Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19866354
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 74000 characters in sequence are not A, C, G, or T
File 26 of 100
Found at i:7481809 original size:22 final size:23
Alignment explanation
Indices: 7481756--7481808 Score: 74
Period size: 21 Copynumber: 2.3 Consensus size: 23
7481746 GTCGTATTAA
7481756 TAATTTTTAATTTTTTTATTGTTT
1 TAATTTTTAA-TTTTTTATTGTTT
7481780 TAATTTTTAA-TTTTTA-TGTTT
1 TAATTTTTAATTTTTTATTGTTT
*
7481801 TTATTTTT
1 TAATTTTT
7481809 TCTTTTAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
21 12 0.43
22 6 0.21
24 10 0.36
ACGTcount: A:0.21, C:0.00, G:0.04, T:0.75
Consensus pattern (23 bp):
TAATTTTTAATTTTTTATTGTTT
Found at i:7483211 original size:17 final size:17
Alignment explanation
Indices: 7483170--7483211 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
7483160 GAATTTTACA
* *
7483170 TTTATTTAATATTATAT
1 TTTATTAAAAATTATAT
7483187 TATT-TTAAAAATTATAT
1 T-TTATTAAAAATTATAT
7483204 TTTATTAA
1 TTTATTAA
7483212 TTTCAAATCG
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
16 2 0.10
17 17 0.81
18 2 0.10
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
TTTATTAAAAATTATAT
Found at i:7488547 original size:13 final size:13
Alignment explanation
Indices: 7488529--7488553 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7488519 GTCATTTTCA
7488529 TAAACAAGAACAG
1 TAAACAAGAACAG
7488542 TAAACAAGAACA
1 TAAACAAGAACA
7488554 CCAAAGCATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.16, G:0.12, T:0.08
Consensus pattern (13 bp):
TAAACAAGAACAG
Found at i:7494428 original size:17 final size:17
Alignment explanation
Indices: 7494399--7494441 Score: 70
Period size: 16 Copynumber: 2.5 Consensus size: 17
7494389 AATCGAATCG
7494399 AATTTTATATATATTTTT
1 AATTTTATATATA-TTTT
7494417 AATTTT-TATATATTTT
1 AATTTTATATATATTTT
7494433 AATTTTATA
1 AATTTTATA
7494442 AAAAATAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
16 10 0.42
17 8 0.33
18 6 0.25
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (17 bp):
AATTTTATATATATTTT
Found at i:7494492 original size:13 final size:13
Alignment explanation
Indices: 7494475--7494514 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
7494465 AATTACTTAA
7494475 ATATATTAAAATT
1 ATATATTAAAATT
* *
7494488 TTATATTAAAATA
1 ATATATTAAAATT
*
7494501 ATATATAAAAATT
1 ATATATTAAAATT
7494514 A
1 A
7494515 ATAAATAAAA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.42
Consensus pattern (13 bp):
ATATATTAAAATT
Found at i:7494572 original size:18 final size:18
Alignment explanation
Indices: 7494546--7494582 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
7494536 TTGATTCAAA
7494546 TAAAATAAAATTTAAATT
1 TAAAATAAAATTTAAATT
* *
7494564 TAAATTAAATTTTAAATT
1 TAAAATAAAATTTAAATT
7494582 T
1 T
7494583 TTATAACATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (18 bp):
TAAAATAAAATTTAAATT
Found at i:7494791 original size:19 final size:19
Alignment explanation
Indices: 7494765--7494810 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
7494755 TTAAGGTTTG
*
7494765 TATTATTAAATGTAATTTT
1 TATTATTAAATGTAAATTT
* *
7494784 TTTTATTAAATTTAAATTT
1 TATTATTAAATGTAAATTT
7494803 TATTATTA
1 TATTATTA
7494811 TTATATTATA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (19 bp):
TATTATTAAATGTAAATTT
Found at i:7495772 original size:30 final size:30
Alignment explanation
Indices: 7495732--7495805 Score: 112
Period size: 30 Copynumber: 2.4 Consensus size: 30
7495722 TAATTAATAA
*
7495732 TTTTATAATTTAAATATTAAATTATAAATT
1 TTTTATAATTTAAATATTAAATTACAAATT
* *
7495762 TTTTAAAATTTAAATATTAAATTACATATT
1 TTTTATAATTTAAATATTAAATTACAAATT
7495792 TTGTTATAATTTAA
1 TT-TTATAATTTAA
7495806 TAATCATTTA
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
30 29 0.74
31 10 0.26
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.53
Consensus pattern (30 bp):
TTTTATAATTTAAATATTAAATTACAAATT
Found at i:7500298 original size:18 final size:18
Alignment explanation
Indices: 7500275--7500337 Score: 65
Period size: 18 Copynumber: 3.4 Consensus size: 18
7500265 GGATTATATA
7500275 AATTTAATATTTAAATTT
1 AATTTAATATTTAAATTT
*
7500293 AATTTAATATTAAAATATT
1 AATTTAATATTTAAAT-TT
**
7500312 -ATTTTTTAATTTAAATTT
1 AATTTAAT-ATTTAAATTT
*
7500330 GATTTAAT
1 AATTTAAT
7500338 TTATATATAT
Statistics
Matches: 36, Mismatches: 6, Indels: 5
0.77 0.13 0.11
Matches are distributed among these distances:
18 22 0.61
19 14 0.39
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.56
Consensus pattern (18 bp):
AATTTAATATTTAAATTT
Found at i:7500329 original size:37 final size:37
Alignment explanation
Indices: 7500283--7500430 Score: 104
Period size: 37 Copynumber: 3.8 Consensus size: 37
7500273 TAAATTTAAT
7500283 ATTTAAATTTAATTTAATATTAAAATATT-ATTTTTTA
1 ATTTAAA-TTAATTTAATATTAAAATATTAATTTTTTA
* * **
7500320 ATTTAAATTTGATTTAAT-TTATATATATTTAAATTTATAATCG
1 ATTTAAA-TTAATTTAATATTA-AAATA-TT-AATTT-T--TTA
* *
7500363 ATTTGAATTAATTTAAAATTAAAAATATTAAATTTTTTA
1 ATTTAAATTAATTTAATATT-AAAATATT-AATTTTTTA
* *
7500402 ATGTAAATTATTTTTAATA-TAAAATATTA
1 ATTTAAATTA-ATTTAATATTAAAATATTA
7500431 TTTAATATGA
Statistics
Matches: 87, Mismatches: 14, Indels: 20
0.72 0.12 0.17
Matches are distributed among these distances:
36 3 0.03
37 22 0.25
38 10 0.11
39 10 0.11
40 10 0.11
41 2 0.02
42 16 0.18
43 13 0.15
44 1 0.01
ACGTcount: A:0.45, C:0.01, G:0.03, T:0.52
Consensus pattern (37 bp):
ATTTAAATTAATTTAATATTAAAATATTAATTTTTTA
Found at i:7500417 original size:16 final size:16
Alignment explanation
Indices: 7500386--7500458 Score: 66
Period size: 16 Copynumber: 4.8 Consensus size: 16
7500376 TAAAATTAAA
*
7500386 AATATTAAAT-TTTTT
1 AATATAAAATATTTTT
* *
7500401 AATGTAAATTATTTTT
1 AATATAAAATATTTTT
