Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 99 of 195
Found at i:17900694 original size:26 final size:26
Alignment explanation
Indices: 17900663--17900715 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17900653 GTATACTTAG
17900663 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
17900689 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
17900715 G
1 G
17900716 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:17901165 original size:888 final size:889
Alignment explanation
Indices: 17898893--17901362 Score: 3551
Period size: 899 Copynumber: 2.8 Consensus size: 889
17898883 GTTGACATAG
* * * *
17898893 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGA-CAGAGGGTTGCGACACCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCA-AGGGTTGCGGCAGCACATGCTGG
* * * * *
17898957 GCTAGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGTGCCATCATCAGAGCATCGTCGAAA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCTCGGGGT-CCATCATCGGAGCATCGTCGGAG
* * * * *
17899022 AACCTGATCGGTGGCATTGGGGTTCCGGCAATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGT
129 AACTTGAACAGCGGCATTGGGGTTCCGGCGATC-A---------GGGGGTGTGCGCACATGATGT
*
17899087 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCA
184 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
*
17899152 CACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
249 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
17899217 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTG-AATTTTTT
314 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTT
* * *
17899281 GCGCATGCCAACAAAAATACCAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
379 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * *
17899346 AATTTTAAAAAATCCCGAACCG-TAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCATGC
444 AATTTTGAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAG-AAACGAGTCGT-C
*
17899410 -TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGCATTTACAAACCATAAAAATGG
507 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGCATTTACAAGCCATAAAAATGG
17899474 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCGATCGATCCACGGCTTG
572 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCGATCGATCCACGGCTTG
** *
17899539 CGTGT-CTCGTCTCTCTGGCCGGCGTAGTTCCTACCCGCCCGCCCGCCCGCTAATTTCATCTATT
637 CGCATCCT-GTCTCTCTGGCCGGCGTAGTTCCT---CGCCCGCCCGCCCGCTAATTTCATCGATT
** * * * ** *
17899603 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTACAGTATTAGG
698 CACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAAGGTTACAGTAGCAAG
* * *
17899668 ATCGGTAGCACGCAGAGGGGGACCCGACCGACCCCCGGCTAGTGCATCCCGCCCCTCTGGCCGGC
763 ATCGGCAGCACGCAGAGGGGGACCCGACCGACCCCCGACTAGTGCATCCCACCCCTCTGGCCGGC
* * * *
17899733 TGAGCGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCTTACAAAGTTCATTCCCAATCTAA
828 TGAGCACCCACACGCTTGTCTCATGGGTTGACTTAGGCATACAAAGTTCATTCCCAATCTAA
* *
17899795 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGATTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTGCGGCAGCACATGCTGGG
* *** *
17899860 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCCCGAGAAACCATCATCGGAGCATTGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCTCG-GGGTCCATCATCGGAGCATCGTCGGAGA
** * * * *
17899925 ACTTG-ACTAGCGATATTGGGGTTCCGTCGATGGGGGGCCGGCGGGTGTGCGCACACGATGTGTG
130 ACTTGAAC-AGCGGCATTGGGGTTCCGGCGAT------CAGG-GGGTGTGCGCACATGATGTGCG
*
17899989 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
187 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
*
17900054 CCCCTTAAAGAGCAATTGAGATTTTACAGGTTTG-TGCCAGTAGCCATTAAAGTGTCTGAAATGG
252 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
17900118 GGACACTTTTTTCGAATGGTCACAAAATATTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
317 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTGTG
* * *
17900183 CATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCTAAAACTCCTACTGAAAAAAT
382 CATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
17900248 TTTGAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAACGAGTCGTCTTGCC
447 TTTGAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAACGAGTCGTCTTGCC
*
17900313 ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGCATTTACAAGCCATAAAAATGGCATTG
512 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGCATTTACAAGCCATAAAAATGGCATTG
17900378 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCGATCGATCCACGGCTTGCGCAT
577 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCGATCGATCCACGGCTTGCGCAT
* * * * * *
17900443 CCTGTCTCTCTGGCCGACGTAGTTCCT-GCCTGCCCGTCTGCTCATTTCATCGGTTCACTTAGGC
642 CCTGTCTCTCTGGCCGGCGTAGTTCCTCGCCCGCCCGCCCGCTAATTTCATCGATTCACTTAGGC
* ***
17900507 ATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACTGAAGGTTGTGGTAGCAAGATCGGCAGC
707 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAAGGTTACAGTAGCAAGATCGGCAGC
* * * * * *
17900572 ACGCAGA-GGGGACTCGGCTGATCCTCGACTTGTGCATCCCACCCCTCTGGCCGGCTGAGCACCC
772 ACGCAGAGGGGGACCCGACCGACCCCCGACTAGTGCATCCCACCCCTCTGGCCGGCTGAGCACCC
* * **
17900636 ATACG-TTCGTCTCGTGGGTAT-ACTTAGGCATACGGAGTTCATTCCCAATCTAA
837 ACACGCTT-GTCTCATGGGT-TGACTTAGGCATACAAAGTTCATTCCCAATCTAA
* *
17900689 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTACGGCAGCACATGCTGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTGCGGCAGCACATGCTGGG
* * * **
17900754 CTCGGGCTTGTGCTGGTGCCACATTTTTCTTCCTCGGGGCTCCATCGTCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCTCGGGG-TCCATCATCGGAGCATCGTCGGAGA
*
17900819 ACTTGAACAGCGGCACTGGGGTTCCGGCGATCAGGGGGTGTGCGCACATGATGTGCGATGGGTGC
130 ACTTGAACAGCGGCATTGGGGTTCCGGCGATCAGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* * * *
17900884 TGGTACTTGGCCCTTTTATTGGCCCCCTATCCCTCGTCGAACCTCAAGAGCTCACACCCCCTTAA
195 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAA
*
17900949 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGGCACTT
260 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* *
17901014 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTGTGCAGGACAA
325 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAA
**
17901079 CAAAAATACAAGGATCATGTCTACCAAGTTTGGCTCCAAAACTCCTTCCGAAAAAATTTTGAAAA
390 CAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTGAAAA
* * *
17901144 ATCCCAAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAAAAAATGAGTCGTCTTGCCATGAAAC
455 ATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAAT-AGAAACGAGTCGTCTTGCCATGAAAC
* *
17901209 TTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
519 TTCACGTGAAGGCTTAAGGGACCATTGTATGCATTTACAAGCCATAAAAATGGCATTGGCATGCA
* * ** *
17901274 AAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCTGGGCTTGCGCATCCCGTCT
584 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCGATCGATCCACGGCTTGCGCATCCTGTCT
* *
17901339 GTCTGGCCGGCGTAGTGCC-CGCCC
649 CTCTGGCCGGCGTAGTTCCTCGCCC
17901363 TCACGTCTAC
Statistics
Matches: 1410, Mismatches: 137, Indels: 55
0.88 0.09 0.03
Matches are distributed among these distances:
887 113 0.08
888 197 0.14
889 165 0.12
893 3 0.00
894 227 0.16
895 93 0.07
898 83 0.06
899 366 0.26
900 28 0.02
901 1 0.00
902 131 0.09
903 2 0.00
908 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (889 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCTCGGGGTCCATCATCGGAGCATCGTCGGAGAA
CTTGAACAGCGGCATTGGGGTTCCGGCGATCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAA
GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAAC
AAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTGAAAAA
TCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAACGAGTCGTCTTGCCATGAAACTT
CACGTGAAGGCTTAAGGGACCATTGTATGCATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
AATATGAAGATGTGCCTAAACCCACCTACCACCCGATCGATCCACGGCTTGCGCATCCTGTCTCT
CTGGCCGGCGTAGTTCCTCGCCCGCCCGCCCGCTAATTTCATCGATTCACTTAGGCATACGGAGT
TCATTCCCAGTCTAAGATCAGACCAGACTGAAGGTTACAGTAGCAAGATCGGCAGCACGCAGAGG
GGGACCCGACCGACCCCCGACTAGTGCATCCCACCCCTCTGGCCGGCTGAGCACCCACACGCTTG
TCTCATGGGTTGACTTAGGCATACAAAGTTCATTCCCAATCTAA
Found at i:17901577 original size:269 final size:269
Alignment explanation
Indices: 17901097--17901631 Score: 849
Period size: 269 Copynumber: 2.0 Consensus size: 269
17901087 CAAGGATCAT
* *
17901097 GTCTACCAAGTTTGGCTCCAAAACTCCTTCCGAAAAAATTTTGAAAAATCCCAAACCGCAAAAAG
1 GTCTACCAAGTTTGGCT-CAAAACTCCATCCAAAAAAATTTTGAAAAATCCCAAACCGCAAAAAG
* * * *
17901162 TTTTGAAAATCGTGAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAGG
65 TTTTGAAAACCGTAAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
17901227 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCC
130 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCC
* ** * * * *
17901292 TAAACCCACCTACCACCCTATCGATCCTGGGCTTGCGCATCCCGTCTGTCTGGCCGGCGTAGTGC
195 TAAACCCACCTACCACCCGATCGATCCACGGCTTACGCATCCCATCTCTCTGGCCGGCGTAATGC
17901357 CCGCCCTCAC
260 CCGCCCTCAC
*
17901367 GTCTACCAAGTTTGTGGCT-AAAACTCCATCCAAAAAAATTTTGAAAAATCCCGAACCGCAAAAA
1 GTCTACCAAG-TT-TGGCTCAAAACTCCATCCAAAAAAATTTTGAAAAATCCCAAACCGCAAAAA
* *
17901431 GTTTTGAAAACCGTAAAAAAT-AGAAACGAGTCGTCTTGTCATGAAACTTCACGTGAAGGCTTAA
64 GTTTTGAAAACCGTAAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* *
17901495 GGGACCATTGTATGCATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGC
129 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGC
* *
17901560 CTAAACCCACCTACCACCCGATCGATCCACGGCTTACGCATCCTATCTCTCTGGCCGGCGTAATT
194 CTAAACCCACCTACCACCCGATCGATCCACGGCTTACGCATCCCATCTCTCTGGCCGGCGTAATG
17901625 CCCGCCC
259 CCCGCCC
17901632 GCCCGCTCAT
Statistics
Matches: 243, Mismatches: 20, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
269 165 0.68
270 71 0.29
271 2 0.01
272 5 0.02
ACGTcount: A:0.33, C:0.25, G:0.19, T:0.24
Consensus pattern (269 bp):
GTCTACCAAGTTTGGCTCAAAACTCCATCCAAAAAAATTTTGAAAAATCCCAAACCGCAAAAAGT
TTTGAAAACCGTAAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCT
AAACCCACCTACCACCCGATCGATCCACGGCTTACGCATCCCATCTCTCTGGCCGGCGTAATGCC
CGCCCTCAC
Found at i:17901854 original size:26 final size:26
Alignment explanation
Indices: 17901818--17901870 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17901808 GTTAACTTAG
17901818 GCATACGGAGTTCAATCCCAATCTAA
1 GCATACGGAGTTCAATCCCAATCTAA
* *
17901844 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAATCTAA
17901870 G
1 G
17901871 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAATCTAA
Found at i:17903752 original size:26 final size:26
Alignment explanation
Indices: 17903722--17903774 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17903712 GTTGACTTAG
17903722 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
**
17903748 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
17903774 G
1 G
17903775 ATCGAACCGT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:17904222 original size:26 final size:26
Alignment explanation
Indices: 17904186--17904238 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17904176 GTTGACTTAG
*
17904186 GCATACAGAGTTGATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
17904212 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17904238 G
1 G
17904239 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17906051 original size:26 final size:26
Alignment explanation
Indices: 17906015--17906067 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17906005 GTTGACTTAG
17906015 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17906041 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17906067 G
1 G
17906068 ATTGGACCTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17907805 original size:26 final size:26
Alignment explanation
Indices: 17907769--17907821 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17907759 GTTGACTTAG
17907769 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
17907795 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
17907821 G
1 G
17907822 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:17908706 original size:26 final size:26
Alignment explanation
Indices: 17908670--17908722 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17908660 GTTGACTTAG
17908670 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
17908696 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
17908722 G
1 G
17908723 ATCAAACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:17910755 original size:735 final size:738
Alignment explanation
Indices: 17909536--17910877 Score: 2099
Period size: 735 Copynumber: 1.8 Consensus size: 738
17909526 ATAGGGGGCT
* * * * *
17909536 GGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTCTATTAGCCCCTTATCC
1 GGGGGGTGTACGCACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTAGCCCCCTATCC
* ** * *
17909601 GTCATCAAACCTTGAGAACTCATACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
66 CTCATCAAACCTCAAGAACTCACACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * *
17909666 GTAGCCATTAAAGTGTCTGAAATGGTGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
131 GTAGCCAATAAAGTGTCTGAAATGGTGACACTTTTTTCAAATGGCCAAAAAATCTTGTACACTTC
* * *
17909731 GAGTTTTAAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGTATGACGTCCACCAAGTTTG
196 GAGTTTTAAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCCACCAAGTTTG
* * * *
17909796 GGGCCAAAATTCCTTTCGAAAAAATTATAAAAAATCCTGAACTGCAAAAAGTTTCAAAAATCATG
261 GGGCCAAAACTCCTTTCCAAAAAATTATAAAAAATCCCGAACTACAAAAAGTTTCAAAAATCATG
* *
17909861 AAAAATAGAAAACGAGTCGTCTTGCCTTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
326 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGATTAAGGGACCATTGTATGA
*
17909926 ATTTACAAGCCATAAAAATGGCATTTACGCATAGAAATATGAAGATGTGCCTAAACCCACCTACC
391 ATTTACAAGCCATAAAAATGGCATTTACGCATAGAAATATGAAGATGTACCTAAACCCACCTACC
*
17909991 ACCCTATCAATCAACGGCTTGCACATCCCGTCTCTCTGGCCGGCGTA-G-TGCCCG-C-CCGCCC
456 ACCCTATCAATCAACGGCTTGCACATCCCGTCTCTCTGGCCGGCGTAGGCTGCCCGCCTCCACCC
* *
17910052 GCTCATTTCATCGATTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGA
521 GCTCATTTCATCGATTGGCTTAGGAATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGA
*
17910117 GGGTTGTGGCAGCAGGATCGACAGCACACAGAGGGGGAGCTGATTGATCCCTAACATGTGCATCC
586 AGGTTGTGGCAGCAGGATCGACAGCACACAGAGGGGGAGCTGATTGATCCCTAACATGTGCATCC
17910182 CGCCCCTCTGGTCGGCTGAGCACCCGTACACTCGTTTCGTGGGTTGACTTAGGCGTACGGATTGG
651 CGCCCCTCTGGTCGGCTGAGCACCCGTACACTCGTTTCGTGGGTTGACTTAGGCGTACGGATTGG
17910247 GGTTCCAGTGATCAGGGGGCCGG
716 GGTTCCAGTGATCAGGGGGCCGG
*
17910270 GGGGGGTGTACGCACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCC
1 GGGGGGTGTACGCACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTAGCCCCCTATCC
17910335 CTCATCAAACCTCAAGAACTCACACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
66 CTCATCAAACCTCAAGAACTCACACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
17910400 GTAGCCAATAAAGTGTCTGAAATGG-GTACACTTTTTTCAAATGGCCAAAAAATCTTGTACACTT
131 GTAGCCAATAAAGTGTCTGAAATGGTG-ACACTTTTTTCAAATGGCCAAAAAATCTTGTACAC-T
* ** * *
17910464 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACCAAAATACAGGGATCACATCTACCAAGTT
194 TCGAGTTTTAAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCCACCAAGTT
* *
17910529 TGGGGACC-AAACT-GTTTCCAAAAAAGTTATAAAAAATCCCGAACTATAAAAAGTTTCAAAAAT
259 TGGGG-CCAAAACTCCTTTCCAAAAAA-TTATAAAAAATCCCGAACTACAAAAAGTTTCAAAAAT
* *
17910592 TATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGATTAAGGGATCATTGT
322 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGATTAAGGGACCATTGT
*
17910657 ATGAATTTACAAGCCATAAAAATGGCA-TT-GGCATGCAGAAATATGAAGATGTACCTAAACCCA
387 ATGAATTTACAAGCCATAAAAATGGCATTTACGCAT--AGAAATATGAAGATGTACCTAAACCCA
* ** * *
17910720 CCTACCACCTTATCGGTCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGC
450 CCTACCACCCTATCAATCAACGGCTTGCACATCCCGTCTCTCTGGCCGGCGTAG-G-CTGCCCG-
** *
17910785 CCTTCCACCCGCTTGTTTCGTCGATTGGCTTAGGAATACAGAGTTCATTCCCAGTCTAAGATCAG
512 CC-TCCACCCGCTCATTTCATCGATTGGCTTAGGAATACAGAGTTCATTCCCAGTCTAAGATCAG
* *
17910850 ACCGGACCGAAGGTTGTGGTAGTAGGAT
576 ACCGGACCGAAGGTTGTGGCAGCAGGAT
17910878 TGGTAGCACG
Statistics
Matches: 546, Mismatches: 48, Indels: 19
0.89 0.08 0.03
Matches are distributed among these distances:
733 5 0.01
734 188 0.34
735 263 0.48
736 2 0.00
737 1 0.00
739 6 0.01
741 1 0.00
743 80 0.15
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (738 bp):
GGGGGGTGTACGCACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTAGCCCCCTATCC
CTCATCAAACCTCAAGAACTCACACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
GTAGCCAATAAAGTGTCTGAAATGGTGACACTTTTTTCAAATGGCCAAAAAATCTTGTACACTTC
GAGTTTTAAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCCACCAAGTTTG
GGGCCAAAACTCCTTTCCAAAAAATTATAAAAAATCCCGAACTACAAAAAGTTTCAAAAATCATG
AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGATTAAGGGACCATTGTATGA
ATTTACAAGCCATAAAAATGGCATTTACGCATAGAAATATGAAGATGTACCTAAACCCACCTACC
ACCCTATCAATCAACGGCTTGCACATCCCGTCTCTCTGGCCGGCGTAGGCTGCCCGCCTCCACCC
GCTCATTTCATCGATTGGCTTAGGAATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGA
AGGTTGTGGCAGCAGGATCGACAGCACACAGAGGGGGAGCTGATTGATCCCTAACATGTGCATCC
CGCCCCTCTGGTCGGCTGAGCACCCGTACACTCGTTTCGTGGGTTGACTTAGGCGTACGGATTGG
GGTTCCAGTGATCAGGGGGCCGG
Found at i:17911008 original size:26 final size:26
Alignment explanation
Indices: 17910978--17911029 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
17910968 TTGACTTAGA
* *
17910978 CATACGGAGTTCATTCGCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
17911004 CATACAGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
17911030 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAG
Found at i:17911686 original size:4 final size:4
Alignment explanation
Indices: 17911677--17911702 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
17911667 CCGACGTAGT
17911677 GCCC GCCC GCCC GCCC GCCC GCCC GC
1 GCCC GCCC GCCC GCCC GCCC GCCC GC
17911703 TCGTTTCTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.00, C:0.73, G:0.27, T:0.00
Consensus pattern (4 bp):
GCCC
Found at i:17912538 original size:26 final size:26
Alignment explanation
Indices: 17912508--17912560 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17912498 GATGACTTAG
17912508 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
17912534 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17912560 G
1 G
17912561 ATCGGTCTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17914612 original size:311 final size:312
Alignment explanation
Indices: 17914021--17914632 Score: 947
Period size: 311 Copynumber: 2.0 Consensus size: 312
17914011 AGTTTGGCTT
* **
17914021 CAAAACTCCTTTCGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCGTGAAAA
1 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCGTGAAAA
* * * *
17914086 ATAGAAGACGAGTCGTCTTGCCGTGAAACTTAACGTGAAGGCTTAAGGGACCATTGTATGAATTT
66 ATAGAAAACGAGTAGTCTTGCCATGAAACATAACGTGAAGGCTTAAGGGACCATTGTATGAATTT
17914151 ACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
131 ACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * ** * * **
17914216 TATCAATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTGGTGCCCGCTCACCCGCCCTTCA
196 TATCAATCCACGACTTGCGCATCCCGTCTCTCTGGCCGACGTAATGCCAGCCCACCCGCCCGCCA
17914281 GCTCGTTTCGTCAATTGGCTTAGGCATACGAAGTTCATTCCAAGTTTGGGGC
261 GCTCGTTTCGTCAATTGGCTTAGGCATACGAAGTTCATTCCAAGTTTGGGGC
*
17914333 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTCCAAAATCGTGAAAA
1 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCGTGAAAA
* * *
17914398 ATAGAAAATGAGTAGTCTTGCCATGAAACATCA-TTGAAGGCTTAAGGGACCATTGTATGAATTT
66 ATAGAAAACGAGTAGTCTTGCCATGAAACATAACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* *
17914462 ACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAATATGTGCCTAAACCCACCTACCACCC
131 ACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * ** *
17914527 TATCGATCCATGACTTGCGCATCCCGTCTCTCTGGCCGACGTAATGCCAGCCCGGCCGCCCGCCC
196 TATCAATCCACGACTTGCGCATCCCGTCTCTCTGGCCGACGTAATGCCAGCCCACCCGCCCGCCA
* * * *
17914592 GCTTGTTTTGTCAGTTGGCTTAGGCATACGGAGTTCATTCC
261 GCTCGTTTCGTCAATTGGCTTAGGCATACGAAGTTCATTCC
17914633 TAGTCTAAGT
Statistics
Matches: 270, Mismatches: 30, Indels: 1
0.90 0.10 0.00
Matches are distributed among these distances:
311 182 0.67
312 88 0.33
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (312 bp):
CAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCGTGAAAA
ATAGAAAACGAGTAGTCTTGCCATGAAACATAACGTGAAGGCTTAAGGGACCATTGTATGAATTT
ACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
TATCAATCCACGACTTGCGCATCCCGTCTCTCTGGCCGACGTAATGCCAGCCCACCCGCCCGCCA
GCTCGTTTCGTCAATTGGCTTAGGCATACGAAGTTCATTCCAAGTTTGGGGC
Found at i:17915714 original size:26 final size:26
Alignment explanation
Indices: 17915678--17915759 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
17915668 TGGGTTGACT
17915678 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
17915704 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
* *
17915730 TAAGCATACAGAGCTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
17915756 TAAG
1 TAAG
17915760 ATCGGACCAG
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:17917502 original size:26 final size:26
Alignment explanation
Indices: 17917466--17917519 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
17917456 GGTTGACTTT
17917466 AGCATATGGAGTTCATTCCCAGTCTA
1 AGCATATGGAGTTCATTCCCAGTCTA
17917492 AGCATATGGAGTTCATTCCCAGTCTA
1 AGCATATGGAGTTCATTCCCAGTCTA
17917518 AG
1 AG
17917520 ATCGGACCGG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (26 bp):
AGCATATGGAGTTCATTCCCAGTCTA
Found at i:17918677 original size:26 final size:26
Alignment explanation
Indices: 17918641--17918693 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17918631 GTTGGCTTAG
*
17918641 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
17918667 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
17918693 G
1 G
17918694 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:17920357 original size:871 final size:868
Alignment explanation
Indices: 17918667--17923088 Score: 5299
Period size: 871 Copynumber: 5.0 Consensus size: 868
17918657 CCCAGTCTAA
* * * * * *
17918667 GCATATGGAGTTCATTCCCAATCTAAGATCAGACCAGTCTGAGGGTTGC-GGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTTCAGGC-GCACATGCTAG
* * * * *
17918731 GCTCAGGCATGTGCTAGTGTCGCATTTTTCTTCGTC--GGCACCATCGCCGGAGCATCG-CCAGA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGA-A
* ** * * * **
17918793 GAACCTAATTGGCGACATTGGGTTTCC-AGTGATCGGGGGGGCTAGGGGGTGTGCGCACATGATG
129 GAACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATG
* * * * * *
17918857 TGCAATGTGTGCTGATACTTGGCCCTTATATTGGCCCCCTTATACCTCATCAAACATCGAGAACA
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC-TATCCCTCATCAAACCTCGAGAACT
** * * *
17918922 CACATGCCTTTAAAGGGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGA
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
17918987 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * * **
17919052 TTATGCATGCCAACAAAAATACAAGTATCACGTCTACCAAGTTTAGGGTCAAAACGCCTTCTGAA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAA
* * * *
17919117 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTGGAAAATCATGAAAAATAGAAAACGAGTAGT
452 AAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGT
* *
17919182 CTTGCCATGAAACTTCACGTGAAGCCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** * * *
17919247 GCATTGGCAAATAGAAATATGAAGATTTGTCTAAACCCACCTACCACCCTATCAATCCACGGCTT
582 GCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * * *
17919312 GTGCATCCCGTCTCTCTGGCTGGCGTACTACCAGCCTGCCTGCC-CTCTTGTTTCATCGGTTGGC
647 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC--CCGCTC--GTTTCGTCGGTTGGC
* * * ** * *
17919376 ATAGGCATACAAAGTTCATTCCCAGTCTAACATGGGACTGGACTGACGGTTCTGGCAGCAAGATC
708 TTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTC-GGCAGCAAGATC
** * * * * * *
17919441 GATAGCACGTAGAGGGGGACCCGGCCGGTCCCCGGATTACGCATCCCGCCTCTCTGGCCGGCTGA
772 GGCAGCACGCAGAGGGGGACCCGGCCGAT-CCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
17919506 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
836 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
17919539 GAATACGGAGTTCATTCCCATTCTAAGATCAGACCGGACCGAGGGTTTCAGTCGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTTCAGGCGCACATGCTAGG
* * * * *
17919604 CTCGGGTATGTGCTCGTGCCACATGTTTCTTCGTCGGGGCACCATCGTAGGAGCA-CGTCGAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGAAGA
* *
17919668 ACCTGACCGGTGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACGTGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
**
17919732 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTTGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
17919797 CCCCCTTAAAGAGCATTTGAGATTCTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
17919862 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCCGAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * *
17919927 GCATTCCAACAAAAATAAAAGGATCACGTCTACCATGCTTGCGGCCAAAACTCCTTCCAAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
* * * *
17919992 TTTTAAAAAATCCTGAACCATAAAAAATTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTG
456 TTTTAAAAAATCCTGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
17920057 CCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
521 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
17920122 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACTTACCACCCTATCGATCCACAGCTTGGGC
586 TGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * *
17920187 ATCCCGTCTCTCTTGCCGGCGCAGTGCCCGCCCGTCCATCCGCTCGTTTCGTCGGATGGCTTAGG
651 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CC--CCGCTCGTTTCGTCGGTTGGCTTAGG
* * * *
17920252 CATACAGAGTTCATTCCCAGTCTAAGATCAGACCCGACTGAGGGTTACGGTAGCAGGATTGGCAG
713 CATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTT-CGGCAGCAAGATCGGCAG
* *** *
17920317 CACGCAGTGGGGGACCCAATCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCC
777 CACGCAGAGGGGGACCCGGCCGAT-CCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
*
17920382 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGG
841 CGCACGCTCGTTTCGTGGGTTGAC-T-----TA--G
*
17920418 AGTTCATTCCCAGTCTAACCATGCAGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTT
1 -G--------CA---T-A-C--G--GAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTT
* * ** *
17920483 AC-GGTAGCACATGCTAGGCTCGGGCATGTGCTGGTGATGCATTTTTCTTTGTCGGGGCACCATC
48 TCAGG-CGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
* ** * * *
17920547 GTCGGAGCATCGT-GGAGAACCTGACAAGCGGCATTAGGGTTCC-AGCGATCGAGGGTGCCGGGG
112 GTCGGAGCATCGTCGAAGAACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGGCC-GGG
* * *
17920610 GGGTGTGCGTACATGATGTGTGATGGGTGCTGGTACTTCGCCCTTATATTGGCCCCCTATCCCTC
175 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * * *
17920675 ACCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGATATTTTATAGGTTTACTG-CAGTA
240 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* * * *
17920739 GCAATTAAAGTATCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTCAAG
305 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * *
17920804 TTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAGGGATCACGTCTACCAAGTTAGGGG
370 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * *
17920869 CCAAAAATCCTTCCAAAAAAATTTTAAAAAAT-CTCGAACCGTAAAAAGTTTTGAATATCATGAA
435 CCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCT-GAACCGTAAAAAGTTTCGAAAATCATGAA
* * *
17920933 AAATAGAAAACGAGTCGTATTGTCATGAAACGTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
499 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* *
17920998 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCTACCTACCAC
564 TTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * *
17921063 CCTATCGATCCATGGCTTGCGCATCCTGTCTCTCTGGCCGACGTAGT----GCCCG-CCCGCTCG
629 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCCGCTCG
* * *
17921123 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACAGGACTGAGGGTT
694 TTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTT
* * ** * **
17921188 GCGGCAGCAAGATCGGCCGCACGCAGAAGGGGACTTGGTCGATTCCTGGCTTGCGCATCTTGCCC
759 -CGGCAGCAAGATCGGCAGCACGCAGAGGGGGACCCGGCCGA-TCCTGGCTTGCGCATCCCGCCC
* * * **
17921253 CTCTGGTCGGTTGAGCGCCCGCACGCTCGTTTTGTTAG-TGACTTAG
822 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * ** * *
17921299 GCATACAGAGTTCATTCCCAGTCTAAGATCGGAATGGACCAAGGGTTGT--GGCAGCCCATGCT-
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTT-TCAGGC-GCACATGCTA
* *
17921361 GAGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGTCACCATCGTCGGAGCATCGTCGA
64 G-GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGA
* * * *
17921426 AGAACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGGCCGACGGGGTGTGCGCATATAAT
128 AGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGTGTGCGCACATGAT
* * * *
17921491 GTGCAATGAGTGCTGGTACTTGGCCTTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACT
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
17921556 CACACCCCCTTAAAAAGCATTTGAGATTTTACTGGCTTGCTGCCAGTAGCCATTAAAGTGTCTGA
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
17921621 AATGGGGACATTTTTTTAAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTT
* * *
17921686 TTTGTGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGA
386 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAA
* *
17921751 AAAAATTTTAAAAAAT-CTCGATCCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTC
451 AAAAATTTTAAAAAATCCT-GAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTC
* *
17921815 GTCTTGCCATTAAACTTAACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
515 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*
17921880 TGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGC
580 TGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* *
17921945 TTGCGCATCCCGTCTCTCTTGCCGGCGCAGTGCCCGCCCG-CCCGCTCGTTTCGTCGGTTGGCTT
645 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCCGCTCGTTTCGTCGGTTGGCTT
** ** * *
17922009 AGGCATAC-GAAGTTCATTCCCAGTCTAAGATTGGACCCAACCGAGGGTTGCAGCAGC-AGTATC
710 AGGCATACAG-AGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTT-CGGCAGCAAG-ATC
* * * **
17922072 GGTAGCACGCAGTGGGGGACCCGGCCGATCCTCGCCTTGCGCATCCCGCCCCTCTGGCCAACTGA
772 GGCAGCACGCAGAGGGGGACCCGGCCGATCCT-GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* *
17922137 GTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAG
836 GCGCCCGCACGCTCGTTTCGTGGGTTGAC-T-----T----AG
* *
17922180 TTCATTCCCAGTCTAACCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGT
1 ----------G------CATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTT-T
* * * **
17922245 --GGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTCTGTTCACCGGGGCACCATCG
49 CAGGC-GCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG
* * * *
17922308 CCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCAGGGGGGCCGGGGGT
113 TCGGAGCATCGTCGAAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGG-
*
17922373 GTGCGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
177 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* * *
17922438 CAAACCTCAAGAACTCACGCCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGC
242 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
** * *
17922503 CATTAAAGTGTCCAAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTT
307 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* ** * * * * *
17922568 TTTGGCTGAATTTTTTTGTGCATGCCAGTAAAAATGCAAGGATCATGTATAGCAAGTTTGGGGCA
372 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * * * *
17922633 AAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACTGCAAAAACTTTCTAAAATCATGAAAAA
437 AAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCGAAAATCATGAAAAA
* *
17922698 TAGAAAATGAGTCGTCTTGCCATGAAACTACACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
502 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* *
17922763 CAAGCCATAAAAATAGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCT
567 CAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* *
17922828 ATCGATCCACGGCTTGCGCATCCTG-CATCTCTGGCCGGCGTAGTGCCCGCCTGCCCTCCCGCCC
632 ATCGATCCACGGCTTGCGCATCCCGTC-TCTCTGGCCGGCGTAGTG--C-CC-G-CC-CGC-CCC
* * * * * *
17922892 GCTCATTTCGTCCGGTT-GCTTAGGGATACGGAGTTCATTCCAAGTCTAAGATCAGACTGGACCG
689 GCTCGTTTCGT-CGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTG
* * *
17922956 AGTGTT-----GC---A---GCAGCACGCAGAGGGGGACCCGACCGATCCTCGTCTTGCGCATCC
753 AGGGTTCGGCAGCAAGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCT-GGCTTGCGCATCC
* * * ** * *
17923010 CACCCCTCTGGCCGCCTAAGCATCTGCACGCTCATTTCGTGGGTTGACTTAG
817 CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
17923062 GCATACGGAGTTCATTCTCAGTCTAAG
1 GCATACGGAGTTCATTCCCAATCTAAG
17923089 CATGTGGAGT
Statistics
Matches: 3072, Mismatches: 381, Indels: 200
0.84 0.10 0.05
Matches are distributed among these distances:
862 1 0.00
863 102 0.03
864 146 0.05
865 77 0.03
866 298 0.10
867 1 0.00
868 1 0.00
869 8 0.00
870 146 0.05
871 550 0.18
872 154 0.05
873 33 0.01
874 19 0.01
877 3 0.00
879 1 0.00
880 2 0.00
881 3 0.00
882 2 0.00
883 2 0.00
886 1 0.00
888 2 0.00
889 4 0.00
890 148 0.05
891 4 0.00
892 81 0.03
893 1 0.00
894 5 0.00
895 3 0.00
896 269 0.09
897 468 0.15
898 353 0.11
899 118 0.04
900 1 0.00
901 2 0.00
902 1 0.00
904 56 0.02
905 6 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (868 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTTCAGGCGCACATGCTAGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGAAGA
ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
TTTTAAAAAATCCTGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
ACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTCGGCAGCAAGATCGGCAGCACG
CAGAGGGGGACCCGGCCGATCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
GCTCGTTTCGTGGGTTGACTTAG
Found at i:17920851 original size:898 final size:896
Alignment explanation
Indices: 17919544--17923243 Score: 4883
Period size: 897 Copynumber: 4.2 Consensus size: 896
17919534 CTTAGGAATA
* * * *
17919544 CGGAGTTCATTCCCATTCTAAGATCAGACCGGACCGAGGGTTTCAGTC-GCACATGCTAGGCTCG
1 CGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTAC-GGCAGCACATGCTAGGCTCG
* * * *
17919608 GGTATGTGCTCGTGCCACATGTTTCTTCGTCGGGGCACCATCGTAGGAGCA-CGTCGAAGAACCT
65 GGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGAAGAACCT
* *
17919672 GACCGGTGGCATTGGGGTTCCGACGATCG-GGGGGCC-GGGGGGTGTGCGCACGTGATGTGCGAT
130 GACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
**
17919735 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTTGAACTCACACCC
195 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
17919800 CCTTAAAGAGCATTTGAGATTCTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
260 CCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* *
17919865 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCCGAATTTTTTTGTGCA
325 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCA
* * * * * *
17919930 TTCCAACAAAAATAAAAGGATCACGTCTACCATGCTTGCGGCCAAAACTCCTTCCAAAAAAATTT
390 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTT
* * * *
17919995 TAAAAAATC-CTGAACCATAAAAAATTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCC
455 TAAAAAATCTC-GAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
*
17920059 ATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
519 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * *
17920124 GCATGCAGAAATATGAAGATGTGCCTAAACCCACTTACCACCCTATCGATCCACAGCTTGGGCAT
584 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* *
17920189 CCCGTCTCTCTTGCCGGCGCAGTGCCCGCCCGTCCATCCGCTCGTTTCGTCGGATGGCTTAGGCA
649 CCCGTCTCTCTGGCCGGCGCAGTGCCCGCCCG--C--CCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * *
17920254 TACAGAGTTCATTCCCAGTCTAAGATCAGACCCGACTGAGGGTTACGGTAGCAGGATTGGCAGCA
710 TACGGAGTTCATTCCCAGTCTAAGATCAGACCCGACCGAGGGTTGCGGCAGCAGGATCGGCAGCA
* * *
