Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 95 of 195
Found at i:17344711 original size:12 final size:12
Alignment explanation
Indices: 17344694--17344718 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
17344684 ATCGACGAAA
17344694 CGAGCGGCTGGG
1 CGAGCGGCTGGG
17344706 CGAGCGGCTGGG
1 CGAGCGGCTGGG
17344718 C
1 C
17344719 ACTACGTCGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.28, G:0.56, T:0.08
Consensus pattern (12 bp):
CGAGCGGCTGGG
Found at i:17348003 original size:26 final size:26
Alignment explanation
Indices: 17347967--17348021 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
17347957 TCGATCTGAT
*
17347967 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
17347993 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
17348019 CTT
1 CTT
17348022 GAGTCAACCC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:17351582 original size:26 final size:26
Alignment explanation
Indices: 17351542--17351594 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17351532 CCGATCCAGT
* *
17351542 CTTAGACTGGTAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17351568 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17351594 C
1 C
17351595 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17351829 original size:26 final size:26
Alignment explanation
Indices: 17351790--17351839 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
17351780 GATGGTGTGT
*
17351790 CTTAGACTGGGAATGAACTCCGTACG
1 CTTAGACTGAGAATGAACTCCGTACG
17351816 CTTAGACTGAGAATGAACTCCGTA
1 CTTAGACTGAGAATGAACTCCGTA
17351840 TGCCTAAGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTACG
Found at i:17352718 original size:26 final size:26
Alignment explanation
Indices: 17352689--17352741 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17352679 CCGGTCCGAT
17352689 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17352715 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17352741 C
1 C
17352742 CTAAGTCAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17353619 original size:159 final size:159
Alignment explanation
Indices: 17353292--17353608 Score: 341
Period size: 159 Copynumber: 2.0 Consensus size: 159
17353282 ACCCTAATGA
* * **
17353292 CGGGGATCGACTGGGTCCCCCTCTGCGTGCTATCGATCCTACTACCGGAACCCTCGGTCTAGCCC
1 CGGGGATCGACCGGGTCCCCCTCTGCGTGATATCGATCCTACTACCACAACCCTCGGTCTAGCCC
* * * * * * **
17353357 AATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTT
66 AATCTTAGACTGGGAAGGAACTCCATACGACTAAGCCAACCCATGAAACAAGCGGGCGGGCACTT
* * * *
17353422 AGCCGGCCAGAGGGGCAGGATGTGTAAGT
131 AGCCGGCCAGAGAGACAGGATGCGCAAGT
* * * * * * *
17353451 CGGGGATCGACCGGGTCCCCCTTTGCGTGATGTCGATCCTGCTACCACAACCTTCGGTCTGGTCT
1 CGGGGATCGACCGGGTCCCCCTCTGCGTGATATCGATCCTACTACCACAACCCTCGGTCTAGCCC
* * * *
17353516 GATCTTAGGCTGGGAAGGAACTCCGTACGACTAAGCCAACCGATGAAACAAGCGGGCGGGCAC-T
66 AATCTTAGACTGGGAAGGAACTCCATACGACTAAGCCAACCCATGAAACAAGCGGGCGGGCACTT
* *
17353580 ACGCCGTCTAGAGAGAC-GAGATGCGCAAG
131 A-GCCGGCCAGAGAGACAG-GATGCGCAAG
17353609 CTGTGGATCG
Statistics
Matches: 127, Mismatches: 29, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
158 3 0.02
159 124 0.98
ACGTcount: A:0.22, C:0.28, G:0.30, T:0.20
Consensus pattern (159 bp):
CGGGGATCGACCGGGTCCCCCTCTGCGTGATATCGATCCTACTACCACAACCCTCGGTCTAGCCC
AATCTTAGACTGGGAAGGAACTCCATACGACTAAGCCAACCCATGAAACAAGCGGGCGGGCACTT
AGCCGGCCAGAGAGACAGGATGCGCAAGT
Found at i:17354760 original size:826 final size:835
Alignment explanation
Indices: 17353157--17358560 Score: 4594
Period size: 900 Copynumber: 6.2 Consensus size: 835
17353147 GGATTTTTTA
* *
17353157 AAATCCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
1 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* * * *
17353222 CAAGTACCAGCACCCAACGCACATCATTTGGGCAC-CCCCC-CGGCCCCCCCGATCGTCGGAACC
66 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGGCCCCCCCGATCGCCGGAACC
* * * * * * * *
17353285 CTAATGACGGGGATCGACTGG-GT-CCCC-CT-CTGCGTGCTATC-G-AT-CCTACTACCGGAAC
131 CCAATGCCGGGGATCGGCTGGCGTGCCCCGCTACTGCGTGCTACCAGCATCCCTGCTGCTGCAAC
** * * *
17353343 CCTCGGTCTAG-CCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACG
196 CCTCGGTCCGGTCCGAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATG
* * * * * * * *
17353407 AGCGTGCGGGTGCTTAGCCGGCCAGAGGGGCAGGATGTGTAAGTCGGGGATCGACCGGGTCCCCC
261 AACGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCC
* * * ** * * * ** *
17353472 TTTGCGTGATGTC-GATCCTGCTACCACAACCTTCGGTCTGGTCTGATCTTAGGCTGGGAAGGAA
326 TCTGCGTGCTG-CAGATCCTGCTACCACAACCCTCCATCCGATCCGATCTTAAACTGGGAATGAA
* * * * *
17353536 CTCCGTACGACTAAGCCAACCGATGAAAC-A----A--G-CGGGCGGGCACTACGCCGTCTAGAG
390 CTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGACGGGCGGGCACTACGCCGACCAGAG
*
17353593 AGACGAGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATC-TCTTCATATTT
455 AGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA-CATCTTCATATTT
* * * **
17353657 TTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCCGACAATGGTCCCTTAAGCCTTCACGTGA
519 CTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
* * * * * **
17353722 AGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCAAGATTTTTGAAACTTTTTACGGTTGAAAA
584 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTCAGGA
* * * *
17353787 TTTTTTGAAATTTTTTCGGAAGGA-TTTCTGGCTCCAAACTTGGTAGACGTGATCCTTGTATTTT
649 TTTTTTAAAATTTTTTCAGAAGGAGTTT-TGGCCCCAAACTTGGTAGACGTGATCCCTGTATTTT
* * * * * * *
17353851 TGTTGGCACGCATAAAACAATTCAGCTAAAACCTCAAAGTGTAAAACATTTTCTGACCATTTGAA
713 TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAACATTTTGTGACCATTTGAA
* * *
17353916 AAAAGTGTCCCCATTTCAGACACTTTAAGGGCTACTGGCAGCAAACCTGTAAAATTTC
778 AAAAGTGTCCCAATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* * *
17353974 AAATGCCCTTTATGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGACAGGGGGCCAATATAAGGGC
1 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* * *
17354039 CAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCTCGACCCCCCCGATCGTCGGAACC
66 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGGCCCCCCCGATCGCCGGAACC
17354104 CCAATGCCGGGGATCGGCTGGC-T-CCCC-CT-CTGCGTGCTACC-G-AT-CCTGCTGCTGCAAC
131 CCAATGCCGGGGATCGGCTGGCGTGCCCCGCTACTGCGTGCTACCAGCATCCCTGCTGCTGCAAC
* * * *
17354162 CCTCGGTCCGGTTC-AATCTTAGACTGGGAATGAACTTCGCATGCCTAAGTCAACCGATGAAATG
196 CCTCGGTCCGGTCCGAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATG
* * * * *
17354226 AACGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAAGTGTAAGCCGGGGATCGGCCGGGTCCCCC
261 AACGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCC
* * *
17354291 TCTACGTGCTGTC-GATCCTGCTGCTACAACCCTCCATCCGATCCGATCTTAAACTGGGAATGAA
326 TCTGCGTGCTG-CAGATCCTGCTACCACAACCCTCCATCCGATCCGATCTTAAACTGGGAATGAA
17354355 CTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGACGGGCGGGCACTACGCCGACCAGAG
390 CTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGACGGGCGGGCACTACGCCGACCAGAG
* * *
17354420 AGACGGGATACGCAAGCCGTGGATCGATAGGG-GGTAGGTGGGTTTAGGCACATCTTTATATTTC
455 AGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
*
17354484 TGTATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
520 TGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
* * * *
17354549 GTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACCATTTTTGAAACTTTTTGCGGTTCAGGTT
585 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTCAGGAT
* * * * *
17354614 TTTTTAAAATTTTTTCAGATGGAGTTTTGACCCAAAACTCGGTAGACGTGATCCCTGTCTTTTTG
650 TTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCCTGTATTTTTG
* * * *
17354679 TTGGCATGCTCAAAAGAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAA
715 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAACATTTTGTGACCATTTGAAAA
* *
17354744 AAGTGTCCCAATTTCAGACACTTTAATGGCTACTGGAAGCAAACCTATAAAATCTC
780 AAGTGTCCCAATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* *
17354800 AAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGGCCACTATAAGGGC
1 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* * * * *
17354865 CAAGAACCAGCACCCATCGCACATCATGTGTGCACACCCCCCCGGCCCTCCCGATCGCCGGATCC
66 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGGCCCCCCCGATCGCCGGAACC
** * **
17354930 CCAATGCCGCCGATCAGGTTCTCTGGCGATGCTCCGACGATGGTGCCCCGGTGAGGAAAAATACG
131 CCAATGCCGGGGATC-GG----CTGGCG-TGC-CC--CGCTACTG---C-GT---G-------C-
*
17354995 GCACCAGCACATGCCCGAGCCTAGCATGTGCTGCTGTAACCCTCAATCCGGTCTGATCTTAGACT
172 -TACCAG--CAT---C---CCT-GC---TGCTGC---AA-CC-C--T-C-G---G-TC-----C-
* * * * *
17355060 GGCAATGAACTCCATATGCTTAGACAGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAA-C
205 GG---T---C-CGA-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATG
** * * *
17355124 AAGCGTATGGGCGCTCAACCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGATCGGGACCCC
261 AA-CGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCC
* * * **
17355189 CTCTGTGTGCTGCTGATCCTACTACCGTAACCCTTGGTCCAGTCTGGTTCGATCCGATCTTAAAC
325 CTCTGCGTGCTGCAGATCCTGCTACCACAACCC----TCCA-TC-----CGATCCGATCTTAAAC
* * * * *
17355254 TGGGAGTGAACTCTGTATGCCTAAGCCAACCAACGAAACGAGCGGGCAGGCGGGCGGGCGGGCAT
380 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GG-A--CGGACGGGCGGGCAC
* * * **
17355319 TACGCCGACCAGAGAGACGGGATGCGCAGGTCGTGGATCGATAGGGTGGTAGGTGGGTTTATTCA
441 TACGCCGACCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
17355384 CATCTTCATATTTCTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
506 CATCTTCATATTTC-TGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * *
17355449 AAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTCAAAACTT
570 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTT
* * *
17355514 TTTGCTGTTCGGGATTTTTTAAAATTTTTTCAGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTG
635 TTTGCGGTTCAGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* * *
17355579 ATCCTTGTATTTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
700 ATCCCTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAACATTT
* * *
17355644 TGTGACCATTTGAAAAAAGTATCACAATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTA
764 TGTGACCATTTGAAAAAAGTGTCCCAATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
17355709 AAATCTC
829 AAATCTC
*
17355716 AAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA-GGGGCCAATATAA-GGC
1 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* * *
17355779 CAAGTACCAGCACCCACCGCACATCATGTGCGCAAACCCCCT-GGCCCCCCCGATCGCCAGAACC
66 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGGCCCCCCCGATCGCCGGAACC
* * * *
17355843 CTAATGCTGTCGGTTAGGTTCTCCGGCGATGATCCGACGATGGTGCCCCGACGATGAAAAATACG
131 CCAATGC---CGG---GG--AT-CGGC--TG----G-C----GTGCCCCG-C--T----ACTGCG
*
17355908 -GC-ACCAGCACATGCCCGAGCCCAGCTTGTACTGTCGCAACCTGCGGTCCGGTCCGAACTTAGA
169 TGCTACCAG--CAT-------CCCTGC-TG--C--T-GCAACC--C--T-CGGT-----C-----
* * **
17355971 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAATCAACCCACAAAA
204 C---G---G---TCCGAAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAA
* * * * ** * * * * *
17356036 CGAGCGTGCAGGTGCTCAATTGACCAGATGGGCGGGATGCGCAAGTCGGGGATCGATCAGGTCCC
259 TGAACGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCC
* * * * ** *** * * * *
17356101 TCTTTGTGTGCTGCAGATCCTG-TGGCTGCAACCCTTGGTCTGATCTGACCTTAGACTGGGAATG
324 CCTCTGCGTGCTGCAGATCCTGCT-ACCACAACCCTCCATCCGATCCGATCTTAAACTGGGAATG
* * * *
17356165 AGCTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCAGGCGGGCGGGCACTACGTCGA
388 AACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGAC-GG-A--CGGGCGGGCACTACGCCGA
*
17356230 CCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGCTGGTAGGTGGGTTTAGGCACATCTTCA
449 CCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* * *
17356295 TATTTTTGCATGCAAATGCCATTTTTATGGCTTGTAAATTAATACAATGGTCCCTTAAGCCTTCA
514 TATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* * *
17356360 CGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTAAAACTTTTTGGGGTT
579 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTT
* * **
17356425 CGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGATATGAT-CCTAGT
644 CAGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCCT-GT
* * ** *
17356489 ATTTTT-TTAGAATGCACAAAAAAATTCAGCTAAAAACTTTAAGTGTACAACATTTTGTCACCAT
708 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAACATTTTGTGACCAT
*
17356553 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
773 TTGAAAAAAGTGTCCCAATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
17356616 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
1 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
*
17356681 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCT--GACCCCCC-ATCGCCGGAACC
66 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGGCCCCCCCGATCGCCGGAACC
*
17356743 CCAATGCCGTCGGTCAGGTTCTCCGGCAATGCTTTGACGATGGTGCCCCAGCGAAGAAAAATGTG
131 CCAATG-C--CGG---GG--AT-CGGC--TG----G-C----GTGCCCC-GC-----------T-
* * ** * * *
17356808 GCACCAGCGCATGCT-CGAGCCTATCATGTGCTGCCGCAATCCGT-GGTCCGATCCGATCTTAGA
163 --A-CTGCG--TGCTACCAG-C-ATC-CCTGCTGCTGCAA-CCCTCGGTCCG----G-TC-C---
*
17356871 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCATGAAA
210 --------G-A------AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAA
* * * * ** * * *
17356936 -CAAGCGTGCAGGCGCTCAGCCAGCCAGAGGGAAGGGATACGCAAGCCGAGGATCGATCGGGTCC
259 TGAA-CGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCC
* * * * ** *** * * * *
17357000 CGCTCTACGTGCTACCGATCCTGCTGTCACAACCCTGGGTCTGATCCGATATTAGACTAGGAATG
323 CCCTCTGCGTGCTGCAGATCCTGCTACCACAACCCTCCATCCGATCCGATCTTAAACTGGGAATG
* *
17357065 AATTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGG-C-GAGCTGGCAGACGGGCACTACGTC
388 AACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GGACGGA-C-GG--G-CGGGCACTACGCC
* * *
17357128 GGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
447 GACCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* *
17357193 CATATTTCTGCATGCCAATGCCATTTTTATGACTTGTAAATTCATACAGTGGTCCCTTAAGCCTT
512 CATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * * ** *
17357258 CATGTGAAGTTTCATGGCAAGATGACTCGTTTTTTATTTTTCACGATTTTGGAAACTTTTTACGG
577 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGG
* * * * *
17357323 -TCCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCATACATGGTAGACGTGATCCTT
642 TTCAG-GATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCCT
* * * *
17357387 GTATTTTTATTGGCATGCACAAAAAAATTCAGCGAGAAACTCGAAGTGTACAAGATTTTGTGACC
706 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAACATTTTGTGACC
* * *
17357452 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAAGGCTACAGGCAGCAAACCTGTAAAATCTC
771 ATTTGAAAAAAGTGTCCCAATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* *
17357517 AAATGCTCTTTAAGGGGGTGTGAGTTCTCAAAGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
1 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* * * * * * *
17357582 CAAGTACCAGCACCCATTGCACATCATGTACGCACACCCCCCACCGGGCCACCCAATCGTCGGAA
66 CAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC-TCGGCCCCCCCGATCGCCGGAA
* * *
17357647 CCCCAATGCCGCTGGTCAGGTTCTCCGGCGATGCTTCGACGATGGTACCCCGACGAAGAAAAATG
129 CCCCAATG-C-C-GG---GG--AT-CGGC--TG----G-CG-T-G--CCCCG-C------TACTG
* *
17357712 CG-GC-ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTTCG-ATCTT
167 CGTGCTACCAG--CAT-------CCCTGC---TGCTG---CAACCCTCGGTCCGGTCCGAATCTT
17357774 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAAGCCTAAGTCAACTCACG
217 AGACTGGGAATGAACTCCGTATGC-----CT---AA-G---T-C--AA-CC-----C-A-T---G
* * * * *** * ** ** *
17357839 AAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGAATGGGATGTGCAAGCTAGGGATCGGTCAGGT
256 AAATGAACGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGT
* * * * *** * ** * * *
17357904 CCCCTTCTGCGTGCGGCTGATCTTGCTACTGTATCCCTCGGTCCGGTTCGATCTTAGACTGGGAA
321 CCCCCTCTGCGTGCTGCAGATCCTGCTACCACAACCCTCCATCCGATCCGATCTTAAACTGGGAA
* * * ** *
17357969 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGACGGGCGGGCGGTCACTACGTTGGCC
386 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGACGGGCGGGCACTACGCCGACC
* * * *
17358034 AGAAAGACGGGATGTGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
451 AGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
* *
17358099 TTTCTACATGACAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
516 TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
* * * * *
17358164 TGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGATTCG
581 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTCA
* * * **
17358229 GGATTTTTTAAACTTTTTTCAGAAGGAGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTAAC
646 GGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCCTGTATT
* *
17358294 TTTGTTGGCATGCACAAAAAAAATTCAGCTAAAAACTCGAAGTGTGCAAGATTTTGTGACCATTT
711 TTTGTTGGCATGCAC-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAACATTTTGTGACCATTT
17358359 GAAAAAAGTGTCCCAATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
775 GAAAAAAGTGTCCCAATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* *
17358420 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGTTGAGGGATAGGGGGCCAATATAAGGGA
1 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* * * *
17358485 CAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCACCCCTGCCCCCCCGATCGTCGGA
66 CAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCC-CCTCGGCCCCCCCGATCGCCGGA
17358550 ACCCCAATGCC
128 ACCCCAATGCC
17358561 ATCGATCAGG
Statistics
Matches: 3835, Mismatches: 481, Indels: 457
0.80 0.10 0.10
Matches are distributed among these distances:
817 91 0.02
818 5 0.00
819 259 0.07
820 2 0.00
824 1 0.00
825 1 0.00
826 435 0.11
827 57 0.01
831 5 0.00
833 1 0.00
834 1 0.00
835 2 0.00
837 1 0.00
838 1 0.00
839 2 0.00
842 1 0.00
843 2 0.00
846 1 0.00
853 1 0.00
855 3 0.00
856 1 0.00
859 2 0.00
866 3 0.00
867 2 0.00
870 6 0.00
873 2 0.00
874 2 0.00
875 1 0.00
877 1 0.00
878 1 0.00
879 1 0.00
880 27 0.01
881 4 0.00
882 2 0.00
883 3 0.00
885 3 0.00
888 3 0.00
889 4 0.00
890 1 0.00
892 2 0.00
893 1 0.00
894 7 0.00
895 6 0.00
896 5 0.00
897 8 0.00
898 7 0.00
899 121 0.03
900 640 0.17
901 249 0.06
902 488 0.13
903 345 0.09
904 33 0.01
905 19 0.00
906 196 0.05
907 2 0.00
908 4 0.00
909 61 0.02
910 2 0.00
911 4 0.00
912 11 0.00
913 225 0.06
914 73 0.02
915 188 0.05
916 169 0.04
917 3 0.00
918 3 0.00
919 3 0.00
921 3 0.00
922 1 0.00
923 2 0.00
924 3 0.00
926 2 0.00
927 5 0.00
928 2 0.00
931 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (835 bp):
AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGGCCCCCCCGATCGCCGGAACC
CCAATGCCGGGGATCGGCTGGCGTGCCCCGCTACTGCGTGCTACCAGCATCCCTGCTGCTGCAAC
CCTCGGTCCGGTCCGAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATG
AACGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCC
TCTGCGTGCTGCAGATCCTGCTACCACAACCCTCCATCCGATCCGATCTTAAACTGGGAATGAAC
TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGACGGGCGGGCACTACGCCGACCAGAGA
GACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
GCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTCAGGATT
TTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCCTGTATTTTTGT
TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAACATTTTGTGACCATTTGAAAAA
AGTGTCCCAATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
Found at i:17355994 original size:26 final size:26
Alignment explanation
Indices: 17355965--17356017 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17355955 CCGGTCCGAA
17355965 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17355991 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17356017 C
1 C
17356018 CTAAATCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17356696 original size:902 final size:899
Alignment explanation
Indices: 17354179--17358886 Score: 6305
Period size: 900 Copynumber: 5.2 Consensus size: 899
17354169 CCGGTTCAAT
* * * * * *
17354179 CTTAGACTGGGAATGAACTTCGCATGCCTAAGTCAACCGATGAAATGAACGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG-
* * * * ** * * *
17354244 CGGCCAGAGGGGCGGGAAGTGTAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGTCGATCC
65 CGACCAGA-GGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCTCTCTGCGTGCTGCCGATCC
* * *** * *
17354309 TGCTGCTACAACCCTCCATCCGATCCGATCTTAAACTGGGAATGAACTCCGTATGCCTAAGCCAA
129 TGCTACTGCAACCCTTGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
17354374 CCGACGAAACGAGCGGACGG-A--CGGGCGGGCACTACGCCGACCAGAGAGACGGGATACGCAAG
194 CCGACGAAACGAGCGGGCGGCAGGCGGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAG
* *
17354436 CCGTGGATCGATAGGG-GGTAGGTGGGTTTAGGCACATCTTTATATTTCTGTATGCCAATGCCAT
259 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
*
17354500 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATG
324 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* ** * *
17354565 ACTCGTTTTCTATTTTTCACCATTTTTGAAACTTTTTGCGGTTCAGGTTTTTTTAAAATTTTTTC
389 ACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTC
* * * * * * * *
17354630 AGATGGAGTTTTGACCCAAAACTCGGTAGACGTGATCCCTGTCTTTTTGTTGGCATGCTCAAAAG
454 AGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAA
*
17354695 AATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCA
518 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCA
* *
17354760 GACACTTTAATGGCTACTGGAAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
583 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
17354825 TCTAGAGGTTTGATGAGGGATAGGGGGCCACTATAAGGGCCAAGAACCAGCACCCATCGCACATC
648 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * * * *
17354890 ATGTGTGCACACCCCCCCGGCCCTCCCGATCGCCGGATCCCCAATGCCGCCGATCAGGTTCTCTG
713 ATGTGCGCACACCCCCCTGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
** * *
17354955 GCGATGCTCCGACGATGGTGCCCCGGTGAGGAAAAATACGGCACCAGCACATGCCCGAGCCTAGC
778 GCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGC
* ** * * *
17355020 ATGTGCTGCTGTAACCCTCAATCCGGTCTGATCTTAGACTGGCAATGAACTCCATATG
843 ATGTGCTGC-GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * ** *
17355078 CTTAGACAGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCGTATGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC-AG
* * * * * *
17355143 CGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGATCGGGACCCCCTCTGTGTGCTGCTGATCC
65 CGACCAGA-GGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCTCTCTGCGTGCTGCCGATCC
* * * * * *
17355208 TACTACCGTAACCCTTGGTCCAGTCTGGTTCGATCCGATCTTAAACTGGGAGTGAACTCTGTATG
129 TGCTACTGCAACCCTT-G----GTC----T-GATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
17355273 CCTAAGCCAACCAACGAAACGAGCGGGCAGGCGGGCGGGCGGGCATTACGCCGACCAGAGAGACG
184 CCTAAGCCAACCGACGAAACGAGCGGGC-GGCAGGCGGGCGGGCACTACGTCGACCAGAGAGACG
* * **
17355338 GGATGCGCAGGTCGTGGATCGATAGGGTGGTAGGTGGGTTTATTCACATCTTCATATTTCTTGCA
248 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC-TGCA
*
17355403 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
312 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* *
17355468 CATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTCAAAACTTTTTGCTGTTCGGGATTTTT
377 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTT
*
17355533 TAAAATTTTTTCAGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTTG
442 TAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA--TTTTTTTG
17355598 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
505 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
* * *
17355663 TATCACAATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTA
570 TGTCCCAATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
*
17355728 AGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA-GGGGCCAATATAA-GGCCAAGTACCAGCA
635 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * * * *
17355791 CCCACCGCACATCATGTGCGCA-AACCCCCTGGCCCCCCCGATCGCCAGAACCCTAATGCTGTCG
700 CCCATCGCACATCATGTGCGCACACCCCCCTGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCG
* * * *
17355855 GTTAGGTTCTCCGGCGATGATCCGACGATGGTGCCCCGACGATGAAAAATACGGCACCAGCACAT
765 GTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACAT
* * * *
17355920 GCCCGAGCCCAGCTTGTACTGTCGCAA-CCTGCGGTCCGGTCCGAACTTAGACTGGGAATGAACT
830 GCCCGAGCCTAGCATGTGCTG-CGCAACCCT-CGGTCCGGTCCGATCTTAGACTGGGAATGAACT
17355984 CCGTATG
893 CCGTATG
* * * * *
17355991 CTTAGACTGGGAATGAACTCCGTATGCCTAAATCAACCCACAAAACGAGCGTGCAGGTGCTCAAT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC-AG
* * * * * *
17356056 TGACCAGATGGGCGGGATGCGCAAGTCGGGGATCGATCAGGTCCCTCTTTGTGTGCTGCAGATCC
65 CGACCAGA-GGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCTCTCTGCGTGCTGCCGATCC
* * * *
17356121 TG-TGGCTGCAACCCTTGGTCTGATCTGACCTTAGACTGGGAATGAGCTCCGTATGCCTAAGCCA
129 TGCT-ACTGCAACCCTTGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* *
17356185 ACTGACGAAACGAGCGGGCGGGCAGGCGGGCGGGCACTACGTCGACCAGAGAGACGAGATGCGCA
193 ACCGACGAAACGAGCGGGC-GGCAGGCGGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCA
* * *
17356250 AGCCGTGGATCGATAGGCTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCAAATGCC
257 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
17356315 ATTTTTATGGCTTGTAAATTAATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
322 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *
17356380 CGACTCATTTTCTATTTTTCATGATTTTTAAAACTTTTTGGGGTTCGGGATTTTTTAAAATTTTT
387 CGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT
* ** * * *
17356445 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGATATGATCCTAGTATTTTTTTAGAATGCACAAAA
452 TCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTGGCATGCACAAAA
** * * *
17356510 AAATTCAGCTAAAAACTTTAAGTGTACAACATTTTGTCACCATTTGAAAAAAGTGTCCCCATTTC
517 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTC
17356575 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
582 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
17356640 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
647 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
*
17356705 CATGTGCGCACA-CCCCCT-GACCCCCC-ATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
712 CATGTGCGCACACCCCCCTGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
* ** * * *
17356767 GGCAATGCTTTGACGATGGTGCCCC-AGCGAAGAAAAATGTGGCACCAGCGCATGCTCGAGCCTA
777 GGCGATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTA
* * *
17356831 TCATGTGCTGCCGCAATCCGT-GGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
841 GCATGTGCTG-CGCAA-CCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
17356891 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCATGAAACAAGCGTGCAGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
17356956 CAGCCAGAGGGAAGGGATACGCAAGCCGAGGATCGATCGGGTCCCGCTCTACGTGCTACCGATCC
66 GA-CCAGAGGG-CGGGATGCGCAAGCCGGGGATCGATCGGGTCCCTCTCTGCGTGCTGCCGATCC
* * * * * *
17357021 TGCT-GTCACAACCCTGGGTCTGATCCGATATTAGACTAGGAATGAATTCCGTATGCCTAAGCCA
129 TGCTACT-GCAACCCTTGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
17357085 ACCGACGAAACGAGCAGGCGAGCTGGCAGACGGGCACTACGTCGGCCAGAGAGACGGGATGCACA
193 ACCGACGAAACGAGCGGGCG-GCAGGCGGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCA
17357150 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
257 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* * *
17357215 ATTTTTATGACTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGA
322 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * ** * * *
17357280 TGACTCGTTTTTTATTTTTCACGATTTTGGAAACTTTTTACGGTCCGAGATTTTTTAAAATTTTT
387 CGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT
* * *
17357345 TCGGAAGGAGTTTTGGCCCCATACATGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAA
452 TCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAA
* * *
17357410 AAAATTCAGCGAGAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
516 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTT
* *
17357475 CAGACACTTTAAAGGCTACAGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
581 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
17357540 GTTCTCAAAGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACA
646 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * * *
17357605 TCATGTACGCACACCCCCCACCGGGCCACCCAATCGTCGGAACCCCAATGCCG-CTGGTCAGGTT
711 TCATGTGCGCACA-CCCCC-CTGGCCCCCCCGATCGCCGGAACCCCAATGCCGTC-GGTCAGGTT
* *
17357669 CTCCGGCGATGCTTCGACGATGGTACCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
773 CTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * *
17357734 CCAGCATGTGCTGCCACAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATG
838 CTAGCATGTGCTG-CGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
17357797 CTTAGACTGGGAATGAACTCCGTAAGCCTAAGTCAACTCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * ** * * * *
17357862 CAGCCAGAGGAATGGGATGTGCAAGCTAGGGATCGGTCAGGTCCC-CTTCTGCGTGCGGCTGATC
66 GA-CCAGAGG-GCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCTC-TCTGCGTGCTGCCGATC
* * * * * * *
17357926 TTGCTACTGTATCCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
128 CTGCTACTGCAACCCTTGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * *
17357991 ACCGACGAAACGAGCAGAC-G--GGCGGGCGGTCACTACGTTGGCCAGAAAGACGGGATGTGCAA
193 ACCGACGAAACGAGCGGGCGGCAGGCGGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAA
* * *
17358053 GCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGACAATGCCA
258 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
17358118 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
323 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * *
17358183 GACTTGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGATTCGGGATTTTTTAAACTTTTTT
388 GACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
* * *
17358248 CAGAAGGAGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTAACTTTGTTGGCATGCACAAAA
453 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT-ATTTTTTTGGCATGCAC-AAA
*
17358313 AAAATTCAGCTAAAAACTCGAAGTGTGCAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTT
516 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTT
17358378 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
581 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
17358443 GTTCTCGAGGTTTGTTGAGGGATAGGGGGCCAATATAAGGGACAAGTACCAGCACCCATCACACA
646 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * *
17358508 TCATGTGCGCACACCCCCACCCCT-GCCCCCCCGATCGTCGGAACCCCAATGCCATCGATCAGGT
711 TCATGTGCGCACA---CC-CCCCTGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGT
* *
17358572 TCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCTCCAGCACATGCCCGAG
772 TCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* * * *
17358637 CCTAGCATGCGCTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCTGTATG
837 CCTAGCATGTGCTGC-GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
17358701 CTTAGACAGGGAATGAACTCCGTATTCCTAAGTCAACCTATGAAACGAGCGTTCGGGCGCTCATC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA-G
* * * *
17358766 CGGCCAGAGGGTTGGGATGCACAAGCCGGGGATAGATCGGGTCCCTCTCTGCGTGCTGCCGATCC
65 CGACCAGAGGG-CGGGATGCGCAAGCCGGGGATCGATCGGGTCCCTCTCTGCGTGCTGCCGATCC
* * *
17358831 TGCTA-TCGCAA-CCTTCGGTCTGGTCCGATCTTAGATTGAGAATG-ACGTCCGTATGC
129 TGCTACT-GCAACCCTT-GGTCTGATCCGATCTTAGACTGGGAATGAAC-TCCGTATGC
17358887 TTGGACTGGG
Statistics
Matches: 3355, Mismatches: 396, Indels: 111
0.87 0.10 0.03
Matches are distributed among these distances:
899 123 0.04
900 728 0.22
901 229 0.07
902 484 0.14
903 354 0.11
904 298 0.09
905 18 0.01
906 318 0.09
907 2 0.00
908 3 0.00
909 58 0.02
910 2 0.00
912 5 0.00
913 320 0.10
914 64 0.02
915 185 0.06
916 159 0.05
917 5 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (899 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
GACCAGAGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCTCTCTGCGTGCTGCCGATCCTG
CTACTGCAACCCTTGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
GACGAAACGAGCGGGCGGCAGGCGGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCC
GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
TCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAG
AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTGGCATGCACAAAAAAAT
TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAGAC
ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
TGCGCACACCCCCCTGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCG
ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATG
TGCTGCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:17356894 original size:26 final size:26
Alignment explanation
Indices: 17356865--17356917 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17356855 CCGATCCGAT
17356865 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17356891 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17356917 C
1 C
17356918 CTAAGTTAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17357800 original size:26 final size:26
Alignment explanation
Indices: 17357771--17357820 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
17357761 CCGGTTCGAT
17357771 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17357797 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
17357821 AGCCTAAGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17358704 original size:26 final size:26
Alignment explanation
Indices: 17358675--17358725 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
17358665 CCGGTCTGAT
*
17358675 CTTAGACTA-GGAATGAACTCTGTATG
1 CTTAGAC-AGGGAATGAACTCCGTATG
17358701 CTTAGACAGGGAATGAACTCCGTAT
1 CTTAGACAGGGAATGAACTCCGTAT
17358726 TCCTAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:17359798 original size:26 final size:26
Alignment explanation
Indices: 17359769--17359818 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
17359759 CCGGTCCGAT
* *
17359769 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17359795 CTTAGACTAGGAATGAACTCCGTA
1 CTTAGACTAGGAATGAACTCCGTA
17359819 AGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17361578 original size:26 final size:26
Alignment explanation
Indices: 17361542--17361594 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17361532 CCAGCCCGAT
*
17361542 CTTAGATTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
17361568 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
17361594 C
1 C
17361595 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:17361951 original size:26 final size:26
Alignment explanation
Indices: 17361922--17361974 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17361912 CCAGTCCGAT
17361922 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17361948 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17361974 C
1 C
17361975 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17362162 original size:380 final size:380
Alignment explanation
Indices: 17361457--17362166 Score: 1039
Period size: 380 Copynumber: 1.9 Consensus size: 380
17361447 GATGCTCCGA
** *
17361457 CGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGC
1 CGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
* *
17361522 AACCCTCGGTCCAGCCCGATCTTAGATTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACT
66 AACCCTCGGTCCAGCCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * *
17361587 CTGTATGCCTAAGTCAACTCCCGAAACAAGTGTGCGGGTGATCAGCCTGCCAAAGGGGCAGGATG
131 CCGTATGCCTAAGTCAACTCCCGAAACAAGCGTGCGGGCGATCAGCCTGCCAAAGGGGCAGGATG
* * * * * * ** **
17361652 CACAAGTCGGGGATCGGTCGGGTCCCCCTTTGCATGTTGCCAATCCTGCTACCGTAACCCTTGGT
196 CACAAGCCGAGGATCGGTCGGGGCCCCCTCTACATGCTGCCAATCCTGCTACCACAACCCCAGGT
*
17361717 CCGGTCTGATCTTGGACTAGAAATGAACTCCATATGCCTAAGCCAACCGACGAAACAAGCGGGCG
261 CCGGTCTGATCTTAGACTAGAAATGAACTCCATATGCCTAAGCCAACCGACGAAACAAGCGGGCG
17361782 GGCGGACGGGTGGGCACTATATTGACCAGAGAGATGGGATGCGCAAGCCGTGGAT
326 GGCGGACGGGTGGGCACTATATTGACCAGAGAGATGGGATGCGCAAGCCGTGGAT
* * * *
17361837 CGATGGTGCCTCGGTGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGT
1 CGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
*
17361902 AACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
66 AACCCTCGGTCCAGCCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * ** *
17361967 CCGTATGCCTAAGTCAAC-CCACGAAACGAGCGTGCGGGCGCTCAGCC-GACCAGGGGGGCGGGA
131 CCGTATGCCTAAGTCAACTCC-CGAAACAAGCGTGCGGGCGATCAGCCTG-CCAAAGGGGCAGGA
** * * *
17362030 TGTGCAAGCCGAGGATCGGTCGGGGCCCCCTCTACGTGCTGCCGATCCTGCTGCCACAACCCCAG
194 TGCACAAGCCGAGGATCGGTCGGGGCCCCCTCTACATGCTGCCAATCCTGCTACCACAACCCCAG
* * *
17362095 GTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAA-CGG
259 GTCCGGTCTGATCTTAGACTAGAAATGAACTCCATATGCCTAAGCCAACCGACGAAAC-AAGCGG
17362159 GCGGGCGG
323 GCGGGCGG
17362167 GCACTATGCC
Statistics
Matches: 290, Mismatches: 37, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
379 3 0.01
380 285 0.98
381 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.30, T:0.19
Consensus pattern (380 bp):
CGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
AACCCTCGGTCCAGCCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
CCGTATGCCTAAGTCAACTCCCGAAACAAGCGTGCGGGCGATCAGCCTGCCAAAGGGGCAGGATG
CACAAGCCGAGGATCGGTCGGGGCCCCCTCTACATGCTGCCAATCCTGCTACCACAACCCCAGGT
CCGGTCTGATCTTAGACTAGAAATGAACTCCATATGCCTAAGCCAACCGACGAAACAAGCGGGCG
GGCGGACGGGTGGGCACTATATTGACCAGAGAGATGGGATGCGCAAGCCGTGGAT
Found at i:17363664 original size:26 final size:26
Alignment explanation
Indices: 17363635--17363687 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17363625 TCGGTCCGAT
*
17363635 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17363661 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17363687 C
1 C
17363688 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17364560 original size:26 final size:26
Alignment explanation
Indices: 17364524--17364574 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17364514 AGTCAAATCT
17364524 TAGACTGGGAATGAACTCCGTATGCG
1 TAGACTGGGAATGAACTCCGTATGCG
* *
17364550 TAGATTGGGAATGAACTCTGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
17364575 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCG
Found at i:17365445 original size:26 final size:26
Alignment explanation
Indices: 17365416--17365468 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17365406 CCGATCCGAT
*
17365416 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17365442 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
17365468 C
1 C
17365469 CAAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17366135 original size:900 final size:898
Alignment explanation
Indices: 17363325--17371470 Score: 10191
Period size: 900 Copynumber: 9.1 Consensus size: 898
17363315 TGGCATGCAC
* * ** *
17363325 AAAAAGTGTCCCCATTTCAGTCACTTTAAAGGCTACTGGCAGCAAATGTGTAAAATCCCAAATGC
1 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* * * **
17363390 TCTTTCAGGGGGTCTGACTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
66 TCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* * * * *
17363455 CCAGCACCCATCGCACATCCTGTGTGCACACCCCCTGGCCCCCCCGATCGCCTGATCCCCAATGC
131 CCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGC
* * * * * * * * ** * *
17363520 CGCCAGTCAGATTTTCCGACGATGCTCTGGTGATTGTACCCCGGTGAAGAAAAATGTGACACCAG
196 CGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAG
* * * *
17363585 CACATGCCCGAGCCCAGCATATGCTGTTGCAACCCTCGGAT-CGGTCCGATCTTAGATTGGGAAT
261 CACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGG-TCCGATCCGATCTTAGACTGGGAAT
* * *
17363649 GAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTA
325 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
** * * * * *
17363714 CGGGCGCTCAACTAGCCAAAGGGGCAGGATGCGCAAGCCGAGGATTGGTTGGGTCCCCCTCTGCG
390 CGGGCGCTCAACCGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCG
* ** * ** *
17363779 TGCTACTGATCTTGCTGCCACAACCCTCAGTCTGGTCCAATCTTAGATTGGGAATGAACTCCGTA
455 TGCTAC-GATCCTGCTATCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTA
* ** * * * * *
17363844 TACCTAAGCCAA---ATG--ACGA-------AACGAGTGAGCACTACGCCGACC-GAAGAGATGG
519 TGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAG-AGAGACGG
* * **
17363896 GATGCGAAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTG
583 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
* * *
17363961 CCTATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTATGCCTTCACGTGCAGTTTCA
648 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * **
17364026 TGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTCAAGATTTTTTA
713 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCAAGATTTTTTA
* * *
17364091 AAATTTTTTCAGAAGGAGTTTTGGCCCCATACTTGGCAGACATGATCCTTGTATTTTTGTTGGCA
778 AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCA
* * * * *
17364156 TGCAGAAAAATACTCAACTAAAAACTCCAAGTGTACAAGATTTTGTGACCATTTGA
843 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
* * *
17364212 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCAATTGGTAGCAAACCTGTAAAATCTCAAATGC
1 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* * *
17364277 TCTTTAAGAGGGTGTGAGTTCTCGAGGTTTAATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
66 TCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* * * * * **
17364342 CCAGCACCCATTGCACATCATGTGTGCACACCCCTCAGCCCCCCCGATCACCGGAACAACAATGC
131 CCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGC
* * *
17364407 C-TCCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGTGGCACCA
196 CGT-CGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCA
* * **
17364471 GCACATGCCCGACCCCAGCATGTGCTGTCGCAACCCTTGGTCC-AGTCAAATCTTAGACTGGGAA
260 GCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGA-TCCGATCTTAGACTGGGAA
* * * * *
17364535 TGAACTCCGTATGCGTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGTGT
324 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * *
17364600 GCGGGCGCTCAACCGGCCAAAGGGGCGAGATGCGCAAGTCGGGGATC-AGTCGGGTCCCCCTCTA
389 GCGGGCGCTCAACCGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATCGA-TCGGGTCCCCCTCTG
* *
17364664 CGTGCTACCGATCCTGCTATCGCAACCCTCAGTCTGGTCTGATCTCTAGACTGGGAACGAACACC
453 CGTGCTA-CGATCCTGCTATCGCAACCCTCAGTCTGGTCTGATCT-TAGACTGGGAATGAACTCC
* * * *
17364729 GTATGCCTAAGCCAA-CGATG-AACGAGC-GACGGGCGGG-TGGCACTACACCGGCCAGAGAGAT
516 GTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGAC
* * *
17364790 GGGATGCGCAAGCCGTGAATCGATA-GGTGGTAGGT-GGTATAGGCACATCTTCAAATTTCTGCA
581 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA
* *
17364853 TGCCAATGCCATTTTTATGGCTTGTATATTCATACAAT-GTCCCTTAAGCCTTCGACGTGCAGTT
646 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC-ACGTGAAGTT
*
17364917 TCAT-GCAAGACGACTCGTTTTCTATTTTTAACGATTTTTTAAAAC-TTTTACGGTTCAAGATTT
710 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTTTAAAACTTTTTACGGTTCAAGATTT
* * * * *
17364980 TTAAAAATTTTGTCGGAAGGAGTTCTAGCCCCAAACTTGGTAGACAAGATCCTTGTATTTTTGTT
774 TTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTT
17365045 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
839 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
* * * * *
17365105 AAATAGTGTCCCCATTTCAGACACTTTAACGGCAATTGGTAGCAAACCTGTAAAATCTCAAATGC
1 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* * * **
17365170 TCTTTAAGAGGATGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGACCAATATAAGGTTCAAGTA
66 TCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* * * *
17365235 CCAGCACCCATTGCACATCAGGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGAAACCTCAATG
131 CCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATG
* * * * *
17365300 CC-TCCGGTCAGGTTCTCTGACGATGCTCCGACGATGGTGCCTCGAAGAAGAAAAATGCGACACC
195 CCGT-CGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACC
* * *
17365364 AGCACATGCTCGAGCCTAGCATGTGC-GATCGCAACCCTCAGTCCGATCCGATCTTAGACTGGGA
259 AGCACATGCCCGAGCCCAGCATGTGCTG-TCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGA
* *
17365428 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCAAAGTCAACCCACGAAACGAGCG
323 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
*
17365493 TGCGGGCGCTCAGCCGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTG
388 TGCGGGCGCTCAACCGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTG
* * * * *
17365558 TGTGCTATCGATCCTGCTACCGTAACCCTCAGTCTGGTCTGATCTTAGACTAGGAATGAACTCTG
453 CGTGCTA-CGATCCTGCTATCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCG
* *
17365623 TATGCCTAAGCCAACCGATGAAACAAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGATG
517 TATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACG
*
17365688 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCAT
582 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAT
* *
17365753 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGGCTTCACGTGTAGTTTC
647 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* * * *
17365818 ATGGCTAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTCTGCGGTTCAAGATTTTTT
712 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCAAGATTTTTT
* * *
17365883 AAAATTTTTTCGGAAGGATTTTTGGCCCCATACTTGGTAGACATGATCCTTGTATTTTTGTTCGC
777 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGC
*
17365948 TTGCA-AAAAAATATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
842 ATGCACAAAAAA-ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
* *
17366005 AAAAAGTGTCCCCATTTCAGAAACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATTC
1 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* *
17366070 TCTTTAAGGGGGTGTGAGTTCCCAAGGTTTGATGAGGGATAGGGGGCCAGTATAAGGGCCAAGTA
66 TCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
*
17366135 CCAGCACCCATCGCACATCATGTGCGCACACCCCCCCAGCCCCCCCGATCGCCGGAACCCCAATG
131 CCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATG
* * * *
17366200 CCGTCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCCGGCGAAGAAAAATGTGGCACCA
195 CCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCA
* * *
17366265 GCACATGCCCGACCCCAGCATGTGCTGTCGCAACCCTTGGTCC-AGTCAGATCTTAGACTGGGAA
260 GCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGA-TCCGATCTTAGACTGGGAA
* * * * **
17366329 TGAACTCCGTATGCTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACAAATGT
324 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* *
17366394 GCGGGCGCTCAACCAGCCAAAGGGGCGAGATGCGCAAGCCGGGGATC-AGTCGGGTCCCCCTCTG
389 GCGGGCGCTCAACCGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATCGA-TCGGGTCCCCCTCTG
* *
17366458 TGTGCTACTGATCCTGCTATCGCAACCCTTAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCG
453 CGTGCTAC-GATCCTGCTATCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCG
* * * * *
17366523 TATGCCTAAGCGAACCGATGAAACGAGCGGACGGGCGGGTGGGCATTACGCCGGCCAGAGAGATG
517 TATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACG
* * * * *
17366588 GGATGCGCAAGCCGTGAATCGATGGGGTGGTAGGTGGGTATAGGCACATCTTCAAATTTCTGCAC
582 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAT
* * * *
17366653 GCCAATGCCATTTTTATGGCTTGTATATTCGTACAATGGTCCCTTGAGCCTTCACGTGCAGTTTC
647 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* *
17366718 ATGGCAAGACGACTCGTTTTCTATTTTTAACGATTTTTTAAAC-TTTTACGGTTCAAGATTTTTT
712 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCAAGATTTTTT
* * *
17366782 AAAATTTTGTCGGAAGGAGTTCTGGCCCCAAACTTGGTAGACAAGATCCTTGTATTTTTGTTGGC
777 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGC
17366847 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
842 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
* * * *
17366904 AAATAGTGTCCCCATTTCAGACACTTTAATGGCAATTGGTAGCAAACCTGTAAAATCTCAAATGC
1 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* *
17366969 TCTTTAAGGGGGTGTGAGTTCCCAAGGTTTGATGAGGGATAGGGGGCCAGTATAAGGGCCAAGTA
66 TCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
*
17367034 CCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCTCGATCGCCGGAACCCCAATGC
131 CCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGC
* *
17367099 CGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAG
196 CGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAG
* * * * *
17367164 CACATGCCCGAGCCAAGCATGTGCTGCCGCAACCCTCGATCTGGTCCGATCTTAGACTGGGAATG
261 CACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATG
* * * * * * * * *
17367229 AACTTCGTATGCTTCGACTAGGAATGACCTCCGTGTGCCTAAGTCAACCAACAAAATGAGCGTAC
326 AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* * * * * * * *
17367294 GGGCGCTCAACCGACCAGAGGGG-GGGATGCACAAGCTGAGGATCGATCGGGTCACCCTTTGCTT
391 GGGCGCTCAACCGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGT
* * * * *
17367358 GCTGCCGATCTTACTATCACAACCCTCAGTCTGGTCTGA-CTTTAGACTGGGAATGAACTCCATA
456 GCT-ACGATCCTGCTATCGCAACCCTCAGTCTGGTCTGATC-TTAGACTGGGAATGAACTCCGTA
* * * * **
17367422 TGCCTAAGCCAACCGACGAAACGA--------GCAGGCGGGCACTAAGCCGTCCTTAGAGACGGG
519 TGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGG
** *
17367479 ATGCGCAAGCCGTGGATCGATACTGTGGTAGGTGGGTTTAGGCACATCTTCATATTCCTGCATGC
584 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGC
*
17367544 CAATGCCATTTTTATGGCTTGCAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
649 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* * * * * * *
17367609 CGCAAGACGACTCATTTTTTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTA
714 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCAAGATTTTTTAA
** * *
17367674 AATTTTTTCGGAAGGAGTTTTTTCCCCAAACTTGGTAGACTTGATCCTTGTATTTTTATTGGCAT
779 AATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCAT
* * *
17367739 GCACAAAAAAACTCAACCAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
844 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
* *
17367794 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGAAAACCTGTAAAATCTCAAATCC
1 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* *
17367859 TCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGTCCAACATAAGGGCCAAGTA
66 TCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
*
17367924 CCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATG
131 CCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATG
* * * * * * **
17367989 CCGCCGATCAGGTTCTCCGACGATGCTCCAGCGA---TGCTCCGACGATG----GTGCCCCGACG
195 CCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGC-AC-
* * * * *
17368047 AAGAAAAAT--TCG-GCACCAGCATGTGCTATCGCAA-CC-C--T-CG----G-TC-----C---
258 CAG-CACATGCCCGAGC-CCAGCATGTGCTGTCGCAACCCTCGGTCCGATCCGATCTTAGACTGG
*
17368091 G---G---TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGGAACGAG
321 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * * * * * * *
17368148 CGTACGGGCACTCAACCGGCCAGAGGGGCAGGATGCGCAAGTCGGGGATCGACCGGTTCACCCTC
386 CGTGCGGGCGCTCAACCGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTC
* * * * * * * *
17368213 TGTGTGCTACCGATCTTGCTGTAGCAACCCTCGGTCCGGTCCGATCATAGACTGGGAATGAACTC
451 TGCGTGCTA-CGATCCTGCTATCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTC
** * * * *
17368278 AATATGCCTAAGCCAACTGACGAAACGAGTGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGA
515 CGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGA
* * *
17368343 CGAGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCGGC
580 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
*
17368408 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTGACGTGAAGTT
645 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* * * *
17368473 TCATCGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGA-TTT
710 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCAAGATTTT
* ** * *
17368537 TTAAAATTTTTT-TG--GGAGTTTTGGCCCCAAACTTATTAGACGTGATCCTTGTATTTTTTTTG
775 TTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTG
* * * *
17368599 GCATGCAC-AAAAATTTCAGCCAAAAACTCAAAGTGTACAAGATTTTGAGACCATTTGA
840 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
*
17368657 AAAAAGTGT-CCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
1 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* *
17368721 TCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGACGAGAGATAGGGGGCCAATATAAGGGCCAAGTA
66 TCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
*
17368786 CCAGCACCCATTGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATG
131 CCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATG
* * * *
17368851 CCATCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCTCC-AGCGAAGAAAAATGTGGCACC
195 CCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGA-CGAAGAAAAATGCGGCACC
* * * * *
17368915 AGCACATG-CCGAGCCCAGCATGTGCT-ACTGCAACCCTCTGTCTGGTCTGATCTTAGACTGGGA
259 AGCACATGCCCGAGCCCAGCATGTGCTGTC-GCAACCCTCGGTCCGATCCGATCTTAGACTGGGA
*
17368978 ATGAACTCCGTATGCTTAGA-TGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAACGAGCG
323 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * * * * * * *
17369042 TGCGGGCGCTTAGCCAGCCAGAGAGGTGGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTG
388 TGCGGGCGCTCAACCGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTG
* *** * *
17369107 CATGC--C-A-CC-G---T---AACCCTCAGTCCAATCTAATCTTACACTGGGAATGAACTCCGT
453 CGTGCTACGATCCTGCTATCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGT
** ** * *
17369161 ATGCCTAAGCCAACCGACAAAACGAG-GGAATGGGCAGGTGGGCACTACGCCGGCCAGAGAGACG
518 ATGCCTAAGCCAACCGATGAAACGAGCGG-GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACG
* * * * ***
17369225 AGATGCACAAGTCGTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCTATGT
582 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAT
17369290 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
647 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* * *** * **
17369355 ATCGCAAGACGACTTGTTTTCTATTTTTGGTGATTTTCAAAACTTTTTACGGTTCGTGATTTTTT
712 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCAAGATTTTTT
* * * *
17369420 AAATTTTTTTTGGAA-GACGTTTTGGCCCCAAATTTGGTAGACATGATCCTTGTATTTTTGTTGT
777 AAAATTTTTTCGGAAGGA-GTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGG
* * * *
17369484 CATGCATAAAAAAATTCAACTAAAAGCTCGAAGTGTACAAGATTTTGTGACCATCTGA
841 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
* **
17369542 AAAAAGTGTCCCCATTTTAGACACTTTAATGAATACTGGCAGCAAACCTGTAAAATCTCAAATGC
1 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
**
17369607 TCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
66 TCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* * * * * * *
17369672 CCCGTACCCATCGCACATCATGTGCGCATACCCCCTGGGCCCCCCGATCACCGGAACACCAATGC
131 CCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGC
* * * *
17369737 CGTCGATCAGGTTCT-C--CGA---T-----GATGGTGCCCGGGCAAAGAAAAATGCGGCACCAG
196 CGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAG
* * * **
17369791 CACATG--GGTATGCCTAGCATGTGCTGCCATAACTCTCGGTCGGGTCCGATCTTAGACTGGGAA
261 CACATGCCCG-A-GCCCAGCATGTGCTGTCGCAAC-C-C--TC--G---G-TC-----C---G-A
* * * *
17369854 TGAACTTCGTATGCTTAGACTGGAAATGAACTCCGTATGCTTAGACTAGGAATGAACTCTGAATG
305 T---C--CG-AT-CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
*** *
17369919 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTTGGCCAGAGGGGCGGGATGCGCAAGC
363 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAAAGGGGCGGGATGCGCAAGC
* * ** *
17369984 CAGGGATC-AGCCGGGTCCCCCTCTGCGTGCTGTTGATCCTGCTGTCGCAACCCTCCA-TCTGGT
428 CGGGGATCGA-TCGGGTCCCCCTCTGCGTGCT-ACGATCCTGCTATCGCAACCCT-CAGTCTGGT
* * * *
17370047 CTGATCATAGACTGGGAATGAACTCCATATGCCGAAGCGAACCGATGAAACGAGCGGGCGGGCGG
490 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGC--
* *
17370112 GTGGGCGGGCACTACGCCGGCCAGAGAGACGCGATGCTCAAGCCGTGGATCGATAGGGTGGTAGG
553 --GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * * * ***
17370177 TGGGTCTAGGCAAACCTTCATATATCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
616 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * * * *
17370242 AATGGTCCCTTAAGCTTTCACGTGAAGTTTCCTGGCAACATGACTCGTTTTCTATTTTTCATGAT
681 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * * * * *
17370307 TTTCAAAACATTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGATGGAGTTTTAGCCCCAAACT
746 TTTTAAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
* ** * * *
17370372 TGGTAGACATGATCATTGTATTTTTGTTGTTATGCATAAAAAAATTCAGCTAAAAACTCAAATTG
811 TGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
*
17370437 TAGAAGATTTTGTGACCATTTGA
876 TACAAGATTTTGTGACCATTTGA
* * * *
17370460 AAAAAGTGTCCCCATTCCAGACACTTTAATGGCCACTAGCAGCAAACCTGTGAAATCTCAAATGC
1 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* * *
17370525 TCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTA
66 TCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* * * * * *
17370590 CCAGCACCCATCGCACATGATGTGC-CACACCCCCTGGCCCCCTCGATCACAGGAACCCCAACGC
131 CCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGC
* * * * * *
17370654 CGTCGGTCAGGTTCTCCGGCGATGCTCCGGCAATGGTGCCTCGGCGAAGAGAAATGCAGCACCAG
196 CGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAG
* * * * *
17370719 CACATGCCCGAGCCCAACATGTGCTGCCGCAACCCTCGGTCC-ATTCTGATCTTTGACTAGGAAT
261 CACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGA-TCCGATCTTAGACTGGGAAT
** *
17370783 GAACTCCACATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTA
325 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT-
* * * * *
17370848 CGGCGTACGGGCGCTCAACCGGCCAAAGGGGCAGGATGCGCCAGCCGAGGATCGGTTGGGTCCCC
389 ----G--CGGGCGCTCAACCGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCC
* * * *
17370913 CTCTGCGTGCTACTGATCCTACTA-CTGCAACCCTCGGTCTGATCTAATCTTAGACTGGGAATGA
448 CTCTGCGTGCTAC-GATCCTGCTATC-GCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGA
* * * *
17370977 ACTCCGTATACCTACA-CCAACCGACGAAACGAACAGGCGGGCGGGCAGGCGGGCACTACGTCGG
511 ACTCCGTATGCCTA-AGCCAACCGATGAAACG---A-GCGGGCGGGCGGGCGGGCACTACGCCGG
* * *
17371041 ACAGAGAGACGGGATGCGCAAGCTC-TCGATCGATTGGGTGGTAGGTGGGTTTAGGCACATCTTC
571 CCAGAGAGACGGGATGCGCAAGC-CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
17371105 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
635 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
17371170 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGT
700 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGT
* *
17371235 TCGAGATTTTTTAAAATTTTTTTGGAA-GATGTTTTGGCCCCAAACTTGGTAGACATGATCCTTG
765 TCAAGATTTTTTAAAATTTTTTCGGAAGGA-GTTTTGGCCCCAAACTTGGTAGACATGATCCTTG
* * *
17371299 TATTTTTGTTGTCATGGACAAAAAAATTCAGCTAAAAGCTCGAAGTGTACAAGATTTTGTGACCA
829 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
17371364 TTTGA
894 TTTGA
* ** * *
17371369 AAAAAGTGTCCCCATTTTAGACACTTTAATGAATACTGGCAGCAAGCTTGTAAAATCTCAAATGC
1 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* *
17371434 TCTCTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
66 TCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGG
17371471 AATGCCTAAG
Statistics
Matches: 6333, Mismatches: 739, Indels: 352
0.85 0.10 0.05
Matches are distributed among these distances:
859 67 0.01
860 107 0.02
861 4 0.00
862 205 0.03
863 54 0.01
864 52 0.01
865 10 0.00
866 5 0.00
867 35 0.01
868 208 0.03
869 4 0.00
870 1 0.00
871 1 0.00
872 1 0.00
873 1 0.00
874 35 0.01
875 18 0.00
876 4 0.00
877 3 0.00
879 5 0.00
880 262 0.04
881 15 0.00
882 5 0.00
883 4 0.00
884 56 0.01
885 119 0.02
886 144 0.02
887 429 0.07
888 43 0.01
889 178 0.03
890 284 0.04
891 70 0.01
892 98 0.02
893 358 0.06
894 384 0.06
895 18 0.00
896 51 0.01
897 158 0.02
898 234 0.04
899 375 0.06
900 852 0.13
901 33 0.01
902 167 0.03
903 2 0.00
904 1 0.00
906 2 0.00
907 3 0.00
908 6 0.00
909 518 0.08
910 2 0.00
911 1 0.00
912 1 0.00
913 11 0.00
914 59 0.01
915 4 0.00
917 47 0.01
918 453 0.07
919 3 0.00
920 3 0.00
922 1 0.00
923 1 0.00
924 2 0.00
926 1 0.00
927 1 0.00
928 52 0.01
929 1 0.00
930 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (898 bp):
AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
TCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
CCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGC
CGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAG
CACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATG
AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
GGGCGCTCAACCGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGT
GCTACGATCCTGCTATCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
CCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAT
GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
CAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCAAGATTTTTTAAAA
TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGC
ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
Found at i:17366352 original size:26 final size:26
Alignment explanation
Indices: 17366316--17366368 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17366306 CCAGTCAGAT
17366316 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
17366342 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17366368 C
1 C
17366369 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17368034 original size:11 final size:11
Alignment explanation
Indices: 17368003--17368035 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
17367993 CGATCAGGTT
17368003 CTCCGACGATG
1 CTCCGACGATG
17368014 CTCC-AGCGATG
1 CTCCGA-CGATG
17368025 CTCCGACGATG
1 CTCCGACGATG
17368036 GTGCCCCGAC
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
10 1 0.05
11 18 0.90
12 1 0.05
ACGTcount: A:0.18, C:0.36, G:0.27, T:0.18
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:17369003 original size:25 final size:26
Alignment explanation
Indices: 17368966--17369017 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
17368956 CTGGTCTGAT
17368966 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17368992 CTTAGA-TGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17369017 C
1 C
17369018 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 20 0.77
26 6 0.23
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17369881 original size:26 final size:25
Alignment explanation
Indices: 17369841--17369912 Score: 108
Period size: 26 Copynumber: 2.8 Consensus size: 25
17369831 CGGGTCCGAT
*
17369841 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACT-GGAATGAACTCCGTATG
17369867 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGG-AATGAACTCCGTATG
17369893 CTTAGACTAGGAATGAACTC
1 CTTAGACT-GGAATGAACTC
17369913 TGAATGCCTA
Statistics
Matches: 43, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
25 2 0.05
26 39 0.91
27 2 0.05
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.28
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Found at i:17371245 original size:909 final size:896
Alignment explanation
Indices: 17368099--17371470 Score: 4207
Period size: 909 Copynumber: 3.7 Consensus size: 896
17368089 CCGGTCCGAT
* * *
17368099 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGGAACGAGCGTACGGGCACTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
* * * * * * * *
17368164 CGGCCAGAGGGGCAGGATGCGCAAGTCGGGGATCGACCGGTTCACCCTCTGTGTGCTACCGATCT
66 CGGCCAGAGGGGCAGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTACTGATCC
* * * ** *
17368229 TGCTGTAGCAACCCTCGGTCCGGTCCGATCATAGACTGGGAATGAACTCAATATGCCTAAGCCAA
131 TACTCTAGCAACCCTCGGTCCGATCTAATCATAGACTGGGAATGAACTCCATATGCCTAAGCCAA
* * * * *
17368294 CTGACGAAACGA-GTGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGAGATGTGCAAGCC
196 CCGACGAAACGAGGCGGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCC
**
17368358 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCGGCATGCCAATGCCATTT
261 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTT
*
17368423 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTGACGTGAAGTTTCATCGCAAGACGAC
326 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATCGCAAGACGAC
**
17368488 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGA-TTTTTAAAATTTTTTTGG
391 TCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTTGG
** * * * * *
17368552 --GA-GTTTTGGCCCCAAACTTATTAGACGTGATCCTTGTATTTTTTTTGGCATGCA-CAAAAAT
456 AAGACGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGTCATGCATAAAAAAA
* *
17368613 TTCAGCCAAAAACTCAAAGTGTACAAGATTTTGAGACCATTTGAAAAAAGTGT-CCCATTTTAGA
521 TTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGA
**
17368677 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
586 CACTTTAATGAATACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * * *
17368742 TCAAGGTTTGACGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCAT
651 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * *
17368807 GTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCATCGGTCAGGTTCTCCGAC
716 GTGCGCACA-CCCCCTGG-CCCCCCGATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG-C
* * *
17368872 GATGCTCCGACGATGGTG-CTCCAGCGAAGAAAAATGTGGCACCAGCACATGCCGAGCCCAGCAT
778 GATGCTCCGGC-ATGGTGCCT-CGGCGAAGAAAAATGCGGCACCAGCACATGCCGAGCCCAGCAT
* * * *** *
17368936 GTGCTACTGCAACCCTCTGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
841 GTGCTGCCGCAACCCTCGGTCCATTCTGATCTTAGACTAGGAATGAACTCCGTATG
* * *
17368992 CTTAGA-TGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAACGAGCGTGCGGGCGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
* * ** * * *
17369056 CAGCCAGAGAGGTGGGATGCGCAAGCTGGGGATCGGTCGGGT-CCCC-CT-C-TGC-A-TG--CC
66 CGGCCAGAGGGGCAGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTACTGATCC
* * * * * *
17369113 -AC-C--GTAACCCTCAGTCCAATCTAATCTTACACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TACTCTAGCAACCCTCGGTCCGATCTAATCATAGACTGGGAATGAACTCCATATGCCTAAGCCAA
* *** * * *
17369174 CCGACAAAACGAGG-GAATGGGCAGGTGGGCACTACGCCGGCCAGAGAGACGAGATGCACAAGTC
196 CCGACGAAACGAGGCGGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCC
* **
17369238 GTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTT
261 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTT
17369303 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATCGCAAGACGAC
326 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATCGCAAGACGAC
* ** *
17369368 TTGTTTTCTATTTTTGGTGATTTTCAAAACTTTTTACGGTTC-GTGATTTTTTAAATTTTTTTTG
391 TCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCAG-GATTTTTTAAAATTTTTTTG
*
17369432 GAAGACGTTTTGGCCCCAAATTTGGTAGACATGATCCTTGTATTTTTGTTGTCATGCATAAAAAA
455 GAAGACGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGTCATGCATAAAAAA
* * * *
17369497 ATTCAACTAAAAGCTCGAAGTGTACAAGATTTTGTGACCATCTGAAAAAAGTGTCCCCATTTTAG
520 ATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAG
17369562 ACACTTTAATGAATACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
585 ACACTTTAATGAATACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * *
17369627 CTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCCGTACCCATCGCACATCA
650 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * *
17369692 TGTGCGCATACCCCCTGGGCCCCCCGATCACCGGAACACCAATGCCGTCGATCAGGTTCT-C-CG
715 TGTGCGCACACCCCCT-GGCCCCCCGATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGCG
* * *
17369755 A---T---G-ATGGTGCC-CGGGCAAAGAAAAATGCGGCACCAGCACATG-GGTATGCCTAGCAT
779 ATGCTCCGGCATGGTGCCTC-GGCGAAGAAAAATGCGGCACCAGCACATGCCG-A-GCCCAGCAT
** *
17369811 GTGCTGCCATAACTCTCGGTCGGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTG
841 GTGCTGCCGCAAC-C-C--TC-GGTCC-A--TT---CT--G-AT---CTTAG-A--C-T--A--G
17369876 GAAATGAACTCCGTATG
881 G-AATGAACTCCGTATG
* * * **
17369893 CTTAGACTAGGAATGAACTCTGAATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
* * * **
17369958 TGGCCAGAGGGGCGGGATGCGCAAGCC-AGGGATCAGCCGGGTCCCCCTCTGCGTGCTGTTGATC
66 CGGCCAGAGGGGCAGGATGCGCAAGCCGA-GGATCGGCCGGGTCCCCCTCTGCGTGCTACTGATC
* * * ** * * * * *
17370022 CTGCTGTCGCAACCCTCCATCTGGTCTGATCATAGACTGGGAATGAACTCCATATGCCGAAGCGA
130 CTACTCTAGCAACCCTCGGTCCGATCTAATCATAGACTGGGAATGAACTCCATATGCCTAAGCCA
* ** * *
17370087 ACCGATGAAACGAGCGGGCGGGCGGGTGGGCGGGCACTACGCCGGCCAGAGAGACGCGATGCTCA
195 ACCGACGAAACGA---GGCGGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGAGATGCGCA
* * * * **
17370152 AGCCGTGGATCGATAGGGTGGTAGGTGGGTCTAGGCAAACCTTCATATATCTATGTGCCAATGCC
257 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
* * * *
17370217 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCTTTCACGTGAAGTTTCCTGGCAACA
322 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATCGCAAGA
* * *
17370282 TGACTCGTTTTCTATTTTTCATGATTTTCAAAACATTTTGCGGTTCAGGATTTTTTAAAATTTTT
387 CGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTT
* * * * *
17370347 TCGGATGGA-GTTTTAGCCCCAAACTTGGTAGACATGATCATTGTATTTTTGTTGTTATGCATAA
452 TTGGA-AGACGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGTCATGCATAA
* *
17370411 AAAAATTCAGCTAAAAACTCAAATTGTAGAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
516 AAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
** *** * * *
17370476 CCAGACACTTTAATGGCCACTAGCAGCAAACCTGTGAAATCTCAAATGCTCTTTAAGGAGGTGTG
581 TTAGACACTTTAATGAATACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
17370541 AGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
646 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * *
17370606 ATGATGTGC-CACACCCCCTGGCCCCCTCGATCACAGGAACCCCAACGCCGTCGGTCAGGTTCTC
711 ATCATGTGCGCACACCCCCTGGCCCCC-CGATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTC
* *
17370670 CGGCGATGCTCCGGCAATGGTGCCTCGGCGAAGAGAAATGCAGCACCAGCACATGCCCGAGCCCA
775 C-GCGATGCTCCGGC-ATGGTGCCTCGGCGAAGAAAAATGCGGCACCAGCACATG-CCGAGCCCA
* * **
17370735 ACATGTGCTGCCGCAACCCTCGGTCCATTCTGATCTTTGACTAGGAATGAACTCCACATG
837 GCATGTGCTGCCGCAACCCTCGGTCCATTCTGATCTTAGACTAGGAATGAACTCCGTATG
*
17370795 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGCGTACGGGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT-----G--CGGGC
* * **
17370860 GCTCAACCGGCCAAAGGGGCAGGATGCGCCAGCCGAGGATCGGTTGGGTCCCCCTCTGCGTGCTA
59 GCTCAACCGGCCAGAGGGGCAGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTA
* * * *
17370925 CTGATCCTACTACT-GCAACCCTCGGTCTGATCTAATCTTAGACTGGGAATGAACTCCGTATACC
124 CTGATCCTACT-CTAGCAACCCTCGGTCCGATCTAATCATAGACTGGGAATGAACTCCATATGCC
* * *
17370989 TACA-CCAACCGACGAAACGAACAGGCGGGCGGGCAGGCGGGCACTACGTCGGACAGAGAGACGG
188 TA-AGCCAACCGACGAAACG---AGGCGGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGA
* * *
17371053 GATGCGCAAGCTC-TCGATCGATTGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAT
249 GATGCGCAAGC-CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACAT
17371117 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
313 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* * *
17371182 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTC-GAGATTTTT
378 ATCGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCAG-GATTTTT
*
17371246 TAAAATTTTTTTGGAAGATGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGT
442 TAAAATTTTTTTGGAAGACGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGT
* * * *
17371311 CATGGACAAAAAAATTCAGCTAAAAGCTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
507 CATGCATAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
* * *
17371376 GTCCCCATTTTAGACACTTTAATGAATACTGGCAGCAAGCTTGTAAAATCTCAAATGCTCTCTAA
572 GTCCCCATTTTAGACACTTTAATGAATACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
17371441 GGGGGTGTGAGTTCTCGAGGTTTGATGAGG
637 GGGGGTGTGAGTTCTCGAGGTTTGATGAGG
17371471 AATGCCTAAG
Statistics
Matches: 2120, Mismatches: 269, Indels: 164
0.83 0.11 0.06
Matches are distributed among these distances:
873 2 0.00
874 33 0.02
875 18 0.01
876 1 0.00
877 1 0.00
879 4 0.00
880 265 0.12
881 18 0.01
882 3 0.00
883 4 0.00
884 48 0.02
885 94 0.04
886 145 0.07
887 1 0.00
888 4 0.00
889 2 0.00
890 2 0.00
891 3 0.00
892 89 0.04
893 7 0.00
895 1 0.00
896 1 0.00
900 2 0.00
901 21 0.01
902 146 0.07
903 6 0.00
904 2 0.00
905 2 0.00
906 3 0.00
907 2 0.00
908 6 0.00
909 530 0.25
910 7 0.00
911 5 0.00
912 1 0.00
914 58 0.03
915 1 0.00
916 7 0.00
917 45 0.02
918 455 0.21
919 3 0.00
920 5 0.00
922 1 0.00
923 6 0.00
924 2 0.00
926 2 0.00
927 1 0.00
928 52 0.02
929 2 0.00
930 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (896 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAAC
CGGCCAGAGGGGCAGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTACTGATCC
TACTCTAGCAACCCTCGGTCCGATCTAATCATAGACTGGGAATGAACTCCATATGCCTAAGCCAA
CCGACGAAACGAGGCGGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCC
GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTT
TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATCGCAAGACGAC
TCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTTGG
AAGACGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGTCATGCATAAAAAAA
TTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGA
CACTTTAATGAATACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
GTGCGCACACCCCCTGGCCCCCCGATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGCGAT
GCTCCGGCATGGTGCCTCGGCGAAGAAAAATGCGGCACCAGCACATGCCGAGCCCAGCATGTGCT
GCCGCAACCCTCGGTCCATTCTGATCTTAGACTAGGAATGAACTCCGTATG
Found at i:17372097 original size:647 final size:649
Alignment explanation
Indices: 17370818--17372117 Score: 1876
Period size: 647 Copynumber: 2.0 Consensus size: 649
17370808 TGAACTCCGT
17370818 ATGCCTAAGTCAACCCACGAAACGAGCGTACGGCGTACGGGCGCTCAACCGGCCAAAGGGGCAGG
1 ATGCCTAAGTCAACCCACGAAACGAGCGT----CGTA-GGGCGCTCAACCGGCCAAAGGGGCAGG
* * *
17370883 ATGCGCCAGCCGAGGATCGGTTGGGTCCCCCTCTGCGTGCTACTGATCCTACTACTGCAACCCTC
61 ATGCGCAAGCCGAGGATCGGTCGAGTCCCCCTCTGCGTGCTACTGATCCTACTACTGCAACCCTC
** ** * *
17370948 GGTCTGATCTAATCTTAGACTGGGAATGAACTCCGTATACCTACACCAACCGACGAAACGAACAG
126 CATCTGATCTAATAATAGACTGGGAATGAACTCCGTATACCGACACAAACCGACGAAACGAACAG
* *
17371013 GCGGGCGGGCAGGCGGGCACTACGTCGGACAGAGAGACGGGATGCGCAAGCTCTCGATCGATTGG
191 GCGGGCGGGCAGGCGGGCACTACGCCGGACAGAGAGACGGGATGCGCAAGCTCTCGATCGATAGG
* * * *
17371078 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
256 GTGGTAGGTGGGTTTAGGCAAACCTTCATATATCTACATGCCAATGCCATTTTTATGGCTTGTAA
*
17371143 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
321 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAACACGACTCGTTTTCTATTT
* * * *
17371208 TTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGATGTTTTGGC
386 TTCACGATTTTCAAAACATTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGATGTTTTAGC
* * * *
17371273 CCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGTCATGGACAAAAAAATTCAGCTAAAAGC
451 CCCAAACTTGGTAGACATGATCATTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
* *
17371338 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGAAT
516 TCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCTAGACACTTTAATGAAT
* * * *
17371403 ACTGGCAGCAAGCTTGTAAAATCTCAAATGCTCTCTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
581 ACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTCTAAGGAGGTGTGAGTTCTCGAGGTTTGATG
17371468 AGGA
646 AGGA
*** * *
17371472 ATGCCTAAGTCAACCCACGAAACGAGCGT-GT-GGGCGCTCAGTTGGCCAGAGGGGCGGGATGCG
1 ATGCCTAAGTCAACCCACGAAACGAGCGTCGTAGGGCGCTCAACCGGCCAAAGGGGCAGGATGCG
* * * *
17371535 CAAGCCGGGGATCGGTCGAGTCCCCCTCTGCGTGCTGCTGATCCTGCT-GTCGCAACCCTCCATC
66 CAAGCCGAGGATCGGTCGAGTCCCCCTCTGCGTGCTACTGATCCTACTACT-GCAACCCTCCATC
* * * * * *
17371599 TGGTCTGATAATAGACTGGGAATGAACTCCGTATGCCGA-AGCAAATCGACGAAACGAGCGGGCG
130 TGATCTAATAATAGACTGGGAATGAACTCCGTATACCGACA-CAAACCGACGAAACGAACAGGCG
* ** * * *
17371663 GGTGGGTGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCTCAAGC-CGTGGATCGATAGGGT
194 GGCGGGCAGGCGGGCACTACGCCGGACAGAGAGACGGGATGCGCAAGCTC-TCGATCGATAGGGT
**
17371727 GGTAGGTGGGTTTAGGCAAACCTTCATATATCTATGTGCCAATGCCATTTTTATGGCTTGTAAAT
258 GGTAGGTGGGTTTAGGCAAACCTTCATATATCTACATGCCAATGCCATTTTTATGGCTTGTAAAT
* * *
17371792 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCCTTGCAACATGACTCGTTTTCTATTTTT
323 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAACACGACTCGTTTTCTATTTTT
* * *
17371857 CATGATTTTCAAAACATTTTGCGGTTC-AGGATTTTTTAAAATTTTTTCGGATGGA-GTTTTAGC
388 CACGATTTTCAAAACATTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGGA-AGATGTTTTAGC
*
17371920 CCCAAACTTGGTAGACGTGATCATTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
451 CCCAAACTTGGTAGACATGATCATTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
* * **
17371985 TCAAATTGTAGAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCTAGACACTTTAATGGCT
516 TCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCTAGACACTTTAATGAAT
*
17372050 ACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATG
581 ACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTCTAAGGAGGTGTGAGTTCTCGAGGTTTGATG
17372115 AGG
646 AGG
17372118 GATAGGGGGC
Statistics
Matches: 576, Mismatches: 65, Indels: 17
0.88 0.10 0.03
Matches are distributed among these distances:
646 4 0.01
647 539 0.94
648 2 0.00
649 2 0.00
654 29 0.05
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (649 bp):
ATGCCTAAGTCAACCCACGAAACGAGCGTCGTAGGGCGCTCAACCGGCCAAAGGGGCAGGATGCG
CAAGCCGAGGATCGGTCGAGTCCCCCTCTGCGTGCTACTGATCCTACTACTGCAACCCTCCATCT
GATCTAATAATAGACTGGGAATGAACTCCGTATACCGACACAAACCGACGAAACGAACAGGCGGG
CGGGCAGGCGGGCACTACGCCGGACAGAGAGACGGGATGCGCAAGCTCTCGATCGATAGGGTGGT
AGGTGGGTTTAGGCAAACCTTCATATATCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCA
TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAACACGACTCGTTTTCTATTTTTCAC
GATTTTCAAAACATTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGATGTTTTAGCCCCAA
ACTTGGTAGACATGATCATTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAA
GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCTAGACACTTTAATGAATACTAG
CAGCAAACCTGTAAAATCTCAAATGCTCTCTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGA
Found at i:17374809 original size:26 final size:26
Alignment explanation
Indices: 17374780--17374858 Score: 113
Period size: 26 Copynumber: 3.0 Consensus size: 26
17374770 CCGGTCCGAT
*
17374780 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
17374806 CTTAGACTGGAAATCAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17374832 CTTAGACTGGGAATGAACTCCGAATG
1 CTTAGACTGGGAATGAACTCCGTATG
17374858 C
1 C
17374859 CTAAGTCAAC
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17375738 original size:26 final size:26
Alignment explanation
Indices: 17375708--17375760 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17375698 CCATTCCGAT
17375708 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
17375734 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
17375760 C
1 C
17375761 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:17376128 original size:902 final size:900
Alignment explanation
Indices: 17373027--17378226 Score: 6329
Period size: 902 Copynumber: 5.8 Consensus size: 900
17373017 TTGATGAGGA
** * ** * *
17373027 ATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCACTCAGTTGGCCAGAGGGGCGGAATGCGCA
1 ATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAAAGGGGCGGGATGCGCA
* * * * * * * **
17373092 AGCTGGGGATCG-GTCGGGTCCCCCTCTGCGTGCTGCTGATCCTGCT-GTCGCAACCCTCCATCT
66 AGCCGAGGATCGACT-GGGTCCCCCTCTGCGTGCTACTGATCCTACTACT-ACAACCCTCGGTCT
* * * * * *
17373155 GGTCTGATCATAGACTGGGAATGAACTCCGTATGCCG-A-AGCGAACCGACGAAACGAGCGGGCG
129 GATCTAATCTTAGACTGGGAATGAACTCCGTAT-ACGTACA-CCAACCGATGAAACGAGCGGGCG
* * * *
17373218 GGCGGGTGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCTCAAGCCGTAGATCGATAGGGTG
192 GGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATTGGGTG
* * **
17373283 GTAGGTGGGTTTAGGCAAACCTTCATATATCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATT
257 GTAGGTGGGTTTAGGCACATCTTCATATATCTGCATGCCAATGCCATTTTTATGGCTTGTAAATT
* * *
17373348 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCCTGGCAACATGACTCGTTTTCTATTTTTC
322 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
** ** * * *
17373413 ATAATTTTCAAAACATTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGATGGAGTTTTAGCCCC
387 ACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC
* *
17373478 AAACTTGGTAGACGTGATCATTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAACTCA
452 AAACTTGGTAGACGTGATCATTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* * *
17373543 AATTGTAGAAGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTCCAGACACTTTAATGGCTACT
517 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAGACACTTTAATGGCTACT
17373608 AGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGG
582 AGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGG
* *
17373673 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATGATGTGCCACACCACCCAG
647 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATGATGTGCCACACCCCCCGG
*
17373738 CCCCCTCGATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCAATGGTG
712 CCCCC-CGATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCC-GCGATGGTG
17373803 CCTCGGCGAAGAGAAATGCGGCACCAGCACATGCCCGAGCCCAACATGTGCTGCCGCAACCCTCG
775 CCTCGGCGAAGAGAAATGCGGCACCAGCACATGCCCGAGCCCAACATGTGCTGCCGCAACCCTCG
* * *
17373868 GTCCATTCTGATCTTAGACTAGGAATGAACTCCACATGCTTAGATTGGGAATGAACTCCGT
840 GTCCATTCCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGT
* *
17373929 ATGCCTAAGTCAACCCACGAAACGAGCGTACGGCGTACGGGCGCTCAGCCGACCAAAGGGGCAGG
1 ATGCCTAAGTCAACCCACG-AA--A-CG-A--GCGTACGGGCGCTCAGCCGGCCAAAGGGGCGGG
* * * *
17373994 ATGCGCCAGCCGAGGATCGGCTGGGTCCCCCTCTGCGTGCTACTGATCCTACTACTTCAACCTTC
59 ATGCGCAAGCCGAGGATCGACTGGGTCCCCCTCTGCGTGCTACTGATCCTACTACTACAACCCTC
* * * * *
17374059 GGTCTGATCTAATCTTAGACTGGGAATGAACTCCATATACCTACACCAACCGACGAAACGAACAG
124 GGTCTGATCTAATCTTAGACTGGGAATGAACTCCGTATACGTACACCAACCGATGAAACGAGCGG
* * **
17374124 GCGGGCGGGCAGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCTATGGATCGATTGG
189 GCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATTGG
*
17374189 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
254 GTGGTAGGTGGGTTTAGGCACATCTTCATATATCTGCATGCCAATGCCATTTTTATGGCTTGTAA
17374254 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
319 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * *
17374319 TTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAA-GACGTTTTGG
384 TTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA-GTTTTGG
* * * * *
17374383 CCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGTCATGGACAAAAAAATTCAGCTAAAAG
448 CCCCAAACTTGGTAGACGTGATCATTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
** **
17374448 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGAA
513 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAGACACTTTAATGGC
* * * * *
17374513 TACTGGCAGCAAGCTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGAT
578 TACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGAT
* * *
17374578 GAGGGATAGGGGGCTAATATAAGGGCCAAGTACCCA-TACCCATCGCACATCATGTGCGCACACC
643 GAGGGATAGGGGGCCAATATAAGGGCCAAGTA-CCAGCACCCATCGCACATGATGTGC-CACA-C
17374642 CCCCCGGGCCCCCCGATCACCGGAACCCCAATGCCGTCGGTCAGGTTCT-C--CGA-------CG
705 CCCCC-GGCCCCCCGATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGCG
* * ** * * *
17374697 ATGGTGCC-CGGGCAAAGAAAAATGCGGCACCAGCACATGGGC-ATGCCCAGCATGTGCTGTCGT
769 ATGGTGCCTC-GGCGAAGAGAAATGCGGCACCAGCACATGCCCGA-GCCCAACATGTGCTGCCGC
*
17374760 AACCCTCGATCCGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACT-GGAAATCAAC
832 AA-CC-C--T-CGGT-C---C-----------AT----TCCG-AT-CTTAGACTAGG-AATGAAC
* * *
17374824 TTCGTATGCTTAGACTGGGAATGAACTCCGA
870 TCCATATGCTTAGACTGGGAATGAACTCCGT
* * ** * **
17374855 ATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGTTGGCCAGAGGGGCGGGATGATCA
1 ATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAAAGGGGCGGGATGCGCA
* * * * * * * ** * * *
17374920 AGCAGGGGATCGGCCGGGTCCCGCTCTGCGTGTTGCTGATCCTGTTGCCACAACCCTCGGTCTGG
66 AGCCGAGGATCGACTGGGTCCCCCTCTGCGTGCTACTGATCCTACTACTACAACCCTCGGTCTGA
* * * * * * *
17374985 TCAAATCATAGACTGGGAATGAAATCTGTATGC-CAAAGCCAACCGATGAAACGAGCGGGCGGGC
131 TCTAATCTTAGACTGGGAATGAACTCCGTATACGTACA-CCAACCGATGAAACGAGCGGGCGGGC
* * * *
17375049 GGGTGGGCGGGCACTACGTCGGCCAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTA
195 GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATTGGGTGGTA
* * **
17375114 GGTGGGTTTAGGCACACCATCATATATCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
260 GGTGGGTTTAGGCACATCTTCATATATCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * * * *
17375179 ACAATGGTCCCTTAAGCCTTCACCTGAAGTTTCCTAGCAATACGACTCGTTTTCTATTTTTCATG
325 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
*
17375244 ATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGATGGAGTTTTAGG-CCCAA
390 ATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTT-GGCCCCAA
17375308 ACTTGGTAGACGTGATCATTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
454 ACTTGGTAGACGTGATCATTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* *
17375373 TTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCAAGACACTTTAATGGCTACTAG
519 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAGACACTTTAATGGCTACTAG
* *
17375438 CAGCAAACCTGTAAAATCTCAAACGCTCTTTAAGGAGGTGTGAGTTCTTGAGGTTTGATGAGGGA
584 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGA
17375503 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATGATGTGCCACACCCCCCGGCC
649 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATGATGTGCCACACCCCCCGGCC
* * *
17375568 GCCCCGATCACCAGAACCGCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCTGCGATGGTGCC
714 -CCCCGATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCC-GCGATGGTGCC
* * *
17375633 TCGACGAAGAGAAATGCGGCACCAGCACATGCCCGAGCCCAACATGTGCTGTCGCAACCCTCAGT
777 TCGGCGAAGAGAAATGCGGCACCAGCACATGCCCGAGCCCAACATGTGCTGCCGCAACCCTCGGT
17375698 CCATTCCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGT
842 CCATTCCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGT
* *
17375757 ATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAAAGGGGCGGGATGCACC
1 ATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAAAGGGGCGGGATGCGCA
*
17375822 AGCCGAGGATCGACTGGGTCCCCCTCTACGTGCTACTGATCCTACTACTACAACCCTCGGTCTGA
66 AGCCGAGGATCGACTGGGTCCCCCTCTGCGTGCTACTGATCCTACTACTACAACCCTCGGTCTGA
* *
17375887 TCCAATCTTAGACTGGGAATGAACTCCGTATACGTACACCAACCGATGAAACGAGCGGGCAGGCG
131 TCTAATCTTAGACTGGGAATGAACTCCGTATACGTACACCAACCGATGAAACGAGCGGGCGGGCG
* * * * * *
17375952 GGCAGGCGGGCACTCCGTCGGCCAGAGAGACAGGATCCGCAAGCCGTTGATCGATTGGGTGGTAG
196 GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATTGGGTGGTAG
*
17376017 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
261 GTGGGTTTAGGCACATCTTCATATATCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
17376082 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
326 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* * *
17376147 TTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTCTCGGAAGGATTTTTGGCCCCAAAC
391 TTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
* * * *
17376212 TTGGTAGATGTGACCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
456 TTGGTAGACGTGATCATTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
** *
17376277 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCA
521 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAGACACTTTAATGGCTACTAGCA
* * *
17376342 ACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATA
586 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * * *
17376407 -GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGGGCGCACACCCCCCCGGGC
651 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATGATGTGC-CACA-CCCCCCGGCC
* ** ** *
17376471 CCCCGGTCGTCGGAACCCCAATATCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCC-
714 CCCCGATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCC-GCGATGGTGCCT
* * ** ** *
17376535 CTTGCGAAGAAAAATTTGGCACCAGCACAAACCCGAGCCCAACATTTGCTGCCGCAACCCTCGGT
778 C-GGCGAAGAGAAATGCGGCACCAGCACATGCCCGAGCCCAACATGTGCTGCCGCAACCCTCGGT
* * *
17376600 CCGGTTCCGATC-TAGAC--GGAATTGAACT---T-GGC----ACT--GCATGAACTCCGT
842 CC-ATTCCGATCTTAGACTAGGAA-TGAACTCCATATGCTTAGACTGGGAATGAACTCCGT
* * * * *
17376648 ACGCCTAAGTCAACCCA--AAATGATGACGCT-CGGTGCGC-C-GCC-GCTCAGAGCGGTC-TGA
1 ATGCCTAAGTCAACCCACGAAACGA-G-CG-TACGG-GCGCTCAGCCGGC-CAAAG-GGGCGGGA
* * * * * * ** *
17376706 TGC-CAAGCC--GGATCGA-TCGGGT---CCTC-GCATGTTGCCG-T-CT-GTGCCCGCAATCCT
60 TGCGCAAGCCGAGGATCGACT-GGGTCCCCCTCTGCGTGCTACTGATCCTACT-ACTACAA-CCC
* * * * ** * *
17376760 TTGGTC---TCTGATC-TAGACTGGGAATGAACT-CGTATGC-CA-AGAAACCGACG-GA--AGC
122 TCGGTCTGATCTAATCTTAGACTGGGAATGAACTCCGTATACGTACACCAACCGATGAAACGAGC
** * * * *
17376815 AAG-GTG-TGGC-GG-TGGCA-TACGCCGGCCA-TGAGACGGGATGCGCAAGCTCGTGGATCGA-
187 GGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC-CGTGGATCGAT
* ** *
17376873 T-AGTGGT-GGTGGGTTTAGGCA-A-CTTCATATATCTGTGTGCCAA-GCCATTTTTATGACTTG
251 TGGGTGGTAGGTGGGTTTAGGCACATCTTCATATATCTGCATGCCAATGCCATTTTTATGGCTTG
* *
17376933 TAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTCTCTA
316 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* * * * * *
17376998 TTTTTTAGGATTTTTGAAAGTTTTTGCCGTTCGGGATTTTTTATAATTTTTTCGGAAGGATTTTT
381 TTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTT
17377063 GGCCCCAAACTTGGTAGACGTGATCATTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
446 GGCCCCAAACTTGGTAGACGTGATCATTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
* * * * *
17377128 AACTCAAATTGTAGAAGATTTTTTGACCATTTGAAAAAACTGTCCCCATTCCAGACACTTTAATG
511 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAGACACTTTAATG
17377193 GCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTG
576 GCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTG
17377258 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATGATGTGCCACACC
641 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATGATGTGCCACACC
* * *
17377323 CCCTGGCCCCCTCGATCACAGGAACCCCAATGCCGTCGGTCAGGTTCT----C--TG----GCAA
706 CCCCGGCCCCC-CGATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGCGA
17377378 TGGTGCCTCGGCGAAGAGAAATGCGGCACCAGCACATGCCCGAGCCCAACATGTGCTGCCGCAAC
770 TGGTGCCTCGGCGAAGAGAAATGCGGCACCAGCACATGCCCGAGCCCAACATGTGCTGCCGCAAC
* * * *
17377443 CCTCGGTCCATTCTGATCTTTGACTAGGAATGAACTCCACATGCTTAGATTGGGAATGAACTCCG
835 CCTCGGTCCATTCCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCG
17377508 T
900 T
* * * *
17377509 ATGCCTAAGTTAACCCACGAAACGAGCGTACGGCGTACAGGCGCTCAACCGGGCAAAAGGGCGGG
1 ATGCCTAAGTCAACCCACGAAACGAGCGTA---CG----GGCGCTCAGCCGGCCAAAGGGGC-GG
* * *
17377574 GATGCGCCAGCCGATGGAGTCGGCCTGGGCTCCCCCTCTGGGTGCTACTGATCCTCACTACTACA
58 GATGCGCAAGCCGA-GGA-TC-GACTGGG-TCCCCCTCTGCGTGCTACTGATCCT-ACTACTACA
*
17377639 ACCCTCGGTACTGCATCTAATCTTAGACTCGGGAATGAACCTCCGATATTACCTACACCAAACCG
118 ACCCTCGGT-CTG-ATCTAATCTTAGACT-GGGAATGAA-CTCCG-TA-TACGTACACC-AACCG
*
17377704 ATG-AACGAGCAGGCGGGCGGGCGGGCGGGCAACTACGCCGGCCAGACGAGACGGGATGCGCAAG
176 ATGAAACGAGCGGGCGGGCGGGCGGGCGGGC-ACTACGCCGGCCAGA-GAGACGGGATGCGCAA-
** * * *
17377768 GCCAAGGATC-AATGGGTGGTAGGTGAGTTTAGGGCACATCTTCATATTTCTGCATGCCAATTGC
238 GCCGTGGATCGATTGGGTGGTAGGTGGGTTTA-GGCACATCTTCATATATCTGCATGCCAA-TGC
*
17377832 CATTTTTATGGCTTGTAAATTCATGCAATGGATCCCTTAAGCCTTCACGTGAAGTTTCATGGACA
301 CATTTTTATGGCTTGTAAATTCATACAATGG-TCCCTTAAGCCTTCACGTGAAGTTTCATGG-CA
**
17377897 A-AGCGACTCGTTTTCT-TATTTTCACGATTTTTTGAAACTTTTTATGGTTCGAGGATTTTTT-A
364 AGA-CGACTCGTTTTCTAT-TTTTCACGA-TTTTTGAAACTTTTTGCGGTTCG-GGATTTTTTAA
* * * * * * *
17377959 AATTTTTTCGGAAGCAG-TTTGTGCCCCAAACTTTGTATACATTATC-CTGAATTTTTGTTGGCA
425 AATTTTTTCGGAAGGAGTTTTG-GCCCCAAACTTGGTAGACGTGATCATTGTATTTTTGTTGGCA
** * *
17378022 TGCACAAATCAATTCAGCTAAAAACTCGAGGTGTACAAGATTTTGTGACCATTTGAAAAAGGTGT
489 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
* * * *
17378087 CCCCATTTCAGATACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCCCAAATGCTCTTTAAGG
554 CCCCATTCCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* *
17378152 ATGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATCAGGGCCAAGTACCAGCACCC
619 AGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
*
17378217 ATCACACATG
684 ATCGCACATG
17378227 CCCGAGCCCA
Statistics
Matches: 3694, Mismatches: 436, Indels: 322
0.83 0.10 0.07
Matches are distributed among these distances:
849 7 0.00
850 72 0.02
851 7 0.00
852 4 0.00
855 4 0.00
857 1 0.00
859 2 0.00
860 12 0.00
861 389 0.11
862 64 0.02
863 6 0.00
864 16 0.00
865 5 0.00
866 17 0.00
867 22 0.01
868 9 0.00
869 7 0.00
870 9 0.00
871 6 0.00
872 4 0.00
874 4 0.00
875 10 0.00
876 5 0.00
877 8 0.00
878 17 0.00
879 5 0.00
880 5 0.00
881 12 0.00
882 9 0.00
883 14 0.00
884 9 0.00
885 1 0.00
886 1 0.00
887 11 0.00
888 6 0.00
889 18 0.00
890 22 0.01
891 39 0.01
892 7 0.00
893 5 0.00
894 2 0.00
895 1 0.00
896 1 0.00
897 10 0.00
898 1 0.00
899 7 0.00
900 61 0.02
901 59 0.02
902 767 0.21
903 28 0.01
904 6 0.00
905 16 0.00
906 4 0.00
907 24 0.01
908 15 0.00
909 594 0.16
910 15 0.00
911 42 0.01
912 24 0.01
914 31 0.01
915 31 0.01
916 234 0.06
917 96 0.03
918 19 0.01
919 589 0.16
920 9 0.00
921 1 0.00
922 2 0.00
923 4 0.00
924 4 0.00
925 6 0.00
926 60 0.02
927 2 0.00
928 56 0.02
929 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (900 bp):
ATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAAAGGGGCGGGATGCGCA
AGCCGAGGATCGACTGGGTCCCCCTCTGCGTGCTACTGATCCTACTACTACAACCCTCGGTCTGA
TCTAATCTTAGACTGGGAATGAACTCCGTATACGTACACCAACCGATGAAACGAGCGGGCGGGCG
GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATTGGGTGGTAG
GTGGGTTTAGGCACATCTTCATATATCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
TTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
TTGGTAGACGTGATCATTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAGACACTTTAATGGCTACTAGCA
GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATGATGTGCCACACCCCCCGGCCCC
CCGATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGCGATGGTGCCTCGG
CGAAGAGAAATGCGGCACCAGCACATGCCCGAGCCCAACATGTGCTGCCGCAACCCTCGGTCCAT
TCCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGT
Found at i:17378300 original size:26 final size:26
Alignment explanation
Indices: 17378271--17378323 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17378261 CCGGTTCAAT
*
17378271 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
* *
17378297 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
17378323 C
1 C
17378324 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:17378802 original size:785 final size:806
Alignment explanation
Indices: 17377410--17379010 Score: 2144
Period size: 785 Copynumber: 2.0 Consensus size: 806
17377400 GCGGCACCAG
* * * * *
17377410 CACATGCCCGAGCCCAACATGTGCTGCCGCAACCCTCGGTCCATTCTGATCTTTGACTAGGAATG
1 CACATGCCCGAGCCCAACATGTGCTACCGCAACCCTCGATCCATTCTAATCTTAGACTAGGAATA
* * *
17377475 AACTCCACATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAACGAGCGTAC
66 AACTCCACATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTA-
* ** * * * *
17377540 GGCGTACAGGCGCTCAACCGGGCAAAAGGGCGGGGATGCGCCAGCCGATGGAGTCGGCCTGGGCT
130 -GCG---AGGCACTCAACCGACCAAAAGGGCGGGGATGCGCAAGCCGAGGGAGTCGACCTGAGCT
** *
17377605 CCCCCTCTGGGTGCTACTGATCCTCACTACTACAACCCTCGGTACTGCATCTAATCTTAGACTCG
191 CCCCCTCTACGTGCTACTGATCCTCACTACTACAACCCTCGGTACTGCATCCAATCTTAGACTCG
* * *
17377670 GGAATGAACCTCCGATATTACCTACACCAAACCGATGAACGAGCAGGCGGGCGGGCGGGCGGGCA
256 AGAATGAAACTCCGATATTACCTACACCAAACCGACGAACGAGCAGGCGGGCGGGCGGGCGGGCA
17377735 ACTACGCCGGCCAGACGAGACGGGATGCGCAAGGCCAAGGATCAATGGGTGGTAGGTGAGTTTAG
321 ACTACGCCGGCCAGACGAGACGGGATGCGCAAGGCCAAGGATCAATGGGTGGTAGGTGAGTTTAG
* * *
17377800 GGCACATCTTCATATTTCTGCATGCCAATTGCCATTTTTATGGCTTGTAAATTCATGCAATGGAT
386 GGCACATCTTAATATTTCTGCATGCCAATTGCCATTTTTATGGCTTGTAAATTCATACAACGGAT
** * *
17377865 CCCTTAAGCCTTCACGTGAAGTTTCATGGACAAAGCGACTCGTTTTCTTATTTTCACGATTTTTT
451 CCCACAAGCCTTCACGTGAAGTTTCATGGACAAAGCGACTCGTTTTCTTATTTTCAAGATTTTTC
* * *
17377930 GAAACTTTTTATGGTTCGAGGATTTTTTAAATTTTTTCGGAAGCAGTTTGTGCCCCAAACTTTGT
516 AAAACTTTTTACGGTTCGAGGATTTTTTAAATTTTTTCGGAAGCAGTTTGTGCCCCAAACTTGGT
* * ** * * *
17377995 ATACATTATCCTGAATTTTTGTTGGCATGCACAAATCAATTCAGCTAAAAACTCGAGGTGTACAA
581 AGACATGATCCTGAATTTTTGTTGGCATGCACAAAAAAATTCACCTAAAAACTCGAAGTATACAA
* *
17378060 GATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTCAGATACTTTAATGGCTACTGGCAGCAAAC
646 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
17378125 CTGTAAAATCCCAAATGCTCTTTAAGGATGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
711 CTGTAAAATCCCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* *
17378190 CAATATCAGGGCCAAGTACCAGCACCCATCA
776 CAATATAAGGGCCAAGTACCACCACCCATCA
* * * *
17378221 CACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGATCCGGTTC-AATCTTAGACTGGGAAT
1 CACATGCCCGAGCCCAACATGTGCTACCGCAACCCTCGATCC-ATTCTAATCTTAGACTAGGAAT
** * *
17378285 AAACTCCGTATGCTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCCAGGAAACGAGCGT-
65 AAACTCCACATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTA
** * *
17378349 GCG-GGCACTCAGTCGACCAGAGGGGC-GGGATGCGCAAGCCG-GGGA-TCGACCT-AG-TCCCC
130 GCGAGGCACTCAACCGACCAAAAGGGCGGGGATGCGCAAGCCGAGGGAGTCGACCTGAGCTCCCC
* * *
17378408 CTCTACGTGCTGCTGATCCT-GCTACTGCAACCCTCGGT-CTG-ATCCAATCTTAGACTC-AGAA
195 CTCTACGTGCTACTGATCCTCACTACTACAACCCTCGGTACTGCATCCAATCTTAGACTCGAGAA
* * *
17378469 T-AAACTCCG-TA-TGCCTA-AGCC-AACCGACGAAATGAGCGGGCGGGCGGGCGGGCGGGC-AC
260 TGAAACTCCGATATTACCTACA-CCAAACCGACG-AACGAGCAGGCGGGCGGGCGGGCGGGCAAC
* * * * ** * *
17378528 TGCGCCGGCCAGA-GAGATGGGATGTGCAA-GTCGTGGATCGATAGGGTGGTAGGTGGGTTTA-G
323 TACGCCGGCCAGACGAGACGGGATGCGCAAGGCCAAGGATCAAT-GGGTGGTAGGTGAGTTTAGG
*
17378590 GCACATCTTAATATTTCTGCATGCCAA-TGCCATTTTTATGGTTTGTAAATTCATACAACGG-TC
387 GCACATCTTAATATTTCTGCATGCCAATTGCCATTTTTATGGCTTGTAAATTCATACAACGGATC
* *
17378653 CCACAAGCCTTCACGTGAAGTTTCAT-G-CCAAGACTACTCGTTTT-TTATTTTTCAAGA-TTTT
452 CCACAAGCCTTCACGTGAAGTTTCATGGACAAAG-CGACTCGTTTTCTTA-TTTTCAAGATTTTT
* * * *
17378714 CAAAACTTTTTGCGGTTTG-GGATTTTTTAAATTTTTTTGGAAGGAGTTT-TGGCCCCAAACTTG
515 CAAAACTTTTTACGGTTCGAGGATTTTTTAAATTTTTTCGGAAGCAGTTTGT-GCCCCAAACTTG
* *
17378777 GTAGACATGATCCTTGTATTTTTGTTGGCGTGCACAAAAAAATTCACCTAAAAACTCGAAGTATA
579 GTAGACATGATCC-TGAATTTTTGTTGGCATGCACAAAAAAATTCACCTAAAAACTCGAAGTATA
*
17378842 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCA
643 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* *
17378907 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
708 AACCTGTAAAATCCCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
*
17378972 GGCCAATATAAGGGCCAAGTACCACCACCCATGA
773 GGCCAATATAAGGGCCAAGTACCACCACCCATCA
17379006 CACAT
1 CACAT
17379011 CATGCGTGCA
Statistics
Matches: 700, Mismatches: 82, Indels: 42
0.85 0.10 0.05
Matches are distributed among these distances:
783 1 0.00
784 50 0.07
785 229 0.33
786 19 0.03
787 26 0.04
788 31 0.04
789 36 0.05
790 31 0.04
791 22 0.03
792 32 0.05
793 2 0.00
794 7 0.01
795 4 0.01
796 15 0.02
797 3 0.00
798 16 0.02
799 22 0.03
800 1 0.00
801 6 0.01
802 3 0.00
803 14 0.02
804 16 0.02
808 3 0.00
811 108 0.15
812 3 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.26
Consensus pattern (806 bp):
CACATGCCCGAGCCCAACATGTGCTACCGCAACCCTCGATCCATTCTAATCTTAGACTAGGAATA
AACTCCACATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTAG
CGAGGCACTCAACCGACCAAAAGGGCGGGGATGCGCAAGCCGAGGGAGTCGACCTGAGCTCCCCC
TCTACGTGCTACTGATCCTCACTACTACAACCCTCGGTACTGCATCCAATCTTAGACTCGAGAAT
GAAACTCCGATATTACCTACACCAAACCGACGAACGAGCAGGCGGGCGGGCGGGCGGGCAACTAC
GCCGGCCAGACGAGACGGGATGCGCAAGGCCAAGGATCAATGGGTGGTAGGTGAGTTTAGGGCAC
ATCTTAATATTTCTGCATGCCAATTGCCATTTTTATGGCTTGTAAATTCATACAACGGATCCCAC
AAGCCTTCACGTGAAGTTTCATGGACAAAGCGACTCGTTTTCTTATTTTCAAGATTTTTCAAAAC
TTTTTACGGTTCGAGGATTTTTTAAATTTTTTCGGAAGCAGTTTGTGCCCCAAACTTGGTAGACA
TGATCCTGAATTTTTGTTGGCATGCACAAAAAAATTCACCTAAAAACTCGAAGTATACAAGATTT
TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
AAATCCCAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
TAAGGGCCAAGTACCACCACCCATCA
Found at i:17379212 original size:26 final size:26
Alignment explanation
Indices: 17379176--17379226 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17379166 GTCTGATCTT
17379176 AGACTGGGAATGAACTCCGTATGCTG
1 AGACTGGGAATGAACTCCGTATGCTG
*
17379202 AGACTGGGAATGAACTTCGTATGCT
1 AGACTGGGAATGAACTCCGTATGCT
17379227 TAAGTCAACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.25
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTG
Found at i:17379789 original size:902 final size:902
Alignment explanation
Indices: 17378232--17380101 Score: 2737
Period size: 902 Copynumber: 2.1 Consensus size: 902
17378222 ACATGCCCGA
* *
17378232 GCCCAGCATGTGCTACCGTAACCCTCGATCCGGT-TCAATCTTAGACTGGGAATAAACTCCGTAT
1 GCCCAGCATGTGCTGCCGTAACCCTCGATCCGGTCT-AATCTTAGACTGGGAATGAACTCCGTAT
* * *
17378296 GCTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCCAGGAAACGAGCGTGCGGGCACTCAG
65 GCTGAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAG
* * * * * *
17378361 TCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCTAGTCCCCCTCTACGTGCTGCTGATC
130 TCGACCAGAGGGGCAGCATGCACAAGCCGGGGATCGACCGAGTCCCCCTCTACGTGCTACCGATC
* ** * *
17378426 CTGCTACTGCAACCCTCGGTCTGATCCAATCTTAGACTCAGAATAAACTCCGTATGCCTAAGCCA
195 CTACTACCACAACCCTCAGTCCGATCCAATCTTAGACTCAGAATAAACTCCGTATGCCTAAGCCA
* * * * *
17378491 ACCGACGAAATGAGCGGGCGGGCGGGCGGGCGGGCACTGCGCCGGCCAGAGAGATGGGATGTGCA
260 ACCGACGAAATGAGCGGGCAGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGTACA
*
17378556 AGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTAATATTTCTGCATGCCAATGCC
325 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTAATATTTCTGCATGCCAATGCC
*
17378621 ATTTTTATGGTTTGTAAATTCATACAACGGTCCCACAAGCCTTCACGTGAAGTTTCATGCCAAGA
390 ATTTTTATGGCTTGTAAATTCATACAACGGTCCCACAAGCCTTCACGTGAAGTTTCATGCCAAGA
* * * * *** * *
17378686 CTACTCGTTTTTTATTTTTCAAGATTTTCAAAACTTTTTGCGGTTTGGGATTTTTTAAATTTTTT
455 CGACTCATATTTTATTTTTCAAGATTTTCAAAACTTTTTACGGTTCAAGATTTTTTAAAATATTT
*
17378751 TGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCGTGCACAAAA
520 TGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
17378816 AAATTCACCTAAAAACTCGAAGTATACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTT
585 AAATTCACCTAAAAACTCGAAGTATACAAGATTTTGGGACCATTTGAAAAAAGTGTCCCCATTTC
*
17378881 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
650 AGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
17378946 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCACCACCCA-TGACACA
715 TTCTCGAGGTTTGATGACGGATAGGGGGCCAATATAAGGGCCAAGTACCACCACCCACCG-CACA
* *
17379010 TCATGCGTGCACACCCCCCTGGCCCCCCCGATCGCCGGAACCCCAATCCGTCGGTCAGGTTCTCC
779 TCATGCGCGCACACCCCCCTGGCCCCCCCGATCGCCAGAACCCCAATCCGTCGGTCAGGTTCTCC
* ** *
17379075 GGCGATGCTCCGGCGATGGTGCCCTGATGAAGAAAAATA-TGGCACCAGCAA-ATGCACTT
844 GACGATGCTCCGGCGATGGTGCCCCAATGAAGAAAAA-AGCGGCACC-GCAACATGCACTT
* ** *
17379134 GCCCAGCATGTGCTGCCGTAACCCTCGGTTTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
1 GCCCAGCATGTGCTGCCGTAACCCTCGATCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATG
* * *
17379199 CTGAGACTGGGAATGAACT-TCGTATGCTTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAG
66 CTGAGACTAGGAATGAACTCT-GTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAG
* * * *
17379263 TCGGCCAGAGGGGCAGCATGCACAAGCCGGGGATCGATCGGGTCCCCCTCTGCAG-GCTACCGAT
130 TCGACCAGAGGGGCAGCATGCACAAGCCGGGGATCGACCGAGTCCCCCTCTAC-GTGCTACCGAT
* * * ** * *
17379327 CCTACTGCCACAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCC
194 CCTACTACCACAACCCTCAGTCCGATCCAATCTTAGACTCAGAATAAACTCCGTATGCCTAAGCC
* * *
17379392 AACTGATGAAATGAGCGGGCAGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGTAC
259 AACCGACGAAATGAGCGGGCAGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGTAC
* ** *
17379457 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTTGGCACATCTTCTTATTTTTGCATGCCAATGC
324 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTAATATTTCTGCATGCCAATGC
* ** *
17379522 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATTG-CAA
389 CATTTTTATGGCTTGTAAATTCATACAACGGTCCCACAAGCCTTCACGTGAAGTTTCA-TGCCAA
* **
17379586 GACGACTCATATTTTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATAT
453 GACGACTCATATTTTATTTTTCAAGATTTTCAAAACTTTTTACGGTTCAAGATTTTTTAAAATAT
* * * * * * *
17379651 TTTGGAAGGAGTTTTGGCCCCAAACTTGGTGGTCGTGATCCTTGTATTTTTTTTGGTATGCTCAC
518 TTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAA
* *
17379716 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGGGACCATTTGAAAAAAGTGTCCCCATT
583 AAAAATTCACCTAAAAACTCGAAGTATACAAGATTTTGGGACCATTTGAAAAAAGTGTCCCCATT
* *
17379781 TCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCACATGCTCTTTGAGGGGGTGTG
648 TCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
17379846 AGTTCTCGAGGTTTGATGACGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCACCGCAC
713 AGTTCTCGAGGTTTGATGACGGATAGGGGGCCAATATAAGGGCCAAGTACCACCACCCACCGCAC
* * * * *
17379911 ATCATGTGCGCACACCCCCCTGGCCCCCCCGATCGTCAGAACTCTAATCCGTCGGTCAGGTTCTT
778 ATCATGCGCGCACACCCCCCTGGCCCCCCCGATCGCCAGAACCCCAATCCGTCGGTCAGGTTCTC
* *
17379976 CGACGATGCTCTGGCGATGGTGCCCCAATGAAGAAAAAAGCGGCACCGGAACATGCACTT
843 CGACGATGCTCCGGCGATGGTGCCCCAATGAAGAAAAAAGCGGCACCGCAACATGCACTT
* * * *
17380036 GCCCAGCATGTGCTGTCGCAACCCTCGATCCGGTCCAATCTTAGACTGAGAATGAACTCCGTATG
1 GCCCAGCATGTGCTGCCGTAACCCTCGATCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATG
17380101 C
66 C
17380102 CTAAGTCAAC
Statistics
Matches: 858, Mismatches: 103, Indels: 14
0.88 0.11 0.01
Matches are distributed among these distances:
901 5 0.01
902 848 0.99
903 5 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (902 bp):
GCCCAGCATGTGCTGCCGTAACCCTCGATCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATG
CTGAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAGT
CGACCAGAGGGGCAGCATGCACAAGCCGGGGATCGACCGAGTCCCCCTCTACGTGCTACCGATCC
TACTACCACAACCCTCAGTCCGATCCAATCTTAGACTCAGAATAAACTCCGTATGCCTAAGCCAA
CCGACGAAATGAGCGGGCAGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGTACAA
GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTAATATTTCTGCATGCCAATGCCA
TTTTTATGGCTTGTAAATTCATACAACGGTCCCACAAGCCTTCACGTGAAGTTTCATGCCAAGAC
GACTCATATTTTATTTTTCAAGATTTTCAAAACTTTTTACGGTTCAAGATTTTTTAAAATATTTT
GGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAA
AATTCACCTAAAAACTCGAAGTATACAAGATTTTGGGACCATTTGAAAAAAGTGTCCCCATTTCA
GACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
TCTCGAGGTTTGATGACGGATAGGGGGCCAATATAAGGGCCAAGTACCACCACCCACCGCACATC
ATGCGCGCACACCCCCCTGGCCCCCCCGATCGCCAGAACCCCAATCCGTCGGTCAGGTTCTCCGA
CGATGCTCCGGCGATGGTGCCCCAATGAAGAAAAAAGCGGCACCGCAACATGCACTT
Found at i:17380970 original size:26 final size:26
Alignment explanation
Indices: 17380931--17380983 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17380921 CCTGTCTGAT
17380931 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
17380957 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
17380983 C
1 C
17380984 CTCAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:17381873 original size:26 final size:26
Alignment explanation
Indices: 17381837--17381915 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
17381827 CCGGTCTAAT
* *
17381837 CTTAGGCTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17381863 CTTAGACTGGGAACGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17381889 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17381915 C
1 C
17381916 CTCAGTCAAC
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17382463 original size:925 final size:930
Alignment explanation
Indices: 17380931--17382814 Score: 2853
Period size: 925 Copynumber: 2.0 Consensus size: 930
17380921 CCTGTCTGAT
*
17380931 CTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTCAGTCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTCAGTCAACCC
* * * * * * * *
17380996 ATGGAACGAGCGTGCGGGCGCTGAGCCGGCCAGAGGGGCGGGATGCATAAGCCGGGGATCGGCCG
66 ACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGAGATGCACAAGCCGAGGATCGACCG
* * *
17381061 GCTCCCCCTCTACGTGGTGCCAATCCTGTTGCCGCAACCCTCAATCCGGTCTGATCTTACACTGG
131 GCTCCCCCTCTACGTGCTGCCAATCCTGCTGCCACAACCCTCAATCCGGTCTGATCTTACACTGG
*
17381126 GAATGAACTCCATATGCCTAAGCCAACCGACGAAAGAAACGGGCGGGCGGGCGGGCGACCACTAC
196 GAATGAACTCCATATGCCTAAGCCAACCGAC--AAGAAACGAGCGGGCGGGCGGGCGACCACTAC
*
17381191 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
259 GCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
*
17381256 CTTCATATTTCTTCATGCCAATACCATTTTTATGGCTTGTAAACTCATACAATGGTCCCCTAAGC
324 CTTCATATTTCTTCATGCCAATACCATTTTTACGGCTTGTAAACTCATACAATGGTCCCCTAAGC
* *
17381321 CTTCACATGAAGTTTCATGGCAAGACGACTTTTTTTTCTATTTTTCATGATTTTTGAAAGTTTTT
389 CTTCACATGAAGTTTCATGGCAAGACGACTTTGTTTTCTATTTTTCATGATTTTTGAAACTTTTT
* * * *
17381386 GCGGTTCGAGATTTTCTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATC
454 ACGGTTCGAGATTTTCTAAAATTTTTTCGAAAGGAGCTTTGGCCCCAAACTTGGTAGACGTGATC
* * *
17381451 CTTTTATTTTGGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
519 CTTGTATTTTGGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTG
* * *
17381516 ACGATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACTTGTAAAAT
584 ACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTATAAAAT
*
17381581 CTCAAATGCCCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAAGGATAGGAGGCCAATATAAG
649 CTCAAATGCCCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGACGAAGGATAGGAGGCCAATATAAG
* * *
17381646 GGCCAAGTACCAGCACACATCGCACATCATGTGCACACACCCCCCCTGACCCCCCCGATCGTTAG
714 CGCCAAGTACCAGCACACATCGCACATCATGTGCACACACCCCACCTGACCCCCCCGATCGTCAG
* * * * * *
17381711 AACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGATGATGGTACCCTGACGAAGAAAAA
779 AACCCCAATGCCGCCGGTCAGGTTCTCAGGCGATGCTCCAACGATGGTACCCCGACGAAGAAAAA
* * * *
17381776 TGCGACACCAGCACATGCCCGATCCCAACATGTGCTGCAACAACCATCGGTCCGGTCTAATCTTA
844 TGCGACACCAGCACATGCCCGAGCCCAACATGTGCTACAACAACCATCGGTCCGATCCAATCTTA
*
17381841 GGCTGGGAATGAACTTCGTATG
909 GACTGGGAATGAACTTCGTATG
*
17381863 CTTAGACTGGGAACGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTCAGTCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTCAGTCAACCC
* * * * * *
17381928 ACGAAACGA-TGTGCGGGCGCTCAGTCGACCAGAGGGGCGAGATGCGCAAGTCGATGATCGATCG
66 ACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGAGATGCACAAGCCGAGGATCGACCG
* * * * *
17381992 GGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCATAACCCTCAGTCCGGTCTGATCTTAGACTGG
131 GCTCCCCCTCTACGTGCTGCCAATCCTGCTGCCACAACCCTCAATCCGGTCTGATCTTACACTGG
* * * **
17382057 GAATGAACTCCGTATGCCTAAGCCAACCGAC-A-AAACGAGTGGGCGGGCGGGTGGGCACTACGC
196 GAATGAACTCCATATGCCTAAGCCAACCGACAAGAAACGAGCGGGCGGGCGGGCGACCACTACGC
* *
17382120 TGGCCAGAGAGACGGGATGCGCAAGCTATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
261 CGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* * * *
17382185 TCATATTTCTGT-GTGCCAATGCCATTTTTACGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
326 TCATATTTCT-TCATGCCAATACCATTTTTACGGCTTGTAAACTCATACAATGGTCCCCTAAGCC
*
17382249 TTCAC-TGAAGTTTCATGGCAAGACGAC-TTGTTTTCTATTTTTTATGATTTTTGAAACTTTTTA
390 TTCACATGAAGTTTCATGGCAAGACGACTTTGTTTTCTATTTTTCATGATTTTTGAAACTTTTTA
*
17382312 CGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGCTTTGGCCCCAAACTTGGTAGACGTGATCC
455 CGGTTCGAGATTTTCTAAAATTTTTTCGAAAGGAGCTTTGGCCCCAAACTTGGTAGACGTGATCC
** * *
17382377 TTGTATTTTTTTTGGCATGCACAAAAACATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGG
520 TTGTATTTTGGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGA
* *
17382442 CCATTTGAAAAAGGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATC
585 CCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTATAAAATC
* * * *
17382507 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGACGAGGGATAGGGGGCCAATATAAGC
650 TCAAATGCCCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGACGAAGGATAGGAGGCCAATATAAGC
* * * * *
17382572 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCACCTGGCCCCCCCGATTGTCGGA
715 GCCAAGTACCAGCACACATCGCACATCATGTGCACACACCCCACCTGACCCCCCCGATCGTCAGA
* * * *
17382637 ACCCCAATGCCGCCGGTTAGGTTCTCAGGCGGTGCTCTAACGATGGTGCCCCGACGAAGAAAAAT
780 ACCCCAATGCCGCCGGTCAGGTTCTCAGGCGATGCTCCAACGATGGTACCCCGACGAAGAAAAAT
* * ** * * *
17382702 GTGGCACCAGCACATGCCCGAGCCCAACATGTGCTACTGCGACCCTCGGTCCGATCCGATCTTAG
845 GCGACACCAGCACATGCCCGAGCCCAACATGTGCTACAACAACCATCGGTCCGATCCAATCTTAG
*
17382767 ATTGGGAATGAACTTCGTATG
910 ACTGGGAATGAACTTCGTATG
17382788 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
17382815 CTAAGTCAAC
Statistics
Matches: 856, Mismatches: 95, Indels: 9
0.89 0.10 0.01
Matches are distributed among these distances:
925 482 0.56
926 22 0.03
927 150 0.18
928 2 0.00
931 130 0.15
932 70 0.08
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (930 bp):
CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTCAGTCAACCC
ACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGAGATGCACAAGCCGAGGATCGACCG
GCTCCCCCTCTACGTGCTGCCAATCCTGCTGCCACAACCCTCAATCCGGTCTGATCTTACACTGG
GAATGAACTCCATATGCCTAAGCCAACCGACAAGAAACGAGCGGGCGGGCGGGCGACCACTACGC
CGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
TCATATTTCTTCATGCCAATACCATTTTTACGGCTTGTAAACTCATACAATGGTCCCCTAAGCCT
TCACATGAAGTTTCATGGCAAGACGACTTTGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAC
GGTTCGAGATTTTCTAAAATTTTTTCGAAAGGAGCTTTGGCCCCAAACTTGGTAGACGTGATCCT
TGTATTTTGGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGAC
CATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCT
CAAATGCCCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGACGAAGGATAGGAGGCCAATATAAGCG
CCAAGTACCAGCACACATCGCACATCATGTGCACACACCCCACCTGACCCCCCCGATCGTCAGAA
CCCCAATGCCGCCGGTCAGGTTCTCAGGCGATGCTCCAACGATGGTACCCCGACGAAGAAAAATG
CGACACCAGCACATGCCCGAGCCCAACATGTGCTACAACAACCATCGGTCCGATCCAATCTTAGA
CTGGGAATGAACTTCGTATG
Found at i:17382798 original size:26 final size:26
Alignment explanation
Indices: 17382762--17382814 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17382752 CCGATCCGAT
* *
17382762 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17382788 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17382814 C
1 C
17382815 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17383382 original size:26 final size:26
Alignment explanation
Indices: 17383353--17383403 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
17383343 TGGTTCGATC
* * *
17383353 TTAGACTGGGAATGAACTTCGTATGG
1 TTAGACTAGAAATGAACTCCGTATGG
*
17383379 TTAGATTAGAAATGAACTCCGTATG
1 TTAGACTAGAAATGAACTCCGTATG
17383404 CCTGAGTCAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.31, C:0.12, G:0.25, T:0.31
Consensus pattern (26 bp):
TTAGACTAGAAATGAACTCCGTATGG
Found at i:17385567 original size:869 final size:849
Alignment explanation
Indices: 17382907--17389822 Score: 6305
Period size: 895 Copynumber: 7.9 Consensus size: 849
17382897 CCCTCTGCAA
* * *
17382907 TTCGGGATTTTTTAAAATTTTTTTGG-A--TGGCA-TTTTGTCCCCAAACTTGGTAGACATGATC
1 TTCGAGATTTTTTAAAATTTTTTAGGAATTTGG-AGTTTTG-CCCCAAACTTGGTAGACGTGATC
* * * *
17382968 TTTGTATTTTTTTTGGCATGCACCAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTG
64 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* *
17383033 ACCGTTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
129 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
*
17383098 CTCAAATTCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
194 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * * * *
17383163 GGCCAAGTACTAGCACCCATCACACATCATGTGCGCACACCCCCC-GACACCCCCGATTGTCAGA
259 GGCCAAGTACCAGCACCCATCGCACATCATGTG-ACACACCCCCCAG-C-CCCCCGATCGTCGGA
* * * * * *
17383227 ACCCTAATGCTGCCAGTCAAGTTCTCCGACGATGCTTCGGTGATGGTGCCCCGACGAAGAAAAAT
321 ACCC-AATGCCGTCGGTCAGGTTCTCTGACGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAAT
* * * * *
17383292 GCGGCACCAGCACTTGTCTGAGCCCAGTATGTGCTGCCGCAACCCTCAGTCTGGTTCGATCTTAG
385 GCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC----T-GATC-T-G
* * *
17383357 ACTGGGAATGAACTTCGTA-TGGTTAGATTAGAAATGAACTCCGTATGCCTGAGTCAACCCACGA
443 A-T----AT----TTAG-ACT-G---G----G-AATGAACTCCGTATGCCTAAGTCAACCCATGA
* * * *
17383421 AACGAGCGTGCGGGTGCTCAGCCGGCCAGAAGGGTGGGATGCGCAAGTCATGGATCAACCGGGTC
489 AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC-A---A-GGATCGA--GGGTC
** ** * * * * *
17383486 CCTTTCTATGTGCTGCCGATCATGCTGCCCCAACCCTCGGTC-GGTCCAATCTTAGACTGAGAAT
547 CCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAAT
* *
17383550 GAACTTCATATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGTCGGGCGGGCGGGCGGGCA
612 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCA----------------GGCGGGCGGGCA
* * * * *
17383615 CCACGCGGGCCAGAGAGATGGGATGCACAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGC
661 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
*
17383680 ACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
726 ACATCTTCATA--TGT---T-CC-ATG------TTATGGCTTGTAAATTCATACAATGGTCCCTT
* * * **
17383745 AAGCCTTCACGTGAAGTTTCATGGCAGGATGACTCCTTTTCTATTTTTCACGATTTTCAAAACTT
778 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTT
*
17383810 TTTGCGG
843 TTTACGG
* * * * * * *
17383817 TTCAAGATTTTTCAAAATTTTTTCGGAA--T-AAGTTTCAGGCCGAAACTTGGTA-AGCGTGATC
1 TTCGAGATTTTTTAAAATTTTTTAGGAATTTGGAGTTT-TGCCCCAAACTTGGTAGA-CGTGATC
* * * *
17383878 CTTGTATTTTTGTTGCCATGTACAAAACAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTG
64 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* *
17383943 ACCATTTGAAAATAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAAT
129 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
*
17384008 CTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAG
194 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * *
17384072 GGCCAAGTACCAGCACCCATCGCACATCCTGTTAGCACACCCCCCGGCCCCCCCGATCGTCGGAA
259 GGCCAAGTACCAGCACCCATCGCACATCATGTGA-CACACCCCCCAG-CCCCCCGATCGTCGGAA
* ** * *
17384137 CCCAAATGTCGTCGGTCAGGTTCTCCAACGATGCTCCGATGATGGTGCCCCGACGAAGAGAAATG
322 CCC-AATGCCGTCGGTCAGGTTCTCTGACGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATG
* * * * * *
17384202 TGGCACCAGCACTTGCCCGAGCCCAGCATGTGCTGCTGCCACCCTCGGTCTGGTCTGAT-CTTAG
386 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCTGATATTTAG
* *** *
17384266 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCGATGAAACGAGCGGTAATGGCGCTCAAACCGG
451 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGC-GTGCGGGCGCTC-AGCC-G
* * *
17384331 GCCAGAAGGGG-GGTATGCCGCAAGTCGGTGGCTCGACGGGGGTCCCCCTCTACGTGCTGTCGAT
513 GCCAG-AGGGGCGGGATG-CGCAA------GGATCGA---GGGTCCCCCTCTGCGTGCTGTCGAT
* ** * **
17384395 CCTGCTACC-CAAACCCTCGG-CTCGGTCTAATCTTAGAAT-GGAATGAACTCTATATGCCTAAG
567 CCTGCTGCCGC-AACCCTCGGTCT-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* ** * * * * * *
17384457 CCAACCGATG-AA--ATTA-GCGGGCGGGCACTACGCTGGCCAAAGAGATGGGACGCACAAGCCA
630 CCAACCGACGAAACGAGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
*
17384518 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
695 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA----TG--T-----T-CCA-TGT
* *
17384583 TATGGCTTGTAAATTCATACAATGGTCCCTTGA-CCATTCACGTGAAGTTTCATGGCAAGATGAC
747 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC-TTCACGTGAAGTTTCATGGCAAGACGAC
17384647 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGG
811 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGG
* * ** *
17384686 TTCG-GAATTTTTTAAAATTTTTTCGGAA---GGATTTTTAGCCCCAAACTTTTTGGACGTGATC
1 TTCGAG-ATTTTTTAAAATTTTTTAGGAATTTGGAGTTTT-GCCCCAAACTTGGTAGACGTGATC
17384747 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
64 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* * *
17384812 ACCATTTGAAAAAAGTGTCCCCATTTCAAACATTTTGATGGCTACT-GCAGCAAACCTGTAAAAT
129 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
*
17384876 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGTTTTGATGAGGGATAGGGGGCCAATATAAG
194 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
*
17384941 GGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCCCCAGCCACCCCGATCGCCG
259 GGCCAAGTACCAGCACCCATCGCACATCATGTG-ACACA---CCCCCCAGCC-CCCCGATCGTCG
* * **
17385006 GAACCACAATGCCGCCGGTCAGGTTCTCTGGCGATGCTCCGGTGATGGTGCCTTGACGAAGAAAA
319 GAACC-CAATGCCGTCGGTCAGGTTCTCTGACGATGCTCCGGTGATGGTGCCCCGACGAAGAAAA
* * * **
17385071 ATGTGGCACCAGCACATGCCTGAGCCCAGCATGTGTTTTCGCAACCCTCGGTCTGATCTGAT-TT
383 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCTGATATT
* * * * *
17385135 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGAGCACTCAACCG
448 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * *
17385200 GCCAGAGGGGCGGGATGCGGAA-G-TC-A-GGTCCCCTTCTGCATGCTATCGATCCTGCTGCCGT
513 GCCAGAGGGGCGGGATGCGCAAGGATCGAGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGC
* * * ** * *
17385261 AACCCTCGGTCTGATCCAATCTTAGACTGATGAATGAACTCCGTATGTATAAGCCGACCGATGAA
578 AACCCTCGGTCTGGTCCGATCTTAGACTG-GGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
*
17385326 ACGAGCAGGCGGGCGGGCACTACGCCTGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
642 ACGAGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
*
17385391 GTGGTAGGTGGGTTTAGGCACATCTTCATA-GTT-C-TG-TATGCCTTGTAAATTCATACAATGG
707 GTGGTAGGTGGGTTTAGGCACATCTTCATATGTTCCATGTTATGGCTTGTAAATTCATACAATGG
* * *
17385452 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCATTTTCTATTTTTCATGATTTTTG
772 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
*
17385517 AAACTTTTTGCGG
837 AAACTTTTTACGG
* * * *
17385530 TTCGAGATTTTTTTAAAATTTTTT-TGAA--AGGATTTTTTGCCCCAAACTTGGTAGATGTGATC
1 TTCGAGA-TTTTTTAAAATTTTTTAGGAATTTGGA-GTTTTGCCCCAAACTTGGTAGACGTGATC
* * *
17385592 CTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACACGATTTTGTA
64 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* * * *
17385657 ACCATTTGAAAAGAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGAAGCAAACTTGTAAAAT
129 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* * * * * *
17385722 CTCAAATGGTCTTTAA-GGGGTGTGAGTTGTTGAGGTTTGATGAGGCATAGGAGGCCAGTATAAG
194 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * * * **
17385786 GGCGAAGTACCAGCACTCATCTCACATCATGT-ACGCACACCCCGTC-GTCTCCCCCGATCACCG
259 GGCCAAGTACCAGCACCCATCGCACATCATGTGA--CACACCCC-CCAG-C-CCCCCGATCGTCG
* * * * * * *
17385849 GAACCCCAATGCCGTCGGTCCGG-TCTTTCAGCGATGCTCTGATGATGGTGCCTCGACAAAGAAA
319 GAA-CCCAATGCCGTCGGTCAGGTTCTCTGA-CGATGCTCCGGTGATGGTGCCCCGACGAAGAAA
* *
17385913 AATGAGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGATCTAGTCTGATCT
382 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG-----GTCTGA---
17385978 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAT
439 T---C------TG-A-----TAT--TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAT
* * * *
17386043 GAAACGAGCGTGCGGGCACTCAACCGGCTAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGG
487 GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA-----GGATCGA--GGG
* * * * * * * *
17386108 TCCCCCTCTACATGCTGCCGATCCTGCTGCTGCAACCCTCGGTCCGATCCGATCTTAGACAGGTA
545 TCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGA
* * *
17386173 ATGCACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCGGAGGGTGGGCACTACGCC
610 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGC-------GGGCACTACGCC
* * * *
17386238 GGTCAAAGAGACGGGATGCGCAAGCCGTGGATCGATACGGTGGTAGGTGGGCTTAGGCACATCTT
668 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* *
17386303 CATATTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAACCTTC
733 CATA---TGT-T-CC-ATG------TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * ** *
17386368 ACGAGAAGTTTCACGG-AAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGA
786 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGG
* * *
17386431 TTTGAGATTTTTTAAACTTTTTTCGGAA---GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
1 TTCGAGATTTTTTAAAATTTTTTAGGAATTTGGAGTTTT-GCCCCAAACTTGGTAGACGTGATCC
* *
17386493 TTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGA
65 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* * *
17386558 CAATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATC
130 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* *
17386623 TCAAATGTTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGCG-TAGGGGGCCAATATAAG
195 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG-GATAGGGGGCCAATATAAG
* * * *
17386687 GGCCAAGCACCAGCACCCATCGTACATCATGTGCGCACACCCCCCAGCCCCCCCGATCGTCAGAA
259 GGCCAAGTACCAGCACCCATCGCACATCATGTG-ACACACCCCCCAG-CCCCCCGATCGTCGGAA
* * * * * *
17386752 CCCTAATGCCGCCGGTCAGGTTCTCTGGCGATGCTCAGGCGATGGTGCCCTGACGAAGAAAAATA
322 CCC-AATGCCGTCGGTCAGGTTCTCTGACGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATG
* * * *
17386817 CGGCTCTAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCGTCGATCCGGTCTGATCTTAGA
386 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC--C--T-CGGTCTGA---T---
* **
17386882 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAAATCATGAAA
440 C------TG-A-----TAT--TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAA
* * * * * *
17386947 CGAGCGTGCGGGCGCTTAGCCGGCCAAAGGGGC-AGATGCGTAAGCCGGGGATCAACCAGGTCCC
491 CGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA-----GGATCGA--GGGTCCC
* * * * * * * ***
17387011 CCTCTGCATGCTGTCGATCCTGCTACTGCAACCTTTGATCTGATCCGATCTTAGACTATTAATGA
549 CCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGA
* * *
17387076 ACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGGGGGCGGGCGGGCGGGCACGACGC
614 ACTCCGTATGCCTAAGCCAACCGACGAAACGA------------GCAGGCGGGCGGGCACTACGC
* * *
17387141 CGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGACAGGGTGGTAGGTGGGTGTAGGCACATCT
667 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
*
17387206 TCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
732 TCATA----TG--T-----T-CCA-TGTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * * * * *
17387271 TCACGTGAAGTTGCATGGCACGACGACTCATTTTTTATTTTTCACGATTTTCGAATCTTTTTACG
784 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACG
17387336 G
849 G
* * * * * * *
17387337 TTCGGGATTTTTTAAAATTTTTTTA-GAA---GAATTTTTGGACCTAGACTTGGTAGACATGATC
1 TTCGAGATTTTTTAAAA-TTTTTTAGGAATTTGGAGTTTT-GCCCCAAACTTGGTAGACGTGATC
* * * *
17387398 CTTTTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGATGTGAACAAGATTTTGTG
64 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* * *
17387463 ACCATTTGAAAACAGTGTCCCCATTTCAGACACTTTAATGGCAACCGGCAGCAAACCTGTAAAAT
129 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* * * *
17387528 CTCAAATGCTCTTTAAGGGAGTGTGAGTTCTTGAGGTTTGATGAGGGACAAGGGGCCAATATAAG
194 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
*
17387593 GGCCAAGTACCAGCACCCATTGCACATCATGTG-CACA-----CA-CCCCCCGATCGTCGGAACC
259 GGCCAAGTACCAGCACCCATCGCACATCATGTGACACACCCCCCAGCCCCCCGATCGTCGGAA-C
* * * * * *
17387651 CCAATGCCGTCGATCAAGTTCTC---CGA-----C---GATGGTGCCCC-AGTGAGGATAAATAC
323 CCAATGCCGTCGGTCAGGTTCTCTGACGATGCTCCGGTGATGGTGCCCCGA-CGAAGAAAAATGC
* *** * * *
17387704 GGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCTACCCGGTCTGAT-CTTAGA
387 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCTGATATTTAGA
* * *
17387768 CTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGTTCAGCCGGCCA
452 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
* * * * *
17387833 GAGGGGCGAGATGTGCAAGCCGAGGATCGGCCGGGTTCCCCT-TGGCATGCT-TCCGATCCTGCT
517 GAGGGGCGGGA--TGC--G-CAAGGATC-G-AGGGTCCCCCTCT-GCGTGCTGT-CGATCCTGCT
* * ** * * *
17387896 ACCGCAACCCTTGGT-TCGGTCTAATTTTAGATTGGGAATAAACTCCGTATGCCTAAGCCAACCG
573 GCCGCAACCCTCGGTCT-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * * *
17387960 ACGAAACGAAG-GGGCGGGTGGGCTCTACGTCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATC
637 ACGAAACG-AGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
*
17388024 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCGTTTATATGGC
701 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA--TGT---T-CC-AT---G--T-TATGGC
* * * *
17388089 TTGTAAATTCATAAAATGGTCCCTTAAGACTTCACGTGAGGTTTCATGGCAAGACGACTCCTTTT
753 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* **
17388154 TTATTTTTCACGATTTTCAAAACTTTTTACGG
818 CTATTTTTCACGATTTTTGAAACTTTTTACGG
* * ** *
17388186 TTCAAGATTTTTTAAAATTTTTTTGGAA---GGAGTTTTGGCCCCAAACTTATTAGATGTGATCC
1 TTCGAGATTTTTTAAAATTTTTTAGGAATTTGGAGTTTT-GCCCCAAACTTGGTAGACGTGATCC
17388248 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
65 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
*
17388313 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGACAGCAAACCTGTAAAATC
130 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* *
17388378 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAAGGGGCCAATATAAGG
195 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* **
17388443 GCCAAGTACCAGCACCCATCGCACATCATGT-ACGCACACCCCCCGGCCCCCCCGATCACCGGAA
260 GCCAAGTACCAGCACCCATCGCACATCATGTGA--CACACCCCCCAG-CCCCCCGATCGTCGGAA
*
17388507 CCACAATGCCGTCGGTCAGGTTCT-TCGACGATGCT-CGAGCGATGGTGCCCCGACGAAGAAAAA
322 CC-CAATGCCGTCGGTCAGGTTCTCT-GACGATGCTCCG-GTGATGGTGCCCCGACGAAGAAAAA
* * * *
17388570 TGTGGCACCAGCACGTACCCGAGCCCAGCATGTGCTGCCACAACCCTCAGTCCTGTCCGATCTTA
384 TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CC-C--T-C-G---G----T-
* * **
17388635 GACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACCCCGTATGCCTAAGTCAACCCACAA
435 --CT--G-AT---CT-GATAT--TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGA
* ** * *
17388700 AACAAGCAAGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCAGCTGGGTC
489 AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA-----GGATC-G-AGGGTC
* * * * * * *
17388765 CCCTTCTGTGTGCTATCGATCTTGCTGCCGCAACCCTTGGTCTGATCTGATCTTAGACTGGGAAT
547 CCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAAT
* *
17388830 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGA
612 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCACTACGCCGGCCAGAGA
*
17388895 CG-CGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
677 -GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA--T-
* *
17388959 TTCATGCCAATGCCATTTTTATGGCTTGTAAATTCTTACAATGGTCCCTTAAGCCTTCACGTGAA
738 GT--T-CC-ATG------TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
* * *
17389024 GTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGG
793 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGG
* * * * * * *
17389081 TTCGGGATGTTTAAAAATTTTTTTGGAA---GTAGTTTCGGCCCCAAACTTGGTAGACATGATCC
1 TTCGAGATTTTTTAAAATTTTTTAGGAATTTGGAGTTT-TGCCCCAAACTTGGTAGACGTGATCC
* * * * *
17389143 TTGTATTTTTTTTGGCAAGGACAAAAAAATTAAGCTAAAAACTCTAAGTGTACAAGATTTTGTGA
65 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
*
17389208 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACT-GCTATTGGCAGCAAACCTGTAAAAT
130 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA-TGGCTACTGGCAGCAAACCTGTAAAAT
* * * * * *
17389272 CTCAAATGCTCTTTCAGGAGGTGTGAGTTCTTGAGGTTTGATAAGAGATAGGGGGCCAGTATAAG
194 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * * *
17389337 GGCCAAGTACCAGCACCCATCGCACATCATGTGGGCACACCCCCGA-CCCCCCGATCGCCGAAAC
259 GGCCAAGTACCAGCACCCATCGCACATCATGT-GACACACCCCCCAGCCCCCCGATCGTCGGAAC
* * * * ** * * *
17389401 CCTAATGCCGCCAGTCAAGTTCTCTGACGATGCTCTGACGATGGTGCCCC-AGTGAGGAAAACTG
323 CC-AATGCCGTCGGTCAGGTTCTCTGACGATGCTCCGGTGATGGTGCCCCGA-CGAAGAAAAATG
* * * * * *
17389465 CGGCACCAGCACATGCCCGAGCCTAGCATCTGCTGCTGCAACCCTCGGTCCGGTCTGAT-CTTAG
386 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCTGATATTTAG
* * * *
17389529 ACTGGAAATGAACTCCGTATGCCTAACTCAACCCATGAAACGAGCATGCAGGCGCTCAGCCGGCC
451 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * * *
17389594 AGAGGGGCGGGATGCTCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCTTGCT-
516 AGAGGGGCGGGATGCGCAA-----GGATC-G-AGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTG
* * * * * *
17389658 CCTACAACCCCTAGTTC-GGTTCGATCTTAGACTAGGAACGAACTCCGTATGCCTAAGCCAACCG
574 CC-GCAA-CCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * * * * *
17389722 ATGAAACGAGCTAACGGGCGGCTGGGCGGGCACTATGCCGGCTACAGAGATGGGATGCACAAGCT
637 ACGAAACGAGC--A-----GGC-GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* *
17389787 GTGGGTCGATAGGGTGGTAGGTGGGTTTAAGCACAT
694 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
17389823 TGTCCCTTAA
Statistics
Matches: 5123, Mismatches: 618, Indels: 565
0.81 0.10 0.09
Matches are distributed among these distances:
842 9 0.00
843 113 0.02
844 105 0.02
845 222 0.04
846 36 0.01
847 3 0.00
848 13 0.00
849 435 0.08
850 1 0.00
851 5 0.00
854 2 0.00
855 50 0.01
856 4 0.00
857 29 0.01
858 36 0.01
859 1 0.00
860 78 0.02
861 175 0.03
862 1 0.00
863 4 0.00
865 2 0.00
866 4 0.00
867 172 0.03
868 85 0.02
869 525 0.10
870 11 0.00
871 15 0.00
872 173 0.03
873 3 0.00
874 7 0.00
875 77 0.02
876 2 0.00
877 2 0.00
878 1 0.00
879 40 0.01
880 56 0.01
881 3 0.00
882 1 0.00
883 37 0.01
884 11 0.00
885 5 0.00
886 147 0.03
887 9 0.00
888 13 0.00
889 67 0.01
890 18 0.00
891 7 0.00
892 11 0.00
893 102 0.02
894 7 0.00
895 626 0.12
896 9 0.00
897 34 0.01
898 3 0.00
899 119 0.02
900 375 0.07
901 132 0.03
902 53 0.01
903 1 0.00
904 81 0.02
905 59 0.01
906 290 0.06
907 7 0.00
909 167 0.03
910 214 0.04
911 18 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (849 bp):
TTCGAGATTTTTTAAAATTTTTTAGGAATTTGGAGTTTTGCCCCAAACTTGGTAGACGTGATCCT
TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
CCAAGTACCAGCACCCATCGCACATCATGTGACACACCCCCCAGCCCCCCGATCGTCGGAACCCA
ATGCCGTCGGTCAGGTTCTCTGACGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCA
CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCTGATATTTAGACTGG
GAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
GGCGGGATGCGCAAGGATCGAGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCG
GTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGG
CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
GGGTTTAGGCACATCTTCATATGTTCCATGTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
ACGG
Found at i:17386012 original size:26 final size:26
Alignment explanation
Indices: 17385976--17386028 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17385966 CTAGTCTGAT
17385976 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17386002 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17386028 C
1 C
17386029 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17386905 original size:26 final size:26
Alignment explanation
Indices: 17386876--17386928 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17386866 CCGGTCTGAT
17386876 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17386902 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17386928 C
1 C
17386929 CTAAGTCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17388667 original size:26 final size:26
Alignment explanation
Indices: 17388631--17388683 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17388621 CCTGTCCGAT
*
17388631 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACCCCATATG
*
17388657 CTTAGACTGGGAATGAACCCCGTATG
1 CTTAGACTGGGAATGAACCCCATATG
17388683 C
1 C
17388684 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCATATG
Found at i:17391223 original size:26 final size:25
Alignment explanation
Indices: 17391183--17391234 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
17391173 CTGATTCGAT
*
17391183 CTTAGACTGGAATGAACTCCGTATG
1 CTTAGACGGGAATGAACTCCGTATG
17391208 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGAC-GGGAATGAACTCCGTATG
17391234 C
1 C
17391235 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (25 bp):
CTTAGACGGGAATGAACTCCGTATG
Found at i:17391404 original size:851 final size:838
Alignment explanation
Indices: 17389002--17392232 Score: 3507
Period size: 833 Copynumber: 3.8 Consensus size: 838
17388992 TCTTACAATG
* * *
17389002 GTCCCTTAAGCCTT-CACGTGAAGTTT-CATGGCAAGACGACTCATTTTCTATTTTTCATGATTT
1 GTCCCTTAAGCCTTACATGT-AAGTTTACATGGCAAGACCACTCGTTTTCTATTTTTCATGATTT
* * * * * * * * *
17389065 TTGAAACTTTTTGCGGTTCGGGATGTTTAAAAATTTTTTTGGAAGTAGTTTCGGCCCCAAACTTG
65 TTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTCTGCCCAAAACATG
* * * * *
17389130 GTAGACATGATCCTTGTATTTTTTTTGGCAAGGACAAAAA-AATTAAGCTAAAAACTCTAAGTGT
130 GTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAACAATTCAGCT-AAAACTCGAAGTGT
*
17389194 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-AGACACTTTAACT-GCTATTGGCA
194 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCGA-ACACTTTAA-TGGCTACTGGCA
* * * *
17389257 GCAAACCTGTAAAATCTCAAATGCTCTTT-CAGGAGGTGTGAGTTCTTGAGGTTTGATAAGAGAT
257 GCAAACCTGTAAAATCTCAAATGCTCTTTAAAGG-GGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* * * ** *
17389321 AGGGGGCCAGTATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGGGCACA-CCCCC-GAC
321 AGGGGGTCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCTTGTGCACACACCCCCCGGGC
* * * *
17389384 CCCCCGATCGCCGAAAC-CCTAATGCCGCCAGTCAAGTTCTCTGACGATGCTCTGACGATGGTGC
386 CCCCCGATCGTCGAAACTCC-AATGCCGTCGGTCAGGTTCTC---CG--G---TG-CGATGGTGC
* * * * * * * *
17389448 CCC-AGTGAGGAAAACTGCGGCACCAGCACATGCCCGAGCCTAGCATCTGCTG-CTGCAA-CC-C
441 CCCGA-CGAAGAAAAATGCAGCACTAGCACATGCCCGAGCCCAGCATGTGCTGTC-GTAACCCTC
* *
17389509 --TC-G----G-TC-----C-GG--T---CT--G-AT-CTTAGACTGGAAATGAACTCCGTATGC
504 AGTCTGATCCGATCTTAGACTGGAATGAACTCCGTATGCTTAGACAGGGAATGAACTCCGTATGC
* * *
17389551 CTAACTCAACCCATGAAACGAGCATGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATGCTCAAGCC
569 CTAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
* * * * *
17389616 GGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCTTGCTCCTACAACCCCTAGTTCGGTTCG
634 GGGGATCGATCGGGTCCCCCTCTGTGTGCTGCCGATCTTGCTCC-GCAACCTC-GGTTCGGTTCG
* * * * ** *
17389681 ATCTTAGACTAGGAACGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCTA-ACGGGCGGCT
697 ATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAACGAGC-AGGCAAGCGG-A
* * * * * *
17389745 GGGCGGGCACTATGCCGGCTACAGAGATGGGATGCACAAGCTGTGGGTCGATAGGGTGGTAGGTG
760 GGGCAGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTG
17389810 GGTTTAAGCACATT
825 GGTTTAAGCACATT
* * *
17389824 GTCCCTTAATCCTT-CATGTAAGTTTACATGGCAAGACCACTCGTTTTCTA-TTTCCAT-AATTT
1 GTCCCTTAAGCCTTACATGTAAGTTTACATGGCAAGACCACTCGTTTTCTATTTTTCATGATTTT
* *
17389886 TGAAACTTTTTACGGTTCGAGA--TTTTAAAATTTTTTCGAAAGGAGTTT-TGCCCCAAAACTTG
66 TGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTCTG-CCCAAAACATG
* *
17389948 GTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAACAATTCAGCTAAAACTCGAAGTGTA
130 GTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAACAATTCAGCTAAAACTCGAAGTGTA
* *
17390013 CAAGATTTTGTGATCATTTGAAAAAAGTGTCCCCATTTTCTG-ACACGTTTAATGGCTACTGGCG
195 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTTC-GAACAC-TTTAATGGCTACTGGCA
* *
17390077 GC-AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGATA
257 GCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * * * ** *
17390141 AGGGGCCAATATAAGGGCCAGGTACCAGCACCCATCGCACATCATGTG--TGCACCCCCCGGTCC
322 GGGGGTCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCTTGTGCACACACCCCCCGGGCC
* * * * *
17390204 CCCCGATCGTCGGAACCCCAATGCCATCGGTCAGGTTCTCCGGT--GATGG-GCCGC-AGTGAAG
387 CCCCGATCGTCGAAACTCCAATGCCGTCGGTCAGGTTCTCCGGTGCGATGGTGCCCCGA-CGAAG
* * * * *
17390265 AAAAATGCGGCAAC-AGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCG
451 AAAAATGCAGC-ACTAGCACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCAGTCTGATCCG
* * * *
17390329 ATCTTAGGCTATGAATGAACTCCGTACGCTTAGACTA-GGAATGAACTCCGAATGCCTAAGTCAA
515 ATCTTAGACT-GGAATGAACTCCGTATGCTTAGAC-AGGGAATGAACTCCGTATGCCTAAGTCAA
* ** * * *
17390393 CCCAAGAAACGATTGTGCAGGCGCTCAGCCGACCAGAGGGGTGGGATGCGCAAGTCGGGGATCGA
578 CCCATGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA
* * * * *
17390458 CCGGGTCCCCCTCTGTGTGCTGCCGATTTTACTGTCGTAACCCTCGGTTCGGTTCGATCTTAGAC
643 TCGGGTCCCCCTCTGTGTGCTGCCGATCTTGCT-CCGCAA-CCTCGGTTCGGTTCGATCTTAGAC
* *
17390523 TGGGAATGAACT-TCGTATGCCTAAGCCAACCGACGAAATGAGCAGGCAAGCGAGAGGGCAGGCA
706 TGGGAATGAACTCT-GTATGCCTAAGCCAACCGATGAAACGAGCAGGCAAGCG-GAGGGCAGGCA
*
17390587 CTATGCCGGCCAGAGAGACGGGATGCGCAAGTTGTGGATCGATAGGGTGGTAGGTGGGTTTAAGC
769 CTATGCCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAAGC
*
17390652 ACATG
834 ACATT
*
17390657 GTCCCTTAAGCCTTCACATG-AAGTTT-CATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
1 GTCCCTTAAGCCTT-ACATGTAAGTTTACATGGCAAGACCACTCGTTTTCTATTTTTCATGATTT
* **
17390720 TTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTCTGCCCTGAACATG
65 TTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTCTGCCCAAAACATG
*
17390785 GTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAGAATTCAGCTAAAAGCTCGAAGTGT
130 GTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAACAATTCAGCTAAAA-CTCGAAGTGT
* * *
17390850 ACAAGATTTTTTGACCATTCGAAAAAAGTGTCCCTATTTCGAACACTTTAATGGCTACTGGCAGC
194 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCGAACACTTTAATGGCTACTGGCAGC
* *
17390915 AAACCTGTAAAGTCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGG
259 AAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
*
17390980 GGGTAAATATAAGGGCCAAGTACCAGCACCCATCGCACATCTTGTGCACACACCCCCTCGGGCCC
324 GGGTCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCTTGTGCACACACCCCC-CGGGCCC
17391045 CCCGATCGTCGAAACTCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCAGCGATGGTGCCCC
388 CCCGATCGTCGAAACTCCAATGCCGTCGGTCAGGTTCT-C--CG--G-T---GCGATGGTGCCCC
* * *
17391110 GACGAAGAAAAATTCAGCACTAGCACATGCCCGAGCCCAGCATGAGCTATCGTAACCCTCAGTCT
444 GACGAAGAAAAATGCAGCACTAGCACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCAGTCT
*
17391175 GATTCGATCTTAGACTGGAATGAACTCCGTATGCTTAGACAGGGAATGAACTCCGTATGCCTAAG
509 GATCCGATCTTAGACTGGAATGAACTCCGTATGCTTAGACAGGGAATGAACTCCGTATGCCTAAG
* * * * *
17391240 TCAACCTATGAAACGAACGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGA
574 TCAACCCATGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
* *
17391305 TCGATCGGGTCCCCCTCTGTGTGCTGTCGATCCTGCTACCGCAACCTTCGGTTCGG-TCTGATCT
639 TCGATCGGGTCCCCCTCTGTGTGCTGCCGATCTTGCT-CCGCAACC-TCGGTTCGGTTC-GATCT
* * *
17391369 TAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAACGAGCGGGTAAGCGGACGGGTA
701 TAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAACGAGCAGGCAAGCGGA-GGGCA
* * * * *
17391434 GGCACTACGCCGGCCGGAGAGACGGGATGCGCAGGCCGTGGATCGATAGGGTTGTAGGTGGGTTT
765 GGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTT
*
17391499 AGGCAATCTTCATATTTCT
830 AAGC-A----C--A--T-T
* *
17391518 GCTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTTAGCCTTCACGTGAAG
1 G--T--C----CC----TTA-AGC---------CTTAC-AT-G------TA------A-GT----
* * *
17391583 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGGTC-AGGAT
25 TTACATGGCAAGACCACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGA-GAT
* *
17391647 TTTTTAAAATTTTTTCGGAAGGAGTTTCGGCCCCAAACATGGTAGACATGATCCTTGTATTTTTG
89 TTTTTAAAATTTTTTCGGAAGGAGTTTCTGCCCAAAACATGGTAGACATGATCCTTGTATTTTTG
* *
17391712 TTGGCATGCAC-AAACCAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
154 TTGGCATGCACAAAAACAATTCAGCT-AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
*
17391776 AAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
218 AAAGTGTCCCCATTTCGAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
17391841 TTT-AAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGG-TCAGGGGGTCAATATAAGGGCCAAGTA
283 TTTAAAG-GGGTGTGAGTTCTCGAGGTTTGATGAGGGAT-AGGGGGTCAATATAAGGGCCAAGTA
* * *
17391904 CCAGTACCCATCACACATCTTGAGTGCACAC-CCCCCC-GGCCCCCTCGATCG-CCAGAACTCCA
346 CCAGCACCCATCGCACATCTT--GTGCACACACCCCCCGGGCCCCC-CGATCGTCGA-AACTCCA
* *
17391966 ATACCGTCGGTCATGTTCTCC-G-GCGATGGTGCCCCGACGAAGAAAAATGCAGCACTAGCACAT
407 ATGCCGTCGGTCAGGTTCTCCGGTGCGATGGTGCCCCGACGAAGAAAAATGCAGCACTAGCACAT
** *
17392029 GCCCGAGCCCAGCATGTGCTGTTATAACCCTCAGCCTGATCCGATCTTAGACTGGAATGAACTCC
472 GCCCGAGCCCAGCATGTGCTGTCGTAACCCTCAGTCTGATCCGATCTTAGACTGGAATGAACTCC
* * * *
17392094 GTATGCTTAGATAGGGCATGAACTCCGTATGCCTAAGTCAACCCATTAAACGAGCGTGCGGGCGC
537 GTATGCTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGC
* * ** **
17392159 TCAGCCAGCCAGAGGGGTGGGATGCATAAGCCGGGGATCGATCGGGTCCCCCTCTGTGTGCTAAC
602 TCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGTGTGCTGCC
17392224 GATCTTGCT
667 GATCTTGCT
17392233 GTCACACCCC
Statistics
Matches: 2067, Mismatches: 203, Indels: 209
0.83 0.08 0.08
Matches are distributed among these distances:
807 50 0.02
808 10 0.00
809 1 0.00
811 3 0.00
812 1 0.00
814 1 0.00
816 3 0.00
817 5 0.00
818 122 0.06
819 151 0.07
820 43 0.02
821 12 0.01
822 40 0.02
824 1 0.00
826 1 0.00
829 2 0.00
831 1 0.00
832 2 0.00
833 285 0.14
834 17 0.01
835 29 0.01
836 19 0.01
837 193 0.09
838 44 0.02
839 7 0.00
840 41 0.02
841 1 0.00
843 2 0.00
845 1 0.00
846 1 0.00
850 7 0.00
851 275 0.13
852 71 0.03
853 1 0.00
856 1 0.00
858 1 0.00
860 1 0.00
861 1 0.00
863 1 0.00
865 1 0.00
869 2 0.00
873 3 0.00
874 2 0.00
882 2 0.00
883 4 0.00
884 1 0.00
891 225 0.11
896 1 0.00
897 1 0.00
898 2 0.00
899 1 0.00
901 14 0.01
902 213 0.10
903 139 0.07
904 8 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (838 bp):
GTCCCTTAAGCCTTACATGTAAGTTTACATGGCAAGACCACTCGTTTTCTATTTTTCATGATTTT
TGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTCTGCCCAAAACATGG
TAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAACAATTCAGCTAAAACTCGAAGTGTAC
AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCGAACACTTTAATGGCTACTGGCAGCAA
ACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
GTCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCTTGTGCACACACCCCCCGGGCCCCCC
GATCGTCGAAACTCCAATGCCGTCGGTCAGGTTCTCCGGTGCGATGGTGCCCCGACGAAGAAAAA
TGCAGCACTAGCACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCAGTCTGATCCGATCTTA
GACTGGAATGAACTCCGTATGCTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAA
ACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCC
CCCTCTGTGTGCTGCCGATCTTGCTCCGCAACCTCGGTTCGGTTCGATCTTAGACTGGGAATGAA
CTCTGTATGCCTAAGCCAACCGATGAAACGAGCAGGCAAGCGGAGGGCAGGCACTATGCCGGCCA
GAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAAGCACATT
Found at i:17392102 original size:25 final size:25
Alignment explanation
Indices: 17392074--17392125 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 25
17392064 CTGATCCGAT
17392074 CTTAGACT-GGAATGAACTCCGTATG
1 CTTAGA-TAGGAATGAACTCCGTATG
*
17392099 CTTAGATAGGGCATGAACTCCGTATG
1 CTTAGATA-GGAATGAACTCCGTATG
17392125 C
1 C
17392126 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
24 1 0.04
25 6 0.25
26 17 0.71
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (25 bp):
CTTAGATAGGAATGAACTCCGTATG
Found at i:17392417 original size:26 final size:26
Alignment explanation
Indices: 17392388--17392440 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17392378 CCGATCCAAT
*
17392388 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
*
17392414 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
17392440 C
1 C
17392441 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:17393302 original size:25 final size:25
Alignment explanation
Indices: 17393274--17393325 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 25
17393264 CTGATCCGAT
17393274 CTTAGACT-GGAATGAACTCCGTATG
1 CTTAGA-TAGGAATGAACTCCGTATG
*
17393299 CTTAGATAGGGCATGAACTCCGTATG
1 CTTAGATA-GGAATGAACTCCGTATG
17393325 C
1 C
17393326 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
24 1 0.04
25 6 0.25
26 17 0.71
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (25 bp):
CTTAGATAGGAATGAACTCCGTATG
Found at i:17394892 original size:26 final size:26
Alignment explanation
Indices: 17394863--17394913 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17394853 CGATCCGATC
* *
17394863 TTAGACTGCGAATGAACTCCGTATGA
1 TTAGACGGCGAATAAACTCCGTATGA
17394889 TTAGACGGCGAATAAACTCCGTATG
1 TTAGACGGCGAATAAACTCCGTATG
17394914 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (26 bp):
TTAGACGGCGAATAAACTCCGTATGA
Found at i:17395315 original size:26 final size:26
Alignment explanation
Indices: 17395286--17395335 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
17395276 TTTTTTATTT
*
17395286 TTCACGATTTTTGAAACTTTTTTCAA
1 TTCACGATTTTTGAAAATTTTTTCAA
* *
17395312 TTCAGGATTTTTTAAAATTTTTTC
1 TTCACGATTTTTGAAAATTTTTTC
17395336 GGAAGGATTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.26, C:0.12, G:0.08, T:0.54
Consensus pattern (26 bp):
TTCACGATTTTTGAAAATTTTTTCAA
Found at i:17395785 original size:26 final size:26
Alignment explanation
Indices: 17395756--17395808 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17395746 CCGGTCCGAT
* *
17395756 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCATATG
*
17395782 CTTAAACTGGGAATGACCTCCATATG
1 CTTAAACTGGGAATGAACTCCATATG
17395808 C
1 C
17395809 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCATATG
Found at i:17397306 original size:26 final size:26
Alignment explanation
Indices: 17397277--17397329 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17397267 CCGGTTTGAT
17397277 CTTACACTGGCAATGAACTCCGTATG
1 CTTACACTGGCAATGAACTCCGTATG
* * *
17397303 CTTAGACTGGGAATGAACTTCGTATG
1 CTTACACTGGCAATGAACTCCGTATG
17397329 C
1 C
17397330 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTGGCAATGAACTCCGTATG
Found at i:17398206 original size:26 final size:26
Alignment explanation
Indices: 17398168--17398218 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17398158 CTGATCTGAT
*
17398168 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
17398194 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTAGGAATGAACTCCGTAT
17398219 ATCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17399102 original size:26 final size:26
Alignment explanation
Indices: 17399073--17399125 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17399063 CCAGTCCGAT
17399073 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
17399099 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
17399125 C
1 C
17399126 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:17399338 original size:905 final size:901
Alignment explanation
Indices: 17396915--17408091 Score: 13679
Period size: 891 Copynumber: 12.5 Consensus size: 901
17396905 GTTTTATACC
* * * *
17396915 CAAAAAAATTAAGCTAAAAACTCTAAGTGTAGAAGATTTTGTGACCATTTGAAAGAAGTGTCCCC
1 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* * * * * *
17396980 ATTTCACACACTTTAACGGCTACTGGTAGCAAACTTGTAAAATCTTAAATGCTCTTTGAGGGGGT
66 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* * *
17397045 GTGACTTCTCAAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAATACCAGCACCCATCG
131 GTGAGTTCTCGAGGTTTGATGAGGGAT-AGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* ** * * *
17397110 CACATCATGTGCGCACACCCCCCGGCCCCCCTGATCGTCAGAACCTGAATGCCGTCAGTTAGGTT
195 CACATCATGTGCGCACACCCCCCGGCCCCCC-GATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
* * * * * * *
17397175 CTCTGACGATGCTCCGGCGATAGTGCCCCGATGAAGAAAAATGCTGCACTAGCACATGCCTGAGC
259 CTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
** * * ** * *
17397240 CCAGCATGTGCTGCCGTGACCCTCAGTCCGGTTTGATCTTACACTGGCAATGAACTCCGTATGCT
324 CCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * * * *
17397305 TAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACAAACGTGCGGGTGCTCAGCCA
389 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * **
17397370 GCCAGAGGTGTGGGGTGCGCAAGCC-AGGATCGGCCATGTCCCCCTCTGCGTGCT----A-CC-G
454 GCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTG
* * *
17397428 -T-----AACCCTCAGTC-GAGTCTGATCTTAGGCTGGGAATGAACTCCATATGCCTAAGCCAAC
519 CTGCCACAACCCTCGGTCTG-GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * *
17397486 CGACGAAACGAGCGGGCGGGCGGGCGGGC-AGGCACTACGTCAGCCAAAGAGACGGGATGAGCAA
583 CGACGAAACGAGCGGGCGGGCGGGCGGGCGA-GCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* * * *
17397550 GCCGTGAATCGTTAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCA
647 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA
* *
17397615 ATTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGAC
712 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
17397680 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAAGGTTCGAGATTTTTTAAAATTTTTT
777 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
** *
17397745 C-AGAAGGAGTTTTGGTACCAAACTTGGTAGACGTGATCCTTGTACTTTTGTTGGCATGCA
842 CGA-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
*
17397805 CAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
1 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* *
17397870 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCCTTAAGAGGGT
66 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* * *
17397935 GTGAGTTCTTCGAGATTTGATGAGGGACAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATT
131 GTGAGTTC-TCGAGGTTTGATGAGGGA-TAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
*
17398000 GCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGT
194 GCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGT
* * * * * * *
17398065 TGTCCGACGATGCTCC-AGCCATGGTGCCTCGGCAAAGAAAATTGTGGCACCAGCACATGCCCGA
258 TCTCCGACGATGCTCCGA-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGA
* * * * * * *
17398129 ACCCAGCATGTGCTACCGCAACCCTCAGT-CTGATCTGATCTTAGACTAGGAATGAACTTCGTAT
322 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCAG-TCCGATCTTAGACTGGGAATGAACTCCGTAT
** * * *
17398193 GCTTAGACTGGGAATGAACTCCGTATATCTAAGTCAACCCACAAAACGAGCGTACGGGCGCTCAA
386 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* *** * * * * * * * *
17398258 CCGTCCAGAGGGGTATGATGTGTAAGTCGAGGAGCGGCTGGGTCCCCCTCTACATGCTACCGATC
451 CCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATC
17398323 CTGCTGCCACAACCCTCGGT-TCGGTCTGATCTTCA-ACTGGGAATGAACTCCGTATGCCTAAGC
516 CTGCTGCCACAACCCTCGGTCT-GGTCTGATCTT-AGACTGGGAATGAACTCCGTATGCCTAAGC
** *
17398386 CAACCGACGAAACGAGCGGGCAAGCGGGCGGGC-AGGCACTACGTCGGCCAGAGAGACGGGATGT
579 CAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGA-GCACTACGTCGGCCAGAGAGACGGGATGC
* *
17398450 GCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
643 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAAT
*
17398515 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCA
708 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* *
17398580 AGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAAT
773 AGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATT
* * *
17398645 TTTTCGAAAGGAGTTTTGGTCCCAAAATTGGTAGAAGTGATCCATT-TATTTTT-TTGGCATGCA
838 TTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC-TTGTATTTTTGTTGGCATGCA
* * *
17398708 TAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGGTTTCCC
1 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA-GTGTCCC
* *
17398773 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTGAAATGCTCTTTAAGGGGC
65 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* *
17398838 TGTGATTTCTCGAGGTTTGATGAGGGATAGGGAGCCAATATAAGGGCCAGGTACCAGCACCCATC
130 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGG-GCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * * * *
17398903 GCACATCATGTGCGCACACCCCCCTCGGCACCTCCGATTGTCGAAACCCCAATGTCGTCAGTCAG
194 GCACATCATGTGCGCACA-CCCCC-CGGC-CCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAG
* * * * * *
17398968 GTTCTCCGATGATGCTCTGACGTTGGTGCCCCGACAAAGAAAAATGCGACACCAGCACATGCTCG
256 GTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCG
* * ** *
17399033 AGCCCAGTATGTGCTGCAGCAACCCTTAGTCCAGTCCGATCTTAGACTGAGAATGAACTCCGTAT
321 AGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * * *
17399098 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCAGGCGCTCAG
386 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
17399163 CCGGCCAGAGGGGCAGGATGCGCAAGCCAAGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATC
451 CCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATC
* * ** *
17399228 CTGCTGCCACAACCCTTGGTCCGGTCCAATCTTAGACTGGGAATTAACTCCGTATGCCTAAGCCA
516 CTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
17399293 ACCGATGAAACGAGCGGGCGGGCGGGCGGGCGAACACTTCGTCGGCCAGAGAGACGGGATGCGCA
581 ACCGACGAAACGAGCGGGCGGGCGGGCGGGCGAGCACTACGTCGGCCAGAGAGACGGGATGCGCA
* * * * * * * * *
17399358 CGTCATGGATAGGTAGGGTTGTTGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCC
646 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
* * *
17399423 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATTAAGTTTCAAGGCAAGA
711 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * *
17399488 CGACTCGTTTTCTATTTTTCAAGATTTTCGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT
776 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
** * *
17399553 TC-AGAAGGAGTTTTGAACCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGCCATGCA
841 TCGA-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* * * *
17399614 TAAAAAAACTCAGCTAAAAACTCAAAGTGTACAAGACTTTGTGACCATTTGAAAAAAGTGTCCCC
1 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
17399679 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
66 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* * *
17399744 GTGAGTTCTCGAGGTTTGATTAGGGATAAGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGC
131 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * *
17399809 ACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGACCCCCAATGCCGTCGGTCAGGTTC
196 ACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
* * * *
17399874 TCCAACGATGCTCCGGCGATGGAGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCC
260 TCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * * *
17399939 CAGCATGTGCTGTCGTAACCCTCGGTCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTT
325 CAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * *
17400004 AGACT-GGAATGAACTCCGTATGCCTAACTCAACCCACGAAACGAGCATGCGGGCGTTCAGCCGG
390 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* *
17400068 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCTGGTCCCCCTCTGCGTGCTGCCGATCCTGC
455 CCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGC
* * * ** * * * * *
17400133 TACTACAACCCTCGGTCCGGTCCAATCTTATACTGGGAATGAACTCTGTATACCTAAGCTAACTG
520 TGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
**
17400198 ACGAAACGA--------GCGGGCGGGC-ATTAC-AC--CGGCCAGAGAGACGGGATGCGCAAGCC
585 ACGAAACGAGCGGGCGGGCGGGCGGGCGAGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
* * *
17400251 TTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAGTGCCATTT
650 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTT
*
17400316 TTATGGCTTGCAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
715 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* ** *
17400381 TCATTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAA-TTTTTCGA
780 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGA
*
17400445 AAGCAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
845 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* *
17400502 AAAAAATAATTCAGCTCAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
1 CAAAAA-AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* * *
17400567 TATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGG
65 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* *
17400632 TATGAGTTCTTGAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
130 TGTGAGTTCTCGAGGTTTGATGAGGGATAG-GGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * *
17400697 GCACATCATGTGCGCACATCCCCCGGCCCCCCCGATCG-CTGGAACCCCAATGCTGCCAGTCAGG
194 GCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAGG
* * * * ** * *
17400761 TTCTCTGGCGATACTTCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCTGA
257 TTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGA
* * * * *
17400826 GCCCAGCATGTG-TGGCCGCAACCTTCGGTCCGGTCTGATCTTCGACTGGGAATGAACTCTGTAT
322 GCCCAGCATGTGCT-GCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * * *
17400890 GCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAA
386 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * *
17400955 CCGGCCAAAGGGGCAGGATAC-CTAAGCCGAGGATCAGTCGAGTCCCCCTCTGTGTGCTGCCAAT
451 CCGGCCAGAGGGGCGGGATGCGC-AAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGAT
* * * ** * *
17401019 CGTACTGTCGTAACCCTCGGTCTGGTCTAATGTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
515 CCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * *
17401084 AACCGACG-AACGAGCGGGCGGGCGGGCAGGCG-GACACTACGTCGACCAGAGAGACAGGATGTG
580 AACCGACGAAACGAGCGGGCGGGCGGGCGGGCGAG-CACTACGTCGGCCAGAGAGACGGGATGCG
* * * *
17401147 AAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCAAATG
644 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATG
*
17401212 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCGTCACGTGAAGTTTCATGGCAA
709 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
** * *
17401277 GACGACT-GATTTTCTA-TTTTCATGATTTTTGAAACTTTTTGTGGTTCAGGAGTTTTTAAAA-T
774 GACGACTCG-TTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATT
*
17401339 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTGTTGGCATGCA
838 TTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* * *
17401402 AAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTAACCTTTTGAAAAAAGTGTCCCC
1 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
*
17401467 ATTTCAGACACTTTAATGGCTACTGGCAGC-AACCTGTAAAATCTCAAATGCTGTTT-AGGGGGT
66 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* ** * *
17401530 GTGAGTTCTCCAGGTTTGATGAGGGATAGGGGGTGAATATAAGGGTCAAGTACCAACACCCATCG
131 GTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* ** ** *
17401595 CACATCATGTGCACACACCCCCCGGCCCTTCGATCACCGAAACCCCAATGCCGCCGGTCAGGTTC
195 CACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
* * * * * * * *
17401660 TCC-AGTGATGCCCCAACGATGGTGACCCGACGAAGAAATATGTGGCACCAGCATAAGCCCGAGC
260 TCCGA-CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * *
17401724 CCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTGGACTGGGAATGAACTCCATCTGCT
324 CCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * * * * *
17401789 TAGACTGTGAATGAACTCCGTATGCCTAAGTCAACCCATGGAACGAGCGTGCGGGTGCTCAACTG
389 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* ** * * **
17401854 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCAACCGGGTCCTCCTCTACGTGCTATCGATCCTG
454 GCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTG
** ** * * * *
17401919 CTATCGTAACCCTCAGTCTGGTCCGATCTTAGA-TAGGGAATGAACTTCATATGCCTAAGCCAAC
519 CTGCCACAACCCTCGGTCTGGTCTGATCTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * *
17401983 TGACGAAACAAGC-GGCGAGCGTGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGTGCAAG
583 CGACGAAACGAGCGGGCGGGCGGGCGGGCGAGCACTACGTCGGCCAGAGAGACGGGATGCGCAAG
* *
17402047 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCAT
648 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
* * * * * *
17402112 TTTTATGGTTTGTAAATTCATGCAATGATCCCTTACGCCTACGCGTGAAGTTTCATGGCAAGACG
713 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * *** *
17402177 ACTCCTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAAATTTTTGAAAATTTTTTC
778 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
*
17402242 GAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTT-TTGGCATGCA
843 GAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
** * * *
17402300 CAAAAAAATTTTGCTAAAAACTTGAAGTGCACAAGATTTTGTGACCATTTGAAAGAAGTGTCCCC
1 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
*
17402365 AATTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
66 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
*
17402430 GTGAGTTCTCGAGGTTTGATGAGGGATAGCGGGCCAATATAAGGGCCAAGTACCAGCAGCCATCG
131 GTGAGTTCTCGAGGTTTGATGAGGGATAG-GGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * * *
17402495 CACATCTTGTGCGCACACCCCCCCGGTCCGCCTGATCG-CTGGAACCTCAATGCTGCCGGTCAGG
195 CACATCATGTGCGCACA-CCCCCCGG-CCCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAGG
*
17402559 TTCTCCGACGA---T--G--GA----GCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGA
257 TTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGA
* *
17402613 GCCCAGCATGTG-TGGCTGCAA-CC-C--T----T--GATC-----C--GG--T----T-TG-AT
322 GCCCAGCATGTGCT-GCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * *
17402652 -CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTCAA
386 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * ** *
17402716 CCGGCCAGAGGGGTGGGATGCGCAAGTCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCAATC
451 CCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATC
* ** * * * * *
17402781 CTACTATCGCAACCCTTGGTTTGGTCTGATATTAGACTGGGAATGAACTCCGTATACCTAAGCCA
516 CTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * *
17402846 ACCGACGAAACGATCGGGCAGGCGGCCGGGC-AGGCACTACGCCGGCCAGAGAAATGTGATGCGC
581 ACCGACGAAACGAGCGGGCGGGCGGGCGGGCGA-GCACTACGTCGGCCAGAGAGACGGGATGCGC
* * *
17402910 AAGCCATGGATCGATAGGGTGGTAGGTGGCTTTAGGCACATCTTCATATTTCTACGTGCCAATGC
645 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGC
17402975 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
710 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * *
17403040 ACGACTCGTTTTCTATTTTTCATGCTTTTTAAAACTTTTTACGGCTCAGGATTTTTTAAAATTTT
775 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
* * *
17403105 TTCGGAAGGA-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGTATTCA
840 TTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* * * *
17403166 AAAAAAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTTTGACCATTTGAAAAAAGTGTCCCA
1 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
17403231 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
66 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
*
17403296 GTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
131 GTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * * *
17403361 CACATCATGTGCGCTCACCCCTCGGCCCCCTCGATCG-CTAGAACCCCAATGTCGCCAGTCAGGT
195 CACATCATGTGCGCACACCCCCCGGCCCCC-CGATCGTC-GGAACCCCAATGCCGCCGGTCAGGT
* * *
17403425 TCTCC-AGCGATGCTCCGATGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGA
258 TCTCCGA-CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGA
* * * *
17403489 GCCCAGCATGTGCTGTCGTAACCCTCGCTCC-GATCTGATCTTAGAC-GGG-ATGCGTAAGC-CG
322 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCAG-TCCGATCTTAGACTGGGAAT--G-AA-CTC-
* * * * ** * * ** ** * ***
17403550 TGGATCGATAGGTTGGTAGGTGGGTTTGGTCACATCTTCATATTTCTGTGTGCCAATGCCATTTT
381 -CG-T--AT-GCTTAG-A-CTGGGAAT-G--A-A-CTCCGTATGCCTAAGT--CAA-CCCA-CGA
* * * ***** ** * *** * * * * **
17403615 TATG-GC-T-TGTAAATTCA----TACA-AGGGTCCCTTAAGCCTTCACG-TGAAGTTTCGG-CG
430 AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG-GCGGGATG-C-GCAAGCCG-AGGATCGGCCG
* * * * * * * *
17403670 ATGGTGCCCCGGTGATGC-T-CTGGCGA---TGGTGTCGCAACCCTCAGTCTGGTCAGATCTTAG
491 --GGT-CCCC-CT-CTGCGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAG
* * * * * * * *
17403730 ACTGGGAATGAACTTCGTATTCCTAAGCCCACTGACGAAATGAGTGGGCGGGCGGGTGGGCGGGC
551 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGAGC
* * * * * *
17403795 ACTACGCCGGCCAGGGAGACGGGATGTGCAAGCCATGGATCGATAGGTTGGTAGGTGGGTTTGGG
616 ACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* *
17403860 TACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT-CCT
681 CACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
*
17403924 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTGGAAACT
746 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACT
* * * * * *
17403989 TTTTGCAGTTTGGGATTTCTTAAACTTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
811 TTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
17404054 GATCCTTGTATTTTTGTTGGCATGCA
876 GATCCTTGTATTTTTGTTGGCATGCA
17404080 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
1 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
17404145 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
66 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* **
17404210 GTGAGTTCTTGAACTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
131 GTGAGTTCTCGAGGTTTGATGAGGGATAGG-GGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * *
17404275 CATATCATGT--GCACA-ACCCC-GCACCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTT
195 CACATCATGTGCGCACACCCCCCGGC-CCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
* *
17404336 CTCCGACGATGCTCCGACGATGGTGCCACGAACGAAGAAAAATGCGGCACCAGCACATGCCCAAG
259 CTCCGACGATGCTCCGACGATGGTGCCCCG-ACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* * *
17404401 CCCAGCATGTGCTGCTGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGC
323 CCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
* ** * *
17404466 TTAGACTGGGAATGAACTTCGTATGCCTAAGTGTACCCACAAAACGATCGTGCGGGCGCTCAGCC
388 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * * ** *
17404531 AGCTAGAGGGGTGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCTCTCTATGTGCTGCCAATCCT
453 GGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCT
* ** *
17404596 GCTGCCACAACCCTTGGTCCAGTCTGATCTTAGACTGGGAATGAATTCCGTATGCCTAAGCCAAC
518 GCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* **
17404661 CGACGAAACGA----GCGGGTGGGC--G-G-GCACTACGTCGGCCAGAGAGATAGGATGCGCAAG
583 CGACGAAACGAGCGGGCGGGCGGGCGGGCGAGCACTACGTCGGCCAGAGAGACGGGATGCGCAAG
* * *
17404718 CCATGGATCGATAGGGTGGTAGG-GGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGACAT
648 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
17404782 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
713 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
** * *
17404847 ACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTAGGGTTCAGGATTTTTTAAAATTTTTTC
778 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
* * * * *
17404912 CAAAGGAGTTTTGACTCCAAACTTGGTAGACGTAATCCTTGTATTTTTTTTGGCATGCA
843 GAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* **
17404971 CAAAAAAATTCAGCTAAAAACTCGAAGTATACAAGATTTTGTGACCATTTGAAAAAAGTGTTTCC
1 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* *
17405036 ATTTCAGACACTTTAATTGCAACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
66 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* ** *
17405101 CTGAGTTCTCGAGGTTTGACAAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
131 GTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * *
17405166 CACATCAAGTACGCAAACCCCCCCGGCCCCCTCGATCGTCGGAACCCCAATGCCGCCGGTCAGGT
195 CACATCATGTGCGCACA-CCCCCCGGCCCCC-CGATCGTCGGAACCCCAATGCCGCCGGTCAGGT
** * **
17405231 TCT----C--TG----G-CGATGGTGCCCCGGTGAAGAAAACTATGGCACCAGCACATGCCCGAG
258 TCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* * * * *
17405285 CCCAGCATGTGCTGCCACAACCCTCGGTCC-GATCGGATCTTTGACTGGGAGTGAACTCCATATG
323 CCCAGCATGTGCTGCCGCAACCCTCGGTCCAG-TCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * * * * *
17405349 ATTAGACTAGGAATGAACTCCATATGCCTATGTCAACCCACGGAATGAACG-GTGGGCGCTCAAC
387 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
17405413 CGACCAAAGGGGCGGGATGCGTAAGCATG-GGATTGGCCGGGTCCCCCTCTGCATGCTGTCGATC
452 CGGCCAGAGGGGCGGGATGCGCAAGC-CGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATC
** * * * * * * * * *
17405477 CTAATACCACAACCCTCAGTCTGATCTAATCTAAGACTGTGAATAAACTCCGTATGCCTAGGCCC
516 CTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
17405542 ACCGACGAAATGA--------GC-GG-GTG-G-GCACTATGTCGGCCAGAGAGACGGGATGCACA
581 ACCGACGAAACGAGCGGGCGGGCGGGCGGGCGAGCACTACGTCGGCCAGAGAGACGGGATGCGCA
* * * *
17405595 AGCCGTGGATCGATAGGTTGGTAGGTGGGTTTGGGCACATCTTCATATTTTTGTGTGCCAATGCC
646 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
17405660 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
711 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* ** *
17405725 CGACTCGTTTTCTATTTTTGACAATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAA-TTTT
776 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * * *
17405789 TCGAAAGGATTTTTGGCCCCAAACCTGGTAGACGTGATCCTTGTATTTTAGTTGGCATGCG
841 TCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* * *
17405850 CAAAAAAATTCAGCTAGAAACTCGAAGTGTACAAGAGTTTGTTACCATTTGAAAAAAGTGTCCCC
1 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
*
17405915 ATTTCAGACACTTTAATGGCTACTGGCAGCGAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
66 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* * *
17405980 GTGAGTTCTCGAGGTTTGGTGAGGGATAGGTGGCAAATATAAGGGCCAAGTACCAGCACCCATCA
131 GTGAGTTCTCGAGGTTTGATGAGGGATAGG-GGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * ** * *
17406045 CACATCATGTGTGCACACCCCCCTCGGCCCCCCCGATCGCCGGAACCATAATGCCGCCGATTAGG
195 CACATCATGTGCGCACA-CCCCC-CGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGG
17406110 TTCTCCGGA-GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCG
257 TTCTCC-GACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCG
*
17406174 AGCCCAGCATGTGCTGCCG-AAACC-C--T-C-G---G-TC-----C---G-ATG---T--G-AT
321 AGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * * * * *
17406214 -CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAA-CTAGCGAAACGACCGTGTGGGCGTTTA
386 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA-CGAAACGAGCGTGCGGGCGCTCA
* * * * *
17406277 GCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGCCGAGTCCCCCTCTGTGTGCTGCCAAT
450 GCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGAT
* *
17406342 CCTGCTGCCCCAACCCTCGGTCTGGTCTGATCTGAGACTGGGAATGAACTCCGTATGCCTAAGCC
515 CCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * ** *
17406407 AACCAACGAAACGA----GCGGGC---AGGAAG-GCACTACG-CAGGCCAGAGAGACAGGATGCG
580 AACCGACGAAACGAGCGGGCGGGCGGGCGGGCGAGCACTACGTC-GGCCAGAGAGACGGGATGCG
* *
17406463 CAAGCCGTGGATCGATAGGTTGGTAGGTGGGTTTAGGCACATCTTCTTATTTCTGCGTGCCAATG
644 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATG
* *
17406528 CCATTTTTATGGCTTGTAAATTCATACAATCGTCCCTTAAGCCTTCACGTGAAGTTTCACGGCAA
709 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* ** * ** * *
17406593 GACGACTCATTTTCTCCTTTTCAAGATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTT
774 GACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTT
* * * *
17406658 TTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCTTGCA
839 TTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* *
17406721 CAAAAAAA-TCAGCTAAAAATTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTC
1 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
*
17406785 ATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
66 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
*
17406850 GTGAGTTCTCGAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCAACCATCG
131 GTGAGTTCTCGAGGTTTGATGAGGGATAGG-GGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* *
17406915 CACATCATGTGCGCACA------------CC-ATCGTCGGAACACCAATGCCGTCGGTCAGGTTC
195 CACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
* * *
17406967 TCCGACGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCGACCC
260 TCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * * *
17407032 CAGCATGTGCTGCTGCAACCCTCGGTCCAGTTCGATCTTAGATTGGGAATGAACTCTGTATGCTT
325 CAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * * * * *
17407097 CGACTGGAAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTACGAGCGCTCAGCCGG
390 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * * * ** * * * *
17407162 CCAGAGGGGTGGGATGCACAAGTC-AGCGATCGGCTGGGTCCTTCTCTGCGTGTTACGGATCTTG
455 CCAGAGGGGCGGGATGCGCAAGCCGAG-GATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTG
** * * **
17407226 CTGCCGTAACCCTCAGTCTGGTCTGATCTTATACTGGGAATGAACTCTATATGCCTAAGCCAACC
519 CTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * ** *
17407291 GACGAAACGAGCGAGCGAGCGGGCAGGCGGGCACTACACCGGCCATAGAGACGGGATGCGCAAGC
584 GACGAAACGAGCGGGCGGGCGGGCGGGCGAGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
* *
17407356 CGTGGATCGATAGGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
649 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATT
* *
17407421 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGTAGGACGA
714 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * **
17407486 CTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAGCATTTTTTCG
779 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
* *
17407551 GATGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
844 AAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* *
17407609 CAAAAACATTCAGCTAAAAACTCTAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
1 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
*
17407674 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGT
66 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
17407739 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
131 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* *
17407804 ACATCATGTGCGTACACCCCGCCCCTGGTCCCCCCGATCG-CTGGAACCCCAATGCCGCCGGTTA
196 ACATCATGTGCG--CACACC-CCCC-GG-CCCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCA
* **
17407868 GGTTCTCCGAC-ATTGCTCCGACGATGGTGCCCCAACGAAGAAAAATGCGGCACCAGCACATGTT
255 GGTTCTCCGACGA-TGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCC
* * * * ** * * *
17407932 CGAGCCTAGCGTGTAG-TACCACAACCCTCGGTCTGGTTCAATCTTAGACTGGGAATGAACTCTG
319 CGAGCCCAGCATGT-GCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCG
* * * * *
17407996 AATGCCTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACTAAACAAGCGTGTGGGCGCT
383 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
* *
17408061 CAGCCGGCCAGA-GGGCGGGATGAGCTAGCCG
448 CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
17408092 GGCACTACGT
Statistics
Matches: 8891, Mismatches: 1119, Indels: 538
0.84 0.11 0.05
Matches are distributed among these distances:
853 2 0.00
854 99 0.01
855 6 0.00
856 1 0.00
858 1 0.00
859 1 0.00
860 1 0.00
863 1 0.00
864 9 0.00
865 301 0.03
866 557 0.06
867 1 0.00
868 2 0.00
869 3 0.00
870 396 0.04
871 65 0.01
872 6 0.00
873 4 0.00
874 2 0.00
876 57 0.01
877 3 0.00
878 6 0.00
879 308 0.03
880 353 0.04
881 13 0.00
882 1 0.00
883 123 0.01
884 130 0.01
885 12 0.00
886 9 0.00
887 4 0.00
888 378 0.04
889 488 0.05
890 418 0.05
891 931 0.10
892 38 0.00
893 18 0.00
894 5 0.00
895 23 0.00
896 524 0.06
897 150 0.02
898 187 0.02
899 185 0.02
900 105 0.01
901 277 0.03
902 348 0.04
903 138 0.02
904 469 0.05
905 707 0.08
906 264 0.03
907 4 0.00
908 1 0.00
909 4 0.00
910 60 0.01
911 83 0.01
912 13 0.00
913 105 0.01
914 441 0.05
915 8 0.00
916 13 0.00
917 13 0.00
918 6 0.00
919 8 0.00
920 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (901 bp):
CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
ACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
CCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
AGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
CAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCT
GCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
CGAAACGAGCGGGCGGGCGGGCGGGCGAGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTT
TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAA
AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
Found at i:17400018 original size:25 final size:26
Alignment explanation
Indices: 17399975--17400026 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
17399965 CTAGTCTGAT
17399975 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17400001 CTTAGACT-GGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17400026 C
1 C
17400027 CTAACTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 18 0.69
26 8 0.31
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17404468 original size:26 final size:26
Alignment explanation
Indices: 17404439--17404491 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17404429 CCGGTCCAAT
17404439 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17404465 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17404491 C
1 C
17404492 CTAAGTGTAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17408005 original size:26 final size:26
Alignment explanation
Indices: 17407976--17408029 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
17407966 GGTTCAATCT
*
17407976 TAGACTGGGAATGAACTCTGAATGCC
1 TAGACTGGGAATGAACTCCGAATGCC
*
17408002 TAGACTGGGAATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGAATGCC
17408028 TA
1 TA
17408030 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGAATGCC
Found at i:17408520 original size:773 final size:772
Alignment explanation
Indices: 17407318--17408848 Score: 2284
Period size: 773 Copynumber: 2.0 Consensus size: 772
17407308 AGCGGGCAGG
* * *
17407318 CGGGCACTACACCGGCCATAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGCAGGTGGGT
1 CGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGAGGCAGGTGGGT
* *
17407383 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
66 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGCCATGTAAATTCATACAATGG
* *
17407448 TCCCTTAAGCCTTCACGTGAAGTTTCATGGTAGGACGACTCGTTTTCTATTTTTCACGATTTTTA
131 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTA
** ** ** *
17407513 AAACTTTTTACGGTTCGGGATTTTTTAGCATTTTTTCGGATGGAGTTTTGGCCCCAAACTTGGTA
196 AAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTAAGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * * *
17407578 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCTAAGTGTACAA
261 GACGTGATCCTTGTAATTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAA
* *
17407643 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
326 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGCCAGCAAAC
17407708 CTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGC
391 CTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * *
17407772 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCGCC-CCTGGTCCC
456 CAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGGGCGCACACCCC-CCACC-GG-CCC
** * ** *
17407836 CC-CGATCG-CTGGAACCCCAATGCCGCCGGTTAGGTTCTCCGAC-ATTGCTCCGACGATGGTGC
518 CCTCGATCGTC-AAAACCCCAATCCCGCAAGTCAGGTTCTCCGACGA-TGCTCCGACGATGGTGC
** ** * * *
17407898 CCCAACGAAGAAAAATGCGGCACCAGCACATGTTCGAGCCTAGCGTGTAG-TACCACAACCCTCG
581 CCCAACGAAGAAAAATGCAACACCAGCACATGACCGAGCCCAACATGT-GCTACCACAACCCTCG
* * ** *
17407962 GTCTGGTTCAATCTTAGACTGGGAATGAACTCTGAATGCCTAGACTGGGAATGAACTCCGTATGC
645 GTCTGATCCAATCTTAGACTCAGAATGAACTCTCAATGCCTAGACTGGGAATGAACTCCGTATGC
* ** * *
17408027 CTAAGTCAACCCACTAAACAAGCGTGTGGGCGCTCAGCCGGCCAGAGGGCGGGATGAGCTAGC
710 CTAAGTCAACCCACGAAACAAGCGTACGAGCGCTCAGCCGGCCAAAGGGCGGGATGAGCTAGC
** * *
17408090 CGGGCACTACGTCGGCCAGAGAGATGGGATGCGCAA-CCATGGATCGATAGGGAGGTAGGTGGGT
1 CGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGAGGCAGGTGGGT
*
17408154 TTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGCCATGTAAATTCATACAATGG
66 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGCCATGTAAATTCATACAATGG
* * *
17408219 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATGATTTTTG
131 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTA
* *
17408284 AATCTTTTTGCGGTTCAAGATTTTTTTTAAAATTTTTAAGGAAGGAGTTTTGGCCCCAAACTTGG
196 AAACTTTTTACGGTTCAAGA--TTTTTTAAAATTTTTAAGGAAGGAGTTTTGGCCCCAAACTTGG
* *
17408349 TAGACGTGATCCTTGTAATTTTGTTGGCATGCACAAAAAAAATCAGGTAAAAACTCGAAGTGTAT
259 TAGACGTGATCCTTGTAATTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTAC
* *
17408414 ATGATTTTGTGACCATTTGAAAAAAGTGTGCCCATTTCAAACACTTTAATGGCTACTGCCAGCAA
324 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGCCAGCAA
17408479 ACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
389 ACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
*
17408544 GCCAATATAAGGGCCAAGTACCAGCACCCTTCACACATCATGGGCGCACACCCCCCACCGGCCCC
454 GCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGGGCGCACACCCCCCACCGGCCCC
* *
17408609 CTCGATCGTCAAAATCCCAATCCCGCAAGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCC
519 CTCGATCGTCAAAACCCCAATCCCGCAAGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCC
* * ** *
17408674 GACGAAGAAAAATGCAACACCAGCACATGACCGAGCCCAACATGTGCTGCTGCAACCTTCGGTCT
584 AACGAAGAAAAATGCAACACCAGCACATGACCGAGCCCAACATGTGCTACCACAACCCTCGGTCT
* * *
17408739 GATCCGATCTTAGACTCAGAATGAACTCTCTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
649 GATCCAATCTTAGACTCAGAATGAACTCTCAATGCCTAGACTGGGAATGAACTCCGTATGCCTAA
* *
17408804 GTCAACCCACGAAACGAGCGTACGAGCGCTCAGTCGGCCAAAGGG
714 GTCAACCCACGAAACAAGCGTACGAGCGCTCAGCCGGCCAAAGGG
17408849 GCAGGATGCA
Statistics
Matches: 678, Mismatches: 73, Indels: 15
0.89 0.10 0.02
Matches are distributed among these distances:
771 163 0.24
772 38 0.06
773 420 0.62
774 57 0.08
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (772 bp):
CGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGAGGCAGGTGGGT
TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGCCATGTAAATTCATACAATGG
TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTA
AAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTAAGGAAGGAGTTTTGGCCCCAAACTTGGTA
GACGTGATCCTTGTAATTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAA
GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGCCAGCAAAC
CTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
CAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGGGCGCACACCCCCCACCGGCCCCCT
CGATCGTCAAAACCCCAATCCCGCAAGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCAA
CGAAGAAAAATGCAACACCAGCACATGACCGAGCCCAACATGTGCTACCACAACCCTCGGTCTGA
TCCAATCTTAGACTCAGAATGAACTCTCAATGCCTAGACTGGGAATGAACTCCGTATGCCTAAGT
CAACCCACGAAACAAGCGTACGAGCGCTCAGCCGGCCAAAGGGCGGGATGAGCTAGC
Found at i:17412296 original size:26 final size:26
Alignment explanation
Indices: 17412247--17412299 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17412237 GTTGAGTTAG
* *
17412247 GCATATGGAGTTCATTCGCCGTCTAA
1 GCATACGGAGTTCATTCGCAGTCTAA
17412273 GCATACGGAGTTCATTTCG-AGTCTAA
1 GCATACGGAGTTCA-TTCGCAGTCTAA
17412299 G
1 G
17412300 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCGCAGTCTAA
Found at i:17413179 original size:26 final size:26
Alignment explanation
Indices: 17413143--17413193 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17413133 GTTGACTTAG
*
17413143 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17413169 GCATACAGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATTCCCAGTCTA
17413194 GGATCGGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17417560 original size:26 final size:26
Alignment explanation
Indices: 17417531--17417583 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17417521 GTTGACTTAG
17417531 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* * *
17417557 GCATACGGAGTTCATTGCCAGTGTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17417583 G
1 G
17417584 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17417728 original size:892 final size:881
Alignment explanation
Indices: 17414816--17417945 Score: 3190
Period size: 916 Copynumber: 3.5 Consensus size: 881
17414806 TACTCCCACC
* * * * * *
17414816 CCTCTGGCCGGTTGAGCGCCCACACGCTGTTTAGTGGGTTGACTTAGGCATACGGAGTTCATTCC
1 CCTCTGGCAGGCTGAGCGCCCGCACGCTGTTTCGTAGGTTGACTTAGGCATACGAAGTTCATTCC
* * * ** * * *
17414881 CAGTCTAAGCATTCAGAGTTCA-TTCCCAGTCTAAGAT-TGAACCAAACCGAGGGTTACGGTAGT
66 CAGTCTAAGCATACGGA-TTCAGTTCCCAGTCTAAGATCAG-A-CGGACCGAGGGTCACGGCAGC
* *** ** *
17414944 ACATGCTAGGCTCGAATATGTGCTGGTGCCGCATTTTTCTTTGTTGGGGCACCATCGTCGGAGCA
128 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGC-
* * *
17415009 AT-GCCGGAGAACCTAACCGACGGCATTGGGGTTC-CAGCGATCGGGGGGACCAGGGCGGGGTGT
192 ATCGTCGGAGAACCTAACCGACGGCATTGGGGTTCTGAGCGATCGGGGGG-CC---GAGGGGTG-
*
17415072 A-CGCACATGATGTGCGATGGATGCTGGTACTTGGCCCTTATATTGGCCCGC-TATCCCTCATCA
252 AGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC-CTTATCCCTCATCA
*
17415135 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCA
316 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
*
17415200 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
381 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTT
17415265 TAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGGCTACCAAGTTTGGGGCCAA
446 TAGCTGAATGTTTTTGTGCATGCCAAC-AAAATACAAGGATCACGGCTACCAAGTTTGGGGCCAA
* * **
17415330 AACTCCATCCGAAAAAATGTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATA
510 AACTCCTTCCGAAAAAATTTTAAAAAATCC-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATA
* * *
17415395 GAAAACGAGTCGTCCTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
574 AAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
17415460 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT--A--A---A--ACCC--AC
639 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCACCTACCACCCTAAC
* *
17415514 ---C-T-G--TACCATCCTATC-CTCT--CCGGCGTA-----TGCCCACCCGACCCGCTCG-T--
704 GATCATGGCTTACCATCCCATCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCG-CCCGCTCGCTCG
* * * *
17415561 TTCCGTCAGGTTGGCTTA-GCATACGA-TTTATTTCCCAGTCTAAGATCA-ACTTGGACCGTAGG
768 TTTCGTC-GGTTGGCTTAGGCATAGGAGTTCA-TTCCCAGTCTAAGATCAGAC-TAGACCG-AGG
* ** * * *
17415623 GTTGTGCAGCAGATTTGAGCACAAATAGAGAGGACCCGCGAT-CCTCGGCTTGCGCATCCTTGCC
829 G-T-T--A-C-G--GT-AGCACGCAGAG-GAGGACCGGCGATCCCT-GGCTTGCGCATCC-TGCA
* * * * *
17415687 CCTCTAGCAGG-T-AGCGCTCGCACG-TCATTT-GTGGGTAGACTTA-GCATACCGAAG-TCATT
1 CCTCTGGCAGGCTGAGCGCCCGCACGCT-GTTTCGTAGGTTGACTTAGGCATA-CGAAGTTCATT
** * * *
17415746 CCCAGTCTAAGCATACGGATTCAGTTCCCAGT-TAAGATTGGACCGACCGAGGTTGC-CGACAGC
64 CCCAGTCTAAGCATACGGATTCAGTTCCCAGTCTAAGATCAGACGGACCGAGGGT-CACGGCAGC
* * * *
17415809 ACATGC-CGGCT-GGGCATTGTTGCT-GTGCCGCAATTTT-TTC-GCCGGGCACCA-CGTCGGAA
128 ACATGCTGGGCTCGGGCA-TG-TGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGG-A
* * * *
17415868 GCATCGTCGGAGAAACCTGACCGACGGCATTTGGGGTTCCGA-CAATCGGAGGGCCGAGGGGGTG
190 GCATCGTCGGAG-AACCTAACCGACGGCA-TTGGGGTTCTGAGCGATCGGGGGGCCGA-GGGGTG
* *
17415932 TGCGCACATGATGTG-GATGGGGTG-TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
252 AGCGCACATGATGTGCGAT-GGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCA
* * *
17415995 AACCTCGAGAAATCACAGCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCC
316 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG-CC
*
17416060 ATTAAAGTGTCTGAAATGGGGAAACCTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTT
380 ATTAAAGTGTCTGAAATGGGGACA-CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTT
* ** * *
17416125 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAATA-AATGGATCACTTCTACCAATTTTGGGACC
444 TTTAGCTGAATGTTTTTGTGCATGCCAACAAAATACAA-GGATCACGGCTACCAAGTTTGGGGCC
* *
17416189 AAAACTCCTTTC-AAAAATTTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAA
508 AAAACTCCTTCCGAAAAAATTTTAAAAAAT-CCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAA
* * * *
17416253 T-AGAAACG-GCCATCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGCATGAATTTA
572 TAAAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTA
*
17416316 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATTAAGATGTGCCTAAACCCACCTACCACCCT
637 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA-CCACCTACCACCCT
* * * * * * * *
17416381 ATCGATCCACGGCTTGCACATCCCGTCTCCCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCA
701 AACGAT-CATGGCTTAC-CATCCCATCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCGCTCG
* * * * * * *
17416446 CTCGTTTCGTCAGTGGGCTTAGGAATACGAAGTTCATTCCTAGTCTAAGATCCGACTAGACTGAG
764 CTCGTTTCGTCGGTTGGCTTAGGCATA-GGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAG
* * * * ** * * * ** *
17416511 GGTTGCGGCACCATCGCCAGAGCAACACCGGGGCA-CCAT--CGT-CG-AAACTTCA
828 GGTTACGGTAGCA-CG-CAGAGGAGGACCGGCG-ATCCCTGGCTTGCGCATCCTGCA
* * * * * * * * *
17416563 --TGT-GAAGGCTTAAGGGACCCTTGTATGAAT-TTACAAGCCATAAAAATGGCATTAGCACATA
1 CCTCTGGCAGGC-TGAGCG-CCC--GCACG-CTGTTTC--G---T----A-GG--TT-G-ACTTA
** * ** * * * * *
17416624 GAAATATGAAGATGTGCCCAAACCCA-CCTACCAACCTATC-GATCCACAGCTTGCGCATCCCGT
47 GGCATACGAAG-T-T---CATTCCCAGTCTA--AGCATA-CGGAT--TCAG-TT---C--CCAGT
* * *
17416687 CTAAGATCAGACTGGAGCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGT
96 CTAAGATCAGAC-GGACCGAGGGTCACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
* * * *
17416752 ATTTTTCTTCACCGGGGCACCATCATCGGAGCATCG-CTGGAGAACCTGACTGACGGCATTGGGG
160 ATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTC-GGAGAACCTAACCGACGGCATTGGGG
17416816 TTCT-AGCGATCGAGGGGGCCGAGGGGTGAGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
224 TTCTGAGCGATCG-GGGGGCCGAGGGGTGAGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* * * *
17416880 CCTTATATTGGCCCCTTGTCCCTCATCAAACCTTGAAGAACTCACACCCTCTTAAGGAGCATTTG
288 CCTTATATTGGCCCCTTATCCCTCATCAAACCTCG-AGAACTCACACCCCCTTAAAGAGCATTTG
*
17416945 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGTGGACACTTTTTTCAAATG
352 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
*
17417010 GTCACAAAATCTTGTACACTTCAAGTTTTTAGCTAAATGTTTTTGTGCATGCCAACAAAAGTACA
417 GTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAA-TACA
17417075 AGGATCACGGCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACC
481 AGGATCACGGCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC-CGAACC
* * *
17417140 TTAAAAAGCTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAA
545 GTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAA
* **
17417205 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAATTGGCATTGGCACACAGAAATATGAA
610 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAA
* * *
17417270 GATGTGCCTAAACTCACCTACCACCCTAACGATTCATGGCTTACGCATCCCATCTCTTTGGCTGA
675 GATGTGCCTAAAC-CACCTACCACCCTAACGA-TCATGGCTTAC-CATCCCATCTCTCTGGCCGG
17417335 CGTAGTGCCTGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATT
737 CGTAGTGCCTGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATA-GGAGTTCATT
* ** * *
17417400 CCCAGCCTAAGATCAGACCCGACCGAGGGTTACGGTAGCACGCAGAGGGGGACATGGCCGATCCC
801 CCCAGTCTAAGATCAGACTAGACCGAGGGTTACGGTAGCACGCAGAGGAGGAC-CGG-CGATCCC
*
17417465 TGGCTTGCGCATCCCGCA
864 TGGCTTGCGCATCCTGCA
* *
17417483 CCTCTGGCTGGCTGAGCGCCCGCATGCTCGTTTCGTAGGTTGACTTAGGCATACGAAGTTCATTC
1 CCTCTGGCAGGCTGAGCGCCCGCACGCT-GTTTCGTAGGTTGACTTAGGCATACGAAGTTCATTC
* * *
17417548 CCAGTCTAAGCATACGGAGTTCA-TTGCCAGTGTAAGATCAGATCGGACTGAGGGTCACGGCAGC
65 CCAGTCTAAGCATACGGA-TTCAGTTCCCAGTCTAAGATCAGA-CGGACCGAGGGTCACGGCAGC
* * *
17417612 ACATGCTGGGCTCAGGCATGTGCTAGTGCAGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCA
128 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCA
* * ** * *
17417677 TCGTCAGAGAACCTAACTGACGGCATTCAGGTTCTGA-CGATCAGGGGGGCCGGGGGGTGTGCGC
193 TCGTCGGAGAACCTAACCGACGGCATTGGGGTTCTGAGCGATC-GGGGGGCCGAGGGGTGAGCGC
* * * *
17417741 ACATGATGTACGATGGGTGCTGGTATTTGGCCCTTCTATTGGCCCCTTATCCCTCATCAAACCTT
257 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTC
* *
17417806 GAGAAGTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAG
322 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* *
17417871 TGTGTGAAATGGGGACACTTCTTTCAAATGGTCACAAAATCTTGTACACTT-AGAGTTTTTAGCT
387 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCA-AGTTTTTAGCT
* *
17417935 TAATTTTTTTG
451 GAATGTTTTTG
17417946 GGGATAAAAC
Statistics
Matches: 1863, Mismatches: 252, Indels: 268
0.78 0.11 0.11
Matches are distributed among these distances:
858 96 0.05
859 6 0.00
860 148 0.08
861 96 0.05
862 84 0.05
863 22 0.01
864 36 0.02
865 24 0.01
866 12 0.01
867 36 0.02
868 21 0.01
869 13 0.01
870 2 0.00
871 9 0.00
873 4 0.00
874 3 0.00
875 1 0.00
876 6 0.00
877 4 0.00
878 4 0.00
879 14 0.01
880 6 0.00
881 8 0.00
882 15 0.01
883 1 0.00
884 1 0.00
885 1 0.00
886 6 0.00
887 10 0.01
888 9 0.00
889 14 0.01
890 24 0.01
891 133 0.07
892 205 0.11
893 5 0.00
894 8 0.00
895 3 0.00
897 3 0.00
899 6 0.00
900 12 0.01
901 14 0.01
902 4 0.00
903 3 0.00
904 3 0.00
905 1 0.00
906 12 0.01
907 2 0.00
908 2 0.00
909 4 0.00
910 11 0.01
911 26 0.01
912 127 0.07
913 138 0.07
914 126 0.07
915 18 0.01
916 230 0.12
917 1 0.00
918 4 0.00
919 6 0.00
920 7 0.00
921 3 0.00
922 6 0.00
923 4 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (881 bp):
CCTCTGGCAGGCTGAGCGCCCGCACGCTGTTTCGTAGGTTGACTTAGGCATACGAAGTTCATTCC
CAGTCTAAGCATACGGATTCAGTTCCCAGTCTAAGATCAGACGGACCGAGGGTCACGGCAGCACA
TGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCG
TCGGAGAACCTAACCGACGGCATTGGGGTTCTGAGCGATCGGGGGGCCGAGGGGTGAGCGCACAT
GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGA
ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATG
TTTTTGTGCATGCCAACAAAATACAAGGATCACGGCTACCAAGTTTGGGGCCAAAACTCCTTCCG
AAAAAATTTTAAAAAATCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCG
TCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCACCTACCACCCTAACGATCATGGCTTA
CCATCCCATCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGG
CTTAGGCATAGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTACGGTAGCACGCAG
AGGAGGACCGGCGATCCCTGGCTTGCGCATCCTGCA
Found at i:17420024 original size:26 final size:26
Alignment explanation
Indices: 17419972--17420024 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17419962 GTTGACTTAG
* *
17419972 GCATACAGAGTTTATTCCCCGTATAA
1 GCATACAGAGTTCATTCCCAGTATAA
* *
17419998 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTATAA
17420024 G
1 G
17420025 ATCGGATCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTATAA
Found at i:17420260 original size:893 final size:890
