Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19866354
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 74000 characters in sequence are not A, C, G, or T
File 11 of 100
Found at i:2890589 original size:117 final size:116
Alignment explanation
Indices: 2890448--2890684 Score: 336
Period size: 117 Copynumber: 2.0 Consensus size: 116
2890438 AAATTCATTA
2890448 AAAAAACATTTTTTAGGAAAAGTTGAAAGTACCAATTTTTCTTGA-AA-ATAAAATTTTTAAAAA
1 AAAAAACATTTTTTAGGAAAAGTTGAAAGTACCAATTTTTCTTGACAACA-AAAATTTTTAAAAA
*
2890511 TATATTTTTGAAAAAAAATTGAAAGTATCAATTTATC-TCAAAAATAAAATTTTT
65 -ATATTTTT-AAAAAAAATTGAAAGTATCAATTT-TCTTCAAAAATAAAAATTTT
* * *
2890565 AAAAAATATTTTTTAGGAAAAGTTGAAAGTATCAATTTTTCTTGACAACAAAAATTTTTTAAAAA
1 AAAAAACATTTTTTAGGAAAAGTTGAAAGTACCAATTTTTCTTGACAACAAAAATTTTTAAAAAA
** * * *
2890630 TATTTTTAGGAAAAGTTGAAAGTATCAATTTTCTTTAAAAGTAAAAATTTT
66 TATTTTTAAAAAAAATTGAAAGTATCAATTTTCTTCAAAAATAAAAATTTT
2890681 AAAA
1 AAAA
2890685 TAAAAATTTC
Statistics
Matches: 108, Mismatches: 9, Indels: 7
0.87 0.07 0.06
Matches are distributed among these distances:
115 2 0.02
116 39 0.36
117 51 0.47
118 15 0.14
119 1 0.01
ACGTcount: A:0.48, C:0.05, G:0.09, T:0.38
Consensus pattern (116 bp):
AAAAAACATTTTTTAGGAAAAGTTGAAAGTACCAATTTTTCTTGACAACAAAAATTTTTAAAAAA
TATTTTTAAAAAAAATTGAAAGTATCAATTTTCTTCAAAAATAAAAATTTT
Found at i:2890602 original size:58 final size:59
Alignment explanation
Indices: 2890448--2890684 Score: 295
Period size: 59 Copynumber: 4.1 Consensus size: 59
2890438 AAATTCATTA
* * *
2890448 AAAAAACATTTTTTAGGAAAAGTTGAAAGTACCAATTTTTC-TTGAAAATAAAATTTTT
1 AAAAAATATTTTTTAGGAAAAGTTGAAAGTATCAATTTTTCTTTAAAAATAAAATTTTT
* ** * * *
2890506 AAAAATATATTTTTGAAAAAAAATTGAAAGTATCAATTTATC-TCAAAAATAAAATTTTT
1 AAAAA-ATATTTTTTAGGAAAAGTTGAAAGTATCAATTTTTCTTTAAAAATAAAATTTTT
* *
2890565 AAAAAATATTTTTTAGGAAAAGTTGAAAGTATCAATTTTTCTTGACAACA-AAAATTTTT
1 AAAAAATATTTTTTAGGAAAAGTTGAAAGTATCAATTTTTCTTTA-AAAATAAAATTTTT
* * *
2890624 TAAAAATA-TTTTTAGGAAAAGTTGAAAGTATCAA-TTTTCTTTAAAAGTAAAAATTTT
1 AAAAAATATTTTTTAGGAAAAGTTGAAAGTATCAATTTTTCTTTAAAAATAAAATTTTT
2890681 AAAA
1 AAAA
2890685 TAAAAATTTC
Statistics
Matches: 153, Mismatches: 22, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
56 2 0.01
57 19 0.12
58 62 0.41
59 67 0.44
60 3 0.02
ACGTcount: A:0.48, C:0.05, G:0.09, T:0.38
Consensus pattern (59 bp):
AAAAAATATTTTTTAGGAAAAGTTGAAAGTATCAATTTTTCTTTAAAAATAAAATTTTT
Found at i:2890690 original size:14 final size:15
Alignment explanation
Indices: 2890663--2890700 Score: 60
Period size: 15 Copynumber: 2.5 Consensus size: 15
2890653 ATCAATTTTC
2890663 TTTAAAAGTAAAAAT
1 TTTAAAAGTAAAAAT
2890678 TTTAAAA-TAAAAAT
1 TTTAAAAGTAAAAAT
2890692 TTCTAAAAG
1 TT-TAAAAG
2890701 CATTTTGAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 9 0.43
15 12 0.57
ACGTcount: A:0.58, C:0.03, G:0.05, T:0.34
Consensus pattern (15 bp):
TTTAAAAGTAAAAAT
Found at i:2890715 original size:71 final size:72
Alignment explanation
Indices: 2890614--2890765 Score: 168
Period size: 71 Copynumber: 2.1 Consensus size: 72
2890604 TCTTGACAAC
* ** * * ** * *
2890614 AAAAAT-TTTTTAAAAATATTTTTAGGAAAAGTTGAAAGTATCAATTT-TCTTTAAAAGTAAAAA
1 AAAAATATTTCTAAAAGCATTTTGAGAAAAAGTTTGAAGTACCAATTTTTC-TTAAAAATAAAAA
2890677 TT-TTAAA
65 TTATTAAA
*
2890684 ATAAAA-ATTTCTAAAAGCATTTTGAGAAAAAGTTTGAATTACCAATTTTTCTTAAAAATAAAAA
1 A-AAAATATTTCTAAAAGCATTTTGAGAAAAAGTTTGAAGTACCAATTTTTCTTAAAAATAAAAA
2890748 TTATTAAA
65 TTATTAAA
2890756 AAAAATATTT
1 AAAAATATTT
2890766 TTAAGGAAAA
Statistics
Matches: 67, Mismatches: 10, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
70 1 0.01
71 54 0.81
72 12 0.18
ACGTcount: A:0.50, C:0.05, G:0.07, T:0.38
Consensus pattern (72 bp):
AAAAATATTTCTAAAAGCATTTTGAGAAAAAGTTTGAAGTACCAATTTTTCTTAAAAATAAAAAT
TATTAAA
Found at i:2894731 original size:28 final size:29
Alignment explanation
Indices: 2894700--2894778 Score: 87
Period size: 30 Copynumber: 2.9 Consensus size: 29
2894690 GATGAAAAAA
* *
2894700 GATG-AAAAAGAGAAAGAGAAAAAAAATG
1 GATGAAAAAAGAGAAAAACAAAAAAAATG
2894728 GATGAAAAAAAGAGAAAAACAAAAAAAA--
1 GATG-AAAAAAGAGAAAAACAAAAAAAATG
*
2894756 -ATAAAAAAAGAGAAAAA-AAAAAA
1 GATGAAAAAAGAGAAAAACAAAAAA
2894779 GATTCAAATT
Statistics
Matches: 46, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
25 6 0.13
26 14 0.30
27 2 0.04
28 4 0.09
30 20 0.43
ACGTcount: A:0.77, C:0.01, G:0.16, T:0.05
Consensus pattern (29 bp):
GATGAAAAAAGAGAAAAACAAAAAAAATG
Found at i:2894761 original size:26 final size:27
Alignment explanation
Indices: 2894694--2894778 Score: 97
Period size: 26 Copynumber: 3.1 Consensus size: 27
2894684 ACAATAGATG
2894694 AAAAAAGATG--AAAAAGAGAAAGAGAAA
1 AAAAAAGATGAAAAAAAGAGAAA-A-AAA
*
2894721 AAAAATGGATGAAAAAAAGAGAAAAACAA
1 AAAAA-AGATGAAAAAAAGAGAAAAA-AA
2894750 AAAAAA-AT-AAAAAAAGAGAAAAAAA
1 AAAAAAGATGAAAAAAAGAGAAAAAAA
2894775 AAAA
1 AAAA
2894779 GATTCAAATT
Statistics
Matches: 52, Mismatches: 2, Indels: 10
0.81 0.03 0.16
Matches are distributed among these distances:
25 6 0.12
26 15 0.29
27 7 0.13
28 5 0.10
29 8 0.15
30 11 0.21
ACGTcount: A:0.79, C:0.01, G:0.15, T:0.05
Consensus pattern (27 bp):
AAAAAAGATGAAAAAAAGAGAAAAAAA
Found at i:2894762 original size:38 final size:38
Alignment explanation
Indices: 2894690--2894764 Score: 89
Period size: 38 Copynumber: 1.9 Consensus size: 38
2894680 ATTAACAATA
* * *
2894690 GATGAAAAAAGATGAAAAAGAGAAAGAGAAAAAAAATG
1 GATGAAAAAAGATGAAAAACAGAAAAAAAAAAAAAATG
*
2894728 GATGAAAAAAAGA-GAAAAACAAAAAAAAATAAAAAAA
1 GATG-AAAAAAGATGAAAAACAGAAAAAAA-AAAAAAA
2894765 GAGAAAAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
38 16 0.52
39 15 0.48
ACGTcount: A:0.75, C:0.01, G:0.17, T:0.07
Consensus pattern (38 bp):
GATGAAAAAAGATGAAAAACAGAAAAAAAAAAAAAATG
Found at i:2895650 original size:20 final size:21
Alignment explanation
Indices: 2895622--2895669 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
2895612 AAATTTATCG
*
2895622 AATGTGAATCTTCGAA-TTCA
1 AATGAGAATCTTCGAATTTCA
* *
2895642 AATGAGAATTTTTGAATTTCA
1 AATGAGAATCTTCGAATTTCA
2895663 AATGAGA
1 AATGAGA
2895670 TTTTTTGAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
20 13 0.54
21 11 0.46
ACGTcount: A:0.40, C:0.08, G:0.17, T:0.35
Consensus pattern (21 bp):
AATGAGAATCTTCGAATTTCA
Found at i:2895664 original size:21 final size:21
Alignment explanation
Indices: 2895638--2895677 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
2895628 AATCTTCGAA
2895638 TTCAAATGAGAATTTTTGAAT
1 TTCAAATGAGAATTTTTGAAT
*
2895659 TTCAAATGAGATTTTTTGA
1 TTCAAATGAGAATTTTTGA
2895678 GGTGTGAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.35, C:0.05, G:0.15, T:0.45
Consensus pattern (21 bp):
TTCAAATGAGAATTTTTGAAT
Found at i:2895861 original size:43 final size:42
Alignment explanation
Indices: 2895771--2895877 Score: 108
Period size: 42 Copynumber: 2.5 Consensus size: 42
2895761 AATAAGAAGC
* * * *
2895771 TTTAAACTTTTCGATGTGAATCTTCGAGTTCAAACGAAAAAA
1 TTTAAACTTTTGGATGTGAATCTCCAAATTCAAACGAAAAAA
* * * *
2895813 GTTAAACTTTTGGATGTGAATCTCCAAAATTCAAATGAGAATA
1 TTTAAACTTTTGGATGTGAATCTCC-AAATTCAAACGAAAAAA
* *
2895856 TTTAAA-TGTTGGATGCGAATCT
1 TTTAAACTTTTGGATGTGAATCT
2895878 TGCAATTTAC
Statistics
Matches: 53, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
42 36 0.68
43 17 0.32
ACGTcount: A:0.36, C:0.12, G:0.17, T:0.35
Consensus pattern (42 bp):
TTTAAACTTTTGGATGTGAATCTCCAAATTCAAACGAAAAAA
Found at i:2896238 original size:44 final size:44
Alignment explanation
Indices: 2896095--2896275 Score: 220
Period size: 44 Copynumber: 4.1 Consensus size: 44
2896085 CGAGAAGCAA
* * *
2896095 TTTATTTTTTCAAAAGTTG-TAAGCCTCTGATTAGAGGAGCCTTG
1 TTTATTTTTTC-AAAGTCGTTAAGCCTCTAATTAGAGGAGCTTTG
* *
2896139 TTTATTTTTTTTAAAGTTGTTAAGCCTCTAATTAGAGGAGCTTTG
1 TTTA-TTTTTTCAAAGTCGTTAAGCCTCTAATTAGAGGAGCTTTG
* **
2896184 TTTATTTTTTCAAAGTCGTTGAGCCTCTGTTTAGAGGAGCTTTG
1 TTTATTTTTTCAAAGTCGTTAAGCCTCTAATTAGAGGAGCTTTG
* * * * *
2896228 TTTATTTTTTCAAAGTCATTGAGCTTCTATTTAGAGGAGTTTTG
1 TTTATTTTTTCAAAGTCGTTAAGCCTCTAATTAGAGGAGCTTTG
2896272 TTTA
1 TTTA
2896276 CTTGTTAAAA
Statistics
Matches: 123, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
44 90 0.73
45 33 0.27
ACGTcount: A:0.23, C:0.11, G:0.19, T:0.47
Consensus pattern (44 bp):
TTTATTTTTTCAAAGTCGTTAAGCCTCTAATTAGAGGAGCTTTG
Found at i:2896498 original size:5 final size:5
Alignment explanation
Indices: 2896488--2896536 Score: 55
Period size: 5 Copynumber: 9.6 Consensus size: 5
2896478 TAGGTATTTG
* *
2896488 TTATT TTATT TT-TT TTATT TTTTT TTATTT TTTTT TATATT TTATT TTA
1 TTATT TTATT TTATT TTATT TTATT TTA-TT TTATT T-TATT TTATT TTA
2896537 GGATATCAGC
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
4 4 0.11
5 25 0.68
6 8 0.22
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (5 bp):
TTATT
Found at i:2896505 original size:9 final size:9
Alignment explanation
Indices: 2896491--2896535 Score: 56
Period size: 9 Copynumber: 5.0 Consensus size: 9
2896481 GTATTTGTTA
2896491 TTTTATTTT
1 TTTTATTTT
2896500 TTTTATTTTT
1 TTTTA-TTTT
2896510 TTTTATTTT
1 TTTTATTTT
* *
2896519 TTTT-TATA
1 TTTTATTTT
2896527 TTTTATTTT
1 TTTTATTTT
2896536 AGGATATCAG
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
8 6 0.20
9 15 0.50
10 9 0.30
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (9 bp):
TTTTATTTT
Found at i:2896528 original size:22 final size:21
Alignment explanation
Indices: 2896488--2896536 Score: 66
Period size: 22 Copynumber: 2.4 Consensus size: 21
2896478 TAGGTATTTG
2896488 TTATTTTA--TTTTTTTTATT
1 TTATTTTATTTTTTTTTTATT
*
2896507 TTTTTTTATTTTTTTTTATATT
1 TTATTTTATTTTTTTTT-TATT
2896529 TTATTTTA
1 TTATTTTA
2896537 GGATATCAGC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 7 0.28
21 7 0.28
22 11 0.44
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (21 bp):
TTATTTTATTTTTTTTTTATT
Found at i:2896536 original size:12 final size:10
Alignment explanation
Indices: 2896491--2896536 Score: 67
Period size: 10 Copynumber: 4.5 Consensus size: 10
2896481 GTATTTGTTA
2896491 TTTTA-TTTT
1 TTTTATTTTT
2896500 TTTTATTTTT
1 TTTTATTTTT
2896510 TTTTATTTTT
1 TTTTATTTTT
2896520 TTTTATATTTT
1 TTTTAT-TTTT
2896531 ATTTTA
1 -TTTTA
2896537 GGATATCAGC
Statistics
Matches: 34, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
9 5 0.15
10 20 0.59
11 4 0.12
12 5 0.15
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (10 bp):
TTTTATTTTT
Found at i:2896917 original size:31 final size:31
Alignment explanation
Indices: 2896882--2896942 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
2896872 AGTTTTCATT
2896882 GAATTTTTCGACGTCGGTTGAATTTTTCGAC
1 GAATTTTTCGACGTCGGTTGAATTTTTCGAC
* * * *
2896913 GAATTTTTCTATGTTGTTTGAATTTTTCGA
1 GAATTTTTCGACGTCGGTTGAATTTTTCGA
2896943 TAGGGAATTC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.20, C:0.11, G:0.20, T:0.49
Consensus pattern (31 bp):
GAATTTTTCGACGTCGGTTGAATTTTTCGAC
Found at i:2897593 original size:17 final size:18
Alignment explanation
Indices: 2897563--2897596 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
2897553 TGAAAGTATC
*
2897563 AATTTTTCTTAAAAATAA
1 AATTTTTCTAAAAAATAA
2897581 AATTTTT-TAAAAAATA
1 AATTTTTCTAAAAAATA
2897597 GTTTTGAGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (18 bp):