17920319 CGCAGTGGGGGACCCAATCGATCC-CTGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCCC
775 CGCAGAGGGGGACCCGACCGATCCTC-GGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCCC
17920383 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAACCATG
839 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAACCATG
* *
17920441 CAGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTACGGTAGCACATGCTAGGCTCGG
1 CGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTAGGCTCGG
*** * *
17920506 GCATGTGCTGGTGATGCATTTTTCTTTGTCGGGGCACCATCGTCGGAGCATCGT-GGAGAACCTG
66 GCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGAAGAACCTG
** * * * *
17920570 ACAAGCGGCATTAGGGTTCC-AGCGATCGAGGGTGCCGGGGGGGTGTGCGTACATGATGTGTGAT
131 ACCGGCGGCATTGGGGTTCCGA-CGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
* *
17920634 GGGTGCTGGTACTTCGCCCTTATATTGGCCCCCTATCCCTCACCAAACCTCGAGAACTCACACCC
195 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * * *
17920699 CCTTAAAGAGCATTTGATATTTTATAGGTTTACTG-CAGTAGCAATTAAAGTATCTGAAATGGGG
260 CCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* *
17920763 ACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTCAAGTTTTTAGCTGAATTGTTTTGTGCA
325 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCA
* *
17920828 TGCCAACAAAAATACAGGGATCACGTCTACCAAGTTAGGGGCCAAAAATCCTTCCAAAAAAATTT
390 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTT
* * * *
17920893 TAAAAAATCTCGAACCGTAAAAAGTTTTGAATATCATGAAAAATAGAAAACGAGTCGTATTGTCA
455 TAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
*
17920958 TGAAACGTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
520 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* *
17921023 CATGCAGAAATATGAAGATGTGCCTAAACCTACCTACCACCCTATCGATCCATGGCTTGCGCATC
585 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * *
17921088 CTGTCTCTCTGGCCGACGTAGT----GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
650 CCGTCTCTCTGGCCGGCGCAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* ** * * *
17921149 AGTTCATTCCCAGTCTAAGATTAGACAGGACTGAGGGTTGCGGCAGCAAGATCGGCCGCACGCAG
715 AGTTCATTCCCAGTCTAAGATCAGACCCGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAG
* ** ** ** * * *
17921214 AAGGGGACTTGGTCGATTCCT-GGCTTGCGCATCTTGCCCCTCTGGTCGGTTGAGCGCCCGCACG
780 AGGGGGACCCGACCGA-TCCTCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCCCGCACG
** ** * *
17921278 CTCGTTTTGTTAG-TGACTTAGGCATACAGAGTTCATTCCCAGTCTAA-GAT-
844 CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAACCATG
** *
17921328 C-G-G---------AA--T--G----GACC--A---AGGGTTGTGGCAGCCCATGCT-GAGCTCG
1 CGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTAG-GCTCG
** *
17921368 GGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGTCACCATCGTCGGAGCATCGTCGAAGAACCT
65 GGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGAAGAACCT
* * ** * * *
17921433 GACCGGTGGCATTGGGGTTCCGACGATCGGGGGGGCCGACGGGGTGTGCGCATATAATGTGCAAT
130 GACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
* * *
17921498 GAGTGCTGGTACTTGGCCTTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
195 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
17921563 CCTTAAAAAGCATTTGAGATTTTACT-GGCTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
260 CCTTAAAGAGCATTTGAGATTTTA-TAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * *
17921627 GACATTTTTTTAAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTGTG
324 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAA-TTTTTTTGTG
* * * *
17921692 CATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAAT
388 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAAT
* *
17921757 TTTAAAAAATCTCGATCCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
453 TTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* *
17921822 CATTAAACTTAACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
518 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
17921887 GGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCA
583 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
*
17921952 TCCCGTCTCTCTTGCCGGCGCAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
648 TCCCGTCTCTCTGGCCGGCGCAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* ** * * * *
17922017 GAAGTTCATTCCCAGTCTAAGATTGGACCCAACCGAGGGTTGCAGCAGCAGTATCGGTAGCACGC
713 GGAGTTCATTCCCAGTCTAAGATCAGACCCGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGC
* * * * *
17922082 AGTGGGGGACCCGGCCGATCCTCGCCTTGCGCATCCCGCCCCTCTGGCCAACTGAGTGCCCGCAC
778 AGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCCCGCAC
* *
17922147 GCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAACCATA
843 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAACCATG
* **
17922201 CGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTAGGCTCGG
1 CGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTAGGCTCGG
* * ** * *
17922266 GCATGTGCTGGTGCCACATTTCTGTTCACCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTG
66 GCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGAAGAACCTG
* * *
17922331 ACCGACGGCATTGGGGTTCCGACGATC-AGGGGGGCCGGGGGTGTGCGCGCACATGATGTGCGAT
131 ACCGGCGGCATTGGGGTTCCGACGATCGA-GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
* *
17922395 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACGCCC
195 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
**
17922460 CCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCAAAATGGGG
260 CCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* *
17922525 ACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTGGCTGAATTTTTTTGTGCA
325 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCA
** * * * * *
17922590 TGCCAGTAAAAATGCAAGGATCATGTATAGCAAGTTTGGGGCAAAAAATCCTTCCAAAAAAATTT
390 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTT
* * * * * *
17922655 TAAAAAATCCCGAACTGCAAAAACTTTCTAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCA
455 TAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* *
17922720 TGAAACTACACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAGCATTGG
520 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* *
17922785 CATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCACGGCTTGCGCATC
585 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * *
17922850 CTG-CATCTCTGGCCGGCGTAGTGCCCGCCTGCCCTCCCGCCCGCTCATTTCGTCCGGTT-GCTT
650 CCGTC-TCTCTGGCCGGCGCAGTG--C-CC-G----CCCGCCCGCTCGTTTCGT-CGGTTGGCTT
* * ** *
17922913 AGGGATACGGAGTTCATTCCAAGTCTAAGATCAGACTGGACCGAGTGTT------GC---A---G
705 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCCGACCGAGGGTTGCGGCAGCAGGATCGG
* * *
17922966 CAGCACGCAGAGGGGGACCCGACCGATCCTCGTCTTGCGCATCCCACCCCTCTGGCC-GCCTAAG
770 CAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCAG-CTGAG
** * * * * *
17923030 CATCTGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCTCAGTCTAAGCATG
834 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAACCATG
* * * * * *
17923093 TGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGACAGCACATGCTGGGCTCGG
1 CGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTAGGCTCGG
* ** * * *
17923158 GCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCACCGAAACATCGTCTG-AGAACTT
66 GCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTC-GAAGAACCT
* *
17923222 AATCGGCGGCATTGGGGTTCCG
130 GACCGGCGGCATTGGGGTTCCG
17923244 GTGATCGTGA
Statistics
Matches: 2459, Mismatches: 283, Indels: 127
0.86 0.10 0.04
Matches are distributed among these distances:
862 1 0.00
863 74 0.03
864 147 0.06
865 78 0.03
866 275 0.11
868 4 0.00
869 4 0.00
870 148 0.06
871 32 0.01
872 3 0.00
873 1 0.00
874 2 0.00
875 1 0.00
876 2 0.00
884 2 0.00
885 1 0.00
886 2 0.00
887 1 0.00
888 3 0.00
889 33 0.01
890 145 0.06
891 3 0.00
892 245 0.10
893 1 0.00
894 6 0.00
895 2 0.00
896 269 0.11
897 434 0.18
898 354 0.14
899 119 0.05
900 1 0.00
904 61 0.02
905 5 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (896 bp):
CGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTAGGCTCGG
GCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGAAGAACCTG
ACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATG
GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
CTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCAT
GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTT
AAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
CGTCTCTCTGGCCGGCGCAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
GTTCATTCCCAGTCTAAGATCAGACCCGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGA
GGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCCCGCACGCT
CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAACCATG
Found at i:17922201 original size:26 final size:26
Alignment explanation
Indices: 17922171--17922221 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17922161 TTGACTTAGG
*
17922171 CATACGAAGTTCATTCCCAGTCTAAC
1 CATACGAAGTTCATTCCCAATCTAAC
*
17922197 CATACGGAGTTCATTCCCAATCTAA
1 CATACGAAGTTCATTCCCAATCTAA
17922222 GATCGGACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.29, G:0.12, T:0.27
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAATCTAAC
Found at i:17925504 original size:26 final size:26
Alignment explanation
Indices: 17925464--17925516 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17925454 GTTAACTTAG
*
17925464 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGATCATTCCCAGTCTAA
17925490 GCATACGGAGATCATTCCCAGTCTAA
1 GCATACGGAGATCATTCCCAGTCTAA
17925516 G
1 G
17925517 ATTATACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGATCATTCCCAGTCTAA
Found at i:17926351 original size:876 final size:872
Alignment explanation
Indices: 17924680--17926480 Score: 2547
Period size: 876 Copynumber: 2.1 Consensus size: 872
17924670 GTTTCGACGA
* * *
17924680 TCGGACATATGCTGGTGCCACATTTTTCTTTGTCGGGGCACCATCACCGGAGAACCTGACCGACG
1 TCGGGCATATGCTGGTGCCACATTTTTCTTTGTCGGGGCACCATCACCGAAGAACATGACCGACG
* * *
17924745 GCATTGGGGTTCTGACGATCGGGGGGGCTAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
66 ACATTGGGGTTCCGACGATAGGGGGGGCTAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* * ** *
17924810 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTTGCACCCCTTTAAAGA
131 TACTTAGCCCTTATAGTGGCCCCCTATCCCTCATCAAACCTCAAGAACTTGCACCCCCTTAAAGA
* * *
17924875 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
196 CCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTAAAATGGGGACACTTTTT
17924940 TCAAATCGTCAAAAAATCTTGTACACTTCCAGTTTTTAGCAGAAATTTTTGTGCATGCCAACAAA
261 TCAAATCGTCAAAAAATCTTGTACACTTCCAGTTTTTAGCAGAAATTTTTGTGCATGCCAACAAA
* *
17925005 AACACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCT
326 AACACAAGGATCACGTCCACCAAGTTTGGGGCCAAAACTCCTTTCCAAAAAATTTTAAAAAATCT
* *
17925070 CGAACCACAAAAGTTTCTAAAATCATGAAAAAAATAAAACGAGTCATCTTGCCATGAAACTTCAC
391 CGAACCACAAAAGTTTCTAAAATCATGAAAAAAAGAAAACGAGTCATCTTGCCATGAAACTACAC
* * *
17925135 GTGAAGGCTTAAGGGTCCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAAT
456 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAAAAAT
* * * * *
17925200 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCGTCCTATCTCTCTG
521 AGGAAGATGTGCCTAAACCCACCTACAACCCTATCGATCCACGGCTTGCGCATCCTATATCTCTA
* **
17925265 GCCGACGTAGTGCCCGCCCGCCCGTCTGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGTTGT
586 GCCGACGTAGT---CGCCCGCCCGTCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGAAGT
* * *
17925330 TCATTCCCAGTTTGAGATCTAACTAGACAAGGGTTGCGAAAGCACGCAGAGGGGGACCCGACCGA
648 TCATTCCCAGTCTAAGATCCAACTAGACAAGGGTTGCGAAAGCACGCAGAGGGGGACCCGACCGA
* **
17925395 TCCCCAGCTTGCGCATCCCGCCCTTCTGGCCGGCTGGGTGCCCACACGCTGGTTTATGGGTTAAC
713 TCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGCATGCCCACACGCT-GTTTATGGGTTAAC
* *
17925460 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGATCATTCCCAGTCTAAGATTATACC
777 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGATCATTCCCAGTCTAAGATCAGACC
17925525 AGACCAAGGGTTG-CGGCAGCACATACTGGGC
842 AGACCAAGGG-TGACGGCAGCACATACTGGGC
* * * * *
17925556 TCGGGCATATGTTGGTGCCGCATTTTTCTTTGCCGGGGCACCATCGCTGAAGAACATGACCGACG
1 TCGGGCATATGCTGGTGCCACATTTTTCTTTGTCGGGGCACCATCACCGAAGAACATGACCGACG
* * * * *
17925621 ACGTTGGGGTTCCGATGATAGGAGGGG-TCGGGGGGTGTGCGCGCATGATGTGCGATGGGTGCTG
66 ACATTGGGGTTCCGACGATAGGGGGGGCT-AGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
*
17925685 GTACTTAGCCCTTGTAGTGGCCCCCTATCCCTCATCAAACCTCAAGAAC-TGACACCCCCTTAAA
130 GTACTTAGCCCTTATAGTGGCCCCCTATCCCTCATCAAACCTCAAGAACTTG-CACCCCCTTAAA
17925749 GACCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTAAAATGGGGACACTTT
194 GACCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTAAAATGGGGACACTTT
* * ** * * * **
17925814 TTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTGGCTGAATTTTTTTGTGCATGCCAGT
259 TTTCAAATCGTCAAAAAATCTTGTACACTTCCAGTTTTTAGCAGAA-ATTTTTGTGCATGCCAAC
** **
17925879 AAAAATGCAAGGATCACGTCCAGTAAGTTTGGGGCCAAAACTCC-TTCCAAGAAAATTTTAAAAA
323 AAAAACACAAGGATCACGTCCACCAAGTTTGGGGCCAAAACTCCTTTCCAA-AAAATTTTAAAAA
* * * *
17925943 ATCTTGAACCACAAAAAGTTTCTAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAAC
387 ATCTCGAACCAC-AAAAGTTTCTAAAATCATGAAAAAAAGAAAACGAGTCATCTTGCCATGAAAC
17926008 TACACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTA
451 TACACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTA
*
17926073 AAAATAGGAAGATGTGCCTAAACCCACCTACAACCCTATCGATCCACGGCTTGCGCATCCTGTAT
516 AAAATAGGAAGATGTGCCTAAACCCACCTACAACCCTATCGATCCACGGCTTGCGCATCCTATAT
* * *
17926138 CTCTAGCCTACGTAGT-GCCCGCCCGTCCGCCCGCTCGTTTCCTTGGTTGGCTTAGGCATACGAA
581 CTCTAGCCGACGTAGTCGCCCGCCCGTCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGAA
* * * ** **
17926202 GTTCATTCCTAGTCTAAGATCCGACTGGATCGGGGGTTGCGGCAGCACGCAGAGGGGGACCCGAC
646 GTTCATTCCCAGTCTAAGATCCAACTAGA-CAAGGGTTGCGAAAGCACGCAGAGGGGGACCCGAC
* * * *
17926267 CGATCCTC-GTCTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCAT-CTGCACACTCAT-TTTGTG
710 CGATCCCCAG-CTTGCGCATCCCGCCCCTCTGGCCGGCT--GCATGC-CCACACGC-TGTTTATG
* * * *
17926329 GGTTGACTTAGGCATACGGAGTTCATTCCCATTCTAAGCATATGGAGCTCATTCCCAGTCTAAGA
770 GGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGATCATTCCCAGTCTAAGA
* * * ** *
17926394 TCGGATCGGACTGAGGGTGACGGCAGCACATGCTGGGC
835 TCAGACCAGACCAAGGGTGACGGCAGCACATACTGGGC
* * * **
17926432 TCGAGCATGTGCTGGTGTCACATTTTTCTTCATCGGGGCACCATCACCG
1 TCGGGCATATGCTGGTGCCACATTTTTCTTTGTCGGGGCACCATCACCG
17926481 GAGCATCATC
Statistics
Matches: 813, Mismatches: 100, Indels: 24
0.87 0.11 0.03
Matches are distributed among these distances:
874 67 0.08
875 70 0.09
876 406 0.50
877 86 0.11
878 184 0.23
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (872 bp):
TCGGGCATATGCTGGTGCCACATTTTTCTTTGTCGGGGCACCATCACCGAAGAACATGACCGACG
ACATTGGGGTTCCGACGATAGGGGGGGCTAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
TACTTAGCCCTTATAGTGGCCCCCTATCCCTCATCAAACCTCAAGAACTTGCACCCCCTTAAAGA
CCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTAAAATGGGGACACTTTTT
TCAAATCGTCAAAAAATCTTGTACACTTCCAGTTTTTAGCAGAAATTTTTGTGCATGCCAACAAA
AACACAAGGATCACGTCCACCAAGTTTGGGGCCAAAACTCCTTTCCAAAAAATTTTAAAAAATCT
CGAACCACAAAAGTTTCTAAAATCATGAAAAAAAGAAAACGAGTCATCTTGCCATGAAACTACAC
GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAAAAAT
AGGAAGATGTGCCTAAACCCACCTACAACCCTATCGATCCACGGCTTGCGCATCCTATATCTCTA
GCCGACGTAGTCGCCCGCCCGTCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCA
TTCCCAGTCTAAGATCCAACTAGACAAGGGTTGCGAAAGCACGCAGAGGGGGACCCGACCGATCC
CCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGCATGCCCACACGCTGTTTATGGGTTAACTTAG
GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGATCATTCCCAGTCTAAGATCAGACCAGAC
CAAGGGTGACGGCAGCACATACTGGGC
Found at i:17926380 original size:26 final size:26
Alignment explanation
Indices: 17926340--17926392 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17926330 GTTGACTTAG
* *
17926340 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
*
17926366 GCATATGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
17926392 G
1 G
17926393 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:17927862 original size:26 final size:26
Alignment explanation
Indices: 17927791--17927863 Score: 137
Period size: 26 Copynumber: 2.8 Consensus size: 26
17927781 TTGACTTAGG
*
17927791 CATACGGAGTTCATTCCCACTATAAC
1 CATACGGAGTTCATTCCCAGTATAAC
17927817 CATACGGAGTTCATTCCCAGTATAAC
1 CATACGGAGTTCATTCCCAGTATAAC
17927843 CATACGGAGTTCATTCCCAGT
1 CATACGGAGTTCATTCCCAGT
17927864 CTAAGATCGG
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTATAAC
Found at i:17930196 original size:872 final size:874
Alignment explanation
Indices: 17926529--17933465 Score: 7118
Period size: 873 Copynumber: 7.7 Consensus size: 874
17926519 CCGGTGATCG
*
17926529 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGCACCATTGTAT
1 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * * * *
17926594 GAAATTACAAGCCATAGAAATGGCATTGGCACGCAGGAATATGAAGATGTGCCTAAAGCCACCTA
66 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* ** * * *
17926659 CCACCCTATCAATCCACGGCTTATGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGTCCAC
131 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGC
* * * * * * * *
17926724 CCGCTCGCTCGTTTCATCGGTTAGCTTAGGCATGCGGTGTTCATTTCCAGTCTAACATCGGACCG
196 CCGCTC-CT-G-TT-GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* * * * * * * * * *
17926789 GACTGAGGGTTGCGGCAGTAGGATCGACAGCACGTAGA-GGAGTCTCGGACGATCCCCGGCTTGT
257 GACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCAGCTTGC
* * * * * * * *
17926853 GCATCCTGCCCTTCTGGTCAGCTGAGTGCCCGCACGCTCGTTTCGTAGGTTGACTTAGGCATACA
322 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACG
* ** * **
17926918 AAGTTCATTCCCAGTCTAAG-ATC--AGA-TTGAACTGAGGGTTGCGACAGCACATGCTGGGCTC
387 GAGTTCATTCCCAGTCTAAGCATCAGAGACCAGGACCAAGGGTTGCGACAGCACATGCTGGGCTC
** *
17926979 GGGCATGTGCTGGTGGTGCATTTTTCTTCATCGGGGCACCATCACTGGAGCATCATCGGAGAACC
452 GGGCATGTGCTGGTGCCGCATTTTTCTTC-TCGGGGCACCATCGC-GGAGCATCATCGGAGAACC
* ** * * * * *
17927044 TGACCT-GCGGCATTGGGGTTTCGGTGATCGGGGGGCCGCGAGGTGTGCGTACATGATCTGGGAT
515 TGA-CTGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
*
17927108 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCC
579 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
*
17927173 CCTTAAAGAGCATTTGATATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
644 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* *
17927238 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGGC-GAATGTTTTTGTGC
709 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA-GCTGAATTTTTTTGTGC
* ** *
17927302 ATGCCAAAAAAAATATAAGGATCACGTCTAGGAAGTTTGGGGCTAAAACTCCTAT-CGAAAAAAT
773 ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT-TCCGAAAAAAT
* * * *
17927366 TTTAAAAAATCCCAAACCGTAAAAAGTTTCCAAAATCG
837 TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCA
* *
17927404 TGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTAT
1 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* *
17927469 GAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTA
66 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
17927534 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGC
131 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGC
* * * ** *
17927599 CCACCTGCCCGCTCATTTCATCATTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGA
196 CC-GCT-CCTG-T--TGTC--GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * * * *
17927664 CCGGATCGAGGGTTACAGCAGCAGGATCGGCAGCACACAGAGGGGGACCCAGTCGATCCCC-GAC
254 CCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCAG-C
* ** * * *
17927728 TTGCGCATCCCGTCCCTCTGAACGGTTGAGCGCCGGTACGCTCGTTTCATGGGTTGACTTAGGCA
318 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCA
* * * * *
17927793 TACGGAGTTCATTCCCACTATAACCATACGGAGTTCATTCCCAGTATAACCATACGGAGTT-C-A
383 TACGGAGTTCATTCCCAGTCTAAGCAT-CAGAG---A---CCAG---GACCA-A-GG-GTTGCGA
* * * * ** * *
17927856 TTCCCAGTCTAAGATCGGACTGGAC-CGAGGGTTGCGACAGCACATGCTAG-GCTCGGGTATGTG
435 ----CAG-C--ACAT--G-CTGGGCTC---GG--GC-A-TG----TGCTGGTGC-CGCAT-TTTT
** ** * * * * * *
17927919 CTGGT-GCCGCATTTTTCTTCACCGGAGCAACATCGGAGAACATGACCGGCGGCATTGGGGTTCC
477 CTTCTCGGGGCA----CCATC-GCGGAGCATCATCGGAGAACCTGACTGGCGGCATTGGGGTTCC
*
17927983 GACGATCGGGGGGCCGGGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
537 GACGATCGGGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* *
17928048 ATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAAAGCATTTGAGATT
600 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* * *
17928113 TTACAGGTTTGCTGCTAGTAGCAATTAAAGTGTCTAAAATGGGGACAC-TTTTTCTAAATGGTCA
665 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC-AAATGGTCA
* * **
17928177 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCAAGTGAAAAAAAATACAAGGA
729 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGA
* * * * *
17928242 TCACGTCTACGAAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTAAAAAAAATCTCGAACCGT
794 TCACGTCTAC-CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT-TAAAAAATCCCGAACCGC
*
17928307 AAAAAGTTTTAAAAATCA
857 AAAAAGTTTCAAAAATCA
* * *
17928325 TGAAAAATAGAAAACGAGTCGTCTCGCCATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTAA
1 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
** * * *
17928390 GAATTTACAAGAAATAAAAATGGCATTGGCA--CATAGAA-ATGAAGATGAGCCTAAACCCACCA
66 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA-AATATGAAGATGTGCCTAAACCCACCT
* *
17928452 ACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG
130 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG
* * * * * *
17928517 TCCGCTCGT-TTCGTCGGTTGGCTTAGGCATAAGGAGTTCATTCCCATTCTAAGATCGGACCGGA
195 CCCGCTCCTGTT-GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
* * * * * * *
17928581 CCGAGGGTTGCGGCAGCAAGATTGGCAGCACGCAGAGGGGGACCTGACCTATTCCTAGCTTGCGC
259 CCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCAGCTTGCGC
**
17928646 ATCCCGCCCCTCTGGCCAACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGA
324 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGA
* * * * *
17928711 GTTCATTCTCAGTCTAAGAATTCAGAGTTCATTCCCTGTCTAAGATCAGATCGGACCGAGGTTAC
389 GTTCATTCCCAGTCTAAGCA-TCAGAG---A----C---C--AG----GA-C-CA-AG-GGTTGC
** * * *
17928776 GGTAGCACATGCTGGGCTCAGGCATGTGCTGGTGGCACATTTTTCTT-T----G---C--CG-GG
433 GACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCTCGGGGCACCATCGCGG
* * * * ** * *
17928830 -GTACCATC---G--CC-GA-----AGCATTAGGGTTTTGGCGATCGGGGGGGCTGGGGGGTGTG
498 AGCATCATCGGAGAACCTGACTGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTG
* * *
17928883 CACACATGATGTGCGACGGGTGCTGGTACTTTGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
562 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
17928948 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
627 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* *
17929013 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAA
692 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * ** **
17929078 TTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAAATCTAGAAAGTTTGGGGCCAAAAC
757 CTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
** * **
17929143 TCCTTCCGAAAAAATTTTAAAAAATCTTGAACTGCAAAAAGTTTCAAAAATTG
822 TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCA
*
17929196 TGAAAAATAGAAAAGGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
1 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* *
17929261 GAATTTACATGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTTAACCCACCTA
66 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* ** *
17929326 CCACCCTATCGATCCGCGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCATCCAC
131 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGC
* * ** *
17929391 CCGCTCCTGTTGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGACTAAGATTGGACCGGACC
196 CCGCTCCTGTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACC
* * * * * *
17929456 GAGGGTTGTGGCAGCAGGATCGACAGCATGCAGAGCGGGACCCGGTCGATCCCCAGCTTGCTCAT
261 GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCAGCTTGCGCAT
* * * *
17929521 CCTGCCCCTCTGGCCGGCTGATCGCCCGCACGATCATTTCATGGGTTGACTTAGGCATACGGAGT
326 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGT
* *
17929586 TCATTCCCAATCTAAG-ATC-G-GACCAGG-CCAAGGGTTGCGACAGCACATGCTGGGCTCAGGC
391 TCATTCCCAGTCTAAGCATCAGAGACCAGGACCAAGGGTTGCGACAGCACATGCTGGGCTCGGGC
*
17929647 ATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCGGGAGCATCATCGGAGAACCTGAC
456 ATGTGCTGGTGCCGCATTTTTCTTC-TCGGGGCACCATCGC-GGAGCATCATCGGAGAACCTGAC
* * *
17929712 AGGCGACATTGGGGTTCCGACGATCGGGGGGATCGGGGGGTGTGCGCACATGATGTGCGATGGGT
519 TGGCGGCATTGGGGTTCCGACGATCGGGGGG-CCGGGGGGTGTGCGCACATGATGTGCGATGGGT
* * *
17929777 ACTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTCACA-CCCCTT
583 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
*
17929841 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCGAGT-GCCCATTAAAGTGTCTGAAATGGGGACA
648 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG-CCATTAAAGTGTCTGAAATGGGGACA
* * * * *
17929905 CTTTTTTCAAATGGTCACAAAATCTTGTCCACTTCGGGTTTCTAGCTGAATTTTTTTGTACGTGC
712 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* ** *
17929970 CAAAAAAAATACAAGGATCGCACCTACCAAGTTTAGGGCCAAAACTCCTTCCGAAAAAATTTTAA
777 CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
*
17930035 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCA
842 AAAATCCCGAACCGCAAAAAGTTTCAAAAATCA
* * *
17930068 TGAAAAATAGAAAACAAGTCGTCTTGCCACGAAACTTCACATGAAGGCTTAAGGGACCATTGTAT
1 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* *
17930133 GAATTTACAAGCCATGAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTA
66 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * * * *
17930198 CCACCTTATCGATCCATGGCTTGCACATCTCGTCTCTCTGGCCGGCATAGTGCCCTCCCGCCCGC
131 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA--G---T---GCCCGC
* * * *
17930263 CCGCCCGCCCGCTCATTTTGTCGGTTGGCCTAGGCATACGGAGTTCATTCCCAGTCTAGGATCAG
188 CCGCCCGCCCGCTCCTGTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * ** *
17930328 ACCAGACCGAGGGTTGCAGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGC
253 ACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCAGC
* * * * *
17930393 TTACGCATCCCGCCCCTTTGGCCGACTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCA
318 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCA
* *
17930458 TACGGAGTTCATTTCCAGTCGAAGCATACAGAGTTCATTCTCAGCCTAAGATCGGATCGGATCGA
383 TACGGAGTTCATTCCCAGTCTAAGCAT-CAGAG---A--C-CAG-----GA-C----C--A---A
** * * * *
17930523 GGGTTGCGGTAGCACATGCTGGGCTCGGGCAGGTGCTGGTGTCGCATTTTTCTTCACTAGGGCAC
426 GGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCTC-GGGGCAC
* * * * *
17930588 CATCGTCAGAGAATCGTCGGAGAACCTGACTGGCGGCATTGAGGTTCCGGCGATC-----G--GG
490 CATCG-CGGAGCATCATCGGAGAACCTGACTGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGG
* * * * *
17930646 GGGGTGTGTGCACATGATCTGTGATGGGTGCTGGTACATGGCCCTTATATTGGCCCCCTATTCCT
554 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* * *
17930711 CA-CTAAACCTCGAGAACTCACACACCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCCGCCAG
619 CATC-AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* *
17930775 TAGCCATTAAAGTGTCTGAAATGTGGACACTTTTTTCAAATGGTCGCAAAATCTTGTACACTTCG
683 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * *
17930840 AGTTTTTAGTTGAATTTTTTTGTGCAAGCCAAAAAAAATACAAGGATCACGCCTACCAAGTTTGG
748 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * *** * ** *
17930905 GGCGAAAACTCCATCCGAAAAAATTTTAAAAAATTTTGAACCCCAAAAAGTTTTGAAAATTA
813 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCA
* * * *
17930967 TGAAAAATGGAAAACGGGTCATCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTAT
1 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
** *
17931032 GAATTTACAAGCCATAAAAATGGCATTGGCACACTGAAATATGAAGATGTGCCTAAACCCACCTA
66 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
**
17931097 CCACCCTATCGATCCACGGCTTATGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGC
131 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGC
* * * * *
17931162 CCGC-CAACTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAATCTAAGGTCAAACC
196 CCGCTC--CT-G-TT-GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * * * *
17931226 GGACTGAGGGTTGCAGTAGCAGGATCGGCAGCACGGAGAGGGGGACCCGGCCGATCCCCGGCTTG
256 AGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCAGCTTG
* * * * * * * **
17931291 CGCATCCCGCCCCTCTGGTCGGCTTAACGCCCACAGGCTCATTTCCTAAGTTGACTTAGGCATAC
321 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC
* * *
17931356 GGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTT-C-ATTC
386 GGAGTTCATTCCCAGTCTAAGCAT-CAGAG---A---CCAG---GA-C-CA-AGGGTTGCGA---
* *
17931419 CCAGTCTAAGATCGGATCGGACCGAGGGTTACGGTAGCACATGCTGGGCTCAAGCATGTGCTGGT
435 -CAG-C----A-C--AT--G--C-TGGGCT-CGG--G--CA---T--G-T---GC-T-----GGT
* *** * ** * *** *
17931484 GCCGCATTTTTCTTCGCTGACACACCATCGTTGGAGCATCGCCGGAGAAGCTGACCAACGACA-T
466 GCCGCATTTTTCTTCTC-GGGGCACCATCG-CGGAGCATCATCGGAGAACCTGACTGGCGGCATT
* * **
17931548 CGGGTTCCGGCGATCGGGGGGCCGGGGGGTTGTGCGCACATGATGTATGATGGGTGCTGGTACTT
529 GGGGTTCCGACGATCGGGGGGCCGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
*
17931613 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTCAAAGAGCATT
593 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* * *
17931678 TGAGATTTTATAGGTTTGCTACCAGTAGCCGTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
658 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* *
17931743 TGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AACAAAATA
723 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATA
* * * *
17931807 CAAGGATCATGTCTACCAAGTTTGAGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAA
788 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC-GA
* ** *
17931872 ACCGTAAAAAGTTTTGAAAATCG
852 ACCGCAAAAAGTTTCAAAAATCA
* *
17931895 TGAAAAATAGAAAAGGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
1 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* **
17931960 GAATTTACAAGCCATAAAAATGGCATTGGAACACAGAAATATGAAGATGTGCCTAAACCCACCTA
66 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
*
17932025 CCACCCTATCGATCCACGGCTTGTGCATCCTC-TCTCTCTGGCC-AGCGTAGTGCCCGCCCGTCA
131 CCACCCTATCGATCCACGGCTTGCGCATCC-CGTCTCTCTGGCCGA-CGTAGTGCCCG-CC--C-
* *
17932088 GCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GAA
190 GCCCGCCCGCTCCTGTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-A
* * * * * * *
17932152 CCAGATCGAGGGTTGTGGCAACAGGATCGGTAGCACGCAGAGGGGGACCCGACTGATCCCCAACT
254 CCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCAGCT
** * * * *
17932217 TGCGCATATCGGCCCTCTGGCCGGCTGAGCTCCCGGACGCTCGTTTCATGGGTTGACTTAGACAT
319 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCAT
* **
17932282 ATGGAGTTCATTCCCAGTCCATGCAAACGGAGTTCATTCCCAGTCTAAGATTGGACCA-GACTGA
384 ACGGAGTTCATTCCCAGT-C-T----A---AG--------CA-TC--AGA---GACCAGGACCAA
* * * *
17932346 GGGTTGCGACAACACATGCTGGGCTCGGGCATATGCTAGTGCCGCATTTTTCTTCGTCTGGGCAC
426 GGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-TCGGGGCAC
* * *
17932411 CATCGTCGGAGCATCACCGGGGAACCTGACTGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCG
490 CATCG-CGGAGCATCATCGGAGAACCTGACTGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCG
*
17932476 TGGGGGTGTGCGCATATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
553 -GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* *
17932541 CTCATCAAACCTCGAGAACTCACACCCCCTCAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCA
617 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
*
17932606 GGAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACCTT
682 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA-CTT
* * *
17932671 -GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAAAAGGATCATGTCTACCCAGTTT
746 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT
* * *
17932735 GGGGCCAAAACTCCCTT-CGAAAAAATTTTAAAAAATCCTGAACCACCAAAAGTTTCAAAAATCA
811 GGGGCCAAAACT-CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCA
* * * *
17932799 TTAAAAATAGAAAACGAGTCATCTTGCCGTGAAACTTCACGTGAAGGCTTAAAGGACCATTGTAT
1 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* *
17932864 GAATTTACAAGCCATAAAAATGGCAGTGGCATGCAAAAATATTG-AGATGTGCCTAAACCCACCT
66 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA-TGAAGATGTGCCTAAACCCACCT
* * * * * *
17932928 ACCACCCTATCGATCGACGACTTGCGCATCCTGTCTCTCTGGGCGGCGTAGT----GCCAGCCCG
130 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG
* * * *
17932989 CTCG-T--T-TCGTCGGTTGGCTTAGGCATACGGAATTCATTCCTAGTGC-AAGATCAGACCAGA
195 CCCGCTCCTGTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT-CTAAGATCAGACCAGA
* * ** ** * * * *
17933049 GCGAGGGTTACGATAGCAGGATCAACAGCACACAGTGAGGGACCCGGCCGATCCCC-GACTTGTG
259 CCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCAG-CTTGCG
* * * * *
17933113 CATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACACTCGTTTCGTGGGTTCACTTAGGCATACAG
323 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGG
* *
17933178 AGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTT
388 AGTTCATTCCC-A-GT---C-TA---AG--CA-T--CAG----AGA-C---CAGGACCAAGGGTT
* *
17933243 ACGACAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCA
431 GCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-TCGGGGCACCATC-
* ** * * * * * * *
17933308 TCGGAGCATCGCCAGAGAACCTGACCGACGGCATTGGGGTTCCGATGATCGGAAGAGCCGTGGGG
494 GCGGAGCATCATCGGAGAACCTGACTGGCGGCATTGGGGTTCCGACGATCGG-GGGGCCGGGGGG
* *
17933373 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTGTCCCTCATC
558 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
*
17933438 AAACCTCGAGAACTCACACCTCCTTAAA
623 AAACCTCGAGAACTCACACCCCCTTAAA
17933466 TATGAATTTA
Statistics
Matches: 5104, Mismatches: 691, Indels: 518
0.81 0.11 0.08
Matches are distributed among these distances:
848 47 0.01
849 1 0.00
850 2 0.00
851 1 0.00
853 1 0.00
854 1 0.00
857 3 0.00
859 3 0.00
861 2 0.00
862 7 0.00
865 1 0.00
866 1 0.00
867 2 0.00
868 2 0.00
869 1 0.00
870 1 0.00
871 121 0.02
872 416 0.08
873 587 0.12
874 25 0.00
875 192 0.04
876 5 0.00
877 3 0.00
878 69 0.01
879 88 0.02
880 195 0.04
881 3 0.00
882 2 0.00
883 3 0.00
884 1 0.00
885 7 0.00
886 13 0.00
887 3 0.00
888 6 0.00
889 2 0.00
890 7 0.00
891 113 0.02
892 279 0.05
893 11 0.00
894 7 0.00
895 194 0.04
896 18 0.00
897 4 0.00
898 83 0.02
899 367 0.07
900 4 0.00
901 13 0.00
902 60 0.01
903 20 0.00
904 400 0.08
905 71 0.01
906 111 0.02
907 3 0.00
908 6 0.00
909 1 0.00
910 2 0.00
911 2 0.00
912 179 0.04
913 13 0.00
914 11 0.00
915 10 0.00
916 3 0.00
917 55 0.01
918 15 0.00
919 314 0.06
920 51 0.01
921 176 0.03
922 4 0.00
923 1 0.00
925 2 0.00
927 70 0.01
928 556 0.11
929 8 0.00
930 2 0.00
931 2 0.00
932 10 0.00
933 1 0.00
934 2 0.00
935 2 0.00
937 7 0.00
938 2 0.00
939 2 0.00
940 1 0.00
944 3 0.00
945 3 0.00
946 1 0.00
947 4 0.00
950 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (874 bp):
TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGC
CCGCTCCTGTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACC
GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCAGCTTGCGCAT
CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGT
TCATTCCCAGTCTAAGCATCAGAGACCAGGACCAAGGGTTGCGACAGCACATGCTGGGCTCGGGC
ATGTGCTGGTGCCGCATTTTTCTTCTCGGGGCACCATCGCGGAGCATCATCGGAGAACCTGACTG
GCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
TCCCGAACCGCAAAAAGTTTCAAAAATCA
Found at i:17930899 original size:899 final size:894
Alignment explanation
Indices: 17929575--17933465 Score: 4787
Period size: 928 Copynumber: 4.3 Consensus size: 894
17929565 GTTGACTTAG
* *
17929575 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGG-CCAAGGGTTGCGACAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-GGACCGAGGGTTGCGACAGCACATGCTGG
* * * **