Alignment explanation
Indices: 17418222--17421361 Score: 4121
Period size: 893 Copynumber: 3.5 Consensus size: 890
17418212 GTTGGCTTAG
* * * *
17418222 GCATACGGAGTTCATTCCCAGTCTAAGATCGG-GCTGAACCGAGGGTTGCAGCAGTACATGCT-G
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-GGACCAAGGGTTGCAGCAGCACATGCTGG
* * *
17418285 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCGGGGGCACCAT---C---G---C-T-GGAG
65 GCTCGGCCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAG
* *
17418339 AACCTGACCGGC-AGCATT-GGGTTTTCGACGATCGGGGAGGCCGGGGGGGTGTGC-TCACAAT-
130 AACCTGACCGGCGA-CATTAGGG-TTCCGACGATCGGGG-GGGC-GGGGGGTGTGCGTCAC-ATG
** * * * * * *
17418400 ATGTGCAATGGGTGCTAGTACTTGGCACTTATATTGGCCCCCTATCCCTGATCAAAGCTCAAGC-
190 ATGTGTGATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCGAGCA
**
17418464 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCTTTAAAGTGTC
255 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAGTAAAGTGTC
17418529 TAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGCTGAATT
320 TAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGCTGAATT
17418594 TTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAACTCCTTCCG
385 TTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAACTCCTTCCG
17418659 AAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTTGAAAATTGTGAACAATAGAAAATGAGTC
450 AAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTTGAAAATTGTGAACAATAGAAAATGAGTC
17418724 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
515 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
17418789 TGGCATTGGCACACAGAAATATGAAGATGTTCCCAAACCCACCTACCACCCTATCGATCCACAGC
580 TGGCATTGGCACACAGAAATATGAAGATGTTCCTAAACCCACCTACCACCCTATCGATCCACGGC
* *
17418854 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACCCGCCCGCTCATTTCGT-GG
645 TTGCGCATCCCGTCTCTCTGGCCGACGTAGT----GCCCG----CCTGCCCGCTTATTTCGTCGG
* * * * * * *
17418918 TTGGCCTTAGGTATACGGAAGTTCATTCCCAGTCTAAGATGTGGACCTGACTGA--GTTGCGGCA
702 TTGG-GTTAGGCATACGG-AGTTCATTCCTAGTCTAAGAT-TTGACCAGACCGAGGGTTGTGGCA
* * *
17418981 TTCAAGCATCGGCAGCACG-AG-TGAGGACC-CGAT---CGA--T-C--CCCCGA--CT-T-G-C
764 AT-AAG-ATCGGCAGCACGAAGAGGGGGACCGCGATCCCCGACTTACGACCCC-ACCCTCTGGCC
* * * * * * * * *
17419030 -ACTGAGTGCCCGCACGCCTCATTTTCATGTGGTTGACTTAGGCATATGGAGGTCATT-CCAGTT
826 GACCGAGTGCCCGTAC-ACTCA-TTTCGTG-GGTTGACTTAGGCATACGGAGTTTATTCCCCGTA
17419093 TAA
888 TAA
* * * *
17419096 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTTAAGGGTTGCAAGCAGCACATGCTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGAC-CAAGGGTTGC-AGCAGCACATGCTG
* * * * *
17419161 GGCTCGGGCATGTGCT-GTGTCGCA-TTTTCTTCCGTCGAGGCACCCATCCGCCACGAGACAATC
64 GGCTCGGCCATGTGCTGGTGCCGCATTTTTCTT-CGCCGGGGCA-CCAT-CGCC-GGAG-C-ATC
* * * *
17419224 GTCGGAGAACCTGATCGACGGCATTAGGCGTT-CGACGAT-TGGGGGGCGGGGGGTGTGCGTCAC
123 GTCGGAGAACCTGACCGGCGACATTAGG-GTTCCGACGATCGGGGGGGCGGGGGGTGTGCGTCAC
* * *
17419287 ATGATGTGTGATGGCGTG-TGGGTACTTGTCCCATATATTGTCCCCCTATCCCTTATCAAAACCT
187 ATGATGTGTGATGG-GTGCT-GGTACTTGGCCCATATATTGGCCCCCTATCCCTCATC-AAACCT
* * * *
17419351 CGAGAAACTCACACCCCCTTAAAAAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGACAGTAA
249 CGAGCAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAGTAA
*
17419416 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGC
314 AGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGC
17419481 TGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAACTC
379 TGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAACTC
17419546 CTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTTGAAAATTGTGAACAATAGAAAA
444 CTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTTGAAAATTGTGAACAATAGAAAA
17419611 TGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
509 TGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
*
17419676 TAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
574 TAAAAATGGCATTGGCACACAGAAATATGAAGATGTTCCTAAACCCACCTACCACCCTATCGATC
* * * * *
17419741 CACGGCATGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCTGCTCGCTTATTTTGTCGGTT
639 CACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCTTATTTCGTCGGTT
* * *
17419806 GGGTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTTGATCAGACCGAGGGTTGTGGTAGTAAG
704 GGGTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTTGACCAGACCGAGGGTTGTGGCAATAAG
* *
17419871 ATTGGTAGCACGAAGAGGGGGACCTGGTCGATCCCCGACTTACGTACCCCACCCCTCTGGCCGAC
769 ATCGGCAGCACGAAGAGGGGGACC--G-CGATCCCCGACTTACG-ACCCCA-CCCTCTGGCCGAC
*
17419936 CGAGTGCCCGTACACTCATTTCGTGGGTTGACTTAGGCATACAGAGTTTATTCCCCGTATAA
829 CGAGTGCCCGTACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCCCGTATAA
* *
17419998 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTGCAGCAGCACATGCTGGG
* * *
17420063 CTCGGCCATGTGCTGGTCCCGCATTTTTCTTTGCCGGGGCACCATCGCCGGAGCATCGCCGGAGA
66 CTCGGCCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * *
17420128 ACCTGACCGGCGACATTAGTGTTCCGGCGATCGGGGGGGCGGGGGGTGTGTG-CACATGATGTGT
131 ACCTGACCGGCGACATTAGGGTTCCGACGATCGGGGGGGCGGGGGGTGTGCGTCACATGATGTGT
* * * * *
17420192 GATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGA-CAATTGAC
196 GATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCGAGCAACTCAC
* * *
17420256 ACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTAGTAAAGTGTCTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAGTAAAGTGTCTAAAAT
*
17420321 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGCTGAATTTTTTTG
* * *
17420386 TGCATGCCAAGAAAAATACAAGGATCACATCCACCAAGTTTGGGGCTAAAACTCCTTCCGAAAAA
391 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC-AAAACTCCTTCCGAAAAA
* * * * ** ** ** * * *
17420451 AGTTTGAAAAATCCCAAATCGTAAAAAGTTTCAAAAATCATAAAAAATAGAAAACGAGTCGTCTT
455 ATTTTAAAAAATCCCGAACCACAAAAAGTTTTGAAAATTGTGAACAATAGAAAATGAGTCGTCTT
* *
17420516 GCCATGAAACTTCACGAGAAGGCTTAAGGGACCAGTGTATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
**
17420581 TTGGCATGCAGAAATATGAAGATGTTCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
585 TTGGCACACAGAAATATGAAGATGTTCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
17420646 TATCCCGTCTCTCTAGCCAACGTAGTGCCCGCCTGCCCGCTTATTTCGTCAGTTGGGTTAGGCAT
650 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCTTATTTCGTCGGTTGGGTTAGGCAT
*
17420711 ACGGAGTTCATTCCTAGTCTAAGATTTGACCAGACCGAGGGTTGTGGCAATAAGATCGACAGCAC
715 ACGGAGTTCATTCCTAGTCTAAGATTTGACCAGACCGAGGGTTGTGGCAATAAGATCGGCAGCAC
*
17420776 GAAGAGGGGGACCCGACCGATCCCCGACTTACGCACCCCAACCCTCTGGCCGGCCGAAG-GCCCG
780 GAAGAGGGGGA-CCG--CGATCCCCGACTTACG-ACCCC-ACCCTCTGGCCGACCG-AGTGCCCG
* *
17420840 TACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCCCGTCTAA
839 TACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCCCGTATAA
* * * * *
17420892 TCATACGGAGTTCATTCACAGTCTAAGATCGGATCGGATCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTGCAGCAGCACATGCTGGG
** * * *
17420957 CTCGGCCATGTGCTGGTGCCATAGTTTTCTTTGCCGGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGCCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * ** *
17421022 ACCTGACTGGCGGCATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGTGTGC-ACACATGATGTG
131 ACCTGACCGGCGACATTAGGGTTCCGACGATCGGGGGGG-CGGGGGGTGTGCGTCACATGATGTG
*
17421086 GGATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCGAG-AACTCA
195 TGATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCGAGCAACTCA
* * * *
17421150 CACCCCCTTAAAGAGCATTTGAGATTATATAGGTTTGCTGCCAGTTGCCATTAAAGTGTCTAAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAGTAAAGTGTCTAAAA
* * * *
17421215 TGGGGACACTTTTTTAAAATGGTCACAAAATTTTGTACACTTCAAGTTTTTAGCTGAATTGTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGCTGAATT-TTTT
* * * * *
17421280 T-TGCATACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTACTTTCGAAA
389 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGG-GCAAAACTCCTTCCGAAA
*
17421344 AAATTTTCAAAAATCCCG
453 AAATTTTAAAAAATCCCG
17421362 CACGCCCGTC
Statistics
Matches: 2006, Mismatches: 189, Indels: 121
0.87 0.08 0.05
Matches are distributed among these distances:
874 33 0.02
875 16 0.01
876 25 0.01
877 20 0.01
881 1 0.00
883 19 0.01
884 25 0.01
885 40 0.02
886 6 0.00
889 21 0.01
890 18 0.01
891 38 0.02
892 36 0.02
893 587 0.29
894 573 0.29
895 307 0.15
896 56 0.03
897 20 0.01
898 7 0.00
899 4 0.00
900 34 0.02
901 46 0.02
902 56 0.03
903 5 0.00
904 13 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (890 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTGCAGCAGCACATGCTGGG
CTCGGCCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCGGAGA
ACCTGACCGGCGACATTAGGGTTCCGACGATCGGGGGGGCGGGGGGTGTGCGTCACATGATGTGT
GATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCGAGCAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAGTAAAGTGTCTAAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGCTGAATTTTTTTG
TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCCCGAACCACAAAAAGTTTTGAAAATTGTGAACAATAGAAAATGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACACAGAAATATGAAGATGTTCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCTTATTTCGTCGGTTGGGTTAGGCATA
CGGAGTTCATTCCTAGTCTAAGATTTGACCAGACCGAGGGTTGTGGCAATAAGATCGGCAGCACG
AAGAGGGGGACCGCGATCCCCGACTTACGACCCCACCCTCTGGCCGACCGAGTGCCCGTACACTC
ATTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCCCGTATAA
Found at i:17420896 original size:26 final size:26
Alignment explanation
Indices: 17420867--17420917 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
17420857 TTGACTTAGG
* * *
17420867 CATACGGAGTTTATTCCCCGTCTAAT
1 CATACGGAGTTCATTCACAGTCTAAT
17420893 CATACGGAGTTCATTCACAGTCTAA
1 CATACGGAGTTCATTCACAGTCTAA
17420918 GATCGGATCG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCACAGTCTAAT
Found at i:17421592 original size:26 final size:26
Alignment explanation
Indices: 17421556--17421609 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
17421546 TGGGTTGACT
17421556 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
17421582 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
17421608 TA
1 TA
17421610 GGATCAGACC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:17422053 original size:695 final size:693
Alignment explanation
Indices: 17420672--17422055 Score: 1995
Period size: 693 Copynumber: 2.0 Consensus size: 693
17420662 CCAACGTAGT
* * * *
17420672 GCCCGCCTGCCCGCTTATTTCGTCAGTTGGGTTAGGCATACGGAGTTCATTCCTAGTCTAAGATT
1 GCCCGCCTGCCCGCTCATTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATT
* ** *
17420737 TGACCAGACCGAGGGTTGTGGCAATAAGATCGACAGCACGAAGAGGGGGACCCGACCGATCCCCG
66 AGACCAGACCGAGGGTTACGGCAACAAGATCGACAGCACGAAGAGGGGGACCCGACCGATCCCCG
* * * *
17420802 ACTTACGCACCCCAACCCTCTGGCCGGCCGAAGGCCCGTACGCTCATTTCGTGGGTTGACTTAGG
131 ACTTACCCACCCCAACCCTCTAGCCGGCCGAAGGCCCGCACGCTCATTTCGTGGGTTGACTTAAG
* * * * * * *
17420867 CATACGGAGTTTATTCCCCGTCTAATCATACGGAGTTCATTCACAGTCTAAGATCGGATCGGATC
196 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCACAGTCTAAGATCAGACCAGACC
* * * * *
17420932 GAGGGTTGCGGCAGCACATGCTGGGCTCGGCCATGTGCTGGTGCCATAGTTTTCTTTGCCGGGGC
261 GAGGGTTACGACAGCACATGCTAGGCTCGGCCATGTGCTGGTGCCACAGTTTTCTTCGCCGGGGC
* * * *
17420997 ACCATCGTCGGAGCATCGTCGGAGAACCTGACTGGCGGCATTGGGGTTCCGGTGATCGGGGGGGC
326 ACCATCGTCAGAGCATCGACGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGC
* * *
17421062 CGGGGGGTGTGCACACATGATGTGGGATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATC
391 CGGGGGGTGTGCACACATGATGTGCGAAGGGTGCTGGTACTTCGCCCATATATTGGCCCCCTATC
*
17421127 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTATATAGGTTTGCTGCC
456 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGAATTTGAGATTATATAGGTTTGCTGCC
* *
17421192 AGTTGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTAAAATGGTCACAAAATTTTGTACACTT
521 AGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTAAAATGGTCACAAAATCTTGTACACTT
*
17421257 CAAGTTTTTAGCTGAATTGTTTTTTGCATACCAACAAAAATACAAGGATCACGTCTACCAAGTTT
586 CAAGTTTTTAGCTGAATTGTTTTTTGCATACCAAAAAAAATACAAGGATCACGTCTACCAAGTTT
*
17421322 GGGACCAAAACTACTTTCGAAAAAATTTTCAAAAATCCCGCAC
651 GGGACCAAAACTACTTTCGAAAAAATTTTAAAAAATCCCGCAC
* * * *
17421365 GCCCGTCTGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCCGTCTAAGATT
1 GCCCGCCTGCCCGCTCATTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATT
* * * * * * *
17421430 AGACCAGACCGAGGGTTACGGCAGCAGGATTGGCAGCACGTAGAGGGGGACCCGTCTGATCCCCG
66 AGACCAGACCGAGGGTTACGGCAACAAGATCGACAGCACGAAGAGGGGGACCCGACCGATCCCCG
* * * ** ** *
17421495 GCTTGCCCATCCCGCCCCTCTAGCCGGTTG-AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAA
131 ACTTACCCACCCCAACCCTCTAGCCGGCCGAAG-GCCCGCACGCTCATTTCGTGGGTTGACTTAA
* *
17421559 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAGGATCAGACCAGAC
195 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCACAGTCTAAGATCAGACCAGAC
** * **
17421624 CGAGGGTTACGATTGCACATGCTAGGCTCGGGCATGTGCTGGTGCCACA-TTTCTCTTCGTTGGG
260 CGAGGGTTACGACAGCACATGCTAGGCTCGGCCATGTGCTGGTGCCACAGTTT-TCTTCGCCGGG
*
17421688 GCACCATCGTCAGAGCATC-ACAGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGGTCGGGGG
324 GCACCATCGTCAGAGCATCGAC-GGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGG
*
17421752 GGCCGAGGGGGGTGTGCACACATGATGTGCGAAGGGTGCTGGTACTTCGCCCTTATATTGGCCCC
388 GGCC--GGGGGGTGTGCACACATGATGTGCGAAGGGTGCTGGTACTTCGCCCATATATTGGCCCC
* * *
17421817 CTGTCCCTCATCAAACCTCGAGAACTCACATCCCCTTAAAGAGAATTTGAGATTTTATAGGTTTG
451 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGAATTTGAGATTATATAGGTTTG
* *
17421882 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
516 CTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTAAAATGGTCACAAAATCTTGTA
* *
17421947 CACTTCAAGTTTTTAGCTGAATT-TTTTTGTGCATGCCAAAAAAAATACGAGGATCACGTCTACC
581 CACTTCAAGTTTTTAGCTGAATTGTTTTT-TGCATACCAAAAAAAATACAAGGATCACGTCTACC
* ** *
17422011 ATGTTTGGGGTCAAAACT-CTTTCCGACAAAATTTTAAAAAATCCC
645 AAGTTTGGGACCAAAACTACTTT-CGAAAAAATTTTAAAAAATCCC
17422056 AAACCGTAAA
Statistics
Matches: 609, Mismatches: 75, Indels: 12
0.88 0.11 0.02
Matches are distributed among these distances:
692 6 0.01
693 327 0.54
694 9 0.01
695 267 0.44
ACGTcount: A:0.23, C:0.25, G:0.26, T:0.26
Consensus pattern (693 bp):
GCCCGCCTGCCCGCTCATTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATT
AGACCAGACCGAGGGTTACGGCAACAAGATCGACAGCACGAAGAGGGGGACCCGACCGATCCCCG
ACTTACCCACCCCAACCCTCTAGCCGGCCGAAGGCCCGCACGCTCATTTCGTGGGTTGACTTAAG
CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCACAGTCTAAGATCAGACCAGACC
GAGGGTTACGACAGCACATGCTAGGCTCGGCCATGTGCTGGTGCCACAGTTTTCTTCGCCGGGGC
ACCATCGTCAGAGCATCGACGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGC
CGGGGGGTGTGCACACATGATGTGCGAAGGGTGCTGGTACTTCGCCCATATATTGGCCCCCTATC
CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGAATTTGAGATTATATAGGTTTGCTGCC
AGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTAAAATGGTCACAAAATCTTGTACACTT
CAAGTTTTTAGCTGAATTGTTTTTTGCATACCAAAAAAAATACAAGGATCACGTCTACCAAGTTT
GGGACCAAAACTACTTTCGAAAAAATTTTAAAAAATCCCGCAC
Found at i:17423364 original size:26 final size:26
Alignment explanation
Indices: 17423328--17423380 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17423318 GTTAACTTAG
*
17423328 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17423354 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17423380 G
1 G
17423381 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17424257 original size:26 final size:25
Alignment explanation
Indices: 17424227--17424278 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
17424217 GTTGACTTAG
*
17424227 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATT-CCAGTCTAA
17424253 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
17424278 G
1 G
17424279 ATCGAATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 9 0.36
26 16 0.64
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:17424576 original size:900 final size:892
Alignment explanation
Indices: 17421371--17433484 Score: 9895
Period size: 900 Copynumber: 13.8 Consensus size: 892
17421361 GCACGCCCGT
* * * * *
17421371 CTGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCCGTCTAAGATTAGACC-
1 CTGCCCGCTCATTTCATCGATTGGCTTAGGCATACAGAGTTCATT-CCAGTCTAAGATCAGACCG
* * * * * * * * *
17421435 AGACCGAGGGTTACGGCAGCAGGATTGGCAGCACGTAGAGGGGGACCCGTCTGATCCCCGGCTTG
65 A-ACCGAAGGTTACGACAGCAGGATCGACAGCAAGCAGAGGGGGACCCGACCGATCCCCGACTTG
* * * * * *
17421500 CCCATCCCGCCCCTCTAGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAAGCATAC
129 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTAACTTAGGCATAC
* * *
17421565 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAGGATC-AGACCAGACCGAGG
194 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT-CCAGTCTAAGATCGA-ATCAGACTGAGG
** * ** * * *
17421629 GTTACGATTGCACATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTCTCTTCGTTGGGGCACCA
257 GTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACAA
* * * * * * ** *
17421694 TCGTCAGAGCATC-ACAGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGGTCGGGGGGGCCGA
322 TCGCCGGAGCATCGTC-GGAGAACCTGACCGACGGCATTGGAGTTTCGGCGATC-GGGGGGCC--
* * * * *
17421758 GGGGGGTGTGCACACATGATGTGCGAAGGGTGCTGGTACTTCGCCCTTATATTGGCCCCCTGTCC
383 GGGGGGTGTGCGCACAAGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * *
17421823 CTCATCAAACCTCGAGAACTCACATCCCCTTAAAGAGAATTTGAGATTTTATAGGTTTGCTGCCA
448 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
*
17421888 GTAGCCATTAAAGTG-TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
513 GTAGCCATTAAAGTGTTC-GAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * * *
17421952 CAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACGAGGATCACGTCTACCATGTTT
577 CGAGTTTTTAGCT-AATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTT
* * * * * * *
17422017 GGGGTCAAAACT-CTTTCCGACAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTAAAAATCT
641 GGGGCCGAAACTCCTTT-CGAAAAAATTTTAAAAAATCCCGAATCGTAAAAAGTTTCAAAAATCA
* * * * *
17422081 TGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACTTGAAGGCTAAAGGGACCATTGTTT
705 TGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * * *
17422146 AAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATAAGGATATGCCTAAACCCACCTA
770 GAATTTACAAGCCATAAAAATGGCATTGGCAAGCA-AAA-AT-ATGA-A-GCCTAAACCCACCTA
* * ** * ** *
17422211 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT-CTTCCGACGTAGTGCCTGCCCGC-T
830 CCACCCTATCGATCCACGGCCTGCGCATCCTGTCTCTCCGGCCGACATAGTGCCCACCCGCGC
* * * * * * *
17422272 C-ACACGCTCGTTTTATCGGTTGGCTTAGGTATACGGAGTTCATTCCCAGTCTAAGATCAGACC-
1 CTGCCCGCTCATTTCATCGATTGGCTTAGGCATACAGAGTTCATT-CCAGTCTAAGATCAGACCG
** * * * * * *
17422335 AGACCGAAGGTTGTGACAGCAAGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTA
65 A-ACCGAAGGTTACGACAGCAGGATCGACAGCAAGCAGAGGGGGACCCGACCGATCCCCGACTTG
* * * * * *
17422400 TGCATCCCACCCTTCTGGCTGGCTGAGCACCTGCACGCTCGTTTCATGGGTTAACTTAGGCATAC
129 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTAACTTAGGCATAC
17422465 GGAGTTCATT-CCAG--T---C-TA---AG--------A-TC--AGATC--A--A-ACTGAGGGT
194 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAGTCTAAGATCGAATCAGACTGAGGGT
* * *
17422504 TACAACAGCACATGCTGGGCTCGGGCATGTGCTAGTGCTGCATTTTTCTTCGTCAGGGCACAATC
259 TACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACAATC
*
17422569 GCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGAG-TTCTGGCGATCGAGGGGGCCGGGG
324 GCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGAGTTTC-GGCGATCG-GGGGGCCGGGG
* *
17422633 GGTGTGCACACAAGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
387 GGTGTGCGCACAAGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* * * *
17422698 TCAAACCTCAAGAACTCACACCCCCTTAAAGAACATTTGAGATTTTACAAGTTTGCTGCCAGTGG
452 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
*
17422763 CCATTAAAGTG-TCTGAAATAGGGACACTTGTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
517 CCATTAAAGTGTTC-GAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * *
17422827 TTTTTAGCTGATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAACAAGTTTGGGGC
581 TTTTTAGCTAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGC
* * * ** * ** *
17422892 CAAAACTCCTTTCGACAAAATTGTAAAAAATCCCG-ATCCCCAAAAAGTTTCCAAAATTGTTAAA
646 CGAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAAT-CGTAAAAAGTTTCAAAAATCATGAAA
* *
17422956 AATAAAAAACGAGTGGTCTTGCCATGGAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
710 AATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* * * *
17423021 TACAAGCCATAGAAATGGCATTGGCATGCAGAAATTTGAAGCCTAAACCCACCTACCACCCTATC
775 TACAAGCCATAAAAATGGCATTGGCAAGCAAAAATATGAAGCCTAAACCCACCTACCACCCTATC
* * * *
17423086 GATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGTCATAGTGCCCGCCCGCCCGC
840 GATCCACGGCCTGCGCATCCTGTCTCTCCGGCCGACATAGTGCCCACCCG--CGC
* * * *
17423141 CTGCCCTCTCATTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCAGTCTAAGATCAGACTGG
1 CTGCCCGCTCATTTCATCGATTGGCTTAGGCATACAGAGTTCATTCCAGTCTAAGATCAGACCGA
* * * * * *
17423206 ATCGAAGTTTACGATAGCAGGATCGACAGCAAGCAGGGGGGGACCCGACCGATCCCTGACTTTCG
66 ACCGAAGGTTACGACAGCAGGATCGACAGCAAGCAGAGGGGGACCCGACCGATCCCCGACTTGCG
* * ** *
17423271 CATCCCGCCCTTCTGGCCGGCTGGGCGCCCGCACGCTCGTTTTGTGGGTTAACTTAGGCATATGG
131 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTAACTTAGGCATACGG
* * * *
17423336 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATTGGATCGGACCGAGGGTT
196 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC-AGTCTAAGATCGAATCAGACTGAGGGTT
* * * * **
17423401 -GGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCGTCG
260 ACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACAATCG
* * * *
17423465 CCAGAGCATC-ACAGGAGAACCTGATCGACGACATTAGG-GTTTCGGCGATCAGGGGGGCCGGGG
325 CCGGAGCATCGTC-GGAGAACCTGACCGACGGCATT-GGAGTTTCGGCGATC-GGGGGGCCGGGG
* **
17423528 GGTGTGCGCACATGATGTGCGATGGGTTATGGTACTTGGCCCTTATATTGGCCCCCTGA-CCCTC
387 GGTGTGCGCACAAGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT-ATCCCTC
*
17423592 ATCAAACCTCGAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
451 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
*
17423657 GCCATTAAAGTGTTCGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
516 GCCATTAAAGTGTTCGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
17423722 TTTTTAGCTAAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGG
581 TTTTTAGCT-AATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGG
*
17423787 CCGAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAATCGTAAAAAGTTTCAAAAATCACGAAA
645 CCGAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAATCGTAAAAAGTTTCAAAAATCATGAAA
* *
17423852 AATACAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTAAAGGGACCATTGTATGAATT
710 AATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
17423917 TACAAGCCATAAAAATGGCATTGGCAAGCAAAAATATGAAGATTGCCTAAACCCACCTACCACCC
775 TACAAGCCATAAAAATGGCATTGGCAAGCAAAAATATG-A-A--GCCTAAACCCACCTACCACCC
* * * *
17423982 TATCGATCCACGGCCTGTGCATCCTGTCTCTCCGGCCGACGTAGTGCCTACCCG-TC
836 TATCGATCCACGGCCTGCGCATCCTGTCTCTCCGGCCGACATAGTGCCCACCCGCGC
* * *
17424038 CTGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCG
1 CTGCCCGCTCATTTCATCGATTGGCTTAGGCATACAGAGTTCATT-CCAGTCTAAGATCAGACCG
* * * * *
17424103 AACCGAGGGTTGCGGCAGCAGGATCGGCAGCACA-CAGAAGGGGGACCCGATCGATCCCCGACTT
65 AACCGAAGGTTACGACAGCAGGATCGACAGCA-AGCAG-AGGGGGACCCGACCGATCCCCGACTT
* *
17424167 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATA
128 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTAACTTAGGCATA
*
17424232 CGGAGTTCATTCCCTGTCTAAGCATACGGAGTTCATTCCAGTCTAAGATCGAATCAGACTGAGGG
193 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAGTCTAAGATCGAATCAGACTGAGGG
* * *
17424297 TTACGATAGCTCATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACTAT
258 TTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACAAT
* * *
17424362 CGCTGGAGCATCGTCGGAGAACCTAACCGACGGCATTGGAGTTTCGACGATCGGGGGGCCCGAGG
323 CGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGAGTTTCGGCGATCGGGGGG-CCG-GG
* * **
17424427 GGGTATGTGCACAAGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTTACCCCCTATCCCTC
386 GGGTGTGCGCACAAGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* *
17424492 ATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGACTTTACAGGTTTGCTGCCAGTA
451 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* *
17424557 GCCATTAAAGTGTTCGAAATAGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCAAG
516 GCCATTAAAGTGTTCGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * *
17424622 CTTTTAGTTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTCGGGG
581 TTTTTAGCT-AATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGG
* * * *
17424687 CTGAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAA
645 CCGAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAATCGTAAAAAGTTTCAAAAATCATGAAA
* * *
17424752 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCA-TG--TG--CT
710 AATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* ** * * * ** * ** * * **
17424812 TA-AACCCACCT-ACCA--CCCTATCG-ATCCACAGCT-TG-CG-C--ATCCCATCTCT-CTGGC
775 TACAAGCCA--TAAAAATGGCAT-TGGCAAGCAAAAATATGAAGCCTAAACCCA-C-CTAC-CAC
* * * * * * * ** * ** ***
17424866 CGGC-ATAG-TGCC-TGCCCTCCCGCTTGCCCGCTCATTTCGTCGGTTGACTTAG-GCATATGAA
834 C--CTATCGAT-CCACGGCCT-GCGCAT-CCTG-TC-TCTC--CGGCCGACATAGTGCCCA-CCC
**
17424927 GTTC
889 GCGC
* * *** * * * ** * *
17424931 ATTCCCAG-TC-TAAGATCGA---AC---CG-A-ACCGAG--GGTTGC-GGC--AG--CAG---G
1 CTGCCC-GCTCATTTCATCGATTGGCTTAGGCATACAGAGTTCATTCCAGTCTAAGATCAGACCG
* * * ** ** *** **
17424976 ATCGGAA-G-CAC-ACAG-AGG-GGGAC--C---C-GATCGATCCCCGACTTGCGCATCCCACCC
65 AACCGAAGGTTACGACAGCAGGATCGACAGCAAGCAGAGGGGGACCCGAC---CG-ATCCC-CGA
* * ** * * **** * *
17425030 CTCTGGTCGGCTGAGTGCCCGTACACTCGTTTCTTGGGTTGA-CTTAGGCA--TTCGGAGTTCAT
125 CT-T-G-C-GC--A-T-CCCG-CCCCTC-TGGC--CGGCTGAGCGCCCGCACGCTC-G-TTTCAT
*** * * * *
17425092 -TCCT-AGTCTAAGCGTACGGAATTCATTCCCAGTCTAAG-AT-C-G-G---A---C---C---G
176 GGGTTAACT-TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAGTCTAAG
* * * *
17425139 ---G-AT----C-GAGGGTTGCGACAGCACATGCTAGGCTCGGGCATGTGCTGTTGCCGCATTTT
240 ATCGAATCAGACTGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTT
* * * * * *
17425195 TC-T--T-----CACTA-CGGCC----CATCGCCGAAGAACCTGACCGACAGCATTGGGGTTCCG
305 TCTTCGTCGGGGCACAATC-GCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGAGTTTCG
** * *
17425247 ATGATCGGGGGGGCC-GGGGG-GTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
369 GCGATC-GGGGGGCCGGGGGGTGTGCGCACAAGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* *
17425310 ATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTAT
433 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* * *
17425375 ACAGGTTTGCTGCCAGTAGCCATTAAAGTG-TCAAAAATGGGGACACTTTTTTCAAATGATCACA
498 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTC-GAAATAGGGACACTTTTTTCAAATGGTCACA
17425439 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATC
562 AAATCTTGTACACTTCGAGTTTTTAGCT-AATTGTTTTGTGCATGCCAACAAAAATACAAGGATC
* * * ** *
17425504 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAA-CGGCAAA
626 ACGTCTACCATGTTTGGGGCCGAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAATC-GTAAA
* ** *
17425568 AGGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
690 AAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* ** * * *** ** ***
17425633 AAGGGACCATGTGCT-TAAACCCACCTACCACCCTATCGACCCACAGC-TT-GC--GCATCCCAT
755 AAGGGACCAT-TG-TAT-GA---ATTTACAAGCC-AT--AAAAATGGCATTGGCAAGCA-AAAAT
* ** ** * *** ** * * * * * **
17425693 CT-CTG--T-AACCGGCATAGTGCCC-GCCCA-CC-CGTCC-GC-CAGCTTGTTTCAT-CGGTTG
810 ATGAAGCCTAAACCCACCTACCACCCTATCGATCCACGGCCTGCGCATCCTGTCTC-TCCGGCCG
* * ** * *
17425748 GCTTAG-GCATA-CAGAGTTC
874 ACATAGTGCCCACCCGCG--C
* * * ** * * ** *
17425767 GTTCCCAG-TC---T-A-AGATT-G---AACCAAACCAGGGGTTACA--GGAG-C-AAGATC-GG
1 CTGCCC-GCTCATTTCATCGATTGGCTTAGGCATA-CA-GAGTT-CATTCCAGTCTAAGATCAGA
* * * ** * * * ***
17425817 CAGCACGCAAAGG--GGGAC--C-CGACCGATC--C---CCG-GCTTG---CG--C-AT-CCCG-
62 CCGAAC-CGAAGGTTACGACAGCAGGATCGA-CAGCAAGCAGAGGGGGACCCGACCGATCCCCGA
* * * ** * ** * * **** *
17425863 --T-C-CCT-CTGGCCGACTGAG-C-GC---CCGCATGCTCGTTTCGTGGGTTGAG-T----TAG
125 CTTGCGCATCCCGCCCCTCTG-GCCGGCTGAGCGCCCGCACG-CTCGTTTCATGGGTTAACTTAG
17425913 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---A---C---C---G---G-A-C---C-
188 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAGTCTAAGATCGAATCAGACT
* * * * * ** * * *
17425953 GAGGGCTGC-AGCAGCAGATGCTAGGCTCGGGCATTTGCTGGTGCCACAGTTTTCCTCATCGGGG
253 GAGGGTTACGA-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGG
* * * * * * *
17426017 CACCATCGTCAGAGCATCGTCAGG-GAACTTGACCGGCGGCATT-AAGGTTTCGGCGTTCGGGGG
317 CACAATCGCCGGAGCATCGTC-GGAGAACCTGACCGACGGCATTGGA-GTTTCGGCGATCGGGGG
** * * * **
17426080 GCTAGGGGGTGTGCCCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATACTCACCCCCTA
380 GCCGGGGGGTGTGCGCACAAGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * * *
17426145 TCCCTTATCAAACCTCAAGAACTCACACCTCCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTG
445 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
17426210 CCAATAG-CAGTTAAAGTG-TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
510 CCAGTAGCCA-TTAAAGTGTTC-GAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * * * * *
17426273 ACTTAGAGTTTTTAGCTGAATTTTTTTGTCCTTGCCAAAAAAAATACAAGGATCATGTCTACCAA
573 ACTTCGAGTTTTTAGCT-AATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAT
* * * * * *
17426338 GTTTGGGGCCGAAACTACTTCCAAAAAAATTTTTAAAAATCCCGAACCGCAAAAAGTTTCAAAAA
637 GTTTGGGGCCGAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAATCGTAAAAAGTTTCAAAAA
* *
17426403 TCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
702 TCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * *
17426468 TAAGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
767 TATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAAAAATATG-A-A---GCCTAAACCCAC
* * * * * *
17426533 CTACCACCCTATCGATCCACAGCTTGCGCATCCCG-CGTCTCTGGCCGACGTAGTGCCCGCCCGC
827 CTACCACCCTATCGATCCACGGCCTGCGCATCCTGTC-TCTCCGGCCGACATAGTGCCCACCCGC
17426597 -C
891 GC
* * * * * * *
17426598 C-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTCAGATCAAATC-
1 CTGCCCGCTCATTTCATCGATTGGCTTAGGCATACAGAGTTCATT-CCAGTCTAAGATCAGACCG
* * * * *
17426661 AGACC-AAGGGTTGCGGCAGCAAGATCGATAGCACA-CAGAGGGGGACCC-AGCTGATCCCC-AG
65 A-ACCGAA-GGTTACGACAGCAGGATCGACAGCA-AGCAGAGGGGGACCCGA-CCGATCCCCGA-
* * * * * *
17426722 CTTGTGCATCCCGCCCCTCTGGTCGGCTGAGTGCCCGCTCGCTTGTTT--TGTGGTTGACTTAGG
125 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATG-GGTTAACTTAGG
* *
17426785 CATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGAT-AGGAC
189 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT-CCAGTCTAAGATCGAATCA-GAC
* * **
17426849 TGAGGGTTACGGCAGCACATGCTGGGCTCGGGCACGTGCTGGTGCCACATTTTTCTTCGTCGGGG
252 TGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGG
* * * *
17426914 CACCATCGCTGGAGCATCGCCGGAGAACCTGACCGACGGCATTGTG-GTTTCGGTGATCGGGGGG
317 CACAATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTG-GAGTTTCGGCGATC-GGGGG
* * *
17426978 GCCGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTA
380 GCCGGGGGGTGTGCGCACAAGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
17427043 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
445 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
17427108 TCAGTAGCCATTAAAGTG-TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
510 CCAGTAGCCATTAAAGTGTTC-GAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * *
17427172 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAG
574 CTTCGAGTTTTTAGCT-AATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCATG
* * ** * **
17427237 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTTGAAAAT
638 TTTGGGGCCGAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAATCGTAAAAAGTTTCAAAAAT
* * *
17427302 CGTG-AAAA-AAAAAAGGAGTCGTCTTGCCATGAAACTTCACGTGAAGTCTTAAGGGACCATTGT
703 CATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* * *
17427365 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTACCTAAACCCACC
768 ATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAAAAATATG-A-A-G--CCTAAACCCACC
* * * * *
17427430 TACCACCCTATCGATCCACGGCTTGCGCAT-CTCGTCTCTCTGGCCGGCGTAGAG----CCCGC-
828 TACCACCCTATCGATCCACGGCCTGCGCATCCT-GTCTCTCCGGCCGACATAGTGCCCACCCGCG
17427489 C
892 C
* * * * * * * *
17427490 C-GCCC-CTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTTATTACCAATCTAAAATTAGACC
1 CTGCCCGC-TCATTTCATCGATTGGCTTAGGCATACAGAGTTCATT-CCAGTCTAAGATCAGACC
** ** * * *
17427553 GAACC-AAGGGTTGTGGTAGCAGGATCGGA-AGCATGCCA-AGGGGAACCCGGCCGATCCCCGAC
64 GAACCGAA-GGTTACGACAGCAGGATC-GACAGCAAG-CAGAGGGGGACCCGACCGATCCCCGAC
* * * **
17427615 TTGCGCATCCCGCCCCTCTGGCCGGCTGAACGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCA
126 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTAACTTAGGCA
17427680 TACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---A---C---C--AG---G---C---C-GAG
191 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAGTCTAAGATCGAATCAGACTGAG
* * * * * * **
17427720 GGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTCCTCACCGGGG--C-
256 GGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACA
* * **
17427782 A----C----CATCGTCGGAGAACTTGATCGACGGCATTAGG-G-TTC--CGA-C----GATCGG
321 ATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATT-GGAGTTTCGGCGATCGGGGGGCCGG
* * * *
17427830 GGGGTGTGTGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTGTCCCT
385 GGGGTGTGCGCACAAGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* *
17427895 CATGAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
450 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* * * * *
17427960 TGCCATTAAAGTG-TCTGAAATGGGGACACTGTTTTCAAATGGTCACAAAATCTTGTTCACATCG
515 AGCCATTAAAGTGTTC-GAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * * * * * *
17428024 AGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATAAAAGGATCATGTCTACCAAGTCTAG
579 AGTTTTTAGCT-AATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGG
* * * * * * * *
17428089 GTCCAAAACTTC-TTCTGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGATTCGAAAATCGTG
643 GGCCGAAACTCCTTTC-GAAAAAATTTTAAAAAATCCCGAATCGTAAAAAGTTTCAAAAATCATG
* *
17428153 AAAAATAAAAAATGAGTCGTCGTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
707 AAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* *
17428218 ATTTACAAGCCATAAAAATGGCATTGGCATGCGAAAATATGAAGATGTACCTAAACCCACCTACC
772 ATTTACAAGCCATAAAAATGGCATTGGCAAGCAAAAATATG-A-A-G--CCTAAACCCACCTACC
* * * * * * *
17428283 ACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC-C
832 ACCCTATCGATCCACGGCCTGCGCATCCTGTCTCTCCGGCCGACATAGTGCCCACCCGCGC
* ** * * * * *
17428343 C-GCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTAACAGTCTAAGATCGGATCG
1 CTGCCCGCTCATTTCATCGATTGGCTTAGGCATACAGAGTTCATT-CCAGTCTAAGATCAGACCG
* * * * * * *** * *
17428407 GATCGAAGGTTGCGATAGCAGGATTGACAGCATGCAGA-GGGGACCCTGGTTGATCCCCGGCTTA
65 AACCGAAGGTTACGACAGCAGGATCGACAGCAAGCAGAGGGGGACCC-GACCGATCCCCGACTTG
* * * * *
17428471 CGCAT-CTGCCCCTCTGGCTGGCTGAGCGCCCACACGCTCGTTTCATGGTTTGACTTAGGCATAC
129 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTAACTTAGGCATAC
* * * * *
17428535 GAAGTTCATTCCCAGTCTAAGCATACCGACTTCATTCCCAGTCTAAGATC-AGATCGGA-TCGAC
194 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT-CCAGTCTAAGATCGA-ATCAGACT-GAG
* * * * * *
17428598 TGTTACGGCAACACATGCTGGGCTCGGGCATGTGCTAGAGCTGCATTTTTCTTCGTCGGGGCACC
256 GGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACA
* * * * *
17428663 ATCGCCTGAGCATCGCCAGAGAACCTGACCGACGGCATTGG-GGTTCTGACGATCGGGGGGGCCG
321 ATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGAGTTTC-GGCGATC-GGGGGGCCG
* * * * * *
17428727 GGGGGTGTGCGCACATGATGTACGATGGGTGCAGGTGCTTGGCCCTTATATTGGTCCCCTACCCC
384 GGGGGTGTGCGCACAAGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* *
17428792 TCATCAAACCTTGAGAACTCACACCCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAG
449 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* *
17428857 TAGCAATTAAAGTG-TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
514 TAGCCATTAAAGTGTTC-GAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
*
17428921 GAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
578 GAGTTTTTAGCT-AATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTG
* * * * * * **
17428986 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCAAACCGTTAAAAGTTTTGAAAATCATG
642 GGGCCGAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAATCGTAAAAAGTTTCAAAAATCATG
* * * *
17429051 AAAAATAGAAAATGAGTCGTC-T-CCGTGGAAACTGCTC-CGTGAAGGTTTAAGGGACCATTG-A
707 AAAAATAAAAAACGAGTCGTCTTGCCAT-GAAACT--TCACGTGAAGGCTTAAGGGACCATTGTA
*
17429112 TGAATTTACAA-CCATAAAAATGGCATTGGGC--GCACAGAAATATACGAAGATGTGCCTAAGGC
769 TGAATTTACAAGCCATAAAAATGGCATT-GGCAAGCA-A-AAATAT--G-A-A---GCCTAA-AC
* * * * * * *
17429174 CCACCTACCACCGTATCAAT-CACGGCTTGCGCATCC--TCTCTGCTGACCGGCGTAGTGCCCAA
823 CCACCTACCACCCTATCGATCCACGGCCTGCGCATCCTGTCTCT-CCGGCCGACATAGTGCCC-A
*
17429236 CCCG-TC
886 CCCGCGC
* * * * * * *
17429242 C-GCCCGTCTCGTTTCGTCGGTTGGAACTTAGGCATACGGAGTGCATTACCTGTCTAAGATCGGA
1 CTGCCCG-CTCATTTCATCGATTGG--CTTAGGCATACAGAGTTCATT-CCAGTCTAAGATCAGA
* * * * * ** * * *
17429306 TCGGATCGAGGGTTGC-AGCAGCAGGATCGACAGCTTGTAGAGGGGGACCTGACCGATCCCCGGC
62 CCGAACCGAAGGTTACGA-CAGCAGGATCGACAGCAAGCAGAGGGGGACCCGACCGATCCCCGAC
* * * * *
17429370 TTGCGCATCCCGCCTCTCTGGCTGGCTGAGTGCCCGCACGCTCATTTCATGGGTTGACTTAGGCA
126 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTAACTTAGGCA
* *
17429435 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATC-AGACCAGA-TC
191 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT-CCAGTCTAAGATCGA-ATCAGACT-
* ** * *
17429498 GAGGGTTGCGGTAGCACATACTGGGCTCGGGCATGTGCTGGTGCCT-CATTTTTCTTCGTCGAGG
253 GAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTG-CTGCATTTTTCTTCGTCGGGG
* ** ** * * * * * * *
17429562 CACCATCATCGGAGCATCACCGAAAAATCGGACCGACGGCATT-AAGGTTCCGGTGATCGGGGGA
317 CACAATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGA-GTTTCGGCGATCGGGGG-
* * * * * *
17429626 GACGGCGGGGTGTGCGCACATGATGTGCGATGAGTGCTGGTACTTTGCCCTTATACTGGCCTCCT
380 GCCGG-GGGGTGTGCGCACAAGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * * * * * *
17429691 ATGCTTCATCAAACCTCAACAACTCACA-CCCCTTAAAGACCATTTCAGATTTTACAAGTTTGCT
444 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * * *
17429755 GCCAGTAGCTATTAAAGTG-TCTGAAATGGGGACACTCTTTTCAAATGGTTACAAAATCTTGTAC
509 GCCAGTAGCCATTAAAGTGTTC-GAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * *
17429819 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGAATCACATCTACCAA
573 ACTTCGAGTTTTTAGCT-AATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAT
** * * * * **
17429884 GTTTGGGGCAAAAAATCCTTCCAAAAAAATTTTAAAAAAATCCCGAACCACAAAAAGTTTCAAAA
637 GTTTGGGGCCGAAACTCCTTTCGAAAAAATTTT-AAAAAATCCCGAATCGTAAAAAGTTTCAAAA
* * * *
17429949 ATCATGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGATTAAGGGACCATT
701 ATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* ** * *
17430014 GTATGAATTTACAAGGC------AT-GCA---G-AA-CTATGAAGATG-TGCCTAAACCCACCTA
766 GTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGC-AAAAATATGAAGCCTAAACCCACCTA
* * * * * * *
17430066 CCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG----CTCGC-C
830 CCACCCTATCGATCCACGGCCTGCGCATCCTGTCTCTCCGGCCGACATAGTGCCCACCCGCGC
* * * * * * ** *
17430124 C-GCCTGCTCATTTCGTCGGTCGGCTTATGCATACGGAGTTCATTCATCAGTCTAAGATTGGATC
1 CTGCCCGCTCATTTCATCGATTGGCTTAGGCATACAGAGTTCATTC--CAGTCTAAGATCAGACC
* * * *
17430188 -AGACCGAGGGTTACGGCAGCAGGATCGATAGCAGGCAGAGGGGGACCCGA-C--T-------TT
64 GA-ACCGAAGGTTACGACAGCAGGATCGACAGCAAGCAGAGGGGGACCCGACCGATCCCCGACTT
* * * * *
17430242 -CGCATCCTGCCCCTCTGGCCGGCTGAGCGCTCGTACGCTCGTTTCGTGGGTTGACTTAGGCATA
128 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTAACTTAGGCATA
*
17430306 CGGAGTTCATTCCCAG--T---C-TA---A----A----A-TC---G---G-ATCAGACCGAGGG
193 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAGTCTAAGATCGAATCAGACTGAGGG
* * * * * ** * *
17430346 TTACAAAAACACATACTGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCGTCGAGGCACCAT
258 TTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACAAT
* * * * * *
17430411 CACCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGTG-GTTCCGGTGATCGGGGTGGTCGGG
323 CGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTG-GAGTTTCGGCGATCGGGG-GG-C-CG
* * *
17430475 GGGGGTATGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
384 GGGGGTGTGCGCACAAGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
17430540 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CAG
449 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* * * *
17430604 TAGCCATCGAAA-TGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTCC
514 TAGCCAT-TAAAGTGTTCGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * ** *
17430668 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCCAAAAAGTTTG
578 GAGTTTTTAGCT-AATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTG
* * * * * * *
17430733 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAGGTTTCAAAAATCGTG
642 GGGCCGAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAATCGTAAAAAGTTTCAAAAATCATG
** * *
17430798 AAAAATTGAAAACGAGTCATCTTGCCATGAAACTTCAGGTGAAGGCTTAAGGGACCATTGTATGA
707 AAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
** * *
17430863 ATTTACAAGCCATAAAAATTTCATTGGCACA-CAGAAATATGAAGATGTGCATAAACCCACCTAC
772 ATTTACAAGCCATAAAAATGGCATTGGCA-AGCAAAAATATG-A-A---GCCTAAACCCACCTAC
* * ** * * * * * * *
17430927 CACCCTATCGATCCACGGCTTGCGCAGCCCCTATCTCTGGCCGGCGTAGTGCCCGCCTGC-T
831 CACCCTATCGATCCACGGCCTGCGCATCCTGTCTCTCCGGCCGACATAGTGCCCACCCGCGC
* * ** * * *
17430988 C-GCTCGCTCGTTTTGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTGTAAGATCGGACCG
1 CTGCCCGCTCATTTCATCGATTGGCTTAGGCATACAGAGTTCATT-CCAGTCTAAGATCAGACCG
* * * ** ** *
17431052 AACCG-AGGTT-TGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCTGGGCTT
65 AACCGAAGGTTACG-A-CAGCAGGATCGACAGCAAGCAGAGGGGGACCCGACCGATCCCCGACTT
* * * * *
17431115 GCGCATCTCGCACCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
128 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTAACTTAGGCATA
* * * *
17431180 CGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATTGGATCAGACAT-AG
193 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT-CCAGTCTAAGATCGAATCAGAC-TGAG
* * * ** ** *
17431244 GGTTGCTG-CAGCACATGCTAGGCTCCGGCATGTGCTGGTGCCACATTTTTCTTCACCGAGGCAC
256 GGTTAC-GACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCAC
* * * ** * *
17431308 CATCGCCAGAGCATCGCCGGAGAACCTGACCGTTGGCATTGGGGTTCCGGCGATCGGGGGGGCCC
320 AATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGAGTTTCGGCGATC-GGGGGG-CC
* *
17431373 GGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
383 -GGGGGGTGTGCGCACAAGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
17431438 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
447 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* *
17431503 AGTAGCCATTAAAGTG-TCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
512 AGTAGCCATTAAAGTGTTC-GAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* ** * * *
17431567 TCGAGTTTTTAGCTGAATTTTTTTCCGCATGCCAAAAAAAATACAAGGAACATGTCTACCAAT-T
576 TCGAGTTTTTAGCT-AATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC-ATGT
* * * ** * *
17431631 TTGGGGACAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTCAAAAATC
639 TTGGGGCCGAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAATCGTAAAAAGTTTCAAAAATC
* *
17431696 ATAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
704 ATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* *
17431761 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
769 TGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAAAAATATG-A-A---GCCTAAACCCACCT
* * * ** ** * *
17431826 ACCACCCTATCGATCCACGGCTTGTGCGTCCCATCTCTTTGGCC-AGCGTAGTGCCCGCCCGCAC
829 ACCACCCTATCGATCCACGGCCTGCGCATCCTGTCTCTCCGGCCGA-CATAGTG-CC-CAC-C-C
17431890 GATCGC
889 G--CGC
* * * * * *
17431896 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCATTCTAAGATTAGACCG
1 CTGCCCGCTCATTTCATCGATTGGCTTAGGCATACAGAGTTCATT-CCAGTCTAAGATCAGACCG
* * ** * ** * * * * *
17431961 AGCCGAGGGTTGGGGCAGCAGGATCGGTAGCACGTAGAGGGGGACCCG-TCGAGCCACGACTTGC
65 AACCGAAGGTTACGACAGCAGGATCGACAGCAAGCAGAGGGGGACCCGACCGATCCCCGACTTGC
* * * * *
17432025 GCATCCCACCCTTATGGCCGGCTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACG
130 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTAACTTAGGCATACG
* * * *
17432090 GAGTTCATTCCCAATCTAACCATACGGAGTTCATTCCCAGTCTAAGATC-AGACCAGACCGAGGG
195 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT-CCAGTCTAAGATCGA-ATCAGACTGAGGG
** * * ** *
17432154 TGGCGGCAGCACATGCTGGGCTCGGGCAAGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCAT
258 TTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACAAT
* * * * *
17432219 CACTGGAGCATCGTCGGAGAACCTGATCGACGACATTTGG-G-TTCTGACGATCGGGGGGGCCGG
323 CGCCGGAGCATCGTCGGAGAACCTGACCGACGGCA-TTGGAGTTTC-GGCGATC-GGGGGGCCGG
* * *
17432282 GGGGCGTGCGAACAGGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCT
385 GGGGTGTGCGCACAAGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
*
17432346 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGCTTTGCTGCCAGT
450 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* * * *
17432411 AGCCATTAAAGTG-TCTGAAATGGGGACACTATTTTCAAATGGTCACAAAATCCTATACACTTCG
515 AGCCATTAAAGTGTTC-GAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * * *
17432475 AGTTTTTAGCTGAATTGTTTTGTACATGGCAACAAAAATACAAGGATCACG-CTTACCAAGTTTC
579 AGTTTTTAGCT-AATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC-TACCATGTTTG
* * * ** * * ** *
17432539 GGCCCGAAACTCCTTCCGAAAAAATTTTGAAAAATCTTGAACCGCAAAAAGTTTTGAAAATCGTG
642 GGGCCGAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAATCGTAAAAAGTTTCAAAAATCATG
* * *
17432604 AAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAACGGG-CCATTGTATG
707 AAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA-GGGACCATTGTATG
* * *
17432668 AATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTAC
771 AATTTACAAGCCATAAAAATGGCATTGGCAAGCAAAAATATG-A-A---GCCTAAACCCACCTAC
* * ** * * * *
17432733 CACCCTATCGATCCACGGCTTGTGCATCCCATCTCTCTGGCCCG-CGTGGTGCCCGCCCGCCCGC
831 CACCCTATCGATCCACGGCCTGCGCATCCTGTCTCTCCGG-CCGACATAGTGCCCACCCG--CGC
* * * * * * **
17432797 CCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCG
1 CTGCCCGCTCATTTCATCGATTGGCTTAGGCATACAGAGTTCATT-CCAGTCTAAGATCAGACCG
* ** * * * * ** *** **
17432862 -ACCGAGGGTTGGGGCAGCATGATCGGCAGCATGCAGAAAGGGACCCGGTTGATCCATGACTTGC
65 AACCGAAGGTTACGACAGCAGGATCGACAGCAAGCAGAGGGGGACCCGACCGATCCCCGACTTGC
* * * * * * *
17432926 GCATCCCACCCTTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTCAGGCATATG
130 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTAACTTAGGCATACG
* * * * * * *
17432991 GAGTTCATTTCCAATCTAACCATACGAAGTTCATTCCCAGTCTAAGATC-AGACCGGACCGAGGG
195 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT-CCAGTCTAAGATCGA-ATCAGACTGAGGG
* * * * * *
17433055 TTGCGGCAGCACATGCTGGGCTCGGGCAAGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACAAT
258 TTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACAAT
* * * * * * * * * *
17433120 CACCGAAGCGTCG-CGGAGAACTTGACTGGCAGCATTAGG-G-TTCTGACAATCGGGGGTCCCGG
323 CGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATT-GGAGTTTC-GGCGATCGGGGG-GCC--
* *
17433182 GGGGGGTGTGCGCACATA-ATGTGTGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATC
383 GGGGGGTGTGCGCACA-AGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
*
17433246 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTTGCTGC
447 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG-TTTGCTGC
* *
17433311 CAGTAGCCATTAAAGTG-TCTAAAATGGGGACACTTTTTTCAAACT-GTCACAAAATCTTGTACA
511 CAGTAGCCATTAAAGTGTTC-GAAATAGGGACACTTTTTTCAAA-TGGTCACAAAATCTTGTACA
* * * *
17433374 CTTTGAGTTTTTAGCTGAATT-TTTTGGTGCATGCCAACAAAAATACAAGGATCATGTCTACAAA
574 CTTCGAGTTTTTAGCT-AATTGTTTT-GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAT
* * * * * *
17433438 GTTTGGGGACAAAACGCCATCCAAAAAAATTTTAAAAAATCCCGAAT
637 GTTTGGGGCCGAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAAT
17433485 TGCAGAGGGG
Statistics
Matches: 9442, Mismatches: 1244, Indels: 1051
0.80 0.11 0.09
Matches are distributed among these distances:
809 1 0.00
810 84 0.01
811 1 0.00
813 5 0.00
814 2 0.00
815 6 0.00
816 5 0.00
817 4 0.00
818 17 0.00
819 6 0.00
820 2 0.00
821 9 0.00
822 40 0.00
823 342 0.04
824 2 0.00
825 1 0.00
826 1 0.00
827 11 0.00
828 2 0.00
829 3 0.00
830 8 0.00
831 4 0.00
832 15 0.00
833 4 0.00
834 5 0.00
835 9 0.00
836 375 0.04
837 10 0.00
838 7 0.00
839 49 0.01
840 15 0.00
841 10 0.00
842 6 0.00
843 229 0.02
844 226 0.02
845 46 0.00
846 18 0.00
847 313 0.03
848 10 0.00
849 173 0.02
850 9 0.00
851 52 0.01
852 84 0.01
853 107 0.01
854 12 0.00
855 5 0.00
856 32 0.00
857 4 0.00
858 3 0.00
859 1 0.00
860 64 0.01
861 9 0.00
862 5 0.00
863 56 0.01
864 54 0.01
865 62 0.01
866 25 0.00
867 64 0.01
868 16 0.00
869 214 0.02
870 228 0.02
871 227 0.02
872 9 0.00
873 116 0.01
874 82 0.01
875 13 0.00
876 36 0.00
877 11 0.00
878 65 0.01
879 24 0.00
880 61 0.01
881 18 0.00
882 13 0.00
883 1 0.00
884 10 0.00
885 24 0.00
886 33 0.00
887 24 0.00
888 14 0.00
889 35 0.00
890 5 0.00
891 10 0.00
892 167 0.02
893 63 0.01
894 18 0.00
895 298 0.03
896 399 0.04
897 183 0.02
898 729 0.08
899 277 0.03
900 945 0.10
901 612 0.06
902 145 0.02
903 467 0.05
904 308 0.03
905 430 0.05
906 60 0.01
907 6 0.00
908 221 0.02
909 96 0.01
910 4 0.00
911 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (892 bp):
CTGCCCGCTCATTTCATCGATTGGCTTAGGCATACAGAGTTCATTCCAGTCTAAGATCAGACCGA
ACCGAAGGTTACGACAGCAGGATCGACAGCAAGCAGAGGGGGACCCGACCGATCCCCGACTTGCG
CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTAACTTAGGCATACGG
AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAGTCTAAGATCGAATCAGACTGAGGGTTA
CGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACAATCGC
CGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGAGTTTCGGCGATCGGGGGGCCGGGGGGTG
TGCGCACAAGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
TAAAGTGTTCGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
AGCTAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCGAAA
CTCCTTTCGAAAAAATTTTAAAAAATCCCGAATCGTAAAAAGTTTCAAAAATCATGAAAAATAAA
AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
CCATAAAAATGGCATTGGCAAGCAAAAATATGAAGCCTAAACCCACCTACCACCCTATCGATCCA
CGGCCTGCGCATCCTGTCTCTCCGGCCGACATAGTGCCCACCCGCGC
Found at i:17425666 original size:836 final size:835
Alignment explanation
Indices: 17423964--17431756 Score: 5610
Period size: 898 Copynumber: 9.0 Consensus size: 835
17423954 GAAGATTGCC
* * * ** * * *
17423964 TAAACCCACCTACCACCCTATCGATCCACGGCCTGTGCATCCTGTCTCTCCGGCCGACGTAGTGC
1 TAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCATCTCTCTGGCCGGCATAGTGC
* * * *
17424029 CT----ACCCGTCCTGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTC
66 CTGCCCTCCCG-CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAGA-AGTTCATTCCCAGTC
* * * *
17424090 TAAGATCGGACCGAACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAAGGGGGACCCGATC
129 TAAGATCGAACCGAACCAAGGGTTGCGGCAGCAGGATCGGAAGCACACAG-AGGGGGACCCGACC
17424155 GATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCATGGGTT
193 GATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTC-TGGGTT
*
17424220 GACTTAGGCATACGGAGTTCATTCCCT-GTCTAAGCATACGGAGTTCATT-CCAGTCTAAGATCG
257 GACTTAGGCATTCGGAGTTCATT-CCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * * * * *
17424283 AATCAGACTGAGGGTTACGATAGCTCATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTT
321 GACCGGAC-GAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC-T
** * * *
17424348 CGTCGGGGCACTATCGCTGGAGCATCGTCGGAGAACCTAACCGACGGCATTGGAGTTTCGACGAT
384 --T-----CACTA-CG--GGCCCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTTCGACGAT
* * * *
17424413 CGGGGGGCCCGAGGGGGTATGTGCACAAGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTT
439 CGGGGGGGCCG-GGGGG--TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* * *
17424478 ACCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGACTTTACAG
501 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* *
17424543 GTTTGCTGCCAGTAGCCATTAAAGTGT-TCGAAATAGGGACACTTTTTTCAAATGGTCAAAAAAT
566 GTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * * *
17424607 CTTGTACACTTCAAGCTTTTAGTTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
630 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* * **
17424672 CTACCATGTTCGGGGCTGAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTT
695 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTT
* *
17424737 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGG
760 TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
17424802 ACCATGTG-CT
825 ACCATGTGACT
17424812 TAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCATCTCTCTGGCCGGCATAGTGC
1 TAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCATCTCTCTGGCCGGCATAGTGC
** * *
17424877 CTGCCCTCCCGCTTGCCCGCTCATTTCGTCGGTTGACTTAGGCATATGAAGTTCATTCCCAGTCT
66 CTGCCCTCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA-GAAGTTCATTCCCAGTCT
* *
17424942 AAGATCGAACCGAACCGAGGGTTGCGGCAGCAGGATCGGAAGCACACAGAGGGGGACCCGATCGA
130 AAGATCGAACCGAACCAAGGGTTGCGGCAGCAGGATCGGAAGCACACAGAGGGGGACCCGACCGA
* * * *
17425007 TCCCCGACTTGCGCATCCCACCCCTCTGGTCGGCTGAGTGCCCGTACACTCGTTTCTTGGGTTGA
195 TCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTC-TGGGTTGA
* *
17425072 CTTAGGCATTCGGAGTTCATTCCTAGTCTAAGCGTACGGAATTCATTCCCAGTCTAAGATCGGAC
259 CTTAGGCATTCGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* *
17425137 CGGATCGAGGGTTGCGACAGCACATGCTAGGCTCGGGCATGTGCTGTTGCCGCATTTTTCTTCAC
324 CGGA-CGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCAC
* * * *
17425202 TAC-GGCCCATCGCCGAAGAACCTGACCGACAGCATTGGGGTTCCGATGATCGGGGGGGCCGGGG
388 TACGGGCCCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGG
* *
17425266 GGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATC
453 GGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
*
17425331 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTATACAGGTTTGCTGCCAGTAGCC
518 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
** *
17425396 ATTAAAGTGTCAAAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTT
583 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
*
17425461 TTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
648 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * * *
17425526 AAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACGGCAAAAGGTTTCAAAAATTGTGAAAAAT
713 AAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAAT
17425591 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATGTG-CT
778 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATGTGACT
* * **
17425648 TAAACCCACCTACCACCCTATCGACCCACAGCTTGCGCATCCCATCTCTGTAACCGGCATAGTGC
1 TAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCATCTCTCTGGCCGGCATAGTGC
* * * * * * * *
17425713 CCGCCCACCCGTCCGCCAGCTTGTTTCATCGGTTGGCTTAGGCATACAGAGTTCGTTCCCAGTCT
66 CTGCCCTCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAGA-AGTTCATTCCCAGTCT
* * * * * * * *
17425778 AAGATTGAACCAAACCAGGGGTTACAGG-AGCAAGATCGGCAGCACGCAAAGGGGGACCCGACCG
130 AAGATCGAACCGAACCAAGGGTTGC-GGCAGCAGGATCGGAAGCACACAGAGGGGGACCCGACCG
* * * * *
17425842 ATCCCCGGCTTGCGCATCCCGTCCCTCTGGCCGACTGAGCGCCCGCATGCTCGTTTC---G-TG-
194 ATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCTGGGTTGA
*
17425902 ----GG--TT--GAG-----T--TAG-----GCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
259 CTTAGGCATTCGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* * * * * * *
17425947 CGGACCGAGGGCTGC-AGCAGCAGATGCTAGGCTCGGGCATTTGCTGGTGCCACAGTTTTCCTCA
324 CGGA-CGAGGGTTGCGA-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCA
* * * ** * *
17426011 -T-CGGGGCACCATCGTCAGAGCATCGTCAGGGAACTTGACCGGCGGCATTAAGGTTTCGGCGTT
387 CTAC-GGGC-CCA---TC---GC--CG---GAGAACCTGACCGACGGCATTGGGGTTTCGACGAT
* * * **
17426074 C-GGGGGGCTAGGGGGTGTGCCCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATACTCA
439 CGGGGGGGC-CGGGGG-GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* * * *
17426138 CCCCCTATCCCTTATCAAACCTCAAGAACTCACACCTCCTGAAAGAGCATTTGAGATTTTACAGG
502 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
*
17426203 TTTGCTGCCAATAG-CAGTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
567 TTTGCTGCCAGTAGCCA-TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * * * *
17426267 TTGTACACTTAGAGTTTTTAGCTGAATTTTTTTGTCCTTGCCAAAAAAAATACAAGGATCATGTC
631 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* * * * * *
17426332 TACCAAGTTTGGGGCCGAAACTACTTCCAAAAAAATTTTTAAAAATCCCGAACCGCAAAAAGTTT
696 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTT
* *
17426397 CAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
761 CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
*
17426462 CCATTGTAAGAATT
826 CCA-TGT--G-ACT
* ** ** ** * *
17426476 TACAAGCCA--TAAAAATGGCATTGGCATGCAGAAATATGA-AGATGTGCCTAAACCCACCTACC
1 TA-AACCCACCT-ACCA---CCCT---AT-C-G--AT-CCACAGCT-TG------CGCA--T---
* * * * * *
17426538 ACCCTATCGATCCACAGCTTGCGCATCCCGCGTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCC
41 -CCC-ATC--T---C-TC-TG-G----CCG-G-C-ATAG-TG-C---CTGCCCTCCCGCCCGCCC
* * * *
17426603 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTCAGATCAAATC-AGACCA
84 GCTCGTTTCGTCGGTTGGCTTAGGCATA-GAAGTTCATTCCCAGTCTAAGATCGAACCGA-ACCA
* * *
17426667 AGGGTTGCGGCAGCAAGATC-GATAGCACACAGAGGGGGACCC-AGCTGATCCCC-AGCTTGTGC
147 AGGGTTGCGGCAGCAGGATCGGA-AGCACACAGAGGGGGACCCGA-CCGATCCCCGA-CTTGCGC
* * * *
17426729 ATCCCGCCCCTCTGGTCGGCTGAGTGCCCGCT-CGCTTGTTT-TGTGGTTGACTTAGGCATACGG
209 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCG-TACGCTCGTTTCTG-GGTTGACTTAGGCATTCGG
* * **
17426792 AGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGATAGGACTGAGGGTT
272 AGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC-GAGGGTT
* * * * *
17426857 ACGGCAGCACATGCTGGGCTCGGGCACGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCG
336 GCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC-T--T-----CACTA-CG
** * **
17426922 CTGGAGCATCGCCGGAGAACCTGACCGACGGCATTGTGGTTTCGGTGATCGGGGGGGCCGGGGGG
392 --GGCCCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGGCC-GGGGG
* *
17426987 TGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATC
454 -GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
*
17427052 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCC
518 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
17427117 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
583 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
*
17427182 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCA
648 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* **
17427247 AAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAA-
713 AAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAAT
* * *
17427311 A-AAAAGGAGTCGTCTTGCCATGAAACTTCACGTGAAGTCTTAAGGGACCATTGTATGAATT
778 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA-TG--TG-ACT
* * * *** * * *
17427372 TACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTACCTAAACCCA-CCTAC-CA
1 TA-AA-CC-----CA---C-CT---AC-CA-CCCTAT--CGA--T-CC---A--CAGCTTGCGCA
* * * * ***
17427435 -CCCTATCGATC-CACGGCTTGCGCATCTCGTCTCTCTGGCCGGCGTAGAGCCCGCCCGCCCCTT
40 TCCC-ATC--TCTC-TGGC-CG-GCA--TAGT-GC-CT-GCC--C-TCCCGCCCGCCCG---C-T
* * * * * *
17427498 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTTATTACCAATCTAAAAT-TAGACCGAACCAAGG
87 CGTTTCGTCGGTTGGCTTAGGCATA-GAAGTTCATTCCCAGTCTAAGATCGA-ACCGAACCAAGG
* * * *
17427562 GTTGTGGTAGCAGGATCGGAAGCATGC-CA-AGGGGAACCCGGCCGATCCCCGACTTGCGCATCC
150 GTTGCGGCAGCAGGATCGGAAGCA--CACAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCC
* * *
17427625 CGCCCCTCTGGCCGGCTGAACGCCCGCACGCTCATTTC---G-TG-----GG--TT--G-G--C-
213 CGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCTGGGTTGACTTAGGCATTCGGAGTTCA
* * *
17427673 -T--TAG-----GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGGCCGAGGGTTGCGGCA
278 TTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-GGACGAGGGTTGCGACA
* * * *
17427730 GCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTCCTCAC--CGGGGCACCATCGTCGG
342 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACTAC-GGGC-CCATCGCCGG
* * * * * *
17427793 AGAACTTGATCGACGGCATTAGGGTTCCGACGATC-----GG--GGGGTGTGTGCACATGATGTG
405 AGAACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGTGCGCACATGATGTG
* * * *
17427851 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTGTCCCTCATGAAACCTCAAGAACTCAC
470 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
17427916 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTTGCCATTAAAGTGTCTGAAAT
535 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
17427981 GGGGACACTGTTTTCAAATGGTCACAAAATCTTGTTCACATCGAGTTTTTAGCTGAATTTTTTTT
600 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * * *
17428046 TGCATGCCAACAAAAATAAAAGGATCATGTCTACCAAGTCTAGGTCCAAAACTTCTTCTGAAAAA
665 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * *
17428111 ATTTTAAAAAATCTCGAACCGTAAAAAGATTCGAAAATCGTGAAAAATAAAAAATGAGTCGTCGT
730 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
17428176 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
795 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCA-TG--TG-ACT
* * * *** * * *
17428221 TACAAGCCATAAAAATGGCATTGGCATGCGAAAATATGAAGATGTACCTAAACCCA-CCTAC-CA
1 TA-AA-CC----------CA----CCTACCACCCTAT--CGA--T-CC---A--CAGCTTGCGCA
* * * * *
17428284 -CCCTATCGATC-CACGGCTTGCACATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCC
40 TCCC-ATC--TCTC-TGGC-CG-GCAT--AG------T-G-C--C----TGCCCTCCCGCCCGCC
* * ** * * * *
17428347 CGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTAACAGTCTAAGATCGGATCGGATCG
83 CGCTCGTTTCGTCGGTTGGCTTAGGCATA-GAAGTTCATTCCCAGTCTAAGATC-GAACCGAACC
** * ** *** * *
17428412 AA-GGTTGCGATAGCAGGAT-TGACAGCATGCAGA-GGGGACCCTGGTTGATCCCCGGCTTACGC
146 AAGGGTTGCGGCAGCAGGATCGGA-AGCACACAGAGGGGGACCC-GACCGATCCCCGACTTGCGC
* * ** * * *
17428474 AT-CTGCCCCTCTGGCTGGCTGAGCGCCCACACGCTCGTTTCATGGTTTGACTTAGGCATACGAA
209 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTC-TGGGTTGACTTAGGCATTCGGA
* * * * * ** *
17428538 GTTCATTCCCAGTCTAAGCATACCGACTTCATTCCCAGTCTAAGATCAGATCGGATCGACTGTTA
273 GTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA-CGAGGGTTG
* * * * * *
17428603 CGGCAACACATGCTGGGCTCGGGCATGTGCTAGAGCTGCATTTTTCTTC-GT-CGGGGCACCATC
337 CGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACTAC-GGGC-CCAT-
17428666 GCCTGAGCATCGCCAGAGAACCTGACCGACGGCATTGGGG-TTCTGACGATCGGGGGGGCCGGGG
399 --C---GC--CG---GAGAACCTGACCGACGGCATTGGGGTTTC-GACGATCGGGGGGGCC-GGG
* * * * *
17428730 GGTGTGCGCACATGATGTACGATGGGTGCAGGTGCTTGGCCCTTATATTGGTCCCCTACCCCTCA
452 GG-GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* *
17428795 TCAAACCTTGAGAACTCACACCCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAG
516 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
*
17428860 CAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
581 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
*
17428925 TTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
646 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * ** *
17428990 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCAAACCGTTAAAAGTTTTGAAAATCATGAAAA
711 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAA
* * * *
17429055 ATAGAAAATGAGTCGTC-T-CCGTGGAAACTGCTC-CGTGAAGGTTTAAGGGACCATTGATGAAT
776 ATAGAAAACGAGTCGTCTTGCCAT-GAAACT--TCACGTGAAGGCTTAAGGGACCA-TG-TG-AC
17429117 T
835 T
* * * ** ***
17429118 TACAACCATAAAAATGGCATTGGGCGCACAGAAATATACGAAGATGTGCCTA-AGGCCCAC-CTA
1 TA-AACC-----CA---C-CT--AC-CAC---CCTAT-C---GA--T-CC-ACA-GCTTGCGC-A
* * * ** * * *
17429181 CCACCGTATCAATCAC-GGCTTGCGCATCCTCTCTGCTGACCGGCGTAGTGCCCAACCCGTCCGC
40 TC-CC--ATC--TCTCTGGC-CG-GCATAGT-GC--CTG-CC--C----T-CCC-GCCCGCCCGC
* * * * * * * * *
17429245 CCGTCTCGTTTCGTCGGTTGGAACTTAGGCATACGGAGTGCATTACCTGTCTAAGATCGGATCGG
86 TCGTTTCGT-----CGGTTGG--CTTAGGCATA-GAAGTTCATTCCCAGTCTAAGATCGAACCGA
* * * **** * *
17429310 ATCGAGGGTTGCAGCAGCAGGATC-GACAGCTTGTAGAGGGGGACCTGACCGATCCCCGGCTTGC
143 ACCAAGGGTTGCGGCAGCAGGATCGGA-AGCACACAGAGGGGGACCCGACCGATCCCCGACTTGC
* * * * * *
17429374 GCATCCCGCCTCTCTGGCTGGCTGAGTGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACG
207 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTC-TGGGTTGACTTAGGCATTCG
* * * *
17429439 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGATCGAGGGT
271 GAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA-CGAGGGT
** * * *
17429504 TGCGGTAGCACATACTGGGCTCGGGCATGTGCTGGTGCCTCATTTTTCTTC-GT-CGAGGCACCA
335 TGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACTACG-GGC-CCA
** ** * ** *
17429567 TCATCGGAGCATCACCGAAAAATCGGACCGACGGCATTAAGGTTCCGGTGATCGGGGGAGACGGC
398 TCGCCGGAG-A--ACC------T--GACCGACGGCATTGGGGTTTCGACGATCGGGGG-G--GCC
* * * * * * *
17429632 GGGGTGTGCGCACATGATGTGCGATGAGTGCTGGTACTTTGCCCTTATACTGGCCTCCTATGCTT
449 GGGGGGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* * * * *
17429697 CATCAAACCTCAACAACTCACA-CCCCTTAAAGACCATTTCAGATTTTACAAGTTTGCTGCCAGT
514 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* * *
