Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 98 of 195
Found at i:17752403 original size:26 final size:26
Alignment explanation
Indices: 17752347--17752404 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
17752337 ACACCTTTCG
* * * *
17752347 AAAAAATTTTAAAAATCCTGAACAGT
1 AAAAAATTTCAAAAATCATGAAAAAT
* *
17752373 TAAAAGTTTCAAAAATCATGAAAAAT
1 AAAAAATTTCAAAAATCATGAAAAAT
17752399 AAAAAA
1 AAAAAA
17752405 CGAGTCGTCT
Statistics
Matches: 24, Mismatches: 8, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.60, C:0.09, G:0.07, T:0.24
Consensus pattern (26 bp):
AAAAAATTTCAAAAATCATGAAAAAT
Found at i:17755431 original size:26 final size:26
Alignment explanation
Indices: 17755395--17755444 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
17755385 GTTGACTTAG
17755395 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17755421 GCATACGGAGTTCATTCCTAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
17755445 GAAATAGGAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17758539 original size:26 final size:26
Alignment explanation
Indices: 17758509--17758561 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17758499 ATTGACTTAG
17758509 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17758535 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17758561 G
1 G
17758562 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17760569 original size:871 final size:865
Alignment explanation
Indices: 17759244--17762564 Score: 4362
Period size: 871 Copynumber: 3.8 Consensus size: 865
17759234 CATTTCGTCA
* * * ** * * * *
17759244 GTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTATGGTAGC
1 GTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAAGATCAGACCAGACCAAGGGTTACGG-AGC
* * * **
17759309 ACATGCTCGGCTCGAGCTTGTGCTGGTGTTGCATTTTTCTTCGTCGGGGCACCACGCTGGAGCAC
65 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA---T-------
* *
17759374 CATCGTCGGAGCATCGTCGAAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGTGGCCA
120 CA-C--CGGAGCATCGTCGAAGAACCTGACCGACGACATTGGGGTTCCGACGATCGGGG-GG--G
* * *
17759439 GGGGGGCGTGCGCACTTGATGTGCGATGGGTGCTTGTACTTGGCCCTTATATTGGCCCCCTATCC
179 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * *
17759504 CCCATTAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
244 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * * * *
17759569 GTAGCCATTAAAGTGTCTGAAAATGGGGACACTTTATTGAGATGGTCA-AAAATCTTCTACACTT
309 GTAGCCATTAAAGTGCCT-AAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
17759633 CGAGTTTTTAGCTG-ATTTGTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTT
373 CGAGTTTTTAGCTGAATTT-TTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTT
* * *
17759697 TGGGGCCAAAACTCCTTCAAAAAAAATTTGAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATTG
437 TGGGGCCAAAACTCCTTCAAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCG
* * * *
17759762 TGAAAAATAAAAAACGAGTTGTCTTGCCATGAAACTTCACTTGAAGGCTTAAGGGACCATTTTAT
502 TGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACTTGAAGGCTTAAGGGACCATTGTAT
* * *
17759827 GAATTTACAAG-CAGTAAAAAATGGCATTGGCTTGCAGAAATATGAAGATGTGCCTAGACCCACC
567 GAATTTACAAGCCA-T-AAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACC
17759891 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGGGTAGTGCCCGCCCGCCC
630 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGGGTAGT----GCCCGCCC
* **
17759956 GCCCGCTCGTTTAGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAGTGGACTAGA
691 GCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAGTGGACCGGA
* * *
17760021 CCGAGGGTTACGGCAGCAGGATCGGTAGCACACAGAGGGGGACCCGACCAATCCCCGGCTTGCGC
756 CCGAGGGTTACGGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGATCGATCCCCGGCTTGCGC
* *
17760086 ATCTCTCCCCTTTGGCCGGCTGAGCGCCCGCACGCTCG-TTCGTGG
821 ATC-CTCCCCTTTGGCCGGCTGAGCGCTCGCACGCTCGTTTCATGG
* * *
17760131 GTTGACTTAGGCCTACGGACTTTATTTCCAGTCTAAGATCAGACCAGACCAAGGGTTACGGCAGC
1 GTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAAGATCAGACCAGACCAAGGGTTACGG-AGC
* * * *
17760196 ACATGCTGGGCTCGGGCATGTGCTGGTGCAGTATTTTTCTTCGTTGGGGCACCATCATCGGAGCA
65 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCA
* * * * * *
17760261 TCGTCGAAGAACCCGACTGACAATATTGGGGTTCC-AGCGATCGGGGGGGCTGGGGG-GTGCACA
130 TCGTCGAAGAACCTGACCGACGACATTGGGGTTCCGA-CGATCGGGGGGG-GGGGGGTGTGCGCA
* * *
17760324 CATGATGTGTGAGGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCG
193 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
17760389 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
258 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* * *
17760454 GCCCAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTCCACTTCGAGTTTTTAGCTAA
323 GCCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * *
17760519 ATTTTTTTTTGAATGCCAGA-AAAAATACAAGGATCACATCTACAAAGTTTGGGGCCAAAACTCC
388 ATTTTTTTGTGCATGCCA-ACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCC
* *
17760583 TTCAAAAAAAATTTTAAAAAATCCCGAATCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAAT
452 TTCAAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAT
* * *
17760648 GAGTAGTCTGGCCATGAAACTTCA-TGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCA
517 GAGTCGTCTTGCCATGAAACTTCACT-TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* *
17760712 TAAAAATGGCATTGGCATGCAAAAATATGAAGATATGCCTAAACCC-CCTACCACCCTATCGATG
581 TAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * *
17760776 CACGGCTTGCGCATCTCGTCTCTCTGGCC-GGCATAGT----GCCCGCCTGCTCGTTTTGTCGGT
646 CACGGCTTGCGCATCCCGTCTCTCTGGCCAGG-GTAGTGCCCGCCCGCCCGCTCGTTTTGTCGGT
* * ** *
17760836 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAATATTGGACCGGATTGAGGGTTAGGGCAGCAG
710 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAGTGGACCGGACCGAGGGTTACGGCAGCAG
*
17760901 GATCGGCAGCACCCAGAGGGGGACCC-AGTCGATCCCCGGCTTGCGCATCC-CGCCCTTCTGGCC
775 GATCGGCAGCACACAGAGGGGGACCCGA-TCGATCCCCGGCTTGCGCATCCTC-CCCTT-TGGCC
* * *
17760964 GACTGAGCGCTCGCATGCTCGTTTTATGG
837 GGCTGAGCGCTCGCACGCTCGTTTCATGG
* * * * *
17760993 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAGGATCAGACTAGACCGAGGGTTACAGAGGC
1 GTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAAGATCAGACCAGACCAAGGGTTACGGA-GC
*
17761058 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACTATCACCGGAGCA
65 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCA
* ** * *
17761123 TCG-CCAGAGAACCTGACCGGTGGCATTGGGGTTCCGGCGATCGGGGGGTTGGGGGGGTGTGCGC
130 TCGTCGA-AGAACCTGACCGACGACATTGGGGTTCCGACGATCGGGGGG--GGGGGGGTGTGCGC
* * * *
17761187 ACATGATGAGCAAAGGGTGCTAGTACTT-GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
192 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
*
17761251 GAGAACTCGCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
257 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* * *
17761316 TGTCTGAAGTGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
322 TGCCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * ** *
17761381 AATTTTTTTGTGCATGCCAAAAAAAATAAAAGGATCATGTCTACCAAGTTTGGGGTCAAAACT-C
387 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCC
* * * * * *
17761445 TATCCGAAAAAAATTTAAAAAAATCTCGAACTGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAA
452 T-T-CAAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
* * * *
17761510 AGGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCA
515 ATGAGTCGTCTTGCCATGAAACTTCACTTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* *
17761575 ATAAAAATGGCATTGGCAAGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAAT
580 ATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
17761640 CCACGGCTTGCGCATCCCGTCTCTCTGGCCAGGGTAGTGCCCGCCCGCCCGCTCGTTTTGTCGGT
645 CCACGGCTTGCGCATCCCGTCTCTCTGGCCAGGGTAGTGCCCGCCCGCCCGCTCGTTTTGTCGGT
* *
17761705 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAGTGGACCGGACCGAGGGTTCCAGCAGCCA
710 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAGTGGACCGGACCGAGGGTTACGGCAG-CA
* * **
17761770 -GATCGGCAGCACACAGAGGGGGACCCGGTCGA-CCCCTGGCTTGCGCATCCTGCCTCACTGGCC
774 GGATCGGCAGCACACAGAGGGGGACCCGATCGATCCCC-GGCTTGCGCATCCT-CCCCTTTGGCC
*
17761833 AGCTGAGCGCTCGCACGCTCGTTTCATGG
837 GGCTGAGCGCTCGCACGCTCGTTTCATGG
*
17761862 GTTGGCTTAGGCATACGGAGTTCATTTCCAGTCTAAGCATACGGAGTTCATTCCCCATCTAAGAT
1 GTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAAG-AT-C--AG---A-----C--C--AGA-
*
17761927 CGGACTGGACTGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
49 C---C---A---AGGGTTACGG-AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
* * * * *
17761992 TTCATCGGGGCACTATCACCGGAGCATTGTCGGAGAACCTGACCGACGACGTTGGGGTTCCGACG
104 TTCGTCGGGGCACCATCACCGGAGCATCGTCGAAGAACCTGACCGACGACATTGGGGTTCCGACG
*
17762057 ATCGAAGGGGCCGGGGGGGTGTGTGCGCATATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
169 ATCG--GGGG--GGGGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* * * *
17762122 ATTGGCCCCCTATTCCTCATCAAACCTCGAGAACTCACACCCCCTTAAATAACAATTGAGATTTT
229 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* * * *
17762187 ATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAGTTTTTTCAAATGGTCACAA
294 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGCCTAAAATGGGGACACTTTTTTCAAATGGTCACAA
* * *
17762252 AATCTTATACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATACCAACAAAAATACAAGGATCA
359 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
* * * ** * ** * *
17762317 CGTCTACCTATTTTGGGGCCAAGCCTCATTCCGAAAAAATTTTAAAAAATCCTGAATCGTAAAAA
424 CATCTACCAAGTTTGGGGCCAAAACTCCTTCAAAAAAAATTTTAAAAAATCCCGAACCGTAAAAA
* *
17762382 GTTTAAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
489 GTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACTTGAAGGCTTAA
*
17762447 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGC
554 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGC
17762512 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
619 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
17762565 AGCGCCTGTA
Statistics
Matches: 2145, Mismatches: 221, Indels: 125
0.86 0.09 0.05
Matches are distributed among these distances:
859 1 0.00
860 7 0.00
861 148 0.07
862 158 0.07
863 218 0.10
864 184 0.09
865 48 0.02
866 2 0.00
868 6 0.00
869 232 0.11
870 74 0.03
871 330 0.15
872 12 0.01
873 5 0.00
874 46 0.02
876 1 0.00
877 2 0.00
881 1 0.00
884 1 0.00
885 3 0.00
886 1 0.00
887 99 0.05
889 1 0.00
895 107 0.05
896 2 0.00
897 10 0.00
898 233 0.11
899 212 0.10
900 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (865 bp):
GTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAAGATCAGACCAGACCAAGGGTTACGGAGCA
CATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCAT
CGTCGAAGAACCTGACCGACGACATTGGGGTTCCGACGATCGGGGGGGGGGGGGTGTGCGCACAT
GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGCC
TAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
TTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCA
AAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGT
CGTCTTGCCATGAAACTTCACTTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
ATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
CTTGCGCATCCCGTCTCTCTGGCCAGGGTAGTGCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTT
AGGCATACGGAGTTCATTCCCAGTCTAAGAGTGGACCGGACCGAGGGTTACGGCAGCAGGATCGG
CAGCACACAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTCCCCTTTGGCCGGCTGAGCG
CTCGCACGCTCGTTTCATGG
Found at i:17761922 original size:26 final size:26
Alignment explanation
Indices: 17761872--17761924 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17761862 GTTGGCTTAG
*
17761872 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17761898 GCATACGGAGTTCATTCCCCA-TCTAA
1 GCATACGGAGTTCATT-CCCAGTCTAA
17761924 G
1 G
17761925 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17762637 original size:26 final size:26
Alignment explanation
Indices: 17762599--17762651 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17762589 GTTGACTTAG
* *
17762599 GCATACAGTGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17762625 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17762651 G
1 G
17762652 ATTGAACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17764402 original size:26 final size:26
Alignment explanation
Indices: 17764372--17764424 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17764362 GTTGACTTAG
17764372 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
17764398 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17764424 G
1 G
17764425 ATTGAACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17765576 original size:612 final size:617
Alignment explanation
Indices: 17764406--17765634 Score: 1719
Period size: 612 Copynumber: 2.0 Consensus size: 617
17764396 AAGCATACAG
** * *
17764406 AGTTCATTCCCAGTCTAAGATTGAACCGGACCAAGGGTTGCGGTAGCACATGCTAGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGAACGAACCGGACCAAGGGTTACGGCAGCACATGCTAGGCTCGGGCA
* * ** *
17764471 TGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC
66 TGTGCTGGTGCCCTATTTTTCTTCGCCAAGGCACCATCGTCAGAGCATCGTCGGAGAACCTGACC
** *
17764536 AGCGGCATTGGGGTTCCGACGAACAGGGGGGCCGGTGGGGCTGTAAGCACATGATGTGCGATGGG
131 AGCGGCATTGAAGTTCCGACGAACAGGGGGGCCGGTGGGGCTGTAAGCACATGATGTGAGATGGG
*
17764601 TGCTGGTACGTGGCCCTTATACTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAACCCCT
196 TGCTGGTACGTGGCCCTTATACTGGCCCCCTATCCCTCATCAAACCTAGAGAACTCACAACCCCT
*
17764666 TAAAGAGCATTTGAGATTTTAAGAGTTTGATGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACA
261 TAAAGAGCATTTGAGATTTTAAGAGTTT-ATGCCA-TAGCCATTAAAGTGTCTGAAATGGGGACA
* *
17764731 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTTAGCTGAATTTTTTTTGCATGCC
324 CTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCAAGTTCTTAGCTGAATTTTTTTTGCATGCC
* * * *
17764796 AACAAAATACAAGGATGACGTCTACCAAGTTTGGCGCCAAAACTCCTTCCAAAAAAATTTTAAAA
389 AAAAAAATACAAGGATCACGCCTACCAAGTTTGGCGCCAAAAATCCTTCCAAAAAAATTTTAAAA
*** * * *
17764861 AATCTTGAACCGAAAAATGTTTCGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAA
454 AATCCAAAACCGAAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGCCATCTTGCCACGAAA
* * * **
17764926 CTTCACGTGAACGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
519 CTTCACATGAACGCCTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGGCATTGGCACAC
*
17764991 AGAAATATGAAGATATGCCTAAACGCACCTACGA
584 AGAAATATGAAGATATGCCTAAACCCACCTACGA
* * * * * *
17765025 AGTTCATTCCCAGTCTAAGAACGGACTGGACCGAGGGTTACGGCAGCACATGTTGGGCTCTGGCA
1 AGTTCATTCCCAGTCTAAGAACGAACCGGACCAAGGGTTACGGCAGCACATGCTAGGCTCGGGCA
* *
17765090 TGTGCTGGTGCCACT-TTTTTCTTTGCCAAGGCACCATCGTCAGAGCGTCGTCGGAGAACCTGAC
66 TGTGCTGGTGCC-CTATTTTTCTTCGCCAAGGCACCATCGTCAGAGCATCGTCGGAGAACCTGAC
** * * **
17765154 C-GACGGCATTGAAGTTCCGGTGATC-GGGGGGATCGG-GGGG-TGTGCGCACATGATGTGAGAT
130 CAG-CGGCATTGAAGTTCCGACGAACAGGGGGG-CCGGTGGGGCTGTAAGCACATGATGTGAGAT
* * * *
17765215 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTAGAGAACTCGCACCC
193 GGGTGCTGGTACGTGGCCCTTATACTGGCCCCCTATCCCTCATCAAACCTAGAGAACTCACAACC
17765280 CCTTAAAGAGCATTTGAGATTTTACAG-G-TT-TG-C-T-GCCATTAAAGTGTCTGAAATGGGGA
258 CCTTAAAGAGCATTTGAGATTTTA-AGAGTTTATGCCATAGCCATTAAAGTGTCTGAAATGGGGA
* *
17765339 CACTTTTTTCAAATGTTCAAAAAATCTTGTACACTTCAAGTT-TGTAGTTGAATTTTTTTGTGCA
322 CACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCAAGTTCT-TAGCTGAATTTTTTT-TGCA
* * * *
17765403 TGCCAAAAAAAATACAAGGATCATGCCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAAATTT
385 TGCC-AAAAAAATACAAGGATCACGCCTACCAAGTTTGGCGCCAAAAATCCTTCCAAAAAAATTT
* *
17765468 TAAAAAATCCAAAACC-ACAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGCCGTCTTGCC
449 TAAAAAATCCAAAACCGA-AAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGCCATCTTGCC
* *
17765532 ACGAAACTTCACATGAAGGCCTAAGGGACCATTGTATGAATTTACAAGAGATAAAAATGGCATTG
513 ACGAAACTTCACATGAACGCCTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGGCATTG
* *
17765597 GCACATAGAAATATGAAGATGTGCCTAAACCCACCTAC
578 GCACACAGAAATATGAAGATATGCCTAAACCCACCTAC
17765635 CACCCTATCG
Statistics
Matches: 540, Mismatches: 62, Indels: 23
0.86 0.10 0.04
Matches are distributed among these distances:
609 1 0.00
610 77 0.14
611 10 0.02
612 199 0.37
613 1 0.00
614 2 0.00
616 2 0.00
617 103 0.19
618 13 0.02
619 131 0.24
620 1 0.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (617 bp):
AGTTCATTCCCAGTCTAAGAACGAACCGGACCAAGGGTTACGGCAGCACATGCTAGGCTCGGGCA
TGTGCTGGTGCCCTATTTTTCTTCGCCAAGGCACCATCGTCAGAGCATCGTCGGAGAACCTGACC
AGCGGCATTGAAGTTCCGACGAACAGGGGGGCCGGTGGGGCTGTAAGCACATGATGTGAGATGGG
TGCTGGTACGTGGCCCTTATACTGGCCCCCTATCCCTCATCAAACCTAGAGAACTCACAACCCCT
TAAAGAGCATTTGAGATTTTAAGAGTTTATGCCATAGCCATTAAAGTGTCTGAAATGGGGACACT
TTTTTCAAATGGTCAAAAAATCTTGTACACTTCAAGTTCTTAGCTGAATTTTTTTTGCATGCCAA
AAAAATACAAGGATCACGCCTACCAAGTTTGGCGCCAAAAATCCTTCCAAAAAAATTTTAAAAAA
TCCAAAACCGAAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGCCATCTTGCCACGAAACT
TCACATGAACGCCTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGGCATTGGCACACAG
AAATATGAAGATATGCCTAAACCCACCTACGA
Found at i:17767345 original size:26 final size:27
Alignment explanation
Indices: 17767289--17767347 Score: 66
Period size: 26 Copynumber: 2.2 Consensus size: 27
17767279 AGTCCTTCTG
**
17767289 AAAAAATTTTAAAAAATCCTGAACCAC
1 AAAAAATTTTAAAAAATCCTGAAAAAC
* * *
17767316 AAAAAGTTTT-AAAAATCGTGAAAAAT
1 AAAAAATTTTAAAAAATCCTGAAAAAC
17767342 AAAAAA
1 AAAAAA
17767348 CGAGTCGTCT
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
26 17 0.65
27 9 0.35
ACGTcount: A:0.61, C:0.10, G:0.07, T:0.22
Consensus pattern (27 bp):
AAAAAATTTTAAAAAATCCTGAAAAAC
Found at i:17770192 original size:711 final size:712
Alignment explanation
Indices: 17766135--17770431 Score: 5572
Period size: 700 Copynumber: 6.1 Consensus size: 712
17766125 CCCAGTCTAA
* * ** *
17766135 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATTGAGGGTTGCGGCAGCACATGCTGGG
* ** * * *
17766200 CTCGGGCATGTGCTGGTGCCATATTTTTCTTTAC--CGGGGCACCATCATTGGAGTATCATCGGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTC--TACGTCGGGGCACCATCACCGAAGCATCACCGGA
* * * * * *
17766263 CATCCTAACCAGCGGCATTGGGGTT-C-AGGTATCGGGGGGCTCGGGGGGTGTGCACACATGATG
129 GAACCTGACGA-CGGCATTGGGGTTCCGACG-ATCGGGGGGC-CGGGGGGTGTGCGCACATGATG
* * * *
17766326 TGCGATGGGTGCTGATACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTG
191 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* * *
17766391 ACACCCCCTTAAAGAGCACTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAATGTCTGAA
256 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
17766456 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATATTT
321 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * * *
17766521 TGTGCATGCCAACAAAAATACAAGGATCACATCTAAAAAGGTTGGGCCCAAAACTCCTTCCGAAC
386 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAAATCCTTCCGAAA
* * * * * * *
17766586 AAATTTTAAAAAAT-CTCAAACCGTAAAATGTTTCAAAAATTATGAAAAGTGGAAAACAAATCGT
451 AAATTTTAAAAAATCCT-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
17766650 CTTGCCATGAAACTTCACGTGAAGGCCTAAGGGACCATTGTTTGAATTTACAAGCCATAAAAATG
515 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
17766715 GCATTGGCACAT--AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
580 GCATTGG-ACATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * *
17766778 TTGCGCATCCCGCCCCTTTGGCCGGC--TG-AG-CG---CCAGTAC-GCTCGTTTCAT-GGCTTG
644 TTGCGCATCCCGTCTCTCTGGCCGGCGTTGTAGCCGCCCCCCG-CCTGCTCGTTTCGTCGG-TTG
*
17766834 ACTTAG
707 GCTTAG
* * *
17766840 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGATTGAGGGTTGTGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATTGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
17766905 CTTGGGCATGTGCTGGGGCCGTATTTTTCCTCAC-T-GGGAC-CCATCGCC-AGAGCTTCACCGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTT-CT-ACGTCGGGGCACCATCACCGA-AGCATCACCGG
* * * * *
17766966 AAAACTTGACCGGCGGCATTGGGGTTCCGACGATCAAGGGGGCCAATGGGGGTGTGCGCACATGA
128 AGAACCTGA-CGACGGCATTGGGGTTCCGACGATC-GGGGGGCC--GGGGGGTGTGCGCACATGA
**
17767031 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGGAGAAC
189 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAAC
*
17767096 TCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA-CCTATTAAAGTGTCC
254 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC-ATTAAAGTGTCT
* * *
17767159 AAAATGGGGACACTTTTTTCAAATGGTCACAAAATGTTGTACACTTCGATTTTTTAGCTGAATTT
318 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * * ** * *
17767224 TTTT-TCGCAAGCCAATAAAAATACAGGGATCACGTCTACCAAGTTTGGGGTGAAAAGTCCTTCT
383 TTTTGT-GCATGCCAACAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAAATCCTTCC
** * * *
17767288 GAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTTAAAAATCGTGAAAAATAAAAAACGAGT
447 GAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
17767353 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
512 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* *
17767418 ATGGCATTGGCACAT--AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAAACCAC
577 ATGGCATTGG-ACATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * ** * *
17767481 GGCTTGCGCATCCTGTCTCTCTGGCCAGCGTAGTGCCCGCCTGCCCGCCCACCCGCTCGTTTCGT
641 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGT--TG-TAGCC-GCCC-CCCGCCTGCTCGTTTCGT
*
17767546 CGGATGGCTTAG
701 CGGTTGGCTTAG
* ** * * *
17767558 GCATAAGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGACAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATTGAGGGTTGCGGCAGCACATGCTGGG
* * *** * * * *
17767623 CTCGGGCATGGGCTGGTGTCGTATTTTTCTTTATCGGGGCACCATCGCCGGAGCATCGCCAGAGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTACGTCGGGGCACCATCACCGAAGCATCACCGGAGA
* * * * * * *
17767688 ACCTGATCGGCAGCGTTGGGGTTCTGACGATCGAAGAGGCCGGGGGGTGTGCGCACATGATATGC
131 ACCTGA-CGACGGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
17767753 GATGGGTGCTGGTACATGGCCCTTATATTGCCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
* *
17767818 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAATGTGTCTAAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-
* *
17767883 GGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGA-TTTTTAGCTGATTTTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * ** * *
17767947 TGCAAGCCAAAAAAAATACGAGTCTCACGTTTACAAAGTTTGGGGCCAAAAATCCTTCTGAAAAA
388 TGCATGCCAACAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAAATCCTTCCGAAAAA
* * * *
17768012 ATTTTAAAAAATCCCGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTT
453 ATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
17768077 GCCATGAAACTTCACATGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
17768142 TTGGA-ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTCGC
583 TTGGACATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
17768206 GCATCCCGTCTGTCTGGCCGGCGTTGT-GCCGCCCCCCGCCTGCTCGTTTTGTCGTTTGGCTTAG
648 GCATCCCGTCTCTCTGGCCGGCGTTGTAGCCGCCCCCCGCCTGCTCGTTTCGTCGGTTGGCTTAG
* * * ** * *
17768270 GCATACGAAGTGCATTCCCAGTCTAAGATCGGACTGGATTGAGGGTTGCGGTAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATTGAGGGTTGCGGCAGCACATGCTGGG
* **
17768335 CTCGGGCATGTGCTGGTGCCGTATTTTTCTACGTCGGGGCACCATCACCGAAGCGTCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTACGTCGGGGCACCATCACCGAAGCATCACCGGAGA
* *
17768400 ACCTGACGAC-GAATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCAA
131 ACCTGACGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
*
17768464 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCAAGAACTCACACC
196 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
* *
17768529 CCCTTAAAGAGCATTTGAGATTTTACAGCTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAATGGG
261 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* *
17768594 GACACTATTTTCAAATGGTCACAAAATCTTGTACACTTC-ATATTTTTAGCTGAATTTTTTTGTG
326 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA-GTTTTTAGCTGAATTTTTTTGTG
** * * *
17768658 CACACCAAAAAAAATACAAGGATCACTTCTACAAAGTTTGGGGCTAAAAATCCTTCCGAAAAAAT
390 CATGCCAACAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAAATCCTTCCGAAAAAAT
** * ** * *
17768723 TTTAAAAAATCCCCAACCATAAAAAGTTTTGAAAATCTTGAAAAATAGAAAACGAGTCATCTTGC
455 TTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* *
17768788 CATGAAACTTCACGTGAAGGCTTAAGGGACTATTGTATGAATTTACAAGCCATAAAAATGGTATT
520 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * * * *
17768853 GG-CACGTAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATACATGGCTTACGC
585 GGACATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * ** *
17768917 ATCCCATCTCTTTGGTTGGCG--G-AG-TG---CCCG-CT--T-GTTTCGTCGGTTGGCTTAG
650 ATCCCGTCTCTCTGGCCGGCGTTGTAGCCGCCCCCCGCCTGCTCGTTTCGTCGGTTGGCTTAG
* * * * * * * *
17768969 GCATACGGAGTTTATTCCCAGTCTATGATCAGACCAGATCGACGATTGCAGTAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATTGAGGGTTGCGGCAGCACATGCTGGG
* * * * ****
17769034 CTCGAGCATGTGCTGTTGCCGTATTTTTCTTCGCCGGGGCACCATCGTTAAAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTACGTCGGGGCACCATCACCGAAGCATCACCGGAGA
***
17769099 ACCTGACGGTTGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
131 ACCTGACGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
**
17769164 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGGAGAACTCACACC
196 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
* *
17769229 CCCTTAAAGAGCATTTGAGATGTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
261 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* *
17769294 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGATTTTTTTTGTGC
326 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * * * * * * *
17769359 ATGACAACAAAAATAAAAGGACCACGTCTACCAAGTATGGGGCAAAAAATGCTTCCAAAAAAAAT
391 ATGCCAACAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATT
* *
17769424 TTAGAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
456 TTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* * *
17769489 ATAAAACTTCACATGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGCATTG
521 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* *
17769554 GA-ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTCGCGCA
586 GACATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * *
17769618 TCCCGTCTGTCTGGCCGGCGTTGTGGCCGCCCCCCGCCTGCTCGTTTCGTCGTTTGGCTTAG
651 TCCCGTCTCTCTGGCCGGCGTTGTAGCCGCCCCCCGCCTGCTCGTTTCGTCGGTTGGCTTAG
* * * ** * *
17769680 GCATACGAAGTGCATTCCCAGTCTAAGATCGGACTGGATTGAGGGTTGCGGTAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATTGAGGGTTGCGGCAGCACATGCTGGG
* **
17769745 CTCGGGCATGTGCTGGTGCCGTATTTTTCTACGTCGGGGCACCATCACCGAAGCGTCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTACGTCGGGGCACCATCACCGAAGCATCACCGGAGA
* *
17769810 ACCTGATCGAC-GAATTGGGGTTCCGACGATCGGGGGGTCAGGGGGGTGTGCGCACATGATGTGC
131 ACCTGA-CGACGGCATTGGGGTTCCGACGATCGGGGGG-CCGGGGGGTGTGCGCACATGATGTGC
* *
17769874 AATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCAAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
17769939 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
17770004 GGGACAC-TTTTTCAAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATTTTTTTA
324 GGGACACTTTTTTC-AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
17770068 TTCATGCCAA-AAAAATAGAAGGATCACGTCTAAAAAGTTTGGGGCCAAAAATCTTTCCAAAAAA
388 TGCATGCCAACAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAAATCCTTCCGAAAAA
**
17770132 ATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCACAAAAAATAGAAAACGAGTCGTCTT
453 ATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
17770197 GCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
17770262 TT-CACATGCAGAAATATGAAGATTTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGC
583 TTGGACATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * **
17770326 GTATCCCGTCTCTATGTCTGAC-TTAGTA-------CCCGCCCACTCGTTTCGTCGGTTGGCTTA
648 GCATCCCGTCTCTCTGGCCGGCGTT-GTAGCCGCCCCCCGCCTGCTCGTTTCGTCGGTTGGCTTA
17770383 G
712 G
* ** *
17770384 GCATACGGAGATCATTCCCAGTCTAAGATTGGATCAGATTGAGGGTTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATTGAGGGTTG
17770432 TGGTAGCAAG
Statistics
Matches: 3145, Mismatches: 386, Indels: 123
0.86 0.11 0.03
Matches are distributed among these distances:
699 131 0.04
700 473 0.15
701 1 0.00
702 3 0.00
703 5 0.00
704 100 0.03
705 98 0.03
706 369 0.12
707 92 0.03
708 42 0.01
709 414 0.13
710 24 0.01
711 407 0.13
712 356 0.11
713 5 0.00
714 4 0.00
716 4 0.00
717 88 0.03
718 433 0.14
719 96 0.03
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (712 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATTGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGTATTTTTCTACGTCGGGGCACCATCACCGAAGCATCACCGGAGA
ACCTGACGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATT
TTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GACATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGGCGTTGTAGCCGCCCCCCGCCTGCTCGTTTCGTCGGTTGGCTTAG
Found at i:17771433 original size:26 final size:26
Alignment explanation
Indices: 17771394--17771446 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17771384 GTTGACTTAG
17771394 GCATACAGAATTCATTCCCAATCTAA
1 GCATACAGAATTCATTCCCAATCTAA
* *
17771420 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAATTCATTCCCAATCTAA
17771446 G
1 G
17771447 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.34, C:0.26, G:0.13, T:0.26
Consensus pattern (26 bp):
GCATACAGAATTCATTCCCAATCTAA
Found at i:17774675 original size:185 final size:184
Alignment explanation
Indices: 17774354--17774717 Score: 489
Period size: 185 Copynumber: 2.0 Consensus size: 184
17774344 TTAGGCATAT
* * * *
17774354 GGAGTTCATCCCCAGTCTAAGATTGGACCAGACCGAGGGTTACGACAGCAGGATCGACAGCACGT
1 GGAGTTCATCCCCAGTCTAAGATTGGACCAGACCAAGGCTTACGACAACAGGATCGACAGCACGC
* ** * * *
17774419 AGAGGGGGACCCGGTCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAG
66 AGAAGGGGACCCGACCGATCCCCGACTTACGCATCCCGCCCCTCTGGCCGGCTGAGCCCCCGCAC
17774484 GCTCGTTCCGTGGGTTAACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCAAAC
131 GCTCGTTCCGTGGGTTAACTTAGGCATA-GAAGTTCATTCCCAGTCTAAGCAAAC
* * * * **
17774539 GGAGTTCATTCCCAGTCTAAGATTGGATCAGACCAAGGCTTGC-AGCAACAGGATTGGTAGCACG
1 GGAGTTCATCCCCAGTCTAAGATTGGACCAGACCAAGGCTTACGA-CAACAGGATCGACAGCACG
* * *
17774603 CGGAAGGGGACCCGACCGATCCCCGACTTACGCATCTCC-CCCTTCTGGCCGGTTGAGCCCCCGC
65 CAGAAGGGGACCCGACCGATCCCCGACTTACGCATC-CCGCCCCTCTGGCCGGCTGAGCCCCCGC
* * *
17774667 ACGCTCGTTTCGTGGGTTGACTTAGGCATAGGAGTTCATTCCCAGTCTAAG
129 ACGCTCGTTCCGTGGGTTAACTTAGGCATAGAAGTTCATTCCCAGTCTAAG
17774718 ATCGGATCGA
Statistics
Matches: 155, Mismatches: 22, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
184 21 0.14
185 132 0.85
186 2 0.01
ACGTcount: A:0.21, C:0.30, G:0.28, T:0.20
Consensus pattern (184 bp):
GGAGTTCATCCCCAGTCTAAGATTGGACCAGACCAAGGCTTACGACAACAGGATCGACAGCACGC
AGAAGGGGACCCGACCGATCCCCGACTTACGCATCCCGCCCCTCTGGCCGGCTGAGCCCCCGCAC
GCTCGTTCCGTGGGTTAACTTAGGCATAGAAGTTCATTCCCAGTCTAAGCAAAC
Found at i:17775597 original size:26 final size:26
Alignment explanation
Indices: 17775558--17775610 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17775548 GTTGACTTAG
*
17775558 GCATATAGAATTCATTCCCAGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
*
17775584 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
17775610 G
1 G
17775611 ATCGGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAATTCATTCCCAGTCTAA
Found at i:17776478 original size:26 final size:26
Alignment explanation
Indices: 17776442--17776494 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17776432 GTTGACTTAC
*
17776442 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17776468 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17776494 G
1 G
17776495 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17776923 original size:895 final size:886
Alignment explanation
Indices: 17774851--17777061 Score: 3235
Period size: 895 Copynumber: 2.5 Consensus size: 886
17774841 TTCCGGCGAT
17774851 CGGGGGGTGTGCGCACAA-GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
1 CGGGGGGTGTGCGCA-AATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
*
17774915 CCCTCATCAAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
65 CCCTCATC-AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
17774980 CCTGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTAGTACAC
129 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* *
17775045 TTCGAGTTTTTAGGTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCACATCTACC-AGC
194 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAG-
* * * *
17775109 TTTGGGGCCAAAACTTCTTCCAAAAAGTTTTAAAAAATCTTGAACCGCAAAAAGTTTCAAAAATC
258 TTTGGGGCCAAAACTCCTTCCAAAAAATTTTAAAAAATCCTAAACCGCAAAAAGTTTCAAAAATC
* *
17775174 ATGAAAAATAGAAAACCAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
323 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
17775239 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCAACCT
388 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCAACCT
* *
17775304 ACCACCATATCGATTCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCATAGTGCCTGCCCGCCAA
453 ACCACCATATCGATTCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCATAG-G-CTGCCCG---A
** *
17775369 CCCGCCCGCTCGTTTCGTCGGTTGTTTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAATT
513 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAACT
* * * ** * * *
17775434 GGATTGAGGGTTGTGGGAGCAAGACCGGTAGCACACAGAGTGGGACGCGGTCAATCCCCGGCTTG
578 GGACTGAGGGTTATGGCAGCAAGACCGACAGCACACAGAGGGGGACCCGATCAATCCCCGGCTTG
** * * * * *
17775499 AGCATCCCGCCCCTTTGGTCGGCTGAGCACTCGCACACTCGTTTCGTGGGTTGACTTAGGCATAT
643 AGCATCCCGCCCCCCTGGCCGACTGAGCACTCGCACACTCATTTCGTGGGTTGACTTACGCATAC
* * *
17775564 AGAATTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGG
708 AGAATTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGACGG
*
17775629 TTGTGGTAGCACATGCTAGGCTTGGGCATGTGCTAGTGCCGCATTTTTCTTCTCCGGGGCACCAT
773 TTGTGGTAGCACATGCTAGGCTCGGGCATGTGCTAGTGCCGCATTTTTCTTCTCCGGGGCACCAT
*
17775694 CGTCGCAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCC
838 CGTCGCAGAACCTGACCGACAGCATTGGGGTTCCGACGATCGGGGGGCC
* *
17775743 CGGGGGGTGTGTGCATATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
1 CGGGGGGTGTGCGCAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
** *
17775808 CCTCATCGGACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCC
66 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
***
17775873 AGTAAAAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
131 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * * * * *
17775938 CGGGTTTTTAGCTAAATGTTTTTGTGCGTGCCAACAAAAATACAGGGATCACGTCTACCAAGTTT
196 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTT
* *
17776003 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCT-CACAGCAAAAAGTTTCAAAAATCG
261 GGGGCCAAAACTCCTTCC-AAAAAATTTTAAAAAAT-CCTAAACCGCAAAAAGTTTCAAAAATCG
*
17776067 TCAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
324 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
*
17776132 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
389 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCAACCTA
* * * *
17776197 CCACCCTATCGA-TCCCTGGCTTGCGCATCCTGTCTCTCTAGCCGGCGTA-G-TGCCCG-CCCGC
454 CCACCATATCGATTCAC-GGCTTGCGCATCCCGTCTCTCTAGCCGGCATAGGCTGCCCGACCCGC
* * * *
17776258 CCGTTCGTTTCGTCGGTTGGCTTATGCATATGGAGTTCATTCCTAGTCTAAGATT-AGACTGGAC
518 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGA-ACTGGAC
* ** * * * *
17776322 TGAGGGTTATGGCAGCAGGACCGACAGC-CTGTAGAGGGGGACCCGATCGATCTCTGGCTTGTGC
582 TGAGGGTTATGGCAGCAAGACCGACAGCAC-ACAGAGGGGGACCCGATCAATCCCCGGCTTGAGC
* *
17776386 ATCCCGCCCCCCTGGCCGACTGAACGC-CT-GCACTCTCATTTCGTGGGTTGACTTACGCATACG
646 ATCCCGCCCCCCTGGCCGACTG-A-GCACTCGCACACTCATTTCGTGGGTTGACTTACGCATACA
* *
17776449 GAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGACGGT
709 GAATTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGACGGT
* * * *
17776514 TGT-GTCAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGT-CGGGGCACCA
774 TGTGGT-AGCACATGCTAGGCTCGGGCATGTGCTAGTGCCGCATTTTTCTTC-TCCGGGGCACCA
* * * *
17776577 TCGTCGATGCATCGCCGGATAACCTGACTGGCAGCATTGGGGTTCTGACGATCGGGGGGGC
837 TCGTC---GCA------G--AACCTGACCGACAGCATTGGGGTTCCGACGATCGGGGGGCC
*
17776638 CGGGGGGTGTGCGCAAATGATGTTCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
1 CGGGGGGTGTGCGCAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
*
17776703 CATCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
66 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* *
17776768 AATAGCCATTGAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
131 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
17776833 CGAGTTTTTAGCTGAATTTTTTTGTGCATG-CAACAAAAATACAAGGATCACATCTACCAAGTTT
196 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTT
* * * *
17776897 GGGGCAAAAACACCTTCCAAAAAAAATTTTAAAAAATCCTAAACCGTAAAAAGTTCCAAAAATCG
261 GGGGCCAAAACTCCTTCC--AAAAAATTTTAAAAAATCCTAAACCGCAAAAAGTTTCAAAAATCG
*
17776962 TGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
324 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
*
17777027 GAATTTACAAGCCATAGAAATGGCATTGGCATGCA
389 GAATTTACAAGCCATAAAAATGGCATTGGCATGCA
17777062 CCTAAACCCA
Statistics
Matches: 1187, Mismatches: 108, Indels: 45
0.89 0.08 0.03
Matches are distributed among these distances:
883 4 0.00
884 272 0.23
885 4 0.00
886 2 0.00
887 3 0.00
888 6 0.01
890 1 0.00
891 189 0.16
892 273 0.23
893 3 0.00
894 51 0.04
895 379 0.32
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (886 bp):
CGGGGGGTGTGCGCAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTT
GGGGCCAAAACTCCTTCCAAAAAATTTTAAAAAATCCTAAACCGCAAAAAGTTTCAAAAATCGTG
AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCAACCTACC
ACCATATCGATTCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCATAGGCTGCCCGACCCGCCCG
CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAACTGGACTGAG
GGTTATGGCAGCAAGACCGACAGCACACAGAGGGGGACCCGATCAATCCCCGGCTTGAGCATCCC
GCCCCCCTGGCCGACTGAGCACTCGCACACTCATTTCGTGGGTTGACTTACGCATACAGAATTCA
TTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGACGGTTGTGGTA
GCACATGCTAGGCTCGGGCATGTGCTAGTGCCGCATTTTTCTTCTCCGGGGCACCATCGTCGCAG
AACCTGACCGACAGCATTGGGGTTCCGACGATCGGGGGGCC
Found at i:17777194 original size:26 final size:26
Alignment explanation
Indices: 17777158--17777210 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17777148 GTTGACTTTG
17777158 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
17777184 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
17777210 G
1 G
17777211 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:17777738 original size:715 final size:716
Alignment explanation
Indices: 17776420--17777772 Score: 2110
Period size: 715 Copynumber: 1.9 Consensus size: 716
17776410 CGCCTGCACT
*
17776420 CTCATTTCGTGGGTTGACTTACGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTC
1 CTCATTTCGTGGGTTGACTTACGCATACGGAGTTCATTCCCAATCTAAGCATACAGAGTTCATTC
* * * * * *
17776485 CCAGTCTAAGATCAGACCGGACCGACGGTTGTGTCAGCACATGTTGGGCTCGGGCATGTGCTGGT
66 CCAGTCTAAGATCAGACCAGACCGACGGTTGCGGCAGCACATGCTAGGCTCAGGCATGTGCTGGT
* ** * * *
17776550 GCCGTATTTTTCTTCGTCGGGGCACCATCGTCGATGCATCGCCGGATAACCTGACTGGCAGCATT
131 GCCGTATTTCTCTTCGTCGGGGCACCATCACCGAAGCATCGCCGGAGAACCTGACTGACAGCATT
* ** * * *
17776615 GGGGTTCTGACGATCGGGGGGGCCGGGGGGTGTGCGCAAATGATGTTCGATGGGTGCTGGTACTT
196 GAGGTTCCAACGATCGGGGGGGCCAGAGGGTGTGCGCAAATGATGTGCGATGGGTGCTGGTACTT
*
17776680 GGCCCTTATATTGGCCCCCTATCCATCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
261 GGCCCTTATATTGGCCCCCTATCCATCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATT
* *
17776745 TGAGATTTTACAGGTTTGCTGCCAATAGCCATTGAAGTGTCTGAAATGGGGACACTTTTTTCAAA
326 TGAGATTTTACAGGCTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
**
17776810 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCAACAAAAATAC
391 TGGTCACAAAATCTTGTACACCGCGAGTTTTTAGCTGAATTTTTTTGTGCATGCAACAAAAATAC
* *
17776875 AAGGATCACATCTACCAAGTTTGGGGCAAAAACACCTTCCAAAAAAAATTTTAAAAAATCCTAAA
456 AAGGATCACATCAACCAAGTTTGGGGCAAAAACACCATCCAAAAAAAATTTTAAAAAATCCTAAA
* *
17776940 CCGTAAAAAGTTCCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTG
521 CCGTAAAAAGTTCCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
** *
17777005 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAGAAATGGCATTGGCATGCACCTAAACC
586 AAGGCTTAAGGGACCATTGTACAAATTTACAAGCCATAAAAATGGCATTGGCATGCACCTAAACC
17777070 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGACATAGTGCCCACAT
651 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGACATAGTGCCCACAT
17777135 G
716 G
** *
17777136 CTCA-TTCTGTGGGTTGACTTTGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATT
1 CTCATTTC-GTGGGTTGACTTACGCATACGGAGTTCATTCCCAATCTAAGCATACAGAGTTCATT
* *
17777200 CCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCTGCACATGCTAGGCTCAGGCATGTGCTGG
65 CCCAGTCTAAGATCAGACCAGACCGACGGTTGCGGCAGCACATGCTAGGCTCAGGCATGTGCTGG
*
17777265 TGCCGTATTTCTCTTCGTCGGGGCACCATCACCGAAGCATCGTCGGAGAACCTGA-TCGAC-GAC
130 TGCCGTATTTCTCTTCGTCGGGGCACCATCACCGAAGCATCGCCGGAGAACCTGACT-GACAG-C
* * * *
17777328 ATTGAGGTTCCAATGATC-GGGGGGCTAGAGGGTGTGCGCACATGATGTGCGGTGGGTGCTGGTA
193 ATTGAGGTTCCAACGATCGGGGGGGCCAGAGGGTGTGCGCAAATGATGTGCGATGGGTGCTGGTA
*
17777392 CTTGGCCCTTATATTAGG-CCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAG
258 CTTGGCCCTTATATT-GGCCCCCTATCCATCATCAAACCTCAAGAACTCACACCCCCTTAAAGAG
**
17777456 CATTTGAGATTTTACAGGCTTGCTGCCTGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
322 CATTTGAGATTTTACAGGCTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
17777521 CAAATGGTCACAAAATCTTGTACACCGCGAGTTTTTAGCTGAATTTTTTTGTGCATGACAACAAA
387 CAAATGGTCACAAAATCTTGTACACCGCGAGTTTTTAGCTGAATTTTTTTGTGCATG-CAACAAA
* * *
17777586 AATACAAGGATCACGTCAACCAAGTTTGGGGCCAAAAA-TCCATCC-GAAAAAATTTTAAAAAAT
451 AATACAAGGATCACATCAACCAAGTTTGGGG-CAAAAACACCATCCAAAAAAAATTTTAAAAAAT
* * * * *
17777649 -TTCAAACCGTAAAAAGTTTCAAAAATTATGGAAAATAGAAAACGAGTTGTCTTGCCATGAAACT
515 CCT-AAACCGTAAAAAGTTCCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
*
17777713 TCACGTGAAGGCTTAAGGGACCATTGTACAAATTTAGAAGCCATAAAAATGGCATTGGCA
579 TCACGTGAAGGCTTAAGGGACCATTGTACAAATTTACAAGCCATAAAAATGGCATTGGCA
17777773 CGTAGAAATA
Statistics
Matches: 577, Mismatches: 53, Indels: 15
0.89 0.08 0.02
Matches are distributed among these distances:
714 1 0.00
715 348 0.60
716 222 0.38
717 6 0.01
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (716 bp):
CTCATTTCGTGGGTTGACTTACGCATACGGAGTTCATTCCCAATCTAAGCATACAGAGTTCATTC
CCAGTCTAAGATCAGACCAGACCGACGGTTGCGGCAGCACATGCTAGGCTCAGGCATGTGCTGGT
GCCGTATTTCTCTTCGTCGGGGCACCATCACCGAAGCATCGCCGGAGAACCTGACTGACAGCATT
GAGGTTCCAACGATCGGGGGGGCCAGAGGGTGTGCGCAAATGATGTGCGATGGGTGCTGGTACTT
GGCCCTTATATTGGCCCCCTATCCATCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATT
TGAGATTTTACAGGCTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
TGGTCACAAAATCTTGTACACCGCGAGTTTTTAGCTGAATTTTTTTGTGCATGCAACAAAAATAC
AAGGATCACATCAACCAAGTTTGGGGCAAAAACACCATCCAAAAAAAATTTTAAAAAATCCTAAA
CCGTAAAAAGTTCCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
AAGGCTTAAGGGACCATTGTACAAATTTACAAGCCATAAAAATGGCATTGGCATGCACCTAAACC
CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGACATAGTGCCCACAT
G
Found at i:17778091 original size:26 final size:26
Alignment explanation
Indices: 17778055--17778107 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17778045 GTTGACCTAG
17778055 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATTGCCAGTCTAA
17778081 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATTGCCAGTCTAA
17778107 G
1 G
17778108 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTGCCAGTCTAA
Found at i:17779756 original size:26 final size:26
Alignment explanation
Indices: 17779720--17779798 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
17779710 GTTGACTTAG
* *
17779720 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17779746 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
17779772 GCATACGAAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17779798 G
1 G
17779799 ATCAATCCGA
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17781567 original size:26 final size:26
Alignment explanation
Indices: 17781531--17781580 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
17781521 TGACTTAGGC
17781531 ATACGGAGTTCATTCCCAATCTAAGT
1 ATACGGAGTTCATTCCCAATCTAAGT
* *
17781557 ATACGGAGTTCATTCTCAGTCTAA
1 ATACGGAGTTCATTCCCAATCTAA
17781581 TATCGAACCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.32
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAATCTAAGT
Found at i:17781950 original size:900 final size:890
Alignment explanation
Indices: 17779216--17784092 Score: 5933
Period size: 890 Copynumber: 5.4 Consensus size: 890
17779206 CAAGATGAAT
* * *
17779216 TTTTTAGCTGAATTTTTTTGTCCATGCCAACAAAAATACAAGGATCACGTCTACCTAGTTTGGGG
1 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCAACCAAGTTTGGGG
**
17779281 CCAAAACTACTTCCGAAAAAATTTTAAAAAATCTC-GAACCGCAAAAAGTTTTGAAAATCGTGAA
66 CCAAAACTACTTCCGAAAAAATTTTAAAAAATCTCTGAACCGCAAAAAGTTTCAAAAATCGTGAA
17779345 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAAT
131 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAAT
* * * *
17779410 TTACAAGCCAGAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCGC
196 TTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * *
17779475 CATATTGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG--C-CCGCC
261 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCCTCCGCC
* *
17779537 CGCTCGTTTCGTTGGTTGGCTTAGGCATACGAAGTTCATTCCTAGTCTAAGAT-CAGACCAGACT
326 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCCAG-CCAGACT
* * * * * **
17779601 AAGGGTTACGGCAGCAAGATCGACAGCACATAGAGGGGGACCCGATCGATCCCCGACTTGCGCAT
390 GAGGGTTGCGGCAGCAGGATCGACAGCACACAGAGGGGAACCCGGCCGATCCCCGACTTGCGCAT
* * * ** *
17779666 CCTGCCCCTCTGGCTGGTTGAGCGCCCGCACGCTTATTTCGTTTGTTGACTTAGGCATACAGAGT
455 CCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGT
*
17779731 TCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTAT
520 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG-AT-CG-A----A---CC-G---
* * *
17779796 AAGATCAATCCGAATCGAGGGTTGCGGCAGCACATACTAGGCTCGGGCATGTGCTGGTGCTGCAT
571 --G----A--C----CGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCTGCAT
* * **
17779861 TTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGGTGGCATTGGCGTTCCG--G-T-GAC
624 TTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGG
* * * * *
17779922 CGG-GGGGGGTGTGTGCACATAATGTGTGATGGGTGCTGGTACATGGCCCTTATATTGGCCCCCT
689 GGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* *
17779986 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGTGATTTTACAGGTTTGCT
754 ATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* *
17780051 ACCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTTACAAAATCTTGTACA
819 ACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
17780116 CTTTGAG
884 CTTTGAG
* * * * * *
17780123 TTTTTAGCTGAATTTTTTTTTGCATGCCAACAATAATACAAGGATCCCATCTACCAAGTTTGGGA
1 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCAACCAAGTTTGGGG
* * * **
17780188 CCAAAACTCCTTTCGAAAAAATTTTAAAAAATC-CTGAACAGCAAAAAGTTTTGAAAATCGTGAA
66 CCAAAACTACTTCCGAAAAAATTTTAAAAAATCTCTGAACCGCAAAAAGTTTCAAAAATCGTGAA
* *
17780252 AAATAGAAAACGAGTCGTCTTACCATGAAACTTCACGTGAAGGCTTGAGGGACCATTGTTTGAAT
131 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAAT
* *
17780317 TTACAAGCCATAAAAATGGAATTGGGACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
196 TTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * * * * *
17780382 CCTATTGATCCACGGCTTGTGCATCCCGTCTCTCTAGCCGATGTTGTGCCCACCCGCTCGC-CTG
261 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG-TC-CTCCG
* * * * * *
17780446 CCCGTTCGTTTCGTCAGTTGGCTTAGGCATA-TAGATTTCATTCCCAGTCTAAGATCGCA-TCGG
324 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGA-AGTTCATTCCCAGTCTAAGATC-CAGCCAG
* * * * *
17780509 ACCGAGGGTTGCAGCAGCAGGATCGATAGCACACAGA-GGGAGACCCGGCTGATCCCC-AGCTTA
387 ACTGAGGGTTGCGGCAGCAGGATCGACAGCACACAGAGGGGA-ACCCGGCCGATCCCCGA-CTTG
* * * * * * *
17780572 TGCATCCCGCCCCTCTAGCCGGCTGAGTGCCCGCACGCTTGTTTTGTGGGTTGCCTTAGGGATAC
450 CGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATAC
* * * * * * *
17780637 AGATTTAATTCCCAGTGTAAGCATATGGAGTTCATTCCCAGTCTAAGATC-AGACTGGATCGAGG
515 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGGACCGAGG
** * * ** ** * * *** *
17780701 GTTGCGATAGCAAATGCTGGGCAGTCTAAG-ATCAGACCAG-ACCG-A---GGGTT-G-CGGTAG
579 GTTGCGGCAGCACATGCTGGGC--TC-GAGCATGTG-CTGGTGCTGCATTTTTCTTCGTCGG-GG
* * * * * * *
17780758 CACCATCGTTGGAGAACCTGACCCGCGACACTCGGGCTCC-ACGCGATCGGGGGTGCCAGGGGGT
639 CACCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGA--CGATCGGGGG-G-CGGGGGGT
* * *
17780822 GTGCGCACATGATGTGCGATGGTTGCTGGTACTTGGCCCTTATATTGGTCCTCTATCCCTCATCA
700 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
** * * *
17780887 AACCTCAAGAACTCACACCCCCTTAAAGAGCATTTCAAATTTTACAGGTTTGCTGCCAGTAGCCA
765 AACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCA
*
17780952 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATGTTGTACA-TTGTGAG
830 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT-TGAG
*
17781013 TTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCAACCAAGTTTGGGG
1 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCAACCAAGTTTGGGG
* * * ** *
17781078 CCAAAACTCCTTCCAAAAAAATTTTAAAAAAGCTC-GAACCTTAAAAAGTTTCAAAAATCGTGGA
66 CCAAAACTACTTCCGAAAAAATTTTAAAAAATCTCTGAACCGCAAAAAGTTTCAAAAATCGTGAA
* * *
17781142 AAATAGAAAACAAGTCGTCTTGCCATCAAACTTCACGTAAAGGCTTAAGGGACCATTGTTTGAAT
131 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAAT
* * * * *
17781207 TTAGAAGCCATAAAAATGGCATTGGAACGTAAAAATATGATGATGTGCCTAAACCCACCTACCAC
196 TTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
*
17781272 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGAAGTGCCCGCCCGCCCGTCCAC
261 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT----GCCCGCCCGT----
* *
17781337 CCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATGCGAAGTTCATTCCAAGTCTAAGATCCA
318 CC-TCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCCA
** *
17781402 GCC-GAACTGAGGGTTGCGGCAGCAGGATC-AGCAGCATGCAGAGGGGAACCCGGTCGATCCCCG
382 GCCAG-ACTGAGGGTTGCGGCAGCAGGATCGA-CAGCACACAGAGGGGAACCCGGCCGATCCCCG
* * * * **
17781465 ACTTGCGCATCCTGCCCCTCTGGCCGG-TAGAGTGCCCACACACTCGTTTCGTGACTTGACTTAG
445 ACTTGCGCATCCTGCCCCTCTGGCCGGCT-GAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAG
* * * * *
17781529 GCATACGGAGTTCATTCCCAATCTAAGTATACGGAGTTCATTCTCAGTCTAATATCGAACCAGAC
509 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGAC
* * * * * *
17781594 CGAGGGTTACGACAGCACATGCTGGGCTCGAGCATGTGCTGCTGATGCATTTCTCTTCGCCGGGG
574 CGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGG
* *
17781659 CACCATCGCCGGAGAACCTGATCGGCGGCATTGGGGTTCCGACGATCAGGGGGGCCGGGGGGTGT
639 CACCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGG-CGGGGGGTGT
* *
17781724 ACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATACTGGCCCCCTATCCCTCATCAAA
702 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
*
17781789 CCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCATT
767 CCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATT
* * * *
17781854 AAAGTTTCTGAAATGGGGACACTTTTTTTAAGTGGCCACAAAATCTTGTACACTTTGAG
832 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAG
* * * *
17781913 TTTTTAGCTGAATTTTTTTGTCCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGG
1 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCAACCAAGTTTGGGG
* * * *
17781978 CCAAAACTACTTCCGAAAAAATTTTAAAAAGTC-CTGAACCGTAAAAAGCTTCAAAAATCATGAA
66 CCAAAACTACTTCCGAAAAAATTTTAAAAAATCTCTGAACCGCAAAAAGTTTCAAAAATCGTGAA
* * * *
17782042 AAATAGAAAACGAGTCATCTTGCCATGAAACATCACGTGAAGGCTTAAGGGAACATTGTATGAAT
131 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAAT
** * ** *
17782107 TTACAAGCTGTCAAAATGGCATTGGCACATAGAAATATGAAGATGTG-ATGAAACCCACCTACCA
196 TTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCT-AAACCCACCTACCA
* * * *
17782171 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAACATAGCGCCTGCCCG--C-CCGC
260 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCCTCCGC
* * * * *
17782233 CCACTCGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-CAGATCAGAC
325 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCCAG-CCAGAC
* * * *
17782297 TGAGGGTTGTGGCAGCAGGATC-AGTAGCACACAGATGGGG-ACCCGACCGATCCCCGGCTTGCG
389 TGAGGGTTGCGGCAGCAGGATCGA-CAGCACACAGA-GGGGAACCCGGCCGATCCCCGACTTGCG
* *
17782360 CATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACATAGGCATACGA
452 CATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGG
* * * * *
17782425 AGTTCATTCCTAGTCTAAGCATACGGTGTTCATTCCCATTATAAGATCG-ACTGGATCC-AGGGT
517 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGA-CCGAGGGT
*
17782488 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATT
581 TGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCA-T
* * ** *
17782553 GCTGGAGCATCGTTGCAGAACCTGACCGGTGGCATTGGCGTTCCGGTGATC-----G-AGGGGGT
645 -C----G--TCG--G-AGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCGGGGGGT
*
17782612 GTGCGCACAAGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
700 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
*
17782677 AACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
765 AACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCA
17782742 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAG
830 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAG
* * * *
17782803 CTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCCCATCTAA-CAAGTTTGGG
1 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC-AACCAAGTTTGGG
* * *
17782867 GCCAAAACTACTTTCGAAAAAATTTTAAAAAATC-CTGAACCGTAAAAAGTTTCGAAAATCGTGA
65 GCCAAAACTACTTCCGAAAAAATTTTAAAAAATCTCTGAACCGCAAAAAGTTTCAAAAATCGTGA
* * *
17782931 AAAATAGAAAGCGAGTTGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTTTGAA
130 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAA
* *
17782996 TTTACAAGCCATAAAAATGGCATT-GCATGCAGAATTATGAAGATGTGCCTAAACCCACCTACCA
195 TTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
*
17783060 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGT-CTGCCC
260 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCCT--CC
* * * * * * *
17783124 GCCCACTCATTTCATCGGTTGGCCTCGGCATACGGAGTTCATTCCCAGTATAAGATCACA-CCAG
323 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATC-CAGCCAG
* * * * * * *
17783188 ACCGAGGGTTGCAGCAGCAGGATCGACAGCACATAGAGGGGGACTCGGCCGATCCCTGGCTTGCG
387 ACTGAGGGTTGCGGCAGCAGGATCGACAGCACACAGAGGGGAACCCGGCCGATCCCCGACTTGCG
* ** ** *
17783253 CATCCCGCCCCTCT-GCCGGCTGAGCGCCCGCACGCTCATTTTTTGGGTTGACTTAGGCACACGG
452 CATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGG
* * *
17783317 AGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTT
517 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTT
* * * *
17783382 GCGGCAGCACATGCTGGGCTCG-GGATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGTACCATTG
582 GCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCG
* * * *
17783446 TTGGAGAACCTAACCGGCGGC-TCTGGGGTTCCGGCTATCGGGGGTGTCGGGGGGGGTGTGCGCA
647 TCGGAGAACCTGACCGGCGGCAT-TGGGGTTCCGACGATCGGGGG-G-C--GGGGGGTGTGCGCA
* ** *
17783510 CATGATGTACGATGGGTGCTGGTACTTGGTGCTTAAATTGGCCCCCTATCCCTCATCAAACCTTG
707 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTG
* * * *
17783575 AGAACTCACACCCCTTTAAAGAGCATTTCAAATTTTACAGGTTTACTACCAGTAGCCATTAAAGT
772 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGT
**
17783640 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACCGTGAG
837 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAG
* *
17783694 CTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCAACCAAGTTTGGGG
1 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCAACCAAGTTTGGGG
* * * * *
17783759 CCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTC-AAACCGCAAAAAGTTTCAAAAATCATGGA
66 CCAAAACTACTTCCGAAAAAATTTTAAAAAATCTCTGAACCGCAAAAAGTTTCAAAAATCGTGAA
* * *
17783823 AAATAGAAAACGAGTCGTCTTGCCCTGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAAT
131 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAAT
* * * * * *
17783888 TTAGAAGCCATAAAAATGGCATTGGCATGTAGAAATATGATGAGGTGCCTAAACGCACCTACCAC
