
646 TCGTCGGAACCCTAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCTGACGA
* * *
17181673 AGAAAAATTTGGCACCAACACAT-CTCGAGCCCAGCATGTGC--T-G------TC-GT--AG-CC
711 AGAAAAATGTGGCACCAACACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCC
* *
17181724 G---TTGGTCT--G-AT---CT---TAT-CTTAGACTGGGAATGAACTCAGTATGCCTAAGTCAA
776 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCAGTATGCCTAAGTCAA
* * *
17181776 CCCGCAAAATGAGCATGCGGGCGTTCAGCAGGCCAGAGGGGCGAGATTGCCAAGCTGG
841 CCCACAAAACGAGCATGCGGGCGCTCAGCAGGCCAGAGGGGCGAGATTGCCAAGCTGG
* * ** *
17181834 GGATCGGTCGGGTCCCCCTTAGCGTGCTGCTGATCCTGCTACCATAACCCTT-AGTTTGGCCCAA
1 GGATCGGTCGGGTCCCCCTTTGCGTGCTGCTGATCCTGCTACCGTAA-CCTTCAGTCCGGTCCAA
* * *
17181898 TCTTAGACCTGGATTGAACTCCGTATGCCTAAACCAA-TCGAC-AAA--A-C-GA---GCGGGCG
65 TCTTAGA-CTGGAATGAACTCCGTATGCCTAAGCCAACT-GACGAAACGAGCGGACGGGCGAGCG
* * *
17181954 GGCACTACTTCGGCCAGAGAGAACAGGATGCATCAGGCCGTGGACTCGGAATAGGGTGGTAAGGT
128 GGCACTACGTCGGCCAGAGAG-ACGGGATGCA-CAAGCCGTGGA-TC-G-ATAGGGTGGT-AGGT
* ** *
17182019 GGG-TTAGGGCACATCTT--GTTTTCTATGTGCCAATGCCATTGTTATGGCTTGTAAATTCATAA
187 GGGTTTA-GGCACATCTTCATTTTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT-A
* *
17182081 CAATGCGTACCCTTAAGCCTGCA-GTGAAGTTTCATGGCAAGAACGACTCATTTCTATTTTTTCA
250 CAATG-GT-CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG-ACGACTCTTTTCTA-TTTTTCA
* * * * * * *
17182145 TGATTTTTGAAACTATTTGCGGCTCGAGAATTTTTACAATTTTTTTGGAAGG-AGTTTGGTCCCA
311 TGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAATTTTGGCCCCA
*
17182209 AACTTGG-AGACATGCATCCTGGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTG
376 AACTTGGTAGACATG-ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTG
17182273 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-CCCATTTCAGACACTTTAATGG-TACT
440 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
*
17182336 GGCAGCAAACCTGT-AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGCGTTTGATGAG
505 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAG-GTTTGATGAG
**
17182400 GGATAGGGGGCCAATATAAGGGCC-AGTACCAGCACCCACCGC-CACTCATGTGCGCACACCCCC
569 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACA-TCATGTGCGCACA---CC
* * *** * * * *
17182463 CCTCCCGGCCCACGCCGATCGTCGGAACCCCAATGCTACCGGTCAAGTTCTCGGGTGATGCTTCG
630 CC-CCCGGCCC-CCCCGATCGTCGGAACCCTAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCG
* ** *
17182528 ATGATGGTG-CCTCGGTGAAGAAAAATGTGGCACC-ACACATGCCCAAGCCCAGCATGTGCTGTC
693 ACGATGGTGCCCT-GACGAAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGCATGTGCTGTC
* * *
17182591 GCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAA
757 GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * * * *
17182656 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCAGGCCAGACGGGCGGGA
822 CTCAGTATGCCTAAGTCAACCCACAAAACGAGCATGCGGGCGCTCAGCAGGCCAGAGGGGCGAGA
* *
17182721 -TGCGCAAGCCGA
887 TTGC-CAAGCTGG
* * * * * * * * * * **
17182733 GGATTGGTCAGGTCCCCATCTGTGTGCTACTGATCCTGCTGCCGCAACCCTCAGTCCGATCTGAT
1 GGATCGGTCGGGTCCCCCTTTGCGTGCTGCTGATCCTGCTACCGTAACCTTCAGTCCGGTCCAAT
** * * *
17182798 CTTAGACTACAAATGAACTCCGTATGCCTCAGCCAACCGACGAAACGAGCGGGCGGGCGAG-GAG
66 CTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGACGGGCGAGCG-G
* * * * *
17182862 GCACTACGCCGGTCAGAGAGACGTGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTA
129 GCACTACGTCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* ** ** *
17182927 GGCACATCTTAAAATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAGTGGTCC
194 GGCACATCTTCATTTTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* *
17182992 CTTAAGCCTTCACGTGAAGTTTCGTGGGAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAA
259 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC-TTTTCTATTTTTCATGATTTTTGAAA
* * * * *
17183057 CCTTTTGCGGTTGGGGATTTTTTTAAAATTTTTTCGGAAGGAGTCTTGGCCTCC-AACTTGGTAG
323 CTTTTTGCGGTTCGAGA-TTTTTTAAAATTTTTTCGGAAGGAATTTTGGCC-CCAAACTTGGTAG
17183121 ACATGATCCTTGTA-TTTTGTTGGCATGCAC-AAAAAATTCAGCT-AAAACTTGAAGTGT-CAAG
386 ACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAG
*
17183182 ATTTTGTGACCATTTG-AAAAAGTGT-CCCATTTCATACACTTTAATGGCTACTGGCAGCAAACC
451 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* * *
17183245 TATAAAATCTCAAGTGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTTGATGA-GGATA-GGGGC
516 TGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGG-TTTGATGAGGGATAGGGGGC
* * *