17929639 GCTCAGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCG-CGGGAGCATCATCGGA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC--CTGGGCACCATCGTC-GGAGCATCGCCGGA
* * *
17929703 GAACCTGACAGGCGACATTGGGGTTCCGACGATCGGGGGGATCGGGGGGTGTGCGCACATGATGT
127 GAACCTGACCGGCGGCATTGGGGTTCCGGCGATC----GG--CGGGGGGTGTGCGCACATGATGT
* * *
17929768 GCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTCA
186 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
17929833 CACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCGAGT-GCCCATTAAAGTGTCTGAAA
251 CACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG-CCATTAAAGTGTCTGAAA
* * *
17929897 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTCCACTTCGGGTTTCTAGCTGAATTTTTTT
315 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
17929962 GTACGTGCCAAAAAAAATACAAGGATCGCACCTACCAAGTTTAGGGCCAAAACTCCTTCCGAAAA
380 GTGCATGCCAAAAAAAATACAAGGATCACGCCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * *
17930027 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCT
445 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCT
* * *
17930092 TGCCACGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATGAAAATGGC
510 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** * * *
17930157 ATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCTTATCGATCCATGGCTTGC
575 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
17930222 ACATCTCGTCTCTCTGGCCGGCATAGTGCCCTCCCGCCCGCCCGCCCGCCCGCTCATTTTGTCGG
640 GCATCTCGTCTCTCTGGCCGGCGTAGTG----CCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGG
* *
17930287 TTGGCCTAGGCATACGGAGTTCATTCCCAGTCTAGGATCAGACCAGACCGAGGGTTGCAGTAGCA
701 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGTAGCA
* * * *
17930352 GGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTACGCATCCCGCCCCTTTGGCCG
766 GGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCG
* * *
17930417 ACTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCGAA
831 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCGAA
* * * * * **
17930481 GCATACAGAGTTCATTCTCAGCCTAAGATCGGATCGGATCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * *
17930546 CTCGGGCAGGTGCTGGTGTCGCATTTTTCTTCACTAGGGCACCATCGTCAGAGAATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-CT-GGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * *
17930611 ACCTGACTGGCGGCATTGAGGTTCCGGCGATC-G-GGGGGGTGTGTGCACATGATCTGTGATGGG
129 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGCGGGGGGTGTGCGCACATGATGTGCGATGGG
* *
17930674 TGCTGGTACATGGCCCTTATATTGGCCCCCTATTCCTCA-CTAAACCTCGAGAACTCACACACCC
194 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC-AAACCTCGAGAACTCACAC-CCC
* * *
17930738 TTAAAGAGCATTTGAGATTTTATAGGTTTGCCGCCAGTAGCCATTAAAGTGTCTGAAATGTGGAC
257 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * *
17930803 ACTTTTTTCAAATGGTCGCAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTGCAAG
322 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* *
17930868 CCAAAAAAAATACAAGGATCACGCCTACCAAGTTTGGGGCGAAAACTCCATCCGAAAAAATTTTA
387 CCAAAAAAAATACAAGGATCACGCCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
*** * ** * * *
17930933 AAAAATTTTGAACCCCAAAAAGTTTTGAAAATTATGAAAAATGGAAAACGGGTCATCTTGCCATG
452 AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATG
*
17930998 AAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
517 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* ** *
17931063 CACTGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTATGCATCCC
582 CACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTC
* ** *
17931128 GTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCAACTCGTTTCATCGGTTGGCTTAGGC
647 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * * * *
17931193 ATACAGAGTTCATTCCCAATCTAAGGTCAAACCGGACTGAGGGTTGCAGTAGCAGGATCGGCAGC
712 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGTAGCAGGATCGGCAGC
* * * * * *
17931258 ACGGAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGGCTTAACGCCC
777 ACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* * * * **
17931323 ACAGGCTCATTTCCTAAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGA
842 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC---G-----A-A
* *
17931385 GTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTA
1 G--CA-T---A--C---G------GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG
** ** **
17931450 CGGTAGCACATGCTGGGCTCAAGCATGTGCTGGTGCCGCATTTTTCTTCGCTGACACACCATCGT
49 CGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-CTG-GGCACCATCGT
* * ** * *
17931515 TGGAGCATCGCCGGAGAAGCTGACCAACGACA-TCGGGTTCCGGCGATCGGGGGGCCGGGGGGTT
112 CGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATC----GG-CGGGGGG-T
**
17931579 GTGCGCACATGATGTATGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
171 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* * * *
17931644 AACCTCGAGAACTCACACCCCCTCAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTAGCCG
236 AACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
*
17931709 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTT
300 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * * *
17931774 TAGCTGAATTTTTTTGTGCATGCC-AACAAAATACAAGGATCATGTCTACCAAGTTTGAGGCCAA
365 TAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGCCTACCAAGTTTGGGGCCAA
* * * ** *
17931838 AACTCCTTCCAAAAAAATTTTAAAAAATCCCAAAACCGTAAAAAGTTTTGAAAATCGTGAAAAAT
430 AACTCCTTCCGAAAAAATTTTAAAAAATCCC-GAACCGCAAAAAGTTTCAAAAATCATGAAAAAT
* **
17931903 AGAAAAGGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
494 AGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
*
17931968 AAGCCATAAAAATGGCATTGGAACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
559 AAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * *
17932033 TCGATCCACGGCTTGTGCATCCTC-TCTCTCTGGCCAGCGTAGTGCCCGCCCGTCAGCCCGCCCG
624 TCGATCCACGGCTTGCGCAT-CTCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCG
* *
17932097 CTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCAGATCGA
688 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGA
** * * * * * **
17932161 GGGTTGTGGCAACAGGATCGGTAGCACGCAGAGGGGGACCCGACTGATCCCCAACTTGCGCATAT
752 GGGTTGCAGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCC
* * * * * *
17932226 CGGCCCTCTGGCCGGCTGAGCTCCCGGACGCTCGTTTCATGGGTTGACTTAGACATATGGAGTTC
817 CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* *
17932291 ATTCCCAGTCCAT
882 ATTCCCAGTCGAA
* * * * *
17932304 GCAAACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGCGACAACACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * *
17932369 CTCGGGCATATGCTAGTGCCGCATTTTTCTTCGTCTGGGCACCATCGTCGGAGCATCACCGGGGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTC--CTGGGCACCATCGTCGGAGCATCGCCGGAGA
* *
17932434 ACCTGACTGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGTGGGGGTGTGCGCATATGATGTG
129 ACCTGACCGGCGGCATTGGGGTTCCGGCGATC-----GG-CG-GGGGGTGTGCGCACATGATGTG
17932499 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
187 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
17932564 ACCCCCTCAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGGAGCCATTAAAGTGTCTGAAAT
252 A-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
17932629 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACCTT-GAGTTTTTAGCTGAATTTTTTT
316 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA-CTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
17932693 GTGCATGCCAAAAAAAATAAAAGGATCATGTCTACCCAGTTTGGGGCCAAAACTCCCTT-CGAAA
380 GTGCATGCCAAAAAAAATACAAGGATCACGCCTACCAAGTTTGGGGCCAAAACT-CCTTCCGAAA
* * * *
17932757 AAATTTTAAAAAATCCTGAACCACCAAAAGTTTCAAAAATCATTAAAAATAGAAAACGAGTCATC
444 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATC
* *
17932822 TTGCCGTGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGG
509 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* ** * * *
17932887 CAGTGGCATGCAAAAATATTG-AGATGTGCCTAAACCCACCTACCACCCTATCGATCGACGACTT
574 CATTGGCACACAGAAATA-TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
17932951 GCGCATC-CTGTCTCTCTGGGCGGCGTAGT------------GCCAGCCCGCTCGTTTCGTCGGT
638 GCGCATCTC-GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGT
* * * *
17933003 TGGCTTAGGCATACGGAATTCATTCCTAGTGC-AAGATCAGACCAGAGCGAGGGTTAC-GATAGC
702 TGGCTTAGGCATACGGAGTTCATTCCCAGT-CTAAGATCAGACCAGACCGAGGGTTGCAG-TAGC
** * * * * *
17933066 AGGATCAACAGCACACAGTGAGGGACCCGGCCGATCCCCGACTTGTGCATCCCGCCCCTCTGGCC
765 AGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCC
* * * * * *
17933131 GGTTGAGCGCCCGCACACTCGTTTCGTGGGTTCACTTAGGCATACAGAGTTCATTCCCAATCTAA
830 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCGAA
* * *
17933196 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * *
17933261 CTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGCCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTC--CTGGGCACCATCGTCGGAGCATCGCCGGAGA
* ** *
17933326 ACCTGACCGACGGCATTGGGGTTCCGATGATCGGAAGAGCCGTGGGGTGTGCGCACATGATGTGC
129 ACCTGACCGGCGGCATTGGGGTTCCGGCGATC----G-G-CGGGGGGTGTGCGCACATGATGTGC
* *
17933391 GATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTGTCCCTCATCAAACCTCGAGAACTCACA
188 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
17933456 CCTCCTTAAA
253 CC-CCTTAAA
17933466 TATGAATTTA
Statistics
Matches: 2591, Mismatches: 333, Indels: 137
0.85 0.11 0.04
Matches are distributed among these distances:
890 2 0.00
891 94 0.04
892 322 0.12
893 2 0.00
895 194 0.07
897 1 0.00
898 81 0.03
899 367 0.14
900 1 0.00
901 1 0.00
902 112 0.04
903 20 0.01
904 395 0.15
905 73 0.03
906 139 0.05
907 2 0.00
908 1 0.00
910 1 0.00
911 1 0.00
912 1 0.00
913 1 0.00
917 2 0.00
919 1 0.00
920 16 0.01
921 116 0.04
925 1 0.00
927 67 0.03
928 573 0.22
929 4 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (894 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCCTGGGCACCATCGTCGGAGCATCGCCGGAGAAC
CTGACCGGCGGCATTGGGGTTCCGGCGATCGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
AAAAAATACAAGGATCACGCCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
ATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAAC
TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACA
GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCT
CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGTAGCAGGATCGGCAGCACGC
AGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCGAA
Found at i:17931386 original size:26 final size:26
Alignment explanation
Indices: 17931350--17931428 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
17931340 GTTGACTTAG
*
17931350 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17931376 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17931402 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17931428 G
1 G
17931429 ATCGGATCGG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17933206 original size:26 final size:26
Alignment explanation
Indices: 17933170--17933222 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17933160 GTTCACTTAG
17933170 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
* *
17933196 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
17933222 G
1 G
17933223 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:17933825 original size:26 final size:26
Alignment explanation
Indices: 17933789--17933839 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
17933779 TCACTTAGGC
17933789 ATACGGAGTTCATTCCCAGTCTAAGT
1 ATACGGAGTTCATTCCCAGTCTAAGT
17933815 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
17933840 ATCGGACAGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGT
Found at i:17934981 original size:26 final size:26
Alignment explanation
Indices: 17934945--17934997 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17934935 GTTGACTTAG
*
17934945 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
17934971 GCATACGGAGTTCATTTCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17934997 G
1 G
17934998 TTCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17935724 original size:26 final size:26
Alignment explanation
Indices: 17935688--17935740 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17935678 GTTGGCTTAG
17935688 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCATTCCCAGTATAA
* * *
17935714 GCATATGGAGTTGATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTATAA
17935740 G
1 G
17935741 ATCGGAACAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTATAA
Found at i:17936347 original size:744 final size:743
Alignment explanation
Indices: 17934921--17936458 Score: 2326
Period size: 744 Copynumber: 2.1 Consensus size: 743
17934911 AGCGCCGGCA
* * *
17934921 CGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * * * **
17934986 TTCCAGTGTAAGTTCAGACCAGACCGAGGTTTGTGGCAGCACATGCTGGGCTCAGGCATGTGCTG
66 TCCCAGTCTAAGATCAGAACAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCAGGCATGTGCTG
*
17935051 GTGCCACATTTTTCTTCGTCCGGGCACCATCGTCGGACCATCGTAGGAGAACCTGACCGACGGCA
131 GTGCCACATTTTTCTTCGTCCGGGCACCATCGTCGGACCATCGTAGGAAAACCTGACCGACGGCA
* * *
17935116 TTGGGGTTCCGACGATCGGGGGGCCGGAGGGGTGTGCGCACATGATGTGCGGTGGGTGCTGGTAC
196 TTAGGGTTCCGACGATCGGGGGGCCGGAGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTAC
* * *
17935181 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACTCCCGTTGAAGAGCAT
261 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCTTAAAGAGCAT
* * * * *
17935246 TTAAGATTTTACAGGTTTGCTGCCAGTAGTCGTTAAAGTGTCTGAAATGGGGACACTATTTTCAA
326 TTAAGATGTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTATTTTCAA
* **
17935311 ATTGTCACAAAATCTTGTACACTTTGAGGTTTTAGCTGTATTTTTTTGTGCATGCCAACAAAAAT
391 ATGGTCACAAAATCTTGTACACTTTGAGGTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAAT
* * * ***
17935376 ACAAGGATCACGTCTGCCAAGGTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGA
456 ACAAAGATCACGTCTACCAAGGTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAA
* * * *
17935441 ACCGTAAAAAGTTTCAAAAATCGAGAAAAATAGAAAATGAGTCGTCTTGCCATGATACTTCACAT
521 ACCGCAAAAAGTTTCAAAAATCGAGAAAAATAGAAAACGAGTCGTCTTCCCATGAAACTTCACAT
* *
17935506 GAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCATTGGCATGTAGAAATAT
586 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCATTGGCATGCAGAAATAT
* * * * *
17935571 GAAAATGTGGCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCTCGTCTCTCTGGC
651 GAAAATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTGGCGCATCCCGTCTCTCTGGC
* *
17935636 CGGCGTAGCGCCCGCCCGCCCGCCCGCC
716 CGACGTAGCGCCCACCCGCCCGCCCGCC
* * * *
17935664 TGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTATAAGCATATGGAGTTGAT
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* *
17935729 TCCCAGTCTAAGATCGGAACAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTG
66 TCCCAGTCTAAGATCAGAACAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCAGGCATGTGCTG
* ** ** * * * *
17935794 GTGTCGTATTTTTCTTCGTTGGGGCACCATCGTCGGAGCATCGTCGGAAAACCTGACCGGCGGTA
131 GTGCCACATTTTTCTTCGTCCGGGCACCATCGTCGGACCATCGTAGGAAAACCTGACCGACGGCA
17935859 TTAGGGTTCCGACGATCAGGGGGGCCGG-GGGGTTGTGCACACATGATGTGCGATGGGTGCTGGT
196 TTAGGGTTCCGACGATC-GGGGGGCCGGAGGGG-TGTGCACACATGATGTGCGATGGGTGCTGGT
17935923 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCTTCAAAGAG
259 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCTT-AAAGAG
* *
17935988 CATTTTAGATGTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTAAAAT-GGGACACTTTTTT
323 CATTTAAGATGTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTATTTT
*
17936052 CAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAA
388 CAAATGGTCACAAAATCTTGTACACTTTGAGGTTTTAGCTAAATTTTTTTGTGCATGCCAACAAA
* * * * *
17936117 AATACAAAGATCATGTCTACTAAGTTTTGGGCCAAAAGTCCTTCCAAAAAAATTTTAAAAAATCC
453 AATACAAAGATCACGTCTACCAAGGTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCC
* *
17936182 CAAACCGCAAAAAGTTTCAAAAATC-ATGATAAATAGAAAACGAGTCGTCTTCCCTTGAAACTTC
518 CAAACCGCAAAAAGTTTCAAAAATCGA-GAAAAATAGAAAACGAGTCGTCTTCCCATGAAACTTC
* *
17936246 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
582 ACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCATTGGCATGCAGAA
*
17936311 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTGGCGCATCCCGTCTCTC
647 ATATGAAAATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTGGCGCATCCCGTCTCTC
*
17936376 TGGCCGACGTAGTGCCCACCCGCCCGCCCGCC
712 TGGCCGACGTAGCGCCCACCCGCCCGCCCGCC
* ** *
17936408 CGCTCGTTTCGTCGATTGGCTTAGGCATACAAACTTCATTCCCAGTCTAAG
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
17936459 ATTTGACCAA
Statistics
Matches: 712, Mismatches: 79, Indels: 7
0.89 0.10 0.01
Matches are distributed among these distances:
743 190 0.27
744 472 0.66
745 50 0.07
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (743 bp):
CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
TCCCAGTCTAAGATCAGAACAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCAGGCATGTGCTG
GTGCCACATTTTTCTTCGTCCGGGCACCATCGTCGGACCATCGTAGGAAAACCTGACCGACGGCA
TTAGGGTTCCGACGATCGGGGGGCCGGAGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTAC
TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCTTAAAGAGCAT
TTAAGATGTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTATTTTCAA
ATGGTCACAAAATCTTGTACACTTTGAGGTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAAT
ACAAAGATCACGTCTACCAAGGTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAA
ACCGCAAAAAGTTTCAAAAATCGAGAAAAATAGAAAACGAGTCGTCTTCCCATGAAACTTCACAT
GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCATTGGCATGCAGAAATAT
GAAAATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTGGCGCATCCCGTCTCTCTGGC
CGACGTAGCGCCCACCCGCCCGCCCGCC
Found at i:17936620 original size:26 final size:26
Alignment explanation
Indices: 17936591--17936643 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17936581 GTTGATTTAG
17936591 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17936617 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17936643 G
1 G
17936644 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17937890 original size:582 final size:580
Alignment explanation
Indices: 17936788--17937937 Score: 2131
Period size: 582 Copynumber: 2.0 Consensus size: 580
17936778 CGGAGGGGTC
* * * *
17936788 GGGGGGTGTGCGGACATGATGTGTGATGGGTGCTAGTACTTGGCCCTTATACTGGCCCTATATCC
1 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGACCCTTATACTGGCCCCATATCC
17936853 CTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
66 CTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* *
17936918 GTAGCCATTAAAGTGTCTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
131 GTAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
*
17936983 GAGTTTTTAGCTGAATTTTTTTACGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTG
196 GAGTTTTTAGCTGAATATTTTTACGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTG
17937048 GGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCGAACCGCAAAATTTTTTTGAAAATCAT
261 GGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCGAACCGCAAAATTTTTTTGAAAATCAT
17937113 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAACGCTTAAGGGACCATTGTATG
326 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAACGCTTAAGGGACCATTGTATG
*
17937178 AATGTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTAC
391 AATGTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCAACTAC
17937243 CACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGCT
456 CACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGCT
17937308 CGTTTCGTCGATCGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCGGGGGGGCCG
521 CGTTTCGTCGATCGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCGGGGGGGCCG
* * *
17937368 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGACCCTTATATTGGCCCCCTATCC
1 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGACCCTTATACTGGCCCCATATCC
* *
17937433 CTCATCAAACCTTGAGAACTCACACCCCCCCTTAAAGAGCATTTGATATTTTGCAGGTTTGCTGC
66 CTCATCAAACCTTGAGAACTCACA--CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
17937498 CAGTAGCCATTAAAGTGT-TCGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
129 CAGTAGCCATTAAAGTGTCT-GAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
17937562 TTCGAGTTTTTAGCTGAATATTTTTACGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGT
193 TTCGAGTTTTTAGCTGAATATTTTTACGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGT
17937627 TTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCGAACCGCAAAATTTTTTTGAAAAT
258 TTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCGAACCGCAAAATTTTTTTGAAAAT
17937692 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAACGCTTAAGGGACCATTGT
323 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAACGCTTAAGGGACCATTGT
17937757 ATGAATGTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCAAC
388 ATGAATGTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCAAC
*
17937822 TACCACCCTATCGATCCATGGCTTGCGCATCTCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCC
453 TACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCC
*
17937887 GCTCGTTTCGTCGATCGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGA
518 GCTCGTTTCGTCGATCGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
17937938 TCGGACTGAA
Statistics
Matches: 552, Mismatches: 15, Indels: 4
0.97 0.03 0.01
Matches are distributed among these distances:
580 82 0.15
581 1 0.00
582 469 0.85
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (580 bp):
GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGACCCTTATACTGGCCCCATATCC
CTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
GTAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
GAGTTTTTAGCTGAATATTTTTACGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTG
GGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCGAACCGCAAAATTTTTTTGAAAATCAT
GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAACGCTTAAGGGACCATTGTATG
AATGTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCAACTAC
CACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGCT
CGTTTCGTCGATCGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCGGGGGGGCCG
Found at i:17938098 original size:26 final size:26
Alignment explanation
Indices: 17938068--17938120 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17938058 GTTGACTTAG
17938068 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTTCCAGTCTAA
*
17938094 GCATACGGAGTTCATTTCCAGTGTAA
1 GCATACGGAGTTCATTTCCAGTCTAA
17938120 G
1 G
17938121 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTTCCAGTCTAA
Found at i:17939380 original size:899 final size:892
Alignment explanation
Indices: 17937359--17939656 Score: 3392
Period size: 899 Copynumber: 2.6 Consensus size: 892
17937349 TCTAAGACCG
* *
17937359 GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGACCCTTATATTGGC
1 GGGGGGCC-GGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* * * *
17937424 CCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCCCTTAAAGAGCATTTGATATTTTGCAG
65 CCCCTATCCCTCATCAAACCTCGAGAACTCACA--CCCCCTTAAAGAGCATTTGAGATTTTACAA
*
17937489 GTTTGCTGCCAGTAGCCATTAAAGTGT-TCGAAATGAGGACACTTTTTTCAAATGGTCACAAAAT
128 GTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * ** *
17937553 CTTGTACACTTCGAGTTTTTAGCTGAATATTTTTACGCATGCCAACAAAAATACAAGGATCATGT
192 CTTGAACACTTTGAGTTTTTAGCTGAATATTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* **
17937618 CTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCGAACCGCAAAATTTT
257 CTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAT-CCGAACCGCAAAA-AGT
** * *
17937683 TTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAACGCTTAAGG
320 TTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
* *
17937748 GACCATTGTATGAATGTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCT
385 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCT
* * *
17937813 AAACCCAACTACCACCCTATCGATCCATGGCTTGCGCATCTCGTCTCTCTGGCCGACGTAGTGCC
450 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGACATAGTGCC
* *
17937878 CACCCGCCCGCTCGTTTCGTCGATCGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGA
515 CACCCGCCCGCTCGTTTCATCGATCGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCGGA
* * * *
17937943 CTGAACCGAGGGTTGTGGCAGCAGGATCGGCAACACGTAGAGGGGGACCCGATGATCCCCGGCTT
580 CCGAACCGAGGGTTGCGGCAGCAGGATCGACAACACGCAGAGGGGGACCCGATGATCCCCGGCTT
*
17938008 ACCCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATA
645 ACCCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATA
* * * * * *
17938073 CGGAGTTCATTTCCAGTCTAAGCATACGGAGTTCATTTCCAGTGTAAGATCAGACCGGAATGAGG
710 CGGAGTTCATTACCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGACCGGAACGAGG
* * * *
17938138 GATGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTCACCGGGGCACCA
775 GATACGACAGCACATGCTGGGCTCGAGCACGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCA
** *
17938203 TCGCCGGAGCATCGTCGGAGAACCTAACCGGTGGCATTGAGGTTCTAGCGATC
840 TCGCCGGAGCATCACCGGAGAACCTAACCGGCGGCATTGAGGTTCTAGCGATC
*
17938256 GGGGGGGCGGGGGG-GTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
1 GGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* *
17938320 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGTGATTTTA-TAGAT
66 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAG-T
*
17938384 TTGCTGCCAGTAGCCTTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
130 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * *
17938449 -ATGCACTTTGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACCAAAATACAAGGATCACGTCT
195 GA-ACACTTTGAGTTTTTAGCTGAATATTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * * * *
17938513 ATCAAGTTTGCGGCCAAAACTCCTTCCAAAAAAATTTAAAAAAATCTCAAACCGTAAAAAGTTTC
259 ACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATC-CGAACCGCAAAAAGTTTC
* *
17938578 AAAAATCGTGGAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
323 AAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* *
17938643 CATTGTATGAATTTTCAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAG
388 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAA
* * *
17938708 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACATAGTTCCCGC
453 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGACATAGTGCCCAC
* ** *
17938773 CCGCCCGCTCGCTTATTTCATC-AGTTGGCTTAGGCATGTAGAGTTCATTCGC-AGTCTAAGATT
518 CCGCCCGCTCG----TTTCATCGA-TCGGCTTAGGCATACAGAGTTCATTC-CTAGTCTAAGATC
* * * * *
17938836 GGACCGGACCGATGGTTGCGGCAGCAGGATCGACAGCATGCAGAGGGTGACCCGATCGATCCCCG
577 GGACCGAACCGAGGGTTGCGGCAGCAGGATCGACAACACGCAGAGGGGGACCCGAT-GATCCCCG
* * * * * *
17938901 GCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGG
641 GCTTACCCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGG
* * * *
17938966 CATATGGAGTTCATTACCAGTGTAAGCATACAGAGTTCATTCCCAATCTAAGATCGGACCGGACC
706 CATACGGAGTTCATTACCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGACCGGAAC
* * * *
17939031 GAGGGTTACGGCAGCACATGCTGGGCTCGAGCACGTGCTGGTGCCATATTTTTCTTCATCGGGGC
771 GAGGGATACGACAGCACATGCTGGGCTCGAGCACGTGCTGGTGCCACATTTTTCTTCACCGGGGC
* * *
17939096 ACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATT-AGGGTTCTGGCGATC
836 ACCATCGCCGGAGCATCACCGGAGAACCTAACCGGCGGCATTGA-GGTTCTAGCGATC
*
17939153 GGGGGGCCAGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTTCTTGGCCCTTATATTGGC
1 GGGGGGCC-GGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* * * *
17939218 CCCCTA-CCCTTCATTAGACCTCAAGAACTCACACCCCCTTAAAGAGCATTCGAGATTTTACAAG
65 CCCCTATCCC-TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAG
17939282 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
129 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
17939347 TGAACACTTTGAGTTTTTAGCTGAAGT-TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
194 TGAACACTTTGAGTTTTTAGCTGAA-TATTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* *
17939411 TACCAAGTTTGGGGCCGGAAA-TCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTT
258 TACCAAGTTTGGGGCC-AAAACTCCTTCCAAAAAAATTTTAAAAAATCC-GAACCGCAAAAAGTT
* * *
17939475 TCAAAAATCATGAAAAATAAAAAACGAGCCGTCTTGCCATGAAACTTCGCGTGAAGGCTTAAAGG
321 TCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* * *
17939540 ACCATTGAATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATATGCCTA
386 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTA
* *
17939605 AACCCACCTACCACCCTATCGATACACGGCTTGCACATCTCGTCTCTCTGGC
451 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGC
17939657 TGGCGTAGTG
Statistics
Matches: 1261, Mismatches: 120, Indels: 38
0.89 0.08 0.03
Matches are distributed among these distances:
892 196 0.16
893 192 0.15
894 1 0.00
895 80 0.06
896 92 0.07
897 242 0.19
898 10 0.01
899 441 0.35
900 7 0.01
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (892 bp):
GGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTT
TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
AACACTTTGAGTTTTTAGCTGAATATTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
CAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCGAACCGCAAAAAGTTTCAAA
AATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCC
ACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGACATAGTGCCCACCCG
CCCGCTCGTTTCATCGATCGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCGGACCGAAC
CGAGGGTTGCGGCAGCAGGATCGACAACACGCAGAGGGGGACCCGATGATCCCCGGCTTACCCAT
CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGT
TCATTACCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGACCGGAACGAGGGATACG
ACAGCACATGCTGGGCTCGAGCACGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCG
GAGCATCACCGGAGAACCTAACCGGCGGCATTGAGGTTCTAGCGATC
Found at i:17940615 original size:26 final size:26
Alignment explanation
Indices: 17940579--17940631 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17940569 GTTGACTTAG
17940579 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17940605 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17940631 G
1 G
17940632 ATCAGATTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17942603 original size:907 final size:902
Alignment explanation
Indices: 17939820--17944368 Score: 5640
Period size: 899 Copynumber: 5.1 Consensus size: 902
17939810 ACCAGGGCAC
* * * * *
17939820 CATCGCAGGAGAACCTGACCGACGGCATTGAGGTTCCGGTGATCGGGGGGGTCGGGTGGTGTGCA
1 CATCGCAGGAGAACCTGACCGACGGCATTGGGGTTCTGATGATCGGGGGGGCCGGG-GGTGTGCG
*
17939885 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTTTATTGGCCCCCTATCCCTCATCAAACCT
65 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* * *
17939950 TGGGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAA
130 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* * * *
17940015 GTGTCTAAAATGAGGACACGTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCT
195 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* **
17940080 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCTAGTTTGGGGCCAAAAAAC
260 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* * * * *
17940145 CTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATTGTTAAGAATAGAAAA
325 CTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAA
* * *
17940210 TGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTGAAGGGATCATTGTATGAATTTACAAGCCA
390 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
** * * *
17940275 TAAAAATGGCATTGGCACACAGAAATATAAAGATGCGCCTAAACCCACCTACCACTCTATCGATC
455 T-AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * *
17940340 CACGGCTTGCGCATCCCATCTCTCTGGCTGACGTAGTGCCT--GCCCGCCAT-CCCGCCCGCTCA
519 CACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTCCGCCCGCC-TGCCCGCCCGCTCG
* * ** * *
17940402 TTTCGTCGGTTGGCTTAGGCATATGAAGTTCATTCCCAGTCTAAGATCAAACC-GAATCGAGGAT
583 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCCGACCAGACT-GAGGGT
* * * ** * * * *
17940466 TGCGGCAGCAGGATCGGCAGCACGCAG-AGTGGGACCCGACCGATCGTCGGCTTGTGCATCTCAC
647 TGCGGCAGCAGGATCAGCAGCATG-AGAAG-GGGACCCGATCGATCCCCGACTTGCGCATCCCGC
* * * * *
17940530 CCCTCTGACAGGCTGAGCACCTGCACGATCGTTTCTTGGGTTGACTTAGGCATACGGAGTTCATT
710 CCCTCTGGCCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
* * * * *
17940595 CCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGATTAGACTGAGGGTTGTGGCAGC
775 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGACAGC
* * **
17940660 ACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCAT--------
840 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAG
* * *
17940715 CA-C-C-GGAGAACCTGACCGGCGGTATTGGGGTTCTGACGATC------G--GGGGGTGTGCGC
1 CATCGCAGGAGAACCTGACCGACGGCATTGGGGTTCTGATGATCGGGGGGGCCGGGGGTGTGCGC
* *
17940769 ACATGATGT-CTGATGGGTCCTAGTACTTGGCCCTTATATTGGCGCCCC-ATCCCTCATCAAACC
66 ACATGATGTGC-GATGGGTGCTGGTACTTGGCCCTTATATTGGC-CCCCTATCCCTCATCAAACC
*
17940832 TCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
129 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * *
17940897 AGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCGTGTAAACTTCGAGTTTTTAGC
194 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* *
17940962 TGAATTTTTTTGTTCATACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
259 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * *
17941027 CCTTTCGAAAAAATTTTAAAAAATCCCTAACGGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
324 CCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAA
*
17941092 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCC
389 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* * *
17941157 ATAAAAAGGCATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCGCCCTATCGATC
454 ATAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * * * * * *
17941222 C-CTGGCTTGTGCATCCTGTCTCTCTAGTCGGCGTAGT-TC-CCGCCCGCCCGCCTGCCCGCTCG
519 CAC-GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTCCGCCCGCCTGCCCGCCCGCTCG
* * * **
17941284 TTTCGTCGGTTGGCTTAGGCATACGAAATTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTT
583 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCCGACCAGACTGAGGGTT
* * * * * * *
17941349 GCGGCGGTAGGATCAGCAGCATGCGGAGGGGCACCCGATCGATCCCC-ATTTTGCGTATCTCGCC
648 GCGGCAGCAGGATCAGCAGCATGAGAAGGGG-ACCCGATCGATCCCCGA-CTTGCGCATCCCGCC
* ** * * *
17941413 CCTCTGGCCGACTGAATGCCTGCACGCTTGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATTC
711 CCTCTGGCCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
* * *
17941478 CCAGTCTAAGCATGCGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGATAGCA
776 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGACAGCA
* * * *
17941543 CATCCTGGGCTCGGGTATGTGCTGGTGCCGCATTTTTCTTTG-CTGGGGCACCATCACCGGAG
841 CATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTC-GGGGCACCATCACCGGAG
* * *
17941605 CATCGTAGGAGAACCTGACCGACGGCATTGAGGTT-TCGATGATCGGGGGGACCGGGGGGTGTGC
1 CATCGCAGGAGAACCTGACCGACGGCATTGGGGTTCT-GATGATCGGGGGGGCC-GGGGGTGTGC
17941669 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
64 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* *
17941734 TCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAA
129 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * *
17941799 AGTGTCTGAAATGGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACCTCGAGTTTTTAGT
194 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* *
17941864 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGACAAAACT
259 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * * *
17941929 CCTTTTGAAAAAATTTTAAAAAACCCCGAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAA
324 CCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAA
* * **
17941994 GCGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTGAGGGACCATTGTATGAATTTACAAGGA
389 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
*
17942059 ATAGAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
454 ATA-AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
*
17942124 CCACGGCTTGCGCATCCCGTCCCTCTGGCCGACGTAGTGCCTGCGCGCCCGCCTGCCCGCCCGCT