196 TTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * * *
17783953 CCTATTGATCCACGGCTTACGTATCCCGTCTCTCTGGCCGACGTAGTGCCCGCTCGCCCGTCCGC
261 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCC-TCCGC
* * * * * **
17784018 CCGCTTGTTTGGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTTTAAGATCGAATCAGACT
325 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCCAGCCAGACT
*
17784083 AAGGGTTGCG
390 GAGGGTTGCG
17784093 ATAGTAGTAT
Statistics
Matches: 3432, Mismatches: 436, Indels: 219
0.84 0.11 0.05
Matches are distributed among these distances:
880 1 0.00
881 31 0.01
882 35 0.01
883 2 0.00
884 2 0.00
885 23 0.01
886 3 0.00
887 78 0.02
888 209 0.06
889 94 0.03
890 839 0.24
891 383 0.11
892 281 0.08
893 155 0.05
894 10 0.00
895 8 0.00
896 15 0.00
897 8 0.00
898 248 0.07
899 9 0.00
900 459 0.13
901 42 0.01
902 4 0.00
904 1 0.00
906 1 0.00
907 289 0.08
909 1 0.00
910 7 0.00
911 192 0.06
913 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (890 bp):
TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCAACCAAGTTTGGGG
CCAAAACTACTTCCGAAAAAATTTTAAAAAATCTCTGAACCGCAAAAAGTTTCAAAAATCGTGAA
AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAAT
TTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCCTCCGCC
CGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCCAGCCAGACTG
AGGGTTGCGGCAGCAGGATCGACAGCACACAGAGGGGAACCCGGCCGATCCCCGACTTGCGCATC
CTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTT
CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGG
CAGCACATGCTGGGCTCGAGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGG
AGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAG
Found at i:17782469 original size:26 final size:26
Alignment explanation
Indices: 17782417--17782469 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
17782407 GTTGACATAG
* *
17782417 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTATAA
** *
17782443 GCATACGGTGTTCATTCCCATTATAA
1 GCATACGAAGTTCATTCCCAGTATAA
17782469 G
1 G
17782470 ATCGACTGGA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTATAA
Found at i:17785042 original size:20 final size:20
Alignment explanation
Indices: 17785017--17785063 Score: 94
Period size: 20 Copynumber: 2.4 Consensus size: 20
17785007 CCAAAGCCTC
17785017 GATGCTATGAGAGGGCAAGG
1 GATGCTATGAGAGGGCAAGG
17785037 GATGCTATGAGAGGGCAAGG
1 GATGCTATGAGAGGGCAAGG
17785057 GATGCTA
1 GATGCTA
17785064 AGGAACTTGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.30, C:0.11, G:0.43, T:0.17
Consensus pattern (20 bp):
GATGCTATGAGAGGGCAAGG
Found at i:17789915 original size:26 final size:26
Alignment explanation
Indices: 17789876--17789931 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
17789866 TGGGTTGACT
**
17789876 TAAGCATATGGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
17789902 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
17789928 TAAG
1 TAAG
17789932 ATCAGACTGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAGTC
Found at i:17790813 original size:26 final size:26
Alignment explanation
Indices: 17790774--17790829 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
17790764 TGGGTTGACT
*
17790774 TAAGCATGCAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
*
17790800 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
17790826 TAAG
1 TAAG
17790830 ATTAGATCGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAGTC
Found at i:17791693 original size:26 final size:26
Alignment explanation
Indices: 17791664--17791715 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
17791654 TGGGTCGACT
* * *
17791664 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACAGAGATCATTCCAAGTC
17791690 TAAGCATACAGAGATCATTCCAAGTC
1 TAAGCATACAGAGATCATTCCAAGTC
17791716 AAAGATCGGA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (26 bp):
TAAGCATACAGAGATCATTCCAAGTC
Found at i:17792578 original size:26 final size:26
Alignment explanation
Indices: 17792539--17792620 Score: 128
Period size: 26 Copynumber: 3.2 Consensus size: 26
17792529 CGGGTTAACT
* *
17792539 TAAGCATGCAGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
17792565 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
* *
17792591 TACGCATACGGAGTTCATTCCAAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
17792617 TAAG
1 TAAG
17792621 ATCAGACCAG
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:17793490 original size:26 final size:26
Alignment explanation
Indices: 17793447--17793502 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
17793437 AGGGTCGACT
* *
17793447 TAAGCATACGGAGTTCATTCCCAA-TC
1 TAAGCATACAGAGATCATT-CCAAGTC
17793473 TAAGCATACAGAGATCATTCCAAGTC
1 TAAGCATACAGAGATCATTCCAAGTC
17793499 TAAG
1 TAAG
17793503 ATCAGACTGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
25 4 0.15
26 23 0.85
ACGTcount: A:0.36, C:0.23, G:0.16, T:0.25
Consensus pattern (26 bp):
TAAGCATACAGAGATCATTCCAAGTC
Found at i:17794054 original size:881 final size:883
Alignment explanation
Indices: 17789815--17801402 Score: 10418
Period size: 895 Copynumber: 12.9 Consensus size: 883
17789805 GTGACACCCG
* * * *
17789815 GCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCTGCACACTCGTTTCGTGGGTTGACTTAAG
1 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAAG
* *
17789880 CATATGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACC
66 CATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCAAGTCTAAGATCAGACTGGACC
* * * *
17789945 GAGGGTTGTGACAGCACATGCTGGGCTCGTGCATGTGCTGGTGCTGCATTTTTCTTCG-TCGGGG
131 GAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCT-GGGG
* ** * *
17790009 CACCATCACCGGAGCATTGCCGGAGATTCTGACCGACGGCATTAGGGTTCCGGTGATCGGGGGGG
195 CACCAT---C---GC----CAGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGG
* *
17790074 CCGGGGGGTGTGCGCACATGATGTGCGATGGCTGCTAGTACTTGGCCCTTATATTGGCCCCCTAT
250 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * *
17790139 CCCTCATCAACCCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTTC
315 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * *
17790204 CAGTAGCAATTAAAGTTTCTGAAATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACAGT
380 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
** * *
17790268 TCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTT
445 TTGAGTTTTTAGCTGAATTTTTTT-TGCA-GCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * * **
17790333 T-GGGCAAAAACTCCTTTCC-AAAAAATTTTAAAAAATCTTC-AACCGTAAAAATTTTTGAAAAT
508 TGGGGCCAAAACTCC-TTCCGAAAAAATTTTAAAAAATC-CCAAACCGTAAAAAGTTTCAAAAAT
*
17790395 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACTTGAAGGCTTAAGGGACCATTGT
571 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* * ** *
17790460 ATGAATTTACAAGCCAT-AAAATGGCATTGGCACGTAGAAATATGAAGAGGTACCTAAACCTACC
636 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATTTACCTAAACCCACC
* * * *
17790524 TACCACCTTATCGATCCACGGCGTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCTCGCCCGCTC
701 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA--G-T-GCCCG-T-
* * * * * *
17790589 GCCCGCCCGCTCGTTTCGTCGGTTGTCTTGGGTATAAGGAGTTCATT-CCAGTCTAAGATTGGAT
760 --CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* ** * * * **
17790653 CAGACTGAGGGTTGCAACAGCAGGATTGACAACACGCAGAGGGCAACCCGGTCGATCCCC-
823 CAGACCGAGGGTTGCGGCAGCAGGATTGGCAGCACGTAGAGGGGGACCCGGTCGATCCCCA
* * * * * * * * *
17790713 GACTTGTGCATCTCACCCCTCTGG-TGGCTGAACGCCGGCACGCTTGTTTTGTGGGTTGACTTAA
1 G-CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAA
* * * * *
17790777 GCATGCAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTAGA-TCGGA
65 GCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCAAGTCTAAGATCAGACT-GGA
* * * * * * * * *
17790841 CCGAAGGTTGTGGCAACACAGGTTGGGCTCGGGCATGTGCTGGTGTCG-ATTTTTTCTTCACTGC
129 CCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCA-TTTTTCTTCGCTGG
* * *** * *
17790905 GGCACCATCGTTGGAGCATCACAGGAGAACCTAACCGACGGTATTGGGGTTCCAATGATCAGAGG
193 GGCACCATC------G---C-CAGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGG
**
17790970 GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTTTTGGTACTTGGCCCTTATATTGGCCCCCT
248 GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* ** * *
17791035 ATCCCTCATCAAACTTCGAGAACTCACACCCTTTTAAAGAGCATTTAAGATTTTACAAGTTTGCT
313 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * * *
17791100 GCTAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTGTCAAATGGTCACAAAATCTTATACA
378 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* *
17791165 CTTCGAGTTTTTAGCTG-A----------AGCCAACAAAAATACAAGGATCATGTCTACCAAGTT
443 CTTTGAGTTTTTAGCTGAATTTTTTTTGCAGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* *
17791219 TGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCA
508 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCG
* * * * *
17791284 TGAAAAATAAAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCGTCAGGGACCATTGTAT
573 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * * * *
17791349 GAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCTACCTA
638 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATTTACCTAAACCCACCTA
17791414 CCACCCGT-TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTCCCCGCCCGCCCG
703 CCACCC-TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT--------GCCCG
* * * *
17791478 TCCACCCGTTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACC
759 TCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * * * *
17791543 AGACTGAGGGTTACGGTAGCAGGATCGGTAGCACGTAGAGGGGGACCCGGTCGATCCCCA
824 AGACCGAGGGTTGCGGCAGCAGGATTGGCAGCACGTAGAGGGGGACCCGGTCGATCCCCA
* * * * ** *
17791603 GATTACGCATCCCGCCCTTCTGGCCGGCTGAGCACCCGCATGCTAATTTCGTGGGTCGACTTAAG
1 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAAG
* * * *
17791668 CATACGGAGTTCATTCCCAGTCTAAGCATACAGAGATCATTCCAAGTCAAAGATCGGACTGGAAC
66 CATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCAAGTCTAAGATCAGACTGGACC
* *
17791733 GAGGGTTGCGGTAGCACATGCTGGGCTCGAGAATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGC
131 GAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGC
* * * **
17791798 ACCATCGCC-GAATAATCTGATTGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGT
196 ACCATCGCCAGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGT
* *
17791862 GCGCACATGATGTGCG-TGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCCTATCCCCCATCAAA
261 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* * *
17791926 CCTCAAGAACTCATACCCCCTTAAAGAGCATTCGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
326 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* *
17791991 AAAGTGTCTGAAAT-TGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTTGAGTTTTTA
391 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTA
* ** *
17792055 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCCCGTCTACCAAGTTT-GAACTAAAA
456 GCTGAATTTTTTT-TGCA-GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
*
17792119 CTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGA
519 CTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGA
* *
17792184 AAACGAGTCGTCATGCCATGAAACTTCACGTGAAGGCTTAATGGACCATTGTATGAATTTGA-AA
584 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT-ACAA
* * * * *
17792248 GCCATAAAAATGGCATTGGCGTGCAAAAATATGAAGA-TGAGCCTAAACCCATCTACCACACTAT
648 GCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATTTA-CCTAAACCCACCTACCACCCTAT
*
17792312 CGATCCACGGCTTTCGCATCCCGTCTCTCTGGCCGACGTAGTG--C--CCG-CCGCTCGTTTCGT
712 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGTCCGCCCGCTCGTTTCGT
* * * ** * *
17792372 CGGTTGGGTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGACCAAAAAGAGAGTTGTGGCA
777 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCA
* * **
17792437 GCAGGATTGGCAGCACGTAG-GGGGCACCCGGCCGATCCCTG
842 GCAGGATTGGCAGCACGTAGAGGGGGACCCGGTCGATCCCCA
* *
17792478 GCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGCGGGTTAACTTAAG
1 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCG--T------TT--C----G
* * *
17792543 CATGCAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTACGCATACGGAGTTCA
52 --TG--G-GTTGA----C--T-TAAGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCA
** * * * *
17792608 TTCCAAGTCTAAGATCAGACCAGACCAAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTACT
105 TTCCAAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCT
* * * * **
17792673 GATGTCGTATTTTTCTTC-ATCGGGGCACCATTGTCGGAGCATCGTAGGAGAACCTGACCGGTGG
170 GGTGCCGCATTTTTCTTCGCT-GGGGCACCA---TC---GC--C--AGGAGAACCTGACCGACGG
* * * *
17792737 TATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTACGCACATGATTTGCGATGGGTGCTGGT
224 CATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
17792802 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
289 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* *
17792867 CATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAAATGGGGACACTTTTTT
354 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* *
17792932 CAAATGGTCACAAAATCTTGTACACTTTGAGTGTTTAGCTG-A----------AGCCACCAAAAA
419 CAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTTGCAGCCAACAAAAA
* *
17792986 TACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTT-CTAAAAAAGTTTTAAAAAATCCC
484 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA-TTTTAAAAAATCCC
* * * * *
17793050 GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACCAGTCGTCTTGCCGTGAAACTTTAC
548 AAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* *
17793115 GTGAAGCCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
613 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
* * * *
17793180 ATGAAGATTTACCTAAACCCGCCTATCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTC
678 ATGAAGATTTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * * *
17793245 GCCGACGTAATGCCCGTCCGTCCGCTCATTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCC
743 GCCGACGTAGTGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * * * *
17793310 AGTCTAAGATTGGACCAGACCGAGGGTTACGGTAGCAGGATCGGTAGCACGTAGAGGGGGACCCG
808 AGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATTGGCAGCACGTAGAGGGGGACCCG
17793375 GTCGATCCCCA
873 GTCGATCCCCA
* * * * ** * *
17793386 GATTACGCATCCCGCCCTTCTGGCCGACTGAGCACCCGCACGCTAATTTCGAGGGTCGACTTAAG
1 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAAG
* * *
17793451 CATACGGAGTTCATTCCCAATCTAAGCATACAGAGATCATTCCAAGTCTAAGATCAGACTGGAAC
66 CATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCAAGTCTAAGATCAGACTGGACC
* * *
17793516 GAGGGTTGCGGTAGCACATGCTGGGCTCGAGAATGTGCTGGTGCCGCATTTTTCTTTGCTGGGGC
131 GAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGC
* * *
17793581 ACCATCGCC-GGATAATCTGATCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGT
196 ACCATCGCCAGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGT
*
17793645 GCGCACATGATGTGCG-TGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAA
261 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
*
17793709 GCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
326 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* *
17793774 AAAGTGTCTGAAAT-TGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTTGAGTTTTTA
391 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTA
* **
17793838 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCCCGTCTACCAAGTTT-GAACCAAAA
456 GCTGAATTTTTTT-TGCA-GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * *
17793902 CTCCTTCCGAAAAAATTTTAAAAAATCCCAAATCGCAAAAAGTTTCAAAAATCATGAAAAATAGA
519 CTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGA
* * *
17793967 AAACGAGTCGTCATGCCATGAAACTTCACGTGAAGGCTTAATGGACCATTGTATGAATTTAAAAG
584 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* * *
17794032 CCATAAAAATGGCATTGGCATGCAGAAATATGAAGA-TGAGCCTAAACCCATCTACCACACTATC
649 CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATTTA-CCTAAACCCACCTACCACCCTATC
* * *
17794096 GATCCACGGCTTTCGCATTCCGTCTCTCTGGCCAACGTAGTG--C--CCGCCCGCTCGTTTCGTC
713 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGTCCGCCCGCTCGTTTCGTC
* * ** *
17794157 GGTTGGGTTAGGCATACGGAGTTCATTCCCACTCTAAGATCGGACC-GAAAAGAGAGTTGCGGCA
778 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTGCGGCA
* * * *
17794221 GTAGGATTGGCAGCACGTAG-GGGGCACCCGGCCGATCCCCG
842 GCAGGATTGGCAGCACGTAGAGGGGGACCCGGTCGATCCCCA
* * * * * * *
17794262 GCTTACGCATCCCGTCCCTCTGGTCGGCTGAGCGCCCGAACGCTCGTTTCGCGGGTTAACTTAAG
1 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAAG
* * **
17794327 CATGCGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATCAGACCAGACC
66 CATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCAAGTCTAAGATCAGACTGGACC
* * * * *
17794392 GAGGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGTATTTTTCTTCACCGGGG
131 GA-GGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGG
* * *
17794457 CACCATTGTCGGAGCATCGCAGGAGAACCTGACCGGCGGTATTGGGGTTCCGACGATC-GGGGGG
195 CACCA---TC---G---C-CAGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGG
*
17794521 CCGGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
250 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
*
17794586 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGC
315 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
*
17794651 CAGTAGCCATTAAAGTGTCTCAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
380 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* *
17794716 TCGAGTTTTTAGCT-AA----------AGCCAACAAAAATACAAGGATCACATCTACCAAGTTTG
445 TTGAGTTTTTAGCTGAATTTTTTTTGCAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * *
17794770 GGGCCAAAACTCCTTCCGAAAAAGTTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTG
510 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTG
* * * *
17794835 AAAAATAAAAAACCAGTCGTCTTGCCGTGAAACTTCACGTGAAGCCTTAAGGGACCATTGTATGA
575 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * * *
17794900 ATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATTTACCTAAACCCGCCTATC
640 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATTTACCTAAACCCACCTACC
** *
17794965 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTTACCGACGTAATGCCCGTCCGCCCGCTC
705 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGTCCGCCCGCTC
* * * * *
17795030 ATTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAAGGT
770 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGT
* * * * * *
17795095 TGTGGCAGCAGGATTGGCAGCACGTAAAGGGGGACCC-GACCATCCTCG
835 TGCGGCAGCAGGATTGGCAGCACGTAGAGGGGGACCCGGTCGATCCCCA
* * * * *
17795143 GCTTGTGCATCTCGCCCCTCTGGCCGGTTGAGCACCCACACGCTCGTTTCGTGGGTTGACTTAGG
1 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAAG
*
17795208 TATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTTCC-AGTCTAAGCATGCAGAGTTC
66 CATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCA-TTCCAAGTCTAAG-AT-CAGA---C
* * * *
17795272 ATTCCCAGTCTAAGATCAGATAGGAACGAGGGTTACGGCACCACATGTTGGGCTCGAGCTTGTGC
125 --T----G-----GA-C---------CGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGC
* * * **
17795337 TGGTGCCACATTTTTCTTCG-TCGGAGCATCAT---C-GGAGAACCTGACCGGTGGCATTGGGGT
169 TGGTGCCGCATTTTTCTTCGCT-GGGGCACCATCGCCAGGAGAACCTGACCGACGGCATTGGGGT
* * *
17795397 ACCGGTGAAT-GGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
233 TCCGGCG-ATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
*
17795461 CTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
297 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
*
17795526 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGGGACACTTTTTTCAAATGGT
362 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
*
17795591 CACAAAATCTTGTACACTTTGGGTTTTTAGCTGAATTTTTTTATGCACGCCAACAAAAATACAAG
427 CACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT-TGCA-GCCAACAAAAATACAAG
* * * *
17795656 GATCACATCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAAATACCGAACCG
490 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT-AAAAAATCCCAAACCG
*
17795721 TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAG
554 TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
*
17795786 GCTTAAGGGACCATCGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
619 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
** * *
17795851 ACGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGAC
684 ATTTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
*
17795916 GTAGTGCTCGCCCGCCCGCCCGCCTGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
749 GTA--G-T-GCCCGTCCG--C-CC-G----CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * * * * * *
17795981 ATTCCTAGTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGCAGGATCGACAGCACGCAGAGGGG
802 ATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATTGGCAGCACGTAGAGGGG
*
17796046 GACTCGGTCGATCCCCA
867 GACCCGGTCGATCCCCA
* * * * *
17796063 GCTTGCGCATCCCGCCCCTCTAGTCGGCTGAGCACCCGAACGCTTGTTTCGTGGGTTGACTTATG
1 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAAG
* ** * * * *
17796128 CATATGGAGTTCA-TCCCAGTCTAAGCATATGGAGTCCATTCCTAGTCTAAGATCAAACCGGACC
66 CATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCAAGTCTAAGATCAGACTGGACC
* * * * * * * *
17796192 -AGGGTTGTGGCAGCAGGAT-C--GACAAC-ACGCA-GAG--GGAGACCCGGCCA---ATCTGCA
131 GAGGGTTGCGGCAGCA-CATGCTGGGC-TCGA-GCATGTGCTGGTG--CC-G-CATTTTTCTTC-
* * * * * * * ** * * * * ** * **
17796246 GGTTGCGCATCCCACCCCTCTGGTG-TGCTGAGCGCCCGCA-CGCTCGTT---TC-AT-GGGTTG
188 GCTGGGGCA--CCATCGC-CAGGAGAACCTGACCGACGGCATTG-GGGTTCCGGCGATCGGGGGG
* *** ** * ** * * **** * * * *
17796304 ACTTAGGCATACG-GAGTTCATTCCCA-GT-CTAAACATACGGAGTTCATT--CCCAGTATAAGA
249 GCCGGGGGGT--GTGCGCACA-T--GATGTGCGATGGGTGCTG-GTAC-TTGGCCC--T-T-ATA
* * **** * * * **** *** *
17796364 TTGGACCGGACCGAGGGTTGCGA-CAGCACATGCTG-G-GCTCGAGCATGTGC-TGGTGCCGCAT
303 TTGG-CC--CCCTATCCCT-C-ATCA-AACCT-C-GAGAACTC-A-CACCCCCTTAAAG-AGCAT
*** * * **** * * * *** ** *
17796425 TT-TTCTTCGT-CGGGGCACCATCGTC-GGAGCATCATCGAAAGAACCTG-ACCGACGG-CA-TT
357 TTGAGATT-TTACAGGTTTGC-T-GCCAGTAGC--CAT-TAAAGTGTCTGAAATG-GGGACACTT
** ****** ******* ** * *** *
17796484 GGGGTTCCGGCAATCGGGGGGGCTGTGGGCACATGATGTGCGATGGGT-GCTAGGACTTGGCCCT
415 --TTTTCAAATGGTCACAAAATCT-TGTACAC-T--T-TGAG-TTTTTAGCT--GAATT-----T
* ** **** * * * * *** * *
17796548 TATATTG--GCCCCCTATCCCTCACAA--A-C-C-TCGA-GAACTCTCGCCCCCTTAAAGA-GCA
465 T-TTTTGCAGCCAAC-AAAAAT-ACAAGGATCACGTCTACCAAGT-TTGGGGCC--AAA-ACTCC
* * **** * * * * * * * ***
17796604 TT-TG---AGATTTTACAGGTTTGCTGCCAGTAGCCAT-TAAAGTGTCTAAAATGGGGACACTTT
523 TTCCGAAAAAATTTTA-AAAAAT-C--CCA--AACCGTAAAAAGTTTCAAAAATCGTGA-AAAAT
**** * * * *** * *
17796664 TTTCAA--A-TGGTC---ACA--AAATCTTGTACACTTTG-ATTTTTTAGCTGA--ATT-T-T--
581 AGAAAACGAGTCGTCTTGCCATGAAA-C-T-T-CAC-GTGAAGGCTTAAG-GGACCATTGTATGA
* * * * * * * * * * * **
17796714 TTTGTGCATGCCAACAAAAAT-ACA-AGGATCACGTCTACCAAGTTTGGGGCAAAAAGT-CCATC
640 ATT-TACAAGCC-ATAAAAATGGCATTGG--CATG-C-A-GAAATAT---G-AAGATTTACC-T-
*** ** * *** * * ** * ** ** ***** * ***
17796776 CAAAAAAATTTTA-AAAAATCTCGAACCGTAAAAAG-TTTCAAAAATCATG-AAAAATAGAAAAC
692 -AAACCCA-CCTACCACCCTATCGATCC----ACGGCTTGC--GCATCCCGTCTCTCTGGCCGAC
* * * ** * * ** * * * ** *
17796838 G--G-G-TCGTCTTGCCATGAAAC--TTC-ACATGAAGGCTTAGGGGACCACTGTA-TGAATTTA
749 GTAGTGCCCGTC-CGCC-CG-CTCGTTTCGTC-GGTTGGCTTA-GGCA-TAC-GGAGTTCA-TTC
* * * ** ** ** ** * * ** **
17796895 CAAGCCATAAAAAT-GG--C--A--TTGGCATGCAGAAATAAGAAGATGTGCCTA-AACCCA-CC
806 CCAGTC-T-AAGATCGGACCAGACCGAGGGTTGC-GGCAGCAG--GAT-TGGC-AGCACGTAGAG
**** *** * *
17796951 TACCACCATATCGATCCACG
864 GGGGACCCGGTCGATCCCCA
* * * * * * * * *
17796971 GCTTGTGCATCCCGTCTCTCTGACCGGCGTAATGCCCACCCGCCCGCCCG-CTCGCT-CG-T---
1 GCTTGCGCATCCCGCCCCTCTGGCCGGC-TGA-G--CACCCGCACGCTCGTTTCG-TGGGTTGAC
* ** * * * *
17797030 TT---CGT-C-G-G----TTGGC--T-TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACT
61 TTAAGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCAAGTCTAAGATCAGACT
* * * * * *
17797082 GGACCGAGGGTTGTGGCATCACATGCTGGGCTAGGGCATGTTCTGGTG-CGACATTTTTCTTCAC
126 GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCG-CATTTTTCTTCGC
* * * * *
17797146 CGAGGCACCATCGCCGAAGCATCGCCGGAGAACCTGACCGGCGACATTGGGGTTCCGGCTATCGG
190 TGGGGCACCATCG-C----CA-----GGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGG
* * *
17797211 GGGGGCCGGGGGGTGTCCGCACATTATGTGCGATGGGTGCTGGTACTTGGCCCTTACATTGGCCC
245 GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* *
17797276 GCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
310 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* *
17797341 GCTACCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
375 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * *
17797406 ACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAAATACAAGGATCACGTCAAC
440 ACACTTTGAGTTTTTAGCTGAATTTTTTT-TGCA-GCC-AACAAAAATACAAGGATCACGTCTAC
* * * * *
17797471 CAAGTTTGGGGGCAAAACTCCTTTCGAAAAAATTTAAAAAAATCTCAAACCGCAAAAAGTTTCAA
502 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAA
* * *
17797536 AAATCCTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCAGGTGAAGGCTTAAGGGACCA
567 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* * * * *
17797601 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGAACGTAGAAATATGAAGATGTACCTCAACC
632 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATTTACCTAAACC
* * * * *
17797666 CACCTACCACACTATCGATGCACGGCTTGCGCATCCCGTCTCTCCGGCGGGCGTAGTGCCCGCTC
697 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG-T-
* * *
17797731 GCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAAATGGAGTTCATTCCTAGTCTAAGATC
760 ------CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * * * * *
17797796 AGACCAGACCGAGGGTTACGGCAGCAAGATCGGCAGTAAGTAGAGGGGGACCCGGCCGATCCTCT
819 GGACCAGACCGAGGGTTGCGGCAGCAGGATTGGCAGCACGTAGAGGGGGACCCGGTCGATCCCCA
* *** * ** * * * * *
17797861 GCTTGTGCATCCCAAACCTCTGGTCAACTGAGCGCTCACACGCTCGTTTCATGGGTTGACTTAGG
1 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAAG
* ** * * * ** *
17797926 GATAATGA-TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGGTCAGACCAGATC
66 CATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCAAGTCTAAGATCAGACTGGACC
* * * * * *
17797990 GAGGGATGTGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCCCCGGGGC
131 GAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGC
* * * *
17798055 ACCATCGCTGGAGCATCGTCGGAGAACCTAACCGATGGTATTGGGGTTTCGGCGATCGGGGGGGC
196 ACCATCGC-----CA-----GGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGC
*
17798120 CGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
251 C-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * * *
17798185 CCCTCATCAAACCTCGAGAACTCACACCCCCATAAAGAGCATTTGACATTTTACAAGCTTGCTGC
315 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * *
17798250 CAGTAGCCACTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACT
380 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * * *
17798315 TCGAGTTTTTAGCTGAATTTTTTCGTT-CTTGCCAACAAAGATACAAGGATCATGTCTACCAAGT
445 TTGAGTTTTTAGCTGAATTTTTT--TTGC-AGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* ** * * *
17798379 TTGGGGCCAAAAATCCTTTTGAAAAAA-TTTAAAAAATACCGAACCGTAAAAAGTTTCAAAAATT
507 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATC
* * *
17798443 ATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTT
572 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* *
17798508 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
637 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATTTACCTAAACCCACCT
* * * * *
17798573 ACCACCCTATCGATCCATGGCTTGCGCGTCCCGTCTCTCTGGCGGACGTAATGCCCACCCGCCCG
702 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG----CCCGTCCG
* * * *
17798638 CCCGGTCGCTCGTTTTGTCGGTAGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACC
763 -CC---CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * * * * * *
17798703 AGACCAAGGGTTGCAGCAGTAGGATCGGCAGCATGCAGAGGGGGACCCAG-CTGATCCCCA
824 AGACCGAGGGTTGCGGCAGCAGGATTGGCAGCACGTAGAGGGGGACCCGGTC-GATCCCCA
* * * * * *
17798763 GGTTGCGCATCCCACCCCTCTGG-CGTTCTGACCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
1 GCTTGCGCATCCCGCCCCTCTGGCCG-GCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAA
* * * * **
17798827 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCCTTCCCAGTCTAAGATCGGACCAGAC
65 GCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCAAGTCTAAGATCAGACTGGAC
* *
17798892 CGAGGGTTGCGACAGCACATGCTGGGCTC-AGGCATGTGCTGGTGCCACATTTTTCTTCG-TCGG
130 CGAGGGTTGCGGCAGCACATGCTGGGCTCGA-GCATGTGCTGGTGCCGCATTTTTCTTCGCT-GG
* ** *
17798955 GGCACCATCGTCGGAGCATCGTCGGAGAACCTGACTGACGGCATTGGGGTTTTGGCAATC-----
193 GGCACCATCG-C----CA-----GGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGG
17799015 -G--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
248 GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* *
17799077 ATCTCTCATCAAACCTCTAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
313 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
*
17799142 GCCAGTAGCCATTAAAATGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
378 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * * * *
17799207 CTTAGGGTTTTTAGCTGAATTTTTTTATGCATACCAACAAAGATACAAGGATCACTTCTACCAAG
443 CTTTGAGTTTTTAGCTGAATTTTTTT-TGCA-GCCAACAAAAATACAAGGATCACGTCTACCAAG
* ** * * * *
17799272 TTTGGGGCCAAAACGCCTTAAGAAGAAATTTTAAAAAATACCGAACCGTAAAAAGTTTCAAAATT
506 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAAT
* * *
17799337 TGTGAAAAATAGAAAACGATTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
571 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* *
17799402 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATATGCCTAAACCCACC
636 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATTTACCTAAACCCACC
* * * * *
17799467 TACCACCCTATCGATCCCCGGCTTGCGCGTCCCGTCTCTCTAGCGGATGTAGTGCCCGCTCGCCC
701 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG-T---CC
* * * *
17799532 GCCCGGCCGCTTGTTTTGTCGGTAGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
762 G--C--CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* * *
17799597 CAGACCGAGGGTTGCAGCAGCAGGATCGGCAGCATGTAGAGGGGGACCCGG-CTGATCCCCA
823 CAGACCGAGGGTTGCGGCAGCAGGATTGGCAGCACGTAGAGGGGGACCCGGTC-GATCCCCA
* * * * *
17799658 GGTTGCGCATCCCACCCCTCTGG-CGTGCTGACCACCCGCACGCTCATTTCGTGGGTTGACTTAG
1 GCTTGCGCATCCCGCCCCTCTGGCCG-GCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAA
* * * * ** **
17799722 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCCTTCCCAGTCTAAAATTGGACCAGAC
65 GCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCAAGTCTAAGATCAGACTGGAC
* * *
17799787 CGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCG-TCGGG
130 CGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCT-GGG
** *
17799851 GCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGG-TCTAGCAATC------
194 GCACCATCG-C----CA-----GGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGG
* *
17799909 G--GGGGGGTGTGCGAACATGATGTGCGATGGGTGCTGGTACCTGGCCCTTATATTGGCCCCCTA
249 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
*
17799972 TCTCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
314 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
17800037 CCAATAGCCATTAAAATGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
379 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * *
17800102 TTGCGGGTTTTTAGCTGAACTTTTTTGTGCATGCCAACAAAGATACAAGGATCACGTCTACCAAG
444 TT-TGAGTTTTTAGCTGAA-TTTTTTTTGCA-GCCAACAAAAATACAAGGATCACGTCTACCAAG
* * * * * *
17800167 TTTGGGGCCAAAAATTCTTTCGAAAAAATTTTAAAAAATACCGAACCGTAAAAAGTTTCAAAATT
506 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAAT
* * *
17800232 TGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGT
571 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* *
17800297 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
636 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATTTACCTAAACCCACC
* * *
17800362 TACCACCCTATCGATCCACGGCTTGCGCGTCCCGTCTCTCTGACGGACGTAGTGCCCTCCCGCCC
701 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA--G---T---GCCC
* * * * * *
17800427 GGCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATATGGAGTTCATTCCTAGTCTAAGATTGGAC
758 GTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* * * * * * *
17800492 AAGACCAAGGGTTGCGGCAGCAAGATTGGCAGCACGCAGACGGGGACCCGGTTGATCCCCG
823 CAGACCGAGGGTTGCGGCAGCAGGATTGGCAGCACGTAGAGGGGGACCCGGTCGATCCCCA
* * * * * *
17800553 GCTTGCGCATCCCGCCCCTTTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGG
1 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAAG
* * * * *
17800618 CATACGGAGTTCATTCCTAGTCTAAGCATACGGATTTCATTCCCATTCTAAGATCAGACTGGACC
66 CATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCAAGTCTAAGATCAGACTGGACC
* * * *
17800683 GAGGGTTGCGGCAGCACATGCTGGGCTAGGGCATGTTCTGGTGCCGCATTATTCTTCG-TCGGGG
131 GAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCT-GGGG
*
17800747 CACCATCGCCAGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCTGGCGATCGGGGGGG
195 CACCATCG-C----CA-----GGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGG
* *
17800812 CCAGTGGGGTGTGCGCATATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
250 CC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
*
17800877 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTTCA-GTTTGCTG
314 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
17800941 CCAGTAGCCATTAAAGTG-CTGAAAT-GGGACACTTTTTAACAAATGGTCACAAAATCTTGTACA
379 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT-TCAAATGGTCACAAAATCTTGTACA
* * *
17801004 CTTCGAG-TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTGCCAAG
443 CTTTGAGTTTTTAGCTGAATTTTTTT-TGCA-GCCAACAAAAATACAAGGATCACGTCTACCAAG
** * * * *
17801068 TTTGGGGGGAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAATCCGCAAAATGTTTCGAAAAT
506 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAAT
* * *
17801133 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAGGGGACCATTGT
571 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* * * *
17801198 ATGAATTTACAAGCCATACAAATGGCATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACC
636 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATTTACCTAAACCCACC
* * * *
17801263 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGTCCGGCATAGTGCCCGCCCGCCC
701 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT----GCCCGTCC
* **
17801328 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAGTCCCAGTCTAAGATCAAACCAGA
762 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA
17801393 CCGAGGGTTG
827 CCGAGGGTTG
17801403 TGGCCGCACA
Statistics
Matches: 8791, Mismatches: 1404, Indels: 991
0.79 0.13 0.09
Matches are distributed among these distances:
869 51 0.01
870 124 0.01
871 62 0.01
874 1 0.00
875 55 0.01
876 252 0.03
877 412 0.05
878 116 0.01
879 68 0.01
880 10 0.00
881 406 0.05
882 176 0.02
883 16 0.00
884 14 0.00
885 8 0.00
886 74 0.01
887 182 0.02
888 313 0.04
889 379 0.04
890 253 0.03
891 50 0.01
892 72 0.01
893 242 0.03
894 484 0.06
895 1220 0.14
896 63 0.01
897 99 0.01
898 371 0.04
899 83 0.01
900 29 0.00
901 436 0.05
902 593 0.07
903 409 0.05
904 255 0.03
905 132 0.02
906 150 0.02
907 322 0.04
908 115 0.01
909 40 0.00
910 23 0.00
911 35 0.00
912 98 0.01
913 139 0.02
914 66 0.01
915 28 0.00
916 20 0.00
917 5 0.00
918 23 0.00
919 128 0.01
920 76 0.01
921 2 0.00
922 7 0.00
923 4 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (883 bp):
GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAAG
CATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCAAGTCTAAGATCAGACTGGACC
GAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGC
ACCATCGCCAGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGT
GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTA
GCTGAATTTTTTTTGCAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
CCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
ATAAAAATGGCATTGGCATGCAGAAATATGAAGATTTACCTAAACCCACCTACCACCCTATCGAT
CCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGTCCGCCCGCTCGTTTCGTCGGT
TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAG
GATTGGCAGCACGTAGAGGGGGACCCGGTCGATCCCCA
Found at i:17794360 original size:26 final size:26
Alignment explanation
Indices: 17794323--17794378 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
17794313 CGGGTTAACT
* *
17794323 TAAGCATGCGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCAAGTC
17794349 TAAGCATACGGAGTTCATTCCAAGTC
1 TAAGCATACGGAGTTCATTCCAAGTC
17794375 TAAG
1 TAAG
17794379 ATCAGACCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCAAGTC
Found at i:17795245 original size:26 final size:26
Alignment explanation
Indices: 17795209--17795285 Score: 127
Period size: 26 Copynumber: 3.0 Consensus size: 26
17795199 TGACTTAGGT
*
17795209 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACAGAGTTCATTCCCAGTCTAAGC
*
17795235 ATACAGAGTTCATTTCCAGTCTAAGC
1 ATACAGAGTTCATTCCCAGTCTAAGC
*
17795261 ATGCAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
17795286 ATCAGATAGG
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:17796161 original size:25 final size:26
Alignment explanation
Indices: 17796127--17796178 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
17796117 GTTGACTTAT
*
17796127 GCATATGGAGTTCA-TCCCAGTCTAA
1 GCATATGGAGTCCATTCCCAGTCTAA
*
17796152 GCATATGGAGTCCATTCCTAGTCTAA
1 GCATATGGAGTCCATTCCCAGTCTAA
17796178 G
1 G
17796179 ATCAAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 13 0.54
26 11 0.46
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (26 bp):
GCATATGGAGTCCATTCCCAGTCTAA
Found at i:17796212 original size:183 final size:185
Alignment explanation
Indices: 17795968--17796384 Score: 552
Period size: 183 Copynumber: 2.3 Consensus size: 185
17795958 GTTGGCTTAG
*
17795968 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCAAGGGTTGCAGCAGCAGGATCGACA
* * * * * *
17796033 GCACGCAGAGGGGGACTCGGTCGATCCCCAGCTTGCGCATCCCGCCCCTCTAGTCG-GCTGAGCA
66 ACACGCAGAGGGAGACCCGGCCAATCCCCAGCTTGCGCATCCCACCCCTCTAGT-GTGCTGAGCA
* * * *
17796097 CCCGAACGCTTGTTTCGTGGGTTGACTTATGCATATGGAGTTCA-TCCCAGTCTAA
130 CCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * **
17796152 GCATATGGAGTCCATTCCTAGTCTAAGATCAAACCGGACC-AGGGTTGTGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCAAGGGTTGCAGCAGCAGGATCGACA
** * * *
17796216 ACACGCAGAGGGAGACCCGGCCAATCTGCAGGTTGCGCATCCCACCCCTCTGGTGTGCTGAGCGC
66 ACACGCAGAGGGAGACCCGGCCAATCCCCAGCTTGCGCATCCCACCCCTCTAGTGTGCTGAGCAC
*
17796281 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
131 CCGAACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** *
17796336 ACATACGGAGTTCATTCCCAGTATAAGATTGGACCGGACCGAGGGTTGC
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCAAGGGTTGC
17796385 GACAGCACAT
Statistics
Matches: 199, Mismatches: 31, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
182 1 0.01
183 112 0.56
184 79 0.40
185 7 0.04
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.22
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCAAGGGTTGCAGCAGCAGGATCGACA
ACACGCAGAGGGAGACCCGGCCAATCCCCAGCTTGCGCATCCCACCCCTCTAGTGTGCTGAGCAC
CCGAACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:17798863 original size:26 final size:26
Alignment explanation
Indices: 17798827--17798879 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17798817 GTTGACTTAG
17798827 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17798853 GCATACGGAGTTCCTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17798879 G
1 G
17798880 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17799758 original size:26 final size:26
Alignment explanation
Indices: 17799722--17799773 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
17799712 GTTGACTTAG
17799722 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17799748 GCATACGGAGTTCCTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17799774 AATTGGACCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17799899 original size:895 final size:894
Alignment explanation
Indices: 17789811--17796206 Score: 7006
Period size: 877 Copynumber: 7.2 Consensus size: 894
17789801 GTCTGTGACA
* * *
17789811 CCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCTGCACACTCGTTTCGTGGGTTGACT
1 CCCGG-TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
* * **
17789876 TAAGCATATGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTG
65 TAAGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* * * *
17789941 GACCGAGGGTTGTGACAGCACATGCTGGGCTCGTGCATGTGCTGGTGCTGCATTTTTCTTCGTCG
130 GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
* * * ** * *
17790006 GGGCACCATCACCGGAGCATTGCCGGAGATTCTGACCGACGGCATTAGGGTTCCGGTGATCGGGG
195 GGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATC----
* *
17790071 GGGCCGGGGGGTGTGCGCACATGATGTGCGATGGCTGCTAGTACTTGGCCCTTATATTGGCCCCC
256 -GG--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* *
17790136 TATCCCTCATCAACCCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGC
318 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * *
17790201 TTCCAGTAGCAATTAAAGTTTCTGAAATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTAC
383 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * *
17790265 AGTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCA-TGTCTACCA
448 ACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACT-TCTACCA
* * * **
17790329 AGTTT-GGGCAAAAACTCCTTTCCAAAAAATTTTAAAAAATCTTC-AACCGTAAAAATTTTTGAA
512 AGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATC--CGAACCGTAAAAAGTTTCAAA
*
17790392 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACTTGAAGGCTTAAGGGACCAT
575 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* * * * *
17790457 TGTATGAATTTACAAGCCAT-AAAATGGCATTGGCACGTAGAAATATGAAGAGGTACCTAAACCT
640 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
* * * * * *
17790521 ACCTACCACCTTATCGATCCACGGCGTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCTCGCCCG
705 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCTCG
* * * * * **
17790586 CTCGCCCGCCCGCTCGTTTCGTCGGTTGTCTTGGGTATAAGGAGTTCATT-CCAGTCTAAGATTG
770 CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * ** * * * * **
17790650 GATCAGACTGAGGGTTGCAACAGCAGGATTGACAACACGCAGAGGGCAACCCGG-TCGATC
835 GACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGGCT-GATC
* * * * * * * * *
17790710 CCCGACTTGTGCATCTCACCCCTCTGG-TGGCTGAACGCCGGCACGCTTGTTTTGTGGGTTGACT
1 CCCG-GTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
* * * * *
17790774 TAAGCATGCAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTAGATCG
65 TAAGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* * * * * * *
17790839 GACCGAAGGTTGTGGCAACACAGGTTGGGCTCGGGCATGTGCTGGTGTCG-ATTTTTTCTTC-AC
130 GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA-TTTTTCTTCGTC
* ** * * * *
17790902 TGCGGCACCATCGTTGGAGCATC-ACAGGAGAACCTAACCGACGGTATTGGGGTTCCAATGATCA
194 -GGGGCACCATCGCCGGAGCATCGTC-GGAGAACCTGACCGACGGCATTGGGGTTCC---G-GC-
** **
17790966 GAGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTTTTGGTACTTGGCCCTTATATTGGCC
252 GATCGG--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* ** * *
17791031 CCCTATCCCTCATCAAACTTCGAGAACTCACACCCTTTTAAAGAGCATTTAAGATTTTACAAGTT
315 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* * * *
17791096 TGCTGCTAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTGTCAAATGGTCACAAAATCTTA
380 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
17791161 TACACTTCGAGTTTTTAGCTG---------A---A-GCCAACAAAAATACAAGGATCA-TGTCTA
445 TACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACT-TCTA
*
17791212 CCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCA
509 CCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAAT-CCGAACCGTAAAAAGTTTCA
* * * * * *
17791277 AAAATCATGAAAAATAAAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCGTCAGGGACC
573 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* *
17791342 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAAC
638 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
* *
17791407 CTACCTACCACCCGT-TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTCCCCGC
703 CCACCTACCACCC-TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGC
* * * * *
17791471 CCGCCCGTCCACCCGTTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
767 TCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
** * * * *
17791536 TTGGACCAGACTGAGGGTTACGGTAGCAGGATCGGTAGCACGTAGAGGGGGACCCGG-TCGATC
832 TCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGGCT-GATC
* * * * * ** *
17791599 CCCAGATTACGCATCCCGCCCTTCTGGCCGGCTGAGCACCCGCATGCTAATTTCGTGGGTCGACT
1 CCC-GGTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
* * * * * **
17791664 TAAGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGATCATTCCAAGTCAAAGATCGGACTG
65 TAAGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* * * *
17791729 GAACGAGGGTTGCGGTAGCACATGCTGGGCTCGAGAATGTGCTGGTGCCGCATTTTTCTTCG-CT
130 GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-
* **
17791793 GGGGCACCATCGCC-GA--A---T-----AATCTGATTGACGGCATTGGGGTTCCGGCGATCGGG
194 GGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATC---
*
17791847 GGGGCCGGGGGGTGTGCGCACATGATGTGCG-TGGGTGCTGGTACTTGGCCCTTATGTTGGCCCC
256 --GG--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* * * *
17791911 CTATCCCCCATCAAACCTCAAGAACTCATACCCCCTTAAAGAGCATTCGAGATTTTACAGGTTTG
317 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
*
17791976 CTGCCAGTAGCCATTAAAGTGTCTGAAAT-TGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
382 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * * * *
17792040 CAGTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCCCGTCTACCA
447 CACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACTTCTACCA
** * * * *
17792105 AGTTT-GAACTAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAA
512 AGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAAT-CCGAACCGTAAAAAGTTTCAAAA
* *
17792169 ATCGTGAAAAATAGAAAACGAGTCGTCATGCCATGAAACTTCACGTGAAGGCTTAATGGACCATT
576 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* * *
17792234 GTATGAATTTGA-AAGCCATAAAAATGGCATTGGCGTGCAAAAATATGAAGATGAGCCTAAACCC
641 GTATGAATTT-ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
* * *
17792298 ATCTACCACACTATCGATCCACGGCTTTCGCATCCCGTCTCTCTGGCCGACGTA------G-T--
705 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCTCG
* * *
17792354 ---GCCCG-CCGCTCGTTTCGTCGGTTGGGTTAGGCATACGGAGTTCATTCCCAATCTAAGATCG
770 CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* ** * * * * *
17792415 GACCAAAAAGAGAGTTGTGGCAGCAGGATTGGCAGCACGTAG-GGGGCACCCGGCCGATC
835 GACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGGCTGATC
* *
17792474 CCTGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGCGGGTTAACT
1 CCCGG-TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG--T------TT--C-
* *
17792539 TAAGCATGCAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTACGCATACGGAG
54 ---G--TG--G-GTTGA----C--T-TAAGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* * *
17792604 TTCATTCCAAGTCTAAGATCAGACCAGACCAAGGGTTACGGCAGCACATGCTGGGCTCGGGCATG
104 TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* * * * * * * * *
17792669 TACTGATGTCGTATTTTTCTTCATCGGGGCACCATTGTCGGAGCATCGTAGGAGAACCTGACCGG
169 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGA
* * * * *
17792734 TGGTATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTACGCACATGATTTGCGATGGGTGCT
234 CGGCATTGGGGTTCCGGCGATC-----GG--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
17792799 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
292 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
17792864 GAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAAATGGGGACACTTT
357 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * *
17792929 TTTCAAATGGTCACAAAATCTTGTACACTTTGAGTGTTTAGCTG---------A---A-GCCACC
422 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAC
* *
17792981 AAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCC-TTCTAAAAAAGTTTTAAAAA
487 AAAAATACAAGGATCACTTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAA-TTTTAAAAA
* * *
17793045 ATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACCAGTCGTCTTGCCGTGAAAC
551 AT-CCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * *
17793110 TTTACGTGAAGCCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
615 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
* * * *
17793175 GAAATATGAAGATTTACCTAAACCCGCCTATCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
680 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * * * *
17793240 CTTTCGCCGACGTAATGCCCG-T-------CCGTCCGCTCATTTCGTCAGTTGGCTTAGGCATAC
745 CTCTGGCCGACGTAGTGCCCGCTCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
** * * *
17793297 GGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTACGGTAGCAGGATCGGTAGCACGT
810 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGT
17793362 AGAGGGGGACCCGG-TCGATC
875 AGAGGGGGACCCGGCT-GATC
* * * * * ** * *
17793382 CCCAGATTACGCATCCCGCCCTTCTGGCCGACTGAGCACCCGCACGCTAATTTCGAGGGTCGACT
1 CCC-GGTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
* * * * **
17793447 TAAGCATACGGAGTTCATTCCCAATCTAAGCATACAGAGATCATTCCAAGTCTAAGATCAGACTG
65 TAAGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* * * * *
17793512 GAACGAGGGTTGCGGTAGCACATGCTGGGCTCGAGAATGTGCTGGTGCCGCATTTTTCTTTG-CT
130 GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-
* *
17793576 GGGGCACCATCGCC-G-G-A---T-----AATCTGATCGACGGCATTGGGGTTCCGGCGATCGGG
194 GGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATC---
*
17793630 GGGGCCGGGGGGTGTGCGCACATGATGTGCG-TGGGTGCTGGTACTTGGCCCTTATGTTGGCCCC
256 --GG--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
*
17793694 CTATCCCTCATCAAAGCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
317 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
*
17793759 CTGCCAGTAGCCATTAAAGTGTCTGAAAT-TGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
382 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * * * *
17793823 CAGTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCCCGTCTACCA
447 CACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACTTCTACCA
** * * * *
17793888 AGTTT-GAACCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAATCGCAAAAAGTTTCAAAA
512 AGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAAT-CCGAACCGTAAAAAGTTTCAAAA
* * *
17793952 ATCATGAAAAATAGAAAACGAGTCGTCATGCCATGAAACTTCACGTGAAGGCTTAATGGACCATT
576 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* *
17794017 GTATGAATTTAAAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGAGCCTAAACCCA
641 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
* * * * *
17794082 TCTACCACACTATCGATCCACGGCTTTCGCATTCCGTCTCTCTGGCCAACGTA------G-T---
706 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCTCGC
* * *
17794137 --GCCCGCCCGCTCGTTTCGTCGGTTGGGTTAGGCATACGGAGTTCATTCCCACTCTAAGATCGG
771 CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
** * * * * *
17794200 ACC-GAAAAGAGAGTTGCGGCAGTAGGATTGGCAGCACGTAG-GGGGCACCCGGCCGATC
836 ACCAG-ACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGGCTGATC
* * * * * *
17794258 CCCGGCTTACGCATCCCGTCCCTCTGGTCGGCTGAGCGCCCGAACGCTCGTTTCGCGGGTTAACT
1 CCCGG-TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
* *
17794323 TAAGCATGCGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATCAGACCA
65 TAAGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* * **
17794388 GACCGAGGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGTATTTTTCTTCACC
130 GACCGA-GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* * * * *
17794453 GGGGCACCATTGTCGGAGCATCG-CAGGAGAACCTGACCGGCGGTATTGGGGTTCCGACGATCGG
194 GGGGCACCATCGCCGGAGCATCGTC-GGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATC--
*
17794517 GGGGCCGGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
256 --GG--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
*
17794582 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTG
317 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
*
17794647 CTGCCAGTAGCCATTAAAGTGTCTCAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
382 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
*
17794712 CACTTCGAGTTTTTAGCT--A-------A---A-GCCAACAAAAATACAAGGATCACATCTACCA
447 CACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACTTCTACCA
* *
17794764 AGTTTGGGGCCAAAACTCCTTCCGAAAAAGTTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAA
512 AGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATC-CGAACCGTAAAAAGTTTCAAAA
* * * *
17794829 ATCGTGAAAAATAAAAAACCAGTCGTCTTGCCGTGAAACTTCACGTGAAGCCTTAAGGGACCATT
576 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* * * * *
17794894 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATTTACCTAAACCCG
641 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
* ** *
17794959 CCTATCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTTACCGACGTAATGCCCG-T---
706 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCTCGC
* *
17795020 ----CCGCCCGCTCATTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
771 CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * * * * * *
17795081 ACCAGATCGAAGGTTGTGGCAGCAGGATTGGCAGCACGTAAAGGGGGACCCGAC-CATC
836 ACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGGCTGATC
* * * * * *
17795139 CTCGGCTTGTGCATCTCGCCCCTCTGGCCGGTTGAGCACCCACACGCTCGTTTCGTGGGTTGACT
1 CCCGG-TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
* * * *
17795204 TAGGTATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTTCCAGTCTAAGCATGCAGAG
65 TAAGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG
* * * * *
17795269 TTCATTCCCAGTCTAAGATCAGATAGGAACGAGGGTTACGGCACCACATGTTGGGCTCGAGCTTG
126 ---A----C---C--AGA-C---------CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* * *
17795334 TGCTGGTGCCACATTTTTC-T--TC---G-----T---CGGAGCATCATCGGAGAACCTGACCGG
169 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGA
* * * *
17795385 TGGCATTGGGGTACCGGTGAATGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
234 CGGCATTGGGGTTCCGGCG-AT---CGGG---GGGGGTGTGCGCACATGATGTGCGATGGGTGCT
*
17795450 GGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
292 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
*
17795515 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGGGACACTTT
357 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * *
17795580 TTTCAAATGGTCACAAAATCTTGTACACTTTGGGTTTTTAGCTGAATTTTTTTATGCACGCCAAC
422 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAC
*
17795645 AAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAA
487 AAAAATACAAGGATCACTTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTT-AAAAA
*
17795710 ATACCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAAC
551 AT-CCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
*
17795775 TTCACGTGAAGGCTTAAGGGACCATCGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
615 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
* *
17795840 GAAATATGAAGACGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCT
680 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * *
17795905 CTCTGGCCGACGTAGTGCTCGCCCGCCCGCCCGCCTGCCCACTCGTTTCGTCGGTTGGCTTAGGC
745 CTCTGGCCGACGTA--G-T-GCCCGCTCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * *
17795970 ATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGCAGGATCGACAGC
806 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGC
* *
17796035 ACGCAGAGGGGGACTCGG-TCGATC
871 ACGTAGAGGGGGACCCGGCT-GATC
* * * * * *
17796059 CCCAGCTTGCGCATCCCGCCCCTCTAGTCGGCTGAGCACCCGAACGCTTGTTTCGTGGGTTGACT
1 CCC-GGTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
* * * * * * *
17796124 TATGCATATGGAGTTCA-TCCCAGTCTAAGCATATGGAGTCCATTCCTAGTCTAAGATCAAACCG
65 TAAGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
*
17796188 GACC-AGGGTTGTGGCAGCA
130 GACCGAGGGTTGCGGCAGCA
17796207 GGATCGACAA
Statistics
Matches: 4697, Mismatches: 594, Indels: 419
0.82 0.10 0.07
Matches are distributed among these distances:
869 51 0.01
870 123 0.03
871 59 0.01
874 3 0.00
875 57 0.01
876 251 0.05
877 413 0.09
878 115 0.02
879 52 0.01
880 2 0.00
881 401 0.09
882 175 0.04
883 7 0.00
885 4 0.00
886 36 0.01
887 162 0.03
888 294 0.06
889 355 0.08
890 182 0.04
891 3 0.00
892 54 0.01
893 204 0.04