AATTTTTCTAAAAAATAA
Found at i:2897622 original size:59 final size:61
Alignment explanation
Indices: 2897485--2897822 Score: 228
Period size: 61 Copynumber: 5.5 Consensus size: 61
2897475 CATTTTTAAG
* * *
2897485 GAAAAA-TTAAAAGTATTAATTTTTCTTGAAAATAAAATTTTCAAAAAAAATATATTTTGA
1 GAAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAATTTTCAAAAAAAATATATTTTGA
* ** *
2897545 GGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAATTTT-TTAAAAAATA-GTTTTGA
1 GAAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAATTTTCAAAAAAAATATATTTTGA
* * * *
2897604 GAAAAAGTTGAACGTATCAATTTTTCTTAAAAATAAAATTTCTAAAATAAAAATTTTCAAAAACA
1 GAAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAATTT-TCAAA-AAAAA---T---ATA-T
*
2897669 TTT-T
57 TTTGA
** ** * * * *
2897673 GAGAAAAAGTTGAAAGTATCAA-TTTTCTTTGAAATTAAAA-TTTCAGAAAAAA-GTATTTTGA
1 GA-AAAAGTTGAAA-GTATCAATTTTTC-TTAAAAATAAAATTTTCAAAAAAAATATATTTTGA
* * * * * *
2897734 GTAAAAGTTGGAAGTA-CAAATTTTTCTTAAAAATAAAAATTATCAAGAAAAACAT-TTTTAA
1 GAAAAAGTTGAAAGTATC-AATTTTTCTTAAAAAT-AAAATTTTCAAAAAAAATATATTTTGA
*
2897795 GGAAAAA-TTAAAAGTATCAATTTTTCTT
1 -GAAAAAGTTGAAAGTATCAATTTTTCTT
2897823 GTATAAAATC
Statistics
Matches: 214, Mismatches: 41, Indels: 45
0.71 0.14 0.15
Matches are distributed among these distances:
58 1 0.00
59 56 0.26
60 34 0.16
61 66 0.31
62 12 0.06
65 1 0.00
68 6 0.03
69 5 0.02
70 16 0.07
71 17 0.08
ACGTcount: A:0.48, C:0.06, G:0.10, T:0.36
Consensus pattern (61 bp):
GAAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAATTTTCAAAAAAAATATATTTTGA
Found at i:2897682 original size:71 final size:73
Alignment explanation
Indices: 2897574--2897716 Score: 202
Period size: 71 Copynumber: 2.0 Consensus size: 73
2897564 ATTTTTCTTA
* * *
2897574 AAAATAAAATTTTTTAAAAAATAGTTTTGAGAAAAAGTTGAACGTATCAATTTT-TCTTAAAAAT
1 AAAATAAAATATTTTAAAAAACAGTTTTGAGAAAAAGTTGAAAGTATCAATTTTCT-TTAAAAAT
2897638 AAAATTTCT
65 AAAATTTCT
* * *
2897647 AAAATAAAA-ATTTTCAAAAACA-TTTTGAGAAAAAGTTGAAAGTATCAATTTTCTTTGAAATTA
1 AAAATAAAATATTTTAAAAAACAGTTTTGAGAAAAAGTTGAAAGTATCAATTTTCTTTAAAAATA
2897710 AAATTTC
66 AAATTTC
2897717 AGAAAAAAGT
Statistics
Matches: 63, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
71 43 0.68
72 11 0.17
73 9 0.14
ACGTcount: A:0.48, C:0.06, G:0.08, T:0.37
Consensus pattern (73 bp):
AAAATAAAATATTTTAAAAAACAGTTTTGAGAAAAAGTTGAAAGTATCAATTTTCTTTAAAAATA
AAATTTCT
Found at i:2897687 original size:130 final size:130
Alignment explanation
Indices: 2897538--2897771 Score: 341
Period size: 130 Copynumber: 1.8 Consensus size: 130
2897528 AAAAAAATAT
* ***
2897538 ATTTTGAGGAAAAGTTGAAAGTATCAATTTT-TCTTAAAAATAAAATTTTTTAAAAAA-TAGTTT
1 ATTTTGAGAAAAAGTTGAAAGTATCAATTTTCT-TTAAAAATAAAATTTCAGAAAAAAGTA-TTT
2897601 TGAGAAAAAGTT-GAACGTATC-AATTTTTCTTAAAAATAAAATTTCTAAAATAAAAATTTTCAA
64 TGAGAAAAAGTTGGAA-GTA-CAAATTTTTCTTAAAAATAAAATTTCTAAAATAAAAATTTTCAA
2897664 AAAC
127 AAAC
* *
2897668 ATTTTGAGAAAAAGTTGAAAGTATCAATTTTCTTTGAAATTAAAATTTCAGAAAAAAGTATTTTG
1 ATTTTGAGAAAAAGTTGAAAGTATCAATTTTCTTTAAAAATAAAATTTCAGAAAAAAGTATTTTG
*
2897733 AGTAAAAGTTGGAAGTACAAATTTTTCTTAAAAATAAAA
66 AGAAAAAGTTGGAAGTACAAATTTTTCTTAAAAATAAAA
2897772 ATTATCAAGA
Statistics
Matches: 93, Mismatches: 7, Indels: 8
0.86 0.06 0.07
Matches are distributed among these distances:
129 1 0.01
130 86 0.92
131 6 0.06
ACGTcount: A:0.47, C:0.06, G:0.11, T:0.36
Consensus pattern (130 bp):
ATTTTGAGAAAAAGTTGAAAGTATCAATTTTCTTTAAAAATAAAATTTCAGAAAAAAGTATTTTG
AGAAAAAGTTGGAAGTACAAATTTTTCTTAAAAATAAAATTTCTAAAATAAAAATTTTCAAAAAC
Found at i:2897773 original size:60 final size:61
Alignment explanation
Indices: 2897668--2897818 Score: 161
Period size: 59 Copynumber: 2.5 Consensus size: 61
2897658 TTTCAAAAAC
** *
2897668 ATTTTGAGAAAAAGTTGAAAGTATCAATTTTCTTTGAAATTAAAATT-TC-AGAAAAAAGT
1 ATTTTGAGAAAAAGTTGAAAGTATCAATTTTCTTAAAAATAAAAATTATCAAGAAAAAAGT
* *
2897727 ATTTTGAGTAAAAGTTGGAAGTA-CAAATTTTTCTTAAAAATAAAAATTATCAAGAAAAACA-T
1 ATTTTGAGAAAAAGTTGAAAGTATC-AA-TTTTCTTAAAAATAAAAATTATCAAGAAAAA-AGT
* *
2897789 -TTTTAAGGAAAAA-TTAAAAGTATCAATTTT
1 ATTTTGA-GAAAAAGTTGAAAGTATCAATTTT
2897819 TCTTGTATAA
Statistics
Matches: 76, Mismatches: 9, Indels: 13
0.78 0.09 0.13
Matches are distributed among these distances:
58 1 0.01
59 23 0.30
60 21 0.28
61 16 0.21
62 14 0.18
63 1 0.01
ACGTcount: A:0.48, C:0.05, G:0.12, T:0.35
Consensus pattern (61 bp):
ATTTTGAGAAAAAGTTGAAAGTATCAATTTTCTTAAAAATAAAAATTATCAAGAAAAAAGT
Found at i:2903533 original size:31 final size:30
Alignment explanation
Indices: 2903467--2903534 Score: 82
Period size: 31 Copynumber: 2.2 Consensus size: 30
2903457 TTTTAATTCT
* * * * *
2903467 TAAAAATTAAAATTACTTTATTTGATATTA
1 TAAAAATTAAAATTAATTGATTTAAAAGTA
2903497 TAAAAATTAAATATTAATTGATTTAAAAGTA
1 TAAAAATTAAA-ATTAATTGATTTAAAAGTA
2903528 TAAAAAT
1 TAAAAAT
2903535 AACCATGAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 11 0.34
31 21 0.66
ACGTcount: A:0.53, C:0.01, G:0.04, T:0.41
Consensus pattern (30 bp):
TAAAAATTAAAATTAATTGATTTAAAAGTA
Found at i:2906721 original size:27 final size:27
Alignment explanation
Indices: 2906683--2906736 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
2906673 AGGAGGATGG
2906683 TGAGTCTTCTTGTTATTGCAGAAGTAT
1 TGAGTCTTCTTGTTATTGCAGAAGTAT
2906710 TGAGTCTTCTTGTTATTGCAGAAGTAT
1 TGAGTCTTCTTGTTATTGCAGAAGTAT
2906737 CCTTTGAGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.22, C:0.11, G:0.22, T:0.44
Consensus pattern (27 bp):
TGAGTCTTCTTGTTATTGCAGAAGTAT
Found at i:2909289 original size:2 final size:2
Alignment explanation
Indices: 2909282--2909307 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
2909272 TGCCCAACTG
2909282 CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT
2909308 TTCCAGCCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:2933789 original size:97 final size:97
Alignment explanation
Indices: 2933623--2933817 Score: 372
Period size: 97 Copynumber: 2.0 Consensus size: 97
2933613 GGTTACTGAT
* *
2933623 TGAAATAAATCATTATCACGTGGCACATCTGCCTATCTGGTTACATTAACGTCACTTTTGCTTCC
1 TGAAATAAATCATTATCACGTGGCACATCTGCCTATCTGGTTACATTAACGTCACTCTTACTTCC
2933688 CCTTTAACTACATATATATATATATATATATA
66 CCTTTAACTACATATATATATATATATATATA
2933720 TGAAATAAATCATTATCACGTGGCACATCTGCCTATCTGGTTACATTAACGTCACTCTTACTTCC
1 TGAAATAAATCATTATCACGTGGCACATCTGCCTATCTGGTTACATTAACGTCACTCTTACTTCC
2933785 CCTTTAACTACATATATATATATATATATATA
66 CCTTTAACTACATATATATATATATATATATA
2933817 T
1 T
2933818 AAACACACAT
Statistics
Matches: 96, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
97 96 1.00
ACGTcount: A:0.32, C:0.21, G:0.09, T:0.38
Consensus pattern (97 bp):
TGAAATAAATCATTATCACGTGGCACATCTGCCTATCTGGTTACATTAACGTCACTCTTACTTCC
CCTTTAACTACATATATATATATATATATATA
Found at i:2933929 original size:65 final size:65
Alignment explanation
Indices: 2933825--2933953 Score: 231
Period size: 65 Copynumber: 2.0 Consensus size: 65
2933815 TATAAACACA
* * *
2933825 CATATCGATATTGATAATCTGTGTTTCATATTCTCATTATTATGAGAATCATTATATACATTTTT
1 CATATCGATATTAATAATCTGTGTTTCATATTCTCATTATTACGAGAACCATTATATACATTTTT
2933890 CATATCGATATTAATAATCTGTGTTTCATATTCTCATTATTACGAGAACCATTATATACATTTT
1 CATATCGATATTAATAATCTGTGTTTCATATTCTCATTATTACGAGAACCATTATATACATTTT
2933954 CCGAAGAATG
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
65 61 1.00
ACGTcount: A:0.32, C:0.14, G:0.09, T:0.46
Consensus pattern (65 bp):
CATATCGATATTAATAATCTGTGTTTCATATTCTCATTATTACGAGAACCATTATATACATTTTT
Found at i:2935777 original size:16 final size:16
Alignment explanation
Indices: 2935756--2935795 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
2935746 AGGATAGGAA
2935756 AAAAATTAAACA-TATT
1 AAAAATTAAA-ATTATT
2935772 AAAAATTAAAATTATT
1 AAAAATTAAAATTATT
*
2935788 AAATATTA
1 AAAAATTA
2935796 TCTATTAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 1 0.05
16 21 0.95
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (16 bp):
AAAAATTAAAATTATT
Found at i:2939549 original size:11 final size:11
Alignment explanation
Indices: 2939535--2939595 Score: 55
Period size: 11 Copynumber: 6.2 Consensus size: 11
2939525 GTATTTATAT
2939535 TATATTAAATA
1 TATATTAAATA
2939546 TATATTAAATA
1 TATATTAAATA
*
2939557 -AAATT--AT-
1 TATATTAAATA
*
2939564 TATATTAAATT
1 TATATTAAATA
2939575 TATATT-AATA
1 TATATTAAATA
2939585 T-T-TTAAATA
1 TATATTAAATA
2939594 TA
1 TA
2939596 ACATAAATTT
Statistics
Matches: 41, Mismatches: 3, Indels: 13
0.72 0.05 0.23
Matches are distributed among these distances:
8 8 0.20
9 6 0.15
10 10 0.24
11 17 0.41
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (11 bp):
TATATTAAATA
Found at i:2939569 original size:18 final size:17
Alignment explanation
Indices: 2939529--2939573 Score: 56
Period size: 16 Copynumber: 2.6 Consensus size: 17
2939519 ATTTGTGTAT
* *
2939529 TTATATTATATTAAATA
1 TTATATTAAATAAAATA
2939546 -TATATTAAATAAAATTA
1 TTATATTAAATAAAA-TA
2939563 TTATATTAAAT
1 TTATATTAAAT
2939574 TTATATTAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 12 0.50
17 2 0.08
18 10 0.42
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
TTATATTAAATAAAATA
Found at i:2960519 original size:13 final size:13
Alignment explanation
Indices: 2960509--2960534 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2960499 AACCTTCCAT
2960509 GGTTCCCTTCCTC
1 GGTTCCCTTCCTC
2960522 GGTTCCCTTCCTC
1 GGTTCCCTTCCTC
2960535 TACGATGATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.46, G:0.15, T:0.38
Consensus pattern (13 bp):
GGTTCCCTTCCTC
Found at i:2961170 original size:24 final size:24
Alignment explanation
Indices: 2961118--2961164 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
2961108 TCGGTATCTG
* *
2961118 CCATACTCTGGACTCCTGTGCCTC
1 CCATACTCAGGACTCCTGCGCCTC
*
2961142 CCATACTCAGGACTCTTGCGCCT
1 CCATACTCAGGACTCCTGCGCCT
2961165 GTCATAAGCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.15, C:0.40, G:0.17, T:0.28
Consensus pattern (24 bp):
CCATACTCAGGACTCCTGCGCCTC
Found at i:2965126 original size:21 final size:22
Alignment explanation
Indices: 2965102--2965152 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 22
2965092 TTATATTATA
*
2965102 AAATTTAATTTACCTAT-TAAT
1 AAATTTAATTTACCAATATAAT
* *
2965123 AAATAT-ATTTATCAATATAAT
1 AAATTTAATTTACCAATATAAT
2965144 AAA-TTAATT
1 AAATTTAATT
2965153 ATATTTTATT
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
20 9 0.38
21 15 0.62
ACGTcount: A:0.49, C:0.06, G:0.00, T:0.45
Consensus pattern (22 bp):
AAATTTAATTTACCAATATAAT
Found at i:2965319 original size:24 final size:25
Alignment explanation
Indices: 2965269--2965337 Score: 68
Period size: 25 Copynumber: 2.7 Consensus size: 25
2965259 ATATATTTTT
*
2965269 TAATTTTTAATAATACAAAATACAA
1 TAATTTTTAATAATAAAAAATACAA
** *
2965294 TAATTTTTAATTTTAAAAAAT-TAA
1 TAATTTTTAATAATAAAAAATACAA
*
2965318 TAATTATTAACTAAATAAAA
1 TAATTTTTAA-T-AATAAAA
2965338 TAATTTCAAA
Statistics
Matches: 35, Mismatches: 7, Indels: 3
0.78 0.16 0.07
Matches are distributed among these distances:
24 11 0.31
25 19 0.54
26 5 0.14
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.41
Consensus pattern (25 bp):
TAATTTTTAATAATAAAAAATACAA
Found at i:2965976 original size:23 final size:21
Alignment explanation
Indices: 2965950--2966002 Score: 56
Period size: 23 Copynumber: 2.5 Consensus size: 21