17183308 CAATATAAGGG-CAAGTACCAGCA-CCA-T-CGCA-CA--T-------CCCCCCCGGCACCCCTG
580 CAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCCGGCCCCCCCG
** * * * ** * *
17183359 ATCACCGGAACCCCAACGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGACA
645 ATCGTCGGAACCCTAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCTGACG
* * * * * * * *
17183424 AACAAGAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTTGGTTCAGTT
710 AAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTC
* *
17183489 CGATCTTAAATTGGGAATGAACTCCGTATGC
775 CGATCTTAGACTGGGAATGAACTCCGTATGC
17183520 CTAAGCCAAC
Statistics
Matches: 3049, Mismatches: 299, Indels: 219
0.85 0.08 0.06
Matches are distributed among these distances:
862 224 0.07
863 19 0.01
864 11 0.00
865 2 0.00
866 64 0.02
867 85 0.03
868 105 0.03
869 182 0.06
870 1 0.00
871 2 0.00
872 22 0.01
873 85 0.03
875 2 0.00
876 1 0.00
878 2 0.00
879 66 0.02
880 76 0.02
881 4 0.00
882 2 0.00
883 2 0.00
885 2 0.00
886 2 0.00
888 120 0.04
889 88 0.03
890 163 0.05
891 217 0.07
892 2 0.00
893 2 0.00
894 3 0.00
895 5 0.00
896 5 0.00
897 140 0.05
898 602 0.20
899 358 0.12
900 76 0.02
901 175 0.06
902 39 0.01
903 50 0.02
904 3 0.00
905 10 0.00
906 8 0.00
907 22 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
GGATCGGTCGGGTCCCCCTTTGCGTGCTGCTGATCCTGCTACCGTAACCTTCAGTCCGGTCCAAT
CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGACGGGCGAGCGGGC
ACTACGTCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
CACATCTTCATTTTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCTTTTCTATTTTTCATGATTTTTGAAACTT
TTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAATTTTGGCCCCAAACTTGGTAGACATG
ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTT
GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
AATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
AAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTC
GGAACCCTAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCTGACGAAGAAA
AATGTGGCACCAACACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCT
TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCAGTATGCCTAAGTCAACCCAC
AAAACGAGCATGCGGGCGCTCAGCAGGCCAGAGGGGCGAGATTGCCAAGCTGG
Found at i:17180892 original size:26 final size:26
Alignment explanation
Indices: 17180852--17180904 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17180842 CTGATCTTAT
* * *
17180852 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGAAATGAACTCAGTATG
17180878 CTTAGACTAGAAATGAACTCAGTATG
1 CTTAGACTAGAAATGAACTCAGTATG
17180904 C
1 C
17180905 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGAAATGAACTCAGTATG
Found at i:17182649 original size:26 final size:26
Alignment explanation
Indices: 17182613--17182665 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17182603 CTGGTCTGAT
17182613 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17182639 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17182665 C
1 C
17182666 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17184246 original size:26 final size:26
Alignment explanation
Indices: 17184210--17184262 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17184200 TCGATACGAT
17184210 CTTAGACTGGGAATGAACTCAGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
*
17184236 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
17184262 C
1 C
17184263 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATG
Found at i:17185148 original size:26 final size:26
Alignment explanation
Indices: 17185112--17185161 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
17185102 ATCCGATCTA
*
17185112 AGACTGGGAATGAACTTCGTATGCTT
1 AGACTGGGAATGAACTCCGTATGCTT
17185138 AGACTGGGAATGAACTCCGTATGC
1 AGACTGGGAATGAACTCCGTATGC
17185162 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTT
Found at i:17185731 original size:891 final size:895
Alignment explanation
Indices: 17183491--17187556 Score: 5249
Period size: 892 Copynumber: 4.5 Consensus size: 895
17183481 GTTCAGTTCG
* * * * *
17183491 ATCTTAAATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACCAAACGAGCGGGCGTGCGGGCG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC---AG-GCAGGC-
* *
17183556 GGTGGGCACTATG-TCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTG
61 ---GGGCACTACGCT-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * * *
17183620 GGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA-TTTTAGAGGCTTGTAAATTCATGCA