894 4 0.00
895 3 0.00
897 6 0.00
898 334 0.07
899 65 0.01
900 4 0.00
901 164 0.03
902 210 0.04
903 5 0.00
904 1 0.00
905 3 0.00
906 111 0.02
907 284 0.06
908 57 0.01
909 1 0.00
910 1 0.00
911 5 0.00
912 59 0.01
913 120 0.03
914 51 0.01
915 1 0.00
917 1 0.00
918 2 0.00
919 131 0.03
920 70 0.01
921 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (894 bp):
CCCGGTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
AAGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGG
GGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGG
GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
TTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACTTCTACCAAGTTTGGGG
CCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAA
ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCTCGCCCGCCCGCCC
GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA
GGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGGCTGATC
Found at i:17800656 original size:26 final size:26
Alignment explanation
Indices: 17800617--17800669 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17800607 GTTGGCTTAG
*
17800617 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
17800643 GCATACGGATTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17800669 G
1 G
17800670 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17804371 original size:26 final size:26
Alignment explanation
Indices: 17804341--17804393 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17804331 GTTGACTTAG
* *
17804341 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGCCTAA
17804367 GCATAAGGAGTTCATTCCCAGCCTAA
1 GCATAAGGAGTTCATTCCCAGCCTAA
17804393 G
1 G
17804394 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGCCTAA
Found at i:17804992 original size:265 final size:265
Alignment explanation
Indices: 17804510--17805043 Score: 890
Period size: 265 Copynumber: 2.0 Consensus size: 265
17804500 CGGCGATCGG
* *
17804510 TGGGGCCGAGGGGTGTGCGCACATGGTGCGCGGTGGGTGCTGGTACTTGGCCCTTATATTGGCCC
1 TGGGGCCGAGGGGTGTGCGCACATGATGCGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
17804575 CCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
66 CCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
17804640 GCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
131 GCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
17804705 ACACTTCAAAGTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAAAAGGATCACCTCTACC
196 ACACTTCAAAGTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAAAAGGATCACCTCTACC
17804770 AAGTT
261 AAGTT
* * * *
17804775 TGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGTTGGTACTTGGCCCTTATATTGGCCC
1 TGGGGCCGAGGGGTGTGCGCACATGATGCGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
*
17804840 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
66 CCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * * *
17804905 GCTGCCAGTAGCCCTTAAAGTGTCTGAAATGGGGACGCTTTTTTCAAGTGGTCACAAAATCTTGT
131 GCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * * * * * *
17804970 ACACTTC-GAGTTTTTTGCTGAATTTTTTTTTGGATGCCGACAAAAATACAAGGATCACGTCTAC
196 ACACTTCAAAG-TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAAAAGGATCACCTCTAC
17805034 CAAGTT
260 CAAGTT
17805040 TGGG
1 TGGG
17805044 TCCAAAACTC
Statistics
Matches: 250, Mismatches: 18, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
264 2 0.01
265 248 0.99
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (265 bp):
TGGGGCCGAGGGGTGTGCGCACATGATGCGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
CCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
GCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
ACACTTCAAAGTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAAAAGGATCACCTCTACC
AAGTT
Found at i:17806152 original size:26 final size:26
Alignment explanation
Indices: 17806123--17806175 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17806113 GTTGAGTTAG
*
17806123 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17806149 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17806175 G
1 G
17806176 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17807732 original size:26 final size:26
Alignment explanation
Indices: 17807703--17807756 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
17807693 TGGGTTGACT
17807703 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
17807729 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
17807755 TA
1 TA
17807757 AGATCGGATC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATTCCCAGTC
Found at i:17809539 original size:26 final size:26
Alignment explanation
Indices: 17809503--17809555 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17809493 GTTGACTTAG
*
17809503 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
17809529 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
17809555 G
1 G
17809556 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:17810444 original size:26 final size:26
Alignment explanation
Indices: 17810408--17810458 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
17810398 TGACTTAGGT
* * *
17810408 ATACGGAGTTCATTTCTAGTCTAAGC
1 ATACGAAGTTCATTCCCAGTCTAAGC
17810434 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
17810459 ATCAGATTGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGC
Found at i:17812160 original size:896 final size:895
Alignment explanation
Indices: 17807618--17816020 Score: 10679
Period size: 895 Copynumber: 9.4 Consensus size: 895
17807608 AGGCATACGG
* * *
17807618 AGAGGGGGACCCGACCAATCTCCGGCTTGCGCATCCCT-CCCCTCTGGCCGACTAAGCGCCCGTA
1 AGAGGGGGACCCGACCGATCCCCGGCTTGCGCAT-CCTGCCCCTCTGGCCGACTGAGCGCCCGTA
* *
17807682 TGCTCG-TTCTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAGGCATACGGAGTTCA
65 CGCTCGTTTC-GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * * * ** * **
17807746 TTCCCAGTCTAAGATCGGATCAGACCGAAGGTTGTGATAGAACATGCTGGGCTCAGGCATGTGCT
129 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCT
* * * *
17807811 CGTGCCGCATTTTTCTTCACCGGGGTACCATCATCGGAGCATCGCCGGAGAACCTGACCGGCGGC
194 GGTGCCGCATTTTTCTTCGCCGGGGTACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGC
* * *
17807876 ATTGGGGTTCCGGCGATCGTGGGGGCCGGGGGGGTGTGCGCACATGGTGTGCGATGGGTGCTGGT
259 ATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
17807941 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAG
323 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAG
*
17808006 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTT
388 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* *
17808071 CAAATGGTCACAAAACCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAA-AAA
453 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* *
17808135 AATACAAGGATC-GTGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
518 AATACAAGGATCACT-TCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATC
* *
17808199 CCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTC
582 CCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * * *
17808264 ACGTGAAGGCTTAAGGGACCAATGTATGACTTTACAAGCCATAAAACTGGCATTGGCATGCAGAA
647 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAA
* * **
17808329 ATATGAAGATGTACCTAAACCCACCTGCCATTCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
712 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * * * *
17808394 TGGCCGACGTAGTGACCACCCGCTCACCGGTCCGCTCGTTTCATCGGTTGGATTAGGCATATGAA
777 TGGCCGACGTAGTG----CCCG--C-CC-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * ** * * *
17808459 GTTCATTCGCAATCTAAGATCGGACCAGATTGAGGGTTGT-GCACCAGGATCGGTAGCACGG
834 GTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGT
* * *
17808520 AGAGGGGGACCCGACCGATCCCCGGCTTGCTCAT-CTCGCCCCTGTGGTCGACTGAGCGCCCGTA
1 AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCT-GCCCCTCTGGCCGACTGAGCGCCCGTA
* * *
17808584 CGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCGTACAGAGTTCAT
65 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * *
17808649 TCCTAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGAGCATGTGCTG
130 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTG
* * * * * * * *
17808714 GTGCTGCATTTTTCTTCGTCGGGGCACCATCG-CTGGAGCATCATCGAAGAACCTAACCGACAGC
195 GTGCCGCATTTTTCTTCGCCGGGGTACCATCGTC-GGAGCATCGTCGGAGAACCTGACCGGCGGC
* * * * *
17808778 ATTGTGGTTCCAACGATCGGGGGGGCCAGGGGGTGTGCACACATGATGTGCGATGGGTGCTTGTA
259 ATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
**
17808843 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGTCAACTCACACCCCCTTAAAGAG-
324 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGC
* *
17808907 AGTTTGAGATTTTATAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
389 A-TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * *
17808972 CAAATGGTCACAACATCTTGTACACTTTGAGTTTTTAGCTGAATATTTTTGTGCATGCCAACAAA
453 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * * *
17809037 AATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACACCTT-TCAAAAAAATTTTAAAAAATC
518 AATACAAGGATCACTTCTACCAAGTTTGGGGCCAAAACTCCTTCT-GAAAAAATTTTAAAAAATC
* *
17809101 CCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
582 CCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * * * *
17809166 TCGTGAAGGCTTAAAGGACCATTGTATGAATTTATAAGCCATAAAAATGGCATTGGCACGTAAAA
647 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAA
* *
17809231 ATGTGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTC
712 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
*
17809296 TAGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
777 TGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * **
17809361 CCAGTCTAAGATTAGACCAGACCAAGGGTTGCGGCAGCTGGATCGATAGCACGT
842 CCAGTCTAAGATTGGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGT
** * ** *
17809415 AGAGGGGGATGCGACCGATGCCCAACTTGCGCAT-CTCGCCCCTCTGGCCGGCTGAGCGCCCGTA
1 AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCT-GCCCCTCTGGCCGACTGAGCGCCCGTA
* *
17809479 TGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCAT
65 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * * * *
17809544 TCCCAATCTAAGATCAGACCGGATCGAGGATTGCGGGAGCACATACTGGGCTTGGGCATGTGCTG
130 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTG
* * ** *** * *
17809609 GTGCCACATTTTTCTTCGCCAGGGTACCATCACCGGAGCATTACCAGAGAACCTTACCGGCGGCA
195 GTGCCGCATTTTTCTTCGCCGGGGTACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCA
* * * * *
17809674 TTGGGGTTCCGGCGATTGGGGGGGCCAGGGGGCT-TGGGCACATGATGTGCGATGGGTGCTCGTA
260 TTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* ** * * *
17809738 CTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCAAGAAGTCACACCCCTTTAAAGTGC
324 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGC
*
17809803 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGAGACACTTTTTTC
389 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * ** *
17809868 GAATGGTCACAAAATCTTGTACACTTCGAGTGTTTAGCTGAATTTTTTTACGCATGCCAAAAAAA
454 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * * *
17809933 AAACATGGATCA-TGCCTACCAAGTTTCGGGCCAAAACTCCTT-TCGAAAAAATTTTAAAAAATC
519 ATACAAGGATCACT-TCTACCAAGTTTGGGGCCAAAACTCCTTCT-GAAAAAATTTTAAAAAATC
* *
17809996 CCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTGTTGCCATGAAACTTC
582 CCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
** *
17810061 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAA
647 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAA
* * * *
17810126 ATATGAAGATGTGCCTAAACCCACCTACCACCCCATCGATCCATGGCTTGAGCATCCCGTTTCTC
712 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * *
17810191 TGGCCGGCGTAGTGCCCGCACGCCCGCGCGTCCACTCGTTTCGTTGGTTGGCTTAGGCATACGGA
777 TGGCCGACGTAGTG--C-C-CG-CC-CGC--CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* ** ** * * * * ** * * *
17810256 GTTCATTCCCAATCTTGGATCAGATCGGACCAAGGTTTACGGTAGCAAGATCAGCAGCACGT
834 GTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGT
* * * * * * ** ** *
17810318 AGAGGGTGACCCGATCGATCCCCGACTTGTGCATCCCGCCCCTCTGGCTGGTTGAGCGCCCCCAT
1 AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGTAC
* * * * *
17810383 GCTCATTTCGTGGGTTGACTTAGGTATACGGAGTTCATTTCTAGTCTAAGCATACGAAGTTCATT
66 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* ** * *
17810448 CCCAGTCTAAGATCAGATTGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
131 CCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGG
* * * * * *
17810513 TGCCGCATTTTTTTTCACCGGGG---CA----C----CATCATCGGAGAACCTGATCGACGGTAT
196 TGCCGCATTTTTCTTCGCCGGGGTACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCAT
* *
17810567 TGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCACACATGATGTGCAATGGGTGCTGGTACT
261 TGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
*
17810632 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
326 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCAT
*
17810697 TTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
391 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* * *
17810762 GTGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAAAAAAAT
456 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* *
17810827 GCAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGA
521 ACAAGGATCACTTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGA
* * *
17810892 ACCGTAAAAAGTTTCAAAAATCATGGAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
586 ACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
*
17810957 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATGT
651 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATAT
* * *
17811022 GAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCATCTCTCTGGC
716 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* * *
17811087 CGACATAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAG
781 CGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
* * * * * * *
17811152 TCTAAGATTAGACCAGACCAAGGGTTGCGGTAGCTGGATCAGCAGCACAT
846 TCTAAGATTGGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGT
* * * *
17811202 AGAGGGGGACGCGACCGATCCCCGGCTTGCGCATCAC-GCCCTTTTGGCCGGCTGAGCGCCCGTA
1 AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATC-CTGCCCCTCTGGCCGACTGAGCGCCCGTA
17811266 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATC-GAGTTCA
65 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA-CGGAGTTCA
* * * * * *
17811330 TTCCCAATCTAAGATCAGACCGGATCGAGGGTTACGGGAGCACATGCTGGGCTTGGGCATGTGGT
129 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCT
* * * ** *
17811395 GGTGCCACATTTTTCTTCGCCAGGGTACCATCATTAGAGCATCGTCGGAGAACCTGATCGGCGGC
194 GGTGCCGCATTTTTCTTCGCCGGGGTACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGC
* * *
17811460 ATTGGGGTTCCGACGATCGTGGGGGCCGGGGGGTGTGCGCACATGGTGTGCGATGGGTGCTGGAA
259 ATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
*
17811525 CTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGC
324 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGC
* *
17811590 TTTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
389 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
*
17811655 AAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
454 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * *
17811720 ATGCAAGGATAACTTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTAAAAAAAATCC
519 ATACAAGGATCACTTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTT-TAAAAAATCC
* * * * * *
17811785 TGAACCATAAAAAGTTTCAAAAATCATGGAAAATAGAAAACGTGTCGTCTTGCCATGAAACTTCA
583 CGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
*
17811850 TGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAA
648 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAA
* * * * *
17811915 TGTGAAGATGTGCCTAAACCCACCTACCAGCCTTTCGATCCATGACTTGCGCATCCCGTCTCTCT
713 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * *
17811980 GGCTGACATAGTGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCATAGGCATACGGAGTTCATTCC
778 GGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* *
17812045 CAGTCTAAGATTGGACCAGACTGAGGGTTGTGGCAGCAGGATTGGCAGCACGT
843 CAGTCTAAGATTGGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGT
* *
17812098 AGAGGGGGTCCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAACGCCCGTAC
1 AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGTAC
* *
17812163 GCTCGTTTCGTGGGTTGACTTAGGCAGACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATT
66 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * * ** *
17812228 CCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGCAGCACATACTGGGCTCCGGCATGTGCAGG
131 CCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGG
* ** * * * * * * *
17812293 TGCCGCTTTTTTCTTCATCGAGGCACCATCGCCAGAGCGTCCTCGGAGAACCTGACCGACGGCAT
196 TGCCGCATTTTTCTTCGCCGGGGTACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCAT
* * * * * *
17812358 TAGGGTTCCGACGATCAGGGGGACCGGGGCGGTTTGCGTACATGATGTGCCATGGGTGCTGGTAC
261 TGGGGTTCCGACGATCGGGGGGGCCGGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* *
17812423 TTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
325 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCA
*
17812488 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCA
390 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
17812553 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAGA-AAAA
455 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA-ACAAAA
* * * * *
17812617 ATACATGGATCA-TGTCTACTAAGTTAGGGGCCAAAACTCTTTCTGAAAAAATTTAAAAAAATCC
519 ATACAAGGATCACT-TCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCC
* * * * *
17812681 CAAACCATAAAAA-TTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCA
583 CGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
*
17812745 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
648 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAA
* * * * *
17812810 TAT---GATGTGCCTAAATCCACCTACTACCCTATCCATCCACGGCTTGCGCATCCTGTTTCTCT
713 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * *
17812872 GGCCGGCATAGTGCCCGCCCGCCCGCGCGTCCACTCGTTCCGTTGGTTGGCTTAGGCATACGGAG
778 GGCCGACGTAGTGCCCGCCCG--C-C-CG----CTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * * * * *
17812937 TTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGACAGCAAGATCGACAACACGC
835 TTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGT
* * * * * * *
17812998 AGAGGAGGACCCGACCGATCTCCGGCTTGTGCATCCTGCCTCTCTGGCCGGCTGAGTGCCCGCAC
1 AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGTAC
* *
17813063 ACTCGTTTCGTGGGTTGACTTAGGCATACGCAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
66 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * * * *
17813128 CCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGCAGCACATACTGGGCTTCGACATGTGCTGG
131 CCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGG
* * * * * *
17813193 TGCCG-TTTCTTTCTTCGCCGAGGCACCATCGTCGGAGCGTTC-TCGGAGAGCCTGACCGACGGC
196 TGCCGCATT-TTTCTTCGCCGGGGTACCATCGTCGGAGC-ATCGTCGGAGAACCTGACCGGCGGC
* * * * * *
17813256 ATTGGGGTTCCGGCGATCGGGAGGACTGGGGGGGTTTGCGTACATGATGTGCGATGGGTGCTGGT
259 ATTGGGGTTCCGACGATCGGGGGGGC-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* *
17813321 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACCCCCCCTTAAAAAG
323 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAG
* * *
17813386 CATTTGAGATTTTACAGGTTTGCTACTAGTATTCC-TTAAAGTGTCTGAAATGGGGACACTTTTT
388 CATTTGAGATTTTACAGGTTTGCTGCCAGTA-GCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * *
17813450 TCGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAAGAA
452 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* * *
17813515 AAATACAAGGATCA-TATCTACCAAGTTTAGGGTCAAAACTCCTT-TCGAAGAAATTTTAAAAAA
517 AAATACAAGGATCACT-TCTACCAAGTTTGGGGCCAAAACTCCTTCT-GAAAAAATTTTAAAAAA
* * * *
17813578 TCCCGAACAGCAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
580 TCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * * *
17813643 TCACGTGAGGGCTTAAGGGACCATTGTATGAATTTACAAGACTTAAAAATGGCATTGGCATCCAA
645 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAA
* *
17813708 AAATATGAAGATGTGCCTAAACCCACCAACCACCCTATTGATCCACGGCTTGC-CTATCCCGTCT
710 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC-ATCCCGTCT
** * * * *
17813772 CTCTGGCCGGTGTAGTACCTGCCCACCCGCTCAG-TTCGTCTGTTGGCTTAGGCATACGGAGTTC
774 CTCTGGCCGACGTAGTGCCCGCCCGCCCGCTC-GTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * * * * * * * *
17813836 ATTCCTAGTCTAAGATTAGATCAGACCAAGGGTTGTGGCAGCACATGTTGGGCTCGGGCATGT
838 ATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGTGGCAG--CAGGATCGG--C-AGCACGT
** * **** * * * * * * * *
17813899 -GCTGGTG--CCGCATTTTTCCTC-ACTGGGGCA-CCAT--CGC-C-GG-AGAACCTGACCGTCC
1 AGAGGGGGACCCG-ACCGATCCCCGGCTTGCGCATCC-TGCCCCTCTGGCCG-A-CTGAGCGCCC
* * * * *
17813954 GCACGCTCGTTTCATGAGTTGACTTGGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTT
62 GTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * * * *
17814019 CATTCCCAATCTAAGATCGGACCGAACCAAGGGTTGCGGCAGCACATGCAGGGCTTAGGCATGTG
127 CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTG
* * * ** * *
17814084 TTGGCGTCGCATTTTTCTTCGTTGGGGCT-CCATCGTCGGAGCATCGTCGGAGAACCTGAGCAGC
192 CTGGTGCCGCATTTTTCTTCGCCGGGG-TACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGC
* * * * * *
17814148 AGTATTGGGGTTCCGACGATCGGGGGGGCTGGGGGGTGTGCGCACATGGTATGCGATGGGTGCTC
256 GGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* * *
17814213 ATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCTCTTAAAG
321 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAG
* * *
17814278 AGCATATGAGATTTTACAGGTTTGCT-ACAGTAGCC----AAGTGTCTGAAATAGGGACACTTTT
386 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * * *
17814338 TTCGAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAAGA
451 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* * * * * ** *
17814403 AAAATGCAAGGATTACATCTACCAAGTTCGGGGCCAAAAATCCTTCCAAAAAAATTTCAAAAAAA
516 AAAATACAAGGATCACTTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTT-TAAAAAA
* *
17814468 TCCTGAATCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
580 TCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * * *
17814533 TCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCACAAAAATAGCATTGGCATGCAG
645 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAA
* *
17814598 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGAATCTCGTCTC
710 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * * *
17814663 ACTGGCCGACGTAGTGCCCGCCCGCCAGCCCGTTT-GATCAGTTGGCTTAGGCATACAGAGTTCA
775 TCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCG-TCGGTTGGCTTAGGCATACGGAGTTCA
* * *** * * * *
17814727 TTCCCTA-TGTAAGATTGGACTAGGTTGAGGGTTATGGTAGCAGGATCAGCAGCACGC
839 TTCCC-AGTCTAAGATTGGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGT
* * * * * * * *
17814784 AGAAGGGGACCCGATCGATCCCCAGCTTGCACATCCCGCCCCTCTGGCTGGCTGAGCACCCGTAC
1 AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGTAC
* * *
17814849 GCTCATTTCGTGGGTTGACTAAGGCGTACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
66 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * * * **
17814914 CCCAGTCGAAGATCGGACCAGATCGAGGGTTGCGGCAGCACATGCTAGGCAGGGGCATGTGCTGG
131 CCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGG
* * * *
17814979 T-CCTGCATTTTTCTTCGTCGGGGTGCCATCGTCGTAGCATCG-CAGGAGAACCTGACCGGTGGC
196 TGCC-GCATTTTTCTTCGCCGGGGTACCATCGTCGGAGCATCGTC-GGAGAACCTGACCGGCGGC
* * * * * *
17815042 ATTGGGGTTCCGGCGATCGAGGGGGCCGGGGGGGTGTGCTCACTTAATGTGCGATGGGTGCTAGT
259 ATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
17815107 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAG
323 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAG
17815172 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
388 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
*
17815237 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATACCAACAAA
453 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * * *
17815302 AATAAAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTACTTCT-AAAAATATTTTAAAAAATC
518 AATACAAGGATCACTTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA-ATTTTAAAAAATC
* * * * *
17815366 CCTACCCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCATCTTACCACGAAACTTC
582 CCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* ** **
17815431 ACGTGAAGGCTTAAGGGACCATTGTATGAATGTACAAGCCATAAGCATGGCATTGGCACACAAAA
647 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAA
* * *
17815496 ATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACGGCTTGCGCAACCCATCTCTC
712 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * *
17815561 TGGCCGGCGTAGCGCCCGCACGAATGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGA
777 TGGCCGACGTAGTG--C-C-C----GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * * * * ** **
17815626 GTTCATTTCCAGTCTAAGATCGGATCGGACTGAGGGTTGCT-GTAGCAGGATCAACAGCACAC
834 GTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTG-TGGCAGCAGGATCGGCAGCACGT
* * * * * * * * * * *
17815688 AAAGGAGAACCCGATCGATCCCCTGCTTGTGCATTCC-GCCCCTCTGGTCGATTGAGCACCTGTC
1 AGAGGGGGACCCGACCGATCCCCGGCTTGCGCA-TCCTGCCCCTCTGGCCGACTGAGCGCCCGTA
* * *
17815752 CGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTGCCAGTCTAAGCATACGGAGTTCAT
65 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* ** * *
17815817 TCCCAGTCTAAGATC-GACCCGGACTGAGGGTTTTGACAGCACATGCTGGGCTTGCGCATGTGCT
130 TCCCAGTCTAAGATCGGA-CCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCT
** * * * *
17815881 GGTGCCATATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCG-CAGGAGAACCTGATCAGCGG
194 GGTGCCGCATTTTTCTTCGCCGGGGTACCATCGTCGGAGCATCGTC-GGAGAACCTGACCGGCGG
* * * ** *
17815945 CATTGGGGTTTCAACGATCGGGGGGGTCGGGGAGGGTGTATGCACATGATGTGCGATGGGTGCTA
258 CATTGGGGTTCCGACGATCGGGGGGG-CCGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTG
17816010 GTACTTGGCCC
321 GTACTTGGCCC
17816021 ACATATGGAG
Statistics
Matches: 6548, Mismatches: 834, Indels: 235
0.86 0.11 0.03
Matches are distributed among these distances:
884 265 0.04
885 6 0.00
886 8 0.00
887 10 0.00
888 15 0.00
889 138 0.02
890 265 0.04
891 201 0.03
892 688 0.11
893 15 0.00
894 183 0.03
895 1337 0.20
896 845 0.13
897 391 0.06
898 22 0.00
899 12 0.00
900 621 0.09
901 340 0.05
902 487 0.07
903 272 0.04
904 382 0.06
905 45 0.01
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (895 bp):
AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGTAC
GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
CCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGG
TGCCGCATTTTTCTTCGCCGGGGTACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCAT
TGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCAT
TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
ACAAGGATCACTTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGA
ACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATAT
GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
CGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
TCTAAGATTGGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGT
Found at i:17813123 original size:26 final size:26
Alignment explanation
Indices: 17813086--17813138 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17813076 GTTGACTTAG
17813086 GCATACGCAGTTCATTCCCAGTCTAA
1 GCATACGCAGTTCATTCCCAGTCTAA
*
17813112 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGCAGTTCATTCCCAGTCTAA
17813138 G
1 G
17813139 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGCAGTTCATTCCCAGTCTAA
Found at i:17814011 original size:26 final size:26
Alignment explanation
Indices: 17813981--17814033 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17813971 GTTGACTTGG
*
17813981 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
17814007 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
17814033 G
1 G
17814034 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:17815806 original size:26 final size:26
Alignment explanation
Indices: 17815776--17815828 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17815766 GTTGACTTAG
*
17815776 GCATACGAAGTTCATTGCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
17815802 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17815828 G
1 G
17815829 ATCGACCCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17816214 original size:245 final size:242
Alignment explanation
Indices: 17815784--17816262 Score: 685
Period size: 245 Copynumber: 2.0 Consensus size: 242
17815774 AGGCATACGA
* * * *
17815784 AGTTCATTGCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGACCCGGACTGAGGGTT
1 AGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGACCCAGACCGAGGGTT
** *
17815849 TTGACAGCACATGCTGGGCTTGCGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCG
66 GCGACAGCACATGCTGGGCTTGCGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCC
* * *
17815914 TCGGAGCATCGCAGGAGAACCTGATCAGCGGCATTGGGGTTTCAACGATCGGGGGGGTCGGGGAG
131 TCGGAGCATCACAGGAGAACCTGACCAGCGGCATTGGGGTTTCAACGATC-GGGGGG-CCGGG-G
* *
17815979 GGTGTATGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCACATATGG
193 GGTGTACGCACATGATGTGCGATGGGTGCTAGTACTAGGCCCACATATGG
17816029 AGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGA-CCAGACCGAGGGT
1 AGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATC-GACCCAGACCGAGGGT
* * *
17816093 TGCGACAGCACATGCTGGGCTTGGGCATGTGCTGGTGTCGTATTTTTCTTCGTCGGGGCACCATC
65 TGCGACAGCACATGCTGGGCTTGCGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATC
* ** *
17816158 C-CTGGAGGATCATTGGAGAACCTGACC-GACGGCATTGGGGTTTCAGCGATCGGGGGGCCGGGG
130 CTC-GGAGCATCACAGGAGAACCTGACCAG-CGGCATTGGGGTTTCAACGATCGGGGGGCCGGGG
* * *
17816221 GGTGTGCGCACTTGATGTGCGGTGGGTGCTAGTACTAGGCCC
193 GGTGTACGCACATGATGTGCGATGGGTGCTAGTACTAGGCCC
17816263 TTATACTGGC
Statistics
Matches: 209, Mismatches: 22, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
242 38 0.18
243 4 0.02
244 8 0.04
245 157 0.75
246 2 0.01
ACGTcount: A:0.19, C:0.23, G:0.33, T:0.25
Consensus pattern (242 bp):
AGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGACCCAGACCGAGGGTT
GCGACAGCACATGCTGGGCTTGCGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCC
TCGGAGCATCACAGGAGAACCTGACCAGCGGCATTGGGGTTTCAACGATCGGGGGGCCGGGGGGT
GTACGCACATGATGTGCGATGGGTGCTAGTACTAGGCCCACATATGG
Found at i:17816958 original size:26 final size:26
Alignment explanation
Indices: 17816920--17816975 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
17816910 TGGGTTGACT
17816920 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
* *
17816946 TAAGCATAGGGAGTTCATTCCTAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
17816972 TAAG
1 TAAG
17816976 ATCGGATCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:17817847 original size:26 final size:26
Alignment explanation
Indices: 17817808--17817860 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17817798 GTTGACCTAG
*
17817808 GCATACGAAATTCATTCTCAATCTAA
1 GCATACGAAATTCATTCCCAATCTAA
* * *
17817834 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAATTCATTCCCAATCTAA
17817860 G
1 G
17817861 ATCAGATCAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACGAAATTCATTCCCAATCTAA
Found at i:17818507 original size:885 final size:882
Alignment explanation
Indices: 17816031--17819504 Score: 4326
Period size: 892 Copynumber: 3.9 Consensus size: 882
17816021 ACATATGGAG
* *
17816031 TTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGC
1 TTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGC
* * * *
17816096 GACAGCACATGCTGGGCTTGGGCATGTGCTGGTGTCGTATTTTTCTTCGTCGGGGCACCATCCCT
66 GACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCA---C-
* * *
17816161 GGAGGATCATTGGAGAACCTGACCGACGGCATTGGGGTTTC-AGCGATCGGGGGGCCGGGGGGTG
127 --ACG--C--CGGAGAACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGGCCGGGGGGTG
* * * * * *
17816225 TGCGCACTTGATGTGCGGTGGGTGCTAGTACTAGGCCCTTATACTGGCCCCCAATCCCTCATCAA
185 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
** *
17816290 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATGGGTTTGCTGCCAGCAGCCAT
250 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* * *
17816355 TAAAGTGTTTGAAACGGGGAGACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTT
315 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTT
* * *
17816420 AGCTGAATTTTTTTGTGCATGCCAACAAAAATAAAAGGATCATGTCTACCAAGTTTGGGGCTAAA
380 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* * * * *
17816485 ACTCCTT-TAAAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTCGAAAGTCATAAAAAATA
445 ACTCCTTCT-GAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATA
*
17816549 AAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
509 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* * *
17816614 AGCCATAAAAATGGCATTGACATGCAGCAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
574 AGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * *
17816679 CGTTCCACGGCTTGCGCATCCCGTCTTTCTGGCCGGCGTAGTGCCCACCCGTCCGCCCGCCCGTT
639 CGATCCACGGCTTGCGCAT-CTGTCTCTCTGGCCGGCGTAGT---CA-CC--CCGCCCGCCCGCT
* ***
17816744 CGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAAACCAGACTGAGGG
697 CGTTTCGTCGGTTGGCTTAGGCATATCGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGG
* * *
17816809 TTGCGGCAGCAGGATCGACAGCACGTAGAGGGGGACCCAACCAATCCCCGACTTGCGCATCCCGC
762 TTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGC
* * * * *
17816874 CCCTCTAGCCGGTTGAGCACGCGCACGCTCATTTCTTGGGTTGACTTAAGCATACGGA
827 CCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCTTGGGTTGACCT-AGCATAC-GA
* * * * * *
17816932 GTTCATTCCCAGTCTAAGCATAGGGAGTTCATTCCTAGTCTAAGATCGGATCAGATCGAGGGTTA
1 -TTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG
* * * * * * * ** *
17816997 TGGCAGCACGTGCTAGGCTCAGGCGTGTGCTGGTGCCACATTTTTCTTCACCGAGGCACCA-TCG
65 CGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCACACG
** * * * * *
17817061 ATGGAGAACCTGACCGGCGGCATTAGGGTTCCGACAATTGGGGGGGCCGGGGGGTGTGCGTACAT
130 CCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGA-TCGGGGGGCCGGGGGGTGTGCGCACAT
* *
17817126 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGACCCCTATCCCTCATCAAACCTCAAGA
194 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
*
17817191 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTC
259 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
*
17817256 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATA
324 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATT
** * * *
17817321 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTCAGCGTCAAAACTCCTTCC
389 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT
* * * *
17817386 GAAAAAGTTTTAAAAAATCTCGAACAGT-AAAAGTTTCAAAAATCGTGAAAAATAGAAAAGGAGT
454 GAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
17817450 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
519 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
** ** * *
17817515 ATGGCATTGGCACATAGAAATACAAAGATGTGCCTAAACCCGCCTGCCACCCTATCGATCCACGG
584 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* ** * *
17817580 CTTGCGCATCTCGTCCCTCTGGTTGG-GTAGTGCCAGCCCGCCCGCCCGCTCGTTTCGTTGGTTG
649 CTTGCGCATCT-GTCTCTCTGGCCGGCGTAGT--CACCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * *
17817644 GCTTAGGCATA-CGAGTTCATTCCCAGTCTAAGATTTGACTAGACTGAGGGTTGTGGCAGCAGGA
711 GCTTAGGCATATCGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGCGGCAGCAGGA
* * * **
17817708 TAGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCACCCCTCTGGTTGGCT
776 TCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCT
* * *
17817773 GAGCGCCCGCACGCGCGTTTTTTGGGTTGACCTAGGCATACGAAA
841 GAGCGCCCGCACGCTCATTTCTTGGGTTGACCTA-GCATACG--A
* * * * *
17817818 TTCATTCTCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAAACCGAGGGTTTC
1 TTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGC
*
17817883 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCA-ACGC
66 GACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCACACGC
* ** *
17817947 CGGAGAACCGGACCGACGTTATTGGGGTTCCGACGATCAGGGGGCCGGGGGGTGTGCGCACATGA
131 CGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGA
* * *
17818012 TGTGCGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATGAAACCTCGAGAAC
196 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * *
17818077 TCACACCCCCTTAATGAGCATGTGAGGTTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
261 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * *
17818142 AAATGGGGACACTTTTTTTAAATGGTAACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
326 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAA--TT
* * * *
17818207 TTTTTTTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTACT
389 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT
*
17818272 GAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATTGAAAACGAG
454 GAAAAAATTTT-AAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
* * * * *
17818337 TCGTCTTGCCATGAAACTTCACGTCAAGGTTTAGGGGACCATTGCATGAATTTACAAGCCGTAAA
518 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * *
17818402 AATGGCATTGGCATGCAGAAATATGAAGATGTGCTTGAACCCACCTACCACCCTATCGATCCACG
583 AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* *
17818467 GCTTGCGCATCCTGTGTCTCTGGCCGGCGTAGTACCCGCCCGCCCGCCCGCTCGTTTCGTCGGTT
648 GCTTGCGCAT-CTGTCTCTCTGGCCGGCGTAGT-CAC-CCCGCCCGCCCGCTCGTTTCGTCGGTT
* * * * *
17818532 GGCTTAGGCATA-CGGAGTTTATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGACAGCAG
710 GGCTTAGGCATATC-GAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGCGGCAGCAG
* * * * * * *
17818596 GACCGACAACATGTAGAGGGGGACCCGACCGATCCTC-AGCTTACGCATCCCGCCCCTTTGGCCG
774 GATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGA-CTTGCGCATCCCGCCCCTCTGGCCG
* *
17818660 GCTGAGCGCTCGCACGCTTATTTCTTGGGTTGA-CT----TA-G-
838 GCTGAGCGCCCGCACGCTCATTTCTTGGGTTGACCTAGCATACGA
*
17818698 -------GC-A--T-AG---A--GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGC
1 TTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGC
* * **
17818747 GATAGCA-ATTGCTGGCCTCGGGCATGTGCTGGTGATGCATTTTTCTTCGTCGAGGCACCATCGC
66 GACAGCACA-TGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCA---C
* * *
17818811 TGGAGCATTGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCTGGGGGGG
127 ---A-C---GCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGC-CGGGGGG
* * *
17818876 TGTGCGCACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGTCGCCTATCCCTCATC
183 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* *
17818941 AAACCTCGAGAACTTACACCCCCTTAAAGAGCATTTGATATTTTACAGGTTTGCTGCCAGTAGCC
248 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * *
17819006 ATTAAAGTGTCTAAAATGGGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTCGAGTTT
313 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTT
* * *
17819071 TTAGCAGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACGAAGTTTGGGGCCA
378 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * ** * *
17819136 AAACTTCTTC-CAAAACATTTTAAAAAATCTCGAATTGTAAAAAGTTTTAAAAATCGTGAAAAAT
443 AAACTCCTTCTGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAAT
* *
17819200 AGAAAACGAGCCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
508 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * *
17819265 AAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTA-TATCCTA
573 AAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * *
17819329 TC--TCTC-TGGC-TG-GCAT-AG------T-GCC--C---G----CTCGCCCGTCCGCTCGTTT
638 TCGATC-CACGGCTTGCGCATCTGTCTCTCTGGCCGGCGTAGTCACCCCGCCCGCCCGCTCGTTT
* *
17819372 CGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATTGGACCAGATTGAGGGTTGCG
702 CGTCGGTTGGCTTAGGCATATCGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGCG
* * * *
17819437 GTAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCTCATCCCGCCCCTC
767 GCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTC
17819502 TGG
832 TGG
17819505 TACTTGCTAG
Statistics
Matches: 2253, Mismatches: 286, Indels: 120
0.85 0.11 0.05
Matches are distributed among these distances:
848 130 0.06
854 1 0.00
857 1 0.00
859 3 0.00
860 1 0.00
863 1 0.00
864 91 0.04
866 2 0.00
868 4 0.00
869 4 0.00
870 6 0.00
871 2 0.00
872 9 0.00
873 150 0.07
874 9 0.00
875 95 0.04
876 6 0.00
877 194 0.09
883 1 0.00
884 209 0.09
885 275 0.12
886 104 0.05
887 16 0.01
888 170 0.08
889 52 0.02
890 126 0.06
891 199 0.09
892 285 0.13
895 1 0.00
902 106 0.05
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (882 bp):
TTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGC
GACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCACACGC
CGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGA
TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTT
TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGA
AAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
TGCGCATCTGTCTCTCTGGCCGGCGTAGTCACCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
GGCATATCGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGCGGCAGCAGGATCGAC
AGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
CCCGCACGCTCATTTCTTGGGTTGACCTAGCATACGA
Found at i:17820222 original size:26 final size:26
Alignment explanation
Indices: 17820186--17820235 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
17820176 GACTTAGGCG
17820186 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
*
17820212 TACGGAGTTCATTCCCAGTGTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
17820236 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:17821992 original size:26 final size:26
Alignment explanation
Indices: 17821956--17822034 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
17821946 GTTGACTTAG
*
17821956 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATAAGGAGTTCATTCCTAGTCTAA
17821982 GCATAAGGAGTTCATTCCTAGTCTAA
1 GCATAAGGAGTTCATTCCTAGTCTAA
*
17822008 GCATAAGGAGTTCATTCCTAGTGTAA
1 GCATAAGGAGTTCATTCCTAGTCTAA
17822034 G
1 G
17822035 ATCGGACTGG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.30
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCTAGTCTAA
Found at i:17822916 original size:26 final size:26
Alignment explanation
Indices: 17822879--17822931 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17822869 GTTGACTTAG
17822879 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
17822905 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17822931 G
1 G
17822932 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17823824 original size:24 final size:25
Alignment explanation
Indices: 17823777--17823827 Score: 77
Period size: 24 Copynumber: 2.0 Consensus size: 25
17823767 GTTAACTTAG
17823777 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCA-TCCCAGTCTAA
*
17823803 GCATATGGAGTTC-TCCCAGTCTAA
1 GCATACGGAGTTCATCCCAGTCTAA
17823827 G
1 G
17823828 ATTGAACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 12 0.50
26 12 0.50
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.27
Consensus pattern (25 bp):
GCATACGGAGTTCATCCCAGTCTAA
Found at i:17824373 original size:886 final size:886
Alignment explanation
Indices: 17821227--17824808 Score: 4132
Period size: 898 Copynumber: 4.0 Consensus size: 886
17821217 GATCAGCGGC
* *
17821227 ATTGAGGTTCCGACGATCGGGGGGCCGGGGGGTATGCGCACATGATGTGCGATGGGTGCTGGTGC
1 ATTGAGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* * * *
17821292 TTGGCCCTTATATTGGCCCCCTATCCGTCATCAAATCTCAAGAATTCACACCCCCTTAAAAAGCA
66 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCA
* * *
17821357 TTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTCTCTGAAATGGGGACATTTTTTTCA
131 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* *
17821422 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGACAAAAAAAA
196 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* *
17821487 TACAAGGATCACGCCTACCAAGTTTGGGGCCAAAA-TGCTTTCG-AAAAATTTTAAAAAATCCCG
261 TACAAGGATCACGCCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCG
** ** * *
17821550 AATGGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAGG
326 AACCGCAAAAAGTTTTGAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACG
* * *
17821615 TGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATA
391 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATA
* ** ** *
17821680 TGAAGATATGCTTAAACCCACCTACCACCCTATCGATCCGTGGCTTGCTTATCCCGTCTCTTTGG
456 TGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * * *
17821745 CCGACGTAGTACCCACCCACCCGTCCGCCCTC-TCGATTCATCGGTTGGCTTAGGCATACGGAGT
521 CCGGCGTAGTGCCCGCCCGCCCG-CC-CGCTCAT---TTCATCGGTTGGCTTAGGCATACGGAGT
* ** * * **
17821809 TCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCA-CATGC-TAG---GC---TC
581 TCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCCGTAGCACGCAGAGG
** * * * ** * * * ** * * **
17821866 GGG-CATGTCCTGGTGCCTTATTTTTCTTCATCGGGGCACCATC--ACCGGAGAACCTGACTGCC
646 GGGACCCGACC-GATCCCCGA-CTTGC-GCATC-CCGC-CCCTCTGGCCGGCTAA----AC-GCC
* * * *
17821928 CGCACTCTCGTTTCGTGAGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATAAGGAGT
701 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
*
17821993 TCATTCCTAGTCTAAGCATAAGGAGTTCATTCCTAGTGTAAGATCGGACTGGACCGAGGGTTGCG
766 TCA-TCCCAG--T---C-T-A--AG---A-T-C-------AGA-C---C-GGACCGAGGGTTGCG
* *
17822058 GCAGCACATGCTGGGCTC-AGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCATCATCGTC
804 ACAGCACATGCTGGGCTCGA-GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG---CA----C
* * * * *
17822122 GAAGCATCGTCGGAGAACCTGATCGACAGC
861 ----CATCGTCGGAAAACCTAACCGACGGT
* * * *
17822152 ATTGAGGTTTCAATGATCGGGGGG-CGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTAC
1 ATTGAGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* * * *
17822216 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGACAACTCACTCCCCCTTAAAGAGAA
66 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCA
* * * *
17822281 TTTGAGATTTTCCAGGTTTGCTCCCAGTAGCAATTAAAATGTCTGAAATGGGGACACTTTTTTCA
131 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* **
17822346 AATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTAAATGCCAACAAAAA
196 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * ** * **
17822411 TAAAAGGATCACGTCTACCAAGTTTGGGGTGAAAACTCTTTCCGAAAAAATTTTAAAAAATCTGG
261 TACAAGGATCACGCCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCG
* * * *
17822476 AACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAGACGAGTCGTCTTGCCATGAAACTTCACG
326 AACCGCAAAAAGTTTTGAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACG
*
17822541 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAACGGCATTGGCGCATA-AG-AA
391 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT-G-GCATACAGAAA
* *
17822604 TATGAAGATTTTCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
454 TATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
** * ** *
17822669 GGCCGGCGTAGTGCCCGCCCGTACGCCCGCTCGTTTTGTCGGTTGACTTAGGCATA-GAGAGTTC
519 GGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACG-GAGTTC
* * * * * * *
17822733 ATTCCCAGTCTAAGAACAAACCAGACCGAGAGTTGTAGCAGCAGGATCGGTAGCACGTAAAGGGG
583 ATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCCGTAGCACGCAGAGGGG
** * * * * ** * * *
17822798 GACCCGGTCGATCCTCGGCTTGAGCATCCCGTCTTTCTGGCCAGCTGAGA-GCCCGCACGCTCAT
648 GACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCT-AAACGCCCGCACGCTCGT
* * *
17822862 TTTGTTGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
712 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA-TCCCAGT
* * **
17822927 CTAAGATCAGACCGGACCAAGGGTTGC-AGCAGCACATGCTGGGCTCGGGACA-GTGCTGGTTTC
776 CTAAGATCAGACCGGACCGAGGGTTGCGA-CAGCACATGCTGGGCTCGAG-CATGTGCTGGTGCC
* * **
17822990 TCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGGT
839 GCATTTTTCTTCGTCGGGGCACCATCGTCGGA--A--AAC--CTAACC-GA-CGGT
* * * * * *
17823046 GGCATTGGGGTTCCGGCGATCGGAGGGGCC-GGGGGTGTGCCCGCATGATGGGCGATGGGTGCTT
1 ---ATTGAGGTTCCGACGATCGG-GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* *
17823110 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAGTCACACCCCCTTAAAG
62 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAG
*
17823175 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTATT
127 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* ** * * *
17823240 TTCGAATGGTCACAAAAAGTTGTACACTTCCAGTTTTTAGC-CAATTTGTTTTGTGCATACCAAC
192 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT-TTTTGTGCATGCCAAC
* * * **
17823304 AAAAATTCAAGGATCAC-CTCTACCGAGCTTAAGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
256 AAAAATACAAGGATCACGC-CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* * *
17823368 ATCTC-AGACCGCAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACAAGTCGTCTTGCCATGAAA
320 ATCCCGA-ACCGCAAAAAGTTTTGAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAA
* *
17823432 CTTCACGTGAACGCTTAAGGGACCATTGTATGAATTTACAAGCCATATAAATGGCATTGGC-TAA
384 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT-A
* * *
17823496 CAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTACGCATTCCGT
448 CAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * *
17823561 CTCTTTGGCCGGCGTAGTGCCTGCCCGCCCGCCCGCTCATTTCATCGGTTGGTTTAGGTATACGG
513 CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGG
*
17823626 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCCGTAGCACACAG
578 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCCGTAGCACGCAG
** *
17823691 AGGGGGACCCGACCGATCCCCGACTTGCGCATCTTGCCCCTCTGGCCGGCTAAACGCCCGCATGC
643 AGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTAAACGCCCGCACGC
* * *
17823756 TCGTTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTC-TCCC
708 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATCCC
* *
17823820 AGTCTAAGAT-TGAACCGGACCGAGGGTTTCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTG
773 AGTCTAAGATCAG-ACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTG
* * *
17823884 CCGTATTTTTCTTCGCCGGGGCACCATCGCCGGAAAACCTAACCGACGGT
837 CCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAAAACCTAACCGACGGT
* *
17823934 ATTGGGGTTCTGACGATCGGGGGGCCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
1 ATTGAGGTTCCGACGATCGGGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
17823999 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAG
64 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAG
*
17824064 C-TTTGAGATTTAACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
129 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
17824128 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
194 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * * *
17824193 AATACAAGGATCACGCCTACAAAGTTTGTGGCCAAAACTCCTTCCGAAAATATTATAAAAAATCC
259 AATACAAGGATCACGCCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* * *
17824258 CGAACTGCAAAAAGTTTTGAAAATCACGAAAAATAAAAAAGGAGTCGTCTTGCCATGAAACTTCA
324 CGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCA
* * *
17824323 CGTGAAGGCTTAAAGGACTATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAA
389 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAA
* * * *
17824388 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACACGGCTTGCGCGTCCCATCTCTCT
454 TATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * *
17824453 GGCCGGCGTAGTGCCCGCTTGCCCGCCCGCCTGCTCATTTCATCGATTGGCTTAGGCATACGAAG
519 GGCCGGCGTAGTG-CC-C--GCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAG
* * * * * * *
17824518 TTTATTCCCAGTCTAAGATCAGACCGGACC-ATGGCTTTCGGTAGCAAGATCCGTAGCACGCAGA
580 TTCATTCCCAGTCTAAGATCAGACCAGACCGA-GGGTTGCAGCAGCAGGATCCGTAGCACGCAGA
* * * * * * * * ***
17824582 GGGGGACTCGATCAATCCTCGGCTTACGCATCCCGCCCCTCTGGTCGGTTGCGCGCCCGCACGCT
644 GGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTAAACGCCCGCACGCT
* * *
17824647 CGTTTTGTGGGTTCG-CCTAGGCATACGGAGTTCATTTCCAGTCTAAGCATACGGAGTTCATTCC
709 CGTTTCGTGGGTT-GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA-TCC
* * ** * *
17824711 CAGTCTAAGATCAGACCAGACCGAGGGTTGCGATAGCACATGCTGGTTTGGGGCATGTGCTGGTG
772 CAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTG
* *
17824776 CCGCATTTTTCATCGTCGAGGCACCATCGTCGG
837 CCGCATTTTTCTTCGTCGGGGCACCATCGTCGG
17824809 GGCACTTTTT
Statistics
Matches: 2281, Mismatches: 315, Indels: 155
0.83 0.11 0.06
Matches are distributed among these distances:
884 6 0.00
885 18 0.01
886 365 0.16
887 105 0.05
888 4 0.00
889 3 0.00
890 204 0.09
892 90 0.04
893 3 0.00
894 5 0.00
895 4 0.00
896 88 0.04
897 85 0.04
898 639 0.28
899 2 0.00
901 1 0.00
902 3 0.00
909 1 0.00
910 1 0.00
911 1 0.00
914 2 0.00
916 1 0.00
917 1 0.00
918 1 0.00
921 2 0.00
922 63 0.03
923 71 0.03
924 250 0.11
925 30 0.01
926 205 0.09
927 4 0.00
928 11 0.00
929 3 0.00
930 6 0.00
931 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (886 bp):
ATTGAGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCA
TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
TACAAGGATCACGCCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCG
AACCGCAAAAAGTTTTGAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACG
TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATA
TGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
CCGGCGTAGTGCCCGCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATT
CCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCCGTAGCACGCAGAGGGGGAC
CCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTAAACGCCCGCACGCTCGTTTCG
TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATCCCAGTCTAAG
ATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTT
TCTTCGTCGGGGCACCATCGTCGGAAAACCTAACCGACGGT
Found at i:17824703 original size:26 final size:26
Alignment explanation
Indices: 17824667--17824719 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17824657 GTTCGCCTAG
*
17824667 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17824693 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17824719 G
1 G
17824720 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17826122 original size:26 final size:26
Alignment explanation
Indices: 17826072--17826124 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17826062 GTCGACTTAG
* *
17826072 GCATACGGAGTTCGATCCTAGTCTAA
1 GCATACGGAGTTCGATCCCAATCTAA
17826098 GCATACGGAGTTC-ATTCCCAATCTAA
1 GCATACGGAGTTCGA-TCCCAATCTAA
17826124 G
1 G
17826125 GTCGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCGATCCCAATCTAA
Found at i:17826999 original size:26 final size:26
Alignment explanation
Indices: 17826963--17827015 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17826953 GTTCACTTAG
*
17826963 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17826989 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17827015 G
1 G
17827016 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17827619 original size:896 final size:888
Alignment explanation
Indices: 17825194--17828647 Score: 4083
Period size: 891 Copynumber: 3.8 Consensus size: 888
17825184 GATGGCTTAG
* * *
17825194 GCATACAGAGTCCATTCCCAATCTAATA-CTAGACCGGACCAAGGGTTGCAGCAGCACATGTTGG
1 GCATACGGAGTCCATTCCCAATCTAAGATC-AGACCGGACCAAGGGTTGCAGCAGCACATGCT-G
* * ** *
17825258 GCTTGGGCATGTGCTGGTGCCACATTTTTTTTCGTTGGAGCACCATCGTCGGAGCATCACCGGAG
64 GATTGGGCATGTGCTGGTGCCGCATTTTTACT-GTCGGAGCACCA-C--CGGAGCATCACCGGAG
* *
17825323 AATCTGACCGACGGCATTGGGGTTCCGACGATCGGGGAGGCCGGGGGGGTGTGCGCACATGATGT
125 AACCTGACCGACGGCATTAGGGTTCCGACGATC--GGA-----GGGGGGTGTGCGCACATGATGT
* * * *
17825388 GCGATGGGTGCTGGCACTTGGCCCTTATTTTGGCACCCTATCCCTCATCAAACCTCGAGAACGCA
183 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
17825453 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCAGCTAGTAGCCATTAAAGTGTCTGAAA
248 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
17825518 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
313 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
17825583 TTGCCTGCCAACAAAAATAAAAGGATCACGATC-ACCAAGTTTGGGGCCAAAACTCCTTTCAAAA
378 GTGCATGCCAACAAAAATACAAGGATCAC-ATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * *
17825647 AAATTTTAAGAAATCCCGAACAGCAAAAATTTACAAAAATCATGAAAAATAGAAAA-GAAGTCGT
442 AAATTTTAAAAAATCCC-AAC-GCAAAAAGTTACAAAAATCGTGAAAAATAGAAAACG-AGTCAT
* * *
17825711 CTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCAATGTATGAATTTACAAGTCATAAAAATG
504 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
