Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 96 of 195
Found at i:17480968 original size:25 final size:26
Alignment explanation
Indices: 17480940--17480989 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 26
17480930 TGACTTAGGT
*
17480940 ATACGGAGTTCATT-CTAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
17480965 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
17480990 ATCAGACCGA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 14 0.61
26 9 0.39
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:17481822 original size:870 final size:864
Alignment explanation
Indices: 17477920--17484155 Score: 5891
Period size: 870 Copynumber: 7.1 Consensus size: 864
17477910 CAAAAATCGT
* * *
17477920 GAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAGCATTGTATG
1 GAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* * * ** *
17477985 AATTTACAAGCCATAAAAATGGCATTGGCATATAGAAATATAAAGATGTTCCTAAACCCACCTAC
66 AATTTACAAGCCACAAAAATGGCATTGGCACACAGAAATAGGAAGATGTGCCTAAACCCACCTAC
* * * * *
17478050 CACCCTATCGATCCATGGCTTGTGCATCCCCTCTCTCTGGCCTACGTAGTGCCCGCCCGCCCGCC
131 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCC
* * * * * * *
17478115 CGTCCACTTGTTTCGTCAGCTGGCTTAGGCATACGGAGTTCATTGCCAATCTAAGATCAGACCAG
196 CGTTCA----TTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAG
* * * * * * * * *
17478180 ACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGTAGAGGGGGACTCGGTCGATCCCTGGCTTGCG
257 ACCGAAGGTTACGGCAGCAAGATTGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGACTTGCG
* * * * * *
17478245 CATCCCACCCCTCTGGCCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-A
322 CATCCCGCCCCTCTGGCTGGCTGAGCGCCCGTACGCTCATTTCATGGGTTGACTTAGGCATACGA
* * *
17478309 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGATGGT
387 -AGTTCATTCCCAGTCTAAGCATAC-GAGTTCATTCCCAGTCTAAGATC-GACC-GAACGAGGGT
* * *
17478374 TACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCAGCATTTTTCTTCGTCGGGGCACCATC
448 TACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCAT-
* * * * * *
17478439 ACCG-GAGCATCGTAGGAGAACCTGACTGGCGGTATT-GTGGTTTCGGCGATCGGGGGGGCCGGG
512 --CGTGAGCATCGCA-GAGAACTTGAC-GGCGGCATTAG-GGTTCCGACGATC-AGGGGGCCGGG
* * * *
17478502 GGGCTGTACGCACATGATGTGCGATTGGTGCTGGTACTTGGCCCTTATAGTGGCCCCCTATCCCT
571 GTG-TGT-GGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
*
17478567 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAATTGAGATTTTACAGGTTTGCTGCCAGT
634 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
17478632 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
699 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* *
17478697 GTTTTTAGCTGAATTTTCTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGG
764 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * *
17478762 GCCAAAACTCCTTCCGAAAAAATTTAAAAAAAATCTCGAACCATAAAACATTTCAAAAAAC
829 GCCAAAACTCCTTCC-AAAGAA-GT--------T-T-------TAAAA-A--T----AAGC
17478823 ATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACATT-ACGTGAAGGCTTAAGGGACCATTGT
1 --GAAAAATAGAAAATGAGTCGTCTTGCCATGAAAC-TTCACGTGAAGGCTTAAGGGACCATTGT
* * ** ** *
17478887 ATGAATTTACAAGCCATAAAAATGGCATTGCCATGCA-AAATTATAAAGATGTACCTAAACCCAC
63 ATGAATTTACAAGCCACAAAAATGGCATTGGCACACAGAAA-TAGGAAGATGTGCCTAAACCCAC
* * * ** ** * * *
17478951 CTACCACCTTATCGATCCACCGCTTACGCATCCCGTCTCTCTGGGTGGTGTAGTGTCTGCCCGCC
127 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACC
** * *
17479016 CGGTCG-T--TTTCGTCGGTTGGCTTAGGCATACGGAGTTTCATTCCCAGTCTAAGATCAGACCA
192 CGCCCGTTCATTTCGTCGGTTGGCTTAGGCATACGAAG-TTCATTCCCAGTCTAAGATCGGACCA
* * * ** *
17479078 GACC----G--A-GGCAG---GATCGACAGAACATAGAGGGGGACCCGATCGATCCCCGACTTGC
256 GACCGAAGGTTACGGCAGCAAGATTGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGACTTGC
* *** * * * * *
17479133 GCATCCCACCCCTCTGGCCAACTGAGCGCCTGCACGCTCGTTTCGTGGGTTGAATTAGGCATACG
321 GCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGTACGCTCATTTCATGGGTTGACTTAGGCATACG
** * * *
17479198 GTGTTCATTCCCAGTCTAAGCATACAGAGTTCATTTTCCAGTTTAAGATCAGATCGAATCGAGGG
386 AAGTTCATTCCCAGTCTAAGCATAC-GAGTTCA-TTCCCAGTCTAAGATC-GACCGAA-CGAGGG
* ** * *
17479263 TTGCAACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCAT
447 TTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCAT
* * * * * * * *
17479328 CGCCGGAGCATCGCCGGAGAACCTGACCGACGGGCGTTGGGGTTTCGATGATC-GGGGAGCCAGG
512 CG--TGAGCATCG-CAGAGAACTTGA-CGGC-GGCATTAGGGTTCCGACGATCAGGGG-GCC-GG
17479392 AAGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC-TATATTGGCCCCCTATCC
570 --GGTGTGTG-GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
*
17479455 CTCATCAAACCTCTAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
632 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * *
17479520 GTAGCCATTAAAGCGTCTCAAATGGGG-CACTTTGTTCAAATGGTCACAAAATCTTGTACACTTC
697 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * * *
17479584 AAGTTTTTTGCTGAAGTTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGCTT
762 GAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* *
17479649 GGGGCCAAAACGTATTCTGTAAAAATCTTAAAATTCCCAAACCGCAAAAAGTTTTAAAAAT-CGT
826 GGGGCCAAAAC----TC---------C------TT-CCAAA--G----AAGTTTTAAAAATAAGC
* *
17479713 GAAAAATAGAAAACGAGTCGTCTTTCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
1 GAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* * *
17479778 AATTTACAAGCCA-TAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
66 AATTTACAAGCCACAAAAATGGCATTGGCACACAGAAATAGGAAGATGTGCCTAAACCCACCTAC
* * * * * * * *
17479842 CACCCTATCGATCCACGGCATGCGTATCCTGTATCTCTAGCCGGCGTAGTGCCTGCCTGTCCCCC
131 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC---CACCC
* * * * * * *
17479907 ACCCGGTCGTTTCGTCGGTTGGCTAAGGCATAC-AGAGTTCATTCCGAATCTAAGATCGGACTAG
193 GCCCGTTCATTTCGTCGGTTGGCTTAGGCATACGA-AGTTCATTCCCAGTCTAAGATCGGACCAG
* * ** * * * *
17479971 ACTG-AGTGTTGCGATAGCAAGATCGGTAACATC-CAGAGGGGGACCCAG-CGATCCCCGACTTG
257 ACCGAAG-GTTACGGCAGCAAGATTGGCAGCA-CGCAGAGGGGGACCCGGTCGATCCCCGACTTG
* * * * * ** * * *
17480033 TGCATCCAGCCCCTCTGGCCGACTGAGCACCCACACGCTCGTTTCGTGGGTTGACCTAGGCATAC
320 CGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGTACGCTCATTTCATGGGTTGACTTAGGCATAC
* *
17480098 GAAGTTCATTCCCAGTCTAAG-AT-CG-G---------A--CT--G--GGACC--A--AGGGTTG
385 GAAGTTCATTCCCAGTCTAAGCATACGAGTTCATTCCCAGTCTAAGATCGACCGAACGAGGGTTA
* * * * *
17480141 CAGCAGCACATACTGGGCTCGGGCATGTGCTGGTGCCGTAGTTTTCTTCGCCAGAGCACCATCGC
450 CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCG-
* * * * *
17480206 TAGAGCATCATCGGAAAACCTGACTGGCGGCATTGGGGTTCCGACGATC----GG--GGGGTGTG
514 T-GAGCATC-GCAGAGAACTTGAC-GGCGGCATTAGGGTTCCGACGATCAGGGGGCCGGGGTGTG
* * * * *
17480265 -CGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGTCTCCCTATCACTCATCAAA
576 TGGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
*
17480329 CCTCGAGCACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
641 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* * * *
17480394 AAAGTGTCCGAAATGGGGACACTTTTTTCAAACGATCACAAAATCATGTACACTTCGAGTTTTTA
706 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * *
17480459 GCTGAATTTTTTTTGTGTATGCCAAAAAACAATACAGGGATCACGTCTACCAAGTTTGGGGCCAA
771 GCTGAA-TTTTTTTGTGCATGCCAACAAA-AATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
*
17480524 AACTCCTTCCAAACCGTAAAAAGTTTTAAAAAT-AGT
834 AACTCCTTCCAAA--G----AAGTTTTAAAAATAAGC
* *
17480560 GAAAAATAGAAAATGAGTCGTCTTGCCATTAAACTTCATGTGAAGGCTTAAGGGACCATTGTATG
1 GAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
*
17480625 AATTTACAAGCCACAAAAATGGCATTGGCACATAGAAATAGGAAGATGTGCCTAAACCCACCTAC
66 AATTTACAAGCCACAAAAATGGCATTGGCACACAGAAATAGGAAGATGTGCCTAAACCCACCTAC
* * * *
17480690 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGATGTAGTCCCCGCCCGCTCGCC
131 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCC
* *
17480755 CGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCG
196 CGTTCATTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCG
* * * * * * * * *
17480820 AGGGTTACGGTAGCAAGATTGGCAGAACGTAGAGGGGGACTCGGTTGATCCTCGGCTTACGCATC
261 AAGGTTACGGCAGCAAGATTGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATC
* * * * *
17480885 CTGCCCCTCTGGCTGGCTGAGCGCCCGTACGCTCGTTCCATGGGTTGACTTAGGTATACGGAGTT
326 CCGCCCCTCTGGCTGGCTGAGCGCCCGTACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTT
* * *
17480950 CATT-CTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGATGATTACGG
391 CATTCCCAGTCTAAGCATAC-GAGTTCATTCCCAGTCTAAGATC-GACCGAAC-GAGGGTTACGG
* * * * *
17481014 CAGCACATGCTAGGCTCGGGCATGTGCAGGTGTCGCATTTTTCTTCACCGGGGCACCATCGTTGG
453 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCG-T-G
*
17481079 AGCATCGCCAGAGAACTTGATCGGCGGCATTAGGGTTCCGACGGTCAGGGGGCCGGGGTGTGTAG
516 AGCATCG-CAGAGAACTTGA-CGGCGGCATTAGGGTTCCGACGATCAGGGGGCCGGGGTGTGT-G
* * * *
17481144 GCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGTCCCTTATCCCTCATCAAGCC
578 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * * *
17481209 TGGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACGGGTTTGCTGCCAGTAGCCGTTAA
643 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * * * * *
17481274 ATTGTTTGAAATTGGGACACTTTTTTCTAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGT
708 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * *
17481339 TGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCCACCAAGTTTGGGGCTAAAACT
773 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
17481404 CCTTCCAAAGAAGTTTTAAAAAT-AGC
838 CCTTCCAAAGAAGTTTTAAAAATAAGC
*
17481430 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
1 GAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* *
17481495 AATTTACAAGCCACAAAAATGGCTTTGGCACATAGAAATAGGAAGATGTGCCTAAACCCACCTAC
66 AATTTACAAGCCACAAAAATGGCATTGGCACACAGAAATAGGAAGATGTGCCTAAACCCACCTAC
* * * * * * * *
17481560 CACCCTATCGATCCATGGCTTGCGCGTCCCATCTTTTTGGCTGGCGTAGTGCCTGCCCACCCGCC
131 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCC
* * * *
17481625 C-TCTCATTTTGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGACT
196 CGT-TCATTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACC
* * *
17481689 GAAGATTACGGCAGCAAGATTGGTAGCACACAGAGGGGGACCCGGTCGATCCCCGACTTGCGCAT
260 GAAGGTTACGGCAGCAAGATTGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGACTTGCGCAT
* * * *
17481754 CCCGTCCCTCTGG-TAAGCTGAGCGCCCGTACGGTCGTTTCATGGGTTGACTTAGGCATACGAAG
325 CCCGCCCCTCTGGCT-GGCTGAGCGCCCGTACGCTCATTTCATGGGTTGACTTAGGCATACGAAG
*
17481818 TTCATT-CCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGATGGTTAC
389 TTCATTCCCAGTCTAAGCATAC-GAGTTCATTCCCAGTCTAAGATC-GACCGAA-CGAGGGTTAC
* * ** *
17481882 GGTAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCT
451 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCG-T
* * * *
17481947 GGAGCATCGTCGGA-AACTTGATCAGCGGCATTAGTGTTCCGACGATCCAGGGGGCCAGGGGGAG
515 -GAGCATCG-CAGAGAACTTGA-CGGCGGCATTAGGGTTCCGACGAT-CAGGGGGCC--GGGGTG
* * *
17482011 TGTGCGCACATGATGTGCAATGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATACCTCATC
574 TGTG-GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * *
17482076 AAACCTGGAAAACTCACACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
638 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* *
17482141 ATTAAAGCGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
703 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
*
17482206 TTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
768 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * *
17482271 AAACTCCTTCGAAAAAAATTTTAAAAAATCTTGAACCATAAAAAGTTTAAAAAATC
833 AAACTCCTTCCAAAGAAGTTTT----AA-----AA--AT---AAG----------C
*
17482327 GTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTA
1 --GAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * * * *
17482392 TGAATTTACAAGCCATAAAAATGTCATTGGCACACAGAAATATGAAGACGTGCCTAAACTCACCT
64 TGAATTTACAAGCCACAAAAATGGCATTGGCACACAGAAATAGGAAGATGTGCCTAAACCCACCT
* * ** ** * ** *
17482457 ACCACCCTATTGATGCACGGCTTATGCATCTTGTCTCTCTGGCAGGTGCAGTGCCCGCCCA----
129 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCG
* * ** *
17482518 CCTGTTCATTTCGTCGGTTGGCTTAGGGATAC-AGAGTTCATTCCCAGTCTAAGATCAAACCGGA
194 CCCGTTCATTTCGTCGGTTGGCTTAGGCATACGA-AGTTCATTCCCAGTCTAAGATCGGACCAGA
* ** * * * ** *
17482582 CCGAGGGTTGTGGCAGCAGGATTGGCAGCACGCAGTGGGAGACCCGACCGATCCCCGACTTGCAC
258 CCGAAGGTTACGGCAGCAAGATTGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGACTTGCGC
* * *
17482647 ATCCCGCCCCTCTGGCTGGCTGAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATATGGA
323 ATCCCGCCCCTCTGGCTGGCTGAGCGCCCGTACGCTCATTTCATGGGTTGACTTAGGCATACGAA
* *
17482712 GTTCATTCCCAGTCTAAG-AT-C--G---A-----A--CT--G---GACCG---G-GGTTTACAG
388 GTTCATTCCCAGTCTAAGCATACGAGTTCATTCCCAGTCTAAGATCGACCGAACGAGGGTTACGG
* * *
17482754 CAGCACATGCTTGGCTCGGGCATATGCTGGTGCCGTATTTTTCTTCGCCAGGGCACCATC----G
453 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCGTGAG
* * * * * *
17482815 C--CG--GAGAACCTGACCGACGGCATT-GGTGTTCCGACGATCGGGCGGGTCGGGGGGGTGTAC
518 CATCGCAGAGAACTTGA-CGGCGGCATTAGG-GTTCCGACGATCAGG-GGG-CCGGGGTGTGT-G
* * * *
17482875 GCACATGATGTGCGAAGGGTGCTGGGACCTGGCCCTCATATTGGCCCCCTATCCCTCATCAAACC
578 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * *
17482940 TCAAGAACTCACACGCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
643 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * *
17483005 AGTGTCTAAAATGGGGACACTTTTTTCAAATGGACACAAAATCTTGTACAGTTCGAGTTTTTAGC
708 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
17483070 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGG-CAAAA-
773 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGGCCAAAAC
*
17483133 TCCTTTCGAAA-AA-TTTTAAAAAATCCTGAACTGTAAAGAGTTTCAAAAATC
837 TCC-TTCCAAAGAAGTTTT---AAA-----AA---T--A-AG----------C
*
17483184 ATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAGGGGACCATTGTA
1 --GAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* ** * *
17483249 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTTCCTAAACCCACCT
64 TGAATTTACAAGCCACAAAAATGGCATTGGCACACAGAAATAGGAAGATGTGCCTAAACCCACCT
* * * * * * *
17483314 ACCACCCTATCGATCTATGACTTGTGCATCCCGTCTCTCTGGCCGACGTAATGCCAGCCCGCCCG
129 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCG
* * * * * * **
17483379 CCCGCCTGATCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCATTCTAGGATTTGACC
194 CCCG--T--TCATTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACC
** * * ** *
17483444 AGACCGAAGGTTGTGGCAGCAAGATCGGCAGCACGTAGAGAAGGACCCGGTCGATCCCCGGCTTG
255 AGACCGAAGGTTACGGCAGCAAGATTGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGACTTG
* * * * * * ** *
17483509 CGCATCCCACCCTTCTGGCCGACAGAGTGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATAC
320 CGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGTACGCTCATTTCATGGGTTGACTTAGGCATAC
*
17483574 -AGAGTTCATTCCCAGTCTAAG-AT-CG-G---A----C---C---G---GACC--A--AGGTTT
385 GA-AGTTCATTCCCAGTCTAAGCATACGAGTTCATTCCCAGTCTAAGATCGACCGAACGAGGGTT
**
17483615 GTGGCAGCACATGCTGGGCTC-GGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCATC-
449 ACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCG
* *
17483678 ---GC--CG-A-AGAATCTT-ACTGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGAGGTGT
514 TGAGCATCGCAGAGAA-CTTGAC-GGCGGCATTAGGGTTCCGACGATC-AGGGGGCCGG-GGTGT
* * * * *
17483735 TTGTGTACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATTTTGGCCCCCTATCCCTTATCA
575 GTG-GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
*
17483800 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGCGATTTTAC-GAGTTTGCTGCCAGTAGCC
639 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG-GTTTGCTGCCAGTAGCC
** * * *
17483864 ATTAAAGTGTCTGAAATGCAGACACTATTTTCAAATTGCCACAAAATCTTGTACACTTCGAGTTT
703 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * *
17483929 TTAGTTGAA-TTTTTTATGCATGCCAACAAAAATACAATGATCACGTCTACCAAGTTTGGGGCCA
768 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
17483993 AAACTCCTTCCGTAAA-AA-TTTTAAAAAATCCCGAATCGTAAAAAGTTTC
833 AAACTCCTTCC--AAAGAAGTTTT---AAA-----AA---T---AAG---C
* *
17484042 AAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGAC
1 ---------GAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* *
17484107 CATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGCACGCAGAAATA
57 CATTGTATGAATTTACAAGCCACAAAAATGGCATTGGCACACAGAAATA
17484156 AGATCGGACC
Statistics
Matches: 4576, Mismatches: 555, Indels: 440
0.82 0.10 0.08
Matches are distributed among these distances:
844 1 0.00
845 101 0.02
846 76 0.02
847 101 0.02
848 98 0.02
849 1 0.00
851 1 0.00
854 2 0.00
856 9 0.00
857 184 0.04
858 8 0.00
859 255 0.06
860 34 0.01
861 4 0.00
862 7 0.00
863 62 0.01
864 293 0.06
865 443 0.10
866 76 0.02
867 39 0.01
869 31 0.01
870 651 0.14
871 5 0.00
872 260 0.06
874 23 0.01
875 89 0.02
876 55 0.01
877 21 0.00
878 177 0.04
879 1 0.00
880 3 0.00
881 4 0.00
883 4 0.00
885 1 0.00
887 94 0.02
888 77 0.02
889 181 0.04
890 270 0.06
891 57 0.01
892 31 0.01
893 27 0.01
894 4 0.00
895 173 0.04
896 13 0.00
897 3 0.00
898 32 0.01
899 197 0.04
900 2 0.00
901 89 0.02
902 19 0.00
903 2 0.00
904 3 0.00
905 169 0.04
906 3 0.00
909 5 0.00
910 2 0.00
914 1 0.00
915 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (864 bp):
GAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
AATTTACAAGCCACAAAAATGGCATTGGCACACAGAAATAGGAAGATGTGCCTAAACCCACCTAC
CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCC
CGTTCATTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCG
AAGGTTACGGCAGCAAGATTGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATC
CCGCCCCTCTGGCTGGCTGAGCGCCCGTACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTT
CATTCCCAGTCTAAGCATACGAGTTCATTCCCAGTCTAAGATCGACCGAACGAGGGTTACGGCAG
CACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCGTGAGCAT
CGCAGAGAACTTGACGGCGGCATTAGGGTTCCGACGATCAGGGGGCCGGGGTGTGTGGCACATGA
TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAA
AGAAGTTTTAAAAATAAGC
Found at i:17481837 original size:25 final size:26
Alignment explanation
Indices: 17481808--17481859 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 26
17481798 GTTGACTTAG
17481808 GCATAC-GAAGTTCATT-CCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
17481833 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17481859 G
1 G
17481860 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 14 0.56
26 11 0.44
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17483028 original size:859 final size:860
Alignment explanation
Indices: 17481833--17484155 Score: 3153
Period size: 865 Copynumber: 2.7 Consensus size: 860
17481823 TCCAGTCTAA
* *
17481833 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGATGG-TTACGGTAGCACATGCTGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGA-GGTTTACGGCAGCACATGCTGG
** * * * *
17481897 GCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCTGGAGCATCGTCGGAA
65 GCTC-GGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCGCCGGAG-AAC--CTG--
* *
17481962 ACTTGATCAGCGGCATTAGTGTTCCGACGATCCAGGGGGCCAGGGGGAGTGTGCGCACATGATGT
124 AC-TG---A-CGGCATTGGTGTTCCGACGAT-CGGGGGGCC-GGGGGAGTGTGCGCACATGATGT
* * *
17482027 GC-AATGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATACCTCATCAAACCTGGAA-AACT
182 GCGAA-GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT-CAAGAACT
* * *
17482090 CACACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGCGTTTGA
245 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
17482155 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTT
310 AATGGGGACACTTTTTTCAAATGGACACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTT
17482220 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAA
374 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCG--A
* * *
17482285 AAAATTTTAAAAAATCTTGAACCATAAAAAGTTTAAAAAATCGTGAAAAATAGAAAATGAGTCGT
437 AAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGT
*
17482350 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
502 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * *
17482415 TCATTGGCACACAGAAATATGAAGACGTGCCTAAACTCACCTACCACCCTATTGATGC-ACGGCT
567 GCATTGGCACGCAGAAATATGAAGACGTGCCTAAACCCACCTACCACCCTATCGAT-CTACGACT
** * * * * *
17482479 TATGCATCTTGTCTCTCTGG-C-A-G-GTG-CAG-TGCCCGCCCACCTGTTCATTTCGTCGGTTG
631 TATGCATCCCGTCTCTCTGGCCGACGAATGCCAGCCGCCCGCCCACCTGATCATTTCATCAGTTG
* * * *
17482538 GCTTAGGGATACAGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGTGGCAGCAGGA
696 GCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAAGGTTGTGGCAGCAAGA
* * * * * *
17482603 TTGGCAGCACGCAGTG-GGAGACCCGACCGATCCCCGACTTGCACATCCCGCCCCTCTGGCTGGC
761 TCGGCAGCACGCAGAGAAG-GACCCGACCGATCCCCGACTTGCACATCCCACCCCTCTGGCCGAC
* **
17482667 TGAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAG
825 AGAGCGCCCACACGCTCATTTCGTGGGTTGACTTAG
** * * * * *
17482703 GCATATGGAGTTCATTCCCAGTCTAAGATCGAACTGGACCGGGGTTTACAGCAGCACATGCTTGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGTTTACGGCAGCACATGCTGGG
* * *
17482768 CTCGGGCATATGCTGGTGCCGTATTTTTCTTCGCCAGGGCACCATCGCCGGAGAACCTGACCGAC
66 CTC-GGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCGCCGGAGAACCTGACTGAC
* * *
17482833 GGCATTGGTGTTCCGACGATCGGGCGGGTCGGGGGGGTGTACGCACATGATGTGCGAAGGGTGCT
130 GGCATTGGTGTTCCGACGATCGGG-GGGCCGGGGGAGTGTGCGCACATGATGTGCGAAGGGTGCT
* * * *
17482898 GGGACCTGGCCCTCATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACGCCCTTAAA
194 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAA
* *
17482963 GAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTT
259 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
*
17483028 TTTCAAATGGACACAAAATCTTGTACAGTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
324 TTTCAAATGGACACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAAC
17483093 AAAAATACAAGGATCACGTCTACCAAGTTTAGGGG-CAAAA-TCCTTTCGAAAAATTTTAAAAAA
388 AAAAATACAAGGATCACGTCTACCAAGTTT-GGGGCCAAAACTCC-TTCGAAAAATTTTAAAAAA
* * *
17483156 TCCTGAACTGTAAAGAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACT
451 TCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACT
* *
17483221 TCACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
516 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
* * * *
17483286 AAATATGAAGATGTTCCTAAACCCACCTACCACCCTATCGATCTATGACTTGTGCATCCCGTCTC
581 AAATATGAAGACGTGCCTAAACCCACCTACCACCCTATCGATCTACGACTTATGCATCCCGTCTC
* * *
17483351 TCTGGCCGACGTAATGCCAGCCCGCCCGCCCGCCTGATCGTTTCATCAGTTGGCTTAGGCATACG
646 TCTGGCCGACG-AATGCCAG-CCGCCCGCCCACCTGATCATTTCATCAGTTGGCTTAGGCATACA
* * *** *
17483416 GAGTTCATTCCCATTCTAGGATTTGACCAGACCGAAGGTTGTGGCAGCAAGATCGGCAGCACGTA
709 GAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAAGGTTGTGGCAGCAAGATCGGCAGCACGCA
** * * * *
17483481 GAGAAGGACCCGGTCGATCCCCGGCTTGCGCATCCCACCCTTCTGGCCGACAGAGTGCCCACACG
774 GAGAAGGACCCGACCGATCCCCGACTTGCACATCCCACCCCTCTGGCCGACAGAGCGCCCACACG
17483546 CTCATTTCGTGGGTTGACTTAG
839 CTCATTTCGTGGGTTGACTTAG
* **
17483568 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGTTTGTGGCAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGTTTACGGCAGCACATGCTGGG
* * * *
17483633 CTCGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCGCCGAAGAATCTTACTGGCG
66 CTCGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCGCCGGAGAACCTGACTGACG
* * * * * * * *
17483698 GCATTGGGGTTCCGACGATCGGGGGGGCCGGAGGTGTTTGTGTACATGATGTGCGATGGGTGCTA
131 GCATTGGTGTTCCGACGATC-GGGGGGCCGGGGGAGTGTGCGCACATGATGTGCGAAGGGTGCTG
* * *
17483763 GTACTTGGCCCTTATTTTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCACACCCCCTTAAAG
195 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAG
* ** *
17483828 AGCATTTGCGATTTTAC-GAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGCAGACACTAT
260 AGCATTTGAGATTTTACAG-GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * * *
17483892 TTTCAAATTGCCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTATGCATGCCAACA
324 TTTCAAATGGACACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCAACA
*
17483957 AAAATACAATGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGTAAAAATTTTAAAAAAT
389 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CG-AAAAATTTTAAAAAAT
* * * *
17484022 CCCGAATCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
452 CCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTT
* *
17484087 CATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGCACGCAGA
517 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGA
17484152 AATA
582 AATA
17484156 AGATCGGACC
Statistics
Matches: 1282, Mismatches: 148, Indels: 51
0.87 0.10 0.03
Matches are distributed among these distances:
856 1 0.00
857 193 0.15
858 6 0.00
859 249 0.19
860 32 0.02
861 1 0.00
862 6 0.00
863 57 0.04
864 268 0.21
865 363 0.28
866 1 0.00
867 2 0.00
869 4 0.00
870 99 0.08
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (860 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGTTTACGGCAGCACATGCTGGG
CTCGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCGCCGGAGAACCTGACTGACG
GCATTGGTGTTCCGACGATCGGGGGGCCGGGGGAGTGTGCGCACATGATGTGCGAAGGGTGCTGG
TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGA
GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
TCAAATGGACACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCAACAAA
AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAATTTTAAAAAATCCTG
AACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACG
TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATA
TGAAGACGTGCCTAAACCCACCTACCACCCTATCGATCTACGACTTATGCATCCCGTCTCTCTGG
CCGACGAATGCCAGCCGCCCGCCCACCTGATCATTTCATCAGTTGGCTTAGGCATACAGAGTTCA
TTCCCAGTCTAAGATCAAACCAGACCGAAGGTTGTGGCAGCAAGATCGGCAGCACGCAGAGAAGG
ACCCGACCGATCCCCGACTTGCACATCCCACCCCTCTGGCCGACAGAGCGCCCACACGCTCATTT
CGTGGGTTGACTTAG
Found at i:17485036 original size:26 final size:26
Alignment explanation
Indices: 17485006--17485058 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17484996 GTTGACTTAG
17485006 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17485032 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17485058 G
1 G
17485059 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17485934 original size:26 final size:26
Alignment explanation
Indices: 17485898--17485950 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17485888 GTTGACTTAG
17485898 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
17485924 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17485950 G
1 G
17485951 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17486364 original size:891 final size:889
Alignment explanation
Indices: 17484154--17488517 Score: 5099
Period size: 891 Copynumber: 4.9 Consensus size: 889
17484144 CACGCAGAAA
** * * *
17484154 TAAGATCGGACCAGATTGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGT-CTTGGAGCCGT
1 TAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGC-TGGTGCCGC
* * * * * * *
17484218 ATTTTTGTTCGCCGGGGCACCGTTGCCGGTGCATCATCGGAGAACCTGACCGACAGCATTGGGGT
65 ATTTTTCTTCGCCGGGGCACCATCGCCAGAGCATCATCGGAGAACCTGACCGACGGCATTAGGGT
* * * *
17484283 TCCGACGATCGGGGGG-GGTGGGGGTGTGCACACAGGATGTGCGATGGGTGCTAGTACTTGGCCC
130 TCCGACGATCGGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
*
17484347 TTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
194 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* * * *
17484412 TTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACATTTTTTTCAAATCGTC
259 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* * *
17484477 ACAAAATCTTGAACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGG
324 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
* * * ** * * * *
17484542 ATCACGTCTACCATGTTTGGGCCCAAAAATTATTCTGAAAAAATTTTGAAAAATCTCGAACTGCA
389 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCAAACCGCA
* * * *
17484607 AAAAGTTTCGAAAATCATGAAAATTAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
454 AAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCAAGTGAAGGC
* * *
17484672 TTAAGGCACCATTGTATGAATCTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
519 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGAT
* * *
17484737 GTGCCTAATCCCACCTTCCACCCTATGGATCCACGGCTTGCGCA-CCCGTCTCTCTGGCCGGCGT
584 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT
* * *
17484801 AGTGGCTGCCCGTCTGCCCGCTAGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCT
649 A---G-TG-CC--C-GCCCGCT---T-GTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* ** ** * * * * * *
17484866 AGTCTAAGCTTGGATTGGACCTATGGTTGTGGTAGTAGGATTGGCAGCACGCAGAGGGGGACCCG
702 AGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATTGGCAGCACACAGAGGGGGACCCG
* * * *
17484931 ACCGATCCCCGGCTTGCGCATT-TCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATG
767 -CCGATCCCCGGCTTGCGC-TTCCCGCCCCTCTGGCCGGCTGAACGCCCGCACGCTCATTTCATG
*
17484995 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTC
830 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
** * * * * *
17485055 TAAGATCGGACTGGACCGAGGGTTGTGGCAGCACATACTGGGCTCGAGCATGTTCTGGGGCCGCA
1 TAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
* * * * *
17485120 TTTTTCTTTGCTGAGGCACCATCGTCAGAGCATCATTGGAGAACCTGACCGACGGCATTAGGGTT
66 TTTTTCTTCGCCGGGGCACCATCGCCAGAGCATCATCGGAGAACCTGACCGACGGCATTAGGGTT
* * ***
17485185 CCTG-CAATCGGGGGGCCTGGAGGGGTGTCCGCACATGATGTGCGATGGGTGCTGGTACTTGTTA
131 CC-GACGATCGGGGGGCC-GG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* * * *
17485249 CTTATATTGGCCCCCTATCCCTCATGAAAACTCGAGAACTCACACTCCCTTAAAGAGCATTTGAA
193 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
*
17485314 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATTGGGACACTTTTTTCAAATGGT
258 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* *
17485379 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCGTGCCAACAAAAATACAAG
323 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
* * *
17485444 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAGTTTAAAAATTCCCAAACCGC
388 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCAAACCGC
* * * * * *
17485509 AAAAAGTTTTAAAAATCATGAAAAATTGAAAACGAGTCGTCTTGCCATGAAATTTCACGTGAAGG
453 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCAAGTGAAGG
* *
17485574 CTTAAGGGACCATTGTATGAAGTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGA
518 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGA
* * *
17485639 TGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTGTCTCTGGCCGACG
583 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
* *
17485704 TAGTGCCCGCCCGCTTGTTTTGTCGGTTGGCTTAGGCATACGTAGTTCATTACCAGTCTAAGATC
648 TAGTGCCCGCCCGCTTGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * * * ** * *
17485769 AGACCGGATCGGGGGTTACAGCAGCAGGATCGACAACACATGGAGGGGGACCCAGCCAATCCCCT
713 AGACCGGACCGAGGGTTGCGGCAGCAGGATTGGCAGCACACAGAGGGGGACCC-GCCGATCCCCG
* * * *
17485834 GCTTGTGCTTCCCGCCCCTCTGACCGGCTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
777 GCTTGCGCTTCCCGCCCCTCTGGCCGGCTGAACGCCCGCACGCTCATTTCATGGGTTGACTTAGG
*
17485899 CATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
842 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* * *
17485947 TAAGATTGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
1 TAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
* * * * * *
17486012 TTTCTCTTTGTCAGGGCACCATCGCCAGAGCATCGTCGGAGAACCT-ATCC-AGCGAG-ATTGGG
66 TTTTTCTTCGCCGGGGCACCATCGCCAGAGCATCATCGGAGAACCTGA-CCGA-CG-GCATTAGG
* * * * *
17486074 GTTTCGACAATCGAGGGGGCCAGGGGGTTTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGC
128 GTTCCGACGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
*
17486139 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGA
192 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* * * * *
17486204 GGTTTTAGAGGTTTGCTACCAGTACCCATTAAAGTGTCTTAAATGGGGACACTTTTTTCAAATGG
257 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
*
17486269 TCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
322 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* * *
17486334 GGATCACGTCTACCAAGTTTGGGGCCAAAACACCTACTGAAAAAATTTTAAAAAATCTCGAAA-C
387 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATC-CCAAACC
* * * * *
17486398 ACAGAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCAAGTCAA
451 GCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCAAGTGAA
* * **
17486463 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATCAAAATGGAATTGGCGGGCAGAAATATGAA
516 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAA
* * * *
17486528 GATGTGCCTAAACCCACCTGCCACCCTATCGATCCACGACTTGCGCATCTCGTCTCTCTAGCCGG
581 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* ** * * *
17486593 CATAGTGCCCCCCCCCCGCCCGCCCGCTCATTTAATCGGCTAGCTTAGGCATACGGAGTTCATTC
646 CGTAGTG-------CCCGCCCGCTTG-T--TTT-GTCGGTTGGCTTAGGCATACGGAGTTCATTC
** * * *
17486658 CCAGTCTAAGATCAGACCAAACCGAGAGTTGCGGCAGTAGGATCGGCAGCACACAGAGGGGGACC
700 CCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATTGGCAGCACACAGAGGGGGACC
* * * * ** *
17486723 CGACCGATCCTCGGCTTGCACATCCCGCCCCGCTGGCCGGCTGAGTGCCCGCACGCTCATTTCGT
765 CG-CCGATCCCCGGCTTGCGCTTCCCGCCCCTCTGGCCGGCTGAACGCCCGCACGCTCATTTCAT
* * *
17486788 GGGTTGACCTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGATCATTCCCAGTC
829 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* * * * ***
17486849 TAAGATCGGACCAGACCGAAGGTTGCGGCAGCACATACTGGGCTTGAGCATGTGCTGGTGGAACA
1 TAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
* * ** * **
17486914 TTTTTCTTCACCGGGGAACCATCATCGGAGCATCAAAGGAGAACCTGACCGACGGCATTAGGGTT
66 TTTTTCTTCGCCGGGGCACCATCGCCAGAGCATCATCGGAGAACCTGACCGACGGCATTAGGGTT
* ** *
17486979 CCGACGAT--------CGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTCATTCTTGGCCCTT
131 CCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* * * * * *
17487036 ATATTGGCCTCTTATCCCTTATCAAACCTTGAAAACTCACACTCCCTTAAAGAGCATTTGAGATT
196 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* *
17487101 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGCGGACACTTTTTTTAAATGGTCAC
261 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
*
17487166 AAGATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA-
326 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
* * **** * *
17487230 CGACATCTATCAAGTTTTCCCCCAAAACTCCTTCCGAAAAAA-TTTAAAAGAATCCCAAACCGTA
391 C-ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAA-AATCCCAAACCGCA
* * *
17487294 AAAAGTTTCAAAAATTGTGAAAAATAGAAAATGAGTTGTCTTGCCATGAAACTTCATGTGAAGGC
454 AAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCAAGTGAAGGC
* *
17487359 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACACAAATATGAAGAT
519 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGAT
* * *
17487424 GTGCCTTAACCCACCTACCACTCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGTCGACGT
584 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG-C--CG-
* * * *
17487489 AGTGCTCACCTGCCCGCCCGCCCGTTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTTCC
645 -GCG-T-A-GTGCCCGCCCG--C--TTGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * * *
17487554 AGTCTAAGAT-ATGACCAGATCAAGGGTTGTGGCAGCAGGATTGGCAGCACACAGAGGGGGACCC
702 AGTCTAAGATCA-GACCGGACCGAGGGTTGCGGCAGCAGGATTGGCAGCACACAGAGGGGGACCC
* * * *
17487618 GGTCGATCCACGGCTT--G-----CG---C-AT--CC--C---A------CACGATCATTTCATG
766 -GCCGATCCCCGGCTTGCGCTTCCCGCCCCTCTGGCCGGCTGAACGCCCGCACGCTCATTTCATG
*
17487659 GGTTGACTTAGGCATACGGAGTTCATT--C---C----C--A--GAGTTCATTCCCAATC
830 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* * * * *
17487706 TAAGATCGGATCAGACTGAGGGTTGCGGCAGCACTTGCTGGGCACGGGCATGTGCTGGTGCCACA
1 TAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
* * * *
17487771 TTTTTCTTCGTCGGGGCACCAT---C---GC--C--C-GAGAACCTGACGGGCGGCATTACGGTT
66 TTTTTCTTCGCCGGGGCACCATCGCCAGAGCATCATCGGAGAACCTGACCGACGGCATTAGGGTT
** * * *
17487825 CCGACGATCGGGGTGGCCCGGGGGGTGTGCGCACATGATGCACGTTGGATGCTGCTACTTGGCCC
131 CCGACGATCGGGG-GG-CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* *
17487890 TTATATTGGCCTCCTGTCCCAT-ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
194 TTATATTGGCCCCCTATCCC-TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
* * * **
17487954 ATTTTACAGGTTTGCTGCCAGTAGCCATTGAAGTGTCTTAAATGGGAACACTTTTTTCAAATAAT
258 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
** * *
17488019 CACAAAATCTTGTACACTTC-AAATTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAGG
323 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
* * * * *
17488083 GATCACGTCTACCAAGTTTGGGGTCAAAACTCCTTCTAAAAAAATTTTAAAAAATCCCGAACAGT
388 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCAAACCGC
* * *
17488148 GAAAAGTTTCAAAAATCGTGAAAACTAGAAAATGAGTCGTCTTGCCATGAAACTTCAAGTCAAGG
453 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCAAGTGAAGG
* * *
17488213 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCAGGCAGAAAAATGAAGA
518 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGA
* * *
17488278 TGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCTGTCTCTCTGGTCGGCG
583 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
17488343 TAGTGCCCGCCCGCTCGCCTGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
648 TAGTGCCCGCCCGCT----T----G-T--TTT-GTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* * *
17488408 CAGTCTAAGATCAGACTGGACTGAGGGTTGCGGCAGCAGGATTGGCAGCACATAGAGGGGGACCC
701 CAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATTGGCAGCACACAGAGGGGGACCC
* * * *
17488473 GGCCGATCCCTGGCTTGCG-TATCCTGCCCCGCTGGCCGGTTGAAC
766 -GCCGATCCCCGGCTTGCGCT-TCCCGCCCCTCTGGCCGGCTGAAC
17488518 ATGCTAGGCT
Statistics
Matches: 2971, Mismatches: 401, Indels: 209
0.83 0.11 0.06
Matches are distributed among these distances:
843 1 0.00
845 1 0.00
846 32 0.01
847 11 0.00
848 1 0.00
849 2 0.00
850 2 0.00
851 3 0.00
852 3 0.00
854 3 0.00
855 359 0.12
856 182 0.06
857 90 0.03
859 1 0.00
861 1 0.00
862 1 0.00
865 2 0.00
866 1 0.00
868 3 0.00
870 39 0.01
873 1 0.00
879 1 0.00
881 2 0.00
883 1 0.00
884 1 0.00
887 2 0.00
891 454 0.15
892 318 0.11
893 438 0.15
894 105 0.04
895 3 0.00
896 10 0.00
897 2 0.00
898 12 0.00
899 4 0.00
900 3 0.00
901 126 0.04
902 298 0.10
903 433 0.15
904 19 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (889 bp):
TAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
TTTTTCTTCGCCGGGGCACCATCGCCAGAGCATCATCGGAGAACCTGACCGACGGCATTAGGGTT
CCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCAAACCGCAAA
AAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCAAGTGAAGGCTT
AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGT
GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
TGCCCGCCCGCTTGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
CCGGACCGAGGGTTGCGGCAGCAGGATTGGCAGCACACAGAGGGGGACCCGCCGATCCCCGGCTT
GCGCTTCCCGCCCCTCTGGCCGGCTGAACGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATA
CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
Found at i:17486840 original size:26 final size:26
Alignment explanation
Indices: 17486800--17486852 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17486790 GTTGACCTAG
*
17486800 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGATCATTCCCAATCTAA
*
17486826 GCATACGGAGATCATTCCCAGTCTAA
1 GCATACGGAGATCATTCCCAATCTAA
17486852 G
1 G
17486853 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGATCATTCCCAATCTAA
Found at i:17487695 original size:13 final size:13
Alignment explanation
Indices: 17487677--17487702 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
17487667 TAGGCATACG
17487677 GAGTTCATTCCCA
1 GAGTTCATTCCCA
17487690 GAGTTCATTCCCA
1 GAGTTCATTCCCA
17487703 ATCTAAGATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.31, G:0.15, T:0.31
Consensus pattern (13 bp):
GAGTTCATTCCCA
Found at i:17489333 original size:26 final size:26
Alignment explanation
Indices: 17489296--17489348 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17489286 GTTGACTTAG
17489296 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17489322 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
17489348 G
1 G
17489349 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17490231 original size:26 final size:26
Alignment explanation
Indices: 17490194--17490246 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17490184 GTTGACTTAG
*
17490194 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17490220 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
17490246 G
1 G
17490247 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17490941 original size:26 final size:26
Alignment explanation
Indices: 17490905--17490957 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17490895 GTTGGCTTAG
17490905 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17490931 GCATACGGAGTTCATTCCGAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17490957 G
1 G
17490958 ATCGGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17491847 original size:26 final size:26
Alignment explanation
Indices: 17491811--17491860 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
17491801 GACTTAGGCA
17491811 TACGGAGTTCATTCCCAGTCTAAGCG
1 TACGGAGTTCATTCCCAGTCTAAGCG
*
17491837 TACGGAGTTCATTTCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
17491861 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCG
Found at i:17493090 original size:26 final size:26
Alignment explanation
Indices: 17493054--17493106 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17493044 GTTGGCTTAG
17493054 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
**
17493080 GCATACGGAGTTCATTCTGAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17493106 G
1 G
17493107 ATCGGATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17493989 original size:26 final size:26
Alignment explanation
Indices: 17493953--17494002 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
17493943 GACTTAGTCA
*
17493953 TACGGAGTTCATTCCCAGTCTAAGCG
1 TACGAAGTTCATTCCCAGTCTAAGCG
*
17493979 TACGAAGTTCATTTCCAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
17494003 ATCGGACCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCG
Found at i:17494964 original size:159 final size:159
Alignment explanation
Indices: 17494695--17495042 Score: 471
Period size: 159 Copynumber: 2.2 Consensus size: 159
17494685 TCAGTGGGCT
**
17494695 TAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCAAAGGTTGCGGCAGCAGGATCG
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAAGGTTGCGGCAGCAGGATCG
* * ** * *
17494760 ATAGCACACAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCAGCTAAT
66 ACAACACACAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCAACTAAG
*
17494825 CAACTGCACGCTCGTTTCGTGGGTTGACC
131 CAACCGCACGCTCGTTTCGTGGGTTGACC
* * ** * *
17494854 TAGGCATACAGAGTTCATTCCCAGTCTGAGATCAGACCAGACTGAGGGTTGCGGCAGTAGGATCG
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAAGGTTGCGGCAGCAGGATCG
* ** * * * * *
17494919 GCAACATGCAGAGGGGGACCCGACCGATCCCTGACTTGCGTATCCCGCCCGTCTGGCCAACTGAG
66 ACAACACACAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCAACTAAG
**
17494984 CGCCCGCACGCTCGTTTCGTGGGTTGACC
131 CAACCGCACGCTCGTTTCGTGGGTTGACC
17495013 TAGGCATACGGAGTTCATTCCCAGTCTAAG
1 TAGGCATACGGAGTTCATTCCCAGTCTAAG
17495043 CATACAGAGT
Statistics
Matches: 162, Mismatches: 27, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
159 162 1.00
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (159 bp):
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAAGGTTGCGGCAGCAGGATCG
ACAACACACAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCAACTAAG
CAACCGCACGCTCGTTTCGTGGGTTGACC
Found at i:17495052 original size:26 final size:26
Alignment explanation
Indices: 17495016--17495073 Score: 107
Period size: 26 Copynumber: 2.2 Consensus size: 26
17495006 GTTGACCTAG
*
17495016 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17495042 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17495068 GCATAC
1 GCATAC
17495074 GGTGTGGCAG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17495205 original size:26 final size:26
Alignment explanation
Indices: 17495176--17495228 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17495166 GGTGACTTAG
*
17495176 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
**
17495202 GCATACGGAGTTCATTCTTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17495228 G
1 G
17495229 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17495227 original size:160 final size:161
Alignment explanation
Indices: 17494928--17495228 Score: 462
Period size: 161 Copynumber: 1.9 Consensus size: 161
17494918 GGCAACATGC
* * *
17494928 AGAGGGGGACCCGACCGATCCCTGACTTGCGTATCCCGCCCGTCTGGCCAACTGAGCGCCCGCAC
1 AGAGGAGGACCCGACCGATCCCTGACTTGCGCATCCCGCCCCTCTGGCCAACTGAGCGCCCGCAC
*
17494993 GCTCGTTTCGTGGGTTGACCTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATT
66 GCTCGTTTCATGGGTTGACCTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATT
17495058 CCCAGTCTAAGCATACGGTGTGGCAGCACGT
131 CCCAGTCTAAGCATACGGTGTGGCAGCACGT
* * *
17495089 AGAGGAGGACCCGACCGATCCCTGGCTTGTGCATCCCGCCCCTCTGGCCAGA-TGAGCGCCTGCA
1 AGAGGAGGACCCGACCGATCCCTGACTTGCGCATCCCGCCCCTCTGGCCA-ACTGAGCGCCCGCA
* * * *
17495153 CGTTCGTTTCATGGG-TGACTTAGGCATACGGAGTTTATTCCCAGTCTAAGCATACGGAGTTCAT
65 CGCTCGTTTCATGGGTTGACCTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCAT
**
17495217 TCTTAGTCTAAG
130 TCCCAGTCTAAG
17495229 ATCAGACCGG
Statistics
Matches: 126, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
160 56 0.44
161 69 0.55
162 1 0.01
ACGTcount: A:0.20, C:0.30, G:0.27, T:0.24
Consensus pattern (161 bp):
AGAGGAGGACCCGACCGATCCCTGACTTGCGCATCCCGCCCCTCTGGCCAACTGAGCGCCCGCAC
GCTCGTTTCATGGGTTGACCTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATT
CCCAGTCTAAGCATACGGTGTGGCAGCACGT
Found at i:17496112 original size:26 final size:26
Alignment explanation
Indices: 17496076--17496127 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
17496066 TTGACCTAGA
17496076 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
*
17496102 CATACGGAGTTTATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
17496128 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:17496237 original size:185 final size:185
Alignment explanation
Indices: 17495916--17496335 Score: 545
Period size: 185 Copynumber: 2.3 Consensus size: 185
17495906 GTTGGCTTAG
* * ** * * * *
17495916 GCATACGGAGTTCATTCCCAATCCAAGATTGGACCAGACCGAGGGTTGCAGTAGTAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGTAGGATCGACA
* * * *
17495981 GCACACAAAGATGGACCCGACCGATCCCCAGCTTACGCATCCCGCCCCTCTGGCCAGCTGATCGG
66 ACACACAAAGAGGGACCCGACCGATCCCCAGCTTACGCATCCCGCCCCTCTGGCCAGCTGAGCGC
*
17496046 CCGCACGCTCATTCCATGGGTTGACCTAGACATACGGAGTTCATTCCCAGTCTAA
131 CCGCACGCTCATTCCATGGGTTCACCTAGACATACGGAGTTCATTCCCAGTCTAA
* * *
17496101 GCATACGGAGTTTATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGGTAGTAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGTAGGATCGACA
* * * * * * *
17496166 ACACGCAAAGGGGGACCCGATCGATCCCCGGCTTGCGCATCTCGCCCTTCTGGCC-GACTGAGCG
66 ACACACAAAGAGGGACCCGACCGATCCCCAGCTTACGCATCCCGCCCCTCTGGCCAG-CTGAGCG
* * *
17496230 CCCGCACGCTCATTTCGTGGGTTCACCTAGGCATACGGAGTTCATTCCCAGTCTAA
130 CCCGCACGCTCATTCCATGGGTTCACCTAGACATACGGAGTTCATTCCCAGTCTAA
** * * *
17496286 GCATATAGAGTTCATTCTCAGTCTAAGATCAAACCGGACTGAGGGTTACG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACG
17496336 ACAGCACATG
Statistics
Matches: 201, Mismatches: 33, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
184 1 0.00
185 200 1.00
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.21
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGTAGGATCGACA
ACACACAAAGAGGGACCCGACCGATCCCCAGCTTACGCATCCCGCCCCTCTGGCCAGCTGAGCGC
CCGCACGCTCATTCCATGGGTTCACCTAGACATACGGAGTTCATTCCCAGTCTAA
Found at i:17497186 original size:26 final size:26
Alignment explanation
Indices: 17497150--17497202 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17497140 GTTGACTTAC
17497150 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
*
17497176 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
17497202 G
1 G
17497203 ATCGGACAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:17499141 original size:905 final size:902
Alignment explanation
Indices: 17496101--17499754 Score: 5028
Period size: 905 Copynumber: 4.1 Consensus size: 902
17496091 CCCAGTCTAA
* ** * * *
17496101 GCATACGGAGTTTATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGGTAGTAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAAGATCGGCA
* * * * * *
17496166 ACACGCAAAGGGGGACCCGATCGATCCCCGGCTTGCGCATCTCGCCCTTCTGGCCGACTGAGCGC
66 GCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * * * **
17496231 CCGCACGCTCATTTCGTGGGTTCACCTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATAGAG
131 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAG
* * * * * * * *
17496296 TTCATTCTCAGTCTAAGATCAAACCGGACTGAGGGTTACGACAGCACATGCTGGGCTCGAGCATG
196 TTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGATAGCACATGCTGGGCTCGGGCATG
* * * **
17496361 TGCTGGTGCCGCATTTTCCTTCGTCGGGGCAACATCGTCGGAGCATCGTCGGAGAACCTGA-CTG
261 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGATC-G
* * * *
17496425 GCGGCATAGAGGTTCCGGCGATCGGAGGGGCCGGGGGGAGTGTGCGCACATGATGTGCAATGGGT
325 GCGGCATTG-GGTTCCGACGATCGGGGGGGCCGGGGGG-GTGTGCGCACATGATGTGCGATGGGT
* *
17496490 GCTGGTACTTGGCCCTTATATTGGCCTCCTATCCATCATCAAACCTCGAGAACTCACACCCCCTT
388 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * * *
17496555 AATGAGCATTTGATATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGACAC
453 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACAC
17496620 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
518 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * * *
17496685 AAAAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCGTTCCGAAGAAATTTTAAA
583 AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTT-AA
* *
17496750 AAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGA
647 AAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
*
17496815 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCAT
712 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * * * *
17496880 ATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGGTCCACGGCTTGCACATCCCG
777 ACAGAAATATGAAGATGTGCCTAAACCCACATACCACCCTATCGATCCACGGCTTGCGCATCCCA
* * * *
17496945 TCT-T-TAGCAGACGTAGTGCCCA-----------CCCGCTCGTTTCATCGGTTGGCTTAG