7500417 AATATAAAATATTATTT
1 AATATAAAATATT-TTT
*
7500434 AATAT----GATTTTT
1 AATATAAAATATTTTT
7500446 AATATAAAATATT
1 AATATAAAATATT
7500459 ATTTTTCAAA
Statistics
Matches: 45, Mismatches: 7, Indels: 11
0.71 0.11 0.17
Matches are distributed among these distances:
12 8 0.18
13 3 0.07
15 7 0.16
16 19 0.42
17 8 0.18
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (16 bp):
AATATAAAATATTTTT
Found at i:7500477 original size:20 final size:19
Alignment explanation
Indices: 7500434--7500477 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
7500424 AATATTATTT
7500434 AATATGATTTTTAATATAA
1 AATATGATTTTTAATATAA
*
7500453 AATATTATTTTTCAA-ATAA
1 AATATGATTTTT-AATATAA
7500472 ATATAT
1 A-ATAT
7500478 AAATATAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 16 0.73
20 6 0.27
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (19 bp):
AATATGATTTTTAATATAA
Found at i:7501605 original size:23 final size:23
Alignment explanation
Indices: 7501553--7501606 Score: 65
Period size: 22 Copynumber: 2.3 Consensus size: 23
7501543 ATTCTAAATA
*
7501553 GATATGAAAAATAAAAATAAATTT
1 GATAT-AAAAACAAAAATAAATTT
* *
7501577 TA-ATAAAAACAAAAATATATTT
1 GATATAAAAACAAAAATAAATTT
7501599 GATATAAA
1 GATATAAA
7501607 TAAAAATTAT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
22 17 0.68
23 7 0.28
24 1 0.04
ACGTcount: A:0.63, C:0.02, G:0.06, T:0.30
Consensus pattern (23 bp):
GATATAAAAACAAAAATAAATTT
Found at i:7501612 original size:22 final size:21
Alignment explanation
Indices: 7501548--7501617 Score: 54
Period size: 22 Copynumber: 3.3 Consensus size: 21
7501538 TGATAATTCT
* *
7501548 AAATAGATATGAA-AAAT-AA
1 AAATATATTTGAATAAATAAA
* * *
7501567 AAATAAATTTTAATAAAAACAA
1 AAATATATTTGAATAAATA-AA
7501589 AAATATATTTGATATAAATAAA
1 AAATATATTTGA-ATAAATAAA
*
7501611 AATTATA
1 AAATATA
7501618 ATATAATCAT
Statistics
Matches: 39, Mismatches: 8, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
19 10 0.26
20 3 0.08
22 20 0.51
23 6 0.15
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.30
Consensus pattern (21 bp):
AAATATATTTGAATAAATAAA
Found at i:7501613 original size:21 final size:22
Alignment explanation
Indices: 7501559--7501613 Score: 67
Period size: 21 Copynumber: 2.5 Consensus size: 22
7501549 AATAGATATG
7501559 AAAAATAAAAATAAATTTTAAT
1 AAAAATAAAAATAAATTTTAAT
* * *
7501581 AAAAACAAAAATATA-TTTGAT
1 AAAAATAAAAATAAATTTTAAT
*
7501602 ATAAATAAAAAT
1 AAAAATAAAAAT
7501614 TATAATATAA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
21 15 0.54
22 13 0.46
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (22 bp):
AAAAATAAAAATAAATTTTAAT
Found at i:7512079 original size:21 final size:20
Alignment explanation
Indices: 7512041--7512081 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 20
7512031 TTTTACATCT
*
7512041 AAATTTATTTAAATATAATA
1 AAATTTATTTAAAAATAATA
7512061 AAATTTATATTAAAAATAATA
1 AAATTTAT-TTAAAAATAATA
7512082 TATAAAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (20 bp):
AAATTTATTTAAAAATAATA
Found at i:7512115 original size:10 final size:8
Alignment explanation
Indices: 7512087--7512120 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
7512077 TAATATATAA
7512087 AAAAATTT
1 AAAAATTT
7512095 AAAAATTT
1 AAAAATTT
*
7512103 AAAAATTG
1 AAAAATTT
*
7512111 ATAAATTT
1 AAAAATTT
7512119 AA
1 AA
7512121 TCAAATCAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (8 bp):
AAAAATTT
Found at i:7512165 original size:30 final size:29
Alignment explanation
Indices: 7512113--7512175 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 29
7512103 AAAAATTGAT
* * *
7512113 AAATTTAATCAAATCAATAAAATTTAATTC
1 AAATCTAATCAAATCAA-AAAAATAAATTC
* *
7512143 AAATCTAATCAATTTAAAAAAATAAATTC
1 AAATCTAATCAAATCAAAAAAATAAATTC
7512172 AAAT
1 AAAT
7512176 TCAAATTTAA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
29 14 0.50
30 14 0.50
ACGTcount: A:0.57, C:0.10, G:0.00, T:0.33
Consensus pattern (29 bp):
AAATCTAATCAAATCAAAAAAATAAATTC
Found at i:7518197 original size:13 final size:13
Alignment explanation
Indices: 7518179--7518204 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7518169 TTTCCAATGG
7518179 ATAGAAGCTAAAA
1 ATAGAAGCTAAAA
7518192 ATAGAAGCTAAAA
1 ATAGAAGCTAAAA
7518205 CTCACTGTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.15, T:0.15
Consensus pattern (13 bp):
ATAGAAGCTAAAA
Found at i:7519766 original size:25 final size:27
Alignment explanation
Indices: 7519738--7519795 Score: 66
Period size: 26 Copynumber: 2.2 Consensus size: 27
7519728 TATATTAAAT
*
7519738 AATTTTTTTGA-GATTTTTAAATTAA-
1 AATTTTTTTAATGATTTTTAAATTAAC
* * *
7519763 AATTTATTTAATTATTTTTAATTTAAC
1 AATTTTTTTAATGATTTTTAAATTAAC
7519790 AATTTT
1 AATTTT
7519796 AATTCAAAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
25 9 0.35
26 12 0.46
27 5 0.19
ACGTcount: A:0.36, C:0.02, G:0.03, T:0.59
Consensus pattern (27 bp):
AATTTTTTTAATGATTTTTAAATTAAC
Found at i:7519808 original size:13 final size:14
Alignment explanation
Indices: 7519778--7519810 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
7519768 ATTTAATTAT
*
7519778 TTTTAATTTAACAA
1 TTTTAATTCAACAA
7519792 TTTTAATTCAA-AA
1 TTTTAATTCAACAA
7519805 TTTTAA
1 TTTTAA
7519811 AAATATATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 8 0.44
14 10 0.56
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.52
Consensus pattern (14 bp):
TTTTAATTCAACAA
Found at i:7519989 original size:2 final size:2
Alignment explanation
Indices: 7519982--7520022 Score: 73
Period size: 2 Copynumber: 20.5 Consensus size: 2
7519972 ATATTTGTTT
*
7519982 TA TA TA TA TA TA TA TA TA TG TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7520023 GATTATGAGA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.51