17825776 GCATTGGCACGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
569 GCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
17825841 GCGTATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCTTGCCCGCCCGCCCGCTCATTTCGTCGGTT
634 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCTCGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * * *
17825906 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCCGACCAGACCGAGGGTTGTGATAGCAGG
699 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGTGACAGCAGG
*
17825971 ATC-AGCAGCACGCAGAGGGGGACCCGACCGATCC-CTGGCTTTCGCTTCTCGCCCCTCTGGCCG
764 ATCGA-CAGCACGCAGAGGGGGACCCGACCGATCCTC-GGCTTTCGCATCT-GCCCCTCTGGCCG
* * ** *
17826034 ATTGAGCGCCCTCACGCTCGTTTCGTGGGTCGACTTAGGCATACGGAGTTCGA-TCCTAGTCTAA
826 GTTGAGCGCCCGCACATTCGTTTCGTGGTTC-ACTTAGGCATACGGAGTTC-ATTCCTAGTCTAA
* * * * * *
17826098 GCATACGGAGTTCATTCCCAATCTAAGGTCGGACTGGACCAAGGGTTGTAGCAGCACATTCTGGG
1 GCATACGGAGTCCATTCCCAATCTAAGATCAGACCGGACCAAGGGTTGCAGCAGCACATGCT-GG
* * * ** * * **
17826163 CTCGGGCATGTGCTGGTGCCGTATTTTT-CT-TCGCTGGAGCACCGTTGC--CA---GAGAACCT
65 ATTGGGCATGTGCTGGTGCCGCATTTTTACTGTCGGAGCACCACCGGAGCATCACCGGAGAACCT
* * * * *
17826221 AACCGACGGAATTAGGGTTCTGACGATCGGGGGGGCGGGGGGTGTGCGCACATGATGTGTGATGG
130 GACCGACGGCATTAGGGTTCCGACGATC-----GGAGGGGGGTGTGCGCACATGATGTGCGATGG
* * * * *
17826286 GTGCTGGAACTTGGCCCTTATATTGGCGCCCTATCCCTCATCAAACCTTGAGAACTCAGACCCCT
190 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * *
17826351 TTAAAGAGC-TTTGAGATTTAACAAGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGAC
255 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* *
17826415 ACTTTATTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTACATG
320 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* *
17826480 CCAACAAAAATACAAGGATCACATCTACAAAGTTTGTGGCCAAAACTCCTTCC-AAAAATATTTT
385 CCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA-ATTTT
* ***
17826544 AAAAAATCTCAAACTGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCAT
449 AAAAAATC-CCAAC-GCAAAAAGTTACAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCAT
17826609 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
512 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * *
17826674 ACACAGAAATATGAAAATGTTCCTAAACCCACCTACCACCCTATCGATCCACGGCTTTCGCATCC
577 ACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* ** *
17826739 CGTCTCTCTGGCCCGGCGTAGTGCCCGCCCGCCCAACCGCCCGCTCGTTTCATCGGTTGGCTTAG
642 CGTCTCTCTGG-CCGGCGTAGTGCCCGCTCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* *
17826804 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTGACAGCAGGATCGACA
706 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGTGACAGCAGGATCGACA
** * * *
17826869 GCATACAGAGGGGGACCCGATCGATCCTCGGCTTTCACATCGTGCCCCTCTGGCCGGCTGAGCGC
771 GCACGCAGAGGGGGACCCGACCGATCCTCGGCTTTCGCATC-TGCCCCTCTGGCCGGTTGAGCGC
*
17826934 CCGCACATTTGTTTCGTAGGTTCACTTAGGCATACGGAGTTCATTCCTAGTCTAA
835 CCGCACATTCGTTTCGT-GGTTCACTTAGGCATACGGAGTTCATTCCTAGTCTAA
* * * * *
17826989 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CAGAGTGTTACGGCAGCACATGCTGG
1 GCATACGGAGTCCATTCCCAATCTAAGATCAGACCGGACCA-AGGGTTGCAGCAGCACATGCTGG
* * * ***
17827053 TTTGGGGCATGTGCTGGTGCCGCATTTTTAATTGTCGGGGCACCATCGTCGGAGCATTGTCGGAG
65 ATT-GGGCATGTGCTGGTGCCGCATTTTT-ACTGTCGGAGCACCA-C--CGGAGCATCACCGGAG
* * * **
17827118 AACCTGACCGGCGGCATTGGGGTTTCGAATATC-GAGGGGGGTGTGCGCACATGATGTGCGATGG
125 AACCTGACCGACGGCATTAGGGTTCCGACGATCGGAGGGGGGTGTGCGCACATGATGTGCGATGG
* * * *
17827182 GTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCATCGTCACACCTCGAGAACTCACACCCCC
190 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * *
17827247 TTAAAGACCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGAGAT
255 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
*
17827312 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTTTGTGCATG
320 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * *
17827377 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTCCGAAAAACTTTTA
385 CCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
* *
17827442 AAAAATCCCAAC-CATAAAAGGTTACGAAAATCCTGAAAAATAGAAAACGAGTCATCTTGCCATG
450 AAAAATCCCAACGCA-AAAA-GTTACAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATG
*
17827506 AAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
513 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * *
17827571 CACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTGTCGATCCATGGCTTGCGTATCCC
578 CACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* *
17827636 GTCTCTCTGGCCGGCGTAATGCCCGCTCGCCCGCCCGCCCGCACGTTTCGTCGGTTGGCTTAGGC
643 GTCTCTCTGGCCGGCGTAGTGCCCGCTCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * * * ** *
17827701 ATACGGAGTTCATTCCCAGTCTAAGATTGGACTGCACCGAGGGTTG-CAGCAGCAGGATCGGTAA
708 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGTGA-CAGCAGGATCGACAG
* * * * * *
17827765 CACGCAAAGGGGGACCCGGCC-ACTCCTCGGCTTGCGCATCCCGCCCCTTTAGCCGGTTGAGCGC
772 CACGCAGAGGGGGACCCGACCGA-TCCTCGGCTTTCGCAT-CTGCCCCTCTGGCCGGTTGAGCGC
* * *
17827829 CCGCACATTCGTTTCGTGGGTTGACATAGGCATACGGAGTTCATTCCCAGTCTAA
835 CCGCACATTCGTTTCGT-GGTTCACTTAGGCATACGGAGTTCATTCCTAGTCTAA
* * * * * * ** * * ** *
17827884 G-AT-CGGATAGGACCGAGGGTT-GC-AGC-AGCACATGCTGAGCTCGG-GCTTGTGCTGGTGCT
1 GCATACGG--A-GTCC-A---TTCCCAATCTA--AGAT-CAGA-C-CGGACCAAGGGTTGCAGCA
** * ** * ** * ** *** * *
17827943 GCATTTTTCTTCATAAGGGCACCATCGTTGGACCATCGTCGA--AGAACCTGACCGGAGCATCAC
54 GCA-CATGCTGGAT-TGGGCA-TGT-GCTGGTGC--CG-C-ATTTTTA-CTG-TCGGAGCACCAC
* * *
17828006 CGGAGCATCACCGGAGAACCTGACCGATGGCATTAGGGTTCCGGCGATCGGCGGGGCTGGGGGGG
109 CGGAGCATCACCGGAGAACCTGACCGACGGCATTAGGGTTCCGACGAT---C---G--GAGGGGG
* **
17828071 GTGTGCGGACATGATGTGCGATGGGTGCTGCCACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
166 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
17828136 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
231 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
*
17828201 CATTAAAGTGTC-GAAAATGGGGACACTTTTTTCAAATGGTGACAAAATCTTGTACACTTCGAGT
296 CATTAAAGTGTCTG-AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* *
17828265 TTTTAGCTGACTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCATGTTTGGGGC
360 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGC
* * * *
17828330 CAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACTGCAAAATGTTTCAAAAATCGTGAAAA
425 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCC-CAAC-GCAAAAAGTTACAAAAATCGTGAAAA
*
17828395 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
488 ATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * * *
17828460 AGAAGCCAAAAAAAAGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCT
553 ACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * *
17828525 TATCGATCCACGGCTTGTGCTTCCCATCTCTTTGGCCGGCGTA------G-T-----GCCCGCCC
618 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCTCGCCCGCCCGCCC
* * *
17828578 GCTCGTTTCGTCGGTTGGCTTAGGCATTCAGAGTTCATTCCTAGTCTAAGATCGGACCGGACCAA
683 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAA
17828643 GGGTT
748 GGGTT
17828648 ACGGCAGCAC
Statistics
Matches: 2205, Mismatches: 275, Indels: 142
0.84 0.10 0.05
Matches are distributed among these distances:
889 8 0.00
890 350 0.16
891 373 0.17
892 7 0.00
893 35 0.02
894 13 0.01
895 207 0.09
896 279 0.13
897 179 0.08
898 10 0.00
899 4 0.00
900 6 0.00
901 16 0.01
902 111 0.05
903 2 0.00
904 122 0.06
905 2 0.00
906 5 0.00
907 11 0.00
908 2 0.00
912 1 0.00
913 278 0.13
914 179 0.08
915 3 0.00
916 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (888 bp):
GCATACGGAGTCCATTCCCAATCTAAGATCAGACCGGACCAAGGGTTGCAGCAGCACATGCTGGA
TTGGGCATGTGCTGGTGCCGCATTTTTACTGTCGGAGCACCACCGGAGCATCACCGGAGAACCTG
ACCGACGGCATTAGGGTTCCGACGATCGGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
AAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
CCCAACGCAAAAAGTTACAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCA
CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAA
TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
GGCCGGCGTAGTGCCCGCTCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
TTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGTGACAGCAGGATCGACAGCACGCAGAG
GGGGACCCGACCGATCCTCGGCTTTCGCATCTGCCCCTCTGGCCGGTTGAGCGCCCGCACATTCG
TTTCGTGGTTCACTTAGGCATACGGAGTTCATTCCTAGTCTAA
Found at i:17828009 original size:11 final size:11
Alignment explanation
Indices: 17827993--17828021 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
17827983 GAAGAACCTG
17827993 ACCGGAGCATC
1 ACCGGAGCATC
17828004 ACCGGAGCATC
1 ACCGGAGCATC
17828015 ACCGGAG
1 ACCGGAG
17828022 AACCTGACCG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.28, C:0.34, G:0.31, T:0.07
Consensus pattern (11 bp):
ACCGGAGCATC
Found at i:17830394 original size:26 final size:26
Alignment explanation
Indices: 17830358--17830410 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17830348 GTTCACTTAG
17830358 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17830384 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17830410 G
1 G
17830411 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17830519 original size:185 final size:185
Alignment explanation
Indices: 17830199--17830599 Score: 595
Period size: 185 Copynumber: 2.2 Consensus size: 185
17830189 ATTGGCTTAG
* * * *
17830199 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAGGATCCGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGACAGCAAGATCAGCA
* * * * *
17830264 GCACGCAGAGGGGGACCCGACCAATCCCCGGTTTGCGTATCTCGCCCCTCTGGATGGCTGAGCGC
66 GCACGCAAAGGGGGACCCGACCAATCCCCGGCTTGCGCATCTCGCCCCTCTGGACGGCTGAGCAC
* *
17830329 CCGCACGCTCGTTTTGTGGGTTCACTTAGGCATACGGAGTTCATTCCCAGTCTAA
131 CCGCACGCTCGTTTCGTGGGTTCACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* *
17830384 GCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTGCGACAGCAAGATCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGACAGCAAGATCAGCA
* * * * * * * *
17830449 GCACGCAAAGGGGGACTCGATCGATCCCCGGCTTGTGCATCTTGGCTCTCTGGCCGGCTGAGCAC
66 GCACGCAAAGGGGGACCCGACCAATCCCCGGCTTGCGCATCTCGCCCCTCTGGACGGCTGAGCAC
*
17830514 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
131 CCGCACGCTCGTTTCGTGGGTTCACTTAGGCATACAGAGTTCATTCCCAGTCTAA
*
17830569 GCATACGGAGTTCATTCTCAGTCTAAGATCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCA
17830600 AGCCAGACGA
Statistics
Matches: 192, Mismatches: 24, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
185 192 1.00
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.23
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGACAGCAAGATCAGCA
GCACGCAAAGGGGGACCCGACCAATCCCCGGCTTGCGCATCTCGCCCCTCTGGACGGCTGAGCAC
CCGCACGCTCGTTTCGTGGGTTCACTTAGGCATACAGAGTTCATTCCCAGTCTAA
Found at i:17830579 original size:26 final size:26
Alignment explanation
Indices: 17830543--17830595 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17830533 GTTGACTTAG
17830543 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
17830569 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17830595 G
1 G
17830596 ATCAAGCCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17831200 original size:26 final size:26
Alignment explanation
Indices: 17831164--17831242 Score: 158
Period size: 26 Copynumber: 3.0 Consensus size: 26
17831154 GTTCGCTTAG
17831164 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17831190 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17831216 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17831242 G
1 G
17831243 ATCAGACTAG
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17831328 original size:14 final size:14
Alignment explanation
Indices: 17831309--17831336 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
17831299 CCGCATTTTT
17831309 CATCGTCGGGGCAC
1 CATCGTCGGGGCAC
17831323 CATCGTCGGGGCAC
1 CATCGTCGGGGCAC
17831337 TTTTTTTGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.36, G:0.36, T:0.14
Consensus pattern (14 bp):
CATCGTCGGGGCAC
Found at i:17833697 original size:26 final size:26
Alignment explanation
Indices: 17833668--17833720 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17833658 GTTGACTTAG
*
17833668 GCATACGGCGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17833694 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17833720 G
1 G
17833721 ATCAGACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17834147 original size:893 final size:896
Alignment explanation
Indices: 17831330--17857781 Score: 14501
Period size: 899 Copynumber: 29.1 Consensus size: 896
17831320 CACCATCGTC
**
17831330 GGGG-CACTTTTTTTGAATGGTCACAAAATC-T-TACACTTCGAGTTTTTAGCTGAATTTTTTTG
1 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * * *
17831392 TGCATGCTAACAAAAATACAAGTATCACGTCTACCAAGTTTGTGGTCAAAACTCCTTTCGAAAAA
66 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* * *
17831457 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTT
131 ATTTTAAAAAATCCTGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
17831522 GCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCA
196 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
17831587 TTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCAATGGCTTACG
261 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
17831652 CATCCCGTCTCTTTGGTCGGCGTAGTGCCCGCCCGCACGCTCGTTTCATCAGTTGGCTTAGGCAT
326 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* ** * ** * **
17831717 ACAGAGTTCATTCCCAGTCTAAGATTGGATC-AGACCGAGGGTTGCGGTAGCAGGATCGGTAGCA
391 ACGGAGTTCATTCCCAGTCTAAGATCAGATCGA-ACCGAGGGTTGTGACAGTAGGATCGACAGCA
*
17831781 TGCAGAGGGGGACCC-AGCCAATCCCCGGCTTGCGCATCCCAG-CCCTCTGGTCGACTGAGCGCC
455 TGCAGAGGGGGACCCGA-CCAATCCCCGGCTTGCGCATCCC-GCCCCTCTGGCCGACTGAGCGCC
* * * *
17831844 TGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAACCTACAGAGT
518 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* * *
17831909 TCATTCCCAGTCTAACATCAAACCAGACCGAGGGTTAG-GGCAGCACATGCTGGGCTCGGGCATG
583 TCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT-GCGACAGCACATGCTGGGCTCGGGCATG
* ** * *
17831973 TGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATTGCCGAAGAACCTGACCGA
647 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGA
17832038 CGGCATTGGGGTTCC-AGCGATCGGGGGGGCCGGGAGGGGGGTGTGCGCACATGATGTGCGATGG
712 CGGCATTGGGGTTCCGA-CGATCGGGGGGGCC--GA-GGGGGTGTGCGCACATGATGTGCGATGG
*
17832102 GTACTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
773 GTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * *
17832167 TTAAAGAGCATTTGAGATTTTACATGTTTGCTGCCAATAGCCATTAAAGTGTCTAAAAT
838 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
17832226 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
1 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
** * * * **
17832291 TGTGTGCCAACAAAAATACAAGGATCACCTCTACC-AGTTTGGGGCCAAAAATCCTTCTGAAAAA
66 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* * ** * * *
17832355 ATTTTAAAAAAATTCTGAAACACAAAAATTTTCAAAAATCGTGGAAAATAGAAAACGAGTCGTCT
131 ATTTT-AAAAAATCCTGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * *
17832420 TACCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAACAATGGC
195 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
***
17832485 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
260 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
17832550 GCATCTCGTCTCTCTGGCCGGAGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
325 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * ** **
17832615 TACGAAGTACATTCCCAGTCTAAGATCAGATAGGACCGAGGGTTGTGGTAGTAGGATCGGTAGCA
390 TACGGAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTTGTGACAGTAGGATCGACAGCA
* * ** ** *
17832680 CGTAGAGGCAGACCCGACTGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCG
455 TGCAGAGGGGGACCCGACCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCG
* * * * *
17832745 CACGCTCGTTTCATGGGTTAACTTAGGCATATGGAGTTCATTCCCAATCTAAGCATACAGAGTTC
520 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* * * *
17832810 ATTTCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCTTGTGC
585 ATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGC
* * * * * *
17832875 TGGTGTCGGATTTTTCTTTGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACAG
650 TGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGG
* * * * *
17832940 CATTAGGGTTCTGGCGATCGGGGGGGCTGCGGGGGGGTGTGTGCACATGATGTGCGATGGGTGCT
715 CATTGGGGTTCCGACGATCGGGGGGGC--CGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
*
17833005 -GATACTTGGCCCTTATATTGGCCCCGTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
778 AG-TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
17833069 AGAGCATTTGAGATTTTACATGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
842 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
17833124 GGGGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
1 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * **
17833189 TGCATGCCAAAAAAAATAAAAGGATCATGTCTACCAGGGTTGGGATCAAAACTCCTTCCAAAAAA
66 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
*
17833254 ATTTTAAAAAATCCTGAACCGTAAAAAGTTTGGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
131 ATTTTAAAAAATCCTGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
17833319 GCCTTGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCA
196 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
17833384 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCG
261 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
17833449 CATCTCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCT-GTTTCGTCGGTTGGCTTAGGCTT
326 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * *
17833513 ACGGAGTTCATTCCTAGTCTATGATCAGATCGAACTGAGGGCTGTGACAATAGGATCGACAGCAT
391 ACGGAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTTGTGACAGTAGGATCGACAGCAT
* * * * * * *
17833578 GCGGAGGGGGACCTGGCCAATTCCCGGCTAT-CGCATTCCGCCCCTCTGGCCG-GTCGAGTGCCC
456 GCAGAGGGGGACCCGACCAATCCCCGGCT-TGCGCATCCCGCCCCTCTGGCCGACT-GAGCGCCC
* * *
17833641 GCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGCGTTCATTCCCAGTCTAAGCATATGGAGTT
519 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * *
17833706 CATTCCCAGTCTAAGATCAGACCAAACCGCA-GGATGCAACAGCACATGCTGGGCTCGGGCATGT
584 CATTCCCAGTCTAAGATCAGACCAGACCG-AGGGTTGCGACAGCACATGCTGGGCTCGGGCATGT
* * * * *
17833770 GCTGGTACCGCA-TTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCAGAGAACCTAACTGAC
648 GCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGAC
* * * *
17833834 GGCATTGAGGTTCCGATGATCGGGGGGGCCGAGGGGGTGTGCGGACATGATGTGCGATGGGTACT
713 GGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
*
17833899 AGTACTTGGCCCTCATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
778 AGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
*
17833963 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAAT
843 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
17834017 GGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACATCGAGTTTTTAGCTAAATTTTTTTT
1 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
*
17834082 TGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
66 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* * ** *
17834147 ATTTTAAAAAAT-CTAGAACCGTAAAAAGTTTCGAAGATCGTGAATAATAGAAAATAAGTCGTCA
131 ATTTTAAAAAATCCT-GAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
17834211 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGTCATAAAAATGGC
195 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
17834276 ATTGGCATGCAAAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
260 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
17834341 TCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGTCTGCCCACCCGCTCGTTTTGTCGGTTGG
325 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CC--C-G----CCCGCTCGTTTCGTCGGTTGG
* * * * * ** * * *
17834406 CTTAGGCGTACAGAGTTGATTCCCAGTATAACATTGGATCGGACCGAGGGTTG-CAGCAGCAGGA
382 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTTGTGA-CAGTAGGA
* * * * *
17834470 TCGACAGCATGCAGAGGGGGACCCGACCGATCCTCGGCTTGCACATCTCGCCCCTCTGGCCGACA
446 TCGACAGCATGCAGAGGGGGACCCGACCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACT
* * *
17834535 GAGCGCCCGCACGCTCGTTTCCTGGGTTGACTTAGGCATACGGAGATCATTCCCAGTCTAATCAT
511 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* * * *
17834600 ACGGAGTTCATTCCCAGTCTAAGAACAAACCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCG
576 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCG
* * * *
17834665 GGCATGTGCTGGT-CTCACATTTTTCTTCGTCGAGGTACCATCGTCGGAGCATCGTCGGAGAACC
641 GGCATGTGCTGGTGC-CGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACC
** * * * * *
17834729 TGACCGTTGGTATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGGTTGTGTGCGCATGATGTGCG
705 TGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGG-TGTGCGCACATGATGTGCG
* * * *
17834793 TTGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTTGACAACTCACAC
769 ATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
17834858 CCCCTTAAAGAGCATTTGACATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAAT
834 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
17834921 GCGGACACTTTTTTCAAATAGTCACAAAATCTTGTACACTTCAATTTTTTAGCTGAATTGTTTTT
1 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTT
* * * *
17834986 TTGCATGCCAACAAAAAA-ACAAGGATCATGTCTACTACGTTTGGGGCCAAAACTCCTTCCAAAA
65 GTGCATGCCAA-AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
* * * * *
17835050 AAATTTTAAAAAATCCCGAACC-TCAAAAAGTATT-TAAAATCTTGAAAAATAGAAAACGGGTCA
129 AAATTTTAAAAAATCCTGAACCGT-AAAAAGT-TTCGAAAATCGTGAAAAATAGAAAACGAGTCG
* *
17835113 TCTTGCCATCAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
192 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * *
17835178 GGCATTGGCAAGCAAAAATATGAAGATGTGCCTAAACCCACCGT-TCACCCTATCGACCCACGGC
257 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC-TACCACCCTATCGATCCACGGC
* *
17835242 -TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGGTTCGTTTTCGGTCGGTTGGC
321 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC-GCTCG-TTTC-GTCGGTTGGC
* * * ** * **
17835306 TTAGGAATACGGAGTTCATTGCCCAATGTAAGATTGGACCGGAATTGAGGGTTGTG-CAGTAGGA
383 TTAGGCATACGGAGTTCATT-CCCAGTCTAAGATCAGATC-GAACCGAGGGTTGTGACAGTAGGA
* * * * * * * *
17835370 TCG-CAGCATGTAGAGGGGGACCTGAACTGAATCCCCGGCTTGCGTAACCCACCCCGTTTGGCTG
446 TCGACAGCATGCAGAGGGGGACCCG-AC-CAATCCCCGGCTTGCGCATCCCGCCCC-TCTGGCCG
**
17835434 ACTGAGCGGGCCCCGCACGCTCGTTTCGTGGGTTGACTTTAGGCATACGGATGTTCATTCCTGGT
508 ACTGAGC--G-CCCGCACGCTCGTTTCGTGGGTTGAC-TTAGGCATACGGA-GTTCATTCCCAGT
* * *
17835499 CTAAGCATACGGAG-TCGTTCCCAGTTCTAAGATCGGATCAGACCGAGGGTTGCGACAGCACATG
568 CTAAGCATACGGAGTTCATTCCCAG-TCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATG
* * * *
17835563 CTGGGCACGCGGCCATGTGCTGGTGCAGCATTTTTCTTCGCCTGGGCCAACCATCGTCGGAGCAT
632 CTGGGCTCG-GG-CATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGC-ACCATCGTCGGAGCAT
* * * * * *
17835628 CGCCGGAGAACCTGATCGACCTGGTAATGGGTGTATCGGA-GATC-GGGGAGCCG-GAGGGTGTG
693 CGCCGGAGAACCTGACCGA-C-GGCATTGGG-GT-TCCGACGATCGGGGGGGCCGAGGGGGTGTG
* * *
17835690 C-CATACATGATGTGCCGATGGGTGCTTGGTACTTGTCCCTTATATTGGCCCCCTATCCTTCATC
754 CGC--ACATGATGTG-CGATGGGTGC-TAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
17835754 AAA-CT-GAGAACTTCAC-CCCCGCTTTAAAGAGCATTTGAAGATTTTTACAGGTTTGCCTGCCT
815 AAACCTCGAGAAC-TCACACCCC-C-TTAAAGAGCATTTG-AGA-TTTTACAGGTTTG-CTGCC-
*
17835816 AGTAGCAATTAAGAGTGTCTGAAAT
873 AGTAGCCATTAA-AGTGTCTGAAAT
* * * *
17835841 GGGGACACTTTTTTCAAATGCTCACAAAATTCTTGTACACTTTGAGTTTTTAGCTAAAGTTTTTT
1 GGGGACACTTTTTTCAAATGGTCACAAAA-TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * **
17835906 ATGCATGCTAAGAAAAATACAAGGATCATGTCTACCAAGTTTGGGG-CAAAACTCCTTCTGAAAA
65 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
* ** * * *
17835970 AATTTTAAAAAATCTTGAACCACAAAAAGTTTTGAAAATCGTAAAAAATAGAAAACGAGTTGTCT
130 AATTTTAAAAAATCCTGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
17836035 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
195 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** *
17836100 ATTGGCACACA-ATAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTA
260 ATTGGCATGCAGA-AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
17836164 CACACCCCGTGTCTCTGGCCGGCGTAGTGCTCGCCTGCCTGCCCGCCCATTCGTTTCGTCGGTTG
324 CGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-CC-GCCCGCCCG--C--TCGTTTCGTCGGTTG
* * ** * *
17836229 GCTTAGGCATACGGAGTTCATTCCCTAGT-TAAGATCAGGACCAGGA-CGAGGGTTACG-CGGCA
381 GCTTAGGCATACGGAGTTCATTCCC-AGTCTAAGATCA-GATC-GAACCGAGGGTTGTGACAGTA
** ** * * *
17836291 GGATCGGTAGCACACAGAGGGGGA-CCGA-CAGAT-CCCGGCTTACGCATCCC-ACCCTCTTGCC
443 GGATCGACAGCATGCAGAGGGGGACCCGACCA-ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
*
17836352 -AGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGG-ATAC--AG---------AG--T-
507 GA-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
17836401 ----T-C--A----ATTCCCAGTCTAAGATCAGACCA-ACCGA-GGTGTG-G--A-CACATGCTG
571 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGT-TGCGACAGCACATGCTG
* * * * * * * * * *
17836449 GGCTC-GGCATGTGTTGGTGTCACA-TTTT-TTC--AGGGGCATTCATCGCCAGAGTATCGTCAG
635 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA-CCATCGTCGGAGCATCGCCGG
* *
17836509 AGAACCTGACCGACGGCATT-GGGTTCCTG-CGATC---GGAGCCGAGGGGTGTGTGCGCATTGA
699 AGAACCTGACCGACGGCATTGGGGTTCC-GACGATCGGGGGGGCCGAGGGG-GTGTGCGCA--CA
* * * ** ** *** *** *
17836569 TGATAATGTC-ATTGGCATG-TAGGAAAATGAAG-GATGTGCCTAAACCCACCTA-CCACCCTAT
760 TGAT-GTG-CGA-TGG-GTGCTA-GTACTTG--GCCCT-TATATTGGCCC-CCTATCC-CTC-AT
* * * * *** * ** * *
17836630 C-AATCT-GTG-GCTTACGCATCCCGTCTCTCTGGTCGGGCAGGTCGCCCGCCGCCCGCTCGTTT
814 CAAACCTCGAGAAC-T-CACA-CCC--C-CT-T-AAAGAGCA--T------TTG--AGAT--TTT
* * * ** *
17836692 -C--GTTGGTGGCTTAGGCATACGGAGTTCATTCCCA--GTCT-AAGCT
859 ACAGGTT--T-GC-T--GC-CA-GTAG-CCATT-AAAGTGTCTGAA-AT
* * ****** *** ** **** * **** * *
17836735 CGGGCCGGACCGAGGGC-TGCGGT-AGCAGGATCGACAACAC-GCAGAG-GGGGACCTG-ATCGA
1 GGGGAC--ACTTTTTTCAAATGGTCA-CAAAATCTTGTACACTTC-GAGTTTTTAGCTGAAT--T
** * ******* * * * * * * *
17836795 TCCTTG-GCTTGCGCATCCCGCCCTTCTAGCCGATTTAGCGCCCGCACGCTCATTTCATGGGTTG
60 TTTTTGTGCATGC-CA-AAAAAAATACAAG--GA-TCA-CG-TC-TAC-C-AAGTT--TGGG--G
** * * *** *** ** ** * ** ** *
17836859 ACTTAGGCATACGGAGTTCATTCCCTATCTAAGCATACGGAGTTCAT-TTCCAGT-TTAAG-ATC
111 -C-----CA-A---AACTCCTT-CCAAAAAAATTTTA-AAAAATCCTGAACC-GTAAAAAGTTTC
* * * * ** * **
17836921 GAACCAGATCGAGGGTTACAGTAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCAT-ATTTTTC
163 GAA--A-ATC--GTG-AAAAATAG-A-AAACGA-G-T----C--GT-CT--TGCCATGA---AAC
* * * * ** * * * * * *** * *
17836985 TTCATCGGGCCA-CCATCACCGGAGCATCGT-CG----GAGAA-CC-TGACCGACGGCATTAGGG
206 TTCA-CGTG-AAGGC-TTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAAATGGCATT-GGC
* * * ** * * * ** *** * * **** * * * ***
17837042 TTTC-GACGATCGGGGGAGCTGGGGGGTGTGCGCACATGA-TGTGCGATGGTTGCCAATACTTG-
266 ATGCAGA-AAT--ATGAAGAT-GTGCCTAAACCCACCT-ACCACCCTATCGAT-CCACGGCTTGC
* * * ** * * *** ** * *** *
17837104 G---CCCTTATAT-TGGCCCTC-TA-T-CCCTCATCAAAC-CTCAAGAACTC-ACACCT-CCTTA
325 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC-CCGCCCGCTC--G-TTTCGTCGGTTGGCTT-
** * * ** * * **
17837159 AAGAGCATTTGAGATTTTCAGGTTTGCGGCCAGTAGCCATTA-AAGTGTCTGAAATG-GGGACAC
385 -AG-GCATACG-GA-GTTCA---TT-C--CCAGT--CTAAGATCAG-ATC-GAACCGAGGG----
* ** * * * **** * * ****
17837222 TTTTTTCA-AATGG-TC-ACAAAATCTTGTACACTTCGAGTTTTTAGCTGA--ATATTTTTGTGC
432 TTGTGACAGTA-GGATCGAC---AGCATG--CA----GAG-GGGGACCCGACCA-ATCCCCG-GC
* * *** *** * * * ** * ** * *
17837282 ATGCCAACAAAAATAAAAGGATCATGTCT-ACCAAGTTTGCAG-CC-AAAACTCCTTTCGAAAAA
484 TTG-C-GC----AT--CCCG--CCCCTCTGGCCGACTGAGC-GCCCGCACGCTCGTTTCG----T
*** * *** ** * * * ** **** * *
17837344 ATTTTCAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTAAAAAATAGAAAAC-GAGTCGTC-
534 GGGTTGACTTA-GGCATA-CG----GAG-TTC---ATTCCCAGTCTA-AGCATACGGAGT--TCA
** * * * ** * * ** *
17837407 TAGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA-TGA-ATTTACAAGCCATAAAAAT
586 TTCCCA-G-----T--C-T-AA-G-ATCA--GACCA--G-ACCGAGGGTTGC--GACA-GCACAT
* * * ** * ** * ****
17837470 GGCATTGGCACACAGAAATATGAAGATGTGCCAAAACCCACGTACCACCCTATCGATCCACGGCT
631 -GC--TGG-GCTCGGGCATGTGCTG--GTG-C----CGCA--T--TTTTCT-TCG-T---CGG--
* * * * * ** * * * *
17837535 TGCGCATCCCGTCTCTCTG-GC--CGGCGTAGTGCCCGCCCGCTCGCCCGCTCATTTTGTCGGTT
674 -G-GCA--CCATC-GTCGGAGCATCGCCGGAGAACCTGACCG-ACG---G--CA--TTG-GGGTT
** * **** * ***** ** * * * **
17837597 GGCTTAGGCATACGGAATGCATTCCCAGTCTAAGAT-CAAACCA-GACTGAGGGTTGCAGCAGC-
725 --CCGACG-AT-CGG---GGGGGCCGAGGGGGTG-TGCGCA-CATGA-TGTGCGATG--GGTGCT
* * * * ** * ** ** ** * * ** * * *
17837659 AGGATCGGTAGCACGCAGAGGGGGACCC-GGCCGATCCTC--GGCTTGCGCA-TC-C-CGCCCCT
778 AGTA-C-TTGGCCCTTATATTGGCCCCCTATCC-CTCATCAAACCTCGAGAACTCACAC-CCCCT
* *** * * * * * * * **
17837718 CTAGCCAGTTGAGCACCCGTACGCTCGATT-CGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
839 -TA---A--AGAGCATTTG-A-GAT--TTTAC-AGGTTTG-C-T--GC-CA-GTAG-CCATT-AA
17837782 A--GTCT-AAGAT
885 AGTGTCTGAA-AT
* *** ** * * * * * * ** *
17837792 -CGGAC-C---AGACCGAGGGTTGCAGCAGCACATGCTTCGGT-CGGGCAT-GTGCTGGT-GCCG
1 GGGGACACTTTTTTCAAATGG-T-CA-CA--AAAT-CTT--GTAC--ACTTCGAGTTTTTAGCTG
* ** ** ** ** * * * * *
17837849 TATTTTTTT-TCGTCGGGCC-ACCATCAGCCGGAGCATCACCGGAGAACCTGACCGATGGCATTA
56 AATTTTTTTGT-G-CATGCCAAAAAAAATAC-AAGGATCA-C---G--TCT-ACC-A-AG--TTT
* *** *** ******** * **** * * ** ** * *
17837912 GGGTTCCGGCGA-TCGACGGGGCTGGGGGGGTGT-GCGGA-CATG-A-TGTGCGATGGGTGCTGA
107 GGG-GCC-AAAACTC--C-TTCCAAAAAAATTTTAAAAAATCCTGAACCGT-AAAAAGTTTC-GA
** * ** * * * **** * * * * * * *
17837972 TACTTGGCTCTTATATTGGCCCCCTA-TCGCTCAT-CAAACCTCGAGAACTCACACCCCCTTAAA
165 -AAATCG-T-GAAAAATAGAAAACGAGTCG-TCTTGC---CAT-GA-AACT-TCA---CGTGAAG
*** * * * * ** * * * * * ** **
17838035 TAGTATA-TGA-GATTTTACAGGTTTGCTGCCAGTATCCATTAAAGTGTC--TGAAATGGGGACA
217 GCTTA-AGGGACCATTGTA-TGAATT--T-ACA--AGCCATAAAAATGGCATTGGCATGCAGA-A
* * * * *** * * ** *
17838096 CTTTTTTCAA-ATG-GACAC-AAA---ATCTTGTACACT-TTGAGTTTTTAGCTGGTTTTTTTTG
274 ---ATATGAAGATGTG-C-CTAAACCCACCTACCACCCTATCGA---TCCA-C-GG-----CTTG
* ******* * * * * *** *** * * *
17838154 TGCATGCCAACAAAAAGAAATGGATC-ACGT-CTACCCAGTTTGGAGGCAAAAATCCTTCCGAAA
324 CGCAT-CC--C--GTCTCTCTGG-CCGGCGTAGTGCCC-GCCCGCCCGC-----TCGTTTCG--T
*** *** * * ** **** * * * **
17838217 AAATT---TTAAAAAATCCTGA-ACCATAAAAAGTTTCGAAAATCATGAAAAATAGAAAATGAGT
375 CGGTTGGCTT-AGGCATACGGAGTTCATTCCCAG--TCTAAGATCA-G----ATCG-AACCGAG-
* * * *** * * ** * ** * ** *
17838278 CGTCT-TGCCATGAAACTTC-ACATGAAGGCTTA-AGGG-CCCATTGTATGAATTTACAAGCCAT
430 GGT-TGTGACA-GTAGGATCGACA-GCATGCAGAGGGGGACCC---G-ACCAA--TCCCCGGC-T
* *** * * ** ** * * * *
17838339 AAAAATG-GCATTGGCACGCAGAAATATTAAGATGTACCCAAACCCACCTACCACCCTATCGATC
485 -----TGCGCA-T--CCCGC--CCCT-CT-GGCCG-A-CTGAGCGC-CC--GCACGC--TCG-T-
** * * * * *** * * * * *
17838403 CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGGGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAG
529 TTC-G--TG-G-GT--TGACT-T-AGGCATAC-GG--AG--T--TC-ATTC-CCAG-T--C-TAA
* **
17838468 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
572 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
** * * * * *
17838533 CTTAGGTATGTGCTGGTGCTGTATTTTTCTTCG-CTAGGGCACCATCGTCAGAGCATCGCCGGAG
637 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGCCGGAG
* **
17838597 AACCTGACCGACGGCGTTGGGGTTCCGACGATCAAGGGGGCCGAGGGGGGTGTGCGCACATGATG
701 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGA-GGGGGTGTGCGCACATGATG
* *
17838662 TGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
765 TGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
17838727 ACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAA
830 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
17838792 AT
895 AT
* * * * * *
17838794 TGGGACAGTTTTTTCAAATGGTCAAAAAATCTTGAACCCTTCGAGTTTTTACCTGAATTTTTTTG
1 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
17838859 TGCATGCCAACAAAAATACAAGGATCATGTCTAACAAGTTTGGGGCCAAAACTACTTCCAAAAAA
66 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* * *
17838924 ATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCTTGAAAAATAGAAAACGAGTCGTCTT
131 ATTTTAAAAAATCCTGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
17838989 GCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
196 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
17839054 TTGACATGCAGAAATATGAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACGACTTGCG
261 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
*
17839119 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTCCGCCCGGTCGTTTCGTCGGTTGGC
326 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG--C--CCG--C--TCGTTTCGTCGGTTGGC
* ** * * * * * * * * * *
17839184 TTTGAAATACAGAGTTCATTCCTAGTCGAAGATCGGA-CTGGACTGAGTGTTGCGGCAGCAGGAT
383 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATC-GAACCGAGGGTTGTGACAGTAGGAT
* * * * * *
17839248 CAGTAGCA-CAT--AGAGGCGGACTCGACCGATCCCCGACTTGCACATCCCGCCCCTTTGGCCGA
447 C-G-A-CAGCATGCAGAGGGGGACCCGACCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGA
* * * ** * * *
17839310 CTAAACGCCCGCACGCTCATTTTATGGGTTGACTTAGTCATATGGAGTTCATTCTCAGTCTAAGC
509 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * * * * *
17839375 ATACGGAGTTCATTCCCAGACTAAGAT-TGCACCGGATCAAGGGTTGCGGCAGCACATGCTGGGC
574 ATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGCGACAGCACATGCTGGGC
* * *
17839439 TCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCTTCGGAGCATCGCCAGAGAA
638 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAA
* ** * * * * *
17839504 CCTGATCGACGGCATTGGGGTTTAGACAATCGGGGGGGCC-AGGGGGTATGCTCACATGATTTGG
703 CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGC
* *
17839568 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCCAACCTCGAGAACTCACA
768 GATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
17839633 CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
833 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
17839697 GTGAACAC--TTTTCAAACGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTG
1 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
17839760 TGCATACCAACAAAAATGCAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
66 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
** * ** *
17839825 ATTTTAAAAAAT-CTCGAAAAGCAAAAAGTTTAAAAAATAGTGAAAAATAGAAAACGAGTCGTCT
131 ATTTTAAAAAATCCT-GAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
17839889 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGC
195 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
17839954 ATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTGGC
260 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
17840019 GCATCCCG------T---C--C--A---CCCGCCTGCTCGCCCGTTTCATCAGTTGGCTTAGGCA
325 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * *
17840068 TATGGAGTTCATTCCCAGTCGAAGATCAGA-CCAGACCGAGGG-T-T-ACAGTAGCAAGATC-AG
390 TACGGAGTTCATTCCCAGTCTAAGATCAGATCGA-ACCGAGGGTTGTGACAGTAG---GATCGA-
* * * * * *
17840128 CAGTACGTAGAGGGGGACCCGACCTATCCCCGGCTTGCGCATCCCACCCCTCTGGCCAACTGAGC
450 CAGCATGCAGAGGGGGACCCGACCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGC
* * * * *
17840193 ACCCGCACGCTCGTTTCGTTGGTTGAATTAGGCATACAGAATTCATTCCCAGTCTAAGCATACGG
515 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * * * ** * * *
17840258 AGTTCATTCCCAATCGAAGATCGGACCGGACTAAGGGTTACGCCAGCACATGTTGGGCTCGGGCA
580 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCA
* * * * *
17840323 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGTACCATCGCCGTG-GCATCACCGGAGAACCTAAT
645 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCG-GAGCATCGCCGGAGAACCTGAC
** * *
17840387 CGGTGGCATTGGGGTTCCGATGATC-GGGGGGCCG-GGGGGTGTGCGCACATGATGTACGATGGG
709 CGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGG
* * *** *
17840450 TGCTGGTACTTGG-CCTTATATCGGCCTTGTATCCCTCATCAAACCTCGAGAACTCACACGCCCT
774 TGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * *
17840514 TCAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAAT
839 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * * *
17840572 GAGGACACTTTTTTCAAATGGTCACAAAATATTATACACTTCGAGTTTTTGGCTAAATTTTTTT-
1 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * *
17840636 TGCATGCCAACAAAAATACAAGGATCACGTCTTCGAAGTTTGGGTCCAAAACTCCTTTCGAAAAA
66 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
** * * * *
17840701 ATTTTAAAAAAT-CTCGAATTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTGT
131 ATTTTAAAAAATCCT-GAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * *
17840765 TGCTATGAAACTTCACGTGAAAGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGGC
195 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
17840830 ATTGGCATGTAAAAATATGAAGATGTGCCTAAACCCACCTACCA-CCAAGTCGATTCACGGCTTA
260 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA-TCGATCCACGGCTTG
* *
17840894 TGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCAGCCCACCCGCTCGTTTCGTCGGTTG
324 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--C-CC-G----CCCGCTCGTTTCGTCGGTTG
* * * *
17840959 GCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGA-CCAGAGCAAGGG-T-T-ACAGTGGC
381 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGA-ACCGAGGGTTGTGACAGT---
* ** * * ** * *
17841020 AGGATTGGTAGCATGTAGAGAGGGACCCGACTGATCCCCAGCTTGCCCATCCCGCCCCTCTGGCC
442 AGGATCGACAGCATGCAGAGGGGGACCCGACCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * * *
17841085 GGCTGAGCACCCGCATGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
507 GACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * * * ** * *
17841150 GCATATGGAGTTCATTTCCAGTCTAAGATTGGACCGGATCGAGGGTTGTGGTAGGACTTGCTGGG
572 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
** * * *
17841215 CTCGGGCATGTGCTGGTGATGCATTTCTCTTCGTCGGGGCACCATCGTCGGAGTATCACCGGAGA
637 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * * * *
17841280 ACCTGATCGATGACATTAGGGTTTCGACGACCGGGGGGGCCG-GGGGGTGTACGCACATGATGTG
702 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTG
* * * *
17841344 CGATGGGTGCTGGTATTTGACCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
767 CGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
17841409 ACCCCATTAAAGAGTATTTGAGATTTT-CTAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
832 ACCCCCTTAAAGAGCATTTGAGATTTTAC-AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
17841473 T
896 T
* * *
17841474 GGGGACACTTCTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGCTGAAGTTTTTTG
1 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* ** * *
17841539 TGCATGCCAAGAAAAATGGAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAGAAA
66 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* * * * * * *
17841604 ACTTTAAAAAAT-CTCGAACCATAAATAGTTTCAAAAATCATGAAAAATAAAAAATGAGTCGTCT
131 ATTTTAAAAAATCCT-GAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * * *
17841668 TGGCATGAAGCTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAA-CATATAAAAATGG
195 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC-CATAAAAATGG
* * *
17841732 CATTGGTACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
259 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
17841797 CGCATCTCGTCTCTCTGGCCGGCGTAGTGCCCGCCCATCCGCCCGCTCGTTTCATCGGTTGGCTT
324 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--C--CCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * * * * *
17841862 AGGCATACGGAGTTCATTTCTAGTGTAAGATCAGA-CCAGAGCAAGGGTTGCGACAGCAGGATCG
385 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGA-ACCGAGGGTTGTGACAGTAGGATCG
** * * * * *
17841926 GTAGCACGCAGAGGGGGACCCGACCAATCCTCGGCTTGCCCATCCCGCCCCTCTGGCTGGCTGAG
449 ACAGCATGCAGAGGGGGACCCGACCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAG
* *
17841991 CGCCCGCATGCTCGTTTC-------G---TAGG--T--TGAG-T--TT----G-----GCATACG
514 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* ** * * *
17842030 GACTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGATAGCACATGCTGGGCTCGAGC
579 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGC
* * * * ** * * **
17842095 TTGTGCTGCTGTCTCATTTTTCTTCACCGGGGCACCATCG-CTGGAGCATCACCGAAGAATGTGA
644 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCGCCGGAGAACCTGA
* * * * *
17842159 TCGACAGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCACACATGATGTGTGATGG
708 CCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGG
* * *
17842223 GTGCTGGTACTTTGCCCTTATATTGGCCCCCTATCCCTCAACAAACCTCGAGAAGC-CACACCCC
773 GTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA-CTCACACCCC
* * * *
17842287 CTTTAAAGAGAATTTGAAACTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAAT
837 C-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * * *
17842348 GGGGACACTTTTTTTAATTGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTGAATTGTTTTA
1 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
17842413 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
66 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* * * * *
17842478 ATTTTAAAAAAT-CTCGAATCGTAAAAAGTTTCGAAAAGCGTAAAAAATAGAGAACGAGTTGTCT
131 ATTTTAAAAAATCCT-GAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
17842542 TGCCATGAAAC-T----T-----C---AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGA
195 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
17842594 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCACGACTTGC
260 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
17842659 GCATCCCGTCTCTTTGGTCGGCATAGTGCCCGCCCACCCGTCCGCCCACCCGCTCGTTTCGTCGG
325 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG------C--CCG----CCCGCTCGTTTCGTCGG
* * * * * ** *
17842724 TTGGCTTAGGCATACGGAGCTCATTCCCAGTATAAGATCGGA-CTGGATCGAGGGTTACGACAGC
378 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATC-GAACCGAGGGTTGTGACAGT
* * * * * * * * *
17842788 AGGATCGACAGCACGAAGAGGTGGACCCAACCGATCCCCAGCTTGCGCATCCTGCCCCTTTGGCT
442 AGGATCGACAGCATGCAGAGGGGGACCCGACCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * *
17842853 GGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATT--CA--C--A
507 GACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
17842912 G--T-C-----T-A-----AGGCT--G----GACC-GACCTGAGGGTTGCGGCAGCACATGCTGG
572 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACC-GAGGGTTGCGACAGCACATGCTGG
* * * * * ** * * *
17842956 GCTCGGGCATGTGCTGGTGCCACATTTCTCTTTGTTGGGGTACCATCACCGGAGCATCGTCAGAA
636 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAG
* * * * * *
17843021 AACCTGACC-AGCGACATTGAGGTTTCGACGATCAGGAGGG--AAGGGGGTGTGCGCACATGATG
701 AACCTGACCGA-CGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATG
* * *
17843083 TGCTATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
765 TGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
17843148 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGCGTCTGAA
830 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
17843213 AT
895 AT
* * * *
17843215 GGGGACACTTCTTTCAAATGGTCACAAAATCTTGTACACTTCAATTTTTTAGCTGAATTGTTTTG
1 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
17843280 TGCATGCCAACAAAAATACAAGGATCATGTCAACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
66 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* * ** * * * *
17843345 ATTTCAAAATATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAATGAGTCGTCTT
131 ATTTTAAAAAATCCTGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
17843410 GGCATGAAGCTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
196 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * ** * ** *
17843475 TTGGCAGGAAGAAATATGAAGATGCACCTAAACCAACCTACCACCCTATTAATCCATGGCTTGCG
261 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
17843540 CATCCTGTCTCTCTGGCCGGCGTAGTGCCCGCTCGCCCGCTCTTTTCGTCGGTTGGCTTAGGCAT
326 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * * *
17843605 ACGAAGTTCATT-CCAGTCTAAGATCAGA-CCAGACTGAGGGTTGCGGCAGTAGGATCGATAGCA
391 ACGGAGTTCATTCCCAGTCTAAGATCAGATCGA-ACCGAGGGTTGTGACAGTAGGATCGACAGCA
* * ** * * *
17843668 CGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATTTCGCCCCTCTGGCTGGCTGA-CACCCG
455 TGCAGAGGGGGACCCGACCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCG
*
17843732 CACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG-
520 --CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* *
17843792 --A-T--C-G-----GAT----------CGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGT
583 TCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGT
* ** * * *
17843836 GCTAGTGCCTTATTTTTCTTCGCTGGGGTGCA--ATCGTCGGAGCATCGCCGGAGAACCTGAGCA
648 GCTGGTGCCGCATTTTTCTTCG-TCGGG-GCACCATCGTCGGAGCATCGCCGGAGAACCTGACCG
**
17843899 AAAGCATTGGGGTTCCGACGATC-GGGGGGCC--GGGGGTGTGCGCACATGATGTGCGATGGGTG
711 ACGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * * *
17843961 CTGGTACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTCGAGAACTCACACACTCTTA
776 CTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* *
17844026 AAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTAGCCATTAAAGTGT-TGAAAT
841 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
17844081 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAACTTTTTAGCTG-ATTTTTTTG
1 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * *
17844145 TGGATGCCAACAAAAATACAAGGATCACGTCTACCAAGCTTGGGACCAAAACTCCTTTCGAAAAA
66 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* *
17844210 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG-GTCGTCTT
131 ATTTTAAAAAATCCTGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
17844274 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCA
196 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * *
17844339 TTGGCACGAAGAAATATGAAGATGTACGTAAACCC-CCTACCACCCTATCGATCCACAGCTTGCG
261 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
17844403 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCTCGCCCGCTCTTTTCGTCGGTTGGCTTAGGCAT
326 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * ** * * *
17844468 ACGAAGTTCATT-CCAGTCTAAGATCAGA-CCAGACTAAGGGTTGCGGCAGTAGGATCGATAGCA
391 ACGGAGTTCATTCCCAGTCTAAGATCAGATCGA-ACCGAGGGTTGTGACAGTAGGATCGACAGCA
* * * ** * * *
17844531 CGCAGAGGGGGACCCGACCGATCCCCGGCTTACGCATTTCGCCCCTCTGGCTGGCTGAGCACCCG
455 TGCAGAGGGGGACCCGACCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCG
* *
17844596 CACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---
520 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* *
17844654 A-T--C-G-----GAT----------CGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGC
585 ATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGC
* ** * * * *
17844700 TAGTGCCTTATTTTTCTTCGCTGGGGTGCA--ATCGTCGGAGCATCGCCGGAGAACCTGAGCAAA
650 TGGTGCCGCATTTTTCTTCG-TCGGG-GCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGAC
* *
17844763 AGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
713 GGCATTGGGGTTCCGACGATCGGGGGGGCC-GAGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* * * *
17844828 TGGTACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTCGAGAACTCACACACTCTTAA
777 TAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
17844893 AGAGCATTTGAGATTTTATAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAT
842 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
17844948 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA---C-------T---TG--------TG
1 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
17844992 -G-ATGCCAACAAAAATACAAGGATCACGTCTACCAAGCTTGGGGACCAAAACTCCTT-C-GAAA
66 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CCAAAACTCCTTCCAAAAA
* * *
17845053 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG-GTCGTC-
130 AATTTTAAAAAATCCTGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
17845116 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGC
195 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
17845181 ATTGGCACGAAGAAATATGAAGATGTACGTAAACCGACCCTACCACCCTATCGATCCACAGGCTT
260 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA-CCTACCACCCTATCGATCCAC-GGCTT
* * *
17845246 GCGCATCCCGTCTCTCTGGCCAGCGTAGTGCTCGCCCGCCCGCCGCCCGCCCTTGTTTTCTTCGG
323 GCGCATCCCGTCTCTCTGGCCGGCGTA--G-T-GCCCG--C-CCGCCCG--CTCG-TTTCGTCGG
** * * * ** *
17845311 -TGGC-TAATCATACGGAGTTTCATTCCCAGTCTAAGATCAGA-CCAGACCAAAGGTTACGGCAA
378 TTGGCTTAGGCATACGGAG-TTCATTCCCAGTCTAAGATCAGATCGA-ACCGAGGGTTGTGAC-A
* ** * * * * * *
17845373 CT-GGATCGGGTAGCACGCACGAGGGGGACCCGATCGATCCTCGGGTTACGCATCCCGCCCCTCT
440 GTAGGATC-GACAGCATGCA-GAGGGGGACCCGACCAATCCCCGGCTTGCGCATCCCGCCCCTCT
* * *
17845437 GGCCTG-CTGAGCGCCTGCACGGTCATTTCGGTGGG-TGACTTAGG-ATAACGGAGTTCATTCCC
503 GGCC-GACTGAGCGCCCGCACGCTCGTTTC-GTGGGTTGACTTAGGCAT-ACGGAGTTCATTCCC
* *
17845499 AGGTCT----A-A--G-G---------A-TC--AGATC-G----GACCGGGGGTTGTGACAGCAC
565 A-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAC
* * **
17845539 ATGCTGGGCTCGGGCATGTGCTGGTGTCGCA-TTTTCTTCGT-TGGGCACCATCACCGGAGCATC
629 ATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATC
** ** * * *
17845602 ATCGGAGAACCTGACCGGTGACATTGGGGTTCCGGCGATC-GGGGTGCCG-GGGGGTGTGCGCAC
694 GCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCAC
* * * * *
17845665 ATGATGTGCGAAGGGTGCTGGTACTTGGCGCTTGTATTGGCCCCCTATCCCTCATCAAACCTTGA
759 ATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* * *
17845730 GAACTAACAACCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTG
824 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
17845795 TCTGAAAT
889 TCTGAAAT
*
17845803 GGGGACCACTTTTTGCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
1 GGGGA-CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTT
* * *
17845868 TTTGCATGCCAAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GA
64 TGTGCATGCCAAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAA
* * *
17845932 AAAATTTTAAAAAAT-CTCGAACCGTAAAAAGTGTCAAAAATCATG-AAAATAGAAAACGAGTCG
128 AAAATTTTAAAAAATCCT-GAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCG
17845995 ---T--CATG---C-TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
192 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
17846051 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
257 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * *
17846116 TGCGCATCCAGTCTCTCTGGCCGAC-TAGTGCCCGCCCGTCCCGCCGCCGTTTC-TCGGTTGGTC
322 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CCCG-C-TCGTTTCGTCGGTTGG-C
* * * * * * * *
17846179 TTAGGCATACGTAATTCATTCCCAGTCTAAGATCAGACCGGA-CAAGGGTTGCGGACAGCAAGAT
383 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTTG-TGACAGTAGGAT
* * * * * * *
17846243 GGATAGCACGC--AGGGGGACTCCG-GCGATCCCCGGCTTGAGCATCCC-ACCC-CTGGCCGACT
447 CGACAGCATGCAGAGGGGGAC-CCGACCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACT
*
17846303 GAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
511 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* ** * * * *
17846368 ATGGAGTTCATTCCTGGTCTAAGATC-G----GA-C----G--G-GACTG---AGGGTGGGCTCA
576 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCG
* * *
17846417 GGCATGTGCTGGTGTCAGCATTTTTCTTCGTCGGGG-ACCCATCGCCCAGAGCATCGCCGGA-AG
641 GGCATGTGCTGGTG-CCGCATTTTTCTTCGTCGGGGCA-CCATCG-TCGGAGCATCGCCGGAGA-
* * * *
17846480 ACGGCTGACCGGCGG-ATTGGGGTT-CGACGATCGAGGGGGTCGGGGGGGTGCTGCGCACATGAT
702 AC--CTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTG-TGCGCACATGAT
* * *
17846543 GGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCA-CAAACCTCGAAAAC
764 -GTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * ***
17846607 TCTCACCCCTTTAAAGAGCATTTGAG-TTCTTACAGGTGCCCTAGCCAGTAGCCATTAAAGTGTC
828 TCACACCCCCTTAAAGAGCATTTGAGATT-TTACAGGTTTGCT-GCCAGTAGCCATTAAAGTGTC
17846671 TGAAATT
891 TGAAA-T
* * *
17846678 GGGGACACTTTTTTTCAAATGGTCACAAAATCTTGTACACTCCGAGTTTTGAGTTGAA-TTTTTT
1 GGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
17846742 GTGCATGCCAGCAAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAAACTCCTTCC-GA
65 GTGCATGCCA-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAACTCCTTCCAAA
* * *
17846805 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
128 AAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGT
*
17846870 CGTGCCATGAAACTTCACGTGAAGGCTTAA-GGACCATTGTATGAATTTACAAGCCATAAAAATG
193 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
17846934 GCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCC-ATCGATCCACGACAT
258 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
17846998 GCGCATCCCGTCTCTCTGGCCGGCTTAGTGCCCGTCCGCCCGCCCGCCCGTCCGCTCGTTTGTTC
323 GCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C--CCGCCCGCCCG--C-T-CG-T--TTCG-TC
* ** * *
17847063 GGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGA-CCAGACCGAGGGTTGCAGCA
376 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGA-ACCGAGGGTT---G-T
* * * * * ** * ** * **** * **
17847127 GCACATGCTGGGCTCG--GGCATGTGCTCGTGCTGCATTTTTCTTTGTCGGGGCACCATCGTTGG
436 G-ACA-G-TAGGATCGACAGCA--TGC-AGAGGGGGA-----C-CCGACCAATCCCCGGC-TT-G
* * *** * * * ** *** * **
17847190 AGAATCGCCGGAGAAC-CTGACCGA-TGGCATTGGGTTCCG-ACAATCGTGGGGCTGGG-CGGGT
487 CGCATC-CC-G-CCCCTCTGGCCGACT-G-A--GCG-CCCGCACGCTCGTTTCG-TGGGTTGACT
** * * ** ** * **** *
17847251 GT-GCGCA-AATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA-
543 -TAG-GCATACGGA-GTTC-AT---TCCCAGT-CTAAG--C--ATA-CGGAGTTC-ATTCC-CAG
* ** * ** * **** * ***
17847313 TCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA-GGTTTCCTGCCAGTA
593 TCTAAGATC-AG-AC-CAGA---CC-----GAG-GGTTGCGACAGCACATGCTGGGCT--C-G--
* * ** * **** * * * * **
17847377 GCCATTAAAGTGTCTGAAATGGAGACACTTTT-TTCAAATGGTCACAAAATC-TTGTA-CA-CTT
641 GGCA-T---GTG-CTG--GTGCCG-CATTTTTCTTCGTCGGGGCAC--CATCGTCGGAGCATCGC
* * ** * * ******* * * * ** **** * *
17847438 C-GAGTTTTTAGCTGAATTTTTTTTTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTT
696 CGGAG----AACCTG-A-------CCG-ACGGCATTGGGGTTCCGACGATCGGGGGGGCCGAG-G
* * ** * **** ** ** ** ** * *** *** *
17847502 TGG-G-GC-CAAAACTCCT-TTCGAAAAATTTTAAAAAATCCCGAACCGTA-AAAAG-TTTC-AA
747 GGGTGTGCGC-ACA-TGATGTGCGATGGGTGCT--AGTA-CTTGGCCCTTATATTGGCCCCCTAT
*** * ** * * * * * *** ** **
17847560 AAATCATGAAAAATAGAAAACGAGTCATCTA-GCCATGAAACTTCACGTGA-AGGCTTA-AGGGA
807 CCCTCATCAAACCTCGAGAAC---TCA-C-ACCCCCTTAAAGAGCATTTGAGA-TTTTACA-GG-
* * * * * * * **
17847622 CCATTGTATG-AATTTACAAGCCATAAAAATGGCATTGGCAT
864 --TTTG-CTGCCA-GT---AGCCATTAAAGTGTC--TGAAAT
** * * * * *** * *****
17847663 GCAGA-A---ATATGAAGAT-GTGC-CTAAACCCACCTACCACCCTATCGA-TCCACGGCTTGCG
1 GGGGACACTTTTTTCAA-ATGGT-CAC-AAA---ATCTTGTACACT-TCGAGTTTTTAGC-T--G
* *** * * * ***** * * ** * ** ***
17847721 CATCCCGTCTCT-C-TGGTC-GGCGTAGTGCCCGCCCG-TC-CGCCCGCTCGTTTTTTCGGTTGG
56 AAT-TTTTTTGTGCAT-GCCAAAAAAAATACAAG---GATCACGTCTAC-C-AAGTTT-GG--GG
* * *** ***** * * * * * ** *
17847781 CTTAGGCATACAGAGTT-CATTCGCAGTCT--AAGAT-CAG-ACCGGACCAAGGGTTACGACAGC
111 C-CA---AAAC-TCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGTA--AAAAGTTTCGA-A--
** * *** * *
17847841 AA--GATGGATAGCACGTAGAGGGGGACTTGAACGA-TCCCCGGCTTGCGCATCCCAC--CCCCT
166 AATCG-T-GA-A--AAATAGA-----A----AACGAGT---CGTCTTGC-CATGAAACTTCACGT
** * * * * * * * *** * **
17847901 GGCCGAC-TGAGCGCCAGTACGCTCATT-TCGTGAGTTGACTCAGGCATACGGA-GTTCATTCCC
213 -GAAGGCTTAAG-G---G-A--C-CATTGT-ATGAATTTAC-AAGCCATAAAAATG-GCATTGGC
* ** ** * *** * * ***
17847963 A-GTC-TAAGCAT-ACAGA-GT---TGATTCCCAATCTACCAAGTTTTTGTGCATGCCAACAAAA
266 ATG-CAGAAATATGA-AGATGTGCCT-AAACCC-ACCTACC-ACCCTAT-CG-AT-CC-AC-GGC
* * * * * * *** * *** ** ***** *
17848021 ATACAAGGATCACATCTAC-CAAGTTTGGGGTCAAAACTCCTTCCGAAAAAT-TTTAAAAAATCC
321 TTGC--GCATCCCGTCT-CTC-TGGCCGGCGT-AGTGC-CCGCCCGCCCGCTCGTT------T--
* * ** * *** * * * ** *** **
17848084 CGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACCAGT-T-ATCTC-GCCAT-GAAAC
372 CG-TCGGT---TGGCTT-AGGCAT-ACG--GAGTTCATTCCCAGTCTAAGATCAG--ATCG-AA-
* * ** ** * * * *
17848145 TTCACGTGAAGGCTTAAG-GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
425 --C-C--G-AGGGTT--GTGA-CA--GTA-GGATCGAC-AG-CATGCAGA-GG----GGGA-CCC
***** * ** * *** * * *
17848209 GA--AATATGAAGATATGC-CTAAACC-CACCTACCACCCTA-TCGATC-CACGGCTACGCATCC
470 GACCAATCCCCGGCT-TGCGC-ATCCCGCCCCT-CTGGCCGACT-GAGCGC-CCGC-ACGC-T--
* ** * ** * * ** *
17848268 CGTCTCTCTGGCTGGCGTAGTAC-CCGCCCGCCCGCT-CGCCCGATCGTTTGTCAGTTGGCTTAG
526 CGT-T-TC--G-TGG-GTTG-ACTTAG---G--C-ATACG-GAGTTC-ATTCCCAG-T--C-TAA