518 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCT-C-CGCCCGCCTGCCCGCCCGCT
* * ** **
17942189 CGTTTCGTCGGTTGGCTTAGGAATACGGAGTTCATTCCTAGTCTAAGATTGGACTGGACTGAGGG
581 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCCGACCAGACTGAGGG
* * * * *
17942254 TTGCAGCAGTAGGATCAGCAGCATGTAGAAGAGGACCCGATCGATCCCCGGCTTGCACATCCCGC
646 TTGCGGCAGCAGGATCAGCAGCATG-AGAAGGGGACCCGATCGATCCCCGACTTGCGCATCCCGC
* * *
17942319 CCCTCTGGCCGGCTGAGCACCTGCACGCTCATTTCGTGTGTTGACTTAGGCATACGGAGTTCATT
710 CCCTCTGGCCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
* * * *
17942384 CCCAGTCTAAGCGTATGGAGTTCATTCCCAGTCTAAGATCATACCAGACCGAGGGTTGCGACAGC
775 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGACAGC
* ** *
17942449 ACATACTGGGCTCGGGCATGTGCTGGTGCTATTTTTTTCTTCGTCGGGGCACCATCACCGGAG
840 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAG
* * * *
17942512 CATCACAGGAGAACCTGACTGACGGCATTGGGGTTCTGATGATCGGGGGGACCGGGGGCTGTGCA
1 CATCGCAGGAGAACCTGACCGACGGCATTGGGGTTCTGATGATCGGGGGGGCCGGGGG-TGTGCG
* * *
17942577 CACATGATGTGCAATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCTTCAAACCT
65 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* * **
17942642 CGAGAACTCACTCCCCCTTAAAGAGCTTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCCCTAAA
130 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* * *
17942707 ATGTTTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
195 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* * * *
17942772 GAATTATTTTGTGCAAGCCAACAAAAATACAAGGATCACAT-T--TAAGTTTGGGGCCAAAACTC
260 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
*
17942834 CTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAA
325 CTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAA
* *
17942899 CGAGTTGTCTTCCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
390 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* *
17942964 TAAAATGGCATTGGCATGTAGAAATATGAAGACGTGCCTAAACCCACCTACCACCCTATCGATCC
455 TAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * *
17943029 ACGGCTTGTGCATCCCGTCTCTCTGGCCGGCGTAGT-AC-CCGCCTGCCTGCCCGCCCGCTCGTT
520 ACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTCCGCCCGCCTGCCCGCCCGCTCGTT
** * * *
17943092 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGGATAAGATCCAACCAGACCGAGGGTTGT
585 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCCGACCAGACTGAGGGTTGC
* * * * *
17943157 GGCAGCAGGATCGGCAGCACAT-AGAGGGGGACTCGGTCGATCCCCGACTTGCGCATCCCGCCCT
650 GGCAGCAGGATCAGCAG--CATGAGAAGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCC
* * * * **
17943221 TCTGGCCGGTTGAGCGCCCGCACACTCGTTTTGTGGGTTGACTTAGTTATACGGAGTTCATTCCC
713 TCTGGCCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
* ** * *
17943286 AGTCTAAGCATACGGAGTTCGTTCCCAGTAGAAGATCAGACTTGACCGAGGGTTACGACAGCACA
778 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGACAGCACA
* * ***
17943351 TGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTACTTC-ACTGGGGCACCATTGTCGGAG
843 TGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTC-GGGGCACCATCACCGGAG
* * * *
17943411 CATCGCCA-GAGAACCTGACCGGCGGCATTGGGATTCCGACGATCGGGGGGGCCAGGGGGTGTGC
1 CATCG-CAGGAGAACCTGACCGACGGCATTGGGGTTCTGATGATCGGGGGGGCC-GGGGGTGTGC
* ** * *
17943475 GCACATGATGTCCGATGGGTGCTCATACTTGGCCCTTATATTGGCCCCCTATCCCTCTTCAAACT
64 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * * * *
17943540 TTGAGAAATCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTACCAGTAGCCATTGA
129 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
*
17943605 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGC
194 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * *
17943670 TGAATTTTTTTGTGCATGCCAACAAAAATAAAAGGATCACTCGTTTA-CAAGTTTAGGGCCAAAA
259 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA--CGTCTACCAAGTTTGGGGCCAAAA
* * * * *
17943734 C-CCCTTCCAAAAAATTTGAAAAAATCCCGAA-CGC-CAAAGTTTC-AAAATTATGAAAAATAGA
322 CTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGA
* * *
17943795 AAACGAGTCGTC-TGCCATTGAAACCTC-CGTTGAA-GCATAA-GGACCATGGTCATG-A-TTAC
387 AAACGAGTCGTCTTGCCA-TGAAACTTCACG-TGAAGGCTTAAGGGACCATTGT-ATGAATTTAC
* *
17943854 AAGCCATAAAACATGGCA-TGGCGTGCAAAAATATGAAGATGTGGCCGTAAACCACACCTACCAC
449 AAGCCAT-AAA-ATGGCATTGGCATGCAGAAATATGAAGATGT-GCC-TAAACC-CACCTACCAC
* * * * * *
17943918 CGTATCGATCCACGGCTTGCGGCATTCCGTCTTTCTGACCGA-GTAGTG---CCGCTCGCCCG-C
509 CCTATCGATCCACGGCTTGC-GCATCCCGTCTCTCTGGCCGACGTAGTGCCTCCGCCCGCCTGCC
* * * * * * * *
17943978 CGCCCGTTCGTTGCATCGATTAGC-TA-GCATTACAGAGATTCATTCCCA-ACTCAAGGATACGA
573 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA-TACGGAG-TTCATTCCCAGTCT-AA-GATCCGA
* * * * *
17944040 CCGGA-TCGAGGGTT-C-GTAGCAGGTTC-GACAGGCATGCGAA-GGGACTCGATCGATCCCCGA
634 CCAGACT-GAGGGTTGCGGCAGCAGGATCAG-CA-GCATGAGAAGGGGACCCGATCGATCCCCGA
* * * * * * *
17944100 CTCGTGCATCCCGCCCCTCTTGCCGGTGTGAGCG-C-GC-CGTATTTGTTTTCATTTGGGTTGAC
696 CTTGCGCATCCCGCCCCTCTGGCCGG-CTGAGCGCCTGCACG--CTCG-TTTC--GTGGGTTGAC
* * * *
17944162 TTAGGCATACGGAGTTCGTTCCCAGTCTAAGCATACAGAGTTCATTTCCAGTCTAAGATCAGACC
755 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT
* * * * * * *
17944227 AGATCGAGGGTTGTGGCAGCACATGTTCGGCTCGGGCTTGTGCTGGTGCTGTATTTTTCTTCGTC
820 AGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTC
* * *
17944292 GGGACACCATCGCCAGAG
885 GGGGCACCATCACCGGAG
* *
17944310 CATCGTCA-GAGAACCTAACC-AGCGGCATTGGGGTT-TCGGTGATCGGGGGGGCCAGGGGG
1 CATCG-CAGGAGAACCTGACCGA-CGGCATTGGGGTTCT-GATGATCGGGGGGGCC-GGGGG
17944369 GGTGTCCCTA
Statistics
Matches: 3178, Mismatches: 395, Indels: 158
0.85 0.11 0.04
Matches are distributed among these distances:
881 7 0.00
882 357 0.11
883 363 0.11
884 7 0.00
886 1 0.00
890 2 0.00
891 1 0.00
892 32 0.01
893 32 0.01
894 2 0.00
895 4 0.00
896 62 0.02
897 64 0.02
898 57 0.02
899 797 0.25
900 50 0.02
901 29 0.01
902 399 0.13
903 197 0.06
904 141 0.04
906 7 0.00
907 560 0.18
908 7 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (902 bp):
CATCGCAGGAGAACCTGACCGACGGCATTGGGGTTCTGATGATCGGGGGGGCCGGGGGTGTGCGC
ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
TTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAAC
GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
CGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTCCGCCCGCCTGCCCGCCCGCTCGTTT
CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCCGACCAGACTGAGGGTTGCG
GCAGCAGGATCAGCAGCATGAGAAGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCT
GGCCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGACAGCACATGC
TGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAG
Found at i:17944202 original size:26 final size:26
Alignment explanation
Indices: 17944166--17944218 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17944156 GTTGACTTAG
* *
17944166 GCATACGGAGTTCGTTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
17944192 GCATACAGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17944218 G
1 G
17944219 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17945575 original size:26 final size:26
Alignment explanation
Indices: 17945539--17945591 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17945529 GTTGACTTAG
*
17945539 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCGCAGTCTAA
*
17945565 GCATATGGAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCATTCGCAGTCTAA
17945591 G
1 G
17945592 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCGCAGTCTAA
Found at i:17945688 original size:11 final size:11
Alignment explanation
Indices: 17945672--17945704 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
17945662 GTCGGGGCAC
17945672 CATCGCCAGAG
1 CATCGCCAGAG
17945683 CATCGCCAGAG
1 CATCGCCAGAG
17945694 CATCGCCAGAG
1 CATCGCCAGAG
17945705 AATCTAACCG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.27, C:0.36, G:0.27, T:0.09
Consensus pattern (11 bp):
CATCGCCAGAG
Found at i:17950246 original size:26 final size:26
Alignment explanation
Indices: 17950210--17950262 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17950200 ATTGACTTAG
* *
17950210 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17950236 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
17950262 G
1 G
17950263 ATCCGACTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17950446 original size:26 final size:26
Alignment explanation
Indices: 17950394--17950446 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17950384 GTTGACTTAG
* *
17950394 GCATACGGAGTTCATATCTAGTCTAA
1 GCATACGGAGTTCATATCCAATCTAA
* *
17950420 GCATACGGAGTTCATTTCCAATGTAA
1 GCATACGGAGTTCATATCCAATCTAA
17950446 G
1 G
17950447 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATATCCAATCTAA
Found at i:17952944 original size:26 final size:26
Alignment explanation
Indices: 17952908--17952960 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17952898 GTTGACTTAG
*
17952908 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17952934 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17952960 G
1 G
17952961 ATCAGATTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17953819 original size:26 final size:26
Alignment explanation
Indices: 17953783--17953835 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17953773 GTTGACTTAG
17953783 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17953809 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17953835 G
1 G
17953836 ATCAGACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17954224 original size:895 final size:895
Alignment explanation
Indices: 17952153--17956701 Score: 5640
Period size: 895 Copynumber: 5.1 Consensus size: 895
17952143 ATCAGGGCAC
* * * *
17952153 CATCGCAGGAGAACCTGACCGACGGCATTGGGGTTCCGGTGATCGGGGGGGTCAGGTGGTGTGCA
1 CATCGCA-GAGAACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGGGTCGGGGGGTGTGCG
* *
17952218 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTTTATTGGCCCCCTATCCCTCATCAAACCT
65 CACATGATGTGCGATGGGTGCTCGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* * * *
17952283 TGGGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAA
130 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAA
* * * *
17952348 GTGTCTAAAATGAGGACACATGTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
195 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* **
17952413 GAATTTTTTTGTCCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAAAC
260 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTC
* * * * * *
17952478 CTTCCGAAAAAATTTTAAAAAATCCCAAACAGTAAAAAGTTTCAAAAATCATTAAGAATAGAAAA
325 CTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATTATGAAAAATAGAAAA
* *
17952543 TGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTGAAGGGACCATTGTATGAATTTACAAGCCA
390 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
*** * * *
17952608 TAAAAATGGCATTGGCACACAGAAATATTAAGATGTGCCTAAACCCACCTACCACTCTATCAATC
455 TAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
** * * * * *
17952673 CACGGCTTGCGCATCCCATCTCTCTGGTTGACGTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTC
520 CACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGT-CTC-CCCGCTCGCCCGATCGTTTCGTC
* ** * * * *
17952738 GGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGGACC-GAATCAAGGGTTG-CGAT
583 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGTAG-C
* * ** * ** * * *
17952801 AGCAGGATCGGCAACACACAGAGTGGGACCC-AGTCGATCGTCGGCTTGTGCATCTCACCCCTCT
646 AGCAGGATCAGCAGCATGCAAAG-GGGACCCGA-TCGATCCCCGGCTTGCGCATCTCGCCCTTCT
* * * *
17952865 GACCGGCTGAGCACCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGT
709 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * * *
17952930 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATTAAACTGAGGGTTGTGGCAGCACATGC
774 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCACATGC
* * *
17952995 TGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGC-CC--CATC--A-
839 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACTGGGGCACCATCACCGAAG
* * *
17953046 C--CG--GAGAACCTGACCGGCGGTATTGGGGTT-C--TGA-C-----GATCGGGGGGTGTGCGC
1 CATCGCAGAGAACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGGGTCGGGGGGTGTGCGC
* *
17953098 ACATGATGT-CTGATGGGTCCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
66 ACATGATGTGC-GATGGGTGCTCGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* *
17953162 CAAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAA
130 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAA
* * * * * *
17953227 GTGTCTGAAATAGGGATACGTTTTTCAAATGGTCACAAAATCGTGTAAACTTCGAGTTTTAAGCT
195 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* *
17953292 GAATTTTTTTGTGCATACCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATC
260 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTC
* * * * *
17953357 CTTTCGAAAAAATTTTAAAAAATGCCTAACGGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAA
325 CTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATTATGAAAAATAGAAAA
* * *
17953422 CGAGTCGTCTTGGCAAGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
390 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
*
17953487 TAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCGCCCTATCGATC
455 TAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * * * *
17953552 C-CTAGCTTGCGCATCCTATCTCTCTAGTCGGCGTAGT-T-CCCGCTTGCCCGATCGTTTCGTCT
520 CAC-GGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTCTCCCCGCTCGCCCGATCGTTTCGTCG
* * * * *
17953614 GTTGGCTTAGGCATACGAAATTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGT
584 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTAGCAGC
** *** * * *
17953679 AGGATCAGCAGCATGCGGAGGGGCACCCGATCGATCCCCATTTTACGTATCTCGCCCTTCTAGCC
649 AGGATCAGCAGCATGCAAAGGGG-ACCCGATCGATCCCCGGCTTGCGCATCTCGCCCTTCTGGCC
* ** * ** *
17953744 GACTGAATGCCTGCACGCTTATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
713 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
17953809 GCATGCGGAGTTCATTCCCAGTCTAAGATCAGACTAGATCGAGGGTTGCGGTAGCACATCCTGGG
778 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
17953874 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCTGGGGCACCATCACCGAAG
843 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACTGGGGCACCATCACCGAAG
* *
17953927 CATCGTCAGAGAACCTGACCGGCGGCATTGAGGTTCCGATGATCGGGGGGGTCGGGGGGTGTGCG
1 CATCG-CAGAGAACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGGGTCGGGGGGTGTGCG
*
17953992 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
65 CACATGATGTGCGATGGGTGCTCGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* *
17954057 CAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTATA
130 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAA
17954122 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
195 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
*
17954187 GAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTC
260 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTC
** * *
17954252 CTTTTGAAAAAATTTTAAAAAACCCCGAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAA
325 CTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATTATGAAAAATAGAAAA
*
17954317 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTGAGGGACCATTGTATGAATTTACAAGCCA
390 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* * *
17954382 TAGAAATAGCATTGGCATGCTA-AAATACGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
455 TAAAAATGGCATTGGCATG-TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * *
17954446 CCACGGCTTGCGCATCCCTTCTCTCTGACCGACGTAGTGCCTGCCCGCCTGCCCGCCCGCCCACC
519 CCACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGT--CT--CC-CC-GCTCGCCCG---A--
* * ** * * *
17954511 CGCTCATTTCGTCGGTTGGCTTAGGAATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACTG
573 ---TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCG
* * * * * * *
17954576 AGGGTTGCAGCAGTAGGATCAGCAGCATGTACAAGAGGACCCGACCGATCCCCGGCTTACACATC
635 AGGGTTGTAGCAGCAGGATCAGCAGCATGCA-AAGGGGACCCGATCGATCCCCGGCTTGCGCATC
* * *
17954641 -CTGCTCC-TCTGGCCGGCTGAGCACCCGCACGCTCATTTCGTGTGTTGACTTAGGCATACGGAG
699 TC-GC-CCTTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
* * * * * *
17954704 TTCATTGCCAGTCTAAGCGTATGGAGTTCATTGCCAGTCTAAGATCAGACCAGACCGAGGGTTAC
762 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGC
* * * *
17954769 GACAGCACATGCTAGGCTCGGGCATGTGCTGGTGCTGC-TTTTCTCTTC-GTCGGGGCACCATCA
827 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT-TCTTCACT-GGGGCACCATCA
*
17954832 CCGGAG
890 CCGAAG
* * * * * * *
17954838 CATCACCGGAGAACCTGACTGACGGCATTGGGGTTCTGACGATCGGGGGGGACCGGGGGCTGTGC
1 CATC-GCAGAGAACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGGG-TCGGGGGGTGTGC
* * * *
17954903 ACACATGATGTGCAATGGGTGCTCGTACATGGCCCTTATATTGGCCCCCTATCCCTCTTCAAACC
64 GCACATGATGTGCGATGGGTGCTCGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * * *
17954968 TCGAGAACTCACTCCCCCTTAAAGAGCTTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCCTTAA
129 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAA
* * * *
17955033 AATGTTTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTTGAGTTTTTAGC
194 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * **
17955098 TGAATTATTTTGTGCAAGCCAACAAAAATACAAGGATCACATCT---AAGTTTGGGGCCAAAACT
259 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACT
*
17955160 CCTTCCGAAAAAATTTCAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATTATGAAAAATAGAAA
324 CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATTATGAAAAATAGAAA
* *
17955225 ACGAGTCGTCTTCCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTCACAAGCC
389 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
*
17955290 AT-AAAATGGCATTGGCATGTAGAAATATGAAGACGTGCCTAAACCCACCTACCACCCTATCGAT
454 ATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* *
17955354 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTACTCACCCGTCTGCCCGCCCGTTCGTT
519 CCACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGT-CTC-CCCG-CT---CGCCCGATCGTT
* ** **
17955419 TCATAAGTTGGCTTAGGCATACGGAGTTCATTCCCAGGATAAGATCCA-ACCAGACCGAGGGTTG
578 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-CAGACCAGACCGAGGGTTG
* * * * *
17955483 TAGCAGCAGGATTGGCAGCA-CAT-AAAAGGGGACTCGATCGATCCCTGACTTGCGCATCTTGCC
642 TAGCAGCAGGA-T--CAGCAGCATGCAAAGGGGACCCGATCGATCCCCGGCTTGCGCATCTCGCC
* * ** *
17955546 CTTCTGGCCGGTTGAGCGCCCGCATGCTCGTTTTATGGGTTGACTTAGGCATACGGAGTTCGTTC
704 CTTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
** * * * *
17955611 CCAGTCTAAGCATACGGAGTTCATTCCCAGTAGAAGATCAGACTGGGCTGAGGGTTACGGCAGCA
769 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCA
* * * ** *
17955676 CATGCTGGGCTCAGGCATGTGCTGGTGCCGTATTTTTCTTCACTGGGGCACCATTATTGGAG
834 CATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACTGGGGCACCATCACCGAAG
* * * **
17955738 CATCACCAGAGAACCTGACCGACGGCATTGGGATTCCGATGATCAGGGGGG-CTAGGGGTGTGCG
1 CATC-GCAGAGAACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGGGTCGGGGGGTGTGCG
* * * *
17955802 CACATGATGTACGATGGGTGCTCATACTTGGCCCTTATATTGGCCCCCTATCCCTCTTCAAACTT
65 CACATGATGTGCGATGGGTGCTCGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* * *
17955867 TGAGAACTCACATCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTACCAGTAGCCATTAAA
130 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAA
*
17955932 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCT
195 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* * * *
17955997 GAATTTTTTTGTGCATGCCAACAAAAATAAAAGGATCACT-TTTACCAAGTTTAGGGCCAAAACC
260 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA-TGTCTACCAAGTTTGGGGCCAAAACT
* * * * *
17956061 CCTTCCAAAAAAATTTTAAAAAATCCCGAACCTCAAAAAGTTTCAAAATTTGTGAGAAATAGAAA
324 CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATTATGAAAAATAGAAA
* * *
17956126 ACGAGTCATCTTGCCATGAAACCTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
389 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* *
17956191 ATAAAAATGGCATTGGCTTGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
454 ATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * * *
17956256 CCATGGCTCGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCTCGCCCGCCCGCCCGTTCGTT
519 CCACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGT-----CTC-CCCGCTCGCCCGATCGTT
* * * * *
17956321 TCGTCGATTAGCTTAGGCATATGGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTT-T
578 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGT
* * * * * * * * *
17956385 CGTAGCAGGATCGGCAGCACGCGAAGGGGGACTCGGTCGATCCCCGGCTTGTGCATCCCG-CCTC
643 AGCAGCAGGATCAGCAGCATGC-AAAGGGGACCCGATCGATCCCCGGCTTGCGCATCTCGCCCT-
* * * * * *
17956449 TCTGGCCGGTTGAGCGTCCGCACGCTCGTTCCATAGGTTGACTTAGGCATACGGAGTTCGTTCCC
706 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
* * * ** *
17956514 AGTCTAAGCATATGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACA
771 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCACA
* * * *
17956579 TGTTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCA-TCGAGGCACCATCGCC-AGAG
836 TGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACT-GGGGCACCATCACCGA-AG
* * * * * * *
17956639 CATCGTCAGAGAACCTGATCGGCGACATTGGGGTTTCGACGATCAGGGGGGCCAGGGGGGTGT
1 CATCG-CAGAGAACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGGGTC-GGGGGGTGT
17956702 CCCTAAATCC
Statistics
Matches: 3171, Mismatches: 400, Indels: 160
0.85 0.11 0.04
Matches are distributed among these distances:
874 3 0.00
875 263 0.08
876 5 0.00
878 5 0.00
879 453 0.14
880 1 0.00
881 1 0.00
883 2 0.00
884 1 0.00
885 3 0.00
886 25 0.01
887 2 0.00
888 25 0.01
889 3 0.00
890 1 0.00
891 2 0.00
893 1 0.00
895 465 0.15
896 4 0.00
898 229 0.07
899 4 0.00
900 299 0.09
901 391 0.12
902 163 0.05
903 19 0.01
904 1 0.00
905 5 0.00
906 9 0.00
907 4 0.00
908 96 0.03
909 142 0.04
910 6 0.00
911 302 0.10
912 236 0.07
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (895 bp):
CATCGCAGAGAACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGGGTCGGGGGGTGTGCGC
ACATGATGTGCGATGGGTGCTCGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAG
TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCC
TTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATTATGAAAAATAGAAAAC
GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
AAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
ACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTCTCCCCGCTCGCCCGATCGTTTCGTCGGT
TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTAGCAGCAG
GATCAGCAGCATGCAAAGGGGACCCGATCGATCCCCGGCTTGCGCATCTCGCCCTTCTGGCCGGC
TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
TACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
GGGCATGTGCTGGTGCCGCATTTTTCTTCACTGGGGCACCATCACCGAAG
Found at i:17956524 original size:26 final size:26
Alignment explanation
Indices: 17956495--17956547 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17956485 GTTGACTTAG
* *
17956495 GCATACGGAGTTCGTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
17956521 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
17956547 G
1 G
17956548 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:17957007 original size:26 final size:26
Alignment explanation
Indices: 17956971--17957023 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17956961 GTTGACTTAG
* *
17956971 GCATACTGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
17956997 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
17957023 G
1 G
17957024 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:17957129 original size:476 final size:474
Alignment explanation
Indices: 17956229--17957177 Score: 1276
Period size: 476 Copynumber: 2.0 Consensus size: 474
17956219 TGAAGATGTG
* * * *
17956229 CCTAAACCCACCTACCACCCTATCGATCCATGGCTCGCGCATCCCGTCTCTCTGGCCGGCGTAGT
1 CCTAAACCCACCTACCACCCTATCAATCCACGGCTCACACATCCCGTCTCTCTGGCCGGCGTAGT
* * * * *
17956294 GCCCGCTCGCCCGCCCGCCCGTTCGTTTCGTCGATTAGCTTAGGCATATGGAGTTCATTCCCAAT
66 GCCCGCCCCCCCGCCCGCCCGCTCGTTTCATCGATTAGCTTAGGCATACGGAGTTCATTCCCAAT
* * * * *
17956359 CTAAGATCAGACCGGACCGAGGGTTTCGTAGCAGGATCGGCAGCACGCGAAGGGGGACTCGGTCG
131 ATAAGATCAGACCGGACCGAGGGTTTCGCAGCAGGATCAGCAGCACGCGAAGGGGGACCCGATCG
* * * * *
17956424 ATCCCCGGCTTGTGCATCCCGCCTCTCTGGCCGGTTGAGCGTCCGCACGCTCGTTCCATAGGTTG
196 ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGGTAAGCGCCCGCACGCTCGTTCCATAGGTTG
* * *
17956489 ACTTAGGCATACGGAGTTCGTTCCCAGTCTAAGCATATGGAGTTCATTCCCAATCTAAGATCGGA
261 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCACTCCCAATCTAAGATCGGA
* * * * ** **
17956554 CCGGACCGAGGGTTGTGGCAGCACATGTTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCA
326 CCAGACCGAGGGTTGCGACAACACATCCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCA
* * ** * * *
17956619 TCGAGGCACCATCGCCAGAGCATCGTCAGAGAACCTGATCGGC-GACATTGGGGTTTC-GACGAT
391 CCGAGGCACCATCCCCAGAGCATCACCAGAGAACCTAACCGGCAG-CATTGGGGTTCCAG-CGAT
17956682 CAGGGGGGCCAGGGGGGTGTC
454 CAGGGGGGCCAGGGGGGTGTC
* * *
17956703 CCTAAATCCACCTACCACCCTATCAATCCACGGCTTACACATCCCGTCTCTTTGGCCGGCGTAGT
1 CCTAAACCCACCTACCACCCTATCAATCCACGGCTCACACATCCCGTCTCTCTGGCCGGCGTAGT
* *
17956768 GCCCGCCCCCCCGCCCGTCCGCTCGTTTCATCGGTT-GACTTAGGCATACGGAGTTCATTCCCAA
66 GCCCGCCCCCCCGCCCGCCCGCTCGTTTCATCGATTAG-CTTAGGCATACGGAGTTCATTCCCAA
* * * *
17956832 TATAAGATCCGACTGGATCGAGGGTTGTGGCAGCAGGATCAGCAGCACG-GATAAGGGGGACCCG
130 TATAAGATCAGACCGGACCGAGGGTT-TCGCAGCAGGATCAGCAGCACGCG--AAGGGGGACCCG
* * * * *
17956896 ATCGATCCCCTGCTTGCGCATCCCGCCCCTCTGGTCGGGTAAGCGCCCGCACGCTCGTTTCGTGG
192 ATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGGTAAGCGCCCGCACGCTCGTTCCATAG
* *
17956961 GTTGACTTAGGCATACTGAGTTCATTCCCAGTCTAAGCATACGGAGTTCACTCCCAGTCTAAGAT
257 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCACTCCCAATCTAAGAT
*
17957026 CGGACCAGATCGAGGGTTGCGACAACACATCCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTC
322 CGGACCAGACCGAGGGTTGCGACAACACATCCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTC
* * * *
17957091 TTCACCGGGGCACCATCCCCGGAGCATCACCGGAGAACCTAACCGGCAGCATTGGGGTTCCAGTG
387 TTCACCGAGGCACCATCCCCAGAGCATCACCAGAGAACCTAACCGGCAGCATTGGGGTTCCAGCG
* *
17957156 ATCGGGGGGGCCGGGGGGGTGT
452 ATCAGGGGGGCCAGGGGGGTGT
17957178 GCACACATGA
Statistics
Matches: 409, Mismatches: 60, Indels: 10
0.85 0.13 0.02
Matches are distributed among these distances:
473 1 0.00
474 136 0.33
475 19 0.05
476 251 0.61
477 2 0.00
ACGTcount: A:0.18, C:0.31, G:0.29, T:0.22
Consensus pattern (474 bp):
CCTAAACCCACCTACCACCCTATCAATCCACGGCTCACACATCCCGTCTCTCTGGCCGGCGTAGT
GCCCGCCCCCCCGCCCGCCCGCTCGTTTCATCGATTAGCTTAGGCATACGGAGTTCATTCCCAAT
ATAAGATCAGACCGGACCGAGGGTTTCGCAGCAGGATCAGCAGCACGCGAAGGGGGACCCGATCG
ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGGTAAGCGCCCGCACGCTCGTTCCATAGGTTG
ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCACTCCCAATCTAAGATCGGA
CCAGACCGAGGGTTGCGACAACACATCCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCA
CCGAGGCACCATCCCCAGAGCATCACCAGAGAACCTAACCGGCAGCATTGGGGTTCCAGCGATCA
GGGGGGCCAGGGGGGTGTC
Found at i:17960588 original size:880 final size:877
Alignment explanation
Indices: 17958855--17961893 Score: 3741
Period size: 903 Copynumber: 3.4 Consensus size: 877
17958845 AAGCATACAG
* * * ** * *
17958855 AGTTTATT-CCAGTCTATGATCAGACCGGA-CGAAGGGTTGCGGTAGCACATGCTGGGCTCGAGC
1 AGTTCATTCCCAGTCTAAGATCGGACCGGACCG-AGGGTTGCGACAGCACATGATGGGCTCGGGC
* * ** * * ***
17958918 ATGTGTTGGTGTCGTATTTTTCTTCACCGGGGAACCATCGTCGGAGCATCGTTGGAGAACCTGAC
65 ATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCACCGGAGAACCTGAC
* * * *
17958983 CGACGGCATTAGGTTTTCGACGATCGAGGGGGCAGGGGGCGGGGTGTGCACACATGATGTGCGAT
130 CGACGGCATTGGGTTTCCGACGATCG-GGGGGCA--GGGAGGGGTGTGCGCACATGATGTGCGAT
* * *
17959048 GGGTGCTGGTACTTGGCCTTTATATTGGCCCCCAATCCCTCATCAAACCTCGAGAACTCACACCT
192 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
*
17959113 CTTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
257 CTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
** *
17959178 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTAAGTTTTTAGCTGAATTCTTTTGTGCA
322 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCA
* * * *** *
17959243 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTTGAAAAGATTT
387 TGCCAAAAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTT
* * *
17959308 TAAAAAATCTCGAACCAAAAAAAGTTTCGAAAATCATGAAAAATAAAAAACGAGTTGTCTTGCCA
452 TAAAAAATCTCGAACCGAAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTTGTCTTGCCA
* *
17959373 TGAAACTTCACGTGAAGGCTTAAGGGGCCACTGTATGAATTTACAAGCCATAAAAATGGCATTGG
517 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * * * * * *
17959438 CATGCAGAAATGTGAAGATGTACCTAAACCCACCTACCACCCAATCGACCCATGGCGTGCACATC
582 CACGTAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * * * * *
17959503 CCGTCTCCCTGGCCGGCGTACTGCCCGCCCG-CT-CATCAGCCAGCTCGTTTAGTTGATTGCCTT
647 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGC-CCA-CCCGCTCGTTTCGTAG-TTGGCTT
* ** * * *
17959566 AGGCATACGGAGTTCATTCTCAGTCTAAGATC-GAACCAGACCAAGGGTTACGGCAGCAGGATCG
709 AGGCATACGGAGTTCATCCT-AGTCTAAGATCAG-ACTGGACGAAGGGTTGCGGTAGCAGGATCG
* * * * * * *
17959630 ACAGCACGCAGAGGGTGACCCGGTCGATCCCC-AGCTTGCGGATCCCACCCTTCTGGCCAGCTAA
772 ATAGCACGCAGAGGGGGACCCGATCGATCCCCGA-CTTGCGCATCCCGCCCCTCTGG-CAGCTGA
*
17959694 GTGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATAGA-A-
835 GTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAGATAC
* * * * *
17959735 AGTTCATTCCCAGTCAAAGATCGGATCGGACCGAGGGTTGCAACAGCATATGATGGGCTCAGGCA
1 AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGATGGGCTCGGGCA
* ** * *
17959800 TGTGCTGGTGTCGTATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATTGCCAGAGAACCTGATC
66 TGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCACCGGAGAACCTGACC
* * * **
17959865 GACGGTATTGGGATTCCGGCGATCGAGGGGGCAGGAGAGGGGTGTGCGTGCATGATGTGCGATGG
131 GACGGCATTGGGTTTCCGACGATCG-GGGGGCAGG-GAGGGGTGTGCGCACATGATGTGCGATGG
* *
17959930 GTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCT
194 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCT
*
17959995 TTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
259 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
*
17960060 ACTTTTTTCAAATGGTCACAAAAATCTTGCACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCAT
324 ACTTTTTTCAAATGGTCAC-AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCAT
17960125 GCCAAAAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTT
388 GCCAAAAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTT
** *
17960190 AAAAAATCTCGAACCGAAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGACGTCTTGTCAT
453 AAAAAATCTCGAACCGAAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTTGTCTTGCCAT
* *
17960255 GAAACTTCAGGTGAAGGCTTAA-AGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
518 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* *
17960319 ACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGTTCCACGGCTTGCGCATCC
583 ACGTAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* *
17960384 CGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCTGCCCACCCGCTCGTTTCGTCAGTTGGCTTAGG
648 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCACCCGCTCGTTTCGT-AGTTGGCTTAGG
* **
17960449 CATACGGAGTTCATACCTAGTCTAAGATCAGACTGGATGGGGGGTTGCGGTAGCAGGATCGATAG
712 CATACGGAGTTCAT-CCTAGTCTAAGATCAGACTGGACGAAGGGTTGCGGTAGCAGGATCGATAG
* ** *
17960514 CACGCAGAGGGGGACCCGATCGATCCCCGACTTCCTTATCCCGCCCCTCTGGCTAGCTGAGCGCC
776 CACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGC-AGCTGAGTGCC
*
17960579 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCC
840 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATA--GA--T-A----C
* *
17960626 AGTCTAAGCATATGGAGTTCATTCACAGTCTAAGATCGGACCGGACCGAGGGTTACGACAACACA
1 AGT-T---C------A-TTC---C-CAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACA
* * * *
17960691 TGCTGGGCTCGGGCATTTGCTGGTG-CTGCATTTTTCTTCGTCGGGGCACCATCG-CCAGAGTAT
51 TGATGGGCTCGGGCATGTGCTGGTGTC-GCATTTTTCTTCGTCGGGGCACCATCGTCGA-AGCAT
* *
17960754 CACCGGAGAACCTGACCGACGGCATTGGGGTTT-CGATGATCGGGGGG--GCCGAGGGGTGTGCG
114 CACCGGAGAACCTGACCGACGGCATT-GGGTTTCCGACGATCGGGGGGCAG-GGAGGGGTGTGCG
* * *
17960816 CACATGATGTACGATGGGTACTGGTACTTGGCCCTTATATTGGCCGCCTATCCCTCATCAAACCT
177 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
*
17960881 CGAGAACTCACACCCTTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
242 CGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
17960946 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAATCTTGTACACTTCGAGTTTTTAGC
307 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC-AAAATCTTGTACACTTCGAGTTTTTAGC
*
17961011 TGAATTGTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCGACAAAGTTTGGGGCCAAAACT
371 TGAATTGTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACT
* * * *
17961076 CCTTCCAAAAAAATTTTAAAAAATCTCAAACCGTAAAAGGTTTTAAAAATCGTG--AAATAAAAA
436 CCTTCCAAAAAAATTTTAAAAAATCTCGAACCGAAAAAAGTTTCAAAAATCGTGAAAAATAAAAA
17961139 ACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
501 ACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* * *
17961204 ATAAAAATGGCATTGGCACGTAAAAATATGAAGATGTCCCTAAACCCACCAACCACCCTATCGAT
566 ATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGAT
* * *
17961269 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGTCCC-CCCGCTTGT
631 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTG-CCCACCCGCTCGT
* *
17961333 TTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAAGGGTT
695 TTCGT-AGTTGGCTTAGGCATACGGAGTTCA-TCCTAGTCTAAGATCAGACTGGA-CGAAGGGTT
* * * *
17961398 GCGGTAGCAGGATCGGTAGCACGTAGAAGGGGACTCGA-CTGATCCCCGACTTGCGCATCCCGCC
757 GCGGTAGCAGGATCGATAGCACGCAGAGGGGGACCCGATC-GATCCCCGACTTGCGCATCCCGCC
* * * *
17961462 CCTCTGGCCGACTGAGTGCCCGCACGCTTGTTTTGCGGGTTGACTTAGGCAACGGAGTTCATTCC
821 CCTCTGGCAG-CTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTT-----A--G-G-------C
17961527 TAGTCTAAGCATAC
870 -A---T-AG-ATAC
* * * ** *
17961541 GGAGTTCATTCCCAGTCTAAGATCAGAGCGGATCGAGGGTTGCGGTAGCACATGACTGGGCTTGG
1 --AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGA-TGGGCTCGG
*
17961606 GCATGTGCTGGTGAT-GCATTTTTCTTCGTCAGGGG---CA-C--C-AA-CGT---CGGAGAACC
63 GCATGTGCTGGTG-TCGCATTTTTCTTCGTC-GGGGCACCATCGTCGAAGCATCACCGGAGAACC
* *
17961659 TGACC-AGCGACATTGGGGTTTCCGATGATCGGGGGGCCAGGG-GGGGTGTGCGCACATGATGTG
126 TGACCGA-CGGCATT-GGGTTTCCGACGATCGGGGGG-CAGGGAGGGGTGTGCGCACATGATGTG
*
17961722 CGATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
188 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
**
17961787 AACCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGTTATTAAAGTGTCTGAAA
253 -ACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
17961851 TGGGGGCACTTTTATCAAATGGTCACAAAATATTGTACACTTC
317 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
17961894 CCACCCCTCT
Statistics
Matches: 1887, Mismatches: 192, Indels: 146
0.85 0.09 0.07
Matches are distributed among these distances:
879 3 0.00
880 448 0.24
881 313 0.17
882 5 0.00
886 1 0.00
891 3 0.00
892 2 0.00
893 27 0.01
894 30 0.02
895 163 0.09
896 6 0.00
897 2 0.00
898 1 0.00
899 1 0.00
900 1 0.00
901 47 0.02
902 230 0.12
903 451 0.24
904 4 0.00
905 9 0.00
906 117 0.06
907 6 0.00
908 1 0.00
910 1 0.00
911 1 0.00
913 1 0.00
915 1 0.00
916 1 0.00
917 3 0.00
918 1 0.00
919 2 0.00
920 1 0.00
921 1 0.00
922 2 0.00
923 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (877 bp):
AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGATGGGCTCGGGCA
TGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCACCGGAGAACCTGACC
GACGGCATTGGGTTTCCGACGATCGGGGGGCAGGGAGGGGTGTGCGCACATGATGTGCGATGGGT
GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTT
AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCC
AAAAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAA
AAATCTCGAACCGAAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTTGTCTTGCCATGAA
ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
TAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
CTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCACCCGCTCGTTTCGTAGTTGGCTTAGGCATA
CGGAGTTCATCCTAGTCTAAGATCAGACTGGACGAAGGGTTGCGGTAGCAGGATCGATAGCACGC
AGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCAGCTGAGTGCCCGCACG
CTCGTTTCGTGGGTTGACTTAGGCATAGATAC
Found at i:17960637 original size:26 final size:26
Alignment explanation
Indices: 17960607--17960659 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17960597 GTTGACTTAG
*
17960607 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
*
17960633 GCATATGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
17960659 G
1 G
17960660 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:17962289 original size:448 final size:437
Alignment explanation
Indices: 17961455--17962337 Score: 1229
Period size: 448 Copynumber: 2.0 Consensus size: 437
17961445 GACTTGCGCA
* * * *
17961455 TCCCGCCCCTCTGGCCGACTGAGTGCCCGCACGCTTGTTTTGCGGGTTGACTTAGGCAACGGAGT
1 TCCCACCCCTCTGGCCGACTGAGCGCCCGCACGCTTGTTTCGCGCGTTGACTTAGGCAACGGAGT
* * * *
17961520 TCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAGCGGATCGAGGGTTGCG
66 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCGAAGATCAGACCAGATCGAGGGTTGCG
** * * **
17961585 GTAGCACATGACTGGGCTTGGGCATGTGCTGGTGATGCATTTTTCTTCGTCAGGGGCACCAACGT
131 ACAGCACATGACTGGGCTAGGGCATGTGCTGGTGACGCATTTTTCTTCGTCAGGGGCACCAACAC
* *
17961650 CGGAGAACCTGACCAGCGACATTGGGGTTTCCGATGATCGGGGGGCCAGGGGGGGTGTGCGCACA
196 CGGAGAACCTGACCAGCGACATTGGGGTTTCCGACGATCGGGGAGCCAGGGGGGGTGTGCGCACA
* *
17961715 TGATGTGCGATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
261 TGATGTGCGATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
**
17961780 AACTCACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGTTATTAAAGTGT
326 AACTCACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
*
17961845 CTGAAATGGGGGCACTTTTATCAAATGGTCACAAAATATTGTACACT
391 CTGAAATGGGGACACTTTTATCAAATGGTCACAAAATATTGTACACT
* * * *
17961892 TCCCACCCCTCTGGCCGGCTGAGCGCCCGTAGGCTTGTTTCGTGCGTTGACTTAGGCATACGGAG
1 TCCCACCCCTCTGGCCGACTGAGCGCCCGCACGCTTGTTTCGCGCGTTGACTTAGGCA-ACGGAG
* *
17961957 TTCATTCCCAGTGTAAGCATACGGAGTTCATTCCCAGTCGAAGATCGGACCAGA-CTGAGGGTTG
65 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCGAAGATCAGACCAGATC-GAGGGTTG
** * *
17962021 CGACAGCACATG-CTGGGCTCAGGG-ATGTGCTGGTTCCGTATTTTTCTTCG-CCGGGGCACCTT
129 CGACAGCACATGACTGGGCT-AGGGCATGTGCTGGTGACGCATTTTTCTTCGTCAGGGGCA----
* *
17962083 CGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGG-TTCCGACGATCAGGGGAGCC-GC
189 --CC--A--A-CACCGGAGAACCTGACCAGCGACATTGGGGTTTCCGACGATC-GGGGAGCCAG-
*
17962146 CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGCTACTTGGCCCTTATATTGGTCCCCTATC
245 -GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATC
* *
17962211 CCTCATCAAACCTCGAGAGCTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
309 CCTCATCAAACCTCGAGAACTCACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* *
17962276 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
374 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTATCAAATGGTCACAAAATATTGTACA
17962338 ATTCGAGTTT
Statistics
Matches: 391, Mismatches: 38, Indels: 23
0.87 0.08 0.05
Matches are distributed among these distances:
436 7 0.02
437 80 0.20
438 75 0.19
442 2 0.01
444 1 0.00
446 12 0.03
447 33 0.08
448 181 0.46
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.26
Consensus pattern (437 bp):
TCCCACCCCTCTGGCCGACTGAGCGCCCGCACGCTTGTTTCGCGCGTTGACTTAGGCAACGGAGT
TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCGAAGATCAGACCAGATCGAGGGTTGCG
ACAGCACATGACTGGGCTAGGGCATGTGCTGGTGACGCATTTTTCTTCGTCAGGGGCACCAACAC
CGGAGAACCTGACCAGCGACATTGGGGTTTCCGACGATCGGGGAGCCAGGGGGGGTGTGCGCACA
TGATGTGCGATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
AACTCACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
CTGAAATGGGGACACTTTTATCAAATGGTCACAAAATATTGTACACT
Found at i:17962884 original size:26 final size:26
Alignment explanation
Indices: 17962847--17962899 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17962837 GTTGACTTAG
17962847 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
17962873 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
17962899 G
1 G
17962900 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:17963552 original size:26 final size:26
Alignment explanation
Indices: 17963523--17963601 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
17963513 GTTGACTTAG
17963523 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17963549 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17963575 GCACACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17963601 G
1 G
17963602 ATCGGATCGG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17965205 original size:26 final size:26
Alignment explanation
Indices: 17965169--17965219 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17965159 TGACTTAGGG
*
17965169 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCACTCTAAGC
17965195 ATACGGAGTTCATTCCCACTCTAAG
1 ATACGGAGTTCATTCCCACTCTAAG
17965220 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCACTCTAAGC
Found at i:17966681 original size:26 final size:26
Alignment explanation
Indices: 17966652--17966704 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17966642 GTTGACTTAG
17966652 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17966678 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17966704 G
1 G
17966705 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17968462 original size:26 final size:26
Alignment explanation
Indices: 17968424--17968476 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17968414 GTTGATTGAG
*
17968424 GCATACGGGGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17968450 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17968476 G
1 G
17968477 ATCAGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17969355 original size:26 final size:26
Alignment explanation
Indices: 17969326--17969399 Score: 114
Period size: 25 Copynumber: 2.9 Consensus size: 26
17969316 GTTGACTTAG
*
17969326 GCATACGAAGTTCATTCCCAGTCAAA
1 GCATACGGAGTTCATTCCCAGTCAAA
*
17969352 GCATACGGAGTTCATT-CCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCAAA
*
17969377 GCATATGGAGTTCATTCCCAGTC
1 GCATACGGAGTTCATTCCCAGTC
17969400 TAAGATCAGA
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
25 23 0.52
26 21 0.48
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCAAA
Found at i:17969378 original size:25 final size:26
Alignment explanation
Indices: 17969326--17969403 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
17969316 GTTGACTTAG
* *
17969326 GCATACGAAGTTCATTCCCAGTCAAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17969352 GCATACGGAGTTCATT-CCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
17969377 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
17969403 G
1 G
17969404 ATCAGATCGA
Statistics
Matches: 48, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
25 23 0.48
26 25 0.52
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:17969719 original size:916 final size:921
Alignment explanation
Indices: 17968424--17970113 Score: 2619
Period size: 916 Copynumber: 1.8 Consensus size: 921
17968414 GTTGATTGAG
* * *
17968424 GCATACGGGGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGACTAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACGAGAC
* *
17968489 CGAGGGTTGCAGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGG
66 CGAGGGTTACAGCAGCACATGCTAGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGG
* * * *
17968554 CACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGTGGCATTAGGGTTCCGGTGATCGGGGGGG
131 CACCA-C-T----GCAT--CCGGAGAACCTGACCAGCGGCACTAGGGTTCCGGCGATCGGGGGGG
** **
17968619 CTGGGGGGTGTGTGCACATGATGTACAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
188 CCAGGGGGTGTGCACACATGATGTACAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
17968684 CCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGATTGCTGC
253 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAAATTTTACAGGATTGCTGC
*
17968749 CAGTAGCCATTAAAGTTTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCATGTACACT
318 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCATGTACACT
* *
17968814 TCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA-CAAAGT
383 TCAAGTTTTTAGCTGAATTTTTTTGCGCATGCCAAAAAAAATACAAGGATCACGTCTATC-AAGT
* *
17968878 TTGGGGCCAAAACTCCGTCCGAAAAAATTTCAAAAAATCTCGAA-CCTTAAAAAGTTTCAAAAAT
447 TTGGGGCCAAAAATCCGTCCGAAAAAATTTCAAAAAATCTC-AAGCCGTAAAAAGTTTCAAAAAT
* *
17968942 CGTGAAAAATAGAAAACGATTCATCTTTCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
511 CGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* * *
17969007 ATGAATTTGCAAGCCATAAAAATGGCATTGTCAAGCAGAAATATGAAGATGTACCTAAACCCACC
576 ATGAATTTACAAGCCATAAAAAAGGCATTGGCAAGCAGAAATATGAAGATGTACCTAAACCCACC
* * * *
17969072 TACCACCCTATTGATCCACTGCTTGCGCATCCCGTCTCTC-GGCCGGCAT-T-GTGCCCGCCCGT
641 GACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-G-ATGTAGTGCCCGCCCGC
* ** *
17969134 CCGCCCACCCGTTCATTTTTTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGG
704 CCGCCCACCCGCTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGG
17969199 ACCAGTCCAAGGGTTGCGACAGTAGGATCAGCAACACGCAAAAGGGGACCCGACCGATCCCCGAC
769 ACCAGTCCAAGGGTTGCGACAGTAGGATCAGCAACACGCAAAAGGGGACCCGACCGATCCCCGAC
17969264 TTGCGCATCCCGCCCCTCTGGCCGACTGGGTGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCA
834 TTGCGCATCCCGCCCCTCTGGCCGACTGGGTGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCA
17969329 TACGAAGTTCATTCCCAGTCAAA
899 TACGAAGTTCATTCCCAGTCAAA
*
17969352 GCATACGGAGTTCATT-CCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGA-A
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGAGA
*
17969415 CCGAGGGTTAC-GACAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCGTCGG
65 CCGAGGGTTACAG-CAGCACATGCTAGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCGTCGG
*
17969479 GGCACCA-T-CAT-CGGAGAACCTGACCAGCGGCACTGGGGTTCCGGCGATCGGGGGGGCCAGGG
129 GGCACCACTGCATCCGGAGAACCTGACCAGCGGCACTAGGGTTCCGGCGATCGGGGGGGCCAGGG
* *
17969541 GGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
194 GGTGTGCACACATGATGTACAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
*
17969606 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAAATTTTACAGGCTTGCTGCCAGTAG
259 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAAATTTTACAGGATTGCTGCCAGTAG
* * * *
17969671 CCATTAAAGTGTCTTAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
324 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCATGTACACTTCAAGT
* *
17969736 TTTTAGCTGAATTTTTTTGCGCATGCCAAAAAAAATGCAAGGATCACGTTTATCAAGTTTGGGGC
389 TTTTAGCTGAATTTTTTTGCGCATGCCAAAAAAAATACAAGGATCACGTCTATCAAGTTTGGGGC
* * * * *
17969801 TAAAAATCCTTTCGAAAAAATTTTAAAAAATGTCAAGCCGTAAAAAGTTTCAAAAATCGTGAAAA
454 CAAAAATCCGTCCGAAAAAATTTCAAAAAATCTCAAGCCGTAAAAAGTTTCAAAAATCGTGAAAA
* *
17969866 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACGATTGTATGAATTT
519 ATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * *
17969931 ACAAGCCATAAAAAAGTCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCGACCACCC
584 ACAAGCCATAAAAAAGGCATTGGCAAGCAGAAATATGAAGATGTACCTAAACCCACCGACCACCC
* * ** *
17969996 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGATGTAGTGCCTGCCTGCCCGTTCACCT
649 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGATGTAGTGCCCGCCCGCCCGCCCACCC
* *
17970061 GCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTTCCAGTCTAAGATC
714 GCTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATC
17970114 AGATCAGACT
Statistics
Matches: 693, Mismatches: 62, Indels: 25
0.89 0.08 0.03
Matches are distributed among these distances:
915 4 0.01
916 492 0.71
917 68 0.10
919 3 0.00
924 1 0.00
926 1 0.00
927 107 0.15
928 17 0.02
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.26
Consensus pattern (921 bp):
GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACGAGAC
CGAGGGTTACAGCAGCACATGCTAGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGG
CACCACTGCATCCGGAGAACCTGACCAGCGGCACTAGGGTTCCGGCGATCGGGGGGGCCAGGGGG
TGTGCACACATGATGTACAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAAATTTTACAGGATTGCTGCCAGTAGCC
ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCATGTACACTTCAAGTTT
TTAGCTGAATTTTTTTGCGCATGCCAAAAAAAATACAAGGATCACGTCTATCAAGTTTGGGGCCA
AAAATCCGTCCGAAAAAATTTCAAAAAATCTCAAGCCGTAAAAAGTTTCAAAAATCGTGAAAAAT
AGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
AAGCCATAAAAAAGGCATTGGCAAGCAGAAATATGAAGATGTACCTAAACCCACCGACCACCCTA
TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGATGTAGTGCCCGCCCGCCCGCCCACCCGC
TCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGTCCAAGG
GTTGCGACAGTAGGATCAGCAACACGCAAAAGGGGACCCGACCGATCCCCGACTTGCGCATCCCG
CCCCTCTGGCCGACTGGGTGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCAT
TCCCAGTCAAA
Found at i:17971727 original size:26 final size:26
Alignment explanation
Indices: 17971693--17971743 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17971683 TGAGTTAGGT
17971693 ATACAGAGTTCATTCCCAGTCTAAGC
1 ATACAGAGTTCATTCCCAGTCTAAGC
* *
17971719 ATACGGAGTTCATTCCTAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
17971744 ATCGGACCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:17971828 original size:23 final size:24
Alignment explanation
Indices: 17971793--17971844 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
17971783 TCGGGCATTG
* *
17971793 GGGTGTGCACACAT-TTGTGTGAT
1 GGGTGTACACACATGATGTGTGAT
*
17971816 GGGTGTACGCACATGATGTGTGAT
1 GGGTGTACACACATGATGTGTGAT
17971840 GGGTG
1 GGGTG
17971845 CTGGTACTTG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
23 12 0.48
24 13 0.52
ACGTcount: A:0.17, C:0.12, G:0.40, T:0.31
Consensus pattern (24 bp):
GGGTGTACACACATGATGTGTGAT
Found at i:17972556 original size:26 final size:26
Alignment explanation
Indices: 17972516--17972568 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17972506 GTTGACTTAG
*
17972516 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGGTCATTCCCAGTCTAA
17972542 GCATACGGAGGTCATTCCCAGTCTAA
1 GCATACGGAGGTCATTCCCAGTCTAA
17972568 G
1 G
17972569 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGGTCATTCCCAGTCTAA
Found at i:17975932 original size:26 final size:26
Alignment explanation
Indices: 17975903--17975955 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17975893 CCGGTCCGAT
17975903 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17975929 CTTAGACTGGGAATGTACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17975955 C
1 C
17975956 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17976857 original size:26 final size:26
Alignment explanation
Indices: 17976814--17976863 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
17976804 GATCTTAGAC
*
17976814 TGGGAATGAACTCTGTATGCCTAAAT
1 TGGGAATGAACTCTGTATCCCTAAAT
17976840 TGGGAATGAACT-TCGTATCCCTAA
1 TGGGAATGAACTCT-GTATCCCTAA
17976864 GTCAACCCAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (26 bp):
TGGGAATGAACTCTGTATCCCTAAAT
Found at i:17977737 original size:26 final size:26
Alignment explanation
Indices: 17977708--17977760 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17977698 CTGGTCCGAT
17977708 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17977734 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17977760 C
1 C
17977761 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17978143 original size:900 final size:902
Alignment explanation
Indices: 17975040--17988751 Score: 15425
Period size: 904 Copynumber: 15.2 Consensus size: 902
17975030 CCGGTCCGAT
* * *
17975040 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAACTAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * **
17975105 GGGCCAGAGGGGTGGGATGCGCAAGCC-AGGGATCGGTCGAGTCCCCCTCTGCATGCTGTCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGA-GGATCGATCGGGTCCCCCTCTGCGTGCTACCGATC
*** * *
17975169 CTGCTGTTGCAACCCTTGGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
130 CTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
17975234 ACCGACGAAATGAACGGCGGGCGGGCGGGCAGGCACTACGCCGACCAGAGAGACGAGATGCGCAA
195 ACCGACGAAACGAGCGGCGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * *
17975299 GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCTTATTTCTACATGCCAATGCCA
260 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
17975364 TTTTCT-TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTGCATGGCGAA-
325 TTTT-TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC-AAG
* *
17975427 ACGACTC-ATTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
388 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
*
17975491 TTCGGAAGGAGTTTT-GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
453 TTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * *
17975555 AAAAACTCAGCCAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATT
518 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * * *
17975620 TCAGACACATTAATGGCTATTGGCAGCAAACCTGTAAAGTCTCAAATGCTATTTAATGGGGTGTG
583 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
17975685 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA-CCATCGTAC
648 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * * * * * *
17975749 AACATGTGTGCACACCCCCCCGGCCCCCCCGATTGCCGAAACCCCAAAGTCGTCGATCAGG---T
713 ATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * * *
17975811 -------T-CTCCGGCGATGGTGCCTCGACGAAGAAAAATGCAGCACCAGCACATGCTCGAGCCC
777 CCGACGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* *
17975868 AGCATGTGCTGTCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
842 AGCATGTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * **
17975929 CTTAGACTGGGAATGTACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGATCAAT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
17975994 CGGCTAGAGGGGCGGGATGCGTAAGTCGAGGATCGATCGGGTCCCTCTCTGTGTGCTGCCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCC
* * * * *
17976059 TGCTACCGTAACCCTTGGTCTGATCTGATCTTAAACTGGGAATGAACTCCGTATGCCTAATCCAA
131 TGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * **
17976124 CCGACGAAACGAACGGGCGGGTGGGCGGGCGGGCACTACGCTGGCTAGAGAGATAGGATGCGCAA
196 CCGACGAAACGAGC-GGCGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * *
17976189 GCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTTCATGCCAATGCCA
260 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * * *
17976254 TTTTTATGCCCTGTAAATTCCTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCTTGGCAAGAC
325 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
17976319 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
390 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
* ** * * **
17976384 TGAAAGGAGTTTTCACCCCAAACTTGGTAGACATGATCCTTGTATTTATGTTGGTGTGCACAAAA
455 TGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * *
17976449 AAATCCAGCTAAAAACACGAAGTGTACAAGATTTTGGGACCATTTGAAAAAAGTGTCCCCATTTC
520 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
** * *
17976514 AGACACTTTAACAGCTGCTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
585 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
17976579 TTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAACTACCAGCACCCATCGCACAT
650 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* *
17976644 CATGTGCGCACACCCCCCCCGG-CCCCCCGAT-TTCCGGAACCCCAATGCCGTCGGTCAGGTTCT
715 CATGTGCGCACA--CCCCCCGGCCCCCCCGATCGT-CGGAACCCCAATGCCGCCGGTCAGGTTCT
* * * *
17976707 CCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAAATGCCGGAGCCC
777 CCGACGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * * ** * *
17976772 AGTATGTCCTACTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATG
842 AGCATGTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * * *
17976833 CCTAAATTGGGAATGAACTTCGTATCCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
17976898 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCC
* * * ** *
17976963 TACTACCGTAACCCTCAGT-TCGACCTGATCTTAGACTGGGAATGAACTCCGTATTCCTAAGCCA
131 TGCTACCGCAACCCTCGGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * ** * *
17977027 ACTGACGAAACGAGCAGGCGGGCGTGCGGGTGGGCACTATGCGGGCCAGAGAGACGGGATGCGCA
195 ACCGACGAAACGAGC-GGCGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* **
17977092 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGTGTGCCAATGCC
259 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
17977157 ATTTTTATGGCTTGTAAATTCATACAATAGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
324 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
17977222 CAACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
389 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
* * * *
17977287 TTGGAA-AAGTTTTGGTCCGAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAA
454 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
17977351 AAAATTCAGCTAAAAACTCGAAGTGTACAAGACTTTGTGACCATTTGAAAAAAGTATCCCCATTT
519 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
17977416 CAGACACTTTAACGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
584 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
17977481 GTTCTCGAGATTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACA
649 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
** * * * *
17977546 TCATGTGCGCACA-CCCCCGGCCCCCCCGATCGTCGGAACCTTAATTCCACCGATCAGGTTCCCC
714 TCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * * * * * * *
17977610 GGCGATGCTCCGGTGATGGTGCCTCGGTGAAGAAAAATACAGCACCGGCATATGCTCGAGCCCAG
779 GACGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* *
17977675 CATGTGCTTCCATAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
844 CATGTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
17977734 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACACATGGAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** * * *
17977799 CGGCCAGAGGGGTGGGATGCGCAAGCCGAGAATCGGCCGGGTCCCCCTCTACATGCTATCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCC
* * * * *
17977864 TGCTATCGCAACCC-CGGTCTGATCCGATCTTAGACTGGGAATGAACTCCATATGTCTAAGCCAA
131 TGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
17977928 CCGACGAAACGAGCGTGCGGGTGGGCTGGCAGGCACTACGCTGGCCAGAGAGACGGGATGCGCAA
196 CCGACGAAACGAGCG-GCGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
*
17977993 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCTGCATGCCAATGCCA
260 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
17978058 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGAC
325 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * * *
17978123 GAATCGTTTTCTATTTTTCATAATTTTTGAAACATTTT-GGAGTTCGGGATTTTTTAAAATTTTT
390 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACG-GTTCGAGATTTTTTAAAATTTTT
** * * * *
17978187 TTGGTTGGAGTTTTGGGCCCAAACTTGGTAGATGTGATCCTTGTAGTTTTATTGGCATGCACAAA
454 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
17978252 AGAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTAAAAAAAAGTGTCCCCATT
519 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT-GAAAAAAGTGTCCCCATT
* *
17978317 TCAGACACTTTAATGGCCACTGGCAGCAAACCTGTAAAATCTCAAATGCTCATTAAGGGGGTGTG
583 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * *
17978382 AGTTGTCAAGGTTTGATGAGTGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTAC
648 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
17978447 ATCATGTGCG-A-A------GACCCCCCCGATCGTCGAAACCCCAATGCTGTCGGTCAGGTTCTC
713 ATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * * * *
17978504 TGACGATGCTCCGGCGATGGTG-CCCGGTGAAGAAAAATACGGCACCAGCACATGCTCGGGCCCA
778 CGACGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * * * * * *
17978568 GTATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGATTGGGAATGATCTTCATATG
843 GCATGTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * * * *
17978628 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAATCGATGAAATGAGTGTACGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * * *
17978693 CGGCCAGCGAGACAGGATGCGCAAGTCGAGGATCGATCGGGTCCCGCTCTGCATGTTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCC
** * * *
17978758 TGCTACCATAACCCTCAGTCTGGTTTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
131 TGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
17978823 CCGACGAAACAAGCGTGCGGGTGGGCGGGCGGGCATTACGCCGGCCAGAGAGACGGGATGCGCAA
196 CCGACGAAACGAGCG-GCGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * *
17978888 G--GTGAGAATCGATTGGGTGGTAGGTTGGTTTAGGCACATCTTCTTATTTCGGCATGCCAATGC
260 GCCGTG-G-ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* *
17978951 CATATTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAATTTCATGGCAAG
323 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * ** * *
17979016 ATGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTT
388 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
* *
17979081 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATATTTGTTGGCATGCACAA
453 TTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* *
17979146 AAAAATTCAGCTAAAAACTCAAAGTGTACAA-ATTTTGCGACCATTT-AAATAAAGTGTCCCCAT
518 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA-AAAGTGTCCCCAT
*
17979209 TTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
582 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
*
17979274 GAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
647 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * ** ** * * * *
17979339 CATCATGTGTGCACATCCCTCCGGCAGCTGCAATCGTCGAAACCCCAATGCGGCCGGTCGGGTTC
712 CATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
* * **
17979404 TCCG-CGATGCTCCAGCGATGGTGCCCCGGTGATA-AAAAATGTAGCACCAGCACATGCCCGAGC
776 TCCGACGATGCTCCGGCGATGGTGCCCCGGCGA-AGAAAAATGCGGCACCAGCACATGCCCGAGC
** *
17979467 CCAGCATGTGCTGCCGTAA--CAC--TC--G---G---TT----T-GG--T---CT--G-AT-
840 CCAGCATGTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
17979504 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACTCATGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * **
17979569 CGGCCAAAGGGGCGGGATGCGCAAG-CTAGGGATCGATCGCGTCCCCCTCTGCGGGCTGTCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGA-GGATCGATCGGGTCCCCCTCTGCGTGCTACCGATC
* ** ** * * * * *
17979633 TTGCTGTCATAACCCAT-GGTCCGGTCTGATCTTAGACTGGGAATGAATTTCGTATGCTTAAGGC
130 CTGCTACCGCAACCC-TCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * *
17979697 AACCGATGAAACGA-----------GTGGGCAGGCACTATG--GAGCCAAAGAGACGAGATGCGC
194 AACCGACGAAACGAGCGGCGGGCGGGCGGGCAGGCACTACGCCG-GCCAGAGAGACGGGATGCGC
* * * *
17979749 AAGCCATAGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATAC
258 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* * *
17979814 CATTCTTATGGCTTGTAAATTCATAC-ATGGTCCCATAAGCCTTCACGTAAAGTTTCATGGCAAG
323 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * ***
17979878 ATGACTCGTTTTCTATTTTTCACGATTTGAAAAACTTTTTACGGTTC-AGGATTTTTTAAAATTT
388 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTT
* * *
17979942 CTTTGGAAGGAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGCATTTTTGTTGGCATGCACA
452 TTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
**
17980007 AAAAAATTTGGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
517 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
17980072 TTCAGGCACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAA-GGGGTGG
582 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT-G
* * * * * *
17980136 AGAGTTCTCCATGTTTAACGAGGGATAGGGGGCCAATATAAGGGCCAAGTATCAGCACCCATCGC
646 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * *
17980201 ACATCATGTGCGCATACCCCCAGG-CCCCCCGATCGTCAGAAACCCCAATGCCGCCGGTTAGGTT
711 ACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAGGTT
* * ** * * *** * *
17980265 CTCCGACGATGATCCGACGATGGTGCCCCGATGAAGAAAAAAGTGGCGTGAGTACAAGCCCGAGC
775 CTCCGACGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
** * ** * * * * * *
17980330 CCAGC-TGTGCAACCGCAATGCTCGATTTGGTCTGATCTTAGATTGGGAATGAACTTCGTACG
840 CCAGCATGTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
17980392 CTTAGACTGGGAATTAACTCTGTACGCCTAGGTCAACCCATGAAACGAGCGTGCGAGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * ** * *
17980457 CAGCCAGAGGGGCAGGATGCGCAAG-CTAGGGATCGATCGGGTCCTTCTCTACGTGCTATCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGA-GGATCGATCGGGTCCCCCTCTGCGTGCTACCGATC
* * * *
17980521 CTGCTACCGCAACCCTCAGTCTGGTCTAATCCTAGACTGGGAATGAACTCTGTATGCCTAAGCCA
130 CTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
17980586 A-CTAGCGAAATGA---GCGGGCGAGC--G--GGCACTACGTCGGCCAGAAAGACGGGATGCGCA
195 ACCGA-CGAAACGAGCGGCGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* *
17980643 AGCCGTGGATCGATAGGGTGGTA-GTCTGG-TTAGGTACAATCTTCATAACCTTTCTGCAATGCC
259 AGCCGTGGATCGATAGGGTGGTAGGT-GGGTTTAGGCAC-ATCTTCAT-A--TTTCTGC-ATGCC
*
17980706 AATG-CATTTTTATGGCTTCGTAAATTCATACAATGGGTCCCTTAAG-CTTCACGTGAA-CTTCA
318 AATGCCATTTTTATGGCTT-GTAAATTCATACAAT-GGTCCCTTAAGCCTTCACGTGAAGTTTCA
* ** * *
17980768 TGGCAAGACGACTCATTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTTG-G-TATTTTT
381 TGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGAT-TTTTT
* *
17980831 AAAATTTTTTCCT-GAAGAGAGTTTTGGCCCCAAACTTGGTAGACATGA-CCTTGTTTTTTTGTT
445 AAAATTTTTT--TGGAAG-GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
* *
17980894 GGC-T-AAGCAAAAAAATTCAGCT-AAAACTCGAAGTGTAACACGATTTCTTGTGACCATTTGAA
507 GGCATGCA-CAAAAAAATTCAGCTAAAAACTCGAAGTGT-ACAAGA-TT-TTGTGACCATTTGAA
* *
17980956 AAAAGTGTCCCCATTTCAGA-AC-TTAATGGCTACTAGCAGGCAAAACCTGTAATATCTC-AATG
568 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA-GC-AAACCTGTAAAATCTCAAATG
* *
17981018 CTCTTTAAGGGGTTGTGAGTTCTTGAGGTTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
631 CTCTTTAAGGGGGTGTGAGTTCTCGAGG-TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
** ** *
17981083 TACCAGCACCCATCGCACATCATGT--GCACA------AACCCCCATGATCGCCGGAACCCCAAT
695 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAAT
* * * * ** ** * * *
17981140 GCTGTCAGTCAGGTTCTCTGGTGATGCTCCGATGATCGTGCCCCGACGAAGAAAAATGTGGCACC
760 GCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACC
* * * * * * *
17981205 AGCGCATGCCCGAGCCCAGCATGTGCTGTCGCAACACTCAGT-TCGGTCTGATCTTAGATTGGGA
825 AGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCT-GGTCCGATCTTAGACTGGGA
17981269 ATGAACTCCGTATG
889 ATGAACTCCGTATG
* * * *
17981283 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCTACGAAATGAGCGTACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * * * *
17981348 CAGCCAGAGGGGTAGGATGCGCAAGTCGAGGATCGACCGGGTCACCCTCTACGTG-TAACCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCT-ACCGATC
* * * * **
17981412 CTGCTACCGCAACCCTTGATCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
130 CTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
17981477 ACCGACGAAACGA---GCGGGCGGGCGGGCGGGCACTGCGTCGGCCAGAGAGATGGGATGCGCAA
195 ACCGACGAAACGAGCGGCGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
17981539 GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTCCATGCCAATGCCA
260 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
17981604 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
325 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * ** ** *
17981669 AACTTGTTTTCTATTTTTCATAATTTTCAAAACTTTTTGGGGTTC-AGGATTTTTTAAAATTTCT
390 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTT
* * *
17981733 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTAATCCTTGTATTTTTGTTAGCATGCACAAA
454 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * * * *
17981798 AACATTCAGCTAAAAACTCAAAGTGAACAAGATTTTGTGACCATTTGAAAAAAATGTTCCCATTT
519 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
17981863 CAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTAAAATGCTCTTTAAGGGGGTGTGA
584 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
17981928 GTTCTCGAGGTTTGATGAGGGGTAGGGGGCCAACATAAGGGCCAAGTACCAGCACCCATCGCACA
649 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* *
17981993 TCATGTGCGCACACCCCCCCCGGCCCCCCTGAT-GTCGGAACCCCAATGTCGCCGGTCAGGTTCT
714 TCATGTGCGCACA--CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * ** * * * * *
17982057 CCAATGATGCTCCGTTGATGGT-ACCCGGTGAAGAAAAATACAGCACCAGCACATGGCCGAGCCC
777 CCGACGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* *** * *
17982121 AGCATGTGCTACCGTGACCCTCGGT-TCGGTTCGATCTTAGACTGGGAATGAACTTCGTATG
842 AGCATGTGCTGCCACAACCCTCGGTCT-GGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
17982182 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
17982247 CGACCAGAGGGGCGGGATGCGTAAGTCGGGGATCGATCGGGTCCTCCTCTGCGTGCTGCCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCC
* * * * * *
17982312 TGCTGCCGCAACCCTTGGTCTGATCCGATCTTAGACCGGGAATGAACACCGTATGCCTAAGCCAA
131 TGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
17982377 CCGACAAAACGAGCGGGCGGGCGGGCGGACGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
196 CCGACGAAACGAGC-GGCGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * *
17982442 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAAATCTTCATATTTATACCTGCCAATGCCA
260 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * *
17982507 TTTTTATGGCTTGTAAATTCATACAATGGTCTCTTAAGCCTTCACGTGAGGTTTCATGGCAAGAT
325 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
*
17982572 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
390 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
* * *
17982637 TGGAAGGTGTTTTGGCCCTAAACTTGGAAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
455 TGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
17982702 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTCACAAAAAGTGTCCTCATTT
520 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA-AAAAAGTGTCCCCATTT
* * * *
17982767 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTTAAATGCTCTTTGAGGAGGTGTAA
584 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
17982832 ATTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCACACA
649 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * *
17982897 TCATGTGCGCACACCCCTCCGACCCCCCCGATCGTCGGAACCCTAATGTCGCCGGTCAGGTTCTC
714 TCATGTGCGCACACCCC-CCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* *
17982962 CG--GTATTGCTCTGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGTGCC
778 CGACG-A-TGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* **
17983025 CAGCATGTGCTGCCATAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCACATG
841 CAGCATGTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
17983087 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCAGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * ** * * * *** *
17983152 CGGTCAGAGGGGCAGGATGCGTAAATCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGTTGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCC
* * *
17983217 TGCTACCGTAACCCTCGGTCCGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
17983282 CCGACGAAACGAGTGGCGGGCCGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
196 CCGACGAAACGAGCGGCGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * * * * * *
17983347 CTGTGGATCGATAGTGTGGTTGGTGGATTTAGGCACATCTTCATATTTCTACGTGCCAATGACAT
261 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
*
17983412 TTTTATGGCTTGTAAATTCGTACAATGG-CTCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
326 TTTTATGGCTTGTAAATTCATACAATGGTC-CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
17983476 GACTCGTTTTCTATTTTTCATGATTTTTGAAACATTTTACGGTTCGAGATTTTTTAAACTTTTTT
390 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
* * * *
17983541 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGTAGAAAA
455 TGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * * * *
17983606 AAATTCAGCTAAAAACTCGAAGTGTACAAGATATTCTGACCATTTCAAAAAAGTTTCCCTATTTC