Consensus pattern (2 bp):
TA
Found at i:7520705 original size:2 final size:2
Alignment explanation
Indices: 7520700--7520728 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
7520690 ATAATTAGTT
7520700 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7520729 GGATGGAGAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7531583 original size:12 final size:12
Alignment explanation
Indices: 7531553--7531585 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
7531543 GGCGACACAT
*
7531553 TTTTTGCTTTGG
1 TTTTTGTTTTGG
7531565 TTTTTGTTTTGG
1 TTTTTGTTTTGG
7531577 TTTTTGTTT
1 TTTTTGTTT
7531586 ATTTTATTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.00, C:0.03, G:0.21, T:0.76
Consensus pattern (12 bp):
TTTTTGTTTTGG
Found at i:7531996 original size:14 final size:16
Alignment explanation
Indices: 7531958--7532006 Score: 57
Period size: 14 Copynumber: 3.1 Consensus size: 16
7531948 AATTTAAATA
*
7531958 TAAATTTTTATTTTTAT
1 TAAATTTATA-TTTTAT
7531975 TAAATTTATATTTT-T
1 TAAATTTATATTTTAT
*
7531990 T-AATTTATATTATAT
1 TAAATTTATATTTTAT
7532005 TA
1 TA
7532007 TCATAATTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
14 11 0.39
15 4 0.14
16 4 0.14
17 9 0.32
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
TAAATTTATATTTTAT
Found at i:7541994 original size:22 final size:23
Alignment explanation
Indices: 7541969--7542025 Score: 66
Period size: 22 Copynumber: 2.5 Consensus size: 23
7541959 TTTTAATATA
7541969 TTTAATATTAAA-TTTA-AATTCT
1 TTTAATATTAAAGTTTATAATT-T
*
7541991 TTTAAAATTAAAGTTTTATAATTT
1 TTTAATATTAAAG-TTTATAATTT
7542015 TTT-ATATTAAA
1 TTTAATATTAAA
7542026 AAATCATAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
22 11 0.37
23 7 0.23
24 8 0.27
25 4 0.13
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (23 bp):
TTTAATATTAAAGTTTATAATTT
Found at i:7542197 original size:19 final size:19
Alignment explanation
Indices: 7542154--7542205 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
7542144 CAGAATTTAG
* *
7542154 GGTTTTATATTTCATAGTA
1 GGTTTTAAATTTCATAATA
**
7542173 TATTTTAAATTTCATAATA
1 GGTTTTAAATTTCATAATA
7542192 GGTTTTTAAATTTC
1 GG-TTTTAAATTTC
7542206 GTTTGAACGT
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
19 15 0.58
20 11 0.42
ACGTcount: A:0.31, C:0.06, G:0.10, T:0.54
Consensus pattern (19 bp):
GGTTTTAAATTTCATAATA
Found at i:7542401 original size:21 final size:20
Alignment explanation
Indices: 7542377--7542419 Score: 61
Period size: 19 Copynumber: 2.1 Consensus size: 20
7542367 TTTTTTAATG
*
7542377 TTTAAAATTCTTATTTTTATA
1 TTTAAAATT-ATATTTTTATA
7542398 TTTAAAATTATA-TTTTATA
1 TTTAAAATTATATTTTTATA
7542417 TTT
1 TTT
7542420 TTTTAATATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 10 0.48
20 2 0.10
21 9 0.43
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (20 bp):
TTTAAAATTATATTTTTATA
Found at i:7542481 original size:29 final size:29
Alignment explanation
Indices: 7542415--7542481 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 29
7542405 TTATATTTTA
7542415 TATTTTTTTAATATTAAAAATCATAAAAT
1 TATTTTTTTAATATTAAAAATCATAAAAT
* **
7542444 T-TTAATTTTAATATTAATTAT-ATTAAAAT
1 TATT-TTTTTAATATTAAAAATCA-TAAAAT
7542473 TATTTTTTT
1 TATTTTTTT
7542482 TTAAATTTAG
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
28 3 0.10
29 26 0.84
30 2 0.06
ACGTcount: A:0.42, C:0.01, G:0.00, T:0.57
Consensus pattern (29 bp):
TATTTTTTTAATATTAAAAATCATAAAAT
Found at i:7545879 original size:18 final size:18
Alignment explanation
Indices: 7545856--7545915 Score: 54
Period size: 18 Copynumber: 3.3 Consensus size: 18
7545846 AAAGGTTAAA
7545856 AAAAAAAGAAAAATGAAT
1 AAAAAAAGAAAAATGAAT
*
7545874 AAAAAAA-ATTTTAAA--AAT
1 AAAAAAAGA---AAAATGAAT
*
7545892 AAAAAAAGGAAAATGAAT
1 AAAAAAAGAAAAATGAAT
7545910 AAAAAA
1 AAAAAA
7545916 TAATTTATTG
Statistics
Matches: 33, Mismatches: 3, Indels: 12
0.69 0.06 0.25
Matches are distributed among these distances:
16 3 0.09
17 1 0.03
18 26 0.79
20 3 0.09
ACGTcount: A:0.77, C:0.00, G:0.08, T:0.15
Consensus pattern (18 bp):
AAAAAAAGAAAAATGAAT
Found at i:7546281 original size:30 final size:29
Alignment explanation
Indices: 7546190--7546285 Score: 104
Period size: 30 Copynumber: 3.2 Consensus size: 29
7546180 TATAAACAAA
*
7546190 AATT-AATTTTTAAATATTTATTTTTATT
1 AATTGAATATTTAAATATTTATTTTTATT
* * * * *
7546218 CAATTAAATCTTTAAATATATATTCTCATTT
1 -AATTGAATATTTAAATATTTATTTTTA-TT
7546249 AATTGAATATTTAAATATTTATTTTTACTT
1 AATTGAATATTTAAATATTTATTTTTA-TT
7546279 AATTGAA
1 AATTGAA
7546286 CTCTCAATTA
Statistics
Matches: 55, Mismatches: 10, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
29 4 0.07
30 49 0.89
31 2 0.04
ACGTcount: A:0.39, C:0.05, G:0.02, T:0.54
Consensus pattern (29 bp):
AATTGAATATTTAAATATTTATTTTTATT
Found at i:7550185 original size:24 final size:25
Alignment explanation
Indices: 7550144--7550197 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 25
7550134 TATATTTTAA
* *
7550144 AATTTTAAAATTATAATATAATTAT
1 AATTTTAAAATTAGAATAAAATTAT
* *
7550169 AATTTTGAAA-TAGAATAAAATTTT
1 AATTTTAAAATTAGAATAAAATTAT
7550193 AATTT
1 AATTT
7550198 ATCTTGTATA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
24 16 0.64
25 9 0.36
ACGTcount: A:0.50, C:0.00, G:0.04, T:0.46
Consensus pattern (25 bp):
AATTTTAAAATTAGAATAAAATTAT
Found at i:7550468 original size:24 final size:25
Alignment explanation
Indices: 7550413--7550468 Score: 78
Period size: 27 Copynumber: 2.2 Consensus size: 25
7550403 TTCAATTGGT
7550413 AATTGGAGAAGGAATGCTCCAATGGCC
1 AATTGGAGAAGGAATGCTCC-A-GGCC
*
7550440 AATTGGAGAGGGAATGCTCC-GGCC
1 AATTGGAGAAGGAATGCTCCAGGCC
7550464 AATTG
1 AATTG
7550469 AGGGTGTTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
24 9 0.32
27 19 0.68
ACGTcount: A:0.30, C:0.18, G:0.32, T:0.20