** * * * *
17848331 GCATACGGAGTTCATTCTTAGTCTAAGATCAGACCGGACCAAGGGTTACGGTAGTAAGATGGACA
572 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT---G-CG--ACA--G-CA
* * * * * * **** * * * *
17848396 GCACGCAGAGAGGGACTCGGCCGATCCT-CAGTTTG-CGCATCCCACCCCCATGGCCGGCTAAGC
628 -CATGC----TGGG-CTCGGGC-AT-GTGCTG-GTGCCGCAT----TTTTCTTCGTCGG---GGC
* * ** * ** * * *
17848459 ACCCACACGCTCGTTTCGTGGGTTGACTCAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
677 A--C-CA---TCG--TCG-GAG--CA-TC--GC---CGGAGAACCTGACC-GAC--GGCAT-TGG
* * * * * * * * *
17848524 AGTTCATTCCCAGTCTAT-GATCGGACCGGACCGA-GGGTTGCAGCAGCACATGCTGGGCTCGA-
721 -G---GTT-CC-GACGATCG---GG--GGGGCCGAGGGGGTG-TGC-GCACATGATGTG--CGAT
* * * **** * * * ** * * *
17848586 GCATGTGCTGGTGCCGTATTTTTCTTCGTCA--GGGCACC-ATCACCGGAGC-ATCGTCGGAGAA
771 G--GGTGCTAGT-AC-T-TGGCCCTT-AT-ATTGGCCCCCTATC-CCTCATCAAACCTC-GAGAA
* ** * ** * ** * ** ***** *
17848647 CCTGACCGACGACATTATGGTTCCGACGATCGGGGGGTGGGGGGGTGTGC-GCACA-T-G--ATG
827 -CTCA-C-ACCCCCTTAAAG---AG-C-ATTTGAGATTTTACAGGTTTGCTGC-CAGTAGCCAT-
* * * *
17848707 TGCAATGGGTGCTGGTACT
882 T--AAAGTGT-CT-GAAAT
* * * ** ** * ** * ** *** ***
17848726 -TGG-CCCTTATGTTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGC
1 GGGGACACTT-T-TT----TCAAAT-GGTCA-CAAA-ATCTTGTA--CACTTCGAGTT-TTTAGC
** * * * * *
17848789 ATTTGAGATTTTATAGGTTTGCTGCCAGTAGCC-ATTAAAGTGTCTGAAATGGGGA-CACTTTTT
54 ---TGA-A-TTT-T---TTTG-TG-CA-T-GCCAAAAAAAAT-AC---AA---GGATCACGTCTA
* * * * ***
17848852 TCAA--AT-GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCAAGCCACC
99 CCAAGTTTGGGGC-CAAAA-C---T-C-CTTCCA------A----AAAAATTT-T-------A--
* * ** * * * *
17848914 AAAAAT-ATAGGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCAAAAAATTTTAAAAAA
137 AAAAATCCT---GAAC-CG--TAAAAAGTTT----CGAAAA-TC-GT--GAAAAA---TAGAAAA
* * * * *
17848978 TCCTGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCACGAAACT
185 --C-G-A--GT----CG--TC-----TTG-C-------------------------CATGAAACT
*
17849043 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCATGCAG
207 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
*
17849108 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGCATCCCGTCTC
272 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * * *
17849173 TCTGGCCGGCGTAGTACCCGCCCACCCGTCCGCTCGTTTTGTCAGTTGGCTTAGGCATACAGAGT
337 TCTGGCCGGCGTAGT----GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * ** * * * * *
17849238 TCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGTGGTAGCAGGACCGGCAGCACGTAGAGG
398 TCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTTGTGACAGTAGGATCGACAGCATGCAGAGG
* * * * *
17849303 GGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCGGCTGAGCGCCCGTACGCTTG
463 GGGACCCGACCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCG
* *
17849368 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAG
528 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* ** * * * *
17849433 TCTAAGATCAGACCAGACCTAGGGTTAAGGCAGCATATGCTGGGCTCGAGG-ATGTGCTAGTGCT
593 TCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCG-GGCATGTGCTGGTGCC
* * * * **
17849497 GCATTTTTC-T--T--------CA---TCGAAGCATCGCGGGAGAAGCTGATCGGTGGCATTGGG
657 GCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGG
* * * *
17849548 GTTCTGGCGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGG
722 GTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGG
* * *
17849612 CCCTTATATTGGCCCCTTATCCCTTATCAAACCTCGAGAACTCACACCCCCTTAAACAGCATTTG
787 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
*
17849677 AGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
852 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
17849722 GTGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGTTGAATTTTTTTG
1 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * ** * **
17849787 TGGATGCCAAAAAAAATAAAAGGATCACGTCTACCAAGTTTGGAACCAAAAATCC-TCCCGAAAA
66 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* * * *
17849851 ATTTTAAAAAATCCCGAACCGTAGAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTT
131 ATTTTAAAAAATCCTGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
17849916 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
196 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
17849981 TTGGCATGCACAAATATGAAGATGTGACTAAACCCACCTACCACCCTATCGATCCATGACTTGCG
261 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
** * *
17850046 CATCCCGTCTCTCTGGCCAACGTAGTGCCCGCCCGTCCGCTCGTTTCTTCGGTTGGCTTAGGCAT
326 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * ** ** * * *
17850111 -CTGGAGTTCATTCTCCA-TCTAAGATCAGATCGGACTGAGGGTTACGGTAGCAAGATCGGCAGC
391 AC-GGAGTTCATTC-CCAGTCTAAGATCAGATCGAACCGAGGGTTGTGACAGTAGGATCGACAGC
* * * * * * * *
17850174 ACGCAGAGGGGGACCCAATCGATCCTCGGCTCGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCT
454 ATGCAGAGGGGGACCCGACCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCC
*
17850239 GTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-TA---AG--
519 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * ** *
17850293 -------A-T-T--G----GACTAGACTGAGGGTTGCGGTAGCACATACTGGGCTCGGGCATGTG
584 CATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTG
* * * * *
17850343 CTGGTGTCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCGGAGATCCTGACCGACG
649 CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACG
* * * * *
17850408 GCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGGTGTGCGTACATGATGTGCAATGGGTGCTG
714 GCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTA
* * *
17850472 GTACTTGGCCCTTATATT-GTCCCCTATCCCTCATCAAACGTCGAGAGCTCACACCCCCTTAAAG
779 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* *
17850536 AGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCAATTAAAGTGTCTGAAAT
844 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
17850589 GGGGACACTTTTTTCAAACGGACACAAAATCTTGTACACTTCGAGTTTCTT-GGTGAATTTTTTT
1 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT-TTAGCTGAATTTTTTT
* * * *
17850653 GTGCACGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTAC-GAAA
65 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
* * * * *
17850717 AATTTTAAAAAATCCTGAACC-AAAAAATGTTTCAAAAATCATGAAAAATAGAAAACAAGTCCTC
130 AATTTTAAAAAATCCTGAACCGTAAAAA-GTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
17850781 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGGACCATTGTATGAATTTGCAAGCCATAAAAATG
194 TTGCCATGAAACTTCACGTGAAGGCTTAA-GGGACCATTGTATGAATTTACAAGCCATAAAAATG
*** * * ** *
17850846 GCATTGGCACATAGAAATATGAAAATGTGCCAAAACCCACCTACCACTTTATCGATTCACGGCTT
258 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
17850911 GCGCATCCTGTCTCTCTGGTCGGCGTAGT----GCCCGCCCGCTTGTTTTGTCGGTTGGCTTAGA
323 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * *
17850972 CATACGAAGTTCGTTCCCAGTCTAAGATCAGATC-AGACCAAGGGTTGCGACAGTAGGATC-AGC
388 CATACGGAGTTCATTCCCAGTCTAAGATCAGATCGA-ACCGAGGGTTGTGACAGTAGGATCGA-C
* * * * * * * *
17851035 AGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTTTGGTCGGCTGAGCG
451 AGCATGCAGAGGGGGACCCGACCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCG
* * ** * *
17851100 CCCGCATGCTCGTGTCGTGGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAAGCATATGAA
516 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * * * * * *
17851165 GTTCGTTTCTAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAACACATGCTGGGCTCGAGCAT
581 GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCAT
* ** *
17851230 GTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCA---TC---G--T---CGGAGAACCTTACCG
646 GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCG
* * *
17851284 GCGGCATTGGGGTTCCGACGATCGGGGGGGCCAAGGGGGTGTGCGCACATGATGTGCGATGCGTG
711 ACGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * ** *
17851349 CTGGTACTTGGCCCTTAAATTGGCCCCCTATCCCTCATCAAACCTTAAGAACTCACACCCCCATA
776 CTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
*
17851414 AAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAT
841 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
17851470 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAACTAAATTTTTTTA
1 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * ***
17851535 TGCATGCC-AACAAAATACAAGGATCACGTCTATCAAGTTTGGGACCAAAACTCCTTTTGAAAAA
66 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* * * * *
17851599 ACTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATAGTGAAAAATAGAAAATGAGTCGTCTT
131 ATTTTAAAAAATCCTGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * * *
17851664 GCCATGGAACTTCACATGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCACAAAAATGGCA
196 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * * *
17851729 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACGACCCTATCAATCCATGGCTTACG
261 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * ** *
17851794 CATCCCGTCTCTCTAGTCGATGTAGTGCCCGCCCGCCCGCCCGCCCGCCCGCTCGTTTCATCGGT
326 CATCCCGTCTCTCTGGCCGGCGTAGT------------GCCCGCCCGCCCGCTCGTTTCGTCGGT
* * * ** * *
17851859 TGGCTTACGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATAGAGGGTTGTGGCAGCAG
379 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTTGTGACAGTAG
* ** * * * * * *
17851924 GATCGGCAGCATGCA-TTGGGGTCCCGACCGATCCCCGGGTTGCGCATCACACCCCTCTGGCCGG
444 GATCGACAGCATGCAGAGGGGGACCCGACCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGA
* *
17851988 CTGAGCGCCCGCCCGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
509 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * * * * * *
17852053 ATACGCAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTGTGATAGCACATGCTGGGCT
574 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCT
* * * *
17852118 CGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCATTGGAGCATCGCCAGAGAAC
639 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAAC
* * * *
17852183 CTGACTGACGGCATTCGGGTTCCGACGAT---------C-AGGGGTTGTGCACACATGATGTGCG
704 CTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCG
* * *
17852238 ATGGGTGGTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACAC
769 ATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
17852303 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTCTCTGAAAT
834 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
17852366 GGGGAAACTTTTTTGAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTTTT
1 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
17852431 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAAATCCTTTCGAAAAA
66 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* * * * ** * * * *
17852496 ATTTTAACAAACCCCGAGCCACAAAAAGTTTCAAAAATCATGAAAAATAGAGAACGGGTCGTCTT
131 ATTTTAAAAAATCCTGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
17852561 GCCATAAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
196 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
17852626 CTGGCATGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCAATCC-CTGCCTTGC
261 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC-GGCTTGC
* *
17852690 GCATCCCGTCTCTCTGGCCGGCATAGTGCCTGCCCGCCTGCTTGCCCGTTCGTTTCGTCGGTTGG
325 GCATCCCGTCTCTCTGGCCGGCGTA--G--TGCCCGCC--C--GCCCGCTCGTTTCGTCGGTTGG
* * * * * * *
17852755 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGA-CCAGACTGAGGGTTGCGATAGCAAGA
382 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGA-ACCGAGGGTTGTGACAGTAGGA
* * * ** * *
17852819 TCGGCAGC-TCGTAGAGGGGGACCCGACCGATCCTGGGCTTGCGCATCCCGCCCCTCTGGCTGGC
446 TCGACAGCAT-GCAGAGGGGGACCCGACCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGAC
* * * *
17852883 TGAGCACCCGCACGCTCGTTTCGTTGATTGACTTAGGCATATGGAGTTCATTCCCAGTCT----A
510 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * *
17852944 T-----G---ATT----G----A-A-CAG----GACCGCGGGTTGCGGCAGCACATGCTGGGCTT
575 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTC
* * * * **
17852987 GGGCATGTGCTGGTGCCACATTTTTCTTCGCCAGGGCACCATCGCCAAAGCATCGCCGGAGAACC
640 GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACC
* *
17853052 TGACCGGCCGCATTGGGGTTCCGACGATC-GGGGGG-CG-GGGGGTGTGCGCACATGATGTGCGA
705 TGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGA
* * *
17853114 TGGGTGCTGGTTCTTGGTCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
770 TGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * * *
17853179 CCCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTTGCCGTTAAAGTGTTTGAAAT
835 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
17853241 GGGGAC-CTTTTTTTCAATTGGTCACAAAATCTTGTACACTTCGAGGTTTTAGCTGAATTTTTTT
1 GGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
17853305 GTGCATGCCAAAAAACATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
65 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
* * ** * * * *
17853370 AATTTTAAAAAATCCCGCACCCCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGTGTCTTCT
130 AATTTTAAAAAATCCTGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
17853435 TGCCATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
195 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
17853500 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCGACCACCCTATCGATCCACGGCTTGT
260 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * ** * * *
17853565 GCATCTCGTCTCTTTGGCTAGCGTAGTGCCCACCCGTCTGCTTGCCCGCTCATTTCATCGGTTGG
325 GCATCCCGTCTCTCTGGCCGGCGTAGTG----CCCG-C--C-CGCCCGCTCGTTTCGTCGGTTGG
** * * *
17853630 CTTAGGCATACGGAGTTCAAACTCAGTCTAAGATCAGA-CCAGA-TGAAGGG-T-T-ACAGTAGC
382 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGA-ACCG-AGGGTTGTGACAGT---
* * ** * ** * * *
17853690 AGGATCGGCAGTACACAGAGGGGGACCCGACCGATCCTTGACTTGCTCATCTCGCCCCTCTGGCC
442 AGGATCGACAGCATGCAGAGGGGGACCCGACCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * *
17853755 GGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
507 GACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * * *
17853820 -CAATACAAAGTTCATTCCCAGTCTAAGATC-GAACTAGATCGAGGGTTGCGGCTGCACATGCTG
572 GC-ATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGCGACAGCACATGCTG
* * * * * *
17853883 GGCTCGAGCAAGTGCTGGTGCCGTATTTTTCTTTGTCGGGGCACCATCGCCGGAGCATTGCCGGA
635 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGA
* * * * * * **
17853948 GAACCTGACAGGCCGCATTGGGCTTTCGACGAT------TG--G-GGGGGTGTGCATACATGATG
700 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATG
** * *
17854004 TATGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTCGAGAACTC
765 TGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
17854069 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGTCGTTAAAGTGTCTGAA
830 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
17854134 AT
895 AT
* *
17854136 GGGGACACTTTTTTCAAATGGTCACAAAACCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTG
1 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
17854201 TGCATGCCAACAAAAATACAAGGATCACGTCTACTAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
66 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* * * *
17854266 ATTTTAAAAAATCCTGAATCATAAAAAGTTTCGAAAATCATGAAACATAGAAAACGAGTCGTCTT
131 ATTTTAAAAAATCCTGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
17854331 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAATCCATAAAAATGGCA
196 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * *
17854396 TTGGCATGTAGAAATATGAAGATGTGCCTAAACCTACCTACCACCCTATTGATCCACGGCATGTG
261 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
** * **
17854461 CATCCCGTCTCTCTGGCCAACGTAGTGCCCACCCGTCCGTCCGCTCGTTTCGTCGGTTGGCCAAG
326 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG--C--CCGCTCGTTTCGTCGGTTGGCTTAG
* ** * * * *
17854526 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-AGACCGAGGGTT-ACATTAGCAGGATTGG
387 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGA-ACCGAGGGTTGTGA-CAGTAGGATCGA
** ** * * * * * *
17854589 CAAAACACAGAGTGGGACCTGGCCAATCCCCGACTTACGCATCCCGCCCCTCTGGCCG-GTCGAG
450 CAGCATGCAGAGGGGGACCCGACCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACT-GAG
* * * *
17854653 TGCCCACACGTTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-TA--
514 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
** *
17854710 -AG---A-T--C-G-----GAT-----CAGACCGAGGGTT-CTGGTAGCAGATGCTGGGCTCGGG
579 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC-GACAGCACATGCTGGGCTCGGG
* * *** **
17854756 CATGTGCTGGTGCCACATTTTACTTCGTAAAGGCACCATCACCGGAGCATCGCCGGAGAACCTGA
643 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGA
** * * * * * *
17854821 CCGGGGGCTTTGGGTTTCTGGCGATCGGGGAGGCCGGGGGGGTGTGCGCACATGATGTGCGATGG
708 CCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGG
** *
17854886 GTGCTAGTACTTGGCCCTTATATTTTCCCCCTATCCCTCATCAAACCTCGAGAACTCACAGCCCC
773 GTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
*
17854951 TTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
838 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
17855010 GGGGAGACCTTTTTCAAATGGTCACAAAATCTTGCACACTTCGATTTTTTAGCTGAATTTTTTTG
1 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
17855075 TGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCC-TCACAAAAT
66 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-CAAAAA
* * *
17855139 AATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATA-AAAGACGAGTCGTC
130 AATTTTAAAAAATCCTGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAA-ACGAGTCGTC
*
17855203 TTGCCATGAAACTTCACGTGAAGGCTTATGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
194 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
17855268 CATTGGCATGCAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATGCACGGCTTG
259 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
17855333 CGCATCCCGTCTCTCTGGCTGGTGTAGAGCCCGCCCGCCCACCAGCCCGCTCGTTTCATCGATTG
324 CGCATCCCGTCTCTCTGGCCGGCGT--AG--TGCCCG--C-CC-GCCCGCTCGTTTCGTCGGTTG
* ** * * * *
17855398 GCTTAGGCATTCGGAGTTCATTCATAGTCTAAGATC-GAACCGAACTGAGGGTTG-CAGCAGCAG
381 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ATCGAACCGAGGGTTGTGA-CAGTAG
* ** * **** * * * *
17855461 GATTGGTAGCACGCAGAGGGGGACCCGGTTGATCCACGGCTTGCGCATCCCACCACTCTGGCCGG
444 GATCGACAGCATGCAGAGGGGGACCCGACCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGA
* * *
17855526 TTGAGCGCCCGCACGCTAGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGC
509 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * * * * * * ** *
17855591 ATACAGAGTTCAATCCTAGTCTACA-ATCGGATCGGGCCGAGGGTTGCGGGAGCACATGCTAGGC
574 ATACGGAGTTCATTCCCAGTCTA-AGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTGGGC
* ***
17855655 TCGGGCATGTGTTGGTGCCGCATTTTTCTTTACCGGGG---CA----C----CATCGCCGGAGAA
638 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAA
* **
17855709 CCTGACCGGA-GGCATTAGGGTTCCGGA-GATCGGGGGTACCG-GGGGGTGTGCGCACATGATGT
703 CCTGACC-GACGGCATTGGGGTTCC-GACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGT
* *
17855771 GCGATGGGAGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
766 GCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
17855836 CGCCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
831 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
17855901 T
896 T
* * * *
17855902 GGGGGCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGTTGAACTTTTTTG
1 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * **
17855967 TGCAAGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTGCTTCTGAAAAA
66 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
** * *
17856032 ATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCTTGAAAAATAGAAAACGAGTCGTCTT
131 ATTTTAAAAAATCCTGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
17856097 GCCATGAAAGTTCACGTGAAGACTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAATGGCA
196 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
17856161 TTGGCATGCAGAAATATGAAGATGTACCTAAACCCAGCTACCACCCTATCGATCCATGGCTTGCA
261 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
17856226 CATCCCGTCTCTCTAGCCGGCGT-GTGCCCGCTCATCTGTCCGCCCACTCGTTTCGTCGATTCGC
326 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-----C---CCGCCCGCTCGTTTCGTCGGTTGGC
* ** * ** ** *
17856290 TTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTACGGTAGCAGGATC
383 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTTGTGACAGTAGGATC
** * * *
17856355 GACAGCCCGCAAAGGAGGACCCGACCGAA-CCCCGGCTTGCGCATCCCGCCCCTCTGGTCGGA-T
448 GACAGCATGCAGAGGGGGACCCGACC-AATCCCCGGCTTGCGCATCCCGCCCCTCTGG-CCGACT
* * *
17856418 GAGCGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCAT
511 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* * * * * *
17856483 ACGGAGTTCATTCCCAGTCTAGGATCGGACCGGACTGAGGGTTGCGGCAGCATATGCTGGGCTCG
576 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCG
* * * ** *
17856548 AGCATGTGCTGGAGCCTCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCAGAGAACCT
641 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCT
* * * * *
17856613 GATCGGCAGTATTGGGGTT-CGACGATCGGTGGGG-C-ATGGGGGTGTGCGCACATGATGTGCGA
706 GACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGA-GGGGGTGTGCGCACATGATGTGCGA
* * * *
17856675 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAAAACTCACATC
770 TGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
17856740 CCCTTAAAGAGTATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAAT
835 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
17856802 GGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAAATTTTTTG
1 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
17856867 TGCATACCAAAAAAAA-A-AAGGATCATGTCTACCAGGTTTGGGGCCAAAACACCTTCCGAAAAA
66 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
** ** *
17856930 ATTTTAAAAAATCCCAAACCCCAAAAAGTTTCCAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
131 ATTTTAAAAAATCCTGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
17856995 GCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
196 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
17857060 TTGGCA-CCCGAAAATATGAAGATGTGCCTAAA-CCACCTACCACCCTATCGATCCACGGCTTGC
261 TTGGCATGCAG-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * ** *
17857123 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCGGCCCGCACGCCCACCCGCTCATTTAATCGATTGG
325 GCATCCCGTCTCTCTGGCCGGCGTAGT----G--C-C-CGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * * * * ** *
17857188 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATC-GTTCCAGGCCAAGGGTTGCGGTAGCAGGA
382 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGA-ACCGAGGGTTGTGACAGTAGGA
* * * * * * * * * *
17857252 TC-AGTAGCACGCAAAGGGGGACCTGGCCGATCCCCGGCTTACGCATCCTGCTCCTCTGGCCGGC
446 TCGA-CAGCATGCAGAGGGGGACCCGACCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGAC
* * *
17857316 TGAGCACCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCA
510 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * * * *
17857381 TACGGAGTTTATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGC-AGCAGCATATACTGGGCT
575 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGA-CAGCACATGCTGGGCT
* *
17857445 CGGGCATGTGCTGGTGCCGTATTTTTCTTCGT-----CA--A-------AGCATCGTCGGAGAAC
639 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAAC
** ** *
17857496 CTGACCGGTGGCATTGGGGTTCTAACGATC-GGGAGGCCGAGGGGGGTGTGCGCACATGATGTGC
704 CTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGA-GGGGGTGTGCGCACATGATGTGC
* * * *
17857560 GATGCGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTCACA
768 GATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * *
17857625 CCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTATCTAAAAT
833 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
17857689 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTGTTAGCTGAATTTTTTTG
1 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
*
17857754 TGCATGCCAACAAAAATACAAGGATCAC
66 TGCATGCCAAAAAAAATACAAGGATCAC
17857782 ATCCACCATC
Statistics
Matches: 19979, Mismatches: 3842, Indels: 3477
0.73 0.14 0.13
Matches are distributed among these distances:
843 100 0.01
844 65 0.00
845 63 0.00
846 43 0.00
847 2 0.00
848 1 0.00
849 1 0.00
850 5 0.00
852 1 0.00
853 8 0.00
854 60 0.00
855 162 0.01
856 82 0.00
857 35 0.00
858 182 0.01
859 24 0.00
860 68 0.00
861 126 0.01
862 194 0.01
863 248 0.01
864 320 0.02
865 239 0.01
866 244 0.01
867 802 0.04
868 588 0.03
869 271 0.01
870 46 0.00
871 59 0.00
872 74 0.00
873 473 0.02
874 801 0.04
875 840 0.04
876 304 0.02
877 357 0.02
878 181 0.01
879 58 0.00
880 574 0.03
881 362 0.02
882 108 0.01
883 35 0.00
884 155 0.01
885 53 0.00
886 30 0.00
887 241 0.01
888 18 0.00
889 34 0.00
890 336 0.02
891 300 0.02
892 400 0.02
893 561 0.03
894 182 0.01
895 674 0.03
896 388 0.02
897 517 0.03
898 710 0.04
899 1114 0.06
900 569 0.03
901 527 0.03
902 427 0.02
903 514 0.03
904 239 0.01
905 399 0.02
906 70 0.00
907 72 0.00
908 5 0.00
909 33 0.00
910 10 0.00
911 36 0.00
912 6 0.00
913 40 0.00
914 37 0.00
915 63 0.00
916 41 0.00
917 31 0.00
918 22 0.00
919 222 0.01
920 115 0.01
921 48 0.00
922 7 0.00
923 7 0.00
924 46 0.00
925 55 0.00
926 14 0.00
927 18 0.00
928 18 0.00
929 7 0.00
930 11 0.00
931 4 0.00
932 1 0.00
933 6 0.00
934 17 0.00
935 22 0.00
936 22 0.00
937 15 0.00
938 16 0.00
939 18 0.00
940 19 0.00
941 19 0.00
942 6 0.00
943 10 0.00
945 3 0.00
947 1 0.00
948 4 0.00
949 3 0.00
950 6 0.00
951 5 0.00
952 11 0.00
953 16 0.00
954 9 0.00
955 8 0.00
956 3 0.00
957 2 0.00
958 11 0.00
959 7 0.00
960 12 0.00
961 23 0.00
962 17 0.00
963 16 0.00
964 7 0.00
965 13 0.00
966 11 0.00
967 15 0.00
968 18 0.00
969 8 0.00
970 22 0.00
971 3 0.00
972 17 0.00
973 19 0.00
974 25 0.00
975 18 0.00
976 23 0.00
977 9 0.00
978 19 0.00
979 5 0.00
980 11 0.00
981 13 0.00
982 2 0.00
983 12 0.00
984 30 0.00
985 12 0.00
986 15 0.00
987 20 0.00
988 12 0.00
989 11 0.00
990 5 0.00
991 5 0.00
992 5 0.00
993 11 0.00
994 2 0.00
995 12 0.00
996 11 0.00
997 26 0.00
998 19 0.00
999 18 0.00
1000 19 0.00
1001 15 0.00
1002 21 0.00
1003 10 0.00
1004 7 0.00
1005 19 0.00
1006 11 0.00
1007 6 0.00
1008 16 0.00
1009 4 0.00
1010 9 0.00
1011 17 0.00
1012 18 0.00
1013 17 0.00
1014 18 0.00
1015 8 0.00
1016 14 0.00
1017 26 0.00
1018 22 0.00
1019 12 0.00
1020 24 0.00
1021 18 0.00
1022 6 0.00
1023 6 0.00
1024 293 0.01
1025 362 0.02
1026 327 0.02
1027 516 0.03
1028 337 0.02
1029 533 0.03
1030 340 0.02
1031 366 0.02
1032 445 0.02
1033 334 0.02
1034 211 0.01
1035 281 0.01
1036 270 0.01
1037 224 0.01
1038 238 0.01
1039 305 0.02
1040 293 0.01
1041 217 0.01
1042 292 0.01
1043 262 0.01
1044 224 0.01
1045 273 0.01
1046 257 0.01
1047 221 0.01
1048 363 0.02
1049 133 0.01
1050 286 0.01
1051 152 0.01
1052 234 0.01
1053 126 0.01
1054 125 0.01
1055 437 0.02
1056 145 0.01
1057 148 0.01
1058 110 0.01
1059 200 0.01
1060 296 0.01
1061 182 0.01
1062 116 0.01
1063 90 0.00
1064 95 0.00
1065 89 0.00
1066 92 0.00
1067 101 0.01
1068 128 0.01
1069 76 0.00
1070 45 0.00
1071 68 0.00
1072 265 0.01
1073 39 0.00
1074 43 0.00
1075 45 0.00
1076 65 0.00
1077 215 0.01
1078 58 0.00
1079 55 0.00
1080 39 0.00
1081 79 0.00
1082 40 0.00
1083 25 0.00
1084 16 0.00
1085 15 0.00
1086 8 0.00
1087 9 0.00
1088 57 0.00
1089 14 0.00
1090 5 0.00
1091 16 0.00
1092 13 0.00
1093 12 0.00
1094 12 0.00
1095 38 0.00
1096 40 0.00
1097 20 0.00
1098 16 0.00
1099 2 0.00
1100 3 0.00
1101 7 0.00
1102 18 0.00
1103 17 0.00
1104 5 0.00
1105 4 0.00
1106 4 0.00
1107 4 0.00
1108 4 0.00
1109 5 0.00
1110 9 0.00
1111 2 0.00
1112 4 0.00
1113 3 0.00
1114 10 0.00
1115 5 0.00
1116 1 0.00
1118 1 0.00
1120 8 0.00
1121 6 0.00
1122 5 0.00
1123 4 0.00
1124 3 0.00
1127 3 0.00
1128 1 0.00
1130 1 0.00
1132 1 0.00
1133 6 0.00
1134 9 0.00
1135 6 0.00
1136 5 0.00
1137 2 0.00
1138 2 0.00
1139 16 0.00
1140 21 0.00
1141 8 0.00
1142 6 0.00
1143 5 0.00
1144 2 0.00
1146 4 0.00
1147 4 0.00
1148 6 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (896 bp):
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
ATTTTAAAAAATCCTGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
ACGGAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTTGTGACAGTAGGATCGACAGCAT
GCAGAGGGGGACCCGACCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGC
ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
TTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCT
GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGC
ATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGT
ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
Found at i:17834610 original size:26 final size:26
Alignment explanation
Indices: 17834571--17834621 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17834561 TTGACTTAGG
17834571 CATACGGAGATCATTCCCAGTCTAAT
1 CATACGGAGATCATTCCCAGTCTAAT
*
17834597 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGATCATTCCCAGTCTAA
17834622 GAACAAACCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
CATACGGAGATCATTCCCAGTCTAAT
Found at i:17839107 original size:705 final size:705
Alignment explanation
Indices: 17837740--17839137 Score: 2131
Period size: 705 Copynumber: 2.0 Consensus size: 705
17837730 GCACCCGTAC
* * *
17837740 GCTCGATTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGA
1 GCTCGATTCGTCGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA
* * *
17837805 GGGTTGCAGCAGCACATGCTTCGGTCGGGCATGTGCTGGTGCCGTATTTTTTTTCGTCGGGCCAC
66 GGGTTGCAGCAGCACATGCTTCGGTCAGGCATGTGCTGGTGCCGTATTTTTCTTCGTAGGGCCAC
* * * * *
17837870 CATCAGCCGGAGCATCACCGGAGAACCTGACCGATGGCATTAGGGTTCCGGCGATCGACGGGGCT
131 CATCAGCCAGAGCATCACCGGAGAACCTGACCGACGGCATTAGGGTTCCGACGATCAACGGGGCC
* *
17837935 GGGGGGGTGTGCGGACATGATGTGCGATGGGTGCTGATACTTGGCTCTTATATTGGCCCCCTATC
196 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATC
* * * *
17838000 GCTCATCAAACCTCGAGAACTCACACCCCCTTAAATAGTATATGAGATTTTACAGGTTTGCTGCC
261 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATATAAGATTTTACAGGTTTGCTGCC
* * *
17838065 AGTATCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGACACAAAATCTTGTACACTT
326 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGACAAAAAATCTTGAACACTT
* * ** * *
17838130 TGAGTTTTTAGCTGGTTTTTTTTGTGCATGCCAACAAAAAGAAATGGATCACGTCTACCCAGTTT
391 CGAGTTTTTACCTGAATTTTTTTGTGCATGCCAACAAAAAGAAATGGATCACGTCTAACAAGTTT
* * *
17838195 GGAGGCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCTGAACCATAAAAAGTTTCGAAAATCAT
456 GGAGGCAAAAATACTTCCAAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTCGAAAATCAT
* *
17838260 GAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGCCCATTGTATG
521 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATG
* *
17838325 AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATTAAGATGTACCCAAACCCACCTAC
586 AATTTACAAGCCATAAAAATGGCATTGACACGCAGAAATATGAAGATGTACCCAAACCCACCTAC
*
17838390 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGGGCCCGCCT
651 CACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCGGGCCCGCCT
* *
17838445 GCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA
1 GCTCGATTCGTCGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA
* * * * * *
17838510 GGGTTGCGGTAGCACATGC-TGGGCTTAGGTATGTGCTGGTGCTGTATTTTTCTTCGCTAGGG-C
66 GGGTTGCAGCAGCACATGCTTCGG-TCAGGCATGTGCTGGTGCCGTATTTTTCTTCG-TAGGGCC
* * * * *
17838573 ACCATC-GTCAGAGCATCGCCGGAGAACCTGACCGACGGCGTTGGGGTTCCGACGATCAAGGGGG
129 ACCATCAGCCAGAGCATCACCGGAGAACCTGACCGACGGCATTAGGGTTCCGACGATCAACGGGG
* *
17838637 CCGAGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
194 CCG-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCT
*
17838702 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCT
258 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATATAAGATTTTACAGGTTTGCT
* * * * *
17838767 GCCAGTAGCCATTAAAGTGTTTGAAATTGGGACAGTTTTTTCAAATGGTCAAAAAATCTTGAACC
323 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGACAAAAAATCTTGAACA
* *
17838832 CTTCGAGTTTTTACCTGAATTTTTTTGTGCATGCCAACAAAAATACAA-GGATCATGTCTAACAA
388 CTTCGAGTTTTTACCTGAATTTTTTTGTGCATGCCAACAAAAAGA-AATGGATCACGTCTAACAA
* * *
17838896 GTTTGG-GGCCAAAACTACTTCCAAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAA
452 GTTTGGAGG-CAAAAATACTTCCAAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTCGAAA
* **
17838960 ATCTTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATT
516 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATT
* *
17839025 GTATGAATTTACAAGCCATAAAAATGGCATTGACATGCAGAAATATGAAGATGTGCCCAAACCCA
581 GTATGAATTTACAAGCCATAAAAATGGCATTGACACGCAGAAATATGAAGATGTACCCAAACCCA
17839090 CCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCG
646 CCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCG
17839138 ACGTAGTGCC
Statistics
Matches: 623, Mismatches: 65, Indels: 10
0.89 0.09 0.01
Matches are distributed among these distances:
704 56 0.09
705 561 0.90
706 6 0.01
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.26
Consensus pattern (705 bp):
GCTCGATTCGTCGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA
GGGTTGCAGCAGCACATGCTTCGGTCAGGCATGTGCTGGTGCCGTATTTTTCTTCGTAGGGCCAC
CATCAGCCAGAGCATCACCGGAGAACCTGACCGACGGCATTAGGGTTCCGACGATCAACGGGGCC
GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATC
CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATATAAGATTTTACAGGTTTGCTGCC
AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGACAAAAAATCTTGAACACTT
CGAGTTTTTACCTGAATTTTTTTGTGCATGCCAACAAAAAGAAATGGATCACGTCTAACAAGTTT
GGAGGCAAAAATACTTCCAAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTCGAAAATCAT
GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATG
AATTTACAAGCCATAAAAATGGCATTGACACGCAGAAATATGAAGATGTACCCAAACCCACCTAC
CACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCGGGCCCGCCT
Found at i:17839384 original size:26 final size:26
Alignment explanation
Indices: 17839348--17839399 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
17839338 TTGACTTAGT
* * *
17839348 CATATGGAGTTCATTCTCAGTCTAAG
1 CATACGGAGTTCATTCCCAGACTAAG
17839374 CATACGGAGTTCATTCCCAGACTAAG
1 CATACGGAGTTCATTCCCAGACTAAG
17839400 ATTGCACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGACTAAG
Found at i:17841153 original size:26 final size:26
Alignment explanation
Indices: 17841124--17841176 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17841114 GTTAACTTAG
17841124 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
17841150 GCATATGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17841176 G
1 G
17841177 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17843344 original size:867 final size:863
Alignment explanation
Indices: 17838398--17847122 Score: 8939
Period size: 867 Copynumber: 10.0 Consensus size: 863
17838388 ACCACCCTAT
* * * * * *
17838398 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC-G-G-GCCCGC-CTGCTCGTTTCGTCGG
1 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCACCCGCAC-GCTCGTTTCGTGGG
* * * * *
17838459 TTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCA
65 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCA
** * * * * * *
17838524 CATGCTGGGCTTAGGTATGTGCTGGTG-CTGTATTTTTCTTCGCTAGGGCACCATCGTCAGAGCA
130 CATGCTGGGCTCGGGCATGTGCTGGTGCCT-CATTTTTCTTCGTTGGGGCACCATCGCCGGAGCA
* * *
17838588 TCGCCGGAGAACCTGACC-GACGGCGTTGGGGTTCCGACGATCAAGGGGGCCGAGGGGGGTGTGC
194 TCGCCGGAGAACCTGACCAG-CGACATTGGGGTTCCGACGATC-GGGGGGCC--GGGGGGTGTGC
*
17838652 GCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
255 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
*
17838717 TCGAGAACTCACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
320 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * * * * * *
17838782 AGTGTTTGAAATTGGGACAGTTTTTTCAAATGGTCAAAAAATCTTGAACCCTTCGAGTTTTTACC
385 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * *
17838847 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTAACAAGTTTGGGGCCAAAACT
450 TGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * * * ** *
17838912 ACTTCCAAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCTTGAAAAATAGAAA
515 CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAA
17838977 ACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
580 ACGAGTCGTCTTGCCATGAAA---C-T-T-----C---AGGGACCATTGTATGAATTTACAAGCC
* * * *
17839042 ATAAAAATGGCATTGACATGCAGAAATATGAAGATGTGCCCAAACCCACCTACCACCCTATCGAT
632 ATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGAT
* * *
17839107 CCACGACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTCCG---CCCGGTC
697 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CC-CCCGTCCGCCCCCCGCTC
* ** * * * * ** * *
17839169 GTTTCGTCGGTTGGCTTTGAAATACAGAGTTCATTCCTAGTCGAAGATCGGACTGGACTGAGTGT
760 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC-AAGGGT
* ** * *
17839234 TGCGGCAGCAGGATC-AGTAGCACATAGAGGCGGACTCGAC
824 TGCGACAGCAGGATCGA-TAGCACGCAGAGGGGGACCCGAC
* * * * * * * * * **
17839274 CGATCCCCGACTTGCACATCCCGCCCCTTTGGCCGACTAAACGCCCGCACGCTCATTTTATGGGT
1 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCACCCGCACGCTCGTTTCGTGGGT
* * *
17839339 TGACTTAGTCATATGGAGTTCATTCTCAGTCTAAGCATACGGAGTTCATTCCCAGACTAAGATTG
66 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---A-T------C---G---G
* *
17839404 CACCGGATCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTT
111 -ACC-G----AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCTCATTTTTCTT
* ** * * * ** *
17839469 CGTCGGGGCACCATCTTCGGAGCATCGCCAGAGAACCTGATC-GACGGCATTGGGGTTTAGACAA
170 CGTTGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCAG-CGACATTGGGGTTCCGACGA
* * * * *
17839533 TCGGGGGGGCCAGGGGGTATGCTCACATGATTTGGGATGGGTGCTGGTACTTGGCCCTTATATTG
234 TC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* *
17839598 GCCCCCTATCCCTCATCCAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAG
298 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* * *
17839663 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGTGAACAC--TTTTCAAACGGTCACAAAATC
363 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * * * *
17839726 TTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATACCAACAAAAATGCAAGGATCATGTC
428 TTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* ** *
17839791 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAAAAGCAAAAAGTTT
493 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
*
17839856 AAAAAAT-AGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
558 CAAAAATCA-TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC-T----T-----C---AGGG
* * * *
17839920 ACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTA
609 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTACCTA
*
17839985 AACCCACCTACCACCCTATCGATCCACGGCTGGCGCATCCCG------T---C--C--A---CCC
674 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC
* * * * * *
17840034 G---CC-T--G---CTCGCCCGTTTCATCAGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCGA
739 GCCCCCGTCCGCCCCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * * * *
17840090 AGATCAGACCAGACCGAGGGTTAC-AGTAGCAAGATC-AGCAGTACGTAGAGGGGGACCCGAC
804 AGATCAGACCAGA-CAAGGGTTGCGA-CAGCAGGATCGA-TAGCACGCAGAGGGGGACCCGAC
* * *** *
17840151 CTATCCCCGGCTTGCGCATCCCACCCCTCTGGCCAACTGAGCACCCGCACGCTCGTTTCGTTGGT
1 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCACCCGCACGCTCGTTTCGTGGGT
* * *
17840216 TGAATTAGGCATACAGAATTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCGAAGATCG
66 TGACTTAGGCATACGGAGTTCATTCCCAG--T---C-TA---AG----------ATC--AGATCG
* * * *
17840281 GACCGGACTAAGGGTTACGCCAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
110 GACC-G----AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCTCATTTTTCTT
* * * * * * * * *
17840346 CGTCGGGGTACCATCGCCGTG-GCATCACCGGAGAACCTAATCGGTGGCATTGGGGTTCCGATGA
170 CGTTGGGGCACCATCGCCG-GAGCATCGCCGGAGAACCTGACCAGCGACATTGGGGTTCCGACGA
* *
17840410 TCGGGGGGCCGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGG-CCTTATATCGG
234 TCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
*** * * *
17840474 CCTTGTATCCCTCATCAAACCTCGAGAACTCACACGCCCTTCAAGAGCATTTGAGATTTTATAGG
299 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* * *
17840539 TTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATAT
364 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* * * *
17840604 TATACACTTCGAGTTTTTGGCTAAATT-TTTTTTGCATGCCAACAAAAATACAAGGATCACGTCT
429 TGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * * * * ** *
17840668 TCGAAGTTTGGGTCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAATTGCAAAAAGTTTC
494 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTC
* * *
17840733 AAAAATCGTGAAAAATAGAAAACAAGTCGTGTTGCTATGAAACTTCACGTGAAAGCTTAAGGGAC
559 AAAAATCATGAAAAATAGAAAACGAGTC--G-T-CT-TG---C--CA--TGAAA-CTTCAGGGAC
* * * * *
17840798 CACTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAAAAATATGAAGATGTGCCTAAA
611 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTACCTAAA
* * ** *
17840863 CCCACCTACCA-CCAAGTCGATTCACGGCTTATGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG
676 CCCACCTACCACCCTA-TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG
*
17840927 --CCCG-CCAGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCT
740 CCCCCGTCC-GCCC-CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* ** * * * * *
17840989 AAGATCAGACCAGAGCAAGGGTTAC-AGTGGCAGGATTGGTAGCATGTAGAGAGGGACCCGAC
803 AAGATCAGACCAGA-CAAGGGTTGCGA-CAGCAGGATCGATAGCACGCAGAGGGGGACCCGAC
* * * * *
17841051 TGATCCCCAGCTTGCCCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCATGCTCGTTTCGTGGGT
1 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCACCCGCACGCTCGTTTCGTGGGT
*
17841116 TAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTTCCAGTCTAAGATTG
66 TGACTTAGGCATACGGAGTTCATTCCCAG--T---C-TA---AG---------A-TC--AGA-T-
* * * * * * *
17841181 GACCGGATCGAGGGTTGTGGTAGGACTTGCTGGGCTCGGGCATGTGCTGGTG-ATGCATTTCTCT
108 ---CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCT-CATTTTTCT
* * * * * * * *
17841245 TCGTCGGGGCACCATCGTCGGAGTATCACCGGAGAACCTGATC-GATGACATTAGGGTTTCGACG
169 TCGTTGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCAG-CGACATTGGGGTTCCGACG
* * * *
17841309 ACCGGGGGGGCCGGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTATTTGACCCTTATATT
233 ATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* * *
17841374 GGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCATTAAAGAGTATTTGAGATTTT-CT
297 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC-
* *
17841438 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTCTTTCAAATGGTCACAAAA
361 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * **
17841503 TCTTGTACACTTCGAGTTTCTAGCTGAAGTT-TTTTGTGCATGCCAAGAAAAATGGAAGGATCAC
426 TCTTGTACACTTCGAGTTTTTAGCTGAA-TTGTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* * * * *
17841567 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAGAAAACTTTAAAAAATCTCGAACCATAAATAG
490 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG
* * * *
17841632 TTTCAAAAATCATGAAAAATAAAAAATGAGTCGTCTTGGCATGAAGCTTCACGTGAAGGCTTAAG
555 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC-T----T---GC--CA--TGAA-ACTTCAG
* * * * *
17841697 GGACCATTCTATGAATTTACAA-CATATAAAAATGGCATTGGTACGCAAAAATATGAAGATGTGC
607 GGACCATTGTATGAATTTACAAGC-CATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTAC
*
17841761 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGGCGTAGTG
671 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG
* * * *
17841826 CCCG--CCCATCCG---CCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTTCTAGT
736 CCCGCCCCCGTCCGCCCCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* *
17841886 GTAAGATCAGACCAGAGCAAGGGTTGCGACAGCAGGATCGGTAGCACGCAGAGGGGGACCCGAC
801 CTAAGATCAGACCAGA-CAAGGGTTGCGACAGCAGGATCGATAGCACGCAGAGGGGGACCCGAC
* * * * * *
17841950 CAATCCTCGGCTTGCCCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCATGCTCGTTTCGTAGGT
1 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCACCCGCACGCTCGTTTCGTGGGT
* * * * **
17842015 TGAGTTTGGCATACGGACTTCATTCCCAGTCTAAGATCAGA-CTGGACTGAGGGTTGCGATAGCA
66 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATC-GGACCGAGGGTTGCGGCAGCA
* * * * *** *
17842079 CATGCTGGGCTCGAGCTTGTGCTGCTGTCTCATTTTTCTTCACCGGGGCACCATCGCTGGAGCAT
130 CATGCTGGGCTCGGGCATGTGCTGGTGCCTCATTTTTCTTCGTTGGGGCACCATCGCCGGAGCAT
* * ** * *
17842144 CACCGAAGAATGTGATC-GAC-AGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCAC
195 CGCCGGAGAACCTGACCAG-CGA-CATTGGGGTTCCGACGATCGGGGGGCC-GGGGGGTGTGCGC
* * *
17842207 ACATGATGTGTGATGGGTGCTGGTACTTTGCCCTTATATTGGCCCCCTATCCCTCAACAAACCTC
257 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* * * *
17842272 GAGAAGC-CACACCCCCTTTAAAGAGAATTTGAAACTTTACAGGTTTGCTGCTAGTAGCCATTAA
322 GAGAA-CTCACACCCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * *
17842336 AGTGTCTGAAATGGGGACACTTTTTTTAATTGGTCACAAAATCTTGTACACTTCGAGTTTTTAAC
385 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
*
17842401 TGAATTGTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
450 TGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * * * * * * *
17842466 CCTTTCGAAAAAATTTTAAAAAATCTCGAATCGTAAAAAGTTTCGAAAAGCGTAAAAAATAGAGA
515 CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAA
* *
17842531 ACGAGTTGTCTTGCCATGAAACTTCAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAAT
580 ACGAGTCGTCTTGCCATGAAACTTCAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
17842596 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCACGACTTGCGC
645 TGGCACGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * *
17842661 ATCCCGTCTCTTTGGTCGGCATAGTGCCCGCCCACCCGTCCGCCCACCCGCTCGTTTCGTCGGTT
710 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CC-CCCGTCCGCCC-CCCGCTCGTTTCGTCGGTT
* * * ** * *
17842726 GGCTTAGGCATACGGAGCTCATTCCCAGTATAAGATCGGACTGGATCGAGGGTTACGACAGCAGG
772 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CAAGGGTTGCGACAGCAGG
* * * *
17842791 ATCGACAGCACGAAGAGGTGGACCCAAC
836 ATCGATAGCACGCAGAGGGGGACCCGAC
* * *
17842819 CGATCCCCAGCTTGCGCATCCTGCCCCTTTGGCTGGCTGAGCACCCGCACGCTCGTTTCGTGGGT
1 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCACCCGCACGCTCGTTTCGTGGGT
* * * * *
17842884 TGACTTAGGCATACAGAGTTCATTCACAGTCTAAG-GCTGGA-CCGACCTGAGGGTTGCGGCAGC
66 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-AGATCGGACC-GAGGGTTGCGGCAGC
* * * * *
17842947 ACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTCTCTTTGTTGGGGTACCATCACCGGAGCA
129 ACATGCTGGGCTCGGGCATGTGCTGGTGCCTCATTTTTCTTCGTTGGGGCACCATCGCCGGAGCA
* * * * * * **
17843012 TCGTCAGAAAACCTGACCAGCGACATTGAGGTTTCGACGATCAGGAGGG-AAGGGGGTGTGCGCA
194 TCGCCGGAGAACCTGACCAGCGACATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCA
* *
17843076 CATGATGTGCTATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
258 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
*
17843141 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGC
323 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* * *
17843206 GTCTGAAATGGGGACACTTCTTTCAAATGGTCACAAAATCTTGTACACTTCAATTTTTTAGCTGA
388 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* *
17843271 ATTGTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCAACCAAGTTTGGGGCCAAAACTCCT
453 ATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
* * * * *
17843336 TCCGAAAAAATTTCAAAATATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAATG
518 TCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
* *
17843401 AGTCGTCTTGGCATGAAGCTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
583 AGTCGTC-T----T---GC--CA--TGAA-ACTTCAGGGACCATTGTATGAATTTACAAGCCATA
* * * * **
17843466 AAAATGGCATTGGCAGGAAGAAATATGAAGATGCACCTAAACCAACCTACCACCCTATTAATCCA
635 AAAATGGCATTGGCACGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCA
* * *
17843531 TGGCTTGCGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCG----C-T-CG---CCCGCTCTTTTC
700 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCCGTCCGCCCCCCGCTCGTTTC
* * *
17843587 GTCGGTTGGCTTAGGCATACGAAGTTCATT-CCAGTCTAAGATCAGACCAGACTGAGGGTTGCGG
765 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC-AAGGGTTGCGA
*
17843651 CAGTAGGATCGATAGCACGCAGAGGGGGACCCGAC
829 CAGCAGGATCGATAGCACGCAGAGGGGGACCCGAC
** *
17843686 CGATCCCCGGCTTGCGCATTTCGCCCCTCTGGCTGGCTGA-CACCCGCACACGCTCGTTTCATGG
1 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCACCCG--CACGCTCGTTTCGTGG
*
17843750 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGGCAGC
64 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGC
* * * * ** * *
17843815 ACATGCTAGGCTCGGGCATGTGCTAGTGCCTTATTTTTCTTCGCTGGGGTGCAATCGTCGGAGCA
129 ACATGCTGGGCTCGGGCATGTGCTGGTGCCTCATTTTTCTTCGTTGGGGCACCATCGCCGGAGCA
* **
17843880 TCGCCGGAGAACCTGAGCA-AAAGCATTGGGGTTCCGACGATCGGGGGGCC-GGGGGTGTGCGCA
194 TCGCCGGAGAACCTGACCAGCGA-CATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCA
*
17843943 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTCG
258 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
* * * *
17844008 AGAACTCACACACTCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTAGCCATTAAAGT
323 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* *
17844073 GT-TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAACTTTTTAGCTG-
388 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * * *
17844136 ATTTTTTTGTGGATGCCAACAAAAATACAAGGATCACGTCTACCAAGCTTGGGACCAAAACTCCT
453 ATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
* *
17844201 TTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
518 TCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
*
17844266 -GTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATA
583 AGTCGTCTTGCCATGAAAC-T----T-----C---AGGGACCATTGTATGAATTTACAAGCCATA
* *
17844330 AAAATGGCATTGGCACGAAGAAATATGAAGATGTACGTAAACCC-CCTACCACCCTATCGATCCA
635 AAAATGGCATTGGCACGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCA
* *
17844394 CAGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG----C-T-CG---CCCGCTCTTTTC
700 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCCGTCCGCCCCCCGCTCGTTTC
* *
17844450 GTCGGTTGGCTTAGGCATACGAAGTTCATT-CCAGTCTAAGATCAGACCAGACTAAGGGTTGCGG
765 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC-AAGGGTTGCGA
*
17844514 CAGTAGGATCGATAGCACGCAGAGGGGGACCCGAC
829 CAGCAGGATCGATAGCACGCAGAGGGGGACCCGAC
* ** * *
17844549 CGATCCCCGGCTTACGCATTTCGCCCCTCTGGCTGGCTGAGCACCCGCACACTCGTTTCATGGGT
1 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCACCCGCACGCTCGTTTCGTGGGT
*
17844614 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGGCAGCAC
66 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAC
* * * * ** * *
17844679 ATGCTAGGCTCGGGCATGTGCTAGTGCCTTATTTTTCTTCGCTGGGGTGCAATCGTCGGAGCATC
131 ATGCTGGGCTCGGGCATGTGCTGGTGCCTCATTTTTCTTCGTTGGGGCACCATCGCCGGAGCATC
* **
17844744 GCCGGAGAACCTGAGCA-AAAGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGGGTGTGCGC
196 GCCGGAGAACCTGACCAGCGA-CATTGGGGTTCCGACGATC-GGGGGGCC--GGGGGGTGTGCGC
*
17844808 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTC
257 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* * * *
17844873 GAGAACTCACACACTCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTAGCCATTAAAG
322 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
17844938 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT--A---C--------A-C--
387 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
*
17844987 --TTG---TG-G-ATGCCAACAAAAATACAAGGATCACGTCTACCAAGCTTGGGGACCAAAACTC
452 AATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CCAAAACTC
17845045 CTT-CG-AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
516 CTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
*
17845108 CG-GTCGTC-TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCA
581 CGAGTCGTCTTGCCATGAAAC-T----T-----C---AGGGACCATTGTATGAATTTACAAGCCA
* * *
17845171 TAAAAATGGCATTGGCACGAAGAAATATGAAGATGTACGTAAACCGACCCTACCACCCTATCGAT
633 TAAAAATGGCATTGGCACGCAGAAATATGAAGATGTACCTAAACCCA-CCTACCACCCTATCGAT
* * *
17845236 CCACAGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCTCGCCCGCCCG-CCGCCCGCC-CT
697 CCAC-GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CC-CCCGTCCGCCCCCCGCT
* * ** *
17845299 TGTTTTCTTCGG-TGGC-TAATCATACGGAGTTTCATTCCCAGTCTAAGATCAGACCAGACCAAA
759 CG-TTTCGTCGGTTGGCTTAGGCATACGGAG-TTCATTCCCAGTCTAAGATCAGACCAGA-CAAG
* * * * * *
17845362 GGTTACGGCAACTGGATCGGGTAGCACGCACGAGGGGGACCCGAT
821 GGTTGCGACAGCAGGATC-GATAGCACGCA-GAGGGGGACCCGAC
* * * * * * *
17845407 CGATCCTCGGGTTACGCATCCCGCCCCTCTGGCCT-GCTGAGCGCCTGCACGGTCATTTCGGTGG
1 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGG-CTGGCTGAGCACCCGCACGCTCGTTTC-GTGG
* * *
17845471 G-TGACTTAGG-ATAACGGAGTTCATTCCCAGGTCTAAGGATCAGATCGGACCGGGGGTTGTGAC
64 GTTGACTTAGGCAT-ACGGAGTTCATTCCCA-GTCTAA-GATCAGATCGGACCGAGGGTTGCGGC
* * *
17845534 AGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCA-TTTTCTTCGTT-GGGCACCATCACCGGA
126 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCTCATTTTTCTTCGTTGGGGCACCATCGCCGGA
** * * * *
17845597 GCATCATCGGAGAACCTGACCGGTGACATTGGGGTTCCGGCGATCGGGGTGCCGGGGGGTGTGCG
191 GCATCGCCGGAGAACCTGACCAGCGACATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCG
* * *
17845662 CACATGATGTGCGAAGGGTGCTGGTACTTGGCGCTTGTATTGGCCCCCTATCCCTCATCAAACCT
256 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* * * *
17845727 TGAGAACTAACAACCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAA
321 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
*
17845792 GTGTCTGAAATGGGGACCACTTTTTGCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
386 GTGTCTGAAATGGGGA-CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * *
17845857 TGAATTTTTTTTTTGCATGCCAAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
450 TGAA-TTGTTTTGTGCATGCC-AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * *
17845922 CTCCTTTCG-AAAAATTTTAAAAAATCTCGAACCGTAAAAAGTGTCAAAAATCATG-AAAATAGA
513 CTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGA
* * *
17845985 AAACGAGTCGTCATGCTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
578 AAACGAGTCGTCTTGC-CA--TGAA-ACTTCAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
17846050 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
639 TGGCATTGGCACGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGC
* * *
17846115 TTGCGCATCCAGTCTCTCTGGCCGAC-TAGTGCCCG--CCCGT---CCCGCCGC-CGTTTC-TCG
704 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCCGTCCGCCCCCCGCTCGTTTCGTCG
* * *
17846172 GTTGGTCTTAGGCATACGTAATTCATTCCCAGTCTAAGATCAGACCGGACAAGGGTTGCGGACAG
769 GTTGG-CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACAAGGGTTGC-GACAG
* * *
17846237 CAAGATGGATAGCACGC--AGGGGGACTCCG-G
832 CAGGATCGATAGCACGCAGAGGGGGAC-CCGAC
* * * * * *
17846267 CGATCCCCGGCTTGAGCATCCC-ACCC-CTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGT
1 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCACCCGCACGCTCGTTTCGTGGGT
*** *
17846330 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT-ATGGAGTTCATTCC--TGGTCTAAGA
66 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATCA--GA--TCGGACCGAGGGT-T--G-
* * * * * ** *
17846392 TCGGACGGGACTGAGGGTGGGCTCAGGCATGTGCTGGTGTCAGCATTTTTCTTCGTCGGGG-ACC
122 -CGG-CAGCAC--ATGCTGGGCTCGGGCATGTGCTGGTG-CCTCATTTTTCTTCGTTGGGGCA-C
* * *
17846456 CATCGCCCAGAGCATCGCCGGA-AGACGGCTGACCGGCG-GATTGGGGTT-CGACGATCGAGGGG
181 CATCG-CCGGAGCATCGCCGGAGA-AC--CTGACCAGCGACATTGGGGTTCCGACGATCG-GGGG
*
17846518 GTCGGGGGGGTGCTGCGCACATGATGGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
241 G-CCGGGGGGTG-TGCGCACATGAT-GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* * * * **
17846583 CTATCTCTCA-CAAACCTCGAAAACTCTCACCCCTTTAAAGAGCATTTGAG-TTCTTACAGGTGC
303 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT-TTACAGGTTT
*
17846646 CCTAGCCAGTAGCCATTAAAGTGTCTGAAATTGGGGACACTTTTTTTCAAATGGTCACAAAATCT
367 GCT-GCCAGTAGCCATTAAAGTGTCTGAAA-TGGGGACAC-TTTTTTCAAATGGTCACAAAATCT
* * * *
17846711 TGTACACTCCGAGTTTTGAGTTGAATT-TTTTGTGCATGCCAGCAAAAAATACAAGGATCACGTC
429 TGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAAC-AAAAATACAAGGATCACGTC
17846775 TACCAAGTTT-GGGCCAAAAACTCCTTCCG-AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTT
493 TACCAAGTTTGGGGCC-AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTT
*
17846838 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCGTGCCATGAAACTTCACGTGAAGGCTTAAGGA
557 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT--C----A-G-----GGA
*
17846903 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAA
610 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTACCTAA
* * *
17846968 ACCCACCTACCACCC-ATCGATCCACGACATGCGCATCCCGTCTCTCTGGCCGGCTTAGTGCCCG
675 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG
* * *
17847032 TCCGCCCGCCCGCCCGTCCGCTCGTTT-GTTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGT
740 -CC-CCCGTCCGCCC-CCCGCTCGTTTCG-TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
** *
17847096 CTAAGATTGGACCAGACCGAGGGTTGC
801 CTAAGATCAGACCAGA-CAAGGGTTGC
17847123 AGCAGCACAT
Statistics
Matches: 6771, Mismatches: 764, Indels: 612
0.83 0.09 0.08
Matches are distributed among these distances:
843 100 0.01
844 65 0.01
845 64 0.01
846 49 0.01
847 2 0.00
850 2 0.00
851 1 0.00
852 6 0.00
853 3 0.00
854 13 0.00
855 158 0.02
856 81 0.01
857 34 0.01
858 188 0.03
859 30 0.00
860 83 0.01
861 129 0.02
862 197 0.03
863 242 0.04
864 129 0.02
865 135 0.02
866 240 0.04
867 503 0.07
868 293 0.04
869 294 0.04
870 42 0.01
871 43 0.01
872 60 0.01
873 411 0.06
874 321 0.05
875 166 0.02
876 291 0.04
877 316 0.05
878 9 0.00
879 55 0.01
880 162 0.02
881 128 0.02
882 96 0.01
883 6 0.00
884 3 0.00
885 10 0.00
886 10 0.00
887 1 0.00
888 7 0.00
889 5 0.00
890 8 0.00
891 43 0.01
892 22 0.00
893 5 0.00
894 5 0.00
895 3 0.00
896 1 0.00
897 1 0.00
898 2 0.00
899 191 0.03
900 298 0.04
901 341 0.05
902 147 0.02
903 399 0.06
904 6 0.00
905 114 0.02
906 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (863 bp):
CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCACCCGCACGCTCGTTTCGTGGGT
TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAC
ATGCTGGGCTCGGGCATGTGCTGGTGCCTCATTTTTCTTCGTTGGGGCACCATCGCCGGAGCATC
GCCGGAGAACCTGACCAGCGACATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACAT
GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
GTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
CGTCTTGCCATGAAACTTCAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
GCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
TCTCTCTGGCCGGCGTAGTGCCCGCCCCCGTCCGCCCCCCGCTCGTTTCGTCGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACAAGGGTTGCGACAGCAGGATCGATAGCA
CGCAGAGGGGGACCCGAC
Found at i:17846374 original size:26 final size:26
Alignment explanation
Indices: 17846338--17846390 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17846328 GTTGACTTAG
17846338 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* **
17846364 GCATATGGAGTTCATTCCTGGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17846390 G
1 G
17846391 ATCGGACGGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17847973 original size:26 final size:26
Alignment explanation
Indices: 17847944--17847994 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
17847934 GTTGACTCAG
* *
17847944 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
17847970 GCATACAGAGTTGATTCCCAATCTA
1 GCATACAGAGTTCATTCCCAATCTA
17847995 CCAAGTTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:17848526 original size:26 final size:26
Alignment explanation
Indices: 17848490--17848540 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
17848480 GTTGACTCAG
17848490 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17848516 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
17848541 TGATCGGACC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17849416 original size:26 final size:26
Alignment explanation
Indices: 17849386--17849438 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17849376 GTTGACTTAG
*
17849386 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17849412 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17849438 G
1 G
17849439 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17851829 original size:4 final size:4
Alignment explanation
Indices: 17851820--17851845 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
17851810 TCGATGTAGT
17851820 GCCC GCCC GCCC GCCC GCCC GCCC GC
1 GCCC GCCC GCCC GCCC GCCC GCCC GC
17851846 TCGTTTCATC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.00, C:0.73, G:0.27, T:0.00
Consensus pattern (4 bp):
GCCC
Found at i:17852055 original size:26 final size:26
Alignment explanation
Indices: 17852025--17852077 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17852015 GTTGACTTAG
*
17852025 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGCAGTTCATTCCCAGTCTAA
17852051 GCATACGCAGTTCATTCCCAGTCTAA
1 GCATACGCAGTTCATTCCCAGTCTAA
17852077 G
1 G
17852078 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGCAGTTCATTCCCAGTCTAA
Found at i:17853832 original size:26 final size:26
Alignment explanation
Indices: 17853796--17853845 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
17853786 TGACTTAGGC
*
17853796 ATACGAAGTTCATTCCCAGTCTAACA
1 ATACAAAGTTCATTCCCAGTCTAACA
17853822 ATACAAAGTTCATTCCCAGTCTAA
1 ATACAAAGTTCATTCCCAGTCTAA
17853846 GATCGAACTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.36, C:0.26, G:0.10, T:0.28
Consensus pattern (26 bp):
ATACAAAGTTCATTCCCAGTCTAACA
Found at i:17855122 original size:874 final size:875
Alignment explanation
Indices: 17848000--17857781 Score: 11086
Period size: 895 Copynumber: 11.0 Consensus size: 875
17847990 ATCTACCAAG
* * *
17848000 TTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGTCAAAACTCCTTCC
1 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC
* *
17848065 G-AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACCAGT
66 GAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
** *
17848129 TATCTCGCCATGAAACTTCACGTGAAGGCTTAA-GGACCATTGTATGAATTTACAAGCCATAAAA
131 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
*
17848193 ATGGCATTGGCATGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGG
196 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * *
17848258 C-TACGCATCCCGTCTCTCTGGCTGGCGTAGTACCCGCCCGCCCGCTCGCCCGATCGTTT-GTCA
261 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCGCCCGCCCGCCCGCTCGTTTCGTCG
** * * ** * * *
17848321 GTTGGCTTAGGCATACGGAGTTCATTCTTAGTCTAAGATCAGACCGGACCAAGGGTTACGGTAGT
322 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACTGAGGGTTGCAGTAGC
* * * * * * * *
17848386 AAGAT-GGACAGCACGCAGAGAGGGACTCGGCCGATCCTCAGTTTGCGCATCCCACCCC-CATGG
387 AGGATCGG-CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTC-TGG
* * * *
17848449 CCGGCTAAGCACCCACACGCTCGTTTCGTGGGTTGACTCAGGCATACGGAGTTCATTCCCAGTCT
450 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T
*
17848514 AAGCATACGGAGTTCATTCCCAGTCTATGATCGGACCGGACCGAGGGTTGCAGCAGCACATGCTG
513 ---C-TA---AG--CA-T--C-G---A-GATC--A---GACCGAGGGTTGCGGCAGCACATGCTG
* * * *
17848579 GGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGTCAGGGCACCATCACCGGAGCATCGTCGGA
556 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGA
* * ** *
17848644 GAACCTGACCGACGACATTATGGTTCCGACGATCGGGGGG-TGGGGGGGTGTGCGCACATGATGT
621 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* *
17848708 GCAATGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
686 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
17848773 CACCCCCTTAAAAAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
751 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
17848838 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-T
816 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * *
17848897 TTTTTGTGCAAGCCACCAAAAATATAGGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CTTTC
1 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC
* * * *
17848961 CAAAAAATTTTAAAAAATCCTGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGT
66 GAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
* *
17849026 CGTCTTGCCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAA
131 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
*
17849091 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGG
196 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * *
17849156 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTACCCGCCCACCCGTCCGCTCGTTTTGTCAGTTG
261 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * **
17849221 GCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGA-CCGAACTGAGGGTTGTGGTAGCAGG
326 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAG-ACTGAGGGTTGCAGTAGCAGG
* * *
17849285 ACCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCGGC
390 ATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * *
17849350 TGAGCGCCCGTACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
455 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-
** *
17849415 TACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCTAGGGTTAAGGCAGCATATGCTGGGCTC
514 T--A-AG--CA-T--C-G----AGATCAGACC-G----AGGGTTGCGGCAGCACATGCTGGGCTC
* * * * *
17849480 GAGG-ATGTGCTAGTGCTGCATTTTTC-T--T--------CAT---CGAAGCATCGCGGGAGAAG
561 G-GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGAAC
* * * * *
17849530 CTGATCGGTGGCATTGGGGTTCTGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCA
625 CTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
* *
17849594 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTTATCAAACCTCGAGAACTCACAC
689 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
17849659 CCCCTTAAACAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGT
754 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
17849724 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGTTGAATT
819 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * ** * **
17849781 TTTTTGTGGATGCCAAAAAAAATAAAAGGATCACGTCTACCAAGTTTGGAACCAAAAATCCTCCC
1 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC
* * **
17849846 G-AAAAATTTTAAAAAATCCCGAACCGTAGAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGT
66 GAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
17849910 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
131 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * *
17849975 ATGGCATTGGCATGCACAAATATGAAGATGTGACTAAACCCACCTACCACCCTATCGATCCATGA
196 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
** * *
17850040 CTTGCGCATCCCGTCTCTCTGGCCAACGTAGT----GCCCGCCCGTCCGCTCGTTTCTTCGGTTG
261 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * * *
17850101 GCTTAGGCAT-CTGGAGTTCATTCTCCA-TCTAAGATCAGATCGGACTGAGGGTTACGGTAGCAA
326 GCTTAGGCATAC-GGAGTTCATTC-CCAGTCTAAGATCAGATCAGACTGAGGGTTGCAGTAGCAG
* * * *
17850164 GATCGGCAGCACGCAGAGGGGGACCCAATCGATCCTCGGCTCGCGCATCCCGCCCCTCTGGCCGG
389 GATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* *
17850229 CTGAGCGCCTGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-
454 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * * * * *
17850293 ATTG-GA-CTAGACTGAGGGTTGCGGTAGCACATACTGGGCTCGGGCATGTGCTGGTGTCACATT
519 ATCGAGATC-AGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
* ** * * *
17850356 TTTCTTCATCGGGGCACCATCGTCGGAGCATCACCGGAGATCCTGACCGACGGCATTGGGGTTCC
583 TTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCC
* * *
17850421 GGCGATCGGGGGGCCGGGGGGGTGTGCGTACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTA
648 GACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
* * *
17850486 TATT-GTCCCCTATCCCTCATCAAACGTCGAGAGCTCACACCCCCTTAAAGAGCATTTGAGATTT
713 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* * * *
17850550 TACAGGTTTGCTGTCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGACACA
778 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
*
17850615 AAATCTTGTACACTTCGAGTTTCTT-GGTGAATT
843 AAATCTTGTACACTTCGAGTTT-TTAGCTGAATT
* *
17850648 TTTTTGTGCACGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTAC
1 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC
* *
17850713 G-AAAAATTTTAAAAAATCCTGAACCA-AAAAATGTTTCAAAAATCATGAAAAATAGAAAACAAG
66 GAAAAAATTTTAAAAAATCCCGAACCATAAAAA-GTTTCAAAAATCATGAAAAATAGAAAACGAG
* *
17850776 TCCTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGGACCATTGTATGAATTTGCAAGCCATAA
130 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA-GGGACCATTGTATGAATTTACAAGCCATAA
*** * * ** *
17850841 AAATGGCATTGGCACATAGAAATATGAAAATGTGCCAAAACCCACCTACCACTTTATCGATTCAC
194 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * *
17850906 GGCTTGCGCATCCTGTCTCTCTGGTCGGCGTAGT--------GCCCGCCCGCTTGTTTTGTCGGT
259 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGT
* * * ** * *
17850963 TGGCTTAGACATACGAAGTTCGTTCCCAGTCTAAGATCAGATCAGACCAAGGGTTGC-GACAGTA
324 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACTGAGGGTTGCAG-TAGCA
* * * * * *
17851027 GGATCAGCAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTTTGGTCG
388 GGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * **
17851092 GCTGAGCGCCCGCATGCTCGTGTCGTGGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAAG
453 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
*
17851157 CATATGAAGTTCGTTTCTAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAACACATGCTGGGC
518 C------A-------TC--G----AGAT-----CAGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * **
17851222 TCGAGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCAT---C---G--T---CGGAGAA
559 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGAA
* **
17851276 CCTTACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCAAGGGGGTGTGCGCACATGATGTGC
624 CCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
* * **
17851341 GATGCGTGCTGGTACTTGGCCCTTAAATTGGCCCCCTATCCCTCATCAAACCTTAAGAACTCACA
688 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
17851406 CCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATG
753 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
17851471 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAACTAAATT
818 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * *
17851529 TTTTTATGCATGCCAAC-AAAATACAAGGATCACGTCTATCAAGTTTGGGACCAAAACTCCTTTT
1 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC
* * *
17851593 GAAAAAACTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT-AGTGAAAAATAGAAAATGAG
66 GAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCA-TGAAAAATAGAAAACGAG
* * * *
17851657 TCGTCTTGCCATGGAACTTCACATGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCACAAA
130 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * * * *
17851722 AATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACGACCCTATCAATCCATG
195 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * **
17851787 GCTTACGCATCCCGTCTCTCTAGTCGATGTAGTGCCCGCCCGCCCGCCCGCCCGCCCGCTCGTTT
260 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT--------GCCCGCCCGCCCGCCCGCTCGTTT
* * * * *
17851852 CATCGGTTGGCTTACGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-TAGAGGGTTGT
317 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACT-GAGGGTTGC
* * * ** * * * *
17851916 GGCAGCAGGATCGGCAGCATGCA-TTGGGGTCCCGACCGATCCCCGGGTTGCGCATCACACCCCT
381 AGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCT
* *
17851980 CTGGCCGGCTGAGCGCCCGCCCGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA
446 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* **
17852045 GTCTAAGCATACGCAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTGTGATAGCACAT
511 GTCTAAGCAT-CG-AG---------A-TC--AGA-C----C-G----AGGGTTGCGGCAGCACAT
* **
17852110 GCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCATTGGAGCATCGC
552 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGC
* * * * * * *
17852175 CAGAGAACCTGACTGACGGCATTCGGGTTCCGACGAT--------C-AGGGGTTGTGCACACATG
617 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATG
* *
17852231 ATGTGCGATGGGTGGTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAA
682 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
*
17852296 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTCTCT
747 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * *
17852361 GAAATGGGGAAACTTTTTTGAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATT
812 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * *
17852425 TTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAAATCCTTTC
1 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC
* * * * * *
17852490 GAAAAAATTTTAACAAACCCCGAGCCACAAAAAGTTTCAAAAATCATGAAAAATAGAGAACGGGT
66 GAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
* *
17852555 CGTCTTGCCATAAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
131 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * *
17852620 ATGGCACTGGCATGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCAATCC-CTG
196 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC-G
* * * *
17852684 CCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCTGCCCGCCTGCTTGCCCGTTCGTTTCGTC
260 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC--C--GCCCGCTCGTTTCGTC
* *
17852749 GGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGC-GATA
321 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACTGAGGGTTGCAG-TA
* * * **
17852813 GCAAGATCGGCAGCTCGTAGAGGGGGACCCGACCGATCCTGGGCTTGCGCATCCCGCCCCTCTGG
385 GCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * * * *
17852878 CTGGCTGAGCACCCGCACGCTCGTTTCGTTGATTGACTTAGGCATATGGAGTTCATTCCCAGTCT
450 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * *
17852943 ATG-ATTGA-A-CAGGACCGCGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCA
515 AAGCATCGAGATCA-GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * * ** *
17853005 CATTTTTCTTCGCCAGGGCACCATCGCCAAAGCATCGCCGGAGAACCTGACCGGCCGCATTGGGG
579 CATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGG
* *
17853070 TTCCGACGATCGGGGGG-C-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTTCTTGGTC
644 TTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
*
17853133 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTGAAAGAGCATTTGAG
709 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
* * * *
17853198 ATTTTACAGGTTTGCTGCCAGTTGCCGTTAAAGTGTTTGAAATGGGGAC-CTTTTTTTCAATTGG
774 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTTCAAATGG
*
17853262 TCACAAAATCTTGTACACTTCGAGGTTTTAGCTGAATT
838 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
*
17853300 TTTTTGTGCATGCCAA-AAAACATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTT
1 TTTTTGTGCATGCCAACAAAA-ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTT
* ** *
17853364 CGAAAAAATTTTAAAAAATCCCGCACCCCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGTG
65 CGAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
* *
17853429 TCTTCTTGCCATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
130 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * *
17853494 AATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCGACCACCCTATCGATCCACG
195 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * ** * * * *
17853559 GCTTGTGCATCTCGTCTCTTTGGCTAGCGTAGTGCCCACCCGTCTGCTTGCCCGCTCATTTCATC
260 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-C--C-CGCCCGCTCGTTTCGTC
** * * *
17853624 GGTTGGCTTAGGCATACGGAGTTCAAACTCAGTCTAAGATCAGACCAGA-TGAAGGGTTACAGTA
321 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACTG-AGGGTTGCAGTA
* * ** * * *
17853688 GCAGGATCGGCAGTACACAGAGGGGGACCCGACCGATCCTTGACTTGCTCATCTCGCCCCTCTGG
385 GCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* *
17853753 CCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCT
450 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T
* *
17853818 AACAATACAAAGTTCATTCCCAGTCTAAGATCGAACTAGATCGAGGGTTGCGGCTGCACATGCTG
513 --C--T---AAG--CA-T--C-G----AGAT----C-AGACCGAGGGTTGCGGCAGCACATGCTG
* * * * * *
17853883 GGCTCGAGCAAGTGCTGGTGCCGTATTTTTCTTTGTCGGGGCACCATCGCCGGAGCATTGCCGGA
556 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGA
* * * * * **
17853948 GAACCTGACAGGCCGCATTGGGCTTTCGACGAT--------TGGGGGGGTGTGCATACATGATGT
621 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGT
** *
17854005 ATGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTCGAGAACTCA
686 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
17854070 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGTCGTTAAAGTGTCTGAAA
751 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
17854135 TGGGGACACTTTTTTCAAATGGTCACAAAACCTTGTACACTTCGAGTTTTTAGCTGAATT
816 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* *
17854195 GTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACTAAGTTTGGGGCCAAAACTCCTTTC
1 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC
* * * *
17854260 GAAAAAATTTTAAAAAATCCTGAATCATAAAAAGTTTCGAAAATCATGAAACATAGAAAACGAGT
66 GAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
*
17854325 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAATCCATAAAA
131 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * *
17854390 ATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCTACCTACCACCCTATTGATCCACGG
196 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * ** * * *
17854455 CATGTGCATCCCGTCTCTCTGGCCAACGTAGTGCCCACCCGTCCGTCCGCTCGTTTCGTCGGTTG
261 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
** * * * *
17854520 GCCAAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTACATTAGCAGGA
326 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACTGAGGGTTGCAGTAGCAGGA
* ** * * * * * * *
17854585 TTGGCAAAACACAGAGTGGGACCTGGCCAATCCCCGACTTACGCATCCCGCCCCTCTGGCCGG-T
391 TCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * *
17854649 CGAGTGCCCACACGTTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-A
456 -GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * *
17854713 TCG-GATCAGACCGAGGGTT-CTGGTAGCAGATGCTGGGCTCGGGCATGTGCTGGTGCCACATTT
520 TCGAGATCAGACCGAGGGTTGC-GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
* *** * * * *
17854776 TACTTCGTAAAGGCACCATCACCGGAGCATCGCCGGAGAACCTGACCGGGGGCTTTGGGTTTCTG
584 TTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCG
* *
17854841 GCGATCGGGGAGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTA
649 ACGATCGGGG-GGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
** *
17854906 TATTTTCCCCCTATCCCTCATCAAACCTCGAGAACTCACAGCCCCTTAAAGAGCATTTGAGATTT
713 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* * *
17854971 TACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAGACCTTTTTCAAATGGTCACA
778 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* *
17855036 AAATCTTGCACACTTCGATTTTTTAGCTGAATT
843 AAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * **
17855069 TTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTCAC
1 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC
* **
17855134 -AAAATAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATA-AAAGACGA
66 GAAAA-AATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAA-ACGA
*
17855197 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTATGGGACCATTGTATGAATTTACAAGCCATAA
129 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * *
17855262 AAATGGCATTGGCATGCAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATGCAC
194 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * *
17855327 GGCTTGCGCATCCCGTCTCTCTGGCTGGTGTAGAGCCCGCCCGCCCACCAGCCCGCTCGTTTCAT
259 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG--C-CC-GCCCGCTCGTTTCGT
* * ** * * *
17855392 CGATTGGCTTAGGCATTCGGAGTTCATTCATAGTCTAAGATC-GAACCGAACTGAGGGTTGCAGC
320 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAG-ACTGAGGGTTGCAGT
* * *** * * *
17855456 AGCAGGATTGGTAGCACGCAGAGGGGGACCCGGTTGATCCACGGCTTGCGCATCCCACCACTCTG
384 AGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
* * *
17855521 GCCGGTTGAGCGCCCGCACGCTAGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTC
449 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
*
17855586 TAAGCATACAGAGTTCAATCCTAGTCTACAATCGGATCGGGCCGAGGGTTGCGGGAGCACATGCT
514 TAAGCAT-C-GAG---------A---T-C-A---GA-----CCGAGGGTTGCGGCAGCACATGCT
* * ***
17855651 AGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTTACCGGGG------CA-C----CATCGCCGG
555 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGG
* * *
17855705 AGAACCTGACCGGAGGCATTAGGGTTCCGGA-GATCGGGGGTACC-GGGGGGTGTGCGCACATGA
620 AGAACCTGACCGGCGGCATTGGGGTTCC-GACGATCGGGGG-GCCGGGGGGGTGTGCGCACATGA
*
17855768 TGTGCGATGGGAGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
683 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
17855833 TCACGCCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
748 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * * *
17855898 AAATGGGGGCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGTTGAACT
813 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * *
17855961 TTTTTGTGCAAGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTGC-TTC
1 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC
* * ** *
17856025 TGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCTTGAAAAATAGAAAACGAG
66 -GAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
* *
17856090 TCGTCTTGCCATGAAAGTTCACGTGAAGACTTAAGGGACCATTGTATGAATTTACAAGCCAT-AA
130 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * *
17856154 AATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCAGCTACCACCCTATCGATCCATG
195 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * *
17856219 GCTTGCACATCCCGTCTCTCTAGCCGGCGT-GTGCCCGCTCATCTGTCCGCCCACTCGTTTCGTC
260 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC-C--C-GCCCGCCCGCTCGTTTCGTC
* * * ** * * * *
17856283 GATTCGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTACGGTAG
321 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACTGAGGGTTGCAGTAG
* * * * * *
17856348 CAGGATCGACAGCCCGCAAAGGAGGACCCGACCGAACCCCGGCTTGCGCATCCCGCCCCTCTGGT
386 CAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * * *
17856413 CGGATGAGCGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTA
451 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
*
17856478 AGCATACGGAGTTCATTCCCAGTCTAGGATCGGACCGGACTGAGGGTTGCGGCAGCATATGCTGG
516 AGCAT-C-GAG---------A-TC----A---GA-C---C-GAGGGTTGCGGCAGCACATGCTGG
* * * ** ** *
17856543 GCTCGAGCATGTGCTGGAGCCTCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCAGAG
557 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAG
* * * **
17856608 AACCTGATCGGCAGTATTGGGGTT-CGACGATCGGTGGGG-CATGGGGGTGTGCGCACATGATGT
622 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGG-GGGGCCGGGGGGGTGTGCGCACATGATGT
* *
17856671 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAAAACTCA
686 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
17856736 CATCCCCTTAAAGAGTATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAA
751 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
17856801 TGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAAAT
816 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * * * *
17856861 TTTTTGTGCATACCAA-AAAAA-AAAAGGATCATGTCTACCAGGTTTGGGGCCAAAACACCTTCC
1 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC
* ** * *
17856924 GAAAAAATTTTAAAAAATCCCAAACCCCAAAAAGTTTCCAAAATCGTGAAAAATAGAAAACGAGT
66 GAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
*
17856989 CGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
131 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* *
17857054 ATGGCATTGGCA-CCCGAAAATATGAAGATGTGCCTAAA-CCACCTACCACCCTATCGATCCACG
196 ATGGCATTGGCATGCAG-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * **
17857117 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCGGCCCGCACGCCCACCCGCTCATTTAATC
260 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCGCCCGCCCGCCCGCTCGTTTCGTC
* * * * ** *
17857182 GATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATC-GTTCCAGGCCAAGGGTTGCGGTA
321 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAT-CAGACTGAGGGTTGCAGTA
* * * * * * * *
17857246 GCAGGATCAGTAGCACGCAAAGGGGGACCTGGCCGATCCCCGGCTTACGCATCCTGCTCCTCTGG
385 GCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * *
17857311 CCGGCTGAGCACCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCT
450 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * *
17857376 AAGCATACGGAGTTTATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCAGCAGCATATACTG
515 AAG----C-------A-T--C-G----AGATC--A---GACCGAGGGTTGCGGCAGCACATGCTG
* *
17857441 GGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGT--------CA--A----AGCATCGTCGGA
556 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGA
* ** *
17857492 GAACCTGACCGGTGGCATTGGGGTTCTAACGATCGGGAGGCCGAGGGGGGTGTGCGCACATGATG
621 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCG-GGGGGGTGTGCGCACATGATG
* * *
17857557 TGCGATGCGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTC
685 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * *
17857622 ACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTATCTAAA
750 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
17857687 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTGTTAGCTGAATT
815 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
17857748 TTTTTGTGCATGCCAACAAAAATACAAGGATCAC
1 TTTTTGTGCATGCCAACAAAAATACAAGGATCAC
17857782 ATCCACCATC
Statistics
Matches: 7670, Mismatches: 919, Indels: 600
0.83 0.10 0.07
Matches are distributed among these distances:
853 2 0.00
854 41 0.01
855 1 0.00
857 1 0.00
858 2 0.00
859 6 0.00
863 4 0.00
864 183 0.02
865 105 0.01
866 5 0.00
867 291 0.04
868 308 0.04
870 3 0.00
871 3 0.00
872 2 0.00
873 8 0.00
874 468 0.06
875 638 0.08
876 4 0.00
877 9 0.00
878 180 0.02
879 41 0.01
880 404 0.05
881 244 0.03
882 48 0.01
883 211 0.03
884 265 0.03
885 46 0.01
886 11 0.00
887 219 0.03
888 8 0.00
889 22 0.00
890 327 0.04
891 282 0.04
892 369 0.05
893 137 0.02
894 102 0.01
895 653 0.09
896 536 0.07
897 390 0.05
898 305 0.04
899 312 0.04
900 220 0.03
901 142 0.02
902 1 0.00
903 9 0.00
904 60 0.01
905 1 0.00
906 34 0.00
907 1 0.00
910 1 0.00
911 1 0.00
912 2 0.00
916 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (875 bp):
TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC
GAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACTGAGGGTTGCAGTAGCAGGA
TCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
CGAGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
CTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGAC
GATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
TCTTGTACACTTCGAGTTTTTAGCTGAATT
Found at i:17855592 original size:26 final size:26
Alignment explanation
Indices: 17855563--17855613 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17855553 GTTGACTTAG
*
17855563 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCAATCCCAGTCTAA
*
17855589 GCATACAGAGTTCAATCCTAGTCTA
1 GCATACAGAGTTCAATCCCAGTCTA
17855614 CAATCGGATC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCAATCCCAGTCTAA
Found at i:17855984 original size:892 final size:887
Alignment explanation
Indices: 17854685--17857780 Score: 4094
Period size: 892 Copynumber: 3.5 Consensus size: 887
17854675 GTTGACTTAG
* * *
17854685 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTT-CTGGTAGCAGATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAA-ATCGGATCGGACCGAGGGTTGC-GGCAGCATATGCTGG
* * ** **
17854749 GCTCGGGCATGTGCTGGTGCCACATTTTACTTCGTAAAGGCACCATCACCGGAGCATCGCCGGAG
64 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTT--TACCGG----GGCA-C----CATCGCCGGAG
* * *
17854814 AACCTGACCGGGGGCTTTGGGTTTCTGG-CGATCGGGGAGGCCGGGGGGGTGTGCGCACATGATG
118 AACCTGACCGGAGGCATTGGGGTTC-GGACGATCGGGG-GGCCGGGGGGGTGTGCGCACATGATG
* ** *
17854878 TGCGATGGGTGCTAGTACTTGGCCCTTATATTTTCCCCCTATCCCTCATCAAACCTCGAGAACTC
181 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
*
17854943 ACAGCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
246 ACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * *
17855008 ATGGGGAGACCTTTTTCAAATGGTCACAAAATCTTGCACACTTCGATTTTTTAGCTGAATTTTTT
311 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
17855073 TGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTCACAAAA
376 TGTGCAAGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTC-CAAAA
**
17855138 TAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATA-AAAGACGAGTCGT
440 -AATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAA-ACGAGTCGT
*
17855202 CTTGCCATGAAACTTCACGTGAAGGCTTATGGGACCATTGTATGAATTTACAAGCCATAAAAATG
503 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
17855267 GCATTGGCATGCAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATGCACGGCTT
568 GCATTGGCATGCAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
17855332 GCGCATCCCGTCTCTCTGGCTGGTGTAGAGCCCGCCCGCCCACCAGCCCGCTCGTTTCATCGATT
633 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC-CCAGCCCGCTCGTTTCATCGATT
* * ** * * *
17855397 GGCTTAGGCATTCGGAGTTCATTCATAGTCTAAGATCGAACCGAACTGAGGGTTGCAGCAGCAGG
697 GGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGAACCGAGGGTTGCGGTAGCAGG
* * ** * * *
17855462 ATTGGTAGCACGCAGAGGGGGACCCGGTTGATCCACGGCTTGCGCATCCCACCACTCTGGCCGGT
762 ATCGGTAGCACGCAAAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCC-CTCTGGCCGGA
*
17855527 TGAGCGCCCGCACGCTAGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
826 TGAGCGCCCGCATGCTAGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * * * * *
17855589 GCATACAGAGTTCAATCCTAGTCTACAATCGGATCGGGCCGAGGGTTGCGGGAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTA-AATCGGATCGGACCGAGGGTTGCGGCAGCATATGCTGGG
*
17855654 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTTACCGGGGCACCATCGCCGGAGAACCTGACCGGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTTACCGGGGCACCATCGCCGGAGAACCTGACCGGA
* * *
17855719 GGCATTAGGGTTCCGGA-GATCGGGGGTACC-GGGGGGTGTGCGCACATGATGTGCGATGGGAGC
130 GGCATTGGGGTT-CGGACGATCGGGGG-GCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* *
17855782 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACGCCCCCTTAA
193 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAA
*
17855847 AGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGGCACTT
258 AGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * *
17855912 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGTTGAACTTTTTTGTGCAAGCCAA
323 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAA
* * *
17855977 CAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTGCTTCTGAAAAAATTTTAAAAA
388 CAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAAT-CCTC-CAAAAAATTTTAAAAA
* ** * *
17856042 ATCCCAAACCGTAAAAAGTTTTGAAAATCTTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAG
451 ATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
*
17856107 TTCACGTGAAGACTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAATGGCATTGGCATGCA
516 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
* * * *
17856171 GAAATATGAAGATGTACCTAAACCCAGCTACCACCCTATCGATCCATGGCTTGCACATCCCGTCT
581 AAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* ** ** * * *
17856236 CTCTAGCCGGCGT-GTGCCCGCTCATCTGTCC-GCCCACTCGTTTCGTCGATTCGCTTAGGCATA
646 CTCTGGCCGGCGTAGTGCCCGC-CCGC-CCCCAGCCCGCTCGTTTCATCGATTGGCTTAGGCATA
* * * * * ** *
17856299 CAGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTACGGTAGCAGGATCGACAGCCCG
709 CAGAGTTCATTCCCAGTCTAAGATCGAACCGAACCGAGGGTTGCGGTAGCAGGATCGGTAGCACG
* * * *
17856364 CAAAGGAGGACCCGACCGAACCCCGGCTTGCGCATCCCGCCCCTCTGGTCGGATGAGCGCCCGCA
774 CAAAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCG-CCCTCTGGCCGGATGAGCGCCCGCA
* *
17856429 TGCTCA-TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
838 TGCT-AGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * *
17856479 GCATACGGAGTTCATTCCCAGTCTAGGATCGGACCGGACTGAGGGTTGCGGCAGCATATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTA-AATCGGATCGGACCGAGGGTTGCGGCAGCATATGCTGGG
* * * *
17856544 CTCGAGCATGTGCTGGAGCCTCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCAGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTTACCGGGGCACCA---TC---GC--CG---GAGA
* * **
17856609 ACCTGATCGGCA-GTATTGGGGTTC-GACGATCGGTGGGG-CATGGGGGTGTGCGCACATGATGT
119 ACCTGACCGG-AGGCATTGGGGTTCGGACGATCGG-GGGGCCGGGGGGGTGTGCGCACATGATGT
*
17856671 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAAAACTCA
182 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
* * * *
17856736 CATCCCCTTAAAGAGTATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAA
247 CACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
17856801 TGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAAATTTTTT
312 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
17856866 GTGCATA-CCAA-AAAAA-AAAAGGATCATGTCTACCAGGTTTGGGGCCAAAACA-CCTTCCGAA
377 GTGCA-AGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAA-ATCC-TCC-AA
* * *
17856927 AAAATTTTAAAAAATCCCAAACCCCAAAAAGTTTCCAAAATCGTGAAAAATAGAAAACGAGTCGT
438 AAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
*
17856992 CTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
503 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** * *
17857057 GCATTGGCACCCGAAAATATGAAGATGTGCCTAAA-CCACCTACCACCCTATCGATCCACGGCTT
568 GCATTGGCATGCAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
17857121 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCGGCCCGCACGCCCA-CCCGCTCATTTAATCGAT
633 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC-C-CCCAGCCCGCTCGTTTCATCGAT
** * *
17857185 TGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGTTCC-AGGCCAAGGGTTGCGGTAGCA
696 TGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGA-ACCGAGGGTTGCGGTAGCA
* * * *
17857249 GGATCAGTAGCACGCAAAGGGGGACCTGGCCGATCCCCGGCTTACGCATCCTGCTCCTCTGGCCG
760 GGATCGGTAGCACGCAAAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGC-CCTCTGGCCG
* * *
17857314 GCTGAGCACCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
824 GATGAGCGCCCGCATGCTAGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * *
17857378 GCATACGGAGTTTATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCAGCAGCATATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAA-ATCGGATCGGACCGAGGGTTGCGGCAGCATATGCTGGG
* **** * * *
17857443 CTCGGGCATGTGCTGGTGCCGTATTTTTC-TT--CGTCAAAGCATCGTCGGAGAACCTGACCGGT
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTTACCGGGGCACCATCGCCGGAGAACCTGACCGGA
** * *
17857505 GGCATTGGGGTTCTAACGATCGGGAGGCCGAGGGGGGTGTGCGCACATGATGTGCGATGCGTGCT
130 GGCATTGGGGTTCGGACGATCGGGGGGCCG-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
*
17857570 GGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAA
194 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAA
* * * * *
17857635 AAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTATCTAAAATGGGGACACTTT
259 GAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* *
17857700 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTGTTAGCTGAATTTTTTTGTGCATGCCAAC
324 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAAC
17857765 AAAAATACAAGGATCA
389 AAAAATACAAGGATCA
17857781 CATCCACCAT
Statistics
Matches: 1923, Mismatches: 224, Indels: 105
0.85 0.10 0.05
Matches are distributed among these distances:
885 27 0.01
886 9 0.00
887 213 0.11
888 7 0.00
889 9 0.00
890 276 0.14
891 96 0.05
892 363 0.19
893 57 0.03
894 1 0.00
896 7 0.00
897 2 0.00
898 210 0.11
899 314 0.16
900 218 0.11
901 26 0.01
902 5 0.00
904 81 0.04
905 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (887 bp):
GCATACGGAGTTCATTCCCAGTCTAAATCGGATCGGACCGAGGGTTGCGGCAGCATATGCTGGGC
TCGGGCATGTGCTGGTGCCGCATTTTTCTTTACCGGGGCACCATCGCCGGAGAACCTGACCGGAG
GCATTGGGGTTCGGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGA
GCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAACAA
AAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTCCAAAAAATTTTAAAAAATCCC
AAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAAT
ATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
GCCGGCGTAGTGCCCGCCCGCCCCCAGCCCGCTCGTTTCATCGATTGGCTTAGGCATACAGAGTT
CATTCCCAGTCTAAGATCGAACCGAACCGAGGGTTGCGGTAGCAGGATCGGTAGCACGCAAAGGG
GGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCTCTGGCCGGATGAGCGCCCGCATGCTAGTT
TCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
Found at i:17856482 original size:26 final size:26
Alignment explanation
Indices: 17856453--17856503 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17856443 GTTGACTTAG
*
17856453 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17856479 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
17856504 GGATCGGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17857381 original size:26 final size:26
Alignment explanation
Indices: 17857352--17857404 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17857342 GTTGACTTAG
17857352 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
17857378 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17857404 G
1 G
17857405 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17858703 original size:26 final size:26
Alignment explanation
Indices: 17858674--17858726 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17858664 GTTGACTTAG
17858674 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
17858700 GCATATGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17858726 G
1 G
17858727 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17860046 original size:891 final size:893
Alignment explanation
Indices: 17857977--17860403 Score: 3342
Period size: 891 Copynumber: 2.7 Consensus size: 893
17857967 GACGATTGGA
* * * * * *
17857977 GGGGTGTGCATACATGATGTGTGATGGGTGTTGGTACTTGGCCCTTATATTGTCCCCTTATCACT
1 GGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* * *
17858042 CATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGT
66 CATCAAACCTCGAGAACTCACACCCCCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* * * *
17858107 AGCCTTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGATCACAAAATCATGTACACTTTGA
131 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGA
* *
17858172 TTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGG
196 GTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGG
** * *
17858237 GAAAAAATGCC-TTCTAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTTGAAAATCGTGG
261 CCAAAAAT-CCTTTCGAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTTGAAAATCGTGA
*
17858301 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACTTGAAGGCTTAAGGGACCATTGTATGAA
325 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* ** **
17858366 TTTACAAGCCATAAAAATGGTATT-GCACACAGAAATATGAAGATGTGCCTAAA-CTGCCTACCA
390 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * ** *
17858429 CCCTATCGATCCA-TGGCTTGCACATCCCGTCTTTCTAGCCGGTTTAGTGCCTG-C-CT-GCCCG
455 CCCTATCGATCCACT-GCTTGCGCATCCCGTCTCTCTAGCCGGCATAGTGCCCGCCGCTCGCCCG
* * * * *
17858490 CCCGTTTATTTCTTCGGTTGGCTTAGGCATACGGAGTTCATTCTCAGTCTAAGATCAGACCGGAC
519 CCAGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC
** * * * * ** *
17858555 CAAAGGTTGTGGCAGTAGAATCGGTAGCATGCAGAGGGGGACCCAGCCGATCCCCGGCTTGCACA
584 TGAAGGTTGCGGTAGCAGGATCGGTAGCACACAGAGGGGGACCGA-CCGATCCCCGGCTTGCACA
* * *
17858620 TCCCGCCCCTCTGGCCAGCTGACGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
648 TCCCGCCCCTCTGGCCAGCTGACACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGT
* * * * *
17858685 TCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTTTAAGATCGGACTGGATCGAGGGTTACG
713 TCATTCCCAGTCTAAGCATATGAAGTTCATTCCCAATATAAGATCGGACTGGACCAAGGGTTACG
** * * *
17858750 GTAGCCCATGCTGGGCTCTGACATGTGCTGGTGCCACTTTTTTCTTCGTCAGGGCACCATCGCAG
778 ACAACACATGCTGGGCTCGGACATGTGCTGGTGCCACTTTTTTCTTCGTCAGGG------CGCA-
* **
17858815 GAGCATCGTCGGAGAAGCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGACCGG
836 GAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCAACGATCGGGGGGACCGG
* *
17858873 GGGGTGTGCACACATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTACCCCT
1 GGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
*
17858938 CATCAAACCTTGAGAACTCACACCCCCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
66 CATCAAACCTCGAGAACTCACACCCCCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
17859003 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGA
131 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGA
* * *
17859068 GTTTTTAGCTGAATTCTTTTGTGCATGCCAAAAAAAATACAAGGATCACACCTACCATGTTTGGG
196 GTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTT-GG
* * * * *
17859133 GCCAAAAATCCTTCCG-AAAAAATTTTAAAAAATCTCAAACTGCAAAAAG-TTTCAGAAATCATG
260 GCCAAAAATCCTTTCGAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTTGA-AAATCGTG
17859196 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
324 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
17859261 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
389 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* *
17859326 ACCCTATCAATCCACTGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCTGCTCGCCC
454 ACCCTATCGATCCACTGCTTGCGCATCCCGTCTCTCTAGCCGGCATAGTGCCCGCC-GCTCGCCC
* * * * * * ** *
17859391 GCCAGCTCATTTCGTCGATCGGCTTTGGTATACGAAGTTCATTCCCAGTCCAAGATTGGACCGGG
518 GCCAGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
* * * * * * * *
17859456 TTGAGGGTTGCGATAGCAGGATTGGCAGCACACATAGTGGGACCTGACCGATCCCCGGCTTGCGC
583 CTGAAGGTTGCGGTAGCAGGATCGGTAGCACACAGAGGGGGACC-GACCGATCCCCGGCTTGCAC
* * * * * *
17859521 ATCTCGCCCCTTTTGCCGGCTGAGCACCCGCACGCTCATTTTGTGGGTTGACTTAGGCGTACGGA
647 ATCCCGCCCCTCTGGCCAGCTGA-CACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGA
17859586 GTTCATTCCCAGTCTAAGCATATGAAGTTCATTCCCAATATAAGATCGGA-TCGGACCAAGGGTT
711 GTTCATTCCCAGTCTAAGCATATGAAGTTCATTCCCAATATAAGATCGGACT-GGACCAAGGGTT
* * * * * *
17859650 GCGACAACATATGCTGGGCTCGGGCATGTGCTGGTGTC-GTATTTTTCTTCG-CCGGG-GCA-A-
775 ACGACAACACATGCTGGGCTCGGACATGTGCTGGTGCCACT-TTTTTCTTCGTCAGGGCGCAGAG
* ** * * *
17859710 CATCGTCGGGGAACCTGACCGGTGGCATTGGGGTTCTAATGATCGGGGGGGCCGG
839 CATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCAACGATCGGGGGGACCGG
* *
17859765 GGGGTGTGCGCACATGATGTG-GATGGGTGGTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
1 GGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* *
17859829 CATCAAACCTCGAGAACTCACACCCCCTGAAAAAGCATTTGAGATTTTACAGGTTTGCTACCAGT
66 CATCAAACCTCGAGAACTCACACCCCCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
*
17859894 AGCCATTAAAGT-TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
131 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGA
* * *
17859958 GTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACATGGATCACATCTACCAAGTTTACG
196 GTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTT-GG
* * * *
17860023 GTCAAAACTCCTTTCGAAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTTGAAAATCGTGA
260 GCCAAAAATCCTTTCGAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTTGAAAATCGTGA
*
17860088 AAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
325 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* *
17860153 TTTAAAAGCCATAAAAATGGCATTGGCATGCAGAAATAAGAAGATGTGCCTAAACCCACCTACCA
390 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * * * * *
17860218 CCCTATCGATCCACAGCTTGTGCATCCCGTCTCTCTAGTCGACGTAATGCCCGCCCGCCCGCCCG
455 CCCTATCGATCCACTGCTTGCGCATCCCGTCTCTCTAGCCGGCATAGTGCCCG-CCGCTCGCCCG
*
17860283 CCCA-CTCATTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
519 -CCAGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
* *
17860347 CTGAAGGTTACGGTAGCAGGATCGGTAGCACACAGAGGGGGACCCGGCCGATCCCCG
583 CTGAAGGTTGCGGTAGCAGGATCGGTAGCACACAGAGGGGGA-CCGACCGATCCCCG
17860404 AGATGCACGC
Statistics
Matches: 1349, Mismatches: 163, Indels: 43
0.87 0.10 0.03
Matches are distributed among these distances:
890 122 0.09
891 426 0.32
892 77 0.06
893 1 0.00
895 7 0.01
896 363 0.27
897 38 0.03
898 52 0.04
899 2 0.00
901 2 0.00
902 126 0.09
903 133 0.10
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (893 bp):
GGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
CATCAAACCTCGAGAACTCACACCCCCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGA
GTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGG
CCAAAAATCCTTTCGAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTTGAAAATCGTGAA
AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
CCTATCGATCCACTGCTTGCGCATCCCGTCTCTCTAGCCGGCATAGTGCCCGCCGCTCGCCCGCC
AGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTG
AAGGTTGCGGTAGCAGGATCGGTAGCACACAGAGGGGGACCGACCGATCCCCGGCTTGCACATCC
CGCCCCTCTGGCCAGCTGACACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCA
TTCCCAGTCTAAGCATATGAAGTTCATTCCCAATATAAGATCGGACTGGACCAAGGGTTACGACA
ACACATGCTGGGCTCGGACATGTGCTGGTGCCACTTTTTTCTTCGTCAGGGCGCAGAGCATCGTC
GGAGAACCTGACCGACGGCATTGGGGTTCCAACGATCGGGGGGACCGG
Found at i:17860465 original size:26 final size:26
Alignment explanation
Indices: 17860435--17860487 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17860425 GTTGACTTAG
17860435 GCATACGGAGTTCATTACC-AGTCTAA
1 GCATACGGAGTTCATT-CCTAGTCTAA
17860461 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
17860487 G
1 G
17860488 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 2 0.08
26 24 0.92
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:17860841 original size:220 final size:221
Alignment explanation
Indices: 17860458--17860900 Score: 593
Period size: 220 Copynumber: 2.0 Consensus size: 221
17860448 ATTACCAGTC
* *
17860458 TAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGCTGCGGCAGCACATGCT
1 TAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGCTGCGGCAGCACATGCT
* *** * ** * *
17860523 AGGCTCAGGCATGTGCTGGTGTTGCATTTTTCTTCGTCGGGGCACCGTTGCTGGAGCATCACCAG
66 AGGCTCAGGCATGTGCTAGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGAAGCATCACCAG
* ** *
17860588 AGAGCCTCACCGGTGGCATTGGGGTTCCGACGATCGGTGGGGCAGGGGGGTGTACGCACATGATG
131 AGAACCTCACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCAGGGGGGTGTACGCACATGATG
*
17860653 TGCGATGGGTGCTGGTACTTGGCCCT
196 TGCGATGGGTGCTAGTACTTGGCCCT
* * * *
17860679 TAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGACCGA-TGCTGCGGTAGCACATGCT
1 TAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGCTGCGGCAGCACATGCT
* * ** *
17860743 GGGCTC-GAGCATGTGCTAGTGCCACATTTTTCTTCGTTGGGGCACCATCACCGAAGCATCGTCG
66 AGGCTCAG-GCATGTGCTAGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGAAGCATCACCA
* * * * *
17860807 GAGAACCTGACCGACGGTATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGAT
130 GAGAACCTCACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCAGGGGGGTGTACGCACATGAT
17860872 GTGCGATGGGTGCTAGTACTTGGCCCT
195 GTGCGATGGGTGCTAGTACTTGGCCCT
17860899 TA
1 TA
17860901 TATTGGCCCC
Statistics
Matches: 191, Mismatches: 30, Indels: 3
0.85 0.13 0.01
Matches are distributed among these distances:
219 1 0.01
220 149 0.78
221 41 0.21
ACGTcount: A:0.19, C:0.24, G:0.34, T:0.24
Consensus pattern (221 bp):
TAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGCTGCGGCAGCACATGCT
AGGCTCAGGCATGTGCTAGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGAAGCATCACCAG
AGAACCTCACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCAGGGGGGTGTACGCACATGATG
TGCGATGGGTGCTAGTACTTGGCCCT
Found at i:17862119 original size:220 final size:219
Alignment explanation
Indices: 17861592--17862238 Score: 861
Period size: 220 Copynumber: 2.9 Consensus size: 219
17861582 AAGCATATGG
* * **
17861592 AGTTTATTCCCAGTCTAAGATCGGACCAGATCAAGGGCTGCGGTAGCACATGCTAGGCTCGGGCA
1 AGTTTATTCCCAGTCTAAGATCGAACCAGATCAAGGGCTGCGGTAGCACATGCTGGGCTCAAGCA
* * ** * * * *
17861657 TGTGCTGGTGTCGCATTTTTCTTCGCCGGGGCACCGTCGCTGGAGCATCACCAGAGAGCCTCACC
66 TGTGCTGGTGCCACATTTTTCTTCGTTGGGGCACCATCACTGGAGCATCACCAGAGAACCTGACC
* * *
17861722 GGTGGCATTGGGG-TTCCGACGATCGGTGGGG-CAGGGGGTGTGCGCACATGATGTGCGATGGGT
131 GGTGGCATTGGGGTTTCTG-CGATCGG-GGGGCCGGGGGGTGTACGCACATGATGTGCGATGGGT
*
17861785 GCTGGTACTTGGCCCTTAGGCATACGA
194 GCTGGTACTTAG-CCTTAGGCATACGA
* * * * * **
17861812 AGTTCATTCACAGTCTAAGATC-AGATCAGATCGA-CGCTGCGACAGCACATGCTGGGCTCAAGC
1 AGTTTATTCCCAGTCTAAGATCGA-ACCAGATCAAGGGCTGCGGTAGCACATGCTGGGCTCAAGC
* * *
17861875 ATGTGCTCGTGCCACATTTTTCTTCGTTGGGGCACCATCACTGGAGCATCGCCAGAGAACTTGAC
65 ATGTGCTGGTGCCACATTTTTCTTCGTTGGGGCACCATCACTGGAGCATCACCAGAGAACCTGAC
*
17861940 CGGTGGCATTGGGGTTTCTGCGATCGAGGGGGCCGGGGGGTGTACGCACATGATGTGCGATTGGT
130 CGGTGGCATTGGGGTTTCTGCGATCG-GGGGGCCGGGGGGTGTACGCACATGATGTGCGATGGGT
*
17862005 GCTGGTACTTAGCCTTAGGCATGCGA
194 GCTGGTACTTAGCCTTAGGCATACGA
* *
17862031 AGTTTTTTCCCAGTCTAAGATCGAACCAGACCAAGGGCTGCGGTAGCACATGCTGGGCTCAAGCA
1 AGTTTATTCCCAGTCTAAGATCGAACCAGATCAAGGGCTGCGGTAGCACATGCTGGGCTCAAGCA
** *
17862096 TGTGCTGGTGCCACATTTTTCTTCGTTGGGGCACCATCACCAGAGCATCACCGGAGAACCTGACC
66 TGTGCTGGTGCCACATTTTTCTTCGTTGGGGCACCATCACTGGAGCATCACCAGAGAACCTGACC
* * * * *
17862161 AGTGGCATTAGGGTTCCTGCGATCGGGGGGCCGAAGGGGTGTACGCACTTGATGTGCGATGGGTG
131 GGTGGCATTGGGGTTTCTGCGATCGGGGGGCCG-GGGGGTGTACGCACATGATGTGCGATGGGTG
*
17862226 CTAGTACTTAGCC
195 CTGGTACTTAGCC
17862239 CTTATATTGG
Statistics
Matches: 370, Mismatches: 50, Indels: 14
0.85 0.12 0.03
Matches are distributed among these distances:
219 148 0.40
220 222 0.60
ACGTcount: A:0.19, C:0.24, G:0.32, T:0.24
Consensus pattern (219 bp):
AGTTTATTCCCAGTCTAAGATCGAACCAGATCAAGGGCTGCGGTAGCACATGCTGGGCTCAAGCA
TGTGCTGGTGCCACATTTTTCTTCGTTGGGGCACCATCACTGGAGCATCACCAGAGAACCTGACC
GGTGGCATTGGGGTTTCTGCGATCGGGGGGCCGGGGGGTGTACGCACATGATGTGCGATGGGTGC
TGGTACTTAGCCTTAGGCATACGA
Found at i:17862584 original size:26 final size:26
Alignment explanation
Indices: 17862554--17862606 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17862544 GTTGACTTAG
*
17862554 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17862580 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17862606 G
1 G
17862607 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17865369 original size:873 final size:872
Alignment explanation
Indices: 17863523--17869485 Score: 7576
Period size: 873 Copynumber: 6.8 Consensus size: 872
17863513 CCCAATCTAA
* * *
17863523 GCATACGGAGTTCATTCCCACTCTAAGATCGGATCGAAA-CGAGGGTTGCGGCAGCACATGCT-G
1 GCATACGGAGTTCATTCCCAATGTAAGATCGGATCGAAACCGAGGGTTGCAGCAGCACATGCTAG
* * * **
17863586 CGCTCGGGCATGTGCTGGTGCCGCATTTGTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGA
66 -GCTCAGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGA
* ** * * *
17863651 GAACCTGACTGACTACATTAGGGTTCCGACGATCGGGGGGCTGGGGGGTGTGCGCCCATGATGTA
130 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCTGGGGGGTGTGCGCACATGATGTG
* * *
17863716 CGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTTGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
17863781 -ACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAA
260 AACCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
17863845 TGGGGACACTTTTTTCAAATTGT--CAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * *
17863908 GTGCATGCCAAAAAAAATACCAGGACCATGTCTACCAAGTTAGGGGCCAAAGCTCCTTCCAAAAA
389 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* *
17863973 AATTTTAAGAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCT
454 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * *
17864038 CGCCATGAACCTTCACGTGAAGGCTTAAGGGGCCATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * ***
17864103 ATTGGTATGCTGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATAACTTGC
584 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
17864168 GCATCCCGTCTCTCTGACCGACGTAGTGCCCGCTCGCCTGCCCGCTTGTTTTGTCAGTTGGCTTA
649 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGC-CGCCTACCCGCTCGTTTCGTCAGTTGGCTTA
* * *
17864233 GGCATACGGAGTTCATTCCCAACCTAAGAT-TGAACCGGACCAAGGGTTGCGGTAGCAGGATCGG
713 GGCATACGGAGTTCATTCCCAATCTAAGATCAG-ACCAGACCAAGGGTTGCGGTAGCAGGATCGG
* ** * * * * * * *
17864297 TAGCACATAGAAGGGGACCCGGCCGATCCTCGGCTTGCGCATCCCGCCCCTTTAGGCGACTGAGC
777 CAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGGCGGCTGAGC
17864362 GCCCGCACGCTCGTTTCGTGGGTTGACTTAG
842 GCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
17864393 GCATACGGAGTTCATTCCTAATGTAAAATCGGATCG-AACCGAGGGTTGCACCAGCACATGCTAG
1 GCATACGGAGTTCATTCCCAATGTAAGATCGGATCGAAACCGAGGGTTGCAGCAGCACATGCTAG
* * *
17864457 GATCAGGCATGTGCTGGTACCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCAGAG
66 GCTCAGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAG
* * *
17864522 AACTTGACCGATGGCATTGGGGTTCCGGCGATCGAGGGGGCTGGGGGGTGTGCGCACATGATGTG
131 AACCTGACCGACGGCATTGGGGTTCCGACGATCG-GGGGGCTGGGGGGTGTGCGCACATGATGTG
* *
17864587 CGATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * * *
17864652 AACCCCTTAAAGAGAATTTGAGATTTTCCACGTTTTCTGCAAGTAGCCATTAAAGTGTCTGAAAT
260 AACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
17864717 GGGGACACTTTTTTCAAATGTTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