122 GGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTA-TGGCTTGTAAATTCATACA
* *
17183684 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTGTATTTTTCATGATT
186 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * *
17183749 TTTGAAACTTTGTACGGTTCGGGAGTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
251 TTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
17183814 GGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
316 GGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* *
17183879 ACAAGATTTTGTGACCATTTGAAAAAAGTGT-CACATTTCAGACACTTTAATGGCTATTGGCAGC
381 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* * * *
17183943 ATACCTGTAAAATCTCAAATGCGCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGACGAAAGATAGG
446 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAAGGATAGG
* * *
17184008 GGGCCAATATAAGGGCCAAGTTCAAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCG
511 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCACGTGCGCACACCCCCCGGCCCC-
* * *
17184073 CCGATC-TCTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGAGGATGATCCAGTGATGGTGCCCC
575 CCGATCGTCTGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCAGTGATGGTGCCCC
* * * ** **
17184137 GACGAAGAATAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCTGCAACCCTCGGTTC
640 GACGAAGAAAAATGAGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGCCC
* * *
17184202 GATACGATCTTAGACTGGGAATGAACTCAGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
705 AATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * * * * *
17184267 GTCAACCCATAAAACGAGTGTCCGAGCGCTCAACCGGCCAGAGGGGCGAGATGCGCAAGCTAGGG
770 GTCAACCCATGAAACGAGCGTGCGGGTGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCAAGG
* * * * * * *
17184332 ATC-GACTGGGTCCCCCTCTGCGTGCTGCTGATCCTGCTGCCACAACTCTCAGTTCAGTCCG
835 ATCGGTC-GGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCACAACCCTCAGTCCAGTCCA
* *
17184393 ATCTTAGATTGGGAATGAACTCCGTATACCTAAGCCAACCGACGAAACGAGGGGCGGGATGGCAG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA---GC---A-GGCAG
* * * * *
17184458 GCGGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGTTAGGGCGGCAGGTGGG
59 GCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* ** * *
17184523 TTTAGGTACATCTTCATATTTCTTCACACCAATGCAATTTTTATGGCTTGTAAATTGATACAATG
124 TTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
*
17184588 ATCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
189 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * *
17184653 AAAACTTTTTGCGGTTCT-GGATTTCTTAAAATTTTTTCGGAAGGAGTTCTGGCCCCAAACTTGG
254 GAAACTTTTTACGGTT-TGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
*
17184717 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
318 TAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* *
17184782 AAGATTTTGTGACCATTTGAAAAAAGTGT-CACATTTCAGACACTTTAATTGCTACTGGCAGCAA
383 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
17184846 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAAGGATAGGGG
448 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAAGGATAGGGG
* *
17184911 GACAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC-CTACACCCCCCGGCCCCCC
513 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCACGTGCGC-ACACCCCCCGGCCCCCC
* * * * * *
17184975 AATTGTC-GGAACCCCAATGCCGCCGGTCAGGTTTTTCGATGATGCT-CACGTGATGGTACCCCG
577 GATCGTCTGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCA-GTGATGGTGCCCCG
** * * *
17185038 GTGAATAAAAATGAGGCACCAGCACTTGCCCGAGCCCAGCATGTGCTGCCACAA-CCTCGACCCA
641 ACGAAGAAAAATGAGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGCCCA
* *
17185102 ATCCGATCTAAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
706 ATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * ** * ***
17185167 TCAACTCATGAAACGAGCGTGCGGGGGCTCAGCCGGTAAGAGGGGCGGGATGCGCAAACTGGGGA
771 TCAACCCATGAAACGAGCGTGCGGGTGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCAAGGA
* * * * * *
17185232 TCAGTCGGGTCCCCCTTTACGTGCTGCTGATCCTGCTGCCGCAACCCTCAGTCCAGTCTA
836 TCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCACAACCCTCAGTCCAGTCCA
* *
17185292 ATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAACGAGCAGGCAGGCGGGCA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCAGGCGGGCA
*
17185357 CTACGCTGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGT
66 CTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGT
* * * * *