842 TCTCTCTGGCCGGCGTAGTGCCCACCCGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * *
17496993 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA--TAGGGTTGCGGCAGCACGATCGGAA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAAGATCGGCA
* * * * **
17497056 GCAGGCCGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCTCGCCCCTCTCACCGGCTGAGCGC
66 GCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* *
17497121 CCGCACGCTCGTTTTGTGGGTTGACTTACGCATA-AGGAGTTCATTCCCAGTCTAAGCATACGGA
131 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACA-GAGTTCATTCCCAGTCTAAGCATACGGA
* * * * *
17497185 GTTCATTCCCAGTCTAAGATCGGACAAGACCGAGGGCTGCGACT-GCACATGCTGGGCTCAGGCA
195 GTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGA-TAGCACATGCTGGGCTCGGGCA
* * * * **
17497249 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGTACCATCACTGG-GCATCGCCGGAGAACCTGGCC
259 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGATC
* *
17497313 GGCGGCATTGCGATTCTGACGATCGGGGGGGCC--GGGGGTGTGCGCACATGATGTGCGATGGGT
324 GGCGGCATTG-GGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGT
* * *
17497376 ACTGGTACTTGGCCCTTATATTGGCCCTCTATCTCTCATCAAACCTCGAGAACTCACACCCCCTT
388 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
17497441 AAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
453 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACAC
* *
17497506 TTTTTTCAAATGGTCACAAAATCTTGTACAGTTCGAGTTTATAGCTGAATTTTTTTGTGCATGCC
518 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
*
17497571 AAAAAAAATACAAGGATCACGTATACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAA
583 AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAA
** *
17497636 AAAT-CTCGAACCACAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
648 AAATCCT-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
*
17497700 AACTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
712 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * * * *
17497765 GCAGAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCG
777 ACAGAAATATGAAGATGTGCCTAAACCCACATACCACCCTATCGATCCACGGCTTGCGCATCCCA
* * *
17497830 TCTCTCTGGCCGGCGTAGT-CCC-CGC-CCGCCCGCCTGCTCGTTTCGTCGGTTGGCATAG
842 TCTCTCTGGCCGGCGTAGTGCCCACCCGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * *
17497888 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACC-GAACTGAGGGTTACGGTAGCAAGATCAGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTACGGCAGCAAGATCGGC
** * *
17497952 AGCACATAGAGTGGGACCCGACCGATCCCCGGCTTGCGTATCCCGCCCCTCTGGCCGGCTGAGCG
65 AGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * * * * *
17498017 CCCGTACGCTCGTTTCGTGGATTGACTTAAGCATGCAGAGTTCATTCCCAGTCTAGGCATATGGA
130 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGA
* * * * * *
17498082 GTTCATTCCCAATCTAAGATC-GAACCAAACTGCGGGTTGCAATAGCACATGCTGGGCTTGGGCT
195 GTTCATTCCCAATCTAAGATCAG-ACCAGACCGAGGGTTGCGATAGCACATGCTGGGCTCGGGCA
* * *
17498146 TGTGCTGGTGCCGCATTTTTCATCGTCGGGGCACCATCGTCGGAGCATCACCGAAGAACCTGATC
259 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGATC
* * *
17498211 GGTC-GCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATCATGTGTGATGGG
324 GG-CGGCATT-GGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGG
* *
17498275 TGCTGGTACTTGGCCCTTATTTTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCACACCCCCT
387 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* *
17498340 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCAAGTAGCCATTAATGTGTCTAAAATGGGGACA
452 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACA
* *
17498405 CTTTTTTCAAATGGTCACAAAATCTTTTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGC
517 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * * * *
17498470 CAACAAAATATACAAGGATCAAGTTTACCAAGTTTGGGGCGAAAACTCCTTCCGAAAAAATTTTA
582 CAA-AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTA
* ** * *
17498535 AAAAATCCTAAATTGTAAAAAGTTTAAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAAG
646 AAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
* * *
17498600 AAACTTCACCTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCATAAAAATGGCGTTGGCA
711 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* *
17498665 CACAGAAATATGAAGATGTGCCTAAACCCACATACCACCCTATCGATCCACGGCTTGCGCATCCT
776 TACAGAAATATGAAGATGTGCCTAAACCCACATACCACCCTATCGATCCACGGCTTGCGCATCCC
*
17498730 ATCTCTCTGGCCGGCGTAGTGCCCACCCGCTCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAG
841 ATCTCTCTGGCCGGCGTAGTGCCCACCCGC-CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * **
17498793 GTATATGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCAAGGGTTGTGGCAGCAAGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAAGATCGGCA
* * * * * *
17498858 GCATGCAGAGGGGGGCTCGACTGATCCCCGGCTTGCACATCCCGCCCCTCTGGCTGGCTGAGCGC
66 GCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * * *
17498923 CCGCACGCTCGTTTCGTGGGTTGACTTTGGCATACAAAGTTGATTCCCAGTCTAAGAATACGGAG
131 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAG
* * * *
17498988 TTCATTCCCAATTTAAGATTAGACCAGACCGAGGGTTGTGGTAGCACATGCTGGGCTCGGGCATG
196 TTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGATAGCACATGCTGGGCTCGGGCATG
* * * *
17499053 TGCTAGTGTCGCATTTCTCTTC-TCCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGATCA
261 TGCTGGTGCCGCATTTTTCTTCGT-CGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGATCG
* * * * *
17499117 GCGACATTGGGTTTCCGACGATCGGGGGGGCTGGGGAGGTGTGCGCACATGATGTGTGAGGGGTG
325 GCGGCATTGGG-TTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * * *
17499182 CTGGTACTTGGCCCTTATATTGGCCTCGTATCCCTCATCAAACCTTGAGAACTCACACTCCCTTA
389 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * *
17499247 AAGAGCATTTGACATTTTACAGTTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGAGGACACT
454 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACT
* * *
17499312 TTATTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTACTTTTTTTGTGCATGCCA
519 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* *
17499377 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAAATTTTAAAA
584 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAA
* * *
17499442 AATCCCGAACCGTAAAAATTTTCAAAAATCATGAAAAATAGAAAACGAGTCGGCTTGCCATGAAA
649 AATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * *
17499507 CTTCACGTGAAGCCTTAAGGGACCATTGTATCAATTTACAAGCCATAAAAATGGCATTGGCATGC
714 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATAC
**
17499572 AGAAATATGAAGATGCACCTAAACCCACCA-ACCACCCTATCGATCCACGGCTTGCGCATCCCAT
779 AGAAATATGAAGATGTGCCTAAACCCA-CATACCACCCTATCGATCCACGGCTTGCGCATCCCAT
* * * * * *
17499636 CTCTCTGGCCAGCATAGTGCCTACCCACCCCCCGCCTGCTGCTCGTTTTGTCGGTTGGCTTAG
843 CTCTCTGGCCGGCGTAGTGCCCACCCGCCGCCCGCC--C-GCTCGTTTCGTCGGTTGGCTTAG
* * * * *
17499699 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTCCGACAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCA
17499755 CATACTGGGC
Statistics
Matches: 2435, Mismatches: 285, Indels: 70
0.87 0.10 0.03
Matches are distributed among these distances:
884 2 0.00
885 184 0.08
886 270 0.11
887 14 0.01
889 44 0.02
890 219 0.09
892 35 0.01
894 1 0.00
895 58 0.02
896 2 0.00
897 217 0.09
898 44 0.02
899 2 0.00
900 212 0.09
901 250 0.10
902 5 0.00
903 9 0.00
904 260 0.11
905 538 0.22
906 69 0.03
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (902 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAAGATCGGCA
GCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAG
TTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGATAGCACATGCTGGGCTCGGGCATG
TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGATCGG
CGGCATTGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAA
TCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACAG
AAATATGAAGATGTGCCTAAACCCACATACCACCCTATCGATCCACGGCTTGCGCATCCCATCTC
TCTGGCCGGCGTAGTGCCCACCCGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
Found at i:17500604 original size:26 final size:26
Alignment explanation
Indices: 17500568--17500624 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
17500558 TGGGTTGACT
*
17500568 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGAATACGGAGTTCATTCCCAGTC
* *
17500594 TAAGAATACGGAGTTGATTCTCAGTC
1 TAAGAATACGGAGTTCATTCCCAGTC
17500620 TAAGA
1 TAAGA
17500625 TCGGACCAGA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
TAAGAATACGGAGTTCATTCCCAGTC
Found at i:17501474 original size:26 final size:26
Alignment explanation
Indices: 17501438--17501490 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17501428 GTTGACTTAG
*
17501438 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTATAA
*
17501464 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACAGAGTTCATTCCCAGTATAA
17501490 G
1 G
17501491 ATCGGAACGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTATAA
Found at i:17503225 original size:26 final size:26
Alignment explanation
Indices: 17503196--17503248 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17503186 GTTGACTTAG
17503196 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
*
17503222 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
17503248 G
1 G
17503249 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:17505897 original size:26 final size:26
Alignment explanation
Indices: 17505860--17505912 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17505850 GTTCACTTAG
*
17505860 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17505886 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17505912 G
1 G
17505913 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17507239 original size:899 final size:898
Alignment explanation
Indices: 17504080--17518105 Score: 16348
Period size: 899 Copynumber: 15.8 Consensus size: 898
17504070 GTTGACTTAG
* * * * *
17504080 GCATACGGAGTTCATTCCCAGTGTAAGATCAGA-CTGGACTGAGGGTTACGGCAGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-GGACCGAGGGTTGCGGCAGCACATGCTGG
* ** * * *
17504144 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTTTTTGGGGCACCATCGTCGGTGCATCGTTGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
** * * * *
17504209 AACCTGACCGACAACATTTGGGTTCTGACGATTGGGGGGGCCAGGGGGTGTGCGCACATGATGTG
130 AACCTGACCGACGGCA-TTGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
17504274 CGATGGGTGATGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
17504339 A-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
17504403 GGGGACACTTTTTTCAAATGGACACAAAATCTTGTACACTTCAAGTTTTTACCTGAATTTTTTTT
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
17504468 TGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
17504533 ATTTGAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATG----A-A-AAAACGAGTCATCTT
454 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
17504592 GCCATGAAACTTCACGTGAAGGCTTAATGGACCATTGTATAAATTTACAAGCCATAATAAA-GGC
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA-AAATGGC
* *
17504656 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
583 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
17504721 GCATCCCGTCTCTCTGGCCGACGTAGT----GCCCGCCCGCCCGCTCATTTTGTCGGTTGGCTTA
648 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
** * *
17504782 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACTGAGGGTTACGGTAGCAGGATCAGC
713 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGTAGCAGGATCGGC
* ** ** * ** *
17504847 AACACATAGAGGGGGACCCGACCGATCCTCGGCTTATGCATCCTC-CCCCTCTGGCCGGCTGAGT
778 AGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCC-CGCCCCTCTGGCCGGCTGAGC
* * * *
17504911 GCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATATGGAGTTTATTTCCAGTCTCAA
842 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT-AA
* *
17504969 -CATACGGAGTTCATTCCCAGTCTAAGATCGGA-CTGGACTGAGGGTTCCCGGCAG-ACATGCTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-GGACCGAGGGTT-GCGGCAGCACATGCTG
* * * * **
17505031 GGCTCGGGGCATGTGCTGGTGCCGTA-TTTTCTTCATGGGGGCACCCATCATCGGAGCATCACCG
64 GGCTC-GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA-CCATCGTCGGAGCATCGTC-
* * *
17505095 GGAGAACCTGACTGACGGCATTGGGATTTCTTGGCGGATCGCGGGGGCCGAGGGGGTGTGTGTGC
126 GGAGAACCTGACCGACGGCATTGGG--TTC-CGGC-GATCGGGGGGGCC---GGGG-G-GTGTGC
17505160 GGC-CAATAGATGTG-GCAGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
182 -GCAC-AT-GATGTGCG-A-TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
** * * *
17505223 AAAATGTCTGAGAACTCACCACCCCCTTAATGAGCA-TTGAGATTTTATAGGTTTTGTTGCCAGT
242 -AAACCTC-GAGAACTCA-CACCCCCTTAAAGAGCATTTGAGATTTTACAGG-TTTGCTGCCAGT
* * *
17505287 AGCCATTAAACTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGC
303 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
*
17505352 GTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGG
368 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
** * * * * * ** * *
17505417 GAAAAAAATCCTTCCGAAAGAATTTTGAAAAATCCCGAACCGTAAAAATTTTTGAAAATCATAAA
433 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAA
* * *
17505482 AAATAGAAAACGAGTCATCTTGCCATCAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAAT
498 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* ** * *
17505547 TTACAAGCCATAAAAATGGTATTGGCACACAAAAATATGAAGATATGCCTAAACCCACCTACCAC
563 TTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* *
17505612 CCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGAGTAGTGCCCGCCTGCCCGCCCGC
628 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-CC-GCCCGCCCGC
* *
17505677 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACT
689 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACT
* * * ** * * * * *
17505742 GAAGGTTGTGGCAGCA-GATTCTTCAGGACACAGAGGGTGACCC-GACTGATCCCTGG-TTGCGC
754 GAGGGTTGCGGTAGCAGGA-TCGGCAGCACGCAGAGGGGGACCCGGTC-GATCCCCGGCTTGCGC
** *
17505804 ATCCCGCCCCTCTGGCTAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTCACTTAGGCATACGGA
817 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
17505869 GTTCATTCCCAGTCTAA
882 GTTCATTCCCAGTCTAA
* * * * *
17505886 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGGGGCAGCACATACTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * **
17505951 CTAGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* ** * *
17506016 ACCTGACCGACAGCATTTGGGTTCTAGTGATCGGGGGGGCCGGGGGGGTGTGTGCACATGATGTG
131 ACCTGACCGACGGCA-TTGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
* * * *
17506081 CGATTGGTGCTGGTACTTGGCCCTTATGTTGACCCCCTATCCCTCATCAAACCTCAAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
17506146 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
17506211 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTA
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
** * * * *
17506275 TGCATGTGAACAAAGATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAACTCCTTCTGAAAGA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
17506340 ATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGGGTCATCTT
454 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * *
17506405 GCCATGAAACTTCACATGAAGGCTTAATGGACCATTGTGTGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *** * *
17506470 TTGGCATGTAGAAATATGAAGATGTGCCTAAACTTGCCTACCACCCTATCAATCCACGGCTTGTG
584 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * **
17506535 CATCCCATCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACCCGCTCGTTTCGTTAGTTGGCTTAG
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
** * ** * * *
17506600 GCATACGGAGTTCATTCATAGTCTAAGATCCGACCAAACTGAGGGTTGCAGTAGTAGGATCGACA
714 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGTAGCAGGATCGGCA
* * * * * *
17506665 GCACACAAAGGGGGACCCGGTCGATCCCCGGCTTGTGCATCCCTCCCCTCTGGCTGACTGAGCGC
779 GCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * *
17506730 CCGTACGCTCGTTTCGTGGGTTAACTTAGGCGTACGGAGTTCATTCCCAGTCTAA
844 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
17506785 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
*
17506850 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * *
17506915 ACCTGACCGACGACATTAGGGTTTCGGCGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGACGGCATT-GGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
17506980 GATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
17507045 CCCCCTTAAAGAGCATTTGAGATTTTACAGGATTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
17507110 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTCAGCTGAATTGTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
17507175 GCATGCCAACAAAAATACAAGGATCACGCCTACCAAGTTTAGGGCCAAAACTCCTTCCGAAAGAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * **
17507240 TTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATAATGAAAAATAGAAAACGAGTCGTCTTG
455 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
*
17507305 CCATGAAACTTCACGTGAAGGCTTAAGGGAGCATTGTATGAATTTACAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
** * *
17507370 TGGCACACAGAAATATGATGATGTGCCTAAACCCACCTACCACACTATCGATCCACGGCTTGCGC
585 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * ** * ** *
17507435 ATCCCATCTTTCTGGCCGACGTAGT----GCCCATCCGCCTGCTCGTTTCGTCCATTGACTTAGG
650 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * ** * * *
17507496 CATACAGAGTTCATTCCTAGTCTAAGATCAGACCAAACCGAGGGTTGCGATAGCAGGATCAGCAG
715 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGTAGCAGGATCGGCAG
* ** ** * *
17507561 CACGCAGAGGGGGACCTGGAAGATCCTTGGCTTGCGCATCCCG-CCCTCTAG-CGGCTGA-CACC
780 CACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
17507623 CGCCACGCTC-TTTC-T-GGTTGAC-T-----TA--G-G--CA-T---A--C--A
845 CG-CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
17507656 --A-A---A-TTCATTCCCAGTCT-AGATCGGA-CGGACCCGAGGGTTGTGGCGGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGA-CCGAGGGTTGCGGCAGCACATGCTGG
* * * * ** * **
17507712 GCTCCGGG-ATGTACTGGTGCCACATTTTTCTTTG-CTGGGGCACTATCACCGGAGTATCACCGG
65 GCT-CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGTCGG
17507775 AGAACCTGACC-ACCGGCATTGGGGTTCCGAGCGATC-----GGCC----GGTGTGCGCACATGA
128 AGAACCTGACCGA-CGGCATT-GGGTTCCG-GCGATCGGGGGGGCCGGGGGGTGTGCGCACATGA
* * * * *
17507830 TCT-CAATGGG-ACTGGTAC-TGGCCCTTATA-TGTG-CCCCGAT-CCTCATCAAACCTTG-GAA
190 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG-GCCCCCTATCCCTCATCAAACCTCGAGAA
* *
17507888 CT----CTCCCTTAAAGAG-A-ATGAGA-TTTAC-GG--T-C-GCCAGTAGCCATTAAAGTGTCT
254 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
17507941 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
319 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * * * *
17508006 TTTTTTGCACGCCAACAAAAATACGAGGATTACGTCAATCAAGTTTGGGGCCAAAACTCCTT-C-
384 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* ** * *
17508069 ----------------T---GAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGGGTT
449 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
17508115 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
514 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
** *
17508180 TGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGC
579 TGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * *
17508245 TGGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCCGCCCGCTTGTTTCTTCGA
644 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCGCCCGCCCGCCCGCTCGTTTCGTCGG
* * ** ** **
17508310 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCAAGGGTTGCGACAGTG
705 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGTAGCA
* * * * *
17508375 GGGTTGGCAGCACGTAGAGGGGGACCCGGT-GAATCCCTGGCTTGTGCATCCCGCCCCTCTGGCC
770 GGATCGGCAGCACGCAGAGGGGGACCCGGTCG-ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * *
17508439 GGTTGAGTGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
834 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
17508504 G-AT-C--AG---------A--C------C-GA----ACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * *
17508543 CTGGGGCATTTGCTGGTGCCGTATTTTTCTTTGTCGAGGTACCATCGTCGGAGCATCGTCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* ** * * * * *
17508608 ACCTGATCGGTGGCATTGGGGTTCCGACGATC-GGGGGGCCGGTGGGTCTACACACATGATGTGC
131 ACCTGACCGACGGCATT-GGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
17508672 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCGCTCATCAAACCTAGAGAACCCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
17508737 CCCCCTTAAAGAGCATTTGAGATTTTACATGTTTGCTGCCAAGTAGCCATTAAAGTGTCTGAAAT
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC-AGTAGCCATTAAAGTGTCTGAAAT
* * *
17508802 GGGGACACTTTTTTCAAATGGTCACAAAATATTGTACGCTTCGAGTTTTTACCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
17508867 TGCATGCCAACAAAAATGCAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTCATTCCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * ** * *
17508932 ATTTTAAAATATCCCGAACCGTAAAAGGTTTTGAAAATAGTAAAAAATAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
17508997 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * ** *
17509062 TTGGAACATAGAAATATGAAGATGTGCCTAAAGGCAACTACCACCCTATCGATCCACGGCTTGCG
584 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * * *
17509127 CATCCTGTCTCTCTAGCTGGCGTAGCGCCCGCCCACCCGTCCGCCCGCTCATTTCGTTGGTTGGC
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCG----CCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * * *
17509192 TTAGGCATATGGAGTTCATTCCCAGTCTAAGATTGGACCGGATTGAGGATTACGGTAGCAGGATC
710 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGTAGCAGGATC
* * * ** *** * **
17509257 AGCAACACACAGAGGGGGACCCGACCGATCTTTGGCTTGCACATCTTGCCCCTCTGGCCGGCTGA
775 GGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * * *
17509322 GCGCCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTTATTTCCAGTCTCA
840 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
17509381 GCATACGGAGTTCATTACCAGTCTAAGATCGGA-CTGGACTGAGGGTTGCGGCAGCACATGCCGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-GGACCGAGGGTTGCGGCAGCACATGCTGG
** ** * **
17509445 GCTCGGGCATGTGCTGGTGCCATATTTTTCTTCACCGAGGCACCATCG-CTGGAGCATCACCGGA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCGTCGGA
* ** *
17509509 GAACCTGACCAACGGCATTGGGGTTCTAGCGATCCGGGGGGCCGGAGGGGTGTGTGCGCACATGA
129 GAACCTGACCGACGGCATT-GGGTTCCGGCGATCGGGGGGGCC-G-GGGG-GTGTGCGCACATGA
* * **
17509574 TGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGACCCCCTATCCCTCATCAAATGTCGAGAAC
190 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * *
17509639 TCACACCCCCTTAATGAGCATTTGAGCTTTTACAGGTTTGCTGCCAAGTAGCCACTAAAGTGTCT
255 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC-AGTAGCCATTAAAGTGTCT
* * * *
17509704 GAAATGGGGACACTTTGTTCAAATGGTCACAAAATATTGTACGCTTCGAGTTTTTACCTGAATTT
319 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * *
17509769 TTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTTCG
384 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* * * *
17509834 AAAAAATTTTGAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
449 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
*
17509899 GTCTTGCGATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
514 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*
17509964 TGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACGCACCTACCACCCTATCGATCCACGGC
579 TGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * *
17510029 TTGCGCATCCCGTCTCTATGGCCGGCGTAGTGCCTGCCCGCCCGCCTGCCCGCTCGTTTTGTCGT
644 TTGCGCATCCCGTCTCTCTGGCCGGCGTA--G--TGCCCGCCCGCCCGCCCGCTCGTTTCGTCGG
* * * * * **
17510094 TTGGCTTAGGCATACGGAGTTCATTCTCAGTCTAAGATTGGACTGGAATAATTGTTGCGGTAGCA
705 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGTAGCA
* * * * * * *
17510159 GGATCGGTAGCACGTAGAGGGGGACCC-GACTGATCCCTGGCTTGCACATCCCGCCCCTCTAGTC
770 GGATCGGCAGCACGCAGAGGGGGACCCGGTC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * * *
17510223 GGTTGAGTGCCCGCACGCTCGTTTTGTGGATTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
834 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
17510288 G-AT-C-G-G---------A--C-AAG-TC---T------GAGGGTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * * * *
17510327 CTCGAGCATGTACTCGTGTCGTATTTTTCTT-GAACAGGGCACCATCATCGAAGCATCGTCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG-TCGGGGCACCATCGTCGGAGCATCGTCGGAG
* * * ** * * *
17510391 AACCTAACCGGCAGCATTAGGGCCCCGACGATC------G--AGGGGGTGTGCACACATGATGTG
130 AACCTGACCGACGGCATT-GGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
17510448 TC-ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
194 -CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
17510512 CACCCCCTTAAAGAGCATTTGATAGTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
17510577 TGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
17510642 CTGCATGCCAACAAAAATACAAGGATCACGTTTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * * *
17510707 AATTTTCAAAAATCTCAAACCACAAAAAGTTTCAAAAATCGTAAAAAATAGAAAACGAGTCGTCT
453 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
17510772 TGCCATGAAACTTCACTTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
17510837 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
583 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
17510902 GCATCCCGTCTCTCTGGCCGGCGTAGT--------GCCCGCCCGCTCATTTCATCGGTTGGCTTA
648 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
** * * * * * * *
17510959 GGCATACAAAGTTCATTCCCAATCTAAGATAGGACTGGACTGAGGGCTGGGGCAGCAAGATCGGC
713 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGTAGCAGGATCGGC
* * * * * * *
17511024 AGCACGCAGAGGTGGACACGGTTGATCCCCGGCTTGCGTATACCACCCCTCTGGCCGGCTGAGAG
778 AGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* **
17511089 CCCGCACGCTCGTTTCGTTGGTTGACTTAGGCATATAGAGTTCATTCCCAGTCTAA
843 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
17511145 GAATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGAGTTGAGGCAGCACATGCTGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
17511210 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA---TC---G--TC-T--GAAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * *
17511264 ACCTGACCGACGACATTGGGGTTCCGGTGATCGGGGGGGTCGGGGGGGTGTGCGC-CAATGATGT
131 ACCTGACCGACGGCATT-GGGTTCCGGCGATCGGGGGGG-CCGGGGGGTGTGCGCAC-ATGATGT
* * * *
17511328 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTTTCCCTCATCAAACCTCGAAAACCCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
17511393 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
17511458 TGGGGACACTTTTTTGAAATGGTCACAAAATATTGTACACTTCGAGTTTTTACCTAAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
17511523 TTGCATGCTAACAAAAATACAAGGATCACGTCTACAAAGTTTAGGGCCAAAACTCATTCC-AAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * ** * *
17511587 GAATTTTAAAAAATTCAGAACCGTAAAAAGTTTTGAAAATAGTGAAAAATGGAAAACGAGTCGTC
453 -AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
17511652 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
17511717 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACGCATCTACCACCCTATCGATCCACGGCTTG
582 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
** * ** * *
17511782 CGCATCCTATCTCTCTAGTTGGCGTAGTGCCCGCCCACCCGTCCGCCCGCTCATTTCGTCGGTTG
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG----CCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * * * * *
17511847 GCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGACCGAATTGAGGATTACGGTAGCAGGA
708 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGTAGCAGGA
* * * * * *
17511912 TCAGCAACACACAGAGGGGGACCCGATCGATCCTCGGCTTGCGCATCCTGCCCCTCTGGCCGGCT
773 TCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * * * * *
17511977 GAGCGCCCGTACGCTCGTTTCATGAGTTGACTTAGGCATATGGAGTTTATTTCCAGTCTCA
838 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
17512038 GCATACGGAGTTCATT-ACAGTCTCAGATCGGA-CTGGACTGAGGGTTGCGGCAGCACATGCCGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-GGACCGAGGGTTGCGGCAGCACATGCTGG
* ** * **
17512101 GCTCGGGCATGTGCTGGTGCCGTA-TTTTCTTCACCGGGGCACCATCGCCGGAGCATCACCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
* * * *
17512165 AACCTGACCGACAGCGTTGGGGTTCTGGCGATCCGGGGGGCCGGGGGGGTGTGTGCGCACATGAT
130 AACCTGACCGACGGCATT-GGGTTCCGGCGATCGGGGGGGCC--GGGGG-GTGTGCGCACATGAT
*
17512230 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACATCGAGAACT
191 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
*
17512295 CACACCCCCTTAATGAGCATTTGAGATTTTACAGGTTTGCTGCCAAGTAGCCATTAAAGTGTCTG
256 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC-AGTAGCCATTAAAGTGTCTG
* * * * *
17512360 AAATGGGGACACTTTTTTCAAATGGCCACAAAATATTGTACGCTTCGAGTTTTTACCTGAATGTT
320 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * * *
17512425 TTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAACTTTGGGGCCAAAAATCCTTTCAA
385 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
*
17512490 AAAAATTTTGAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
450 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* * *
17512555 CCTTGCCCTAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
17512620 GGCATTGGCACATAGAAATATGAAGATGTGCCTAAACGCACCTACCACCCTATCGATCCACGGCT
580 GGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * *
17512685 TGCGCATCCCGTCTCTATGGTCGGCGTAGT--------GCCTGCCCGCTCATTTTGTC-GTTCGG
645 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTT-GG
** * * * ** *
17512741 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAAGACTGGAATAATTGTTGCGGCAGCAGGAT
709 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGTAGCAGGAT
* * * * ** *
17512806 CGGTAGCAC-AAAAGGGGGACCC-GACTGATCCCTAGCTTGCGCATCCCGCCCCTCTGGTCGGCT
774 CGGCAGCACGCAGAGGGGGACCCGGTC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * *
17512869 GAGTGCCCGCACGCTCGTTTTGTGGATTGACTTAGGCATACTGAGTTCATTCCCAGTCTAA
838 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
17512930 G-AT-CGGA---CA-----AG--T----T----T------GAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
17512969 CTCGAGCATGTACTGGTGTCGCATTTTTCTT-GAACGGGGCACCATCGTCGAAGCATCGTCAGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG-TCGGGGCACCATCGTCGGAGCATCGTCGGAG
* * ** *
17513033 AACCTAACCGGCGGCATTAGGGCCCCGGCGATC------G--GGGGGGTGTGCACACATGATGTG
130 AACCTGACCGACGGCATT-GGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
17513090 TC-ATGGGAGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
194 -CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * * * *
17513154 CACCCCCTTAAAGAGCATTCGATATTTTACAGGTTTTCTACCAGTAGCCGTTAAAGTGTCCGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
17513219 TGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
17513284 CTGCATGCCAAGAAAACTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * ** *
17513349 AATTTTCAAAAATCTCGAACCATAAAAAGTTTCAAAAATCGTAAAAAATAGAAAACGAGTCGTCT
453 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
17513414 TGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
17513479 ATTGGCACGTAGAAATATGAATATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
583 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
17513544 GCATCCCGTCTCTCTGGCCGGTGTAGT--------GCCCGCCCGCTCATTTCGTCGGTTGGCTTA
648 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * * * * *
17513601 GGCATACAGAGTTTATTCCCAATCTAAGATAGGACCGGACTGAGGGCTGGGGCAGCAAGATCGGC
713 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGTAGCAGGATCGGC
* * * * * *
17513666 AGCACGCAGAGGTGGACCCGGTTGATCCCCGGCTTGCGCATACCGCCCTTCTAGCCGACTGAGCG
778 AGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
*
17513731 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGAATACGAA
843 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC------T---AA
* *
17513796 GTTCATTCCCAGTCTAAGAATGCGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTG
1 G--------CA---T----A--CGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTG
* *
17513861 CGGCAGCACATGCTGGACTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCA---T
49 CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGT
* * * **
17513923 -----CATC-T--GAAAACCTGACTGACGACATTGGGATTCCGATGATCGGGGGGGCCGGGGGGG
114 CGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGG-TTCCGGCGATCGGGGGGGCC-GGGGGG
* * ** * *
17513980 TGTGCACCCATGATGTTTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTTTCCCTCCTC
177 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
*
17514045 AAACCTCGAGAACCCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
242 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * *
17514110 ATTAAAGTGTCTGAAATGGGGACACTTTTTTGAAATGGTCACAAAGTATTGTACACTTCGAGTTT
307 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * * * * *
17514175 TTACCTAAATTTTTTTTTGCATGCTAACAAAAATACAAGGATCACGTCTACAAATTTTGGGGCCA
372 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * * ** * *
17514240 AAACTCATTCCAAAAAAATTTTAAAAAATTCGGAACCGCAAAAAGTTTTGAAAATAGAGAAAAAT
437 AAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAAT
17514305 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
502 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * *
17514370 AAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACGCAACTACCACCCTA
567 AAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * * * *
17514435 TCGATCCACGGCTTGCGCATCCTGTCTCTCTAGCTGGTGTAGTGCCCGCCCACCCGTCCGCCCAC
632 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG----CCCGCCCGCCCGC
* ** * * *
17514500 TCATTTCGTCGGTTGGCTTAGGCATATAGAGTTCATTCCCAGTCTAAGATTGGACCAGATTGAGG
693 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGG
* * ** * * *
17514565 ATTACGGTAGCAAAAAT-AGCAGCATGCAGAGGGGGACCCGGTCGATCCCTGGCTTGCGCATCCC
758 GTTGCGGTAGC-AGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCC
* * * * *
17514629 GCCCCTTTGGCCGGCTGAGCACCCACACGCTCGTTTCATGGGTTGACTTAGGCATA-GAAGTTCA
822 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
17514693 TTCCCAGTCTAA
887 TTCCCAGTCTAA
* * * * * * * **
17514705 GCATATGGAGTTCGTTCCCAATCTAAGATCGGACCAGATCGAGGGTTGTGGCAGCACATGCTATG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * * * **
17514770 CTTGGGCATGTGCTGGTACCACATTTTTCTTCGTCAGGGCACCATCATAGGACCAACACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
*
17514835 ACCTGACCGACGGCATTGGAGTTCCGGCGATC--GGGGGCCGGGGGGTGTGCGCGCAGATGATGT
131 ACCTGACCGACGGCATTGG-GTTCCGGCGATCGGGGGGGCCGGGGGGTGT--GCGCACATGATGT
*
17514898 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATTCCTCATCAAACCTTC-AGAACTC
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCGAGAACTC
**
17514962 ACACCCCCTTAAATTGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG-A
*
17515027 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTT
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * *
17515092 TTATGCATGCCAACAAAAATACAAGGATCATGTCTACTAAGTTTGGGGCCAAAAATCCTTTC-AA
386 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * * *
17515156 AAAATTTTTGAAAAATCCCGAACAGCAAAAAGTTTCAAAAATCGTGAAAATTAAAAAACGAGTCG
451 AAAA-TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
17515221 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
17515286 GGCATTGGCACGTAAAAATATGTAGATGTGCCTAAACCCACCTACCTCCCTATCGATCCACGGCT
580 GGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * *
17515351 TGCACATCCCCTCTCTCTGGCTGGCATAGTCCCCGCCCG-CCGCCCGCTCGTTTCGTCGGTTGGC
645 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * * * *
17515415 GTAGGCATACAGAGTTCATTCCTAGTCTAAGATCAGACCGGA-TAGAGGGTTGTGGTAGCAAGAT
710 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACT-GAGGGTTGCGGTAGCAGGAT
* * *** *
17515479 CGGCAGCACGTAGAGGAGGACCCAACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGTTG
774 CGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * *
17515544 AGCGCCCGCACGTTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCACAGTCTAA
839 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * *
17515604 ACATA-GAAAGTTCATTCCCAGTTTAAGATCGAACCAGACCAAGGGTTGCGGTAGCACATGCTGG
1 GCATACG-GAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * * *
17515668 GCTCCGGCATGTGCTGGTACCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
* * *
17515733 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTG
130 AACCTGACCGACGGCATT-GGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * *
17515798 TGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
17515863 ACCCCTTTAAAGAGCATTTGAGGTTTTACAGGTTTGCTGCCAATAGCAATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
** *
17515928 GGGGACA-TTTTTTCAAATCCTCACAAAATTTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
17515992 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAACTCCTTCCAAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* *
17516057 ATTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
17516122 GCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAGAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
17516187 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCA
584 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* ** **
17516252 CATCCTGTCTCTCTGGCTAGCGTAGTGCCCGCCCGCCCGCCTTCTCGTTTCGTCGGTTGGCTTAG
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * * * * * *
17516317 GCATACAGAGTTCATTCCCAATCTAAGATAGGACTGGACTGCGGATTGGGGCACCAGGATCGGCA
714 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGTAGCAGGATCGGCA
* * *
17516382 GCACGCAGAGGTGGACCCGATCGATCCCCGGCTTGCGCATACCGCCCCTCTGGCCGGCTGAGCGC
779 GCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * *
17516447 CCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAA
844 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
17516502 GAATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * * * *
17516567 CTCGAGCATGTGCTGGTGCCATATTTTTCTTCGCCGGGGCACCATCATAGGAGCAACGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * *
17516632 ACCTGACCGGCGGCATTGCGGTTCCAGCGATCGAGGGGGCCGGGGGGTGCGTGCGCACATGATGT
131 ACCTGACCGACGGCATTG-GGTTCCGGCGATCGGGGGGGCCGGGGGGT--GTGCGCACATGATGT
* * *
17516697 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTCTCCCTCATCAAATCTTGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
17516762 CA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCTA-TAGCCATTAAAGTGTCTGAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC-AGTAGCCATTAAAGTGTCTGAA
*
17516825 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGGTGAATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
17516890 TGTGCATGCCAA-AAAAATAAAAGCATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * ** *
17516954 AAATTTTAAAAAAT-TCGAAACCACAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTCGT
452 AAATTTTAAAAAATCCCG-AACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* **
17517018 CTTGCCATGAAACTTCACATGAAGGCTTAAGTTACCATTGTATGAATTTACAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * * *
17517083 GTATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCTATCCATGGCTT
581 GCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * ** *** * * * *
17517148 GCGCATCTCGTCTCTCTAGCCAGTATAGTGCCCGCCCGCCCGTTTGCTCATTTTGTTGGTTGACT
646 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
*
17517213 TAGGCATAGGGAGTTCATTCCCAGT-T----T---A----A--GA----T-CGG-A-C-----C-
711 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGTAGCAGGATCG
* * *
17517251 G-A--ACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGGTTGAG
776 GCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * *
17517313 CACCCGCACGTTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-T-T--
841 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
17517367 -C-TA---AG---------A-TC--AGA-C----CGGACAGAGGGTTACGGTAGCACATGCCGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * **
17517410 CTTGGGCATGTGCTGGTGCCACATTTTTCTTCG-CTAGGGCACCATCGCCAGAGCATCACCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGTCGGAG
* * ** *
17517474 AACCTGACCGGCGGCATTAGGGTTCCAGAAATCGGGGGGGCCGGGGCGGGTGTGTGCACATGATG
130 AACCTGACCGACGGCATT-GGGTTCCGGCGATCGGGGGGGCC-GGG-GGGTGTGCGCACATGATG
* * **
17517539 TGCGATGGCTTCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAAATCGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
17517604 ACACCCCCTTGAAGAGCATTTTAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * *
17517669 ATGGGGACACTTTTTTCAGATGGTCACAAAATCTTGTACACTTCAAGTTTTTA-ATTATATTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-ATTTTT
* * * *
17517733 TTGTGCATGCCAATAAAAATACAAGGATCATGTCTACCAAGTTTGGGCCCAAAACTCCTTTCGAA
386 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * * **
17517798 AAAATTTTAGAAAATCCCGAACCGTAAAAAGTTTTAAAAATCAAGAAAAATAGAAAACGAGTCGT
451 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
*
17517863 CTTGCCATGATACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * ** *
17517928 GCATTGGCATGTAGAAATATGAAGATATG-CTGAAACCTGCCTACCACCCTATCGATCCACGACT
581 GCATTGGCACGTAGAAATATGAAGATGTGCCT-AAACCCACCTACCACCCTATCGATCCACGGCT
* * * **
17517992 TGCGCATCCCGTCTCTCTGGTCAGCGTAAT----GCCCGCCCGCCTACTCGTTTCGTCGGTTGGC
645 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * *
17518053 TTAGGCATACGGAGTTCATTCCCTGTCTAAGATCGAACTGGATTGAGGGTTGC
710 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGC
17518106 AGCAGCACAT
Statistics
Matches: 11336, Mismatches: 1385, Indels: 861
0.83 0.10 0.06
Matches are distributed among these distances:
816 190 0.02
819 1 0.00
823 1 0.00
824 118 0.01
825 7 0.00
826 13 0.00
827 7 0.00
828 1 0.00
829 15 0.00
830 92 0.01
831 2 0.00
833 4 0.00
834 2 0.00
835 3 0.00
836 1 0.00
837 154 0.01
838 8 0.00
839 8 0.00
840 15 0.00
841 59 0.01
842 21 0.00
843 202 0.02
844 134 0.01
845 253 0.02
846 4 0.00
847 13 0.00
848 5 0.00
849 12 0.00
850 22 0.00
851 10 0.00
852 11 0.00
853 9 0.00
854 7 0.00
855 22 0.00
856 560 0.05
857 388 0.03
858 10 0.00
859 6 0.00
860 4 0.00
861 1 0.00
862 7 0.00
863 104 0.01
864 24 0.00
865 2 0.00
866 3 0.00
867 45 0.00
868 59 0.01
869 453 0.04
870 114 0.01
871 6 0.00
872 28 0.00
873 10 0.00
874 4 0.00
875 5 0.00
877 370 0.03
878 7 0.00
879 4 0.00
880 9 0.00
881 549 0.05
882 2 0.00
883 56 0.00
884 3 0.00
885 5 0.00
887 3 0.00
888 72 0.01
889 44 0.00
890 30 0.00
891 30 0.00
892 259 0.02
893 296 0.03
894 11 0.00
895 120 0.01
896 3 0.00
897 328 0.03
898 860 0.08
899 1160 0.10
900 163 0.01
901 73 0.01
902 428 0.04
903 567 0.05
904 165 0.01
905 541 0.05
906 53 0.00
907 1100 0.10
908 5 0.00
909 73 0.01
910 5 0.00
911 165 0.01
912 1 0.00
913 12 0.00
914 2 0.00
915 3 0.00
916 18 0.00
917 47 0.00
918 159 0.01
919 272 0.02
920 4 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (898 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
ACCTGACCGACGGCATTGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGTAGCAGGATCGGCAGC
ACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:17509384 original size:26 final size:26
Alignment explanation
Indices: 17509355--17509404 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
17509345 GTTGACTTAG
* * *
17509355 GCATATGGAGTTTATTTCCAGTCTCA
1 GCATACGGAGTTCATTACCAGTCTCA
17509381 GCATACGGAGTTCATTACCAGTCT
1 GCATACGGAGTTCATTACCAGTCT
17509405 AAGATCGGAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.34
Consensus pattern (26 bp):
GCATACGGAGTTCATTACCAGTCTCA
Found at i:17512041 original size:26 final size:25
Alignment explanation
Indices: 17512012--17512063 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
17512002 GTTGACTTAG
* * *
17512012 GCATATGGAGTTTATTTCCAGTCTCA
1 GCATACGGAGTTCA-TTACAGTCTCA
17512038 GCATACGGAGTTCATTACAGTCTCA
1 GCATACGGAGTTCATTACAGTCTCA
17512063 G
1 G
17512064 ATCGGACTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 11 0.48
26 12 0.52
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.33
Consensus pattern (25 bp):
GCATACGGAGTTCATTACAGTCTCA
Found at i:17513799 original size:26 final size:26
Alignment explanation
Indices: 17513769--17513840 Score: 126
Period size: 26 Copynumber: 2.8 Consensus size: 26
17513759 AGGCATACAG
17513769 AGTTCATTCCCAGTCTAAGAATACGA
1 AGTTCATTCCCAGTCTAAGAATACGA
* *
17513795 AGTTCATTCCCAGTCTAAGAATGCGG
1 AGTTCATTCCCAGTCTAAGAATACGA
17513821 AGTTCATTCCCAGTCTAAGA
1 AGTTCATTCCCAGTCTAAGA
17513841 TCAGACCGGA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.28
Consensus pattern (26 bp):
AGTTCATTCCCAGTCTAAGAATACGA
Found at i:17514709 original size:25 final size:26
Alignment explanation
Indices: 17514680--17514731 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17514670 GTTGACTTAG
*
17514680 GCATA-GAAGTTCATTCCCAGTCTAA
1 GCATATGAAGTTCATTCCCAATCTAA
* *
17514705 GCATATGGAGTTCGTTCCCAATCTAA
1 GCATATGAAGTTCATTCCCAATCTAA
17514731 G
1 G
17514732 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 5 0.22
26 18 0.78
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATATGAAGTTCATTCCCAATCTAA
Found at i:17518706 original size:710 final size:712
Alignment explanation
Indices: 17517327--17518738 Score: 2129
Period size: 710 Copynumber: 2.0 Consensus size: 712
17517317 CGCACGTTCA
*
17517327 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCATTCTAAGATCAGACCGGACAGAGGGTT
1 TTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCATTCTAAGATCAGACCGGACAGAGGGTT
* * * * * * * *
17517392 ACGGTAGCACATGCCGGGCTTGGGCATGTGCTGGTGCCACATTTTTCTTCGCTAGGGCACCATCG
66 ACAGCAGCACATGCCGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCACCAGGGCACCAACA
17517457 CCAGAGCATCACCGGAGAACCTGACCGGCGGCATTAGGGTTCCAGAAATCGGGGGGGCCGGGGCG
131 CCAGAGCATCACCGGAGAACCTGACCGGCGGCATTAGGGTTCCAGAAATCGGGGGGGCCGGGGCG
* * *
17517522 GGTGTGTGCACATGATGTGCGATGGCTTCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
196 GGTGTGCGCACATGATGTGCGATGGCTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* * * *
17517587 TCAAAAATCGAGAACTCACACCCCCTTGAAGAGCATTTTAGATTTTACAGGTTTGCTGCCAGTAG
261 TCAAAAATCGAGAACTCACACCCACTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
*
17517652 CCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAGATGGTCACAAAATCTTGTACACTTCAAGT
326 CCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGT
* * * * * *
17517717 TTTTAATTATATTTTTTTGTGCATGCCAATAAAAATACAAGGATCATGTCTACCAAGTTTGGGCC
391 TTTTAATGATATCTTTTTGTGCATGCCAACAAAAATACAAGGATAACGTCTACAAAGTTTGGGCC
* * * *
17517782 CAAAACTCCTTTCGAAAAAATTTTAGAAAATCCCGAACCGTAAAAAGTTTTAAAAATCAAGAAAA
456 CAAAAATCCTTTCGAAAAAATTTAAAAAAATCCAGAACCGTAAAAAGTTTTAAAAATCAAGAAAA
*
17517847 ATAGAAAACGAGTCGTCTTGCCATGATACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
521 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * **
17517912 ACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATATGCTGAAACCTGCCTACCACCC
586 ACAAGCCATAAAAATGGAATTGGCATGCAGAAATATGAAGATATGCTGAAACCCACCTACCACCC
* *
17517977 TATCGATCCACGACTTGCGCATCCCGTCTCTCTGGTCAGCGTAATGCCCGCCCGCCTACTCG
651 TATCGATCCACGACTTGCGCATCCCGTCCCTCTGGCCAGCGTAATGCCCGCCCGCCTACTCG
* * **
17518039 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC-TGTCTAAGATC-GAACTGGATTGAGGG
1 TTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAT-TCTAAGATCAG-ACCGGACAGAGGG
* * * *
17518102 TTGCAGCAGCACATGCTGGGCTCGAGCATGTGCTGTTGCCACATTTTTCTTCACCAGGGGACCAA
64 TTACAGCAGCACATGCCGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCACCAGGGCACCAA
* *** * * * **
17518167 CACCGGAGCATCGTTGGAGAACTTGACCGGCGGCATTGGGGTTCCGGTGATCGGGGGGGCC-GGG
129 CACCAGAGCATCACCGGAGAACCTGACCGGCGGCATTAGGGTTCCAGAAATCGGGGGGGCCGGGG
*
17518231 -GGGTGTGCGCACATGATGTGCGATGGGTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCT
194 CGGGTGTGCGCACATGATGTGCGATGGCTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCT
**
17518295 CATCAAACCTCGAGAACTCACACCCACTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
259 CATCAAAAATCGAGAACTCACACCCACTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* **
17518360 GGCCATTAAAGTGTCTGCAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAA
324 AGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAA
17518425 GTTTTTAACTGA-ATCTTTTTGTGCATGCCAACAAAAATACAAGGATAACGTCTACAAAGTTTGG
389 GTTTTTAA-TGATATCTTTTTGTGCATGCCAACAAAAATACAAGGATAACGTCTACAAAGTTTGG
**
17518489 TG-CCAAAAATCCTTTCGAAAAAATTTAAAAAAATCCAGAACCGTAAAAAGTTTCT-AAAATCGT
453 -GCCCAAAAATCCTTTCGAAAAAATTTAAAAAAATCCAGAACCGTAAAAAGTTT-TAAAAATCAA
*
17518552 GCAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
516 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
*
17518617 AATTTACAAGCCATAAAAATGGAATTGGCATGCAGAAATATGAAGATGTGCCT-AAACCCACCTA
581 AATTTACAAGCCATAAAAATGGAATTGGCATGCAGAAATATGAAGATATG-CTGAAACCCACCTA
* * * *
17518681 CCACCCTATCGATCCATGGCTTGCGCATCCCGTCCCTCTGGCCGGCGTAGTGCCCGCC
645 CCACCCTATCGATCCACGACTTGCGCATCCCGTCCCTCTGGCCAGCGTAATGCCCGCC
17518739 TGCCCGTCCA
Statistics
Matches: 629, Mismatches: 65, Indels: 14
0.89 0.09 0.02
Matches are distributed among these distances:
710 459 0.73
711 11 0.02
712 159 0.25
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.26
Consensus pattern (712 bp):
TTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCATTCTAAGATCAGACCGGACAGAGGGTT
ACAGCAGCACATGCCGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCACCAGGGCACCAACA
CCAGAGCATCACCGGAGAACCTGACCGGCGGCATTAGGGTTCCAGAAATCGGGGGGGCCGGGGCG
GGTGTGCGCACATGATGTGCGATGGCTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCA
TCAAAAATCGAGAACTCACACCCACTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
CCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGT
TTTTAATGATATCTTTTTGTGCATGCCAACAAAAATACAAGGATAACGTCTACAAAGTTTGGGCC
CAAAAATCCTTTCGAAAAAATTTAAAAAAATCCAGAACCGTAAAAAGTTTTAAAAATCAAGAAAA
ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
ACAAGCCATAAAAATGGAATTGGCATGCAGAAATATGAAGATATGCTGAAACCCACCTACCACCC
TATCGATCCACGACTTGCGCATCCCGTCCCTCTGGCCAGCGTAATGCCCGCCCGCCTACTCG
Found at i:17520733 original size:26 final size:26
Alignment explanation
Indices: 17520697--17520749 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17520687 GTTGACTTAG
17520697 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17520723 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17520749 G
1 G
17520750 ATCAGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17522001 original size:904 final size:902
Alignment explanation
Indices: 17518934--17524153 Score: 7085
Period size: 904 Copynumber: 5.8 Consensus size: 902
17518924 GTTGACTTAG
* * * ** * **
17518934 GCATACGGAGTTCATTCGCAGTCTAAGATCAGACCGGACCAAGGTTTGTGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCCAAGATCGGACCGGACTGAGGGTTACGACAGCACATGCTGGG
* * * * * *
17518999 CTCGGGCATGTGCTGGTGACA-CATTGTTCTTCGCCGGGGTACCATCACTGTAGCATCACCGGAG
66 CTCGGGCATGTGCTGGTG-CAGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAG
* * ** * * *
17519063 AACCTGACTGACGGCATTAGCGTTCCGGTGATCGGGGGGCCGAAGGGGTGTGCGTACATGATGTG
130 AACCTGACTGACGGCATTGGGGTTCCGACGATCGGGGGGCCGAGGGGGAGTGCGCACATGATGTG
* *
17519128 CGATGGGTGCCAGTCCTTGGAGCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
195 CGATGGGTGCCGGTACTTGGAGCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
* * *
17519193 ACCACCTTAAAGAGCATTTGACATTTTACAGGTTTGCTGCCAGTAGCCTTTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
17519258 GGGGACACTTTTTTTAAATGCTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGACTGTTTTCA
325 GGGGACACTTTTTTCAAATGCTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATGTTTTCA
*
17519323 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CAAAACTCCTTCCGAAAAA
390 TGAATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * *
17519387 ATTTTAAAAAATCTCGAACCATAAAAAGTTTTGAAAGTCTTTAAAAATAGAACACGAGTCGTCTT
455 ATTTTAAAAAATCCCGAACCAT-AAAAGTTTTGAAAATCTTGAAAAATAGAAAACGAGTCGTCTT
* *
17519452 GCAATGAAACTTCACGTGAAGCCTTAAGGGACCATTGTATGAATTT---A--C-------A--AA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGAA
* * *
17519503 TTGGCATGCAGAAATAGGAAGATGTGCCTAAACCCACCTACCTCCCTATCGATCCACGGCTTGCG
584 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
17519568 CATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCCGCCCGCCCACCCACTCGTTTTGTCGGTTGGC
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGTCCGCCCGCCCACCCACTCGTTTCGTCGGTTGGC
* * * * * *
17519633 TTAGGCGTACGGAGTTCATTCCCAGTCTAAGACCAGACCGGATCAAGGGTTATGATAGTAGGATC
714 TTAGGCGTACGGAGTTCATTCCCAGTCTAAGACCGGACCAGACCTAGGGTTACGATAGCAGGATC
* *
17519698 GGCAGCACACAGAGAGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCTTCTGGCTGGCTAA
779 GGCAGCACACAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCTTCTGGCTGGCTGA
* * *
17519763 GCGCCTGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
844 GCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
17519822 GCCTAC-GAGTTCATTCCCAGTCTC-AGATCGGACCAGACTGAGGGTTACGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTC-CAAGATCGGACCGGACTGAGGGTTACGACAGCACATGCTGG
* * ** *
17519885 GCTCGGGCATGTGCTGGTGCAGCTTTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCAGAG
65 GCTCGGGCATGTGCTGGTGCAGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAG
* * * * *
17519950 AAACTGCCAGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGGAGTGCGCACATGAT
130 AACCTGACTGACGGCATTGGGGTTCCGACGATC-GGGGGGCC-GAGGG-GGAGTGCGCACATGAT
*
17520015 GTGCGATGGGTGCCGATACTTGGAGCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
192 GTGCGATGGGTGCCGGTACTTGGAGCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
*
17520080 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGA
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
17520145 AATGGGGGCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATGTTT
322 AATGGGGACACTTTTTTCAAATGCTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATGTTT
* * * * * * *
17520210 TCATGGATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGCGCCAAAAATCATTTCGAA
387 TCATGAATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * *
17520275 AAAATTTTTAAAAATCCCGAACCGTAAAAAGTTTCT-AAAATCGTGAAAAATAGAAAACGAGTCG
452 AAAATTTTAAAAAATCCCGAACCAT-AAAAGTTT-TGAAAATCTTGAAAAATAGAAAACGAGTCG
* *
17520339 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAAT
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAA
* * * *
17520404 GTAATTGGCACCCAAAAATATGAAGATGTGCCTAAACCCACATACCACCCTATCGATCCACGGCT
580 GGAATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
17520469 TGCGCATCCTGTCTCTCTGGCCGACGTAGTG-CCG-CCTGTCCGCCCGCCCACTCGTTTCGTCGG
645 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGTCC-GCCCGCCCACCCACTCGTTTCGTCGG
* * * *
17520532 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA-CTA--GTTGCGGTAGCA
709 TTGGCTTAGGCGTACGGAGTTCATTCCCAGTCTAAGACCGGACCAGACCTAGGGTTACGATAGCA
* * * * * * * * *
17520594 GGATCGGCAGCACGCAGAGGGGGACCC-AGTCGATCCCCGGCTTCCACATCTCACCCCTCTTGCT
774 GGATCGGCAGCACACAGAGGGGGACCCGA-CCGATCCCTGGCTTGCGCATCCCGCCCTTCTGGCT
* *
17520658 GGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
838 GGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * *
17520723 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGTTTGCAACAGCACATGATGGG
1 GCATACGGAGTTCATTCCCAGTCCAAGATCGGACCGGACTGAGGGTTACGACAGCACATGCTGGG
* * * *
17520788 CTCGGGCATGTGGTGGTGACA-CATTTTTCTTCGTCGGGGAACCATCACCGGAGCATCACCAGAG
66 CTCGGGCATGTGCTGGTG-CAGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAG
* * * *
17520852 AACCTGACTGACAGCATTGGGGTTCCGGCGATCGGGGGGCCGAGGGGGTGTGCGCACTTGATGTG
130 AACCTGACTGACGGCATTGGGGTTCCGACGATCGGGGGGCCGAGGGGGAGTGCGCACATGATGTG
*
17520917 CGATGGGTGCCGGTACTTGGAGCTTATATTGGCCCCCTATCCCTAATCAAACCTTGAGAACTCAC
195 CGATGGGTGCCGGTACTTGGAGCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
* *
17520982 A-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTAAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
17521046 GGGGACACTTTTTTCAAATGCTCACAGAATCTTGTAAACTTTGAGTTTTTAGCTAAATGTTTTCG
325 GGGGACACTTTTTTCAAATGCTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATGTTTTCA
*
17521111 TGAATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCCGAAAAA
390 TGAATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* *
17521176 ATTTTAAAAAATCCCGAACCATAAAATTTTTGAACATCTTGAAAAATAGAAAACGAGTCGTCTTG
455 ATTTTAAAAAATCCCGAACCATAAAAGTTTTGAAAATCTTGAAAAATAGAAAACGAGTCGTCTTG
17521241 CCATGAAACTTCACGTGAAGGCTTAAGGGTA-CATTGTATGAATTTACAAGCCATAAAAAAGGAA
520 CCATGAAACTTCACGTGAAGGCTTAAGGG-ACCATTGTATGAATTTACAAGCCATAAAAAAGGAA
* *
17521305 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACG
584 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
17521370 CATCCCATCTCTCTGGCCGGCGTAGTGCCCGTCCGCCCGCCCAACCACTCGTTTTGTCAGTTGGC
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGTCCGCCCGCCCACCCACTCGTTTCGTCGGTTGGC
* * * *
17521435 TTAGGCGTACGGGGTTCAATCCCAGTCTAAGACCGAATCAGACCTAGGGTTACGATAGCAGGATC
714 TTAGGCGTACGGAGTTCATTCCCAGTCTAAGACCGGACCAGACCTAGGGTTACGATAGCAGGATC
* * * **
17521500 GACAGCACAAAGAGGGGGACCCGGCCGATCTATGGCTTGCGCATCCCGCCCTTCTGGCTGGCTGA
779 GGCAGCACACAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCTTCTGGCTGGCTGA
*
17521565 GTGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
844 GCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
17521624 GCATACGAAGTTCATTCTCAGTCCAAGATCGGACCGGACTGAGGGTTACGATAGCACAAGCTGGG
1 GCATACGGAGTTCATTCCCAGTCCAAGATCGGACCGGACTGAGGGTTACGACAGCACATGCTGGG
*
17521689 CTCGGGCATGTGCTGGTGCAGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCATCGGAGA
66 CTCGGGCATGTGCTGGTGCAGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGA
* * * * *
17521754 ACCTGACTGGCGGCATTGGGGTTCCGATGATCGGGGGGGTCAGGGGGCGGAGTGCACACATGATG
131 ACCTGACTGACGGCATTGGGGTTCCGACGATC-GGGGGG-CCGAGGG-GGAGTGCGCACATGATG
* ** *
17521819 TGCAATGGGTGCCGGTACTCAGAGCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTA
193 TGCGATGGGTGCCGGTACTTGGAGCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
* * * *
17521884 ACA-CCCCTTAAAGTGCATTTGAGAATTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTTAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
17521948 ATGGGGACACTTTTTTCAAATGCTCACAAAATCTTGTAAACTTCGAGTTTTTAGCTGAATGTTTT
323 ATGGGGACACTTTTTTCAAATGCTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATGTTTT
* *
17522013 CGTGAATGCCAAAAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
388 CATGAATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * * *
17522078 AAATTTTAAAAAATCTCGAACCATAAAATTTTTGAACATCTTGAAAAATAAAAAATGAGTCGTCT
453 AAATTTTAAAAAATCCCGAACCATAAAAGTTTTGAAAATCTTGAAAAATAGAAAACGAGTCGTCT
* *
17522143 TGCCATGAAACTTCACGTGAATGCTTAAGGGTCCATTGTATGAATTTACAAGCCATAAAAAAGGA
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGA
*
17522208 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
583 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
** * * *
17522273 GCATCCTTTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCAACCACTCGTTTTGTCGGTTGG
648 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGTCCGCCCGCCCACCCACTCGTTTCGTCGGTTGG
* * * *
17522338 CTTAAGCGTACGGAGTTCATTCCCAGTCTAAGACCGGACCGGACCGAGGGTTACGATAGCAAGAT
713 CTTAGGCGTACGGAGTTCATTCCCAGTCTAAGACCGGACCAGACCTAGGGTTACGATAGCAGGAT
* *
17522403 CGGCAGCACAAAGAGGGGGACCCGACCGATCCTTGGCTTGCGCATCCCGCCCTTCTGGCTGGCTG
778 CGGCAGCACACAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCTTCTGGCTGGCTG
* *
17522468 AGCGCCTGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
843 AGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
17522528 GCATACGGAGTTCATTCTCAGTCCAAGATCGGACTGGACTGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCCAAGATCGGACCGGACTGAGGGTTACGACAGCACATGCTGGG
* * *
17522593 CTCGGGCATGTGTTGGTGCAGCATTTTTCTTCGTTGGGGCACCATCGCCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCAGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGA
*
17522658 ACCTGACT-AGCGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGCGGGGGCGGAGTGCGCACA
131 ACCTGACTGA-CGGCATTGGGGTTCCGACGATC-GGGGGGC-----CGAGGG-GGAGTGCGCACA
* ** * *
17522722 TGATGTGCAATGGGTGCCGGTACTCAGACCTTATATTGGCCCCCTATCCCTCATCAAACCTTCAG
188 TGATGTGCGATGGGTGCCGGTACTTGGAGCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAG
*
17522787 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTCGCTGCCAGTAGCCATTAAAGTGT
253 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * * *
17522852 CCGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGATTTTTTAGCAGAAT
318 CTGAAATGGGGACACTTTTTTCAAATGCTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAAT
** ** ** *
17522917 -TTTTTTTCCATGCCAACGAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTC
383 GTTTTCATGAATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * *
17522981 CGAAAAAATTTTAAAAAATCCCGAACTATAAAAGGTTTTAAAAATCATGAAAAATAGAAAACGAG
448 CGAAAAAATTTTAAAAAATCCCGAACCATAAAA-GTTTTGAAAATCTTGAAAAATAGAAAACGAG
17523046 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AA
512 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * * * * *
17523110 AATGGCATTGGAATGCAG-AATATGAAGACGTGCCTAAACCCACCTACCATCCTATCGATCCACG
577 AAAGGAATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * * *
17523174 GCATGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCATTCGCCCGCCCGCCCGCTCGTTTCGTC
642 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGTCCGCCCGCCCACCCACTCGTTTCGTC
* * * * *
17523239 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCA-AACTGAGGGTTGCGGTA
707 GGTTGGCTTAGGCGTACGGAGTTCATTCCCAGTCTAAGACCGGACCAGACCT-AGGGTTACGATA
* * * ** * * * *
17523303 GCAAGATTGACAGCATGCTGAGGGGGACACGATCC-ATCCCTGGCTTGCGCATCCCACCCCTCTG
771 GCAGGATCGGCAGCACACAGAGGGGGACCCGA-CCGATCCCTGGCTTGCGCATCCCGCCCTTCTG
* *
17523367 GCCGACTGAGCGCC-GCACGCTCGTTTCGTGGGTTG----A--C---C-----T-A-----AG-C
835 GCTGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
17523410 ---
900 TAA
* * * **
17523410 G--TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCCAAGATCGGACCGGACTGAGGGTTACGACAGCACATGCTGGG
* * * * * *
17523473 CTCGAGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCAGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGA
* * * * * *
17523538 ACTTGACCGACGGCATTGGGGTTCCGACGATCGGGGGCCCAAAGGGGGTGTGCGCACAAGATGTG
131 ACCTGACTGACGGCATTGGGGTTCCGACGATCGGGGGGCC-GAGGGGGAGTGCGCACATGATGTG
* * * ** * * *
17523603 TGATGGGTGCTGGTATTTGGCCCTTATATTGGACCCCTATCCCTCATCAAACCTCGAGAACTCGC
195 CGATGGGTGCCGGTACTTGGAGCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
17523668 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
17523733 GGGGACACTTTTTTCAAATGTTCACGAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTA
325 GGGGACACTTTTTTCAAATGCTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATGTTTTCA
* * * **
17523798 TGAATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACCCCTTTTGAAAAA
390 TGAATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
** ** * *
17523863 ATTTTAAAAAATCTTGAACCGCA-AAAAGTTTCAAAAATCATGAAATATAGAAAACGAGTCGTCT
455 ATTTTAAAAAATCCCGAA-C-CATAAAAGTTTTGAAAATCTTGAAAAATAGAAAACGAGTCGTCT
* *
17523927 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACATGCCATAAAAAAGGA
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGA
* * * *
17523992 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCATGACTTGC
583 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
17524057 GCATCCCGTCTCTCTTGG-CGGCATAGTGCCCGTCTGCCCGCCCACCCACTCGTTTCGTCGGTTG
648 GCATCCCGTCTCTC-TGGCCGGCGTAGTGCCCGTCCGCCCGCCCACCCACTCGTTTCGTCGGTTG
17524121 GCTTAGGCGTACGGAGTTCATTCCCAGTCTAAG
712 GCTTAGGCGTACGGAGTTCATTCCCAGTCTAAG
17524154 CATATGAAGT
Statistics
Matches: 3865, Mismatches: 410, Indels: 125
0.88 0.09 0.03
Matches are distributed among these distances:
874 189 0.05
875 170 0.04
876 20 0.01
877 133 0.03
878 3 0.00
879 6 0.00
880 142 0.04
881 1 0.00
882 1 0.00
885 1 0.00
886 4 0.00
887 122 0.03
888 13 0.00
889 3 0.00
890 241 0.06
891 117 0.03
892 2 0.00
894 1 0.00
896 2 0.00
897 183 0.05
898 262 0.07
899 86 0.02
900 8 0.00
901 391 0.10
902 137 0.04
903 12 0.00
904 906 0.23
905 85 0.02
906 22 0.01
907 214 0.06
908 193 0.05
909 195 0.05
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (902 bp):
GCATACGGAGTTCATTCCCAGTCCAAGATCGGACCGGACTGAGGGTTACGACAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCAGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGA
ACCTGACTGACGGCATTGGGGTTCCGACGATCGGGGGGCCGAGGGGGAGTGCGCACATGATGTGC
GATGGGTGCCGGTACTTGGAGCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGCTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATGTTTTCAT
GAATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCCCGAACCATAAAAGTTTTGAAAATCTTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGAATT
GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGGCGTAGTGCCCGTCCGCCCGCCCACCCACTCGTTTCGTCGGTTGGCTT
AGGCGTACGGAGTTCATTCCCAGTCTAAGACCGGACCAGACCTAGGGTTACGATAGCAGGATCGG
CAGCACACAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCTTCTGGCTGGCTGAGC
GCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:17525058 original size:26 final size:26
Alignment explanation
Indices: 17525029--17525081 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17525019 GTTGAGTTAG
*
17525029 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
* *
17525055 GCATATGGAGTTCATTGCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
17525081 G
1 G
17525082 TTTGGATCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:17528790 original size:868 final size:872
Alignment explanation
Indices: 17524161--17533365 Score: 10575
Period size: 899 Copynumber: 10.4 Consensus size: 872
17524151 AAGCATATGA
* * ** * * *
17524161 AGTTCATTGCCAGTCTAAG-AT--TGGACCAGACCGAGGGTTATGGCAGCACATGCTAGGCTCGG
1 AGTTCATTCCCAGTCTAAGCATACAGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGA
* *
17524223 GCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCATCGGAGCATCGTCGGAGAACCTG
66 GCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTG
** * *** ** *
17524288 ACTTGCGGCATTGGGGTTTCGGCGATCGGGGGGGTTGGGGGGTGTGTACACACGATGTGCGATGG
131 ACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGG
* * *
17524353 GTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTTGAGAACTTACACCCCC
196 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * *
17524418 TTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGGAATGGGGAT
261 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* *
17524483 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATT
326 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
*
17524548 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTA
391 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
* * * * *
17524613 AAATATCTCGAACTGAAAAAAGTTT-AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
456 AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
17524677 AAACTTCACTTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
521 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * *
17524742 CACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGCATCTC
586 CACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
*
17524807 GTCTCTCTGGCCAGCGTAGTGCCCCCCCGTCAGCCCGCCCGCTCGTTTCGTCGGTTGG-TTGAGG
651 GTCTCTCTGGCCGGCGTAGTG-----CC--C-GCCCGCCCGCTCGTTTCGTCGGTTGGCTT-AGG
* ** * * * *
17524871 CATACGGAGTTCATTCCTAGTCTAAGATTGGACCAGACTGAGGGTTGAGGTAGCAGGATCGGCAG
707 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAAGGTTGCGGTAGCAGGATCGACAG
* * * * * * * *
17524936 CACGCAGAGGTGAACCCGACCGAT-CCTCGACTTGCACGTCCCACCCCTCTGGCAGGCTGAGCGC
772 CACGCAGAGGGGGA-CCGACCGATCCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGC
* *
17525000 CCGTACGCTCGTTTCGTGGGTTGAGTTAGGCATACGG
836 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
*
17525037 AGTTCATTCCCAGTCTAAGCATATGGAGTTCATTGCCAGCCTAAGTTTGGATCGAACTGAGGGTT
1 AGTTCATTCCCAGTCTAAGC--AT--A---CA--G-GA-CC--A-----GA-C---C-GAGGGTT
* * *
17525102 GTGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTCTTCTTCATCGGGGCACCATCG
43 GCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCG
* * * *
17525167 TCGGAGCATCGCCGGTGAACCTGACCGGCGGCATTGGTGTT-TGGCGATCGGGGCGGCCGGGGGG
108 TCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGG-GGCCGGGGGG
* *
17525231 GTGTCCGCACATGATGTGCGATGGGTGC-GAGAACTTGGCCCTTATATTGGCCCCCTATCCCTCA
172 GTGTGCGCACATGATGTGCGATGGGTGCTG-GTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* *
17525295 TCAAACCTCGAGAACTCACAACCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAG
236 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
*
17525360 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGT
301 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* *
17525425 TTTTGGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGAC
366 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * *
17525490 CAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAA
431 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAA
* * *
17525555 ATAGAAAACGAGTCATCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTACGAATTT
496 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
*
17525620 ACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
561 ACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* ** * *
17525685 TATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGATGTAGT----GCCCGTCCGCTCCTTT
626 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTT
* * * * * * *
17525746 CGTCAGTTGGCTTAGGCATATGAAGTTCATTCCCAGTCTAAGATCAAACCGGACTTAGGGTTGCA
691 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAAGGTTGCG
* * * **
17525811 GCAACAGGATCGGCAGCACGTGGAGGGGGACCCGACCGATCCC-CGGCTTGCGCATCCCGCCCCT
756 GTAGCAGGATCGACAGCACGCAGAGGGGGA-CCGACCGATCCCTCGGCTTGCGCATCCCGCCCCT
* * * * * *
17525875 CTGGCCGATTGAGCACCCGTACGCTCGTTTTGTAGGTTGACTTAGGCATACGA
820 CTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* * * * *
17525928 AGTTCATTCCCAGTCTAAG-AT-C-GGACCGGACAGAGCGTTGCGATAGCACATGCTGGGCTCCA
1 AGTTCATTCCCAGTCTAAGCATACAGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGA
* * ** * * ** *
17525990 GTATGTGCTGCTGCCATATTTTTCTTAATCGGGGCACCGTCACCGGAGCATCGTCGAAGAACCTG
66 GCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTG
* * *
17526055 ACCGACGGCATTGGGGTTCCGGTGATCGGAGGGGCCGGGGGGGTGTGCACACATGATGTGC-AGT
131 ACCGGCGGCATTGGGGTTCCGGCGATCGG-GGGGCCGGGGGGGTGTGCGCACATGATGTGCGA-T
* * *
17526119 GCGTGCTAGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
194 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
17526184 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
259 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * *
17526249 ACACTTTTTTCAAATGGTCATAAAATCTTGTACACTTCGAGTTTTTAGATGAATTTTTTTATGCA
324 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
** *
17526314 TGCCAACAAAAATACAAGGATCACGGGTA-CAACGTTTGGGGCCAAAACTTCTTCCGAAAAAATT
389 TGCCAACAAAAATACAAGGATCACGTCTACCAA-GTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * * * *
17526378 TTAAAAAATCCCAAATCGTAAAAAGTATCAAAAATCGTGAAAAATAGAAAACGAGTAGTCTTGCC
453 TTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
17526443 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
518 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* ** *
17526508 CCATGCAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCAT
583 GCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * ** *
17526573 CTCGTCTCTCTGGCCGACGTAGTGCCCATCCGCCCGCTCGTTTCGTCGGTTGGCGTAGGCATACG
648 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * ** * * * *
17526638 GAGTTCATTCCTAGTCTAACATCAGA-ATGAATGGAGGGTTGCGGCAGCAGGATCGACAGCACCC
713 GAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAAGGTTGCGGTAGCAGGATCGACAGCACGC
** * *
17526702 AGAGGGGGACCCGACCGAT-CCTCGGCTTGCGCATCCAACCCTTCTGGCCGGCTGAGCGCCCGCA
777 AGAGGGGGA-CCGACCGATCCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCA
* *
17526766 CGCTCGTTTCGAGGGTTGACTTAAGCATACGG
841 CGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* * ** ** * * *
17526798 AGTTCATTCCCAATCTAAGCATACAAAGTTCATTCTC-AGTGTAG-GATCAG-AC---C-GGAC-
1 AGTTCATTCCCAGTCTAAGCATAC-AGGACCAGAC-CGAGGGTTGCGA-CAGCACATGCTGGGCT
** * *
17526855 CGAG---G-G-TTTTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATTGTTGGAGAAC
63 CGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAAC
* * * * * * *
17526915 CTAACCGACGGCATTGTGGTTCCGACGATC-AGGGGCCCGAGGGGTGTGCGCACATGATGTGCGA
128 CTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGA
* *
17526979 TGGGTGCTGGTACTTGGCCCTTATAATGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACC
193 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * * *
17527044 CCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCTGTAGCTATTAATGTGTCTGAAATGGG
258 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * * *
17527109 GACACTTTTTTCAAATGGTAACAAAATCTTATACACTTCGTGTTTTTAGCTGAATTTTTTTATGC
323 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* *
17527174 ATGCCAACAAAAAAACAAGGATCACGTCTACCAAGTTTGGGGCTAAAAC-CCTTCCGAAAAAATT
388 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * * * *
17527238 TTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACAAGTCGTCTTGCC
453 TTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
* * * * *
17527303 ATGAAACTTCACATGAAGGCTTAAGGGAGCATTGTATGAATTTACAAGCCATAAAAAAGGAATCG
518 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
*** *
17527368 GCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCAT
583 GCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * ** *
17527433 CCTGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCCCACTCGCTTGTTTTATCAGTTGGCTTA
648 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG----CT--C--GTTTCGTCGGTTGGCTTA
** * ** * * *
17527498 GGTGTACGGAGTTCA-TCCCTATTCTAAGATTGGACCGGAC-CAAGGGTTACAGTAGCAGGATC-
705 GGCATACGGAGTTCATTCCC-AGTCTAAGATCAGACCGGACTGAA-GGTTGCGGTAGCAGGATCG
* ** * * *
17527560 AGCAGCACACAGAGGGGGACCTGGTCGATCCCT-GGCTTGCGCATCCCGCCCTTCTAGCCGGCTG
768 A-CAGCACGCAGAGGGGGACC-GACCGATCCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGACTG
* * *
17527624 AGCGCCTGCACGCTTGTTTCGTGCGTTGACTTAGGCATACGG
831 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* * ** *
17527666 AGTTCATTCCCAGCCTAAGCATA-TGG---AGTTC-A---TTGC--CAGCACATGCTGGGCTCGG
1 AGTTCATTCCCAGTCTAAGCATACAGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGA
* * * *
17527721 GCATGTGTTGGTGCTGCATTTTTCTTCTTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTG
66 GCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTG
* * ** * * * *
17527786 ACCGACAGCATTAAGGTTTCGGTGATCGGGGGGCCGAGGGGGTGTGTGCACATGATGTGCGATGG
131 ACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGG
* *
17527851 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAACAAACCTCGAGAACTCACACCCTC
196 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* *
17527916 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGGAATGGGGAC
261 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * *
17527981 ACTCTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATTATTTTGTGCATG
326 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * *
17528046 CCAACAAAAATACAAAGATCACGTCTACCAAATTTGGGGCCAAAACTCCTTTCGAAAAAATTTTA
391 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
* * * ** * *
17528111 AAAAATCCCCAACCGTAGAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTAGTCTTGCCATG
456 AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* * *
17528176 AAACTTCACGTGAAGGCTTAAGGGATCATTGTATGAATTTACAAGCTAGAAAAATGGCATTGGCA
521 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * *
17528241 CACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGTTTGCACATCCC
586 CACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * *
17528306 GTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACAGAG
651 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * * *
17528371 TTCATTCCCAGTCTAAGATCGGACCGAACTGAACGTTGCGGCAGGAGGATCGACAGCACGCAGAG
716 TTCATTCCCAGTCTAAGATCAGACCGGACTGAAGGTTGCGGTAGCAGGATCGACAGCACGCAGAG
* * *
17528436 GGGGACTCGACCGA-CCCTCGGCTTGCCCATCCC-CCCCTCTGGCCGACTGAGCGCTCGCACGAT
781 GGGGAC-CGACCGATCCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCT
* * *
17528499 CATTTTGTGGGTTGACCTAGGCATACGG
845 CGTTTCGTGGGTTGACTTAGGCATACGG
*
17528527 AGTTCATTCCTAGTCTAAG-AT-C-GGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGA
1 AGTTCATTCCCAGTCTAAGCATACAGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGA
*
17528589 GCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTG
66 GCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTG
* * * * *
17528654 ACCGGCGGTATTAGGGTTCCGACGATCGGGGGCCCGAGGGGGTGTGCGCACATGATGTGCGATGG
131 ACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGG
* *
17528719 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTTGAGAACTCACACCCCC
196 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * *
17528784 TTAAAGAGCATTTGACATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTAAAATGGGGAC
261 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * *
17528849 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTATGAATG
326 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
*
17528914 CCAACAAAAATACAAGGATCACGTCCACCAAGTTTGGGGCCAAAAC-CCTTCCGAAAAAATTTTA
391 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
* * * * * * *
17528978 AAAAATCCCGAACCCCAAAAAGGTTCGAAAATCATGAAAAATAGAGAACGAGTTGTCTTGCCCTG
456 AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* * * * *
17529043 AAACTTCACGTGCAGGCTTAAGGGACCATTGTTTGAATTTACAAACCATAAAAAAGGAATTGGCA
521 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
** * * * * * *
17529108 TGCAGAAATATGAAGATGTGCCGAAACCCACCTAGCACCCTATTGATCCATGGCTTGTGCATCCT
586 CACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * *
17529173 GTCTCTCTGGTCGGTGTAGTGCCCGCCCGCCCGCCCACCCACTCATTTCGTCGGTTGGCTTAGGC
651 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG--------CTCGTTTCGTCGGTTGGCTTAGGC
* * * * * *
17529238 GTACGGAGTTCATTCCCATTCTAAGATCAGACCGGAC-CAAGGGTTACGGTAGTAGGATCAACAG
708 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAA-GGTTGCGGTAGCAGGATCGACAG
* ** * * * * * *
17529302 CACTCAGAAAGGGACTTGACCGAT-CCTCGGCTTACGCATCCTGCCCTTCTGGCCGGCTGAGAGC
772 CACGCAGAGGGGGAC-CGACCGATCCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGC
* *
17529366 CTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGG
836 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
*
17529403 AGTTCATTCCCAGTTTAAGCATACAGAGTTCATTGCCAGTCTAAGATTGGATCGGACTGAGGGTT
1 AGTTCATTCCCAGTCTAAGCATACAG-G---A----C---C----A---GA-C---C-GAGGGTT
*
17529468 GCGACAGCACATGCTGGGCTCG-GCCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
43 GCGACAGCACATGCTGGGCTCGAG-CATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATC
** * * * * *
17529532 ACCGGAGCATCGTCGGAGAACCTAACCGACGGTATTGGGGTTACGGTGATCGGGGGGCCGGGGGG
107 GTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGG
* * * *
17529597 GTGTGCACACATGATGTACGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAC
172 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* *
17529662 CAAACCTCGAGAACTCACACCTCCTTCAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
237 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
*
17529727 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTT
302 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * * * ** * *
17529792 TTTA-CTTGAATTGTTTTGTGCTTTCCAACAAAAATACAAGGATCATGTCTAAGAAACTTTGGGA
367 TTTAGC-TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT-ACCAAGTTTGGGG
* * * * * * *
17529856 CCCAAACTCCATCCGAAAAAATTTGAAAAAATCTCAAACCGCGAAAAGTTTCAAAAATTGTGAAA
430 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAA
* *
17529921 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGATTAAGGGACCATTCTATGAATT
495 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* * *
17529986 TACAAGCCATAAAAATCGCATTGGCACATAGAAATATAAAGATGTGCCTAAACCCACCTACCACC
560 TACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * * *
17530051 CTATTGATCCACGGCTTGCACATCCCGTCTCTCTTGCCGGCGTAGTGCCCGCCCACCCGTTCGTT
625 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTT
* * * * * *
17530116 TCATCGGTTAGCTTAGGCATACGGACTTCATTCCCAGTCTAAGATTAGACTGGAC-CAAGGGTTG
690 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAA-GGTTG
** * * *
17530180 TAGTAGCAGGATC-AGCAGCACGTAAAGGGGGACCTGGCCGATCCC-CGGCTTGCGCATCCCGCC
754 CGGTAGCAGGATCGA-CAGCACGCAGAGGGGGACC-GACCGATCCCTCGGCTTGCGCATCCCGCC
* * * *
17530243 CCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACAG
817 CCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
*
17530299 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTT
1 AGTTCATTCCCAGTCTAAG----C--A--T-A----CAG-----GA-C---C-AGACCGAGGGTT
* ** *
17530364 GC-AGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCATC
43 GCGA-CAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATC
* ** * *
17530428 GCCGGAGCATCCCCAGAGAACCTGACCGGCGGCATTGGGGTTCCAGCGATCGGGGGGCCCGGGGG
107 GTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGG-CCGGGGG
* *
17530493 GGTGTGCGCACATGATGTGTGATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCA
171 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* * * * *
17530558 TCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTCAGATTTTACAGGATTGCTACCGGTAG
236 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
** *
17530623 GAATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT-TAACACTTCGAG
301 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT-ACACTTCGAG
* * * *
17530687 TTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATTACATCTACCAAGTTTAGGG
365 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * ** * *
17530752 CCAAAACTCCTACCGAAAAAATTTTTAAAAATCCAAAACCGCAAAAGGTTTCAAAAATCATGAAA
430 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAA
* *
17530817 AATAGAAACCGAGTCGTCTTGCCATGAAACTTCACGTGAAGACTTAAGGGACCATTGTATGAATT
495 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
*
17530882 TACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCTACCTACCACC
560 TACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* ** *
17530947 CTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCAACTTAGTGCCCGCCCGCCCGCTTGCT
625 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CC-C--GCT
* * * * * * *
17531012 CGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCTAGTCTAAGATCGGATCGGGCTGAGGG
686 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAAGG
* * * ** *
17531077 TTGTGGTAGCAAGATC-AGCAACACATAGAGGTGGACCCGACCGATCCC-CGGCTTGCGCATCCC
751 TTGCGGTAGCAGGATCGA-CAGCACGCAGAGGGGGA-CCGACCGATCCCTCGGCTTGCGCATCCC
* * *
17531140 GCCCCTCTGGCC-AGCTGAACGCCAGC-CGCTCGTTTTGTGGGTTGACTTAGGCATACGG
814 GCCCCTCTGGCCGA-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* *
17531198 AGTTCATTCCCAGTCTAAGCGTACGGAGTTCATTCCCCATCTAAGATCAGACCGGATCGAGGGTT
1 AGTTCATTCCCAG--T---C-TA---AG--CA-T----A-C--AG----GACCAGACCGAGGGTT
* * * * * *
17531263 GCGGCAGCACATGCTAGGCTAGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCATCATCG
43 GCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCG
* *
17531328 TCGGAGCATCGTTGGAGAACCTGACCGGCGGCATTGGGGTTCCAGCGATCGGGGAGGCCGAGGGG
108 TCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGG-GGCCG-GGGG
** * *
17531393 GGTGTGCGCACATGATGTGCGATTTGTGCTGGTAATTGGCCCTTATATTGGCCCCCTATACCTCA
171 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* *
17531458 TCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAG
236 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* * *
17531523 CTATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTCAAGT
301 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
17531588 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
366 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * * * * *
17531653 CAAAACTCC-TCCCAAAAAAATTTAAAAAATTCAGAATCACAAACAGTTTCAAAAATCGTGAAAA
431 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAA
* *
17531717 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAAGATTAAGGGACCATTGTATGAATTT
496 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* ** * * *
17531782 ACAAGCCATAGAAATTTCATT-ACGACGTC-GAAATAAGAAGATGTGCCTAAACCCACCTACCAC
561 ACAAGCCATAAAAATGGCATTGGC-AC-ACAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * * *
17531845 CCTATCAATCCACGACTTGCACATCCGGTCTGTCTGGCCGGCGTAGTGCCCGCCTGCCTGCCCGC
624 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-C--CC-GCCCGC
* * * **
17531910 TCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATACCCAGTCTAAGAT-TGAACCGGACCAAA
685 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACTGAA
** * ** * * * *
17531974 GGTTAAGGCAGCAGGATCGGTAGCACGTAAAGGGGGACCTGACCGATCCC-CGGCTTGTGAATCC
749 GGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACC-GACCGATCCCTCGGCTTGCGCATCC
* * * * * * * * *
17532038 TGCCCCTCTGG-CTAGCTGAGCACCCGCACGCTCATTTGGTGGATTGACATAGGCAGACAG
813 CGCCCCTCTGGCCGA-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
*
17532098 AGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
1 AGTTCATTCCC-A-GT---C-TA---AG--CA-T---A--C--AG----GACCAGACCGAGGGTT
* * * * * * *
17532163 G-TAGCAACACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCATCGTTGGGGCACCATC
43 GCGA-CAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATC
** * * *
17532227 ACCAGAGCATCGTCGGAGAACCTGACCGGCGGTATTTGGGTTCCGGCGATCGGGGGGACCGGGGG
107 GTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGG-CCGGGGG
* * * * *
17532292 GGTATGTGCACATGGTGTGCGATGGGTGCTGGTACTTGTCCCTTATATTGGGCCCCTATCCCTCA
171 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
** *
17532357 TCAAACCTCGAGAACTCGTACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAG
236 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* * *
17532422 CCATTAAAGTGTCTAAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGT
301 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* * *
17532487 TTTTAACTGAAGTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGAC
366 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * ** *
17532552 CAAAACTCCTTCCGAAACAATTTTAAAAAATCCTGAACTGCAAAAAGTTTTGAAAATCATG-AAA
431 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAA
* * *
17532616 ATAGAAAACGAGTCATCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCGTTGTATGAATTT
496 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
** ** *
17532681 ACAAGCCATAAAAATATCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAACACCC
561 ACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
*
17532746 TATCGATCCACGGCTTGCCCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTC
626 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCGCCCGCCCGCTC
* * * * * *
17532811 GTTTCGTTGGTTGGCTTAGGCATGCGGAGTTTATTCCCAGTCCAAGATCAGACTGGA-TCGAGGG
687 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAAGG
* * ** * *
17532875 TTACGGTAGCAGGATCAACAGCACGCAGAGGGGGACCTGGTCGAT-CCTCGGCTTGCACATCCCA
751 TTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACC-GACCGATCCCTCGGCTTGCGCATCCCG
* * * *
17532939 CCCCTCTGGCC-AGCTGAGCACTCGCATGCTTGTTTCGTGGGTTGACTTAGGCATACGG
815 CCCCTCTGGCCGA-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* *
17532997 AGTTCTTTCCCAGTCTAAGCATACGGAGTTCATTCCCAGCCTAAGATCGAACCAGATCGAGGGTT
1 AGTTCATTCCCAG--T---C-TA---AG--CA-T---A--C--AG---G-ACCAGACCGAGGGTT
* ** * * * *
17533062 GTGGTAGCACATGCTGGGCTCGAGAATGTGCTGGTGTCGTATTTTTCTTCATCGGCGCACCATCG
43 GCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATC-
* * ***** * *
17533127 GT-GGAGCATCATCGGAGAACCTAACCGATAAAATTGGGGTTCCGGTGATCGAGGGGCC-GGGGG
107 GTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGG
* * *
17533190 GTATGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCGCTATCCCTCAT
172 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* *
17533255 CAAACCTTGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
237 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
*
17533320 CATTAAAGTGT-TCGAAATGTGGACACTTTTTTCAAATGGTC-CAAAA
302 CATTAAAGTGTCT-GAAATGGGGACACTTTTTTCAAATGGTCACAAAA
17533366 AAATTTTAAA
Statistics
Matches: 7186, Mismatches: 926, Indels: 414
0.84 0.11 0.05
Matches are distributed among these distances:
857 3 0.00
858 2 0.00
859 4 0.00
860 226 0.03
861 319 0.04
862 102 0.01
863 83 0.01
864 4 0.00
865 101 0.01
866 486 0.07
867 226 0.03
868 589 0.08
869 266 0.04
870 400 0.06
871 2 0.00
872 1 0.00
873 4 0.00
874 12 0.00
875 108 0.02
876 83 0.01
877 4 0.00
878 2 0.00
879 4 0.00
880 1 0.00
882 1 0.00
883 1 0.00
887 1 0.00
888 3 0.00
889 1 0.00
890 3 0.00
891 180 0.03
892 5 0.00
894 1 0.00
895 2 0.00
896 522 0.07
897 395 0.05
898 16 0.00
899 1200 0.17
900 617 0.09
901 25 0.00
902 740 0.10
903 202 0.03
904 218 0.03
905 5 0.00
906 4 0.00
907 4 0.00
908 2 0.00
909 3 0.00
910 1 0.00
913 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (872 bp):
AGTTCATTCCCAGTCTAAGCATACAGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGA
GCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTG
ACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGG
GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
CACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
TTCATTCCCAGTCTAAGATCAGACCGGACTGAAGGTTGCGGTAGCAGGATCGACAGCACGCAGAG
GGGGACCGACCGATCCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTC
GTTTCGTGGGTTGACTTAGGCATACGG
Found at i:17529425 original size:26 final size:26
Alignment explanation
Indices: 17529395--17529447 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17529385 GTTGACTTAG
* *
17529395 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
17529421 GCATACAGAGTTCATTGCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17529447 G
1 G
17529448 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17530327 original size:26 final size:26
Alignment explanation
Indices: 17530291--17530343 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17530281 GTTGACTTAG
17530291 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
17530317 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17530343 G
1 G
17530344 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17531229 original size:26 final size:26
Alignment explanation
Indices: 17531193--17531242 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
17531183 GACTTAGGCA
17531193 TACGGAGTTCATT-CCCAGTCTAAGCG
1 TACGGAGTTCATTCCCCA-TCTAAGCG
17531219 TACGGAGTTCATTCCCCATCTAAG
1 TACGGAGTTCATTCCCCATCTAAG
17531243 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCCATCTAAGCG
Found at i:17533018 original size:26 final size:26
Alignment explanation
Indices: 17532989--17533041 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17532979 GTTGACTTAG
* *
17532989 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
17533015 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
17533041 G
1 G
17533042 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:17534694 original size:26 final size:26
Alignment explanation
Indices: 17534664--17534716 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17534654 GTTGACTTAG
* *
17534664 GCATACGAAGTTCATTCCCAGTTTAA
1 GCATACGAAGTTCATTCCAAGTCTAA
*
17534690 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGAAGTTCATTCCAAGTCTAA
17534716 G
1 G
17534717 ATCGGGCCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCAAGTCTAA
Found at i:17535614 original size:26 final size:26
Alignment explanation
Indices: 17535562--17535614 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17535552 GTTAACTTAG
*
17535562 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
17535588 GCATACGGAGTTCATTTCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17535614 G
1 G
17535615 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17535624 original size:903 final size:896
Alignment explanation
Indices: 17533787--17540045 Score: 5144
Period size: 903 Copynumber: 6.8 Consensus size: 896
17533777 ATTGACTTAG
* *** * *
17533787 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATTAAGGGTTACAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC--ACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
17533852 CTCAGGCATGTGCTGGTGTCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
64 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATC-TCGGAGA
* * *
17533917 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCAGGAGGGCCGGGGGGGTGTGCGCACATGATGTG
128 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
* *
17533982 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTCGAGAACTCAC
192 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
17534047 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTAAAAT
257 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
* * * *
17534112 GGGGACACTTTTTGCAAATGGACACAAAATCTTGTACACGTCGAGTTTTTAGCTCAA-TTTTTTG
322 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
17534176 TGCATACCAACAAAAATACAAGGATCTCGTCTACCACGTTTGGGGCCAAAACTCCTTTC-AAAAA
387 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
* *
17534240 TATTTTAAAAAATCCCGAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCT
452 -ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * *
17534305 TGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAGGCCATAAAAATGGC
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
17534370 ATTGGCATGTAGAAATATGAATATGTGCCTAAATCCACCTACCACCCTATCGATTCACGGCTTGC
581 ATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * * *
17534435 GCATCCCGTCTCTCTAGTCGGCGTGGT-GCTCGCCCACCCGCATGTCC-GCTCGTTTCGTCGGCT
646 GCATCCCGTCTTTCT-GGCCG-GT-GTAG-T-GCCCGCCCGCCTG-CCTGCTCATTTCGTCGGTT
* * * ** ** * *
17534498 GGCTTAGGCATATGGAGTTCATTCACAGTCAAAG-TTTGGGCTGGACCGAGGGTTGCGGTAGCAG
705 GGCTTAGGCATATAGAGTTCATTCCCAGTCTAAGATCAGATC-GAACCGAGGGTTGCGGCAGCAG
* * * * * * *
17534562 GATCGGTAGCATGCAGAGGGGGACCCGATCGATCCTCAGCTTGTGCATCTCGCCCCTCTGGCCGG
769 GATCGGCAGCACGCAGAAGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * * * *
17534627 CTGAGCGCCCGTACGATCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTTTAA
834 CTGAGCGCCCGCACGCTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
17534690 GCATACGGAGTTCATTCCAAGTCTAAGATCGGGCCAGACCGAGGGTTGCAGCAGCACATGCCGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC--ACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * ** * *
17534755 CTCGAGCATGGGCTGGCGCTACATTTTTCTTCGTCGAGGCACCATCGCCGGAGCATCATCGGAGA
64 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATC-TCGGAGA
* * * * *
17534820 ACCTGACTGGCGGCTTTGGGGTTCCAACGATCGGGGGGGCTGGGGGGTTGTGCACACATGATGTG
128 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGG-TGTGCGCACATGATGTG
** * * *
17534885 CGATGGGTGCTCATACTTGGCCTTTATAGTGGCCCCCTATCCCTCATCAAAGCTCGAGAACTCAC
192 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * * * *
17534950 ACGCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCTGTAGCCTTTAAAGTGTTTGAAAT
257 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
* *
17535015 TGGGACACTTTTTTCAAATGGTGACAAAAT-TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
322 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
17535079 TGCATGCGAAAAAAAATACAAGGATCACGTCTACCAA-TTTGGGGCCAAAACTCCTTTCAAAAAA
387 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
* * *
17535143 ATTTTAAAAAATCCCGACCCATAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTC-TGCT
452 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT-CT
* * *
17535207 TGCAATGAAACTTGATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** * * *
17535272 ATTGGCACATAAAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCATGGCTTGC
581 ATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
17535337 GCATCCCGTCTTTCTGGTCGATGTAGTGCCCGCCCGCCTGCCTGCTCATTGCGTCGGTTGGCTTA
646 GCATCCCGTCTTTCTGGCCGGTGTAGTGCCCGCCCGCCTGCCTGCTCATTTCGTCGGTTGGCTTA
* * *
17535402 GGCATATAGAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGATTGTGGCAGCAGGATCGAC
711 GGCATATAGAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTTGCGGCAGCAGGATCGGC
* * * * * *
17535467 AACACGCAGAAAGGG-CCCTGGCCGATCCTCGGCTTGTGCATCCCGCCCCTCTAGTCGGCTGAGC
776 AGCACGCAGAAGGGGACCC-GACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * * * *
17535531 GCCCACACGCTCATTCCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCATTCTAA
840 GCCCGCACGCTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
17535588 GCATACGGAGTTCATTTCCAGTGTAAGATCAGATCGGACCGAGGGTTGCGGCTGCAGATGCTGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATC--ACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
17535653 CTCGGGCATGTGCTGGTGCCGCATCTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCTGGAGA
64 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCTC-GGAGA
**** * * * ** ****** * ** * *
17535718 ACC-GTA--AAAAG-TTTGAGG--CCAAAAAT-ATTTTTG-AGGGTTGTG-GTAGTACAT-ACTG
128 ACCTG-ACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTG-CGCACATGA-TG
* *** * **** *** * * ** * * *
17535773 GGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCA-CCGGGGCACC-ATCGCCGGAGC-ATCGTC
190 TGCGATGG---GTGCTGGT-AC-T-TGGCCCTT-ATATTGGCCCCCTATC-CCTCATCAAACCTC
** ** ** ** * ** ** **
17535835 GGAGAAC-CTGA-CCGGTGATATTGGGGTTCCAGCGATCGGGGGGGTCGAGGGGGTGTGTGC-GC
247 -GAGAACTCACACCCCCT--TA---AAG----AGC-AT-TTGAGATTTTA-CAGGT-T-TGCTGC
* * * * * * * ** **
17535897 ACA-T-G--ATGTGCGAAGGGTGCTAGTACT-TGG-CCCTTATATTGGCCCGCTATCCCTCATC-
297 -CAGTAGCCAT-T--AAAGTGT-CTA-AAATGGGGACACTT-T-TT---TC-AAAT-GGTCA-CA
* * ** *
17535955 AAACCTTGAAAACTCACACCCCCTTAAAGAGAATTT-G-AG-ATTTTACAGGTTTGCTGCCAGTA
348 AAATCTTG-----T-ACA----CTT--CGAGTTTTTAGCTGAATTTT-----TTTG-TG-CA-T-
**** * * * * *
17536017 GCCATTAAAGTGTTTGA-AATGGGGA-CACTTTTATCAA--AT-GGTCACAAAATCTTGTACAC-
392 GCCA--AAA-AAAAT-ACAA---GGATCACGTCTACCAAGTTTGGGGC-CAAAA-C---T-C-CT
** ** * **
17536076 TTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAAAAAAAATACAAGGATCACGTCTACCAAG
443 TTCGA------A----AA---AATT-T---T------AAAAAAT-C-CCGAAC-CG--TAAAAAG
** * * ** *** *** *
17536141 TTTCGGGCCAAAACCCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAA-A
480 TTT-----CAAAA-ATCAT--G-AAAAA---TAGAAAA---CGAGTCGT--CTTGCCATGAAACT
*** * ** * * * * * ** *
17536205 T--CGTGAAAAATAGAAAACGAGTCATCTCGCCATGACACTTCACGTGAAGGCTTAAGGGAT--T
528 TCACGTGAAGGCT--TAAGGGA-CCAT-T-G-TATGA-A-TTTAC---AAGCCATAA-AAATGGC
* * ** ** ** *
17536266 ATTGTATGAATTTACCAGCCATAAAAACGGCAT-TGGCACATAGAAATATGAACATGTGCCTA-A
581 ATTG---GCATGT---AGAAATATGAA--G-ATGT-GC-C-T---AA-A--CCCA----CCTACC
* * * * * * ** * ** * **
17536329 ACCC-ACCTA-CCAC-CCTAT-CG-ATCCACGGCTTGC-GCATCCCATCTCTCTGGCTGGCGTAG
624 ACCCTATCGATCCACGGCT-TGCGCATCC-CGTCTTTCTG--GCCGGTGT-AGT-GC--CCG-CC
* * **
17536388 TGCCTGCCCGCCTGCCTGCATGCTCGTTTTGTCGGTTGGGC-TAGGCATACGGAGTTCATTCCCA
680 CGCCT----GCCTG-CT-CA------TTTCGTCGGTT-GGCTTAGGCATATAGAGTTCATTCCCA
* * * * * *
17536452 GTCTAAGATCGGATCGAACCGATGGTTACGGCAACAGGATCGGCAGCACGTAGAGGGGGACCCGA
732 GTCTAAGATCAGATCGAACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAAGGGGACCCGA
* ** * * * * *
17536517 CCGATCC-CTGGCTTACGCATCTAGCCCCTCTGGTCGGTTAAGTGCCCGCACACTCGTTTCATGG
797 CCGATCCTC-GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGG
* *
17536581 GTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
861 GTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
17536617 GCATACGGAGTTCATTCTCAGTCTAAGATCAGATCGGATCGAGGGTTGTGGCAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC--ACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
17536682 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCA---TC---G----TCGGAGAA
64 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCTCGGAGAA
* * * * * * * * *
17536737 CCTGACCGGCGACATTAGGGTTCTGGCAATCGGAGGGGTCGAGGGGTATGCGCACATGATGTGCG
129 CCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
17536802 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
194 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
17536867 CCCCTTAAAGAGAATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGG
259 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGG
* * * *
17536932 GGACACTTTTTTCAAATGGTTACAAAATCTTGTACACTTCGTG-TTGTAGCTGAATTCTTTTGTG
324 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * *
17536996 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCCGAAGAAAT
389 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAT
* * * * * **
17537061 TTTAAAAAATCTCGAACTGTAAAAAGTTTCAAAAATCGTGAAAAATGGAAAACGAGTTGTCTCAC
454 TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* *
17537126 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTAAAAAGCCATAAAAATGGCATT
519 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * * * *
17537191 GGCACAG-AGAAATATGAAGATGTTCCTAAACCCACCTGCCACCTTATCGATCCATGGCTTACGC
584 GGCA-TGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * *
17537255 ATCCCATCTCTT-TGACCGGTGTAGT----GCCCGCCTGCCCGTTCGTTTCGTCGGTTGGCTTAG
648 ATCCCGTCT-TTCTGGCCGGTGTAGTGCCCGCCCGCCTGCCTGCTCATTTCGTCGGTTGGCTTAG
* * * *
17537315 GCATA-AGAAGTTCATTCCCAGTCTAATATCTGATC-AGACCAAGGGTTGCGGCAACAGGATCGG
712 GCATATAG-AGTTCATTCCCAGTCTAAGATCAGATCGA-ACCGAGGGTTGCGGCAGCAGGATCGG
* * * * * * * * * * *
17537378 TAGCACGTAGAGGGGGACTCGGCCGATCCCCGACTTGCGCATCTCGCCTCTTTGGCCGGTTGAGC
775 CAGCACGCAGAAGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* *
17537443 ACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