520 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
17983671 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTATTTTAAGGGGGTGTGA
585 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT-CTTTAAGGGGGTGTGA
* *
17983736 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCAAT-GCAC
649 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC-ATCGCAC
* * * * * *
17983800 ATCATGTGCGGACACCCCCCGGCCCCCCCGATTGCCAGAACCCCAATGCCACCGGTTAGGTTCTC
713 ATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * * * * * *
17983865 TGACGATGCTGCGGTGATGGTGCCCCGGCAAAGAAAAATGCGGTACCGGCACATGCCCGAGCCTA
778 CGACGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* ** * *
17983930 GCATGTGCTGCCACAACCCTCAGTCCAGTCCGATCTTGGATTGGGAATGAACTCCGTATG
843 GCATGTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
17983990 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGAT-TGGGTGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG-TGCGGGCGCTCAG
* * ** * * *
17984054 TCGGCTAGAGGGGTTGGATGCGCAAGCCG-GGAATCGATCGAGTCCCCCTCTACGTGCTATCGAT
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGAGG-ATCGATCGGGTCCCCCTCTGCGTGCTACCGAT
* * * * *
17984118 CTTGCTACCGCAACCTTCAGTCTGGTCTAATCTTTGACTGGGAATGAACTCCGTATGCCTAAGCC
129 CCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* ** * * * *
17984183 AACCGATGAAATAAGCGGC--GCGGGTGGGCGGGCAC-ACCGCCAGCCAGAGAGATGGGATGCGC
194 AACCGACGAAACGAGCGGCGGGCGGGCGGGCAGGCACTA-CGCCGGCCAGAGAGACGGGATGCGC
***
17984245 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGC
258 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
*
17984310 CA-TTTTATGGCTTGTTAAATTCGTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
323 CATTTTTATGGCTTG-TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * * *
17984374 GACGACTCATTTTCTATTTTTCATAATTTTTGAAACATTTTACGGTTTGGGATTTTTTAAAATTT
387 GACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTT
* * ** * *
17984439 TTTCGGAAGGAGTTTTAGCCCTGAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCGTGCACA
452 TTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
*
17984504 AAAAAATTCAGCTAAAAACTCGAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
517 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* ** * * * *
17984569 TTTAGACACTTTAATATCAATTGGCAGCAAACCTGTAAAATCTCAAATGCTATTTAAGAGGGTGT
582 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
** * *
17984634 GAGATT-TCGAGGTTTGACAAGGGATAGGGGGCCAATATGAGGGCCAAGTCCCAGCACCCATCGC
647 GAG-TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * * * * *
17984698 ACATCATGTGCGCACACCCCCCAGTCACCCCGATCGTTGGAACCCCAATGCTGCTGGTTAGGTTC
711 ACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
* * * * * * * * **
17984763 TCCGACGATGCTCCGACGATCGTGCCCCGACAAAGAAAAATGTGGCTCCAGCACGTGTCTAAGCC
776 TCCGACGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * ** * * *
17984828 TAGGATGTGCTGCTGCAACCCTAGGTCTGGTGCGAACTTAGACTGGGAATGAACTCCGTATG
841 CAGCATGTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
17984890 CTTAGACTGGGAATGAACTCTGAATGCCTAGGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
17984955 CGGCCAGAGGGGTGGGATGCGCAAGCCGAGGATCGGTCGGGTCTCCCTCTGCGTGATGCCAATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCC
* * * * **
17985020 TGGTACCGCAAGCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCTGA
131 TGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
17985085 CCGACG-AACGA--AGTGAGCGGGC--G-A-GCACTACGACGGCCAGAGAGACAGGATGCGCAAG
196 CCGACGAAACGAGCGGCGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
** *
17985143 CCGTGGATCG--A------TA---GGGTTTAGGCACATCTTCATATTTCTGTGTGGCAATGCCAT
261 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
*
17985197 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAATATC
326 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA-C
* **
17985262 -ACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTCTG-GATTTTTTAAAATTTTT
390 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTC-GAGATTTTTTAAAATTTTT
* * *
17985325 TCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTGTTGTTGGCATGCACAAA
454 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
17985390 AAAATTCAGCTAAAAACTCGAAGTGTATAAGATTTCGTGACCATTTGAAAAAAGTGGGTGCACCA
519 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT--GT-C-CC-
** * * * * ** * *
17985455 GCA-CCCATCG-CACATCATGTGCGCACACCCTCCGGCA-C-CCCCGATCGTCAAAA-CCCCAAT
579 -CATTTCA--GACACTTTA-ATG-GC-TA--CT--GGCAGCAAACC--T-GT-AAAATCTCAAAT
** ** * ** * * *
17985515 G--C--T--GTCGGTCAG-GTTCTC-CGG--TGATGCTACGGCGAT-GGTGCCCCGAT-GAA-GA
630 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG--A-GG-GATAGG-GGGCCAATATAAGGG
** * * * ** *****
17985567 AAAATGTGACACCAGCACATGCCTGAGCCCAGCATC-TGCTGCCGTA-A-CCCTTGGTCTGGTTC
690 CCAA-GT---ACCAGCAC---CC--ATCGCA-CATCATG-TG-CGCACACCCCCCGG-CCCCCCC
* *** * * * * *
17985629 GATCTTAGACTAGAAATGAACTCTGTATGCTTAGACTGGGAATGAACTACGTATGCCTAAGTCAA
742 GATC---G--TCG----GAAC-CCCAATGC--CG-C-CGG--T---C-AGGT-T--CT---CCGA
* *** * * * **** **
17985694 CCAATGAAACGAGCGTGTGGTCACTCAGCCGGCCAGAGGGGTGGGATGC-GCAAGCCAG-GGATC
781 -CGATGCTCCG-GCG-ATGGT-GC-C--CCGG-C-GA--AGAAAAATGCGGC-A-CCAGCACAT-
** * * * * * * *
17985757 GGTC-AGGTCCC-CCTTTACGTGCTACC-GATCCTACTACCGTAACCCTCGGTCCGA--TTCGAT
832 GCCCGA-G-CCCAGC---ATGTGCTGCCACAACC--CT-CGGT----CT-GGTCCGATCTTAGA-
17985817 CTTAGACTGGGAATGAACTCCGTATG
883 C-T-G---GG-AATGAACTCCGTATG
* * *
17985843 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGAT-TGGGTGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG-TGCGGGCGCTCAG
* * * * * *
17985907 TCGGCTAGAGGGGTGGGATGCGCAAGCCG-GGAATCGATCGAGTCCCCCTCTACGTGCTATCGAT
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGAGG-ATCGATCGGGTCCCCCTCTGCGTGCTACCGAT
* * * * *
17985971 CTTGCTACCGCAACCTTCAGTCTGGTCTAATCTTTGACTGGGAATGAACTCCGTATGCCTAAGCC
129 CCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* ** * * *
17986036 AACCGATGAAATAAGCGGGCGGGTGGGCGGGCA--CAC--CGCCAGCCAGAGAGATGGGATGCGC
194 AACCGACGAAACGAGC-GGCGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * ***
17986097 AAGCCGTGGATCAATAGGGTGGTAGGTGGGCTTAGGCACATCTTCATATTTCTATGTGCCAATGC
258 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
*
17986162 CATTTTTATGGCTTGTAAATTCGTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
323 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * * *
17986227 ACGACTCATTTTCTATTTTTCATAATTTTTGAAACATTTTACGGTTTGGGATTTTTTAAAATTTT
388 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
* * ** * *
17986292 TTCGGAAGGAGTTTTAGCCCTGAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCGTGCACAA
453 TTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
*
17986357 AAAAATTCAGCTAAAAACTCGAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
518 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* ** * * * *
17986422 TTAGACACTTTAATATCAATTGGCAGCAAACCTGTAAAATCTCAAATGCTATTTAAGAGGGTGTG
583 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
** * *
17986487 AGATT-TCGAGGTTTGACAAGGGATAGGGGGCCAATATGAGGGCCAAGTCCCAGCACCCATCGCA
648 AG-TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * * * * *
17986551 CATCATGTGCGCACACCCCCCAGTCACCCCGATCGTTGGAACCCCAATGCTGCTGGTTAGGTTCT
712 CATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * * * * * * * ** *
17986616 CCGACGATGCTCCGACGATCGTGCCCCGACAAAGAAAAATGTGGCTCCAGCACGTGTCTAAGCCT
777 CCGACGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* ** * * *
17986681 AGGATGTGCTGCTGCAACCCTAGGTCTGGTGCGAACTTAGACTGGGAATGAACTCCGTATG
842 AGCATGTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * * *
17986742 CTTAGACTGGGAATGAACTCTGTATGCCTACGTCAACCCACGAAACAAGCATACGGGTGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * * ** * * *
17986807 CTTCCAAAGGGGTGGGAAGCGTGAGACGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCC
* * * * * *
17986872 TGCTGCTGCAACACTCGGTCTGGTCCGATCTTAGACTGGGAATTAACTTCGTATGCCTAAGCCAA
131 TGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
17986937 CCGATGAAAAAAGTGGGCGGGTGGGTGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
196 CCGACG---AAA-CGAGC-GGCGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGC
* * *
17987002 GCAAGCCATGGATCGATAGGGTGGTAGGTGTGTTTACGCACAAT-TTCATATTTCTGCATGCCAA
256 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC-ATCTTCATATTTCTGCATGCCAA
*
17987066 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCATTAAGCCTTCACGTGAAGTTTCATGGC
320 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * ** * ** * *
17987131 AAGACCACTCGTTTTCTATTTTTCACGATTTTCAAAATTTTTTGGGGTTCAAGATTTTTTTGAAA
385 AAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGA-TTTTTTAAAA
** * *
17987196 TTTTTTTGGAAGGAGTTTTGGCCCCAAACTTTCTTGACGTGATCCTTGTATTTTTATTGGCATGC
449 TTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
* *
17987261 ACAAAAAAATTCAGCTAAAAATTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
514 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
*
17987326 CATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGG
579 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
17987390 TGTGA-TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
644 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * *
17987454 GCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGCTGATCAGGT
709 GCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGT
** * * * * * * * *
17987519 TCTCCGGTGATGCTCTGACGATGGCGACCCGACGAAGAAAAATGCAGCACCAACACTTGCCCGAG
774 TCTCCGACGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* * **
17987584 CCCAGAATGTGCTGCCCCATTCCTCGGTTCT-GTCCGATCTTAGACTGGGAATGAACTCCGTATG
839 CCCAGCATGTGCTGCCACAACCCTCGG-TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
17987648 CTTAGACTGCGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
17987713 CGACCAGAGGGGCGAGATGCACAAGCCGGGGATC-AGTCGGGTCCCCCTCTGCGTGCTACCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGA-TCGGGTCCCCCTCTGCGTGCTACCGATC
* * * * * *
17987777 CTGCTGCCACAACCGTCGGATCCTGGTCCT-ATCTTAGACTAGAAATGAACTCTGTATGCCTAAG
130 CTGCTACCGCAACCCTCGG-T-CTGGT-CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * ** * * * *
17987841 CCAACCGACGAAAC-A--AGCGGACGGACGGGCAATCACTACGCCGGCTAAAGAGACAGGATGTG
192 CCAACCGACGAAACGAGCGGCGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCG
* * *
17987903 GAAGTCGTGGATCGATAGGGTGTTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
257 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
* *
17987968 CCATTTTTATTGCTTGTAAATTCATACAATGGTCCCTTAAACCTTCACGTGAAGTTTCATGGCAA
322 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * * *
17988033 GACGACTCGTTTTTTATTTTTCACG-GTTTTCAAACTTTTT-CGGTTCGGGATTTTTTAAAATTT
387 GACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTT
** *
17988096 TTTTGGAAGGAGTTTTTCCCCCAAACTTGGTAGCCGTGATCCTTGTATTTTTGTTGGCATGCACA
452 TTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* *
17988161 AAAAAATTCAGCTAACAACTCGAAGTGTACAAGATTTTGTTACCATTTGAAAAAAGTGTCCCCAT
517 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
*
17988226 TTCAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
582 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* *
17988291 GAGTTCTCGATGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACA
647 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * *
17988355 CATCATGGGCGCACACACCCCTCGG-CCCCCCGATCGCCGAAACCCCAA--CCGCCGGTCAGG-T
712 CATCATGTGCGCACAC-CCCC-CGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
***
17988416 -T----C--T-CT--GGCGATGGTGCCTTTGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
775 CTCCGACGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * * * * * * *
17988471 CTAGTATGTACTGCCACAACCCTTGGTCCT-ATCCGTTCTTAGAATGGGAATGAACTCTGTATG
840 CCAGCATGTGCTGCCACAACCCTCGGT-CTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
17988534 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCG-TCTAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC-AG
* * * * *
17988598 CCGGCCAGAGGGGCGGGATGCAG-ATGCCGGGGATCGACCGGGTCCCCCTCTGTGTGCCACCGAT
65 CCGGCCAGAGGGGCGGGATGC-GCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTACCGAT
* * ** * * ** *
17988662 CCAGCCATTG-TA--CTCAGTCTGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCC
129 CCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * *
17988724 AACCGGCAAAACGAACGGACGGACGGGC
194 AACCGACGAAACGAGCGG-CGGGCGGGC
17988752 AAGTTCTCCG
Statistics
Matches: 10935, Mismatches: 1522, Indels: 736
0.83 0.12 0.06
Matches are distributed among these distances:
861 8 0.00
862 234 0.02
863 300 0.03
864 18 0.00
865 1 0.00
866 1 0.00
868 1 0.00
871 1 0.00
874 2 0.00
875 2 0.00
876 169 0.02
877 3 0.00
878 1 0.00
879 2 0.00
880 3 0.00
881 50 0.00
882 2 0.00
883 4 0.00
884 256 0.02
885 28 0.00
886 209 0.02
887 8 0.00
888 177 0.02
889 185 0.02
890 270 0.02
891 483 0.04
892 376 0.03
893 305 0.03
894 256 0.02
895 532 0.05
896 89 0.01
897 323 0.03
898 230 0.02
899 545 0.05
900 931 0.09
901 760 0.07
902 243 0.02
903 986 0.09
904 1126 0.10
905 288 0.03
906 338 0.03
907 190 0.02
908 225 0.02
909 7 0.00
910 7 0.00
911 7 0.00
912 4 0.00
913 3 0.00
914 8 0.00
915 6 0.00
916 3 0.00
917 1 0.00
918 1 0.00
919 3 0.00
920 3 0.00
921 2 0.00
922 1 0.00
923 5 0.00
924 2 0.00
925 6 0.00
926 4 0.00
927 6 0.00
928 2 0.00
929 5 0.00
930 1 0.00
931 2 0.00
932 3 0.00
933 3 0.00
934 1 0.00
935 1 0.00
936 3 0.00
937 6 0.00
938 8 0.00
939 3 0.00
940 4 0.00
941 7 0.00
942 7 0.00
943 6 0.00
946 4 0.00
947 5 0.00
948 7 0.00
949 2 0.00
951 3 0.00
952 16 0.00
953 199 0.02
954 12 0.00
955 7 0.00
956 1 0.00
957 43 0.00
958 8 0.00
959 6 0.00
960 15 0.00
961 12 0.00
962 15 0.00
963 1 0.00
964 5 0.00
965 3 0.00
966 2 0.00
967 2 0.00
968 265 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (902 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCC
TGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGCGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTT
GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
ATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA
CGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
TGTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:17978653 original size:26 final size:26
Alignment explanation
Indices: 17978602--17978654 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
17978592 CCGGTCCGAT
* * *
17978602 CTTAGATTGGGAATGATCTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17978628 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17978654 C
1 C
17978655 CTAAGTCAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17980402 original size:26 final size:26
Alignment explanation
Indices: 17980366--17980418 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17980356 TTGGTCTGAT
*
17980366 CTTAGATTGGGAATGAACT-TCGTACG
1 CTTAGACTGGGAATGAACTCT-GTACG
*
17980392 CTTAGACTGGGAATTAACTCTGTACG
1 CTTAGACTGGGAATGAACTCTGTACG
17980418 C
1 C
17980419 CTAGGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTACG
Found at i:17981293 original size:26 final size:26
Alignment explanation
Indices: 17981257--17981309 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17981247 TCGGTCTGAT
* *
17981257 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
17981283 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
17981309 C
1 C
17981310 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17982185 original size:26 final size:26
Alignment explanation
Indices: 17982156--17982208 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17982146 TCGGTTCGAT
17982156 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
17982182 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
17982208 C
1 C
17982209 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:17984916 original size:26 final size:26
Alignment explanation
Indices: 17984864--17984916 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17984854 CTGGTGCGAA
*
17984864 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGAATG
*
17984890 CTTAGACTGGGAATGAACTCTGAATG
1 CTTAGACTGGGAATGAACTCCGAATG
17984916 C
1 C
17984917 CTAGGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGAATG
Found at i:17985661 original size:26 final size:26
Alignment explanation
Indices: 17985632--17985684 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17985622 CTGGTTCGAT
17985632 CTTAGACTAGAAATGAACT-CTGTATG
1 CTTAGACTAGAAATGAACTAC-GTATG
* *
17985658 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTAGAAATGAACTACGTATG
17985684 C
1 C
17985685 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGAAATGAACTACGTATG
Found at i:17985846 original size:26 final size:26
Alignment explanation
Indices: 17985817--17985869 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
17985807 CCGATTCGAT
17985817 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17985843 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17985869 C
1 C
17985870 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17985920 original size:185 final size:184
Alignment explanation
Indices: 17985608--17986028 Score: 544
Period size: 185 Copynumber: 2.3 Consensus size: 184
17985598 GCATCTGCTG
* * * *
17985608 CCGTAACCCTTGGTCTGGTTCGATCTTAGACTAGAAATGAACTCTGTATGCTTAGACTGGGAATG
1 CCGTAACCCTCGGTCT-GTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* *
17985673 AACTACGTATGCCTAAGTCAACCAATGAAACGAGCGTGTGGTCACTCAGCCGGCCAGAGGGGTGG
65 AACTACGTATGCCTAAGTCAACCAACGAAACAAGCGTGTGGTCACTCAGCCGGCCAGAGGGGTGG
* *
17985738 GATGCGCAAGCCAGGG-ATCGGTC-AGGTCCCCCTTTACGTGCTACCGATCCTACTA
130 GATGCGCAAGCC-GGGAATCGATCGA-GTCCCCCTCTACGTGCTACCGATCCTACTA
*
17985793 CCGTAACCCTCGGTCCGATTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
1 CCGTAACCCTCGGTCTG-TTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* * * * *
17985858 AACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGAT-TGGGT-GCTCAGTCGGCTAGAGGGGT
65 AACTACGTATGCCTAAGTCAACCAACGAAACAAGCG-TGT-GGTCACTCAGCCGGCCAGAGGGGT
* * *
17985921 GGGATGCGCAAGCCGGGAATCGATCGAGTCCCCCTCTACGTGCTATCGATCTTGCTA
128 GGGATGCGCAAGCCGGGAATCGATCGAGTCCCCCTCTACGTGCTACCGATCCTACTA
* * * * * *
17985978 CCGCAACCTTCAGTCTGGTCTAATCTTTGACTGGGAATGAACTCCGTATGC
1 CCGTAACCCTCGGTCTGTTC-GATCTTAGACTGGGAATGAACTCCGTATGC
17986029 CTAAGCCAAC
Statistics
Matches: 206, Mismatches: 24, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
184 6 0.03
185 195 0.95
186 5 0.02
ACGTcount: A:0.24, C:0.26, G:0.27, T:0.24
Consensus pattern (184 bp):
CCGTAACCCTCGGTCTGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
ACTACGTATGCCTAAGTCAACCAACGAAACAAGCGTGTGGTCACTCAGCCGGCCAGAGGGGTGGG
ATGCGCAAGCCGGGAATCGATCGAGTCCCCCTCTACGTGCTACCGATCCTACTA
Found at i:17986752 original size:26 final size:26
Alignment explanation
Indices: 17986716--17986768 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17986706 CTGGTGCGAA
17986716 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17986742 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17986768 C
1 C
17986769 CTACGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17987651 original size:26 final size:26
Alignment explanation
Indices: 17987622--17987674 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17987612 TCTGTCCGAT
*
17987622 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
17987648 CTTAGACTGCGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
17987674 C
1 C
17987675 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCGTATG
Found at i:17988544 original size:26 final size:26
Alignment explanation
Indices: 17988508--17988560 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17988498 CCTATCCGTT
*
17988508 CTTAGAATGGGAATGAACTCTGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
*
17988534 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
17988560 C
1 C
17988561 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:17989796 original size:26 final size:26
Alignment explanation
Indices: 17989753--17989811 Score: 95
Period size: 26 Copynumber: 2.3 Consensus size: 26
17989743 CTTGGTCCAG
17989753 TCCG-ATG-TTAGACTGGGAATGAAC
1 TCCGTATGCTTAGACTGGGAATGAAC
*
17989777 TCTGTATGCTTAGACTGGGAATGAAC
1 TCCGTATGCTTAGACTGGGAATGAAC
17989803 TCCGTATGC
1 TCCGTATGC
17989812 CTAAGTCAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
24 3 0.10
25 3 0.10
26 25 0.81
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (26 bp):
TCCGTATGCTTAGACTGGGAATGAAC
Found at i:17991585 original size:26 final size:26
Alignment explanation
Indices: 17991547--17991599 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17991537 CCAGTCCGAT
* *
17991547 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17991573 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17991599 C
1 C
17991600 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17991787 original size:901 final size:900
Alignment explanation
Indices: 17988754--17996886 Score: 10374
Period size: 901 Copynumber: 9.1 Consensus size: 900
17988744 GGACGGGCAA
* * * ** * *
17988754 GTTCTCCGGTGATGCTCCGGCGATGGTGTCCCGATTAAGAACAGTGCAG-CACCAGC-CATGCCC
1 GTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGC-GCCACCAGCACATGCCC
* ** * * * *
17988817 GAGCCCAGCATGTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCATA
65 GAGCCCAGCATGTGCTGTCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
* * **
17988882 AGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATAAGCGTGCGGGCGCTCA
130 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * **
17988947 GCCGGCCAGAGGGGCGAGATGCGCAAGCTGAGGATCGATCGGGTCCCCCTCTGCGTGCTACCGAT
195 GCCGGCCAGAGGGGCG-GATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTACCGAT
* * ** **
17989012 CCTGTTGCCACAACCCTCGGTCTAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
259 CCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * * *
17989077 GACCGACAAAACGAGCGGGTTGGCGGGCGGGCGGGCACTACGCTGGCCAGAAAGACGGGATGCGT
324 AACCGACGAAACGAGAGGG--GGCGGGCGGGCGAGCACTACGC-GGCCAGAGAGACGGGATGCGC
* * * *
17989142 AAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTACATATTTCTGCATGCCAATGC
386 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGC
* *
17989207 CATTTTTATGGCTTCTAAATTCATACAATAGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
451 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * *
17989272 ACGACTCGTTTTCTATTTTTCACGACTTCTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTT
516 ACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
* * * *
17989337 TTCGGAAGGAGTTTTGGCCCCAAACTTGGCAGATGTGATCCTTGTATTGTTGTTGGCATGCCCAA
581 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * * * *
17989402 AAAGATTTAGCTAAAAAGTCAAAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGTCCCCATT
646 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
17989467 TTAGACACTTTAATGGCTACTAGCAGCAAACCTGCAAAATCT-AAATGCTCTTTAAGGGGGTGTG
711 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * **
17989531 AGTTCTCGAGGTTTGATGAGGGAGAGGAGGCCAATATAAGGGTCAAGTACCAGCACCCATCAAAC
776 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * * * *
17989596 ATCATGTGCGCACACCC-CCCCGGCCCTCCGATCGTCGAAACCCAAATGTCGCCGGTCAA
841 ATCATGTGCGCACACCCTCTCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAG
* * *
17989655 GTTCTCCGGTGATGCTCCGACGATGGTGCCCAG-CGAAGAAAAATGCGGCACCAGCACATGCCCG
1 GTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGCCACCAGCACATGCCCG
* * * * * *
17989719 AGCCCAACATGTGCTGGCGTAACCCTTGGTCCAGTCCGATGTTAGACTGGGAATGAACTCTGTAT
66 AGCCCAGCATGTGCTGTCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
** * * *
17989784 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATTAGCGTACGGGCGTTAAG
131 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* *
17989849 CCGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATCGGCAGGGT-CCCC-CT-C-TG----C-A--
196 CCGGCCAGAGGGGC-GGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTACCGATC
* * * *
17989903 -TGCTGCCGCAACCCTCGGTCGGGTCTGATCTTAGACTGGGAATGAATTCCATATGCCTCAGCCA
260 CTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
17989967 A-CAAGCGAAATGAGA--GGGCTGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAA
325 ACCGA-CGAAACGAGAGGGGGCGGGCGGGCGAGCACTACGC-GGCCAGAGAGACGGGATGCGCAA
* *
17990029 GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
388 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA
*
17990094 TTTTTATGGCTTGTAAATTCATTCAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
453 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * *
17990159 GACTCGTTTTCAATTTTTCATGATTTTTAAAACTTTTTGA-GGTTCGGGATTTTTTAAAATTTCT
518 GACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTT-ACGGTTCGAGATTTTTTAAAATTTTT
*
17990223 TCGGAAGGAGTTTTGGCCCCAAACTTGGCAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
582 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
17990288 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
647 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
17990353 CAGACACTTTAATGCCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCGA
712 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
17990418 GTTCTC-ATGGTTTGATGAGGGATAGGGGGCCAATATAAGAGCCAAGTACCAGCA-CCATCGCAC
777 GTTCTCGA-GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * **
17990481 ATCATGTGCGCACACCC-C-CAGCCCCCCCGATCATCGAAACCCCAATGCCACCGGTCAG
841 ATCATGTGCGCACACCCTCTCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAG
* *
17990539 GTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAAAGCAG-CACCAGCACATGCCC
1 GTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGC-GCCACCAGCACATGCCC
* * * * *
17990603 GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTA
65 GAGCCCAGCATGTGCTGTCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
** *
17990668 TGCTTAGACTGGGAATGAACTTTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCA
130 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * *
17990733 GCCGGCCAGAGGGGCACGATGCGTAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGTTACCGAT
195 GCCGGCCAGAGGGGC-GGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTACCGAT
* * * *
17990798 CCTGCTGCCGCAACCCTC-ATATCGGTCTAATCTTAGACTGGGAATGAACTCCGTATACCTAAGC
259 CCTGCTGCCGCAACCCTCGGT-CCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
*
17990862 CAACCGACGAAATGAGAGGGCGGGCGGGCGGGCGAGCACTACGTCGGCCAGAGAGACGGGATGCG
323 CAACCGACGAAACGAGA-GG-GGGCGGGCGGGCGAGCACTACG-CGGCCAGAGAGACGGGATGCG
*
17990927 CAAGCCGTGGATCGATAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTACGTGCCAATG
385 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATG
* * *
17990992 CCATTTTTA-GTGCTTGTAAATTCATACAATGGACGCTTAAGCCTTCATGTGAAGTTTCATGGCA
450 CCATTTTTATG-GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
*
17991056 AGACGACTCGTTTTCTATTTTTCACCATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAA-T
514 AGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATT
* * * *
17991120 TTTTCGAAAGGATTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTATTGGCATGCAC
579 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* * *
17991185 AAAAAAATTCAGGTAAAAACTTGAAGTGTACAAGATTTTTTGACCATTTGAAAAAAGTGTCCCCA
644 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* *
17991250 TTTCAGAAACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGTGTG
709 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* *
17991315 TGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATAGC
774 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
*
17991380 ACATCATGTGCGCACACCCTCTCCGGCCCCCCGATCGCCGGAACCCCAATGCC-TGCGGTCAG
839 ACATCATGTGCGCACACCCTCTCCGGCCCCCCGATCGTCGGAACCCCAATGCCGT-CGGTCAG
** * *
17991442 GTTCTCCGGCGATGCTTTGACGATGGTGCCCTGACGAAGAAAAATGCGCCACTAGCACATGCCCG
1 GTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGCCACCAGCACATGCCCG
* * * *
17991507 AGCCCAGCATGTGCTGTCGCAACCCTCGGCCCAGTCCGATCTTAGACTGGGAATGAACTCTGTAT
66 AGCCCAGCATGTGCTGTCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
*
17991572 GCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
131 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* ** * * * * *
17991637 TCAACCAAAGGGGCTGGATG-GACAAGCCGGGGATCGACCGTGT-CCCCTCCGCGTGCTACTGAT
196 CCGGCCAGAGGGGC-GGATGCG-CAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTACCGAT
* * * * * *
17991700 CCAGTTGCCGCAACCCTCAGCCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
259 CCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * *
17991765 AACCGACGAAACGAGAGGCGGGCGGGAGGAC-AGGCACTACGCCAGCCAGAGAGACGGGATGCGC
324 AACCGACGAAACGAGAGG-GGGCGGGCGGGCGA-GCACTACG-CGGCCAGAGAGACGGGATGCGC
*
17991829 AAGCCTTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGC
386 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGC
* * *
17991894 CATTTTTATCGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCTTGGCAAG
451 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * ** *
17991959 ACGACTCACTTTT-TATTTTTCACCATTTTCAAAACTTTTTGTGGCTT-GGGATTTTTTAAAATT
516 ACGACTC-GTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGG-TTCGAGATTTTTTAAAATT
17992022 TTTTCGGACA-GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
579 TTTTCGGA-AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* **
17992086 TAAAAAAAGACAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
643 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* *
17992151 ATTTCGGACACTTTATTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG-
708 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
17992215 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
773 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * * *
17992280 CACATCATGTACGCACAGCCCCCCCCGACCCCCCTGATCG-CTGGAACCCTAATGCCGTCGGTCA
838 CACATCATGTGCGCACA-CCCTCTCCGGCCCCCC-GATCGTC-GGAACCCCAATGCCGTCGGTCA
17992344 G
900 G
* * * * * * * ** *
17992345 GTTTTTTCGACGATGCTTCGGCGATGGTGCCCCGGCGAAGAAAAATACAACACCAGTACATGCCC
1 G-TTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGCCACCAGCACATGCCC
* * * * * * * *
17992410 GGGCCCAGCATGTTCAGTCGTAACCCTTGGTCCCGTTCAATTTTAGACTGGGAATGAACTCCGTA
65 GAGCCCAGCATGTGCTGTCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
* * * * *
17992475 TGCTTAGACT-GGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCATTCGGGTGCTCA
130 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
17992539 GCC--CTCAGAGGGGTGGGAAGCGCGAGCCGGGGATCGGCCGGGTCTCCCTCTGCGTGCTGCCAA
195 GCCGGC-CAGAGGGG-CGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTACCGA
* ** * *
17992602 TCCTGCTGCCGCAACACTCGGTTTGGTCTGATCTTAGAATGGGAATTAACTCCGTATGCCTAAGC
258 TCCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * * *
17992667 TAACCGATGAAA--TGAGCGGGCGGGTGGGC-A-CA--ACGCCGGCCAGAGAGACGGGATGTGCA
323 CAACCGACGAAACGAGAGGGGGCGGGCGGGCGAGCACTACG-CGGCCAGAGAGACGGGATGCGCA
* *
17992726 AGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
387 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
*
17992791 ATTTTTATGGCTTTCTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
452 ATTTTTATGGC-TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * * * *
17992856 ACGACTCGCTTTCTATTTTTCACCATTGTCAAAACTTTTTGA-GGTTTGGGATTTTTTAAAATTT
516 ACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTT-ACGGTTCGAGATTTTTTAAAATTT
* * * *
17992920 TTTCGGAAGGATTTTTGGCCCCAAACTTGGTAG-CTGTGATCCTTGTATTTTTATTGGCTTGCAT
580 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC-GTGATCCTTGTATTTTTGTTGGCATGCAC
*
17992984 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAATTGTCCCCA
644 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* *
17993049 TTTCGGACACTTTATTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG-G
709 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* *
17993113 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCAAAGTGCCAGCACCCATCGC
774 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* *
17993178 ACATCATGTGCGCATACCCTCTCCGGCCCCCCCGATCATCGGAACCCCAATGCCGTCGGTCAG
839 ACATCATGTGCGCACACCCTCTCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAG
* * * *
17993241 GTTCTCTGGCGATACTCCGACGATGGTGCCTCGACGAAGAAAAATGCGCCACCAGCACATGCCCA
1 GTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGCCACCAGCACATGCCCG
17993306 AGCCCAGCATGTGCTGTCAG-AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
66 AGCCCAGCATGTGCTGTC-GTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
* * * *
17993370 TGATTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAATCGAGCGTGCGGGTGCTCA
130 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * ** *
17993435 GCCGGCCAAAGGGGTGGTATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCGGCGTGCTACCGAT
195 GCCGGCCAGAGGGGCGG-ATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTACCGAT
* * ** * * * *
17993500 CCTACTACCGCAACCCTTAGTTCAGTCTGATTTTAGACTGGGAATGAACTTCGTATGCCTAAGCC
259 CCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * * * * * *
17993565 AACTGATGAAACCAGCGGCTGGGCGGGTGGGCAACCACTATGCCAGCCAGAGAGACGGGATGCGC
324 AACCGACGAAACGAGAGG--GGGCGGGCGGGCGAGCACTACG-CGGCCAGAGAGACGGGATGCGC
*
17993630 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCGATGC
386 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGC
*
17993695 CATTTTTATGGCTTGTAAATTCATAGAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
451 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* *
17993760 ACGACTCGTTTTCTATTTTTCACCATTTTAAAAACTTTTT---G--C-------------A----
516 ACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
* * *
17993803 -T-----GGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCGCAA
581 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * * *
17993862 AAAAATTCAGGTAAAAACTTGAAGTGTACAAGATTTTTTGACCATTTGAAAAAAGTGTCCCGATT
646 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
17993927 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGATCTTTAAGGGTGTGTG
711 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
17993992 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCTAAGTACCAGCACCCA-CAGCA
776 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC-GCA
* *
17994056 CATCATGTGCGCACACCCTCTCCGGCCTCCCCGATCGTCAGAACCCCAATTCCG-CTGGTCAG
840 CATCATGTGCGCACACCCTCTCCGGCC-CCCCGATCGTCGGAACCCCAATGCCGTC-GGTCAG
* * *
17994118 GTTCTCCGACGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGCGCCACCAGCACATGCCTG
1 GTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGCCACCAGCACATGCCCG
* * * *
17994183 AGCCCAGCATGTGCTGTCGTAACGCTCGGTCCGGTCCAATCTTAGATTGGGAATGAACTCTGTAT
66 AGCCCAGCATGTGCTGTCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
*
17994248 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCCACCCACGAAACGAGCGTGCGGGCGCTCAG
131 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * ** *
17994313 TCGGCCAGAGGGGCGGTATGCACAAGCCGGGGATCGGCCGGGTCCCCCTCTATGTGCTGCCGATC
196 CCGGCCAGAGGGGCGG-ATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTACCGATC
* * * * ** * *
17994378 CTACTACCGCAACCCTTGGTCTGGTCCAATCTTAGACTGGGAATGAACTCTGTATACCTAAGCC-
260 CTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
17994442 A---AC----C--GA-------------CGA--A--A------C-GAGAGACGGGATGCGCAAGC
325 ACCGACGAAACGAGAGGGGGCGGGCGGGCGAGCACTACGCGGCCAGAGAGACGGGATGCGCAAGC
* *
17994474 CATGGATCGATAGGGTGGTAGGTTGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATT
390 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATT
* * * * * * *
17994539 TTTATGGCTTGTAAATTCAAACTATGGTCCCTTAGGGCTTCACGCGAAGTTTCCTGGCAAGCCGA
455 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * *
17994604 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTC-AGGATTTTTTAAAATTTTTTC
520 CTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTC
* *
17994668 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC-TGTATTTTTTTTGGCATGCATAAAAA
584 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * *
17994732 AATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTCAAAAAAGTG-ACCCATTTCA
649 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