2965940 TTTGTTCATT
2965950 TAAATATAATCAA-TTAATAGATA
1 TAAATATAAT-AATTTAA-A-ATA
*
2965973 TAAATTTAATAATTTAAAATA
1 TAAATATAATAATTTAAAATA
2965994 T-AATATAAT
1 TAAATATAAT
2966003 GATATGATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
20 7 0.26
21 4 0.15
22 3 0.11
23 13 0.48
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.40
Consensus pattern (21 bp):
TAAATATAATAATTTAAAATA
Found at i:2966036 original size:22 final size:22
Alignment explanation
Indices: 2966011--2966087 Score: 77
Period size: 22 Copynumber: 3.4 Consensus size: 22
2966001 ATGATATGAT
*
2966011 AAAAATAAATAAATAAAATATA
1 AAAAATAAATAAATAAAATTTA
*
2966033 AAAAATAATATAATTTAAAATTTA
1 AAAAATAA-ATAA-ATAAAATTTA
*
2966057 AAAAA-AAAT-TATATAAATTTA
1 AAAAATAAATAAATA-AAATTTA
2966078 ATAAAATAAA
1 A-AAAATAAA
2966088 AAAAATATTT
Statistics
Matches: 46, Mismatches: 4, Indels: 9
0.78 0.07 0.15
Matches are distributed among these distances:
20 2 0.04
21 8 0.17
22 14 0.30
23 9 0.20
24 13 0.28
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (22 bp):
AAAAATAAATAAATAAAATTTA
Found at i:2966051 original size:17 final size:18
Alignment explanation
Indices: 2966017--2966094 Score: 50
Period size: 17 Copynumber: 4.3 Consensus size: 18
2966007 TGATAAAAAT
2966017 AAATAAATAAAATATAAA
1 AAATAAATAAAATATAAA
* *
2966035 AAAT-AATATAATTTAAA
1 AAATAAATAAAATATAAA
** * *
2966052 ATTTAAAAAAAAATTATATA
1 AAAT-AAATAAAA-TATAAA
* * *
2966072 AATTTAATAAAATAAAAA
1 AAATAAATAAAATATAAA
2966090 AAATA
1 AAATA
2966095 TTTATATTTT
Statistics
Matches: 42, Mismatches: 15, Indels: 6
0.67 0.24 0.10
Matches are distributed among these distances:
17 13 0.31
18 11 0.26
19 11 0.26
20 7 0.17
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (18 bp):
AAATAAATAAAATATAAA
Found at i:2966051 original size:28 final size:28
Alignment explanation
Indices: 2966020--2966091 Score: 78
Period size: 27 Copynumber: 2.6 Consensus size: 28
2966010 TAAAAATAAA
2966020 TAAATAAAATATAAAAAATAATAT-AATT
1 TAAATAAAATA-AAAAAATAATATAAATT
** *
2966048 TAAAATTTAA-AAAAAAATTATATAAATT
1 T-AAATAAAATAAAAAAATAATATAAATT
2966076 T-AATAAAATAAAAAAA
1 TAAATAAAATAAAAAAA
2966092 ATATTTATAT
Statistics
Matches: 36, Mismatches: 5, Indels: 7
0.75 0.10 0.15
Matches are distributed among these distances:
26 5 0.14
27 18 0.50
28 7 0.19
29 6 0.17
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (28 bp):
TAAATAAAATAAAAAAATAATATAAATT
Found at i:2966092 original size:28 final size:27
Alignment explanation
Indices: 2966022--2966094 Score: 85
Period size: 28 Copynumber: 2.7 Consensus size: 27
2966012 AAAATAAATA
*
2966022 AATAAAATATAAAAAATAATATAATTT
1 AATAAAATAAAAAAAATAATATAATTT
** *
2966049 AA-AATTTAAAAAAAAATTATATAAATTT
1 AATAAAAT-AAAAAAAATAATAT-AATTT
2966077 AATAAAATAAAAAAAATA
1 AATAAAATAAAAAAAATA
2966095 TTTATATTTT
Statistics
Matches: 36, Mismatches: 7, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
26 3 0.08
27 14 0.39
28 16 0.44
29 3 0.08
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (27 bp):
AATAAAATAAAAAAAATAATATAATTT
Found at i:2966106 original size:29 final size:28
Alignment explanation
Indices: 2966022--2966100 Score: 83
Period size: 29 Copynumber: 2.9 Consensus size: 28
2966012 AAAATAAATA
* *
2966022 AATAAAATATAAAAAATA-ATATAATTT
1 AATAAAATAAAAAAAATATTTATAATTT
**
2966049 AA-AATTTAAAAAAAA-ATTATATAAATTT
1 AATAAAATAAAAAAAATATT-TAT-AATTT
2966077 AATAAAATAAAAAAAATATTTATA
1 AATAAAATAAAAAAAATATTTATA
2966101 TTTTTATATC
Statistics
Matches: 41, Mismatches: 6, Indels: 9
0.73 0.11 0.16
Matches are distributed among these distances:
25 1 0.02
26 10 0.24
27 5 0.12
28 8 0.20
29 14 0.34
30 3 0.07
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (28 bp):
AATAAAATAAAAAAAATATTTATAATTT
Found at i:2966149 original size:2 final size:2
Alignment explanation
Indices: 2966144--2966168 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
2966134 TTTATATAAA
2966144 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
2966169 AATTATCTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:2978661 original size:21 final size:20
Alignment explanation
Indices: 2978635--2978703 Score: 66
Period size: 21 Copynumber: 3.4 Consensus size: 20
2978625 TCAAAACTTA
*
2978635 ATCAAAGTTATATTAAATGTT
1 ATCAAAATTATATTAAA-GTT
* *
2978656 ATCAAAATTTTACTAAAGTT
1 ATCAAAATTATATTAAAGTT
** *
2978676 GCCAAAATTATATTAGAGGTT
1 ATCAAAATTATATTA-AAGTT
2978697 ATCAAAA
1 ATCAAAA
2978704 CAATACGAAA
Statistics
Matches: 37, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
20 14 0.38
21 23 0.62
ACGTcount: A:0.45, C:0.09, G:0.10, T:0.36
Consensus pattern (20 bp):
ATCAAAATTATATTAAAGTT
Found at i:2978758 original size:22 final size:21
Alignment explanation
Indices: 2978716--2978779 Score: 55
Period size: 22 Copynumber: 3.0 Consensus size: 21
2978706 ATACGAAAGG
2978716 TTACAAAAAATTATAACAAAT
1 TTACAAAAAATTATAACAAAT
2978737 ATTACAAAAACTATTA-AA-AAAT
1 -TTACAAAAA--ATTATAACAAAT
*
2978759 TTATC--AAAATTATATCAAAT
1 TTA-CAAAAAATTATAACAAAT
2978779 T
1 T
2978780 ATATGAAAAT
Statistics
Matches: 36, Mismatches: 1, Indels: 12
0.73 0.02 0.24
Matches are distributed among these distances:
18 4 0.11
19 1 0.03
20 8 0.22
21 3 0.08
22 14 0.39
23 2 0.06
24 4 0.11
ACGTcount: A:0.58, C:0.09, G:0.00, T:0.33
Consensus pattern (21 bp):
TTACAAAAAATTATAACAAAT
Found at i:2978767 original size:10 final size:11
Alignment explanation
Indices: 2978754--2978791 Score: 53
Period size: 10 Copynumber: 3.6 Consensus size: 11
2978744 AAACTATTAA
2978754 AAAATT-TATC
1 AAAATTATATC
2978764 AAAATTATATC
1 AAAATTATATC
*
2978775 -AAATTATATG
1 AAAATTATATC
2978785 AAAATTA
1 AAAATTA
2978792 AGTAAAAGGT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
10 15 0.60
11 10 0.40
ACGTcount: A:0.55, C:0.05, G:0.03, T:0.37
Consensus pattern (11 bp):
AAAATTATATC
Found at i:2978928 original size:21 final size:20
Alignment explanation
Indices: 2978878--2978927 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
2978868 TTATATCAAA
2978878 TTATTGAAAATATATAAAAAG
1 TTATT-AAAATATATAAAAAG
* *
2978899 TTACTAAAATCATAT-AAATG
1 TTATTAAAAT-ATATAAAAAG
2978919 TTATTAAAA
1 TTATTAAAA
2978928 AATTATTAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
20 17 0.68
21 8 0.32
ACGTcount: A:0.54, C:0.04, G:0.06, T:0.36
Consensus pattern (20 bp):
TTATTAAAATATATAAAAAG
Found at i:2978937 original size:21 final size:22
Alignment explanation
Indices: 2978884--2978948 Score: 57
Period size: 21 Copynumber: 3.1 Consensus size: 22
2978874 CAAATTATTG
*
2978884 AAAAT-ATATAAAAAGTTACT--
1 AAAATCATATAAATA-TTACTAA
* *
2978904 AAAATCATATAAATGTTATTAA
1 AAAATCATATAAATATTACTAA
*
2978926 AAAATTAT-TAAATATTACTAA
1 AAAATCATATAAATATTACTAA
2978947 AA
1 AA
2978949 TTGTATGAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 5
0.77 0.13 0.11
Matches are distributed among these distances:
20 9 0.25
21 20 0.56
22 7 0.19
ACGTcount: A:0.58, C:0.05, G:0.03, T:0.34
Consensus pattern (22 bp):
AAAATCATATAAATATTACTAA
Found at i:2979132 original size:21 final size:21
Alignment explanation
Indices: 2979108--2979155 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
2979098 AAAAGGTTGC
2979108 CAAAATGA-CATAAAATGTTAT
1 CAAAATGATCATAAAA-GTTAT
* *
2979129 CAAAATTATTATAAAAGTTAT
1 CAAAATGATCATAAAAGTTAT
2979150 CAAAAT
1 CAAAAT
2979156 TATATCAATG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 18 0.75
22 6 0.25
ACGTcount: A:0.54, C:0.08, G:0.06, T:0.31
Consensus pattern (21 bp):
CAAAATGATCATAAAAGTTAT
Found at i:2979156 original size:21 final size:22
Alignment explanation
Indices: 2979117--2979158 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 22
2979107 CCAAAATGAC
2979117 ATAAAATGTTATCAAAATTATT
1 ATAAAATGTTATCAAAATTATT
2979139 ATAAAA-GTTATCAAAATTAT
1 ATAAAATGTTATCAAAATTAT
2979159 ATCAATGATT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.52, C:0.05, G:0.05, T:0.38
Consensus pattern (22 bp):
ATAAAATGTTATCAAAATTATT
Found at i:2979206 original size:21 final size:21
Alignment explanation
Indices: 2979125--2979289 Score: 80
Period size: 21 Copynumber: 8.0 Consensus size: 21
2979115 ACATAAAATG
2979125 TTATCAAAATTATTAT-AA-AA
1 TTATCAAAATTA-TATCAATAA
*
2979145 GTTATCAAAATTATATCAATGA
1 -TTATCAAAATTATATCAATAA
* * *
2979167 TTA--AAAA--AAATAAAAAA
1 TTATCAAAATTATATCAATAA
*
2979184 TTATCAAAATTGTATCAATAA
1 TTATCAAAATTATATCAATAA
* * *
2979205 TTATAAAAATCATAT-AAAATA
1 TTATCAAAATTATATCAATA-A
* *
2979226 TTA-CAAAAATTATATTAATTA
1 TTATC-AAAATTATATCAATAA
**
2979247 TTA-CAAAATCCGTATCTAA-AA
1 TTATCAAAAT-TATATC-AATAA
* *
2979268 TTATCAAAATTTTATTAATAA
1 TTATCAAAATTATATCAATAA
2979289 T
1 T
2979290 AAATTAAAAG
Statistics
Matches: 107, Mismatches: 24, Indels: 26
0.68 0.15 0.17
Matches are distributed among these distances:
17 9 0.08
19 8 0.07
20 13 0.12
21 66 0.62
22 11 0.10
ACGTcount: A:0.54, C:0.07, G:0.02, T:0.36
Consensus pattern (21 bp):
TTATCAAAATTATATCAATAA
Found at i:2979235 original size:42 final size:38
Alignment explanation
Indices: 2979141--2979254 Score: 113
Period size: 38 Copynumber: 2.9 Consensus size: 38
2979131 AAATTATTAT
* *
2979141 AAAAGTTATCAAAATTATATCAATGATTAAAAAAAATA
1 AAAAATTATCAAAATTATATCAATAATTAAAAAAAATA
*
2979179 AAAAATTATCAAAATTGTATCAATAATTATAAAAATCATATA
1 AAAAATTATCAAAATTATATCAATAATTA-AAAAA--A-ATA
* * * *
2979221 AAATATTA-CAAAAATTATATTAATTATTACAAAA
1 AAAAATTATC-AAAATTATATCAATAATTAAAAAA
2979255 TCCGTATCTA
Statistics
Matches: 63, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
38 26 0.41
39 5 0.08
41 6 0.10
42 26 0.41
ACGTcount: A:0.59, C:0.06, G:0.03, T:0.32
Consensus pattern (38 bp):
AAAAATTATCAAAATTATATCAATAATTAAAAAAAATA
Found at i:2979277 original size:42 final size:41
Alignment explanation
Indices: 2979138--2979289 Score: 134
Period size: 42 Copynumber: 3.7 Consensus size: 41
2979128 TCAAAATTAT
* * * *
2979138 TATAAAAGTTATCAAAATTATATCAATGATTA-AAAAA-AA
1 TATAAAAATTATCAAAATTATATTAATAATTATAAAAATCA
* *
2979177 TA-AAAAATTATCAAAATTGTATCAATAATTATAAAAATCA
1 TATAAAAATTATCAAAATTATATTAATAATTATAAAAATCA
* * *
2979217 TATAAAATATTA-CAAAAATTATATTAATTATTA-CAAAATCCG
1 TATAAAA-ATTATC-AAAATTATATTAATAATTATAAAAAT-CA
* *
2979259 TATCTAAAATTATCAAAATTTTATTAATAAT
1 TAT-AAAAATTATCAAAATTATATTAATAAT
2979290 AAATTAAAAG
Statistics
Matches: 93, Mismatches: 12, Indels: 13
0.79 0.10 0.11
Matches are distributed among these distances:
38 26 0.28
39 7 0.08
40 3 0.03
41 10 0.11
42 43 0.46
43 4 0.04
ACGTcount: A:0.55, C:0.07, G:0.03, T:0.36
Consensus pattern (41 bp):
TATAAAAATTATCAAAATTATATTAATAATTATAAAAATCA
Found at i:2981781 original size:3 final size:3
Alignment explanation
Indices: 2981773--2981797 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
2981763 GTTTTAATTT
2981773 TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA T
2981798 TTTAAAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:2981867 original size:14 final size:14
Alignment explanation
Indices: 2981846--2981883 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
2981836 ATATAAAAGG
2981846 AAAAACAAAACA-A
1 AAAAACAAAACAGA
*
2981859 AACAAACAAAAGAGA
1 AA-AAACAAAACAGA
2981874 AAAAACAAAA
1 AAAAACAAAA
2981884 AGTAGGGTGG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
13 2 0.09