17864782 TGCATGCCAACAAAAATACAAGGATCTTGTCTACCAAGTCTGGGGCTAAAAATCCTTCCAAAAAA
390 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
** * *
17864847 ATTTTAAAAAATCCCGAACCCAAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTT
455 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
17864912 GCCATGAAACTTCACGTGAAGGCTTAAGGGGCCATTATATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * ***
17864977 TTGGTATGCTGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCATAACTTGCG
585 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
17865042 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCTCGCCTACCCGCTTGTTTCGTTAGTTGGCTTAG
650 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGC-CGCCTACCCGCTCGTTTCGTCAGTTGGCTTAG
* ** *
17865107 GCATACGGAGTTCATTCCCAACCTAAGATC-GAACTGGACCAAGGGTTGCGGTAGCAGGATCGGT
714 GCATACGGAGTTCATTCCCAATCTAAGATCAG-ACCAGACCAAGGGTTGCGGTAGCAGGATCGGC
* ** * **
17865171 AGCACGTAGAGGGGGACCCGGTCGATCCTTGGCTTGCGCATCTTGCCCCTCTGGGCAACTGAGCG
778 AGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGGCGGCTGAGCG
17865236 CCCGCACGCTCGTTTCGTGGGTTGACTTAG
843 CCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
17865266 GCATACGAAGTTCATTCCCAATGTAAGATCGGATC-AAACCGAGGGTTGCACCAGCACATGCTAG
1 GCATACGGAGTTCATTCCCAATGTAAGATCGGATCGAAACCGAGGGTTGCAGCAGCACATGCTAG
* * *
17865330 GATCAGGCATGTGCTGGTACCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCAGAG
66 GCTCAGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAG
* ** **
17865395 AACTTGACCGGTGGCATTGGGGTTCCGGTGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTG
131 AACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCTGGGGGGTGTGCGCACATGATGTG
* *
17865460 CGATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAATCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
17865525 AACCCCTTAAAGAGAATTTGAGATTTTCCACGTTTTCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 AACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
17865590 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
17865655 TGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTCTGGGGCTAAAAATCCTTCCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
17865720 ATTTTAAAAAATCCCGAACCGAAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTT
455 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
17865785 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
17865850 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
585 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
17865915 CATCCCGTCTCTCTGGCCGACGTAGTCCCCACCTGCCTGCCCGCCCACTCGTTTCGTCGGTTGGC
650 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC-GCCTACCCG----CTCGTTTCGTCAGTTGGC
* ** ** * *
17865980 TTAGGCATACGAAGTTCATTCCCAATCTAAGATCAGACTGGA-TGA-GGTTGGGGT-GTAGGATC
710 TTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCAAGGGTTGCGGTAGCAGGATC
* *
17866042 GGCAGCATGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGA
775 GGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGGCGGCTGA
** * *
17866107 GCGCATGCACGTTCATTTCGTGGGTTGACTTAG
840 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
17866140 GCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCTAGCCTAAGATCGGACCTGAT
1 GCATACGGAGTTCATTCCCA----ATG--TA---AG---A-T-C--G-----GATC-GA---AAC
* * *
17866205 CGAGGGTTGCAGCAGCACATGCTAGGCTCGGGCAAGTG-TCGGTGCCGTATTTTTCTTCATCGGG
41 CGAGGGTTGCAGCAGCACATGCTAGGCTCAGGCATGTGCT-GGTGCCGTATTTTTCTTCGTCGGG
* * * *
17866269 GCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGACATTGGGGTTTCGTCGATCGGGGGG
105 GCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGG
* *
17866334 GCCGGGGAGGGTGTGCGCACATTGATGTGCGATTGGGTGCTGGTAATTGGCCCTTATATTGGCCC
169 G-CTGGG-GGGTGTGCGCACA-TGATGTGCGA-TGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* *
17866399 CCTATCCCTCATCAAA-CTCAAGAACTCA-AACCAGCTTAAAGAGCATTTGAGATTTTACAGGTT
230 CCTATCCCTCATCAAACCTCGAGAACTCACAACC-CCTTAAAGAGCATTTGAGATTTTACAGGTT
* * * *
17866462 TGCTACCAGTAGCCATTAAAGTGTTTGTAATGGGGACACTTTTTTCAAATCGTCACAAAATCTTG
294 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * * * *
17866527 TACACTTCAAGTTTTTAGTTGAATTTTTTTATACATGCCAA-AAATAATACAAGGATCAAGTCTA
359 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA-AATACAAGGATCATGTCTA
* * * * * * * **
17866591 CCAAATTTGGGGCCAAAAATCTTTCCAAAAAAATTTTAAAAAATTCCAAACCGTAAAAGGTTTTG
423 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCA
*
17866656 AAAATTATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
488 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* **
17866721 ATTGTGTGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAAC
553 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
17866786 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-AGCGTAGTGCCCG-
618 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCGC
* * * * * * *
17866849 C-CC-ACCTGCTCGTTTCATCGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATGAGA
682 CGCCTACCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGA
** * * * * * *
17866912 CCAGACTGAGGGTTGTGGCAGCATGATCGGTAGCACGTAGAGGGGGACCCGGTCGATCCCTGGCT
747 CCAGACCAAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCT
* ** * * *
17866977 TACGCATCCCACCCCTCTGGTCGGCTGAGCGCCCCCATGCTCGTTTCGTGGGTTGACTTAG
812 TGCGCATCCTGCCCCTCTGGGCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * *
17867038 GCATACGAAGTTCATTCCTAGTCTAAACGTAGGGAGTTCATTCCCAGTCTAAGATTGGACCGGAC
1 GCATACGGAGTTCATTCC----C--AATGTA---AG---A-T--C-G-----GA-TCGA---AAC
* * * * * * * ** *
17867103 CAAGGGTTGTAGAATCACAGGCTGGGCTCGGGCATGTGCTGGTGCCAAATTTTTCTTCGTCGGGC
41 CGAGGGTTGCAGCAGCACATGCTAGGCTCAGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGG
* * * * *
17867168 CACCATCATCGGAGCTTCACCGGAGAACCTGACCGACGGCATTGAGGTTTCGACGATCGAGGGGG
106 CACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC--GGGGG
* * *
17867233 GCCGGAGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTC
169 G-C--TGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* * *
17867298 CTATCCCTCATCAAACCTCGAGATCTCACACCCCCTTAAAGAGCATTTGAGATTTTAAAGGTTTG
231 CTATCCCTCATCAAACCTCGAGAACTCACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
*
17867363 CTGCCAGTA-CCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
296 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * * * *
17867427 CACTTCGAGTTTTT-TCTTGAATCTTCTTGTGCATGCCAACAAAAATAGAAGGATCATGTTTACC
361 CACTTCGAGTTTTTAGC-TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACC
* *
17867491 AAGTTTGGAGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT--C---TCG----AA---TC---
425 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAA
*
17867541 -A-C-----AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCAT
490 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* *
17867599 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAGAAATATGAAGATGTGGCTAAACCC
555 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
* * *
17867664 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTTTCTCTGGCCGGCGTAGTACCCGCCGC
620 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG-C-C
** * * *
17867729 GCCCGCCCGCTCATTTCGTCAGTTGGCTTAGGCATACGGAGTCCATTCCCAGTCTAAGATCAGAC
683 GCCTACCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGAC
* * * * * **
17867794 CAGATCAAGGGTTGCAGTAGCAAGATCGGCAGAATTGCAGAAGGGGGACCCGACCGGATCCCCGG
748 CAGACCAAGGGTTGCGGTAGCAGGATCGGCAGCA-CGCAG-AGGGGGACCCGGTC-GATCCCCGG
* * * * * *
17867859 CTTG-GCATGCTGTCCCTCCTGGCCGGCTGAGAGCCCGCACGC-CGTTTCATGGGTTAACTTAG
810 CTTGCGCATCCTGCCCCT-CTGGGCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
17867921 GCATAACGGAGTTCATGTCCCACAGTCTAAGCATATGGAGTTCATTCCCAGTTAAGATCGGACTC
1 GCAT-ACGGAGTTCAT-TCCCA-A---T--G--TA---AG---A-T--C-G----GATC-GA---
* * * *
17867986 AGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGTCGTATTTTTCTTCATC
38 A-ACCGAGGGTTGCAGCAGCACATGCTAGGCTCAGGCATGTGCTGGTGCCGTATTTTTCTTCGTC
* * * * * *
17868051 GGGGCACCATCGCCGAAGCATC-TCAGGAGAACCTGATCGGCGGCTTTGGGGTTCCGGCGATCGG
102 GGGGCACCATCGTCGGAGCATCATC-GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGG
* * *
17868115 GGGTC-CGGGGGCGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG-CCTTATATTGG-CCC
166 GGGGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
*
17868177 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
231 CTATCCCTCATCAAACCTCGAGAACTCACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
17868242 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
296 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* *
17868307 CACTTCGAGTTCTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
361 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCA
* *
17868372 AGTTTGGGGCCAAAACTCCTTCCGAAAGAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAA
426 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAA
*
17868437 ATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
491 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
** *
17868502 GTATGAATTTACAAGCCATAAAAATTTCATTGGCATGCAGAAATATGAAGATGTGCCTAAA-CCG
556 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
** * **
17868566 CCTACCACCCTATCGATCCATAGCTTGCGCATCCCGTCTCTTTGGCCGGTGTAGTTCCCGCCCGC
621 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAG-T---GCCCGC
* * * * *
17868631 CGCCCACCCGTTCGTTTCGTC-GTTGGCTTTGGCATATGGAGTTCATTCCCAGTCTAAGATCAGA
682 CGCCTACCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGA
* ** * * *
17868695 CCAAACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCTGGCT
747 CCAGACCAAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCT
* * *
17868760 TGCGCATCCTGCCCCTCT-GGCTGGCTGAGAGCCCGCACGCTCGTTTCATGGGTTAACTTAG
812 TGCGCATCCTGCCCCTCTGGGC-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * * * * *
17868821 GCATACGGAGTTCATTCCTAGTCTAAGATC-GAACCAAACCGAGGGTTACGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAATGTAAGATCGGATCGAAACCGAGGGTTGCAGCAGCACATGCTAG
* * *
17868885 GCTC-GGCCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATCGCCGGAGCATCATCGGA
66 GCTCAGG-CATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGA
* *
17868949 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGTGCCGGGGGGTGTGCGCACATGATGTG
130 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCTGGGGGGTGTGCGCACATGATGTG
17869014 CGATGGGTGCTGGTACTTGG-CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
17869078 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 AACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
17869143 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTTAGCTGAATTTTTTTA
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
17869208 TGCATGCCAACAAAAATATAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
*
17869273 ATTTTAAAAAAT-CCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
455 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
17869337 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
17869402 TTGGCACGTAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACG
585 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
17869467 CATCCCGTCTCTCTGGCCG
650 CATCCCGTCTCTCTGGCCG
17869486 GGGTANNNNN
Statistics
Matches: 4550, Mismatches: 416, Indels: 252
0.87 0.08 0.05
Matches are distributed among these distances:
869 4 0.00
870 251 0.06
871 357 0.08
872 288 0.06
873 1154 0.25
874 113 0.02
875 11 0.00
876 174 0.04
877 53 0.01
878 3 0.00
879 76 0.02
880 165 0.04
881 120 0.03
882 4 0.00
883 46 0.01
884 43 0.01
885 12 0.00
886 11 0.00
887 120 0.03
888 1 0.00
889 3 0.00
890 3 0.00
892 2 0.00
893 2 0.00
894 1 0.00
895 58 0.01
896 5 0.00
897 9 0.00
898 427 0.09
899 120 0.03
900 181 0.04
901 62 0.01
902 203 0.04
903 416 0.09
904 48 0.01
905 4 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (872 bp):
GCATACGGAGTTCATTCCCAATGTAAGATCGGATCGAAACCGAGGGTTGCAGCAGCACATGCTAG
GCTCAGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAG
AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCTGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
ACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCGCCTACCCGCTCGTTTCGTCAGTTGGCTTAGGC
ATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCAAGGGTTGCGGTAGCAGGATCGGCAGC
ACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGGCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:17866176 original size:26 final size:26
Alignment explanation
Indices: 17866140--17866192 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17866130 GTTGACTTAG
*
17866140 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
* *
17866166 GCATATGGAGTTCATTCCTAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
17866192 G
1 G
17866193 ATCGGACCTG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:17867417 original size:898 final size:894
Alignment explanation
Indices: 17865274--17869486 Score: 5669
Period size: 898 Copynumber: 4.7 Consensus size: 894
17865264 AGGCATACGA
* * ** * * * *
17865274 AGTTCATTCCCAATGTAAGATCGGATCAAACCGAGGGTTGCACCAGCACATGCTAGGATCAGGCA
1 AGTTCATTCCCAGTCTAAGATCGGA-CCGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCA
* * * *
17865339 TGTGCTGGTACCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCAGAGAACTTGACC
65 TGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACC
** ** *
17865404 GGTGGCATTGGGGTTCCGGTGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTG
130 GACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * *
17865469 CTGGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAATCTCGAGAACTCACAACCCCTTA
195 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * * *
17865534 AAGAGAATTTGAGATTTTCCACGTTTTCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
260 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
*
17865599 TTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
325 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * * *
17865664 AAAAAAATACAAGGATCATGTCTACCAAGTCTGGGGCTAAAAATCCTTCCGAAAAAATTTTAAAA
390 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
* * *
17865729 AATCCCGAACCGAAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAA
455 AAT-CCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
*
17865794 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
519 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
17865859 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
584 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * * *
17865924 TCTCTGGCCGACGTAGTCCCCACCTGCCTGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATA
649 TCTCTGGCCGGCGTAG----C-TC-GCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* ** ** * *
17865989 CGAAGTTCATTCCCAATCTAAGATCAGACTGGATGA-GGTTG-GGGTGTAGGATCGGCAGCATGC
708 CGAAGTTCATTCCCAGTCTAAGATCAGACCAGATGAGGGTTGCGGCAGCAGGATCGGCAGCACGC
* * **
17866052 AGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCATGCAC
773 AGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGAGCCCGCAC
* * * * *
17866117 GTTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGG
838 GCTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAACATATGG
* * * *
17866174 AGTTCATTCCTAGCCTAAGATCGGACCTGATCGAGGGTTGCAGCAGCACATGCTAGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGACC-GACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCA
* *
17866239 AGTG-TCGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGAC
65 TGTGCT-GGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGAC
* * *
17866303 CGACGACATTGGGGTTTCGTCGATCGGGGGGGCCGGGGAGGGTGTGCGCACATTGATGTGCGATT
129 CGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGG-GGGTGTGCGCACA-TGATGTGCGA-T
* * * *
17866368 GGGTGCTGGTAATTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA-CTCAAGAACTCAAACCA
190 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * * *
17866432 GCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTTTGTAATGGGG
255 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * * * *
17866497 ACACTTTTTTCAAATCGTCACAAAATCTTGTACACTTCAAGTTTTTAGTTGAATTTTTTTATACA
320 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * * *
17866562 TGCCAA-AAATAATACAAGGATCAAGTCTACCAAATTTGGGGCCAAAAATCTTTCCAAAAAAATT
385 TGCCAACAAA-AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * ** *
17866626 TTAAAAAATTCCAAACCGTAAAAGGTTTTGAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCC
449 TTAAAAAA-TCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
*
17866691 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTGTGAATTTACAAGCCATAAAAATGGCATTG
513 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
*
17866756 GCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
578 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * *
17866821 CCCGTCTCTCTGGCCAGCGTAG-T-GCCCGCCCACCTGCTCGTTTCATCGGTTGACTTAGGCATA
643 CCCGTCTCTCTGGCCGGCGTAGCTCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * *
17866884 CGAAGTTCATTCCCAGTCTAAGATGAGACCAGACTGAGGGTTGTGGCAGCATGATCGGTAGCACG
708 CGAAGTTCATTCCCAGTCTAAGATCAGACCAGA-TGAGGGTTGCGGCAGCAGGATCGGCAGCACG
* * * * ** * * *
17866949 TAGAGGGGGACCCGGTCGATCCCTGGCTTACGCATCCCACCCCTCTGGTCGGCTGAGCGCCCCCA
772 CAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGAGCCCGCA
* * * * * * *
17867014 TGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCTAGTCTAAACGTAGGG
837 CGCTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAACATATGG
* * * * * *
17867072 AGTTCATTCCCAGTCTAAGATTGGACCGGACCAAGGGTTGTAGAATCACAGGCTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGACC-GACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCA
** * * *
17867137 TGTGCTGGTGCCAAATTTTTCTTCGTCGGGCCACCATCATCGGAGCTTCACCGGAGAACCTGACC
65 TGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACC
* * *
17867202 GACGGCATTGAGGTTTCGACGATCGAGGGGGGCCGGAGGGGGGTGTGCACACATGATGTGCGATG
130 GACGGCATTGGGGTTCCGACGATCG-GGGGGGCC---GGGGGGTGTGCGCACATGATGTGCGATG
* *
17867267 GGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGATCTCACACCCC
191 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
17867332 CTTAAAGAGCATTTGAGATTTTAAAGGTTTGCTGCCAGTA-CCATTAAAGTGTCTAAAATGGGGA
256 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * *
17867396 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT-TCTTGAATCTTCTTGTGCA
321 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC-TGAATTTTTTTGTGCA
* * * *
17867460 TGCCAACAAAAATAGAAGGATCATGTTTACCAAGTTTGGAGCCAAAACTCCTTCCGAAAAAATTT
385 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
*
17867525 TAAAAAAT-C---TCG----AA---TC----A-C-----AAATAGAAAACGAGTCGTCTTGCCAT
450 TAAAAAATCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
*
17867569 GAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
515 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* *
17867634 AAGCAGAAATATGAAGATGTGGCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
580 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * *
17867699 CGTTTCTCTGGCCGGCGTAGTACCCGCCGCGCCCGCCCGCTCATTTCGTCAGTTGGCTTAGGCAT
645 CGTCTCTCTGGCCGGCGTAG--CTCGCC-CGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * * * *
17867764 ACGGAGTCCATTCCCAGTCTAAGATCAGACCAGATCAAGGGTTGCAGTAGCAAGATCGGCAGAAT
707 ACGAAGTTCATTCCCAGTCTAAGATCAGACCAGAT-GAGGGTTGCGGCAGCAGGATCGGCAGCA-
* * * *
17867829 TGCAGAAGGGGGACCCGACCGGATCCCCGGCTTG-GCATGCTGTCCCTCCTGGCCGGCTGAGAGC
770 CGCAG-AGGGGGACCCGATC-GATCCCCGGCTTGCGCATCCTGCCCCT-CTGGCCGGCTGAGAGC
*
17867893 CCGCACGC-CGTTTCATGGGTTAACTTAGGCATAACGGAGTTCATGTCCCACAGTCTAAGCATAT
832 CCGCACGCTCGTTTCATGGGTTAACTTAGGCAT-ACGGAGTTCAT-T-CC-CAGTCTAAACATAT
17867957 GG
893 GG
* *
17867959 AGTTCATTCCCAGT-TAAGATCGGACTCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGC
1 AGTTCATTCCCAGTCTAAGATCGGAC-C-GACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGC
* * * * * * *
17868023 ATGTGCTGGTGTCGTATTTTTCTTCATCGGGGCACCATCGCCGAAGCATCTCAGGAGAACCTGAT
64 ATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGAC
* * * * *
17868088 CGGCGGCTTTGGGGTTCCGGCGATC-GGGGGTCC-GGGGGCGTGCGCACATGATGTGCGATGGGT
129 CGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
17868151 GCTGGTACTTGG-CCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
194 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
17868214 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
259 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
*
17868279 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTTAGCTGAATTTTTTTGTGCATGCC
324 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
*
17868344 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAGAATTTTAAA
389 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
*
17868409 AAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAA
454 AAATCC-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
** *
17868474 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATTTCATTGGCATG
518 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* **
17868539 CAGAAATATGAAGATGTGCCTAAA-CCGCCTACCACCCTATCGATCCATAGCTTGCGCATCCCGT
583 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * * *
17868603 CTCTTTGGCCGGTGTAGTTCCCGCCCGCCGCCCACCCGTTCGTTTCGTC-GTTGGCTTTGGCATA
648 CTCTCTGGCCGGCGTAG--CTCG--C-CCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * *
17868667 TGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAGGGTTGCGGCAGCAGGATCGGCAGCACG
708 CGAAGTTCATTCCCAGTCTAAGATCAGACCAGA-TGAGGGTTGCGGCAGCAGGATCGGCAGCACG
* *
17868732 CAGAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCTGCCCCTCTGGCTGGCTGAGAGCCCGCA
772 CAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGAGCCCGCA
*
17868797 CGCTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCTAG--T---C-TA---
837 CGCTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAACATATGG
** * * *
17868846 AG---A-T--C-G----A-A-C---CAAACCGAGGGTTACGGCAGCACATGCTGGGCTCGGCCAT
1 AGTTCATTCCCAGTCTAAGATCGGACCGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCAT
* * * *
17868895 GTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATCGCCGGAGCATCATCGGAGAACCTGACCG
66 GTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCG
*
17868960 ACGGCATTGGGGTTCCGACGATC-GGGGTGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
131 ACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
17869024 TGGTACTTGG-CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
196 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
17869088 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
261 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* *
17869153 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTTAGCTGAATTTTTTTATGCATGCCAA
326 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
*
17869218 CAAAAATATAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
391 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
*
17869283 ATCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
456 ATCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* *
17869348 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCACGTAG
521 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
* *
17869413 AAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTC
586 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
17869478 TCTGGCCGG
651 TCTGGCCGG
17869487 GGTANNNNNN
Statistics
Matches: 2940, Mismatches: 307, Indels: 160
0.86 0.09 0.05
Matches are distributed among these distances:
870 116 0.04
871 191 0.06
872 286 0.10
875 1 0.00
876 170 0.06
877 1 0.00
879 74 0.03
880 165 0.06
881 125 0.04
882 4 0.00
883 44 0.01
884 42 0.01
885 10 0.00
886 13 0.00
887 131 0.04
889 3 0.00
890 2 0.00
891 1 0.00
892 2 0.00
893 2 0.00
894 1 0.00
895 63 0.02
896 7 0.00
897 9 0.00
898 436 0.15
899 121 0.04
900 196 0.07
901 66 0.02
902 195 0.07
903 415 0.14
904 48 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (894 bp):
AGTTCATTCCCAGTCTAAGATCGGACCGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCAT
GTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCG
ACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
ATCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
TCTGGCCGGCGTAGCTCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTC
ATTCCCAGTCTAAGATCAGACCAGATGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGG
ACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGAGCCCGCACGCTCGTTT
CATGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAACATATGG
Found at i:17870614 original size:26 final size:26
Alignment explanation
Indices: 17870578--17870630 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17870568 GTTGACTTAG
*
17870578 GCATACAGAGTTCATTCCCAGTTTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17870604 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17870630 G
1 G
17870631 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17872167 original size:26 final size:26
Alignment explanation
Indices: 17872131--17872180 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
17872121 GACTTAGGCA
*
17872131 TACGAAGTTCATTCCTAGTCTAAGCG
1 TACGAAGTTCATTCCCAGTCTAAGCG
17872157 TACGAAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
17872181 ATCGGACTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCG
Found at i:17873055 original size:26 final size:26
Alignment explanation
Indices: 17873019--17873071 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17873009 GTTGACTTAG
17873019 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
*
17873045 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
17873071 G
1 G
17873072 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:17874848 original size:26 final size:26
Alignment explanation
Indices: 17874819--17874871 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17874809 GTTGACTTAG
* *
17874819 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17874845 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17874871 G
1 G
17874872 ATTGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17875754 original size:26 final size:26
Alignment explanation
Indices: 17875718--17875770 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17875708 GTTGACTTAG
* *
17875718 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17875744 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17875770 G
1 G
17875771 ATTGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17876655 original size:26 final size:26
Alignment explanation
Indices: 17876619--17876671 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17876609 GTTGACTTAG
* *
17876619 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
17876645 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
17876671 G
1 G
17876672 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:17877517 original size:902 final size:898
Alignment explanation
Indices: 17872011--17888782 Score: 20701
Period size: 902 Copynumber: 18.8 Consensus size: 898
17872001 ACGAGGCCAG
* * * * * * * * * *
17872011 GGGTTTCGGCAGTAGGATTGGCAACACGTAGAGGGGGACCTG-GCTGATCCCCGACTTGTGCATC
1 GGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATC-GATCCCCGGCTTGCGCATC
* * * *
17872075 CCGCCCCTCTGGCCGGCTGAGCACCCGCGCGCTCGTTTTGTGGGTTGACTTAGGCATACGAAGTT
65 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* * * * * *
17872140 CATTCCTAGTCTAAGCGTACGAAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTACGG
130 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGG
* * ** * *
17872205 TAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGTACCACCG-TCG
195 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTCG
** * * * * *
17872269 GAGCATCATCGGAGAACATAACCGACGGCATTGAGGTTCCGGCGATTGGGGGGGCCAGGTGGGGG
260 GAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGA-TCGGGGGGCC--G-GGGGG
*
17872334 TATGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
321 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* *
17872399 AAACCTGGAGAACTCACACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
386 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
*
17872464 ATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
451 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * *
17872529 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAAGACAAGGATCATGTCTACCAAGTTTGGGGACA
516 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * *
17872594 AAAATCCTTCCAAAAAAATTTTAAAAAATCTCGAA-C-C----A-----G-AAATCATGAAAAAT
581 AAACTCCTTCC-AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAAT
* *
17872647 AGAAAACGAGTCGTCTTGCCATGAAAGTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTAC
645 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * *
17872712 AAGCCATAAAAATGGCATTGGCA-CACAGAAATATAAAGATGTGCCTAAACTCACCTACCA-CCT
710 AAGCCATAAAAATGGCATTGGCATGA-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* *
17872775 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCACTCGCTCGCCCG
774 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--C-C-CGCCCGCCCG
*
17872840 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGAGA-C-GA-TC
835 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-T-CAGATCGGACT-
17872902 GA
897 GA
* * * * ** * * *
17872904 GGG-TGCAGTAGCAAGATCGGCAAAACGTAGA-GGGGACCCGGTCGATCCCCGACTTGCGCATCC
1 GGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCC
* * * * * *
17872967 CGCCCCTCTGGCTGGCTGAGCACTCGCACGCTCCTTTTGTGGGTTGACTTAGGCATACGGAGTTA
66 CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
**
17873032 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAAC
131 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGC
*
17873097 AGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG-TCGG
196 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTCGG
* * * *
17873161 AGCATCACCGGAGAACCTGACCGACGACATTGGGGTTCCGGCGATCGGGGGGCCGAGGGGTGTGC
261 AGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGC
* *
17873226 GTACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
326 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * *
17873291 TCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCTAGAAGCCATTAA
391 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * * * *
17873356 AGTTTCTAAAATGGGGACTCTTTTTTCAAATGATCACAAAATCTTGTACACTTTGAGTTTTTAGC
456 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
**
17873421 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATATCTACCAAGTTTGGGGCCAAAACT
521 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * ** *
17873486 CCTTCCAAAAAATTTT-AAAAATCCCGAATCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAA
586 CCTTCCAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAA
* *
17873550 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGCCTTAAGGGACCATTGTATGAATTTACAGGCCA
651 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* * * * *
17873615 TAAAAATGGTAGTGGCATGCAGAAATATGAAGATGTGCCCAAACCCACCTAACACCCTATCGATC
716 TAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
** * * *
17873680 CATAGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGGCCGCCCGTCCGCTCGTTTCGTC
781 CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTC
* *
17873745 GGTTAGCTTAGGCATACGGAGTTCATTCCCAGTTTAAGAATCAGAT--GAC--A
846 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATCAGATCGGACTGA
*** * * ** * * * *
17873795 GGG-TGCGGCAGCAGGAT-TACAGCACGTAGA-GGGGACCTGGCCAATCCCAGACTTTCGCATCC
1 GGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCC
* * * * * *
17873857 CGCCCCTCTAGCCGGTTGAGTTCGAATGCCGAAACGCTCTATTTTCGTGGTTTGACTTAGGGCAT
66 CGCCCCTCTGGCCGGCTGAG--CG---CCCG-CACGCTC--GTTTCGTGGGTTGACTTA-GGCAT
* * * * *
17873922 ACGGAGTTCATTCCCAGTCTAAGCAGACGAAGTTCTTTCCCAGTCT-AGATTCAGACCAGACCGA
122 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA-TCGGACCGGACCGA
* * *
17873986 -GG-TGCGG-TGCAACATGCTGGGCTCGGGCATGTGCTGGTGCCACTTTTTTCTTCGTCGGGGCA
186 GGGTTGCGGCAGC-ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
* * *
17874048 CCATCAC-CGAAGCATCGTCGGAGAACCTGACCGACGGCA-TGGGG-TCCG-CGATTCGGGGGGC
250 CCATCGCTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGA-TCGGGGGGC
* *
17874109 CGGGGGTGGGGTGTGCGCACATGATATGCGGATGGGTGCTGGTTATTTGGCCCTTATATTGGCCC
314 C---GG-GGGGTGTGCGCACATGATGTGC-GATGGGTGCTGG-TACTTGGCCCTTATATTGGCCC
* *
17874174 CCTATCCCTCATCAAACCTTGAGAACTCACA-CCCCTTAAAGAGCATTTGATATTTTACAGG-TT
373 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* *
17874237 GCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTTAAATGGTCACAAAATCTTGT
438 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
*
17874302 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACGAGGATCACGTCTA--
503 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * ** *
17874365 ATATTTTGGGGCCAAAACTCCTTCCAAAAAAATTTAAAAAATTCTTGAACCACAAAAAGTTTTGA
568 A-AGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTAAAAAA-TCCCGAACCGCAAAAAGTTTTGA
* *
17874430 AAATCATGAAAAATAGTAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
631 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* * *
17874495 TTGTATGAATTTACAAGCCATAAAAATTGCATTGGCATGTAGAAATATGAAGATATGCCTAAACC
696 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGCCTAAACC
* * * * * *
17874560 AACCTACCGCCCTATCGATCCACAGCTTGCGCTTCCCGTCTCTCTGGCCGACGTTGTGCCCGCTC
761 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-C-C
* *
17874625 GCCCGCACGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATC
822 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * *
17874690 AGACCAGACAGA
887 AGATCGGACTGA
* * * * * *
17874702 GGGTTGTGGCAGCAGGATCAGTATCACGCAGGGGGGGACCCAATCGATCCCCGGCTTACGCATCC
1 GGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCC
* * ** *
17874767 CTCCCCTCTGGCCGGCTGAGCGCTCGCATTCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTC
66 CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * * * * ** * *
17874832 ATTCCTAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTGGATCAGATTGAGTGTTTCGGC
131 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGC
* * * * *
17874897 AACACATGCTGGGCTCGGGCATGTGCTAGAGCCGCATTTTTCTTCGTCTGGGCACCATCGC-CAG
196 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTCGG
* * * * * *
17874961 AGCATCGTCGAAGAACTTCACCGACGGCATTGGGGTTCCGACAATCGGGGGGGTCGGGGGGGTGT
261 AGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGG-CCGGGGGGTGT
* * ** * *
17875026 GCACACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTTACCCCCTATCCCTCATGAAG
324 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* * * * * * *
17875091 CCTCAATAACTCACAACCCTTTACAGAGCATTTGAGATTTTACAGGTTTGCTGCCGGTAGCCATC
389 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* * *
17875156 AAACTGTCTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTA
454 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * *
17875221 GCTGAATTTTTTTGTGCATGCCAAAAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCAAAAA
519 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * *
17875286 CTCCTTCCAAAAAAATTTTAAAAAATCCTGAATCGCAAAAAGTTTTGAAAATCGTGAAAAATATA
584 CTCCTTCC-AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGA
* * *
17875351 AAATGAGTCGTCTTGCCATGAAACTTGACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAG
648 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* *
17875416 CCATAAAAATGGCATTGGCA-CATAGAAATATGAAGATGTGCCTAAACCCACCTACCGCCCTATC
713 CCATAAAAATGGCATTGGCATGA-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * *
17875480 GATCCACGGCTTGCGCTTCCCGTCTCTCTGGCCGACGTTGTG-CC-CCCGCCCGCCCCGCTCGTT
777 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-CCCGCTCGTT
* * *
17875543 TCGTCAGTT-GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGA
841 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGA
* * * * ** *
17875600 GGGTTGTGGCAGCAAGATCAGTAGCACGCAGGGGGGGACCCGGCCGATCCCCAGGCTTACGCATC
1 GGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCC-GGCTTGCGCATC
* * ** *
17875665 CCG-CCCTCTGGCCGGACTGAGCGCTCGTATTCTCGTTTTGTGGGTTGACTTAGGCATACGGAGT
65 CCGCCCCTCTGGCCGG-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* * * * * **
17875729 TCATTCCTAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTGGATCAGATTGAGGGTTGCG
129 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCG
* * *
17875794 GCAACACATGCTGGGCTCGGGCATGTGCT-GTAGTCGCATTTTTCTTCGTCGGGCCACCATCG-T
194 GCAGCACATGCTGGGCTCGGGCATGTGCTGGT-GCCGCATTTTTCTTCGTCGGGGCACCATCGCT
* * * * *
17875857 CGGAGCATCGCCGAAGAACTTCACCAACGGCATTGGGGTTCCGACGATCAGGGGGGTCGGGGGGT
258 CGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGT
* * ** *
17875922 GTGCACACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTTACCCCCTATCCCTCATGA
322 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* * * * * * *
17875987 AGCCTCAATAACTCACAACCCCTTACAGAGCATTTGAGATTTTACAGGTTTGCTGCCGGTAGACA
387 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* * *
17876052 TCAAACTGTCTAGGAATGGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTT-GAG-T
452 TTAAAGTGTCT-GAAAT-GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* *
17876114 TTTAGCTGAATTTTTTTTGTGCATGCCAAAAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGC
515 TTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* ** ** * *
17876179 AAAAACTCCTTCTGAAAAATTTTAAAAAATCTTGAACCCCAAAAAG-TTTCAAAATCGTGAAAAA
579 CAAAACTCCTTCCAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAA
*
17876243 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACTATTGTATGAATTTA
644 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* *
17876308 CAAGGCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
709 CAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * *
17876373 ATCGATCCACGGCTTGCGTATCCCGTCTCTCTGACCGGTGTAGTGCCCGCCCGCCCGCCCGCTCG
774 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCG
* * *
17876438 CTCATTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGA
839 ----TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGA
* * * * * * **
17876502 GGGTTACGGTAGCAGGATCGGTAGCACACAGAGGGGGACCCGATCAATCCCTGACTTATGCATCC
1 GGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCC
* * * * *
17876567 TGCCCCTCTGGCCGACTGAGCGCCCGTATGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTC
66 CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * * * *
17876632 ATTCCTAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTACGAC
131 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGC
* * *
17876697 AGCACATGCTAGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACTATCGCT-GG
196 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTCGG
*
17876761 AGCATCGCCGGAGAACCTGACC-AGCGGCATTGGGGTTCCGGCGATCAGGGGGGCCGGGGGGTGT
261 AGCATCGCCGGAGAACCTGACCGA-CGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGT
* *
17876825 GCACACAGGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
324 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
*
17876890 CCTCGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
389 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* * *
17876955 AAAGTGTTTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCGAGTTTTTA
454 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * *
17877020 GCTGAATTTTTTTGTGCATGCCAACAAAAATACGAGGATCACGTCTA-AAATTTTGGGGCCAAAA
519 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * **
17877084 CTCCTTCCAAAAAATTTTTAAAAAATCCCGAATCGCAAAAAATTTCCAAAATCGTGAAAAATAGA
584 CTCCTTCCAAAAAA-TTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGA
*
17877149 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAACGCTTAAGGGACCATTGTATGAATTTACAAG
648 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
17877214 CCATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
713 CCATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * *
17877279 ATCCACGGCTTACGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACCCGCTCACTAG
778 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCT--C--G
* * * *
17877344 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGGCTGA
839 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGA
** * * * * * *
17877404 GGGTTGCGATAGCAGGATCGATAGGACACAGAGGGGGACCCGATCGTTCCCCGGCTTACTCATCC
1 GGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCC
* * * * * * *
17877469 TGCCCCACTGGCCGTCTCAGTGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGAAGTTC
66 CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * * * * * * *
17877534 ATTCCCAATCTAAGCATACAGAGTTCATTCCCAGTCTAAAATCAGACTGGACTGTGGGTTGTGGC
131 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGC
* *
17877599 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCG-TCGG
196 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTCGG
* * * *
17877663 AGCATCACCGAAGAACCTGACCGACGACATTGGGGTTCCGACGATTGGGGGGGCCGAGGGGGTGT
261 AGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGA-TCGGGGGGCCG-GGGGGTGT
* * * *
17877728 GCGCACAGGATGTGTGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCACA
324 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
** * * *
17877793 CCTCGAGAACTCACACCGTCTTAAAGAGCATTAGAGATTTTATAGGTTTGCTGCCAGTAGCGATT
389 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* *
17877858 AAAGTGTTTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
454 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* *
17877923 GCTGAATTTTTTTGTG-ACGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
519 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * * * * * *
17877987 CACCTTTCAAAAAAATTTGAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCATGAAAAAAAGA
584 CTCC-TTCCAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGA
* *
17878052 AAACGAGTCATCCTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
648 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* * *
17878117 CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCCAAAGCCACCTACCACCCTATCG
713 CCATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
*
17878182 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCAGCCCGCCCGCTCGTTTC
778 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTC
*
17878247 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGATCGGA-TCGA
843 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACT-GA
* * * * * *
17878303 GGGTTGTGGTAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGACGTGCACATCC
1 GGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCC
** * * * *
17878368 CGCCCCTCTGGTAGGCTGAGTGCCTGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGAAGTTC
66 CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* ** * * *
17878433 ATTCCCAGTATAAGCATACGGAGTTCATTCCCAACCTAAGATCAGACCGAACCGAGGGTTGCGAC
131 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGC
* * * * * *
17878498 AGCACATGCTGGGCTCGGGCATGAGCTGGTGCCACATTTTTATTCGTCGAGGCATCATCAC-CGG
196 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTCGG
* * * *
17878562 AGCATCGCTGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGTGGGCCCGAGGGGGTGTG
261 AGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCG-GGGGGTGTG
* *
17878627 CGCACATGGTGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
325 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
*
17878692 CTTGAGAACTCACA-CCCCTTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
390 CTCGAGAACTCACACCCCCTT-AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
*
17878756 AAAGTGTCT-AATTGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
454 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
** * *
17878820 GCTGAATTTTTTTGTGTGTGCCAAAAAAAATACAAGGATCACGTCTA-CAAGGTTTAGGGCCAAA
519 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA-GTTTGGGGCCAAA
** * * **
17878884 ACTCCTTCTGAAAAATTATTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCGTGAAAAATAG
583 ACTCCTTCCAAAAAATT-TTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAG
* * *
17878949 AAAATGAGTCGTCTCGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAG
647 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* *
17879014 GCCATAAAAATGGCATTGGCA-CACAGAAATATGAAGATGTGCCTAAACCCACCTAACACCCTAT
712 GCCATAAAAATGGCATTGGCATGA-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * *
17879078 CAATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCGCCCGCCCACTCATT
776 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTT
* * * *
17879139 TCATCGGTTGGCTTAGGCATACGAACTTCATTCCCAGTCTAAGATCAGATCAGA-TCGA
841 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACT-GA
* * * * * * * * * *
17879197 GTGATGTGGCAGTAAGATCAGTAGCATGCAGATGGGGACCC-AGCTGATCCCCGGGTTGCGCATC
1 GGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATC-GATCCCCGGCTTGCGCATC
* * *
17879261 CCGCCCCTCTGGCCGACTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTT
65 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* *
17879326 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAAGGTTGCGG
130 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGG
* * * * * *
17879391 TAGCACATGCTGGACTCAGGCATGTGCTGGTGCCGCATTTTTCTTTGCCAGGGCACCATCGC-CG
195 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTCG
* *
17879455 GAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGAAGGGCTGGGGGGTGT
260 GAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGG-GGGGCCGGGGGGTGT
* * *
17879520 GCGCACATGATGTGTGATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTAACCCTCATCAAA
324 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* * * * *
17879585 CCTCAAGAACTCATACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACTAATAGCCATT
389 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* * * *
17879650 AAAATGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTT
454 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* ** *
17879715 GCTGAATTTTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTTTGGCAAA
519 GCTGAA--TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * * * * *
17879780 AACACCTTCCGAAAAAATTTGATAAAATCCCAAACCCCAAAAAGTTTTGAAAATCATGAAAAATA
582 AACTCCTTCC-AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATA
* *
17879845 GAAAATGAGTCGTCCTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
646 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* * *
17879910 AGCCATAAAAATGGCATTGTCA-CACAGAAATATGAAGATGTGCCTAACCCCACCTACCACCCTA
711 AGCCATAAAAATGGCATTGGCATGA-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* *
17879974 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCAGGCGTAGT----ACCCGCCCGCCCGCTCGT
775 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGT
** * * * *
17880035 TTCGTCGGTTGGCTTAGGCATACAAACTTTATTCCCAATCTAAAATCAGATCGGA-TCGA
840 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACT-GA
* * * * * * *
17880094 GGGTTGTGGCAGCAAGATTGGTAGCACGCACAGGGGGACCCGA-CCATCCCTGAG-TTGCACATC
1 GGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCG-GCTTGCGCATC
17880157 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
65 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* *
17880222 CATTCCCAGTCTAAGCATACGTAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGG
130 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGG
* * * * ** * * *
17880287 TAGCAGATGCTGGGCTCAGGCATGTGCTGGTGTCATATTTTTCTTTGCCAGGGCACCATCG-TCG
195 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTCG
** * * * *
17880351 GAGCATCGTAGGAGAACTTGACTGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGCG
260 GAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGGGGGTG
** * *
17880416 TGCGCACATGATGTTTGATGGGTGCTGGTACTTTGCCCTTATATTGGCCCCCTATCCGTCATCAA
323 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* * * **
17880481 ACCTCGAGAATTCATACCCCCTTACAGAGCATTTGAGATTTTACAGGTTTGCTGCCAACAGCCAT
388 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* * * * * *
17880546 TAAAATGTCTGAAATGGGAACACTTTTTTCAAATGGTCATAAAATCTTGTAAACTTCAATTTTTT
453 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
*
17880611 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTTCCAAGTTTGGGGCCAAA
518 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* * * *
17880676 ACACCTTCCAAAAAAATTTGAAAAAATCCCAAACCGCAAAAAGTTTTGAAAATCATGAAAAATAG
583 ACTCCTTCC-AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAG
* * *
17880741 AAAACGAGTCGTCCTGCCATGAAACTTCACGTGAAGGGTTAAAGGACCATTGTATGAATTTACAA
647 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
17880806 GCCATAAAAATGGCATTGGCA-GATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
712 GCCATAAAAATGGCATTGGCATGA-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* ** * * *
17880870 CGATGCACGGCTTGCATATCCCGTCACTCTGGCTGACGTAGT------------GCCCGCTCGTT
776 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTT
*
17880923 TCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGA-TCGA
841 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACT-GA
** * * * * * *
17880981 GGGTTGTAGCAACAAGATTGGTAGCACGTAGACGGGGACCCGACCGATCCCCGGCTTGCGCATCC
1 GGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCC
* ** * * *
17881046 CGCCCCTCTGGCCGGCTCAATGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATATGGAGTTA
66 CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * * * * *
17881111 ATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAAATCAGACCGGACTGTGGGTTGTGGC
131 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGC
* * * *
17881176 AGCACATGCTGGGCTCGGGCATGTGTTGGTGCCACATTTTTCTTCGCCGGGGCACCATC-ATCGG
196 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTCGG
* * * * *
17881240 AGCATCACCGGAGAACCTGACCGATGGCATTGGGGTTTCGACGGTCGGGGGGACGGGGGGTGTGC
261 AGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGC
* *
17881305 GCACATGATGTGCGATGGGTGTTGGTACTTGTCCCTTATATTGGCCCCCTATCCCTCATCAAACC
326 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * *
17881370 TCGAGAACTCATACCTCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
391 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * * * *
17881435 AATGTCTGAAATGGGGACACTTTTTTCAAACGTTCACAAAATCTTGTACACTTTGAGTTTTTAAC
456 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * *
17881500 TGAATTTTTTTTGTGCACGCCAACAAAAATAAAAGGATCACGTCTACCAAGCTTGGGGCCAAAAC
521 TGAA-TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
** * ** **
17881565 TCCTTCCGAAAAAATTTTAAAAAATCGTGAACCGCAAAAGGTTTCAAAAATTATGAAAAATAGAA
585 TCCTTCC-AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAA
* *
17881630 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACTATTGTATGAATTTACAAGG
649 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* *
17881695 CATAAAAATGGCATTGGCATGCAA-AAATATGAAGATGTACCTAAACCCATCTACCACCCTATCG
714 CATAAAAATGGCATTGGCATG-AAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * *
17881759 ATCCATGGCTTGCGCATCCCGTCTCTCTGGTCGACGTAGT--------GCCCGCCCGCTCGTTTC
778 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTC
* *
17881816 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGCCTAAGATCAGACCGGACTGA
843 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGA
* * * * * * * * *
17881872 GGGTTGAGGCAGCATGATCGGTAGCATGCAGAGGGTGA-CCTAGCCGATCCCGGGCCTACGCATC
1 GGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGA-TCGATCCCCGGCTTGCGCATC
* * * *
17881936 CCGCCCCT-TCGACCGGCTGAGCGCCCGTACGCTAGTTTCGTGGGTTGACTTAGGCATATGGAGT
65 CCGCCCCTCT-GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* * * *
17882000 TCATTCCCAGTTTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCG
129 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCG
* *
17882065 GCAGCACAAGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTC-T--T----------TC-C-C
194 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTC
* * * * *
17882115 GGAGCATCACCGGAGAACCAGATCGACGGTATTGGGGTTCTGACGATCGGGGGGCCGGGGGGGTG
259 GGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCC-GGGGGGTG
17882180 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCAC-TATATTGGCCCCCTATCCCTCATCA
323 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC-CTTATATTGGCCCCCTATCCCTCATCA
* *
17882244 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCAA
387 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
*
17882309 TTAAAGTGTCTGAAATGGGGACACTTTTTTGAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
452 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
*
17882374 TAGCTGAATTTTTTTGTGCATGCCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
517 TAGCTGAATTTTTTTGTGCATGCC-AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* *
17882439 AAACT-CTTCCGAAAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAAT
581 AAACTCCTTCC-AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAAT
* * * * *
17882503 AAAAAACGAGTCGTCTTGCCATGAAACTTCACGCGAAGGCCTAAGGGGCCACTGTATGAATTTAC
645 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * *
17882568 ACGCCATAAAAATGGCATTGGCATGCAGGAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
710 AAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * * * *
17882633 TCGATCCATGGCTTGCACATCCCATCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCTCGCTAGT
775 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGT
* * * * * *
17882698 TTCGTCAGTTGGCTTAGGTATACGGAGTTGATTCCCAATCTAAGATCGGA-CTGGACCGA
840 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATC-GGACTGA
* ** * * * *
17882757 GGGTTGCGGCAACAGGATCGACAGCGCGCAGTGGGGGACCCGGTCGATCCCCGAG-TTGTGCATC
1 GGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCG-GCTTGCGCATC
* * * * *
17882821 TCGCCCCTCTGGCCGGTTGAGCGCCCGTACACTCGTTTCGTGGGTTGACTTAGGTATACGGAGTT
65 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* * *
17882886 CATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCCGACCGGACCGAGGGTTGCAG
130 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGG
* *
17882951 CAGCACATGCTGGCCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCG-CTGGGGCACCATCGC-C
195 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGCTC
** * * * * *
17883014 AAAGCATCGTCGGAGAACCTGACCGGCAGCATTGGGGTTCCAATGATCGAGGGGGCCGGGGGGGT
259 GGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCG-GGGGGCC-GGGGGGT
* * * * *
17883079 GTGTGCACATGATGTGCAATGGGTGCCGGTACTTGGCCCTTATATTAGCCCTCTATCCCTCATCA
322 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* *
17883144 AACCTGGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTA
387 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
** * * *
17883209 TTAATCTGTCTGAAATGGTGACACATTTTTCAAATGGTCACAAAATCATGTACACTTCGAGTTTT
452 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* *
17883274 TAGCTGAATTTTTTTGTGCATTCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAA
517 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * * **
17883339 AACTCCATCCAAAAAAATTCTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATTATGAAAAATA
582 AACTCCTTCC-AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATA
** *
17883404 GAAAACGAGTCGTCTTGCCATGAAACTTCACAAGAAGTCTTAAGGGACCATTGTATGAATTTACA
646 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* *
17883469 AGCCATAAAAATGGCATTGGCA-CATAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTA
711 AGCCATAAAAATGGCATTGGCATGA-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * *
17883533 TCGATCCACGGCTTGTGCATCCCGTTTCTCT-GCCTGACGTAGTGCCCGCCCATCCGCCCGCCCG
775 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-GGCGTAGTGCCCG--C--CCGCCCGCCCG
* * * * * * ** * *
17883597 CTCATTTCATCGGTTGGCTTAGGTATATGGAGTTCATTTCCAGTGTAAGATTGGATCGAACCGA
835 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGA
* * **
17883661 GGGTTGCAGCAGTAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGATTTGCGCATCC
1 GGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCC
* * ** * *
17883726 CGTCCCTCTGGCCAGCTGAGCGCTTGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTC
66 CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * * *
17883791 ATTCCCAGTCTAAGCATACGGAGTTGATTCCCAGTATAAGATCGGACCAGACCGAGGGTTACGGC
131 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGC
* * *
17883856 TGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCG-TCGG
196 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTCGG
* * * * *
17883920 AGCATCGTCGAAGAACCTGACCGGCAGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGC
261 AGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGC
* * * * *
17883985 ACACATGATGTGTGGTGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATGAAACC
326 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* *