Consensus pattern (25 bp):
AATTGGAGAAGGAATGCTCCAGGCC
Found at i:7550626 original size:33 final size:35
Alignment explanation
Indices: 7550570--7550641 Score: 87
Period size: 33 Copynumber: 2.1 Consensus size: 35
7550560 ATGAATTTTT
*
7550570 TAAATTTAATATAAAAATGAAATTTATTA-TATAA
1 TAAATTTAATATAAAAATAAAATTTATTATTATAA
* *
7550604 TAAA-TTAATA-AAATAATAAAATTTTTTATTATAT
1 TAAATTTAATATAAA-AATAAAATTTATTATTATAA
7550638 TAAA
1 TAAA
7550642 AATATTATTA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
32 3 0.09
33 18 0.55
34 12 0.36
ACGTcount: A:0.56, C:0.00, G:0.01, T:0.43
Consensus pattern (35 bp):
TAAATTTAATATAAAAATAAAATTTATTATTATAA
Found at i:7551021 original size:38 final size:39
Alignment explanation
Indices: 7550970--7551043 Score: 132
Period size: 38 Copynumber: 1.9 Consensus size: 39
7550960 CCGTATGGGT
*
7550970 CCCTCACTCTATATAAATATAGAGTATAT-TATATAAGC
1 CCCTCACTCTATATAAATAGAGAGTATATATATATAAGC
7551008 CCCTCACTCTATATAAATAGAGAGTATATATATATA
1 CCCTCACTCTATATAAATAGAGAGTATATATATATA
7551044 TATATTTTTT
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
38 28 0.82
39 6 0.18
ACGTcount: A:0.41, C:0.18, G:0.08, T:0.34
Consensus pattern (39 bp):
CCCTCACTCTATATAAATAGAGAGTATATATATATAAGC
Found at i:7555598 original size:18 final size:18
Alignment explanation
Indices: 7555575--7555609 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
7555565 TGTGATATTG
*
7555575 AATATATCAGGTCAATTT
1 AATATATCAGATCAATTT
7555593 AATATATCAGATCAATT
1 AATATATCAGATCAATT
7555610 CAAATATTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.43, C:0.11, G:0.09, T:0.37
Consensus pattern (18 bp):
AATATATCAGATCAATTT
Found at i:7559935 original size:2 final size:2
Alignment explanation
Indices: 7559928--7559957 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
7559918 TCATCTTTGC
7559928 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7559958 TCCAGGCAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7565548 original size:1 final size:1
Alignment explanation
Indices: 7565542--7565571 Score: 60
Period size: 1 Copynumber: 30.0 Consensus size: 1
7565532 CTAGCTTTTG
7565542 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
7565572 CAGGGCAAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 29 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:7565982 original size:2 final size:2
Alignment explanation
Indices: 7565970--7566012 Score: 50
Period size: 2 Copynumber: 21.5 Consensus size: 2
7565960 TGAGTCATTG
* * * *
7565970 TA TA AA TA TA TA TA CA TG TA TA CA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7566012 T
1 T
7566013 TTTTTTGAGG
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.44
Consensus pattern (2 bp):
TA
Found at i:7571398 original size:20 final size:21
Alignment explanation
Indices: 7571362--7571401 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
7571352 ATTTATCAAT
*
7571362 TTTAATATATAAATATAATAA
1 TTTAAAATATAAATATAATAA
7571383 TTTAAAATAT-AATATAATA
1 TTTAAAATATAAATATAATA
7571402 TAATATAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.42
Consensus pattern (21 bp):
TTTAAAATATAAATATAATAA
Found at i:7571401 original size:10 final size:11
Alignment explanation
Indices: 7571368--7571414 Score: 51
Period size: 10 Copynumber: 4.0 Consensus size: 11
7571358 CAATTTTAAT
7571368 ATATAAATATA
1 ATATAAATATA
7571379 ATAATTTAAAATATA
1 AT-A--T-AAATATA
7571394 ATAT-AATATA
1 ATATAAATATA
7571404 ATATAAATATA
1 ATATAAATATA
7571415 CAAATTATCA
Statistics
Matches: 31, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
10 10 0.32
11 8 0.26
12 2 0.06
14 2 0.06
15 9 0.29
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (11 bp):
ATATAAATATA
Found at i:7572304 original size:2 final size:2
Alignment explanation
Indices: 7572297--7572326 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
7572287 CCACATGCAA
*
7572297 AT AT AT AT AT GT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7572327 GACTTATTTC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7572457 original size:11 final size:11
Alignment explanation
Indices: 7572441--7572472 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
7572431 CAACTGCTCT
7572441 CCTTTCTTCAA
1 CCTTTCTTCAA
7572452 CCTTTCTTCAA
1 CCTTTCTTCAA
7572463 CCTTTCTTCA
1 CCTTTCTTCA
7572473 TTTTCTAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.16, C:0.38, G:0.00, T:0.47
Consensus pattern (11 bp):
CCTTTCTTCAA
Found at i:7588525 original size:75 final size:75
Alignment explanation
Indices: 7588440--7588587 Score: 253
Period size: 75 Copynumber: 2.0 Consensus size: 75
7588430 AAAATATTCA
*
7588440 TTAATTGTAAAAAATTATAAACAAACATCAAATTAAACA-TCCACAATTAATAATCATAAATCAT
1 TTAATTGTAAAAAATTATAAACAAACATCAAATCAAACACT-CACAATTAATAATCATAAATCAT
7588504 CTGAATCTCCT
65 CTGAATCTCCT
* *
7588515 TTAATTGTAAAAAATTATAAACATACATCAAATCAAACACTCACAATTAATAATCATAAATCGTC
1 TTAATTGTAAAAAATTATAAACAAACATCAAATCAAACACTCACAATTAATAATCATAAATCATC
7588580 TGAATCTC
66 TGAATCTC
7588588 TAGTTCTATA
Statistics
Matches: 69, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
75 68 0.99
76 1 0.01
ACGTcount: A:0.49, C:0.18, G:0.03, T:0.30
Consensus pattern (75 bp):
TTAATTGTAAAAAATTATAAACAAACATCAAATCAAACACTCACAATTAATAATCATAAATCATC
TGAATCTCCT
Found at i:7588902 original size:12 final size:12
Alignment explanation
Indices: 7588880--7588908 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
7588870 ATATTTTTTC
7588880 TTTTA-AAATTT
1 TTTTATAAATTT
7588891 TTTTATAAATTT
1 TTTTATAAATTT
7588903 TTTTAT
1 TTTTAT
7588909 CCATTAAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 5 0.29
12 12 0.71
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (12 bp):
TTTTATAAATTT
Found at i:7592222 original size:14 final size:15