14 17 0.77
15 3 0.14
ACGTcount: A:0.82, C:0.13, G:0.05, T:0.00
Consensus pattern (14 bp):
AAAAACAAAACAGA
Found at i:2985381 original size:41 final size:41
Alignment explanation
Indices: 2985336--2985423 Score: 140
Period size: 41 Copynumber: 2.1 Consensus size: 41
2985326 TTAAAGTCTT
**
2985336 TGTTTAAGAAGAACCGTTTTCAATCAAGATTTCAAAGCCTC
1 TGTTTAAGAAGAACCAATTTCAATCAAGATTTCAAAGCCTC
* *
2985377 TGTTTAAGAGGAATCAATTTCAATCAAGATTTCAAAGCCTC
1 TGTTTAAGAAGAACCAATTTCAATCAAGATTTCAAAGCCTC
2985418 TGTTTA
1 TGTTTA
2985424 GAGGGAACCT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.34
Consensus pattern (41 bp):
TGTTTAAGAAGAACCAATTTCAATCAAGATTTCAAAGCCTC
Found at i:2985831 original size:88 final size:88
Alignment explanation
Indices: 2985678--2985858 Score: 258
Period size: 88 Copynumber: 2.1 Consensus size: 88
2985668 AAGATTTTGA
* *
2985678 GATT-TGTAAGACCTCTGGGCATAAATTCGATTCGTGGTATTATCCCGATCGATTCTTTATCTTT
1 GATTCTGTAAGACCTCTGGGCATAAATTCGATTCGCGATATTATCCCGATCGATTCTTTATCTTT
2985742 TGACTTG-TGATGTTATCCCAGTC
66 TGACTTGCTG-TGTTATCCCAGTC
* * * * *
2985765 GATTCTGTAAGACCTTTGGGCATAAATTTGATTCGCGATGTTATCCTGATCGATTCTTTATTTTT
1 GATTCTGTAAGACCTCTGGGCATAAATTCGATTCGCGATATTATCCCGATCGATTCTTTATCTTT
**
2985830 TGACTTGCTGTGTTATCTTAGTC
66 TGACTTGCTGTGTTATCCCAGTC
2985853 GATTCT
1 GATTCT
2985859 AAAACCTTCA
Statistics
Matches: 83, Mismatches: 9, Indels: 3
0.87 0.09 0.03
Matches are distributed among these distances:
87 4 0.05
88 77 0.93
89 2 0.02
ACGTcount: A:0.20, C:0.18, G:0.19, T:0.43
Consensus pattern (88 bp):
GATTCTGTAAGACCTCTGGGCATAAATTCGATTCGCGATATTATCCCGATCGATTCTTTATCTTT
TGACTTGCTGTGTTATCCCAGTC
Found at i:2986015 original size:22 final size:22
Alignment explanation
Indices: 2985990--2986040 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 22
2985980 GTCAATTTTG
* *
2985990 TAAGATCGTCGGGCATTATTTC
1 TAAGACCGTCGGGCATGATTTC
*
2986012 TAAGACCTTCGGGCATGATTTC
1 TAAGACCGTCGGGCATGATTTC
2986034 TAAGACC
1 TAAGACC
2986041 TCCGAGCATA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.31
Consensus pattern (22 bp):
TAAGACCGTCGGGCATGATTTC
Found at i:2986041 original size:22 final size:22
Alignment explanation
Indices: 2985998--2986041 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
2985988 TGTAAGATCG
*
2985998 TCGGGCATTATTTCTAAGACCT
1 TCGGGCATGATTTCTAAGACCT
2986020 TCGGGCATGATTTCTAAGACCT
1 TCGGGCATGATTTCTAAGACCT
2986042 CCGAGCATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.34
Consensus pattern (22 bp):
TCGGGCATGATTTCTAAGACCT
Found at i:2986049 original size:22 final size:22
Alignment explanation
Indices: 2986002--2986054 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
2985992 AGATCGTCGG
* * *
2986002 GCATTATTTCTAAGACCTTCGG
1 GCATAATTTCTAAGACCTCCGA
*
2986024 GCATGATTTCTAAGACCTCCGA
1 GCATAATTTCTAAGACCTCCGA
2986046 GCATAATTT
1 GCATAATTT
2986055 TGATTCGCGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.34
Consensus pattern (22 bp):
GCATAATTTCTAAGACCTCCGA
Found at i:2986125 original size:131 final size:130
Alignment explanation
Indices: 2985772--2986228 Score: 462
Period size: 131 Copynumber: 3.5 Consensus size: 130
2985762 GTCGATTCTG
** * *
2985772 TAAGACCTTTGGGCATAAATTTGATTCGCGATGTTATCCTGATCGATTCTTTATTTTTTGACTTG
1 TAAGACCTCCGGGCATAATTTTGATTCGCGATGTTATCCCGATCGATTCTTTA-TTTTTGACTTG
* * * *
2985837 CTGTGTTATCTTAG--TCGA-TTCTAAAACCTTCAGGCATGATTCTGTAAGACC-TCTGGACATG
65 CGGTGTTATC-TAGCAT-GATTTCTAAGACC-TCGGGCATGATTCTGTAAGACCTTC-GGGCATG
2985898 ATTTC
126 ATTTC
* * * ** * ** *
2985903 TAAGACCTTCGGGTATAATTTCT-ATTCGTGACATTGTCCCGATATATTCTTTATTTTTGACTTA
1 TAAGACCTCCGGGCATAATTT-TGATTCGCGATGTTATCCCGATCGATTCTTTATTTTTGACTTG
* * * * *
2985967 CGATGTTATCCTAGTCA--ATTTTGTAAGATCGTCGGGCATTATT-TCTAAGACCTTCGGGCATG
65 CGGTGTTAT-CTAG-CATGA-TTTCTAAGA-CCTCGGGCATGATTCTGTAAGACCTTCGGGCATG
2986029 ATTTC
126 ATTTC
*
2986034 TAAGACCTCCGAGCATAATTTTGATTCGCGATGTTATCCCGATCGATTCTTTATTTTTGACTTGC
1 TAAGACCTCCGGGCATAATTTTGATTCGCGATGTTATCCCGATCGATTCTTTATTTTTGACTTGC
* * * *
2986099 GGTGTTATCTGAGCATGATTTCTAAGACCTCCGGACATGATTCTGTAAAACTTTCGAGCATGATT
66 GGTGTTATCT-AGCATGATTTCTAAGACCT-CGGGCATGATTCTGTAAGACCTTCGGGCATGATT
2986164 TC
129 TC
* * * * *
2986166 TAAGACCTCCGGGCATAATTTTGATTTGTGATGTTGTTCCGATCGATTCTTTATTTCTGACTT
1 TAAGACCTCCGGGCATAATTTTGATTCGCGATGTTATCCCGATCGATTCTTTATTTTTGACTT
2986229 ATAGTGTTAT
Statistics
Matches: 266, Mismatches: 45, Indels: 29
0.78 0.13 0.09
Matches are distributed among these distances:
130 28 0.11
131 140 0.53
132 97 0.36
133 1 0.00
ACGTcount: A:0.23, C:0.19, G:0.18, T:0.40
Consensus pattern (130 bp):
TAAGACCTCCGGGCATAATTTTGATTCGCGATGTTATCCCGATCGATTCTTTATTTTTGACTTGC
GGTGTTATCTAGCATGATTTCTAAGACCTCGGGCATGATTCTGTAAGACCTTCGGGCATGATTTC
Found at i:2986140 original size:22 final size:22
Alignment explanation
Indices: 2986112--2986186 Score: 71
Period size: 22 Copynumber: 3.4 Consensus size: 22
2986102 GTTATCTGAG
2986112 CATGATTTCTAAGACCTCCGGA
1 CATGATTTCTAAGACCTCCGGA
* * * *
2986134 CATGATTCTGTAAAACTTTC-GA
1 CATGATT-TCTAAGACCTCCGGA
*
2986156 GCATGATTTCTAAGACCTCCGGG
1 -CATGATTTCTAAGACCTCCGGA
*
2986179 CATAATTT
1 CATGATTT
2986187 TGATTTGTGA
Statistics
Matches: 40, Mismatches: 10, Indels: 6
0.71 0.18 0.11
Matches are distributed among these distances:
22 24 0.60
23 16 0.40
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (22 bp):
CATGATTTCTAAGACCTCCGGA
Found at i:2986239 original size:263 final size:262
Alignment explanation
Indices: 2985784--2986282 Score: 641
Period size: 263 Copynumber: 1.9 Consensus size: 262
2985774 AGACCTTTGG
* * *
2985784 GCATAAATTTGATTCGCGATGTTATCCTGATCGATTCTTTATTTTTTGACTTGCTGTGTTATCTT
1 GCATAAATTTGATTCGCGATGTTATCCCGATCGATTCTTTATTTTTTGACTTGCGGTGTTATCTG
* * *
2985849 AGTCGATTCTAAAACCTTCAGGCATGATTCTGTAAGACCTCTGGACATGATTTCTAAGACCTTCG
66 AGTCGATTCTAAAACCTTCAGGCATGATTCTGTAAGAACTCTCGACATGATTTCTAAGACCTCCG
* * * * *
2985914 GGTATAATTTCTATTCGTGACATTGTCCCGATATATTCTTTATTTTTGACTTACGATGTTATCCT
131 GGCATAATTTCTATTCGTGACATTGTCCCGATAGATTCTTTATTTCTGACTTAAGATGTTATCCC
** * * * *
2985979 AGTCAATTTTGTAAGATCGTCGGGCATTATTTCTAAGACCTTCGGGCATGATTTCTAAGACCTCC
196 AACCAATTCTGTAAGAACGTCGAGCATGATTTCTAAGACCTTCGGGCATGATTTCTAAGACCTCC
2986044 GA
261 GA
*
2986046 GCATAATTTTGATTCGCGATGTTATCCCGATCGATTCTTTA-TTTTTGACTTGCGGTGTTATCTG
1 GCATAAATTTGATTCGCGATGTTATCCCGATCGATTCTTTATTTTTTGACTTGCGGTGTTATCTG
* * *
2986110 AG-CATGATTTCTAAGACC-TCCGGACATGATTCTGTAA-AACTTTCGAGCATGATTTCTAAGAC
66 AGTC--GA-TTCTAAAACCTTCAGG-CATGATTCTGTAAGAACTCTCGA-CATGATTTCTAAGAC
* ** * *
2986172 CTCCGGGCATAATTT-TGATTTGTGATGTTGTTCCGATCGATTCTTTATTTCTGACTTATAG-TG
126 CTCCGGGCATAATTTCT-ATTCGTGACATTGTCCCGATAGATTCTTTATTTCTGACTTA-AGATG
* *
2986235 TTATCCCAACCAATTCTGTAAGAACTTCGAGCATGATTTTTAAGACCT
189 TTATCCCAACCAATTCTGTAAGAACGTCGAGCATGATTTCTAAGACCT
2986283 CCGAGTAATT
Statistics
Matches: 202, Mismatches: 28, Indels: 13
0.83 0.12 0.05
Matches are distributed among these distances:
260 1 0.00
261 23 0.11
262 52 0.26
263 125 0.62
264 1 0.00
ACGTcount: A:0.23, C:0.19, G:0.18, T:0.40
Consensus pattern (262 bp):
GCATAAATTTGATTCGCGATGTTATCCCGATCGATTCTTTATTTTTTGACTTGCGGTGTTATCTG
AGTCGATTCTAAAACCTTCAGGCATGATTCTGTAAGAACTCTCGACATGATTTCTAAGACCTCCG
GGCATAATTTCTATTCGTGACATTGTCCCGATAGATTCTTTATTTCTGACTTAAGATGTTATCCC
AACCAATTCTGTAAGAACGTCGAGCATGATTTCTAAGACCTTCGGGCATGATTTCTAAGACCTCC
GA
Found at i:2986287 original size:22 final size:22
Alignment explanation
Indices: 2986253--2986361 Score: 89
Period size: 22 Copynumber: 5.0 Consensus size: 22
2986243 ACCAATTCTG
* *
2986253 TAAGAACTTCGAGCATGATTTT
1 TAAGACCTCCGAGCATGATTTT
* *
2986275 TAAGACCTCCGAG--TAATTCTG
1 TAAGACCTCCGAGCATGATT-TT
*
2986296 TATGACCTCCG-GACATGATTTT
1 TAAGACCTCCGAG-CATGATTTT
* * *
2986318 TAAGACCTTCGAGTATGATTTC
1 TAAGACCTCCGAGCATGATTTT
* *
2986340 TAAGACCTCCGAGTATAATTTT
1 TAAGACCTCCGAGCATGATTTT
2986362 GATTCGCGGT
Statistics
Matches: 68, Mismatches: 14, Indels: 10
0.74 0.15 0.11
Matches are distributed among these distances:
20 5 0.07
21 11 0.16
22 47 0.69
23 5 0.07
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.35
Consensus pattern (22 bp):
TAAGACCTCCGAGCATGATTTT
Found at i:2986424 original size:152 final size:153
Alignment explanation
Indices: 2986265--2986567 Score: 421
Period size: 153 Copynumber: 2.0 Consensus size: 153
2986255 AGAACTTCGA
* ** * * *
2986265 GCATGATTTTTAAGACCTCCGAGTAATTCTGTATGACCTCCG-GACATGATT-TTTAAGACCTTC
1 GCATGATTTCTAAGACCTCCGAACAATTCTGTAAGACCTCCGAGA-ATGATTCTGTAAAACCTTC
* * * *
2986328 GAGTATGATTTCTAAGACCTCCGAGTATAATTTTGATTCGCGGTGTTGTTTCGATCGATTCTTTA
65 GAGAATGATTTCTAAGACCTCCGAGTATAATTTTGATTCACGGTATTGTCTCGATCGATTCTTTA
*
2986393 TTTTTAACTTGTGGTGTTATCCAG
130 TTTTTAACTTGCGGTGTTATCCAG
* * * *
2986417 GCATGATTTCTAAGACCTCTGAACAATTCTGTAAGATCTCCGAGAATGATTCTGTAAAATCTTTG
1 GCATGATTTCTAAGACCTCCGAACAATTCTGTAAGACCTCCGAGAATGATTCTGTAAAACCTTCG
* *
2986482 AGAATGATTTCTAAGACCTCCGGGTATAATTTTGATTTACGGTATTGTCTCGATCGATTCTTTAT
66 AGAATGATTTCTAAGACCTCCGAGTATAATTTTGATTCACGGTATTGTCTCGATCGATTCTTTAT
*
2986547 TTTTGACTTGCGGTGTTATCC
131 TTTTAACTTGCGGTGTTATCC
2986568 CAGTCAATTC
Statistics
Matches: 131, Mismatches: 18, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
152 42 0.32
153 89 0.68
ACGTcount: A:0.24, C:0.17, G:0.19, T:0.40
Consensus pattern (153 bp):
GCATGATTTCTAAGACCTCCGAACAATTCTGTAAGACCTCCGAGAATGATTCTGTAAAACCTTCG
AGAATGATTTCTAAGACCTCCGAGTATAATTTTGATTCACGGTATTGTCTCGATCGATTCTTTAT
TTTTAACTTGCGGTGTTATCCAG
Found at i:2986469 original size:23 final size:23
Alignment explanation
Indices: 2986442--2986503 Score: 72
Period size: 23 Copynumber: 2.7 Consensus size: 23
2986432 CCTCTGAACA
2986442 ATTCTGTAAGATCTCCGAGAATG
1 ATTCTGTAAGATCTCCGAGAATG
* **
2986465 ATTCTGTAAAATCTTTGAGAATG
1 ATTCTGTAAGATCTCCGAGAATG
* *
2986488 ATT-TCTAAGACCTCCG
1 ATTCTGTAAGATCTCCG
2986504 GGTATAATTT
Statistics
Matches: 31, Mismatches: 8, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
22 8 0.26
23 23 0.74
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.34
Consensus pattern (23 bp):
ATTCTGTAAGATCTCCGAGAATG
Found at i:2986656 original size:109 final size:110
Alignment explanation
Indices: 2986485--2986717 Score: 306
Period size: 109 Copynumber: 2.1 Consensus size: 110
2986475 ATCTTTGAGA
* ** ** * * * *
2986485 ATGATTTCTAAGACCTCCGGGTATAATTTTGATTTACGGTATTGTCTCGATCGATTCTTTATTTT
1 ATGATTTCTAAGACCTCCAGACATAATTTCAATTTAAGATATTGTCCCGATCGATTCTTTATTTC
* * *
2986550 TGACTTGCGGTGTTATCCCAGTCAA-TTCTGTAAGACCTCCGGGT
66 TAACTTACGGTGTTATCCCAGTCAATTTCTGTAAGACCTCCGGGC
*
2986594 ATGATTTCTAAGACCTTCAGACATAATTTCAATTTAAGATATTGTCCCGATCGATTCTTTATTTC
1 ATGATTTCTAAGACCTCCAGACATAATTTCAATTTAAGATATTGTCCCGATCGATTCTTTATTTC
* * *
2986659 TAACTTACGGTGTTATCCCAGTCAATTTTTTTAAGACCTCTGGGC
66 TAACTTACGGTGTTATCCCAGTCAATTTCTGTAAGACCTCCGGGC
*
2986704 ATGATTTTTAAGAC
1 ATGATTTCTAAGAC
2986718 TTTCGGGCAA
Statistics
Matches: 106, Mismatches: 17, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
109 78 0.74
110 28 0.26
ACGTcount: A:0.24, C:0.19, G:0.17, T:0.40
Consensus pattern (110 bp):
ATGATTTCTAAGACCTCCAGACATAATTTCAATTTAAGATATTGTCCCGATCGATTCTTTATTTC
TAACTTACGGTGTTATCCCAGTCAATTTCTGTAAGACCTCCGGGC
Found at i:2986713 original size:22 final size:22
Alignment explanation