17185422 ACATCTTCATATTTCAGCGTGCCAAAGCAATTTTTGTGGCTTGTAAATTCATACAATGGTCCCTT
131 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * * **
17185487 CAG-CTTCACGTGAAGTTTCATGGCAAGGCGACTCGTTTTCTATTTTTCATGATTTTCAAAACTT
196 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTT
* * *
17185551 TTTACGGTTTGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAAATTAGTAGACGTG
261 TTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
*
17185616 ATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTAAGCTAAAAACTCGAAGTGTACAA-ATTTT
326 ATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
*
17185680 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACATGTAA
391 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* * * *
17185745 AATATCAAATGCTCTTTAAGGGGGTGTGAGTT-TTGAAGGTTTGATGAGGGATA-GGTGCCAATA
456 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG-AGGTTTGATGAAGGATAGGGGGCCAATA
*
17185808 TAAGGGCCAAGTACCAGCAACCATCGCACATCACGTGCGCACACCCCCCGGCCCCCCCGATCG-C
520 TAAGGGCCAAGTACCAGCACCCATCGCACATCACGTGCGCACACCCCCCGG-CCCCCCGATCGTC
* * * * * *
17185872 TGGAACGCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCAGCGATGGTGCCTCGATGAAGAA
584 TGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCAGTGATGGTGCCCCGACGAAGAA
* * * * * * *
17185937 AAATGCGGCAGCAGCACATGCTCGAGCTCGGCATGTGCTGCCACAACTCTCGGCCCAGTCCGATC
649 AAATGAGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGCCCAATCCGATC
* *
17186002 TTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCA
714 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * * *
17186067 CGAAACGAGCGTACGGGTGCTCAACGGGCCAGAGGGTCGGGATGCGCAAGCCGAGGATCGGTAGG
779 TGAAACGAGCGTGCGGGTGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCAAGGATCGGTCGG
* * * *
17186132 GTCCCCCTCTACGTACTACCGATCCTGTTACCGCAACCCTCAGTCCAGTCCA
844 GTCCCCCTCTACGTGCTGCCGATCCTGCTACCACAACCCTCAGTCCAGTCCA
* *
17186184 ATCTTAGACTGGGAATGAACTCCGTACGCCTAAGCCAACTGACGAAACGAGC--G--GGCGGGCA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCAGGCGGGCA
* * * * *
17186245 CTACGCCGGCCAGGGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTGGGTGGGTTTAGAT
66 CTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGT
*
17186310 ACATCTTCATATTTCTGCATTCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
131 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * * *
17186375 AAGCCTTCACGTGAAGTTTCATGGCAAGACCACTCGTTTACTATTTTTCACAATTTTTGGAA-TC
196 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT-
* * * * *
17186439 TTTTATGGTATGGGATTTTTTAAAAAATTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACA
260 TTTTACGGTTTGGGATTTTTT-AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * * *
17186504 TGATCCATGTATTTTTGTTGGGATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATT
324 TGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* * * *
17186569 TTCTGACCATTTGAAAAAAGTGTCCCCATTTCATACACTTTAATAGCTATTGGCAGCAAACCTGT
389 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * * *
17186634 AAAATCTCAAATGCTCTTTAAGTGGGTGTGAGTTCTGGAGGATTCATGACA-GATAGGGGGCCAA
454 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA-AGGATAGGGGGCCAA
* * * *
17186698 CATAAGGGCTAAGTACCAGCACCAATCACACATCACGTGCGCACACCCCCCCGGCCCCCCGATCG
518 TATAAGGGCCAAGTACCAGCACCCATCGCACATCACGTGCGCACA-CCCCCCGGCCCCCCGATCG
* * * * *
17186763 -CCGGAACCCCAATGCTGCCGGTCAAGTTCTCCGACGATGCT-CTGACGATGGTGCCCC-AGCGA
582 TCTGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCAG-TGATGGTGCCCCGA-CGA
*
17186825 AGAAAAATGTA-GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTT
645 AGAAAAATG-AGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGG-CC----
* * *
17186889 CGATCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCATATGCTTA
704 CAATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT-C-----C---
* * ***
17186954 GACTGAGAATGAACTTCGAATGCCAAAGTCAACCCATGAAAAGAGTGTGCGGGTGCTCAGTTGGC
760 G--T----ATG--C--C---T----AAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAACCGGC
* * ** *
17187019 CAGAGGGGCGGGATGCGCAAGCCAAGGATGGGTCAGGTCCCCCTCTGTGTGCTGCCGATCTTGCT
808 CAGAGGGGCGGGATGCGCAAGCCAAGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCCTGCT
*** ***
17187084 ACCACAACCCTC-GATTTGGTTTG
873 ACCACAACCCTCAG-TCCAGTCCA
* *
17187107 ATCTTAGACTGGGAATGAAC-CTCGTATGCCTAAGCCAACCGACGAAATAAGCGGGCGGGCGGGC
1 ATCTTAGACTGGGAATGAACTC-CGTATGCCTAAGCCAACCGACG--A-AA-----CGAGCAGGC
* * * *
17187171 AGACGGGCACTACG-TCGGCCAGAGAGACGGGATGGGTAAGCCGTGGATCGATAGGGTGGTTGGT