Alignment explanation
Indices: 7592203--7592231 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
7592193 ATTAAATTAT
7592203 TTTTTAATTT-TTAA
1 TTTTTAATTTCTTAA
7592217 TTTTTAATTTCTTAA
1 TTTTTAATTTCTTAA
7592232 ATTTATTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (15 bp):
TTTTTAATTTCTTAA
Found at i:7594520 original size:48 final size:48
Alignment explanation
Indices: 7594449--7594544 Score: 183
Period size: 48 Copynumber: 2.0 Consensus size: 48
7594439 CTTCCAGATT
7594449 ATGTGTAATTATCTCTTTAATTATTTTCATTCCAATTTATTATCTTTA
1 ATGTGTAATTATCTCTTTAATTATTTTCATTCCAATTTATTATCTTTA
*
7594497 ATGTGTAATTATTTCTTTAATTATTTTCATTCCAATTTATTATCTTTA
1 ATGTGTAATTATCTCTTTAATTATTTTCATTCCAATTTATTATCTTTA
7594545 GGGTTTCTTG
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.27, C:0.11, G:0.04, T:0.57
Consensus pattern (48 bp):
ATGTGTAATTATCTCTTTAATTATTTTCATTCCAATTTATTATCTTTA
Found at i:7607863 original size:14 final size:14
Alignment explanation
Indices: 7607844--7607876 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
7607834 AATATCTTTA
7607844 CTAAAAATATATAT
1 CTAAAAATATATAT
7607858 CTAAAAATATATAT
1 CTAAAAATATATAT
7607872 -TAAAA
1 CTAAAA
7607877 TTTATTAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 5 0.26
14 14 0.74
ACGTcount: A:0.61, C:0.06, G:0.00, T:0.33
Consensus pattern (14 bp):
CTAAAAATATATAT
Found at i:7607876 original size:12 final size:12
Alignment explanation
Indices: 7607847--7607887 Score: 50
Period size: 14 Copynumber: 3.4 Consensus size: 12
7607837 ATCTTTACTA
7607847 AAAATATATATCT
1 AAAATATATAT-T
7607860 AAAAATATATATT
1 -AAAATATATATT
7607873 AAAAT-T-TATT
1 AAAATATATATT
7607883 AAAAT
1 AAAAT
7607888 TTTTTCAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
10 9 0.33
11 1 0.04
12 5 0.19
13 1 0.04
14 11 0.41
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (12 bp):
AAAATATATATT
Found at i:7610079 original size:29 final size:29
Alignment explanation
Indices: 7610034--7610097 Score: 69
Period size: 29 Copynumber: 2.2 Consensus size: 29
7610024 AATCATTATA
*
7610034 TTTTATATTTTATTTATTTATTTAT-TAGT
1 TTTTATATTTTATTTATTCATTTATGTA-T
* *
7610063 TTTTATCTTTTGA-TTATTCGTTTATGTAT
1 TTTTATATTTT-ATTTATTCATTTATGTAT
7610092 TTTTAT
1 TTTTAT
7610098 TTCTCTTTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 27 0.90
30 3 0.10
ACGTcount: A:0.20, C:0.03, G:0.06, T:0.70
Consensus pattern (29 bp):
TTTTATATTTTATTTATTCATTTATGTAT
Found at i:7610857 original size:17 final size:16
Alignment explanation
Indices: 7610835--7610866 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
7610825 AACCGATCTC
7610835 AAAATCGACTATAACTG
1 AAAATCGACTA-AACTG
7610852 AAAATCGACTAAACT
1 AAAATCGACTAAACT
7610867 AAACCGAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.50, C:0.19, G:0.09, T:0.22
Consensus pattern (16 bp):
AAAATCGACTAAACTG
Found at i:7611686 original size:21 final size:21
Alignment explanation
Indices: 7611645--7611692 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 21
7611635 CTAAGTCGTT
*
7611645 TTTATTTTTTTGGTATTTTTTA
1 TTTATTTTTTTAGTA-TTTTTA
7611667 TTTATTTTATTTAGTA-TTTTA
1 TTTATTTT-TTTAGTATTTTTA
7611688 TTTAT
1 TTTAT
7611693 GTGTTTATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
21 10 0.42
22 8 0.33
23 6 0.25
ACGTcount: A:0.19, C:0.00, G:0.06, T:0.75
Consensus pattern (21 bp):
TTTATTTTTTTAGTATTTTTA
Found at i:7615832 original size:21 final size:21
Alignment explanation
Indices: 7615808--7615890 Score: 58
Period size: 21 Copynumber: 4.0 Consensus size: 21
7615798 TTTTGATAAG
7615808 ATTAAAAATAATAATAAAAAA
1 ATTAAAAATAATAATAAAAAA
** * * ** *
7615829 ATTAATTATTATAATGATGAG
1 ATTAAAAATAATAATAAAAAA
* * *
7615850 ATTAAATATTATAATAATAAA
1 ATTAAAAATAATAATAAAAAA
* *
7615871 ATTAAAATTAATAATTAAAA
1 ATTAAAAATAATAATAAAAA
7615891 TATATGTTTG
Statistics
Matches: 46, Mismatches: 16, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
21 46 1.00
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (21 bp):
ATTAAAAATAATAATAAAAAA
Found at i:7615885 original size:42 final size:42
Alignment explanation
Indices: 7615801--7615885 Score: 109
Period size: 42 Copynumber: 2.0 Consensus size: 42
7615791 AGATTAATTT
*
7615801 TGATAAGATTAAAAATAATAATAAAAAAATTAATTATTATAA
1 TGATAAGATTAAAAATAATAATAAAAAAATTAATAATTATAA
* * * *
7615843 TGATGAGATTAAATATTATAATAATAAAATTAA-AATTAATAA
1 TGATAAGATTAAAAATAATAATAAAAAAATTAATAATT-ATAA
7615885 T
1 T
7615886 TAAAATATAT
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
41 3 0.08
42 34 0.92
ACGTcount: A:0.59, C:0.00, G:0.06, T:0.35
Consensus pattern (42 bp):
TGATAAGATTAAAAATAATAATAAAAAAATTAATAATTATAA
Found at i:7616570 original size:2 final size:2
Alignment explanation
Indices: 7616563--7616595 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
7616553 GCTTTTTCTT
7616563 TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA -A TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7616596 TCATCATTGA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
1 2 0.07
2 27 0.93
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7616838 original size:11 final size:11
Alignment explanation
Indices: 7616798--7616838 Score: 57
Period size: 11 Copynumber: 3.8 Consensus size: 11
7616788 TATTTCTTTT
*
7616798 TTTTTTTACAA
1 TTTTTTTATAA
7616809 -TTTTTTATAA
1 TTTTTTTATAA
*
7616819 ATTTTTTATAA
1 TTTTTTTATAA
7616830 TTTTTTTAT
1 TTTTTTTAT
7616839 GAGATTCACT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
10 9 0.33
11 18 0.67
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (11 bp):
TTTTTTTATAA
Found at i:7619907 original size:3 final size:3
Alignment explanation
Indices: 7619899--7619937 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
7619889 AACTAAAAGG