Indices: 2986686--2986763 Score: 81
Period size: 22 Copynumber: 3.6 Consensus size: 22
2986676 CCAGTCAATT
2986686 TTTTTAAGACCTCTGGGCATGA
1 TTTTTAAGACCTCTGGGCATGA
*
2986708 TTTTTAAGA-CTTTCGGGCA--A
1 TTTTTAAGACCTCT-GGGCATGA
* *
2986728 TTTTGTAAGACCTCCGGACATGA
1 TTTT-TAAGACCTCTGGGCATGA
*
2986751 TTTCTAAGACCTC
1 TTTTTAAGACCTC
2986764 CAGGTATAAT
Statistics
Matches: 46, Mismatches: 5, Indels: 10
0.75 0.08 0.16
Matches are distributed among these distances:
20 5 0.11
21 12 0.26
22 25 0.54
23 4 0.09
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36
Consensus pattern (22 bp):
TTTTTAAGACCTCTGGGCATGA
Found at i:2986870 original size:22 final size:21
Alignment explanation
Indices: 2986842--2986915 Score: 87
Period size: 22 Copynumber: 3.4 Consensus size: 21
2986832 ATCAATTCTG
*
2986842 TAAGACCTCTGGGAATGATTTT
1 TAAGACCTC-CGGAATGATTTT
*
2986864 TAAGACCTCCGG-ATAATTTT
1 TAAGACCTCCGGAATGATTTT
*
2986884 GTAAGACCTCCGGACATGATTTC
1 -TAAGACCTCCGGA-ATGATTTT
2986907 TAAGACCTC
1 TAAGACCTC
2986916 TGGACATAAT
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
20 7 0.16
21 14 0.31
22 18 0.40
23 6 0.13
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (21 bp):
TAAGACCTCCGGAATGATTTT
Found at i:2986890 original size:21 final size:21
Alignment explanation
Indices: 2986835--2986897 Score: 74
Period size: 21 Copynumber: 3.0 Consensus size: 21
2986825 TATCTCAATC
* *
2986835 AATTCTGTAAGACCTCTGGGAAT
1 AATTTTGTAAGACCTC-CGG-AT
*
2986858 GATTTT-TAAGACCTCCGGAT
1 AATTTTGTAAGACCTCCGGAT
2986878 AATTTTGTAAGACCTCCGGA
1 AATTTTGTAAGACCTCCGGA
2986898 CATGATTTCT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
20 7 0.20
21 15 0.43
22 9 0.26
23 4 0.11
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.32
Consensus pattern (21 bp):
AATTTTGTAAGACCTCCGGAT
Found at i:2986911 original size:152 final size:151
Alignment explanation
Indices: 2986572--2987002 Score: 538
Period size: 153 Copynumber: 2.8 Consensus size: 151
2986562 TTATCCCAGT
* ** * * ** *
2986572 CAATTCTGTAAGACCTCCGGGTATGATTTCTAAGACCTTCAGACATAATTTCAATTTAAGATATT
1 CAATTTTGTAAGACCTCCGGACATGATTTCTAAGACC-TCAGGCATAATTTCGATTCGAGATGTT
* * *
2986637 GTCCCGATCGATTCTTTATTTCTAACTTACGGTGTTATCCCAGTCAATTTTTTTAAGACCTCTGG
65 GTCCCGATCGATTCTTTATTTCTAACTTACGGTGTTATCTCAGTCAA-TTCTGTAAGACCTCTGG
* * * *
2986702 GCATGATTTTTAAGACTTTCGGG
129 GAATGATTTTTAAGACCTCCGGA
* * *
2986725 CAATTTTGTAAGACCTCCGGACATGATTTCTAAGACCTCCAGGTATAATTTTGATTCGTGATGTT
1 CAATTTTGTAAGACCTCCGGACATGATTTCTAAGACCT-CAGGCATAATTTCGATTCGAGATGTT
* ** * *
2986790 ATCCTAATCGATTTTTTATTTCTAACTTACGGTGTTATCTCAATCAATTCTGTAAGACCTCTGGG
65 GTCCCGATCGATTCTTTATTTCTAACTTACGGTGTTATCTCAGTCAATTCTGTAAGACCTCTGGG
2986855 AATGATTTTTAAGACCTCCGGA
130 AATGATTTTTAAGACCTCCGGA
* * * *
2986877 TAATTTTGTAAGACCTCCGGACATGATTTCTAAGACCTCTGGACATAATTTCGATTCGCGGTGTT
1 CAATTTTGTAAGACCTCCGGACATGATTTCTAAGACCTCAGG-CATAATTTCGATTCGAGATGTT
* * * *
2986942 GTCCCGATCAATTCTTTATTTTTTGACTTACGATGTTATCTCAGTCAATTCTGTAAGACCT
65 GTCCCGATCGATTCTTTA-TTTCTAACTTACGGTGTTATCTCAGTCAATTCTGTAAGACCT
2987003 TCAGGCATGA
Statistics
Matches: 237, Mismatches: 38, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
151 3 0.01
152 103 0.43
153 131 0.55
ACGTcount: A:0.25, C:0.20, G:0.16, T:0.39
Consensus pattern (151 bp):
CAATTTTGTAAGACCTCCGGACATGATTTCTAAGACCTCAGGCATAATTTCGATTCGAGATGTTG
TCCCGATCGATTCTTTATTTCTAACTTACGGTGTTATCTCAGTCAATTCTGTAAGACCTCTGGGA
ATGATTTTTAAGACCTCCGGA
Found at i:2986920 original size:22 final size:21
Alignment explanation
Indices: 2986842--2986928 Score: 77
Period size: 22 Copynumber: 4.0 Consensus size: 21
2986832 ATCAATTCTG
* * *
2986842 TAAGACCTCTGGGAATGATTTT
1 TAAGACCTC-CGGAATAATTTC
*
2986864 TAAGACCTCCGG-ATAATTTTG
1 TAAGACCTCCGGAATAA-TTTC
*
2986885 TAAGACCTCCGGACATGATTTC
1 TAAGACCTCCGGA-ATAATTTC
*
2986907 TAAGACCTCTGGACATAATTTC
1 TAAGACCTCCGGA-ATAATTTC
2986929 GATTCGCGGT
Statistics
Matches: 55, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
20 3 0.05
21 17 0.31
22 32 0.58
23 3 0.05
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (21 bp):
TAAGACCTCCGGAATAATTTC
Found at i:2986999 original size:262 final size:261
Alignment explanation
Indices: 2986725--2987285 Score: 714
Period size: 262 Copynumber: 2.1 Consensus size: 261
2986715 GACTTTCGGG
* * * **
2986725 CAATTTTGTAAGACCTCCGGACATGATTTCTAAGACCTCCAGGTATAATTTTGATTCGTGATGTT
1 CAATTCTGTAAGACCTCCGGACATGATTTCTAAGACCTCCAGGCATAATTTCGATTCACGATGTT
* *
2986790 ATC-CTAATCGATTTTTTATTTCTAACTTACGGTGTTATCTCAATCAATTCTGTAAGACCTCTGG
66 ATCTC-AATCGATTCTTTATTTCTAACTTACGGTGTTATCTCAATCAATTCTGTAAGACCTCTAG
* * * *
2986854 GAATGATTTTTAAGACCTCCGGATAATTTTGTAAGACCTCCGGACATGATTTCTAAGACCTCTG-
130 GAATGATTTTTAAGACCTCCGGACAATTCTGTAAGACCTCCAGACATGATTTCTAAGACCTCCGA
* * *
2986918 GACATAATTTCGATTCGCGGTGTTGTCCCGATCAATTCTTTATTTTTTGACTTACGATGTTATCT
195 G-CATAATTTCGATTCGCGATGTTGTCCCGATCAATTCTTTA-TTTCTGACTTACGATGTTATCC
2986983 CAGT
258 CAGT
* * * * *
2986987 CAATTCTGTAAGACCTTCAGG-CATGATTTCTAAGACTTTCGGGCATAATTTCGATTCACGGTGT
1 CAATTCTGTAAGACC-TCCGGACATGATTTCTAAGACCTCCAGGCATAATTTCGATTCACGATGT
* * * * * * * *
2987051 TGTCTCGATTGATTCTTTATTTTTGACTTATGGTGTTATCTTAGTCAATTCTGTAAGACCTCTAG
65 TATCTCAATCGATTCTTTATTTCTAACTTACGGTGTTATCTCAATCAATTCTGTAAGACCTCTAG
* * * *
2987116 GCATGATTTTTAAGACCTCTGGACAATTCTGTAAGACCTCCAGACATGATTTTTGAGACCTCCGA
130 GAATGATTTTTAAGACCTCCGGACAATTCTGTAAGACCTCCAGACATGATTTCTAAGACCTCCGA
* * * *
2987181 GCATAATTTTGATTCGCGATGTTGTCCCGATCGATTCTTTATTTCTGACTTATGGTGTTATCCCA
195 GCATAATTTCGATTCGCGATGTTGTCCCGATCAATTCTTTATTTCTGACTTACGATGTTATCCCA
2987246 GT
260 GT
* * * *
2987248 TAATTCTGTAAAACCTTCGAACATGATTTCTAAGACCT
1 CAATTCTGTAAGACCTCCGGACATGATTTCTAAGACCT
2987286 TTAGGTAATT
Statistics
Matches: 254, Mismatches: 41, Indels: 9
0.84 0.13 0.03
Matches are distributed among these distances:
260 2 0.01
261 51 0.20
262 195 0.77
263 6 0.02
ACGTcount: A:0.24, C:0.20, G:0.17, T:0.39
Consensus pattern (261 bp):
CAATTCTGTAAGACCTCCGGACATGATTTCTAAGACCTCCAGGCATAATTTCGATTCACGATGTT
ATCTCAATCGATTCTTTATTTCTAACTTACGGTGTTATCTCAATCAATTCTGTAAGACCTCTAGG
AATGATTTTTAAGACCTCCGGACAATTCTGTAAGACCTCCAGACATGATTTCTAAGACCTCCGAG
CATAATTTCGATTCGCGATGTTGTCCCGATCAATTCTTTATTTCTGACTTACGATGTTATCCCAG
T
Found at i:2987020 original size:22 final size:22
Alignment explanation
Indices: 2986995--2987038 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
2986985 GTCAATTCTG
*
2986995 TAAGACCTTCAGGCATGATTTC
1 TAAGACCTTCAGGCATAATTTC
* *
2987017 TAAGACTTTCGGGCATAATTTC
1 TAAGACCTTCAGGCATAATTTC
2987039 GATTCACGGT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.34
Consensus pattern (22 bp):
TAAGACCTTCAGGCATAATTTC
Found at i:2987020 original size:110 final size:108
Alignment explanation
Indices: 2986878--2987140 Score: 366
Period size: 110 Copynumber: 2.4 Consensus size: 108
2986868 ACCTCCGGAT
* * *
2986878 AATTTTGTAAGACCTCCGGACATGATTTCTAAGACCTCTGGACATAATTTCGATTCGCGGTGTTG
1 AATTCTGTAAGACCTCAGG-CATGATTTCTAAGACCTCTGGACATAATTTCGATTCACGGTGTTG
2986943 TCCCGATCAATTCTTTATTTTTTGACTTACGATGTTATCTCAGTC
65 TCCCGATCAATTCTTTA-TTTTTGACTTACGATGTTATCTCAGTC
* *
2986988 AATTCTGTAAGACCTTCAGGCATGATTTCTAAGA-CTTTCGGGCATAATTTCGATTCACGGTGTT
1 AATTCTGTAAGACC-TCAGGCATGATTTCTAAGACCTCT-GGACATAATTTCGATTCACGGTGTT
* ** * * *
2987052 GTCTCGATTGATTCTTTATTTTTGACTTATGGTGTTATCTTAGTC
64 GTCCCGATCAATTCTTTATTTTTGACTTACGATGTTATCTCAGTC
*
2987097 AATTCTGTAAGACCTCTAGGCATGATTTTTAAGACCTCTGGACA
1 AATTCTGTAAGACCTC-AGGCATGATTTCTAAGACCTCTGGACA
2987141 ATTCTGTAAG
Statistics
Matches: 135, Mismatches: 14, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
108 2 0.01
109 61 0.45
110 68 0.50
111 4 0.03
ACGTcount: A:0.23, C:0.19, G:0.18, T:0.40
Consensus pattern (108 bp):
AATTCTGTAAGACCTCAGGCATGATTTCTAAGACCTCTGGACATAATTTCGATTCACGGTGTTGT
CCCGATCAATTCTTTATTTTTGACTTACGATGTTATCTCAGTC
Found at i:2987161 original size:21 final size:21
Alignment explanation
Indices: 2987096--2987161 Score: 71
Period size: 21 Copynumber: 3.1 Consensus size: 21
2987086 TTATCTTAGT
*
2987096 CAATTCTGTAAGACCTCTAGG
1 CAATTCTGTAAGACCTCTAGA
* *
2987117 CATGATT-TTTAAGACCTCTGGA
1 CA--ATTCTGTAAGACCTCTAGA
*
2987139 CAATTCTGTAAGACCTCCAGA
1 CAATTCTGTAAGACCTCTAGA
2987160 CA
1 CA
2987162 TGATTTTTGA
Statistics
Matches: 36, Mismatches: 6, Indels: 6
0.75 0.12 0.12
Matches are distributed among these distances:
20 3 0.08
21 16 0.44
22 14 0.39
23 3 0.08
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29
Consensus pattern (21 bp):
CAATTCTGTAAGACCTCTAGA
Found at i:2987164 original size:43 final size:43
Alignment explanation
Indices: 2987096--2987177 Score: 137
Period size: 43 Copynumber: 1.9 Consensus size: 43
2987086 TTATCTTAGT
* *
2987096 CAATTCTGTAAGACCTCTAGGCATGATTTTTAAGACCTCTGGA
1 CAATTCTGTAAGACCTCCAGACATGATTTTTAAGACCTCTGGA
*
2987139 CAATTCTGTAAGACCTCCAGACATGATTTTTGAGACCTC
1 CAATTCTGTAAGACCTCCAGACATGATTTTTAAGACCTC
2987178 CGAGCATAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (43 bp):
CAATTCTGTAAGACCTCCAGACATGATTTTTAAGACCTCTGGA
Found at i:2987178 original size:22 final size:22
Alignment explanation
Indices: 2987104--2987178 Score: 73
Period size: 22 Copynumber: 3.5 Consensus size: 22
2987094 GTCAATTCTG
* *
2987104 TAAGACCTCTAGGCATGATTTT
1 TAAGACCTCCAGACATGATTTT
** *
2987126 TAAGACCTCTGGACA--ATTCTG
1 TAAGACCTCCAGACATGATT-TT
2987147 TAAGACCTCCAGACATGATTTT
1 TAAGACCTCCAGACATGATTTT
*
2987169 TGAGACCTCC
1 TAAGACCTCC
2987179 GAGCATAATT
Statistics
Matches: 43, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
20 3 0.07
21 14 0.33
22 23 0.53
23 3 0.07
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (22 bp):
TAAGACCTCCAGACATGATTTT
Found at i:2987189 original size:22 final size:22
Alignment explanation
Indices: 2987149--2987190 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
2987139 CAATTCTGTA
*
2987149 AGACCTCCAGACATGATTTTTG
1 AGACCTCCAGACATAATTTTTG
2987171 AGACCTCC-GAGCATAATTTT
1 AGACCTCCAGA-CATAATTTT
2987191 GATTCGCGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 2 0.11
22 16 0.89
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.31
Consensus pattern (22 bp):
AGACCTCCAGACATAATTTTTG
Found at i:2987309 original size:43 final size:44
Alignment explanation
Indices: 2987248--2987330 Score: 123
Period size: 43 Copynumber: 1.9 Consensus size: 44
2987238 TTATCCCAGT
2987248 TAATTCTGTAAAACCTTCGAACATGATT-TCTAAGACCTTTAGG
1 TAATTCTGTAAAACCTTCGAACATGATTCTCTAAGACCTTTAGG
* ** *
2987291 TAATTCTGTAAGACCTTCGAGTATGATTCTGTAAGACCTT
1 TAATTCTGTAAAACCTTCGAACATGATTCTCTAAGACCTT
2987331 CGGGCATGAT
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
43 25 0.71
44 10 0.29
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.36
Consensus pattern (44 bp):
TAATTCTGTAAAACCTTCGAACATGATTCTCTAAGACCTTTAGG
Found at i:2987317 original size:152 final size:151
Alignment explanation
Indices: 2986987--2987329 Score: 411
Period size: 152 Copynumber: 2.2 Consensus size: 151
2986977 TTATCTCAGT
* * * *
2986987 CAATTCTGTAAGACCTTCAGGCATGATTTCTAAGACTTTCGGGCATAATTTCGATTCACGGTGTT
1 CAATTCTGTAAGACCTTCA-GCATGATTTCTAAGACCTCCGAGCATAATTTCGATTCACGATGTT
* * * ** * * *
2987052 GTCTCGATTGATTCTTTATTTTTGACTTATGGTGTTATCTTAGTCAATTCTGTAAGACCTCTAGG
65 GTCCCGATCGATTCTTTATTTCTGACTTATGGTGTTATCCCAGTCAATTCTGTAAAACCTCGAGA