840 GCCCGCACGCTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
17537500 GCATATGGAGTTCATTCCCAATCTAAGATCGAACCAGACCGAGGGTTACGGTAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC--ACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
** * * *
17537565 CTCAAGCATGTGCTGGTGCCGTATTTTTCTTCATCGAGGCACCA---TC---G----TCGGAGAA
64 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCTCGGAGAA
* * * *
17537620 CCTGACCGGTGGCATTGGGATTCCGGA-GATCGAGGGGGCCGAGGGGGTGTGCACACATGATGTG
129 CCTGACCGGCGGCATTGGGGTTCC-GACGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGTG
* * * ** *
17537684 CGATGGGTTCTGGTACTTGGCCTTTATATAGAACCCCTATCCCTCATCAAACCTTGAGAACTCAC
192 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
17537749 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGTCATTAAAGTGTCTGAAAT
257 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
* * *
17537814 GGGGGCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTAGGTGAA-TTTTTTG
322 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * ** *
17537878 TGCACGCCAAAAAAAATACAAGGATCATGTCTATGAACTTTGGGGCCAAAACTCCTTTCGAAAAA
387 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
* * *
17537943 ATTTTAAAAAA-CCTTGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCT
452 ATTTTAAAAAATCC-CGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
17538007 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
17538072 ATTGGCATGCAAAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCGCGGCTTGC
581 ATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
17538137 GCATCCCGTCTCTT-TGGCCGGTGTAGTGCTCGCCCGCCCACCCGCCTGCTCGTTTCATCGGTTG
646 GCATCCCGTCT-TTCTGGCCGGTGTA--G-T-GCCCGCCCGCCTGCCTGCTCATTTCGTCGGTTG
* * * ** * *
17538201 GCTTAGG--TGTACGAAGTTCATTCCCAGTCTAAGATTAGA-CTGGAGTGAGGGTAGCGGTAGCA
706 GCTTAGGCATATA-G-AGTTCATTCCCAGTCTAAGATCAGATC-GAACCGAGGGTTGCGGCAGCA
* ** * * * * *
17538263 AGATCAACAACATGCAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCG
768 GGATCGGCAGCACGCAGAAGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCG
* *
17538328 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
833 GCTGAGCGCCCGCACGCTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
17538392 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC--ACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * ** * *
17538457 CTCGGGTAAGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCACCGGAACATCGTCGAAGA
64 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATC-TCGGAGA
* * * *
17538522 ACCTGATCGACGGCATTGGGGTTCCGACGATCAGGGTGGCCGGGGGGTGTGCGCACATGATGTGC
128 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
17538587 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCACA
193 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
17538652 CCCCCTTAAAGAGCATTTGACATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTTAAATG
258 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
** *
17538717 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTTAGTTTTTAGCTGAATAGTTTTT-
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTTG
* * * *
17538781 TGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAA
387 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
* * ** *
17538846 ATTGTAAAAAATCCTGAACCACAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTT
452 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
** *
17538911 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGATATAGAAATGGCA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** *
17538976 TTGGTGTGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGGTCCACGGCTTGCG
582 TTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
17539041 CATCCCGTCTTTCTGGCCGGCGTAGTGCCCGCTCGCCCGCCTGCTCACTCGTTTCATCGGTTGGC
647 CATCCCGTCTTTCTGGCCGGTGTAGTGCCCGCCCGCCTGCCTGCTCA----TTTCGTCGGTTGGC
* * * * ** * * * * * *
17539106 TTAGGCATACAAACTTCATTCCCAGTATAAGATTGGACCGGACCTAGTGTTGCAGCAGCAGGATT
708 TTAGGCATATAGAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTTGCGGCAGCAGGATC
* * * * * **
17539171 GGCAGTACGCA-AAGGATGACCCGATCGAACCTCGACTTGCGCATCCCGCCCCTCTGGCCGATTG
773 GGCAGCACGCAGAAGG-GGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * *
17539235 ATCGCCCGTACGCTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCCAATCTAA
837 AGCGCCCGCACGCTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
17539295 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC--ACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
17539360 CTCGGGCATGTGCTGGTGCCACATTTTTCTTC-TAGGGGCACCATCGTCGGAGCATCACCGGAGA
64 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATC-TCGGAGA
* * *
17539424 ACCTGGCCGACGGCATTGGGGTTCTGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGC
128 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
17539488 GATGGGTGCTGGTACTTTGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGGAGAACTCACA
193 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
17539553 CCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
258 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
*
17539618 GGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* ** *
17539683 GCAAGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTATGGCCAAAACTAC-TTCTGAAAAA
388 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAAAA
* * * * * * *
17539747 ATATTAAAAAATCTCAAACCGTAAAAAGTGTCACAAATCATGAAAAACAAAAAACGAGTCGTCTT
452 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * * *
17539812 GCCATTAAACTTTACGTCAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATAAAAATGGCA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
17539877 TTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTAACCACCCTATCGATCCA-GG-TTGT
582 TTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCT-ACCACCCTATCGATCCACGGCTTGC
* ** * * * *
17539940 GCATTCCCGTCTCTCTGGCCGACGTA-TGGCCACCCGCC-GCCCTGTCGCGGTTTTCGTCGGTTG
646 GCA-TCCCGTCTTTCTGGCCGGTGTAGTGCCCGCCCGCCTG-CCTG-CTC--ATTTCGTCGGTTG
17540003 GCTTAGGCAT-TGACGAGTGTCATTCCCAGTCTAAGATCAGATC
706 GCTTAGGCATAT-A-GAGT-TCATTCCCAGTCTAAGATCAGATC
17540046 CGGACTCAAA
Statistics
Matches: 4260, Mismatches: 805, Indels: 584
0.75 0.14 0.10
Matches are distributed among these distances:
882 5 0.00
883 305 0.07
884 436 0.10
885 9 0.00
886 1 0.00
887 1 0.00
889 3 0.00
890 14 0.00
891 10 0.00
892 279 0.07
893 12 0.00
894 3 0.00
895 20 0.00
896 22 0.01
897 8 0.00
898 285 0.07
899 48 0.01
900 31 0.01
901 463 0.11
902 512 0.12
903 895 0.21
904 19 0.00
905 16 0.00
906 10 0.00
907 14 0.00
908 10 0.00
909 4 0.00
911 1 0.00
912 2 0.00
913 5 0.00
914 7 0.00
915 4 0.00
916 7 0.00
919 2 0.00
920 3 0.00
921 10 0.00
922 4 0.00
924 8 0.00
925 5 0.00
926 5 0.00
927 7 0.00
928 1 0.00
929 12 0.00
930 7 0.00
931 7 0.00
932 8 0.00
933 3 0.00
934 5 0.00
935 3 0.00
936 6 0.00
937 12 0.00
938 11 0.00
939 3 0.00
940 2 0.00
941 6 0.00
942 5 0.00
943 1 0.00
946 8 0.00
948 2 0.00
949 3 0.00
950 1 0.00
951 7 0.00
952 2 0.00
955 2 0.00
956 1 0.00
957 1 0.00
959 1 0.00
960 1 0.00
961 2 0.00
964 1 0.00
965 7 0.00
966 1 0.00
967 3 0.00
968 2 0.00
970 8 0.00
973 1 0.00
974 5 0.00
975 5 0.00
976 5 0.00
977 9 0.00
978 3 0.00
979 14 0.00
980 5 0.00
982 10 0.00
983 1 0.00
984 8 0.00
985 6 0.00
986 10 0.00
987 9 0.00
988 3 0.00
989 4 0.00
990 5 0.00
991 8 0.00
992 4 0.00
994 4 0.00
995 10 0.00
996 3 0.00
997 3 0.00
1000 7 0.00
1001 9 0.00
1002 4 0.00
1003 5 0.00
1004 1 0.00
1006 4 0.00
1007 11 0.00
1008 15 0.00
1009 5 0.00
1010 10 0.00
1011 16 0.00
1012 10 0.00
1013 4 0.00
1014 6 0.00
1015 4 0.00
1016 3 0.00
1017 4 0.00
1018 10 0.00
1019 23 0.01
1020 10 0.00
1021 13 0.00
1022 10 0.00
1023 7 0.00
1024 256 0.06
1025 325 0.08
1026 283 0.07
1027 470 0.11
1028 304 0.07
1029 498 0.12
1030 300 0.07
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (896 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCT
CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCTCGGAGAACC
TGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTT
TAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTTTCTGGCCGGTGTAGTGCCCGCCCGCCTGCCTGCTCATTTCGTCGGTTGGCTTAGGCAT
ATAGAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTTGCGGCAGCAGGATCGGCAGCAC
GCAGAAGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
ACGCTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:17536621 original size:26 final size:26
Alignment explanation
Indices: 17536591--17536643 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17536581 GTTGACTTAG
*
17536591 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17536617 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17536643 G
1 G
17536644 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17537504 original size:26 final size:26
Alignment explanation
Indices: 17537474--17537526 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17537464 GTTGACTTAG
*
17537474 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
17537500 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
17537526 G
1 G
17537527 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:17537990 original size:884 final size:888
Alignment explanation
Indices: 17535828--17540050 Score: 5355
Period size: 903 Copynumber: 4.7 Consensus size: 888
17535818 ATCGCCGGAG
* ** * * *
17535828 CATCGTCGGAGAACCTGACCGGTGATATTGGGGTTCCAGCGATCGGGGGGGTCGAGGGGGTGTGT
1 CATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGAGATC-GGGGGGCCGA-GGGG-GTGT
* * *
17535893 GCGCACATGATGTGCGAAGGGTGCTAGTACTTGGCCCTTATATTGGCCCGCTATCCCTCATCAAA
63 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* * *
17535958 CCTTGAAAACTCACACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
128 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* * *
17536023 AAAGTGTTTGAAATGGGGACACTTTTATCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
193 AAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
*
17536088 GCTGAATGTTTTTGTGCATGCCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTCGGGCCAAA
258 GCTGAAT-TTTTTGTGCATGCC-AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* ** *
17536153 ACCCCTTCCGAAAAAATTTTAAAAAATCC-CGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATA
321 ACTCCTTCCGAAAAAATTTTAAAAAA-CCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATA
* * * ** *
17536217 GAAAACGAGTCATCTCGCCATGACACTTCACGTGAAGGCTTAAGGGATTATTGTATGAATTTACC
385 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* * *
17536282 AGCCATAAAAACGGCATTGGCACATAGAAATATGAACATGTGCCTAAACCCACCTACCACCCTAT
450 AGCCATAAAAATGGCATTGGCACAGAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* *
17536347 CGATCCACGGCTTGCGCATCCCATCTCTCTGGCTGGCGTAGTGCCTGCCCGCCTG-CCTGCATGC
515 CGATCCACGGCTTGCGCATCCCATCTCTTTGGCCGGCGTAG-G-CTGCCCGCCTGCCCTGC-T-C
** * * ** * *
17536411 TCGTTTTGTCGGTTGGGC-TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAT
576 TCGTTTCATCGGTT-GGCTTAGGCATAAGAAGTTCATTCCCAGTCTAAGATTAGATCGGACCGAG
* * * * **
17536475 GGTTACGGCAACAGGATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCTGGCTTACGCATCTA
640 GGTTGCGGCAACAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTACGCATCCC
* * * * *
17536540 GCCCCTCTGGTCGGTTAAGTGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCA
705 GCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
* * * * **
17536605 TTCCCAGTCTAAGCATACGGAGTTCATTCTCAGTCTAAGATC-AGATCGGATCGAGGGTTGTGGC
770 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACCGAGGGTTACGGC
* * * *
17536669 AGCACATACTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCAC
834 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCAC
* * * * *
17536724 CATCGTCGGAGAACCTGACCGGCGACATTAGGGTTCTGGCA-ATCGGAGGGGTCGA-GGGGTATG
1 CATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGG-AGATCGG-GGGGCCGAGGGGGTGTG
17536787 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
64 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* *
17536852 CTCGAGAACTCACACCCCCTTAAAGAGAATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTA
129 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* * *
17536917 AAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTTACAAAATCTTGTACACTTCGTG-TTGTAG
194 AAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
*
17536981 CTGAATTCTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
259 CTGAATT-TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* * * * * *
17537046 TCCATCCGAAGAAATTTTAAAAAATCTCGAACTGTAAAAAGTTTCAAAAATCGTGAAAAATGGAA
323 TCCTTCCGAAAAAATTTTAAAAAACCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAA
* ** * *
17537111 AACGAGTTGTCTCACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTAAAAAGC
388 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* * *
17537176 CATAAAAATGGCATTGGCACAGAGAAATATGAAGATGTTCCTAAACCCACCTGCCACCTTATCGA
453 CATAAAAATGGCATTGGCACAGAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * *
17537241 TCCATGGCTTACGCATCCCATCTCTTTGACCGGTGTA-G-TGCCCGCCTGCCC-G-T-TCGTTTC
518 TCCACGGCTTGCGCATCCCATCTCTTTGGCCGGCGTAGGCTGCCCGCCTGCCCTGCTCTCGTTTC
* * * *
17537301 GTCGGTTGGCTTAGGCATAAGAAGTTCATTCCCAGTCTAATATCT-GATCAGACCAAGGGTTGCG
583 ATCGGTTGGCTTAGGCATAAGAAGTTCATTCCCAGTCTAAGAT-TAGATCGGACCGAGGGTTGCG
* * * * * * * *
17537365 GCAACAGGATCGGTAGCACGTAGAGGGGGACTCGGCCGATCCCCGACTTGCGCATCTCGCCTCTT
647 GCAACAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTACGCATCCCGCCCCTC
*
17537430 TGGCCGGTTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
712 TGGCCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * *
17537495 TCTAAGCATATGGAGTTCATTCCCAATCTAAGATCGAACCAGACCGAGGGTTACGGTAGCACATG
777 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGGCAGCACATG
* ** * *
17537560 CTAGGCTCAAGCATGTGCTGGTGCCGTATTTTTCTTCATCGAGGCAC
842 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCAC
* *
17537607 CATCGTCGGAGAACCTGACCGGTGGCATTGGGATTCCGGAGATCGAGGGGGCCGAGGGGGTGTGC
1 CATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGAGATCG-GGGGGCCGAGGGGGTGTGC
* * * * **
17537672 ACACATGATGTGCGATGGGTTCTGGTACTTGGCCTTTATATAGAACCCCTATCCCTCATCAAACC
65 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* *
17537737 TTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGTCATTAA
130 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * * *
17537802 AGTGTCTGAAATGGGGGCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTAGG
195 AGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * ** *
17537867 TGAATTTTTTGTGCACGCCAAAAAAAATACAAGGATCATGTCTATGAACTTTGGGGCCAAAACTC
260 TGAATTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* * * *
17537932 CTTTCGAAAAAATTTTAAAAAACCTTGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAA
325 CTTCCGAAAAAATTTTAAAAAACCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
17537997 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
390 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
*
17538062 TAAAAATGGCATTGGCATGCA-A-AAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGA
455 TAAAAATGGCATTGGCA--CAGAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * **
17538125 TCCGCGGCTTGCGCATCCCGTCTCTTTGGCCGGTGTAGTGCTCGCCCGCCCACCC-GCCTGCTCG
518 TCCACGGCTTGCGCATCCCATCTCTTTGGCCGGCGTAG-GCT-GCCCGCCTGCCCTG-CT-CTCG
** * **
17538189 TTTCATCGGTTGGCTTAGGTGTACGAAGTTCATTCCCAGTCTAAGATTAGA-CTGGAGTGAGGGT
579 TTTCATCGGTTGGCTTAGGCATAAGAAGTTCATTCCCAGTCTAAGATTAGATC-GGACCGAGGGT
* * * * ** * * *
17538253 AGCGGTAGCAAGATCAACAACATGCAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCGCC
643 TGCGGCAACAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTACGCATCCCGCC
* *
17538318 CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
708 CCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTC
*
17538383 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCA
773 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGGCAGCA
* *
17538448 CATGCTGGGCTCGGGTAAGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCAC
838 CATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCAC
* * *
17538499 CATCACCGGAACATCGTCGAAGAACCTGATCGACGGCATTGGGGTTCC-GACGATCAGGGTGGCC
1 CAT---C-G----TCG--G-AGAACCTGACCGGCGGCATTGGGGTTCCGGA-GATC-GGGGGGCC
17538563 G-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
53 GAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * *
17538627 TCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGACATTTTACAGGTTTGCTACC
118 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
*
17538692 AGTAGCCATTAAAGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
183 AGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
** * *
17538757 TTAGTTTTTAGCTGAATAGTTTTT-TGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTT
248 CGAGTTTTTAGCTGAAT--TTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTT
* * **
17538821 TGGGGCCAAAAATCCTTCCGAAAAAATTGTAAAAAATCCT-GAACCACAAAAAGTTTCAAAAATC
311 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA-CCTCGAACCGTAAAAAGTTTCAAAAATC
*
17538885 ATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
375 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
** * ***
17538950 TGAATTTACAAGATATAGAAATGGCATTGG-TGTGTAGAAATATGAAGATGTGCCTAAACCCACC
440 TGAATTTACAAGCCATAAAAATGGCATTGGCACAG-AGAAATATGAAGATGTGCCTAAACCCACC
* * * *
17539014 TACCACCCTATCGGTCCACGGCTTGCGCATCCCGTCT-TTCTGGCCGGCGTAGTGCCCGCTCGCC
504 TACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTT-TGGCCGGCGTAG-G-CTGCCCGCC
* * * *
17539078 CG-CCTGCTCACTCGTTTCATCGGTTGGCTTAGGCATACA-AACTTCATTCCCAGTATAAGATTG
566 TGCCCTGCT--CTCGTTTCATCGGTTGGCTTAGGCATA-AGAAGTTCATTCCCAGTCTAAGATTA
* * * * * * * * ** * * *
17539141 GACCGGACCTAGTGTTGCAGCAGCAGGATTGGCAGTACGCAAAGGATGACCCGATCGAACCTCGA
628 GATCGGACCGAGGGTTGCGGCAACAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGA
* * * * *
17539206 CTTGCGCATCCCGCCCCTCTGGCCGATTGATCGCCCGTACGCTCGTTTCATGGGTTAACTTAGGC
693 CTTACGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGC
* * * *
17539271 ATACGGAGTTCATTCCCAATCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
758 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCG
* * * *
17539336 AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTC-TAGGGGCA
823 AGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCA
17539400 C
888 C
* *
17539401 CATCGTCGGAGCATCACCGGAGAACCTGGCCGACGGCATTGGGGTT-CTGACGATCGGGGGGCCG
1 CATCGTCGGAG-A--ACC--TG-ACC--G--G-CGGCATTGGGGTTCCGGA-GATCGGGGGGCCG
*
17539465 -GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTTGCCCTTATATTGGCCCCCTATCC
54 AGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* *
17539529 CTCATCAAACCTGGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCA
119 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
*
17539594 GTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTC
184 GTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* *
17539659 GAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTA
249 GAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * * * * * *
17539724 TGGCCAAAACTACTTCTGAAAAAATATTAAAAAATCTCAAACCGTAAAAAGTGTCACAAATCATG
313 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAACCTCGAACCGTAAAAAGTTTCAAAAATCATG
* * * * * *
17539789 AAAAACAAAAAACGAGTCGTCTTGCCATTAAACTTTACGTCAAGGCTTAAGGGACCATTGTTTGA
378 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
*
17539854 ATTTACAAGCCATAAAAATGGCATTGGCA-TGTAGAAATATGAAGATGTGCCTAAACCCACCTAA
443 ATTTACAAGCCATAAAAATGGCATTGGCACAG-AGAAATATGAAGATGTGCCTAAACCCACCT-A
* * * * **
17539918 CCACCCTATCGATCCA-GG-TTGTGCATTCCCGTCTCTCTGGCCGACGTATGGCCACCCGCC-GC
506 CCACCCTATCGATCCACGGCTTGCGCA-TCCCATCTCTTTGGCCGGCGTA-GGCTGCCCGCCTGC
* * * *
17539980 CCTG-TCGCGGTTTTCGTCGGTTGGCTTAGGCAT-TGACGAGTGTCATTCCCAGTCTAAGATCAG
569 CCTGCTCTC-G-TTTCATCGGTTGGCTTAGGCATAAGA--AGT-TCATTCCCAGTCTAAGATTAG
17540043 ATCCGGAC
629 AT-CGGAC
17540051 TCAAAGGGTT
Statistics
Matches: 2920, Mismatches: 330, Indels: 148
0.86 0.10 0.04
Matches are distributed among these distances:
882 4 0.00
883 310 0.11
884 436 0.15
885 13 0.00
886 3 0.00
887 12 0.00
888 13 0.00
889 1 0.00
890 2 0.00
891 248 0.08
892 298 0.10
893 181 0.06
894 9 0.00
895 3 0.00
896 47 0.02
897 4 0.00
898 3 0.00
899 25 0.01
900 29 0.01
901 453 0.16
902 259 0.09
903 556 0.19
904 11 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (888 bp):
CATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGAGATCGGGGGGCCGAGGGGGTGTGCG
CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
GTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
GAATTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
TTCCGAAAAAATTTTAAAAAACCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
AAAAATGGCATTGGCACAGAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
ACGGCTTGCGCATCCCATCTCTTTGGCCGGCGTAGGCTGCCCGCCTGCCCTGCTCTCGTTTCATC
GGTTGGCTTAGGCATAAGAAGTTCATTCCCAGTCTAAGATTAGATCGGACCGAGGGTTGCGGCAA
CAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTACGCATCCCGCCCCTCTGGC
CGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
AGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGGCAGCACATGCTGG
GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCAC
Found at i:17538402 original size:26 final size:26
Alignment explanation
Indices: 17538366--17538418 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17538356 GTTGACTTAG
17538366 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17538392 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17538418 G
1 G
17538419 ATCGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17539299 original size:26 final size:26
Alignment explanation
Indices: 17539269--17539321 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17539259 GTTAACTTAG
17539269 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
17539295 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
17539321 G
1 G
17539322 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:17540976 original size:26 final size:26
Alignment explanation
Indices: 17540940--17540992 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17540930 GTTGACTTAG
17540940 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17540966 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17540992 G
1 G
17540993 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17541884 original size:26 final size:26
Alignment explanation
Indices: 17541848--17541897 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
17541838 GACTTAGGCA
*
17541848 TACGGAGTTCATTCCCAGTCTAAGCG
1 TACGAAGTTCATTCCCAGTCTAAGCG
*
17541874 TACGAAGTTCATTTCCAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
17541898 ATCGGACCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCG
Found at i:17541990 original size:905 final size:903
Alignment explanation
Indices: 17540241--17550953 Score: 13208
Period size: 904 Copynumber: 12.0 Consensus size: 903
17540231 GAGGGGGTAG
*
17540241 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCAGTATAATTGG-CCCCTATCCCTCATC
1 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCATTAT-ATTGGCCCCCTATCCCTCATC
* *
17540305 AAACCTCAAGAACTCAC-CCCCTCTTAAAGGAGCATTTTGAGGA-TTCACAGAGTTTG-T-CCAG
65 AAACCTCGAGAACTCACACCCC-CTTAAA-GAGCA-TTTGA-GATTTTACAG-GTTTGCTGCCAG
* * * *
17540366 TAGCCATTAAAGTTTTTGAAATGGGGA-ACCTTTTTTCAAATGGACACAAAATCTTGTACACTTT
125 TAGCCATTAAAGTGTCTGAAATGGGGACA-CTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * *
17540430 GAGTTTCTAGCTTAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAATTTTG
189 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
** ** **
17540495 GACCCAAAACTCCTTCCGAAAAAATTTTAAAAAATGTCGAACCATAAAAAGTTTCAAAAATCGTG
254 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTG
*
17540560 AAAAA-AAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
319 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* **
17540624 ATTTACAAGCCATAAAAATGGTATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
384 ATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACC
17540689 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCC
449 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCC
* * * * * * *
17540754 GCCCGCTCATTTTGCCGATTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGA
514 GCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
* * * * * * * * *
17540819 CCAAGGGTTGTGGCAGCAGGATCGGCAGCATGCAAAGAAGGACCCAGTCGATCCACGGCTTGTGC
579 CCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGAGGGACCCGGCCGATCCTCGGCTTGCGC
* * ** * *
17540884 ATGCCGCCCCTCTAGCCAACTGAGCGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGA
644 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* ** *
17540949 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTTCCAGTCTAAGATCGGACTGGACCGAGGGTTA
709 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG
* * * * * *
17541014 TGGCAGCACATGCTGGGCTTGAGCATGTGCTGGTGCCGCATTTTTCTTC-GCTGGGGCACCATCG
774 CGGAAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATC-GGGGCACCATCG
* * ** ** * *
17541078 CCGGAGCATCGTCGGAGAACCTGACCGACGATATTGGGGTTCCGGCGATCCGGGGGGCCGAGGGG
838 TCGAAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC--GGGG
*
17541143 GGG
901 GGT
* *
17541146 GTGCGCACATGATGTGTGATGGGTGCCGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCA
1 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCA
* * *
17541211 AACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTTCCAGTAGCCA
66 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* * *
17541276 TTAAAGTTTCTGAAATGGGGACACTTTTTTCAAAAGGTCACAAAATGTTGTACACTTCGAGTTTT
131 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * * *
17541341 TAGCTGAATTTTTTTGTGCATACCAAAAAAAATACAAGGTTCACGTCTACCAAGTTTGGTGCCAA
196 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * * **
17541406 AACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCAAGAAAAATA
261 AACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATA
*
17541471 AAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
326 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
** *
17541536 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAC
391 AGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
17541601 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGCT
456 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGCT
* * * *
17541666 AGTTTTGCCGGTTGGCTTAGGCATACGGAGTTCATTCCCTGTCTAAGATCAGACCAGACCGAGGG
521 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGG
* * * * *
17541731 TTACGGCAGCAGGATCGGCAGCACGTAGAGAAGGACCCGGCCGATCCCCGGCTTGCGCATCCCAC
586 TTGCGGCAGCAGGATCGGCAGCACGCAGAGAGGGACCCGGCCGATCCTCGGCTTGCGCATCCCGC
* * *
17541796 CCCTCTGGCCGGTTGAGCGCCCGCACTCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
651 CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
* * * * *
17541861 CCCAGTCTAAGCGTACGAAGTTCATTTCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGAAGC
716 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGAAGC
* * * * *
17541926 ACATGCTGGGCTCGAGCATCTGCTGGTGCCATATTTTTCTTCTTCGGGGCACCATCGTCGGAGCA
781 ACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGAAGCA
* * ** *
17541991 TCACCGGAGAACCTGACCGGCGGCATTGGGGTTTCGGTGATCGGGGGAGCCGAGGGGGGT
846 TCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC--GGGGGGT
* * * *
17542051 GTGCGCACATGATGTGTGATGGGTGCTAGTACATAGCCATTATATTGGCCCCCTATCCCTCATCA
1 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCA
* * * * *
17542116 AACCTCAAAAACTCACA-CCCCTTAAAGACCATTTGAGATTTTACAGGTTTACTTCCAGTAGCCA
66 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* * *
17542180 TGAAAGTTTCTGAAATGGGGACACTTTTTTCAAAAGGTCACAAAA---TG-----TT---G----
131 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * *
17542230 T--C--------------CACGCCAACAAAAATTCAAGGATCATGTCTACCAAGTTTGGGGCCAA
196 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * * ** * * **
17542279 AACTACTTCTGAATAAATTTTAAAAAATCCTAAATCGTAAAAAGTTTTGAAAATCGTGAAAAATA
261 AACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATA
*
17542344 GAGAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
326 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* * * *
17542409 GGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACTTACCACCCCAT
391 AGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * * *
17542474 CGACCCACGGCTTGCGCATCCCGTCTCTCTGGCTGACGTAGTGCCCGTCTGCCCG--C-C-CGCT
456 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGCT
* * * * **
17542535 CATTTCGTTGGTTGGCTCAGGCATACGGAGTTCATTCCCAATCTAAGATTGGACCAGACCGAGGG
521 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGG
* * * * * * * * * *
17542600 TTGCAGTAGCAAGATCAGCAGCACACAGAGGGGGACCCAGTCGATCCCCGTCTTGCGCATCCCGC
586 TTGCGGCAGCAGGATCGGCAGCACGCAGAGAGGGACCCGGCCGATCCTCGGCTTGCGCATCCCGC
* * * * * * *
17542665 CCCTCTGGCTGGCTGACCGCTCGCACGCTTGTTTCATGGGTTGACTTAGGTAT-CCGAGTTCATT
651 CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
*
17542729 CCCAG--T----ATA--G-G---------A-TC----A---GACCGGACCGAGGGTTGC-GATAG
716 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGA-AG
* ** * *
17542767 CACATGCTGGGCTCGAGCATGTGCTGGTGCTGCATTTTTCTTCGTCCGGGCACCATCGTCGAAGC
780 CACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGAAGC
* ** * *
17542832 ATCGCCGGAGAACCTGACCGGTGGCATTGGCGTTCCGATGATC--GGGGGCCGGGGGGT
845 ATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGT
* *
17542889 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCA
1 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCA
* * *
17542954 AACCTGGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCAA
66 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
*
17543019 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTT
131 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * * * *
17543084 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAGGGATCCCGTCCACCAATTTTGGGGCTAA
196 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * ** *
17543149 AACTCCTTCCGAAAAAATTTAAAAAAATCTCGAACCATAAAAAGGTTT-GAAAATCGTGAAAAAT
261 AACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAA-GTTTCAAAAATCGTGAAAAAT
* * * * *
17543213 ATAAAACAAGTCGTCCTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTTTGAATTTAC
325 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * *
17543278 AAGACATAAAAATGACATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
390 AAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * * ** * * ***** ** * *
17543343 TCGATCCACGGCTTGCGCATCCCAT-TCACCGAGGCACCATCGCAAAAAGTTCACCTGCCCGC-C
455 TCGATCCACGGCTTGCGCATCCCGTCTCTCTG-GCCGGCGTAG-TGCCCGCCCGCCCGCCCGCTC
* * ** * * *
17543406 TGCTCATTTCGTCGTTTGGCTTAGGCATAC-GAGTTCATTCCCAGTCTAAGATTGGATCGGACTG
518 -GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCG
* ** * * * *
17543470 AGGGTTGTGGCAGCAGGATCGATAGCATGCAGAGGGGGACCCGACCGATCCTCAGCTTGCGCATC
582 AGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGAGGGACCCGGCCGATCCTCGGCTTGCGCATC
* * * * * *
17543535 CCGCCCCTCTGGCCTGCTGAGCGCCCGCACGCTTGTTTCCTGGGTTGACGTAGGCGTATGGAGTT
647 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* * * * *
17543600 CATTCCC-GTCTAAGCATGCAGAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTACGG
712 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGG
* * * ** * *
17543664 TAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCATCGG
777 AAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGA
** * * *
17543729 AGCATCGTCGGAGAACCTGACCGACAGCATTAGGGTTCCGACGATCGGGGGGGCC---GAG-
842 AGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGT
17543787 G-G-G-----G--GT--G-T--GTGCTGGTACTTGG-CACTTATATTGGCCCCCTATCCCTCATC
1 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCA-TTATATTGGCCCCCTATCCCTCATC
* *
17543837 AAACCTCGAGAACTCACACCCACTTAAGGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
65 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* *
17543902 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTTGAGTTT
130 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* *
17543967 TTGGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
195 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * * * * *
17544032 AAAATACTTCCAAAAAAATTTAAAAAAATCACGAACTGCAAAAAGTTTCAAAAATCATGAAAAAT
260 AAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAAT
* *
17544097 AGAAAATGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
325 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* **
17544162 AAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGTGTAAACCCACCTACCACCCTA
390 AAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * *
17544227 TCGATCCACGGCTTGCGCATCCCGTATCTCTGGCCGGCGTAGTGCCCGCCCGCCCG---TC-CAC
455 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGC
* * ** *
17544288 TCGTTTCATCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGG
520 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGG
* * ** ** * *
17544353 ATTGCGGCAGTAGGATCGATAGCACATAGAG-GGGTACCCAGCCGATCCTCGGCTTACGCATCCC
585 GTTGCGGCAGCAGGATCGGCAGCACGCAGAGAGGG-ACCCGGCCGATCCTCGGCTTGCGCATCCC
* * * * *
17544417 GCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCATTTCGTAGTTTGACTGAGGCATACGGAGTTCA
649 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
** * *
17544482 TTCCCAGTCTAAGCATGTGGAGTTCATTCCCAGTCCAAGATCAGATCGGATCAGACCGAGGGTTG
714 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT-C----TAAGATCGGACCAGACCGAGGGTTG
* * * * ** * **
17544547 CGGTAGCACATGCTGGGCTTGGTCATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCGTTAT
774 CGGAAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGT
* ** * * ** *
17544612 CGGAGCATCATAGGAGAACCTGACTGGCAACATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGT
839 CGAAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGT
* *
17544677 GTGCGCACATGATGTGCGATGGGTGTTGGTACTTGG-CACTTAGATTGG-CCCCTATCCCTCATC
1 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCA-TTATATTGGCCCCCTATCCCTCATC
* *
17544740 AAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTG-TCACCAGTAGC
65 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT-GCCAGTAGC
* * *
17544804 CATTAAAGTGTTTAAAATGGGGACACTTTTTTCAAATGCTCACAAAATCTTGTACACTTCGAGTT
129 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * * * *
17544869 TCTAGCTGAATTTTTTCGTGCATGCCAAGAAAAATACAACGATCACGTCTACCAAGTTTGGGACC
194 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * *
17544934 AAAACTCCTTCCAAAAAAATTTTTAAAAAATCCCGAATCGTAAAAAGTTTCAAAAATCATGAAAA
259 AAAACTCCTTCCGAAAAAA-TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAA
* * *
17544999 ATAGAAAACGAGTCGTCTTGCTATGAAACTTCATGTGAAGGCTTAAGGCACCATTGTATGAATTT
323 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* ** * * *
17545064 ACAAGCCATAAAAATGGCATTGACATGCAGAAATATGAAGATGTGCCTAAGCCCACCTAGCACCT
388 ACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * * *
17545129 TATCGATCCACGGCTTTCGCATCCCGTCTGTCTGCCCGGCGTAGTGCCCGCCC-ACC-CTC-C-C
453 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTC
* ** *
17545190 GCTCGTTTCATCGGTTACCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA
518 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA
* * * ** * * * *
17545255 GGGTTGTGGTAGCAGAATCGATAGCATGTAGAGGGGGACCC-ACTCGATCCTCGGCTTGCGCATC
583 GGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGAGGGACCCGGC-CGATCCTCGGCTTGCGCATC
* * **
17545319 CCGCCTCTCTGGCTGGCTGAGCGCCCGCACGCTTATTTCGTGGGTTGACTTAGGCATACGGAGTT
647 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
** * ** *
17545384 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGTTCGGACTAAGGGTTG-TG
712 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGG
* * * ** *
17545448 ACAGCACATACTGGGCTCGGGCATGTGCTGGTGCCGCATTTTACTTCGCCGGGGCACCATCGCCG
777 A-AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCG
* ** * * * ** *
17545513 GAGCATCGTCGAAGAACCTGACCGACGTCATTGGGGTTCTGGTGATCGGGGGGGCCAGGGGGT
841 AAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGT
* * *
17545576 GTGCGCACATGATGTGGGATGGGTGCTGGTACTTGGCCCTTGTATTGGCCCCCTATCCCTCATCA
1 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCA
17545641 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
66 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
*
17545706 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATGTTGTACACTTCGAGTTTT
131 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * * *
17545771 TAGCTGAATTTTTTTTTACATGCCAATAAAAATAC-AGGTATCACGTCTACCAAGTTTCGGGCCA
196 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG-ATCACGTCTACCAAGTTTGGGGCCA
* * * **
17545835 AAACTCCTTCCGAAAAAATTTTAACAAATCCCGAACCACAAAATGTTTTGAAAATCGTGAAAAAT
260 AAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAAT
* * *
17545900 AAAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTAC
325 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * * *
17545965 AAGCCATAAAAGTGGCATTGGCATAAAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
390 AAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * * * *
17546030 TCGATCCATGGCTTGCGCATACC-T-AC-C--ACC--C--A-T--CTGCCCG-CC-CAC-CT-GC
455 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGC
** *
17546079 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGG
520 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGG
* * * * * ** *
17546144 GTTGCAGCAGCAAGATTGGCGGCACACAGAGAGGGACCCGATCGATCCTCGGCTTGCACATCCCG
585 GTTGCGGCAGCAGGATCGGCAGCACGCAGAGAGGGACCCGGCCGATCCTCGGCTTGCGCATCCCG
*
17546209 CCCCTCTGGCCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
650 CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
** * * *
17546274 TCCCAGTCTAAGCATACGGAGTTCATTGTCAGTCTAAGATCGGACAAGACCAAGGGTTGCGGCAG
715 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGAAG
* * *
17546339 CACATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGAAGC
780 CACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGAAGC
* * *
17546404 ATCACCGGAGAACCTGACCGGCGGCACT-GGGTTCCGACGAGCGGGGGGGCCGGGGGGT
845 ATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGT
* * * *
17546462 GTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGACCCCTTATCCCTCATCA
1 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCA
* * *
17546527 AACCTCGGGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCAA
66 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* * * * **
17546592 TTAAAGTGTCCGGAATGAGGACACTTTTTTCAAATGGTCACAAAATCATGTACACTTTAAGTTTT
131 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * *
17546657 TGGCTGAATTTTTTTGTGCTAGTG--AATAAAAATACAAGGATCCCGTCTACCAAGTTTGGGGCC
196 TAGCTGAATTTTTTTGTGC-A-TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * **
17546720 AAAGCTCCTTCCAAAAAAATTTTAAGAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAA
259 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAA
*
17546785 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTA
324 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* * *
17546850 CAAGCCATAAAAATAGCATTGGCACACAGAAATATGAAGATCTACCTAAACCCACCTACCACCCT
389 CAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * * * *
17546915 ATCGATCCACGGCTTGCGCATCCCGTCCCTCTGGCCGGTGTAGTGCCCACCCGCCCGTCCGCCCA
454 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCG
* * *
17546980 CTCGTTTTGTC-GTTGGCTTAGGTATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAG
519 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG
* * * * * * * *
17547044 GG-TGAGGGTAGTAGGATCGGTAGCACCCAGAGCA-GGACTCGGTCGATCCTCGGCTTACGCATC
584 GGTTG-CGGCAGCAGGATCGGCAGCACGCAGAG-AGGGACCCGGCCGATCCTCGGCTTGCGCATC
* ** * *
17547107 CCACCCCTCTGAACAGCTGAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
647 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
*
17547172 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGG
712 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGG
* * *
17547237 CAGCACATCCTGGGC-CTGGGCATGTGCTGGTGCCACATTTTTCTTCATCGAGGCACCATCGTCG
777 AAGCACATGCTGGGCTC-GGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCG
* ** * * * *
17547301 AAGCATCACCGGAGAACTTGTTCGGCGGCACTGGGGTTACGGCGATCAGGGGGCCGG-CGGGGGG
841 AAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGG--GGCCGGGGGG
17547365 T
903 T
* *
17547366 GTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
1 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCA
* * * *
17547431 AACCTCGAGAACTCACACCGCCTTAAAGAGCATTTGTGATTTTACAGGTTTGCTACCAGTAGCAA
66 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* *
17547496 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTAACAAAATCTTGTACACTTCGATTTTT
131 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * * *
17547561 TAGCTGAATTCTTTTGTGCATGCCACCAAAAATACAAAGATCACATCTACCAAGTTTGGGGCCAA
196 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
** * * * *
17547626 AACTCCTTTTGAAAAAATTTGAAAAAAT-CCGAAATCGTAAAAAGTTTCAAAAATCGTGACAAAT
261 AACTCCTTCCGAAAAAATTTTAAAAAATCCCG-AACCGCAAAAAGTTTCAAAAATCGTGAAAAAT
* * * * * *
17547690 AGAAAACGACTCATCTTGCCA-AAAACTTCACGTGAAGGCTTAAGTGACCGTTGTATGAATCTAC
325 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * *
17547754 AAGCCGTAAAAATGGCATTGGCACAAAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTA
390 AAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * * *
17547819 TCGATCCACGGCTTGCGCAGCCCATCTCTCTGGTCGGCATAGTGCCCGTCCGCCCGCCCGC-CTG
455 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTC-G
** * * *
17547883 CTCGTTTCGTTAGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGATCGAG
519 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG
* * * * * * * * *
17547948 GGTTACAGTAGTAGGATCGACAACA-GACAGA-ACGGGACCTGACCCATCCTCGGCTTGCGCATC
584 GGTTGCGGCAGCAGGATCGGCAGCACG-CAGAGA-GGGACCCGGCCGATCCTCGGCTTGCGCATC
* * * *
17548011 CCGCCCCTCTGGACGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTAACTTAGGGATACGGAGTT
647 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
17548076 CATT-CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGC-G
712 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGG
* * *
17548139 ATAGCACATGCTGGGCTCGGGCATGTGCTGGTG-CAGCATTTTGCTTCACCGGGGCACCATCGCC
777 A-AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCA-CATTTTTCTTCATCGGGGCACCATCGTC
* * *
17548203 GAAGCATCGCCGGAGAACCTGACCGACGGCACTT-GGGTTCCGACGATCAGGGGGGCCAGGGGGT
840 GAAGCATCACCGGAGAACCTGACCGACGGCA-TTGGGGTTCCGACGATCGGGGGGGCCGGGGGGT
*
17548267 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
1 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCA
*
17548332 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAA
66 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
*
17548397 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTT
131 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * * *
17548462 TAGCTGAATTTTTTTGTGCAAGCGAATAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAA
196 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * **
17548527 AGA-TCCTTCCAAAAAAATTTTAAAAAATCCAGAACCGCAAAAAGTTTTGAAAATCGTGAAAAAT
261 A-ACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAAT
* * * * *
17548591 AGAAAACGGGTCGTCTCGCCATGAAACTTCACGTGAAAGCTTAAGGGACTATTGTATGTATTTAC
325 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * *
17548656 AAGCCATAAAAATGGCGTTAGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTA
390 AAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * * ** *
17548721 TCGATCCACGGCTTGTGCATCCCGTCTCTCTAGCCGGCGTAGTGCCTGCCCACCCGTTCGCCCGC
455 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGC
* **
17548786 TCGTTTCGTC-GTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGG
520 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGG
* * * * * * ** *** *
17548850 GTTACGGCAGTAGGATCGACAGCATGCAGA-ATGAGTCTTGGTTAATCCCCGGCTTGCGCATCCC
585 GTTGCGGCAGCAGGATCGGCAGCACGCAGAGA-GGGACCCGGCCGATCCTCGGCTTGCGCATCCC
** * * * **
17548914 GCCCCTCTGAACGGCTGAGCGCTCGCATGCTCGTTTCATGGGTTGACTTAGGCATATAGAGTTCA
649 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
** * * *
17548979 TTCCCAGTCTAAGCATTTGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGTGTTAC-GAT
714 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGA-
* * *
17549043 AGCACATGCTGGGCTCGGGAATGTGCTGGTGCCATATTTTTCTTCACCGGGGCACCATCGTCGAA
778 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGAA
* * *
17549108 GCATCACCGGAGAACCTGATC-AGTGGCACTGGGGTTCCGACGATCGGGGGGGCCGGCTGGGGGT
843 GCATCACCGGAGAACCTGACCGA-CGGCATTGGGGTTCCGACGATCGGGGGGGCC-G--GGGGGT
* * * *
17549172 GTGCGCACATGATGTGTGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCATCATCA
1 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCA
* *
17549237 AACCTCGAGAAATCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAA
66 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* * * *
17549302 TTAAAGTGTCTCAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTTGAGTTTT
131 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
*
17549367 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAA
196 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * * *
17549432 AAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGCAAAATA
261 AACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATA
*
17549497 GAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
326 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* * *
17549562 AGCCGTAAAAATGTCATTGGCACACAGAAAGATGAAGATGTGCCTAAACCCACCTACCACCCTAT
391 AGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * * * *
17549627 CGATCCACGGCTTGCGCATCCCATCTCTCTGGTCAGCGTAGTGCCTGTCCACCCGCCCGC-CTGC
456 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTC-GC
* * * * *
17549691 TCGTTTCGTCGATTGGCTTAGGCATATGGAGTTCATTCCCAATCTAAGATCGGACCAAACCGAGG
520 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGG
* * * * * * * * * *
17549756 GTTGCGGTAGCAGGATCGGTAGCACGTA-ATGGGGGACCTGACCAATCCTCGACTTGTGCATCAC
585 GTTGCGGCAGCAGGATCGGCAGCACGCAGA-GAGGGACCCGGCCGATCCTCGGCTTGCGCATCCC
* *
17549820 GCCCATCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
649 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
**
17549885 TTCCCAGTCTAAGCATGTGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCAGACCGAGGGTTG
714 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-C----CAGACCGAGGGTTG
* * * * *** * * **
17549950 CGGTAGCACATGCTGGGCTTGGTCATGTGCTGGTGCCGCATTTTTCTTTGCCGGGGCAACGTTAT
774 CGGAAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGT
* ** * * * * *
17550015 CGGAGCATCGTCAGAGAACCTGACCGGCAGCATTGGGGTTCTGACGATCAGGGGGGCCGGGGGGT
839 CGAAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGT
* * *
17550080 GTGCGCACATGATGTGCGATGGGTGCTGATACTTGG-CACTTAGATTGGCCCCCTATCCCTCAGC
1 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCA-TTATATTGGCCCCCTATCCCTCATC
* * * * *
17550144 AAACCTCGAGAACTCACACCCCTTTAAAAAACATTTGAGATTTTACAGGTTTGCCGCTAGTAGCC
65 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
17550209 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
130 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
*
17550274 TTAGC-GAAATTTTTTTGTGCATGCCAACAGAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
195 TTAGCTG-AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * * *
17550338 AAAACTCCTTCCGAAAAAATTTTAAAAAATCTCAAACCGCAAAAGGTTTTAAAAATCATGAAAAA
259 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAA
** *
17550403 TAGAAAGTGAGTCGTCTTCCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
324 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* * * *
17550468 CAAGCCGTAAAAATGGCATTGGCACACAGAAATATAACAAGATGTACGTAAACCCACCTACCACC
389 CAAGCCATAAAAATGGCATTGGCACACAGAAATAT--GAAGATGTGCCTAAACCCACCTACCACC
* * * * * *
17550533 CTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGACGTAGTGCCTGTCCGTCCACCCG-T
452 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCT
* * *** *
17550597 CTGCTCGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTAATAGTCTAAGATCAGAACAGACC
517 C-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACC
* * * * * * * * * * *
17550662 AAGGGTTGTGGTAGTAGGATTGGCAGCACACAGAGTGGGACCCGGCTGATTCTCGACTTACGCAT
581 GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGAGGGACCCGGCCGATCCTCGGCTTGCGCAT
* * *
17550727 CCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGACATACGGAGT
646 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* * ** * *
17550792 TTATTCCCAGTCTAAGCATACGGAGTTCATTCTCAGTCTAAGATCGGACTGGGCCGA-GGTTGTG
711 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCG
* * * **
17550856 GTAGCACATGCTGGGCTCGGACATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCACCG
776 GAAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCG
*
17550921 AAGCATCACCGGAGAACCTGACCGACGGGATTG
841 AAGCATCACCGGAGAACCTGACCGACGGCATTG
17550954 CTGCCAGTAG
Statistics
Matches: 8557, Mismatches: 1058, Indels: 387
0.86 0.11 0.04
Matches are distributed among these distances:
838 80 0.01
839 85 0.01
840 6 0.00
841 2 0.00
842 117 0.01
845 1 0.00
847 2 0.00
849 2 0.00
850 1 0.00
854 1 0.00
856 1 0.00
859 1 0.00
862 2 0.00
866 1 0.00
868 15 0.00
869 159 0.02
870 234 0.03
871 10 0.00
873 265 0.03
874 132 0.02
875 38 0.00
876 1 0.00
879 27 0.00
880 148 0.02
881 26 0.00
882 2 0.00
883 11 0.00
884 417 0.05
885 4 0.00
886 589 0.07
887 320 0.04
888 5 0.00
889 7 0.00
890 2 0.00
891 4 0.00
892 3 0.00
893 3 0.00
894 2 0.00
895 1 0.00
896 5 0.00
897 3 0.00
898 8 0.00
899 348 0.04
900 327 0.04
901 784 0.09
902 368 0.04
903 541 0.06
904 1269 0.15
905 1187 0.14
906 193 0.02
907 3 0.00
908 392 0.05
909 1 0.00
910 290 0.03
911 110 0.01
912 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (903 bp):
GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCA
AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
AACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATA
GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
AGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGCT
CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGG
TTGCGGCAGCAGGATCGGCAGCACGCAGAGAGGGACCCGGCCGATCCTCGGCTTGCGCATCCCGC
CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGAAGC
ACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGAAGCA
TCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGT
Found at i:17545408 original size:26 final size:26
Alignment explanation
Indices: 17545372--17545424 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17545362 GTTGACTTAG
17545372 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17545398 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17545424 G