7619899 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
7619938 AAACAAGCGA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:7625006 original size:13 final size:12
Alignment explanation
Indices: 7624976--7625021 Score: 58
Period size: 12 Copynumber: 3.8 Consensus size: 12
7624966 GTTCAATTTT
* *
7624976 TTAATAAATTCA
1 TTAAAAAATACA
7624988 TTAAAAAATACA
1 TTAAAAAATACA
7625000 CTTAAAAAAT-CA
1 -TTAAAAAATACA
7625012 TTAAAAAATA
1 TTAAAAAATA
7625022 TGTTTTGTGT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
11 9 0.30
12 12 0.40
13 9 0.30
ACGTcount: A:0.61, C:0.09, G:0.00, T:0.30
Consensus pattern (12 bp):
TTAAAAAATACA
Found at i:7625015 original size:11 final size:11
Alignment explanation
Indices: 7624985--7625020 Score: 54
Period size: 11 Copynumber: 3.1 Consensus size: 11
7624975 TTTAATAAAT
7624985 TCATTAAAAAA
1 TCATTAAAAAA
7624996 TACACTTAAAAAA
1 T-CA-TTAAAAAA
7625009 TCATTAAAAAA
1 TCATTAAAAAA
7625020 T
1 T
7625021 ATGTTTTGTG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
11 10 0.43
12 4 0.17
13 9 0.39
ACGTcount: A:0.61, C:0.11, G:0.00, T:0.28
Consensus pattern (11 bp):
TCATTAAAAAA
Found at i:7639000 original size:2 final size:2
Alignment explanation
Indices: 7638993--7639036 Score: 70
Period size: 2 Copynumber: 22.0 Consensus size: 2
7638983 ATTAGAGAAG
* *
7638993 AT AT AT AT AT AT AT AT AT AT TT GT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7639035 AT
1 AT
7639037 TATTACAACA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (2 bp):
AT
Found at i:7639342 original size:21 final size:23
Alignment explanation
Indices: 7639318--7639367 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 23
7639308 ATATTATATT
*
7639318 TTTAAATA-A-ATTTTTTAATAA
1 TTTAAATATATATTTTTTAAAAA
7639339 TTTAAATATATATTTTTTAAAAA
1 TTTAAATATATATTTTTTAAAAA
7639362 TTTAAA
1 TTTAAA
7639368 AATTTCTAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
21 8 0.31
22 1 0.04
23 17 0.65
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (23 bp):
TTTAAATATATATTTTTTAAAAA
Found at i:7639934 original size:17 final size:18
Alignment explanation
Indices: 7639914--7639951 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
7639904 TTATTGAATT
* *
7639914 AATAATTTA-ATTTTAAA
1 AATAATTGACATTTAAAA
7639931 AATAATTGACATTTAAAA
1 AATAATTGACATTTAAAA
7639949 AAT
1 AAT
7639952 TATGTTTATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 8 0.44
18 10 0.56
ACGTcount: A:0.55, C:0.03, G:0.03, T:0.39
Consensus pattern (18 bp):
AATAATTGACATTTAAAA
Found at i:7641205 original size:31 final size:32
Alignment explanation
Indices: 7641134--7641205 Score: 85
Period size: 33 Copynumber: 2.2 Consensus size: 32
7641124 TGCGAAGGTA
*
7641134 GGTTTTTAGAGAGAGAAATTGAAATAGAAACT
1 GGTTTTTAGAGAGAGAAATTGAAAAAGAAACT
* *
7641166 GAGGTTTTAGAGAGAGAAA-T-AAAAAGAAATTT
1 G-GTTTTTAGAGAGAGAAATTGAAAAAGAAA-CT
7641198 GGTTTTTA
1 GGTTTTTA
7641206 TTTTTATTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
31 14 0.41
32 4 0.12
33 16 0.47
ACGTcount: A:0.43, C:0.01, G:0.25, T:0.31
Consensus pattern (32 bp):
GGTTTTTAGAGAGAGAAATTGAAAAAGAAACT
Found at i:7647564 original size:64 final size:65
Alignment explanation
Indices: 7647441--7647584 Score: 152
Period size: 64 Copynumber: 2.2 Consensus size: 65
7647431 CTTATAAAAA
* * * * * * * * *
7647441 ATTGAATATGATTATTGAATGCGTTTTTGGCTAAAAATATCTTCAATAATTCTTTATAAAATTTT
1 ATTGAGTAGGATTATTGAAGGCATTTTTGGCTAAAAATATCTTCAATAATCCCTCATAAAAATGT
*
7647506 ATTGAGTA-GATTATTGAAGGTATTTTTGG-TAAAAA-ATGACTTCAATAATCCCTCATAAAAAT
1 ATTGAGTAGGATTATTGAAGGCATTTTTGGCTAAAAATAT--CTTCAATAATCCCTCATAAAAAT
7647568 GT
64 GT
7647570 ATTGAG-AGGATTATT
1 ATTGAGTAGGATTATT
7647585 AAATATGTTT
Statistics
Matches: 67, Mismatches: 9, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
62 2 0.03
63 7 0.10
64 51 0.76
65 7 0.10
ACGTcount: A:0.37, C:0.08, G:0.15, T:0.41
Consensus pattern (65 bp):
ATTGAGTAGGATTATTGAAGGCATTTTTGGCTAAAAATATCTTCAATAATCCCTCATAAAAATGT
Found at i:7651832 original size:22 final size:22
Alignment explanation
Indices: 7651807--7651862 Score: 53
Period size: 22 Copynumber: 2.5 Consensus size: 22
7651797 TAATTTTTTT
*
7651807 AATTTTTATATATTATTT-TATA
1 AATTTTTATATA-TATTTAAATA
*
7651829 AATTAATTA-ATATATTTAAATA
1 AATT-TTTATATATATTTAAATA
*
7651851 AATTTATATATA
1 AATTTTTATATA
7651863 AAATAATTAT
Statistics
Matches: 27, Mismatches: 4, Indels: 6
0.73 0.11 0.16
Matches are distributed among these distances:
21 7 0.26
22 17 0.63
23 3 0.11
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (22 bp):
AATTTTTATATATATTTAAATA
Found at i:7651854 original size:18 final size:18
Alignment explanation
Indices: 7651827--7651861 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7651817 TATTATTTTA
*
7651827 TAAATTAATTAATATATT
1 TAAATAAATTAATATATT
*
7651845 TAAATAAATTTATATAT
1 TAAATAAATTAATATAT
7651862 AAAATAATTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
TAAATAAATTAATATATT
Found at i:7666202 original size:119 final size:119
Alignment explanation
Indices: 7665991--7666226 Score: 445
Period size: 119 Copynumber: 2.0 Consensus size: 119
7665981 CTATTAATAC
7665991 TAAGAGATTACTCAATCCATGGGAAAGAAATGAAAATCATACTCTATGTCTCAACTCTGCCAAGG
1 TAAGAGATTACTCAATCCATGGGAAAGAAATGAAAATCATACTCTATGTCTCAACTCTGCCAAGG
**
7666056 CTATTGTTTGCACTGTAGTCAACATAGGGACACAAGATTTCATTGAAGGAAGAG
66 CTATTGGCTGCACTGTAGTCAACATAGGGACACAAGATTTCATTGAAGGAAGAG
7666110 TAAGAGATTACTCAATCCATGGGAAAGAAATGAAAATCATACTCTATGTCTCAACTCTGCCAAGG
1 TAAGAGATTACTCAATCCATGGGAAAGAAATGAAAATCATACTCTATGTCTCAACTCTGCCAAGG
*
7666175 CTATTGGCTGCGCTGTAGTCAACATAGGGACACAAGATTTCATTGAAGGAAG
66 CTATTGGCTGCACTGTAGTCAACATAGGGACACAAGATTTCATTGAAGGAAG
7666227 GGTATGCTTA
Statistics
Matches: 114, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