*
2987117 CATGATTTTTAAGACCTCTGGA
130 CATGATTTCTAAGACCTCTGGA
* * * * *
2987139 CAATTCTGTAAGACCTCCAGACATGATTTTTGAGACCTCCGAGCATAATTTTGATTCGCGATGTT
1 CAATTCTGTAAGACCTTCAG-CATGATTTCTAAGACCTCCGAGCATAATTTCGATTCACGATGTT
*
2987204 GTCCCGATCGATTCTTTATTTCTGACTTATGGTGTTATCCCAGTTAATTCTGTAAAACCTTCGA-
65 GTCCCGATCGATTCTTTATTTCTGACTTATGGTGTTATCCCAGTCAATTCTGTAAAACC-TCGAG
*
2987268 ACATGATTTCTAAGACCTTTAGG-
129 ACATGATTTCTAAGACCTCT-GGA
* * *
2987291 TAATTCTGTAAGACCTTCGAGTATGATTCTGTAAGACCT
1 CAATTCTGTAAGACCTTC-AGCATGATT-TCTAAGACCT
2987330 TCGGGCATGA
Statistics
Matches: 161, Mismatches: 25, Indels: 9
0.83 0.13 0.05
Matches are distributed among these distances:
151 1 0.01
152 145 0.90
153 15 0.09
ACGTcount: A:0.24, C:0.19, G:0.18, T:0.38
Consensus pattern (151 bp):
CAATTCTGTAAGACCTTCAGCATGATTTCTAAGACCTCCGAGCATAATTTCGATTCACGATGTTG
TCCCGATCGATTCTTTATTTCTGACTTATGGTGTTATCCCAGTCAATTCTGTAAAACCTCGAGAC
ATGATTTCTAAGACCTCTGGA
Found at i:2987323 original size:23 final size:23
Alignment explanation
Indices: 2987250--2987341 Score: 91
Period size: 23 Copynumber: 4.1 Consensus size: 23
2987240 ATCCCAGTTA
* *
2987250 ATTCTGTAAAACCTTCGAACATG
1 ATTCTGTAAGACCTTCGAGCATG
* * * *
2987273 ATT-TCTAAGACCTT-TAG-GTA
1 ATTCTGTAAGACCTTCGAGCATG
*
2987293 ATTCTGTAAGACCTTCGAGTATG
1 ATTCTGTAAGACCTTCGAGCATG
*
2987316 ATTCTGTAAGACCTTCGGGCATG
1 ATTCTGTAAGACCTTCGAGCATG
2987339 ATT
1 ATT
2987342 TTTAAGATCT
Statistics
Matches: 54, Mismatches: 12, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
20 4 0.07
21 11 0.20
22 11 0.20
23 28 0.52
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.35
Consensus pattern (23 bp):
ATTCTGTAAGACCTTCGAGCATG
Found at i:2987353 original size:22 final size:22
Alignment explanation
Indices: 2987254--2987364 Score: 73
Period size: 22 Copynumber: 5.0 Consensus size: 22
2987244 CAGTTAATTC
* **
2987254 TGTAAAACCTTCGAACATGATT
1 TGTAAGACCTTCGGGCATGATT
* ** *
2987276 TCTAAGACCTTTAGG--TAATT
1 TGTAAGACCTTCGGGCATGATT
* *
2987296 CTGTAAGACCTTCGAGTATGATT
1 -TGTAAGACCTTCGGGCATGATT
2987319 CTGTAAGACCTTCGGGCATGATT
1 -TGTAAGACCTTCGGGCATGATT
* * * *
2987342 TTTAAGATCTTCAGGCATAATT
1 TGTAAGACCTTCGGGCATGATT
2987364 T
1 T
2987365 CGATTCGCAG
Statistics
Matches: 68, Mismatches: 18, Indels: 6
0.74 0.20 0.07
Matches are distributed among these distances:
20 4 0.06
21 11 0.16
22 28 0.41
23 25 0.37
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.36
Consensus pattern (22 bp):
TGTAAGACCTTCGGGCATGATT
Found at i:2987362 original size:175 final size:176
Alignment explanation
Indices: 2987141--2987462 Score: 452
Period size: 175 Copynumber: 1.8 Consensus size: 176
2987131 CCTCTGGACA
* * * *
2987141 ATTCTGTAAGACCTCCAGACATGATTTTTGAGACCTCCGAGCATAATTTTGATTCGC-GATGTTG
1 ATTCTGTAAGACCTCCAGACATGATTTTTAAGACCTCAGAGCATAATTTCGATTCGCAG-TGTTA
* * *
2987205 TCCCGATCGATTCTTTAT-TTCTGACTTATGGTGTTATCCCAGTTAATTCTGTAAAACCTTCGAA
65 TCCCGATCGATTCTTTATCTTCTGACTTATGGTGTTATCCCAATCAATTCTGTAAAACCTCCGAA
2987269 CATGATTTCTAAGACCTTTAGGTAATTCTGTAAGACCTTCGAGTATG
130 CATGATTTCTAAGACCTTTAGGTAATTCTGTAAGACCTTCGAGTATG
* * * *
2987316 ATTCTGTAAGACCTTCGGGCATGATTTTTAAGATCTTCAG-GCATAATTTCGATTCGCAGTGTTA
1 ATTCTGTAAGACCTCCAGACATGATTTTTAAGA-CCTCAGAGCATAATTTCGATTCGCAGTGTTA
* * * * * *
2987380 TCCCGATCGATTCTTTATCTTTTGACTTGTGGTGTTATTCCAATCGATTCTGTAAGACCTCCGGA
65 TCCCGATCGATTCTTTATCTTCTGACTTATGGTGTTATCCCAATCAATTCTGTAAAACCTCCGAA
2987445 CATGATTTCTAAGACCTT
130 CATGATTTCTAAGACCTT
2987463 CGGGTATAAT
Statistics
Matches: 127, Mismatches: 17, Indels: 5
0.85 0.11 0.03
Matches are distributed among these distances:
175 67 0.53
176 60 0.47
ACGTcount: A:0.24, C:0.20, G:0.18, T:0.38
Consensus pattern (176 bp):
ATTCTGTAAGACCTCCAGACATGATTTTTAAGACCTCAGAGCATAATTTCGATTCGCAGTGTTAT
CCCGATCGATTCTTTATCTTCTGACTTATGGTGTTATCCCAATCAATTCTGTAAAACCTCCGAAC
ATGATTTCTAAGACCTTTAGGTAATTCTGTAAGACCTTCGAGTATG
Found at i:2987508 original size:110 final size:109
Alignment explanation
Indices: 2987315--2987585 Score: 389
Period size: 110 Copynumber: 2.5 Consensus size: 109
2987305 CTTCGAGTAT
* * * *
2987315 GATTCTGTAAGACCTTCGGGCATGATTTTTAAGATCTTCAGGCATAATTTCGATTCGCAGTGTTA
1 GATTCTGTAAGACCTTCGGGCATGATTTCTAAGACCTTCGGGTATAATTTCGATTCGCAGTGTTA
* *
2987380 TCCCGATCGATTCTTTATCTTTTGACTTGTGGTGTTATTCCAATC
66 TCCCGATCGATTCTTTATCTTTTGACTTATGATGTTA-TCCAATC
* * * *
2987425 GATTCTGTAAGACCTCCGGACATGATTTCTAAGACCTTCGGGTATAATTTTGATTCGCGGTGTTA
1 GATTCTGTAAGACCTTCGGGCATGATTTCTAAGACCTTCGGGTATAATTTCGATTCGCAGTGTTA
* *
2987490 TCCCGATCGATTTTTTATCTTTTGACTTATGATGTTATCCAGTC
66 TCCCGATCGATTCTTTATCTTTTGACTTATGATGTTATCCAATC
* * *
2987534 GATTCTGTAAGACCTTTGGGCATGATTCTGTAAGACCTTCGGGTATGATTTC
1 GATTCTGTAAGACCTTCGGGCATGATT-TCTAAGACCTTCGGGTATAATTTC
2987586 TAAAGACCTC
Statistics
Matches: 142, Mismatches: 18, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
109 30 0.21
110 112 0.79
ACGTcount: A:0.21, C:0.19, G:0.20, T:0.40
Consensus pattern (109 bp):
GATTCTGTAAGACCTTCGGGCATGATTTCTAAGACCTTCGGGTATAATTTCGATTCGCAGTGTTA
TCCCGATCGATTCTTTATCTTTTGACTTATGATGTTATCCAATC
Found at i:2987631 original size:23 final size:23
Alignment explanation
Indices: 2987542--2987625 Score: 107
Period size: 23 Copynumber: 3.7 Consensus size: 23
2987532 TCGATTCTGT
** *
2987542 AAGACCTTTGGGCATGA-TTCTGT
1 AAGACCTCCGGGCATGATTTCT-A
* *
2987565 AAGACCTTCGGGTATGATTTCTA
1 AAGACCTCCGGGCATGATTTCTA
2987588 AAGACCTCCGGGCATGATTTCTA
1 AAGACCTCCGGGCATGATTTCTA
2987611 AAGACCTCCGGGCAT
1 AAGACCTCCGGGCAT
2987626 AGTTTCGATT
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
23 51 0.93
24 4 0.07
ACGTcount: A:0.25, C:0.23, G:0.24, T:0.29
Consensus pattern (23 bp):
AAGACCTCCGGGCATGATTTCTA
Found at i:2987725 original size:22 final size:22
Alignment explanation
Indices: 2987697--2987739 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
2987687 GTCGATTCTA
*
2987697 TAAGACCTCCGGGCATAAATTG
1 TAAGACCTCCGAGCATAAATTG
*
2987719 TAAGACCTTCGAGCATAAATT
1 TAAGACCTCCGAGCATAAATT
2987740 TGATTTACGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.26
Consensus pattern (22 bp):
TAAGACCTCCGAGCATAAATTG
Found at i:2987766 original size:265 final size:265
Alignment explanation
Indices: 2987293--2987783 Score: 662
Period size: 265 Copynumber: 1.9 Consensus size: 265
2987283 CCTTTAGGTA
* * * * *
2987293 ATTCTGTAAGACCTTCGAGTATGATTCTGTAAGACCTTCGGGCATGATTTTTAAGATCTTCAGGC
1 ATTCTGTAAGACCTTCGAGTATGATTCTGAAAGACCTCCGGGCATGATTTTAAAGACCTCCAGGC
* * *
2987358 ATAATTTCGATTCGCAGTGTTATCCCGATCGATTCTTTATCTTTTGACTTGTGGTGTTATTCCAA
66 ATAATTTCGATTCGCAGTGTTATCCCAATCGATTCTTTATCTTTCGACTTGCGGTGTTATTCCAA
* * * * * * * * *
2987423 TCGATTCTGTAAGACCTCCGGACATGATTTCTAAGACCTTCGGGTATAATTTTGATTCGCGGTGT
131 TCGATTCTATAAGACCTCCGGACATAAATTCTAAGACCTTCGAGCATAAATTTGATTCACGATAT
**
2987488 TATCCCGATCGATTTTTTATCTTTTGACTTATGATGTTATCCAGTCGATTCTGTAAGACCTTTGG
196 TATCCCGATCGATTCATTATCTTTTGACTTATGATGTTATCCAGTCGATTCTGTAAGACCTTTGG
2987553 GCATG
261 GCATG
* *
2987558 ATTCTGTAAGACCTTCGGGTATGATTTCT-AAAGACCTCCGGGCATGATTTCTAAAGACCTCCGG
1 ATTCTGTAAGACCTTCGAGTATGA-TTCTGAAAGACCTCCGGGCATGATTT-TAAAGACCTCCAG
* * *
2987622 GCATAGTTTCGATTCGCGGTGTTATCCCAATCGATTTTTTATCTTTCGACTTGCGGTGTTA-TCC
64 GCATAATTTCGATTCGCAGTGTTATCCCAATCGATTCTTTATCTTTCGACTTGCGGTGTTATTCC
* * * *
2987686 AGTCGATTCTATAAGACCTCCGGGCATAAATTGTAAGACCTTCGAGCATAAATTTGATTTACGAT
129 AATCGATTCTATAAGACCTCCGGACATAAATTCTAAGACCTTCGAGCATAAATTTGATTCACGAT
*** *
2987751 ATTATTTTGATCGATTCATTATTTTTTGACTTA
194 ATTATCCCGATCGATTCATTATCTTTTGACTTA
2987784 CGGTGTCATC
Statistics
Matches: 192, Mismatches: 32, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
265 124 0.65
266 68 0.35
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.39
Consensus pattern (265 bp):
ATTCTGTAAGACCTTCGAGTATGATTCTGAAAGACCTCCGGGCATGATTTTAAAGACCTCCAGGC
ATAATTTCGATTCGCAGTGTTATCCCAATCGATTCTTTATCTTTCGACTTGCGGTGTTATTCCAA
TCGATTCTATAAGACCTCCGGACATAAATTCTAAGACCTTCGAGCATAAATTTGATTCACGATAT
TATCCCGATCGATTCATTATCTTTTGACTTATGATGTTATCCAGTCGATTCTGTAAGACCTTTGG
GCATG
Found at i:2987966 original size:21 final size:19
Alignment explanation
Indices: 2987940--2987989 Score: 57
Period size: 21 Copynumber: 2.5 Consensus size: 19
2987930 TCTACTGTTT
*
2987940 TAATTTTAATAATAATAATAA
1 TAATTTTAATAAAAAT-AT-A
2987961 TAATTTTAA-AAAAATATA
1 TAATTTTAATAAAAATATA
2987979 TAATTATTAAT
1 TAATT-TTAAT
2987990 TATATAAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
18 6 0.23
19 6 0.23
20 5 0.19
21 9 0.35
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (19 bp):
TAATTTTAATAAAAATATA
Found at i:2987981 original size:27 final size:27
Alignment explanation
Indices: 2987950--2988004 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 27
2987940 TAATTTTAAT
2987950 AATA-ATAA-TAATAATT-T-TAAAAA
1 AATATATAATTAATAATTATATAAAAA
*
2987973 AATATATAATTATTAATTATATAAAAA
1 AATATATAATTAATAATTATATAAAAA
2988000 AATAT
1 AATAT
2988005 GAAAAGAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
23 4 0.15
24 4 0.15
25 7 0.26
26 1 0.04
27 11 0.41
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (27 bp):
AATATATAATTAATAATTATATAAAAA
Found at i:2989550 original size:16 final size:15
Alignment explanation
Indices: 2989520--2989630 Score: 68
Period size: 16 Copynumber: 7.2 Consensus size: 15
2989510 TTTTAAAACC
2989520 CCCTAAAAATCCAAAAT
1 CCCT-AAAAT-CAAAAT
*
2989537 CCCTTAAAT-ACAAAT
1 CCCTAAAATCA-AAAT
* *
2989552 CTCCTAAAATCCGAAAC
1 C-CCTAAAAT-CAAAAT
*
2989569 CCCTAAAATCTAAA-
1 CCCTAAAATCAAAAT
*
2989583 CCCAAAAATTCAAAAT
1 CCCTAAAA-TCAAAAT
*
2989599 CTCTAAAATTC-AAA-
1 CCCTAAAA-TCAAAAT
*
2989613 CCCTTAAATCAAAAT
1 CCCTAAAATCAAAAT
2989628 CCC
1 CCC
2989631 AAACCTTAAA
Statistics
Matches: 75, Mismatches: 11, Indels: 18
0.72 0.11 0.17
Matches are distributed among these distances:
13 2 0.03
14 17 0.23
15 20 0.27
16 28 0.37
17 8 0.11
ACGTcount: A:0.48, C:0.30, G:0.01, T:0.22
Consensus pattern (15 bp):
CCCTAAAATCAAAAT
Found at i:2989605 original size:30 final size:29
Alignment explanation
Indices: 2989571--2989628 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 29
2989561 TCCGAAACCC
2989571 CTAAAA-TCTAAACCCAAAAATTCAAAATCT
1 CTAAAATTC-AAACCCAAAAA-TCAAAATCT
**
2989601 CTAAAATTCAAACCCTTAAATCAAAATC
1 CTAAAATTCAAACCCAAAAATCAAAATC
2989629 CCAAACCTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 8 0.32
30 15 0.60
31 2 0.08
ACGTcount: A:0.52, C:0.24, G:0.00, T:0.24
Consensus pattern (29 bp):
CTAAAATTCAAACCCAAAAATCAAAATCT
Found at i:2989647 original size:14 final size:15
Alignment explanation
Indices: 2989623--2989676 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 15
2989613 CCCTTAAATC
2989623 AAAATCCCAAACCTT
1 AAAATCCCAAACCTT
*
2989638 AAAA-CCCAAACCCT
1 AAAATCCCAAACCTT
*
2989652 AAAATCTCCAAA-CTC
1 AAAATC-CCAAACCTT
2989667 AAAA-CCCAAA
1 AAAATCCCAAA
2989677 ACCCAAAACC
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
13 5 0.15
14 14 0.41
15 10 0.29
16 5 0.15
ACGTcount: A:0.52, C:0.35, G:0.00, T:0.13
Consensus pattern (15 bp):
AAAATCCCAAACCTT
Found at i:2989655 original size:29 final size:29
Alignment explanation
Indices: 2989622--2989684 Score: 85
Period size: 29 Copynumber: 2.2 Consensus size: 29
2989612 ACCCTTAAAT
*
2989622 CAAAATC-CCAAACCTTAAAACCC-AAACC