17429761 AGCTATTAAAGTGTCTGAAATGGGGACACTCTTTTCAAATGGTTACAAAATCTTGTACACTTCGA
579 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* *
17429826 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGAATCACATCTACCAAGTTTGGG
644 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * * ** *
17429891 GCAAAAAATCCTTCCAAAAAAATTTTAAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGA
709 GCCAAAACTCCTTCCGAAAAAATTTT-AAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGA
* * *
17429956 AAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGATTAAGGGACCATTGTATGAA
773 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC---------A
17430021 TTTACAAGGCATGCAGAACTATGAAGATGT
829 --T-----G--T---G-AC----------T
* *
17430051 GCCTAAACCCACCTACCACCCTATCGATCCAC-GACTTGCGCATCCCGTCTCTCTGGCCGGCGTA
1 ---TAAACCCACCTACCACCCTATCGATCCACAG-CTTGCGCATCCCATCTCTCTGGCCGGCATA
* * * * * *
17430115 --G--TG--CT--CGCCCGCCTGCTCATTTCGTCGGTCGGCTTATGCATACGGAGTTCATTCATC
62 GTGCCTGCCCTCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA-GAAGTTCATTC-CC
* * * * * **
17430172 AGTCTAAGATTGGATC-AGACCGAGGGTTACGGCAGCAGGATC-GATAGCAGGCAGAGGGGGACC
125 AGTCTAAGATCGAACCGA-ACCAAGGGTTGCGGCAGCAGGATCGGA-AGCACACAGAGGGGGACC
* *
17430235 CGA-C--T-------TT-CGCATCCTGCCCCTCTGGCCGGCTGAGCGCTCGTACGCTCGTTTC--
188 CGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCTG
*
17430287 -G-TG-----GG--TT--GA---C--T--TAG-----GCATACGGAGTTCATTCCCAGTCTAAAA
253 GGTTGACTTAGGCATTCGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * * * * * *
17430329 TCGGATCAGACCGAGGGTTACAAAAACACATACTGGGCTCAGGCATGTGCTGGTGCCACATTTTT
318 TCGGACCGGA-CGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
* ** * * * **
17430394 CTTCGTCGAGGCACCATCACCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGTGGTTCCGGT
382 C-T--T-----CA-C-T-ACGGGCCCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTTCGAC
* * *
17430459 GATCGGGGTGGTCGGGGGGGGTATGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
436 GATCGGGG-GGGC-CGGGGGG--TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
17430524 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
497 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* *
17430589 ACAGGTTTGCTG-CAGTAGCCATCGAAA-TGTTTGAAATGGGGACACTTTTTTCAAATGGTCACA
562 ACAGGTTTGCTGCCAGTAGCCAT-TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
*
17430652 AAATCTTGTACACTCCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
626 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
* ** *
17430717 ACGTCCAAAAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC-CTGAACCGCAAA
691 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTC-GAACCGTAAA
* * * *
17430781 AGGTTTCAAAAATCGTGAAAAATTGAAAACGAGTCATCTTGCCATGAAACTTCAGGTGAAGGCTT
755 AAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
*
17430846 AAGGGACCATTGTATGAATT
820 AAGGGACCA-TG--TG-ACT
* ** *** * * * *
17430866 TACAAGCCA--TAAAAATTTCATTG-GCACACAGAAATATGAAGATGTGCATAAACCCACCTACC
1 TA-AACCCACCTACCACCCT-ATCGATC-CACAG----CT-----TGCGCAT---CCCA--T---
* * * * * *
17430928 ACCCTATCGATCCACGGCTTGCGCAGCCCCTATCTCTGGCCGGCGTAGTGCCCGCCTGCTCGCTC
46 -CTCTCT-G--GC-CGGCAT----AG----T-GC-CT-GCC--C----T-CCCG-C--C-CGCCC
* * * * *
17430993 GCTCGTTTTGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTGTAAGATCGGACCGAACCGA
84 GCTCGTTTCGTCGGTTGGCTTAGGCATAGA-AGTTCATTCCCAGTCTAAGATCGAACCGAACCAA
* * * * ** ** * *
17431058 GGTTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCTGGGCTTGCGCATCT
148 GGGTTGCGGCAGCAGGATCGGAAGCACACAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCC
* * * * *
17431123 CGCACCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTC
213 CGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTC-TGGGTTGACTTAGGCATTCGGAGTTC
* * * * * *
17431188 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATTGGATCAGACATAGGGTTGCTG-
277 ATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC-GAGGGTTGC-GA
* * * *
17431252 CAGCACATGCTAGGCTCCGGCATGTGCTGGTGCCACATTTTTCTTCACCGA-GGCACCATCGCCA
340 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCA-CTACGG-------GCC-
** * *
17431316 GAGCATCGCCGGAGAACCTGACCGTTGGCATTGGGGTTCCGGCGATCGGGGGGGCCCGGGGGGGT
396 ---CATCGCCGGAGAACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGG-CC--GGGGG-
*
17431381 GTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
454 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
17431446 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
519 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
*
17431511 TTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
584 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
** * * * * *
17431576 TAGCTGAATTTTTTTCCGCATGCCAAAAAAAATACAAGGAACATGTCTACCAATTTTGGGGACAA
649 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * * *
17431641 AACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTCAAAAATCATAAAAAATA
714 AACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATA
17431706 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
779 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
17431757 TGTATGAATT
Statistics
Matches: 5685, Mismatches: 768, Indels: 932
0.77 0.10 0.13
Matches are distributed among these distances:
808 1 0.00
809 2 0.00
810 88 0.02
811 8 0.00
812 8 0.00
813 6 0.00
814 2 0.00
815 4 0.00
816 1 0.00
817 3 0.00
819 2 0.00
821 13 0.00
822 35 0.01
823 341 0.06
824 8 0.00
825 3 0.00
826 4 0.00
827 1 0.00
828 8 0.00
829 5 0.00
830 4 0.00
831 5 0.00
832 1 0.00
833 3 0.00
834 8 0.00
835 2 0.00
836 563 0.10
837 2 0.00
838 10 0.00
839 51 0.01
842 7 0.00
843 201 0.04
844 216 0.04
845 41 0.01
846 1 0.00
847 301 0.05
848 68 0.01
849 126 0.02
850 119 0.02
851 170 0.03
852 55 0.01
853 85 0.01
854 21 0.00
855 12 0.00
856 39 0.01
857 16 0.00
858 1 0.00
859 6 0.00
860 5 0.00
861 2 0.00
862 2 0.00
863 55 0.01
864 46 0.01
865 2 0.00
866 2 0.00
867 83 0.01
868 4 0.00
869 40 0.01
870 2 0.00
871 6 0.00
872 146 0.03
873 4 0.00
874 40 0.01
875 1 0.00
876 3 0.00
877 3 0.00
878 93 0.02
879 23 0.00
880 55 0.01
881 10 0.00
883 3 0.00
884 4 0.00
885 6 0.00
886 21 0.00
887 9 0.00
888 14 0.00
889 32 0.01
890 11 0.00
891 9 0.00
892 138 0.02
893 11 0.00
894 9 0.00
895 21 0.00
896 83 0.01
897 142 0.02
898 636 0.11
899 29 0.01
900 264 0.05
901 238 0.04
902 80 0.01
903 387 0.07
904 141 0.02
905 15 0.00
906 13 0.00
907 5 0.00
908 7 0.00
909 8 0.00
910 2 0.00
911 4 0.00
912 6 0.00
913 4 0.00
914 3 0.00
916 2 0.00
919 2 0.00
920 5 0.00
923 6 0.00
924 1 0.00
926 1 0.00
927 1 0.00
930 1 0.00
933 1 0.00
935 4 0.00
936 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (835 bp):
TAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCATCTCTCTGGCCGGCATAGTGC
CTGCCCTCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAGAAGTTCATTCCCAGTCTA
AGATCGAACCGAACCAAGGGTTGCGGCAGCAGGATCGGAAGCACACAGAGGGGGACCCGACCGAT
CCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCTGGGTTGACT
TAGGCATTCGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG
GACGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACTAC
GGGCCCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGT
GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
CTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGA
AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATGTGACT
Found at i:17426416 original size:823 final size:827
Alignment explanation
Indices: 17424044--17433483 Score: 3280
Period size: 898 Copynumber: 10.8 Consensus size: 827
17424034 CGTCCTGCCC
* * * *
17424044 GCTCGTTTCATCGGTTGGCTTAGGCATACAG-AGTTCATTCCCAGTCTAAGATCGGACCGAACCG
1 GCTCATTTCATCGGTTGACTTAGGCATA-AGAAGTTCATTCCCAGTCTAAGATCGAACCAAACCG
* * * *
17424108 AGGGTTGCGGCAGCAGGATCGGCAGCACACAGAAGGGGGACCCGATCGATCCCCGACTTGCGCAT
65 AGGGTTACGGCAGCAAGATCGGAAGCACACA-AAGGGGGACCCGACCGATCCCCGACTTGCGCAT
* * * * *
17424173 CCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGT
129 CCCACCCCTCTGGCCGACTGAGCGCCCGCACACTCGTTTC---GGTTG----AGG-ATTC-GAGT
* * * * *
17424238 TCATTCCCTGTCTAAGCATACGGAGTTCATT-CCAGTCTAAGATCGAATCAGACTGAGGGTTACG
185 TC--T---AG----AGCATACGGAGTTCATTCCCAGTCTAAGATCG-ACCGGACCGAGGGTTGCG
* * * * * * *
17424302 ATAGCTCATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACTATCGCTG
240 ACAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCG-TC
*
17424367 GAGCATCGTC-GGAGAACCTAACCGACGGCATTGGAGTTTCGACGATCGGGGGGCCCGAGGGGGT
304 GAGCATCGTCAGG-GAACCTGACCGACGGCATTGG-GTTTCGACGATCGGGGGG--C-AGGGGG-
*
17424431 ATGTGCACA-A-GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTTACCCCCTATCCCTCAT
363 -TGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTCACCCCCTATCCCTCAT
* *
17424494 CAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGACTTTACAGGTTTGCTGCCAGTAGC
427 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* *
17424559 CATTAAAGTGT-TCGAAATAGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCA-AG
492 CATTAAAGTGTCT-GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT-AGAG
* * * *
17424622 CTTTTAGTTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTCGGGG
555 TTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* *
17424687 CTGAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAA
620 CCGAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAA
*
17424752 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATGTGCTTAAAC
685 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATGTGCTTAAAC
* ** *
17424817 CCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCATCTCTCTGGCCGGCATAGTGCCTGCC
750 CCACCTACCACCCTATCGACCCACAGCTTGCGCATCCCATCTCTCTAACCGGCATAGTGCCCGCC
* * *
17424882 CTCCCGCTTGCCC
815 CACCCGCTCGCCA
* * *
17424895 GCTCATTTCGTCGGTTGACTTAGGCATATGAAGTTCATTCCCAGTCTAAGATCGAACCGAACCGA
1 GCTCATTTCATCGGTTGACTTAGGCATAAGAAGTTCATTCCCAGTCTAAGATCGAACCAAACCGA
* * * *
17424960 GGGTTGCGGCAGCAGGATCGGAAGCACACAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCC
66 GGGTTACGGCAGCAAGATCGGAAGCACACAAAGGGGGACCCGACCGATCCCCGACTTGCGCATCC
* * * *
17425025 CACCCCTCTGGTCGGCTGAGTGCCCGTACACTCGTTTCTTGGGTTGACTTAGGCATTCGGAGTTC
131 CACCCCTCTGGCCGACTGAGCGCCCGCACACTCGTTTC---GGTTG----AGG-ATTC-GAG---
* * *
17425090 ATTCCTAGTCTAAGCGTACGGAATTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGAC
184 -TT-CTAG----AGCATACGGAGTTCATTCCCAGTCTAAGATC-GACCGGACCGAGGGTTGCGAC
*
17425155 AGCACATGCTAGGCTCGGGCATGTGCTGTTGCCGCATTTTTCTTCACTAC--GGC-CCA---TC-
242 AGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCA-T-CGGGGCACCATCGTCG
* * * * *
17425213 -GC--CG--A-AGAACCTGACCGACAGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGG-GTGC
305 AGCATCGTCAGGGAACCTGACCGACGGCATT-GGGTTTCGACGATC-GGGGGGCAGGGGGTGTGC
** *
17425271 ACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACC
368 ACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTCACCCCCTATCCCTCATCAAACC
*
17425336 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTATACAGGTTTGCTGCCAGTAGCCATTAA
433 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
** * *
17425401 AGTGTCAAAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGC
498 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTAGAGTTTTTAGC
*
17425466 TGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
563 TGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCGAAACT
* * * **
17425531 CCTTCCGAAAAAATTTTAAAAAATCTTGAACGGCAAAAGGTTTCAAAAATTGTGAAAAATAGAAA
628 CCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAA
17425596 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATGTGCTTAAACCCACCTAC
693 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATGTGCTTAAACCCACCTAC
*
17425661 CACCCTATCGACCCACAGCTTGCGCATCCCATCTCTGTAACCGGCATAGTGCCCGCCCACCCG-T
758 CACCCTATCGACCCACAGCTTGCGCATCCCATCTCTCTAACCGGCATAGTGCCCGCCCACCCGCT
17425725 CCGCCA
823 -CGCCA
** * * *
17425731 GCTTGTTTCATCGGTTGGCTTAGGCATACAG-AGTTCGTTCCCAGTCTAAGATTGAACCAAACC-
1 GCTCATTTCATCGGTTGACTTAGGCATA-AGAAGTTCATTCCCAGTCTAAGATCGAACCAAACCG
* * *
17425794 AGGGGTTACAGG-AGCAAGATCGGCAGCACGCAAAGGGGGACCCGACCGATCCCCGGCTTGCGCA
65 A-GGGTTAC-GGCAGCAAGATCGGAAGCACACAAAGGGGGACCCGACCGATCCCCGACTTGCGCA
** **
17425858 TCCCGTCCCTCTGGCCGACTGAGCGCCCGCATGCTCGTTTC-G-TG-GG-TT-GAG-T-TAG-GC
128 TCCCACCCCTCTGGCCGACTGAGCGCCCGCACACTCGTTTCGGTTGAGGATTCGAGTTCTAGAGC
* *
17425915 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGCTGC-AGCAGCAGATGCTAGGC
193 ATACGGAGTTCATTCCCAGTCTAAGATC-GACCGGACCGAGGGTTGCGA-CAGCACATGCTAGGC
* * * *
17425979 TCGGGCATTTGCTGGTGCCACAGTTTTCCTCATCGGGGCACCATCGTCAGAGCATCGTCAGGGAA
256 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTC-GAGCATCGTCAGGGAA
* * * * * *
17426044 CTTGACCGGCGGCATTAAGGTTTCGGCGTTCGGGGGGCTAGGGGGTGTGCCCACATGATGTGCGA
320 CCTGACCGACGGCATT-GGGTTTCGACGATCGGGGGGC-AGGGGGTGTGCACACATGATGTGCGA
* * *
17426109 TGGGTGCTGGTACTTGGCCCTTATACTCACCCCCTATCCCTTATCAAACCTCAAGAACTCACACC
383 TGGGTGCTGGTACTTGGCCCTTATATTCACCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * *
17426174 TCCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAG-CAGTTAAAGTGTCTGAAATGG
448 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA-TTAAAGTGTCTGAAATGG
* *
17426238 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAATTTTTTTGTC
512 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAATTGTTTTGTG
* * * * *
17426303 CTTGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCGAAACTACTTCCAAAAAAAT
577 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCGAAACTCCTTCCGAAAAAAT
* * *
17426368 TTTTAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGC
642 TTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
** * * ***
17426433 CATGAAACTTCACGTGAAGGCTTAAGGGACCAT-TG--TAAGA---ATTTACAAGCCATAAAAAT
707 CATGAAACTTCACGTGAAGGCTTAAGGGACCATGTGCTTAA-ACCCACCTACCA-CCCTATCGA-
** ** * * *** * ** * *** ** *
17426492 GGCATTGGCATGCAGAAATATGAAGATGTGC-CTAAACCCACCTACCACCCTATCGATCCACAGC
769 CCCA-CAGCTTGC-G---CAT-CCCATCT-CTCT-AACCGGCATAGTGCCC-GCCCA-CC-C-GC
*
17426556 TTGCGCA
822 TCGC-CA
* * *** ** * ** ** * *** * ** * *
17426563 TCCCGCGTC-TCTGGCCGACGTAGTGC--CCGCCCG-CCCGCCCGCTCGTTTCGTCGGTTGGCTT
1 GCTCATTTCATC-GGTTGACTTAG-GCATAAG-AAGTTCATTCC-C-AG--TC-TAAGAT--C-G
** * * * * * * * * **
17426624 AGGCATA-CG-GAGTTCATTC-CCAGTCTCAGATC-AAATCAGACCAAGGGTTGCGGCAGCAAGA
55 AACCAAACCGAGGGTT-A--CGGCAG-C-AAGATCGGAAGCACA-CAAAGG--G-GG-A-CCCGA
* * * * * * * * * * * *
17426685 TCGATAGCACACAGA--GGGGGA-CCCA--GCTGAT-CCCCAGCTTGTGCATCCCGC-CCCTC-T
109 CCGAT--C-C-CCGACTTGCGCATCCCACCCCT-CTGGCCGA-C-TGAGC-GCCCGCACACTCGT
* * ** * * * ** ** * * ** * * *
17426742 GGTCGGCTGAGTGCCCGCTCGCTTGTT-TTGTGGTTGACTTAG-GCATACGGAGT-TCA-TTCCC
166 -TTCGGTTGAG-G---ATTCG--AGTTCTAGAGCAT-ACGGAGTTCATTCCCAGTCTAAGAT-CG
* ** ** *
17426803 AGTCTAAGCATATGGAGTT-C-ATTCCCAGTCTAAGATCGGATAGGACTGAGGGTTACGGCAGCA
222 A-CCGGA-CCGA-GG-GTTGCGA----CAG-C--ACAT--G------C-------T---------
* * * *
17426866 CATGCTGGGCTCGGGCACGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCTGGAGCAT
252 -A-----GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCG-TCGAGCAT
* ** * *
17426931 CG-CCGGAGAACCTGACCGACGGCATTGTGGTTTCGGTGATCGGGGGGGCCGGGGGGTGTGCGCA
310 CGTCAGG-GAACCTGACCGACGGCATTG-GGTTTCGACGATC-GGGGGG-CAGGGGGTGTGCACA
* ** *
17426995 CATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCG
371 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTCACCCCCTATCCCTCATCAAACCTCG
*
17427060 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGT
436 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
*
17427125 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
501 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGA
* * *
17427190 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCT
566 ATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCGAAACTCCT
* * ** * *
17427255 TCCGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAA-A-AAAAGG
631 TCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
* * *
17427318 AGTCGTCTTGCCATGAAACTTCACGTGAAGTCTTAAGGGACCATTGTATGAATTTACAAGCCA--
696 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA-TG--TG--CTTA-AACCCACC
** ** * ** * ** * ** * ** * *** *
17427381 TAAAAATGGC-ATTGGCACGTAGAAATATGAAG-AT-GTA-C-CT-AAACCCACCTACCACCCTA
755 T-ACCA-CCCTA-TCG-ACCCACAGCT-TG-CGCATCCCATCTCTCTAACCGGCATAGTGCCC-G
* * *
17427440 TCGATCCACGGCTTGCGCA
813 CCCA-CC-C-GCTCGC-CA
* * * ** * * **** *** * * * *
17427459 TCTCGTCTC-TCTGGCCGGCGTAGAGCCCGCCCGCCCCTTCGTTTCGTCGGTTGGCTTAGGCATA
1 GCTCATTTCATC-GGTTGACTTAG-G--CATAAG-AAGTTC-ATTC-CCAG-T--C-TAAG-AT-
* * *** * * * * * * * * ***
17427523 CGGAGTTTATTACC-AATCTAAAATTAGACCGAACCAAGGGTTGTGGTAGCAGGATCGGAAGCAT
53 C---G---A--ACCAAACCGAGGGTT--ACGGCAGCAA--GAT-CGGAAGCA-CA-C-AAAGGGG
* ** * ** * * *
17427587 G--CCAAGGGGAACCCGGCCGA-TCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAACGCC
102 GACCCGA-CCG-ATCC--CCGACT-TGCG-C------ATCCCACCCCTCTGGCCGACTGAGCGCC
* * *
17427649 CGCACGCTCATTTC-G-TG-GG-TT-G-GCT-TAG-GCATACGGAGTTCATTCCCAGTCTAAGAT
155 CGCACACTCGTTTCGGTTGAGGATTCGAGTTCTAGAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * *
17427706 CAGACCAGG-CCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTT
220 C-GACC-GGACCGAGGGTTGCGACAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTT
* * * * *
17427770 CCTCACCGGGGCACCATCGTC--G----G--A--GAACTTGATCGACGGCATTAGGGTTCCGACG
283 CTTCATCGGGGCACCATCGTCGAGCATCGTCAGGGAACCTGACCGACGGCATT-GGGTTTCGACG
* * **
17427825 ATC---GGG--GGGTGTGTG--CACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGG
347 ATCGGGGGGCAGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTCA
* * *
17427883 CCCCCTGTCCCTCATGAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
412 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* *
17427948 TTTGCTGCCAGTTGCCATTAAAGTGTCTGAAATGGGGACACTGTTTTCAAATGGTCACAAAATCT
477 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* * * * * * *
17428013 TGTTCACATCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATAAAAGGATCATGTCT
542 TGTACACTTAGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * * * * * * *
17428078 ACCAAGTCTAGGTCCAAAACTTCTTCTGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGATTC
607 ACCAAGTTTGGGGCCGAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTC
* * * * *
17428143 GAAAATCGTGAAAAATAAAAAATGAGTCGTCGTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
672 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* * ** ** *** * * *
17428208 CATTGTATGAATTTACAAGCCA--TAAAAATGGCATTGGCATGCGAAAATATGAAGATGTAC-CT
737 CA-TG--TG--CTTA-AACCCACCT-ACCA---CCCT---AT-CG-ACCCA--CAGCT-TGCGC-
* * * ** ** * *
17428270 AAACCCA-C-CTACCACCCTATCGATCCACG-GCTTGCACATCCCGTCTCTCTGGCCG
783 -ATCCCATCTCT-CTAACC-GGC-AT--A-GTGCCCGCCCA-CCCG---CTC--GCCA
* * * *** * **** * *** * ** * *
17428325 GCGT-AGTGC-CCGCCCGCCCGCCCGC-T-CGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCAT
1 GC-TCATTTCATCGGTTG-ACTTAGGCATAAGAAGT-TC-ATT--CCCAGTC-TA---AGATC--
* * * ** * * ** *
17428386 TAACAGTCTAAGATCGGATCGGATCGAAGGTTGCGATAGCAGGAT-TGACAGCATGCAGA-GGGG
54 GAAC---C-AA-A-CC-----GA--G--GGTTACGGCAGCAAGATCGGA-AGCACACAAAGGGGG
*** * * ** * * * *
17428449 ACCCTGGTTGATCCCCGGCTTACGCAT-CTGCCCCTCTGGCTGGCTGAGCGCCCACACGCTCGTT
103 ACCC-GACCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCACACTCGTT
* * *
17428513 TCATGGTTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACCGACTTCATTCCCAGTC
167 TC--GG-TTG----AGG-ATTCG-AGTTC--T---AG----AGCATACGGAGTTCATTCCCAGTC
* * ** * * * * * * *
17428578 TAAGATCAGATCGGATCGACTGTTACGGCAACACATGCTGGGCTCGGGCATGTGCTAGAGCTGCA
214 TAAGATC-GACCGGACCGAGGGTTGCGACAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCA
* * * * *
17428643 TTTTTCTTCGTCGGGGCACCATCGCCTGAGCATCGCCAGAGAACCTGACCGACGGCATTGGGGTT
278 TTTTTCTTCATCGGGGCACCATCGTC-GAGCATCGTCAGGGAACCTGACCGACGGCATTGGGTTT
* * * * *
17428708 CTGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTACGATGGGTGCAGGTGCTTGGCCCT
342 C-GACGATC-GGGGGG-CAGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
*** * * *
17428773 TATATTGGTCCCCTACCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAACATTTGAGAT
404 TATATTCACCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
*
17428838 TTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
469 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
*
17428903 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGA
534 CAAAATCTTGTACACTTAGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGA
* * **
17428968 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCAAACCGTTA
599 TCACGTCTACCAAGTTTGGGGCCGAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAA
** * *
17429033 AAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCGTC-T-CCGTGGAAACTGCTC-CGTGAAG
664 AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT-GAAACT--TCACGTGAAG
* * ** ** * * * * *
17429095 GTTTAAGGGACCATTGATGAATTTACAA-CCA--TAAAAATGGC-ATTGGGCGCACAGAAATATA
726 GCTTAAGGGACCA-TG-TG--CTTA-AACCCACCT-ACCA-CCCTA-TCGACCCACAG--CT-TG
* * * * * * ** * *
17429156 CGAAGATGTGCCTAAGGCCCACCTACCACCGTATCAATCACG-GCTTGCGCATCCTCTCTGCTGA
780 CG--CA--T-CC-CA-TCTC-TCTA--ACCG--GC-AT-A-GTGCCCGCCCA-CC-CGCT-C-G-
*
17429220 CCG
825 CCA
** * * * * ** * * **
17429223 GCGT-AGTGCCCAACCCGTCCGCCCGTCTCG-TTTCGTCGGTTGGAACTTAGGCATACGGAGTGC
1 GC-TCA-T-TTC-A----T-CG---GT-T-GACTTAGGC-ATAAGAAGTT---CATTCCCAGT-C
** * * * * * * **** *
17429286 -ATTACCTG-TCTAAGATCGGATCGGATCGAGGGTTGCAGCAGCAGGATC-GACAGCTTGTAGAG
47 TAAGATC-GAACCAA-A------C----CGAGGGTTACGGCAGCAAGATCGGA-AGCACACAAAG
* * * * * * * *
17429348 GGGGACCTGACCGATCCCCGGCTTGCGCATCCCGCCTCTCTGGCTGGCTGAGTGCCCGCACGCTC
99 GGGGACCCGACCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCACACTC
* *
17429413 ATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
164 GTTTC---GGTTG----AGG-ATTC-GAGTTC--T---AG----AGCATACGGAGTTCATTCCCA
* * * ** * *
17429478 ATCTAAGATCAGACCAGATCGAGGGTTGCGGTAGCACATACTGGGCTCGGGCATGTGCTGGTGCC
211 GTCTAAGATC-GACCGGACCGAGGGTTGCGACAGCACATGCTAGGCTCGGGCATGTGCTGGTGCC
* * * * * * ** * * *
17429543 TCATTTTTCTTCGTCGAGGCACCATCATCGGAGCATC-ACCGAAAAATCGGACCGACGGCATTAA
275 GCATTTTTCTTCATCGGGGCACCATCGTC-GAGCATCGTCAG-GGAACCTGACCGACGGCATT-G
* ** * * * *
17429607 GGTTCCGGTGATCGGGGGAGACGGCGGGGTGTGCGCACATGATGTGCGATGAGTGCTGGTACTTT
337 GGTTTCGACGATCGGGGG-G-CAG-GGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTG
* ** * * * * * *
17429672 GCCCTTATACTGGCCTCCTATGCTTCATCAAACCTCAACAACTCACA-CCCCTTAAAGACCATTT
399 GCCCTTATATTCACCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* * * *
17429736 CAGATTTTACAAGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGACACTCTTTTCAAAT
464 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * *
17429801 GGTTACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
529 GGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATAC
* * ** * * *
17429866 AAGAATCACATCTACCAAGTTTGGGGCAAAAAATCCTTCCAAAAAAATTTTAAAAAAATCCCGAA
594 AAGGATCACGTCTACCAAGTTTGGGGCCGAAACTCCTTCCGAAAAAATTTT-AAAAAATCTCGAA
* * *
17429931 CCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACGTG
658 CCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
*
17429996 AAGGATTAAGGGACCATTGTATGAATTTACAAGGCATGCAGAACTATGAAGATGTGCCTAAACCC
723 AAGGCTTAAGGGACC---------A--T-----G--T---G--C----------T---TAAACCC
* * ** * *
17430061 ACCTACCACCCTATCGATCCAC-GACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCG---
752 ACCTACCACCCTATCGACCCACAG-CTTGCGCATCCCATCTCTCTAACCGGCATAGTGCCCGCCC
*
17430122 ---C-C-CGCCT
816 ACCCGCTCGCCA
* * * * * * * * * * *
17430129 GCTCATTTCGTCGGTCGGCTTATGCATACGGAGTTCATTCATCAGTCTAAGATTGGATCAGACCG
1 GCTCATTTCATCGGTTGACTTAGGCATAAGAAGTTCATTC-CCAGTCTAAGATCGAACCAAACCG
* ** *
17430194 AGGGTTACGGCAGCAGGATC-GATAGCAGGCAGAGGGGGACCCGA-C--T-------TT-CGCAT
65 AGGGTTACGGCAGCAAGATCGGA-AGCACACAAAGGGGGACCCGACCGATCCCCGACTTGCGCAT
** * * * * *
17430247 CCTGCCCCTCTGGCCGGCTGAGCGCTCGTACGCTCGTTTC-G-TG-GG-TT-GA-CT-TAG-GCA
129 CCCACCCCTCTGGCCGACTGAGCGCCCGCACACTCGTTTCGGTTGAGGATTCGAGTTCTAGAGCA
* * * * * * * * *
17430304 TACGGAGTTCATTCCCAGTCTAAAATCGGATCAGACCGAGGGTTACAAAAACACATACTGGGCTC
194 TACGGAGTTCATTCCCAGTCTAAGATC-GACCGGACCGAGGGTTGCGACAGCACATGCTAGGCTC
* * * * ** *
17430369 AGGCATGTGCTGGTGCCACATTTTTCTTCGTCGAGGCACCATCACCGGAGCATCG-CCGGAGAAC
258 GGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTC-GAGCATCGTCAGG-GAAC
* * ** * * **
17430433 CTGACCGGCGGCATTGTGGTTCCGGTGATCGGGGTGGTCGGGGGGGGTATGTGCACATGATGTGC
321 CTGACCGACGGCATTG-GGTTTCGACGATCGGGG-GG-C--AGGGGGTGTGCACACATGATGTGC
**
17430498 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
381 GATGGGTGCTGGTACTTGGCCCTTATATTCACCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
17430563 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CAGTAGCCATCGAAA-TGTTTGAAAT
446 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT-TAAAGTGTCTGAAAT
** *
17430626 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTCCGAGTTTTTAGCTGAATTTTTTTG
510 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAATTGTTTTG
* ** *
17430691 TGCATGCCAACAAAAATACAAGGATCACGTCCAAAAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
575 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCGAAACTCCTTCCGAAAAA
* * * *
17430756 ATTTTAAAAAATC-CTGAACCGCAAAAGGTTTCAAAAATCGTGAAAAATTGAAAACGAGTCATCT
640 ATTTTAAAAAATCTC-GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * * ** ***
17430820 TGCCATGAAACTTCAGGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA--TAAAAATT
704 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA-TG--TG--CTTA-AACCCACCTACCACCC
* * * * * * *
17430883 TCATTGGCACACAGAAATATGAAGATGTGCATAAACCCACCTACCACCCTATCGATCCACGGC-T
763 T-ATCGACCCACAG----CT-----TGCGCAT---CCCA--T--CTCTCTA---A--C-CGGCAT
* *
17430947 --TGCGCAGCCCCTATCTCTGGCCGGCGTAGTGCCCGCCT
805 AGTGC-CCG-CCC-A---C---CC-GC----T---CGCCA
** * * * * * * * * ** * * *
17430985 GCTC-GCTCGCTCGTTTTGTCGGTT-GGCTTAGGCA-TACAGAGTT--CATTCCCAGTGTAAGAT
1 GCTCATTTC-ATCG-GTTGAC--TTAGGCATAAGAAGTTC--A-TTCCCAGTCTAAG-AT-CGAA
** * * * * * * * ** **
17431045 CGGACCGAACCGAGGTTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCTG
57 CCA----AACCGAGGGTTACGGCAGCAAGATCGGAAGCACACAAAGGGGGACCCGACCGATCCCC
* * * * ** *
17431110 GGCTTGCGCATCTCGCACCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
118 GACTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCACACTCGTTTC---GGTTG----AG
* * * * *
17431175 GCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATTGGATCAGAC
176 G-ATTCG-AGTTC--T---AG----AGCATACGGAGTTCATTCCCAGTCTAAGA-TCGACCGGAC
** * * * *
17431240 ATAGGGTTGCTG-CAGCACATGCTAGGCTCCGGCATGTGCTGGTGCCACATTTTTCTTCACCGAG
229 CGAGGGTTGC-GACAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGG
* * ** * *
17431304 GCACCATCGCCAGAGCATCG-CCGGAGAACCTGACCGTTGGCATTGGGGTTCCGGCGATCGGGGG
293 GCACCATCGTC-GAGCATCGTCAGG-GAACCTGACCGACGGCATT-GGGTTTCGACGATC-GGGG
* **
17431368 GGCCCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
354 GG--C-AGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTCACCCC
17431433 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
416 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
*
17431498 CTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
481 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * ** * * *
17431563 CACTTCGAGTTTTTAGCTGAATTTTTTTCCGCATGCCAAAAAAAATACAAGGAACATGTCTACCA
546 CACTTAGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* * * *
17431628 ATTTTGGGGACAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTCAAAA
611 AGTTTGGGGCCGAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAA
*
17431693 ATCATAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
676 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA-T
* * ** ** *** * * *
17431758 GTATGAATTTACAAGCCA--TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGC-CTAAAC
740 G--TG--CTTA-AACCCACCT-ACCA---CCCT---AT-C-GACCCA--CAGCT-TGCGC--ATC
* * *
17431820 CCACCTACCACCCTATCGATCCACGGC-TTGTGCGTCCCATCTCTTTGGCCAGCGTAGTGCCCGC
786 CCA--T--CTCTCTA---A--C-CGGCATAGT--G---C--C-C----GCC--C--A-------C
*
17431884 CCGCACGATCGCCCGCCC
818 CCG--C--T----CGCCA
* * * * * * *
17431902 GCTCGTTTCGTCGGTTGGCTTAGGCATACAG-AGTTCATTCCCATTCTAAGAT-TAGACCGAGCC
1 GCTCATTTCATCGGTTGACTTAGGCATA-AGAAGTTCATTCCCAGTCTAAGATCGA-ACCAAACC
** * * ** * * * *
17431965 GAGGGTTGGGGCAGCAGGATCGGTAGCACGTAGAGGGGGACCCG-TCGAGCCACGACTTGCGCAT
64 GAGGGTTACGGCAGCAAGATCGGAAGCACACAAAGGGGGACCCGACCGATCCCCGACTTGCGCAT
* * * * * *
17432029 CCCACCCTTATGGCCGGCTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGT
129 CCCACCCCTCTGGCCGACTGAGCGCCCGCACACTCGTTTC---GGTTG----AGG-ATTC-GAGT
* * * *
17432094 TCATTCCCAATCTAACCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTGGCG
185 TC--T----A---GAGCATACGGAGTTCATTCCCAGTCTAAGATC-GACCGGACCGAGGGTTGCG
* * * * * * *
17432159 GCAGCACATGCTGGGCTCGGGCAAGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACTG
240 ACAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATC-GTC
* * * *
17432224 GAGCATCGTC-GGAGAACCTGATCGACGACATTTGGG-TTCTGACGATCGGGGGGGCCGGGGGGC
304 GAGCATCGTCAGG-GAACCTGACCGACGGCA-TTGGGTTTC-GACGATC-GGGGGG-CAGGGGGT
* **
17432287 GTGCGA-ACAGGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT-GGCCCCTATCCCTCATC
364 GTGC-ACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTCACCCCCTATCCCTCATC
*
17432350 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGCTTTGCTGCCAGTAGCC
428 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * * *
17432415 ATTAAAGTGTCTGAAATGGGGACACTATTTTCAAATGGTCACAAAATCCTATACACTTCGAGTTT
493 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTAGAGTTT
* * * *
17432480 TTAGCTGAATTGTTTTGTACATGGCAACAAAAATACAAGGATCACG-CTTACCAAGTTTCGGCCC
558 TTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC-TACCAAGTTTGGGGCC
* * ** *
17432544 GAAACTCCTTCCGAAAAAATTTTGAAAAATCTTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAA
622 GAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAA
* * *
17432609 TAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAACGGG-CCATTGTATGAATTT
687 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA-GGGACCA-TG--TG--CTT
* ** * * *
17432673 ACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
746 A-AA-CC----------CA----C----------CT-ACCA---CCCT--A---T----CGA-CC
* ** * * * * *
17432738 TATCGATCCACGGCTTGTGCATCCCATCTCTCTGGCCCGCGTGGTGCCCGCCCGCCCGCCCGTCC
771 ---C-A--CA--GCTTGCGCATCCCATCTCTCTAACCGGCATAGTGCCCGCCCACCCGCTCG-CC
17432803 -
827 A
* * * * * * * *
17432803 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACC-GACCGA
1 GCTCATTTCATCGGTTGACTTAGGCATAAGAAGTTCATTCCCAGTCTAAGATCGAACCAAACCGA
** * * * *** **
17432867 GGGTTGGGGCAGCATGATCGGCAGCATGCAGAAA--GGGACCCGGTTGATCCATGACTTGCGCAT
66 GGGTTACGGCAGCAAGATCGGAAGCA--CACAAAGGGGGACCCGACCGATCCCCGACTTGCGCAT
* * * * *
17432930 CCCACCCTTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTCAGGCATATGGAGT
129 CCCACCCCTCTGGCCGACTGAGCGCCCGCACACTCGTTTC---GGTTG----AGG-AT-TCGAGT
* * *
17432995 TCATTTCCAATCTAACCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCG
185 TC---T---A---GAGCATACGGAGTTCATTCCCAGTCTAAGATC-GACCGGACCGAGGGTTGCG
* * * * ** * **
17433060 GCAGCACATGCTGGGCTCGGGCAAGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACAATCACCG
240 ACAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCG
* * * * * * **
17433125 AAGCGTCG-C-GGAGAACTTGACTGGCAGCATTAGGG-TTCTGACAATCGGGGGTCCCGGGGGGG
305 -AGCATCGTCAGG-GAACCTGACCGACGGCATT-GGGTTTC-GACGATCGGGGG----GCAGGGG
* * * * **
17433187 GTGTGCGCACATAATGTGTGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
362 GTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTCACCCCCTATCCCTCAT
*
17433252 CAAACCTCGAGAACTCACACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTTGCTGCCAGTAG
427 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG-TTTGCTGCCAGTAG
* *
17433317 CCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAACT-GTCACAAAATCTTGTACACTTTGAG
491 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA-TGGTCACAAAATCTTGTACACTTAGAG
* *
17433381 TTTTTAGCTGAATT-TTTTGGTGCATGCCAACAAAAATACAAGGATCATGTCTACAAAGTTTGGG
555 TTTTTAGCTGAATTGTTTT-GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * * * *
17433445 GACAAAACGCCATCCAAAAAAATTTTAAAAAATCCCGAA
619 GCCGAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAA
17433484 TTGCAGAGGG
Statistics
Matches: 6785, Mismatches: 1134, Indels: 1287
0.74 0.12 0.14
Matches are distributed among these distances:
808 1 0.00
809 2 0.00
810 88 0.01
811 7 0.00
812 8 0.00
813 6 0.00
814 2 0.00
815 4 0.00
816 1 0.00
817 3 0.00
818 5 0.00
819 7 0.00
820 5 0.00
821 20 0.00
822 38 0.01
823 342 0.05
824 5 0.00
825 5 0.00
826 7 0.00
827 11 0.00
828 9 0.00
829 2 0.00
830 2 0.00
831 13 0.00
832 18 0.00
833 7 0.00
834 12 0.00
835 5 0.00
836 558 0.08
837 12 0.00
838 3 0.00
839 33 0.00
840 13 0.00
841 10 0.00
842 3 0.00
843 231 0.03
844 224 0.03
845 45 0.01
846 12 0.00
847 307 0.05
848 14 0.00
849 83 0.01
850 116 0.02
851 160 0.02
852 39 0.01
853 4 0.00
854 6 0.00
855 12 0.00
856 41 0.01
857 20 0.00
858 11 0.00
859 23 0.00
860 22 0.00
861 21 0.00
862 13 0.00
863 48 0.01
864 14 0.00
865 16 0.00
866 11 0.00
867 51 0.01
868 4 0.00
869 39 0.01
870 5 0.00
873 4 0.00
874 39 0.01
875 1 0.00
877 3 0.00
878 95 0.01
879 3 0.00
880 39 0.01
881 1 0.00
882 2 0.00
884 3 0.00
885 1 0.00
886 1 0.00
887 4 0.00
888 6 0.00
889 32 0.00
890 10 0.00
891 7 0.00
892 2 0.00
893 11 0.00
894 4 0.00
895 5 0.00
896 127 0.02
897 111 0.02
898 642 0.09
899 31 0.00
900 354 0.05
901 535 0.08
902 124 0.02
903 470 0.07
904 319 0.05
905 337 0.05
906 75 0.01
907 27 0.00
908 218 0.03
909 64 0.01
910 9 0.00
911 6 0.00
912 10 0.00
913 14 0.00
914 11 0.00
915 17 0.00
916 20 0.00
917 28 0.00
918 8 0.00
919 10 0.00
920 8 0.00
921 1 0.00
923 6 0.00
924 1 0.00
925 3 0.00
926 2 0.00
927 1 0.00
928 2 0.00
929 1 0.00
930 1 0.00
931 5 0.00
932 11 0.00
933 4 0.00
934 2 0.00
935 3 0.00
936 12 0.00
937 8 0.00
938 1 0.00
939 1 0.00
941 8 0.00
942 2 0.00
943 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (827 bp):
GCTCATTTCATCGGTTGACTTAGGCATAAGAAGTTCATTCCCAGTCTAAGATCGAACCAAACCGA
GGGTTACGGCAGCAAGATCGGAAGCACACAAAGGGGGACCCGACCGATCCCCGACTTGCGCATCC
CACCCCTCTGGCCGACTGAGCGCCCGCACACTCGTTTCGGTTGAGGATTCGAGTTCTAGAGCATA
CGGAGTTCATTCCCAGTCTAAGATCGACCGGACCGAGGGTTGCGACAGCACATGCTAGGCTCGGG
CATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGAGCATCGTCAGGGAACCTGAC
CGACGGCATTGGGTTTCGACGATCGGGGGGCAGGGGGTGTGCACACATGATGTGCGATGGGTGCT
GGTACTTGGCCCTTATATTCACCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAAC
AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCGAAACTCCTTCCGAAAAAATTTTAAAAAA
TCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
TCACGTGAAGGCTTAAGGGACCATGTGCTTAAACCCACCTACCACCCTATCGACCCACAGCTTGC
GCATCCCATCTCTCTAACCGGCATAGTGCCCGCCCACCCGCTCGCCA
Found at i:17426820 original size:26 final size:26
Alignment explanation
Indices: 17426784--17426836 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17426774 GTTGACTTAG
17426784 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17426810 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17426836 G
1 G
17426837 ATCGGATAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17429462 original size:26 final size:26
Alignment explanation
Indices: 17429432--17429484 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17429422 GTTGACTTAG
*
17429432 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
17429458 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
17429484 G
1 G
17429485 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:17429755 original size:903 final size:898
Alignment explanation
Indices: 17427677--17433483 Score: 7227
Period size: 901 Copynumber: 6.5 Consensus size: 898
17427667 GTTGGCTTAG
*
17427677 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGGCCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * **
17427742 CTCGAGCATGTGCTGGTGCCGT-ATTTTTCCTCACCGGGGCACCAT---C---G--TCG--G-AG
66 CTCGGGCATGTGCTGGTGCC-TCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGAAG
* * *
17427795 AACTTGATCGACGGCATTAGGGTTCCGACGAT---------CGGGGGGTGTGTGCACATGATGTG
130 AACCTGACCGACGGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * * *
17427851 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTGTCCCTCATGAAACCTCAAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
17427916 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTTGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
17427981 GGGGACACTGTTTTCAAATGGTCACAAAATCTTGTTCACATCGAGTTTTTAGCTGAATTTTTTTT
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * * *
17428046 TGCATGCCAACAAAAATAAAAGGATCATGTCTACCAAGTCTAGGTCCAAAACTTCTTCTGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * * * * *
17428111 ATTTTAAAAAATCTCGAACCGTAAAAAGATTCGAAAATCGTGAAAAATAAAAAATGAGTCGTCGT
455 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTT
17428176 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
17428241 TTGGCATGC-GAAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
585 TTGGCATGCAG-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
17428305 ACATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTA
649 GCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * ** *
17428370 GGCATACGGAGTTCATTAACAGTCTAAGATCGGATCGGATCGAAGGTTGCGATAGCAGGATTGAC
714 GGCATACGGAGTTCATTACCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * *
17428435 AGCATGCAGA-GGGGACCCTGGTTGATCCCCGGCTTACGCAT-CTGCCCCTCTGGCTGGCTGAGC
779 AGCATGCAGAGGGGGACCC-GGTCGATCCACGGCTTGCGCATCCCG-CCCTCTGGCCGGCTGAGC
* * *
17428498 GCCCACACGCTCGTTTCATGGTTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
842 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * ** * *
17428555 GCATACCGACTTCATTCCCAGTCTAAGATCAGATCGGATCGACTGTTACGGCAACACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
17428620 CTCGGGCATGTGCTAGAG-CTGCATTTTTCTTCGTCGGGGCACCATCGCCTGAGCATCGCC-AGA
66 CTCGGGCATGTGCTGGTGCCT-CATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGA-A
* *
17428683 GAACCTGACCGACGGCATTGGGGTTCTGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
129 GAACCTGACCGACGGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
* * * * * *
17428748 ACGATGGGTGCAGGTGCTTGGCCCTTATATTGGTCCCCTACCCCTCATCAAACCTTGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
17428813 CACCCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
17428878 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
17428943 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* ** ** * *
17429008 AATTTTAAAAAATCTCAAACCGTTAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCGTC-
454 AATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCT
* *
17429072 T-CCGTGGAAACTGCTC-CGTGAAGGTTTAAGGGACCATTG-ATGAATTTACAA-CCATAAAAAT
519 TGCCAT-GAAACT--TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*** * * *
17429133 GGCATTGGGCGCACAGAAATATACGAAGATGTGCCTAAGGCCCACCTACCACCGTATCAAT-CAC
581 GGCATT-GGCATGCAGAAATAT--GAAGATGTGCCTAA-ACCCACCTACCACCCTATCGATCCAC
* * *
17429197 GGCTTGCGCAT-CC-TCTCTGCTGACCGGCGTAGTGCCCAACCCGTCCGCCCGTCTCGTTTCGTC
642 GGCTTGCGCATCCCATCTCT-CTGGCCGGCGTAGTGCCC-GCCCGCCCGCCCG-CTCGTTTCGTC
* * * *
17429260 GGTTGGAACTTAGGCATACGGAGTGCATTACCTGTCTAAGATCGGATCGGATCGAGGGTTGCAGC
704 GGTTGG--CTTAGGCATACGGAGTTCATTACCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGC
* * * ** *
17429325 AGCAGGATCGACAGCTTGTAGAGGGGGACCTGACCGATCCCCGGCTTGCGCATCCCGCCTCTCTG
767 AGCAGGATCGACAGCATGCAGAGGGGGACCCGGTCGATCCACGGCTTGCGCATCCCGCC-CTCTG
* * *
17429390 GCTGGCTGAGTGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
831 GCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
17429455 TAA
896 TAA
* * * *
17429458 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGATCGAGGGTTGCGGTAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
17429523 CTCGGGCATGTGCTGGTGCCTCATTTTTCTTCGTCGAGGCACCATCATCGGAGCATCACCGAAAA
66 CTCGGGCATGTGCTGGTGCCTCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGAAGA
* * * ** * *
17429588 ATCGGACCGACGGCATTAAGGTTCCGGTGATCGGGGGAGACGGCGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTAGGGTTCCGACGATCGGGGGGGCCGG-GGGGTGTGCGCACATGATGTG
* * * * * * * *
17429653 CGATGAGTGCTGGTACTTTGCCCTTATACTGGCCTCCTATGCTTCATCAAACCTCAACAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
17429718 A-CCCCTTAAAGACCATTTCAGATTTTACAAGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
17429782 GGGGACACTCTTTTCAAATGGTTACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
17429847 TGCATGCCAACAAAAATACAAGAATCACATCTACCAAGTTTGGGGCAAAAAATCCTTCCAAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
17429912 ATTTTAAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCATCT
455 ATTTT-AAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCT
*
17429977 TGCCATGAAACTTCACGTGAAGGATTAAGGGACCATTGTATGAATTT---A--C------A----
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
17430027 A--GGCATGCAGAACTATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGC
584 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
17430090 GCATCCCGTCTCTCTGGCCGGCGTAGT----GCTCGCCCGCCTGCTCATTTCGTCGGTCGGCTTA
649 GCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * *
17430151 TGCATACGGAGTTCATTCATCAGTCTAAGATTGGATCAGACCGAGGGTTACGGCAGCAGGATCGA
714 GGCATACGGAGTTCATT-ACCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGGATCGA
* * * *
17430216 TAGCAGGCAGAGGGGGA-CC---CG----A---CTTTCGCATCCTGCCCCTCTGGCCGGCTGAGC
778 CAGCATGCAGAGGGGGACCCGGTCGATCCACGGCTTGCGCATCCCG-CCCTCTGGCCGGCTGAGC
* * *
17430270 GCTCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT--
842 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *** * *
17430325 --A-A---A----A-T--C-G-----GAT-----CAGACCGAGGGTTACAAAAACACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
17430366 CTCAGGCATGTGCTGGTGCCACATTTTTCTTCGTCGAGGCACCATCACCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCTCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGAAGA
* ** * * * *
17430431 ACCTGACCGGCGGCATT-GTGGTTCCGGTGATCGGGGTGGTCGGGGGGGGTATGTGCACATGATG
131 ACCTGACCGACGGCATTAG-GGTTCCGACGATCGGGG-GGGC-CGGGGGGTGTGCGCACATGATG
17430495 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
17430560 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CAGTAGCCATCGAAA-TGTTTGA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT-TAAAGTGTCTGA
*
17430623 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTCCGAGTTTTTAGCTGAATTTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* **
17430688 TTGTGCATGCCAACAAAAATACAAGGATCACGTCCAAAAAGTTTGGGGCCAAAACTCCTTCCGAA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * *
17430753 AAAATTTTAAAAAATC-CTGAACCGCAAAAGGTTTCAAAAATCGTGAAAAATTGAAAACGAGTCA
452 AAAATTTTAAAAAATCTC-GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCA
*
17430817 TCTTGCCATGAAACTTCAGGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
516 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
** ** *
17430882 TTCATTGGCACACAGAAATATGAAGATGTGCATAAACCCACCTACCACCCTATCGATCCACGGCT
581 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * * *
17430947 TGCGCAGCCCCTATCTCTGGCCGGCGTAGTGCCCGCCTGCTCGCTCGCTCGTTTTGTCGGTTGGC
646 TGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * * * * *
17431012 TTAGGCATACAGAGTTCATTCCCAGTGTAAGATCGGACCGAACCGAGGTTTGCAGCAGCAGGATC
711 TTAGGCATACGGAGTTCATTACCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGGATC
* * ** * *
17431077 GGCAGCACGCAGAGGGGGACCCGGTCGATCCTGGGCTTGCGCATCTCGCACCTCTGGCCGGTTGA
776 GACAGCATGCAGAGGGGGACCCGGTCGATCCACGGCTTGCGCATCCCGC-CCTCTGGCCGGCTGA
* *
17431142 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
840 GCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * ** * *
17431201 GCATACGGAGTTCATTCCCAGTGTAAGATTGGATCAGACATAGGGTTGCTGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * * * *
17431266 CTCCGGCATGTGCTGGTGCCACATTTTTCTTCACCGAGGCACCATCGCCAGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCTCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGAAGA
** * * *
17431331 ACCTGACCGTTGGCATTGGGGTTCCGGCGATCGGGGGGGCCCGGGGGGGTGTGCACACATGATGT
131 ACCTGACCGACGGCATTAGGGTTCCGACGATCGGGGGGG-CC-GGGGGGTGTGCGCACATGATGT
17431396 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
17431461 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
17431526 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
** * * * * *
17431591 CCGCATGCCAAAAAAAATACAAGGAACATGTCTACCAATTTTGGGGACAAAACTCCTTCCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * *
17431656 AATTTTAAAAAATCTTGAACCGCAAAAAGTTTCAAAAATCATAAAAAATAGAAAACGAGTCGTCT
454 AATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCT
17431721 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
17431786 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGT
584 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
17431851 GCGTCCCATCTCTTTGGCCAGCGTAGTGCCCGCCCGCACGATCGCCCGCCCGCTCGTTTCGTCGG
649 GCATCCCATCTCTCTGGCCGGCGTAGT----GCCCGC-C---CGCCCGCCCGCTCGTTTCGTCGG
* * * ** * *
17431916 TTGGCTTAGGCATACAGAGTTCATTCCCATTCTAAGATTAGA-CCGAGCCGAGGGTTGGGGCAGC
706 TTGGCTTAGGCATACGGAGTTCATTACCAGTCTAAGATCGGATCGGA-CCGAGGGTTGCGGCAGC
** * * * * * *
17431980 AGGATCGGTAGCACGTAGAGGGGGACCC-GTCGAGCCACGACTTGCGCATCCCACCCTTATGGCC
770 AGGATCGACAGCATGCAGAGGGGGACCCGGTCGATCCACGGCTTGCGCATCCCGCCC-TCTGGCC
* *
17432044 GGCTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
834 GGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
17432109 CCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTGGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
17432174 CTCGGGCAAGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACTGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCTCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGAAGA
* * * * * * *
17432239 ACCTGATCGACGACATTTGGGTTCTGACGATCGGGGGGGCCGGGGGGCGTGCGAACAGGATGTGC
131 ACCTGACCGACGGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
17432304 GATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
17432368 CCCCCTTAAAGAGCATTTGAGATTTTACAGCTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * *
17432433 GGGACACTATTTTCAAATGGTCACAAAATCCTATACACTTCGAGTTTTTAGCTGAATTGTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * *
17432498 ACATGGCAACAAAAATACAAGGATCACG-CTTACCAAGTTTCGGCCCGAAACTCCTTCCGAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTC-TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * ** *
17432562 ATTTTGAAAAATCTTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTT
455 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTT
*
17432627 GCCATGAAACTTCACATGAAGGCTTAACGGG-CCATTGTATGAATTTACAAGCCATAAAAATGGC
520 GCCATGAAACTTCACGTGAAGGCTTAA-GGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
17432691 ATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGT
584 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
17432756 GCATCCCATCTCTCTGGCCCGCGTGGTGCCCGCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGG
649 GCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG--C--CCGCTCGTTTCGTCGGTTGG
* * * * *
17432821 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGA-CCGACCGAGGGTTGGGGCAGCATGAT
710 CTTAGGCATACGGAGTTCATTACCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGGAT
* ** * * * *
17432885 CGGCAGCATGCAGAAAGGGACCCGGTTGATCCATGACTTGCGCATCCCACCCTTCTGGCCGGCTG
775 CGACAGCATGCAGAGGGGGACCCGGTCGATCCACGGCTTGCGCATCCCGCCC-TCTGGCCGGCTG
* * * * * *
17432950 AGCACCCGCACGCTCGTTTCGTGGGTTGACTCAGGCATATGGAGTTCATTTCCAATCTAA
839 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
17433010 CCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
17433075 CTCGGGCAAGTGCTGGTGCCGT-ATTTTTCTTCGCCGGGGCACAATCACCGAAGCGTCG-CGGAG
66 CTCGGGCATGTGCTGGTGCC-TCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGAAG
* * * * * * ** *
17433138 AACTTGACTGGCAGCATTAGGGTTCTGACAATCGGGGGTCCCGGGGGGGGTGTGCGCACATAATG
130 AACCTGACCGACGGCATTAGGGTTCCGACGATCGGGGGGGCC--GGGGGGTGTGCGCACATGATG
* *
17433203 TGTGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
17433268 ACACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTTGCTGCCAGTAGCCATTAAAGTGTCTAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGG-TTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
17433333 AATGGGGACACTTTTTTCAAACT-GTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTT
322 AATGGGGACACTTTTTTCAAA-TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * * * * *
17433397 TTGGTGCATGCCAACAAAAATACAAGGATCATGTCTACAAAGTTTGGGGACAAAACGCCATCCAA
386 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
*
17433462 AAAAATTTTAAAAAATCCCGAA
451 AAAAATTTTAAAAAATCTCGAA
17433484 TTGCAGAGGG
Statistics
Matches: 4290, Mismatches: 492, Indels: 268
0.85 0.10 0.05
Matches are distributed among these distances:
842 1 0.00
843 212 0.05
844 220 0.05
845 39 0.01
846 1 0.00
848 4 0.00
854 2 0.00
856 1 0.00
857 1 0.00
858 1 0.00
860 81 0.02
861 1 0.00
863 51 0.01
864 44 0.01
865 1 0.00
867 2 0.00
869 76 0.02
870 2 0.00
873 1 0.00
874 78 0.02
876 3 0.00
877 1 0.00
878 91 0.02
879 21 0.00
880 53 0.01
881 16 0.00
882 10 0.00
884 1 0.00
885 19 0.00
886 31 0.01
887 16 0.00
888 16 0.00
889 31 0.01
890 1 0.00
891 1 0.00
895 4 0.00
896 19 0.00
897 40 0.01
898 357 0.08
899 42 0.01
900 353 0.08
901 609 0.14
902 139 0.03
903 467 0.11
904 305 0.07
905 435 0.10
906 58 0.01
907 4 0.00
908 231 0.05
909 97 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (898 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCTCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGAAGA
ACCTGACCGACGGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
CATACGGAGTTCATTACCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGGATCGACAG
CATGCAGAGGGGGACCCGGTCGATCCACGGCTTGCGCATCCCGCCCTCTGGCCGGCTGAGCGCCC
GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:17431212 original size:26 final size:26
Alignment explanation
Indices: 17431175--17431227 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17431165 GTTGACTTAG
17431175 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
17431201 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17431227 G
1 G
17431228 ATTGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17432114 original size:26 final size:26
Alignment explanation
Indices: 17432084--17432134 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17432074 TTGACTTAGG
17432084 CATACGGAGTTCATTCCCAATCTAAC
1 CATACGGAGTTCATTCCCAATCTAAC
*
17432110 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAATCTAA
17432135 GATCAGACCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAATCTAAC
Found at i:17434034 original size:592 final size:592
Alignment explanation
Indices: 17432912--17434075 Score: 1688
Period size: 592 Copynumber: 2.0 Consensus size: 592
17432902 GGACCCGGTT
* * * *
17432912 GATCCATGACTTGCGCATCCCACCCTTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTT
1 GATCCATGACTTGCGCATCCCACCCCTCTAGCAGGCTGAGCACCCGCACGCTCATTTCGTGGGTT
* * *
17432977 GACTCAGGCATATGGAGTTCATTTCCAATCTAACCATACGAAGTTCATTCCCAGTCTAAGATCAG
66 GACTCAGGCATACGGAGTTCATTCCCAATCTAACCATACGAAGTTCATTCCCAATCTAAGATCAG
* * **
17433042 ACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAAGTGCTGGTGCCGTATTTTTCTTC
131 ACCGGACCGAGGGTCGCAGCAGCACATGCTGGGCTCGGGCAAGTGCTGGTGCCACATTTTTCTTC
** * * * *
17433107 GCCGGGGCACAATCACCGAAGCGTCGCGGAGAACTTGACTGGCAGCATTAGGGTTCTGACAATCG
196 GCCGGGGCACAATCACCGAAGCACCGCGGAGAACCTAACCGGCAGCATTAGGGTTCCGACAATCG
* * * *
17433172 GGGGTCCCGGGGGGGGTGTGCGCACATAATGTGTGATGGGTGTTGGTACTTGGCCCTTATATTGG
261 GGGGGCCCAGGGGGGGTGTGCGCACATAATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
17433237 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGAATTTGAGATTTTACAGG
326 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGAATTTGAGATTTTACAGG
* *
17433302 TTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAACTGTCACAAAATC
391 TTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACCTTTTTCAAACTGCCACAAAATC
* *
17433367 TTGTACACTTTGAGTTTTTAGCTGAATTTTTTGGTGCATGCCAACAAAAATACAAGGATCATGTC
456 TTGTACACTTTGAGTTTTTAGCTGAATTTTTTGGTGCATGCCAAAAAAAATACAAGGATCACGTC
17433432 TACAAAGTTTGGGGACAAAACGCCATCCAAAAAAATTTTAAAAAATCCCGAATTGCAGAGGGGGA
521 TACAAAGTTTGGGGACAAAACGCCATCCAAAAAAATTTTAAAAAATCCCGAATTGCAGAGGGGGA
17433497 CCCAGCC
586 CCCAGCC
* * * * *
17433504 GATCCCTGGCTTGCGCAT-CCAGCCCCTCTAGCAGGTTGAGCGCCTGCACGCTCATTTCGTGGGT
1 GATCCATGACTTGCGCATCCCA-CCCCTCTAGCAGGCTGAGCACCCGCACGCTCATTTCGTGGGT
* * * * * *
17433568 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCGTATGAAGTTCATTCCCAATCTAAGATCG
65 TGACTCAGGCATACGGAGTTCATTCCCAATCTAACCATACGAAGTTCATTCCCAATCTAAGATCA
* * *
17433633 GAGCGGACCGAGGGTCGCAGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTT
130 GACCGGACCGAGGGTCGCAGCAGCACATGCTGGGCTCGGGCAAGTGCTGGTGCCACATTTTTCTT
* * *** * * * *
17433698 CTCCGGGGCACCATCGTTGGAGCACCGTCTGAGAACCTAACCGGCGGCATTGGGGTTCCGACAAT
195 CGCCGGGGCACAATCACCGAAGCACCG-CGGAGAACCTAACCGGCAGCATTAGGGTTCCGACAAT
* * **
17433763 CGGGGGGGCCAGGTGGGGTGTGCGCACATGGTGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
259 CGGGGGGCCCAGGGGGGGTGTGCGCACATAATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* * *
17433828 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTATA
324 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGAATTTGAGATTTTACA
*
17433893 GG-TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACCTTTTTCAAA-TGGCCACAAA
389 GGTTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACCTTTTTCAAACT-GCCACAAA
17433956 ATCTTGTACACTTTGAGTTTTTAGCTGAATGTTTTT-GTGCATGCCAAAAAAAATACAAGGATCA
453 ATCTTGTACACTTTGAGTTTTTAGCTGAAT-TTTTTGGTGCATGCCAAAAAAAATACAAGGATCA
* * * * * * * *
17434020 CGTCTACCAAGTTTGGGGCCAAAGCTCCTTTCGAAAAAATTTTAAAAAATCTCGAA
517 CGTCTACAAAGTTTGGGGACAAAACGCCATCCAAAAAAATTTTAAAAAATCCCGAA
17434076 CCGCAAAAAG
Statistics
Matches: 504, Mismatches: 64, Indels: 8
0.88 0.11 0.01
Matches are distributed among these distances:
591 4 0.01
592 344 0.68
593 156 0.31
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.26
Consensus pattern (592 bp):
GATCCATGACTTGCGCATCCCACCCCTCTAGCAGGCTGAGCACCCGCACGCTCATTTCGTGGGTT
GACTCAGGCATACGGAGTTCATTCCCAATCTAACCATACGAAGTTCATTCCCAATCTAAGATCAG
ACCGGACCGAGGGTCGCAGCAGCACATGCTGGGCTCGGGCAAGTGCTGGTGCCACATTTTTCTTC
GCCGGGGCACAATCACCGAAGCACCGCGGAGAACCTAACCGGCAGCATTAGGGTTCCGACAATCG
GGGGGCCCAGGGGGGGTGTGCGCACATAATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGAATTTGAGATTTTACAGG
TTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACCTTTTTCAAACTGCCACAAAATC
TTGTACACTTTGAGTTTTTAGCTGAATTTTTTGGTGCATGCCAAAAAAAATACAAGGATCACGTC
TACAAAGTTTGGGGACAAAACGCCATCCAAAAAAATTTTAAAAAATCCCGAATTGCAGAGGGGGA
CCCAGCC
Found at i:17434516 original size:26 final size:26
Alignment explanation
Indices: 17434480--17434558 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
17434470 GTTGACTGAG
17434480 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17434506 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17434532 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17434558 G
1 G
17434559 ATCAGACCGG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17435447 original size:26 final size:26
Alignment explanation
Indices: 17435411--17435463 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17435401 GTTGACTGAG
17435411 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
**
17435437 GCATACGGAGTTCATTCTTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17435463 G
1 G
17435464 ATCGGACAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17437217 original size:26 final size:26
Alignment explanation
Indices: 17437181--17437233 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17437171 GTTGACTTAG
*
17437181 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17437207 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17437233 G
1 G
17437234 ATCATATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17439307 original size:714 final size:706
Alignment explanation
Indices: 17437207--17439405 Score: 3103
Period size: 714 Copynumber: 3.1 Consensus size: 706
17437197 CCTAGTCTAA
* * * * * **
17437207 GCATACAGAGTTCATTCCCAGTCTAAGATCATATCGAACCAAGGGTTGCAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCACATGCTGGG
*
17437272 CTAGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT--C--G--TCG--GAGAACC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCCCGAGCATCGCCGAGAACC
* *
17437329 TGACC-AGTGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGAGATGTGCGCACATGATGTGCG
131 TGACCGA-CGGCATTGGGGTTCC-GCGATCGGGGGGCCAGGGG-GATGTGCGCACATGATGTGCG
**
17437393 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCAACTATCCCTCATCAAACTTCGAGAACTCACAC
193 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC-TCGAGAACTCACAC
* * * *
17437458 CCCTTTAAAGAGCATTTGAGATTTTACAGGCTCGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
257 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGG
* * * * *
17437523 GGACACTATTTTGAAATGGTCACAAAATCTTGTACAGTTCGATTTTTTAGCTGAATTTTTTTATG
322 GGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTG
* *
17437588 CATGCCAAAAAAAATACAAGGATCACGTCTATCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAAT
387 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCCGAAAAAAT
17437653 TTAAAAAAATCCC-AAGCCGTAAAAAGTTTTAAAATTCGTGAAAAATA-AGAAACGAGTCGTCTT
451 TTAAAAAAATCCCGAA-CCGTAAAAAGTTTTAAAA-TCGTGAAAAATAGA-AAACGAGTCGTCTT
17437716 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGTCA
513 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGTCA
* * *
17437781 TTGGCATGTAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
578 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
17437846 CAT-CCTGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCCCGCCCGTTCATTTCGTCGGTTGG
643 CATCCCT-TCTCTCTGGCC-GCGTAGTG-CC-CCC-CCCGCCCGCCCGCTCATTTCGTCGGTTGG
17437910 CTTAG
703 -TTAG
* ** * * *
17437915 GCATACCGAGTTTGTTTCCAGTCTAAGATCGGACCGGACCGAGGGCTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCACATGCTGGG
* * ** *
17437980 CTCGTGCATGTGCTTGTGGTGCATTTTTCTTCGTCGGGGCACCATCACCAGAGCATTGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-CC-GAGCATCGCC-GAGA
* * *
17438045 ACCTGACTGACGGCATCGGGGTTCCGAAGATCTGGGGGGCCAGGGGGCATGTGCGCACATGATGT
128 ACCTGACCGACGGCATTGGGGTTCCG-CGATC-GGGGGGCCAGGGGG-ATGTGCGCACATGATGT
* * *
17438110 GTGATGGGTGCAGGTACTTGGCCCTTCTATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
190 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA-CTCGAGAACTCA
*
17438175 CACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
254 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
* *
17438240 TGGGGACACTTTTTTC-AATTGCTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTT
319 TGGGGACACTTTTTTCAAATGGC-CACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTT
* * * * * * *
17438304 TGTGCATGCGAACAAAATATACAAGGATCCCATCTGCCATGTTTGGTGCCAAAACTCCTTCTGAA
383 TGTGCATGCCAA-AAAAAATACAAGGATCACGTCTACCAAGTTTGG-GCCAAAACTCCTTCCGAA
* * *
17438369 AAAATTTCAAAAAATCTCGAACCGTAAAAAGTTTCAGAAATCGTGAAAAATAGAAAACGAGTCGT
446 AAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTTA-AAATCGTGAAAAATAGAAAACGAGTCGT
*
17438434 CTTGCCATGAAACTTCACGTGAAGGCTGAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
510 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
17438499 TCTTTGGCATGCAGAAATACGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTT
575 TCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
17438564 GCGCATCCCGTCTCTCTCGCCGACGTAGTG-CCCCCCCGCCCGCCCGCTCATTTCGTCGGTTGGT
640 GCGCATCCCTTCTCTCTGGCCG-CGTAGTGCCCCCCCCGCCCGCCCGCTCATTTCGTCGGTTGGT
17438628 TAG
704 TAG
* *
17438631 GCATATGGAGTTCATTTCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCACATGCTGGG
* ** *
17438696 CTCGGGCATGTTCTGGTGCCGCATTTTTCTTCACCTGGGCACCATCCCCGGAGCATCGCCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT-CCC-GAGCATCGCC-GAGA
* * * *
17438761 ACCTGACCGACGACATTGGAGTTCTTGCGATCGGGGGGGCCAGGGGGATGTGCGCGCATGATGTG
128 ACCTGACCGACGGCATTGGGGTTC-CGCGATC-GGGGGGCCAGGGGGATGTGCGCACATGATGTG
*
17438826 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAGCTCGAGAACTCGC
191 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA-CTCGAGAACTCAC
*
17438891 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTAAAAT
255 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
*
17438956 GGAGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTG
320 GGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTG
*
17439021 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCATTCCGAAAAA
385 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGG-CCAAAACTCCTTCCGAAAAA
* * * *
17439086 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTT
449 ATTTAAAAAAATCCCGAACCGTAAAAAGTTTT-AAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
17439151 GCCATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
513 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGTCA
* * *
17439216 TTGGCATGCAGAAATATAAAGCTGTGCCTAAACCCACCGACCACCCTATCGATCCACGGCTTGCG
578 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
17439281 CATCCCTTCTCTCTGGCCAGCGTAGTGCCCGCCCGCCTGCCCGCCCGCTCGTTTCTTCAGTTGGG
643 CATCCCTTCTCTCTGGCC-GCGTAGTGCCC-CCC-CC-GCCCGCCCGCTCATTTCGTCGGTT-GG
17439346 TTAG
703 TTAG
** **
17439350 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGATAGAGGGTTGTGGCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCA
17439406 GGATCGGCAG
Statistics
Matches: 1324, Mismatches: 132, Indels: 59
0.87 0.09 0.04
Matches are distributed among these distances:
708 93 0.07
711 1 0.00
713 1 0.00
714 248 0.19
715 209 0.16
716 163 0.12
717 32 0.02
718 25 0.02
719 90 0.07
720 214 0.16
721 240 0.18
722 8 0.01
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (706 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCCCGAGCATCGCCGAGAACC
TGACCGACGGCATTGGGGTTCCGCGATCGGGGGGCCAGGGGGATGTGCGCACATGATGTGCGATG
GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTCGAGAACTCACACCCCC
TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGAC
ACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATG
CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAACTCCTTCCGAAAAAATTTAAA
AAAATCCCGAACCGTAAAAAGTTTTAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGTCATTGGCATG
CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCTT
CTCTCTGGCCGCGTAGTGCCCCCCCCGCCCGCCCGCTCATTTCGTCGGTTGGTTAG
Found at i:17439518 original size:26 final size:26
Alignment explanation
Indices: 17439488--17439540 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17439478 GTTGACTTAG
17439488 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
17439514 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17439540 G
1 G
17439541 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17440418 original size:26 final size:26
Alignment explanation
Indices: 17440389--17440439 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17440379 GGTTGACTTA
17440389 AGCATACGAAGTTCATTCCCAGTCTC
1 AGCATACGAAGTTCATTCCCAGTCTC
*
17440415 AGCATACGGAGTTCATTCCCAGTCT
1 AGCATACGAAGTTCATTCCCAGTCT
17440440 AAGATCGGAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.27
Consensus pattern (26 bp):
AGCATACGAAGTTCATTCCCAGTCTC
Found at i:17441063 original size:872 final size:867
Alignment explanation
Indices: 17438717--17441350 Score: 3498
Period size: 881 Copynumber: 3.0 Consensus size: 867
17438707 TCTGGTGCCG
* * * * *
17438717 CATTTTTCTTCACCTGGGCACCATCCCCGGAGCATCGCCAGAGAACCTGACCGACGACATTGGAG
1 CATTTTTCTTCATCAGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACG-GATTGGAG
** * *
17438782 TTCTTGCGATCGGGGGGGCCAGGGGGATGTGCGCGCATGATGTGCGATGGGTGCTGGTACTTGGC
65 TTCCGGCGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGTGC-ATGGGTGCTGGTACTTGGC
* *
17438847 CCTTATATTGGCCCCCTATCCCTCATCAAAGCTCGAGAACTCGCACCCCCTTAAAGAGCATTTGA
129 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* *
17438912 GATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTAAAATGGAGACACTTTTTTCAAATGG
194 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGG
* *
17438977 CCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAA
259 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AAAAAAATACAA
* *
17439042 GGATCACGTCTACCAAGTTTGGGACCAAAACTCATTCCGAAAAAATTTTAAAAAATCCCGAACCG
323 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCG
* * *
17439107 CAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAA
388 CAAAAAGTTTTGAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
*
17439172 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATAAAG
453 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* * * * *
17439237 CTGTGCCTAAACCCACCGACCACCCTATCGATCCACGGCTTGCGCATCCCTTCTCTCTGGCCAGC
518 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGGC
* * * *
17439302 GTAGTGCCCGCCCGCCTGCCCGCCCGCTCGTTTCTTCAGTTGGGTTAGGCATACGGAGTTCATTC
583 GTAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTC
* ** *
17439367 CCAGTCTAAGATTGGACCGGATAGAGGGTTGTGGCAGCAGGATCGGCAGCAC-GCAGAGGGTGAC
648 CCAGTCTAAGATAGGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGC-CTGCAGAGGGGGAC
* *
17439431 CTGACCGAT---C-C---T-C-TG-G--C-C--G-G-CTGAGTGCCCGCACGCTGGTTTCATGGG
712 CAGACCGATCCCCGCTTGTGCATGCGCCCTCTGGCGACTGAGTGCCCGCACGCTCGTTTCATGGG
17439479 TTGACTTAGGCATAC-AGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
777 TTGACTTAGGCATACGA-AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