119 114 1.00
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.25
Consensus pattern (119 bp):
TAAGAGATTACTCAATCCATGGGAAAGAAATGAAAATCATACTCTATGTCTCAACTCTGCCAAGG
CTATTGGCTGCACTGTAGTCAACATAGGGACACAAGATTTCATTGAAGGAAGAG
Found at i:7668790 original size:29 final size:29
Alignment explanation
Indices: 7668748--7668809 Score: 124
Period size: 29 Copynumber: 2.1 Consensus size: 29
7668738 CAGAAATGGG
7668748 TAAATAATATTCGTATGATCACAAGAGCA
1 TAAATAATATTCGTATGATCACAAGAGCA
7668777 TAAATAATATTCGTATGATCACAAGAGCA
1 TAAATAATATTCGTATGATCACAAGAGCA
7668806 TAAA
1 TAAA
7668810 ACATACTAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.47, C:0.13, G:0.13, T:0.27
Consensus pattern (29 bp):
TAAATAATATTCGTATGATCACAAGAGCA
Found at i:7668893 original size:24 final size:24
Alignment explanation
Indices: 7668866--7668914 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
7668856 GTAAGGCTCA
7668866 GGGTGGTTGATGCTTGTCTAGTTG
1 GGGTGGTTGATGCTTGTCTAGTTG
7668890 GGGTGGTTGATGCTTGTCTAGTTG
1 GGGTGGTTGATGCTTGTCTAGTTG
7668914 G
1 G
7668915 TTTTTGTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.08, C:0.08, G:0.43, T:0.41
Consensus pattern (24 bp):
GGGTGGTTGATGCTTGTCTAGTTG
Found at i:7674209 original size:8 final size:8
Alignment explanation
Indices: 7674196--7674222 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
7674186 TATATACTGT
7674196 ATACATAC
1 ATACATAC
7674204 ATACATAC
1 ATACATAC
7674212 ATACATAC
1 ATACATAC
7674220 ATA
1 ATA
7674223 TAATATGTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.52, C:0.22, G:0.00, T:0.26
Consensus pattern (8 bp):
ATACATAC
Found at i:7674213 original size:12 final size:12
Alignment explanation
Indices: 7674196--7674222 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
7674186 TATATACTGT
7674196 ATACATACATAC
1 ATACATACATAC
7674208 ATACATACATAC
1 ATACATACATAC
7674220 ATA
1 ATA
7674223 TAATATGTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.22, G:0.00, T:0.26
Consensus pattern (12 bp):
ATACATACATAC
Found at i:7677206 original size:3 final size:3
Alignment explanation
Indices: 7677200--7677234 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
7677190 ATATGCTCCT
7677200 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
7677235 TCCGGTTTCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:7679876 original size:3 final size:3
Alignment explanation
Indices: 7679868--7679899 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
7679858 ACTGCTATGT
7679868 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
7679900 AAGCCTATTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:7682380 original size:14 final size:14
Alignment explanation
Indices: 7682347--7682382 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
7682337 ATTTTAATAA
* *
7682347 ATTTTGATATATAT
1 ATTTTTATATAGAT
7682361 ATTTTTATATAGAT
1 ATTTTTATATAGAT
7682375 ATTTTTAT
1 ATTTTTAT
7682383 TAAAAATGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.61
Consensus pattern (14 bp):
ATTTTTATATAGAT
Found at i:7682949 original size:32 final size:32
Alignment explanation
Indices: 7682889--7682953 Score: 96
Period size: 32 Copynumber: 2.0 Consensus size: 32
7682879 TTATAATTCC
7682889 ATATTTATATTAAAATTTTAAATATTAAAAAT
1 ATATTTATATTAAAATTTTAAATATTAAAAAT
* *
7682921 ATATTTGATATTAATATTTT-AATTTTAAAAAT
1 ATATTT-ATATTAAAATTTTAAATATTAAAAAT
7682953 A
1 A
7682954 ACAAGCGTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 18 0.60
33 12 0.40
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (32 bp):
ATATTTATATTAAAATTTTAAATATTAAAAAT
Found at i:7687244 original size:17 final size:17
Alignment explanation
Indices: 7687222--7687254 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
7687212 GGTTTAAGGA
*
7687222 AAAATTGGGAAGAAGAG
1 AAAATTCGGAAGAAGAG
7687239 AAAATTCGGAAGAAGA
1 AAAATTCGGAAGAAGA
7687255 AGAAGAGAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.55, C:0.03, G:0.30, T:0.12
Consensus pattern (17 bp):
AAAATTCGGAAGAAGAG
Found at i:7689267 original size:2 final size:2
Alignment explanation
Indices: 7689262--7689298 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
7689252 CTTGAAATGC
* *
7689262 AT AT AT AT AT AT AT GT AT AT AT AT AT AT AT GT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7689299 GGGGTGAAGT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7689283 original size:16 final size:16
Alignment explanation
Indices: 7689262--7689298 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
7689252 CTTGAAATGC
7689262 ATATATATATATATGT
1 ATATATATATATATGT
7689278 ATATATATATATATGT
1 ATATATATATATATGT
7689294 ATATA
1 ATATA
7689299 GGGGTGAAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (16 bp):
ATATATATATATATGT
Found at i:7690151 original size:19 final size:19
Alignment explanation
Indices: 7690126--7690168 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 19
7690116 ACTTTATATA
7690126 TATTTAA-AAAATAAATTT
1 TATTTAATAAAATAAATTT
*
7690144 TCATTTAATAATATAAATTT
1 T-ATTTAATAAAATAAATTT
7690164 TATTT
1 TATTT
7690169 TAGATTTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 1 0.05
19 10 0.45
20 11 0.50
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (19 bp):
TATTTAATAAAATAAATTT
Found at i:7690254 original size:5 final size:6
Alignment explanation
Indices: 7690217--7690252 Score: 54
Period size: 6 Copynumber: 5.7 Consensus size: 6
7690207 TATATTTAAA
7690217 AAAAATT AAAAAT ACAAAAT AAAAAT AAAAAT AAAA
1 AAAAA-T AAAAAT A-AAAAT AAAAAT AAAAAT AAAA
7690253 TATTTATTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
6 17 0.61
7 11 0.39
ACGTcount: A:0.81, C:0.03, G:0.00, T:0.17
Consensus pattern (6 bp):
AAAAAT
Found at i:7691118 original size:38 final size:38
Alignment explanation