1 CAAAATCTCCAAA-CTCAAAACCCAAAACC
2989650 CTAAAATCTCCAAACTCAAAACCCAAAACC
1 C-AAAATCTCCAAACTCAAAACCCAAAACC
2989680 CAAAA
1 CAAAA
2989685 CCTTTCATAT
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
28 1 0.03
29 19 0.61
30 11 0.35
ACGTcount: A:0.52, C:0.37, G:0.00, T:0.11
Consensus pattern (29 bp):
CAAAATCTCCAAACTCAAAACCCAAAACC
Found at i:2989683 original size:14 final size:13
Alignment explanation
Indices: 2989622--2989686 Score: 58
Period size: 14 Copynumber: 4.5 Consensus size: 13
2989612 ACCCTTAAAT
2989622 CAAAATCCCAAACC
1 CAAAA-CCCAAACC
*
2989636 TTAAAACCCAAACC
1 -CAAAACCCAAACC
*
2989650 CTAAAATCTCCAAACT
1 C-AAAA-C-CCAAACC
2989666 CAAAACCCAAAACC
1 CAAAACCC-AAACC
2989680 CAAAACC
1 CAAAACC
2989687 TTTCATATCC
Statistics
Matches: 42, Mismatches: 4, Indels: 9
0.76 0.07 0.16
Matches are distributed among these distances:
13 2 0.05
14 24 0.57
15 9 0.21
16 7 0.17
ACGTcount: A:0.51, C:0.38, G:0.00, T:0.11
Consensus pattern (13 bp):
CAAAACCCAAACC
Found at i:2992954 original size:13 final size:14
Alignment explanation
Indices: 2992936--2992966 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
2992926 CGCTCGGTTC
2992936 ACCAATTTCCTC-A
1 ACCAATTTCCTCGA
2992949 ACCAATTTCCTCGA
1 ACCAATTTCCTCGA
2992963 ACCA
1 ACCA
2992967 TTCTCACACA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.71
14 5 0.29
ACGTcount: A:0.32, C:0.39, G:0.03, T:0.26
Consensus pattern (14 bp):
ACCAATTTCCTCGA
Found at i:2996166 original size:20 final size:20
Alignment explanation
Indices: 2996141--2996178 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
2996131 TTTATGAATA
2996141 TTTTTAATCACAATTATAAT
1 TTTTTAATCACAATTATAAT
*
2996161 TTTTTAATTACAATTATA
1 TTTTTAATCACAATTATA
2996179 TTAATCTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.39, C:0.08, G:0.00, T:0.53
Consensus pattern (20 bp):
TTTTTAATCACAATTATAAT
Found at i:2999520 original size:17 final size:17
Alignment explanation
Indices: 2999500--2999536 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
2999490 ACAAAAATAT
* *
2999500 AAAAATACAAAATACAA
1 AAAAATAAAAAAAACAA
2999517 AAAAATAAAAAAAACAA
1 AAAAATAAAAAAAACAA
2999534 AAA
1 AAA
2999537 GAGGGAGCTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.84, C:0.08, G:0.00, T:0.08
Consensus pattern (17 bp):
AAAAATAAAAAAAACAA
Found at i:3001167 original size:13 final size:13
Alignment explanation
Indices: 3001139--3001180 Score: 50
Period size: 14 Copynumber: 3.2 Consensus size: 13
3001129 TTTTTCCTTC
*
3001139 AAAAATTTAAATTA
1 AAAAAATTAAA-TA
3001153 AAAAAATTAAATA
1 AAAAAATTAAATA
*
3001166 AAACAATT-AATA
1 AAAAAATTAAATA
3001178 AAA
1 AAA
3001181 TTTCTAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
12 7 0.27
13 9 0.35
14 10 0.38
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.26
Consensus pattern (13 bp):
AAAAAATTAAATA
Found at i:3012969 original size:48 final size:48
Alignment explanation
Indices: 3012912--3013265 Score: 307
Period size: 48 Copynumber: 7.0 Consensus size: 48
3012902 ATTTGAAGAA
** * *
3012912 CAGATGAGA-TTTTAAAGTTGTTAAGCCTCTATTTAGAGGAGCTTTTTT
1 CAGATGAGATTTTTAAAGTTGTTAAGCCTCTGCTGAGATGAGC-TTTTT
*
3012960 AAGATGAGATTTTTAAAGTTGTTGAA-CCTCTGCTGAGATGAGCCTTTTT
1 CAGATGAGATTTTTAAAGTTGTT-AAGCCTCTGCTGAGATGAG-CTTTTT
* * * * *
3013009 CAGATTTTAAATTTTTTAAAGTTGTTGAGTCTCTGCTGATATGAGCTTTTT
1 CAGA--TGAGA-TTTTTAAAGTTGTTAAGCCTCTGCTGAGATGAGCTTTTT
* * * * *
3013060 CAGATGAAATTTTTAAAGTTGTTTAGCCTTTGTTTAGATGAGCTTTTT
1 CAGATGAGATTTTTAAAGTTGTTAAGCCTCTGCTGAGATGAGCTTTTT
*
3013108 CAGATGAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGATGAGCCTTTTT
1 CAGATGAGATTTTTAAAGTTGTTAAGCCTCTGCTGAGATGAG-CTTTTT
* * * * * * *
3013157 CATATTTTAAATTTTTAAAAGTTGTTAAGCTTTTACTGAGATAAGCTTTTT
1 CAGA--TGAGATTTTT-AAAGTTGTTAAGCCTCTGCTGAGATGAGCTTTTT
* *
3013208 CAAGATGAGAATTTTTTTTTAAAAGTTGTTAAGCCTTTGCTGAAATGAGCCTTTTT
1 C-AGATGAG-A----TTTTT-AAAGTTGTTAAGCCTCTGCTGAGATGAG-CTTTTT
3013264 CA
1 CA
3013266 AATTTTAAAC
Statistics
Matches: 250, Mismatches: 38, Indels: 29
0.79 0.12 0.09
Matches are distributed among these distances:
48 78 0.31
49 46 0.18
50 5 0.02
51 30 0.12
52 53 0.21
55 31 0.12
56 7 0.03
ACGTcount: A:0.27, C:0.11, G:0.19, T:0.44
Consensus pattern (48 bp):
CAGATGAGATTTTTAAAGTTGTTAAGCCTCTGCTGAGATGAGCTTTTT
Found at i:3013099 original size:100 final size:96
Alignment explanation
Indices: 3012912--3013265 Score: 298
Period size: 100 Copynumber: 3.5 Consensus size: 96
3012902 ATTTGAAGAA
* * ** * * * *
3012912 CAGATGAGA-TTTTAAAGTTGTTAAGCCTCTATTTAGAGGAGCTTTTTTAAGATGAGATTTTTAA
1 CAGATGAAATTTTTAAAGTTGTTGAGCCTCTGCTGAGATGAGC-TTTTTCAGATGAAATTTTTAA
3012976 AGTTGTTGAACCTCTGCTGAGATGAGCCTTTTT
65 AGTTGTTGAACCTCTGCTGAGATGAG-CTTTTT
* * *
3013009 CAGATTTTAAATTTTTTAAAGTTGTTGAGTCTCTGCTGATATGAGCTTTTTCAGATGAAATTTTT
1 CAGA--TGAAA-TTTTTAAAGTTGTTGAGCCTCTGCTGAGATGAGCTTTTTCAGATGAAATTTTT
* * * * *
3013074 AAAGTTGTTTAGCCTTTGTTTAGATGAGCTTTTT
63 AAAGTTGTTGAACCTCTGCTGAGATGAGCTTTTT
* * *
3013108 CAGATGAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGATGAGCCTTTTTCATATTTTAAATTTTT
1 CAGATGAAATTTTTAAAGTTGTTGAGCCTCTGCTGAGATGAG-CTTTTTCAGA--TGAAATTTTT
* * * *
3013173 AAAAGTTGTT-AAGCTTTTACTGAGATAAGCTTTTT
63 -AAAGTTGTTGAA-CCTCTGCTGAGATGAGCTTTTT
* * *
3013208 CAAGATGAGAATTTTTTTTTAAAAGTTGTTAAGCCTTTGCTGAAATGAGCCTTTTTCA
1 C-AGATGA-AA----TTTTT-AAAGTTGTTGAGCCTCTGCTGAGATGAG-CTTTTTCA
3013266 AATTTTAAAC
Statistics
Matches: 209, Mismatches: 32, Indels: 22
0.79 0.12 0.08
Matches are distributed among these distances:
96 31 0.15
97 16 0.08
99 23 0.11
100 67 0.32
101 32 0.15
102 1 0.00
106 5 0.02
107 34 0.16
ACGTcount: A:0.27, C:0.11, G:0.19, T:0.44
Consensus pattern (96 bp):
CAGATGAAATTTTTAAAGTTGTTGAGCCTCTGCTGAGATGAGCTTTTTCAGATGAAATTTTTAAA
GTTGTTGAACCTCTGCTGAGATGAGCTTTTT
Found at i:3013150 original size:148 final size:149
Alignment explanation
Indices: 3012912--3013223 Score: 450
Period size: 148 Copynumber: 2.1 Consensus size: 149
3012902 ATTTGAAGAA
*
3012912 CAGATGAGA-TTTTAAAGTTGTTAAGCCTCTATTTAGAGGAGCTTTTTTAAGATGAGATTTTTAA
1 CAGATGAAATTTTTAAAGTTGTTAAGCCTCTATTTAGAGGAGCTTTTTTAAGATGAGATTTTTAA
* *
3012976 AGTTGTTGAACCTCTGCTGAGATGAGCCTTTTTCAGATTTTAAATTTTTTAAAGTTGTTGAG-TC
66 AGTTGTTGAACCTCTGCTGAGATGAGCCTTTTTCAGATTTTAAATTTTTAAAAGTTGTTAAGCT-
* * *
3013040 TCTGCTGATATGAGCTTTTT
130 TCTACTGAGATAAGCTTTTT
* * * * *
3013060 CAGATGAAATTTTTAAAGTTGTTTAGCCTTTGTTTAGATGAGC-TTTTTCAGATGAGATTTTTAA
1 CAGATGAAATTTTTAAAGTTGTTAAGCCTCTATTTAGAGGAGCTTTTTTAAGATGAGATTTTTAA
* *
3013124 AGTTGTTGAGCCTCTGCTGAGATGAGCCTTTTTCATATTTTAAATTTTTAAAAGTTGTTAAGCTT
66 AGTTGTTGAACCTCTGCTGAGATGAGCCTTTTTCAGATTTTAAATTTTTAAAAGTTGTTAAGCTT
*
3013189 TTACTGAGATAAGCTTTTT
131 CTACTGAGATAAGCTTTTT
3013208 CAAGATGAGAATTTTT
1 C-AGATGA-AATTTTT
3013224 TTTTAAAAGT
Statistics
Matches: 146, Mismatches: 14, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
148 103 0.71
149 36 0.25
150 7 0.05
ACGTcount: A:0.27, C:0.10, G:0.19, T:0.44
Consensus pattern (149 bp):
CAGATGAAATTTTTAAAGTTGTTAAGCCTCTATTTAGAGGAGCTTTTTTAAGATGAGATTTTTAA
AGTTGTTGAACCTCTGCTGAGATGAGCCTTTTTCAGATTTTAAATTTTTAAAAGTTGTTAAGCTT
CTACTGAGATAAGCTTTTT
Found at i:3013256 original size:107 final size:101
Alignment explanation
Indices: 3012968--3013288 Score: 323
Period size: 100 Copynumber: 3.1 Consensus size: 101
3012958 TTAAGATGAG
* * * * *
3012968 ATTTTT-AAAGTTGTTGAA-CCTCTGCTGAGATGAGCCTTTTTCAGATTTTAAATTTTTTAAAGT
1 ATTTTTAAAAGTTGTT-AAGCCTTTACTGAGATAAG-CTTTTTCAGA--TGAGATTTTTTAAAGT
* * * *
3013031 TGTTGAGTCTCTGCTGATATGAG-CTTTTTCAGA--TGAA
62 TGTTGAGCCTCTGCTGAAATGAGCCTTTTTCAAATTTTAA
* ** * *
3013068 ATTTTT-AAAGTTGTTTAGCCTTTGTTTAGATGAGCTTTTTCAGATGAGA-TTTTTAAAGTTGTT
1 ATTTTTAAAAGTTGTTAAGCCTTTACTGAGATAAGCTTTTTCAGATGAGATTTTTTAAAGTTGTT
* *
3013131 GAGCCTCTGCTGAGATGAGCCTTTTTCATATTTTAA
66 GAGCCTCTGCTGAAATGAGCCTTTTTCAAATTTTAA
*
3013167 ATTTTTAAAAGTTGTTAAGCTTTTACTGAGATAAGCTTTTTCAAGATGAGAATTTTTTTTTAAAA
1 ATTTTTAAAAGTTGTTAAGCCTTTACTGAGATAAGCTTTTTC-AGATGAG-A---TTTTTT-AAA
* *
3013232 GTTGTTAAGCCTTTGCTGAAATGAGCCTTTTTCAAATTTTAA
60 GTTGTTGAGCCTCTGCTGAAATGAGCCTTTTTCAAATTTTAA
*
3013274 ACTTTTAAAAGTTGT
1 ATTTTTAAAAGTTGT
3013289 CGAGCCTTAA
Statistics
Matches: 188, Mismatches: 21, Indels: 17
0.83 0.09 0.08
Matches are distributed among these distances:
96 31 0.16
97 12 0.06
99 20 0.11
100 57 0.30
101 7 0.04
102 1 0.01
106 5 0.03
107 55 0.29
ACGTcount: A:0.27, C:0.11, G:0.17, T:0.45
Consensus pattern (101 bp):
ATTTTTAAAAGTTGTTAAGCCTTTACTGAGATAAGCTTTTTCAGATGAGATTTTTTAAAGTTGTT
GAGCCTCTGCTGAAATGAGCCTTTTTCAAATTTTAA
Found at i:3013296 original size:52 final size:51
Alignment explanation
Indices: 3012969--3013296 Score: 299
Period size: 52 Copynumber: 6.4 Consensus size: 51
3012959 TAAGATGAGA
* * *
3012969 TTTTTAAAGTTGTTGAACCTCTGCTGAGATGAGCCTTTTTCAGATTTTAAAT
1 TTTTTAAAGTTGTTGAGCCTTTGCTGAGATGAG-CTTTTTCAGATTTGAAAT
* * *
3013021 TTTTTAAAGTTGTTGAGTCTCTGCTGATATGAGCTTTTTCAGA--TGAAA-
1 TTTTTAAAGTTGTTGAGCCTTTGCTGAGATGAGCTTTTTCAGATTTGAAAT
* * * *
3013069 TTTTTAAAGTTGTTTAGCCTTTGTTTAGATGAGCTTTTTCAGA--TGAGA-
1 TTTTTAAAGTTGTTGAGCCTTTGCTGAGATGAGCTTTTTCAGATTTGAAAT
* * *
3013117 TTTTTAAAGTTGTTGAGCCTCTGCTGAGATGAGCCTTTTTCATATTTTAAAT
1 TTTTTAAAGTTGTTGAGCCTTTGCTGAGATGAG-CTTTTTCAGATTTGAAAT
* * * * * ** *
3013169 TTTTAAAAGTTGTTAAGCTTTTACTGAGATAAGCTTTTTCAAGATGAGAATTTT
1 TTTTTAAAGTTGTTGAGCCTTTGCTGAGATGAGCTTTTTC-AGATTTGAA--AT
* * * * *
3013223 TTTTTAAAAGTTGTTAAGCCTTTGCTGAAATGAGCCTTTTTCAAATTTTAAAC
1 TTTTT-AAAGTTGTTGAGCCTTTGCTGAGATGAG-CTTTTTCAGATTTGAAAT
* *
3013276 TTTTAAAAGTTGTCGAGCCTT
1 TTTTTAAAGTTGTTGAGCCTT
3013297 AAGTGAGAGG
Statistics
Matches: 224, Mismatches: 43, Indels: 18
0.79 0.15 0.06
Matches are distributed among these distances:
48 70 0.31
49 13 0.06
51 20 0.09
52 76 0.34
53 4 0.02
54 5 0.02
55 29 0.13
56 7 0.03
ACGTcount: A:0.26, C:0.11, G:0.18, T:0.45
Consensus pattern (51 bp):
TTTTTAAAGTTGTTGAGCCTTTGCTGAGATGAGCTTTTTCAGATTTGAAAT
Found at i:3013667 original size:17 final size:17
Alignment explanation
Indices: 3013647--3013684 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
3013637 AATAAAATAT
3013647 AAAAAATAG-AAAAACA
1 AAAAAATAGAAAAAACA
3013663 AAAAAATAGAAAAAACA
1 AAAAAATAGAAAAAACA
3013680 AAAAA
1 AAAAA
3013685 GGGGGGGGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 9 0.43
17 12 0.57
ACGTcount: A:0.84, C:0.05, G:0.05, T:0.05
Consensus pattern (17 bp):
AAAAAATAGAAAAAACA
Found at i:3015073 original size:18 final size:17
Alignment explanation
Indices: 3015050--3015097 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 17
3015040 TCTTATAAAA
*
3015050 TAATAAATAAAAACTAAT
1 TAATAAATAAAAA-TAAG
*
3015068 TAATAAATTAAGAATAAG
1 TAATAAA-TAAAAATAAG
3015086 TAATAATATAAA
1 TAATAA-ATAAA
3015098 TAAAGAAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
18 19 0.76
19 6 0.24
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.29
Consensus pattern (17 bp):
TAATAAATAAAAATAAG
Found at i:3015567 original size:19 final size:20
Alignment explanation
Indices: 3015531--3015569 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
3015521 ATTTTTCTCG
3015531 AATAAAAATAAAACATAATT
1 AATAAAAATAAAACATAATT
3015551 AATAAATAA-AAAA-ATAATT
1 AATAAA-AATAAAACATAATT
3015570 TCTAATAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.33