17439543 CGGACCGGA-TCGAGGGTTGCGACAGCACATGCTGGGCAA
841 CGGACCGGACT-GAGGGTT---ACAG--CA------GC-A
* * * *
17439582 GTGCATGTGCCGGTGCCGCTTTTTTCTTCATTGGGTCACCATCGCCAGAGCATCGTCGGAGAACC
1 ---CA--T-----T-----TTTCTTCATCA--GGG-CACCATCGCCGGAGCATCGCCGGAGAACC
* *
17439647 TGACCGACGGATTAGAGTTCCGACGATCGGGGGGGCCA-GGGGGTGTGCGCACATGATGTGCAGT
48 TGACCGACGGATTGGAGTTCCGGCGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCA-T
* * * *
17439711 GAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCGTCATCATATCTCGAGAACTCACACCC
112 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * *
17439776 CCTTAAAGAGCATGTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGG
177 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGG
* * *
17439841 ACACTTTTTTCAAATGATCCCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTGTGTGCA
242 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * *
17439906 TACCAAAAAAAGTACAAGGATCACGACCACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAACTT
307 TGCCAAAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA-TT
** * ** *
17439970 TTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAATACGAGTCGTCTTGCC
370 TTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCC
* *
17440035 ATGAAACTTCACATGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGGCATTG
435 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * *
17440100 GCATGCAAAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTTGTACAT
500 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACAT
* * *
17440165 CCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTCTGCCCACTCGTTTCATCAGTTGGCTTA
565 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCATCAGTTGGCTTA
* *
17440230 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGATCGGT
630 GGCATACGGAGTTCATTCCCAGTCTAAGATAGGACCGGACCGAGGGTTGTGGCAGCAGGATCGGC
* * *
17440295 AACCTGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATGCTGCCCTTCTGGCCGACTGAGCG
695 AGCCTGCAGAGGGGGACCAGACCGATCCCC-GCTTGTGCATGC-GCCC-TCTGG-CGACTGAGTG
* * * * *
17440360 CCCGTACGTTCGTTTCGTGGGTTGACTTAAGCATACGAAGTTCATTCCCAGTCTCAGCATACGGA
756 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGA
*
17440425 GTTCATTCCCAGTCTAAGATCGGACCGAACTGAGGGTTACAGCAGCA
821 GTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTACAGCAGCA
* *
17440472 CATTTTTCTTCATCAGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGATTGGGGT
1 CATTTTTCTTCATCAGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGATTGGAGT
17440537 TCCGGCGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGTGTCATGGGTGCTGGTACTTGGCC
66 TCCGGCGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGTG-CATGGGTGCTGGTACTTGGCC
*
17440602 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGTGCATTTGAG
130 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
*
17440667 ATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGT
195 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGT
* *
17440732 CACAAAATCTTGTATACTTCGAGTTTTTAGGTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
260 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAATACAAG
*
17440797 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA-TTTAAAAAATCCCAAACCGC
324 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGC
* * *
17440861 AAAAAGTTTTGAAAATCTTGAAAAATAAAAAATGAGTCGTCTTGGCATGAAACTTCACGTGAAGG
389 AAAAAGTTTTGAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
*
17440926 CTTAAGGGACCGTTGTATGAATTTACACA-CCATAAAAATGGCATTGGCATGCAGAAATATGAAG
454 CTTAAGGGACCATTGTATGAATTTACA-AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* * * *
17440990 ATGTGCCTAAACCCACCTACCACCCTATTGATCCACGACTTGCACATCTCGTCTCTCTGGTCGGC
518 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGGC
* * * * * * *
17441055 GCAGTGCCCGCCCGCCCGCCCGCTCGCCCGTTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTT
583 GTAGTGCCCGCCCGCCCG--C-CT-GCCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTC
* * * * * ** * *
17441120 ATTCCAAGTCTAAGATAGGATCAGACCAAAGGTTGCAGCAGTAGGATCGGCAGCATGCAGAGGGG
644 ATTCCCAGTCTAAGATAGGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCCTGCAGAGGGG
* * * *
17441185 GACTAGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGTCGACTGAGTGCCCGCACGCTCGTT
709 GACCAGACCGATCCCCG-CTTGTGCAT-GCG-CCCTCTGG-CGACTGAGTGCCCGCACGCTCGTT
* * * *
17441250 TCTTGGGTTGACTTAGGCATACGGAGTTCGTTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTC
770 TCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* * * **
17441315 TAAGATTGGATCGGACCGAGGGTTATGGCAGCA
835 TAAGATCGGACCGGACTGAGGGTTACAGCAGCA
17441348 CAT
1 CAT
17441351 GCTGGGCTCG
Statistics
Matches: 1547, Mismatches: 165, Indels: 100
0.85 0.09 0.06
Matches are distributed among these distances:
868 2 0.00
870 1 0.00
872 269 0.17
873 254 0.16
874 13 0.01
875 13 0.01
876 223 0.14
877 4 0.00
880 23 0.01
881 561 0.36
882 27 0.02
883 34 0.02
884 1 0.00
885 1 0.00
886 1 0.00
887 2 0.00
889 1 0.00
890 2 0.00
891 4 0.00
893 1 0.00
895 1 0.00
897 3 0.00
899 5 0.00
901 1 0.00
902 98 0.06
903 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (867 bp):
CATTTTTCTTCATCAGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGATTGGAGT
TCCGGCGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCATGGGTGCTGGTACTTGGCCC
TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTC
ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAATACAAGGA
TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAA
AAAGTTTTGAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGGCGTA
GTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCA
GTCTAAGATAGGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCCTGCAGAGGGGGACCAGA
CCGATCCCCGCTTGTGCATGCGCCCTCTGGCGACTGAGTGCCCGCACGCTCGTTTCATGGGTTGA
CTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
CGGACTGAGGGTTACAGCAGCA
Found at i:17441302 original size:26 final size:26
Alignment explanation
Indices: 17441266--17441318 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17441256 GTTGACTTAG
* *
17441266 GCATACGGAGTTCGTTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17441292 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17441318 G
1 G
17441319 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17442082 original size:26 final size:26
Alignment explanation
Indices: 17442046--17442098 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17442036 GTTGACTTAG
17442046 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17442072 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17442098 G
1 G
17442099 ATCGGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17443349 original size:858 final size:861
Alignment explanation
Indices: 17441683--17444802 Score: 3915
Period size: 858 Copynumber: 3.6 Consensus size: 861
17441673 AATAGAAAAT
* * * *
17441683 GAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGATCATTGCATGAATTTACAAGCCAT
1 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCAT
*
17441748 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCC
66 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * * **
17441813 TTGGCTTGCGTATCTCGTCTCTCTGGTCGGCGTAGTGCCCGA-CCGCCCGCCCTCTTATTTCATC
131 ATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC-ACCCGCCCGCCCTCTCGTTTCATC
* * * *
17441877 ACTTAGCTTAGGCATACGGAGTTCATTTCTAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAG
195 GCTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAG
* * * * ** * * ** *
17441942 TAAGATCGGCAGCACATAGAGGGGGGCCCGTTCGAT-CCCAGCTTGCGCGTCCAACCCCTCTAGC
260 CAGGATCGGCAGCACATAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
17442006 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTA
325 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTA
* * * *
17442071 AGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACAGCAGCACATTCTGG
390 AGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCTGG
* * *
17442136 GCTTGGGCATGTGCTGGTGTCGCATTTTTGTTCATCGGGGCACCATCACCCGAGAAGTTGATCGA
455 GCTCGGGCATGTGCTGGTGCCGCATTTTTGTTCATCGGGGCACCATCACCAGAGAAGTTGATCGA
* * * * **
17442201 CGGTATTGGGGTTTTGGCAATCGGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCT
520 CGGCATTGGGGTTTCGACGATC-GGGGGGCCGGGGGGTGTGTGCACATGATGTGCGATGGGTGCT
* *
17442266 GGTAGTTGGCCTTTATATTTGCCCCCTATCCCTCATCAAACCTCCAGAACTCACACCCCCTTAAA
584 GGTACTTGGCCTTTATATTTGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
** *
17442331 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCTTTAAAGTGTCTGGAATAGGGACACTTT
649 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCTTTAAAGTGTCTAAAATGGGGACACTTT
*
17442396 TTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAAA
714 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AA
* **
17442460 AAAAAATACAAGGATCACATCTACAAAGTTTGGGGCCAAAACACCTT-CTGAAAAATTTTAAAAA
778 AAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACACCTTCCAAAAAAATTTTAAAAA
17442524 AT-CC-C-AAATCGCAAAC
843 ATCCCACAAAATCGCAAAC
*
17442540 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTGCAAGCCAT
1 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCAT
**
17442605 AAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
66 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* *
17442670 ATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCTCTTGTTTCGTCG
131 ATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCTCTCGTTTCATCG
* * * * * * *
17442735 CTTGGCTTAGGCATACGGAGTTCATTTCTAGTCTAAGATTAGACTGGACTGAGGGTTGTGGGAGT
196 CTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGC
*
17442800 AGGATCGGCAGCACATAGAAGGGGACCCGACCGATCCCCGGCTTGCACAT-CCGTCCCCTCTGGC
261 AGGATCGGCAGCACATAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCG-CCCCTCTGGC
* * *
17442864 AGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCGTAAAGAGTTCATTCCCAGTCTA
325 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTA
* **
17442929 AGCATA-TGAAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGGCAGCACATGCTG
390 AGCATACAG-AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCTG
* *
17442993 GGCTCGGGCATGTGCTGGTGCCGCATTTTTGTTCGTCGGGGCACCATCACCGGAGAAGTTGATCG
454 GGCTCGGGCATGTGCTGGTGCCGCATTTTTGTTCATCGGGGCACCATCACCAGAGAAGTTGATCG
* * *
17443058 ACGGCATTGGGGTTCCGACGATCGGGGGGTCTGGGCGGTGTGTGCACATGATGTGCGATGGGTGC
519 ACGGCATTGGGGTTTCGACGATCGGGGGG-CCGGGGGGTGTGTGCACATGATGTGCGATGGGTGC
*
17443123 TGGTACTTGGCTTTTATATTTGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
583 TGGTACTTGGCCTTTATATTTGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * *
17443188 AGAGCATTTCATATTTTAAAGGTTTGCTGCCAGTAGCCTTTAAAGTGTCTAAAATGGGGACACTT
648 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCTTTAAAGTGTCTAAAATGGGGACACTT
*
17443253 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAA
713 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* *
17443318 CAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACAGCTTCCAAAAAAATTTTAAAAA
778 AAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACACCTTCCAAAAAAATTTTAAAAA
*
17443383 ATCCCGAACCTCAAAAAGTTTTAAAAATCGTAAAAAATAGAAAAC
843 ATCCC--A---C-----------AAAATC----------GCAAAC
* *
17443428 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGAACCATTCTATGAATTTACAAGCCAT
1 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCAT
* *
17443493 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGTTCC
66 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * * * * *
17443558 ATGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCTCGCTCGCCTGCCCGCTCGTTTCGTCG
131 ATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCTCTCGTTTCATCG
* * * * * * *
17443623 GTTGGCTTAGGCATACGGACTTCATTCCCAGTCTAAGATCAGACCAGACCGATGGTTACGACAGC
196 CTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGC
* *
17443688 AGGATTGGCAGCACGTATAG-A-GGGACCC-AGCCGATTCCCGGCTTGCGCATCCCGCCCCTCTG
261 AGGATCGGCAGCAC--ATAGAAGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
* * * * * * *
17443750 GCCCGCTGAGCGCCCGCATGCTCATTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCCACTC
323 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTC
*
17443815 TAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCT
388 TAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCT
* * * * * * *
17443880 GGCCTCGAGCATGTGCTGGTGGCACATTTTTCTTCACCGAGGCACCATCGTAGGAGCATCATCAG
453 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTGTTCATCGGGGCACCA---T-----CA-C--CAG
** * ** * *
17443945 AGAACCTGACCGACGGCATTAAGGTTTCGACGATCGGGGTGCCGGGGGGGGTGTTGGCACATGAT
507 AGAAGTTGATCGACGGCATTGGGGTTTCGACGATCGGGGGGCCGGGGGGTGTG-T-GCACATGAT
* * *
17444010 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAAAACT
570 GTGCGATGGGTGCTGGTACTTGGCCTTTATATTTGCCCCCTATCCCTCATCAAACCTCGAGAACT
**
17444075 CACACCCCCTTAAAGAGCA-TTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTC-AG
635 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCTTTAAAGTGTCTA-
*
17444138 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTT
699 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
** * * *
17444203 TTTAAGCATTCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAA
764 TTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACACCTTCCAA
17444268 AAAAATTTTAAAAAATCTTGAGCCGCAAAAAGTTTCAAAAATCGTCAAAAATAGAAAAC
829 AAAAATTTTAAAAAA---T---CC-C----A----C-AAAATCG-C---------AAAC
* * * *
17444327 GAGTCATCTTGCCATGAAACTTCACGTAAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCAT
1 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCAT
*
17444392 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATGGATCC
66 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * * **
17444457 ACGGGTTGTGCATCCCGTCTCTCTGGCCGACGTA--G--CGTCCGCCCG-CCTACTCGTTTCATC
131 ATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCT-CTCGTTTCATC
* * * *
17444517 GGTTGGCTTAGGCATATGGAGTTCATTCCTAGTCTAAGAT-AGGACCGAACCAAGGGTTGCGGCA
195 GCTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCA-GACCGGACCGAGGGTTGCGGCA
* ** * *
17444581 GCAGGATCGACAGCACGCAGAAGGGGACCCGACCGATCCCCGACTTACGCATCCCGCCCCTCTGG
259 GCAGGATCGGCAGCACATAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * * *
17444646 CCGGCTGAGCGCCAGCATGCTCGTTTCGTGGGTTGACTTAGGCATGCAGAGTTCATTCCTAGTCT
324 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCT
* * * * * *
17444711 AAGCATACGGAGTTCATTCCCAATCTAAGATCAGATCAGACCGAGGGTTGCGACAGCACATGCTG
389 AAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCTG
*
17444776 GGCT-GGAACATGTGCTGGTGCCGCATT
454 GGCTCGG-GCATGTGCTGGTGCCGCATT
17444803 AAAGTGTTTG
Statistics
Matches: 1973, Mismatches: 209, Indels: 124
0.86 0.09 0.05
Matches are distributed among these distances:
856 1 0.00
857 276 0.14
858 461 0.23
859 32 0.02
860 2 0.00
866 1 0.00
878 5 0.00
887 1 0.00
888 436 0.22
889 6 0.00
890 4 0.00
891 1 0.00
893 2 0.00
894 5 0.00
895 257 0.13
896 3 0.00
897 2 0.00
898 10 0.01
899 371 0.19
900 89 0.05
902 1 0.00
905 2 0.00
906 1 0.00
908 2 0.00
909 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (861 bp):
GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCAT
AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
ATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCTCTCGTTTCATCG
CTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGC
AGGATCGGCAGCACATAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTGTTCATCGGGGCACCATCACCAGAGAAGTTGATCGAC
GGCATTGGGGTTTCGACGATCGGGGGGCCGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGG
TACTTGGCCTTTATATTTGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCTTTAAAGTGTCTAAAATGGGGACACTTTTT
TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
AAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACACCTTCCAAAAAAATTTTAAAAAATC
CCACAAAATCGCAAAC
Found at i:17443822 original size:26 final size:26
Alignment explanation
Indices: 17443792--17443844 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17443782 GTTAACTTAG
*
17443792 GCATACGGAGTTCATTCCCACTCTAA
1 GCATACAGAGTTCATTCCCACTCTAA
*
17443818 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCACTCTAA
17443844 G
1 G
17443845 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCACTCTAA
Found at i:17444410 original size:899 final size:884
Alignment explanation
Indices: 17442536--17444802 Score: 3161
Period size: 888 Copynumber: 2.5 Consensus size: 884
17442526 CCCAAATCGC
*
17442536 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTGCAAG
1 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAG
**
17442601 CCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
66 CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * *
17442666 ATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCCTCTTGTTTC
131 ATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--CTCCCGCCCGCCCACTCGTTTC
* * * * *
17442731 GTCGCTTGGCTTAGGCATACGGAGTTCATTTCTAGTCTAAGATTAGACTGGACTGAGGGTTGTGG
194 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGA-TAGAC-CGACCGAGGGTTGCGG
* * *
17442796 GAGTAGGATCGGCAGCAC-ATAGAAGGGGACCCGACCGATCCCCGGCTTGCACAT-CCGTCCCCT
257 CAGCAGGATCGGCAGCACGATAG-AGGGGACCCGACCGATCCCCGGCTTGCGCATCCCG-CCCCT
* * * *
17442859 CTGGCAGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCGTAAAGAGTTCATTCCCA
320 CTGGCCGGCTGAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCA
* ** *
17442924 GTCTAAGCATA-TGAAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGGCAGCACA
385 GTCTAAGCATACAG-AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACA
* * * ** * * **
17442988 TGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTGTTCGTCGGGGCACCATCACCGGAGAAGTT
449 TGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCACCGAGGCACCATCACCAGAGAACCT
* ** * *
17443053 GATCGACGGCATTGGGGTTCCGACGATCGGGGGGTCTGGGCGGTGTGTGCACATGATGTGCGATG
514 GACCGACGGCATTAAGGTTCCGACGATCGGGGGGCCGGGGCGGTGTGTGCACATGATGTGCGATG
** * *
17443118 GGTGCTGGTACTTGGCTTTTATATTTGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
579 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAAAACTCACACCCC
* **
17443183 CTTAAAGAGCATTTCATATTTTAAAGGTTTGCTGCCAGTAGCCTTTAAAGTGTCTAAAATGGGGA
644 CTTAAAGAGCATTTCAGATTTTAAAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTAAAATGGGGA
**
17443248 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCAT
709 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTAAGCAT
* *
17443313 GCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACAGCTTCCAAAAAAATTTT
774 GCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACACCTTCCAAAAAAATTTT
* *
17443378 AAAAAATCCCGAACCTCAAAAAGTTTTAAAAATCGTAAAAAATAGA
839 AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTAAAAAATAGA
* *
17443424 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGAACCATTCTATGAATTTACAAG
1 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAG
*
17443489 CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCG
66 CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * * *
17443554 TTCCATGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCTCGCTCGCCTGCCCGCTCGTTTC
131 ATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTC-C-CGCCCGCCCACTCGTTTC
* * * * *
17443619 GTCGGTTGGCTTAGGCATACGGACTTCATTCCCAGTCTAAGATCAGACCAGACCGATGGTTACGA
194 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGAT-AGACC-GACCGAGGGTTGCGG
* *
17443684 CAGCAGGATTGGCAGCACGTATAGA-GGGACCC-AGCCGATTCCCGGCTTGCGCATCCCGCCCCT
257 CAGCAGGATCGGCAGCACG-ATAGAGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCT
* * * * *
17443747 CTGGCCCGCTGAGCGCCCGCATGCTCATTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCCA
320 CTGGCCGGCTGAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCA
*
17443812 CTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACAT
385 GTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACAT
* *
17443877 GCTGGCCTCGAGCATGTGCTGGTGGCACATTTTTCTTCACCGAGGCACCATCGTAGGAGCATCAT
450 GCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCACCGAGGCACCA---T-----CA-C--
* * *
17443942 CAGAGAACCTGACCGACGGCATTAAGGTTTCGACGATCGGGGTGCCGGGG-GGGGTGTTGGCACA
504 CAGAGAACCTGACCGACGGCATTAAGGTTCCGACGATCGGGGGGCCGGGGCGGTGTG-T-GCACA
17444006 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAA
567 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAA
* *
17444071 AACTCACACCCCCTTAAAGAGCA-TTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGT
632 AACTCACACCCCCTTAAAGAGCATTTCAGATTTTAAAGGTTTGCTGCCAGTAGCAATTAAAGTGT
* *
17444135 C-AGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAA
697 CTA-AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAA
* * *
17444199 TTTTTTTAAGCATTCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
761 TTTTTTTAAGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACACCTT
** * *
17444264 CCAAAAAAATTTTAAAAAATCTTGAGCCGCAAAAAGTTTCAAAAATCGTCAAAAATAGA
826 CCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTAAAAAATAGA
* * * *
17444323 AAACGAGTCATCTTGCCATGAAACTTCACGTAAAGGCTTAAGGGACCGTTGTATGAATTTACAAG
1 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAG
*
17444388 CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATGG
66 CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * * * * * *
17444453 ATCCACGGGTTGTGCATCCCGTCTCTCTGGCCGACGTAGCG-T-CCGCCCGCCTACTCGTTTCAT
131 ATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCCCGCCCGCCCACTCGTTTCGT
* *
17444516 CGGTTGGCTTAGGCATATGGAGTTCATTCCTAGTCTAAGATAGGACCGAACCAAGGGTTGCGGCA
196 CGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATA-GACCG-ACCGAGGGTTGCGGCA
* * * *
17444581 GCAGGATCGACAGCACG-CAGAAGGGGACCCGACCGATCCCCGACTTACGCATCCCGCCCCTCTG
259 GCAGGATCGGCAGCACGATAG-AGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
* * *
17444645 GCCGGCTGAGCGCCAGCATGCTCGTTTCGTGGGTTGACTTAGGCATGCAGAGTTCATTCCTAGTC
323 GCCGGCTGAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTC
* * * * *
17444710 TAAGCATACGGAGTTCATTCCCAATCTAAGATCAGATCAGACCGAGGGTTGCGACAGCACATGCT
388 TAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCT
* * *
17444775 GGGCTGGAACATGTGCTGGTGCCGCATT
453 GGGCTCGAGCATGTGCTGGTGCCACATT
17444803 AAAGTGTTTG
Statistics
Matches: 1216, Mismatches: 135, Indels: 49
0.87 0.10 0.04
Matches are distributed among these distances:
886 2 0.00
887 3 0.00
888 431 0.35
889 5 0.00
890 4 0.00
891 1 0.00
893 2 0.00
894 3 0.00
895 260 0.21
896 4 0.00
897 1 0.00
898 7 0.01
899 404 0.33
900 89 0.07
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.25
Consensus pattern (884 bp):
AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAG
CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
ATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCCCGCCCGCCCACTCGTTTCGT
CGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATAGACCGACCGAGGGTTGCGGCAGC
AGGATCGGCAGCACGATAGAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
GGCTGAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGAGCATGTGCTGGTGCCACATTTTTCTTCACCGAGGCACCATCACCAGAGAACCTGACCGAC
GGCATTAAGGTTCCGACGATCGGGGGGCCGGGGCGGTGTGTGCACATGATGTGCGATGGGTGCTG
GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAAAACTCACACCCCCTTAAAG
AGCATTTCAGATTTTAAAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTAAAATGGGGACACTTTT
TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTAAGCATGCCAAAA
AAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACACCTTCCAAAAAAATTTTAAAAAAT
CCCGAACCGCAAAAAGTTTCAAAAATCGTAAAAAATAGA
Found at i:17445396 original size:26 final size:26
Alignment explanation
Indices: 17445366--17445418 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17445356 CTTGACTTAG
17445366 GCATACAGAGTTCATTCCCAGTATAA
1 GCATACAGAGTTCATTCCCAGTATAA
* *
17445392 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTATAA
17445418 G
1 G
17445419 ACCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTATAA
Found at i:17446304 original size:26 final size:26
Alignment explanation
Indices: 17446268--17446319 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
17446258 TTGACTTAGT
*
17446268 CATACGGAGTTCATTCCTAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
17446294 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
17446320 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:17447131 original size:26 final size:26
Alignment explanation
Indices: 17447095--17447147 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17447085 GTTGACTTAG
17447095 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17447121 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17447147 G
1 G
17447148 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17448917 original size:26 final size:26
Alignment explanation
Indices: 17448887--17448936 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
17448877 GACTTAGGCG
*
17448887 TACGGAGTTCATTCCCAGTTTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
17448913 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
17448937 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:17449314 original size:901 final size:899
Alignment explanation
Indices: 17446587--17452533 Score: 7814
Period size: 897 Copynumber: 6.6 Consensus size: 899
17446577 CATACGGAGA
* * **
17446587 TTTTAGCTGAATTTTTTTATGCACGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGCAC
1 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * * ** *
17446652 CAAAACTTCTTTCGAAAAAATTTTAAAAAAT-TCAGAATCGTAAAAAGTTTTGAAAATCCTGAAA
66 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCTC-GAACCGCAAAAAGTTTCAAAAATCATGAAA
* * * *
17446716 AATAAAAAACGA-TACGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGATCGTTGTAGGAAT
130 AATAGAAAACGAGT-CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* * ** ** * *
17446780 TCACAAACCATAAAAATATCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTGCCAC
194 TTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCAC
* *
17446845 CCTATCGATCCATGACTTGCGCATCCCGTCTCTCTGGCCGACGCTAGTGCCCGTCCGCCCGCCCG
259 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACG-TAGTG--C--CCGCCCGCCCG
* * ** *
17446910 CCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATC-GAA
319 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-A
* ** * * ** * * * *
17446974 CCAAGGGGTGCGACAACAGGATTGACAGCACGTAGAGTGGGACCC-AGTCGATCCCTGGCTTGTG
383 CCAAGGGTTGCGGTAGCAGGATCGGTAGCACGCAGAGGGGGACCCGA-TCGATCCCCGGCTTGCG
** **
17447038 CATCCAACCCCTC-TGGCCGATTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
447 CATCCCGCCCCTCTTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* *
17447102 GAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGT
512 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
*
17447167 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCAGGGCACCATC
577 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG-CAGGGCACCATC
* * * *
17447232 GTCGGAGCGTCGCCAGAGAACCTGACCGGCGGCATTGGGGTTCCGACGAT--------CGAGGGG
641 GTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGG
** * *
17447289 GTGTGCATACATGATGTGCGATGGGTGCTGGTACTTGGCCTTTATATTTGCCCCCTATCCCTCAT
706 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
*
17447354 CAAACCTCGAGAACTCACACCACCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
771 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* *
17447419 CATTAAAGTGTCTGAAATGGGGGACACTTTTTTCAAATGGTCACATAATCTTGTACACTTCGAGT
836 CATTAAAGTGTCTAAAAT-GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * *
17447484 TTTTAGCTGAATTTTTTTGTACATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTTGGGC
1 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* *
17447549 CAAAACTCCTTCCAAAAAAATTTTAAAAAATCTAGAACCGCAAAAAGTTTCAAAAATCATGAAAA
66 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAA
* *
17447614 ATAGAGAAA-GAGTCGTTTTGCCAGGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
131 ATAGA-AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
*
17447678 TACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTGCCACC
195 TACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * *
17447743 CTATCAATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTAGT----GCCCGCCCGCTCACT
260 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCT
* *
17447804 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTGCCAGTCTAAGATCAGACC-GAACTAAGG
325 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCAAGG
* * * * *
17447868 GTTGTGGTAGCAGGATCGGTAGCACGCAGAGTGTGACCCGA-CTGATCCTCGACTTGCGCATCCC
389 GTTGCGGTAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATC-GATCCCCGGCTTGCGCATCCC
* * * ** * * *
17447932 GCCCCTC-TAGCCGGCTGAGCGCCTGTATTCTCGTTTGGTGGGTTGACTTAGGCAAACAGAGTTC
453 GCCCCTCTTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
** *
17447996 ATTCCCAGTCTAAGCATACATAGTTCATTCCCAGTCTAAGGTCGGACCGGACCGAGGGTTGCGGC
518 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGC
* * * * * * *
17448061 AGCACATGCTGGGCTCAGACATGTGCTGGTGCCACATTCTTCTTCACCGGGGCACCATC-ACTGG
583 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-GCAGGGCACCATCGTC-GG
* * *
17448125 TGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGT
646 AGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGT
* * * *
17448189 GCGCACATGATGTGCTATAGGTGCTGGTACGTGCCCCTTATATTGGCCCCCTATCCCTCATCAAA
710 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* * *
17448254 CCTTGAGAACTCACACCCACTTAAAGAGGATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAAT
775 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC-AT
* * *
17448319 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATCGTCACAAAATCTTGTACACTTCGATT
839 TAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* *
17448380 TTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTAGGGC
1 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * *
17448445 CAAAAATCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAACTTTCAAAAATCATAAAAA
66 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAA
*
17448510 ATAGAGAACGAGTCGTCTTTG-CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
131 ATAGAAAACGAGTCGTC-TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* *
17448574 TACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCCACCACC
195 TACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * * *
17448639 CTATCGATCCATGGCTTGCGCATCTCGTCTCTATGGCCGACGTAGTGCCCACCCGCCCGTCCGCT
260 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCT
* * *
17448704 CGTTCCGTCAGTTGGCTTAGGCATACAAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGG
325 CGTTTCGTCGGTTGGCTTAGGCATAC-GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGG
* * * ** * * * * **
17448769 ATTGCAGCAGCACAATCGGCAACATGCAGAGGGGGACCCGATCGATCCCCAGCTTGCATATCCCG
389 GTTGCGGTAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCG
* * * *
17448834 CCCCTCTAGG-CGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCGTACGGAGTTCA
454 CCCCTCTTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* *
17448898 TTCCCAGTTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCA
519 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCA
* * * * ** *
17448963 GTAAATGTTGGGCTCGGGCTTGTGCTGGTGCCAAATTTTTCTTCGCAAGGGCACCATCGTTGGAG
584 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGC-AGGGCACCATCGTCGGAG
* ** *
17449028 CATCGTCGGAGAACCTGACCGACGATATTGGGGTTCCGACGATCGGGGGGTCGGGGGGGTGTGCG
648 CATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCG
* * *
17449093 CCCATGATGTGTGATGGGTGCTAGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCT
713 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* *
17449157 C-AGGAACTCACACCCCCTTAAAGAGCATCTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAA
778 CGA-GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
17449221 AGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
842 AGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * *
17449279 TTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAAATACAAGGGTCACATCTACCAAGTTTGGG
1 TTTTAGCTGAATTTTTTTGTGCATGCC--AACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * * *
17449344 GCCAAAAATCCTTCCGAGAAAATTTAAAAAAATAC-C-AAGCGGCAAAAAGTTTCAAAAATCGTG
64 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT-CTCGAA-CCGCAAAAAGTTTCAAAAATCATG
*
17449407 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTAACGTGAAGGCTTAAGGGACCATTGTATGA
127 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * **
17449472 ATTTGCAAGCCATAAAAAAGGCATTGGCAGGCAAAAATATGAAGATGTGCCTAAACCCACCTACC
192 ATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACC
* * *
17449537 ACCCAATCGATCAACGGCTTGCGGATCCCGTCTCAT-TGGCCGACGTAGTGCCCGCCTGCCCGCC
257 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTC-TCTGGCCGACGTAGTG--C-CC-GCCCGCC
* * * ** * ** **
17449601 CGCCCGCTTGTTTCATCGGTTAGAGTAGGTATACGGAGTTCATTCCCAGTCTAAGATTGGATTAG
317 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* * * * * * *
17449666 ACCTAGGGTTGCAGTAGTAGGATCAGTAGCACGCAGAGGGGGACCC-AGCCGATCCTCGGCTGGC
382 ACCAAGGGTTGCGGTAGCAGGATCGGTAGCACGCAGAGGGGGACCCGA-TCGATCCCCGGCTTGC
* * * *
17449730 GCATCCCGCCCGT-TTGGCCGGCTGAGCGCCCGTACGCTCGTTTCATGGGTTAACTTAGGCATAC
446 GCATCCCGCCCCTCTTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * ** *
17449794 GGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCTAGTCTAAGATCGGAATGGACTGAGGG
511 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGG
* * * *
17449859 TTGCGGCAGCACTTGTTGGGCTCGGGCATGTGCTGGTGCCGCATTTCTCTTCGCCGAGGCACCAT
576 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCAG-GGCACCAT
* * * * **
17449924 CGCCAGAGCATTGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGTGATCGGGGGGGCC-GGG
640 CGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGG
*
17449988 GGGTGTG-GCACATCATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
704 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * *
17450052 ATCAAACCTCGAGAACTCACACCTCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGCTAGTA
769 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* *
17450117 GCCATTAAAGTGTCTAGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAATTCGAG
834 GCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
17450182 T
899 T
* * *
17450183 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAATGATCACATCTACAAAGTTTGGGGC
1 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * *
17450248 TAAAACTCCATCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAA
66 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAA
* * * *
17450313 ATAAAAAACGAGTCGTGTTGCCAGGAAACTTCAGGTGAAGGCTTAAGGGACCATTGTATGAATTT
131 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * *
17450378 ACAAGCCATAAAAATGGCATTGGCACACAGATATATGAAGGTGTGCCTAAACCCACCTACCACCC
196 ACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* *
17450443 TATCAATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCCCGCCC
261 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG----CCCGCCCGCCC
* *
17450508 GCTCGTTTCGTCGGTTGGCTTTGGCATACGGAGTTCATTCCCAGTCTATGATCAGACCAGACCAA
322 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAA
* ** * * ** **
17450573 GAGTTGCGACAGCAGGATCAGTAGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGATCATCC
387 GGGTTGCGGTAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCC
** * *
17450638 CGCCCCTC-TGGCCAACTAAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGCCATTCGGAGTT
452 CGCCCCTCTTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT----A----G-G--
*
17450702 CATTCCCAGTCTAAGCATACGAAGTTCATTTCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
506 CA-T---A--C---G-----G-AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * * **
17450767 AGATCGGATCGGATCGAGGGTTACGGCAGCACATGCTGGGCAT-GCCCATGTGCTGGTGCCGCAT
556 AGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGC-TCGGGCATGTGCTGGTGCCGCAT
* * * * *
17450831 TTTTGTTTGCCCGGGCACCA---TC---G--T---CGGAGAACCTGACCGGCGACATTGGGGTTC
620 TTTTCTTCG-CAGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTC
** * *
17450885 CGGTGATCGAGGGGCCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTG-TGGGTAGTTGGCCC
684 CGACGATCG-GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT-GGTACTTGGCCC
*
17450949 TTATATTAGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
747 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* * **
17451014 TTTTACAAGCTTGCTGCCAGTATTCATTAAAGTGTCTAAAATGGGGGACACTTTTTTCAAATGGT
812 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT-GGGGACACTTTTTTCAAATGGT
* *
17451079 CACAAAATCTTGTACACTTTGAGC
876 CACAAAATCTTGTACACTTCGAGT
* * *
17451103 TCTTAGCTGAATTTTTTTGTGCATGACAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGC
1 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * *
17451168 CAAAACGT-CTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAA
66 CAAAAC-TCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAA
*
17451232 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATT
130 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
*
17451297 TACAAGCCATAAAAATGGCATTGGCATACAAAAATATGAAGATGTGCCTAAACCCACCTACCACC
195 TACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * *
17451362 CTATCGATCCACTGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCGCCCGCCTGCT
260 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCT
* * **
17451423 CGTTTGGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGG
325 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGG
*
17451488 TTGCGGTAGCAGGATCGATAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGC
390 TTGCGGTAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGC
* * * * *
17451553 CCCT-TTGGCCAGCTAAGCGCCTGCACGCTCGTTTCGTGGCTTGACTTTGGCATACGGAGTTCAT
455 CCCTCTTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * *
17451617 TCCTAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTGGCGGCAG
520 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAG
** * * *
17451682 CACATGCTGGGCTCGACCATTTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGC
585 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG-CAGGGCACCATCGTCGGAGC
* *
17451747 ATCGCCGGAGAACTTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGGTGTGCG
649 ATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCG
*
17451812 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATACTGGCCCCCTATCCCTCATCAAACCT
713 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* *
17451877 TGGGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
778 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
*
17451942 GTTTCTGAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
843 GTGTCT-AAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * *
17452000 TTTTAGCTGAATATTTTTT-TACATGCCAACAAAAATACAAGGATCATGTCTACCAAGTATGGGG
1 TTTTAGCTGAAT-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * * *
17452064 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCGCAGAAAGTTTTAAAAATCGTGAAA
65 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAA
* * *
17452129 AATAGAAAACGAGTCGTCTTCCCATGAAACTGCACGTGAAGCCTTAAGGGACCATTGTATGAATT
130 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
***
17452194 TACAAGCCATAAAAATGGCATTGGCATGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACC
195 TACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACC
* *
17452259 CTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCC
260 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT----GCCCGCCCGCCCGCC
* * **
17452324 CGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCTGACTG
321 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCA
* * * *
17452389 AGGGTTGCGGTAGCAGGATCGATAGCACGCAGAGAGGGACCCGATCGATCCTCGGCTTGCGTATC
386 AGGGTTGCGGTAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATC
* *
17452454 CCGCCCCT-TTGGCCGG-TAGAGCGCCCGCACGCTCGTTTCGTGGCTTGACTTTGGCATACGGAG
451 CCGCCCCTCTTGGCCGGCT-GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
17452517 TTCATTCCCAGTCTAAG
515 TTCATTCCCAGTCTAAG
17452534 ATCGGATCAG
Statistics
Matches: 4441, Mismatches: 492, Indels: 226
0.86 0.10 0.04
Matches are distributed among these distances:
885 1 0.00
886 111 0.02
887 3 0.00
888 320 0.07
889 3 0.00
892 2 0.00
894 1 0.00
895 3 0.00
896 451 0.10
897 781 0.18
898 19 0.00
899 90 0.02
900 123 0.03
901 576 0.13
902 405 0.09
903 49 0.01
904 456 0.10
905 246 0.06
906 1 0.00
910 1 0.00
911 1 0.00
912 169 0.04
913 2 0.00
914 1 0.00
916 2 0.00
917 44 0.01
918 11 0.00
919 130 0.03
920 324 0.07
921 1 0.00
922 2 0.00
925 1 0.00
927 1 0.00
928 106 0.02
929 4 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
CAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAA
ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
ACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCC
TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTC
GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGT
TGCGGTAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCC
CCTCTTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGC
ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCAGGGCACCATCGTCGGAGCAT
CGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCAC
ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
TCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
Found at i:17449818 original size:26 final size:26
Alignment explanation
Indices: 17449788--17449840 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17449778 GTTAACTTAG
17449788 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
17449814 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17449840 G
1 G
17449841 ATCGGAATGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17450736 original size:26 final size:26
Alignment explanation
Indices: 17450698--17450768 Score: 124
Period size: 26 Copynumber: 2.7 Consensus size: 26
17450688 AGCCATTCGG
17450698 AGTTCATTCCCAGTCTAAGCATACGA
1 AGTTCATTCCCAGTCTAAGCATACGA
* *
17450724 AGTTCATTTCCAGTCTAAGCATACGG
1 AGTTCATTCCCAGTCTAAGCATACGA
17450750 AGTTCATTCCCAGTCTAAG
1 AGTTCATTCCCAGTCTAAG
17450769 ATCGGATCGG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
AGTTCATTCCCAGTCTAAGCATACGA
Found at i:17451639 original size:26 final size:26
Alignment explanation
Indices: 17451602--17451654 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17451592 CTTGACTTTG
* *
17451602 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17451628 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17451654 G
1 G
17451655 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17455002 original size:26 final size:26
Alignment explanation
Indices: 17454965--17455017 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17454955 GTTGACTTAG
*
17454965 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
17454991 GCATACGAAGTTCATTGCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17455017 G
1 G
17455018 ATTTAACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17455882 original size:26 final size:26
Alignment explanation
Indices: 17455852--17455904 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17455842 GTTGACTTAG
*
17455852 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAATCTAA
17455878 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
17455904 G
1 G
17455905 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:17456332 original size:887 final size:889
Alignment explanation
Indices: 17452684--17461200 Score: 9189
Period size: 899 Copynumber: 9.6 Consensus size: 889
17452674 CCCCGGGGGG
* * * * * * *
17452684 TGTACACTTCAAGTTTTTGGTTGAGTTTTTTTGTGAATGCCAATAAAAATACAAGGATCAAGTCT
1 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCT
** * *
17452749 ACCAAGTTTGGGGAAAAAACTCCTTCCGAAAAAATTTAAAAAAAT-CTCGAACCGTAAAAAGTTT
66 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCT-GAACCGCAAAAAGTTT
**
17452813 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGGGATGAAACTTCACGTGAAGGCTTAAGGGA
130 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* *
17452878 CCATTGTATGAATTTGCAAGCCATAAAAATGGCATTGGCATGCAGGAATATGAAGATGTGCCTAA
195 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
** * *
17452943 ACCCACCTACCACAATATCGATCCACGGCTTGCGCATCCCGTCTCTCAGGACGGCGTAGTGCCTG
260 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCT-
* * * *
17453008 CCCGCTCGTTTCGACGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGGTCAGACTAGAC
324 -CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
* * * * * * * * **
17453073 TGAGGGTTGTGACAGTAAGATCGGCAGCAAGCAAAGGGCGACCCGACCGATCCTCGGCTTGTACA
388 TGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCA
* * * * *
17453138 T-CC-CCCCTCTGGTCGGTTGAGCGCCCGTACGCTCATTTCGTTGGTTGACTTAGGCACACGGAG
453 TCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAG
* * * * * *
17453201 GTCATTCCTAGTCTAAGCATACGAAGTTCATTCCCAGTTTAAGATCGAACCAGACCGAGGGTGGC
518 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGC
* *
17453266 GGCAGCACATGCTGGGCTCGGCCATGTGCTGGTGCTGCATTTTTCTTCGCCGGGGCACCATCGCC
583 -GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCC
*
17453331 GGAGCATCGCCGGAGAACTTGTA-CGACGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGG
647 GGAGCATCGCCGGAGAACCTG-ACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGG
*
17453394 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATACTGGCCCCCTATCCCTCATC
711 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * *
17453459 AAACCTTGGGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCC
776 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
*
17453524 ATTAAAGTTTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
841 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
*
17453573 TGTACACTTCGAGTTTTTAGCTGAATATTTTTT-TGCATGCCAACAAAAATAAAAGGATCATGTC
1 TGTACACTTCGAGTTTTTAGCTGAAT-TTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTC
* * * *
17453637 TACCAAGTATGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTTGAACCGCAGAAAGTTT
65 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTT
* * * *
17453702 TAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTGCACGTGAAGCCTTAAGGGA
130 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* * *
17453767 CCAATGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAAAAATATGAAGATGTGCCTAA
195 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
*
17453832 ACCCACC-ACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCG
260 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT-----
** *
17453896 CCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTACACATACGGAGTTCATTCCTAGTCTAAG
320 ---GCCT------CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * * *
17453961 ATCAAACCTGACTGAGGGTTACGGTAGCAGGATCGACAGAACGCAGAGGGGGACCCGATCGATCC
376 ATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCC
* * *
17454026 CCGCCTTGCGCATCCCGCCCCTTTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT--G--G-CTT
441 CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTT
*
17454086 --G---AC-----T--TT----G-----GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAG
506 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG
* * *
17454130 ACCGAGGGTTGCG-ATCGCACATGCTAGGCTCGGGCATGTGCTGGTGTCGTATTTTTCTTCGCCG
571 ACCGAGGGTTGCGCA--GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCG
* * * * * * *
17454194 AGGTACCATCGTCGGAGCATCGTCGGAGAACCGGACCGGA-GGCATTGAGGTTTCGGCGATC-GG
634 GGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACC-GACGGCATTGGGGTTCCGGCGATCGGG
* *
17454257 GGGGCCCGGGGGGTGTGCGCACCTGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
698 GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* *
17454322 CCTATCCCTCATCAAACCTCGAGAACTCACATCCTCTTAAAGAGCATTTGAGATTTTACAGGTTT
763 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * * *
17454387 GCTACCAATTGCCATTAAAGTGTCTGAAATGGGGACACTATTTTCAAATGGTCACAAAATCT
828 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* *
17454449 TGTACACTTGGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCTTGTCT
1 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCT
* * * * *
17454514 ACCAAGTTTGGGGCCAGAACTCCTTCCGACAAAAGTTTAAAAAATCCTGAACCG-TAAAAGTTTA
66 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTC
* * *
17454578 AAAAATCATTAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTGCACGTGAAGGCTTAAGGGAC
131 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* * * *
17454643 CATTGTACGAATATACAAGCCATAAAAATGGCATTGGCGTGCAGAAATTTGAAGATGTGCCTAAA
196 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
* * * *
17454708 CCCACCTATCACCCTATTGATTCACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCTAC
261 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA--G--T--
*
17454773 CCGCCCGTCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
320 --G-CC-TCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* ** * * *
17454838 ACCAGACTGAGGGTTACGATAGCAGGATTGGTAGCACGCAGAGGGGGACCCGACTGATCCCCGGC
381 ACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGC
* * * * * **
17454903 TTGCGCATCCCGCCCATTTGGCCGGTTGAGCCCCCGCACACTTGTTTCGTGGGTTGACTTAGGCA
446 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCA
* * *** *
17454968 TACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTGCCAGTCTAAGATTTAACTAGACCGA
511 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGA
* *
17455033 GGGTTGCGACAGCACATGCTAGGG-TCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCA
576 GGGTTGCG-CAGCACATGCT-GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCA
* * * **
17455097 CCATCACCGGAGCATCGCCGTAGAACCTGACCGGA-GGCATTGGGGTTTCGATGATC-GGGGGGC
639 CCATCGCCGGAGCATCGCCGGAGAACCTGACC-GACGGCATTGGGGTTCCGGCGATCGGGGGGGC
*
17455160 CGGGGGGTGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
703 CGGGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
17455225 TCCCTCATCAAACCTCGAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTA
767 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
17455290 CCAATTGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
832 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* * *
17455348 TGTACACTTGGAGTTTTTAGCTGAATATTTTTCTGCATGCCAACAAAAATACAAGGATCATGTCT
1 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCT
* * * *
17455413 ACCAAGTATGGGG-CGAAACTCCTTCTGAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTC
66 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTC
* *
17455477 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTGCACGTGAAGGCATAAGGGAC
131 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
**
17455542 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAA
196 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
* * * *
17455607 CCCACCTACCACCTTATCGATCCACGGCTTTCGCATCCTGTCTTTCTGGCCGGCGTAGTG-CT-C
261 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTCC
* ** **
17455670 GCTCGTTTTGTCATTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGA
326 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGA
* * * * * * * *
17455735 GGGTTGTGGCAGCAAGATCAGTAGCATGCAGAGGGGGACCCGACCAATCCTCGACTTGCGCATCC
391 GGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCC
* * ** * * *
17455800 TGCCCCTTTGGCTAGTTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTC
456 CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTC
* *
17455865 ATTCCCAGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATCGGACC-GATCCGAGGGTTGCAG
521 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA-CCGAGGGTTGC-G
* * * * * * *
17455929 CAGCATATGCTGGGCTCGGGCATGTGCTGGTGTCGTATTTTTCTTCGTCGGGGCACAATCACCAG
584 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGG
* * * * * *
17455994 AGCATCGTCGGAGAACCTGACTGGCGGCATTGGGGATT-AGGCGATTGGGGGGGCC-GGTGGGTG
649 AGCATCGCCGGAGAACCTGACCGACGGCATTGGGG-TTCCGGCGATCGGGGGGGCCGGGGGGGTG
* *
17456057 TGCGCATAGGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
713 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
*
17456122 ACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
778 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* * *
17456187 TAAAGTGTCTGAAATGGGGGCACTTTCTTCAAATGGTCACATAATCT
843 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* *
17456234 TGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCCAA-AAAAATACAAGGATCACGTC
1 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG-CCAACAAAAATACAAGGATCATGTC
* *
17456298 TACCAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTAAAAAAT-CTCGAATCGCAAAAAGTT
65 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCT-GAACCGCAAAAAGTT
* * *
17456362 TCAAAAATTATGAAAAATAAAAAACGAGTCGTCTTGCCACGAAACTTCACGTGAAGGCTTAAGGG
129 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
*
17456427 ACCATTGTATGAATTTACAAGCCATAAAAATGACATTGGCATGCAGAAATATGAAGATGTGCCTA
194 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
* * *
17456492 AACCCACCTACCACCCTATCGATCCAAGGCTTGCGCACCCCGTTTCTCTGGCCGGCGTAGTGCCC
259 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----
* * * * *
17456557 GCCCGCCCGTCCGCTTGTTTCGTCGGATGGCTTAGACATACGTAGTTCATTCCCAGTCTAAGATT
320 ----G-CC-TCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * * *
17456622 GGATCAGA-TCGAGGGATGTGGTAGCAGGATCGGCAGCACACAGAGGGGGACCCGACCAATCCCC
379 AGACCAGACT-GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCC
* *
17456686 GGCTTGCGCATCCCGCCCCTTTGGCCAGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAG
443 GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAG
* *
17456751 GCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
508 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
* * * * *
17456816 CGAGGGTTACGGCAGCACATGCTGGGTTCGAGCATGTGCTGGTACC-CTATTTTTCTTCACCGGG
573 CGAGGGTTGC-GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC-ATTTTTCTTCGCCGGG
* *
17456880 GCACCATCACC-GA--A-------A-AACCTGACCGACGGCATTGGGGTTCCGGCGATCGAGGGG
636 GCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGG
*
17456934 GCCAGTGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
701 GCC-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* * * *
17456999 TATCCCTCTTCAAACCTTGAGAACTCACACCCCCTTGAAGAGCATTTGAGATTTTACAAGTTTGC
765 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
*
17457064 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCT
830 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* * * * **
17457124 TGTACACATT-GAGTTTTTACCTGAATTTTTTTATGCATACCAAAAAAAATACAAGGATCACATC
1 TGTACAC-TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTC
* * * * * *
17457188 TACCAAGTTTGTGGCCAAAACACCTTCCAAAAAAATTTTAAAAAATCCCGAACCACTAAAAGTTT
65 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTT
** * * * * *
17457253 TGAAAATCTTGAAAAATAGAAAACGAGTTGTCATGCCACGAAACTTCACGTGAAGGCTTAAAGGA
130 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* **
17457318 CCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAA
195 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
* * *
17457383 ACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGTCGGCATAGTGCCCG
260 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT-----
* * *
17457448 CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCTCAGTCTAAG
320 -------G-CC-TCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
** * * * * * *
17457513 ATTGGACCAGACTGACGGTTACGGCAGCATGATCGGCAACACACAGAGGGGGACCCGGCCGATCC
376 ATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCC
* * * * * *
17457578 CCGACTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCGCCCGCACGCCCGTTTCATTGGTTGACTT
441 CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTT
** * *
17457643 AGGTGTACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
506 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG
* *
17457708 ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTGCTTCGCCGA
571 ACCGAGGGTTGC-GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGG
* * * *
17457773 GGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGATGGTATTAGGGTTCCGGCAATC-GGGG
635 GGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGG
**
17457837 GGCCTGGGGGGGTGTAAGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
700 GGCC-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* * * *
17457902 CTATGCCTCATCAAACCTCGAGAACTCACATCCCCTTAAAAAGCCTTTGAGATTTTACAGGTTTG
764 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* *
17457967 TTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
829 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
*
17458028 TGTACACTTGGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCT
1 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCT
* * * * *
17458093 ACTGAAGTTTGGGGCCAAAATTCCTTCCAAAAAAATTTTAGAAAATCCCGAACCGCAAAAAGTTT
66 AC-CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTT
* * *
17458158 CAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAGCTTCACGTGAAGGCTTAGGGGA
130 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* *
17458223 CCATTGTATGAATTTACAAGCCCTAAAAATGGCATTGGCATGCAGAAATATGATGATGTGCCTAA
195 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
*
17458288 ACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCT
260 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CCT
* *
17458353 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCTAGTCTAAGATCAGACC
324 -----CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * * * *
17458418 AGAGC-AAGGGTTGCGGTAGCAAGATCGGCAGCACGCAGAGGGGGACCCGGCCAATCCCCGTCTT
384 AGA-CTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTT
* * * **
17458482 GCGCATCCTGCCCCTCTGGCCGGCTGAGCGACCACACGCTCATTTCGTTAGTTGACTTAGGCATA
448 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATA
* **
17458547 CGGCGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTTGTCTAAGATCGGACC-GACCGAGG
513 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGG
* * *
17458611 GTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGAGGCACCA
578 GTTGCG-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCA
* * * ** * * *
17458676 TTGCCAGAGCGTC-CCAGGAGAACCTGACCGACAACATTGGGGTTTCGGCGATCGGTGGGACCGG
642 TCGCCGGAGCATCGCC-GGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGG
* * * *
17458740 GTGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCTCTTATATTGGTCCCCTATCCC
706 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* * *
17458805 TCATCAAACCTCGAGAACTCACACACCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCTAG
771 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* * *
17458870 TAGCCATTAAAGTGTCTGAAATGGAGACA-TCTTTTTCAAATGATCACAAATTCT
836 TAGCCATTAAAGTGTCTGAAATGGGGACACT-TTTTTCAAATGGTCACAAAATCT
* * * * *
17458924 TATACACTTTGAGTTTTCAGCTGAATTTTTTTGTGCATGCCGAA-AAAAATACAAGGATTACGTC
1 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AACAAAAATACAAGGATCATGTC
* * *
17458988 TACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTT
65 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTT
** * * * *
17459053 TGAAAATCATGAAAAATAGAAAAGGAGTCATTTTGCCGTGAAACTTCACGTGAAGGCTTAAGGGA
130 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* *
17459118 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACTTAA
195 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
* *
17459183 ACCCACCTACCACCCTATCGATCCATGGCTTGCACATCCCGTCTCTCTGGCCGGCGTAGTGCCCG
260 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----G
* * * * *
17459248 CCCGTCTGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTTTACGATCGGACC
321 -CC-TCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * ** * *
17459313 AAACCGAGGGTTGCGGCAGTAGGATCGATAGCACGTAGAGGGGGACCCGACCGATCCCTGGCTTG
384 AGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTG
* * * * *
17459378 CGCATCCTGGCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC
449 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATAC
* * *
17459443 GGAGTTCATTCCTAGCCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGG
514 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGG
* *
17459508 TTGCGACAGCACATCCTGGGCAT-GGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCA
579 TTGCG-CAGCACATGCTGGGC-TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCA
* * * *
17459572 TCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCAGG
642 TCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GG
** *
17459636 GGGTATGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
706 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
** * * * *
17459701 TCATCAAACCTCGAGAACT-A-A--CAATTGAAATGGGGACACTT----TTTT-CA--ATTGGT-
771 TCATCAAACCTCGAGAACTCACACCCCCTT-AAA--GAG-CATTTGAGATTTTACAGGTTTGCTG
* ** * ** *** ** * ***
17459754 CACA-AAATCTTGTACACTTCGATCTTTTA-GCTGA-ATTTTTTTGTTCAT-GTCAACAAAA---
832 C-CAGTAGCCAT-TA-AAGT-G-TCTGAAATGGGGACACTTTTTT-CAAATGGTC-ACAAAATCT
* * * * * * *
17459812 -ATACAAGTATC-ACG--TCTACCT--A---TTTTG-G---GGC--C-AAAAT-------TCCTT
1 TGTAC-ACT-TCGA-GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATG
* ** * ** ** ** * * * **
17459854 TCGAAAAAATTT-TAG--AAAA-TCCCGAACCGTCAAAAGTTTCAAAAATCGTGAAAAATAG-AA
63 TCTACCAAGTTTGGGGCCAAAACT-CC-TTCCGAAAAAATTTTAAAAAATCCTG---AACCGCAA
** * * ** * ** * ** * *
17459914 AACGAGTTGTC--TTACCATG-AAACT---TCACGTGAAGGCTT-AAAGGACCAA-TGCA--TGA
123 AA--AGTT-TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA--AACTTCACGTGA
* * *** * ** * * **
17459969 A--TTTACA-AG-CCATAAAAATGGCATTGGCACG-TA-AAAATATGAAG-A-T-G--TGCCTAA
183 AGGCTTA-AGGGACCAT-TGTAT-GAATTTACAAGCCATAAAA-ATG--GCATTGGCATGCAGAA
*** ** **** * * * * ** *
17460023 A-CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCTC
242 ATATGA-AGATGTGCCTA--AACCCAC--C-TAC-CA-CCC-TATCGAT--CC-AC---G-GCTT
** * ** * * * * * * * * *
17460087 GC-CCGCCCGCTCGTTTCGTGGGTTGGCTTAG-GCATACAG--AG-TTCATTC-CTAGTC-TAAG
291 GCGCATCCCG-TC-TCTC-T-GGCCGGCGTAGTGCCT-CCGCTCGTTTC-GTCGGTTGGCTTAGG
* ** * ** * * * *
17460145 -AT-C--AGATCAGACCAAGGGT--TA-C-GGCC--AC--A-GGAT-C--TA-C---------AG
350 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAG
* * * * ** *
17460184 CACGCAGAGAGGGACCCGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGTCAACTGAGCACC
415 CACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* * * *
17460249 CGCACGCTCGTTTCGTGGGTTGATTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATATGGAGT
480 CGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* * * * *
17460314 TCATTGCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAACACATGCTAGGCTCGGGCATGT
545 TCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGC-GCAGCACATGCTGGGCTCGGGCATGT
* * * * * * * *
17460379 GCTGGTGCTGCATTTTTCCTCACCGAGGCACCATCGTCGGACCATCGCCAGAGAACCTGATCGAC
609 GCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGAC
* * *
17460444 GGCATTGAGG-ACCGGCGATCGGGAGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
674 GGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * * *
17460508 GGTTCTTGGCCCTTATAGTGG-CCCCTATCCCTCATTAAACCTCTAGAACTCACACCCCCTTAAA
739 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * * * *
17460572 GAGCATCTGAGATTTTATAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTGAAATTGGGTCACTTT
804 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
17460637 TTTCAAATGGTCACAAAATCT
869 TTTCAAATGGTCACAAAATCT
** * *
17460658 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTACGCATGCCAACAAAAAGACAAGGATCACGTCT
1 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCT
* * * *
17460723 ACCGAGTTTTGGGCCAAAACTCCATCCGAAAAAATTTTAAAAAAACCTGAACCGCAAAAAGTTTC
66 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTC
**
17460788 AAAAATGGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
131 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
*
17460853 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAA
196 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
* * * *
17460918 TCCACCTACC-CCTTATTGATCCACGGCTTGCGCATCCAGTCTCTCTGGCCGGCGTAGTGCCCGC
261 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----G-
* * *
17460982 CCGTCCGTCCACTCCTTTCGTCGGTTGGCTTAGGTATACGGAGTTCATTCCCAGTTTAAGATCAG
321 CC-TCCG----CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * * * * *
17461047 ATCGGA-TGGAGGGTTGCAGCA-CTAGGATCGACAGCACGCAGAGCGGGACCCGGCCGATCCCCG
381 ACCAGACT-GAGGGTTGCGGCAGC-AGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCG
* * * * * * *
17461110 GCTTACACTTCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATCGGTTGACTTAGG
444 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGG
17461175 CATACGGAGTTCATTCCCAGTCTAAG
509 CATACGGAGTTCATTCCCAGTCTAAG
17461201 ATTGGATCGG
Statistics
Matches: 6428, Mismatches: 900, Indels: 592
0.81 0.11 0.07
Matches are distributed among these distances:
838 30 0.00
839 63 0.01
840 244 0.04
841 4 0.00
842 11 0.00
843 11 0.00
844 12 0.00
845 11 0.00
846 7 0.00
847 8 0.00
849 1 0.00
850 1 0.00
852 5 0.00
853 4 0.00
854 1 0.00
856 4 0.00
857 9 0.00
858 15 0.00
859 8 0.00
860 22 0.00
861 16 0.00
862 21 0.00
863 12 0.00
864 13 0.00
865 27 0.00
866 43 0.01
867 11 0.00
868 45 0.01
869 28 0.00
870 18 0.00
871 12 0.00
872 171 0.03
873 19 0.00
874 20 0.00
875 164 0.03
876 479 0.07
877 9 0.00
878 5 0.00
879 3 0.00
880 1 0.00
881 3 0.00
882 7 0.00
883 1 0.00
884 3 0.00
885 4 0.00
886 244 0.04
887 548 0.09
888 100 0.02
889 247 0.04
890 471 0.07
891 17 0.00
892 13 0.00
893 8 0.00
894 297 0.05
895 466 0.07
896 528 0.08
897 337 0.05
898 187 0.03
899 717 0.11
900 112 0.02
901 2 0.00
902 33 0.01
903 2 0.00
904 238 0.04
905 255 0.04
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (889 bp):
TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCT
ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTC
AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTCC
GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGA
GGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCC
CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTC
ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGCA
GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAG
CATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGC
GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
Found at i:17456787 original size:26 final size:26
Alignment explanation
Indices: 17456751--17456803 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17456741 GTTGACTTAG
17456751 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
17456777 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17456803 G
1 G
17456804 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17457679 original size:26 final size:26
Alignment explanation
Indices: 17457648--17457697 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
17457638 GACTTAGGTG
17457648 TACGGAGTTCATTCCCAATCTAAGCA
1 TACGGAGTTCATTCCCAATCTAAGCA
*
17457674 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAATCTAAG
17457698 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAATCTAAGCA
Found at i:17458571 original size:26 final size:26
Alignment explanation
Indices: 17458542--17458594 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17458532 GTTGACTTAG
*
17458542 GCATACGGCGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
**
17458568 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17458594 G
1 G
17458595 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17458932 original size:896 final size:892
Alignment explanation
Indices: 17452684--17459719 Score: 9367
Period size: 899 Copynumber: 7.9 Consensus size: 892
17452674 CCCCGGGGGG
* * * * * * *
17452684 TGTACACTTCAAGTTTTTGGTTGAGTTTTTTTGTGAATGCCAATAAAAATACAAGGATCAAGTCT
1 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCT
** * * *
17452749 ACCAAGTTTGGGGAAAAAACTCCTTCCGAAAAAATTTAAAAAAATCTCGAACCGTAAAAAGTTTC
66 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTC
**
17452814 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGGGATGAAACTTCACGTGAAGGCTTAAGGGAC
131 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* *
17452879 CATTGTATGAATTTGCAAGCCATAAAAATGGCATTGGCATGCAGGAATATGAAGATGTGCCTAAA
196 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
** * *
17452944 CCCACCTACCACAATATCGATCCACGGCTTGCGCATCCCGTCTCTCAGGACGGCGTAGTG-CCT-
261 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCTC
* * * *
17453007 --GCCCGCTCGTTTCGACGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGGTCAGACTA
326 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* * * * * * * * *
17453070 GACTGAGGGTTGTGACAGTAAGATCGGCAGCAAGCAAAGGGCGACCCGACCGATCCTCGGCTTGT
391 GACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGC
* * * * * *
17453135 ACAT-CC-CCCCTCTGGTCGGTTGAGCGCCCGTACGCTCATTTCGTTGGTTGACTTAGGCACACG
456 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACG
* * * * *
17453198 GAGGTCATTCCTAGTCTAAGCATACGAAGTTCATTCCCAGTTTAAGATCGAACCAGACCGAGGGT
521 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGT
* * * *
17453263 GGCGGCAGCACATGCTGGGCTCGGCCATGTGCTGGTGCTGCATTTTTCTTCGCCGGGGCACCATC
586 TGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATC
*
17453328 GCCGGAGCATCGCCGGAGAACTTGTA-CGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGG
651 GCCGGAGCATCGCCGGAGAACCTG-ACCGACGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGG
*
17453392 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATACTGGCCCCCTATCCCTCA
714 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* * *
17453457 TCAAACCTTGGGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAG
779 TCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
*
17453522 CCATTAAAGTTTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
843 CCATTAAAGTGTCTGAAATGGGGACAC-TTTTTCAAATGGTCACAAAATCT
*
17453573 TGTACACTTCGAGTTTTTAGCTGAATATTTTTT-TGCATGCCAACAAAAATAAAAGGATCATGTC
1 TGTACACTTCGAGTTTTTAGCTGAAT-TTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTC
* * ** *
17453637 TACCAAGTATGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTTGAACCGCAGAAAGTTT
65 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTT
* * * *
17453702 TAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTGCACGTGAAGCCTTAAGGGA
130 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* * *
17453767 CCAATGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAAAAATATGAAGATGTGCCTAA
195 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
*
17453832 ACCCACC-ACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCG
260 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----G
** *
17453896 CCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTACACATACGGAGTTCATTCCTAGTCTAAG
321 --C-CCT-CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * * *
17453961 ATCAAACCTGACTGAGGGTTACGGTAGCAGGATCGACAGAACGCAGAGGGGGACCCGATCGATCC
382 ATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCC
* * *
17454026 CCGCCTTGCGCATCCCGCCCCTTTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT--G--G-CTT
447 CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTT
*
17454086 --G---AC-----T--TT----G-----GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAG
512 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG
* * *
17454130 ACCGAGGGTTGCGATC-GCACATGCTAGGCTCGGGCATGTGCTGGTGTCGTATTTTTCTTCGCCG
577 ACCGAGGGTTGCGA-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCG
* * * * * * *
17454194 AGGTACCATCGTCGGAGCATCGTCGGAGAACCGGACCGGA-GGCATTGAGGTTTCGGCGATCGGG
641 GGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACC-GACGGCATTGGGGTTCCGGCGATCGGG
*
17454258 GGGCCCGGGGGGTGTGCGCACCTGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
705 GGG-CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
*
17454323 CTATCCCTCATCAAACCTCGAGAACTCACATCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTG
769 CTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* * *
17454388 CTACCAATTGCCATTAAAGTGTCTGAAATGGGGACACTATTTTCAAATGGTCACAAAATCT
833 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT-TTTTCAAATGGTCACAAAATCT
* *
17454449 TGTACACTTGGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCTTGTCT
1 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCT
* * * * * *
17454514 ACCAAGTTTGGGGCCAGAACTCCTTCCGACAAAAGTTTAAAAAATCCTGAACCG-TAAAAGTTTA
66 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTC
* * *
17454578 AAAAATCATTAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTGCACGTGAAGGCTTAAGGGAC
131 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* * * *
17454643 CATTGTACGAATATACAAGCCATAAAAATGGCATTGGCGTGCAGAAATTTGAAGATGTGCCTAAA
196 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
* * * *
17454708 CCCACCTATCACCCTATTGATTCACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTG-CCTA
261 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCT-
*
17454772 CCCGCCCGTCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
325 CCCG--C--CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* ** * * *
17454837 GACCAGACTGAGGGTTACGATAGCAGGATTGGTAGCACGCAGAGGGGGACCCGACTGATCCCCGG
386 GACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGG
* * * * * **
17454902 CTTGCGCATCCCGCCCATTTGGCCGGTTGAGCCCCCGCACACTTGTTTCGTGGGTTGACTTAGGC
451 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGC
* * *** *
17454967 ATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTGCCAGTCTAAGATTTAACTAGACCG
516 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCG
* *
17455032 AGGGTTGCGACAGCACATGCTAGGG-TCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGC
581 AGGGTTGCGACAGCACATGCT-GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGC
* * * **
17455096 ACCATCACCGGAGCATCGCCGTAGAACCTGACCGGA-GGCATTGGGGTTTCGATGATCGGGGGGC
645 ACCATCGCCGGAGCATCGCCGGAGAACCTGACC-GACGGCATTGGGGTTCCGGCGATCGGGGGGC
*
17455160 CGGGGGGTGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
709 C-GGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
*
17455225 TCCCTCATCAAACCTCGAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTA
772 TCCCTCATCAAACCTCGAGAACTCACACCC-CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
17455290 CCAATTGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
836 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTCAAATGGTCACAAAATCT
* * *
17455348 TGTACACTTGGAGTTTTTAGCTGAATATTTTTCTGCATGCCAACAAAAATACAAGGATCATGTCT
1 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCT
* * * * *
17455413 ACCAAGTATGGGG-CGAAACTCCTTCTGAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTC
66 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTC
* *
17455477 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTGCACGTGAAGGCATAAGGGAC
131 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
**
17455542 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAA
196 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
* * * *
17455607 CCCACCTACCACCTTATCGATCCACGGCTTTCGCATCCTGTCTTTCTGGCCGGCGTAGTG--CT-
261 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCTC
* ** **
17455669 -----CGCTCGTTTTGTCATTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCA
326 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* * * * * * * *
17455729 GACTGAGGGTTGTGGCAGCAAGATCAGTAGCATGCAGAGGGGGACCCGACCAATCCTCGACTTGC
391 GACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGC
* * ** * * *
17455794 GCATCCTGCCCCTTTGGCTAGTTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACA
456 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACG
* *
17455859 GAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATCGGACC-GATCCGAGGG
521 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA-CCGAGGG
* * * * *
17455923 TTGC-AGCAGCATATGCTGGGCTCGGGCATGTGCTGGTGTCGTATTTTTCTTCGTCGGGGCACAA
585 TTGCGA-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCA
* * * * * * *
17455987 TCACCAGAGCATCGTCGGAGAACCTGACTGGCGGCATTGGGGATT-AGGCGATTGGGGGGGCCGG
649 TCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGG-TTCCGGCGA-TCGGGGGGCCGG
* * *
17456051 TGGGTGTGCGCATAGGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
712 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
*
17456116 CATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
777 CATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* *
17456181 AGCCATTAAAGTGTCTGAAATGGGGGCACTTTCTTCAAATGGTCACATAATCT
841 AGCCATTAAAGTGTCTGAAATGGGGACACTTT-TTCAAATGGTCACAAAATCT
* *
17456234 TGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCCAA-AAAAATACAAGGATCACGTC
1 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG-CCAACAAAAATACAAGGATCATGTC
* * *
17456298 TACCAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTAAAAAATCTCGAATCGCAAAAAGTTT
65 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTT
* * *
17456363 CAAAAATTATGAAAAATAAAAAACGAGTCGTCTTGCCACGAAACTTCACGTGAAGGCTTAAGGGA
130 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
*
17456428 CCATTGTATGAATTTACAAGCCATAAAAATGACATTGGCATGCAGAAATATGAAGATGTGCCTAA
195 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
* * * *
17456493 ACCCACCTACCACCCTATCGATCCAAGGCTTGCGCACCCCGTTTCTCTGGCCGGCGTAGTGCCCG
260 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCT
* * * * **
17456558 CCCGCCCGTCCGCTTGTTTCGTCGGATGGCTTAGACATACGTAGTTCATTCCCAGTCTAAGATTG
325 CCCG--C--CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * * * *
17456623 GATCAGA-TCGAGGGATGTGGTAGCAGGATCGGCAGCACACAGAGGGGGACCCGACCAATCCCCG
386 GACCAGACT-GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCG
* *
17456687 GCTTGCGCATCCCGCCCCTTTGGCCAGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGG
450 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGG
* *
17456752 CATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACC
515 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACC
* * * * * *
17456817 GAGGGTTACGGCAGCACATGCTGGGTTCGAGCATGTGCTGGTACC-CTATTTTTCTTCACCGGGG
580 GAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC-ATTTTTCTTCGCCGGGG
*
17456881 CACCATCACC-GA--A-------A-AACCTGACCGACGGCATTGGGGTTCCGGCGATCGAGGGGG
644 CACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCG-GGGGG
17456935 CCAGTGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
708 CC-G-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * * *
17457000 ATCCCTCTTCAAACCTTGAGAACTCACACCCCCTTGAAGAGCATTTGAGATTTTACAAGTTTGCT
771 ATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
*
17457065 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCT
835 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA-CTTTTTCAAATGGTCACAAAATCT
* * * * **
17457124 TGTACACATT-GAGTTTTTACCTGAATTTTTTTATGCATACCAAAAAAAATACAAGGATCACATC
1 TGTACAC-TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTC
* * * * *
17457188 TACCAAGTTTGTGGCCAAAACACCTTCCAAAAAAATTTTAAAAAATCCCGAACCACTAAAAGTTT
65 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTT
** * * * * *
17457253 TGAAAATCTTGAAAAATAGAAAACGAGTTGTCATGCCACGAAACTTCACGTGAAGGCTTAAAGGA
130 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* **
17457318 CCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAA
195 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
* * *
17457383 ACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGTCGGCATAGTGCCCG
260 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT-----
* * *
17457448 CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCTCAGTCTAAG
320 ---GCCCTCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
** * * * * * *
17457513 ATTGGACCAGACTGACGGTTACGGCAGCATGATCGGCAACACACAGAGGGGGACCCGGCCGATCC
382 ATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCC
* * * * * *
17457578 CCGACTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCGCCCGCACGCCCGTTTCATTGGTTGACTT
447 CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTT
** * *
17457643 AGGTGTACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
512 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG
* * *
17457708 ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTGCTTCGCCGA
577 ACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGG
* * * *
17457773 GGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGATGGTATTAGGGTTCCGGCAATCGGGGG
642 GGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGG
**
17457838 GCCTGGGGGGGTGTAAGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
707 GCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* * * *
17457903 TATGCCTCATCAAACCTCGAGAACTCACATCCCCTTAAAAAGCCTTTGAGATTTTACAGGTTTGT
770 TATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
*
17457968 TACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
834 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTCAAATGGTCACAAAATCT
*
17458028 TGTACACTTGGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCT
1 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCT
* * * *
17458093 ACTGAAGTTTGGGGCCAAAATTCCTTCCAAAAAAATTTTAGAAAATCCCGAACCGCAAAAAGTTT
66 AC-CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTT
* * *
17458158 CAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAGCTTCACGTGAAGGCTTAGGGGA
130 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* *
17458223 CCATTGTATGAATTTACAAGCCCTAAAAATGGCATTGGCATGCAGAAATATGATGATGTGCCTAA
195 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
*
17458288 ACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCT
260 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCT
* *
17458353 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCTAGTCTAAGATCAGACC
325 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * * * *
17458418 AGAGC-AAGGGTTGCGGTAGCAAGATCGGCAGCACGCAGAGGGGGACCCGGCCAATCCCCGTCTT
390 AGA-CTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTT
* * * **
17458482 GCGCATCCTGCCCCTCTGGCCGGCTGAGCGACCACACGCTCATTTCGTTAGTTGACTTAGGCATA
454 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATA
* **
17458547 CGGCGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTTGTCTAAGATCGGACC-GACCGAGG
519 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGG
* * *
17458611 GTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGAGGCACCA
584 GTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCA
* * * ** * *
17458676 TTGCCAGAGCGTC-CCAGGAGAACCTGACCGACAACATTGGGGTTTCGGCGATCGGTGGGACCGG
649 TCGCCGGAGCATCGCC-GGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGG-GGGGCCGG
* * *
17458740 GTGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCTCTTATATTGGTCCCCTATCCC
712 G-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* *
17458805 TCATCAAACCTCGAGAACTCACACACCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCTAG
776 TCATCAAACCTCGAGAACTCACAC-CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* * *
17458870 TAGCCATTAAAGTGTCTGAAATGGAGACATCTTTTTCAAATGATCACAAATTCT
840 TAGCCATTAAAGTGTCTGAAATGGGGACA-CTTTTTCAAATGGTCACAAAATCT
* * * * *
17458924 TATACACTTTGAGTTTTCAGCTGAATTTTTTTGTGCATGCCGAA-AAAAATACAAGGATTACGTC
1 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AACAAAAATACAAGGATCATGTC
* *
17458988 TACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTT
65 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTT
** * * * *
17459053 TGAAAATCATGAAAAATAGAAAAGGAGTCATTTTGCCGTGAAACTTCACGTGAAGGCTTAAGGGA
130 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* *
17459118 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACTTAA
195 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
* * *
17459183 ACCCACCTACCACCCTATCGATCCATGGCTTGCACATCCCGTCTCTCTGGCCGGCGTAGTGCCCG
260 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCT
* * * * * *
17459248 CCCGTCTGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTTTACGATCGGACC
325 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * ** * *
17459313 AAACCGAGGGTTGCGGCAGTAGGATCGATAGCACGTAGAGGGGGACCCGACCGATCCCTGGCTTG
390 AGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTG
* * * * *
17459378 CGCATCCTGGCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC
455 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATAC
* * *
17459443 GGAGTTCATTCCTAGCCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGG
520 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGG
* *
17459508 TTGCGACAGCACATCCTGGGCAT-GGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCA
585 TTGCGACAGCACATGCTGGGC-TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCA
* * * *
17459572 TCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCAGGG
649 TCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCC-GGG
* *
17459637 GGTATGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
713 GG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
17459702 CATCAAACCTCGAGAACT
777 CATCAAACCTCGAGAACT
17459720 AACAATTGAA
Statistics
Matches: 5434, Mismatches: 583, Indels: 253
0.87 0.09 0.04
Matches are distributed among these distances:
868 7 0.00
870 1 0.00
872 154 0.03
874 1 0.00
875 146 0.03
876 461 0.08
877 6 0.00
879 1 0.00
881 1 0.00
882 2 0.00
885 5 0.00
886 237 0.04
887 544 0.10
888 90 0.02
889 241 0.04
890 459 0.08
891 5 0.00
892 3 0.00
893 1 0.00
894 283 0.05
895 472 0.09
896 525 0.10
897 239 0.04
898 198 0.04
899 711 0.13
900 111 0.02
901 2 0.00
902 33 0.01
903 2 0.00
904 236 0.04
905 257 0.05
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (892 bp):
TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCT
ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTC
AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCTC
CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
GACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGC
GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACG
GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGT
TGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATC
GCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGG
TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
AAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
TTAAAGTGTCTGAAATGGGGACACTTTTTCAAATGGTCACAAAATCT
Found at i:17459467 original size:26 final size:26
Alignment explanation
Indices: 17459437--17459489 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17459427 GTTGACTTAG
17459437 GCATACGGAGTTCATTCCTAGCCTAA
1 GCATACGGAGTTCATTCCTAGCCTAA
*
17459463 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGCCTAA
17459489 G
1 G
17459490 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGCCTAA
Found at i:17460313 original size:26 final size:26
Alignment explanation
Indices: 17460277--17460329 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17460267 GTTGATTTAG
17460277 GCATACGGAGTTCATT-CCTAGTCTAA
1 GCATACGGAGTTCATTGCC-AGTCTAA
*
17460303 GCATATGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATTGCCAGTCTAA
17460329 G
1 G
17460330 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTGCCAGTCTAA
Found at i:17462190 original size:825 final size:824
Alignment explanation
Indices: 17460459--17462223 Score: 2536
Period size: 825 Copynumber: 2.1 Consensus size: 824
17460449 TGAGGACCGG
*
17460459 CGATCGGGAGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTTCTTGGCCCTTAT
1 CGATCGGG-GGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* * * *
17460524 AGTGG-CCCCTATCCCTCATTAAACCTCTAGAACTCACACCCCCTTAAAGAGCATCTGAGATTTT
64 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATCTGAAATTTT
* * * *
17460588 ATAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTGAAATTGGGTCACTTTTTTCAAATGGTCACAA
129 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* *
17460653 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTACGCATGCCAACAAAAAGACAAGGATCA
194 AATCTTGTACACTTCGAGGTTTTAGCTGAATTGTTTTACGCATGCCAACAAAAAGACAAGGATCA
* * **
17460718 CGTCTACCGAGTTTTGGGCCAAAACTCCATCCGAAAAAATTTTAAAAAAACCTGAACCGCAAAAA
259 CGTCTACCAAGTTTGGGGCCAAAACTCCATCCGAAAAAATTCCAAAAAAACCTGAACCGCAAAAA
* *
17460783 GTTTCAAAAATGGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
324 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAA
* *
17460848 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGC
389 GGGACCATTGTAGGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGC
* * * * * * * *
17460913 CTAAATCCACCTACCCCTTATTGATCCACGGCTTGCGCATCCAGTCTCTCTGGCCGGCGTAGTGC
454 CTAAACCCACCTACCCCCTATCGATCCACAGCTTGCGCATCCAGTCTCCCTAGACGGCGTAGTAC
* * ***
17460978 CCGCCCGTCCGTCCACTCCTTTCGTCGGTTGGCTTAGGTATACGGAGTTCATTCCCAGTTTAAGA
519 CCACCCGTCCGCCCACTCCTTTCGTCGGTTGGCTTAGGTATACGGAGTTCATTCCCAACCTAAGA
* ** * * *
17461043 TCAGATCGGATGGAGGGTTGCAGCACTAGGATCGACAGCACGCAGAGCGGGACCCGGCCGATCCC
584 TCAGATCAGACCGAAGGTTGCAGCACTAGGATCGACAGCACGCAAAGCGGGACCCGACCGATCCC
* * * *
17461108 CGGCTTACACTTCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATCGGTTGACTTA
649 CGACTTACACATCCTGCCCCTCTGGCCGGCTAAGCACCCGCACGCTCGTTTCATCGGTTGACTTA
* * *
17461173 GGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTGCAGCAGCAAGATCGGT
714 GGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACAGCAGCAAGATCGAT
* * *
17461238 AGCACGCAGAGGGGGAGCCAGCCGATCCCCGGCATTGGGGTTCCGA
779 AGCACGCAGAGAGGGACCCAGCCGATCCCCGGCATTAGGGTTCCGA
** * *
17461284 CGATCGGGGGGGTGGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCATTATAT
1 CGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* * * * *
17461349 TGGCCCCCTGTCCCTCATCAAACCTAGAGAACTCACACCCCCATAAAGGGCATTTGAAATTTTAC
66 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATCTGAAATTTTAC
* *
17461414 AGGTTTGCTGCCAGTAGCCCTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAGAAAA
131 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * * * ** *
17461479 TGTTTTACACTTTGAGGTTTTAGCTGAATTGTTTTATGTGTGCCAACAAAAATACAAGGATCACG
196 TCTTGTACACTTCGAGGTTTTAGCTGAATTGTTTTACGCATGCCAACAAAAAGACAAGGATCACG
* ** *
17461544 TCTACCAAGTTTGGGGCCAGAAA-TCCTTCCGAAAAAATTCC-AAAAAATTTCGAACCGTAAAAA
261 TCTACCAAGTTTGGGGCCA-AAACTCCATCCGAAAAAATTCCAAAAAAACCT-GAACCGCAAAAA
*
17461607 GTTTCAAAAATCTTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAA
324 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAA
**
17461672 GGGACCATTGTAGGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGA-GATG
389 GGGACCATTGTAGGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATG-TG
*
17461736 CCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCCCTAGACGGCGTAGT
453 CCTAAACCCACCTACC-CCCTATCGATCCACAGCTTGCGCATCCAGTCTCCCTAGACGGCGTAGT
* **
17461801 ACCCACCCGTCCGCCCGCTTGTTTCGTCGGTTGGCTTA-GTCATACGGAGTTCATTCCCAACCTA
517 ACCCACCCGTCCGCCCACTCCTTTCGTCGGTTGGCTTAGGT-ATACGGAGTTCATTCCCAACCTA
** * * * * *
17461865 AGATCAGATCAGACCGAAGGTTGTGGTAGC-AGGATCGACATCATGCAAAGGGGGACCCGATCGA
581 AGATCAGATCAGACCGAAGGTTGCAGCA-CTAGGATCGACAGCACGCAAAGCGGGACCCGACCGA
* * *
17461929 TCCCCGACTTACGCATCCTGCCCCTCTGGCCGGCTAAGCACCCGTACGCTCGTTTCATGGGTTGA
645 TCCCCGACTTACACATCCTGCCCCTCTGGCCGGCTAAGCACCCGCACGCTCGTTTCATCGGTTGA
* * *
17461994 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGGCCGGACCGAGGGTTACGGCAGCAGGAT
710 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACAGCAGCAAGAT
* * *
17462059 CGATAGCACGCAGAGAGGGACCCAGTCGATCCCCGTCATTAGGGTTCTGA
775 CGATAGCACGCAGAGAGGGACCCAGCCGATCCCCGGCATTAGGGTTCCGA
* * *
17462109 CGATCGAGGGGGCCGGGGGG-GTGCCCAAATGATGTGCGTTGGGTGCTGGTACTTGGCCCTTATA
1 CGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
17462173 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
65 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
17462224 GATTTTAAAA
Statistics
Matches: 828, Mismatches: 104, Indels: 16
0.87 0.11 0.02
Matches are distributed among these distances:
823 59 0.07
824 351 0.42
825 406 0.49
826 12 0.01
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.24
Consensus pattern (824 bp):
CGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATCTGAAATTTTAC
AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
TCTTGTACACTTCGAGGTTTTAGCTGAATTGTTTTACGCATGCCAACAAAAAGACAAGGATCACG
TCTACCAAGTTTGGGGCCAAAACTCCATCCGAAAAAATTCCAAAAAAACCTGAACCGCAAAAAGT
TTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
GACCATTGTAGGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCT
AAACCCACCTACCCCCTATCGATCCACAGCTTGCGCATCCAGTCTCCCTAGACGGCGTAGTACCC
ACCCGTCCGCCCACTCCTTTCGTCGGTTGGCTTAGGTATACGGAGTTCATTCCCAACCTAAGATC
AGATCAGACCGAAGGTTGCAGCACTAGGATCGACAGCACGCAAAGCGGGACCCGACCGATCCCCG
ACTTACACATCCTGCCCCTCTGGCCGGCTAAGCACCCGCACGCTCGTTTCATCGGTTGACTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACAGCAGCAAGATCGATAG
CACGCAGAGAGGGACCCAGCCGATCCCCGGCATTAGGGTTCCGA
Found at i:17462679 original size:26 final size:26
Alignment explanation
Indices: 17462643--17462695 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17462633 GTTGACTTAG
17462643 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17462669 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17462695 G
1 G
17462696 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17463582 original size:26 final size:26
Alignment explanation
Indices: 17463546--17463595 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
17463536 GACTTAGGCA
*
17463546 TACGGAGTTCATTCTAAGTCTAAGCT
1 TACGGAGTTCATTCCAAGTCTAAGCT
*
17463572 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCAAGTCTAAG
17463596 ACACACCATC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.32
Consensus pattern (26 bp):
TACGGAGTTCATTCCAAGTCTAAGCT
Found at i:17463821 original size:26 final size:26
Alignment explanation
Indices: 17463791--17463843 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17463781 GTTGACTTAG
* *
17463791 GCATACGGAGTTCGTTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
17463817 GCATATAGAGTTCATTGCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17463843 G
1 G
17463844 ATTGGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17466500 original size:26 final size:26
Alignment explanation
Indices: 17466470--17466522 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17466460 GTTGACTTAG
* *
17466470 GCATACGGTGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17466496 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17466522 G
1 G
17466523 ATCGAATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17466852 original size:894 final size:893
Alignment explanation
Indices: 17465599--17484155 Score: 9474
Period size: 864 Copynumber: 20.7 Consensus size: 893
17465589 GTTAACTTAG
* *
17465599 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGACTGAGGGTTGTGGCAGCACATGCTTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGAC-GAGGGTTGCGGCAGCACATGCTGGG
* * ** * *
17465664 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCAAGGCACCATCGCCGGAGCATTG-TCGGAG
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCT-GGAG
* *
17465728 AACCTGACCAGCGGCATTGGCGTTCCGACGATCGGGGGGGCCGGGGGGGTGGTGTGCGCACATGA
129 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC---GGGG-GGTGTGCGCACATGA
* * * *
17465793 TGTACGATGGGTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTTGAGAAC
190 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* ** *
17465858 TCACAGCCCCTTTGAGAGCATTCGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-
255 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
**
17465922 ATAATGGGGACACTTTTTTCAAATGGTCGTAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
320 A-AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
*
17465987 TTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACCCTTTCCA
384 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCC-TTCCA
* * *
17466052 AAAAAATTCTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTC
448 AAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTC
* *
17466117 GTCTTGCCATGAAAGTTCA-GTGAAGGCTTAAGGGACCATTGTATGAATTTACAA-CAATAAAAA
513 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * *
17466180 TGGCGTTGGCATGCAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACGGC
578 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* *
17466245 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTTGTTTCATCGGTTGGCTTA
643 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * * * *
17466310 GGCATACGGACTTCATTCCCAGTCTAAGATCGGACCAGACTGAGCGTTATGGCAGCAAGATCAGT
708 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGGATCGGC
* * ** *
17466375 AGCACGCAGAGGGGGACCCGATCGATCCTCGACTTGCGCATCTTGCCCCTCTAGCCGGCTGAGCG
773 AGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * * * *
17466440 CCTGCACGCCCGTTTCATGGGTTGACTTAGGCATACGGTGTTCATTCCCAGTTTAA
838 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
17466496 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATTGGACTGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGAC-GAGGGTTGCGGCAGCACATGCTGGG
* * * *
17466561 CTCGGGCATGTGCTGGTGCCGCACTTTTATTCGCCGGGGCACCATCGTCGGAGCATCGCTAGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCTGGAGA
*
17466626 ACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCGGAGGGGTGTGCGCACATGATGTG
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGG-GGGGTGTGCGCACATGATGTG
* * *
17466691 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCCAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
17466756 ACCCCCTCAAAAAGCATTTGAGATTTTACAGGTTTGCTCCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
17466821 GGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * **
17466886 TGCATGCCAAAAAAAATGCAAGGATCACGTCTGCCAAGTTTGGGATCAAAACTCCTTCCAAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-CCTTCCAAAAAA
* * * *
17466951 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGGAAAATAGAAAACGAGTCGTCTT
453 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
17467016 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
17467081 TTGGCATGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
583 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
17467146 CATCCCGTCTTTCTAGTCGGCGTAGTGCCCGCCCGCCCCCGCCCTCGTTTCATCGGTTTGCTTAG
648 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG--CCCG--CTCGTTTCGTCGGTTGGCTTAG
* * *
17467211 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGA-CGAGGG---CGGCAGTAGGATC-GCA
709 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGGATCGGCA
* * *
17467271 --A-G-AGA--GGGACCCGA-CGATCCCCAGCTTGCG-ATCCTGCCCCTCTGGCC-GCTGA--G-
774 GCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * *
17467324 CCGCACGCTAGTTTCGTGTGTTGACTTAAGCATACGGAGTTCATT-CCAGTTCTAA
839 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG-TCTAA
*
17467379 G-AT-C-GA--TCA---CCAGTCTAAG-TGCGAA----A--AGGGTT-CGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGAT-CGAATCGGACGAGGGTTGCGGCAGCACATGCTGGG
*
17467428 CTCGGGCATGTGCT-GTGCC-AATTTTTCTTTCGTC-GGGCACCATC-TCGGAGCATTCG-TCGG
65 CTCGGGCATGTGCTGGTGCCGCATTTTTC-TTCGTCGGGGCACCATCGTCGGAGCA-TCGCT-GG
17467488 AGAACCTGA-CGGCGGCATTGGGG-TCC-ACGATC--GGGGGCCGGGGGGTGTGC-CACAATGAT
127 AGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCAC-ATGAT
* *
17467547 GTGTGATGGGTGCTGGTATTGTGGCCGCTTATTATTGG--CCCTAATCCCTTCATCAAAACCT-G
191 GTGCGATGGGTGCTGGTACT-TGGCC-CTTA-TATTGGCCCCCT-ATCCC-TCATC-AAACCTCG
17467609 AGAAACTCATCA-CCCCTTAAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
250 AG-AACTCA-CACCCCCTT-AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* *
17467673 TGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
312 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* *
17467738 TGAATTTTTTTGTGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGAGCCAAAACT
377 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-
* * *
17467803 CCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAGTCATGAAAATTAGAAA
441 CCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAA
* *
17467868 ACGAGTCGTCTTCCCATGAAACTTCACGTGTAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
506 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* *
17467933 ATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCAATCGAT
571 ATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * *
17467998 CCACGGCTTACGCATCCCGTCTCTCTGGCCGACGTAGTG--C-CCAG-CCTCTCGTTTCGTCGGT
636 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGT
* * * * * *
17468059 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAATCAAGGGTTGCGAACA-TA
701 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACG-GCAGCA
* * * * *
17468123 GGATCGGCAGCACACAGAGGGGGACCTGGCCGATCC-CTGATTG-GCATCCCGCCCCTCTGGCCG
765 GGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCG
* *
17468186 GCTGAACGCCCGCACGCTCGTTTCGTGCGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
830 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
17468250 G-ATA--G-G---A----C---C---G---G-A-C---CGAGGGTTGTGGTAGCACATGCTGGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGACGAGGGTTGCGGCAGCACATGCTGGGC
** * *
17468290 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGGAGCATCACCGGAGA
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCGCTGGAGA
* * *
17468355 ACCTGACCGAC-GCATTGGGGTTCC-AGCGATC-GGGGGGCCGGGGGGTGTGTGCGCATGATGTG
130 ACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
**
17468417 CGATGCCTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
17468482 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTATGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
17468547 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
*
17468611 TGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCGAAAACTCCTTCCAAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-CCTTCCAAAAAA
17468675 ATTTTAAAAAATC-CAGAACCGTAAAAAGTTTT-AAAATCATGAAAAATAG-AAA--A-------
453 ATTTTAAAAAATCTC-GAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCT
17468728 ----ATGAAACTTCACGTGAAGGCTTAAGGGACCATTCGTATGAATTTTACAAGCCATAAAAATG
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT-GTATGAA-TTTACAAGCCATAAAAATG
*
17468789 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA-CACCCTATCGATCCACGGCTT
580 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
17468853 GCGCATCTC-TCTCTCTGGCC-GCGTAGTGCTCGCCCGCCCACCGCTCG-TTCGTCGGTTGGCTT
645 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG--C-CCGCTCGTTTCGTCGGTTGGCTT
* * * * * * *
17468915 AGGCATA-TGAGTTCATTCCCAGTCTAAAATCAGACCGGA--AAGGGTTGCGGTAGCAGGAT--G
707 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGGATCGG
* *
17468975 CAGCACGCAGAGGGGGA--C--CCGATCC-CTGCATT--GCATCCTGCCCCTCTGG-CGGCTGA-
772 CAGCACGCAGAGGGGGACCCGACCGATCCTCGGC-TTGCGCATCCCGCCCCTCTGGCCGGCTGAG
*
17469031 -ACCCGCA--CTCG--T--T---TT--C----G--T---GA-TTCA----C--T-T-A
836 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
17469059 GCATACGGAGTTCATT-CCAGTCTAAGATCAGACT-GG-CGAGGGTTGTGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAATCGGACGAGGGTTGCGGCAGCACATGCTGGG
* * *
17469121 CTCGGGCATGTGGCTGGT-CTGCATTTTTCTTCGTCGGGGCACCCATC-TCGGAGCACTCACCGG
65 CTCGGGCATGT-GCTGGTGCCGCATTTTTCTTCGTCGGGGCA-CCATCGTCGGAGCA-TCGCTGG
* * * *
17469184 AGAACCTGA-CGGCGGCGTTGGGGTTCTG-CGATCGGGGGGACC-GGGGGT-TGCCTCACATGAT
127 AGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTG-CGCACATGAT
* * * *
17469245 GTGCTGATTGGTGCTGGTACTTGTCACCTTCATATTGGCCCCCAATCCCTCATCAAACCTTGA-A
191 GTGC-GATGGGTGCTGGTACTTGGC-CCTT-ATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
*
17469309 GACTCACA-CCCC-TAAAGAGCATTTGAGATTTTACAGGCTTTGCTGCCAGGTAGCCATT-AACT
253 -ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG-TTTGCTGCCA-GTAGCCATTAAAGT
17469371 GTCTTGAAAT-GGGACACTTTTTTCAAAATGGTCACAAAGATCTTGTACACTTTCGAGTTTTTAG
315 GTC-TGAAATGGGGACACTTTTTTC-AAATGGTCACAAA-ATCTTGTACAC-TTCGAGTTTTTAG
* * *
17469435 CCTGAAATTTTTTATGGATGCCAACAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
376 -CTGAATTTTTTTGTGCATGCCAAC-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* * * *
17469500 ACCCCTTCCAACCAAAAATTTCT-AAAAATCCCGAACCGCAAATAAAG-GTTGAAAATCATGGAA
439 A-CCCTTCCAA--AAAAATTT-TAAAAAATCTCGAACCG-TAA-AAAGTTTTAAAAATCAT-GAA
*
17469563 AAATAGAAAAACGGAGTCGTCTTGCCAATGAAACATTCCACGTCGTAGGCTTAAGGGACCATTGT
497 AAATAG-AAAAC-GAGTCGTCTTGCC-ATGAAAC-TT-CACGT-GAAGGCTTAAGGGACCATTGT
17469628 ATGAATTTACAA-CCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACC
556 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACC
**
17469692 TACC-CCCTATCGATCCA-GGCTTGACGCAT-CCGTCTCTATCT-GCCGAAGTAGTG-CCGCCGC
621 TACCACCCTATCGATCCACGGCTTG-CGCATCCCGTCTC--TCTGGCCGGCGTAGTGCCCG-C-C
* *
17469752 CGCCCACTTTCGTCTT--TCAGTGTT-GCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCAG
681 CGCCCGC--TCGT-TTCGTC-G-GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* * * * * *
17469813 A-CTGA-CAAGGGTTGCAGCAGCAGGATCGGCAGCATGCAGAGGGGGA-CCG-GCGATCCT--GC
741 ACCAGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCTCGGC
* ** * *
17469872 -TGC-CAT-CCG-CCCT-TTG--GTTTGAGCG-GCACACGCTCG-TTCGTGGGTTGAC-TAGGCA
806 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
17469927 TACGGAGTTCATT--CAGTCTAA
871 TACGGAGTTCATTCCCAGTCTAA
* * * * *
17469948 GCGTACGAAGTTCATTCCCA-TCTAAGATCGGCA-CTGGA--ACCGGTTGCTGCAGCACATGCTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAATC-GGACGA-GGGTTGCGGCAGCACATGCTG
* * *
17470009 GGCTCGGGCATGTGC-GGTGCC-CGTATTTTCTTCGTCGAGGCACCATCGATC-GAGCGTAC-C-
63 GGCTCGGGCATGTGCTGGTGCCGCAT-TTTTCTTCGTCGGGGCACCATCG-TCGGAGCAT-CGCT
* * ** * *
17470069 GGAGAACCTGACCGACGGGCAGTT-GGGTTCCAACGATCGGGCGGGGCCCAGGGATG-GCCTGCG
125 GGAGAACCTGACCGGC-GGCA-TTGGGGTTCCGACGATCGGG-GGGGCCGGGGGGTGTG-C-GCA
* ** *
17470132 CATGATGTGCAATGGGTGCTGGTACTTATCCCTTATATTGGCCCCCTATCCCTCATCAAAGCTCG
185 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
* * *
17470197 AGAAATCACACCCCCTTAAAGAGCATTTGAGATGTTACAGGTTTACTGCCAGTAGCCATTAAAGT
250 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
*
17470262 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGTG-TTTTAGCTGA
315 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * **
17470326 ATTTTTTTATGCATGCCAACAAATATACAAGGATCACGTCTA-CAAGTTTGGGGCCAAAACTTTT
380 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-CCT
* * * * *
17470390 TCC-AAAAGATTTTAAAAAATCCCGAACTGAAAAAAGTTTTGAAAATCATGAAAAATAGAAAACG
444 TCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACG
* * *
17470454 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATCAATTTACAAACCGT-
509 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* * * * *
17470518 AAAATGGCATTGGCACACAGAAATATGAAAATGTGCCTAAA-GCACCTACCACCTTATTGATCCA
574 AAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
** * *
17470582 CGGGCTTGCGCATCTTGTCTCTCTGGCCGGCGTAATGCCCCACCGCCCGCCCGCCCGCTCATTTC
639 C-GGCTTGCGCATCCCGTCTCTCTGGCCGGCGT-A-G------TGCCCGCCCGCCCGCTCGTTTC
* * * * *
17470647 GTCGGTTGGCCTAGGCATACGGAGTTCCACTCCCAGTCTAAGATTGGACCGGACCGAGGGTTATG
695 GTCGGTTGGCTTAGGCATACGGAGTT-CATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACG
* * * * *
17470712 GCAGTAGGATCGGCAGCACGTAGA-GGGGACCCGATCGATCC-CTGGCTTCCGCATCCCGCCCCC
759 GCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCTC-GGCTTGCGCATCCCGCCCCT
*
17470775 CTGGCCGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
823 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
17470840 GTCTAA
888 GTCTAA
* * *
17470846 GCATACGGAGTTCATTCCCAGTCTACGATCGGATCGGACCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGA-CGAGGGTTGCGGCAGCACATGCTGGG
* * **
17470911 CTCGAGCATGTGCTGGTTCCGCATTTTTCTTCACCGGGGCACCATCG-C----CA------GAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCTGGAGA
* * *
17470965 ACCTGACCGGTGGCATTGGGGTTCCGACGATCGGCGGGGTCGGGGGGGCTGTGCGCACATGATGT
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGG-GGGGGCCGGGGGG-TGTGCGCACATGATGT
* *
17471030 GCGATGCGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
17471095 CACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTTCTGCCAGTAGCCATTAAAGTGTCTAAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
17471160 TGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * **
17471225 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAAATCCTTCTGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC-CAAAACCCTTCCAAAAA
* * * *
17471290 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATTGAAAACAAGTCGTCT
452 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCT
17471355 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** * * * ** * *
17471420 ATTGGCACATAGAAATATGACGATGTTCCTAAACACACAAACCACCATATCGATCCATGGCTTGC
582 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
** *
17471485 GCATCCCGTCTCTCTGGCCAACGTAGTGCCCGCCCGCCTGCCCGCCCGCTCGTTTTGTCGGTTGG
647 GCATCCCGTCTCTCTGGCCGGCGTAGT----G--C-CC-GCCCGCCCGCTCGTTTCGTCGGTTGG
* * * * * *
17471550 CTTAGGTATACGGAGTTCACTCCCAGTCTAAGATTGGACCAGGCTGAGGGTTACAGCAGCAGGAT
704 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGGAT
* * * * ** ** * *
17471615 CGACAGCACGTAGAAGGGGACCCGACCGATCCCCAACTTGTACATGCCGCCCCTCTTGG-CGACT
769 CGGCAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTC-TGGCCGGCT
* * *
17471679 GAGCGCCCCGCACG--C---TC----GTTGACTTTGGCATATGGAGTTCATT-CCAGTCTAC
833 GAGCG-CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
17471731 GCATAC-GAGCTTCATTCCCAGTCTAAG-TCG-ATCGGACCGAGGGTTGCGACAGCACATGCTAG
1 GCATACGGAG-TTCATTCCCAGTCTAAGATCGAATCGGA-CGAGGGTTGCGGCAGCACATGCT-G
* * * * * *
17471793 GGCTCAGGCATGTGCTGGT-CTGTATTTTTCTTCGTCGAGGCACCATCGTCAGAGCAAT-GC-AG
63 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGC-ATCGCTGG
** * *
17471855 AGAACCTTGACCGGCGCGTGTTGGGGTTTCGATGATC-GGGGGGCCGGGGGGTGTGCGCACATGA
127 AGAACC-TGACCGGCG-GCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGA
*
17471919 TGTGCAATGGGTGCTGGTACTTGGCCCCGTTATATTGGCCCCCTATCCCTCAATCAAACCTCGAG
190 TGTGCGATGGGTGCTGGTACTTGG-CCC-TTATATTGGCCCCCTATCCCTC-ATCAAACCTCGAG
17471984 AACTCACACCCCCTTAAAG-GCAATTTGAGA-TTTACAGGTTTGCTGCCAGTAGGCCATTAAAGT
252 AACTCACACCCCCTTAAAGAGC-ATTTGAGATTTTACAGGTTTGCTGCCAGTA-GCCATTAAAGT
* *
17472047 GTCTGAAAT-GGGACACCTTTTTCAAATGGTCACAAAATCTTGTATAC-TCGAG--TTTAGCTGA
315 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
*
17472108 ATTTTTTTGTGCATTGCCAAC-AAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCC
380 ATTTTTTTGTGCA-TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-CC
* ** * * * *
17472172 TTCCAAAAAAACTTTAAAAAATCTCGAAAAGCAAAAGGTTTCAAAAATCGTGAAAAATAGAAAAC
443 TTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAAC
* *
17472237 GAGTCGTCTTGCCATGGAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCAT
508 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * * ** *
17472302 AAAAA-GGACATTGTCACGTAGAAATATGAAGATGTGCCAAAACCCACCTACTGCCCTATCGATG
573 AAAAATGG-CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * ** * * *
17472366 CACGTCTTGCGCATCCCGTCTCTCTGGCCCGTATAGTGCCCACCCGCCCGTTCATTTCGTCGGTT
637 CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTT
** * *
17472431 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCATACCAGACCAAGGGTTAC-GCTAGTAG
702 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGC-AGCAG
* * ** * **
17472495 GATCGGTAGCACACAGAAAGGGACCGGGTCGATCCTCGGCTTGCGCATCCCGACCCC-CTGGCCG
766 GATCGGCAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCG-CCCCTCTGGCCG
* * * *
17472559 ACTGAGCGCCCGCACCCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
830 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
17472623 GCATACGAAGTTCAGTCCCAGTCTAAGATC-AGACCGGACCAAGCGTTGCGGCAGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-ATCGGA-CGAGGGTTGCGGCAGCACATGCTGG
* * ** * * * * * *
17472687 GCTCGAGCATGAGCTGGTGCCATATTTTTCTCCG-CTAGGGCACCACCGTCGGAGCATCACCGAA
64 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGCTGGA
* * * * **
17472751 AAAGCTGACCGACGGCATTGGGGTTTCGGTGATCGGGGGGGCCGGGGGGTGTGTGCGCACATGAT
128 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGG-GTGTGCGCACATGAT
* * *
17472816 GGGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTTGAGAACT
191 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
*
17472881 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGG-TTACTGCCAGTAGCCATTAAAGTGTCTGA
256 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
17472945 AATGGGGACCCTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC-GAAATTGT
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-AATTTT
* * * * *
17473009 TTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGA
385 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAACCCTTCCAA
* * * * *
17473074 AAAAATTTTAAAAAATCAT-GAATCGCAAATAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
449 AAAAATTTTAAAAAATC-TCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTC
* *
17473138 ATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
513 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
** * *
17473203 TGGCATTCACAAGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
578 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * *
17473268 TTGCGCATCCCGTCTCTCTGGTCGGTGTAGTGCTCGCCCGCCCTCCCGCGCTTTTGTTTCGTCGG
643 TTGCGCATCCCGTCTCTCTGGCCGGCGTA--G-T-GCCCGCCC-GCC-CGC--TCGTTTCGTCGG
* * * * **
17473333 TTGGCTTAGGCAGACGGAGTTCATTCCTAGTCTAAGATTGGACC-GAGCTGAGGGTTACGGCAAT
700 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA-CCGAGGGTTACGGCAGC
* **
17473397 AGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCC-CAGGCTTGCGCATCTTGCCCCTCTGGC
764 AGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCTC-GGCTTGCGCATCCCGCCCCTCTGGC
* * * *
17473461 CGACTGAGCACCCGCACGCTCGTTTCGTAGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTA
828 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
*
17473526 T
893 A
* ** ** * * * ** ** *
17473527 G-ATGTAC--ACTTTTTTCAAAGGGATCATTGTATGAATTTGCAAGCCATAAAAATGGCATTGGC
1 GCA--TACGGAGTTCATTCCCA--G-TC----TAAG-A-TCG-AA-TC-GGACGA-GG-GTT-GC
** * * * * * **** *** * * ** ** * *
17473589 ACACAG-AAAT-ATGAAGAT-GTGCCTAAACCCACCTACCACCCTATTGATCCACAG-CTTGCGC
49 -GGCAGCACATGCTG-GGCTCG-GGC-ATGTGCTGGT-GC-CGC-ATTTTTCTTC-GTC-GGGGC
* * * * ** * * * * ** * *
17473650 ATCCCGTCTCTCTG-GC--CGGC-GTAGTGCCTGCCCGCCCGCCTGCCTGCTCGTTTC-ATCGGT
105 A--CCATC-GTCGGAGCATC-GCTGGAGAACCTGACCGGCGGCAT---TG-GGGTTCCGA-CGAT
* *** ** * * * * * *
17473710 TGGCTTAGGCATAC-GAAGTTCATTCTCAGTCTAAGATCAGACTG-GATCAAGGGTTGC-GGAAG
161 CGG-GGGGGC---CGGGGGGT-GTGCGCA--C-ATGAT--G--TGCGAT---GGG-TGCTGGTA-
* ** * ** * ** ** * * * ** *
17473772 CAGGATCGGCAGCACGCAAAGAGGTACCATGCAGAGGGGGACC-CAGTCGATCCCCGACTTACGC
209 C----TTGGC--C-CTTATATTGG--CC--CCCTA----TCCCTCA-TCAAACCTCGA-GAACTC
* ** *** * * * * *
17473836 ATTCCGCCCCTCTGGTCGACTGAGCACCCGCATACTCGTTT-CGTGGGTTGACTTAGGCATACGG
257 A---CACCCC-CT--T--AAAGAGCATTTG-AGA-T--TTTAC-AGGTTTG-C-T--GC-CA-GT
* ** ** * * * * * * **
17473900 AGTTCATTCCCA--GTCT-AATAT-CAGAC-C---GTACCAAGGGTTACGTAGCACATGC-TGGG
303 AG-CCATT-AAAGTGTCTGAA-ATGGGGACACTTTTTTCAAATGGTCAC--A--AAAT-CTTGTA
* ** * ** * * * * ** *
17473956 CTCGGGCAAGTGCTGATG-TCACATTTTTCTTCGTCGGGGCCCATCGCCGGA-GAACCTA-ACCG
360 CAC-TTCGAGTTTTTA-GCTGA-ATTTTT-TT-GT----G--CAT-GCC-AACAAAAATACA-AG
* * * * ** ******* * * * *** ****
17474018 GCAACATTGGGGTTCTGACGATCG-GAGGGGCCGGGGGGGTGCGC-ACATAATGTGCGATGGGTG
411 G-ATCA----CG-TCT-ACCA-AGTTTGGGGCCAAAACCCTTC-CAAAAAAAT-TTTAAAAAAT-
** * *** *** **** * ** * * ***
17474081 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCA-AGAAC---TC-ACACCC
465 C---T-C--GAACCGTA-AAAAG--TTTTAAAAATCATGAAAAAT-AGAAAACGAGTCGTCTTGC
* * *** ** * * * * * *
17474141 CCTTAAAGAGCATTTG-AGGTTTTACAGGTTTACTGCCA--GTA-G-CTATTAAAATGTC-T-GA
520 CATGAAACTTCACGTGAAGG-CTTA-AGG--GA---CCATTGTATGAAT-TTACAA-GCCATAAA
**** * ** * * * * ** *
17474199 AATGGGGACACTT--TTTTCA-AATGGTAACAAAATCTTG--TACACTTCGAGTTTTTAGCTGAA
576 AAT--GG-CA-TTGGCACGCAGAA--ATATGAAGAT-GTGCCTAAAC--CCA---CCTA-C--CA
*** * * *** *** * * * *** *
17474259 TTTTTTTGTGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGG--GGCG-AAAACTA
626 -CCCTAT-CG-AT-CC-AC--GGCT-TGCGCATCCCGTCT--C---TCTGGCCGGCGTAGTGC-C
*** ***** * **** ** * * * ** **
17474321 CTTTCGAAAAAT-TTTAAAAAATC-TCGAACCGCAAAAAGTTTCAAAAATCGTGAAAACTAGAAA
677 CGCCCGCCCGCTCGTT------TCGTCGGTTGGC--TTAG--GC--ATA-CG-G---AGTTCATT
* * ** * *** * * * * ***
17474384 ACGAGTCGTCTTGCCAT-GAAACTTCACGTGAAGGCGTAAGGGACCATTGCAAGAATTTACAAGC
725 CCCAGTC-T-AAG--ATCG-GACCAGAC-CG-AGG-GTTACGG--CA--GC-AGGATCGGC-AG-
*** * * * * ** *** ** * *
17474448 CATAAAAATGGCATTGGCATGCAGAAATATGAAGAT-GTGCCTAAACCCA-CCTAC-CACCCTAT
775 CACGCAGA-GG----GGGA-CCCG--A-CCGATCCTCG-G-CT-TGCGCATCC--CGC-CCCTCT
* * * * ** * * * ** *
17474510 CGATCCACGGCT-TGCGCATC-C-CGC-C-TCTC-T-GGCCGACGTAGTGCCTGCCCGCCCGCTC
825 -G--GC-CGGCTGAGCGC-CCGCACGCTCGTTTCGTGGGTTGACTTAG-GCAT--ACG-GAGTTC
* * * *
17474568 GTTTCGTCGGTTGGCTTAG
881 -ATTC-CCAG-T--C-TAA
* * ** * * * *
17474587 GCATATGGAGTTTATTCTTAGTCTAAGATC-AGATCAGACCAAGGGTTGCTGCAGCAGGATTGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-ATCGGA-CGAGGGTTGCGGCAGCA-CA-TG-C
* ** * * ** * * * * * *** *
17474651 AGCACACAGAGGGGGACCTGACTGATCCTCGGC-TTGTGCATCCTGCCCCTCTGGCTGG-TTGAG
61 TGGGCTC----GGGCATGTG-CTGGTGC-C-GCATT-T---TTCT--TCGTC-GG--GGCACCAT
* * ** * * * *** *** * * *** * *** ****
17474714 CGCCCGCTCACTCGTTTCGTG-TGTTGA-CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
110 CGTCGGAGCA-TCG-CTGGAGAACCTGACCGGCGGCAT-TGGGGTTC-CGACGA-TCGGGGGGGC
* * * * * * * * * * *
17474777 C-AGAGTTCGTTCCCAGTCTAAGATCAGGCCAGACGAAGGGTTACGGCAGCACATGCTGGGCTCG
170 CGGGGGGT-GTGCGCA--C-ATGAT---G--TG-CGATGGG-TGCTG--GTAC-T--T-GGC-C-
* * ** * * *** * * * * * *
17474841 AGCATGTGCTGGTGCCAC-ATTTTTCTTC--ATCT-G-G-GCAC-CATCGCC----AGAGCATCG
216 --CTTATATTGG-CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT--
** ** * * * **** * ****
17474895 CCAGAGAACCTGACTGATGGTATTGCGGTTCC-G-A-CGATCGGGGCGGTC-G----GGGGGGTG
276 -TTGAG-ATTTTAC--A-GGT-TTGC--TGCCAGTAGCCATTAAAG-TGTCTGAAATGGGGACAC
***** * **** * * *** * * ****** * * *
17474952 TGCGCACATAATGGGTGA-TGGGTGCTGGT--ACTTGGCCCTTATA-TTG--GCCCCCTATCCCT
332 TTTTTTCA-AAT-GGTCACAAAAT-CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* ** * ** * **** * ***
17475011 --CATCAAACCT-CAAGAACTCACACCCCCTTA-AAGAGCATTTGGGATTTTACAGGTTTGCTAC
394 GCCAACAAAAATACAAGGA-T--CA-CGTC-TACCA-AG--TTTGGG-GCCAAAACCCTT-C--C
* ** **** *** ** ** * ** ** ** * *
17475072 TAGTAGCCATTAAAGTGTCT-GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTTGTACA
447 AAAAAAATTTTAAAAAATCTCG-AACCGTAAAAAGTTTTAAAAATCATGA-AAAA---TAG-A-A
** * ** *** * * * * ** * ** * * *
17475136 CCTCGAGT--TTTTAG-C-TGAATTTTTTTGTGCATGC-CAA--CAAAAATACAAGGA--T-CAC
505 -AACGAGTCGTCTT-GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* ** * * * * ** ** ** * *
17475191 GTC-TACCAA--G-TTTGG--GGCTA-AAACTCCTTCCGAAAAAAT-TTTAAA-AAATCT-CAAA
568 GCCATAAAAATGGCATTGGCACGC-AGAAA-T--AT--GAAGATGTGCCTAAACCCACCTAC-CA
* ** * ** *** ***** * **** ** *
17475246 CCGTA---A---AAAG-TTTCAAAAATCGTGAAAAATAGAAAACG-AGT---CGTCTTGCCATGA
626 CCCTATCGATCCACGGCTTGCGCATCCCGT-CTCTCTGGCCGGCGTAGTGCCCG-CCCGCC-CG-
** * ** * * ** * * * * * **
17475300 AAC--TTC-ACGTGAAGGCTTAAGGGAGA-ATAGTATGAATTGACAAGCCATAAAAAT-GGCATT
687 CTCGTTTCGTCG-GTTGGCTT-AGGCATACGGAGT-T-CATT-CCCAGTC-T-AAGATCGG-ACC
* **** * * * * * * ****** * * *
17475360 GGCACAC-AAAAATA-TGAAG-ATGTTC--CTA-AACCCA-CCTACCACCCTATCGATCCACGGC
744 AG-AC-CGAGGGTTACGGCAGCAGGATCGGC-AGCACGCAGAGGGGGACCCGACCGATCCTCGGC
* * * * * * * * *
17475418 TTGCGTATCCC-CTCCCTCTGGCCTGCGTAGTACCCGCCCGCCCACTTGTTTCATCGGTTGGCTT
806 TTGCGCATCCCGC-CCCTCTGGCCGGC-T-G-A-GCGCCCGCACGCTCGTTTCGTGGGTTGACTT
* *
17475482 AGGCATACAGAGTTCATTCCTAGTCTAA
866 AGGCATACGGAGTTCATTCCCAGTCTAA
* ** * ** *** **
17475510 GATCCGACTGGACCGAGGGTTGC-GGCAGCAGGATCGGCAGCATGCAGAGGGGGACCCGGTCGAT
1 G---C-A-T--A-CG-GAGTT-CATTC-CCA-G-TC-TAAG-AT-C-GAATCGGACGAGG--G-T
* * * **** * * *** *
17475574 CCT-CGGCTTGCGCATCCCACCCCTCTGGC-CG-GCTGAGTGCCCGCA-CGCTCGTTTCAT-GGG
46 --TGCGGC-AGCACAT-GCTGGGCTCGGGCATGTGCTG-GTG-CCGCATTTTTC--TTCGTCGGG
* * * * * * *** * * * ***** * *
17475634 TTG-ACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCAT-A-CGGAGTTCATTCCCAAT-CTAA
103 --GCAC-CA-TCGT-CGGAG--CA-TCGCTGGAGAA-CCTGACCGGCG-GCATTGGGGTTCCGAC
** * *** * * ** *
17475695 GATCGGCCTGGACCCATGGTTGTGGCAACACATTCTAG-GCTCGA-GCATGTGCTGGTGTAGCAT
158 GATCGG-GGGGGCCGGGGGGTGT-GC-GCACATGAT-GTG--CGATG--GGTGCT-G-GTA-C-T
*** ** * ** * * * * * * ** *** ** *
17475758 T-TTTCTT-CGTCGGGACACTAT-CGTCGGAGC-ATCGTCGGAGAACCTGAC-CGGCGGCATTGT
211 TGGCCCTTATATTGGCCCCCTATCCCTC--ATCAAACCTC-GAGAA-CTCACACCCCCTTAAAGA
* **** * * * * ** *
17475818 G-GTTTCGACGATCGGGGGGCCGGGGGGGTGTGC-GCACATGATGTGCGA-T-GGGTG-CTGGTA
272 GCATTT-GA-GAT----TTTAC----AGGTTTGCTGC-CA-G-T-AGCCATTAAAGTGTCT-GAA
* * * * ** ** * ** * * **
17475878 CT-TGG-CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCTC--CTTAAA
322 ATGGGGACACTT-T-TT----TCAAAT-GGTCA-CAAA-ATCTTG---T-ACACTTCGAGTT-TT
* * ** ** *
17475939 GAGCAATTGAGATTTTACAAGTT-TGC-TGCCAGTAGCCATTA-AA-G-T---GTCTGA--AA--
373 TAGC---TGA-ATTTT----TTTGTGCATGCCAACA-AAAATACAAGGATCACGTCT-ACCAAGT
* ***** * * ** * * * * ***
17475992 -TGGGGAC-ACTTTTTTCAAATGGTTACAAAATCTTGTACACT-TCGAGTTTTTAGC-TGAATTT
428 TTGGGGCCAAAACCCTTCCAA-----A-AAAATTTTAAAAAATCTCGA------ACCGTAAAAAG
**** ** * **
17476053 TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACGAAGT-TTGGGGCCA--AAACTCCTT
481 TTTTAAAAAT--CATGAAAAATAGAA--A--ACG---A-GTCGTCTT---GCCATGAAA---CTT
** *** *** ** ** * ** *
17476115 C-CGAAAAAATTTTAAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
530 CACG-TGAAGGCTT-AAGGGA-CC---ATTGTATGAA-TTT-ACAAGCCAT-AAAAAT-G---GC
* * ** * * ** *** ** * * *
17476179 GAGTCGTCTTGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCATA
582 -A-TTGGCACG-CA-G-AA-AT-A--TGAA-G---ATGTG-CC--TAAACCCACCTACCACCCT-
* * * * * * ** *
17476244 AGAATGGCATTGCCAC-GCAAAATTATGAAG-ATGTACC-TAAACCCACCT-ACCACCCTATCGA
630 ---ATCG-A-T-CCACGGC-----T-TG-CGCA--TCCCGT---CTC-TCTGGCCGGCGTA--G-
* ** ** * * * *** * * * *
17476305 TCCACCGCTTGCGCATCCCGTTTC-TCGATCGG-TGTAGTGTCCGCCCGCCCGCCCGCTCGTT-T
673 TGC-CCGCCCGC-CCGCTCGTTTCGTCGGTTGGCT-TAG-G--CATACG---G--AGTTCATTCC
** * * * * * * *
17476367 C-GTCGGTTGGCTTAGG--CATA-CG-GAGTTCATTC-CCAGTCTAAGATCAGACCAG-AC-CA-
727 CAGTC--TAAG-ATCGGACCAGACCGAGGGTT-A--CGGCAG-C-AGGATC-G-GCAGCACGCAG
* * * ** * ** **** * * ** * *
17476423 AGGGTTGTG-GCAGTA-GGATCAACAGCACGCAG-AGGGGGACTCGACTGATCCCCGACTTGCGC
782 AGGG--G-GACCCG-ACCGATCCTCGGCTTGC-GCATCCCG-C-C-CCT-CTGGCCGGC-TGAGC
* * ** *** * * * * ** * *
17476485 ATCCCGC-CCCTC-TGGCCAGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGAATTAGGCATACG
837 -GCCCGCACGCTCGT-TTC-G-TG-G--GTTG-AC-TTAG--GCATACG--GAGTT---CATTC-
17476548 ATGTTCATTCCCCA-TCTAA
885 -----------CCAGTCTAA
* * * * **
17476567 GCATACGGAGTTCATTCCTAGTCTAAGATTGGATAGGACCGAGGGTTGCAACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGA-CGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * *
17476632 ATCGAGCATGCGCTAGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCG-TCAGAG
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCT-GGAG
* ** * *
17476696 AACCTGACCGACGGTGTTGGGGTTTCGATGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
129 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* **
17476761 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCGAATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
17476826 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
17476891 GGGGACACTTTGTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTTGCTGAA-TTTTTTA
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* **
17476955 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGCCTTCTGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-CCTTCCAAAAAA
* * * *
17477020 ATCTTAAAAATTCTCGAACCGTAAAAAGTTTAAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
453 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * *
17477085 TCCATGAAACATAACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* **
17477150 TTGGCATGCAGAAATATGAAGATGTGCCCGAACCCACCTACCACCCTATCGATCCACGGCTTGCG
583 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
17477215 CATCCCGTAC-CTCTAGTCGGCGTAGTGCCTGGCCGCCCTCCGCCCACTCGTTTCATCGGTTGGC
648 CATCCCGT-CTCTCTGGCCGGCGTAGTG-C---CCG--C-CCGCCCGCTCGTTTCGTCGGTTGGC
* * * *
17477279 TTAGGCATACGAAGTTCATTCCCAGTC-----T-----------GAGTGTTGCGGCAGCAAGATC
705 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGGATC
* * * * * *
17477328 GGTAGCATGCAGAGGGGGACCC-AGCCGGTCCCCGGCTT-CTGCATCCAGCCCCTCTGGCCGACT
770 GGCAGCACGCAGAGGGGGACCCGA-CCGATCCTCGGCTTGC-GCATCCCGCCCCTCTGGCCGGCT
* * * * * * *
17477391 GAGCACCCGCACGCTCATTTCATTGGCTAACTTAGGCATACGAAGTTCATTCCCAGTCTAA
833 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
17477452 G-AT-CGGA---C--T----G-----GA-C----C--A--AGGGTTGTGGCAGCACATACTGGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGACGAGGGTTGCGGCAGCACATGCTGGGC
* ** ** * * * *
17477492 TCGGCCATGTGCTGGTGTAGCATTTTTCTTCACCGGAGCACCATCGCCAGAGCATCGCCGGAGAA
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCTGGAGAA
*
17477557 CTTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGTGTGCGCACATGATGTGCG
131 CCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* * * * *
17477621 ATGGGTTCTGATACTTGGCCCTTATATTGTCCCCCTATCACTCACCAAACCTCGAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
** *
17477686 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTTTTAAAGTGTCTAAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
17477751 GGACACTTTTTTCAAACGATCACAAAATCATGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * * * **
17477816 CATGCCAA-ACAAAATACAGGGATGACGTTTACCAAGCTTGGGGCCAAAACTTCTTCTGAAAAAA
391 CATGCCAACA-AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-CCTTCCAAAAAAA
* * * *
17477880 TTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTCTTG
454 TTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
17477945 CCATGAAACTTCACGTGAAGGCTTAAGGGAGCATTGTATGAATTTACAAGCCATAAAAATGGCAT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*** * * * *
17478010 TGGCATATAGAAATATAAAGATGTTCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGTGC
584 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* ** * *
17478075 ATCCCCTCTCTCTGGCCTACGTAGTGCCCGCCCGCCCGCCCGTCCACTTGTTTCGTCAGCTGGCT
649 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG--C-T---C--GTTTCGTCGGTTGGCT
* * * * *
17478140 TAGGCATACGGAGTTCATTGCCAATCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCG
706 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGGATCG
* * ** *
17478205 GCAGCACGTAGAGGGGGACTCGGTCGATCC-CTGGCTTGCGCATCCCACCCCTCTGGCCGGCTGA
771 GCAGCACGCAGAGGGGGACCCGACCGATCCTC-GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* *
17478269 GTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
835 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
17478328 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGATGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGA-CGAGGGTTGCGGCAGCACATGCTGGG
* **
17478393 CTCGGGCATGTGCTGGTGCAGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCG-TAGGAG
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCT-GGAG
* * * * * *
17478457 AACCTGACTGGCGGTATTGTGGTTTCGGCGATCGGGGGGGCCGGGGGGCTGTACGCACATGATGT
129 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGG-TGTGCGCACATGATGT
* *
17478522 GCGATTGGTGCTGGTACTTGGCCCTTATAGTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
17478587 CACCCCCTTAAAGAGCAATTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
17478652 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTCTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
17478717 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-CCTTCCAAAAA
* * * * *
17478782 AATTTAAAAAAAATCTCGAACCATAAAACA-TTTCAAAAAACATGAAAAATAGAAAATGAGTCGT
452 AATTT-TAAAAAATCTCGAACCGTAAAA-AGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGT
17478846 CTTGCCATGAAACATT-ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
515 CTTGCCATGAAAC-TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * * * *
17478910 GGCATTGCCATGCA-AAATTATAAAGATGTACCTAAACCCACCTACCACCTTATCGATCCACCGC
579 GGCATTGGCACGCAGAAA-TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* ** * * * *
17478974 TTACGCATCCCGTCTCTCTGGGTGGTGTAGTGTCTGCCCGCCCGGTCGTTTTCGTCGGTTGGCTT
643 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCG-TTTCGTCGGTTGGCTT
*
17479039 AGGCATACGGAGTTTCATTCCCAGTCTAAGATCAGACCAGACC----G--A--G--GCAGGATCG
707 AGGCATACGGAG-TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGGATCG
* * ** * * * * **
17479094 ACAGAACATAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCAACTGAG
771 GCAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * *
17479159 CGCCTGCACGCTCGTTTCGTGGGTTGAATTAGGCATACGGTGTTCATTCCCAGTCTAA
836 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * **
17479217 GCATACAGAGTTCATTTTCCAGTTTAAGATC-AGATCGAATCGAGGGTTGCAACAGCACATGCTG
1 GCATACGGAGTTCA-TTCCCAGTCTAAGATCGA-ATCGGA-CGAGGGTTGCGGCAGCACATGCTG
* * * *
17479281 GGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGA
63 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCTGGA
* * * * * *
17479346 GAACCTGACCGACGGGCGTTGGGGTTTCGATGATC-GGGGAGCCAGGAAGGGTGTGCGCACATGA
128 GAACCTGACCGGC-GGCATTGGGGTTCCGACGATCGGGGGGGCC-GG-GGGGTGTGCGCACATGA
*
17479410 TGTGCGATGGGTGCTGGTACTTGGCCC-TATATTGGCCCCCTATCCCTCATCAAACCTCTAGAAC
190 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
17479474 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGCGTCTC
255 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * *
17479539 AAATGGGG-CACTTTGTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTTGCTGAAGTTT
320 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTT
* * ** **
17479603 TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGCTTGGGGCCAAAACGTATTCTG
384 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-CCTTCCA
* * * * * * *
17479668 TAAAAATCTT-AAAATTCCCAAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTC
448 AAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTC
*
17479732 GTCTTTCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAA
513 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
17479796 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
578 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * * *
17479861 ATGCGTATCCTGTATCTCTAGCCGGCGTAGTGCCTGCCTGTCCCCCACCCGGTCGTTTCGTCGGT
643 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-C--CC-G---CCCGCCCGCTCGTTTCGTCGGT
* * * * * * * * ** *
17479926 TGGCTAAGGCATACAGAGTTCATTCCGAATCTAAGATCGGACTAGACTGAGTGTTGCGATAGCAA
701 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAG
* * * * * * *
17479991 GATCGGTAACATC-CAGAGGGGGACCC-AGCGATCCCCGACTTGTGCATCCAGCCCCTCTGGCCG
766 GATCGGCAGCA-CGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * * *
17480054 ACTGAGCACCCACACGCTCGTTTCGTGGGTTGACCTAGGCATACGAAGTTCATTCCCAGTCTAA
830 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
17480118 G-AT-CGGA---C--T----G-----G---G-A-C---CAAGGGTTGCAGCAGCACATACTGGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGACGAGGGTTGCGGCAGCACATGCTGGGC
* * * * * * * *
17480159 TCGGGCATGTGCTGGTGCCGTAGTTTTCTTCGCCAGAGCACCATCG-CTAGAGCATC-ATCGGAA
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCGCT-GGAG
*
17480222 AACCTGACTGGCGGCATTGGGGTTCCGACGAT---------CGGGGGGTGTGCGCACATGATGTG
129 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * * * *
17480278 TGATGGGTGCTGGTACTTGGCCCTTATATTGTCTCCCTATCACTCATCAAACCTCGAGCACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
17480343 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
17480408 GGGGACACTTTTTTCAAACGATCACAAAATCATGTACACTTCGAGTTTTTAGCTGAATTTTTTTT