1 G
17545425 ATCGGTTCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17546295 original size:26 final size:26
Alignment explanation
Indices: 17546259--17546311 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17546249 GTTGACTTAG
17546259 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
**
17546285 GCATACGGAGTTCATTGTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17546311 G
1 G
17546312 ATCGGACAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17547189 original size:26 final size:26
Alignment explanation
Indices: 17547160--17547212 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17547150 GTTGACTTAG
17547160 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17547186 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17547212 G
1 G
17547213 ATCAGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17548100 original size:25 final size:26
Alignment explanation
Indices: 17548066--17548115 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 26
17548056 TAACTTAGGG
17548066 ATACGGAGTTCATT-CCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
17548091 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
17548116 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 14 0.58
26 10 0.42
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:17550811 original size:26 final size:26
Alignment explanation
Indices: 17550782--17550833 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
17550772 TTGACTTAGA
*
17550782 CATACGGAGTTTATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
*
17550808 CATACGGAGTTCATTCTCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
17550834 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:17552469 original size:26 final size:26
Alignment explanation
Indices: 17552433--17552485 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17552423 GTTGACTTAG
*
17552433 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
17552459 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
17552485 G
1 G
17552486 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:17553358 original size:26 final size:26
Alignment explanation
Indices: 17553328--17553377 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
17553318 GTTCACTTAG
17553328 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17553354 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
17553378 TAGATCGGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17554264 original size:26 final size:26
Alignment explanation
Indices: 17554228--17554280 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17554218 GTTGACTTAG
17554228 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17554254 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17554280 G
1 G
17554281 ATCGGATCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17554548 original size:901 final size:902
Alignment explanation
Indices: 17550951--17555026 Score: 5309
Period size: 901 Copynumber: 4.5 Consensus size: 902
17550941 ACCGACGGGA
17550951 TTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
1 TTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * * *
17551016 GTACACTTCAAGTTTTTAGCTTAATTTTTTTTGTACATGCCAAAAAAAATACAAGGATTACGTCT
66 GTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCT
* *
17551081 ACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTC
130 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTC
* *
17551146 AAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAAGCTTAAGGGAC
195 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* * *
17551211 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAGTATGAAGATGTGCCTAAA
260 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTACCTAAA
* * * *
17551276 CCCACCAACCACCCTATCGATCCACGGCTTACCCATCCCGTCTCTCTGGCCGACGTAGTGCCCGT
325 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGC
* *
17551341 CTGCCCGCCCGCCCACTCATTTCGTCGGTTGGCTTAGGCATAC-GAGGTTCATTCCCAGTCTAAG
390 CCG-CCGCCCGCCC-CTCGTTTCGTCGGTTGGCTTAGGCATACGGA-GTTCATTCCCAGTCTAAG
*** * * * * * * * * * * * *
17551405 ATCAAAC-CAAATCAAGGGTTGTGGTAGCAAGATCGGTAGCACGTAGAGGGGGA-CCTGACCCAT
452 ATTGGACTGAACT-GAGGGTTGCGGCAGCAGGATCAGCAACACGCAGAGGGGGACCCAG-CCGAT
* * ** *
17551468 CCTTGGCTTGCGCATCCCGCCCCTCTGGACAACTGAGCAG-CCGCACGCTCGTTTCGTGGGTTGA
515 CCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCAGCCCGCACGCTCGTTTCATGGGTTGA
* *
17551532 CTTAGGCATTCGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTTCCAATCTAAGATCGGAT
580 CTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGAT
* * *
17551597 CAAACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTC
645 CGAACC--A---AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
* * * * *
17551662 TTC-GCTGGGGCACCATC-GTCAGAGCATCGTCGGAGAACCTGACCGGCAGCATTGGGGTTCCGG
705 TTCATC-GGGGCACCATCACT-AGAGCATCCTCGGAGAACCTGACCGGCGGCATTGGGGTTCCAG
* * * * * * * *
17551725 CGATCGGGGGGTC-GGGGGGTGTGCGCACGTGATGTGTGATTGGTGCTGGCACTTGGCCGTTATG
768 AGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* * *
17551789 TTGGCCCCCTAT-CTGTCA-CGAATCCTCCAGAACTCACACCCACTTAAAGAGCATTTGAGATTT
833 TTGGCCCCCTATCCT-TCATC-AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
17551852 TACAGGT
896 TACAGGT
* * * *
17551859 TTGCTGCCAATAGCTATTAAAGTGTATGAAATGGGGACACTTTTTTCAAATGGTCAGAAAATCTT
1 TTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * * *
17551924 GTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATCCCAACAAAAATACACGGATCACGTCTA
66 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTA
* * * *
17551989 CCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTTAAAAAATCCCATACCG-TAAAAGATTC
131 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA-TTTTAAAAAATCCCAAACCGCAAAAAG-TTT
* *
17552053 CAAAAATTGTGAAAAATAGTAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
194 CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* * * *
17552118 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTAGAATGCAGAAATATGAAGATGTATCTAA
259 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTACCTAA
* * * *
17552183 ACCCACCCACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCCCTGGCCGGCGTAGT----G
324 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG
* *
17552244 --C-CCGCCCG---CTCGTTTCGTCAGTTGGCTTAGGCGTACGGAGTTCATTCCCAGTCTAAGAT
389 CCCGCCGCCCGCCCCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * *
17552303 TGGACTGGACTGAGGGTTGCGGTAACAGGATC-G-ATAGTACGTAGAGGGGGACCCTA-CCGATC
454 TGGACTGAACTGAGGGTTGCGGCAGCAGGATCAGCA-A-CACGCAGAGGGGGACCC-AGCCGATC
* * * * * *
17552365 CCTGGCCTGCGCATCCCGACCCTCTTGCCGGTTGAGCA-CCCGCACGCTCATTTCGTGGGTTGAC
516 CCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCAGCCCGCACGCTCGTTTCATGGGTTGAC
*
17552429 TTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATCGGA-C
581 TTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGATC
** * * * * * * * *
17552493 TGGGCCGAGGGTTGTGGCAGCACATGCCGAGCTCGGGCATGTGCTGCTGCCACTTTTTTCTTCGT
646 -GAACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCAT
* * * * * *
17552558 CGAGGCACCATCGCTGGAGCATCAC-CGGAGAACCTGACCGGCGACATTGGCGTTCCAGCGATCG
710 CGGGGCACCATCACTAGAGCATC-CTCGGAGAACCTGACCGGCGGCATTGGGGTTCCAGAGATC-
* * * *
17552622 GGGGGGCCGGGGGGGGTGTGCGCACGTGATGTGTGATGGTTGCTGGTACTTGGCCCTTATATTAG
773 GGGGGGCC-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* * *
17552687 -CCCCTATCCCTCATCAAACCTTC-AAAACTCACACCCCCTTAAAGAGCATTTGATATTTTACAG
837 CCCCCTATCCTTCATCAAACC-TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
17552750 GT
901 GT
*
17552752 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
1 TTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * *
17552817 GTACACTTCGAGTTTTTAGCTTAATTTTTTTGTGCATGCCAAAAATAATACAAGGATCGCGTCTA
66 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTA
* * * * **
17552882 CTAATTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTG
131 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCA
** *
17552947 AAAATCGTGAAAAATAGAAAACGAGTCACCTTGCCATGAAACTTCACGTGAA-GCTGAAGGGACC
196 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * * * *
17553011 ATTGTATGAATTTACAAGCCACAAAAATTGCTTTGGCA-CACTGAAATATGAAGATGTACCTAAA
261 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGA-AGAAATATGAAGATGTACCTAAA
*
17553075 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCC-AGCGTAGTGCCCG
325 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCG
* * * *
17553139 --C-CCGCCTG---CTTGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGAT
389 CCCGCCGCCCGCCCCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
** * * * * * *
17553198 CAGACCGGACTGAGGGTTGCAGCAGCAGGATCAGCAGCACGCAAAGGGGGACCC-GACTGATCCC
454 TGGACTGAACTGAGGGTTGCGGCAGCAGGATCAGCAACACGCAGAGGGGGACCCAG-CCGATCCC
**** * * *
17553262 CAATTTGCGCATCCCGCCCCTCTTGCCGGCTGAGC-GCCCGCACGCTCGTTTCATGAGTTCACTT
518 TGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCAGCCCGCACGCTCGTTTCATGGGTTGACTT
* * * *
17553326 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTTAGATCGGATCGG
583 AGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGATCGA
** * * * * *
17553391 GTCGA-GGTTGTGGCAGCACATGCTGGGCTCGGGCAAGTGCTGGTGCCTCATTTTTCTTCACCGG
648 ACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGG
* * * * *
17553455 GGCACCATCACGT-GAGCATCGTCGAAAAACCTGACCGGCGGCATTGGGGTTCC-GACAATTGGG
713 GGCACCATCAC-TAGAGCATCCTCGGAGAACCTGACCGGCGGCATTGGGGTTCCAGA-GATCGGG
* *
17553518 GGGCCGGGGGGGCGTAG-GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGTCCC
776 GGGCCGGGGGGGTGT-GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
*
17553582 CCTATCCTTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGCTTTTACAGGT
840 CCTATCCTTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
17553645 TTGCTGCCAGTAGCAATTAAAGTGTCTGAAAT-GGGACACTTTTTTCAAATGGTCACAAAATCTT
1 TTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
*
17553709 GTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATG-CAAACAAAAATACAAGGATCACGTCT
66 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA-AAAAATACAAGGATCACGTCT
* * *
17553773 ACCACGTTTGGGGCCAGAACTCCTTCCGAAAAAATTTTAAGAAAT-CCAGAACCGCAAAAAGTTT
130 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCA-AACCGCAAAAAGTTT
**
17553837 TGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
194 CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* **
17553902 CCATTGTATCAATTTACAAGCCATAAAAATGGCATTGGTGTGAAGAAATATGAAGATGTACCTAA
259 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTACCTAA
* * * *
17553967 ACCCACCTGCCGCCCTAACGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGACGTAGTGCCCG
324 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG
* * * *
17554032 CCTGCCATCCCGCCCCTCGTTTCGTCGGTTGGCTTAGGTATACGGAGTTCATTCCCAATCTAAGA
389 CCCGCC-GCCCGCCCCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * *
17554097 TTGGATTGAACTGAGGGTTGCGGCAGCAGGATCAGCAACACACAGAGGGGGACCCAGTCGATCCC
453 TTGGACTGAACTGAGGGTTGCGGCAGCAGGATCAGCAACACGCAGAGGGGGACCCAGCCGATCCC
* * * * * *
17554162 TGGCTTGCGCATCTCGCCCCTCTGGTCGGTTGAG-AGCTCGCACACTCGTTTTATGGGTTGACTT
518 TGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCAGCCCGCACGCTCGTTTCATGGGTTGACTT
* *
17554226 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGA
583 AGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGATCGA
* * *
17554291 ACCAAGGGTTGCAGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTATTCTTCATCGG
648 ACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGG
* *
17554356 GGCACCATCACTAGATCAACCTCGGAGAACCTGACCGGCGGCATTGGGGTTCCAGAGATCGGCGG
713 GGCACCATCACTAGAGCATCCTCGGAGAACCTGACCGGCGGCATTGGGGTTCCAGAGATCGG-GG
* *
17554421 GGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTTGAACTTGGCCCTTATATTGGCCCCC
777 GGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
*
17554485 TATCTTTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
842 TATCCTTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* * *
17554546 TTGCTGCCAATAGCCATTAAAGTGTCTGAAAT-GTGACACTTTTTTCAAATGGTCACAAAATCTT
1 TTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
*
17554610 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAGGTCTA
66 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTA
* * * * *
17554675 CCAAGTGTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAACTCCCGAACCGTACAAAGTTTCA
131 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCA
* * *
17554740 AAAATCATGAAAAATACAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
196 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * * * *
17554805 ATTGCATGAATTTACAAGCC-TCTAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAA
261 ATTGTATGAATTTACAAGCCAT-AAAAATGGCATTGGCATGAAGAAATATGAAGATGTACCTAAA
* * * *
17554869 CCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCTGACATAGTGCCCAC
325 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGC
* * * *
17554934 CCGCCCGCACACCCGCTCGTTTGGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTTTAAGA
390 CCG-CCGCCCGCCC-CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * **
17554999 TTGAACTAAACCAAGGGTTGCGGCAGCA
453 TTGGACTGAACTGAGGGTTGCGGCAGCA
17555027 CATGCTGGGC
Statistics
Matches: 2778, Mismatches: 328, Indels: 130
0.86 0.10 0.04
Matches are distributed among these distances:
891 224 0.08
892 320 0.12
893 427 0.15
894 152 0.05
895 219 0.08
896 202 0.07
897 10 0.00
900 222 0.08
901 567 0.20
902 85 0.03
904 1 0.00
907 71 0.03
908 278 0.10
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (902 bp):
TTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTA
CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCA
AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTACCTAAAC
CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC
CGCCGCCCGCCCCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTG
GACTGAACTGAGGGTTGCGGCAGCAGGATCAGCAACACGCAGAGGGGGACCCAGCCGATCCCTGG
CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCAGCCCGCACGCTCGTTTCATGGGTTGACTTAGG
CATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGATCGAACC
AAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGC
ACCATCACTAGAGCATCCTCGGAGAACCTGACCGGCGGCATTGGGGTTCCAGAGATCGGGGGGCC
GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
CTTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
Found at i:17557122 original size:902 final size:891
Alignment explanation
Indices: 17554971--17558081 Score: 3989
Period size: 902 Copynumber: 3.5 Consensus size: 891
17554961 GTTGGCTTAG
* * * * * * * *
17554971 GCATACGGAGTTCATTCCCAGTTTAAGATTGAACTAAACCAAGGGTTGCGGCAGCACATGCTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
* * * * * *
17555036 CTCGGGCATGTACTGGTGCCGCATTCTTGTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGA
66 CTCGAGCATGTGCTGGTGCCTCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATC-TCGGAGA
* * * *
17555101 ACCTGATCGGCGGCATTGGGGTTCCGGTGATCGGGGGTGCC----GGG-G-G-G-----GATGTA
130 ACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCAGGGGGGTGTGCGCAAATGATGTG
17555154 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
17555219 ACCCCCTTACAGAGCACTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTATAG-AA
260 ACCCCCTTAAAGAGCACTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAGAAA
* *
17555283 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATTTTTTT
*
17555348 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG-TTGGAGGCCAAGACTCCTTCCGAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG-GGCCAAAACTCCTTCCGAAA
* * ** *
17555412 AAATTTTTAAAAAATCCCCAACCGCAAAAGGTTTCAAAAATCATGAAAAATAGAAAATAAGTCGT
454 AAA-CTTTAAAAAAT-CCCAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCAT
* * * *
17555477 CTTCCCACGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAGGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
17555542 GCATTGGCACATAGAAATTTTAAGATGTACCTAAACCCACCTACCACCCTATTGATCCACGGCTT
582 GCATTGGCACATAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
17555607 GCGCATCACC-TCTCTGGCCGGCGTGTGCCTC-CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTG
647 GCGCATC-CCTTCTCTGGCCGGTGTGTGCC-CGCCCG-CCGCCCGCTCGTTTCGTCGGTTGGCTT
*** * * * *
17555670 AGGCATACGGAGTTCATTTGTAGTCTAAGATCAGATCGAACTGAGGGTTGCGGCAGCAGGATCAG
709 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAAGATC-G
* * * * * * *
17555735 CAGCACGTAGATGGGGACCTGACCAATCCTCGGCTTGCGCATCCCGCCCGTCTGACCTGCTAAGC
773 CAGCAC-CAGA-CGGGACCCGA-CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCTGCTAAGC
* * * *
17555800 ACCCACACGCTCGTTTCGTGTGTTGACTTAGGCAGACGGAGTTCATTCCCAGTCTAA
835 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* **
17555857 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
* * * * * * *
17555922 CTTGGGCATGTG-TGGTGCCACATTTTTCTTCACCGAGGCACCATCATCGGAGCATCACCCGG-G
66 CTCGAGCATGTGCTGGTGCCTCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCAT--CTCGGAG
* * * *
17555985 AACTTGACCGGCAGCATTGGGGTTCCGATGATCGGGTGGGCCGAGAGGGGGGGTGTGCGCACATG
129 AACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCC---A-GGGGGGTGTGCGCAAATG
*
17556050 ATGTGCGGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
190 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
*
17556115 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
255 CTCACACCCCCTTAAAGAGCACTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* *
17556180 -GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTGGAGTTTTTAACTGAATT
320 AGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATT
* * * * ** *
17556244 TTTTTTTGCATGCCATA-AAATATACGAGGATCATGTCTACCTGGTTTGGGGCAAAAACTCCTTC
385 TTTTTGTGCATGCCA-ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* *
17556308 CGAAAAAA-TTTAAAAAAATCCCGAACCGTAAAAATTTTCAAAAATCATGAAAAATAGAAAACGA
449 CGAAAAAACTTT-AAAAAATCCC-AACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
* *
17556372 GTCATCTTGCCATGAAACTTCTCGTGAAGGCTTACGGGACCATTGTATGAATTTACAAGCCATAA
512 GTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* *
17556437 AAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAAC
577 AAATGGCATTGGCACATAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCAC
* *
17556502 GGCTTGCGCATCCCGTGTCTCTAGCCGGTGTAGTGCCCGCCCGACCGCCCACTCGTTTCGTCGGT
642 GGCTTGCGCATCCC-T-TCTCTGGCCGGTGT-GTGCCCGCCCG-CCGCCCGCTCGTTTCGTCGGT
* *
17556567 TGGCTTAGGCATACAGAGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAA
703 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAA
* * * *
17556632 GTTCGCTAGCACACAGACGAGGACCCGAACGATCCCCGCCTTGCGCATCCCGCCCCTTTGGCCTA
768 GATCGC-AGCAC-CAGACG-GGACCCG-ACGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCTG
* * * *
17556697 CTGAGCGTCGGCACGCT-GATTTCGTGGGTTGACTTAGGCATACGGGGTTCATTCCCAGTCTAA
829 CTAAGCGCCCGCACGCTCG-TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * *
17556760 GCAGATGGAGTTCATTCCCAATCTAAGATCGGATCGGACCGAAGGTTACGGTTGTACATGCTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
*
17556825 CTCGAGCATGTGCTGGTGCCTCATTTATT-TTCACCCGGGGCACCATCGTCGGAGCATCGTCGGA
66 CTCGAGCATGTGCTGGTGCCTCATTT-TTCTTC-GCCGGGGCACCATCGTCGGAGCATC-TCGGA
* *
17556889 GAACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGGGCCGAGGGGGGTGTGCGCAAATGAT
128 GAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCC-AGGGGGGTGTGCGCAAATGAT
17556954 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
17557019 CACACGCCCTTAAAGAGCACTTGAGGTTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTAG
257 CACACCCCCTTAAAGAGCACTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAG
*
17557084 -AATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATTTT
322 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATTTT
*
17557148 TTTGTGCATGCCAACAAAAATACAAGAATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
387 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* * *
17557213 AAAAACTTTAAAAAATCTCAGACCGCAAAAAGTTTCCAAAATCGTGAAAAATAGAAAACGAGTCA
452 AAAAACTTTAAAAAATCCCA-ACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCA
*
17557278 TCTTGCCATGAAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAAT
516 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
***
17557343 GGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCT
581 GGCATTGGCACATAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
17557408 TGCGCATCTCATCTCTCTGGCCGACGCAGTGTCTGCCCGCCAGTTCGCCTGCCTGCTCGTTTCAT
646 TGCGCATC-CCT-TCTCTGG-C--CG--GTGTGTGCCCGCC----CGCC-GCCCGCTCGTTTCGT
* * * * * *
17557473 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTTTAAGAGT-GGACTGGATCGAGGGTTGTGGT
699 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TCAGACCGGACCGAGGGTTGCGGC
* * *
17557537 AGCAAGATCG--GCACC---C-GG---C--CGATCCCCGGCTTGTGCATCACGCCCCTCTGGCCG
763 AGCAAGATCGCAGCACCAGACGGGACCCGACGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCT
*
17557591 GCTTAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
828 GCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*** ** *
17557655 GCATACAAAGTTCATTCCCAGTCTAAGATCGGACCAGATTGAGGGTTGCAGTAGCACATGCTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
* * * *
17557720 TTCGAGCATGTGTTGGTGCCGT-ATTTTTCTTCGTCAGGGCACCA---T-----CA-C-CGGAGA
66 CTCGAGCATGTGCTGGTGCC-TCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCTCGGAGA
* * * * *
17557774 ACCTGACCGGCCGCATTGCGGTTCTGATGATC-GGGGGGCCCGGGGGGTGTGCGTAAATGATGTG
130 ACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCAGGGGGGTGTGCGCAAATGATGTG
**
17557838 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTAAAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
17557903 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC-CGAAA
260 ACCCCCTTAAAGAGCACTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAGAAA
* * * * *
17557967 TGGGGACACTTTTTTCATATGGTCACCAAATCTTGTACACTTCGATTTTTTAGCTGAATTATTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATTTTTTT
* *
17558032 GTGCATGGCAACAAAAATACAAGGATCACGTCTAGCAAGTTTGGGGCCAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
17558082 TGAAACTTCA
Statistics
Matches: 1955, Mismatches: 213, Indels: 119
0.85 0.09 0.05
Matches are distributed among these distances:
880 1 0.00
881 248 0.13
882 8 0.00
883 33 0.02
885 74 0.04
886 71 0.04
887 1 0.00
891 1 0.00
893 3 0.00
894 12 0.01
895 164 0.08
896 3 0.00
898 1 0.00
899 8 0.00
900 174 0.09
901 244 0.12
902 472 0.24
903 257 0.13
904 19 0.01
905 63 0.03
906 9 0.00
907 8 0.00
909 2 0.00
910 78 0.04
911 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (891 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
CTCGAGCATGTGCTGGTGCCTCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCTCGGAGAA
CCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCAGGGGGGTGTGCGCAAATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCACTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATTTTTTTG
TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
ACTTTAAAAAATCCCAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACATAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCTTCTCTGGCCGGTGTGTGCCCGCCCGCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAAGATCGCAGCACCA
GACGGGACCCGACGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCTGCTAAGCGCCCGCACGCT
CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:17559358 original size:26 final size:26
Alignment explanation
Indices: 17559321--17559373 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17559311 GTTGACTTAG
* *
17559321 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17559347 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17559373 G
1 G
17559374 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17559830 original size:904 final size:900
Alignment explanation
Indices: 17558079--17561823 Score: 4957
Period size: 904 Copynumber: 4.2 Consensus size: 900
17558069 AGTTTGGGGC
*
17558079 CAATGAAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
1 CAATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
17558144 TGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
66 TGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGC
* * * * *
17558209 ATCTCATCTCTCTGGCCGGCGTAG-TG-----C-CCACCCGCCCGCTTGTTTCGTCGGTTGGCTT
131 ATCCCGTCTCTCTGGCCGGCGTAGTTGCCACCCGCCGCCCGCCCGCTCGTTTCATCGGTTGGCTT
** * * * *
17558267 AGGCATGTGGAGTTCATTCCCAGTTTAAGATTGGACCGGACTGAGGGTTGTGGTAGCTA-GATCG
196 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGC-AGGATCG
** ** *
17558331 GTAGCACGTAGA--GGACTTGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAGT
260 ACAGCACGTAGAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGT
* * * ** * * *
17558394 GCCCAAACGCTCGTTTCATGGGTTCACTTAGGCATGTGGAGTTCATTCCTAGTCTAAGCCTATGG
325 GCCCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* ** *
17558459 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGTACATGCTCTGCTCAAGCA
390 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGAGCA
*
17558524 TGTGCTGGTGCCGTATTTTTCTTCGGT-GGGGCACCA---T-----CA-C-C-GGAGAACCTGAC
455 TGTGCTGGTGCCGCATTTTTCTTC-GTCGGGGCACCATCGTCGGAGCATCGCTGGAGAACCTGAC
*
17558577 CGACGGCATTGGGGTTCCGGCGATCAGGGGGGCCGAGGGGGTTGTGTGCGCACATGATGTGCGAT
519 CGACGGCATTGGGGTTCTGGCGATCAGGGGGGCC--GGGGG--GTGTGCGCACATGATGTGCGAT
* * * *
17558642 GGGTGCTGGTACTTTGCCCTTATATTGTCCCCCTATCCCTCATCAAACCTTGAGAACTGACACCC
580 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
17558707 CCTTAAAGATCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
645 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGG
* *
17558772 ACA-TTTTTTCCAAATGGTCTCAAAATCTTGTACACTACGAGTTTTTAGCTGAATTGTTTTGTGC
710 ACACTTTTTT-CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTGTGC
17558836 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCGAAAATAA-
773 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCCGAAAA-AAT
* * *
17558900 TTTAAAAAATCTCAAA-CTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTCTTG
836 TTTAAAAAATCCCAAACCAGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* *
17558964 CAATGAAACTTCACGTGAAGGCTTAAGGGACCATCGTACGAATTTACAAGCCATAAAAATGGCAT
1 CAATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
17559029 TGGCATGCAAAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGACTTGTGC
66 TGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGC
* * * * *
17559094 ATCCCGTCTCTTTGGCCAGCTTAGTGGCCACCCGTCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
131 ATCCCGTCTCTCTGGCCGGCGTAGTTGCCACCCG-CCGCCCGCCCGCTCGTTTCATCGGTTGGCT
* * * *
17559159 TAGGCATACGGAGTTTATTCCAAGTCGAAGATCGGACCGGACCAAGGGTTGCGGTAGCAGGATCG
195 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAGGATCG
* * * *
17559224 ACAGCACGTAGAGGGAGACCCGGCTGATCCACGGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAG
260 ACAGCACGTAGAGGG-GACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * * *
17559289 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTTAAGCATACG
324 TGCCCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * **
17559354 AAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGAGC
389 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGAGC
* * * *
17559419 TTGTGCTGTTGTCGTATTTTTCTTCGTCGGGGCACCATCGTTCGGAGCATCGCTGGAGAACCTGA
454 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG-TCGGAGCATCGCTGGAGAACCTGA
* * * * *
17559484 CCGATGGCATTGGGGTTCTAGCGATCAGGGGGGTCGGTGGGGTGTGCACGCATGATGTGCGATGG
518 CCGACGGCATTGGGGTTCTGGCGATCAGGGGGGCCGG-GGGGTGTGCGCACATGATGTGCGATGG
* * *
17559549 GTGCTGGTACTTGGCCCTTATATT-TCCCCCTATCCCTCATCAAGCCTCGAGAACTCACACCTCC
582 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
*
17559613 TTAAAGAGCATTTGATATTTTACAGGTTTGCTGCCAATAGCCATTAAAAG-GTCTGAAATGGGGA
647 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATT-AAAGTGTCTGAAATGGGGA
17559677 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTATTTTGTGCAT
711 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTGTGCAT
* * *
17559742 GGCAACAAAAATACAAAGGATCACGTCTAGCAAGTTTGGGTCCAAAACTCCTTTCGAAAAAATTT
775 GCCAACAAAAATAC-AAGGATCACGTCTACCAAGTTTGGG-CCAAAACTCCTTCCGAAAAAATTT
* * * * *
17559807 TAAAAAATCCCAAATC-G-AAAAAGTTTTCAAAAATTGTGTAAAATAGAAAATGAGTCGTATTG
838 TAAAAAATCCCAAACCAGCAAAAAG-TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* *
17559869 CCAA-GAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAATTGGCA
1 -CAATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
17559933 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
65 TTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCG
* * * * * * * * *
17559998 CGTCCCATCTCTCTAGCCGACGTAGTTCCCATCCGTCCGCCAGCCCGCTAGTTTCATCAGTTGGC
130 CATCCCGTCTCTCTGGCCGGCGTAGTTGCCACCCG-CCGCCCGCCCGCTCGTTTCATCGGTTGGC
* * * * ***
17560063 TTAGGCATACAGAGTTCATTCCTAGTCTAAGATTGGACCGGACTGAGGGCAACGGTAGCAGGATC
194 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAGGATC
** * * * **
17560128 -AGCAGCACGTAGATGGGGACCCGATTGATCCTCGGCTTGCGCATCCTGCCCATCTGGCTAGCTG
259 GA-CAGCACGTAGA-GGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * *
17560192 AGAGCCCACACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGAATA
322 AGTGCCCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* * ** * * *
17560257 CGGAGTTCATTCCCCGTCTAAGATCAGACTGGACCGAGAGTTACGGTAGCACATGCTGGGCTCGG
387 CGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGA
* * * *
17560322 GCATGTGCTGGTGCCACATTTTTCTTTGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTG
452 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCTGGAGAACCTG
* * * *
17560387 ACCGTCGGCATTGGGGTTCCGACGATC-GGGGGAGCCGGGGGGTGTGCGCACATCATGTGCGATG
517 ACCGACGGCATTGGGGTTCTGGCGATCAGGGGG-GCCGGGGGGTGTGCGCACATGATGTGCGATG
17560451 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
581 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * *
17560516 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGAGGA
646 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGA
* *
17560581 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTCAGCTGAATTTCTTTGTGCAA
711 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT-TTTGTGCAT
*
17560646 GCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGACCAAAACTCCTTCCGAAAAAATTTT
775 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG-CCAAAACTCCTTCCGAAAAAATTTT
* * ** *
17560711 AAAAAATCTCGAACCA-CAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTG
839 AAAAAATCCCAAACCAGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* * * *
17560772 CCATTAATCTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAACGGCAT
1 CAATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
**
17560837 TGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC-AGCTTGCG
66 TGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGA-CTTGCG
* * * *
17560901 CATCCCGTCTCTCTGGCCGGCGTAGTCTCTGCCTGCCCGCTCGCCTGCCTGGTCGTTTCATCGGT
130 CATCCCGTCTCTCTGGCCGGCGTAG--T-TGCC-ACCCGC-CGCCCGCCCGCTCGTTTCATCGGT
* * * * * *
17560966 TGGCTTAGGCGTACGGAGTTCATTCCCAGCCTAAGATCAGACCGGATCGAGGGTTGTGATAGCAG
190 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAG
* * * * *
17561031 TATCGACAGCATGTAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCGACCCTCTGGCCGA
255 GATCGACAGCACGTAGA-GGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* *
17561096 CTGAGTGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGC
319 CTGAGTGCCCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* ** * *
17561161 ATACGGAGTTCATTCCCAGTCTAAGTTTC-GATTAGACCGAGGGCTACAGCAGCACATGCTGGGC
384 ATACGGAGTTCATTCCCAGTCTAAG-ATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGC
* * * * * ** *
17561225 TCG-GGATTTGTTGGTGCTGCATTTTTCTTCATCAAGCCACCATCGTCGGAGCATCG-TCGGAGA
448 TCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCT-GGAGA
* *
17561288 ACCTGACCGACGGCATTAGGGTTCTGGCGATCA--GGGGTCGGGGGGTGTGCGCACATGATGTGC
512 ACCTGACCGACGGCATTGGGGTTCTGGCGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * * * *
17561351 GATGGGAGCTGGTACTTGGCCCTTATGTTGGCCCCCTATCCATCATCAATCCTCAAGAACTCACA
577 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
17561416 CCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATG
642 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATG
* *
17561481 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTGGAGTTTTTAGCTGAATTTTTTTGT
707 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGT
* * ** * *
17561546 GCATGCCATA-AAATATACAAGGATCATGTCTACCTGGTTTGGGGCCAAAAATCCTTCCAAAAAA
771 GCATGCCA-ACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCCGAAAAA
* * *
17561610 ATTTTAAAAAATCCCGAACC-GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
834 ATTTTAAAAAATCCCAAACCAGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
17561674 TG
899 TG
* *
17561676 CCATGAAACTTCTCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
1 CAATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
17561741 TGGCA--CATAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCAACGACTTGC
66 TGGCATGCA-A-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGC
17561804 GCATCCCGTCTCTCTGGCCG
129 GCATCCCGTCTCTCTGGCCG
17561824 CATTCTTGTT
Statistics
Matches: 2509, Mismatches: 291, Indels: 101
0.86 0.10 0.03
Matches are distributed among these distances:
885 140 0.06
886 1 0.00
891 1 0.00
892 1 0.00
893 91 0.04
895 3 0.00
896 184 0.07
900 1 0.00
902 4 0.00
903 285 0.11
904 841 0.34
905 579 0.23
906 89 0.04
907 244 0.10
908 45 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (900 bp):
CAATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGC
ATCCCGTCTCTCTGGCCGGCGTAGTTGCCACCCGCCGCCCGCCCGCTCGTTTCATCGGTTGGCTT
AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAGGATCGA
CAGCACGTAGAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGTG
CCCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
GTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGAGCAT
GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCTGGAGAACCTGACCG
ACGGCATTGGGGTTCTGGCGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTT
TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCAAC
AAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
CCCAAACCAGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
Found at i:17560262 original size:26 final size:26
Alignment explanation
Indices: 17560228--17560279 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
17560218 TGACTTAGGC
17560228 ATACAGAGTTCATTCCCAGTCTAAGA
1 ATACAGAGTTCATTCCCAGTCTAAGA
* *
17560254 ATACGGAGTTCATTCCCCGTCTAAGA
1 ATACAGAGTTCATTCCCAGTCTAAGA
17560280 TCAGACTGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGA
Found at i:17561163 original size:26 final size:26
Alignment explanation
Indices: 17561133--17561185 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17561123 GTTGACTTAG
17561133 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
17561159 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17561185 G
1 G
17561186 TTTCGATTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17562641 original size:26 final size:26
Alignment explanation
Indices: 17562605--17562655 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17562595 TGACTTAGGT
* *
17562605 ATACGGAGTTCATTCCTAGTCTAAGC
1 ATACAGAGTTCATTCCCAGTCTAAGC
17562631 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
17562656 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:17563607 original size:159 final size:159
Alignment explanation
Indices: 17563313--17563687 Score: 425
Period size: 159 Copynumber: 2.4 Consensus size: 159
17563303 CGTCTGCCCG
* * * * * *
17563313 CCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT
1 CCCGCACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACC
* * * * * * *
17563378 GGACCGAGGGTTATGGCAGCAAGATCAGCAGTACACTGAGGGGGACTCGGTCGATCCCCGGCTTG
66 GGACCAAAGGTTACGGCAGCAAGATCAGCAGTACACTGAAGGAGACTCGATCGATCCCCAGCTTG
* *
17563443 CACATCCCACCCCTTTGGCC-GGTGAGGCA
131 CACATCCCACCCCTCTGGCCTGCTGA-GCA
* * * * *
17563472 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCTTAGTCTAAGATTAGACC
1 CCCGCACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACC
* * * *
17563537 GGACCAAAGGTTGCGGCAGCAGGATCGGCAG-A-ACGTAGAAGGAGAC-CTGATCGATTCCCAGC
66 GGACCAAAGGTTACGGCAGCAAGATCAGCAGTACAC-T-GAAGGAGACTC-GATCGATCCCCAGC
* * *
17563599 TTGGACATCCCGCCCCTCTGGCCTGCTGAGCG
128 TTGCACATCCCACCCCTCTGGCCTGCTGAGCA
* *
17563631 CCCGCACGCTCGTTTTGTAGGTTGACTTAGGTATACGGAGTTCATTCCTAGTCTAAG
1 CCCGCACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAG
17563688 CATACGGAGT
Statistics
Matches: 180, Mismatches: 32, Indels: 8
0.82 0.15 0.04
Matches are distributed among these distances:
157 2 0.01
158 3 0.02
159 171 0.95
160 4 0.02
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (159 bp):
CCCGCACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACC
GGACCAAAGGTTACGGCAGCAAGATCAGCAGTACACTGAAGGAGACTCGATCGATCCCCAGCTTG
CACATCCCACCCCTCTGGCCTGCTGAGCA
Found at i:17563699 original size:26 final size:26
Alignment explanation
Indices: 17563663--17563713 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17563653 TGACTTAGGT
* *
17563663 ATACGGAGTTCATTCCTAGTCTAAGC
1 ATACGGAGTTCATTCCCAATCTAAGC
17563689 ATACGGAGTTCATTCCCAATCTAAG
1 ATACGGAGTTCATTCCCAATCTAAG
17563714 ATCGGATCGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAATCTAAGC
Found at i:17564616 original size:26 final size:26
Alignment explanation
Indices: 17564565--17564617 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17564555 GTTGACTTAG
**
17564565 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAACCTAA
*
17564591 GCATACGGAGTTCATTGCCAACCTAA
1 GCATACGGAGTTCATTCCCAACCTAA
17564617 G
1 G
17564618 ATCAGATCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAACCTAA
Found at i:17566061 original size:904 final size:900
Alignment explanation
Indices: 17563472--17568078 Score: 5787
Period size: 904 Copynumber: 5.1 Consensus size: 900
17563462 CGGTGAGGCA
* * * * * * *
17563472 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCTTAGTCTAAGATTAGACC
1 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACC
* * * * * * * * *
17563537 GGACCAAAGGTTGCGGCAGCAGGATCGGCAGAACGTAGAA-GGAGACCTGATCGATTCCCAGCTT
66 GAACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCA-AAGGGGGACCCGCT-GATCCCCAGCTT
* * *
17563601 GGACATCCCGCCCCTCTGGCCTGCTGAGCGCCCGCACGCTCGTTTTGTAGGTTGACTTAGGTATA
129 GG-CATCCCGCCCCTCTGGCCTGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* * *
17563666 CGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGATC-GAATTGAG
193 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAG-ATCGAG
* * * * * *
17563730 GGTCGTGACAGCACGTGCTGGGCTCGAGCATCTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACC
257 GGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACC
* * * *
17563795 ATCGTCGGAGCATCTCCAGAGAACCTGATCGGCGGCGTTGGGGTTCTGGCGATCGGGGGGGCCGG
322 ATCGTCGGAGCATCGCC-GAGAACCTGATCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGG
17563860 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
386 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* * *
17563925 CATCAAACCTCGAGAACTCACACCCCCTAAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGT
451 CATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* *
17563990 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTTAAATGGTCACAAAATCTTGTACACTTTGA
516 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* *
17564055 GTTTTTAGCT-AATTGTTTTTGTGCATGCCAAAAAAATATACAAGGGTCAAGTCTACCAAGTTTG
581 GTTTTTAGCTGAATT-TTTTTGTGCATGCCAAAAAAA-ATACAAGGATCACGTCTACCAAGTTTG
* ** * * **
17564119 GGGCCAAAGCTCCTTTTGAAAAAATTTTGAAAAATCCCGAACCT-CAAAAAGTTTTGAAAATCAT
644 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAA-CTGCAAAAAGTTTCAAAAATCAT
* *
17564183 GAAATATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTCAAGGGACCATTGTATG
708 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
*
17564248 ATTTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTAC
773 AATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * * *
17564313 CACCCTATCGATCCACGGCTTGCACAACCCGTCTCCCTGGCCGACGTAGTGCCCGCCCGCCCG
838 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGTCGACGTAGTGCCCGCCCGCCCG
* * ** * * * *
17564376 CTCGCCTGCTC-AATCTGTCTGTTGGCTTAGGCATATGGAGTTCATTCCTAGTCAAAGATCAAAC
1 CCCGCCCGCTCGTTTC-GTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGAC
* * * *
17564440 CAGAA-CGAGGGTTGTGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCAGCT
65 C-GAACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAAAGGGGGACCCG-CTGATCCCCAGCT
* * * * *
17564504 TGTGCATCCCGCCCCTCTGGCTTGCTGAGTGCACACACGCTCGTTTCATGGGTTGACTTAGGCAT
128 TG-GCATCCCGCCCCTCTGGCCTGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* ** * *
17564569 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTGCCAACCTAAGATCAGATCAAATCGAG
192 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGATCGAG
* * *
17564634 GGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTTGCCGGGGCACC
257 GGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACC
* ** * * ** *
17564699 ATCGTCGGAGAATCATCGAAGAACCTGATCGGTGGCATTGGGATTTTGACGATC-GGGGGG-CAG
322 ATCGTCGGAGCATCGCCG-AGAACCTGATCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGG
* * * * *
17564762 GGGGTGTGCGCACATGATGTCCAATTGGTACTGGTACTTGGCCCTTATATTGGGCCCCTATCCCT
386 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* * *
17564827 CATCAAACCTCGAGAACT-ACCAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTCCTGCCAG
451 CATCAAACCTTGAGAACTCA-CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* * * * *
17564891 TTGACGTTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTGG
515 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* *
17564956 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGG
580 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * * * * * * *
17565021 GG-CAAAACTCCTTTCAAAAAAATTGTAAAAATTCTTGAGCCGTAAAAAGTTT-AGAAAATTGA-
645 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACTGCAAAAAGTTTCA-AAAA-TCAT
* * * * * * *
17565083 GAAAAATAGAAAATGAGTCATCCTGCCATAAAACTTCATGTGAGGGCTTAAGGGACCATTGTATT
708 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
*
17565148 AATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCGTAAACCCACCTAC
773 AATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * * * *
17565213 CACCCTATCGGTCCACGGCTTGCGCATCTCGTCTCTCTAGTGGGCGTAGTGCCCGCCCGTCTG
838 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGTCGACGTAGTGCCCGCCCGCCCG
* * * * * *
17565276 CCCGCCCGCTCGTTTCATCAGTAGGCTTAGGCATACGGTGTTCATTCGTAGTCTAATATCAGACC
1 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACC
*
17565341 -AGACCGAGGGTTGCGGCAGCAGGATCGGCAGCATGCAAAGGGGGACCCAGCTGATCCCCTA-CT
66 GA-ACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAAAGGGGGACCC-GCTGATCCCC-AGCT
* * * *
17565404 TGCGTATCCTGCCCTTTTGGCCTGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
128 TG-GCATCCCGCCCCTCTGGCCTGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * * *
17565469 ACGGAGTTCATTCCCAGTCTAAACATATGAAGTTCACTCCCAGTCTAAGATCGGATCAGATCGAG
192 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGATCGAG
* * *
17565534 GGTTACGATAGCACATGCTGGGCTCGGGCATGTGCTAGTGCCGCATTTTTCTTCGTCGGGGCACC
257 GGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACC
* * * * * *
17565599 ATTG-CTGGACCATCGCCTGAGAACCTGACCGGCGACATTGGGGTTCCAACGATCGGGGGGGTCG
322 ATCGTC-GGAGCATCGCC-GAGAACCTGATCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCG
* *
17565663 AAGGGGGTGTGCACACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
385 --GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
17565728 CCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
448 CCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
*
17565793 AGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
513 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
** * *
17565858 TAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTT
578 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT
* * * * * *
17565923 -GGGACAAAACTCCTTCCAAAAAAATTGTAAAAATTCTCGAGCTGCAAATAGTTTCAAAAATCAT
643 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACTGCAAAAAGTTTCAAAAATCAT
*
17565987 GAAAAATA-AGAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
708 GAAAAATAGA-AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* ** *
17566051 GAATTTACAAGCCATAACAATGGCATTGGCACATAGAAATATCAAGATGTGCCTAAACCCACCTA
772 GAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * * * * *
17566116 CCACCCTATCGATCCATGGCCTGTGCATCCTGTCTCTCTGGCCGAAGTAGT------------G
837 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGTCGACGTAGTGCCCGCCCGCCCG
* * * * ** *
17566168 CCCGCCCGTTCGTTTTGTCGATTGGCTTAGGCATACGGAGTTCAAT-CTAGGTCTAAGATTGGGC
1 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTA-GTCTAAGATCAGAC
** ** * * * * * *
17566232 CGAACTAAGGGTTATGGTAGCAGGATCAGCAGTACACTAAGGGGGACCCGACCGATCCCCAGCTT
65 CGAACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAAAGGGGGACCCG-CTGATCCCCAGCTT
* * * * * *
17566297 GGCAATCCCGCCCCTCTGGCCTGCTGAACGCCCGTAAGCTCATTTTGCGGGTTGACTTAGGCATA
129 GGC-ATCCCGCCCCTCTGGCCTGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* * * * * * * *
17566362 CTGAGTTCATTTCTATTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCAACG
193 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGATCGAGG
* * * * ** *
17566427 GCTACAACAGCACATGCTGGGCTCGGG-ATGTGTTGGTGCCAAATTTTTCTTCGTCAGGGCACCA
258 GTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
* * * *
17566491 TCGTCGGAGCATCGCCGAAGAACCTGACCGACGGCATTAGGGCTCCGACGATCGGGGGGGCCGGG
323 TCGTCGGAGCATCGCCG-AGAACCTGATCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG
* *
17566556 GGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGG-ACCCTATCCCAT
387 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC-T
* * * * *
17566620 -GTCAAACCTTGAGAACTCACACCCCTTTAAAGAGCATTTGAGATGTCA-ATGGTTTGCTGCCTG
451 CATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA-GGTTTGCTGCCAG
*
17566683 TAGCCGTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
515 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * * *
17566748 AGTTTTTAGCTGAATTTTTTTGTGAACGCCAAAAAAAATACAAGGATCACATCTACCAATTTTGG
580 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * *** *
17566813 GGCCAAAA-TTCTCTCCGAAAAAATTTTAAAAAATCCCGAACCATAAAAATTTTCAAAAATCATG
645 GGCCAAAACTCCT-TCCGAAAAAATTTTAAAAAATCTCGAACTGCAAAAAGTTTCAAAAATCATG
* * *
17566877 AAAAATAGAAAACGCGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGA
709 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* *
17566942 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAAATGAAGATGTGCCTAAACCCACCTACC
774 ATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * * * *
17567007 ACCCTATCGATCCACAGCTTGTGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCGCTCG
839 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGTCGACGTAGTGCCCGCCCGCCCG
* *
17567065 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
1 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACC
* * * * * * * *
17567130 GAACTGAAGGTTGTGGCAGTAGGATCGGCAGCACGCAAATGGGGACTCGATCGAT-CCCTGACTT
66 GAACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAAAGGGGGACCCGCT-GATCCCCAG-CTT
* * *
17567194 -ACGATCCCGCCCCTCTGGCC-GACTGAGCGTCCGCACGCTCGTTTCGTGGGTTAACTTAGGCAT
129 GGC-ATCCCGCCCCTCTGGCCTG-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * * * *
17567257 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTTCCAGTCTAAGATGGGACCGGACCGAG
192 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGATCGAG
* * **
17567322 GGTTGCGACCA-CACATGCTGGGCTCAGGCATGTGCTGGT-CCACATTTTTCTTCGTCAAGGCAC
257 GGTTGCGA-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCAC
* * * * **
17567385 CATCATCGGAGCATCGTCGGAGAACCTGATCGACGGCATTAGGGTTCCGGTGATC-GGGGGGCCG
321 CATCGTCGGAGCATCG-CCGAGAACCTGATCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-
** * *
17567449 AGGGGGGTGTGCGCTTATGATGTGCGATGGGTGCTGGTAGTTAGCCCTTATATTGGCCCCCTATC
384 -GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* *
17567514 CCTCATCAAACCTTGAGAACTCACACCCTCTTAAAGAGCATTTTAGATTTTACAGGTTTGCTGCC
448 CCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* *
17567579 AGTAGCCATGAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
513 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* *
17567644 CGATTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTT
578 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT
* *
17567709 GGGGCCAAAATTCCTTCCGAAAAAATTTTAAAAAATCTCGAACTGCAAAAAGTTTCAAAAATCGT
643 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACTGCAAAAAGTTTCAAAAATCAT
* *
17567774 GAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTCCACGTGAAGGCTTAAGGGACCATTGTATG
708 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* * **
17567839 AATTTACAGGCCATAAAAATGGCATTGGAACATAG-AATATGAAGATGTGCCTAAACCCACCTAC
773 AATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * *
17567903 CACCTTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGTCGATGTAGTGCCCCCCCGCCCG
838 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGTCGACGTAGTGCCCGCCCGCCCG
* * * * *
17567966 TCTGCCCGCTCGTTTCGTCGGTTGTCCTAGGCATACGGAGTTCATTCTTAGTCTAAGATCAGACC
1 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACC
* * * * * *
17568031 GAACCGACGTTTACGGTAGTAGGATCGGTAGCACGCAAAGGGGGACCC
66 GAACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAAAGGGGGACCC
17568079 AACGGATCCT
Statistics
Matches: 3196, Mismatches: 442, Indels: 133
0.85 0.12 0.04
Matches are distributed among these distances:
887 1 0.00
888 186 0.06
889 262 0.08
890 2 0.00
891 88 0.03
892 228 0.07
893 1 0.00
895 9 0.00
896 198 0.06
897 235 0.07
898 331 0.10
899 7 0.00
900 519 0.16
901 145 0.05
902 211 0.07
903 20 0.01
904 748 0.23
905 5 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (900 bp):
CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACC
GAACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAAAGGGGGACCCGCTGATCCCCAGCTTGG
CATCCCGCCCCTCTGGCCTGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTT
GCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG
TCGGAGCATCGCCGAGAACCTGATCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGT
GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
AACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
TAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
AACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACTGCAAAAAGTTTCAAAAATCATGAAAAATA
GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
AGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
CGATCCACGGCTTGCGCATCCCGTCTCTCTAGTCGACGTAGTGCCCGCCCGCCCG
Found at i:17566407 original size:26 final size:26
Alignment explanation
Indices: 17566357--17566409 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17566347 GTTGACTTAG
* * * *
17566357 GCATACTGAGTTCATTTCTATTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17566383 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17566409 G
1 G
17566410 ATCAGATCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.34
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17567289 original size:26 final size:26
Alignment explanation
Indices: 17567253--17567305 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17567243 GTTAACTTAG
17567253 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17567279 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17567305 G
1 G
17567306 ATGGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17568592 original size:26 final size:26
Alignment explanation
Indices: 17568544--17568596 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17568534 GTTGACTTAG
* ***
17568544 GCATACGGAGTTCATTTTGAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17568570 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17568596 G
1 G
17568597 ATCGGACTAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17569491 original size:26 final size:26
Alignment explanation
Indices: 17569443--17569495 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17569433 GTTGACTTAG
***
17569443 GCATACAGAGTTCATTTTGAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
17569469 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17569495 G
1 G
17569496 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17570816 original size:888 final size:886
Alignment explanation
Indices: 17568493--17572853 Score: 5260
Period size: 880 Copynumber: 4.9 Consensus size: 886
17568483 TGTGCATCTC
* * *
17568493 GCCCCTCTGGCTGGCTGAGCTCTCGCACGCGT-GTTTCATGGGTTGACTTAGGCATACGGAGTTC
1 GCCCCTCTGGCCGGCTGAGCGCCCGCACGC-TCGTTTCATGGGTTGACTTAGGCATACGGAGTTC
*** * *
17568557 ATTTTGAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGTGGC
65 ATTCCCAGTCTAAGCATACG-AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGC
* * *
17568622 AGCACATGGTGGGC-TCGAGCATGTGCTGGTGCTGCATTTTTCTTCGCCGGGCACCATCGCTAGA
129 AGCACATGCT-GGCTTCG-GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGCACCATC-C---A
* * *** *
17568686 GCATCGTCGGAGAACCTGACCGACGGGATTAGGGTTCCGAC-AATAGGGGGCCAGGGGGTGTGCG
188 G---C-TCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGACGGGGGGGCCGGGGGGTGTGCG
* *
17568750 CACATGATGTGCGATGGGTGCTGGTATTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCT
249 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
17568815 CGAGAACTCACACCCCCTTAAAGAGCA-TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
314 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
*
17568879 GTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-AGTTTTTTAGC
379 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA-TTTTTTAGC
* *
17568943 TGAATTTTTTTTTGCATCCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
443 TGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * ** * * *
17569008 CCTTCCAAAAAAATTTTAAAAAA-TCTTGAACCGCAGAAAGTTTCAAAAATCGTGAAAAATAGAA
508 CCTTTCGAAAAAATTTTAAAAAATTC-CAAACCGTAAAAAGTTTCAAAAATCGAGAAAAATAGAA
* * * *
17569072 AACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTAAAAAGC
572 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* *
17569137 CATAAAAATGGCATTGGCATGCAGAAATATAAAGATGTTCCTAAACCCACCTACCACCCTATCGA
637 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * * * * *
17569202 TCCACGACTTGCGCGTCCCGTCTCTCTTGTCGGCGTAGTGCCCGCCTGCCCGCCCACGCACTCAT
702 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG-CC-CG--CTCGT
* * * *
17569267 TTCGTCGGTTGGCTTCGGCGTACGGAGGTCATTCCCAGTCTAAGATTAGACCAGACTGAGGGTTG
763 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTG
* * * ** * * * * * * *
17569332 TGGCAGCAAGATGGGTAGCACGTAGAGAGGGACCCGACTGATCCTCGGCTTGTGCATCCC
828 CGACAGCAAGATCGACAGCACGCAAAGGGGGACCCGAC-CATCCTCGACTTGCGCATCCT
* * * * *
17569392 GCCCCTCTGGTCGGCTGAGCTCTCGCACGCAT-GTTTCGTGGGTTGACTTAGGCATACAGAGTTC
1 GCCCCTCTGGCCGGCTGAGCGCCCGCACGC-TCGTTTCATGGGTTGACTTAGGCATACGGAGTTC
*** * *
17569456 ATTTTGAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAAGGTTGAGGC
65 ATTCCCAGTCTAAGCATAC-GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGC
* * * *
17569521 AGCACATGGTGGGC-TCGGGCATGTGC-GTGTGCTGCATTTTTCTTCGCCGGGCAGCATCGCTAG
129 AGCACATGCT-GGCTTC-GGCATGTGCTG-GTGCCGCATTTTTCTTCGTCGGGCACCATC-C---
* * * ***
17569584 AGCATCGTCGAAGAACCTGGCC-AGCGGGATTAGGGTTCCGACGA-TAAGGGGCCGGGGGGTGTG
187 AGC-TCG--G-AGAACCTGACCGA-CGGCATTGGGGTTCCGACGACGGGGGGGCCGGGGGGTGTG
* *
17569647 CGCACATGATGTGCGATGGGTGCTGGTACTTTGCCCTTATATTGGCCTCCTATCCCTCATCAAAC
247 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
**
17569712 CTCGAGAACTCACACCCCCTTAAAGAATATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
312 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* *
17569777 AAGTGTCTGAAATGGGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
377 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAG
* *
17569842 CTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
442 CTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
*
17569907 TCCTTTCGAAAAAATTTTAAAAAATTCCAAACCGTAAAAAGTTTCAAAAATCGAGAAAAACAGAA
507 TCCTTTCGAAAAAATTTTAAAAAATTCCAAACCGTAAAAAGTTTCAAAAATCGAGAAAAATAGAA
*
17569972 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGG
572 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
*
17570037 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGA
637 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * *
17570102 TCCATGGCTTGCCCATCCCGTCTCCCTGGTCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCG
702 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCG
* * *
17570167 TCGGTTGGCTTAGGTATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGAT
767 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGCGAC
* * * *
17570232 AGCAGGATCGGCAGCATGCAAAGGGGGACCCAGTCCATCCTCGACTTGCGCATCCT
832 AGCAAGATCGACAGCACGCAAAGGGGGACCC-GACCATCCTCGACTTGCGCATCCT
* * * *
17570288 GCCCTTCTGCCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTCGATTTAGGCATACGGAGTTCA
1 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
* * *
17570353 TTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCAAAGATCGGACCAGATCGAGGGTTGCAGCA
66 TTCCCAGTCTAAGCATAC-GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCA
* * *
17570418 GCACATCCTAGGTTTAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCAT-C-GC-CG
130 GCACATGCT-GGCTTCGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG-GGCACCATCCAGCTCG
* * * * *
17570480 GAGAACTTGACCGACTGCATTGGGGTTCCGGCAACCGGGGGGGCCGAGGGGTGTGCGTC-CATGA
193 GAGAACCTGACCGACGGCATTGGGGTTCCGACGA-CGGGGGGGCCGGGGGGTGTGCG-CACATGA
* * *
17570544 TGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAAA
256 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * * * * *
17570609 TTAGACCCCCTTAAAGAGAATTTGAGATTTTATAGGTTTGCTGCCAGTGGCCGTTAAAGTGTCTG
321 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
17570674 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAACTGAATTTT
386 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTT
* * * * * * *
17570739 TTTGTGAATGCCAAAAAAAATACAAGGATCATGTATACTAAGTTTGGGCCCAAAAATCCTTCCGA
451 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGA
* * * * *
17570804 AAAAAGTTTAAAAAATCCCAGACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGCCG
516 AAAAATTTTAAAAAATTCCAAACCGTAAAAAGTTTCAAAAATCGAGAAAAATAGAAAACGAGTCG
17570869 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
581 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * * *
17570934 GGCATTGGCATGAAAAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTACCGATCCACGACT
646 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
*
17570999 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCTCGTCCGTTCACCCGCCTGCTCGTTTCGT
711 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG--C--CCG----CCCGCCCGCTCGTTTCGT
* *
17571064 CGGTTGGCTAAGGCATACGGAGTTCATT-CCATTCTAAGA-TAGCACCAGACCGAGGGTTGCGAC
768 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAG-ACCAGACCGAGGGTTGCGAC
* * * *
17571127 AGCAGGATCGACAGCACGCAGAGGGGGACCAGACCGATCCCCGACTTGCGCAT-CT
832 AGCAAGATCGACAGCACGCAAAGGGGGACCCGACC-ATCCTCGACTTGCGCATCCT
* * * * * *
17571182 CGCCCATCCGGCCAGCTGAGCACCCGCACGCTCGTTTTACGGGTTGACTTAGGCATACGGAG---
1 -GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTC
*
17571244 -TT--CA-T-T---C---C-----CA-----A-TCTAAGATCGGACCAGACCGAGGGTTGCGGTA
65 ATTCCCAGTCTAAGCATACGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCA
*
17571287 GCACATGCTGGGC-TCGGACATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCAGA
130 GCACATGCT-GGCTTCGG-CATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGCACCAT--CC--A
*
17571351 GCATCGCAAGAGAACCTGACCGACGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGC
188 GC-TCG---GAGAACCTGACCGACGGCATTGGGGTTCCGACGA-CGGGGGGGCCGGGGGGTGTGC
* * *
17571416 GCACATGATGTACGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACC
248 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* *
17571481 TCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAA
313 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * *
17571546 AGTGTCTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACCTCAATTTTTTAGC
378 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGC
* *
17571611 TGAATTTTTTTGTGCATGCCAAAAAACATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATT
443 TGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * * ** * *
17571676 CCTTTTGAAAAAAGTTTAAAAAATCCCAAACCACAAAAATTTTCAAAAATC-ATGAAAAATAAAA
508 CCTTTCGAAAAAATTTTAAAAAATTCCAAACCGTAAAAAGTTTCAAAAATCGA-GAAAAATAGAA
* * *
17571740 AACGAGTCGTCTTGCGATGACACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
572 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
***
17571805 CATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
637 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * **
17571870 TCGACGGCTTGCGCATCCCGTCTCTCTAGCCGACGTAGT--------ACCAACCCGCTCGTTTCG
702 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCG
* * * * *
17571927 TCGG-TGGCTTAGTCATATGGAATTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGAT
767 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGCGAC
* ** * * *
17571991 AGCAAGATCGACAGCACGC-AATGGGGACCCGATAACCCGCTTG-CTTACGCATCC-
832 AGCAAGATCGACAGCACGCAAAGGGGGACCCGACCA-TC-CTCGACTTGCGCATCCT
** * * *
17572045 GCCCCTCTGGCCGGCTGAGCGCCCATACACTCG-TTCGTTGGGTTGA-TTAGG-ATACAGAGTTC
1 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC-ATGGGTTGACTTAGGCATACGGAGTTC
* * * *
17572107 ATTCCCAATCTAAGC-TAACGGAGTTCATTTCCCAGTCTTAAGATGCAGGATCAGGGACCAAGTG
65 ATTCCCAGTCTAAGCAT-AC-GAGTTCA-TTCCCAGTC-TAAGAT-C-GGACCA--GACCGAGGG
* *
17572171 TTGCGGTATAGCACATGCTCGGC-TCGGGCATGTGCTGGTGCCGCA-TTTTCTTGCGTCGAGCAC
122 TTGCGG--CAGCACATGCT-GGCTTC-GGCATGTGCTGGTGCCGCATTTTTCTT-CGTCGGGCAC
* * ** *
17572234 CAT-C-GC-CGGAGAA-CTGACCGATGGCATTGAGGTT-CGGTGATCGGAGGGGCCAGGGGGGCT
182 CATCCAGCTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGA-CGGGGGGGCC-GGGGGG-T
*
17572294 GTGCGCACATGATGTGCGTTGGGTGCTGGTACTTGG--C---T-TTGGCCCCCTATCCCTCATC-
244 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* *
17572352 AACCTCGA-AACCCCACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
309 AACCTCGAGAA-CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * * * *
17572416 ATAAAAGTGTCTGAAATTGGGACACTTTTTTCAAATGGTCAGAAAATCCTGTACACTTCGAGTTT
373 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTT
*
17572481 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
438 TTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
** * **
17572546 AAACTCCTTTCGAAAAAATTTTAAAAAA-TCTTGAACCATAAAAAGTTTTGAAAATC-ATGAAAA
503 AAACTCCTTTCGAAAAAATTTTAAAAAATTC-CAAACCGTAAAAAGTTTCAAAAATCGA-GAAAA
* * *
17572609 ATAGAAAACGAGTCATCTTGCCGTGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTT
566 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * *
17572674 ACAAGCCATAAAAATTGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACATACTACCC
631 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* *
17572739 TCTCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCCC
696 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG--C-CC-GCCC
17572804 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
757 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
17572854 CATACGGAGT
Statistics
Matches: 3035, Mismatches: 322, Indels: 221
0.85 0.09 0.06
Matches are distributed among these distances:
860 7 0.00
861 7 0.00
862 34 0.01
863 39 0.01
864 70 0.02
865 2 0.00
866 2 0.00
867 1 0.00
868 4 0.00
869 74 0.02
870 2 0.00
871 1 0.00
872 1 0.00
874 4 0.00
875 392 0.13
876 19 0.01
877 3 0.00
879 1 0.00
880 512 0.17
881 25 0.01
882 39 0.01
884 1 0.00
885 3 0.00
886 26 0.01
887 24 0.01
888 510 0.17
889 6 0.00
890 7 0.00
891 4 0.00
892 16 0.01
893 15 0.00
894 43 0.01
895 128 0.04
896 299 0.10
897 11 0.00
898 5 0.00
899 316 0.10
900 379 0.12
901 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (886 bp):
GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
TTCCCAGTCTAAGCATACGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAG
CACATGCTGGCTTCGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGCACCATCCAGCTCGGAG
AACCTGACCGACGGCATTGGGGTTCCGACGACGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGT
GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAA
TTTTAAAAAATTCCAAACCGTAAAAAGTTTCAAAAATCGAGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGCGACAGCAAGATCGACAG
CACGCAAAGGGGGACCCGACCATCCTCGACTTGCGCATCCT
Found at i:17571634 original size:880 final size:874
Alignment explanation
Indices: 17568560--17572853 Score: 4938
Period size: 888 Copynumber: 4.9 Consensus size: 874
17568550 GGAGTTCATT
* * * *
17568560 TTGAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGTGGCAGC
1 TTGACTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGC
* * * *
17568625 ACATGGTGGGCTC-GAGCATGTGCTGGTGCTGCATTTTTCTTCGCCGGGCACCATCGCTAGAGCA
66 ACATGCTGGGCTCGGA-CATGTGCTGGTGCCGCATTTTTCTTCTCCGGGCACCATCGCCAGAGCA
* * * * *
17568689 TCGTCGGAGAACCTGACCGACGGGATTAGGGTTCCGACAAT--AGGGGGCCAGGGGGTGTGCGCA
130 TCG-C-GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCA
*
17568752 CATGATGTGCGATGGGTGCTGGTATTTGGCCCTTATATTGG-CCTCCTATCCCTCATCAAACCTC
193 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCT-CTATCCCTCATCAAACCTC
17568816 GAGAACTCACACCCCCTTAAAGAGCA-TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
257 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
17568880 TGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-AGTTTTTTAGCT
322 TGTCTGAAATG-GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA-TTTTTTAGCT
* *
17568944 GAATTTTTTTTTGCATCCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
385 GAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* * ** * *
17569009 CTTCCAAAAAAATTTTAAAAAATCTTGAACCGCAGAAAGTTTCAAAAATCGTGAAAAATAGAAAA
450 CTTTCGAAAAAATTTTAAAAAATCCAG-ACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
* * * *
17569074 CGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTAAAAAGCCA
514 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* *
17569139 TAAAAATGGCATTGGCATGCAGAAATATAAAGATGTTCCTAAACCCACCTACCACCCTATCGATC
579 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * * * * *
17569204 CACGACTTGCGCGTCCCGTCTCTCTTGTCGGCGTAGTGCCCGCCTGCCCGCCCACG-CACTCATT
644 CACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC-G-CCGCCC-CGCCGCTCGTT
* * * * *
17569268 TCGTCGGTTGGCTTCGGCGTACGGAGGTCATTCCCAGTCTAAGATTAGACCAGACTGAGGGTTGT
706 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TAGACCAGACCGAGGGTTGC
* * ** * * * * * * *
17569333 GGCAGCAAGATGGGTAGCACGTAGAGAGGGACCCGACTGATCCTCGGCTTGTGCATCCCGCCCCT
770 GACAGCAAGATCGACAGCACGCAGAGGGGGACCAGACCGATCCCCGACTTGCGCAT-CCGCCCCT
* * * *
17569398 CTGGTCGGCTGAGCTCTCGCACGCATGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATT
834 CTGGCCGGCTGAGCGCCCGCACGC----TTC----GTT-A-TT----ATACAG-G-----G
* * *
17569459 TTGAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAAGGTTGAGGCAGC
1 TTGACTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGC
* * * * * *
17569524 ACATGGTGGGCTCGGGCATGTGC-GTGTGCTGCATTTTTCTTCGCCGGGCAGCATCGCTAGAGCA
66 ACATGCTGGGCTCGGACATGTGCTG-GTGCCGCATTTTTCTTCTCCGGGCACCATCGCCAGAGCA
* * * **
17569588 TCGTCGAAGAACCTGGCC-AGCGGGATTAGGGTTCCGACGAT--AAGGGGCCGGGGGGTGTGCGC
130 TCG-CG-AGAACCTGACCGA-CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGC
*
17569650 ACATGATGTGCGATGGGTGCTGGTACTTTGCCCTTATATTGG-CCTCCTATCCCTCATCAAACCT
192 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCT-CTATCCCTCATCAAACCT
**
17569714 CGAGAACTCACACCCCCTTAAAGAATATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
256 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* *
17569779 GTGTCTGAAATGGGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
321 GTGTCTGAAAT-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCT
* *
17569844 GAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
385 GAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* * *
17569909 CTTTCGAAAAAATTTTAAAAAATTCCAAACCGTAAAAAGTTTCAAAAATCGAGAAAAACAGAAAA
450 CTTTCGAAAAAATTTTAAAAAA-TCCAGACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
*
17569974 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGCA
514 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
*
17570039 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATC
579 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * *
17570104 CATGGCTTGCCCATCCCGTCTCCCTGGTCGACGTAGTGCCCG-C-CCG-CCCGCCCGCTCGTTTC
644 CACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCGCCGCCCCG-CCGCTCGTTTC
*
17570166 GTCGGTTGGCTTAGGTATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGA
708 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-AGACCAGACCGAGGGTTGCGA
* * * * * * * *
17570231 TAGCAGGATCGGCAGCATGCAAAGGGGGACCCAGTCC-ATCCTCGACTTGCGCATCCTGCCCTTC
772 CAGCAAGATCGACAGCACGCAGAGGGGGA-CCAGACCGATCCCCGACTTGCGCATCC-GCCCCTC
*
17570295 TGCCCGGCTGAGCGCCCGCACGC-TCGTTTCATGGGTCGATTTAGGCATACGGAG
835 TGGCCGGCTGAGCGCCCGCACGCTTCG-TT-AT---T--A--TA--C--A-GG-G
* * * *
17570349 TTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCAAAGATCGGACCAGATCGAGGGTTGC
1 TTGA----C--TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGC
* * ** *
17570414 AGCAGCACATCCTAGGTTTAGG-CATGTGCTGGTGCCGCATTTTTCTTCGT-CGAGGCACCAT--
60 GGCAGCACATGCT-GGGCTCGGACATGTGCTGGTGCCGCATTTTTCTTC-TCCG-GGCACCATCG
* * * * * *
17570475 -C---GC--CG-GAGAACTTGACCGACTGCATTGGGGTTCCGGCAACCGGGGGGGCCGAGGGGTG
122 CCAGAGCATCGCGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTG
* *
17570533 TGCGTC-CATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
187 TGCG-CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCA
* * * * * * * *
17570597 AACCTCAAGAAATTAGACCCCCTTAAAGAGAATTTGAGATTTTATAGGTTTGCTGCCAGTGGCCG
251 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
17570662 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTT
316 TTAAAGTGTCTGAAAT-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTT
* * * * * *
17570727 TAACTGAATTTTTTTGTGAATGCCAAAAAAAATACAAGGATCATGTATACTAAGTTTGGGCCCAA
380 TAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * *
17570792 AAATCCTTCCGAAAAAAGTTTAAAAAATCCCAGACCGTAAAAAGTTTCAAAAATCGTGAAAAATA
445 AACTCCTTTCGAAAAAATTTTAAAAAAT-CCAGACCGTAAAAAGTTTCAAAAATCGTGAAAAATA
*
17570857 GAAAACGAGCCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
509 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* * * *
17570922 AGCCATAAAAATGGCATTGGCATGAAAAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTAC
574 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
*
17570987 CGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCTCGTCCGTTCACCCGCC
639 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGC-CG-CCG--C-CCCGCC
* *
17571052 TGCTCGTTTCGTCGGTTGGCTAAGGCATACGGAGTTCATT-CCATTCTAAGATAGCACCAGACCG
699 -GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAG-ACCAGACCG
*
17571116 AGGGTTGCGACAGCAGGATCGACAGCACGCAGAGGGGGACCAGACCGATCCCCGACTTGCGCATC
762 AGGGTTGCGACAGCAAGATCGACAGCACGCAGAGGGGGACCAGACCGATCCCCGACTTGCGCATC
* * * *
17571181 TCGCCCATCCGGCCAGCTGAGCACCCGCACGC-TCG-T-TT-TAC-GGG
827 -CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTTCGTTATTATACAGGG
* * *
17571225 TTGACT-TAGGCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGCGGTAGC
1 TTGACTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGC
*
17571289 ACATGCTGGGCTCGGACATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCAGAGCA
66 ACATGCTGGGCTCGGACATGTGCTGGTGCCGCATTTTTCTTC-TCCGGGCACCATCGCCAGAGCA
*
17571354 TCGCAAGAGAACCTGACCGACGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCA
130 TCGC--GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCA
* *
17571419 CATGATGTACGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCG
193 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCG
* *
17571484 AGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGT
258 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* *
17571549 GTCTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACCTCAATTTTTTAGCTGA
323 GTCTGAAATGGG-ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGA
* *
17571614 ATTTTTTTGTGCATGCCAAAAAACATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCCT
387 ATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
* * * ** * * *
17571679 TTTGAAAAAAGTTTAAAAAATCCCAAACCACAAAAATTTTCAAAAATCATGAAAAATAAAAAACG
452 TTCGAAAAAATTTTAAAAAAT-CCAGACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
* * *
17571744 AGTCGTCTTGCGATGACACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
516 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
*** *
17571809 AAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCGA
581 AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * **
17571874 CGGCTTGCGCATCCCGTCTCTCTAGCCGACGTAGT--------AC-CAAC-CCGCTCGTTTCGTC
646 CGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCGCCGCCCCGCCGCTCGTTTCGTC
* * * * *
17571929 GG-TGGCTTAGTCATATGGAATTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGATAG
711 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TAGACCAGACCGAGGGTTGCGACAG
* * * * *
17571993 CAAGATCGACAGCACGCA-ATGGGGACCCGA--TAACCCGCTTG-CTTACGCATCCGCCCCTCTG
775 CAAGATCGACAGCACGCAGAGGGGGACCAGACCGATCCC-C--GACTTGCGCATCCGCCCCTCTG
* * *
17572054 GCCGGCTGAGCGCCCATACACTCGTTCGTTGGGTTGATTAGGATACAGAG
837 GCCGGCTGAGCGCCC--GCA--CG--C-TT-CGTT-ATT---ATACAGGG
* * *
17572104 TTCATTCCCAATCTAAGC-TAACGGAGTTCATTTCCCAGTCTTAAGATGCAGGATCAGGGACCAA
1 TTGA----C--TCTAAGCAT-ACGGAGTTCA-TTCCCAGTC-TAAGAT-C-GGACCA--GACCGA
* * * * *
17572168 GTGTTGCGGTATAGCACATGCTCGGCTCGGGCATGTGCTGGTGCCGCA-TTTTCTTGCGT-CGAG
53 GGGTTGCGG--CAGCACATGCTGGGCTCGGACATGTGCTGGTGCCGCATTTTTCTT-C-TCCGGG
* * ** *
17572231 CACCAT---C---GC--CG-GAGAA-CTGACCGATGGCATTGAGGTT-CGGTGATCGGAGGGGCC
114 CACCATCGCCAGAGCATCGCGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC
* *
17572285 AGGGGGGCTGTGCGCACATGATGTGCGTTGGGTGCTGGTACTTGG--C---T-TTGGCCCCCTAT
179 -GGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTAT
* *
17572344 CCCTCATC-AACCTCGA-AACCCCACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
242 CCCTCATCAAACCTCGAGAA-CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * *
17572407 CCAGTAGCCATAAAAGTGTCTGAAATTGGGACACTTTTTTCAAATGGTCAGAAAATCCTGTACAC
306 CCAGTAGCCATTAAAGTGTCTGAAA-TGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* *
17572472 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
370 TTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGT
** * **
17572537 TTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTTGAACCATAAAAAGTTTTGAAAATC
435 TTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCAG-ACCGTAAAAAGTTTCAAAAATC
* * * *
17572602 ATGAAAAATAGAAAACGAGTCATCTTGCCGTGAAACTTCATGTGAAGGCTTAAGGGACCATTGTA
499 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* *
17572667 TGAATTTACAAGCCATAAAAATTGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACAT
564 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * *
17572732 ACTACCCTCTCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC-C
629 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG-CCGCCGC
*
17572796 GCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
693 -CCCG-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
17572854 CATACGGAGT
Statistics
Matches: 2961, Mismatches: 310, Indels: 259
0.84 0.09 0.07
Matches are distributed among these distances:
861 4 0.00
862 22 0.01
863 39 0.01
864 65 0.02
865 4 0.00
866 3 0.00
867 1 0.00
868 6 0.00
869 92 0.03
870 4 0.00
871 1 0.00
872 3 0.00
874 5 0.00
875 387 0.13
876 27 0.01
877 5 0.00
878 3 0.00
879 9 0.00
880 508 0.17
881 25 0.01
882 39 0.01
883 3 0.00
884 2 0.00
885 4 0.00
886 38 0.01
887 31 0.01
888 510 0.17
889 6 0.00
890 13 0.00
891 5 0.00
892 17 0.01
893 16 0.01
894 49 0.02
895 108 0.04
896 254 0.09
897 17 0.01
898 3 0.00
899 261 0.09
900 368 0.12
901 4 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (874 bp):
TTGACTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGC
ACATGCTGGGCTCGGACATGTGCTGGTGCCGCATTTTTCTTCTCCGGGCACCATCGCCAGAGCAT
CGCGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACAT
GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCGAGA
ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
TGAAATGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTT
TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG
AAAAAATTTTAAAAAATCCAGACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCGCCGCCCCGCCGCTCGTTTCGTCGGTTG
GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGACCAGACCGAGGGTTGCGACAGCAAGAT
CGACAGCACGCAGAGGGGGACCAGACCGATCCCCGACTTGCGCATCCGCCCCTCTGGCCGGCTGA
GCGCCCGCACGCTTCGTTATTATACAGGG
Found at i:17572863 original size:26 final size:26
Alignment explanation
Indices: 17572827--17572905 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
17572817 GTTGGCTTAG
17572827 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17572853 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17572879 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17572905 G
1 G
17572906 ATCAGACCAG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17573793 original size:26 final size:26
Alignment explanation
Indices: 17573757--17573809 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17573747 GTTGACTTAG
17573757 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17573783 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17573809 G
1 G
17573810 ATTGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17575958 original size:863 final size:860
Alignment explanation
Indices: 17572879--17576748 Score: 4684
Period size: 904 Copynumber: 4.4 Consensus size: 860
17572869 CCCAGTCTAA
* * * * * *
17572879 GCATACGGAGTTCATTCGCAGTCTAAGATCAGACCAGACCGAGGGTTCCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCCGATCGAGGGTTACGGCAGCACATGCTGGG
*
17572944 CTAGGGCATGTGCTGGTGCCGCATTTTTCTTTATTGGGGCACCGTCGTCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTC----TT----CACCG--G--GGAGCATCACCGGAGA
* * * * * *
17573009 ACCTAACCGTCGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGTGCTGTGCGCATATGATGTG
119 ACCTAACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* ** *
17573074 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCTTCCTATCCCTCATCAAACCTCGAGAACTCAC
184 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
* * *
17573139 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTCCTGCCAGTAGCCATTCAAGTGTCTGAAAT
249 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGGCAGTAGCCATTAAAGTGTCTGAAAT
** * *
17573204 GGGGACACTTTTTTCAAATGACCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATGTTTTTT
314 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTG
* * * * *
17573269 TGCTTGCCAACAAAAATACAAGGATTATGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAA
378 TGCATGCCAACAAAAATACAAAGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
**
17573334 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACTG-GTCATCT
443 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC-GAGTCATCT
17573398 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
507 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
17573463 ATTGGCACACAGAAATATGTAA-ATGTGCCTAAACCCACTTACCACTCTATCGATCCACGGCTTG
572 ATTGGCACACAAAAATATG-AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
17573527 CGCATCCCGTCTCTCTGGCC-GACGTAGTGCCCGCTCGCCCGCCCGCTCACTCATTTTGTCTGTT
636 CGCATCCCGTCTCTCTGGCCAG-CGTAGTGCCCGCT-GCCCGCCCG----CTCATTTCGTCGGTT
* * * *** * ** * *
17573591 GGCTTAGGCATACGGAGTTCATTCCAAATCTAAGGTCAAACGGGACTGAGGGTTGCGGTAGCAAG
695 GGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGACCGGACCAAGGGTTGCAGCAGCAAG
* * * * *
17573656 ATC-AGCAGTACGCAGAGGAGGACCCGGCCGATCCCTGGCTTGCGCATCCCACCCCTCTGGCCGG
760 ATCGA-CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* *
17573720 CTAAGCGCCCGCACGCTCATTTTGTGGGTTGACTTAG
824 CTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
17573757 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A---CC---C---GA-T---------
* * **
17573822 CGAGGGTTGCGGCAGCACATGTTGGGCTCAAGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGTG
40 CGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC-T------T-
* * * * ** * *
17573887 CACCATCGTCGGAGCATCACCGGAGAACCTGACCAGCAGCATTATGGTTCTGGCGATCTGGGGGG
97 CA-C--CG-GGGAGCATCACCGGAGAACCTAACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGG
* **
17573952 CCGGGGGGTTGTGCGCACATGATGTATGATGGGTGCTGGTACTTTGGCCCTTATATTGG-CCCCT
158 CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC-TTGGCCCTTATATTGGCCCCCT
* * *
17574016 ATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCACTTAAGATTTTACAGGATTGCT
222 ATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
17574081 GGCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
287 GGCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* *
17574146 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAACGATCACGTCTACCAAG
352 CTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAAGATCACGTCTACCAAG
* * * ***
17574211 TTTGGGGCCAAAACTCCTTCCGAAAATATTTTAAAAAATCTCGAACAGCAAAAAGTTTTGCAAAT
416 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAAT
* * *
17574276 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCCTAAGGGACCATTGT
481 CATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* ***
17574341 ATGAATTTACAAGCCATAAAAATGCCATTGGCATGTAAAAATATGAAGATGTGCCTAAACCCACC
546 ATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACC
* * * * **
17574406 TACCACCCTATCGATCGACAGCTTGCGCATCCCATCTCTCTGGCCGGCGTA------G-TGCCAA
611 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCTGCCCG
* * *
17574464 CCCGCTAATTTCGTCGGTTGGCTTAGGCATACGGAATTCATTCCCT-GTCTAAGATTGGACCAGA
676 CCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT-CCTAGTCTAAGATTGGACCGGA
* * * * * * * *
17574528 -CAGAGGGTTACAACAGCAAGATCGACAGCACGCGGCGGGGGACCCAACTGACCCCCAGCTTGCG
740 CCA-AGGGTTGCAGCAGCAAGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCG
* *
17574592 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAG
804 CATCCCGCCCCTCTGGCCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
17574649 GCATACAGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCTAGTTTAAGATCAGATCAGGC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A--CC-----------C-GATC--G-
* * **
17574714 CAAGGGTTACGGCAGCACATGCTGGGCTCGGCCATGTCCTGGTGCCGCATTTTTCTTCGTC--GG
42 --AGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGG
* * *
17574777 AGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGTGATCGGGGGGGCCAGGGGGGGTG
105 AGCATCACCGGAGAACCTAACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGGTG
* * *
17574842 TGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCTTTATATTGGTCCCCTATCCCTCATCAA
169 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* * *
17574907 TCCTTGAGAACTCACACCCCCTTAAAGAGTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
234 ACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGGCAGTAGCCAT
*
17574972 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGTGTTTTT
299 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
17575037 AGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAAGATCACGTCTACCAAGTTTGGGGCCAAA
364 AGCTGAATT-TTTTGTGCATGCCAACAAAAATACAAAGATCACGTCTACCAAGTTTGGGGCCAAA
* *
17575102 ACTCTTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAG
428 ACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAG
*
17575167 AAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGTGACCATTGTATGAATTTACAA
493 AAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
*
17575232 GCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
558 GCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * *
17575297 GATCCATGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGTCCGCCTGCCCGCCCGCTCGTTT
623 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCG-CTGCCCGCCCGCTCATTT
* * *
17575362 CGTCGGTTGGGTTGGGCATACGGAGTTCATTCCTAGTCTAAGATTGGACCGGACCATGGGTTGCA
687 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGACCGGACCAAGGGTTGCA
* * * * *
17575427 GCAGTAGGATCGACAGCATGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATCCCGCCCCTC
752 GCAGCAAGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTC
* * *
17575492 TGGCCAGCTAAGCGCCCGCACGCTCGTTTCATGGGTTAACTTAG
817 TGGCCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * **
17575536 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCCGATCGAGGGTTACGACAGCACATTTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCCGATCGAGGGTTACGGCAGCACATGCTGGG
* *
17575601 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCACCGGAGAACCTAACCGGC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGG-AGCATCACCGGAGAACCTAACCGGC
* * * *
17575666 GGTATTGGGGTTTCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGACGTGCGATGGGTGAT
130 GGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* *
17575731 GGTACTTTGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCGCACCCCCTTAAA
195 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAA
17575796 GAGCATTTGAGATTTTACAGGTTTGCTGGCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
260 GAGCATTTGAGATTTTACAGGTTTGCTGGCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
*
17575861 TTTCAAATGGTCACAAAATCTTGTACACTTGGAGTTTTTAGCTGAATTATTTTGTGCATGCCAAC
325 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTGTGCATGCCAAC
* * * * * *
17575926 AACAATACAATGATCATGTCTACCAGGTTTGGGGCCAAAACACCTTCC-ATAAAAAATTTAAAAA
389 AAAAATACAAAGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA-AAAAATTTTAAAAA
* *
17575990 ATCCCGAACCCCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
453 ATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAAC
* **
17576055 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGCATGCA
518 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACA
* *
17576120 AAAATATGAAGATGTGCCTAAACCCAGCTACCACCCTATCAATCCACGGCTTGCGCATCCCGTCT
583 AAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * *
17576185 CTCTGGCCAGCGTAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCATCGGTTGGCTTAGGCATAC
648 CTCTGGCCAGCGTAGTGCCCG-CTG--C-CC-GCCCGCTCATTTCGTCGGTTGGCTTAGGCATAC
* ** ** * * * * * *
17576250 GGAGTTCATTCCCAGTCTAAGATTGGATTGGACCAAGGGTTGTGGTAGCAGGATGGGCAACACAC
708 GGAGTTCATTCCTAGTCTAAGATTGGACCGGACCAAGGGTTGCAGCAGCAAGATCGACAGCACGC
* * * * * * * * *
17576315 AGAGAGGGACCCGACCAAGCCTCGCCTTGCACATCCCGCCCCTCTGGCCGACTGAGTGCCCGCAC
773 AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCGCCCGCAC
17576380 GCTCGTTTCGTGGGTTGACTTAG
838 GCTCGTTTCGTGGGTTGACTTAG
* * * *
17576403 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGATCGAGGGTT-GGAGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCCGATCGAGGGTTACG-GCAGCACATGCTGG
* * ** * *
17576467 GCTCTGGCATGTGTTGGTATCGCATTTTTCTTCCCCGGGGCACCATCGCCGGAGCATCGTCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGG----A--G-C--ATCA-C--CGGAG
* * * *
17576532 AACCTTACTGGCGGCATTGGGGTTCCGGTGATCGGGGGGGCC-GGGGGGTGTGCACACATGATGT
118 AACCTAACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * * * *
17576596 GCAATGGGTGCTGGTACTTGGCCCTCATATTAGCCCCCTAACCCTCATCAAACCTCGAGAACTCA
183 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
* *
17576661 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTAGCAGTAGCCATTAAAGTGTCTAAAA
248 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGGCAGTAGCCATTAAAGTGTCTGAAA
17576726 T-GGGACACTTTTTTCAAATGGTC
313 TGGGGACACTTTTTTCAAATGGTC
17576749 GGTTGGCTTA
Statistics
Matches: 2610, Mismatches: 293, Indels: 180
0.85 0.10 0.06
Matches are distributed among these distances:
861 51 0.02
862 1 0.00
863 481 0.18
864 50 0.02
865 1 0.00
866 7 0.00
867 245 0.09
870 2 0.00
873 1 0.00
875 3 0.00
876 23 0.01
877 141 0.05
878 136 0.05
879 452 0.17
880 2 0.00
881 1 0.00
882 1 0.00
883 1 0.00
884 2 0.00
885 4 0.00
886 5 0.00
887 182 0.07
888 4 0.00
889 1 0.00
891 4 0.00
892 227 0.09
893 3 0.00
894 2 0.00
896 8 0.00
897 4 0.00
898 1 0.00
899 2 0.00
901 1 0.00
903 3 0.00
904 536 0.21
905 19 0.01
907 3 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (860 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCCGATCGAGGGTTACGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGAGCATCACCGGAGAACCTAACCGGCG
GCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGGCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCAACAA
AAATACAAAGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
CCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTC
ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAA
ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
TGGCCAGCGTAGTGCCCGCTGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
TTCCTAGTCTAAGATTGGACCGGACCAAGGGTTGCAGCAGCAAGATCGACAGCACGCAGAGGGGG
ACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCGCCCGCACGCTCGTTT
CGTGGGTTGACTTAG
Found at i:17578778 original size:159 final size:159
Alignment explanation
Indices: 17578496--17578858 Score: 417
Period size: 159 Copynumber: 2.3 Consensus size: 159
17578486 CGCCCACTCG
** *
17578496 TTTCATCGGTTGGCTTAGAAATATGGAGTTCATTCCTAGTCTAATATTGGACCAAACTGAGGGTT
1 TTTCATCGGTTGGCTTAGGCATATGGAGTTCATTCCTAGTCTAAGATTGGACCAAACTGAGGGTT
** ** * * *
17578561 GTCGCAGCAGGATCAGCAGCACGTAAAGAGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCC
66 GTAACAGCAGGATCAGCAGCACACAAAGAGGGACCCGACCGATCCCCGACTTGCGCATCCCACCC
17578626 CTCTAGCCGGCTAAGCACCCG-CACGCTCA
131 CTCTAGCCGGCTAAGC-CCCGACACGCTCA
**
17578655 TTTCATCGGTTGGCTTAGGCATATGGAGTTCATTCCTAGTCTAAGATTGGACCGGACTGAGGGTT
1 TTTCATCGGTTGGCTTAGGCATATGGAGTTCATTCCTAGTCTAAGATTGGACCAAACTGAGGGTT
* * * ** *
17578720 GTAATAGCAGGATC-GACAGCACACAGAGGGGGACCC-AGTTGATCCCCGACTTGTGCATCCCAC
66 GTAACAGCAGGATCAG-CAGCACACAAAGAGGGACCCGA-CCGATCCCCGACTTGCGCATCCCAC
* * * *
17578783 CCCTCTGGCCGGCTGAGCGCCGACACGCTCG
129 CCCTCTAGCCGGCTAAGCCCCGACACGCTCA
** * ** * *
17578814 TTTTGTGGGTTGAATTAGGCATATGGAGTTCATTCCCAGTTTAAG
1 TTTCATCGGTTGGCTTAGGCATATGGAGTTCATTCCTAGTCTAAG
17578859 CATATAGAGT
Statistics
Matches: 172, Mismatches: 29, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
158 5 0.03
159 167 0.97
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.25
Consensus pattern (159 bp):
TTTCATCGGTTGGCTTAGGCATATGGAGTTCATTCCTAGTCTAAGATTGGACCAAACTGAGGGTT
GTAACAGCAGGATCAGCAGCACACAAAGAGGGACCCGACCGATCCCCGACTTGCGCATCCCACCC
CTCTAGCCGGCTAAGCCCCGACACGCTCA
Found at i:17578868 original size:26 final size:26
Alignment explanation
Indices: 17578832--17578885 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
17578822 GTTGAATTAG
* *
17578832 GCATATGGAGTTCATTCCCAGTTTAA
1 GCATATAGAGTTCATTCCCAGTCTAA
17578858 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATATAGAGTTCATTCCCAGTCTAA
17578884 GC
1 GC
17578886 TGGAACCGGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATATAGAGTTCATTCCCAGTCTAA
Found at i:17579623 original size:26 final size:26
Alignment explanation
Indices: 17579587--17579639 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17579577 GTTGACTTAG
17579587 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17579613 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17579639 G
1 G
17579640 ATCGGATCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17580513 original size:26 final size:26
Alignment explanation
Indices: 17580483--17580535 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17580473 GTTGACTTAG
17580483 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17580509 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17580535 G
1 G
17580536 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17581407 original size:26 final size:26
Alignment explanation
Indices: 17581376--17581428 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17581366 GTTGACTTAG
*
17581376 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17581402 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17581428 G
1 G
17581429 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17583211 original size:26 final size:26
Alignment explanation
Indices: 17583175--17583227 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17583165 GTTGACTTAG
17583175 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17583201 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17583227 G
1 G
17583228 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17583605 original size:897 final size:897
Alignment explanation
Indices: 17577802--17584448 Score: 8079
Period size: 896 Copynumber: 7.4 Consensus size: 897
17577792 GTTGACTTAG
* * * * **
17577802 GCATACGGAGTTCATTTCCAGTCTAAGATCGGATCGGACTGAGGGTTCCGGCAGCACATGCTACG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** *
17577867 CTC-AGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAG
66 CTCGA-GCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCAGAG
* * *
17577931 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGACGGGGAGGGGGTGTGCGTACATGATG
130 AACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGG-C--CG-GGGGGTGTGCGCACATGATG
17577996 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
191 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
17578061 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGA
256 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
17578126 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGGTTTTAGCTGATTTTTTT
321 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
17578191 TGTGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
386 TATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * *
17578256 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTC
451 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTC
* * * * * * *
17578321 TTGCCATGGAGCTTCATGTGAAGGCTTAAGGCACCATTTTATGAGTTAACAAGCCATAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
17578386 CATTGGCATGCAAAAATATGAAGATGTGACTAAACCCACCTACCACCCTATCGATCCACTGCTTG
581 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* ** * * * *
17578451 CGCATCCCGTCTCTCTTGTTGACGTAATGCCCGCCCG-C-CC-ACTCGTTTCATCGGTTGGCTTA
646 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCGCCTGCTCGTTTCGTCGGTTGGCTTA
** * * * * *
17578513 GAAATATGGAGTTCATTCCT-AGTCTAATATTGGACCAAACTGAGGGTTGTC-GCAGCAGGATC-
711 GGCATACGGAGTTCATTCCTCAGTCTAAGATCGGACCGAACCGAGGGTTG-CAGCAGCAGGATCG
* * * * *
17578575 AGCAGCACGTAAAGAGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTAGCCGGCTAA
775 A-CAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * * * *
17578640 GCACCCGCACGCTCATTTCATCGGTTGGCTTAGGCATATGGAGTTCATTCCTAGTCTAA
839 GCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * * * ** * *
17578699 G-ATTGGACCGGACTGAGGGTTGTAATAGCAGGATCGACAGCACACAGAGGGGGACCCAGTTGAT
1 GCA-T--A-C-G---GA--GTT-CATTCCCA-G-TCTA-AG-A-TCGGA-CCGGACCGAG--GGT
* * * ** * * ** ** *
17578763 CCCCGACTTGTGCATCCCACCCCTCTGGC-CG-GC-TGAGC-GCCGACACGC-TCGTT-TT-GT-
47 ---TG-C--G-GCAGCACA-TGCT-GGGCTCGAGCATGTGCTGGTG-C-CGCATTTTTCTTCATC
* ** * * * ** * ** ** ***
17578820 GGGTTGAATTAGGCATATGGAGTTCATTC-CCAGTTTAAGCAT-ATAGAG-TTCATTCCCAG--T
101 GGG--GCACCA-TCGT-CGGAG--CA-TCGCCAG-AGAA-CCTGACCG-GCGGCATT-GGGGTTT
* * * ** * * * * *
17578880 CTA--AGCTGGAACC-----G-G-AC-C-GAGGGT-TGCGATGGTTGCTGGTACTTGGCCCTTAT
155 CGACGATCGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* *
17578933 ATTGGCCCCCTATTCCTCATCAAACCTCGAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTT
220 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* * *
17578998 ACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTTTGAAATGGCGACACTTTTTTCAAATGGTCACAA
285 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* * * *
17579063 AATCTTGTACACTTCGAATTTTTACCTGAATTTTTTTGTGCATGCCAACAAAAGTACAAGGATCA
350 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCA
* * * * * * * *
17579128 CGCCTTCCAAGTTTGCGACCAAAACCCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAT
415 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAA
* * *
17579193 GTTTCGAAAATCATGAAAAA-A-AAAACGAGTTGTCTTGCCACGAAACTTCATGTGAAGGCTTAA
480 GTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* * *
17579256 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAAAAATATGAAGATGTGC
545 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGC
* *
17579321 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCTGGCGTAGTG
610 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG
* * * * *
17579386 CCCGCCGGCC-CGCTGGCCCACTCATTTCATCGGTTCGCTTAGGCATATGGAGTTCATT--TACA
675 CCCGCCCGCCGC-CT-G----CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCT-CA
* * * * ** * *
17579448 GTCTAAGATCAGACTGGACTGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCTGA
733 GTCTAAGATCGGACCGAACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGA
* * * * * * * *
17579513 TCAATCCTCGGCTTACGCATCCTGCCCGTCTGGCCGGCTGAGCGCCCTCACGTTCGTTTCGTGGG
798 CCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGG
17579578 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
863 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
17579613 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTACGACAGCACATGGTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * * *
17579678 CTCGGGCATGTGCTAGTGCCGCATTTTTCTTTGTCGGGGCACCATCGCCAGAGCATCGTC-GCAG
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCAG-AG
* * * * *
17579742 AACCTGACCAGCGACATTGGGGTTCCGGCGATCGGTGGGGCCGGGGGGTGTGCACACATGATGTG
130 AACCTGACCGGCGGCATTGGGGTTTCGACGATC-G-GGGGCCGGGGGGTGTGCGCACATGATGTG
*
17579807 CGATGGGTGCTGGTACTT-GCCC--ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAA
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
17579869 ACCCCCTTAAAGAGCATTTCAGATTTTATAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
17579934 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTGTAGCTGAATTTTTTTA
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
* * * *
17579999 TGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTATGGGGCCAAAATTCCTTCCGAAAAA
388 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * * * *
17580064 ATTTTAAAAATTCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAATGAGTCGTTTT
453 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * *
17580129 GCCATGAAACTTCACGTTAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCGTAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
17580194 TTGGCATGGAGAAATATGAAGATGTGCCTAAACTCACCTACGACCCTATCGATCCACGGCTTGTG
583 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * * *
17580259 CATCCCATCTCTCTGGCCGACGTAGTGCCTGCCCACGCGCCCGCTCGTTTTGTCGGTTGGCTAAG
648 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC-CGCCTGCTCGTTTCGTCGGTTGGCTTAG
* * * * * *
17580324 GCATACGGAGTTCATTCC-CAATCTAAGATTGGACTGGACCGAGGGTTAG-GGCAGCAGTATC-A
712 GCATACGGAGTTCATTCCTCAGTCTAAGATCGGACCGAACCGAGGGTT-GCAGCAGCAGGATCGA
* * *** * * *
17580386 CCAGCACGTAGAGTGGGACCCGGTAGATCCGCGACTTGCACATCCCGCCCCTCTGGCCGGCTGAG
776 -CAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * *
17580451 CACCCGCACGGTCGTTTCATCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
840 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
17580509 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
17580574 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCA-CTAGGGCACCATCGTCGGAGCATCACCGGAG
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATC-GGGGCACCATCGTCGGAGCATCGCCAGAG
* *
17580638 AACCTGACCGACAGCATTGGGG-TTCTGACGATCGGGGGCCCGGGGGGTGTGCGCACATGATGTG
130 AACCTGACCGGCGGCATTGGGGTTTC-GACGATCGGGGG-CCGGGGGGTGTGCGCACATGATGTG
17580702 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * * *
17580767 ACCCCCTCAAAGAGCATTTGAGATTTGATAGCTTTGCTGCCAGTAGCCATAAAAGTGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
17580832 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTTCACTTCGAGTTTTTAGCTGAATTTTTTTT
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
* * *
17580897 TGCATGCCAACAAAAATACAAGGATCACGTTTACC-AGTTTGGGGCCGAAACTCCTTCCAAAAAA
388 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * *
17580961 ATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCGTAAAAAATAGAAAATGAGTCGTCTT
453 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
17581026 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
17581091 TTGGCATGCAGAAATATGAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACGGCTTGTG
583 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
17581156 CATCCCGTCTCTCTGGCCGGCATAATGCTCGCCCG--TCC-GCTCGTTTCGTCGGTTGGCTTAGG
648 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCGCCTGCTCGTTTCGTCGGTTGGCTTAGG
* * * * *
17581218 CATACGGAGTTTATTCC-CAGTCTAAGATCAGACCAAACCGAGGGTTGCACCAGCAGGATTGACA