57 AGGCGGGCACTACGCT-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
*
17187235 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
121 GGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
*
17187300 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATT
186 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
**
17187365 TTTGAAACTTTTTGTGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
251 TTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
* * *
17187430 GGTAGACGTGATCCTTGTA-TTTTTTTGGCAAGTACAAAAAAATTAAGCTAAAAACTCGAAGTGT
316 GGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* *
17187494 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAGACACTTTAATTGCTACTGGCA
381 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
17187557 CCAATCCCGT
Statistics
Matches: 2779, Mismatches: 308, Indels: 123
0.87 0.10 0.04
Matches are distributed among these distances:
888 129 0.05
889 69 0.02
890 179 0.06
891 470 0.17
892 508 0.18
893 11 0.00
896 2 0.00
897 51 0.02
899 217 0.08
900 99 0.04
901 470 0.17
902 52 0.02
903 1 0.00
905 10 0.00
906 2 0.00
908 1 0.00
912 3 0.00
914 1 0.00
916 1 0.00
919 1 0.00
922 2 0.00
923 141 0.05
925 1 0.00
926 2 0.00
931 4 0.00
933 98 0.04
934 50 0.02
935 203 0.07
936 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (895 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCAGGCGGGCA
CTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGT
ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTT
TTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
ATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAAGGATAGGGGGCCAATAT
AAGGGCCAAGTACCAGCACCCATCGCACATCACGTGCGCACACCCCCCGGCCCCCCGATCGTCTG
GAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCAGTGATGGTGCCCCGACGAAGAAAA
ATGAGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGCCCAATCCGATCTT
AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATG
AAACGAGCGTGCGGGTGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCAAGGATCGGTCGGGT
CCCCCTCTACGTGCTGCCGATCCTGCTACCACAACCCTCAGTCCAGTCCA
Found at i:17186030 original size:26 final size:26
Alignment explanation
Indices: 17186001--17186053 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17185991 CCAGTCCGAT
*
17186001 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17186027 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17186053 C
1 C
17186054 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17186927 original size:26 final size:26
Alignment explanation
Indices: 17186898--17186968 Score: 106
Period size: 26 Copynumber: 2.7 Consensus size: 26
17186888 TCGATCCGAT
* *
17186898 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17186924 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17186950 CTTAGACTGAGAATGAACT
1 CTTAGACTGGGAATGAACT
17186969 TCGAATGCCA
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17186976 original size:26 final size:26
Alignment explanation
Indices: 17186898--17186976 Score: 81
Period size: 26 Copynumber: 3.0 Consensus size: 26
17186888 TCGATCCGAT
* * * *
17186898 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTTCGAATG
*
17186924 CTTAGACT-AGGAATGAAC-TCCATATG
1 CTTAGACTGA-GAATGAACTTCGA-ATG
17186950 CTTAGACTGAGAATGAACTTCGAATG
1 CTTAGACTGAGAATGAACTTCGAATG
17186976 C
1 C
17186977 CAAAGTCAAC
Statistics
Matches: 43, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
25 1 0.02
26 38 0.88
27 4 0.09
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTTCGAATG
Found at i:17187716 original size:26 final size:26
Alignment explanation
Indices: 17187678--17187730 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17187668 CTGGTCCGAT
*
17187678 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATAAACTTCGTATG
*
17187704 CTTAGACTGGGAATAAACTTCGTATG
1 CTTAGACTAGGAATAAACTTCGTATG
17187730 C
1 C
17187731 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTTCGTATG
Found at i:17190439 original size:25 final size:26
Alignment explanation
Indices: 17190395--17190444 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 26
17190385 CTGGTCCGAT
*
17190395 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
17190421 CTTAGACT-GAAATGAACTCCGTAT
1 CTTAGACTGGAAATGAACTCCGTAT
17190445 CCCTAAGTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 15 0.65
26 8 0.35
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Done.