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTT
* * *
17480473 GTGTATGCCAAAAAACAATACAGGGATCACGTCTACCAAGTTTGGGGCCAAAA--C-TCC-----
388 GTGCATGCCAACAAA-AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCTTCCAAAAA
* *
17480530 -----T------TC-CAAACCGTAAAAAGTTTTAAAAAT-AGTGAAAAATAGAAAATGAGTCGTC
452 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCA-TGAAAAATAGAAAACGAGTCGTC
* * *
17480582 TTGCCATTAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** *
17480647 CATTGGCACATAGAAATAGGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
581 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
** * *
17480712 CGCATCCCGTCTCTCTGGCCGATGTAGTCCCCGCCCGCTCGCCCGTTCGTTTCGTCGGTTGGCTT
646 CGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * *
17480777 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGTAGCAAGATTGG
707 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGGATCGG
* * * *** * * *
17480842 CAGAACGTAGAGGGGGACTCGGTTGATCCTCGGCTTACGCATCCTGCCCCTCTGGCTGGCTGAGC
772 CAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * * * *
17480907 GCCCGTACGCTCGTTCCATGGGTTGACTTAGGTATACGGAGTTCATT-CTAGTCTAA
837 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
17480963 GCATACGGAGTTCATTCCCAGTCTAAGATC-AGACCGAACTGATGATTACGGCAGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-ATCGGAC-GAGGGTTGCGGCAGCACATGCTGG
* * ** * **
17481027 GCTCGGGCATGTGCAGGTGTCGCATTTTTCTTCACCGGGGCACCATCGTTGGAGCATCGCCAGAG
64 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCTGGAG
* * * * * *
17481092 AACTTGATCGGCGGCATTAGGGTTCCGACGGTC-AGGGGGCCGGGGTGTGTAG-GCACATGATGT
129 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGT-GCGCACATGATGT
* * * * *
17481155 GCGATGGGTGCTAGTACTTGGCCCTTATATTGGTCCCTTATCCCTCATCAAGCCTGGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * * *
17481220 CACCCCTTTAAAGAGCATTTGAGATTTTACGGGTTTGCTGCCAGTAGCCGTTAAATTGTTTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
17481285 TTGGGACACTTTTTTCTAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGTTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
17481350 GTGCATGCCAAAAAAAATACAAGGATCACGTCCACCAAGTTTGGGGCTAAAA--C-TCC------
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCTTCCAAAAAA
* *
17481406 ----T------TC-C--A----AAGAAGTTTTAAAAAT-AGCGAAAAATAGAAAACGAGTCGTCT
453 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCA-TGAAAAATAGAAAACGAGTCGTCT
*
17481453 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* ** * *
17481518 TTTGGCACATAGAAATAGGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGC
582 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * * * * *
17481583 GCGTCCCATCTTTTTGGCTGGCGTAGTGCCTGCCCACCCGCCCTCTCATTTTGTCGGTTGGCTTA
647 GCATCCCGTCTCTCTGGCCGGCGTA--G--TGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * * * * * *
17481648 GGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAAGATTACGGCAGCAAGATTGGT
708 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGGATCGGC
* ** * * * ***
17481713 AGCACACAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCGTCCCTCTGGTAAGCTGAGCG
773 AGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * * *
17481778 CCCGTACGGTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATT-CCAGTCTAA
838 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
17481833 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGATGGTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGA-CGAGGGTTGCGGCAGCACATGCTGGG
* *
17481898 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCG-CTGGAGCATCG-TCGGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCGCT-GGA
* * * * * **
17481961 -AACTTGATCAGCGGCATTAGTGTTCCGACGATCCAGGGGGCCAGGGGGAGTGTGCGCACATGAT
128 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGG-GTGTGCGCACATGAT
* * * * *
17482025 GTGCAATGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATACCTCATCAAACCTGGAAAACT
191 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
17482090 CACACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGCGTTTGA
256 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
17482155 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTT
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
*
17482220 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAA
386 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-CCTTCCAAA
* * * * *
17482285 AAAATTTTAAAAAATCTTGAACCATAAAAAGTTTAAAAAATCGTGAAAAATAGAAAATGAGTCGT
450 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGT
*
17482350 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
515 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * * *
17482415 TCATTGGCACACAGAAATATGAAGACGTGCCTAAACTCACCTACCACCCTATTGATGCACGGCTT
580 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
** ** * * * * * * *
17482480 ATGCATCTTGTCTCTCTGGCAGGTGCAGTGCCCGCCCACCTGTTCATTTCGTCGGTTGGCTTAGG
645 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * ** * ** *
17482545 GATACAGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGTGGCAGCAGGATTGGCAG
710 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGGATCGGCAG
* * * * * *
17482610 CACGCAGTGGGAGACCCGACCGATCCCCGACTTGCACATCCCGCCCCTCTGGCTGGCTGAGCGCC
775 CACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* * *
17482675 CGTACGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
840 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
17482729 G-AT-C---G---A-----A--CT--G---G-A-C---CG-GGGTTTACAGCAGCACATGCTTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGACGAGGG-TTGCGGCAGCACATGCTGGG
* * * *
17482768 CTCGGGCATATGCTGGTGCCGTATTTTTCTTCGCCAGGGCACCA---TC---G---C-C-GGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCTGGAGA
* * * * *
17482822 ACCTGACCGACGGCATTGGTGTTCCGACGATCGGGCGGGTCGGGGGGGTGTACGCACATGATGTG
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGG-GGGGCCGGGGGGTGTGCGCACATGATGTG
* * * * *
17482887 CGAAGGGTGCTGGGACCTGGCCCTCATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
17482952 ACGCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
17483017 GGGGACACTTTTTTCAAATGGACACAAAATCTTGTACAGTTCGAGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
17483082 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGG-CAAAATCCTTTC-GAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGGCCAAAACCCTTCCAAAAAA
* * * *
17483145 ATTTTAAAAAATC-CTGAACTGTAAAGAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCT
453 ATTTTAAAAAATCTC-GAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
17483209 TGCCATGAAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * * *
17483274 ATTGGCATGCAGAAATATGAAGATGTTCCTAAACCCACCTACCACCCTATCGATCTATGACTTGT
582 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
17483339 GCATCCCGTCTCTCTGGCCGACGTAATGCCAGCCCGCCCGCCCGCCTGATCGTTTCATCAGTTGG
647 GCATCCCGTCTCTCTGGCCGGCGT-A-G--TGCCCGCCCGCCCG-C---TCGTTTCGTCGGTTGG
* * ** * ** *
17483404 CTTAGGCATACGGAGTTCATTCCCATTCTAGGATTTGACCAGACCGAAGGTTGTGGCAGCAAGAT
704 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGGAT
* ** ** * * * * *
17483469 CGGCAGCACGTAGAGAAGGACCCGGTCGATCCCCGGCTTGCGCATCCCACCCTTCTGGCCGACAG
769 CGGCAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * *
17483534 AGTGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
834 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
17483594 G-AT-C-G-G---A---CC-G-----GA-C----C--A--AGGTTTGTGGCAGCACATGCTGGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGACGAGGGTTGCGGCAGCACATGCTGGGC
* * *
17483634 TC-GGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCA---TC---G---C-C-GAAGAA
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCTGGAGAA
* * * * * * *
17483687 TCTTACTGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGAGGTGTTTGTGTACATGATGTGC
131 CCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGG-GGGGTGTGCGCACATGATGTGC
* * *
17483752 GATGGGTGCTAGTACTTGGCCCTTATTTTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
17483817 CCCCCTTAAAGAGCATTTGCGATTTTAC-GAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 CCCCCTTAAAGAGCATTTGAGATTTTACAG-GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
** * * * * *
17483881 GCAGACACTATTTTCAAATTGCCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAA-TTTTTTA
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* **
17483945 TGCATGCCAACAAAAATACAATGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGTAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-CCTTCCAAAAAA
* * * **
17484010 ATTTTAAAAAATCCCGAATCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTT
453 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
17484075 GCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
17484140 TTGGCACGCAGAAATA
583 TTGGCACGCAGAAATA
17484156 AGATCGGACC
Statistics
Matches: 13707, Mismatches: 2633, Indels: 2672
0.72 0.14 0.14
Matches are distributed among these distances:
809 2 0.00
810 4 0.00
811 1 0.00
812 1 0.00
813 2 0.00
816 1 0.00
817 4 0.00
818 2 0.00
819 1 0.00
821 1 0.00
822 1 0.00
823 1 0.00
825 1 0.00
827 1 0.00
829 3 0.00
830 2 0.00
831 31 0.00
832 136 0.01
833 49 0.00
834 66 0.00
835 11 0.00
836 17 0.00
837 3 0.00
838 22 0.00
840 54 0.00
841 27 0.00
842 23 0.00
843 6 0.00
844 20 0.00
845 171 0.01
846 111 0.01
847 183 0.01
848 93 0.01
849 29 0.00
850 24 0.00
851 7 0.00
852 8 0.00
853 2 0.00
854 1 0.00
855 4 0.00
856 57 0.00
857 200 0.01
858 210 0.02
859 657 0.05
860 188 0.01
861 88 0.01
862 231 0.02
863 136 0.01
864 782 0.06
865 564 0.04
866 122 0.01
867 152 0.01
868 24 0.00
869 43 0.00
870 641 0.05
871 58 0.00
872 255 0.02
873 84 0.01
874 43 0.00
875 116 0.01
876 172 0.01
877 38 0.00
878 203 0.01
879 38 0.00
880 24 0.00
881 46 0.00
882 30 0.00
883 262 0.02
884 66 0.00
885 59 0.00
886 54 0.00
887 123 0.01
888 141 0.01
889 265 0.02
890 609 0.04
891 448 0.03
892 190 0.01
893 376 0.03
894 681 0.05
895 357 0.03
896 445 0.03
897 165 0.01
898 63 0.00
899 220 0.02
900 96 0.01
901 121 0.01
902 138 0.01
903 22 0.00
904 430 0.03
905 204 0.01
906 5 0.00
907 1 0.00
908 1 0.00
909 5 0.00
910 12 0.00
911 8 0.00
912 3 0.00
913 3 0.00
914 11 0.00
915 14 0.00
916 12 0.00
917 20 0.00
918 14 0.00
919 5 0.00
920 6 0.00
921 6 0.00
922 21 0.00
923 8 0.00
924 8 0.00
925 11 0.00
926 24 0.00
927 22 0.00
928 22 0.00
929 12 0.00
930 23 0.00
931 22 0.00
932 20 0.00
933 26 0.00
934 20 0.00
935 12 0.00
936 6 0.00
937 13 0.00
938 19 0.00
939 9 0.00
940 23 0.00
941 22 0.00
942 21 0.00
943 11 0.00
944 5 0.00
945 8 0.00
946 5 0.00
947 19 0.00
948 11 0.00
949 7 0.00
950 7 0.00
951 3 0.00
952 5 0.00
953 17 0.00
954 17 0.00
955 9 0.00
956 7 0.00
957 12 0.00
958 9 0.00
960 3 0.00
961 4 0.00
962 13 0.00
963 6 0.00
964 7 0.00
965 3 0.00
966 7 0.00
967 7 0.00
968 18 0.00
969 6 0.00
970 6 0.00
971 6 0.00
972 17 0.00
973 19 0.00
974 17 0.00
975 9 0.00
976 6 0.00
977 6 0.00
980 5 0.00
981 4 0.00
982 12 0.00
983 15 0.00
984 8 0.00
985 9 0.00
986 6 0.00
987 2 0.00
988 4 0.00
989 12 0.00
990 15 0.00
991 3 0.00
992 8 0.00
993 29 0.00
994 11 0.00
995 14 0.00
996 25 0.00
997 10 0.00
998 16 0.00
999 29 0.00
1000 43 0.00
1001 16 0.00
1002 15 0.00
1003 6 0.00
1004 7 0.00
1005 14 0.00
1006 9 0.00
1007 9 0.00
1008 17 0.00
1009 12 0.00
1010 11 0.00
1011 14 0.00
1012 17 0.00
1013 9 0.00
1014 3 0.00
1015 10 0.00
1016 14 0.00
1017 3 0.00
1018 4 0.00
1019 5 0.00
1020 9 0.00
1021 31 0.00
1022 31 0.00
1023 13 0.00
1024 255 0.02
1025 310 0.02
1026 279 0.02
1027 470 0.03
1028 303 0.02
1029 241 0.02
1030 294 0.02
1031 316 0.02
1032 358 0.03
1033 252 0.02
1034 182 0.01
1035 238 0.02
1036 222 0.02
1037 187 0.01
1038 206 0.02
1039 261 0.02
1040 262 0.02
1041 169 0.01
1042 260 0.02
1043 237 0.02
1044 201 0.01
1045 244 0.02
1046 243 0.02
1047 208 0.02
1048 135 0.01
1049 121 0.01
1050 105 0.01
1051 118 0.01
1052 218 0.02
1053 96 0.01
1054 97 0.01
1055 261 0.02
1056 109 0.01
1057 91 0.01
1058 82 0.01
1059 157 0.01
1060 238 0.02
1061 100 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (893 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGACGAGGGTTGCGGCAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCTGGAGAA
CCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCTTCCAAAAAAATT
TTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGGATCGGCAGCACGCA
GAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:17468355 original size:864 final size:861
Alignment explanation
Indices: 17463824--17473525 Score: 9993
Period size: 894 Copynumber: 11.0 Consensus size: 861
17463814 TAAGCATATA
* * * * * *
17463824 GAGTTCATTGCCAGTCTAAGATTGGATCGGACC-AAGGTTGCGACAGCACATGCTGGGCTCGGCC
1 GAGTTCATTCCCAGTCTAAGATAGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
** ** * *
17463888 ATGTGCTGGTGCC-CATTTTTCTTCGTCGGGGCACCATCACCTTAGCATCATCGAAGAACCTGAC
66 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGAC
* * * *
17463952 CGGTGGCATTGGGGTTTCGACGATCGAGGGGGGCGGGGGTGTGTG-CACATGAATGTGCGATTGG
131 CGGCGGCATTGGGG-TTCCACGATCG-GGGGGCCGGGGG-GTGTGCCACATG-ATGTGCGATGGG
* ** *
17464016 TGCTGATACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAAAATAAGAACTCACA-CCCCTT
192 TGCTGGTACTTGGCCCTTATATT-GGCCCCTATCCCTCATCAAACCTGAGAACTCACACCCCCTT
*
17464080 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGGGACAC
256 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * * * *
17464145 TTTTTTTCAAATGGCCACAAAATCTTGTACATTTTGAGCTTTTAGCTGAATTTTTTTTTGCATTG
321 -TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA-TG
* * * *
17464210 GC-ACAAAAAATACAAGGATCACGTCTACGAAGTTTGGCGCCAAAACTCATTCCAAAAAAATTTT
384 CCAAC-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTT
* * * * * * *
17464274 AAAAAATCCCGAATC-TCAAAAAGCTTCAAAAATCGTGAAAAATAGAAAATGAGTCATCTTGCCA
448 AAAAAATCTCGAACCGT-AAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
17464338 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
512 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* *
17464403 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAACCACGGCTTGCGCATC
577 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * *
17464468 CCGTCTCTCTGGTCGGCATAGTGCCCGCCAGCTCGCCCGCCTGCTCGTTTCATCGGTTGGCTTAG
642 CCGTCTCTCTGGCCGGCGTAGT--------GC-CGCCCGCC-GCTCGTTTCGTCGGTTGGCTTAG
* * * * **
17464533 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCG-GCAGCAGGATCGAT
697 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA-CGAGGGTTGCGAGCAGTAGGATCGGC
* * * * * * *
17464597 AGCACGCAGAGGTGGACCTGGCCGATCCCCGGCTTGCGCATCTCGCCCTTCTGGCCGACTAAGCG
761 AGCACGCAGAGGGGGACCCGGCCGAT-CCCTGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* *
17464662 CCCGCACGCTCATTTCATGAGTTGACTTAGGCATACAAAGTTCATTCCCTGACTAAGCATACG
825 CCCGCACGCTCGTTTCGTG-G--G--TT--G---AC----TT-A------G-----GCATACG
* * *
17464725 GAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGC
1 GAGTTCATTCCCAGTCTAAGATAGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * * * **
17464790 ATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCAGAGCATCGCTAGAGAACCTGAC
66 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGAC
* * * * * * *
17464855 CGACAGCATTGGGGTTTCGACGATCGAGGGGGCTGGGGGGTTGGAGTGTGCACATGTTGTGAGAT
131 CGGCGGCATTGGGG-TTCCACGATCG-GGGGGCCGGGGGG-T---GTG-CCACATGATGTGCGAT
17464920 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCC
189 GGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACC-TGAGAACTCACACCC
* *
17464985 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGT
252 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * * * *
17465050 ATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGACTTTTTAGGTTAATTTTTTTGTGCA
317 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* ** * * *
17465115 TGCCAACAAAAATACAAGGATCACATCGGCTAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTT
382 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTT
* * * *
17465180 TAAAAAATCTTGAACC-TCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGACGTCTTGCC
447 TAAAAAATCTCGAACCGT-AAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* * * * *
17465244 GTTAAACTTCACGTGAAGGCTTAACGAACCATTGTATGAATTTACATGCCATAAAAATGGCATTG
511 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * *
17465309 GCAGGCAGAAATAAGAGGATGTGCCTAAACCCACCTGCCACCCTATCGATCCACGGCTTGCGCAT
576 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* *
17465374 CCCGCCTCTCTGACCGGCGTAGTGTCCGCCCGCCCCCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
641 CCCGTCTCTCTGGCCGGCGTA--GT--G-CCG----CCCG-CCGCTCGTTTCGTCGGTTGGCTTA
* ** * * *
17465439 GGCATACAGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTGCGA-TAGCAGGATCGG
696 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA-CGAGGGTTGCGAGCAGTAGGATCGG
* * * ** * *
17465503 CAACACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCTAGCCCGTCTGGCCAGCTGAGC
760 CAGCACGCAGAGGGGGACCCGGCCGAT-CCCTGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
*** *
17465568 GCCCGCACGCTCGTTTTACGGGTTAACTTAGGCATACG
824 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * * * * *
17465606 GAGTTCATTCCCAGTCTAAGATCGAATCGGACTGAGGGTTGTGGCAGCACATGCTTGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATAGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * ** * ***
17465671 ATGTGCTGGTGCCACATTTTTCTTCGCCAAGGCACCATCGCCGGAGCATTGTCGGAGAACCTGAC
66 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGAC
* * *
17465736 CAGCGGCATTGGCGTTCCGACGATCGGGGGGGCCGGGGGGGTGGTGTGCGCACATGATGTACGAT
131 CGGCGGCATTGGGGTTCC-ACGATC-GGGGGGCC---GGGG-GGTGTGC-CACATGATGTGCGAT
* * *
17465801 GGGTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTTGAGAACTCACAGCC
189 GGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACC-TGAGAACTCACACCC
** *
17465866 CCTTTGAGAGCATTCGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-ATAATGGG
252 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA-AATGGG
**
17465930 GACACTTTTTTCAAATGGTCGTAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
316 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
*
17465995 ATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAC-CCTTTCCAAAAAAAT
381 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCAAAAAAAT
* * *
17466059 TCTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
445 TTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* * *
17466124 CATGAAAGTTCA-GTGAAGGCTTAAGGGACCATTGTATGAATTTACAA-CAATAAAAATGGCGTT
510 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
17466187 GGCATGCAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACGGCTTGCGCA
575 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* *
17466252 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTTGTTTCATCGGTTGGCTTAGGCATAC
640 TCCCGTCTCTCTGGCCGGCGTAGTG-CCGCCCG-CCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * ** * * * *
17466317 GGACTTCATTCCCAGTCTAAGATCGGACCAGACTGAGCGTTATG-GCAGCAAGATCAGTAGCACG
703 GGAGTTCATTCCCAGTCTAAGATCGGACCAGAC-GAGGGTTGCGAGCAGTAGGATCGGCAGCACG
** ** * *
17466381 CAGAGGGGGACCCGATCGAT-CCTCGACTTGCGCATCTTGCCCCTCTAGCCGGCTGAGCGCCTGC
767 CAGAGGGGGACCCGGCCGATCCCT-G-CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
* *
17466445 ACGCCCGTTTCATGGGTTGACTTAGGCATACG
830 ACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* *
17466477 GTGTTCATTCCCAGTTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAATTGGACTGAGGGT
1 GAGTTCATTCCCAGTCTAAG-ATA--G-G---A---CC-G-----GA-C--------C-GAGGGT
* * *
17466542 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCACTTTTATTCGCCGGGGCACCATC
40 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
* ** *
17466607 GTCGGAGCATCGCTAGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCGGAGG
105 GTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCC-ACGATC-GGGGGGCCGG-GG
* *
17466672 GGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTA
167 GGTGTGC-CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCA
* * * *
17466737 TCAAACCTCCAGAACTCACACCCCCTCAAAAAGCATTTGAGATTTTACAGGTTTGCTCCCAGTAG
230 TCAAACCT-GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
*
17466802 CCATTAAAGTGTCTGAAATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
294 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * * * **
17466867 TTTTACCTGAATTTTTTTGTGCATGCCAAAAAAAATGCAAGGATCACGTCTGCCAAGTTTGGGAT
359 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * *
17466932 CAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGGAAA
424 CAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAA
17466997 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
489 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* *
17467062 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCC
554 ACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * *
17467127 TATCGATCCACGGCTTGCGCATCCCGTCTTTCTAGTCGGCGTAGTGCCCGCCCGCCCCCGCCCTC
619 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CCGCCCG---CCG--CTC
* * * *
17467192 GTTTCATCGGTTTGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACGA-GG--
678 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACGAGGGTT
* * *
17467254 GCG-GCAGTAGGATC-GCA--A-G-AGA--GGGACCC-GACGATCCCCAGCTTGCG-ATCCTGCC
743 GCGAGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGAT-CCCTGCTTGCGCATCCCGCC
* * *
17467309 CCTCTGGCC-GCTGA--G-CCGCACGCTAGTTTCGTGTGTTGACTTAAGCATACG
807 CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
** ** *
17467360 GAGTTCATT-CCAGTTCTAAGATCGATCACCAGTCTAAGTGCGAAAAGGGTT-CGACAGCACATG
1 GAGTTCATTCCCAG-TCTAAGAT--AGGACC-G-----GACCG---AGGGTTGCGGCAGCACATG
* *
17467423 CTGGGCTCGGGCATGTGCT-GTGCC-AATTTTTCTTTCGTC-GGGCACCATC-TCGGAGCATTCG
54 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC-TTCGTCGGGGCACCATCGTCGGAGCA-TCA
*
17467484 TCGGAGAACCTGA-CGGCGGCATTGGGG-TCCACGATC-GGGGGCCGGGGGGTGTGCCACAATGA
117 CCGGAGAACCTGACCGGCGGCATTGGGGTTCCACGATCGGGGGGCCGGGGGGTGTGCCAC-ATGA
* *
17467546 TGTGTGATGGGTGCTGGTATTGTGGCCGCTTATTATTGG-CCCTAATCCCTTCATCAAAACCTGA
181 TGTGCGATGGGTGCTGGTACT-TGGCC-CTTA-TATTGGCCCCT-ATCCC-TCATC-AAACCTGA
*
17467610 GAAACTCATCA-CCCCTTAAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAT
240 G-AACTCA-CACCCCCTT-AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
*
17467674 GTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
302 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* *
17467739 GAATTTTTTTGTGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGAGCCAAAACTC
367 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* * *
17467804 CTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAGTCATGAAAATTAGAAAA
432 CTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAA
* *
17467869 CGAGTCGTCTTCCCATGAAACTTCACGTGTAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
497 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* *
17467934 TAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCAATCGATC
562 TAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * *
17467999 CACGGCTTACGCATCCCGTCTCTCTGGCCGACGTAGTG-C-CCAGCCTCTCGTTTCGTCGGTTGG
627 CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCGCCCGCCGCTCGTTTCGTCGGTTGG
* * *
17468062 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAATCAAGGGTTGCGAACA-TAGGA
692 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA-CGAGGGTTGCGAGCAGTAGGA
* * *
17468126 TCGGCAGCACACAGAGGGGGACCTGGCCGATCCCTGATTG-GCATCCCGCCCCTCTGGCCGGCTG
756 TCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCTGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* *
17468190 AACGCCCGCACGCTCGTTTCGTGCGTTGACTTAGGCATACG
821 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* *
17468231 GAGTTCATTCCCAGTCTAAGATAGGACCGGACCGAGGGTTGTGGTAGCACATGCTGGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATAGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
**
17468296 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGGAGCATCACCGGAGAACCTGA
66 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCACCGGAGAACCTGA
* * * **
17468361 CCGAC-GCATTGGGGTTCCAGCGATCGGGGGGCCGGGGGGTGTGTGCGCATGATGTGCGATGCCT
130 CCGGCGGCATTGGGGTTCCA-CGATCGGGGGGCCGGGGGGTGTG-CCACATGATGTGCGATGGGT
17468425 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
193 GCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCT-GAGAACTCACACCCCCTT
*
17468490 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTATGAAATGGGGACAC
256 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
17468555 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATTTTTTTGTGCATGCC
321 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
*
17468619 AA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCGAAAACTCCTTCCAAAAAAATTTTAAA
386 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAA
17468683 AAATC-CAGAACCGTAAAAAGTTTT-AAAATCATGAAAAATAG-AAA--A-----------ATGA
451 AAATCTC-GAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
17468732 AACTTCACGTGAAGGCTTAAGGGACCATTCGTATGAATTTTACAAGCCATAAAAATGGCATTGGC
515 AACTTCACGTGAAGGCTTAAGGGACCATT-GTATGAA-TTTACAAGCCATAAAAATGGCATTGGC
* *
17468797 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTA-CACCCTATCGATCCACGGCTTGCGCATCT
578 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
17468861 C-TCTCTCTGGCC-GCGTAGTGCTCGCCCGCCCACCGCTCG-TTCGTCGGTTGGCTTAGGCATA-
643 CGTCTCTCTGGCCGGCGTAGTGC-CGCCCG----CCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * * * *
17468922 TGAGTTCATTCCCAGTCTAAAATCAGACCGGA-AAGGGTTGCG-GTAGCAGGAT--GCAGCACGC
703 GGAGTTCATTCCCAGTCTAAGATCGGACCAGACGAGGGTTGCGAGCAGTAGGATCGGCAGCACGC
* *
17468983 AGAGGGGGA--C--CCGATCCCTGCATT--GCATCCTGCCCCTCTGG-CGGCTGA--ACCCGCA-
768 AGAGGGGGACCCGGCCGATCCCTGC-TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* *
17469038 -CTCGTTTTCGT-GATTCACTTA-GCATACG
832 GCTCG-TTTCGTGGGTTGACTTAGGCATACG
* * *
17469066 GAGTTCATT-CCAGTCTAAGATCA-GACTGG--CGAGGGTTGTGGTAGCACATGCTGGGCTCGGG
1 GAGTTCATTCCCAGTCTAAGAT-AGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
*
17469127 CATGTGGCTGGT-CTGCATTTTTCTTCGTCGGGGCACCCATC-TCGGAGCACTCACCGGAGAACC
65 CATGT-GCTGGTGCCGCATTTTTCTTCGTCGGGGCA-CCATCGTCGGAGCA-TCACCGGAGAACC
* **
17469190 TGA-CGGCGGCGTTGGGGTTCTGCGATCGGGGGGACC-GGGGGT-TGCCTCACATGATGTGCTGA
127 TGACCGGCGGCATTGGGGTTCCACGATCGGGGGG-CCGGGGGGTGTG-C-CACATGATGTGC-GA
* * *
17469252 TTGGTGCTGGTACTTGTCACCTTCATATTGGCCCCCAATCCCTCATCAAACCTTGA-AGACTCAC
188 TGGGTGCTGGTACTTGGC-CCTT-ATATTGG-CCCCTATCCCTCATCAAACC-TGAGA-ACTCAC
*
17469316 A-CCCC-TAAAGAGCATTTGAGATTTTACAGGCTTTGCTGCCAGGTAGCCATT-AACTGTCTTGA
248 ACCCCCTTAAAGAGCATTTGAGATTTTACAGG-TTTGCTGCCA-GTAGCCATTAAAGTGTC-TGA
*
17469378 AAT-GGGACACTTTTTTCAAAATGGTCACAAAGATCTTGTACACTTTCGAGTTTTTAGCCTGAAA
310 AATGGGGACACTTTTTTC-AAATGGTCACAAA-ATCTTGTACAC-TTCGAGTTTTTAG-CTGAAT
* * *
17469442 TTTTTTATGGATGCCAACAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTT
371 TTTTTTGTGCATGCCAAC-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * * *
17469507 CCAACCAAAAATTTCT-AAAAATCCCGAACCGCAAATAAAG-GTTGAAAATCATGGAAAAATAGA
435 CCAA--AAAAATTT-TAAAAAATCTCGAACCG-TAA-AAAGTTTTAAAAATCAT-GAAAAATAG-
*
17469570 AAAACGGAGTCGTCTTGCCAATGAAACATTCCACGTCGTAGGCTTAAGGGACCATTGTATGAATT
493 AAAAC-GAGTCGTCTTGCC-ATGAAAC-TT-CACGT-GAAGGCTTAAGGGACCATTGTATGAATT
17469635 TACAA-CCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC-CC
553 TACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
** * *
17469698 CTATCGATCCA-GGCTTGACGCAT-CCGTCTCTATCT-GCCGAAGTAGTGCCG-CCGCCGCCCAC
618 CTATCGATCCACGGCTTG-CGCATCCCGTCTC--TCTGGCCGGCGTAGTGCCGCCCGCCGCTC-G
* * *
17469759 TTTCGTCTTTCAGTGTT-GCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCAGA-CTGACAA
679 TTTCG----TC-G-GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACGA
* *
17469821 GGGTTGC-AGCAGCAGGATCGGCAGCATGCAGAGGGGGA-CCGG-CGAT-CCTGC-TGC-CAT-C
738 GGGTTGCGAGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCTGCTTGCGCATCC
* ** * *
17469879 CG-CCCT-TTG--GTTTGAGCG-GCACACGCTCG-TTCGTGGGTTGAC-TAGGCATACG
803 CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * * * * * *
17469931 GAGTTCATTCAGTCTAAGCGTACGAAGTTCATTCCCATCTAAGATCGGCACTGGAACCGGTTGCT
1 GAGTTCATTC---C-CA--GT-CTAAG---------A--TAGGACCGG-AC-CG-A-GGGTTGCG
* *
17469996 GCAGCACATGCTGGGCTCGGGCATGTGC-GGTGCC-CGTATTTTCTTCGTCGAGGCACCATCGAT
44 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT-TTTTCTTCGTCGGGGCACCATCG-T
* * **
17470059 C-GAGCGT-ACCGGAGAACCTGACCGACGGGCAGTT-GGGTTCCAACGATCGGGCGGGGCCCAGG
107 CGGAGCATCACCGGAGAACCTGACCGGC-GGCA-TTGGGGTTCC-ACGATC-GG-GGGGCCGGGG
* * * **
17470121 GATG-GCCTGCGCATGATGTGCAATGGGTGCTGGTACTTATCCCTTATATTGGCCCCCTATCCCT
167 GGTGTG-C--CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCT
* * * *
17470185 CATCAAAGCTCGAGAAATCACACCCCCTTAAAGAGCATTTGAGATGTTACAGGTTTACTGCCAGT
228 CATCAAACCT-GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
*
17470250 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGT
292 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* *
17470315 G-TTTTAGCTGAATTTTTTTATGCATGCCAACAAATATACAAGGATCACGTCTA-CAAGTTTGGG
357 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
** * * * * *
17470378 GCCAAAACTTTTTCC-AAAAGATTTTAAAAAATCCCGAACTGAAAAAAGTTTTGAAAATCATGAA
422 GCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCATGAA
*
17470442 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATCAAT
487 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* * * * *
17470507 TTACAAACCGT-AAAATGGCATTGGCACACAGAAATATGAAAATGTGCCTAAA-GCACCTACCAC
552 TTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * ** *
17470570 CTTATTGATCCACGGGCTTGCGCATCTTGTCTCTCTGGCCGGCGTAATGCCCCACCGCCCGCCCG
617 CCTATCGATCCAC-GGCTTGCGCATCCCGTCTCTCTGGCCGGCGT-A-G------TG-CCGCCCG
* * * * *
17470635 CCCGCTCATTTCGTCGGTTGGCCTAGGCATACGGAGTTCCACTCCCAGTCTAAGATTGGACCGGA
672 -CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT-CATTCCCAGTCTAAGATCGGACCAGA
** * ** *
17470700 CCGAGGGTTATG-GCAGTAGGATCGGCAGCACGTAGA-GGGGACCCGATCGATCCCTGGCTTCCG
735 -CGAGGGTTGCGAGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCT-GCTTGCG
* *
17470763 CATCCCGCCCCCCTGGCCGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACG
798 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
17470827 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTACGATCGGATCGGACCGAGGGT
1 GAGTTCATTCCCAG--T---C-TA---AG---A-T---AG-----GA-C----CGGACCGAGGGT
* * * **
17470892 TGCGGTAGCACATGCTGGGCTCGAGCATGTGCTGGTTCCGCATTTTTCTTCACCGGGGCACCA--
40 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
* *
17470955 -TC---GC--CA---GAGAACCTGACCGGTGGCATTGGGGTTCCGACGATCGGCGGGGTCGGGGG
105 GTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCC-ACGATCGG-GGGG-CCGGGG
*
17471011 GGCTGTGCGCACATGATGTGCGATGCGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
167 GG-TGTGC-CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTC
* * *
17471076 ATCAAACCTCAAGAACTCACACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTTCTGCCAGTA
229 ATCAAACCT-GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* *
17471141 GCCATTAAAGTGTCTAAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
293 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* *
17471206 TTTCTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
358 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * ** * *
17471271 CTAAAAATCCTTCTGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAA
423 CCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCATGAAA
* *
17471336 AATTGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
488 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
** * * * **
17471401 TACAAGCCATAAAAATGGCATTGGCACATAGAAATATGACGATGTTCCTAAACACACAAACCACC
553 TACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * **
17471466 ATATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCAACGTAGTGCCCGCCCGCCTGCCCGCC
618 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT--------GCC-GCCCG-C
* * * * *
17471531 CGCTCGTTTTGTCGGTTGGCTTAGGTATACGGAGTTCACTCCCAGTCTAAGATTGGACCAGGCTG
673 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC-G
* * * * * * ** **
17471596 AGGGTTAC-AGCAGCAGGATCGACAGCACGTAGAAGGGGACCCGACCGATCCCCAACTTGTACAT
737 AGGGTTGCGAGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGAT-CCCTGCTTGCGCAT
* * * *
17471660 GCCGCCCCTCTTGG-CGACTGAGCGCCCCGCACGCTCGTTGACTTTGGCATATGGAGTTCATTCC
801 CCCGCCCCTC-TGGCCGGCTGAGCG-CCCGCACGCTC---G--TTT--C--GTGG-GTTGA---C
*
17471724 AGTCTACGCATAC-
851 --T-TAGGCATACG
* * * *
17471737 GAGCTTCATTCCCAGTCTAAG-T-CGATCGGACCGAGGGTTGCGACAGCACATGCTAGGGCTCAG
1 GAG-TTCATTCCCAGTCTAAGATAGGACCGGACCGAGGGTTGCGGCAGCACATGCT-GGGCTCGG
* * * *
17471800 GCATGTGCTGGT-CTGTATTTTTCTTCGTCGAGGCACCATCGTCAGAGCAATGCA---GAGAACC
64 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGC-AT-CACCGGAGAACC
** * * *
17471861 TTGACCGGCGCGTGTTGGGGTTTCGATGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCAA
127 -TGACCGGCG-GCATTGGGG-TTCCACGATCGGGGGGCCGGGGGGTGTGC-CACATGATGTGCGA
17471926 TGGGTGCTGGTACTTGGCCCCGTTATATTGGCCCCCTATCCCTCAATCAAACCTCGAGAACTCAC
188 TGGGTGCTGGTACTTGG-CCC-TTATATTGG-CCCCTATCCCTC-ATCAAACCT-GAGAACTCAC
17471991 ACCCCCTTAAAG-GCAATTTGAGA-TTTACAGGTTTGCTGCCAGTAGGCCATTAAAGTGTCTGAA
248 ACCCCCTTAAAGAGC-ATTTGAGATTTTACAGGTTTGCTGCCAGTA-GCCATTAAAGTGTCTGAA
* *
17472054 AT-GGGACACCTTTTTCAAATGGTCACAAAATCTTGTATAC-TCGAG--TTTAGCTGAATTTTTT
311 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
*
17472115 TGTGCATTGCCAAC-AAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCCAAA
376 TGTGCA-TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAA
* ** * * * *
17472179 AAAACTTTAAAAAATCTCGAAAAGCAAAAGGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
440 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
17472244 CTTGCCATGGAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAA-G
505 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * ** * *
17472308 GACATTGTCACGTAGAAATATGAAGATGTGCCAAAACCCACCTACTGCCCTATCGATGCACGTCT
570 G-CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* ** * * *
17472373 TGCGCATCCCGTCTCTCTGGCCCGTATAGTGCCCACCCGCCCGTTCATTTCGTCGGTTGGCTTAG
634 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CCGCCCG-CCGCTCGTTTCGTCGGTTGGCTTAG
** * *
17472438 GCATACGGAGTTCATTCCCAGTCTAAGATCATACCAGACCAAGGGTTAC--GCTAGTAGGATCGG
697 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA-CGAGGGTTGCGAGC-AGTAGGATCGG
* * ** * * * *
17472501 TAGCACACAGAAAGGGACCGGGTCGATCCTCGGCTTGCGCATCCCGACCCC-CTGGCCGACTGAG
760 CAGCACGCAGAGGGGGACCCGGCCGATCC-CTGCTTGCGCATCCCG-CCCCTCTGGCCGGCTGAG
* * *
17472565 CGCCCGCACCCTCATTTCGTGGGTTGACTTAGGCATACA
823 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
*
17472604 GAGTTCATTCCCAGTCTAAGCATACGAAGTTCAGTCCCAGTCTAAGATCAGACCGGACCAAGCGT
1 GAGTTCATTCCCAGTCTAAG-ATA-G--G---A----C---C---G----GACC-G----AGGGT
* * * ** * * *
17472669 TGCGGCAGCACATGCTAGGCTCGAGCATGAGCTGGTGCCATATTTTTCTCCG-CTAGGGCACCAC
40 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCAT
* * * * ***
17472733 CGTCGGAGCATCACCGAAAAAGCTGACCGACGGCATTGGGGTTTCGGTGATCGGGGGGGCCGGGG
104 CGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGG-TTCCACGATC-GGGGGGCC-GGG
*
17472798 GGTGTGTGCGCACATGATGGGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
166 GG-GTGTGC-CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCT
* *
17472863 TATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG-TTACTGCCAGT
228 CATCAAACC-TGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
*
17472927 AGCCATTAAAGTGTCTGAAATGGGGACCCTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
292 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * *
17472992 GTTTTTAGC-GAAATTGTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGG
357 GTTTTTAGCTG-AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * * * * * *
17473056 GGCCAAAAATCCTTTCGAAAAAATTTTAAAAAATCAT-GAATCGCAAATAGTTTCAAAAATCGTG
421 GGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATC-TCGAACCGTAAAAAGTTTTAAAAATCATG
* *
17473120 AAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGA
485 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
** * *
17473185 ATTTACAAGCCATAAAAATGGCATTCACAAGTAGAAATATGAAGATGTGCCTAAACCCACCTACC
550 ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* *
17473250 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGTGTAGTGCTCGCCCGCCCTCCC
615 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC-CGCCCG------C
* * * *
17473315 GCGCTTTTGTTTCGTCGGTTGGCTTAGGCAGACGGAGTTCATTCCTAGTCTAAGATTGGACC-GA
673 -CGC--TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA
* * *
17473379 GCTGAGGGTTACG-GCAATAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCAGGCTTGC
735 -C-GAGGGTTGCGAGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCC-TGCTTGC
** * * * *
17473443 GCATCTTGCCCCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCGTAGGTTGACTTAGGCATATG
797 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
17473508 GAGTTCATTCCCAGTCTA
1 GAGTTCATTCCCAGTCTA
17473526 TGATGTACAC
Statistics
Matches: 7576, Mismatches: 770, Indels: 907
0.82 0.08 0.10
Matches are distributed among these distances:
830 2 0.00
831 37 0.00
832 130 0.02
833 49 0.01
834 81 0.01
835 29 0.00
836 24 0.00
837 9 0.00
838 22 0.00
840 55 0.01
841 26 0.00
842 23 0.00
843 6 0.00
844 19 0.00
845 69 0.01
846 36 0.00
847 81 0.01
849 27 0.00
850 23 0.00
851 6 0.00
856 56 0.01
857 2 0.00
858 15 0.00
859 47 0.01
860 119 0.02
861 71 0.01
862 225 0.03
863 78 0.01
864 479 0.06
865 142 0.02
866 70 0.01
867 121 0.02
868 26 0.00
869 12 0.00
870 4 0.00
871 230 0.03
872 21 0.00
873 91 0.01
874 20 0.00
875 31 0.00
876 8 0.00
877 18 0.00
878 10 0.00
879 125 0.02
880 58 0.01
881 496 0.07
882 37 0.00
883 245 0.03
884 71 0.01
885 32 0.00
886 32 0.00
887 39 0.01
888 36 0.00
889 71 0.01
890 304 0.04
891 370 0.05
892 144 0.02
893 339 0.04
894 666 0.09
895 183 0.02
896 445 0.06
897 124 0.02
898 8 0.00
899 4 0.00
900 91 0.01
901 56 0.01
902 51 0.01
903 91 0.01
904 175 0.02
905 8 0.00
906 7 0.00
907 449 0.06
908 76 0.01
909 70 0.01
910 4 0.00
911 19 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (861 bp):
GAGTTCATTCCCAGTCTAAGATAGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGAC
CGGCGGCATTGGGGTTCCACGATCGGGGGGCCGGGGGGTGTGCCACATGATGTGCGATGGGTGCT
GGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTGAGAACTCACACCCCCTTAAAGA
GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATC
TCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAA
ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
TGGCCGGCGTAGTGCCGCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
AGTCTAAGATCGGACCAGACGAGGGTTGCGAGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCG
GCCGATCCCTGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
TTGACTTAGGCATACG
Found at i:17470856 original size:26 final size:26
Alignment explanation
Indices: 17470820--17470870 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
17470810 GTTGACTTAG
17470820 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17470846 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
17470871 CGATCGGATC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17472634 original size:26 final size:26
Alignment explanation
Indices: 17472597--17472649 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17472587 GTTGACTTAG
*
17472597 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCAGTCCCAGTCTAA
17472623 GCATAC-GAAGTTCAGTCCCAGTCTAA
1 GCATACAG-AGTTCAGTCCCAGTCTAA
17472649 G
1 G
17472650 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCAGTCCCAGTCTAA
Found at i:17474782 original size:26 final size:26
Alignment explanation
Indices: 17474746--17474798 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17474736 GTTGACTTAG
*
17474746 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
17474772 GCATACAGAGTTCGTTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17474798 G
1 G
17474799 ATCAGGCCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17475673 original size:26 final size:26
Alignment explanation
Indices: 17475643--17475695 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17475633 GTTGACTTAG
*
17475643 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
17475669 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
17475695 G
1 G
17475696 ATCGGCCTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:17475790 original size:897 final size:894
Alignment explanation
Indices: 17473892--17484155 Score: 11843
Period size: 897 Copynumber: 11.7 Consensus size: 894
17473882 GTTGACTTAG
* * * * * *
17473892 GCATACGGAGTTCATTCCCAGTCTAATATCAGACCGTACCAAGGGTTAC-GTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GGCCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
17473956 CTCGGGCAAGTGCTGATGTCACATTTTTCTTCGTCGGGGC-CCAT---C---GC--CG---GAGA
65 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCAGAGA
* * ** * *
17474009 ACCTAACCGGCAACATTGGGGTTCTGACGATCGGAGGGGCC-GGGGGG-GTGCGCACATAATGTG
130 ACCTGACTGGCGGCATTGGGGTTCCGACGATCGG-GGGGCCGGGGGGGTGTGCGCACATGATGTG
*
17474072 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
17474137 ACCCCCTTAAAGAGCATTTGAGGTTTTACAGGTTTACTGCCAGTAGCTATTAAAATGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
17474202 GGGGACACTTTTTTCAAATGGTAACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
17474267 TGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCGAAAACTACTTTCG-AAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* *
17474331 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAACTAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * *
17474396 GCCATGAAACTTCACGTGAAGGCGTAAGGGACCATTGCAAGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
17474461 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
584 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
17474526 CATCCCGCCTCTCTGGCCGACGTAGTGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCAT
* * ** * * * * *
17474591 ATGGAGTTTATTCTTAGTCTAAGATCAGATCAGACCAAGGGTTGCTGCAGCAGGATTGACAGCAC
714 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCAC
* * * * * ** * *
17474656 ACAGAGGGGGA-CCTGACTGATCCTCGGCTTGTGCATCCTGCCCCTCTGGCTGGTTGAGCGCCCG
779 GCAGAGGGGGACCCGGTC-GATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCG
* * * *
17474720 CTCACTCGTTTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
843 CACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * *
17474772 GCATACAGAGTTCGTTCCCAGTCTAAGATCAGGCCAGA-CGAAGGGTTACGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GGCCGGACCG-AGGGTTGCGGCAGCACATGCTGG
* ** * *
17474836 GCTCGAGCATGTGCTGGTGCCACATTTTTCTTCATCTGGGCACCATCGCCAGAGCATCGCCAGAG
64 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCAGAG
** * * * * *
17474901 AACCTGACTGATGGTATTGCGGTTCCGACGATCGGGGCGGTCGGGGGGGTGTGCGCACATAATGG
129 AACCTGACTGGCGGCATTGGGGTTCCGACGATCGGGG-GGCCGGGGGGGTGTGCGCACATGATGT
* *
17474966 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
17475031 CACCCCCTTAAAGAGCATTTGGGATTTTACAGGTTTGCTACTAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
17475096 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTTGTACACCTCGAGTTTTTAGCTGAATTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATC-TTGTACACTTCGAGTTTTTAGCTGAATTTTTT
*
17475161 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCCGAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
*
17475226 AAATTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
452 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
** * *
17475291 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGAGAATAGTATGAATTGACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
17475356 CATTGGCACACAAAAATATGAAGATGTTCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
582 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * * *
17475421 CGTATCCCCTCCCTCTGGCCTGCGTAGTACCCGCCCGCCCACTTGTTTCATCGGTTGGCTTAGGC
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGC
* * * **
17475486 ATACAGAGTTCATTCCTAGTCTAAGATCCGACTGGACCGAGGGTTGCGGCAGCAGGATCGGCAGC
712 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGC
* * *
17475551 ATGCAGAGGGGGACCCGGTCGATCCTCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGTGCCC
777 ACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCC
*
17475616 GCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
842 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * * * * *
17475669 GCATACGGAGTTCATTCCCAATCTAAGATCGGCCTGGACCCATGGTTGTGGCAACACATTCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGCC-GGACCGAGGGTTGCGGCAGCACATGCTGGG
** * * * * * *
17475734 CTCGAGCATGTGCTGGTGTAGCATTTTTCTTCGTCGGGACACTATCGTCGGAGCATCGTCGGAGA
65 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCAGAGA
* * *
17475799 ACCTGACCGGCGGCATTGTGGTTTCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
130 ACCTGACTGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
*
17475864 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
17475929 CCTCCTTAAAGAGCAATTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
17475994 GGGACACTTTTTTCAAATGGTTACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
17476059 GCATGCCAAAAAAAATACAAGGATCACGTCTACGAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
*
17476124 TTTTAAAAAAATC-CTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
455 TTTT-AAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
17476188 TGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG-CATAAGAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
17476252 ATTGCCACGCA-AAATTATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACCGCTTG
583 ATTGGCACGCAGAAA-TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* ** * *
17476316 CGCATCCCGTTTCTC-GATCGGTGTAGTGTCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
647 CGCATCCCGTCTCTCTGGCCGGCGTA--GT--GCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTT
* * * **
17476380 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGTGGCAGTAGGATCAA
708 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGG
* * * * *
17476445 CAGCACGCAGAGGGGGACTC-GACTGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCAGCTGAG
773 CAGCACGCAGAGGGGGACCCGGTC-GATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAG
* *
17476509 CACCCGCACGCTCGTTTCGTGGGTTGAATTAGGCATAC-GATGTTCATTCCCCA-TCTAA
837 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGA-GTTCATT-CCCAGTCTAA
* * ** **
17476567 GCATACGGAGTTCATTCCTAGTCTAAGATTGGATAGGACCGAGGGTTGCAACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGG-CCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
17476632 ATCGAGCATGCGCTAGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCAGAGA
65 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCAGAGA
* * ** * *
17476697 ACCTGACCGACGGTGTTGGGGTTTCGATGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
130 ACCTGACTGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* **
17476761 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCGAATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
17476826 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
17476891 GGGGACACTTTGTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTTGCTGAA-TTTTTTA
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
17476955 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGCCTTCTGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
17477020 ATCTTAAAAATTCTCGAACCGTAAAAAGTTTAAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * *
17477085 TCCATGAAACATAACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* **
17477150 TTGGCATGCAGAAATATGAAGATGTGCCCGAACCCACCTACCACCCTATCGATCCACGGCTTGCG
584 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
17477215 CATCCCGTAC-CTCTAGTCGGCGTAGTGCCTGGCCGCCCTCCGCCCACTCGTTTCATCGGTTGGC
649 CATCCCGT-CTCTCTGGCCGGCGTAGTG-C---CCG--C-CCGCCCACTCGTTTCGTCGGTTGGC
* * *
17477279 TTAGGCATACGAAGTTCATTCCCAGTC-----T-----------GAGTGTTGCGGCAGCAAGATC
706 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATC
* * * * * *
17477328 GGTAGCATGCAGAGGGGGACCCAGCCGGTCCCCGGCTT-CTGCAT-CCAGCCCCTCTGGCCGACT
771 GGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGC-GCATCCCA-CCCCTCTGGCCGGCT
* *
17477391 GAGCACCCGCACGCTCATTTC--------A-TT-GGC-T--A-A---C-TT---AG-----
834 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * * *
17477426 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTGTGGCAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGG-CCGGACCGAGGGTTGCGGCAGCACATGCTGGG
** * * * *
17477491 CTCG-GCCATGTGCTGGTGTAGCATTTTTCTTCACCGGAGCACCATCGCCAGAGCATCGCCGGAG
65 CTCGAG-CATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCAGAG
* *
17477555 AACTTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC--GGGGGTGTGCGCACATGATGT
129 AACCTGACTGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * * * *
17477618 GCGATGGGTTCTGATACTTGGCCCTTATATTGTCCCCCTATCACTCACCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
** *
17477683 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTTTTAAAGTGTCTAAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
17477748 TGGGGACACTTTTTTCAAACGATCACAAAATCATGTACACTTCGAGTTTTTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * *
17477813 GTGCATGCCAA-ACAAAATACAGGGATGACGTTTACCAAGCTTGGGGCCAAAACTTCTTCTGAAA
388 GTGCATGCCAACA-AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* *
17477877 AAATTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTC
452 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
17477942 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGAGCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*** * * *
17478007 CATTGGCATATAGAAATATAAAGATGTTCCTAAACCCACCTACCACCCTATCGATCCATGGCTTG
582 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * ** * * *
17478072 TGCATCCCCTCTCTCTGGCCTACGTAGTGCCCGCCCGCCCGCCCGTCCACTTGTTTCGTCAGCTG
647 CGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCGCCCG--C--CCACTCGTTTCGTCGGTTG
* * *
17478137 GCTTAGGCATACGGAGTTCATTGCCAATCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGA
704 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGA
* * *
17478202 TCGGCAGCACGTAGAGGGGGACTCGGTCGATCCCTGGCTTGCGCATCCCACCCCTCTGGCCGGCT
769 TCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCT
*
17478267 GAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
834 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * *
17478328 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGATGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGG-CCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
17478393 CTCGGGCATGTGCTGGTGCAGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCG-TAGGAG
65 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCA-GAG
* * * * * *
17478457 AACCTGACTGGCGGTATTGTGGTTTCGGCGATCGGGGGGGCCGGGGGGCTGTACGCACATGATGT
129 AACCTGACTGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGT
* *
17478522 GCGATTGGTGCTGGTACTTGGCCCTTATAGTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
17478587 CACCCCCTTAAAGAGCAATTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
17478652 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTCTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
*
17478717 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * * *
17478782 AATTTAAAAAAAATCTCGAACCATAAAACA-TTTCAAAAAACATGAAAAATAGAAAATGAGTCGT
453 AATTT-TAAAAAATCTCGAACCGTAAAA-AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
17478846 CTTGCCATGAAACATT-ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
516 CTTGCCATGAAAC-TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * * * *
17478910 GGCATTGCCATGCA-AAATTATAAAGATGTACCTAAACCCACCTACCACCTTATCGATCCACCGC
580 GGCATTGGCACGCAGAAA-TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* ** * * * **
17478974 TTACGCATCCCGTCTCTCTGGGTGGTGTAGTGTCTGCCCGCCCGGTCGTTTTCGTCGGTTGGCTT
644 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACTCG-TTTCGTCGGTTGGCTT
17479039 AGGCATACGGAGTTTCATTCCCAGTCTAAGATCAGACCAGACCGA--------G--GCAGGATCG
708 AGGCATACGGAG-TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCG
* * ** * * **
17479094 ACAGAACATAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCAACTGAG
772 GCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAG
* * * *
17479159 CGCCTGCACGCTCGTTTCGTGGGTTGAATTAGGCATACGGTGTTCATTCCCAGTCTAA
837 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * ** * * **
17479217 GCATACAGAGTTCATTTTCCAGTTTAAGATCAGATCGAATCGAGGGTTGCAACAGCACATGCTGG
1 GCATACGGAGTTCA-TTCCCAGTCTAAGATC-GGCCGGACCGAGGGTTGCGGCAGCACATGCTGG
*
17479282 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAG
64 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCAGAG
* * * * * * **
17479347 AACCTGACCGACGGGCGTTGGGGTTTCGATGATCGGGGAGCCAGGAAGGGTGTGCGCACATGATG
129 AACCTGACTGGC-GGCATTGGGGTTCCGACGATCGGGGGGCC-GGGGGGGTGTGCGCACATGATG
*
17479412 TGCGATGGGTGCTGGTACTTGGCCC-TATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
17479476 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGCGTCTCAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
17479541 ATGGGG-CACTTTGTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTTGCTGAAGTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTT
* * * * *
17479605 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGCTTGGGGCCAAAACGT-ATTCTGT
386 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-TCCTTCCGA
* * * * * *
17479669 AAAAATCTT-AAAATTCCCAAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCG
450 AAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
*
17479733 TCTTTCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAAT
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
17479797 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCA
580 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * *
17479862 TGCGTATCCTGTATCTCTAGCCGGCGTAGTGCCTGCCTGTCCCCCACCCGGTCGTTTCGTCGGTT
645 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC---CGCCCA--C--TCGTTTCGTCGGTT
* * * * * * * * ** *
17479927 GGCTAAGGCATACAGAGTTCATTCCGAATCTAAGATCGGACTAGACTGAGTGTTGCGATAGCAAG
703 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGG
* * * * *
17479992 ATCGGTAACATC-CAGAGGGGGACCCAG-CGATCCCCGACTTGTGCAT-CCAGCCCCTCTGGCCG
768 ATCGGCAGCA-CGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCA-CCCCTCTGGCCG
* * * *
17480054 ACTGAGCACCCACACGCTCGTTTCGTGGGTTGACCTAGGCATAC-GAAGTTCATTCCCAGTCTAA
831 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAG-AGTTCATTCCCAGTCTAA
* * *
17480118 G-AT-C-G-G---------A--C-----T--G--GGACCAAGGGTTGCAGCAGCACATACTGGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGCCGGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * * * * ** ** * *
17480159 TCGGGCATGTGCTGGTGCCGTAGTTTTCTTCGCCAGAGCACCATCGCTAGAGCATCATCGGAAAA
66 TCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCAGAGAA
*
17480224 CCTGACTGGCGGCATTGGGGTTCCGACGAT--------C-GGGGGGTGTGCGCACATGATGTGTG
131 CCTGACTGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
* * * *
17480280 ATGGGTGCTGGTACTTGGCCCTTATATTGTCTCCCTATCACTCATCAAACCTCGAGCACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
17480345 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
17480410 GGACACTTTTTTCAAACGATCACAAAATCATGTACACTTCGAGTTTTTAGCTGAATTTTTTTTGT
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGT
* * *
17480475 GTATGCCAAAAAACAATACAGGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC------
390 GCATGCCAACAAA-AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
17480534 ----------A-----AACCGTAAAAAGTTTTAAAAATAGTGAAAAATAGAAAATGAGTCGTCTT
454 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * *
17480584 GCCATTAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** *
17480649 TTGGCACATAGAAATAGGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
584 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
** * *
17480714 CATCCCGTCTCTCTGGCCGATGTAGTCCCCGCCCGCTCGCCCGTTCGTTTCGTCGGTTGGCTTAG
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC-C-CAC--TCGTTTCGTCGGTTGGCTTAG
* * * * *
17480779 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGTAGCAAGATTGGCA
710 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCA
* * * * * * ** *
17480844 GAACGTAGAGGGGGACTCGGTTGATCCTCGGCTTACGCATCCTGCCCCTCTGGCTGGCTGAGCGC
775 GCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGC
* * * * * *
17480909 CCGTACGCTCGTTCCATGGGTTGACTTAGGTATACGGAGTTCATT-CTAGTCTAA
840 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * * * * *
17480963 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGATGATTACGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GGCCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * **
17481028 CTCGGGCATGTGCAGGTGTCGCATTTTTCTTCACCGGGGCACCATCGTTGGAGCATCGCCAGAGA
65 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCAGAGA
* * * * *
17481093 ACTTGA-TCGGCGGCATTAGGGTTCCGACGGTCAGGGGGCC-GGGGTGTGTAG-GCACATGATGT
130 ACCTGACT-GGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGT-GCGCACATGATGT
* * * * *
17481155 GCGATGGGTGCTAGTACTTGGCCCTTATATTGGTCCCTTATCCCTCATCAAGCCTGGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * * *
17481220 CACCCCTTTAAAGAGCATTTGAGATTTTACGGGTTTGCTGCCAGTAGCCGTTAAATTGTTTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
17481285 TTGGGACACTTTTTTCTAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGTTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
17481350 GTGCATGCCAAAAAAAATACAAGGATCACGTCCACCAAGTTTGGGGCTAAAACTCCTTCC-----
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* *
17481410 ---------AAA----GAA--GT------TTT-AAAAATAGCGAAAAATAGAAAACGAGTCGTCT
453 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
17481453 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* ** * *
17481518 TTTGGCACATAGAAATAGGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGC
583 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * * * * *
17481583 GCGTCCCATCTTTTTGGCTGGCGTAGTGCCTGCCCACCCGCCCTCTCATTTTGTCGGTTGGCTTA
648 GCATCCCGTCTCTCTGGCCGGCGTA--G--TGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTA
* * * * * * * * * * *
17481648 GGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAAGATTACGGCAGCAAGATTGGT
709 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGC
* * ** ***
17481713 AGCACACAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCGTCCCTCTGGTAAGCTGAGCG
774 AGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCG
* * *
17481778 CCCGTACGGTCGTTTCATGGGTTGACTTAGGCATAC-GAAGTTCATT-CCAGTCTAA
839 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAG-AGTTCATTCCCAGTCTAA
* * * * *
17481833 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGATGGTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGG-CCGGACCGAGGGTTGCGGCAGCACATGCTGGG
** * * *
17481898 CTC-AGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCTGGAGCATCGTCGGA-
65 CTCGA-GCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCAGAG
* * * * * *
17481961 AACTTGA-TCAGCGGCATTAGTGTTCCGACGATCCAGGGGGCCAGGGGGAGTGTGCGCACATGAT
129 AACCTGACT-GGCGGCATTGGGGTTCCGACGAT-CGGGGGGCC-GGGGGGGTGTGCGCACATGAT
* * * * *
17482025 GTGCAATGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATACCTCATCAAACCTGGAAAACT
191 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
17482090 CACACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGCGTTTGA
256 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
17482155 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTT
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
17482220 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAA
386 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG-A
* * * *
17482284 AAAAATTTTAAAAAATCTTGAACCATAAAAAGTTTAAAAAATCGTGAAAAATAGAAAATGAGTCG
450 AAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
*
17482349 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * * * *
17482414 GTCATTGGCACACAGAAATATGAAGACGTGCCTAAACTCACCTACCACCCTATTGATGCACGGCT
580 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
** ** * * * * *** *
17482479 TATGCATCTTGTCTCTCTGGCAGGTGCAGTGCCCGCCCACCTGTTCATTTCGTCGGTTGGCTTAG
645 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAG
* * * * * *
17482544 GGATACAGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGTGGCAGCAGGATTGGCA
710 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCA
* * ** * * * *
17482609 GCACGCAGTGGGAGACCCGACCGATCCCCGACTTGCACATCCCGCCCCTCTGGCTGGCTGAGCGC
775 GCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGC
* * **
17482674 CCGTACGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
840 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * *
17482729 G-AT-C---G---A-----A--C-----T-----GGACCG-GGGTTTACAGCAGCACATGCTTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGCCGGACCGAGGG-TTGCGGCAGCACATGCTGGG
* * * *
17482768 CTCGGGCATATGCTGGTGCCGTATTTTTCTTCGCCAGGGCACCAT---C---GC--CG---GAGA
65 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCAGAGA
* * * * *
17482822 ACCTGACCGACGGCATTGGTGTTCCGACGATCGGGCGGGTCGGGGGGGTGTACGCACATGATGTG
130 ACCTGACTGGCGGCATTGGGGTTCCGACGATCGGG-GGGCCGGGGGGGTGTGCGCACATGATGTG
* * * * *
17482887 CGAAGGGTGCTGGGACCTGGCCCTCATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
17482952 ACGCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
17483017 GGGGACACTTTTTTCAAATGGACACAAAATCTTGTACAGTTCGAGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
*
17483082 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGG-CAAAA-TCCTTTCG-AAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGGCCAAAACTCCTTCCGAAAA
* * * *
17483144 AATTTTAAAAAATC-CTGAACTGTAAAGAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTC
453 AATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
17483208 TTGCCATGAAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
17483273 CATTGGCATGCAGAAATATGAAGATGTTCCTAAACCCACCTACCACCCTATCGATCTATGACTTG
582 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
17483338 TGCATCCCGTCTCTCTGGCCGACGTAATGCCAGCCCGCCCGCCCGCCTGATCGTTTCATCAGTTG
647 CGCATCCCGTCTCTCTGGCCGGCGT-A-G--TGCCCGCCCGCCC-AC---TCGTTTCGTCGGTTG
* * ** * * *
17483403 GCTTAGGCATACGGAGTTCATTCCCATTCTAGGATTTGACCAGACCGAAGGTTGTGGCAGCAAGA
704 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGA
* ** * * *
17483468 TCGGCAGCACGTAGAGAAGGACCCGGTCGATCCCCGGCTTGCGCATCCCACCCTTCTGGCCGACA
769 TCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCT
* * *
17483533 GAGTGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
834 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* *
17483594 G-AT-C-G-G---A---CC-G-----GA----CC--A---AGGTTTGTGGCAGCACATGCTGGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGCCGGACCGAGGGTTGCGGCAGCACATGCTGGGC
*
17483634 TCG-GCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCAT---C---GC--CG--A-AGAA
66 TCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCAGAGAA
* * * * * * *
17483687 TCTTACTGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGAGGTGTTTGTGTACATGATGTGC
131 CCTGACTGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
* * *
17483752 GATGGGTGCTAGTACTTGGCCCTTATTTTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
17483817 CCCCCTTAAAGAGCATTTGCGATTTTAC-GAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 CCCCCTTAAAGAGCATTTGAGATTTTACAG-GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
** * * * * *
17483881 GCAGACACTATTTTCAAATTGCCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAA-TTTTTTA
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
17483945 TGCATGCCAACAAAAATACAATGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGTAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
17484010 ATTTTAAAAAATCCCGAATCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
17484075 GCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
17484140 TTGGCACGCAGAAATA
584 TTGGCACGCAGAAATA
17484156 AGATCGGACC
Statistics
Matches: 8114, Mismatches: 1000, Indels: 555
0.84 0.10 0.06
Matches are distributed among these distances:
844 1 0.00
845 101 0.01
846 72 0.01
847 101 0.01
848 96 0.01
849 1 0.00
856 3 0.00
857 196 0.02
858 203 0.03
859 656 0.08
860 76 0.01
861 10 0.00
862 7 0.00
863 54 0.01
864 313 0.04
865 442 0.05
866 74 0.01
867 41 0.01
868 2 0.00
869 34 0.00
870 630 0.08
871 5 0.00
872 254 0.03
873 1 0.00
874 27 0.00
875 92 0.01
876 129 0.02
877 28 0.00
878 186 0.02
879 4 0.00
880 41 0.01
881 49 0.01
882 4 0.00
883 1 0.00
884 4 0.00
885 83 0.01
886 8 0.00
887 92 0.01
888 105 0.01
889 181 0.02
890 294 0.04
891 62 0.01
892 30 0.00
893 59 0.01
894 22 0.00
895 525 0.06
896 493 0.06
897 682 0.08
898 563 0.07
899 206 0.03
900 7 0.00
901 142 0.02
902 168 0.02
903 2 0.00
904 263 0.03
905 186 0.02
906 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (894 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGCCGGACCGAGGGTTGCGGCAGCACATGCTGGGC
TCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCAGAGAA
CCTGACTGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGC
AGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCAC
GCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
Found at i:17478338 original size:26 final size:26
Alignment explanation
Indices: 17478302--17478354 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17478292 GTTGACTTAG
*
17478302 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
17478328 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
17478354 G
1 G
17478355 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Done.