20 10 0.56
21 2 0.11
ACGTcount: A:0.72, C:0.03, G:0.00, T:0.26
Consensus pattern (20 bp):
AATAAAAATAAAACATAATT
Found at i:3015575 original size:26 final size:27
Alignment explanation
Indices: 3015546--3015597 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
3015536 AAATAAAACA
*
3015546 TAATTAATAAAT-AAAAAAATAATTTC
1 TAATAAATAAATCAAAAAAATAATTTC
*
3015572 TAATAAATAAATCAAAAAAATTATTT
1 TAATAAATAAATCAAAAAAATAATTT
3015598 TTTAAACACT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 11 0.48
27 12 0.52
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.35
Consensus pattern (27 bp):
TAATAAATAAATCAAAAAAATAATTTC
Found at i:3015883 original size:14 final size:14
Alignment explanation
Indices: 3015848--3015880 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
3015838 TTGATGACGA
*
3015848 CTTTATTTTTCATT
1 CTTTAATTTTCATT
3015862 CTTTAATTTTCATT
1 CTTTAATTTTCATT
3015876 -TTTAA
1 CTTTAA
3015881 ATTCGTCATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.21, C:0.12, G:0.00, T:0.67
Consensus pattern (14 bp):
CTTTAATTTTCATT
Found at i:3026007 original size:20 final size:20
Alignment explanation
Indices: 3025962--3026021 Score: 63
Period size: 20 Copynumber: 3.1 Consensus size: 20
3025952 AAATAATTTT
* *
3025962 TTTAATTATTTATTTA-ATT
1 TTTAATTATTTATATATATA
3025981 TTATAATTATTTATATATATA
1 TT-TAATTATTTATATATATA
*
3026002 TTTAA-T-TTTATATTTATA
1 TTTAATTATTTATATATATA
3026020 TT
1 TT
3026022 AAAAATAATA
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
18 13 0.36
19 3 0.08
20 16 0.44
21 4 0.11
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (20 bp):
TTTAATTATTTATATATATA
Found at i:3033135 original size:3 final size:3
Alignment explanation
Indices: 3033129--3033170 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
3033119 ATTCTATTTC
3033129 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
3033171 ATTTTTTTCT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:3033307 original size:22 final size:21
Alignment explanation
Indices: 3033277--3033335 Score: 55
Period size: 22 Copynumber: 2.6 Consensus size: 21
3033267 AGGTTATGTA
*
3033277 TTATGTATTATTTAATTTTAAT
1 TTATCTATTATTT-ATTTTAAT
* *
3033299 TTATCTATTAATTTTTTTTGAT
1 TTATCTATT-ATTTATTTTAAT
3033321 TTATCTGATTTATTT
1 TTATCT-A-TTATTT
3033336 TCATCTGATT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
22 20 0.65
23 9 0.29
24 2 0.06
ACGTcount: A:0.25, C:0.03, G:0.05, T:0.66
Consensus pattern (21 bp):
TTATCTATTATTTATTTTAAT
Found at i:3033336 original size:22 final size:22
Alignment explanation
Indices: 3033292--3033336 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
3033282 TATTATTTAA
3033292 TTTTAATTTATCTATTAATTTT
1 TTTTAATTTATCTATTAATTTT
* *
3033314 TTTTGATTTATCTGATTTATTTT
1 TTTTAATTTATCT-ATTAATTTT
3033337 CATCTGATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 12 0.60
23 8 0.40
ACGTcount: A:0.22, C:0.04, G:0.04, T:0.69
Consensus pattern (22 bp):
TTTTAATTTATCTATTAATTTT
Found at i:3034252 original size:5 final size:5
Alignment explanation
Indices: 3034235--3034312 Score: 61
Period size: 5 Copynumber: 14.8 Consensus size: 5
3034225 TTAATGTTCT
* *
3034235 TTTTA TCTTTA TTTTA TTTTTA TTTTTG TTTTA CTTTTT TTTTA TTTTCA
1 TTTTA T-TTTA TTTTA -TTTTA -TTTTA TTTTA -TTTTA TTTTA TTTT-A
*
3034285 CTTTTA TTTTG TTTTA --TTA TTTTA TTTT
1 -TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
3034313 CTTTAAATAA
Statistics
Matches: 60, Mismatches: 6, Indels: 14
0.75 0.08 0.17
Matches are distributed among these distances:
3 3 0.05
5 32 0.53
6 21 0.35
7 4 0.07
ACGTcount: A:0.14, C:0.05, G:0.03, T:0.78
Consensus pattern (5 bp):
TTTTA
Found at i:3034256 original size:17 final size:16
Alignment explanation
Indices: 3034234--3034312 Score: 70
Period size: 17 Copynumber: 4.6 Consensus size: 16
3034224 TTTAATGTTC
3034234 TTTTTATCTTTATTTTA
1 TTTTTAT-TTTATTTTA
*
3034251 TTTTTATTTTTGTTTTA
1 TTTTTA-TTTTATTTTA
3034268 CTTTTT-TTTTATTTTCA
1 -TTTTTATTTTATTTT-A
* *
3034285 CTTTTATTTTGTTTTA
1 TTTTTATTTTATTTTA
3034301 TTATTTTATTTT
1 -T-TTTTATTTT
3034313 CTTTAAATAA
Statistics
Matches: 51, Mismatches: 5, Indels: 11
0.76 0.07 0.16
Matches are distributed among these distances:
16 13 0.25
17 23 0.45
18 15 0.29
ACGTcount: A:0.14, C:0.05, G:0.03, T:0.78
Consensus pattern (16 bp):
TTTTTATTTTATTTTA
Found at i:3034260 original size:22 final size:21
Alignment explanation
Indices: 3034235--3034302 Score: 59
Period size: 22 Copynumber: 3.1 Consensus size: 21
3034225 TTAATGTTCT
3034235 TTTTATCTTTATTTTATTTTTA
1 TTTTATCTTTATTTT-TTTTTA
*
3034257 TTTT-TGTTTTACTTTTTTTTTA
1 TTTTAT-CTTTA-TTTTTTTTTA
*
3034279 TTTTCA-CTTTTATTTTGTTTTA
1 TTTT-ATC-TTTATTTTTTTTTA
3034301 TT
1 TT
3034303 ATTTTATTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 10
0.75 0.06 0.20
Matches are distributed among these distances:
21 1 0.03
22 29 0.76
23 8 0.21
ACGTcount: A:0.13, C:0.06, G:0.03, T:0.78
Consensus pattern (21 bp):
TTTTATCTTTATTTTTTTTTA
Found at i:3034389 original size:58 final size:57
Alignment explanation
Indices: 3034327--3034784 Score: 411
Period size: 58 Copynumber: 7.7 Consensus size: 57
3034317 AAATAAAATC
*
3034327 CAAAAAAATATTTTTGGGAAAAAGTTGAAAGTATCATTTTTTCTTAAAAATAAATTTT
1 CAAAAAAATATTTTTGGG-AAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTT
* * * *
3034385 CAAAAAAAAAGTTTTTTTTTAGGAAAAGTTGAAAGTCTCAA-TTTTCTTCGAAAATCAAAGTTTT
1 C--AAAAAAA---TATTTTTGGGAAAAGTTGAAAGTATCAATTTTTCTT-AAAAAT-AAA-TTTT
* * *
3034449 C-AAAAAATATTTTTGGAGAAAAATTGAAAGCATCAATTTTCCTTAAAAATAAATTTT
1 CAAAAAAATATTTTTGG-GAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTT
* * * **
3034506 CAAAAAAAAAAAGGTTTTTGAGGAACAGTTGAAAGTATCAATTTTCCTCGAAAATCAAAGTTTT
1 C--AAAAAAATA--TTTTTG-GGAAAAGTTGAAAGTATCAATTTTTCTTAAAAAT-AAA-TTTT
* * * * * *
3034570 C-AAAAAATATTTTCGGAAAAATTTGAAAGTATCAATTTTCCTAAAAAAATGAATTTT
1 CAAAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTTCT-TAAAAATAAATTTT
** *
3034627 C-AAAAAAGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTTTTTAAAAATAAATTTT
1 CAAAAAAATATTTTTG-GGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTT
* * ** * *
3034684 TAAAAAATAAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTCGAAATTAAAGTTT
1 CAAAAAA-ATATTTTTG-GGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTT
* * *
3034743 CAAAAGAATAATTTTGGAAAATAGTTGAAAGTATCAATTTTT
1 CAAAAAAATATTTTTGGGAAA-AGTTGAAAGTATCAATTTTT
3034785 TCTGCACAAG
Statistics
Matches: 329, Mismatches: 48, Indels: 46
0.78 0.11 0.11
Matches are distributed among these distances:
57 37 0.11
58 92 0.28
59 80 0.24
60 20 0.06
61 20 0.06
62 55 0.17
63 15 0.05
64 10 0.03
ACGTcount: A:0.45, C:0.07, G:0.12, T:0.36
Consensus pattern (57 bp):
CAAAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTT
Found at i:3034462 original size:121 final size:119
Alignment explanation
Indices: 3034329--3034783 Score: 520
Period size: 121 Copynumber: 3.8 Consensus size: 119
3034319 ATAAAATCCA
* *
3034329 AAAAAATATTTTTGGGAAAAAGTTGAAAGTATCATTTTTTCTTAAAAATAAATTTTCAAAAAAAA
1 AAAAAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAAA
* * *
3034394 AGTTTTTTTTTAGGAAAAGTTGAAAGTCTCAATTTTCTTCGAAAATCAAAGTTTTC
66 AG--GTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCTTCGAAAATCAAAGTTTTC
*
3034450 AAAAAATATTTTTGGAGAAAAA-TTGAAAGCATCAATTTTCCTTAAAAATAAATTTTCAAAAAAA
1 AAAAAATATTTTTGG-GAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC--AAAAA
* *
3034514 AAAAGGTTTTTGAGGAACAGTTGAAAGTATCAATTTTCCTCGAAAATCAAAGTTTTC
63 AAAAGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCTTCGAAAATCAAAGTTTTC
* * * *
3034571 AAAAAATA-TTTTCGGAAAAATTTGAAAGTATCAATTTTCCTAAAAAAATGAATTTTC---AAAA
1 AAAAAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTTCCT-TAAAAATAAATTTTCAAAAAAA
* ** *
3034632 AAGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTTTTTAAAAAT-AAA-TTTTT
65 AAGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCTTCGAAAATCAAAGTTTTC
* ** * *
3034685 AAAAAATAAATTTTTGAGG-AAAAGTTGAAAGTATCAATTTTTCTCGAAATTAAAGTTTCAAAAG
1 AAAAAAT--ATTTTTG-GGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAA-
* *
3034749 AATAA---TTTTG-GAAAATAGTTGAAAGTATCAATTTT
62 AAAAAGGTTTTTGAGGAAA-AGTTGAAAGTATCAATTTT
3034784 TTCTGCACAA
Statistics
Matches: 292, Mismatches: 28, Indels: 32
0.83 0.08 0.09
Matches are distributed among these distances:
114 11 0.04
115 3 0.01
116 59 0.20
117 51 0.17
118 2 0.01
119 7 0.02
120 28 0.10
121 115 0.39
122 6 0.02
123 10 0.03
ACGTcount: A:0.45, C:0.07, G:0.12, T:0.36
Consensus pattern (119 bp):
AAAAAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAAA
AGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCTTCGAAAATCAAAGTTTTC
Found at i:3034689 original size:15 final size:15
Alignment explanation
Indices: 3034665--3034699 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
3034655 AGTATCAATT
*
3034665 TTTTTTAAAAATAAA
1 TTTTTAAAAAATAAA
3034680 TTTTTAAAAAATAAA
1 TTTTTAAAAAATAAA
3034695 TTTTT
1 TTTTT
3034700 GAGGAAAAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (15 bp):
TTTTTAAAAAATAAA
Found at i:3034826 original size:9 final size:9
Alignment explanation
Indices: 3034814--3034842 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
3034804 TCTTTTCTTC
3034814 TTTTTTTAT
1 TTTTTTTAT
3034823 TTTTTTTAT
1 TTTTTTTAT
3034832 TTTTTTTAT
1 TTTTTTTAT
3034841 TT
1 TT
3034843 ATGTTAAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.10, C:0.00, G:0.00, T:0.90
Consensus pattern (9 bp):
TTTTTTTAT
Found at i:3050094 original size:20 final size:19
Alignment explanation
Indices: 3050066--3050110 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 19
3050056 CTTATTAAAG
* *
3050066 ATATTTTTACAATGAAAAAA
1 ATATGTTTAAAAT-AAAAAA
3050086 ATATGTTTAAAATAAAAAA
1 ATATGTTTAAAATAAAAAA
3050105 AT-TGTT
1 ATATGTT
3050111 ATATTATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 4 0.17
19 8 0.35
20 11 0.48
ACGTcount: A:0.53, C:0.02, G:0.07, T:0.38
Consensus pattern (19 bp):
ATATGTTTAAAATAAAAAA
Found at i:3050606 original size:30 final size:29
Alignment explanation
Indices: 3050572--3050636 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
3050562 ACCCTTAAAT
*
3050572 TTTAATTAACACCCAAGTAAAATTTTAATC
1 TTTAATTAACACCCAAAT-AAATTTTAATC
* * * *
3050602 TTTAATTTATATCCAAATAAATTTTAATT
1 TTTAATTAACACCCAAATAAATTTTAATC
3050631 TTTAAT
1 TTTAAT
3050637 ATGTATTTAG
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 16 0.53
30 14 0.47
ACGTcount: A:0.42, C:0.11, G:0.02, T:0.46
Consensus pattern (29 bp):
TTTAATTAACACCCAAATAAATTTTAATC
Found at i:3051401 original size:26 final size:25
Alignment explanation
Indices: 3051319--3051404 Score: 68
Period size: 26 Copynumber: 3.3 Consensus size: 25
3051309 ATTTATGAAT
*
3051319 TTATCATTAGATATGAATTAGAAGAA
1 TTATCATTAGATATAAATTAG-AGAA
* * *
3051345 TTGTCATCA-ATTTATAAATTCATA-AA
1 TTATCATTAGA--TATAAATT-AGAGAA
3051371 TTTATCATTAGATATAAATTAGAGAA
1 -TTATCATTAGATATAAATTAGAGAA
3051397 GTTATCAT
1 -TTATCAT
3051405 CAATTTTTTT
Statistics
Matches: 46, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
25 3 0.07
26 26 0.57
27 15 0.33
28 2 0.04
ACGTcount: A:0.43, C:0.07, G:0.10, T:0.40
Consensus pattern (25 bp):
TTATCATTAGATATAAATTAGAGAA
Done.