713 CATACGGAGTTCATTCCTCAGTCTAAGATCGGACCGAACCGAGGGTTGCAGCAGCAGGATCGACA
* * * * * *
17581282 GCACGTAGAGGGGGACCCGATCGATCCCCAGCTTGTGCATCCCGCCCCTTTGGCCGGCTGAGCGC
778 GCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
*
17581347 CCGCACGCTCGTTTCATTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
843 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
17581402 GCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
17581467 CTCGAGCATGTGCTGGTGCTGCATTTTTCTTTACCGGGGCACCATCG-CTGGAGCATCGCTAGAA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTC-GGAGCATCGCCAGAG
* * *
17581531 AACCTGATCGACGGCATTGGGGTTTCGACGATCGGGGGCCCGGGGGGTGTGCGCACATGATGTAC
130 AACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGG-CCGGGGGGTGTGCGCACATGATGTGC
* * *
17581596 GATGGGTGCTGGTACTTGGACCTTATATTAGCCCCCTATCCCTCATCAAAGCTCGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
17581661 CCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
17581726 GGGACACTTTTTTGAAATGGTCACAAAATCTTGTACACTTCGTGTTTTTAGCTGAATTTTTTAAT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTAT
*** * * *
17581791 GCGCACCAAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAA-TCCTTTCGAAAAA
389 GCATGCC-AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * * *
17581855 ATATTAATAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCTT
453 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * *
17581920 GCCATGAAACTTCACGTGAAGACTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGAA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** * * **
17581985 TTGGCACACAAAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATCGATCCACGGCTTTTG
583 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
17582050 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCACCCGCTCATTTTGTCGGCTGGC
648 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CCG----CCTGCTCGTTTCGTCGGTTGGC
* * * * * *
17582115 TTAGGCGTACGGAGTTCATTCC-CAGTCTAAGATTGGACC-AGACTGAGGGTTAC-GATAGTAGG
708 TTAGGCATACGGAGTTCATTCCTCAGTCTAAGATCGGACCGA-ACCGAGGGTTGCAG-CAGCAGG
* * * * * * **
17582177 ATC-AGCAGCACACAGAGGGGGACCCGGCCAATCC-CTGACTTGCGCATCCCACCCTTCTGGTTG
771 ATCGA-CAGCACGCAGAGGGGGACCCGACCGATCCTC-GGCTTGCGCATCCCGCCCCTCTGGCCG
* * *
17582240 GCTGAGCACCTGCACGCTCGTTCCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
834 GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
17582304 GCATACGGAGTTCATTGCCAGTCAAAGATTGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
17582369 CTCGGGCATGTGCTGGTGTCACATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCAGAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCAGAGA
* * * * ** * *
17582434 GCCTGACTGGCGGTATT-GGGTTTCAACGATCGGGGGGGTGGTGGGGTGTGTGCACATGATGTCC
131 ACCTGACCGGCGGCATTGGGGTTTCGACGATC-GGGGGCCGG-GGGGTGTGCGCACATGATGTGC
* *
17582498 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCGCTATCCCTGATCAAACCTCGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
17582563 CCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
17582628 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTAT
* * * *
17582693 GCTTACGAA-AAAAATACAAGGATCACGTCTACCAAGTTTAGGGGCCAAAACTCCTTCCGAAAAT
389 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGGCCAAAACTCCTTCCGAAAAA
** * *
17582757 ATTTTAAAAAATATCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
453 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
** *
17582822 GCGTTGAAACTTCACGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** **
17582887 TTGGCATGCAGAAATATGAAGATGTGCCTAAACTGACCTACCACCCTATCGATCCATAGCTTGCG
583 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
** * *
17582952 CATCCCGTCTCTCTGGCCGATGTAATGCCCGCCCGCCAGCCTGCTTGTTTCGTCGGTTGGCTTAG
648 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC-GCCTGCTCGTTTCGTCGGTTGGCTTAG
* *
17583017 GCATACGGAGTTTATTCCTC-GTCTAAGATCGGACCGAACCGAAGGTTGCAGCAGCAGGATCGAC
712 GCATACGGAGTTCATTCCTCAGTCTAAGATCGGACCGAACCGAGGGTTGCAGCAGCAGGATCGAC
*
17583081 AGCACGCAGA-GGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCG
777 AGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* *
17583145 CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
17583201 GCATACGGAGTTCATTGCCAGTCTAAGATTGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
17583266 CTCGAGCATGTGCTGGTACCGCATTTTTCTTCACCGGGGAACCATCGTCGGAGCATCGCCAGAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCAGAGA
* *
17583331 ACCTGACTGGCGGCATTGGGGTTTCGACGATCGGGGGTCGGGGGGTGTGCGCACATGATGTGCGA
131 ACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
* *
17583396 TGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCGCTCATCAAACCTCGAGAACTCACACC
196 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
17583461 CCCTTAAAGAGCATTTGAGATTTTACAGGCTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGG
261 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* *
17583526 GACACATTTTTCAAATGGTCACAAAATCTTGTACACTTCGTGTTTTTAGCTGAATTTTTTTATGC
326 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGC
* *
17583591 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCTAAAC-CCTTCCGAAAAGATT
391 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
*
17583655 TTAAAAAATCCCGAACCGCAAAAAGTTTCGAATATCATGAAAAATAGAAAACGAGTCGTCTTGCC
456 TTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* **
17583720 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATCACATTG
521 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
*
17583785 GC-TCGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACA
586 GCAT-GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* ** * *
17583849 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCACTTG-TTCTGTCGGTTGGCTTACG
650 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CCGCCTGCTCGTTTC-GTCGGTTGGCTTAGG
* * * * *
17583913 CATAC-GATGTTCATTCCT-AGTCTAAGATCAGACC-AGACCGAGGATTACAGTAGCAGGATCGG
713 CATACGGA-GTTCATTCCTCAGTCTAAGATCGGACCGA-ACCGAGGGTTGCAGCAGCAGGATCGA
* * * * * * * *
17583975 TAGCATGCAGAGGGGGACCCAACCGAACCCTC-GCTTGTGCATCCCGTCCCTCTGGCTGGGTGAG
776 CAGCACGCAGAGGGGGACCCGACCG-ATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* ** *
17584039 CGCCCGTACGCTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
840 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * **
17584097 GCATACGGAGTTCACTCCCAGTCTAAGATCGGATCGGACAGAGGTTTACGGCAGCACATATTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * ** *
17584162 CTTGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCATCGGAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCAGAGA
* * * *
17584227 ACCTGACCAGCGGCATTGAGGTTCCGACGATCGGGGGGCCGGGGGATGTGCGCACATGATGTGCG
131 ACCTGACCGGCGGCATTGGGGTTTCGACGATC-GGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* * * *
17584292 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAAATCATAG
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
17584357 CCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAATAGCCATTAAAGTGTCTAAAATGG
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
17584422 GGGCACTTTTTTCAAATGGTCACAAAA
325 GGACACTTTTTTCAAATGGTCACAAAA
17584449 ATCCCGAACC
Statistics
Matches: 4943, Mismatches: 669, Indels: 276
0.84 0.11 0.05
Matches are distributed among these distances:
885 4 0.00
886 10 0.00
887 7 0.00
888 3 0.00
889 15 0.00
890 10 0.00
891 10 0.00
892 5 0.00
893 535 0.11
894 262 0.05
895 358 0.07
896 766 0.15
897 682 0.14
898 543 0.11
899 10 0.00
900 199 0.04
901 58 0.01
902 726 0.15
903 2 0.00
904 6 0.00
905 3 0.00
906 165 0.03
907 9 0.00
908 286 0.06
909 6 0.00
910 3 0.00
911 3 0.00
912 6 0.00
913 7 0.00
914 172 0.03
915 3 0.00
918 3 0.00
919 3 0.00
920 7 0.00
921 12 0.00
922 18 0.00
923 3 0.00
924 9 0.00
925 10 0.00
926 4 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (897 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCAGAGA
ACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
TTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCAT
ACGGAGTTCATTCCTCAGTCTAAGATCGGACCGAACCGAGGGTTGCAGCAGCAGGATCGACAGCA
CGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:17584107 original size:26 final size:26
Alignment explanation
Indices: 17584071--17584123 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17584061 GTTGACTTAG
*
17584071 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCACTCCCAGTCTAA
*
17584097 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACAGAGTTCACTCCCAGTCTAA
17584123 G
1 G
17584124 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCACTCCCAGTCTAA
Found at i:17584898 original size:26 final size:26
Alignment explanation
Indices: 17584862--17584913 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
17584852 CTGACTTAGA
17584862 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
17584888 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
17584914 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:17585596 original size:159 final size:157
Alignment explanation
Indices: 17585307--17585683 Score: 513
Period size: 159 Copynumber: 2.4 Consensus size: 157
17585297 CCCACCCGCT
* * * * *
17585307 CGCCCGCCCTCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
1 CGCCCGCACGCTCGTTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* *** *
17585372 GCAGATTGAGGGTTGCAGTAGCAAGATCGACAACACGCAGAGGGGGACCTGACCGATCCCCGACT
66 CCAGACCAAGGGTTGCAGTAG--AGATCGACAACACACAGAGGGGGACCTGACCGATCCCCGACT
*
17585437 TGCGCATCCCGCCCCTCTGGCTGGCTGAG
129 TGCGCATCCCGCCCCTCTGGCCGGCTGAG
* *
17585466 CGCCCGCACGCTCGTTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCCCGTCTAAGATTGGA
1 CGCCCGCACGCTCGTTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * * *
17585531 CCAGGCCAAGGGTTTCGACAGTAG-GATCGGCAACACATAGAGGGGGACCTGGCCGATCCCCGAC
66 CCAGACCAAGGG-TT-G-CAGTAGAGATCGACAACACACAGAGGGGGACCTGACCGATCCCCGAC
* *
17585595 TTGTGCATCCCGCCTCTCTGGCCGGCTGAG
128 TTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* *
17585625 CGCCCGCGCGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
1 CGCCCGCACGCTCGTTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
17585684 CGTACGGAGT
Statistics
Matches: 193, Mismatches: 22, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
159 184 0.95
160 2 0.01
161 1 0.01
162 6 0.03
ACGTcount: A:0.19, C:0.30, G:0.29, T:0.23
Consensus pattern (157 bp):
CGCCCGCACGCTCGTTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
CCAGACCAAGGGTTGCAGTAGAGATCGACAACACACAGAGGGGGACCTGACCGATCCCCGACTTG
CGCATCCCGCCCCTCTGGCCGGCTGAG
Found at i:17585696 original size:26 final size:26
Alignment explanation
Indices: 17585660--17585709 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
17585650 GACTTAGGCA
17585660 TACGGAGTTCATTCCCAGTCTAAGCG
1 TACGGAGTTCATTCCCAGTCTAAGCG
17585686 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
17585710 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCG
Found at i:17587494 original size:26 final size:26
Alignment explanation
Indices: 17587458--17587510 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17587448 GTTGACTTAG
*
17587458 GCATACAGAGTTCATTCCCAGTTTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17587484 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17587510 G
1 G
17587511 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17588270 original size:26 final size:26
Alignment explanation
Indices: 17588231--17588283 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17588221 GTTGACTTAG
17588231 GCATACAGAATTCATTCCCAGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
* *
17588257 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
17588283 G
1 G
17588284 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAATTCATTCCCAGTCTAA
Found at i:17589065 original size:26 final size:26
Alignment explanation
Indices: 17589029--17589078 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
17589019 GACTTAGGCA
*
17589029 TACGAAGTTCATTCCTAGTCTAAGCG
1 TACGAAGTTCATTCCCAGTCTAAGCG
17589055 TACGAAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
17589079 ATTGGACTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCG
Found at i:17589955 original size:26 final size:26
Alignment explanation
Indices: 17589919--17589971 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17589909 GTTGACTTAG
17589919 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
*
17589945 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
17589971 G
1 G
17589972 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:17591751 original size:26 final size:26
Alignment explanation
Indices: 17591722--17591774 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17591712 GTTGACTTAG
* *
17591722 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17591748 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17591774 G
1 G
17591775 ATTGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17592448 original size:901 final size:902
Alignment explanation
Indices: 17588954--17593587 Score: 6312
Period size: 901 Copynumber: 5.1 Consensus size: 902
17588944 GGACCTGGCT
** * *
17588954 GATCCCCGACTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCGCGCTCGTTTTGTGGGTT
1 GATCCCCGACTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTT
* *
17589019 GACTTAGGCATACGAAGTTCATTCCTAGTCTAAGCGTACGAAGTTCATTCCCAGTCTAAGATTGG
66 GACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACG-AGTTCATTCCCAGTCTAAGATTGG
** * * * *
17589084 ACTGGACTGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTT
130 ACCAGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
* * * * * * * * * * *
17589149 GCCGAGGTACCACCGTCGGAGCATCATCGGAGAACATAACCGACGGCATTGAGGTTCCGGCGATT
195 GTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTCACCGACGGCATTGGGGTTCCGACGATC
* *
17589214 GGGGGGGCCAGGTGGGGGTATGCGCACATGATGTGCGATGGGTGGTGGTACTTGGCCCTTATATT
260 GGGGGGGCC-GG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
*
17589279 GGCCCCCTATCCCTCATCAAACCTGGAGAACTCAC-ACTCCCTTAAAGAGCATTTGAGATTTTAC
323 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAAC-CCCTTAAAGAGCATTTGAGATTTTAC
*
17589343 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAA
387 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* *
17589408 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAGACAAGGATCATG
452 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
*
17589473 TCTACCAAGTTTGGGGACAAAAA-TCCTTCCAAAAAAATTTTAAAAAAT-CTCGAA-C-C----A
517 TCTACCAAGTTTGGGG-CAAAAACTCCTTCCGAAAAAATTTTAAAAAATCCT-GAACCGCAAAAA
*
17589530 -----G-AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAGTTCACGTGAAGGCTTAA
580 GTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* *** *
17589589 GGAACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATAAAGATGTGC
645 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGC
* * *
17589654 CTAAACTCACCTACCA-CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTG
710 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCTTCCCGTCTCTCTGGCCGGCGTAGTG
* * *
17589718 CCCGCCCACTCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
775 CCCGCCCGCCCGCACGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * * * * * ** * *
17589783 TAAGATTGGAGA-C-GATCGAGGGTTGCAGTAGCAAGATCGGCAAAACGTAGAGGGGGACCCGGT
840 TAAGA-T-CAGATCGGA-CGAGGGTTGCGGCAGCAGGATCAGTAGCACGCAGAGGGGGACCCGAT
17589846 C
902 C
* * * * *
17589847 GATCCCCGACTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCACTCGCACGCTCCTTTTGTGGGTT
1 GATCCCCGACTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTT
* * *
17589912 GACTTAGGCATACGGAGTTAATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
66 GACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATAC-GAGTTCATTCCCAGTCTAAGATTGG
* * ** * * *
17589977 ACCGGACCGAGGGTTGCAACAGCACATGCTGGGTTCGAGCATGTGCTGGTGCCGCATTTTTCTAC
130 ACCAGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
* ** * * *
17590042 GTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGACATTGGGGTTCCGGCGATC
195 GTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTCACCGACGGCATTGGGGTTCCGACGATC
* * * *
17590107 GGGGGGGCC-GAGGGGTGTGCGTACATGATGTGCAATGGGTGCTAGTACTTGGCCCTTATATTGG
260 GGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* *
17590171 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGG
325 CCCCCTATCCCTCATCAAACCTCGAGAACTCACAACCCCTTAAAGAGCATTTGAGATTTTACAGG
* * * * * *
17590236 TTTGCTGCTAGAAGCCATTAAAGTTTCTAAAATGGGGACTCTTTTTTCAAATGATCACAAAATCT
390 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* **
17590301 TGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATATCT
455 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * * * * *
17590366 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATATTAACAAATCCCGAAACGTAAAAAGTTTC
520 ACCAAGTTTGGGGCAAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTC
* * *
17590431 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGCCTTAAGGGAC
585 GAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* * * * *
17590496 CATTGTATGAATTTACAGGCCATAAAAATGGTAGTGGCATGCAGAAATATGAAGATGTGCCCAAA
650 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAA
* ** * *
17590561 CCCACCTAACACCCTATCGATCCATAGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTG-
715 CCCACCTACCACCCTATCGATCCACGGCTTGCGCTTCCCGTCTCTCTGGCCGGCGTAGTGCCCGC
* * * *
17590625 --G-CCGCCCGTCCGCTCGTTTCGTCGGTTAGCTTAGGCATACGGAGTTCATTCCCAGTTTAAGA
780 CCGCCCGCACGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * **
17590687 TCAGATCGGACGAGGGTTGCGGCAGCAGGAT-TGACAGCACGTAGAGGGGGACCTGGCC
845 TCAGATCGGACGAGGGTTGCGGCAGCAGGATCAG-TAGCACGCAGAGGGGGACCCGATC
* * * * * ** * * * *
17590745 AATCCCAGACTTTCGCATCCCGCCCCTCTAGCCGGTTGAGTTCCCGAACGCTCATTTCGTGGTTT
1 GATCCCCGACTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTT
* * **
17590810 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAGACGAAGTTCATTCCCAGTCTAAGATCAG
66 GACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACG-AGTTCATTCCCAGTCTAAGATTGG
* *
17590875 ACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTC
130 ACCAGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
* * *
17590940 GTCGGGGCACCATCACCGAAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC
195 GTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTCACCGACGGCATTGGGGTTCCGACGATC
*
17591005 GGGGGGGCCGGGGGTGGGGTGTGCGCACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATAT
260 GGGGGGGCC--GGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* * *
17591070 TGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGATATTTTAC
322 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAACCCCTTAAAGAGCATTTGAGATTTTAC
* *
17591135 AGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTTAAATGGTCACAAAA
387 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
*
17591200 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACGAGGATCACG
452 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
* * * * *
17591265 TCTA--ATATTTTGGGGCCAAAACTCCTTCC-AAAAAAATTTAAAAAATTCTTGAACCACAAAAA
517 TCTACCA-AGTTTGGGGCAAAAACTCCTTCCGAAAAAATTTTAAAAAA-TCCTGAACCGCAAAAA
* *
17591327 GTTTTGAAAATCATGAAAAATAGTAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
580 GTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* *
17591392 GGGACCATTGTATGAATTTACAAGCCATAAAAATTGCATTGGCATGTAGAAATATGAAGATATGC
645 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGC
* * * *
17591457 CTAAACCAACCTACCGCCCTATCGATCCACAGCTTGCGCTTCCCGTCTCTCTGGCCGGCGTTGTG
710 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCTTCCCGTCTCTCTGGCCGGCGTAGTG
* *
17591522 CCCGCTCGCCCGCACGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTC
775 CCCGCCCGCCCGCACGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * * * *
17591587 TAAGATCAGACCAGACAGAGGGTTGTGGCAGCAGGATCAGTATCACGCAG-GGGGGACCCAATC
840 TAAGATCAGATCGGAC-GAGGGTTGCGGCAGCAGGATCAGTAGCACGCAGAGGGGGACCCGATC
* * * **
17591650 GATCCCCGGCTTACGCATCCCTCCCCTCTGGCCGGCTGAGCGCTCGCATTCTCGTTTCT-TGGGT
1 GATCCCCGACTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT-TGTGGGT
17591714 TGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTG
65 TGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATAC-GAGTTCATTCCCAGTCTAAGATTG
* * * * * * *
17591779 GATCAGATTGAGTGTTTCGGCAACACATGCTGGGCTCGGGCATGTGCTAGAGCCGCATTTTTCTT
129 GACCAGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
* * * *
17591844 CGTCTGGGCACCATCGCCAGAGCATCGTCGAAGAACTTCACCGACGGCATTGGGGTTCCGACGAT
194 CGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTCACCGACGGCATTGGGGTTCCGACGAT
* * * *
17591909 C-GGGGGGTC-GGGGGGTGTGCACACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTT
259 CGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* * * * * * *
17591972 ACCCCCTATCCCTCATGAAGCCTCAATAACTCACAACCCTTTACAGAGCATTTGAGATTTTACAG
324 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACAACCCCTTAAAGAGCATTTGAGATTTTACAG
* * * *
17592037 GTTTGCTGCCGGTAGCCATCAAACTGTCTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATC
389 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * *
17592102 TTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAAAAGGATCACGTC
454 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* *
17592167 TACCAAGTTTGGGGCAAAAACTCCGTCCGAAAAAATTTTAAAAAATCCTGAATCGCAAAAAGTTT
519 TACCAAGTTTGGGGCAAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTT
* * * *
17592232 TGAAAATCATGAAAAATATAAAATGAGTCGTCTTGCCATGAAACTTGACGTGAAGGCTTAAGGGA
584 CGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* * **
17592297 CCATTCTATGAATTTACAAGCCATAAAAATGACATTGGCACATAGAAATATGAAGATGTGCCTAA
649 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAA
* * *
17592362 ACCCACCTACCGCCCTATCGATCCACGGCTTGCGCTTCCCGTCTCTCTGGCCGACGTTGTGCCCG
714 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCTTCCCGTCTCTCTGGCCGGCGTAGTGCCCG
*
17592427 CCCGCCCGCACGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTGAG
779 CCCGCCCGCACGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * *
17592492 ATCAGAGCGGACAGAGGGTTGTGGCAGCAAGATCAGTAGCACGCAG-GGGGGACCCGACC
844 ATCAGATCGGAC-GAGGGTTGCGGCAGCAGGATCAGTAGCACGCAGAGGGGGACCCGATC
* * **
17592551 GATCCCCGACTTACGCATCCCGCCCCTCTGGCCGACTGAGCGCTCGCATTCTCGTTTTGTGGGTT
1 GATCCCCGACTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTT
*
17592616 GACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACAGAGTTCATTCCTAGTCTAAGATTGG
66 GACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATAC-GAGTTCATTCCCAGTCTAAGATTGG
* * * * * *
17592681 ATCAGATTGAGGGTTGCGGCAACACATGCTGGGATCAGGCATGTGCTGGAGCCGCATTTTTCTTC
130 ACCAGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
* * * *
17592746 GTCGGGGCACCATCGCCGGAGCATTGCCGAAGAACTTCACCGACGGCATTGGGGTTCCGACGATC
195 GTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTCACCGACGGCATTGGGGTTCCGACGATC
* * * * **
17592811 AGGGGGGTCGGGGGGGTGTGCACACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTTA
260 GGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* * * * * *
17592876 CCCCCTATCCCTCATGAAGCCTCAATAACTCACAACCCTTTACAGAGCATTTGAGATTTTACAGG
325 CCCCCTATCCCTCATCAAACCTCGAGAACTCACAACCCCTTAAAGAGCATTTGAGATTTTACAGG
* * * *
17592941 TTTGCTGCCGGTAGCCATCAAACTGTCTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
390 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* *
17593006 TGTACACTTCGAATTTTTAGCTGAATTTTTTTGTGCATGCCAA-ATAAAATAAAAGGATCACGTC
455 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA-AAAATACAAGGATCACGTC
* *
17593070 TACCAAGTTTGGGGCAAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCCCAAAAAGTTT
519 TACCAAGTTTGGGGCAAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTT
* *
17593135 CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
584 CGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* *
17593200 CTATTGTATGAATTTACAAGGCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAA
649 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAA
* *
17593265 ACCCACCTACCACCCTATCGATCCACGGCTTGCG-TATCCCGTCTCTCTGACCGGTGTAGTGCCC
714 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCT-TCCCGTCTCTCTGGCCGGCGTAGTGCCC
* * * *
17593329 GCCCGCCCGCCCGCTCGCTCATTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
778 GCCCGCCCGCACGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
17593394 GATCGGATCGGACGAGGGTTACGGGTAGCAGGATCGGTAGCACACAGAGGGGGACCCGATC
843 GATCAGATCGGACGAGGGTTGC-GGCAGCAGGATCAGTAGCACGCAGAGGGGGACCCGATC
* * * * * * **
17593455 AATCCCTGACTTATGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGTATGCTCGTTTCATGGGTT
1 GATCCCCGACTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTT
* *
17593520 GACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGG
66 GACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATAC-GAGTTCATTCCCAGTCTAAGATTGG
17593585 ACC
130 ACC
17593588 GGTCCGAGGG
Statistics
Matches: 3360, Mismatches: 336, Indels: 79
0.89 0.09 0.02
Matches are distributed among these distances:
889 5 0.00
890 268 0.08
891 4 0.00
893 236 0.07
894 1 0.00
896 1 0.00
897 5 0.00
898 277 0.08
899 58 0.02
900 240 0.07
901 795 0.24
902 389 0.12
903 620 0.18
904 138 0.04
905 295 0.09
906 27 0.01
907 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (902 bp):
GATCCCCGACTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTT
GACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGAGTTCATTCCCAGTCTAAGATTGGA
CCAGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG
TCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTCACCGACGGCATTGGGGTTCCGACGATCG
GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
CCCCTATCCCTCATCAAACCTCGAGAACTCACAACCCCTTAAAGAGCATTTGAGATTTTACAGGT
TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
CCAAGTTTGGGGCAAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCG
AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAAC
CCACCTACCACCCTATCGATCCACGGCTTGCGCTTCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
CGCCCGCACGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
CAGATCGGACGAGGGTTGCGGCAGCAGGATCAGTAGCACGCAGAGGGGGACCCGATC
Found at i:17592652 original size:26 final size:26
Alignment explanation
Indices: 17592623--17592675 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17592613 GTTGACTTAG
*
17592623 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
17592649 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
17592675 G
1 G
17592676 ATTGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:17593557 original size:26 final size:26
Alignment explanation
Indices: 17593527--17593579 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17593517 GTTGACTTAG
* *
17593527 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
17593553 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
17593579 G
1 G
17593580 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:17595308 original size:25 final size:25
Alignment explanation
Indices: 17595274--17595324 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 25
17595264 GTTGACTTAG
17595274 GCATACGGAGTTAATT-CCAGTCTAA
1 GCATACGGAGTTAATTCCCA-TCTAA
*
17595299 GCATACGGAGTTCATTCCCATCTAA
1 GCATACGGAGTTAATTCCCATCTAA
17595324 G
1 G
17595325 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 21 0.88
26 3 0.12
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (25 bp):
GCATACGGAGTTAATTCCCATCTAA
Found at i:17596805 original size:902 final size:897
Alignment explanation
Indices: 17594605--17612183 Score: 21860
Period size: 902 Copynumber: 19.6 Consensus size: 897
17594595 NNNNNNNGAT
* * *
17594605 GGTGGTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGGAGAACTCACACTCC
1 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
*
17594670 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGA
66 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
*
17594735 CAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAG
131 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* *
17594799 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGACAAAAATCCTTCCAAAAAAATTTT
196 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA-TTT
* * *
17594864 AAAAAATCTCGAA-C-C----A-----G-AAATCATGAAAAATAGAAAACGATTCGTCTTGCCAT
260 AAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
* *
17594917 GAAAGTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
325 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
** * *
17594982 ACACAGAAATATAAAGATGTGCCTAAACTCACCTACCA-CCTATCGATCCACGGCTTGCGCATCC
390 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* *
17595046 CGTCTCTCTGGCCGGTGTAAGTTGGCCCGCCCACTCACTCGCTCCGCTCGTTTCGTCGGTTGGCT
455 CGTCTCTCTGGCCGGCGT-AG-T-GCCCG--C-CGC-C-CGC-CCGCTCGTTTCGTCGGTTGGCT
* * * * *
17595111 TAGGCATACGGAGTTCATGTCCCAGTCTAAGATTGGAGA-C-GATCGA-GGTTGCAGTAGCAAGA
511 TAGGCATACGGAGTTCAT-TCCCAGTCTAAGA-T-CAGACCGGACCGAGGGTTGCGGCAGCAGGA
* *
17595173 TCGGCA-AACG-AGTAAGAGGGGACCCCG-TCGAT-CCCGACTTGCGCATCCCGCCCCCTCTGGC
573 TCGGTAGCACGCAG--AG-GGGGA-CCCGATCGATCCCCGACTTGCGCATCCCG-CCCCTCTGGC
* * * * * *
17595234 TGGCTGAGCACTCGCACGCTCCTTTTGTGGGTTGACTTAGGCATACGGAGTTAATT-CCAGTCTA
633 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * **
17595298 AGCATACGGAGTTCATTCCCA-TCTAAGATCGGACCGGACCGAGGGTTGCAACAGCACATGCTGG
698 AGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGG
* * * * **
17595362 GTTCGAGCATGTGCTGGTGCCGCATTTTTCTACGTCGGGGCACCATCGTCGGAGCATCACCGGAG
763 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAG
* * * * *
17595427 AACCTGACCGACGACATTGGGGGTCCGGCGATCGGGGGGGCC--GAGGGTGTG-GTACATGATGT
828 AACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGT
*
17595489 GCAATG
892 GCGATG
*
17595495 GGTGCTAGTACTTGG-CCTTATATTGGCCCCCTATTCCCTCATCAAA-CTCGAGAACTCACACCC
1 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA-TCCCTCATCAAACCTCGAGAACTCACACCC
* * * * *
17595558 CCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCTAGAAGCCATTAAAGTTTTCTAAAATGGG
65 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG-TGTCTGAAATGGG
* * *
17595623 GACTCTTTTTTCAAAATGATCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTTGT
129 GACACTTTTTTC-AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGT
** *
17595688 GCATGCCAACAAAAATACAAGGATCATATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
192 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
* * * **
17595753 TATTAACAAATCCCGAAACGTAAAAAGTTTCAAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
257 T-TTAAAAAATCCCGAACCGCAAAAAGTTT-TGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * *
17595818 GCCATGAAACTTCACGTGAAGCCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGTA
320 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * **
17595883 GTGGCATGCAGAAATATGAAGATGTGCCCAAACCCACCTAACACCCTATCGATCCATAGCTTGCG
385 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
17595948 CATCCCGTCTCTCTGGCCGGCGTAGTGCCTGGCCGCCCGTCCGCTCGTTTCGTCGGTTAGCTTAG
450 CATCCCGTCTCTCTGGCCGGCGTAGTGCC-CGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * **
17596013 GCATACGGAGTTCATTCCCAGTTTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATTGACA
514 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGTA
* * ** * * * * * **
17596078 GCACGTAGAGGGGGACCTGGCCAATCCCAGACTTTCGCATCCCGCCCCTCTAGCCGGTTGAGTTC
579 GCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * * *
17596143 CCGAACGCTCATTTCGTGGTTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAGACGAAG
644 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAG
* * *
17596208 TTCTTTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCTGCACATGCTGGGCTCGGGCATG
709 TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* * *
17596273 TGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGAAGCATCGTCGGAGAACCTGACCGA
774 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGA
*
17596338 CGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGTGGGGTGTGCGCACATGATATGCGATG
839 CGGCATTGGGGTTCCGACGATCGGGGGGCC--GGG-GGGGTGTGCGCACATGATGTGCGATG
*
17596400 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCC
1 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
17596465 CTTAAAGAGCATTTGATATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGA
66 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
*
17596530 CACTTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
131 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* ** **
17596595 GCCAACAAAAATACGAGGATCACGTCTAATATTTTTGGGGCCAAAACTCCTTCCAAAAAAATTTA
196 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTA
* ** * * *
17596660 AAAATTCTTGAACCACAAAAAGTTTGGAAAATCATGAAAAAATAGAAAACGAGTCGTCTTGCCAT
261 AAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTG-AAAAATAGAAAACGAGTCGTCTTGCCAT
*
17596725 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATTGCATTGGC
325 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * * * *
17596790 ATGTAGAAATATGAAGATATGCCTAAACCAACCTACCGCCCTATCGATCCACAGCTTGCGCTTCC
390 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
*
17596855 CGTCTCTCTGGCCGGCGTTGTGCCCGCTCGCCCGCACGCCCGCTCGTTTCGTCGGTTGGCTTAGG
455 CGTCTCTCTGGCCGGCGTAGTGCCCGC-CG--C-C-CGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * *
17596920 CATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACAGAGGGTTGTGGCAGCAGGATCAGTAT
515 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGTAG
* * * * * *
17596985 CACGCAGGGGGGGACCCAATCGATCCCCGGCTTACGCATCCCTCCCCTCTGGCCGGCTGAGCGCT
580 CACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
** * *
17597050 CGCATTCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATAC-AGAG
645 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA-AG
* * ** * *
17597114 TTCATTCCCAGTCTAAGATTGGATCAGATTGAGGGTTTCGGCAACACATGCTGGGCTCGGGCATG
709 TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* * * * * * *
17597179 TGCTAGAGCCGCATTTTTCTTCGTC-TGGCACCATCGCCAGAGCATCGTCGAAGAACTTCACCGA
774 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGA
* * *
17597243 CGGCATT-GGGTT-CGACAATCGGGGGGTCGGCGGGGGTGTGCACACATGATGTGCGATG
839 CGGCATTGGGGTTCCGACGATCGGGGGGCCGG-GGGGGTGTGCGCACATGATGTGCGATG
* ** * * * * *
17597301 GGTACTGGTACTTGGCCCTTATATTTACCCCCTATCCCTCATGAAGCCTCAATAACTTCACAACC
1 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC-TCACACCC
* * * * * *
17597366 CTTTACAGAGCATTTGAGATTTTACA-GTTTGCTGCCGGTAGCCATCAAACTGTCTGGAATGGGG
65 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
*
17597430 ACACTTTTTTCAAATGGTCAC-AAATCTTGTACACTTTGAGTTTTTAAGCTGAATTTTTTTTGTG
130 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT-AGCTGAA-TTTTTTTGTG
* * * *
17597494 CATGCCAAAAAAAATAAAAGGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCGTCCGAAAAAA
193 CATGCCAACAAAAATACAA-GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAA
* * * * * *
17597559 TTTTAAAAAATCCTGAATCGC-AAAAGTTTTGAAAATCATGAAAAATATAAAATGAGTCGTCTTG
256 ATTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* * *
17597623 CCATGAAACTTGACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATAAAAATGACAT
321 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*** *
17597688 TGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCGCCCTATCGATCCACGGCTTGCGC
386 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * *
17597753 TTCCCGTCTCTCTGGCCGACGTTGTGCCCGCCCGCCCGCACGCCCGCTCGTTTCGTCGGTTGGCT
451 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CCG--C-C-CGCCCGCTCGTTTCGTCGGTTGGCT
* * * * * *
17597818 TAGGCATACGGAGTTCATTCCCAGTCTGAGATCAGAGCGGACAGAGGGTTGTGGCAGCAAGATCA
511 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCG
* * * * *
17597883 GTAGCACGCAGGGGGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGACTGAG
576 GTAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* ** * *
17597948 CGCTCGCATTCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATAC-
641 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * ** * * *
17598012 AGAGTTCATTCCTAGTCTAAGATTGGATCAGATTGAGGGTTGCGGCAACACATGCTGGGATCAGG
706 A-AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* * * * * *
17598077 CATGTGCTGGAGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATTGCCGAAGAACTTCA
770 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGA
* *
17598142 CCGACGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGGTGTGCACACATGATGTGCGATG
835 CCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATG
* ** * * * * *
17598206 GGTACTGGTACTTGGCCCTTATATTTACCCCCTATCCCTCATGAAGCCTCAATAACTCACAACCC
1 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * * * * *
17598271 TTTACAGAGCATTTGAGATTTTACAGGTTTGCTGCCGGTAGCCATCAAACTGTCTGGAATGGGGA
66 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
*
17598336 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAAGCTGAATTTTTTTGTGCA
131 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT-AGCTGAATTTTTTTGTGCA
* * *
17598401 TGCCAA-ATAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCCGAAAAAATT
195 TGCCAACA-AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAAAT
** * **
17598465 TTAAAAAATCTTGAACCCCAAAAAGTTTCAAAAATCGTGAAAAATAG-AAACGAGTCGTCTTGCC
258 TTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
*
17598529 ATGAAACTTCACGTGAAGGCTTAAGGGACTATTGTATGAATTTACAAGGCCATAAAAATGGCATT
323 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA-GCCATAAAAATGGCATT
*
17598594 GGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
387 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
*
17598659 TCCCGTCTCTCTGGCCGGCGTAGTG-CCGCCCGCCCGCCCGCTCGCTCATTTCGTTGGTTGGCTT
452 TCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CCGCCCGCCCGCTCG----TTTCGTCGGTTGGCTT
* * * *
17598723 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGGTAGCAGGATCGG
512 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGG
* * * ** *
17598788 TAGCACACAGAGGGGGACCCGATCAATCCCTGACTTATGCATCCTGCCCCTCTGGCCGGCTGAGC
577 TAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * * *
17598853 GCCCGTATGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGCATAC-A
642 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA
* * * * *
17598917 GAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTACGACAGCACATGCTAGGCTCGGGC
707 -AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * *
17598982 ATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACTATCGCTGGAGCATCGCCGGAGAACCTGAC
771 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGAC
* * *
17599047 C-AGCGGCATTGGGGTTCCGGCGATCAGGGGGGCC-GGGGGGTGTGCACACAGGATGTGCGATG
836 CGA-CGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATG
*
17599109 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAAAACTCACACCCC
1 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
17599174 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTAAAATGGGGA
66 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
*
17599239 CACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
131 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * *
17599304 GCCAACAAAAATACGAGGATCACGTCTA-AAATTTTGGGGCCAAAACTCCTTCCAAAAAATTTTT
196 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA-ATTT
* * **
17599368 AAAAAATCCCGAATCGCAAAAAATTTCCAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
260 AAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
*
17599433 GAAACTTCACGTGAACGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
325 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* *
17599498 ATGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCC
390 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
*
17599563 CGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCACTAGTTTCGTCGGTTGGCTTAGG
455 CGTCTCTCTGGCCGGCGTAGTGCCCG-CCGCCCGCCCGCT--C--GTTTCGTCGGTTGGCTTAGG
* * * ** *
17599628 CATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGGA-TGAGGGTTGCGATAGCAGGATCGATA
515 CATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GGACCGAGGGTTGCGGCAGCAGGATCGGTA
* * * * * * * * * * * *
17599692 GGACACAAAGGGGGACCCGATCGTTCCCCGGCTTACTCATCCTGCCCCACTGGCCGTCTCAGTGC
579 GCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * *
17599757 CCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAAGCATAC-AGA
644 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA-A
* * ** * * *
17599821 GTTCATTCCCAGTCTAAAATCAGACTGGACTGTGGGTTGTGGCAGCACATGCTGGGCTCGGGCAT
708 GTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
* * * ** *
17599886 GTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCACCGAAGAACCTGACCG
773 GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCG
* * * * * *
17599951 ACGACATTGGGGTTCAGACGATTGGGGGGGCCGAGGGGGTGTGCGCACAGGATGTGTGATG
838 ACGGCATTGGGGTTCCGACGA-TCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATG
* * **
17600012 GGTGCTAGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCACACCTCGAGAACTCACACCGT
1 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * * *
17600076 CTTAAAGAGCATTAGAGATTTTATAGGTTTGCTG-CAGTAGCGATTAAAGTGTTTGAAATGGGGA
66 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* *
17600140 CATTTTTTTCAAATGGTCACAAAATCTT-TACACTTCGAGTTTTTAGCTGAATTTTTTTGTG-AC
131 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * *
17600203 GCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTTCAAAAAAATTTG
196 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTA
* * * * * * *
17600268 AAAAATCCCAAACCGTAAAAAGTTTTGAAAGTCATGAAAAAAAGAAAACGAGTCATCCTGCCATG
261 AAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
17600333 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
326 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * *
17600398 TGCAGAAATATGAAGATGTGCCCAAAGCCACCTACCAGCCTATCGATCCACGGCTTGCGCATCCC
391 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
*
17600463 GTCTCTCTGGCCGGCGTAGTGCCCGCCAGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATAC
456 GTCTCTCTGGCCGGCGTAGTGCCCGCC-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
*
17600528 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGTAGCACGC
520 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGC
* * * * * *
17600593 AGAGGGGGACCCGACCGATCCCCGACTTGCACATCCCACCCCTCTGGTCGGCTGAGTGCCTGCAC
585 AGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* * * * *
17600658 GCTTGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTATAAGCATACGGAGTTCGTT
650 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATT
* * * *
17600723 CCCAGCCTAAGATCAGACC-GAACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGAGCTG
715 CCCAGTCTAAGATCGGACCAG-ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * * * * * * *
17600787 GTGCGGGATTTTTATTCGTCGAGGCATCATCACCGGAGCGTCG-CTGGAGAACCTGACCGGCGGC
779 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTC-GGAGAACCTGACCGACGGC
* * * *
17600851 ATTGGGGTTCCGACGATCGTGGGCCCGAGGGGGTGTGCGCACATGATGTGTGATG
843 ATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATG
*
17600906 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCC
1 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
17600971 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAATTGGGGA
66 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
**
17601036 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGTGT
131 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * *
17601101 GCCAAAAAAAAATACAAGGATCACGTCTA-CAAGGTTTAGGGCCAAAACTCCTTCCGAAAAATTA
196 GCC-AACAAAAATACAAGGATCACGTCTACCAA-GTTTGGGGCCAAAACTCCTTCCAAAAAAAT-
* ** *
17601165 TTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCC
258 TTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
* *
17601230 ATGAATCTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCATTG
323 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
** **
17601295 GCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTATGCAT
388 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * ** *
17601360 CTCGTCTCTCTGGCCGGCGTAGTG--C-CTGCCCGCCCACTCAATTCATCGGTTGGCTTAGGCAT
453 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * * * * * * * *
17601422 ACGAACTTCATTCCCAGTCTAAGATCAGATCAGATCGAGTGATGTGGCAGTAAGATCGGTAGCAT
518 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCAC
* * ** **
17601487 GCAGAGGGGGACCCGGTTGATCCCCGGGTTGCGCATCCCGCCCCTCTGGCCGATTGAGCGCCCGC
583 GCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
* * *
17601552 ACGGTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
648 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCA
* * * * * * *
17601617 TTCCCAGTCTAAGATCGGATC-GAACCGAAGGTTGTGGTAGCAGATGCTGGACTCAGGCATGTGC
713 TTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGC
* * * *
17601681 TGGTGCCGCATTTTTCTTTGCCAGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGG
777 TGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGG
* * *
17601746 CATTGGGGTTCCGACGATCGGAAGGG-CTGGGGGGTGTGCGCACATGATGTGTGATG
842 CATTGGGGTTCCGACGATCGG-GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATG
* * ** *
17601802 GGTGCTGGTATTTGGCCCTTATATTGGCCCCCTAACCCTCATCAAACCTTAAGAACTCATACCCC
1 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * * *
17601867 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACTAATAGCCATTAAAATGTCTGAAATGGGGA
66 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * *
17601932 CACTTTTTTCAAATGGTCACAAAATCTTGTTCACTTCGATTTTTTTGCTGAATTTTTTTGTGCAT
131 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * * *
17601997 GCCAA-AAAAATACATGGATCACGTCTACAAAGTTTGGGGCAAAAACACCTTCCGAAAAAATTTG
196 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTT-
* * * *
17602061 AAAAAATCCCAAACCCCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGTCCTGCCAT
260 AAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
17602126 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
325 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
** *
17602191 ACACAGAAATATGAAGATGTGCTTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
390 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* *
17602256 CGTCTCTCTGGCAGGCGTAGT--AC-CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
455 CGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
** * * * * * * * *
17602318 AAACTTTATTCCCAGTCTAAAATCAGATCGGATCGAGGGTTGTGGCAGCAAGATTGGTAGCACGC
520 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGC
* * * * * *
17602383 ACAGGGGGGCCCGA-CCATCCCCAAGTTGCGCATCCCGCCCCTTTGGCCGGCTGAGCGCCCGCAC
585 AGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
*
17602447 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
650 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATT
* * * * * * *
17602512 CCCAGTCTAAGATCGAACCCGATCGAGGGTTACGGTAGCAGATGCTGGGCTCAGGCATGTGCTGG
715 CCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* ** * * * * * *
17602577 TGTCATATTTTTCTTTGCCAGGGCACCATCGTCGGAGCATCGTCGGAGAACTTGACTGACGGCAT
780 TGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCAT
* **
17602642 TGGGGTTCCGACGATCGGGAGGGCC-GGGGGGCGTGCGCACATGATGTTTGATG
845 TGGGGTTCCGACGATCGGG-GGGCCGGGGGGGTGTGCGCACATGATGTGCGATG
* * * *
17602695 GGTGCTGGTACTTTGCCCTTATATTGGCCCCCTATCCATCATCAAACCTAGAGAACTCATACCCC
1 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * *
17602760 CTTACAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGTGAA
66 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * * *
17602825 CACTTTTTTCAAATGGTCATAAAATCTTGTAAACTTCAATTTTTTAGCTGAATTTTTTTGTGCAT
131 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* *
17602890 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCAAAAAAATTTG
196 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTT-
* * *
17602955 AAAAAATCCCAAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCCTGCCAT
260 AAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
*
17603020 GAAACTTCACGTGAAGGGTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
325 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * **
17603085 A-GATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATGCACGGCTTGCATATC
390 ATG-CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* *
17603149 CCGTCACTCTGGCCGGCGTAGT-----------GCCCGCTCGTTTCATCGGTTGGCTTAGGCATA
454 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * ** * ** * * * *
17603203 CGGAGTTCATTCCTAGTCCAAGATCAGATTGGATCGAGGGTTGTAGCAACAAGATTGGCAGCACG
519 CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACG
* * * * * * * * ** *
17603268 CAGACGGGGACCTGACCGATCCCCGGCTTACGCATCCCGCCCCTCTTGTCGGCTCAATGCCCCCA
584 CAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * * * *
17603333 CGCTCGTTTTGTGGGTTGACTTAGGCATATGGAGTTAATTCCCAGTCTAAGCATATGGAGTTCAT
649 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCAT
* * * * * * *
17603398 TCCCAGTCTAAAATCAGACCAGACTGTGCGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGTTG
714 TCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* ** ** *
17603463 GTGCCACATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCACCGGAGAACCTGACCGATGGCA
779 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCA
* *
17603528 TTGGGGTTCCGACGGTCGGGGGGGC-GGGGGGTGTGCGCACATGATGTGCGATG
844 TTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATG
* *
17603581 GGTGCTGGTACTTGTCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCATACCCC
1 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
17603646 CTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGGGA
66 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * * *
17603711 CACTTTTTTCAAACGTTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATTTTTTTGTGCAC
131 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * *
17603776 GCCAACAAAAATAAAAGGATCACGTCTACCATGCTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
196 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAAATTT
* * *
17603841 AAAAAATCCCGAACCGCAAAAGGTTTCGAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
260 AAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
* *
17603906 GAAACTTCACGTGAAGGCTTAAGGGACTATTGTATGAATTTACAAGGCATAAAAATGGCATTGGC
325 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* *
17603971 ATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCC
390 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
17604036 CGTCTCTCTGGCCGGCGTAGT-------GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
455 CGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * * *
17604094 GGAGTTCATTCCCAGCCTAAGATCGGACCGGACCGAGGGTTGAGGTAGCATGATCGGTAGCATGC
520 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGC
* * * * * * * * *