17994796 GACACTTTAATGGCTACTGGCAGCAGACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
714 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
17994861 TCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGTCCAAGTACCAGCACCCATCGCACATC
779 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * *
17994926 ATGTGCGCACACCCCCT-CGGCCCCCCTGACCGCCGGAACCCCAATGCCGTCGGTCAG
844 ATGTGCGCACACCCTCTCCGGCCCCCC-GATCGTCGGAACCCCAATGCCGTCGGTCAG
* * * * *
17994983 GTTCTCTGGCGATGCTCCGGCGATGGTGCCCCGACGATGAAAAATGCGGCACCAGCGCATGCCCG
1 GTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGCCACCAGCACATGCCCG
* * * * *
17995048 AGCCCAGCATGTACTGCCGTAACCTTCGGTCTGGTCCGATCTTAGACTGGGAATGACCTCCGTAT
66 AGCCCAGCATGTGCTGTCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* *
17995113 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTTAG
131 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * ** * * *
17995178 CCGGCCAGAGGAGCGGGGTGCACAAGCCGGGGATTAGTCGGGTCCCCCTCTGTGTGCTGCCGATC
196 CCGGCCAGAGGGGC-GGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTACCGATC
** * *
17995243 CTGCTGGTGCAACCCTCGGTCCGGTCTGATCTTATATTGGGAATGAACTCCGTATGCCTAAGCCA
260 CTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * ** * * * * * * * *
17995308 ACCGACGAAACGTGCGGGTGGGCGGGCAAGTGGGCACAATGCCGACCAGAGAGATGGTATCCGCA
325 ACCGACGAAACGAG-AGG-GGGCGGGCGGGCGAGCACTACG-CGGCCAGAGAGACGGGATGCGCA
*
17995373 AGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
387 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
17995438 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
452 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * * *
17995503 CGGCTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATATTTTAAAATTTTT
517 CGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
*** ** * *
17995568 TCGGAAGGAGTTTCAACCCCAAACTTTTTAGATGTGATCCTTGTATTTTTGTTGGCACGCACAAA
582 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
17995633 AAAATTCAGCTAAAAACTCGAAGTGTAGAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCACTT
647 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
17995697 CAGACACTTTAATCGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
712 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
17995762 GTTCTCGAGGATTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA-CAGCAC
777 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC-GCAC
* * * * *
17995826 ATCATGTGCGCACACCTTCTCCGGCCTCCCCGATTGTCGGAACCCCAATTCTGTCAGTCAG
841 ATCATGTGCGCACACCCTCTCCGGCC-CCCCGATCGTCGGAACCCCAATGCCGTCGGTCAG
* * *
17995887 GTTCTCCGACGATGCTCCGATGATGGTGCCCC-AGCGAAGAAAAATGCGCCACCAGCACATGCCT
1 GTTCTCCGGCGATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATGCGCCACCAGCACATGCCC
* * * *
17995951 GAGCCCAGCATGTGCTGTCGTAACGCTCGGTCCGGTCCAATCTTAGATTGGGAATGAACTCTGTA
65 GAGCCCAGCATGTGCTGTCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
*
17996016 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCCACCCACGAAACGAGCGTGCGGGCGCTCA
130 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* ** * **
17996081 GTCGGCCAGAGGGGCGGTATGCATAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGTCGAT
195 GCCGGCCAGAGGGGCGG-ATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTACCGAT
* * * ** * *
17996146 CCTGCTGCCACAACCCTTGGTCTGGTCCAATCTTAGATTGGGAATGAACTCTGTATGCCTAAGCC
259 CCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
17996211 -A---AC----C--GA-------------CGA--A--A------C-GAGAGACGGGATGCGCAAG
324 AACCGACGAAACGAGAGGGGGCGGGCGGGCGAGCACTACGCGGCCAGAGAGACGGGATGCGCAAG
* *
17996242 TCGTGGATCGATAGGGTGGTAGGTTGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCAT
389 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCAT
* * * * * * *
17996307 TTTTATGGCTTGTAAATTCAAACTATGGTCCCTTAGGGCTTCACGCGAAGTTTCCTGGCAAGCCG
454 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * *
17996372 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTC-AGGATTTTTTAAAATTTTTT
519 ACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTT
* * *
17996436 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCCTGTATTTTTTTTGGCATGCATAAAA
583 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
*
17996501 AAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTTGAAAAAAGTGTCCCCATTT
648 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA-TTTGAAAAAAGTGTCCCCATTT
* * * * ** * *
17996566 CAGACACTTTAAAGGCAACCGACAGCAAACCTGTAATGTCTCAAATGCTTTTTAAGGTGGTGTGA
712 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
17996631 GTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGCACA
777 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * *
17996696 TCATGTGCGCACACGGCC-C-CAGGCCCCCCAATCGCCGGAAACCCAATGCCGTCGGTCAA
842 TCATGTGCGCACAC--CCTCTCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAG
* * ** * ** * *
17996755 GTTCTCCGACGATGCTCTGGTGATGGCGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCG
1 GTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGCCACCAGCACATGCCCG
** * * ** * * *
17996820 AGCCCAGCATGTGCTACCGCAACCCTTGGTCCAATCTGATCTTAGACTGGAAATGAACTCTGTAT
66 AGCCCAGCATGTGCTGTCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
17996885 GC
131 GC
17996887 CTAAGCCAAC
Statistics
Matches: 6383, Mismatches: 685, Indels: 361
0.86 0.09 0.05
Matches are distributed among these distances:
840 171 0.03
841 1 0.00
843 1 0.00
845 1 0.00
848 1 0.00
850 1 0.00
852 2 0.00
858 1 0.00
863 1 0.00
864 4 0.00
865 311 0.05
866 150 0.02
867 365 0.06
868 176 0.03
869 153 0.02
870 2 0.00
871 1 0.00
873 2 0.00
875 2 0.00
876 176 0.03
877 404 0.06
879 1 0.00
881 1 0.00
884 62 0.01
885 583 0.09
886 76 0.01
887 3 0.00
888 3 0.00
889 64 0.01
890 1 0.00
892 2 0.00
893 2 0.00
894 3 0.00
895 112 0.02
896 196 0.03
897 545 0.09
898 6 0.00
899 5 0.00
900 273 0.04
901 736 0.12
902 556 0.09
903 613 0.10
904 513 0.08
905 101 0.02
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (900 bp):
GTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGCCACCAGCACATGCCCG
AGCCCAGCATGTGCTGTCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCCAGAGGGGCGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTACCGATCC
TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGAGGGGGCGGGCGGGCGAGCACTACGCGGCCAGAGAGACGGGATGCGCAAGCC
GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTT
TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
TCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGG
AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
GTGCGCACACCCTCTCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAG
Found at i:17992493 original size:25 final size:26
Alignment explanation
Indices: 17992452--17992502 Score: 86
Period size: 25 Copynumber: 2.0 Consensus size: 26
17992442 CCGTTCAATT
17992452 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
17992478 TTAGACT-GGAATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
17992503 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 17 0.71
26 7 0.29
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:17993376 original size:26 final size:26
Alignment explanation
Indices: 17993347--17993397 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
17993337 CGGTCCGATC
*
17993347 TTAGACTGGGAATGAACTCCGTATGA
1 TTAGAATGGGAATGAACTCCGTATGA
17993373 TTAGAATGGGAATGAACTCCGTATG
1 TTAGAATGGGAATGAACTCCGTATG
17993398 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGAATGGGAATGAACTCCGTATGA
Found at i:17994259 original size:26 final size:26
Alignment explanation
Indices: 17994223--17994275 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17994213 CCGGTCCAAT
* *
17994223 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17994249 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17994275 C
1 C
17994276 CTAAGTCCAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17995117 original size:26 final size:26
Alignment explanation
Indices: 17995088--17995140 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17995078 CTGGTCCGAT
*
17995088 CTTAGACTGGGAATGACCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17995114 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17995140 C
1 C
17995141 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17996028 original size:26 final size:26
Alignment explanation
Indices: 17995992--17996044 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17995982 CCGGTCCAAT
* *
17995992 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17996018 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17996044 C
1 C
17996045 CTAAGTCCAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17997610 original size:25 final size:26
Alignment explanation
Indices: 17997567--17997636 Score: 115
Period size: 25 Copynumber: 2.7 Consensus size: 26
17997557 TGATCTCGAT
17997567 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17997593 CTTAGACT-GGAATGAACTCGGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17997618 CTTTGACTGGGAATGAACT
1 CTTAGACTGGGAATGAACT
17997637 TCATATGCCT
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
25 23 0.56
26 18 0.44
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17997643 original size:26 final size:26
Alignment explanation
Indices: 17997567--17997644 Score: 106
Period size: 26 Copynumber: 3.0 Consensus size: 26
17997557 TGATCTCGAT
*
17997567 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
17997593 CTTAGACT-GGAATGAAC-TCGGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
* *
17997618 CTTTGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTTCGTATG
17997644 C
1 C
17997645 CTAAGTCAAC
Statistics
Matches: 46, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
24 1 0.02
25 21 0.46
26 22 0.48
27 2 0.04
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:17998467 original size:26 final size:26
Alignment explanation
Indices: 17998429--17998481 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17998419 CTAGTCTGAT
*
17998429 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACCCCGTATG
*
17998455 CTTAGACTGGGAATGAACCCCGTATG
1 CTTAGACTAGGAATGAACCCCGTATG
17998481 C
1 C
17998482 CTCAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACCCCGTATG
Found at i:18002608 original size:14 final size:14
Alignment explanation
Indices: 18002586--18002620 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
18002576 CGGTGATGCT
18002586 CCGACGATGGTGCC
1 CCGACGATGGTGCC
*
18002600 CCGATGATGGTGCC
1 CCGACGATGGTGCC
18002614 CCGACGA
1 CCGACGA
18002621 AGAAAAATGC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.17, C:0.34, G:0.34, T:0.14
Consensus pattern (14 bp):
CCGACGATGGTGCC
Found at i:18003603 original size:26 final size:26
Alignment explanation
Indices: 18003567--18003619 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18003557 CTGGACTGAT
* *
18003567 CTTAGACTGGGATTGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18003593 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18003619 C
1 C
18003620 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18005173 original size:12 final size:13
Alignment explanation
Indices: 18005138--18005174 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
18005128 TTGATGAGGG
18005138 ATAAGGGGCCAAT
1 ATAAGGGGCCAAT
18005151 ATAAGGGGCCAAT
1 ATAAGGGGCCAAT
18005164 ATAA-GGGCCAA
1 ATAAGGGGCCAA
18005175 GTACCAGCAC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 7 0.29
13 17 0.71
ACGTcount: A:0.41, C:0.16, G:0.30, T:0.14
Consensus pattern (13 bp):
ATAAGGGGCCAAT
Found at i:18005526 original size:892 final size:882
Alignment explanation
Indices: 18001940--18010433 Score: 8981
Period size: 892 Copynumber: 9.6 Consensus size: 882
18001930 TGTGCTGTAG
* *
18001940 CAACCCTC-AGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAA
1 CAACCCTCGA-TCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
*
18002004 AACGA-A--CGGGCGGGCCGACGGGCACTACGCCGGCCAGAGAGAC-GGATTGCGCAAGCCGTGG
65 AACGAGAGGCGGGCGGGCGGACGGGCACTACGCCGGCCAGAGAGACGGGA-TGCGCAAGCCGTGG
* *
18002065 ATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTCCATATTTCTGCATGCCAATGCCATTTTTAT
129 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
18002130 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
194 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
** * * * *
18002195 TTTCTATTTTTCATAATTTTTGAAACTTTATGCGGTTCGGGATTTTTGAAAAATTTGTT-GGAAG
259 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTT-TAAAATTTTTTCGGAAG
* * ***
18002259 GAGTTTTGGTCCCAAACCTGGTAGTTATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTC
323 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTC
* * * ** *
18002324 AGCTACAAACTCGAAGTTTACAAGATTTTATGACCATTTGAAAAAAAAGTCGCCATTTCAGACAC
388 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
*
18002389 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
453 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* *
18002454 AGGTTTAATGAGGGATA-G----GGGGCCAATATAAGGGCCAAGTACCTGCACCCATCGCACATC
518 AGGTTTGATGAGGGATAGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * *
18002514 ATGTGTGCACACCCCCCCGG-CCCCCCAATTGCCGGAACCCCAGTGCTGCCAGTCAAGTTCTCCG
583 ATGTGTGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCA---ATGCC-GTC--G--GTCAG
* * * *
18002578 GTGATGCTCCGACGATGGTGCCCCGATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGTACA
640 GT--T-CTCCGACGA---TGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACA
* * * *
18002643 TGCCTGAGCCTAGCATGTGCTGCCGCAACCCTCGGTCT-GATCCAATCTTAGACTGGGAATGAAC
699 TGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCTAG-TCCGATCTTAGACTGGGAATGAAC
* * * * * ** *
18002707 TCCGTATGACTAAGTCAACCCATGAAACGAGTGTGCAGGCGCTTAGCCAACCGGAGGGGCGGGAT
763 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAT
* * * * * * *
18002772 GTGAAAGCCGAGGATCGGCCGGGTCCCCCTTTGTGTGCTATCGATCCTGCTACCA
828 GCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCA
* * * * *
18002827 CAACCCTTTG-TCCAGTCTGATCTTAGATTAGGAAAGAACTCTGTATGCCTAAGCCAACCGACGA
1 CAACCC-TCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* ** * ** * *
18002891 AACGAGTGAGCTTGCGGACGGGTGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGG
65 AACGAGAG-GCGGGCGGGCGGACGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
*
18002956 ATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
129 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
*
18003021 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCGAGACGACTCGT
194 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* ** ** *
18003086 TTTTTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTCCTCAAAAGA
259 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
*
18003151 AGTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
324 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCA
18003215 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
389 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* *
18003280 TTAATGGCTACAGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGA
454 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* * *
18003345 GGTTTGATGAGGCATA-G----GGGGCCAATATAAGGGCCAAGTAGCAGCACCCATCCCACATCA
519 GGTTTGATGAGGGATAGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * *
18003405 TGTGCGCACACCCCCGTCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTTCG
584 TGTGTGCACACCCCC-CCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
* * * * *
18003470 GCGATGCTCCGACGATGATGCCCCGACAAAGATAAATGCGGCACCAGCACATGCCCGAGCCCAGC
648 ACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGC
* *
18003535 ATGTGCTGCCACGACCCTCAGTCTGGACTGATCTTAGACTGGGATTGAACTTCGTATGCTTAGAC
713 ATGTGCTGCCGC-AACC-C--TC---A--G-TC-T--A----G--T---C--CG-AT-CTTAGAC
* * * **
18003600 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGTGTGCGGGCGCTTAATCGGCCAG
752 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
* * ** *
18003665 AGGGGCGGGATGCGCAGGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTA-CGAATCCTACTGC
817 AGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTACCG-ATCCTGCTGC
18003729 CA
881 CA
* * *
18003731 TAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
1 CAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * * *
18003796 AC--GA-GTGGGCGGGCGGAAGGGCACTACGTCGGCCAGAGAGACGGTATGCGGAAGCCGTGGAT
66 ACGAGAGGCGGGCGGGCGGACGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* * * *
18003858 CGATAGGGTGGTAGGTGGGCTTAGGCAGATCTACATATTTCTGCATGCCAATGCCCTTTTTATGG
131 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
* * * *
18003923 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCTTGGCAAGAGGACTCATTT
196 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * * *
18003988 TCTATTTTTCACGATTTTTGAAACTTTTTGA-GATTCGAGATTTTTTAAAATTTTTTCAGATGGA
261 TCTATTTTTCACGATTTTTGAAACTTTTT-ACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA
* * *
18004052 TTTTTGGCCCCAAATTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAG
325 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAG
* ** *
18004117 CTAAAAACTCGAAGTGTACAAGATTTTGTGAGCATTTGAAAAAAGTGTCCGAATTTTAGACACTT
390 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* *
18004182 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGATCTTTAAGGGGGTGTGAGTTCTTGAG
455 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* * * * *
18004247 GTTTGATGA--G--A-GATAAGGGGCCATTATAAGGGCCACGTACCAACACCCATCGTACATCAA
520 GTTTGATGAGGGATAGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * * * * * ** *
18004307 ATGCGCACACCCCCTCGACCGCCCCGATCGCTGGAACCCCAACGTCACCGGTCAAGTTCTCCGAC
585 GTGTGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGAC
* ** * * * *
18004372 GATGGTCCGGTGATGGTGCCCCGATGAAGAAAAATATGGCACCAGCACATGCCCAAGCCTAGCAT
650 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCAT
** * * * **
18004437 GTGCTGTGGCAACCCTCGGTTTGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
715 GTGCTGCCGCAACCCTCAGTCTAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * *
18004502 ACCCACGAAACGAGCGTGTGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCTGGGGATCG
780 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
** * *
18004567 GTAGGGTCCCCCTCTGCATGCTACCGATCCTGCTGCCG
845 GCCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCA
* * * *
18004605 TAACCATC-AGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAACCGACGA
1 CAACCCTCGA-TCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * *
18004669 AACGAGAGGGCGGGTGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATACGCAAGCCGTGG
65 AACGAGA-GGCGGGCGGGCGGACGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* * **
18004734 ATCGATAGGGTGCTAGGTTGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTAT
129 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
*
18004799 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGGAGTTTCATGGCAAGACGACTCGT
194 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
** * * *
18004864 TTTCTATTTTTCACGATTTTCAAAACTTTTTATGGTTAGGGATTTTTTAAAATTTTTTCGGAAGT
259 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
* * *
18004929 AGTTTTGGCCCCAAACTTGGTAAAGGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAACATTG
324 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAA-ATTC
* *
18004994 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAGAAGGTGTCCCCATTTCAGACAC
388 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* * * *
18005059 TTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTTTTTAAAGGGGCGTGAGTTCTCG
453 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
*
18005124 AGGTTTGATGAGGGATAAGGGGCCAATATAAGGGGCCAATATAAGGGCCAAGTACCAGCACTCAT
518 AGGTTTGATGAGGGAT-A--GG-----ATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
*
18005189 CGCACATCATGTGTGCTCACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAG
575 CGCACATCATGTGTGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAG
* * * * *
18005254 GTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGTAGAGAAATACGGCACTAGCACATGCCTG
640 GTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCG
* * ** *
18005319 AACCTAGCATGTGCTATCGCAACCCTCAGTCTAGTCCGATCTTAGACTGGGAATGAACTCCGTGT
705 AGCCCAGCATGTGCTGCCGCAACCCTCAGTCTAGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* ** *
18005384 GCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGGTAGAGGGGCGGGATACGCAAG
770 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
* * * * * *
18005449 CAGGGGATCGACCGGGTTCCCCTCTGCGTGCTGCCGATCCTGCTACCC
835 CCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCA
* *
18005497 CAACCCTCGATCCAGTCTGATCCTAGACTGGGAATGAACTCCGTATGCCTAGGCCAACCGACGAA
1 CAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * * * * *
18005562 ACGAGCGAGCAGGCAGGCGGGC-AGAACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
66 ACGAGAG-GCGGGCGGGCGGACGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* *
18005626 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATG
130 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
18005691 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
195 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * * * * *
18005756 TTCTATTTTTTCGCCATTTTTGAAACTTTTTGCAGTTCAGGATTTTTTAAAATTTTTTTGGAAGG
260 TTCTA-TTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
* * * * * *
18005821 AGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTGTTTTTGTTGGCATTCA-TAAAAAAGTCA
324 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCA
* * *
18005885 CCTACAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
389 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
*
18005950 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCCTCG
454 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT-CTCG
* *
18006015 A-GTTGTGATGAGGGATA-G----GGGGCCAATA-AAAGGCC-AGTA-CAACA-CCATCGCACAT
518 AGGTT-TGATGAGGGATAGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * *
18006070 CATGTGTG---------CC-G-TCCCCCGATCACCGGAACCCC-ATGCCG-C-GTCAGGTT-TTC
582 CATGTGTGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
* * * *
18006120 GACGATGCTTCGATGATGGTGCCCCGACGACAG-AAAATATGGCACCAGCACATGCCTCAAGCCC
647 GACGATGCTCCGACGATGGTGCCCCGACGA-AGAAAAATACGGCACCAGCACATGCC-CGAGCCC
* * * *
18006184 AGCAT-TGCT--C-AAACCCTCTAGGTC-GGTCCGATTTTA-AC-AGG-ATGGAA--CCGTATG-
710 AGCATGTGCTGCCGCAACCCTC-A-GTCTAGTCCGATCTTAGACTGGGAAT-GAACTCCGTATGC
* ** * **
18006238 CT-AGTAAAGTGCATCTGAAACGAGCG-GCGGGCACTCAGTAGGCCAGAGGGGCGGGATGCGCAA
772 CTAAGTCAA-CCCA-C-GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA
* * * *
18006301 GCCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTACCGATCCATTCTACCG
834 GCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTACCGATCC-TGCTGCCA
* * * * * *
18006351 TAACCC-CGATTCGGTCTAATCTT-GAACTGGGAATGAACTCCGTATGGCTAAGCCAACTGACGA
1 CAACCCTCGATCCAGTCTGATCTTAG-ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * *
18006414 AAC-A-A-----GCGGGCGGACGGGCACTACGTCGGCCAGAGAGACGAGATGCGCATGCCGTGGA
65 AACGAGAGGCGGGCGGGCGGACGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* * *
18006472 TCGATAGTGTGGTAGGTGGGTTTTGGCACATCTTCATATTTCTGCATGCCAAAGCCATTTTTATG
130 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
* * *
18006537 GCTTTTAAATTCATAAAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTT
195 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * *
18006602 CTCTATTTTTCACGATTTTTGAAACTTTTTGCAGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA
260 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA
* * * *
18006667 ATTTTGG-CCCAAACTTGGTAGGCGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAG
325 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAG
* *
18006731 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAGATACTT
390 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * * * *
18006796 TAATGGCTATTAGCAGCAGACCGGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAG
455 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
*
18006861 GTTTGATGAGGGATA-G----GGGGCCAATATAAGGGCCAAGTACCACCACCCATCGCACATCAT
520 GTTTGATGAGGGATAGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* *
18006921 GTGTGCACA-CCCCCCGGCCCCTCCGATCGCCGGAACCCCAATGCCG-CTGGTCAGGTTCTCCGG
585 GTGTGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTC-GGTCAGGTTCTCCGA
* * * *
18006984 CGTTACTCC-ATCGATGGTGCCCGCCGACGAAGGAAAAAAATGTTGACAACC-GCACATGCCCGG
649 CGATGCTCCGA-CGATGGTG-CC-CCGACGAA-GAAAAATACG--G-C-ACCAGCACATGCCC-G
* ** *
18007047 AGCCCAGCATGTGCTGCCGCAACCCTTGAGTCCGGTCCGATCTTTAGACTGGAAATGAACTCTGT
705 AGCCCAGCATGTGCTGCCGCAACCC-TCAGTCTAGTCCGATC-TTAGACTGGGAATGAACTC---
** * *
18007112 ACGCTTTAAGACTGGGAAATAGATACTCCCGGCATTCTAAGTCACCATGAAA-GAGCGTGCGGGT
765 -CG---T---A-T--G-CCT--A-A------G---TC-AA--C-CCACGAAACGAGCGTGCGGGC
* ** * * * *
18007176 GCTCAAGCCGACCTTAGGGGC-GGATACG-TAGCCGGGGATCGACCAGGT--CCCTCTGC--GC-
803 GCTC-AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCT
* * * * *
18007234 GCCAAACCTGAT---T
867 ACCGATCCTGCTGCCA
* * *
18007247 CAA-CCTTGGTCC-GTTTGAATCTTAGACT-GGAATGGAAACTCCGT-TGCCT-AGCCAACCGAC
1 CAACCCTCGATCCAGTCTG-ATCTTAGACTGGGAAT-G-AACTCCGTATGCCTAAGCCAACCGAC
* * * * * * *** *
18007307 GAAATGAGCGTGTGGGCTGGCGGGCGGGCACTATGTTAGCCATAGAGACGGGAATGCGCCAAGCC
63 GAAACGAGAG-GCGGGCGGGCGGACGGGCACTACGCCGGCCAGAGAGACGGG-ATGCG-CAAGCC
* * *
18007372 GTGGATCGATAGGGTGGTTAGGTGGGTTT-TGCACAGTCTTCATATTTCCTGCGTGCCAATGCGG
125 GTGGATCGATAGGGTGG-TAGGTGGGTTTAGGCACA-TCTTCATATTT-CTGCATGCCAATGC-C
**
18007436 A-TTTTATGGCTTGTAAAATTCATACAATGGTCCCCCCAAGCCTTCACGTGAAGTTTCATGGCAA
186 ATTTTTATGGCTTGT-AAATTCATACAATGGT-CCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * *
18007500 GACGACTCGTTTTCTATTTTTCATGATTTTT-AAAATTTTTAGCAGTTCGGG-TTTTTTAAAATT
249 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA-CGGTTCGGGATTTTTTAAAATT
* * *
18007563 TTTTCGGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGTATGCAC
313 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAC
* *
18007628 AAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGACCCCA
378 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
*
18007693 TTTTAGACACTTTTAATGGCTACTGGCAGGCAAACCTGTAAAATCGT-AAATGCCTCCTTTAAGG
443 TTTCAGACAC-TTTAATGGCTACTGGCA-GCAAACCTGTAAAATC-TCAAATG-CT-CTTTAAGG
*
18007757 GGGTGTGAGTTCTCGAGGTTTGAT---CG--AGGAT-AGGGGCCAATATAATGGGCCAAGTACCC
503 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGATAAGGGGCCAATATAA-GGGCCAAGTA-CC
* * * *
18007816 AGCACCGATATGCACA-CATGTGTG--CACCCCCCCGG---CCCCGATCGTCGG-ACCCATAATC
566 AGCACCCAT-CGCACATCATGTGTGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCC-CAA--
** *
18007874 TGCCGGTCCCAGGTTCTCAGATGAAGCTCCGACGATGCCTCTGACGATGGGTGCCCCGACGAAG-
627 TGCC-GT--C-GG---TCAG--G-TTCTCCGACGATG-CTCCGACGAT-GGTGCCCCGACGAAGA
* * * * * *
18007938 ACAATGCGGCACCAGCACATGCCAGAGCCCAGCTTATGCTGCCACAACCCTCGGTCCAGTCTGAT
680 AAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CC-C--T-CA----G-T
* * * *
18008003 CTTATTTTGGGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTTAGCCC
735 C------T----A-G---TCC-GAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * * * * * *
18008068 ATGAAATGAGCGTACGGGCGCTCAGACGACCAGATGGGCAGGG-TGCGCTAGCCGGGGGTTGGCC
784 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC-GGGATGCGCAAGCCGGGGATCGGCC
* * ** * *
18008132 AGGTCCCCCTCTGTGTGCTGTCGATCCTGCTGTCG
848 GGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCA
* * *
18008167 CAACCCTC-AGTCCAGTCTGATCTTAGACTGGGAATGAACTCCG-ATGCTTAAGCCAACTGACAA
1 CAACCCTCGA-TCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * *
18008230 AACGAGTGGACGGGCGGGCAGG-CGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGTCGTG
65 AACGAGAGG-CGGGCGGGC-GGACGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* * ***
18008294 GATCAAAAGGGTGGTA-GTAGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTT
128 GATCGATAGGGTGGTAGGT-GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
* * *
18008358 ATGGCTTGTAAATTCATACAATGGTCCCTTAAACCTTCATGTGAAGTTTCATGGCAAGACGACTT
192 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * *
18008423 GTTTTCTATTTTTCATGATTTTTGAAACTTTTCACGGTTCGGGATTGTTTAAAATTTTTTCGGAA
257 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAA
* ** *
18008488 GGATTTTTGGCCCTGAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATT
322 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATT
*
18008553 CAGCTAAAAACTCGAAGTGTTCAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
387 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * * *
18008618 CTTTAATGGCTACTAGAAGCAAACATGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTC
452 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
*
18008683 GAGGTTTGATGAGGGATAGG---A--GGCCAATATAAGGGCCAAGTAGCAGCACCCATCGCACAT
517 GAGGTTTGATGAGGGATAGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * ** ** * *
18008743 CATATGCGCACACCCCCCCCGAACCCCCCGATCATCGGAACCCCAATGCCGCCGGTCAGGCTCTC
582 CATGTGTGCACA-CCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTC
**
18008808 CGACGATGCTCCCG-CGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCC
646 CGACGATGCT-CCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCC
*
18008872 AGCATGTGCTGTCGCAACCCTCGGTCTGATCTGATCTTAGACTAGGAATGAACTCTGTATGCTTA
710 AGCATGTGCTGCCGCAA-CC-C--TC--A---G----T---CTA-G--T---C-C-G-AT-CTTA
* * * * * *
18008937 GACTGGGATTGAACTACGTATGCCTAAGTCAACCCATGGAAGGAGCGTGCGGACGCTCAGCCGGC
749 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* ** * * *
18009002 CAGAGGGGCGGGATGCGCAAGCTGGGGATCGATCGGGTCCCCCTCTGTGTGCTATCGATCCTACT
814 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTACCGATCCTGCT
18009067 GCCA
879 GCCA
* * * * *
18009071 CAACCCTCGGTCCGGTCTGATCTTATACTGGGAATGAACTCCGTATCCCTAAGCCAACTGACGAA
1 CAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * * *
18009136 AC--GA-GCGAGCGGGCCGACGGGCACTACGCGGGCCAGAGAGATGGGATGCCCAAGCCGTGGAT
66 ACGAGAGGCGGGCGGGCGGACGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
*
18009198 C-------------------TT---CATAT-TTC-TA----T--ATGCCAATGCCATTTTTATGG
131 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
* * *
18009233 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGAGAAGTTTCAGGGCAAGACGACTCATTT
196 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* ** * * *
18009298 TCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTTGGAAGGAG
261 TCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
*
18009363 TTTTGGCCCCAAACCTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAC-AAAAAATTCAGC
326 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGC
18009427 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCCATTTCAGACACTT
391 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG-TCCCCATTTCAGACACTT
* *
18009492 TAATGGCTACTGGCAACAAACCTGTAGAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG-G
455 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* * * *
18009556 GTTTGAT--GGG---GGATAGGGGGCCAATATAAAGGCCAAGTAGCAGCACCCATCACACATCAT
520 GTTTGATGAGGGATAGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * ** * * * ** * *
18009616 GTGCGCGCA-CCCCCC-GCCACCCCGAAAGTCGGAAGCCCAATACCACCAGTCAGGTTCTCCGGC
585 GTGTGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGAC
* * ** *
18009679 GATGCCCCGGCGATGGTGCCTTGACGAAGAAAAA-AGCGGCAACAGCACATGCCCGAGCCCAGCA
650 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATA-CGGCACCAGCACATGCCCGAGCCCAGCA
* * ** * *
18009743 TGTGCTGCCACAACCCTCGGTCCGGTCTGATCTTATACTGGGAATGAACTCCGTATGCCTAAGTC
714 TGTGCTGCCGCAACCCTCAGTCTAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * *
18009808 AACCCGCGAAACGAACGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATT
779 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
* * *
18009873 GGCCAGGTCCCCCTCTACGTGCTACC-ATTCTTGCTGCCA
844 GGCCGGGTCCCCCTCTGCGTGCTACCGA-TCCTGCTGCCA
* * * ** * ** *
18009912 CAACCCTTGGTCTAGTCAAATCTTAGACTGGCAATGAACTCCGTATATCTAAGCCAACTGACGAA
1 CAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * *
18009977 AC--GA---------GCGGACGGGC-C--CGCCCGCCAGAGAAACTGGATGCGCAAGCCGCGGAT
66 ACGAGAGGCGGGCGGGCGGACGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* *
18010028 CGATAGGATGGTAGGTGAGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
131 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
* * * * * *
18010093 CCTGTAAATTCATACACTGGTCCCGTAAGCCTTTACGTGAAGTTTCATGGCAAGACAACTCATTT
196 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * * * * *
18010158 TCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAGAATTTTTTTGGAAGGAT
261 TCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
* *
18010223 TTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTCGGCATGCACAAAAAAATTCAGC
326 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGC
* * *
18010288 TAAAAAGTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTT
391 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* *
18010353 AATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGTGTTCTCGAGG
456 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
*
18010418 ATTGATGAGGGATAGG
521 TTTGATGAGGGATAGG
18010434 GGCCACTATG
Statistics
Matches: 6478, Mismatches: 791, Indels: 697
0.81 0.10 0.09
Matches are distributed among these distances:
830 30 0.00
832 1 0.00
833 9 0.00
840 1 0.00
841 175 0.03
842 2 0.00
843 1 0.00
844 67 0.01
845 204 0.03
846 166 0.03
847 4 0.00
848 20 0.00
849 2 0.00
850 1 0.00
851 6 0.00
852 10 0.00
853 127 0.02
854 26 0.00
855 5 0.00
856 11 0.00
857 13 0.00
858 23 0.00
859 59 0.01
860 282 0.04
861 72 0.01
862 22 0.00
863 27 0.00
864 9 0.00
865 12 0.00
866 7 0.00
867 102 0.02
868 29 0.00
869 7 0.00
870 112 0.02
871 263 0.04
872 14 0.00
873 5 0.00
874 203 0.03
875 12 0.00
876 9 0.00
877 10 0.00
878 353 0.05
879 139 0.02
880 1 0.00
881 11 0.00
882 5 0.00
883 1 0.00
884 7 0.00
886 1 0.00
887 63 0.01
888 7 0.00
889 6 0.00
890 373 0.06
891 416 0.06
892 488 0.08
893 1 0.00
895 24 0.00
896 23 0.00
897 12 0.00
898 1 0.00
899 7 0.00
900 340 0.05
901 288 0.04
902 5 0.00
903 65 0.01
904 391 0.06
905 82 0.01
906 43 0.01
907 36 0.01
908 60 0.01
909 184 0.03
910 55 0.01
911 54 0.01
912 83 0.01
913 67 0.01
914 54 0.01
915 92 0.01
916 193 0.03
917 65 0.01
918 25 0.00
919 30 0.00
920 25 0.00
921 65 0.01
922 27 0.00
923 10 0.00
924 7 0.00
925 2 0.00
926 1 0.00
927 1 0.00
929 1 0.00
930 1 0.00
933 1 0.00
936 3 0.00
939 3 0.00
940 19 0.00
941 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (882 bp):
CAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
ACGAGAGGCGGGCGGGCGGACGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
TCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGC
TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
TTTGATGAGGGATAGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
TGTGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACG
ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATG
TGCTGCCGCAACCCTCAGTCTAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGG
CCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCA
Found at i:18008936 original size:26 final size:26
Alignment explanation
Indices: 18008907--18008959 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18008897 CTGATCTGAT
18008907 CTTAGACTAGGAATGAACT-CTGTATG
1 CTTAGACTAGGAATGAACTAC-GTATG
* *
18008933 CTTAGACTGGGATTGAACTACGTATG
1 CTTAGACTAGGAATGAACTACGTATG
18008959 C
1 C
18008960 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTACGTATG
Found at i:18011302 original size:26 final size:26
Alignment explanation
Indices: 18011273--18011325 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18011263 CCGGTCTGAT
*
18011273 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18011299 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18011325 C
1 C
18011326 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18012202 original size:26 final size:26