17884050 TTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAA
391 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * * * *
17884115 GGTCTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCAAGTTTTAAGC
456 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* *
17884180 TGAATTTTTTTATGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
521 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* **
17884245 CCTTTCGAAAAAAATTTT-AAAAATCCCGAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAA
586 CC-TTC-CAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAA
* *
17884309 AACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAACC
649 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
** * *
17884374 CATAAAAATGGCATTGAAATGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGA
714 CATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* *
17884439 TCCACGGCTTGCGTATCCCGTCTCTTTGGCCGGCGTAGTGCCCGCCTC-CCCGCCCGCTCGTTTC
779 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC-CGCCCGCCCGCTCGTTTC
* * ** * * *
17884503 GTCGGTTCGTTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATTGGACCGG
843 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGA
* * * * * * * * *
17884559 GGGTTACGGTAGTAGGATTGGCAGCATGTAG-GGGGAGACCCAGA-CGATCCCCGTCTTGCGCAC
1 GGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGG-GACCC-GATCGATCCCCGGCTTGCGCAT
* * **
17884622 CCCACCCCTCTGGCCGGCTAAGCGCCCGCACGCTCGTTTCACGGGTTGACTTAGGCATACGGAGT
64 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGT
* * *
17884687 TCATTCCCAG--T-AGCATA--TAG-TCA-T-CCAG--TAAGATCGGACTGGATCGAGGGTTGCG
129 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCG
* * * * *
17884742 GTAGCACATGCTGGGCTCAGGCATGTGCTGTTGCCGCATTTTTCTTCGTCAGGGCACCGA-CGAT
194 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACC-ATCGCT
* * * *** ** * ** * * *** *
17884806 CGG-G-GTGGTCGG-G-GGGTGTGC-AC-ACA-TGATG-T--G-CGAT--GGGTG-CTGGTACTT
258 CGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTG
* * * *** * ** * ***
17884857 TGC-C-C-T--TAT---ATTGG-CCCCAT-C-T--CCCTCATCA---AACCCCGAGAACTCA-C-
323 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT-ATTGGCCCCCTATCCCTCATCA
* *** * *
17884904 -ACC-C----CCTTCA-AGAGCATT--TGAG-A--T-----TTTACAGGTTTGCTGCCAGTAGCC
387 AACCTCGAGAAC-TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
17884952 ATTAAAGTGTCTGAAAT-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
451 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
*
17885016 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATGACGTCTACCAAGTTTGGGGCCA
516 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * * * *
17885081 AAACGCCTTACGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTAAAAATCGAGAAAAAT
581 AAACTCCTT-CCAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAAT
* *
17885146 AGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTTAC
645 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * * *
17885211 AAGCCATAAAAATGGTATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCGACCACCCTA
710 AAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* *
17885276 TCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACTCGCCCGT
775 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG--C-C-CGCCCGC
* * * *
17885341 TCATTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATC-GAATCAGACCGA
836 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ATCGGACTGA
* * ** * * * * *
17885404 GGGTTGCGGTAGCATGATCGACAGCACGCAGAGGGGGACCCGACCGATCCTCGACATGCGCCTCC
1 GGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCC
* ** *
17885469 TGCCCCTCTGGCCGGCTGA-CGCCCGCACGCTCGTTTTTTGGGTTGACTTTGGCATACGGAGTTC
66 CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * * * *
17885533 ATTCCCAGTCTAAGCATAGGGAGTTCATTCCCAGTCTAAGATTGGATCGGAGCGAGGGTTACGGC
131 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGC
* *
17885598 AGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCA----T---
196 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTCGG
* ***
17885656 --CAT---CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCCGGGGGTTTGGGGGGGTGT
261 AGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGAT-CGGGGG-GCCGGGGGGTGT
* * * *
17885716 GCGCACATGATGTGTGATGGGTGCTAGTACTTGGCCCTGATAGTGGCCCCCTATCCCTCATCAAA
324 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* *
17885781 CCTCGAGAACACACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATT
389 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
*
17885846 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTA
454 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
*
17885911 GCTGAATTTTTTTGTGCATGCCGAA-AAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAA
519 GCTGAATTTTTTTGTGCATGCC-AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* * * **
17885975 AATCCTTCCAAAAAAATTCTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAG
583 ACTCCTTCC-AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAG
* * * *
17886040 AAAATGAGTTGTCTTGCCATGAAACTTCACGTAAAGGCTTACGGGACCATTGTATGAATTTACAA
647 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* *
17886105 GCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATC
712 GCCATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * * * * **
17886170 AATCCGCGGCTTGCGCATCCAGT-T-TCT--CTGAC---G-G-CCG--GGCCCGTTCGCTCGTTT
777 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTT
* ** ** * * *
17886224 CGTCGGTTGGCTTAGACATACGGAGTTCATTGTCAGTCTAAGATTGGACCAGACCGA
842 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGA
* * * * ** * *
17886281 GGGTTGTGGCAGCAAGAAT-GGTAGCACGTAGAGGGGGACCTGGCCAATCCCCGACTTGCGCATC
1 GGGTTGCGGCAGC-AGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATC
* *
17886345 CCGCCCCTCTGGCCGACTGAGCGCCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
65 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
*
17886410 CATTCCCAG--T----ATA---AG---------A-TC----A---GACCGGACCGAGGGTTGTGG
130 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGG
* * * **
17886449 CAGCACATGCTGCGCTCGGGCATGTGCTGTTGCCGCTTTTTTCTTCGTCAAGGCACCATCG-TCG
195 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTCG
* * * * * **
17886513 GGGCATCGCCGGAGAACCTGACTGGCGGTATTGGGCTTCCGACTTTCGGGGTGG--GAGGGGGTG
260 GAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGG-GGCCG-GGGGGTG
* * * * * * *
17886576 CGCGCACATGATGTGTGATGGGTACTGCTACTTGGCCTTTATATTGGCCCCCTAACCCCCATCAA
323 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* *
17886641 ACCTCGAGAACTCACGCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCAT
388 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
17886706 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
453 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
*
17886771 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAGGTTTGGGGCCAAA
518 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AA
* *
17886836 AACTCCTTCCAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAG
582 AACTCCTTCCAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAG
* * * * *
17886901 AAAATGAGTCATCTTGCCCTAAAACTTCTCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
647 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
*
17886966 GCCATAAAAATGGCATTGGCATGTAGAAATATGAA-ATGTGCCTAAACCCACCTACCACCCTATC
712 GCCATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * * * * *
17887030 GATCCACGGCTTGGGCATCCCATCTCTCTGGCCCGCGTAGTGCCCGTCGGCCCGCTCGCTCATTT
777 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTT
* * * * *
17887095 CGTCAGTTGGCTTAGGGATACGGAGTTCATTCCCAGTATAAGATCAGACCGGACCGA
842 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGA
* * * * * *
17887152 GGGTTACGGCAGTAGGATCGATAGCACGTAGAGGGGGGACCCGGTCGAT-CCCTGCTTGCGCATC
1 GGGTTGCGGCAGCAGGATCGGTAGCACGCAGA-GGGGGACCCGATCGATCCCCGGCTTGCGCATC
* * *
17887216 CCGCCCCTCTGGCCAGCTGAGCGTCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGTAGTT
65 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* *
17887281 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGA
130 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGG
17887346 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGC-CG
195 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTCG
* * * *
17887410 GAGCATCGCCGGAGAGCCTGACCGGCGGCATTGGGGTTCCGACAATCGGGGGGTTCGGGGGGGGT
260 GAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG--C-CGGGGGGT
* * *
17887475 ATGCGCACATGATGTGCGATGGGTGCTGCTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCA
322 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* * * * * * *
17887540 AACCTTGAGAACTCACACCCCCTTAAAAAGCATTTCAGATTTTTACATGTTTGCTTCTAGTGGCC
387 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA-TTTTACAGGTTTGCTGCCAGTAGCC
17887605 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
451 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
*
17887670 TTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
516 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* ** * * * *
17887735 AAACTCTTTTTGAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTTGAAAATTGTGAAAAAT
581 AAACTC-CTTCCAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAAT
* * * *
17887800 AGAAAAAGTGTCGTCTTGCCATGAGACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTAC
645 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * *
17887865 AAGCCAGAAAAATGGCATTGGCA-CACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
710 AAGCCATAAAAATGGCATTGGCATGA-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
*
17887929 ATCGATCCACGGCTTGCGCATCCCGTCAT-TCTGGTCGGCGTAGTGCCCGCCCGCCAGCCCGCCC
774 ATCGATCCACGGCTTGCGCATCCCGTC-TCTCTGGCCGGCGTAGTGCCCG--C-CC-GCCCGCCC
* ** * * *
17887993 GCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGGACCAGACCGA
834 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGA
* ** * * * * * *
17888058 GGGTTGCGGCAGCAAGATCGACAGCACACAGAGGGGGACCCGACCGATCACTGGCCTGCGCATCA
1 GGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCC
* * * *
17888123 CGCCCCTCCGACCGGCTGAGCACCCGCACGCTCGTTTCGCGGGTTGACTTAGGCATACGGAGTTC
66 CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
*
17888188 ATTCCCAGTCTAAG-AT-C-G-G---A----C---C--AGA-CTGA---G---GA---TTGC-GC
131 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGC
** * *
17888226 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGCGGCACCATCAC-CGG
196 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTCGG
* ** ** * * * *
17888290 AGCATCGTCGGAGAACCTGGTCGGTGGTATTGGGGTT-CTAGCGATCGGGGGGGAC-GAGGG-GT
261 AGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGA-CGATC-GGGGGGCCGGGGGGTGT
* * * * *
17888352 GCACACATGATGTACGATGGGTGCTGGTTCTTGGCCCATATATTGGCCCCTTATCCCTCATCAAA
324 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* *
17888417 CCTTGAGAACTCACATCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
389 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* *
17888482 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTTGAGTTTTTA
454 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * * *
17888547 GTTGAATGTTTTTGTGCATGCCAAGAAAAATACAAGGGTCACGTCTACCAAGTTTGGGGCCAAAA
519 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * * ** * * * *
17888612 TTCCTTTCGAAAAAATTTAAAAAAATCTTGAACCACAAAAAGTTTCGAAAATCATGAAAAGTAGA
584 CTCC-TTCCAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGA
* *
17888677 AAAAGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAG
648 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* *
17888742 CCATAAAAATGGCATTGGCCTGCAGAAATATGAAGATGTGC
713 CCATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGC
17888783 TGGTGTCGCA
Statistics
Matches: 13932, Mismatches: 1608, Indels: 697
0.86 0.10 0.04
Matches are distributed among these distances:
840 13 0.00
841 317 0.02
842 38 0.00
843 1 0.00
844 56 0.00
845 121 0.01
846 8 0.00
847 9 0.00
848 2 0.00
849 6 0.00
850 8 0.00
851 1 0.00
852 77 0.01
853 8 0.00
854 76 0.01
855 2 0.00
856 3 0.00
857 3 0.00
858 6 0.00
859 3 0.00
860 63 0.00
861 388 0.03
862 25 0.00
863 36 0.00
864 3 0.00
865 1 0.00
866 6 0.00
867 6 0.00
868 2 0.00
869 6 0.00
870 7 0.00
871 173 0.01
872 17 0.00
873 11 0.00
874 298 0.02
875 100 0.01
876 13 0.00
877 395 0.03
878 299 0.02
879 99 0.01
880 14 0.00
881 7 0.00
882 3 0.00
883 10 0.00
884 4 0.00
885 273 0.02
886 207 0.01
887 633 0.05
888 307 0.02
889 10 0.00
890 79 0.01
891 560 0.04
892 327 0.02
893 14 0.00
894 519 0.04
895 366 0.03
896 433 0.03
897 1026 0.07
898 1001 0.07
899 900 0.06
900 825 0.06
901 860 0.06
902 1234 0.09
903 699 0.05
904 619 0.04
905 46 0.00
906 182 0.01
907 5 0.00
908 15 0.00
909 7 0.00
910 41 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (898 bp):
GGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCC
CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGC
AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTCGG
AGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGC
GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
CCTTCCAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAA
CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
TAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTC
GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGA
Found at i:17877558 original size:26 final size:26
Alignment explanation
Indices: 17877521--17877572 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17877511 GTTGACTTAG
17877521 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
17877547 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAATCTAA
17877573 AATCAGACTG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:17878472 original size:26 final size:26
Alignment explanation
Indices: 17878420--17878472 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17878410 GTTGACTTAG
**
17878420 GCATACGAAGTTCATTCCCAGTATAA
1 GCATACGAAGTTCATTCCCAACATAA
* *
17878446 GCATACGGAGTTCATTCCCAACCTAA
1 GCATACGAAGTTCATTCCCAACATAA
17878472 G
1 G
17878473 ATCAGACCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAACATAA
Found at i:17879351 original size:26 final size:26
Alignment explanation
Indices: 17879314--17879366 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17879304 GTTGACTTAG
17879314 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
17879340 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17879366 G
1 G
17879367 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17880247 original size:26 final size:26
Alignment explanation
Indices: 17880210--17880262 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17880200 GTTGACTTAG
17880210 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17880236 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17880262 G
1 G
17880263 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17881134 original size:26 final size:26
Alignment explanation
Indices: 17881098--17881149 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
17881088 GTTGACTTAG
17881098 GCATATGGAGTTAATTCCCAGTCTAA
1 GCATATGGAGTTAATTCCCAGTCTAA
*
17881124 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTAATTCCCAGTCTAA
17881150 AATCAGACCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATATGGAGTTAATTCCCAGTCTAA
Found at i:17882912 original size:26 final size:26
Alignment explanation
Indices: 17882876--17882926 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17882866 TGACTTAGGT
*
17882876 ATACGGAGTTCATTCCTAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
17882902 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
17882927 ATCCGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:17883814 original size:26 final size:26
Alignment explanation
Indices: 17883778--17883830 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17883768 GTTGACTTAG
*
17883778 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTATAA
*
17883804 GCATACGGAGTTGATTCCCAGTATAA
1 GCATACGGAGTTCATTCCCAGTATAA
17883830 G
1 G
17883831 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTATAA
Found at i:17885556 original size:26 final size:26
Alignment explanation
Indices: 17885520--17885572 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17885510 GTTGACTTTG
17885520 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17885546 GCATAGGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17885572 G
1 G
17885573 ATTGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17887306 original size:26 final size:26
Alignment explanation
Indices: 17887269--17887321 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17887259 GTTGACTTAG
*
17887269 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17887295 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17887321 G
1 G
17887322 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17889268 original size:535 final size:537
Alignment explanation
Indices: 17888350--17889314 Score: 1535
Period size: 535 Copynumber: 1.8 Consensus size: 537
17888340 GGGACGAGGG
*
17888350 GTGCACACATGATGTACGATGGGTGCTGGTTCTTGGCCCATATATTGGCCCCTTATCCCTCATCA
1 GTGCACACATGATGTACGATGGGTGCTGGTACTTGGCCCATATATTGGCCCCTTATCCCTCATCA
** *
17888415 AACCTTGAGAACTCACATCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
66 AACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* * * *
17888480 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTTGAGTTTT
131 TTAAAGTGTCTAAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGGTTT
* * *
17888545 TAGTTGAATGTTTTTGTGCATGCCAAGAAAAATACAAGGGTCACGTCTACCAAGTTTGGGGCCAA
196 TAGTAGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
** ** * *
17888610 AATTCCTTTCGAAAAAATTTAAAAAAATCTTGAACCACAAAAAGTTTCGAAAATCATGAAAAGTA
261 AATTCCTACCGAAAAAATTTAAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATA
* **
17888675 GAAAAAGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACA
326 GAAAAAGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACA
*
17888740 AGCCATAAAAATGGCATTGGC-CTGCAGAAATATGAAGATGTGCTGGTGTCGCATTTTTCTTCAC
391 AGCAATAAAAATGGCATTGGCAC-GCAGAAATATGAAGATGTGCTGGTGTCGCATTTTTCTTCAC
17888804 CAGGACACCATCATCGGAGCATCGTCGGAGAATCTAACAGACGACATTAGGGTTACGGTGATCGT
455 CAGGACACCATCATCGGAGCATCGTCGGAGAATCTAACAGACGACATTAGGGTTACGGTGATCGT
17888869 GGGTGCCGGAGGGGGGGT
520 GGGTGCCGGAGGGGGGGT
* * * * * *
17888887 GTGCGCACATGATGTGCGATGGTTGCTGGTACTTGGCCCTTATGTTGGCCCCTTATCCCTCATTA
1 GTGCACACATGATGTACGATGGGTGCTGGTACTTGGCCCATATATTGGCCCCTTATCCCTCATCA
17888952 AACCTCAAGAACTCACACCCCCTTGAAA-AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
66 AACCTCAAGAACTCACACCCCCTT-AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
17889016 ATTAAAGTGTCTAAAATAGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGGTT
130 ATTAAAGTGTCTAAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGGTT
* * * *
17889080 TTAGTAGAAT-TTTTTGTGCTTGCCAACAAAAATACAAGGATCATGTCTATCAAGTTTGGGGCTA
195 TTAGTAGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * *
17889144 AAACTT-CTACCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAA
260 AAA-TTCCTACCGAAAAAATTTAAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAA
*
17889208 TAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTA
324 TAGAAAAAGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTA
*
17889273 CAAGCAATAAAAATGGCATTGGCACGTAGAAATATGAAGATG
389 CAAGCAATAAAAATGGCATTGGCACGCAGAAATATGAAGATG
17889315 CACCTAAACC
Statistics
Matches: 388, Mismatches: 37, Indels: 8
0.90 0.09 0.02
Matches are distributed among these distances:
535 198 0.51
536 49 0.13
537 138 0.36
538 3 0.01
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (537 bp):
GTGCACACATGATGTACGATGGGTGCTGGTACTTGGCCCATATATTGGCCCCTTATCCCTCATCA
AACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
TTAAAGTGTCTAAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGGTTT
TAGTAGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
AATTCCTACCGAAAAAATTTAAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATA
GAAAAAGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACA
AGCAATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCTGGTGTCGCATTTTTCTTCACC
AGGACACCATCATCGGAGCATCGTCGGAGAATCTAACAGACGACATTAGGGTTACGGTGATCGTG
GGTGCCGGAGGGGGGGT
Found at i:17889398 original size:12 final size:12
Alignment explanation
Indices: 17889381--17889412 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
17889371 TCAGGGTAGT
17889381 GCCTGCTCGCGC
1 GCCTGCTCGCGC
*
17889393 GCCTGCCCGCGC
1 GCCTGCTCGCGC
17889405 GCCTGCTC
1 GCCTGCTC
17889413 TTTTCGTCGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.00, C:0.53, G:0.31, T:0.16
Consensus pattern (12 bp):
GCCTGCTCGCGC
Found at i:17890494 original size:26 final size:26
Alignment explanation
Indices: 17890458--17890510 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17890448 GTTGACTTAG
17890458 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17890484 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17890510 G
1 G
17890511 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17891175 original size:12 final size:12
Alignment explanation
Indices: 17891158--17891189 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
17891148 TCAGGGTAGT
17891158 GCCTGCTCGCGC
1 GCCTGCTCGCGC
*
17891170 GCCTGCCCGCGC
1 GCCTGCTCGCGC
17891182 GCCTGCTC
1 GCCTGCTC
17891190 TTTTCGTCGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.00, C:0.53, G:0.31, T:0.16
Consensus pattern (12 bp):
GCCTGCTCGCGC
Found at i:17892295 original size:26 final size:26
Alignment explanation
Indices: 17892243--17892295 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17892233 GTTAACTTAG
* ***
17892243 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAAAATAA
17892269 GCATACGGAGTTCATTCCCAAAATAA
1 GCATACGGAGTTCATTCCCAAAATAA
17892295 G
1 G
17892296 ATCAGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAAAATAA
Found at i:17892675 original size:902 final size:899
Alignment explanation
Indices: 17888777--17897611 Score: 10584
Period size: 900 Copynumber: 9.9 Consensus size: 899
17888767 AAATATGAAG
* * ** * * ** * *
17888777 ATGTGCTGGTGTCGCATTTTTCTTCACCAGGACACCATCATCGGAGCATCGTCGGAGAATCTAAC
1 ATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGAC
* * * * * * *
17888842 AGACGACATTAGGGTTACGGTGATCGTGGGTGCCGGAGGGGGGGTGTGCGCACATGATGTGCGAT
66 CGGCGGCATTGGGGTTCCGGCGATCG-GGGGGCC----GGGGGGTGTGCGCACATGATGTGCGAT
* * * * *
17888907 GGTTGCTGGTACTTGGCCCTTATGTTGGCCCCTTATCCCTCATTAAACCTCAAGAACTCACACCC
126 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
17888972 CCTTGAAA-AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATAGG
191 CCTT-AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* *
17889036 GACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGGTTTTAG-TAGAA-TTTTTTGTG
255 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-GAATTTTTTTGTG
* * * * * *
17889098 CTTGCCAACAAAAATACAAGGATCATGTCTATCAAGTTTGGGGCTAAAACTTCTACCGAAAAAAT
319 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * *
17889163 TTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGC
384 TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* *
17889228 CATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCAATAAAAATGGCATT
449 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* ** *
17889293 GGCACGTAGAAATATGAAGATGCACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACA
514 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * *
17889358 TCCCGTCTCTCTGTCAGG-GTAGTGCCTGCTCGCGCGCCTGCCCGCGCGCCTGCTCTTTTCGTCG
579 TCCCGTCTCTCTGGCCGGCGTAGTG-C--C-C-C-CGCC-G-CC-CGC-TC-GCTCGTTTCGTCG
* * * * *
17889422 GTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAACATCAGA-TCAGA-TCAAGGGTTGCGATA
633 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGACT-GAGGGTTGCGGTA
* * ** * *
17889485 GCAGGATCGGCAGCATGCATTGGGGGACCCGACTGATCCCCGGCTTGCGCATCCCGTCCCTCTGG
696 GCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * * ** *
17889550 CTGGTTGAGCACCCGCACATTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
761 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
*
17889615 AAG-AT-C-G-G---A----C---C--AGA-CTG---AG---GA---TTGC-GCAGCACATGCTG
826 AAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTG
17889653 GGCTCGGGC
891 GGCTCGGGC
* * * **
17889662 ATGTGCTGGTGCCATATTTTTCTTCGTCGCGGCACCATCACCGGAGCATCGTCGGAGAACCTGGT
1 ATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGAC
* * ** * * * *
17889727 CGGTGGTATTGGGGTTCTAGCGATCGGGGGGGAC-GAGGG-GTGCACACATGATGTACGATGGGT
66 CGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
* * * * *
17889790 GCTGGTTCTTGGCCCATATATTGGCCCCTTATCCCTCATCAAACCTTGAGAACTCACATCCCCTT
130 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
17889855 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
195 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * * *
17889920 TTTTTTCAAATAGTCACAAAA-CTCGTACACTTC-ATGTTTTTTGCTTAATTTTTTTTTGTGCAT
260 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA-GTTTTTAGCTGAA--TTTTTTTGTGCAT
* * * * * * *
17889983 GTCAGCAAAATTTCCAGGATCACGTCTACCAAGTTTGGGGCCAAGACTCCTTCCAAAAAAATTTT
322 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * * ** * *
17890048 ACACAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACCAGTCGTCTTGCCGT
387 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
* *
17890113 GAAACTTCACGTGAAGGCTTAAGGGAGCATTGTATGAATATACAAGCCATAAAAATGGCATTGGC
452 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * * * *
17890178 ATGCAGAAATATGATGATGTGCCTAAGCCCACGTACCACCCTATCGATCCGCAGCTTGCGCATCC
517 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * *
17890243 CGTCTCTCTGGCCGGCGTAGTG----C-CTGCCCGCCCGCTCGTTTCATCGATTGGCTTAGGCAT
582 CGTCTCTCTGGCCGGCGTAGTGCCCCCGCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCAT
** * * *
17890303 ACGGAGTTCATTCCCAGTCTAAGATTTGACCGGA-TCGAGGGTTGCAGTAGCAGGATCGGCAGCA
647 ACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACT-GAGGGTTGCGGTAGCAGGATCGGTAGCA
* * ** * *
17890367 CGCAAAGGGGGACCCGACCGATCCTCGGCTTGCGCATCTTGCCCCTCTGGTCGGCTGAGCGCTCG
711 CGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
*
17890432 CACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
776 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* * * * ** * * *
17890497 ATTTCCAGTCTAAGATCGGATCAGACCGACGGTTATGGTAGCACATGTTGGGCTCGAGC
841 ATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * **
17890556 ATGTGCTGGTGCTGTATTTTTCTTCATCGGGGCGCCATCATCGGAGCATCGTCGGAGAACCTGAC
1 ATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGAC
* * * * * *
17890621 CGACGGCGTTCGGGTTCCGACGATTGGGGGGGCCGGGGGGGATGTGCGCACATGATGTGTGATGG
66 CGGCGGCATTGGGGTTCCGGCGA-TCGGGGGGCC-GGGGGG-TGTGCGCACATGATGTGCGATGG
* * * *
17890686 GTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACTTTGAGAACTCACACCCCC
128 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* *
17890751 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATAGGGAC
193 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * *
17890816 AC-TTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGGTTTTAG-TAGAA-TTTTTTGTGCTT
258 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-GAATTTTTTTGTGCAT
* * * * *
17890878 GCCAACAAAAATACAAGGATCATGTCTATCAAGTTTGGGGCTAAAACTTCTACCGAAAAAATTTT
322 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * *
17890943 AAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCAT
387 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
* *
17891008 GAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCAATAAAAATGGCATTGGC
452 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* ** *
17891073 ACGTAGAAATATGAAGATGCACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCC
517 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * *
17891138 CGTCTCTCTGTCAGG-GTAGTGCCTGCTCGCGCGCCTGCCCGCGCGCCTGCTCTTTTCGTCGGTT
582 CGTCTCTCTGGCCGGCGTAGTG-C--C-C-C-CGCC-G-CC-CGC-TC-GCTCGTTTCGTCGGTT
* * * * *
17891202 GGCTTAGGCATATGGAGTTCATTCCCAGTCTAACATCAGA-TCAGA-TCAAGGGTTGCGATAGCA
636 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGACT-GAGGGTTGCGGTAGCA
* * ** * * *
17891265 GGATCGGCAGCATGCATTGGGGGACCCGACTGATCCCCGGCTTGCGCATCCCGTCCCTCTGGCTG
699 GGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * ** *
17891330 GTTGAGCACCCGCACATTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---
764 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* *
17891390 C-TA---AG---------A-TC---G----GACCAGACCGAGGGTTACGACAGCACATGCTGGGC
829 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGC
*
17891434 TCGAGC
894 TCGGGC
* * * *
17891440 ATGTGCTGGTGCCGTATTTTTCTTCATCGGGACACCATCGCCGAAGCATCGTCGGAGAACCTGAT
1 ATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGAC
* * * * *
17891505 TGGCGGCGTTGGGGTTCCGGTGAACGGGGGGCCGGGGGGTATGCGCACATGATGTGCGATGGGTG
66 CGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * *
17891570 CTGGTACTTGGCTCTTATAGTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAAACCCCCTTA
131 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * *
17891635 AAGAGCATTTTAGATTTTATAGGTTTGCTGCCAGCAGCCATTAAAGTGTCTGAAATGGGGACACT
196 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
*
17891700 TTTTTCAAATGGTCACAAAATCTTGAACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
261 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * ** * *
17891765 AAAAAAATACAAGGATCATGTCTACCAAGTTCAGGGCCAAAAATCCTTCCGAAAAAATTTTAAAC
326 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
* * *
17891830 AATCCCGAACCGTGAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAA
391 AATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* **
17891895 CTTCACGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAT
456 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
* *
17891960 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTTTTGATCCACGGCTTGCGCATCCCGTC
521 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
** * * *
17892025 TCTCTGATCGGCGTAGTGCCCACCTGCTCGCCCGCTCGCTCGTTTTGTCGGTTGGCTCAAGCAT-
586 TCTCTGGCCGGCGTAGTGCCC-CC-GC-CGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATA
** * ** *
17892089 CAAAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTACGACAGCAGGATCGGTAGCACA
648 CGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGGTAGCAGGATCGGTAGCACG
* * * * * * * * * *
17892154 CAGTGGGGGACTCGACCGATCCTCGGTTTACGCA-CCTTGCCCGTCTGGTCGACTGAGCGCCCGT
713 CAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCC-CGCCCCTCTGGCCGGCTGAGCGCCCGC
* * *
17892218 ACGCTCATTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCA
777 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
*** ** * * * *
17892283 TTCCCAAAATAAGATCAGACTGGACCGAGGGTTGTGGCAGCATAAGCTGGGCTCTGGC
842 TTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* ** * * *
17892341 ATGTGCTGGTGCTGTATTTGCCTTCGTGGGGGCACCATTGTCGGAGCATCGTCAGGAGAACCTGA
1 ATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTC-GGAGAACCTGA
* * * * * * *
17892406 CTGGCAGCATTGGGGTTTCGGCGATCGGAGGGCCGGGGGGTGTGCACACATGATGTGCAATTGGT
65 CCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
** *
17892471 GCTGGTACTTGGCCCACATATTGGCCCCCTATCCCACATCAAACCTCGAGAACTCACACCCCCTT
130 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
17892536 AAAGAGCATTT-ACGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGTCA
195 AAAGAGCATTTGA-GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * *
17892600 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATGTTTTTGTGCATAC
259 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* *
17892665 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTTCGAAAAAATTTTAA
324 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* ** *
17892730 AAAA-CCCGAACTGCTAAAAA-TTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
389 AAAATCCCGAACCG-TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
17892793 AAACTTCACGTGAAGGCTTGAGGGACCATTGTATGAATTTACAAGCCATAAAAATCGCATTGGCA
453 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
*
17892858 CGCAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
518 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
*** * * * *
17892923 GTCTCTCTGGCTAACATAGTGCCCGCCCGCCAGCCCACACGCTCATTTCGTCGGTTGGCTTAGGC
583 GTCTCTCTGGCCGGCGTAGTG-CC-CCCGCC-GCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGC
* ** ** *** * * *
17892988 ATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCAAGGGTTGCAACAGTAGGATTGGCAGC
645 ATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGGTAGCAGGATCGGTAGC
* ** * ** * *
17893053 ACGCAGAGGGGGACCTGGTCGATCCCCGGCTTGCGTATCCCGCCCCTAAGGTCGGCTGAGCACCC
710 ACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* * * *
17893118 GCACGCTCGTTTCATGGGTTGACTTAGGAATGCGGAGTTCATTCCCAGTCTAAGCATACAGAGTT
775 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * *
17893183 CATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
840 CATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* ** * * * *
17893243 ATGTGCTGGTGTCACATTTTTCTTCGTCGGGGCACCATCGCTGGAGTAACGCCGGAGAACCTGAC
1 ATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGAC
* *
17893308 CAGCGGCATTGGGGTTCCGGCGATCGGGGGGCC-GGGGGTGTGCACACATGATGTGCGATGGGTG
66 CGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* *
17893372 GTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTA
131 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * * * *
17893437 AAGAGCATTTGAGATTTTACCGGTTTGCTGCTAATAGCCATTAAAGTATCTGAAATTGGGACACT
196 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
*
17893502 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCA
261 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
*
17893567 ACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAATTCCTTCCGAAAAAATTTTAAAA
326 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
* * *
17893631 AATCCCGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAA
391 AATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * * *
17893696 CTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTAAAAGCCATAAAAATGGCTTTGGCATGC
456 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
* * * * *
17893761 AGAAATATGAAGATGTGCCAAAACCCACCTACCACACTATCGATCCACGGCATAG-GCATCTCAT
521 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC-TTGCGCATCCCGT
* * * *
17893825 CTCTCTGGCCGACGTAGTG--CCCGTCCGCCCG-T---TTGTTTCGTCAGTTGGCTTAGCCATAC
585 CTCTCTGGCCGGCGTAGTGCCCCCG-CCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * * *
17893884 GGAGTTCATTCCCAGT-TCAAGATTAGACCGAATTGGGGGTTACGGTAGCAGGATCGGTAGCACG
649 GGAGTTCATTCCCAGTCT-AAGATCAGACTGGACTGAGGGTTGCGGTAGCAGGATCGGTAGCACG
** **
17893948 CAGAGGGGGACCC-AGCTTATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCTACTGAGCGCCCGC
713 CAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
17894012 ACGCTCGTTTCGT--G--G--TT-----T-C--A---C-TT---AG-----GCATACGGAGTTCA
777 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * * * *
17894051 TTCCTAGTCTAAGATCGGACCGGACTGAGGGTTGCGACAGCACATGCTGGGCTCGGGC
842 TTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * *
17894109 ATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGAAAAACCTGAC
1 ATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGAC
*
17894174 CGGCGGCATTGGGGTTCCGGTGATCGGGGGGACC-------G-GCGCACATGATGTGCGATGGGT
66 CGGCGGCATTGGGGTTCCGGCGATCGGGGGG-CCGGGGGGTGTGCGCACATGATGTGCGATGGGT
* *
17894231 GTTGGTACTTGGCCCTTTTATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTT
130 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
17894295 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
195 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * ** * *
17894360 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTGTAAG-TG-ACCTTTTTATGAATGC
260 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT-TTAGCTGAATTTTTTTGTGCATGC
* * *
17894423 CAACAAAAACACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAA
324 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
** * ** *
17894488 AAAATCCTAAACCGTAAAAAGTTTCAAAAATGGCAAAAAATAAAAAACGAGTCGTCTTGCCATGA
389 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
17894553 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
454 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
*
17894618 GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
519 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * * *
17894683 TCTCTCTAGCCAGCGTAGTTCCGCCCGCCTGCCTGCTCGCTCGTTTCATCGGTTGGCTTAGGCAT
584 TCTCTCTGGCCGGCGTAGTGCC-CCCGCC-GCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * *
17894748 ACGGAGTTCATTCCCAGTCTAAGATCAGACTGGA-TCGAGGGTTGGGGTAGTAGGATCGGCAGCA
647 ACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACT-GAGGGTTGCGGTAGCAGGATCGGTAGCA
* * * * * ** * *
17894812 CGCAGAGGGGAACCCGATCGATCCCCTGCTTGCGTATCCTGCCCCTCTACCCGACTGAGTGCCCG
711 CGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
*
17894877 TACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---
776 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* * * *
17894935 ------A--C-----T------AGACTGAGGGTTGCGACAGCACATGCTAGGCTCAGGC
841 ATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * * * * * *
17894975 AAGTGCTAGTGCCGCATTTCTCTACGTCGGGTCACCATCGCCAGAGCATCGTCGGAGAACCCGAC
1 ATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGAC
* * * *
17895040 CGGCGACATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGAGCACACATGATGTGCGATGAG
66 CGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGG
*
17895105 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTT
129 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
*
17895170 TAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
194 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* *
17895235 CCTTCTTT-AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTCAATGTTTTTTAG-GCA
259 -CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTT-GTGCA
* * * *
17895298 TGCCAAAAAAAATACAAGGATCACCTTTACCAAGTTTGGGGCCAAAACTACTTCCGAAAAAATTT
321 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* * **
17895363 TAAAAAATCCCTAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
386 TAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
*
17895428 TGAAACTCCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
451 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * * *
17895493 CACACAGAAATATGAAGATGTGCCTAAACCAACCTAGCACCCAATCGATCCACGGCTTGCGTATC
516 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * *
17895558 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCGCCCTCTCGTTTCGTCGGTTAGCTTAG
581 CCGTCTCTCTGGCCGGCGTAGTG-CC-CCCG-CCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAG
* * **
17895623 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGAATGATGGTTATGGTAGCAGGATCGGTA
643 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGGTAGCAGGATCGGTA
* * * * *
17895688 GCATGCAGAGGGGGACCCTG-TCGATCCCCAGCTTGTGCATCCCGCCCCTCTGGCCGGTTGAGCG
708 GCACGCAGAGGGGGACCC-GACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
*
17895752 CCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
772 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * ** * *
17895817 GTTCATTCCCAGTCTAAGATCAAACCAAACCGAGGGTTGCCACAGCACATGCTAGGCTTGGGC
837 GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * * *
17895880 ATGTGCTGGTGCCATATTTTTCTTCATCGGGGCACCATCACCGGACCATCGTCGGAGAACTTGAC
1 ATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGAC
* * * * * * *
17895945 CGGTGACGTTGGAGTTCCAGCGATCGGGGCGGTCGAGGGGGTGTGCGCA-TTGATGTGCGATGGG
66 CGGCGGCATTGGGGTTCCGGCGATCGGGG-GGCCG-GGGGGTGTGCGCACATGATGTGCGATGGG
* * * * * * *
17896009 TGTTGGTACGTCGCCCTTATAATGGCCCCTTATCTCTCATCAAACCTCAAGAACTCACACCCCCT
129 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* **
17896074 TAAAGATCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATTCGGACA
194 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
*
17896139 CTTTTTTCAAATGCTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
259 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * * *
17896204 CAACAAAAATACAAGGATCACATCTACCAAATTTGGGGCCAAAAATCCATCCGAAAAAATTTTAA
324 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* * * * * *
17896269 AAAATCTCGAATC-TCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCCTCTTGCCAAG
389 AAAATCCCGAACCGT-AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
17896333 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAGGGCATTGGCA
453 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * * * *
17896398 TGCAGAAATATGTAGATCTGCCTAAGCCCACCTACCACCCTATCGATCCACGGCTTCCGCATACC
518 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* ** * *
17896463 GTCTCTCTGGCCGACGTAGTG-CCCTTCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATA
583 GTCTCTCTGGCCGGCGTAGTGCCCCCGCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * ** * * *
17896527 CGGAGTTCATTCCCAGTCTAAGACCGGACTGGACCGAGGGTTATGGCAGTAGGATTC-ATAGCAC
648 CGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGGTAGCAGGA-TCGGTAGCAC
* * * * * *
17896591 GCAGAGGGGGACCCGATCGATCCTCGGCCTGCGCATCCCGCCCCTCTGGCCGACTAAGCGCCTGC
712 GCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
* * **
17896656 ACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAAAGTTCA
777 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * * * *
17896721 ATCCCAGTCTAAGATCAGTCCAGACTGAGGGTCGTGGCAGCACATGCTGGGCTCGGGC
842 TTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * * ** *
17896779 ATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCATCATCGTCGGAGCATCACCGAAGAACCTGAC
1 ATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGAC
* *
17896844 CGACGGCATTGGGGTTCCAGCGATCGGGGGGGCCGACGGGGGTGTGCGCACATGATGTGCGATGG
66 CGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCCG--GGGGGTGTGCGCACATGATGTGCGATGG
* * * * *
17896909 ATGCTGCTACTTCGCCCTTATATTGGCCCCCTATGCCTCATCAAACCTCTAGAACTCACACCCCC
128 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
*
17896974 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAAATGGGGAC
193 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
17897039 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
258 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* ** **
17897104 CCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTTCTTTTGAGGAAATTTTA
323 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
17897168 AAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATA-AAAGACGAGTCGTCTTGCCAT
388 AAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAA-ACGAGTCGTCTTGCCAT
*
17897232 GAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
452 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * *
17897297 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCATGGCTTGCGCATCC
517 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* ** *
17897362 CGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCAAGCTCACTCGTTTCGTCGGTTGGCTTAGG
582 CGTCTCTCTGGCCGGCGTAGTG-CC-CCCG-CCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * ** * *
17897427 CATACAGAGTTCTTTCCTAATCTAAGATCAGACCGGACAAAGGGTTGTGGTAGCAGGATCGATAG
644 CATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGGTAGCAGGATCGGTAG
* * * * * * ** *
17897492 CACACAAAGGGGGACCCGGCCGATCCTCGGCTTGCACATCCCGCCCCTCCGGTTGGCTAAGCGCC
709 CACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* * * *
17897557 TGCACACTCGTTTCATGGGTTGACTTAGTCATACGGAGTTCATTCCCAGTCTAAG
774 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
17897612 ATTGGATCAG
Statistics
Matches: 6839, Mismatches: 895, Indels: 413
0.84 0.11 0.05
Matches are distributed among these distances:
858 47 0.01
859 324 0.05
860 79 0.01
861 3 0.00
862 8 0.00
863 1 0.00
865 1 0.00
866 402 0.06
867 189 0.03
868 5 0.00
869 4 0.00
870 4 0.00
871 4 0.00
872 4 0.00
873 1 0.00
874 6 0.00
875 216 0.03
876 126 0.02
877 11 0.00
878 275 0.04
879 356 0.05
880 38 0.01
881 148 0.02
882 302 0.04
883 280 0.04
884 123 0.02
885 72 0.01
886 3 0.00
887 4 0.00
888 3 0.00
889 1 0.00
890 4 0.00
891 5 0.00
892 136 0.02
893 3 0.00
894 105 0.02
895 253 0.04
896 12 0.00
897 23 0.00
898 161 0.02
899 367 0.05
900 660 0.10
901 567 0.08
902 559 0.08
903 273 0.04
904 368 0.05
905 121 0.02
906 1 0.00
907 2 0.00
908 4 0.00
909 2 0.00
910 173 0.03
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (899 bp):
ATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGAC
CGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
AATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
TCTCTGGCCGGCGTAGTGCCCCCGCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
AGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGGTAGCAGGATCGGTAGCACGCAG
AGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
CAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
Found at i:17895818 original size:26 final size:26
Alignment explanation
Indices: 17895782--17895834 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17895772 GTTGACTTAG
17895782 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17895808 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17895834 G
1 G
17895835 ATCAAACCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17896863 original size:899 final size:899
Alignment explanation
Indices: 17894045--17897611 Score: 4696
Period size: 904 Copynumber: 4.0 Consensus size: 899
17894035 AGGCATACGG
* * * *
17894045 AGTTCATTCCTAGTCTAAGATCGGACCGGACTGAGGGTTGCGACAGCACATGCTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGACAGCACATGCTAGGCTCGGGCA
** * * *
17894110 TGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGAAAAACCTGACC
66 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACC
* * * *
17894175 GGCGGCATTGGGGTTCCGGTGATCGGGGGGACC--------G-GCGCACATGATGTGCGATGGGT
131 GGCGACATTGGGGTTCCAGCGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGT
* * * *
17894231 GTTGGTACTTGGCCCTTTTATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTT
196 GCTGGTACTTCGCCCTTATATTGGCCCCCTAT-CCTCATCAAACCTCAAGAACTCACACCCCCTT
17894295 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
260 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * ** * *
17894360 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTGTAAG-TG-ACCTTTTTATGAATGC
325 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT-TTAGCTGAATTTTTTTGTGCATGC
* * *
17894423 CAACAAAAACACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAA
389 CAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTACTTCCGAAAAAATTTTAA
** * * ** *
17894488 AAAATCCTAAACCGTAAAAAGTTTCAAAAATGGCAAAAAATAAAAAACGAGTCGTCTTGCCATGA
454 AAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
*
17894553 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
519 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
*
17894618 GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
584 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * * *
17894683 TCTCTCTAGCC-AGCGTAGT-TCCGCCCGCCTGCCTGCTCGCTCGTTTCATCGGTTGGCTTAGGC
649 TCTCTCTGGCCGA-CGTAGTGCCCGCCCGCC--CC-GCCCACTCGTTTCGTCGGTTGGCTTAGGC
** * **
17894746 ATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATC-GAGGGTTGGGGTAGTAGGATCGGCAG
710 ATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGA-CAGAGGGTTATGGTAGCAGGATCGATAG
* * * * * ** * * *
17894810 CACGCAGAGGGGAACCCGATCGATCCCCTGCTTGCGTATCCTGCCCCTCTACCCGACTGAGTGCC
774 CACGCAGAGGGGGACCCG-TCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCGCC
* * *
17894875 CGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-T---A
838 TGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAA
* *
17894928 AG---------A-TC---G----GACTAGACTGAGGGTTGCGACAGCACATGCTAGGCTCAGGCA
1 AGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGACAGCACATGCTAGGCTCGGGCA
* * * * * * *
17894976 AGTGCTAGTGCCGCATTTCTCTACGTCGGGTCACCATCGCCAGAGCATCGTCGGAGAACCCGACC
66 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACC
* * * * *
17895041 GGCGACATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGAGCACACATGATGTGCGATGAGT
131 GGCGACATTGGGGTTCCAGCGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGT
* * *
17895106 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTT
196 GCTGGTACTTCGCCCTTATATTGGCCCCCTAT-CCTCATCAAACCTCAAGAACTCACACCCCCTT
*
17895171 AAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
260 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA-
* *
17895236 CTTCTTT-AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTCAATGTTTTTTAG-GCAT
324 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTT-GTGCAT
* * *
17895299 GCCAAAAAAAATACAAGGATCACCTTTACCAAGTTTGGGGCCAAAACTACTTCCGAAAAAATTTT
387 GCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTACTTCCGAAAAAATTTT
* **
17895364 AAAAAATCCCTAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
452 AAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
*
17895429 GAAACTCCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
517 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
** * * * *
17895494 ACACAGAAATATGAAGATGTGCCTAAACCAACCTAGCACCCAATCGATCCACGGCTTGCGTATCC
582 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * *
17895559 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCGCCCTCTCGTTTCGTCGGTTAGCTTAGG
647 CGTCTCTCTGGCCGACGTAGTGCCCGCCCG--C-CCCGCCCACTCGTTTCGTCGGTTGGCTTAGG
* *
17895624 CATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGA-ATGATGGTTATGGTAGCAGGATCGGTA
709 CATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACA-GAGGGTTATGGTAGCAGGATCGATA
* * * * * *
17895688 GCATGCAGAGGGGGACCCTGTCGATCCCCAGCTTGTGCATCCCGCCCCTCTGGCCGGTTGAGCGC
773 GCACGCAGAGGGGGACCC-GTCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCGC
** * **
17895753 CCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
837 CTGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAA
* * * * *
17895816 AGTTCATTCCCAGTCTAAGATCAAACCAAACCGAGGGTTGCCACAGCACATGCTAGGCTTGGGCA
1 AGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGACAGCACATGCTAGGCTCGGGCA
** * * * *
17895881 TGTGCTGGTGCCATATTTTTCTTCATCGGGGCACCATCACCGGACCATCGTCGGAGAACTTGACC
66 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACC
* * * * * *
17895946 GGTGACGTTGGAGTTCCAGCGATCGGGGCGGTCGAGGGGGTGTGCGCA-TTGATGTGCGATGGGT
131 GGCGACATTGGGGTTCCAGCGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGT
* * * *
17896010 GTTGGTACGTCGCCCTTATAATGGCCCCTTATCTCTCATCAAACCTCAAGAACTCACACCCCCTT
196 GCTGGTACTTCGCCCTTATATTGGCCCCCTATC-CTCATCAAACCTCAAGAACTCACACCCCCTT
* **
17896075 AAAGATCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATTCGGACAC
260 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
*
17896140 TTTTTTCAAATGCTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
325 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * * *
17896205 AACAAAAATACAAGGATCACATCTACCAAATTTGGGGCCAAAAATCCATCCGAAAAAATTTTAAA
390 AACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTACTTCCGAAAAAATTTTAAA
* * * * * *
17896270 AAATCTCGAATC-TCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCCTCTTGCCAAGA
455 AAATCCCGAACCAT-AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
*
17896334 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAGGGCATTGGCAT
519 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * * * *
17896399 GCAGAAATATGTAGATCTGCCTAAGCCCACCTACCACCCTATCGATCCACGGCTTCCGCATACCG
584 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
**
17896464 TCTCTCTGGCCGACGTAGTGCCCTTCCG-CCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATAC
649 TCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * *
17896528 GGAGTTCATTCCCAGTCTAAGACCGGACTGGACCGAGGGTTATGGCAGTAGGATTC-ATAGCACG
714 GGAGTTCATTCCCAGTCTAAGATCAGACTGGACAGAGGGTTATGGTAGCAGGA-TCGATAGCACG
* *
17896592 CAGAGGGGGACCCGATCGATCCTCGGCCTGCGCATCCCGCCCCTCTGGCCGACTAAGCGCCTGCA
778 CAGAGGGGGACCCG-TCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCGCCTGCA
*
17896657 CACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAA
842 CACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAA
* * * * * *
17896715 AGTTCAATCCCAGTCTAAGATCAGTCCAGACTGAGGGTCGTGGCAGCACATGCTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGACAGCACATGCTAGGCTCGGGCA
* * * ** *
17896780 TGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCATCATCGTCGGAGCATCACCGAAGAACCTGACC
66 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACC
* * *
17896845 GACGGCATTGGGGTTCCAGCGATCGGGGGGGCCGACGGGGGTGTGCGCACATGATGTGCGATGGA
131 GGCGACATTGGGGTTCCAGCGATCGGGGGGGCCGA-GGGGGTGTGCGCACATGATGTGCGATGGG
* *
17896910 TGCTGCTACTTCGCCCTTATATTGGCCCCCTATGCCTCATCAAACCTCTAGAACTCACACCCCCT
195 TGCTGGTACTTCGCCCTTATATTGGCCCCCTAT-CCTCATCAAACCTCAAGAACTCACACCCCCT
*
17896975 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAAATGGGGACA
259 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
17897040 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
324 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * ** **
17897105 CAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTTCTTTTGAGGAAATTTTAA
389 CAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTACTTCCGAAAAAATTTTAA
*
17897169 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATA-AAAGACGAGTCGTCTTGCCATG
454 AAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAA-ACGAGTCGTCTTGCCATG
*
17897233 AAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
518 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* *
17897298 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCATGGCTTGCGCATCCC
583 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* *
17897363 GTCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCAAGCTCACTCGTTTCGTCGGTTGGCTTAGGC
648 GTCTCTCTGGCCGACGTAGTGCCCGCCCG-CC-C-CGCCCACTCGTTTCGTCGGTTGGCTTAGGC
* * * * * * *
17897428 ATACAGAGTTCTTTCCTAATCTAAGATCAGACCGGACAAAGGGTTGTGGTAGCAGGATCGATAGC
710 ATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACAGAGGGTTATGGTAGCAGGATCGATAGC
* * * * * **
17897493 ACACAAAGGGGGACCCGGCCGATCCTCGGCTTGCACATCCCGCCCCTCCGGTTGGCTAAGCGCCT
775 ACGCAGAGGGGGACCC-GTCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCGCCT
* *
17897558 GCACACTCGTTTCATGGGTTGACTTAGTCATACGGAGTTCATTCCCAGTCTAAG
839 GCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
17897612 ATTGGATCAG
Statistics
Matches: 2341, Mismatches: 276, Indels: 113
0.86 0.10 0.04
Matches are distributed among these distances:
866 121 0.05
870 1 0.00
873 2 0.00
874 2 0.00
875 79 0.03
876 101 0.04
877 7 0.00
878 264 0.11
879 188 0.08
880 3 0.00
881 2 0.00
882 1 0.00
883 2 0.00
884 1 0.00
885 1 0.00
888 2 0.00
897 1 0.00
898 3 0.00
899 332 0.14
900 238 0.10
901 229 0.10
902 4 0.00
903 276 0.12
904 354 0.15
905 127 0.05
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
AGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGACAGCACATGCTAGGCTCGGGCA
TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACC
GGCGACATTGGGGTTCCAGCGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGT
GCTGGTACTTCGCCCTTATATTGGCCCCCTATCCTCATCAAACCTCAAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
ACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTACTTCCGAAAAAATTTTAAAA
AATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
TCTCTGGCCGACGTAGTGCCCGCCCGCCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGG
AGTTCATTCCCAGTCTAAGATCAGACTGGACAGAGGGTTATGGTAGCAGGATCGATAGCACGCAG
AGGGGGACCCGTCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCGCCTGCACACT
CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAA
Found at i:17897702 original size:14 final size:14
Alignment explanation
Indices: 17897683--17897714 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
17897673 TTTTTCTTCG
17897683 TCGGGGCACCATCA
1 TCGGGGCACCATCA
*
17897697 TCGGGGCACCATCG
1 TCGGGGCACCATCA
17897711 TCGG
1 TCGG
17897715 AGCATCACCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.16, C:0.34, G:0.34, T:0.16
Consensus pattern (14 bp):
TCGGGGCACCATCA
Found at i:17898147 original size:14 final size:14
Alignment explanation
Indices: 17898113--17898147 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
17898103 GCATTTTTCT
*
17898113 TCGTCGGGGCACCA
1 TCGTCGTGGCACCA
17898127 TCGTCGTGGCACCA
1 TCGTCGTGGCACCA
17898141 TCGTCGT
1 TCGTCGT
17898148 AGAACTTGCC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.11, C:0.34, G:0.31, T:0.23
Consensus pattern (14 bp):
TCGTCGTGGCACCA
Done.