17604159 AGAGGGTGACCCCG-CCGAT-CTCGAGCCTGTGCATCCCGCCCCTCCGACTGGCTGAGCGCCCGT
585 AGAGGGGGA-CCCGATCGATCCCCGA-CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
* * *
17604222 ACGCTAGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTTTAAGCATACGAAGTTCA
648 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCA
* * * *
17604287 TTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACAAGCTGGGCTTGGGCATGTGCT
713 TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT
* ** * *
17604352 GGTGCCACATTTTTC-T--T----------TC-CCGGAGCATCACCGGAGAACCAGATCGACGGC
778 GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGC
*
17604403 ATTGGGGTTCTGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATG
843 ATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATG
*
17604459 GGTGCTGGTACTTGGCCAC-TATATTGGCCCCCTATCCCTCATCAAACTTCGAGAACTCACACCC
1 GGTGCTGGTACTTGGCC-CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
17604523 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCAATTAAAGTGTCTGAAATGGGG
65 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
*
17604588 ACACTTTTTTGAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
130 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* *
17604653 TACCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTT
195 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTT
* * * *
17604718 AAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAAAAAACGAGTTGTCTTGCCA
260 -AAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
* * * * * *
17604783 TGAAACTTCACGCGAAGGCCTAAGGGGCCACTGTATGAATTTACATGCCTTAAAAATGGCATTGG
324 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* *
17604848 CATGTAGGAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
389 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * * * *
17604913 TCATCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCTCGCTAGTTTCGTCAGTTGGCTTAGGCAT
454 CCGTCTCTCTGGCCGGCGTAGTGCCCG-CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * ** *
17604978 ACGGAGTTGATTCCCAATCTAAGATCAGACTGGACCGAGGGTTACGGCAGCAGGATCGACAGCCC
518 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCAC
* * * * * * *
17605043 GCAGTGGGGGACCCGGTCGATCCCCAAGTTGTGCATCTCGCCCCTCTGGCCGGTTGAGCGCCCGC
583 GCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
* * * * * *
17605108 ACACTCATTTCGTGGGTTGACTTAGGTATACAGAGTTCATTCCTAGTCTAAGCATACGGAGTTCA
648 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCA
* * * *
17605173 TTCCCAGTCTAAGATCCGACCGGACCGAGGGTTGCAGCAGCACATGCTGGCCTCGGGCATGTGCT
713 TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT
* * * *
17605238 GGTGCTGCATTTTTCTTCG-CTGGGGCACCATCGCCAGAGCATCATCGGAGAACCTGACCGGCGG
778 GGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGG
* *
17605302 CATTGGGGTTCCAATGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATG
842 CATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATG
* *
17605359 GGTGCCGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCGAGAACTCACACCCC
1 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
17605424 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGAGGA
66 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * *
17605489 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTATCTGAATTTTTTTTGTGTA
131 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCA
* *
17605554 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCCGAAAAAATTT
195 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTT
* * * *
17605619 AAAAAAATCCTGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
260 -AAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
* *
17605684 TTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGG
324 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
** *
17605749 CACACAGAAATATGAAAATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG-TTGCGCATC
389 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
** * * * * *
17605813 CCGTCTCTCTGGCCAACGTAGT-------GCCTGCCTGCTTGTTTCATCGGTGGGCTTAGGCATA
454 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * * * *
17605871 CGGAGTTCATTCCCAGTCTAAGATCATATCAGACTGAGGGTTGTGGCTGCAGAAGGATCGGTAGC
519 CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGG-T-T-GCGGCAGCAGGATCGGTAGC
* ** * *
17605936 ACACAGA-GGGGACCCGGCCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGTTGAGCGCCC
581 ACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
** * * *
17606000 GCACGCTCGTTTCAAGGGTTGACTTAGTCATACGGAGTTCATTCCCAATCTAAGCAGACGAAGTT
646 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTT
* * * *
17606065 CATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATATG
711 CATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
*
17606130 CTGGTGTCGCATTTTTCTTCGTCGGGG---CA----C----CATCGTCGGAGAACCTGACCGACG
776 CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACG
* * *
17606184 GCATTGGGGTTCC-AGTGATCGGGGGGTC-GGGGGGTGTGTGCACATGATGT-CTGATG
841 GCATTGGGGTTCCGA-CGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC-GATG
*
17606240 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCC
1 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
17606305 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAACTGTCTGAAATGGTGA
66 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
*
17606370 CACTTTTTTCAAATGGTCACAAAATCATGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
131 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * *
17606435 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACTAAAACTCCATCCAAAAAAATTCT
196 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATT-T
* ** *
17606500 AAAAAATCCCGAACCGTAAAAAGTTTTGAAAATTATGAAAAATAGAAAACGAGCCGTCTTGCCAT
260 AAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
* *
17606565 GAAACTTCACGAGAAGTCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
325 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
***
17606630 ACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
390 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * *
17606695 CGTTTCTCT-GCCTGACGTAGTGCCCGCCCATCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAG
455 CGTCTCTCTGGCC-GGCGTAGTGCCCG-----CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * ** * * * * *
17606759 GCATATGGAGTTCATTTCCAGTCTAAGATTGGATCAGACCGAGGGTTGCGGTAGTAGGATCGGCA
514 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGTA
* * * *
17606824 GCACGCAGAGGGGGACCCGATCGATCCCCGATTTGCACATCCCGTCCCTCTGGCCAGCTGAGCGC
579 GCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
** * * *
17606889 TTGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
644 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAG
* * * * * *
17606954 TTGATTCCCAGTGTAAGATCGGACGAGACCGAGGGTTACGGCTGCACATGCTAGGCTCGGGCATG
709 TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* * * * *
17607019 TGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGAAAAACCTGACCGG
774 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGA
* * * * *
17607084 CAGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCACACATGATGTGTGGTG
839 CGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATG
* * *
17607143 GGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATGAAACCTTGAGAACTCACACCCC
1 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * * *
17607208 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAGGTCTCTGAAATAGGGA
66 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* *
17607273 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTAAGCTGAATTTTTTTATGCAT
131 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* *
17607338 GCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAAATTT
196 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-CAAAAAAA-TT
* * *
17607403 TTAAAAATCCCGAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCA
259 TAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
* *
17607468 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAACCCATAAAAATGGCATTGA
324 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * *
17607533 AATGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCTACGGCTTGCGTATC
389 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * * * *
17607598 TCGTCTCTCTGGCTGGCGTAGTG--C-CCGTCCGCCC-CTTGTTTCGTCAGTTGGCTT-GCCATA
454 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * *
17607658 CGGAGTTCATTCCCAGT-TCAAGATGTTAGACCGAAAACCGGGGGTTCAGCTGCGTAGCAGGATC
519 CGGAGTTCATTCCCAGTCT-AAGA--TCAGACCG--GACCGAGGGTT--GC-G-GCAGCAGGATC
* * *
17607722 -GTAAGGCACGCACGCGAGAGGGACCC-AGCCGATTCCCCACCGGCTTGCGCATTCACCGCCCCT
575 GGT-A-GCACGCA---GAGGGGGACCCGA-TCGA-T--CC-CCGACTTGCGCA-TC-CCGCCCCT
** *
17607785 CTGGCCTAACT-AGC-CCCGCACGCTCCGTTTCGT-GTTTGACTTAGGCCATACGGAAG-T--TT
628 CTGGCC-GGCTGAGCGCCCGCACGCT-CGTTTCGTGGGTTGACTTAGG-CATACGG-AGTTCATT
* * **
17607844 --CA-T-T---C---C--A--T-AGT----G-CTAA-ATCGGACCAGACTGA-GGTTGCGATAGC
689 CCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGC
**** * *
17607887 ACATGCTGGGCTC-GGCATGTGCTGCGTGGTTTATTTTTCTTCGTCGAGAGTACCATTCGCCGGA
754 ACATGCTGGGCTCGGGCATGTGCTG-GTGCCGCATTTTTCTTCGTCG-GGGCACCA-TCGCCGGA
* * * * * *
17607951 GCATCATCGAAAAACCTGATCGACGGCATT-GGGTTCCG-TGATCGGGGGACC--------G-GC
816 GCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGC
17608005 GCACGATGATGT-CGATG
881 GCAC-ATGATGTGCGATG
* *
17608022 GGTGTTGGGTACTTGGCCCTTTTATTGGCCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
1 GGTGCT-GGTACTTGGCCCTTATATTGG-CCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
17608087 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
64 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * * * * *
17608152 AACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTGTAGGTG-ACTTTTTTATGA
129 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * *
17608216 ATGCCAACAAAAACACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAGTT
194 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA-AT
** * ** * *
17608281 TTAAAAAAGT-TTGAACCGTAAAAAGTTTCAAAAATGGTGAAAAATAAAAAACGAGTCGTCTTGC
258 TTAAAAAA-TCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
17608345 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
322 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
17608410 GGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
387 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * *
17608475 TCCCGTCTCTCTGGCCAGCGTAGTTTCGCCCGCCTGCCTGCTCGCTCGTTTCATCGGTTGGCTTA
452 TCCCGTCTCTCTGGCCGGCGTAG--T-GCCCGCC-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * * *
17608540 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGGGGTAGTAGGATCGGC
513 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGT
* * * * ** * *
17608605 AGCACGCAGAGGGGAACCCGATCGATCCCCTACTTGCGTATCCCACCCCTCTACCCGACTGAGCA
578 AGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
*
17608670 CCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-CG--
643 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAA
* * * *
17608731 G---------A--CT---A---GA-C-TA---AGGGTTGCGACAGCACATGCTAGGCTCGGGCAA
708 GTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
* * * * ** *
17608774 GTGCTAGTGCCGCATTTCTCTACGCCGGGGCACCATCGCTAGAGCATCATCGGAGAACCTGACCG
773 GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCG
* * * *
17608839 GCGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGAGCACACATGATGTGCGATG
838 ACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATG
** *
17608899 AATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCC
1 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
17608964 TTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGA
66 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * * * *
17609029 CACCTTCTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTCAATGTTTTTTATGCA
131 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTTGTGCA
* * * * *
17609094 TGCCAAAAAAAATACAAGGATCACCTTTACCAAGTTTGGGGCCAAAACTACTTCCGAAAAAATTT
195 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAAATT
* ** **
17609159 TAAAAAATCCCTAACCATAAAAAGTTTTGAAAATCGTTTAAAATAGAAAACGAGTCGTCTTGCCA
259 TAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
17609224 TGAAAC-TCAACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
324 TGAAACTTC-ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
** * * *
17609288 GCACACAGAAATATGAAGATGTGCCTAAACCAACCTAGCACCCTATCGATCCACGGCTTGCGTAT
388 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
*
17609353 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCGCCCTCTCGTTTCGTCGGTTGGCTTA
453 CCCGTCTCTCTGGCCGGCGTAGTGCCCG-CCG----CCCGCCCGCTCGTTTCGTCGGTTGGCTTA
*
17609418 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGGT
513 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGT
*
17609483 AGCATGCAGAGGGGGACCCTG-TCGATCCCC-AGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
578 AGCACGCAGAGGGGGACCC-GATCGATCCCCGA-CTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
17609546 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATATA
641 CGCCCGCACGCTCGTTTCGTGGGTTGAC-T-----T--AG-G--CA-T---A--C---G------
** *
17609611 GAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAAACCAAACCGAGGGT
680 GAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGT
* * * ** * *
17609676 TGCGACAGCACATGCTAGGCTTGGGCATGTGCTGGTGCCATATTTTTCTTCATCGGCGCACCATC
745 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
* * * * ** * * * * *
17609741 ACCGGACCATCGTCAGAGAACTTGACCGGTGACGTTGGGGTTCCAACGATCGGGGCGGTCGAGGG
810 GCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGG-GGCCGGGGG
*
17609806 GGTGTGCGCACTTGATGTGCGATG
874 GGTGTGCGCACATGATGTGCGATG
* * * * * *
17609830 GGTGTTGGTACGTGGCCCTTATAATGGCCCCTTATCTCTCATCAAACCTCAAGAACTCACA-CCC
1 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * **
17609894 CTTAAAGATCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATAAGGA
66 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
*
17609959 CACTTTTTTCAAATGCTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
131 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * * * *
17610024 GCCAACAAAAATACAAGGATAACATCTACCAAATTTGGGGCCAAAAATCCATCCGAAAAAATTTT
196 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAAATTT
** * * ** * * *
17610089 AAAAAATCAAGAATCTCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCAA
260 AAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
*
17610154 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAGGGCATTGGC
325 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * * * * *
17610219 ATGCAGAAATATGTAGATCTACCTAAGCCCACCTACCACCCTATCGATCCACGACTTTCGCATAC
390 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* ** *
17610284 CGTCTCTCTGGCCGACGTAGTGCCCTTTCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATA
455 CGTCTCTCTGGCCGGCGTAGTGCCC-GCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * ** * *
17610349 CGGAGTTCATTCCCAGTCTAAGACCAGACTGGACCGAGGGTTATGGCAGTAGGATCGGTAACACG
519 CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACG
* * * * * * *
17610414 CAGAGGGGGACCCGATCGATCCTCGGCCTGCGCATCCTGCCCCTCTAGCCGACTAAGCGCCCGCA
584 CAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * * *
17610479 CACTCATTTCGTGGGTTGACTTAGGCATACGTAGTTCATTCCCAGTCTAAGCATACGAAGTTCAA
649 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCAT
* *
17610544 TCCCAGTCTAAGATCAGTCCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
714 TCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * * *
17610609 GTGCCGCATTTTTCTTTGTCGGGGCATCATCGTCGGAGCATCGTCGGAGAACCTGTCCGACGGCA
779 GTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCA
* *
17610674 TTGGGGTTCCGGCGATCGGGGGGGCCGACGGGGGTGTGCGCACATGATGTGCGATG
844 TTGGGGTTCCGACGATC-GGGGGGCCG-GGGGGGTGTGCGCACATGATGTGCGATG
* * *
17610730 GGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATGCCTCATCAAACCTCTAGAACTCACACCCC
1 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
17610795 CTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCTGTAGCCATTAAAGTGTCTGAAATGGGGA
66 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
17610860 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
131 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* ** ** *
17610925 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTTCTTTTGAGGAAATTTT
196 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-TCCTTCCAAAAAAATTT
* ** *
17610989 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCAT
260 AAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
17611054 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
325 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * *
17611119 ATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCATGGCTTGCGCATCC
390 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * *
17611184 CGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCAAGCTCACTCGTTTCGTCGGTTGGCTTAGG
455 CGTCTCTCTGGCCGGCGTAGTGCCCG-CCG-CC-C--GCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * ** * * * *
17611249 CATACAGAGTTCTTTCCTAATCTAAGATCAGACCAGACAAAGGGTTGTGGTAGCAGGATAGATAG
515 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGTAG
* * ** * * * ** *
17611314 CACACAAAGGGGGACCCGGCCGATCCCCGGCTTGCACATCCCGCCCCTCCGGTTGGCTAAGCGCC
580 CACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* * * *
17611379 TGCACACTCGTTTCATGGGTTGACTTAGTCATACGGAGTTCATTCCCAG--T---C-T---AAG-
645 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGT
* * *
17611434 --ATT----G-----GAT-----CAGACCGAGGGTTACGGCAGCACATGCTAGGCTCAGGCATGT
710 TCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT
* * * *
17611483 ACTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGGGCACCATCGTCGGAGCATCACCGG
775 GCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-GC-CGG-AGCATCGTCGGAG-A--ACC--
* * * *
17611548 AGAACTTGACTGGCAGCATTGGGGTTCC-A-GTAATTGGGGGGCCGGGGGGGTGTGCACACATGA
832 TG-AC-CGAC--G--GCATTGGGGTTCCGACG--ATCGGGGGGCCGGGGGGGTGTGCGCACATGA
17611611 TGTGCGATG
889 TGTGCGATG
* * *
17611620 GGTGCAGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCAAGAACTCACACCCC
1 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * *
17611685 CTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGCGA
66 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * * *
17611750 CTCTTTTTTCAAATGGTCATAAAATCTTGTAAACTTCGAGTTTGTAGCTGAATTTTTTTGTGCAT
131 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * * * *
17611815 GCCAAAAAAAATACAAGGATCATGACTACCAGGTTTGGGACCAAAACTCCTTCCAAAAAATTTTT
196 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA-ATTT
* * ** *
17611880 CAAAAATCCCGAACCGCATAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
260 AAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
* *
17611945 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCGTAAAAATGGCTTTGGC
325 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * *
17612010 ATGCAGAAATATGGAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGCAACC
390 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * *
17612075 CGTCTCTCTGGCCGGCGTAGTGCCCATCGGCCCGCCCGTTCGTTTTGTCGGTTGGCTTAGGCATA
455 CGTCTCTCTGGCCGGCGTAGTGCCC-GCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * *
17612140 CGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTGC
519 CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGC
17612184 TACAGCACAT
Statistics
Matches: 14666, Mismatches: 1667, Indels: 715
0.86 0.10 0.04
Matches are distributed among these distances:
866 32 0.00
867 15 0.00
868 41 0.00
869 21 0.00
870 31 0.00
871 23 0.00
872 13 0.00
873 2 0.00
874 8 0.00
875 149 0.01
876 89 0.01
877 293 0.02
878 690 0.05
879 224 0.02
880 354 0.02
881 381 0.03
882 10 0.00
883 44 0.00
884 13 0.00
885 6 0.00
886 819 0.06
887 330 0.02
888 79 0.01
889 116 0.01
890 598 0.04
891 427 0.03
892 121 0.01
893 600 0.04
894 894 0.06
895 417 0.03
896 607 0.04
897 43 0.00
898 102 0.01
899 564 0.04
900 1004 0.07
901 778 0.05
902 1293 0.09
903 680 0.05
904 965 0.07
905 411 0.03
906 526 0.04
907 43 0.00
908 4 0.00
909 2 0.00
910 12 0.00
911 21 0.00
912 30 0.00
913 6 0.00
914 2 0.00
916 1 0.00
917 3 0.00
919 3 0.00
922 1 0.00
924 2 0.00
925 167 0.01
926 1 0.00
927 1 0.00
929 264 0.02
930 214 0.01
931 76 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (897 bp):
GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTA
AAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
GTCTCTCTGGCCGGCGTAGTGCCCGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCA
GAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTC
CCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
GCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATT
GGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATG
Found at i:17597107 original size:26 final size:26
Alignment explanation
Indices: 17597078--17597130 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17597068 GTTGACTTAG
* *
17597078 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17597104 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17597130 G
1 G
17597131 ATTGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17598009 original size:26 final size:26
Alignment explanation
Indices: 17597980--17598032 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17597970 GTTGACTTAG
*
17597980 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
17598006 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
17598032 G
1 G
17598033 ATTGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:17598920 original size:26 final size:26
Alignment explanation
Indices: 17598884--17598936 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17598874 GTTGACTTAG
* *
17598884 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
17598910 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
17598936 G
1 G
17598937 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:17599823 original size:26 final size:26
Alignment explanation
Indices: 17599786--17599837 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17599776 GTTGACTTAG
17599786 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
17599812 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAATCTAA
17599838 AATCAGACTG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:17600733 original size:26 final size:26
Alignment explanation
Indices: 17600681--17600733 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17600671 GTTGACTTAG
*
17600681 GCATACGAAGTTCATTCCCAGTATAA
1 GCATACGAAGTTCATTCCCAGCATAA
* * *
17600707 GCATACGGAGTTCGTTCCCAGCCTAA
1 GCATACGAAGTTCATTCCCAGCATAA
17600733 G
1 G
17600734 ATCAGACCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGCATAA
Found at i:17601614 original size:26 final size:26
Alignment explanation
Indices: 17601577--17601629 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17601567 GTTGACTTAG
17601577 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
17601603 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17601629 G
1 G
17601630 ATCGGATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17602506 original size:26 final size:26
Alignment explanation
Indices: 17602470--17602522 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17602460 GTTGACTTAG
17602470 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17602496 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17602522 G
1 G
17602523 ATCGAACCCG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17603393 original size:26 final size:26
Alignment explanation
Indices: 17603357--17603408 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
17603347 GTTGACTTAG
17603357 GCATATGGAGTTAATTCCCAGTCTAA
1 GCATATGGAGTTAATTCCCAGTCTAA
*
17603383 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTAATTCCCAGTCTAA
17603409 AATCAGACCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATATGGAGTTAATTCCCAGTCTAA
Found at i:17605171 original size:26 final size:26
Alignment explanation
Indices: 17605135--17605185 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17605125 TGACTTAGGT
*
17605135 ATACAGAGTTCATTCCTAGTCTAAGC
1 ATACAGAGTTCATTCCCAGTCTAAGC
*
17605161 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
17605186 ATCCGACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:17606954 original size:26 final size:26
Alignment explanation
Indices: 17606918--17606970 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17606908 GTTGACTTAG
17606918 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
17606944 GCATACGGAGTTGATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17606970 G
1 G
17606971 ATCGGACGAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17609614 original size:26 final size:25
Alignment explanation
Indices: 17609578--17609656 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 25
17609568 GTTGACTTAG
17609578 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATA-AGAGTTCATTCCCAGTCTAA
17609604 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATA-AGAGTTCATTCCCAGTCTAA
*
17609630 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATAAG-AGTTCATTCCCAGTCTAA
17609656 G
1 G
17609657 ATCAAACCAA
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
25 1 0.02
26 49 0.98
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.28
Consensus pattern (25 bp):
GCATAAGAGTTCATTCCCAGTCTAA
Found at i:17610540 original size:26 final size:26
Alignment explanation
Indices: 17610503--17610555 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17610493 GTTGACTTAG
* *
17610503 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCAATCCCAGTCTAA
17610529 GCATACGAAGTTCAATCCCAGTCTAA
1 GCATACGAAGTTCAATCCCAGTCTAA
17610555 G
1 G
17610556 ATCAGTCCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCAATCCCAGTCTAA
Found at i:17611524 original size:14 final size:14
Alignment explanation
Indices: 17611505--17611536 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
17611495 TTTTTCTTCG
17611505 TCGGGGCACCATCA
1 TCGGGGCACCATCA
*
17611519 TCGGGGCACCATCG
1 TCGGGGCACCATCA
17611533 TCGG
1 TCGG
17611537 AGCATCACCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.16, C:0.34, G:0.34, T:0.16
Consensus pattern (14 bp):
TCGGGGCACCATCA
Found at i:17615599 original size:26 final size:26
Alignment explanation
Indices: 17615569--17615621 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17615559 GTTGACTTAG
*
17615569 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGCCTAA
**
17615595 GCATATGGAGTTCATTCCCAGCCTAA
1 GCATACAGAGTTCATTCCCAGCCTAA
17615621 G
1 G
17615622 ATCGAACCGT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGCCTAA
Found at i:17616069 original size:26 final size:26
Alignment explanation
Indices: 17616033--17616085 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17616023 GTTGACTTAG
*
17616033 GCATACAGAGTTGATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
17616059 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17616085 G
1 G
17616086 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17616088 original size:464 final size:461
Alignment explanation
Indices: 17615164--17616088 Score: 1284
Period size: 461 Copynumber: 2.0 Consensus size: 461
17615154 AAAAAATCTT
* * *
17615164 GAACCGTAAAAATTTTAAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATCAAACTTAAC
1 GAACCGTAAAAATTTTAAAAAATCATGAAAAATAAAAAACGAGTCATCTTGCCATCAAACTTAAC
*
17615229 GTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGCTTTGGCATGCAGAAAT
66 GTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
* * * * * *
17615294 ATGAAGATGTGCCTAAACCCACTTACAACCCTACTGATCCATGGCTTGCGCATCCCTCTCTCTGG
131 ATAAAGATGTGCCTAAACCCACCTACAACCCTACTAATCCACGACTTGCACATCCCTCTCTCTGG
** * * ** * * *
17615359 CCAGCGTGGTGCCCACCTGCCCGTCCGCTTGCTCATTTCGTTGGTTGCTTAGGCTTACGGAGTTC
196 CCAGCGCAGTACCCACCTGCCCGCCCGCCCGCTCATTTCGTTGGTTGCCTAGGCATACGCAGTTC
* *
17615424 ATTCTCAGACTAAGATCAGACGGACTGAGGGTGGTGGCAGTAGGATCGGCAGCACACAGAGGGGG
261 ATTCTCAGACTAAGATCAGACGGACTGAGGGTGGTAGCAGCAGGATCGGCAGCACACAGAGGGGG
* * * * * * *
17615489 ACCCAACCGATCCTCGACTTGCGCATCCCGCCCCTCTGGTCGGTTGAGCGCCCACATGTTCGTTT
326 ACCCAACCGATCCTAGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAACGCCCACACGCTCATTT
*
17615554 CATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGCCT
391 CATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGCCT
17615619 AAGATC
456 AAGATC
* * *
17615625 GAACCGTAAAAAGTTTT-GAAAATCATGAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCA
1 GAACCGTAAAAA-TTTTAAAAAATCATGAAAAATAAAAAACGAGTCATCTTGCCATCAAACTTAA
17615689 CGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
65 CGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
* * * *
17615754 TATAAAGATGTGCTTAAACCCACCTACCACTCTA-TCAATCCACGACTTGCACATCTCGTCTCTC
130 TATAAAGATGTGCCTAAACCCACCTACAACCCTACT-AATCCACGACTTGCACATC-CCTCTCTC
* * * ** *
17615818 TGGTCGGCGCAGTACCC-GCTCGCTTGCCCGCCCGCTCGTTTCGTTGGTTGGCCTAGGCATACGC
193 TGGCCAGCGCAGTACCCACCT-GCCCGCCCGCCCGCTCATTTCGTTGGTT-GCCTAGGCATACGC
* *
17615882 AGTTCATTC-CTAGTCTAAGATCAGACCGGACTGAGGGTTGTAGCAGCAGGATCGGCAGCACACA
256 AGTTCATTCTC-AGACTAAGATCAGA-CGGACTGAGGGTGGTAGCAGCAGGATCGGCAGCACACA
* * * * *
17615946 GTGGGGGACCCGACCGATCCCTAG-CTTGCTCATCCTGCCCCTTTGGCCGGCTGAACGCCCACAC
319 GAGGGGGACCCAACCGAT-CCTAGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAACGCCCACAC
*
17616010 GCTCATTTCATGGGTTGACTTAGGCATACAGAGTTGATTCCCAGTCTAAGCATACGGAGTTCATT
383 GCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
*
17616075 CCCAGTCTAAGATC
448 CCCAGCCTAAGATC
17616089 AGACTGGATT
Statistics
Matches: 405, Mismatches: 51, Indels: 13
0.86 0.11 0.03
Matches are distributed among these distances:
460 1 0.00
461 163 0.40
462 46 0.11
463 33 0.08
464 158 0.39
465 4 0.01
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.24
Consensus pattern (461 bp):
GAACCGTAAAAATTTTAAAAAATCATGAAAAATAAAAAACGAGTCATCTTGCCATCAAACTTAAC
GTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
ATAAAGATGTGCCTAAACCCACCTACAACCCTACTAATCCACGACTTGCACATCCCTCTCTCTGG
CCAGCGCAGTACCCACCTGCCCGCCCGCCCGCTCATTTCGTTGGTTGCCTAGGCATACGCAGTTC
ATTCTCAGACTAAGATCAGACGGACTGAGGGTGGTAGCAGCAGGATCGGCAGCACACAGAGGGGG
ACCCAACCGATCCTAGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAACGCCCACACGCTCATTT
CATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGCCT
AAGATC
Found at i:17617897 original size:26 final size:26
Alignment explanation
Indices: 17617861--17617913 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17617851 GTTGACTTAG
17617861 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17617887 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17617913 G
1 G
17617914 ATTGGACCTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17620562 original size:26 final size:26
Alignment explanation
Indices: 17620531--17620583 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17620521 GTTGACTTAG
17620531 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17620557 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17620583 G
1 G
17620584 ATCGAACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17620999 original size:893 final size:883
Alignment explanation
Indices: 17615624--17622681 Score: 7390
Period size: 893 Copynumber: 7.9 Consensus size: 883
17615614 AGCCTAAGAT
** * * *
17615624 CGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCA
1 CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
*
17615689 CGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
66 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
* * * * * * *
17615754 TATAAAGATGTGCTTAAACCCACCTACCACTCTATCAATCCACGACTTGCACATCTCGTCTCTCT
131 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * * * *
17615819 GGTCGGCGCAGTACCCGCTCGCTTGCCCGCCCGCTCGTTTCGTTGGTTGGCCTAGGCATACGCAG
196 GGCCGACGTAGT----GC-C-C--GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * ** * *
17615884 TTCATTCCTAGTCTAAGATCAGACCGGACTGAGGGTTGTAGCAGCAGGATCGGCAGCACACAGTG
253 TTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAG
* * * * * * * * *
17615949 GGGGACCC-GACCGATCCCTAGCTTGCTCATCCTGCCCCTTTGGCCGGCTGAACGCCCACACGCT
318 GGGGACCCGGTCTGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGTCCGCACGCT
* * * * *
17616013 CATTTCATGGGTTGACTTAGGCATACAGAGTTGATTCCCAGTCTAAGCATACGGAGTTCATTCCC
383 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCC
* * ** * *
17616078 AGTCTAAGATC-AGACTGGATTGA-GGTTGTAGTAGCACATGCTGGGCTCGGGCATATGCTGGTG
448 AGTCTAAGATCGA-ACCGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * *** ** *
17616141 TCACATTTTTCTTTGCCGGGGCACCATTGCCGGAGCATCACCGGAGAACCTGACCGATGGCATTA
512 CCGCATTTTTCTTCATC-GGGCACCA-T--C---G--TCA---GAGAACCTGACCGGCGGCATTG
* * * *
17616206 GGGTTCAGATGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
565 GGGTTCCGACGATCGGGGGGGCCGGGGGG-GTGTGCACATGATGTGCGATGGGTGCTGGTACTTG
** * * *
17616271 GCATTTCTATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTT
629 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* *
17616336 GAGATTTTACAGGTTTTCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
694 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * * *
17616401 GATCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTTTTGTGCATGCCTACAAAAATAC
759 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAC
* * * * **
17616466 AAGGATCACGTCTATCAGGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTAAAAAAATTT
824 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* ** * * * **** * * ** *
17616526 TGAACC-TAAAAAAGTTTCAAAACCCCT-----CTGGTCGGCTGAG-CG-CCTG-CACGCTCATT
1 CGAACCGT-AAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC-GAGTCGTCTTGCCATG-AAACT
** * * ** * * ** * ***
17616582 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAACATACAGAGTTCATTCCCAAT--
63 TC--ACG-TGA---AGGCTTAAGG-GACCATT---GTATGAATTTACA-AG-CCA-TAAAAATGG
** * * * * * * * * *
17616645 C-TAAG-AT-CAGACCGAAT-TG-GGGT-TGCAGT-AGCACATGCTAGGCTCGAGCATATGCTGT
115 CATTGGCATGCAGA---AATATGAAGATGTGC-CTAAACCCA-CCTA--C-C-ACCCTAT-C-GA
*** ** * * * * ** * ** *** * ***
17616703 TGCCGCATTTTTCTTTGTCGGGGTACCATC-GTCGGAGCATTATCGGAGAACCTAACTGGTGGCA
169 T--C-CA--CGGC-TTG-C-GCATCCCGTCTCTCTG-GC-CGA-CGTAGTGCCCGCCCGCCCGC-
* * * * *** * * * * * ** ** * **
17616767 TTGGGGTTCCGACGATTGG-GGGGGC-CAGGGGGTGTGCA--CACATGATGTGTGATGGGTGCTG
222 -T--CGTTTCGTCGGTTGGCTTAGGCATACGGAGT-T-CATTCCCA-G-TCTAAGATCAG-ACCA
** ** * *** ** * * ***** **
17616828 GTACTTG-GCCCTTATATTGGC-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCTATC-G
279 G-AC-TGAG--GGT-T-GCGGCAGCAGGAT-CGGCAGC--A-CGC-AG-AGGGGGACCCGGTCTG
* * * *
17616890 ATCCCTAGCTTGCACATCCCGCCACTCTGGCCGGCTCAGCG-CCTGCACGCTCGTTTCGTGGGTT
332 ATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGTCC-GCACGCTCGTTTCGTGGGTT
**
17616954 GACTTAGAAATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATC-A
396 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGA
* ** * *
17617018 GACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGATCATGTGTTGGTGCTGCATTTTTCTT
461 -ACCGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
* ** *
17617083 CGTCGTGGCACCATCGTCGGAGCATCGTAGGAGAACCTGATTGGCGGTATTGGGGTTCCGACGAT
525 CATCG-GGCACCA---TC---G--TC--A-GAGAACCTGACCGGCGGCATTGGGGTTCCGACGAT
* * * * * *
17617148 CGGGGGGACCGGGGGGCTGTTCACACATAATGTACGATGAGTGCTGGTACTTGGCCCTTATATTG
578 CGGGGGGGCCGGGGGGGTG-T-GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* *
17617213 GCCCCCTATCCCTCATCAAACATCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACTG
641 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* *
17617278 GTTTGCTGGCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATC
706 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* *
17617343 TTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAAGTC
771 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTC
* * * *
17617408 TACCAAGTTTGAGGCCAAAACTCCTACTGAAAAAATTTTAAAAAATCT
836 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* * * *
17617456 TGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCG
1 CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
*
17617521 CGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
66 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
* * *
17617586 TATGAAGATGTGACTAAACCCACCTACCACCCTATCGATCCACAGCTTGTGCATCCCGTCTCTCT
131 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* **
17617651 GCCCGGTGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
196 GGCCGACGTAGT----GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * * * *
17617716 TTCCCATTCTAAGATCAGACCAGACTAAGGGTTGTGGCAGCAGGATCGACAGCATGCAGAGAGGG
257 TTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGG
* *
17617781 ACCCGG-CTGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCGTCCGCACACTCGTT
322 ACCCGGTCTGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGTCCGCACGCTCGTT
*
17617845 TCGAGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTC
387 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTC
* * * * * * * *
17617910 TAAGATTGGACCTGA-TCGAGGGTTGCAGTAGCACATGCTGGGCTCGCGCAGGTGCTGGTGCTGC
452 TAAGATCGAACCGGACT-GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
* * *
17617974 ATTTTTCTTTGCCT-GGGCACCATCGCCAGAGCACCACCGGAGAACCTGACCGGCGGCATTAGGG
516 ATTTTTC-TT-CATCGGGCACCAT---C---G--TCA---GAGAACCTGACCGGCGGCATTGGGG
* *
17618038 TTCCGACGATCGGGGGGACCGGGGGGGTGTGCGCACAT-ATGTGCGATGGGTTCTGGTACTTGGC
568 TTCCGACGATCGGGGGGGCCGGGGGGGTGT--GCACATGATGTGCGATGGGTGCTGGTACTTGGC
* **
17618102 CCTTATATTGGCCCCCTTTCCCTCATCAAACCTTAAGAACTCACACCCCCTTAAAGAGCATTTGA
631 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* *
17618167 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTGAAATGG
696 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* *
17618232 TCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTTTTGTGCATGCCAAAAACAATACAA
761 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAA
* * * *
17618297 GGATCACATCTACCAAGTTTGGGGCTAAAGCTCCTTCCAAAAAAATTTTAAAAAATCC
826 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* **
17618355 CGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
1 CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* **
17618420 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGCCATTGGCATATAGAAA
66 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
* * *
17618485 TATGAAGATGTGTCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTTT
131 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * *
17618550 GGTCGGCGTAGTGCCCGCCCTCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCC
196 GGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
** * * * * *
17618615 CAGTCTAAGATTGGACCGGACCGAGGGTTACGGCAGTAGGATCGGCAGCACACAGAGGGCGG-CC
261 CAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGG-GGACC
* * * *
17618679 CGGTC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGTTCGTTTCG
325 CGGTCTGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGTCCGCACGCTCGTTTCG
* * * * * **
17618743 TAGTTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAACCACATGGAGTTCATTCCTTGTCTAA
390 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAA
* * * * *
17618808 GATC-AGACCAGACCGAGGGTTGTGGCTGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATT
455 GATCGA-ACCGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
* * * * ** * *
17618872 TTTC-T--TC--G-----TCG---GGGAACCTTACCGACGGAATTGGGGTTTTGGCGATCGAGGG
519 TTTCTTCATCGGGCACCATCGTCAGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGG
*
17618924 GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
584 GGCCGGGGGG-GTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* *
17618989 ATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCT
648 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
*
17619054 GCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
713 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * * *
17619119 CTTCGAGTTTTTAGCTGAATGTTTTTGAGCATGCCAACAAAAATACGAGGATCACGTCTACCAAG
778 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAG
*
17619184 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTCAAAAATCC
843 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* * *
17619225 CGAACC-TCAAAAGATTTCAAAAATCTTGAAAAATAGAAAACGAGTCGTCTTACCATGAAACTTC
1 CGAACCGTAAAAAG-TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * *
17619289 ACGTGAAGGTTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAA
65 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
*
17619354 ATATGAATATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
130 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
*
17619419 TGGCCGACGTAGTGCCCGCCCGCCTGCCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
195 TGGCCGACGTAGTGCCCG--C-CC-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * *
17619484 ATTCCCAATCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATTGGCAGCACGCAGAGGGG
256 ATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGG
* * * * *
17619549 GACCC-GACTGATCCCTGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGGGCCCGCACTCTCGT
321 GACCCGGTCTGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGTCCGCACGCTCGT
* *
17619613 TTCGTGGGTTGACTTAGGCTTACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAAT
386 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGT
* * * * * * *
17619678 CTAAGATCGGACCAGACTGAGGATTGCGACAGCACATGCTAGGTTCGGGCATGTGCTGGTGCCGT
451 CTAAGATCGAACCGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
* *
17619743 ATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGATCGGCGGCATTGGGGT
516 ATTTTTCTTCATC-GGGCACCATCGT-----CA------GAGAACCTGACCGGCGGCATTGGGGT
* * *
17619808 TCCGATGATCGGGGGGGCC-GGGGGGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCT
569 TCCGACGATCGGGGGGGCCGGGGGGGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* * *
17619872 TATATTGGCCCCCTATCCCTCATCAAACCTGGAGAACTCACACCCCCTCAAAGAGCATTGGAGAT
634 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* *
17619937 TTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCA
699 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* * *
17620002 CAAAATCTTGCACACTTCGAGTTTTTAGCTGAATTTGTTTGTGCATGCCAACAAAAATACAAGGA
764 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGA
* *
17620067 TCACGTCTATCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCT
829 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* * * *
17620122 CGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAATGAGTTGTCTTGCCATGAAACTTCA
1 CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * * *
17620187 CGCGAAGGCATAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGACATTGGCATGCAGAAA
66 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
* * * *
17620252 TATGAAGATGTGCCTAAATCCTCTTACCATCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
131 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* *
17620317 GGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGTTCGTTTCGTC-GTGTGGTTTAGGCTTACGGA
196 GGCCGACGTAGT----GCCCGCCCGCCCG--C--TCGTTTCGTCGGT-TGGCTTAGGCATACGGA
* * * ** * *
17620381 CTTTATTCCCAGTCTAAGATCAGTCCAGACTGAGGGTTGCGATAGCAGGATCGGTAGCATGCAGA
252 GTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGA
* * * * ** * ** * **
17620446 GGGGGACTCGGTC-GATGCTTGGTTTATGCATCCCGGCCCTCTGGATGGCTGAGCATCCATACGC
317 GGGGGACCCGGTCTGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGTCCGCACGC
* *
17620510 TCTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
382 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCC
* * * * * *
17620575 CAGTCTAAGATCGAACCGGACTAAGGCTTTCAGCAGCACATGCTAGACTCGGGCATGTGCTGGTG
447 CAGTCTAAGATCGAACCGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* *
17620640 CCACAGTTTTCTTCATCGAGGCACCATCGTCAGAGAACCTGACCGGCGGCATTGGGGTTCCGACG
512 CCGCATTTTTCTTCATCG-GGCACCATCGTCAGAGAACCTGACCGGCGGCATTGGGGTTCCGACG
* * *
17620705 ATCGGGGGGGCCGGGTGGGAGTGTGCACGTGATGTGCGATGGGTGCTGGTACTAGACCCTTATAT
576 ATCGGGGGGGCCGGG-GGG-GTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
*
17620770 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTGACACCCCCTTAAAGAGCATTTGAGATTTTAC
639 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* *
17620835 AGGTTTGCTACCAGTAGCCATTAATGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
704 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* *
17620900 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGAATACCAAAAAAAATACAAGGATCACG
769 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACG
* ** *
17620965 TTTACCAAGTTCAGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCT
834 TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
** * *
17621015 CGAACCAAAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGACATGAAACTTCA
1 CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * **
17621080 CGTGAAGGCTTAAGGGACGAATGTATGAATTTACAAGCCATAAAAATGTTATTGGCATGCAGAAA
66 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
* * *
17621145 TATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCA
131 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * *
17621210 GGCC-AGTGTAGTGCCCGCCAGCCCGCTCGCCCGGTCGTTTTGTCGGTTGGCGTAGGCATACGGA
196 GGCCGA-CGTAGTG--C-CC-G--C-C-CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* ** * * *
17621274 GTTCATTCCCAGTCTAAGATCAGATCAGACCAAGGGTTGTGGCAGCAAGATCGGCAGCACACAGA
252 GTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGA
** * * ** * *
17621339 AAGAGACCC-GACTGATCCCTGGCTTGTACATCCCGCCCCTCTGGTCGACTGAGCG-CCTGCACG
317 GGGGGACCCGGTCTGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGTCC-GCACG
* * * **
17621402 CTCTTTTCGTGGGTTCACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTTTTTC
381 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTC
* * * * *
17621467 CCAATCTAAGATCGGAA-TGGACCGAAGGTTGCGGCAGCACATGCTGGGCTAGGGCATGTGCTGG
446 CCAGTCTAAGATC-GAACCGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * *
17621531 TGTCGTATTTTTCTTCATCGGGGCACCATCGCCAGAGCATCGCCAGAGAACCTGACCGGTGGCAT
510 TGCCGCATTTTTCTTCATC-GGGCACCAT---C---G--T---CAGAGAACCTGACCGGCGGCAT
* * * *
17621596 TAGGGTTCCGACGATCGGGGGGGCCGGGGGGGTCTATGCACATGATGTGCGATGGCTGCTGCTAC
563 TGGGGTTCCGACGATCGGGGGGGCCGGGGGGG--TGTGCACATGATGTGCGATGGGTGCTGGTAC
* *
17621661 TTGGCCCTTATATTGGCCCCCTATCCCCCATCAAACCTCGAGAACTCACACCCCCTTAAAGATCA
626 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* * *
17621726 TTTGAGATATTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCA
691 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * *
17621791 AATGGTCATAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAA
756 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAA
* * * *
17621856 TACAAGGATCACGTCTACCAAGTTTGGGGCTAAACCTCCTTCCAAAAAAATTTTAAAATATCC
821 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* * * *
17621919 CAAACCGTAAAAAGATTT-AAAAATCGTGAAAAATAGAAAATGAGTCATCTTGCCATGCAACTTC
1 CGAACCGTAAAAAG-TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* *
17621983 ATGTGAAGGCTTAAGGGGCCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
65 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
* * *
17622048 ATATGAAGATGTGCCTAAACCCACTTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTT
130 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * * * * * * *
17622113 TGGTC-AGCATAGTGCCCGCCTGCCTGCACGTTTCGTCAGTTTGCTTAGGCATATGGAGTTCATT
195 TGGCCGA-CGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * * * *
17622177 CCTAGTCTAAGATTAGACCAGA-TCGAGGGTTGTGGCAGCAAGATCAGCAGCACGCAGAGGGGGA
259 CCCAGTCTAAGATCAGACCAGACT-GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGA
* * * * * *
17622241 CCCGATC-GATCCCCGGCTTGTGCATCCTGCCCCTCTGGTCGGCTGAGCGTCCGCGCGCTCGTTT
323 CCCGGTCTGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGTCCGCACGCTCGTTT
** * *
17622305 CACGGGTTGACATAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
388 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCT
* **
17622370 AAGATCGGACCGGACT-A-----G-GG--G--C--GC--GGCT-----ATGTGCTGGTGCAACAT
453 AAGATCGAACCGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
* * * ** *
17622415 TTTTCTTCTTTGAGGCACCATCGTCGGAGAACCTGATTGGTGGCATTGGGGTTCCGACGATCGGG
518 TTTTCTTCATCG-GGCACCATCGTCAGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGG
** * *
17622480 GGGGCCGAAGGGGTGTACACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAGTGGCCC
582 GGGGCCGGGGGGGTGT--GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
*
17622545 CCTATCCTTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
645 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* *
17622610 GCCGCCAGTAGCCATTAAAGTGTCTGAATTGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
710 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
17622675 ACACTTC
775 ACACTTC
17622682 TACCAACTTT
Statistics
Matches: 5171, Mismatches: 785, Indels: 437
0.81 0.12 0.07
Matches are distributed among these distances:
863 2 0.00
865 219 0.04
868 1 0.00
869 11 0.00
870 493 0.10
871 3 0.00
872 1 0.00
873 7 0.00
874 262 0.05
875 2 0.00
876 30 0.01
877 2 0.00
878 1 0.00
880 1 0.00
881 5 0.00
883 2 0.00
884 1 0.00
885 4 0.00
887 1 0.00
889 4 0.00
890 45 0.01
891 3 0.00
892 10 0.00
893 701 0.14
894 6 0.00
895 273 0.05
896 221 0.04
897 476 0.09
898 19 0.00
899 487 0.09
900 248 0.05
901 281 0.05
902 34 0.01
903 9 0.00
904 502 0.10
905 19 0.00
906 15 0.00
907 8 0.00
908 4 0.00
909 11 0.00
910 3 0.00
911 23 0.00
912 4 0.00
913 21 0.00
914 5 0.00
915 16 0.00
916 8 0.00
917 22 0.00
918 9 0.00
919 9 0.00
920 2 0.00
921 7 0.00
922 5 0.00
923 16 0.00
924 3 0.00
925 8 0.00
926 15 0.00
927 12 0.00
928 137 0.03
929 109 0.02
930 289 0.06
931 2 0.00
933 2 0.00
934 5 0.00
935 5 0.00
936 7 0.00
937 3 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (883 bp):
CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
GGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
CAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCC
GGTCTGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGTCCGCACGCTCGTTTCGT
GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAG
ATCGAACCGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT
TCTTCATCGGGCACCATCGTCAGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG
CCGGGGGGGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT
GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
Done.