Alignment explanation
Indices: 18012173--18012225 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18012163 CTCGTCCGAT
*
18012173 CTTACACTGGGGATCAACTCCGTATG
1 CTTACACTGGGAATCAACTCCGTATG
* *
18012199 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATCAACTCCGTATG
18012225 C
1 C
18012226 CTATAGGTCA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATCAACTCCGTATG
Found at i:18013123 original size:26 final size:26
Alignment explanation
Indices: 18013094--18013144 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
18013084 CCGGTCGGAT
*
18013094 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
18013120 CTTAGACTAGGAATGAACTCCGTAT
1 CTTAGACTAGGAATGAACTCCGTAT
18013145 ACCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:18014045 original size:28 final size:26
Alignment explanation
Indices: 18014009--18014063 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 26
18013999 GCGATCCGAT
* *
18014009 CTTAGACTGGGTAATAAACTTCCGTATG
1 CTTAAACTGGG-AATAAAC-TCCATATG
*
18014037 CTTAAACTGGGAATGAACTCCATATG
1 CTTAAACTGGGAATAAACTCCATATG
18014063 C
1 C
18014064 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 8 0.33
27 6 0.25
28 10 0.42
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (26 bp):
CTTAAACTGGGAATAAACTCCATATG
Found at i:18014938 original size:26 final size:26
Alignment explanation
Indices: 18014902--18014953 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
18014892 CGGTCTGATT
18014902 TTAGACTGGGAATGAACTCCATATGC
1 TTAGACTGGGAATGAACTCCATATGC
*
18014928 TTAGACTGGGAATTAACTCCATATGC
1 TTAGACTGGGAATGAACTCCATATGC
18014954 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:18015825 original size:26 final size:26
Alignment explanation
Indices: 18015789--18015841 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
18015779 CCGGTTCGAT
18015789 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
*
18015815 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
18015841 C
1 C
18015842 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:18016713 original size:26 final size:26
Alignment explanation
Indices: 18016683--18016735 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18016673 TCCGTCCGAT
18016683 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
18016709 CTTAGACTGGGAATTAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18016735 C
1 C
18016736 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:18018504 original size:26 final size:26
Alignment explanation
Indices: 18018468--18018519 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
18018458 CGGTCCGATT
*
18018468 TTAGACTGGGAATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
18018494 TTAGATTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
18018520 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:18018972 original size:894 final size:894
Alignment explanation
Indices: 18011192--18019335 Score: 9695
Period size: 895 Copynumber: 9.1 Consensus size: 894
18011182 CCCGATCGTC
* * * *
18011192 GGTGCCCTGACGAAGAAAAATACGGCAACAGCACATGCCTGAGCCCAGCATGTGCTACCGCAACC
1 GGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
* *
18011257 CTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGT
66 CTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* * *
18011322 ATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTTAGCCGGCCAGAGGGGCGGGGTGCGCA
131 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
* * * * * * * ** *
18011387 AGACGGGGATCG-TCTGGGTCTCCCC-CTACATGCTGCCAATCCTACTACCGTAACCCTCAGTTC
196 AGCCGGGGATCGATC-GGGTC-CCCCTCTGCGTGCTACCGATCCTGCTGCCACAACCCTC-GTCC
** * * * * * *
18011450 GATCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAACGAACTGATGAAACGAACGGGGCGG
258 GATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATG-A----GCGG
* * *
18011515 GCAGGCGGGCACTACGCCAGCCAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGG
318 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* ** *
18011580 TGGGTTTAGGCATATCTTCATATTTCTG-CATTTCAATGCCATTTTTATGGGTTGTAAATTCATA
383 TGGGTTTAGGCACATCTTCATATTTCTGTCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* *
18011644 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCACGA
448 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
** * *
18011709 TTTTCAAAACTTTTTATGGTTCGGGATTTTTAAAAATTTTTTTTCGGAAGGAGTTTTGGCCCCAA
513 TTTTCAAAACTTTTTGCGGTTTGGGATTTTTTAAAA--TTTTTT-GGAAGGAGTTTTGGCCCCAA
* * * *
18011774 ACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCATAAAAAAATTCAGCTTAAAACTTGAA
575 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* * *
18011839 GTGTACAAGATTTTGTGATCATTTGAAAAAAGTGTCCCCATTTCAGAGACCTTAATGGCTACTGG
640 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* * *
18011904 TAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTCATGAGGGA
705 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * *
18011969 TAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCACCACACATCATGTGTGCACACCCCCCGGC
770 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGC
* * * * * *
18012034 CCTCCCTGATCCGCCGGAA-CCCAATGCTGCCGGTCAGGTTTTTCGACGATGCTCCGACGAT
835 CC-CCCCGAT-CGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGAT
* * *
18012095 GGTG-CCCGACG-AG-AAAATACGGCACCAAGCACATCCCCGAG-CCAGCATGTGCAGCCGTAA-
1 GGTGCCCCGACGAAGAAAAATACGGCACC-AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
* * * *
18012155 CCTCGGTCCTCGTCCGATCTTACACTGGGGATCAACTCCGTATGCTTAGACTGGGAATGAACTCC
65 CCTCGGTCC-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
* * ** * *
18012220 GTATGCCTATAGGTCAACCCACAAAAATGAGCGTGCAAGCGCTCA-CTGGCCAGAGGGCACGGGA
129 GTATGCCTA-A-GTCAACCCAC-GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG-GCGGGA
** * * *
18012284 TGCCGCAAATCGGCGGATCGATCGGGT-CCCCTCTGCGTGCTGCCCGATCCTACTGCCGCAACCC
190 TG-CGCAAGCCGG-GGATCGATCGGGTCCCCCTCTGCGTGCT-ACCGATCCTGCTGCCACAACCC
** * * * * *
18012348 TCGTCCGATCCAATCTTACACCTGGAAATG-ACTCCATATACCCTAAGCCCAACCAGATGAAATG
252 TCGTCCGATCTGATCTTAGA-CTGGGAATGAACTCCGTAT-GCCTAAG-CCAACC-GACGAAATG
*
18012412 AGCGGGCGGGCGGGATGGGCGGGCACTACAGTCCAGGCCAGAGAAAACGGGAATGCGCAACGCCG
313 A----GCGGGC-----GGGCGGGCACTAC-G-CC-GGCCAGAG-AGACGGG-ATGCGCAA-GCCG
* * *
18012477 TGGATCGATAGGGTTGGTAGGTGGGTTTAGGCACAGTCTTCATATTTCTAT-GTGGCAATGCCAT
363 TGGATCGATAGGG-TGGTAGGTGGGTTTAGGCACA-TCTTCATATTTCTGTCATGCCAATGCCAT
* **
18012541 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGACTTCTTGTGAAGTTTCATGGCAAGACG
426 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
** * *
18012606 ACTCGTTTTCTATTTTTCATAATTTTCAAAACTTTTTACGGTTTGGGATTTTTTAGAATTTTTTT
491 ACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTTGGGATTTTTTA-AAATTTTTT
* * * *
18012671 GGATGGAGTTTTGGTCCCAAACTTGGTAGGCGTGATCCTTGTATTTTTGTTGGAATGCACAAAAA
555 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* ** *
18012736 AATTCAGCTAAAAACTCGAAGTGTACATGATTTTGTGACCATTTGAAAATTGTGTCACCATTTCA
620 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
** * *
18012801 GACAGATTAATAGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
685 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * * * **
18012866 TCTCTAGGTTTGATGAGGGATAGAGGGCTAATATAAGGGCCAAGTACCGGCACCCATTGCACATC
750 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATC
* *** *
18012931 ATGTGCGCACACCCCCCCCGGCCCCCTCGATCATTGGAACCCCAATGCCGCCGGTCAGGTTCTCC
815 ATGTGCGCACA--CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
* * *
18012996 GACGATGCTCTGGCGAT
878 GGCGATGCTCCGACGAT
* * * *
18013013 GGTGCCCC-AGCGAAGAAAAATGCAGCACCAGCACATGCCCGAGGCCAGCATGTGCTGCTGCAAC
1 GGTGCCCCGA-CGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
* *
18013077 CCTCGGTCCGGTCGGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCG
65 CCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * * * * *
18013142 TATACCTAAGTCAACCCACGAAACGAGTGTACGGGCGCTCAACCGGCCAGAGGGGCGAGATGCAC
130 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC
* * * ** * *
18013207 AA-CTCGGGGATCGACCGGGTCCCCCACTGCGCGCTGTCGATCCTGTTGCCGCAACCCTCTGTCC
195 AAGC-CGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCACAACCCTC-GTCC
* * * * *
18013271 -AGTCCGATCTTAGATTGGGAATCAACTCCGTATACCTAAGCCAACTGACGAAACTAGCGAGCGG
258 GA-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA-T---GAGCGG
** * * *
18013335 GCGGGCGGGCACTTGGCCGGCCACTAGAGATGGGAATGTGCAAGCCGTGGATGCGATAGGGTGGT
318 GCGGGCGGGCACTACGCCGGCCA-GAGAGACGGG-ATGCGCAAGCCGTGGAT-CGATAGGGTGGT
* * * *
18013400 AGGTGGGTTTTAGGCACATCTTCATATTCCTGCCATGCCCATGCCATTTTTATGGCGTGTAAATT
380 AGGTGGG-TTTAGGCACATCTTCATATTTCTGTCATGCCAATGCCATTTTTATGGCTTGTAAATT
* * * *
18013465 CATACAGTGGGCCGCCTTAGGCCTTCGCGTTGAAGTTTCATGGCAAGACGACTCGTTTT-TATTT
444 CATACAAT-GGTC-CCTTAAGCCTTCACG-TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * * *
18013529 TTCACACGATTTTCACAAACTTTTTACGGTTCGGGATTTTTTTTAAATTTTTTTTGAAGGAGTTT
506 TT--CACGATTTTCA-AAACTTTTTGCGGTTTGGGA--TTTTTTAAAATTTTTTGGAAGGAGTTT
* *
18013594 TGG-CCCAAACCTTGGTAGACGTGATCCCTTGTATTTTTTTTTGGCATGCACAAAAAAATTCAGG
566 TGGCCCCAAA-CTTGGTAGACGTGAT-CCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGC
* * *
18013658 TAAAAACTCAAAGTGTACAAGATTTTGTGACGCATTT--CAAAA-TGTCCCCATTTTAGGACACT
628 TAAAAACTCGAAGTGTACAAGATTTTGTGAC-CATTTGAAAAAAGTGTCCCCATTTCA-GACACT
* * * *
18013720 TTAATTGGCTATTGGCATCAAACCTGTTAACAATCTCAAATGGCTCTTTACGAGGGTGTGACGTT
691 TTAA-TGGCTACTGGCAGCAAACCTG-TAA-AATCTCAAAT-GCTCTTTAAGGGGGTGTGA-GTT
*
18013785 CTCGAGGTTTGAATGAAGGGATAGGGGGCC-ATAT-AGTGGCCAAGTACTCGAGCACCGCATCGC
751 CTCGAGGTTTG-ATG-AGGGATAGGGGGCCAATATAAG-GGCCAAGTAC-C-AGCACC-CATCAC
* * * *
18013848 ACAATCATGTGCCGCACACCCCCCGGCCCCCCCGAATCGTGCAGAACCCCAATACCGTC-GTCTG
810 AC-ATCATGTG-CGCACACCCCCCGGCCCCCCCG-ATCG-CCGGAACCCCAATGCCGTCGGTCAG
*
18013912 GTTCTTCCGGTGATGCT-C--C---
871 GTTC-TCCGGCGATGCTCCGACGAT
** * * *
18013931 -G-G----GA--AAGAAAAATGTGGCACCAGAGCGCATGCCCAAGCCCAGCTTGTGCTGCCTGCA
1 GGTGCCCCGACGAAGAAAAATACGGCACC--AGCACATGCCCGAGCCCAGCATGTGCTGCC-GCA
* * * *
18013988 ACCCTCGATCGGCGATCCGATCTTAGACTGGGTAATAAACTTCCGTATGCTTAAACTGGGAATGA
63 ACCCTCGGTC--CGGTCCGATCTTAGACTGGG-AATGAAC-TCCGTATGCTTAGACTGGGAATGA
* * * * *
18014053 ACTCCATATGCCTAAGTCAACCCACGAAACTAGCGTACGGGCGCTCAGCCGGTCGGAGGGGCGGG
124 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGG
* * * * * * * * *
18014118 ATGCGTAGGCCTGGGATCG-GCTAGGTCACCCTCTGCATGCTACCGATCATGCTGCCTCAACCCT
189 ATGCGCAAGCCGGGGATCGATC-GGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCACAACCCT
* *
18014182 CGATCCGGTCTGATCTTAGGCTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A-CG
253 CG-TCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCG
* * * *
18014243 AGCGGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAG
317 GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* * * *
18014308 ATGGGTTTAGGTACATCTTCATATTTTTG-CATGCCAATGCCATTTTTATGCCTTGTAAATTCAT
382 GTGGGTTTAGGCACATCTTCATATTTCTGTCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* *
18014372 ACAATAGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACA
447 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
** * * * *
18014437 ATTTTTGAAACCTTTTGCGGTTCGCGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAG
512 ATTTTCAAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTT-GGAAGGAGTTTTGGCCCCAAA
* * *
18014502 CTTGGTAGACGTGATCCTTTTATTTTTGTTGGCGTGCACAAAAAAATTCAGTTAAAAACTCGAAG
576 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* * *
18014567 TGTACAAGATTTTGTGAACGTTTGAAAAAAGTGTCCCCATTTCAGACATTTTAATGGCTACTGGC
641 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* * *
18014632 AGCAAACCTGTAAAATCTTAAATGCTCTTTAAGGAGGTATGAGTTCTCGAGGTTTGATGAGGGAT
706 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* * *
18014697 AGGGGGCCAATATAAGGGACAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GTC
771 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCC
* * * * * *
18014761 CCCCCGACCGTCGAAACCCCAATGCCATCGGTCAGGTTCTCCGGTGATGCTCCGATGAT
836 CCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGAT
** * *
18014820 GGTGCCCCGACGAAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCACAACC
1 GGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
* * * * * * *
18014885 CACAGTCCGGTCTGATTTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATTAACTCCAT
66 CTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
** ** *
18014950 ATGCCTAAGTCAACCCATAAAACGAGCGTGCGGGCATTGAGCCGGCCAGAGGGGCGGGATGCGCA
131 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
* * * * * * *
18015015 AGCCGGGGATCGGTCGGGTCCCCGTCTGCGTGCTACCAATCTTGTTGCTACAACCCTCGATCTGA
196 AGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCACAACCCTCG-TCCGA
* *
18015080 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATG-AA--A-----CGAGCG
260 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCG
* ** *
18015137 GGCACTACGCCGGCCAGAGTGACGGGATATGCAAGCCGTGCATCGATAGGGTGGTAGGTGGGTTT
325 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
*
18015202 AGGCACATCTTCATATTTCTATC-TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
390 AGGCACATCTTCATATTTCTGTCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * * *
18015266 CCTTTAACCCTTCACGTGAAGTTTCATGGCAGGACGACTCGTTTTCTATTTTTCATGATTTTCAA
455 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAA
* *
18015331 AACTTTTTGCGGTTTGGGATTTTTTCAAATTTTTTTGGAAGGTGTTTTGGCCCCAAACTTGGTAG
520 AACTTTTTGCGGTTTGGGATTTTTT-AAAATTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * *
18015396 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAATTGAAGTTTACAAG
584 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* *
18015461 ATTTTATGACCATTTGAAAAAAGTGTTCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
649 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* * * * *
18015526 TGTAAAATCTCAAATGCTCTGTAAGGGGGTATGAATTCTCAAGGTTTGATGACGGATAGGGGGCC
714 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* * * * * *
18015591 AATATAAGGGCAAAGTACCAACACCAATCAAACATCATGTGCGCACGCCCCCTCGGCCCCCCTGA
779 AATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCC-CGGCCCCCCCGA
* ** * *
18015656 TCGCCGGAACCCCAACGCCGTCAATCAAGTTCTCCGACGATGCTCCGACGAT
843 TCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGAT
* * * * * * * * *
18015708 GGTGCCCTGGCAAAGAAAAATATGACACCAGCACATGCCTGAGCCCAGCATCTGCTACTGCAACC
1 GGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
* *
18015773 CTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTACGTATGCTTAGACTGGGAATGAACTCCGT
66 CTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* *
18015838 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGACGCTCAGCCGGCCAGAGGGGCGGGATGTGCA
131 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
* * * * * *
18015903 A-CTCAGGGAT-GGTCGGGTCCCCCTGTGCATGCTACCAATCTTGCTGCCACAACCCTCGATCCG
196 AGC-CGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCACAACCCTCG-TCCG
* * * * ** *
18015966 ATCTGATTTTAGATTGGGAATAAAGTTTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
259 ATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGC
* * * *
18016031 GAGTACTACGCCTGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGGT
324 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* *
18016096 TAGGCACATCTTCATATTTCTGT-GTGACAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
389 TAGGCACATCTTCATATTTCTGTCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
18016160 TCCCCTAAGCCTTCACGTGAAGTTTCATGGCAGGACGACTCATTTTCTATTTTTCACGATTTTCA
454 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCA
* * * *
18016225 AAACTTTTTGGGGTTTGGGATTTTTTCAAATTTTTTCGGAAGGTGTTTTTGCCCCAAACTTGGTA
519 AAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTT-GGAAGGAGTTTTGGCCCCAAACTTGGTA
* * *
18016290 GACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAAATTCAGCAAAAAAATCGAAGTGTAC
583 GACGTGATCCTTGTATTTTTGTTGGCATGCAC--AAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * * * * *
18016355 AAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAAACATTTTAATGGCTATTAGTAGCAA
646 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * * *
18016420 ACCTATAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTTGAGGTTTGATGAGGGTTAGGGG
711 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * **
18016485 GCCAATATAAGGGCCAAATACCAGCACCCATCACACATCATGTGCGCACACCCCCCAG-CCTTCC
776 GCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCC
*
18016549 GATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGAT
841 GATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGAT
* * * * * * *
18016603 GGTGCCCTGGCAAAGAAAAATGCGGCACCAGC-CATGCCTGAGTCCAGCATGTGCTACCGCAACC
1 GGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
* * * *
18016667 TTCGATTCC-GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATTAACTTCG
66 CTCG-GTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* *
18016731 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAGTCGGCCAGAGGGGCGGGATGCCG
130 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG-CG
* * * * * * *
18016796 C-ACCCGGGGATC-AGCTGGGTCCCCCTCTGCATGCTACCGATCTTACTGCCACATCACTCGATC
194 CAAGCCGGGGATCGATC-GGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCACAACCCTCG-TC
* * * * *
18016859 TGATCTGATCTTAGACTGGGAATGAAGTTCGTATGCCTAAGCCAACCGATG-AATGAGTGGGCGG
257 CGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGG
*
18016923 GCGGGCACTACGCCGGCCAGAGAGACGGAATGCGCAAG-CGTGGAAT-GATAGGGTGGTAGGTGG
322 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG-ATCGATAGGGTGGTAGGTGG
* *
18016986 GTTTAGGCACAT-TTCATA-TTCTGT-GTGCCAATGCCA-TTTTATGGCCTGTAACATTCATACA
386 GTTTAGGCACATCTTCATATTTCTGTCATGCCAATGCCATTTTTATGGCTTGTAA-ATTCATACA
*
18017047 ATGGTCCCCTTTAAGCCTTCCACGTGAAGTTTCATGGCAAGGACGACTCATTTTCTA-TTTTCAC
450 ATGGT-CCC-TTAAGCCTT-CACGTGAAGTTTCATGGCAA-GACGACTCGTTTTCTATTTTTCAC
** * * *
18017111 GATTTT-TGAACTTTTTGTGGTTTGGGATTTTTTAATAATTTTTCGGGAAGGAGTTTTGGCCCTA
511 GATTTTCAAAACTTTTTGCGGTTTGGGATTTTTTAA-AATTTTT-TGGAAGGAGTTTTGGCCCCA
* *
18017175 AACCTT-G-AGACGTG-TCCTTGTATTTTT-TTGCCA-GCACACAAAACAAAATTCAGCTATAAA
574 AA-CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG--CAC-AAA-AAAATTCAGCTAAAAA
* * *
18017235 CTCGAAGTGTACAAGATTTTGTGACCAATTG--AAAAGTGTCCCCAATTCAGACA-TTTAATTGC
634 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
*
18017297 TACTCCGGCAAGC-AACC-GTAAAAT-T-AAATGCTCTTT-AGGGGGTGTGAGTTCTCAAGG--T
699 TACT--GGC-AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
18017355 GATGA-GGATA-GGGGCCAATATAAGGGCCAAGTACTCAAGCCACCCATCACACATCATGTGCGC
761 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC-C-AG-CACCCATCACACATCATGTGCGC
** * * * *
18017418 ACACCCCCC-G-CCCGACGATCGTCGGAACCCCAAT-CCGCCGGTCA-G-TCTCAACAAGCGACG
823 ACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTC--C-GGCGATG
*
18017478 CTCCGATGAAT
885 CTCCGACG-AT
* * * * * *
18017489 GAAATGCCTCGACGAATAAAGATACCGCACCAGCTCAATGCCCGAGCCCAGCATGTGCTGTCCGC
1 G--GTGCCCCGACGAAGAAAAATACGGCACCAGCAC-ATGCCCGAGCCCAGCATGTGCTG-CCGC
* * *
18017554 AA-CCTCGGT-CGGTCTGATCTTAGGCTGGGAATGAACTCCGTATGCTTATACT-GGAATGAACT
62 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * * * * *
18017616 TCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCAGGCACTTCAGCCGACCAGAGGGGTGGGAT
127 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC-TCAGCCGGCCAGAGGGGCGGGAT
* * *
18017681 GTGCAAGTCGGGGATCGGTCGGGT--CCCT-TGCGTGCTACCGATCCTGCTGCCACAA-CCTCGT
191 GCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCACAACCCTCGT
* * *
18017742 CCGGTCTGATCTTAGACCTGGGAATGAACTCCGTATGCCT-AGCCAACTGACGAAACGAGCGGGC
256 CCGATCTGATCTTAGA-CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGC
18017806 GGGCTGGCGGGCACTACGCCCGGCCAGAGAGACGGGATGGCGCAAGCCGTGGATCGATAGGGTGG
320 --G--GGCGGGCACTACG-CCGGCCAGAGAGACGGGAT-GCGCAAGCCGTGGATCGATAGGGTGG
* *
18017871 TAGGTGGCTTTGGGCACATCTTCATATTTCTG-CATGCCAATGCCAATTTTTATGGCTTGTAAAT
379 TAGGTGGGTTTAGGCACATCTTCATATTTCTGTCATGCCAATGCC-ATTTTTATGGCTTGTAAAT
* * * *
18017935 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGATGACTCGTTTCCTTTTTTT
443 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* * * ** *
18018000 CATGA-TTTCAAAACTTTTTACGGTTTGGGATTTTTTCAAATTTTTTTAAAAGGTGTTTTGG-CC
508 CACGATTTTCAAAACTTTTTGCGGTTTGGGATTTTTT-AAAATTTTTTGGAAGGAGTTTTGGCCC
* *
18018063 CAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCGT-CACAAAAAAATTCAGCTAAAAACTC
572 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* * *
18018127 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAAACACTTTAATCGCTAC
637 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * *
18018192 TGGCAGCAAACCTATAAAATCTCTAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAG
702 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* *
18018257 GGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCACACATCCTGTGCGCACACCCCCT
767 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCC-
* * * *
18018322 CGGCCCCCCCGATCGCCGGAACCCCAATGTCGTCGGTCAGGTTCTTCGGTGATGCTCCGGCGAT
831 CGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGAT
*
18018386 GGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACC
1 GGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
* * * * *
18018451 CACAGTCCGGTCCGATTTTAGACTGGGAATGAACTCTGTATGCTTAGATTGGGAATGAACTCCGT
66 CTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* * * * * * * *
18018516 ATGCCTAAGTCAACCCACGAAACAAGCGTGCGGACGCTGAGACGGCCAGTGGGGTGGGATGAGTA
131 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
* * * * ** * * *
18018581 AGCCGAGGATCGATCGGGTCCCCCTCTGTGTCCTATCGATCCTGCTATCGCAACCCTCAGCCCGG
196 AGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCACAACCCTC-GTCCGA
* *
18018646 TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGAGCGGGCG
260 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCG
*
18018711 GGCACTACGCCGGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
325 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
*
18018776 AGGCACATCTTCACATTTCT-TCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
390 AGGCACATCTTCATATTTCTGTCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * **
18018840 CCCTTAAGCGTTCACGTGAAGTTTCATGGCAAGACGACTCCTTTTCTATTTTTCACGATTTTGGA
455 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAA
* * * *
18018905 AATTTTTTGCGGTTCGGGATTTTTTTAAAATTTTTTGGAAGGAGTTTTGGCCCCAAAATT-TTAG
520 AACTTTTTGCGGTTTGGGA-TTTTTTAAAATTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* *
18018969 ACGTGATCCTCGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGCACAAG
584 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* * * *
18019034 ACTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAAACACTTTAATGGCTACTGGTAGCAAACC
649 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
18019099 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
714 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* * * *
18019164 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCCTGTGCGCACA-CCCCCAGCCCCCCTGAT
779 AATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCCGAT
*
18019228 CGCCGGAACCCCAATGCCG-CTGGTCAGGTTCTCCGACGATGCTCC-AGCGAT
844 CGCCGGAACCCCAATGCCGTC-GGTCAGGTTCTCCGGCGATGCTCCGA-CGAT
* *** * *
18019279 AGTGCCCCGACGAAGAAAAATGTAGCACCAACACATGCCCGAGCCTAGCATGTGCTG
1 GGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
18019336 TCNNNNNNNN
Statistics
Matches: 6259, Mismatches: 754, Indels: 466
0.84 0.10 0.06
Matches are distributed among these distances:
882 4 0.00
883 50 0.01
884 52 0.01
885 84 0.01
886 519 0.08
887 132 0.02
888 316 0.05
889 156 0.02
890 297 0.05
891 145 0.02
892 218 0.03
893 311 0.05
894 482 0.08
895 875 0.14
896 160 0.03
897 256 0.04
898 117 0.02
899 67 0.01
900 132 0.02
901 47 0.01
902 46 0.01
903 33 0.01
904 74 0.01
905 96 0.02
906 103 0.02
907 30 0.00
908 27 0.00
909 61 0.01
910 25 0.00
911 37 0.01
912 72 0.01
913 39 0.01
914 92 0.01
915 38 0.01
916 73 0.01
917 493 0.08
918 113 0.02
919 186 0.03
920 31 0.00
921 90 0.01
922 31 0.00
923 19 0.00
924 30 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (894 bp):
GGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
CTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
AGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCACAACCCTCGTCCGAT
CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCGG
GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
GGCACATCTTCATATTTCTGTCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAA
ACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
TATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCCGATCG
CCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGAT
Found at i:18024457 original size:29 final size:28
Alignment explanation
Indices: 18024425--18024493 Score: 87
Period size: 25 Copynumber: 2.6 Consensus size: 28
18024415 ATCAACAATG
18024425 GATGAAAAATGAGAAAAGAAAAAAAAGAT
1 GATGAAAAATGAGAAAAGAAAAAAAA-AT
18024454 GATGAAAAA--AG-AAA-AAAAAAAAAT
1 GATGAAAAATGAGAAAAGAAAAAAAAAT
18024478 GA-G-AAAATGAGAAAAG
1 GATGAAAAATGAGAAAAG
18024494 GAGATTCAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 11
0.77 0.00 0.23
Matches are distributed among these distances:
22 4 0.11
23 1 0.03
24 6 0.17
25 11 0.31
26 3 0.08
27 2 0.06
29 9 0.25
ACGTcount: A:0.71, C:0.00, G:0.20, T:0.09
Consensus pattern (28 bp):
GATGAAAAATGAGAAAAGAAAAAAAAAT
Found at i:18024484 original size:22 final size:22
Alignment explanation
Indices: 18024429--18024484 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 22
18024419 ACAATGGATG
18024429 AAAAATGAG-AAAAGAAAAAAA
1 AAAAATGAGAAAAAGAAAAAAA
**
18024450 AGATGATGA-AAAAAGAAAAAAA
1 A-AAAATGAGAAAAAGAAAAAAA
18024472 AAAAATGAGAAAA
1 AAAAATGAGAAAA
18024485 TGAGAAAAGG
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
21 6 0.21
22 22 0.79
ACGTcount: A:0.77, C:0.00, G:0.16, T:0.07
Consensus pattern (22 bp):
AAAAATGAGAAAAAGAAAAAAA
Found at i:18024492 original size:22 final size:21
Alignment explanation
Indices: 18024429--18024492 Score: 67
Period size: 22 Copynumber: 3.0 Consensus size: 21
18024419 ACAATGGATG
18024429 AAAAATGAGAAAAGA-AAAAA
1 AAAAATGAGAAAAGAGAAAAA
* * *
18024449 AAGATGATGAAAAAAGAAAAAAA
1 AA-A-AATGAGAAAAGAGAAAAA
18024472 AAAAATGAGAAAATGAGAAAA
1 AAAAATGAGAAAA-GAGAAAA
18024493 GGAGATTCAA
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
20 2 0.06
21 9 0.26
22 17 0.49
23 7 0.20
ACGTcount: A:0.75, C:0.00, G:0.17, T:0.08
Consensus pattern (21 bp):
AAAAATGAGAAAAGAGAAAAA
Found at i:18025767 original size:41 final size:41
Alignment explanation
Indices: 18025697--18025859 Score: 193
Period size: 41 Copynumber: 4.1 Consensus size: 41
18025687 ATGATTGTTA
18025697 AGGAGCAATTTACATTTCCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTAC-TTTCCAAAGTCGTGGTGCCTCTGTTTAG
*
18025739 AGGAGCAATTTACTTTCCAAAGTTGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAG
18025780 AGGAG---------TTCCAAAGTCGTGGT-CCTCTGTTTAG
1 AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAG
* * *
18025811 AGGAGCAATTTATGTTTCTCAAAGTCGTTGAGCCTCTGTTTAG
1 AGGAGCAATTTA-CTTTC-CAAAGTCGTGGTGCCTCTGTTTAG
18025854 AGGAGC
1 AGGAGC
18025860 TTTGGTAAAA
Statistics
Matches: 105, Mismatches: 4, Indels: 23
0.80 0.03 0.17
Matches are distributed among these distances:
31 16 0.15
32 14 0.13
41 35 0.33
42 23 0.22
43 17 0.16
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.34
Consensus pattern (41 bp):
AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAG
Found at i:18025807 original size:31 final size:32
Alignment explanation
Indices: 18025753--18025815 Score: 110
Period size: 31 Copynumber: 2.0 Consensus size: 32
18025743 GCAATTTACT
*
18025753 TTCCAAAGTTGTGGTGCCTCTGTTTAGAGGAG
1 TTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAG
18025785 TTCCAAAGTCGTGGT-CCTCTGTTTAGAGGAG
1 TTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAG
18025816 CAATTTATGT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
31 16 0.53
32 14 0.47
ACGTcount: A:0.19, C:0.17, G:0.30, T:0.33
Consensus pattern (32 bp):
TTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAG
Found at i:18025872 original size:1 final size:1
Alignment explanation
Indices: 18025866--18025937 Score: 63
Period size: 1 Copynumber: 72.0 Consensus size: 1
18025856 GAGCTTTGGT
* * * * * * * *
18025866 AAAAAAAAAAACAAAAAAACAAAAAAATAAAAAAACACAAAAAAAACACAAAAAACAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
*
18025931 CAAAAAA
1 AAAAAAA
18025938 TGACAATGTT
Statistics
Matches: 53, Mismatches: 18, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 53 1.00
ACGTcount: A:0.88, C:0.11, G:0.00, T:0.01
Consensus pattern (1 bp):
A
Found at i:18025883 original size:9 final size:9
Alignment explanation
Indices: 18025869--18025937 Score: 88
Period size: 9 Copynumber: 7.7 Consensus size: 9
18025859 CTTTGGTAAA
18025869 AAAAAAAAC
1 AAAAAAAAC
18025878 -AAAAAAAC
1 AAAAAAAAC
18025886 AAAAAAATA-
1 AAAAAAA-AC
*
18025895 AAAAAACAC
1 AAAAAAAAC
18025904 AAAAAAAAC
1 AAAAAAAAC
*
18025913 ACAAAAAAC
1 AAAAAAAAC
18025922 AAAAAAAAAC
1 -AAAAAAAAC
18025932 AAAAAA
1 AAAAAA
18025938 TGACAATGTT
Statistics
Matches: 52, Mismatches: 4, Indels: 8
0.81 0.06 0.12
Matches are distributed among these distances:
8 9 0.17
9 34 0.65
10 9 0.17
ACGTcount: A:0.87, C:0.12, G:0.00, T:0.01
Consensus pattern (9 bp):
AAAAAAAAC
Found at i:18025891 original size:18 final size:18
Alignment explanation
Indices: 18025868--18025937 Score: 99
Period size: 19 Copynumber: 3.9 Consensus size: 18
18025858 GCTTTGGTAA
18025868 AAAAAAAAACAAAAAAAC
1 AAAAAAAAACAAAAAAAC
*
18025886 --AAAAAAATAAAAAAAC
1 AAAAAAAAACAAAAAAAC
18025902 ACAAAAAAAACACAAAAAAC
1 A-AAAAAAAACA-AAAAAAC
18025922 AAAAAAAAACAAAAAA
1 AAAAAAAAACAAAAAA
18025938 TGACAATGTT
Statistics
Matches: 46, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
16 15 0.33
18 5 0.11
19 18 0.39
20 8 0.17
ACGTcount: A:0.87, C:0.11, G:0.00, T:0.01
Consensus pattern (18 bp):
AAAAAAAAACAAAAAAAC
Found at i:18025909 original size:28 final size:29
Alignment explanation
Indices: 18025865--18025937 Score: 98
Period size: 29 Copynumber: 2.6 Consensus size: 29
18025855 GGAGCTTTGG
*
18025865 TAAAAAAAA-AAACAAAAAAACAAAAAA-A
1 TAAAAAAAACAAA-AAAAACACAAAAAACA
18025893 TAAAAAAACACAAAAAAAACACAAAAAACA
1 TAAAAAAA-ACAAAAAAAACACAAAAAACA
18025923 -AAAAAAAACAAAAAA
1 TAAAAAAAACAAAAAA
18025938 TGACAATGTT
Statistics
Matches: 41, Mismatches: 1, Indels: 6
0.85 0.02 0.12
Matches are distributed among these distances:
28 16 0.39
29 21 0.51
30 4 0.10
ACGTcount: A:0.86, C:0.11, G:0.00, T:0.03
Consensus pattern (29 bp):
TAAAAAAAACAAAAAAAACACAAAAAACA
Found at i:18025917 original size:37 final size:37
Alignment explanation
Indices: 18025867--18025937 Score: 108
Period size: 37 Copynumber: 1.9 Consensus size: 37
18025857 AGCTTTGGTA
*
18025867 AAAAAAAAAACAAAAAAACAAAAAAATA-AAAAAACAC
1 AAAAAAAAAAC-AAAAAACAAAAAAAAACAAAAAACAC
*
18025904 AAAAAAAACACAAAAAACAAAAAAAAACAAAAAA
1 AAAAAAAAAACAAAAAACAAAAAAAAACAAAAAA
18025938 TGACAATGTT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
36 15 0.48
37 16 0.52
ACGTcount: A:0.87, C:0.11, G:0.00, T:0.01
Consensus pattern (37 bp):
AAAAAAAAAACAAAAAACAAAAAAAAACAAAAAACAC
Found at i:18025937 original size:8 final size:8
Alignment explanation
Indices: 18025866--18025928 Score: 74
Period size: 8 Copynumber: 7.5 Consensus size: 8
18025856 GAGCTTTGGT
18025866 AAAA-AAA
1 AAAACAAA
18025873 AAAACAAA
1 AAAACAAA
18025881 AAAACAAA
1 AAAACAAA
*
18025889 AAAATAAAA
1 AAAA-CAAA
18025898 AAACACAAAA
1 AAA-AC-AAA
18025908 AAAACACAA
1 AAAACA-AA
18025917 AAAACAAA
1 AAAACAAA
18025925 AAAA
1 AAAA
18025929 AACAAAAAAT
Statistics
Matches: 49, Mismatches: 2, Indels: 9
0.82 0.03 0.15
Matches are distributed among these distances:
7 4 0.08
8 22 0.45
9 16 0.33
10 7 0.14
ACGTcount: A:0.87, C:0.11, G:0.00, T:0.02
Consensus pattern (8 bp):
AAAACAAA
Found at i:18025943 original size:10 final size:10
Alignment explanation
Indices: 18025866--18025937 Score: 73
Period size: 10 Copynumber: 7.6 Consensus size: 10
18025856 GAGCTTTGGT
18025866 AAAAAAAAA-
1 AAAAAAAAAC
18025875 AACAAAAAAAC
1 AA-AAAAAAAC
*
18025886 --AAAAAAAT
1 AAAAAAAAAC
*
18025894 AAAAAAACAC
1 AAAAAAAAAC
18025904 -AAAAAAAAC
1 AAAAAAAAAC
*
18025913 -ACAAAAAAC
1 AAAAAAAAAC
18025922 AAAAAAAAAC
1 AAAAAAAAAC
18025932 AAAAAA
1 AAAAAA
18025938 TGACAATGTT
Statistics
Matches: 52, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
8 7 0.13
9 18 0.35
10 27 0.52
ACGTcount: A:0.88, C:0.11, G:0.00, T:0.01
Consensus pattern (10 bp):
AAAAAAAAAC
Found at i:18027183 original size:30 final size:30
Alignment explanation
Indices: 18027149--18027205 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
18027139 CAAGTCTTTT
*
18027149 TTTCTTT-TTTTTTGAATTTTTTTATTTTCA
1 TTTCTTTGTTTTTT-AATTTATTTATTTTCA
*
18027179 TTTCTTTGTTTTTTTATTTATTTATTT
1 TTTCTTTGTTTTTTAATTTATTTATTT
18027206 ATTTATTAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 18 0.75
31 6 0.25
ACGTcount: A:0.12, C:0.05, G:0.04, T:0.79
Consensus pattern (30 bp):
TTTCTTTGTTTTTTAATTTATTTATTTTCA
Found at i:18027285 original size:18 final size:17
Alignment explanation
Indices: 18027247--18027311 Score: 69
Period size: 18 Copynumber: 3.6 Consensus size: 17
18027237 TTTATCTTTA
*
18027247 TTTTATTTTCATTT-TTG
1 TTTTATTTTC-TTTATTT
18027264 TTTTACTTTTCTTTATTT
1 TTTTA-TTTTCTTTATTT
*
18027282 TTTTATTTTTATTTATTT
1 TTTTA-TTTTCTTTATTT
18027300 TTTTATTATTCT
1 TTTTATT-TTCT
18027312 GTTTTCTTTA
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
17 10 0.24
18 31 0.76
ACGTcount: A:0.14, C:0.06, G:0.02, T:0.78
Consensus pattern (17 bp):
TTTTATTTTCTTTATTT
Found at i:18027288 original size:8 final size:8
Alignment explanation
Indices: 18027264--18027306 Score: 50
Period size: 9 Copynumber: 4.9 Consensus size: 8
18027254 TTCATTTTTG
18027264 TTTTACTTT
1 TTTTA-TTT
18027273 TCTTTATTT
1 T-TTTATTT
18027282 TTTTATTTT
1 TTTTA-TTT
18027291 TATTTATTT
1 T-TTTATTT
18027300 TTTTATT
1 TTTTATT
18027307 ATTCTGTTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
8 10 0.32
9 13 0.42
10 8 0.26
ACGTcount: A:0.14, C:0.05, G:0.00, T:0.81
Consensus pattern (8 bp):
TTTTATTT
Found at i:18027308 original size:11 final size:10
Alignment explanation
Indices: 18027243--18027309 Score: 57
Period size: 11 Copynumber: 6.6 Consensus size: 10
18027233 TCTTTTTATC
18027243 TTTATTTTATT
1 TTTATTTT-TT
*
18027254 TTCATTTTTGT
1 TTTATTTTT-T
* *
18027265 TTTACTTTTC
1 TTTATTTTTT
18027275 TTTA--TTTT
1 TTTATTTTTT
*
18027283 TTTATTTTTA
1 TTTATTTTTT
18027293 TTTATTTTTT
1 TTTATTTTTT
18027303 TATTATT
1 T-TTATT
18027310 CTGTTTTCTT
Statistics
Matches: 45, Mismatches: 7, Indels: 8
0.75 0.12 0.13
Matches are distributed among these distances:
8 7 0.16
10 18 0.40
11 20 0.44
ACGTcount: A:0.15, C:0.04, G:0.01, T:0.79
Consensus pattern (10 bp):
TTTATTTTTT
Found at i:18027474 original size:118 final size:115
Alignment explanation
Indices: 18027344--18027560 Score: 355
Period size: 118 Copynumber: 1.9 Consensus size: 115
18027334 AAATTTCCAA
*
18027344 AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAGTTTAAAAAAAAA
1 AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTT-AAAAAAAA
*
18027409 GGTATTTTTGAGG-AAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
65 --TACTTTTG-GGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
**
18027462 AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCCAAAAAAT
1 AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTAAAAAAAAT
18027527 ACTTTTGGGAAAAAGTTGAAAGTATCAATTTTCC
66 ACTTTTGGGAAAAAGTTGAAAGTATCAATTTTCC
18027561 CTACACAAGA
Statistics
Matches: 94, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
114 2 0.02
115 31 0.33
117 6 0.06
118 55 0.59
ACGTcount: A:0.46, C:0.07, G:0.12, T:0.34
Consensus pattern (115 bp):
AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTAAAAAAAAT
ACTTTTGGGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
Done.