Indices: 7691063--7691143 Score: 144
Period size: 38 Copynumber: 2.1 Consensus size: 38
7691053 AATCAGTAAA
* *
7691063 AAAAATTGAAGATTGCCTTTCGGATCAAGCAATGTGTT
1 AAAAATTGAAGAATGCCTTTCGGATCAAGCAAGGTGTT
7691101 AAAAATTGAAGAATGCCTTTCGGATCAAGCAAGGTGTT
1 AAAAATTGAAGAATGCCTTTCGGATCAAGCAAGGTGTT
7691139 AAAAA
1 AAAAA
7691144 GGTAGATTGT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.40, C:0.12, G:0.21, T:0.27
Consensus pattern (38 bp):
AAAAATTGAAGAATGCCTTTCGGATCAAGCAAGGTGTT
Found at i:7705832 original size:28 final size:28
Alignment explanation
Indices: 7705772--7705825 Score: 99
Period size: 28 Copynumber: 1.9 Consensus size: 28
7705762 ATCTCTATAA
*
7705772 CAATTTGTCACCCATGTTTAATTGATAG
1 CAATTTGTCACCAATGTTTAATTGATAG
7705800 CAATTTGTCACCAATGTTTAATTGAT
1 CAATTTGTCACCAATGTTTAATTGAT
7705826 GGTAATTCTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.41
Consensus pattern (28 bp):
CAATTTGTCACCAATGTTTAATTGATAG
Found at i:7707110 original size:28 final size:28
Alignment explanation
Indices: 7707070--7707127 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
7707060 GAGATGCAGT
7707070 TATACTAAGATCAAATTTAATGGTTACC
1 TATACTAAGATCAAATTTAATGGTTACC
7707098 TATACTAAGATCAAATTTAATGGTTACC
1 TATACTAAGATCAAATTTAATGGTTACC
7707126 TA
1 TA
7707128 ACCTGCTATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.40, C:0.14, G:0.10, T:0.36
Consensus pattern (28 bp):
TATACTAAGATCAAATTTAATGGTTACC
Found at i:7707669 original size:3 final size:3
Alignment explanation
Indices: 7707663--7707694 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
7707653 AAAAAAAAAA
*
7707663 AAG AAG AAG AAG GAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
7707695 ACTTTTCTGT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:7714343 original size:67 final size:67
Alignment explanation
Indices: 7714262--7714397 Score: 236
Period size: 67 Copynumber: 2.0 Consensus size: 67
7714252 TCATTCTTCC
* *
7714262 ATAAGATTTCTTCTTGGTTGAATATATGTATAGGATTCCTTGTCTAAGTAGAAGTCTTCAATTAC
1 ATAAGATTTCTTCTTGGCTGAATATATGTATAGGAGTCCTTGTCTAAGTAGAAGTCTTCAATTAC
7714327 CA
66 CA
* *
7714329 ATAAGATTTTTTCTTGGCTGAATATATGTATAGGAGTCCTTGTTTAAGTAGAAGTCTTCAATTAC
1 ATAAGATTTCTTCTTGGCTGAATATATGTATAGGAGTCCTTGTCTAAGTAGAAGTCTTCAATTAC
7714394 CA
66 CA
7714396 AT
1 AT
7714398 TGCTTGTACG
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
67 65 1.00
ACGTcount: A:0.30, C:0.12, G:0.17, T:0.40
Consensus pattern (67 bp):
ATAAGATTTCTTCTTGGCTGAATATATGTATAGGAGTCCTTGTCTAAGTAGAAGTCTTCAATTAC
CA
Found at i:7716628 original size:103 final size:104
Alignment explanation
Indices: 7716448--7716650 Score: 372
Period size: 103 Copynumber: 2.0 Consensus size: 104
7716438 TTGGCCATCG
* *
7716448 GAAGTTAAAGCAAAAAGTGTGTTTGGATTCAAAACAATATGTTTTTGAGGAAATAAAAAACAAAT
1 GAAGTTAAAGCAAAAAGTGTGTTAGGATTCAAAACAATATGTTTATGAGGAAATAAAAAACAAAT
*
7716513 AGCAAAGTAGCAAAAGTAACAACGAGGAGTCTTCTGTAC
66 AGCAAAGTAGCAAAAGTAACAACCAGGAGTCTTCTGTAC
7716552 GAAGTTAAAGCAAAAAGTGTGTTAGGATTCAAAA-AATATGTTTATGAGGAAATAAAAAACAAAT
1 GAAGTTAAAGCAAAAAGTGTGTTAGGATTCAAAACAATATGTTTATGAGGAAATAAAAAACAAAT
7716616 AGCAAAGTAGCAAAAGTAACAACCAGGAGTCTTCT
66 AGCAAAGTAGCAAAAGTAACAACCAGGAGTCTTCT
7716651 ATATGATTTA
Statistics
Matches: 96, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
103 63 0.66
104 33 0.34
ACGTcount: A:0.47, C:0.10, G:0.20, T:0.23
Consensus pattern (104 bp):
GAAGTTAAAGCAAAAAGTGTGTTAGGATTCAAAACAATATGTTTATGAGGAAATAAAAAACAAAT
AGCAAAGTAGCAAAAGTAACAACCAGGAGTCTTCTGTAC
Found at i:7720172 original size:21 final size:23
Alignment explanation
Indices: 7720141--7720196 Score: 75
Period size: 21 Copynumber: 2.6 Consensus size: 23
7720131 TTTGACTTGA
7720141 AATTAATAAAATATTATT-TTTTT
1 AATT-ATAAAATATTATTATTTTT
7720164 AA-TATAAAA-A-TATTATTTTT
1 AATTATAAAATATTATTATTTTT
7720184 AATTATAAAATAT
1 AATTATAAAATAT
7720197 AACTTTTAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
19 4 0.14
20 8 0.28
21 13 0.45
22 2 0.07
23 2 0.07
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (23 bp):
AATTATAAAATATTATTATTTTT
Found at i:7720184 original size:20 final size:21
Alignment explanation
Indices: 7720148--7720212 Score: 71
Period size: 20 Copynumber: 3.1 Consensus size: 21
7720138 TGAAATTAAT
7720148 AAAATATTATTTTTTTAATATA
1 AAAATATTA-TTTTTTAATATA
7720170 AAAATATTA-TTTTTAAT-TA
1 AAAATATTATTTTTTAATATA
* * *
7720189 TAAAATATAACTTTTAAATATA
1 -AAAATATTATTTTTTAATATA
7720211 AA
1 AA
7720213 TATAAAATTA
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
19 2 0.05
20 16 0.42
21 9 0.24
22 11 0.29
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.48
Consensus pattern (21 bp):
AAAATATTATTTTTTAATATA
Found at i:7720805 original size:17 final size:17
Alignment explanation
Indices: 7720780--7720815 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
7720770 GGCTTCTCCT
* *
7720780 TTATTTCTGAGACTTTC
1 TTATCTCTGACACTTTC
7720797 TTATCTCTGACACTTTC
1 TTATCTCTGACACTTTC
7720814 TT
1 TT
7720816 CTGCTTTTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.17, C:0.22, G:0.08, T:0.53
Consensus pattern (17 bp):
TTATCTCTGACACTTTC
Found at i:7731422 original size:26 final size:26
Alignment explanation
Indices: 7731393--7731444 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
7731383 AATTAAAAAA
7731393 ATTAAAAGTAATATACATGACAGTCT
1 ATTAAAAGTAATATACATGACAGTCT
7731419 ATTAAAAGTAATATACATGACAGTCT
1 ATTAAAAGTAATATACATGACAGTCT
7731445 TTTGAACTCG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.46, C:0.12, G:0.12, T:0.31
Consensus pattern (26 bp):
ATTAAAAGTAATATACATGACAGTCT
Found at i:7743084 original size:16 final size:16
Alignment explanation
Indices: 7743044--7743088 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
7743034 TAAAAATTAT
7743044 ATTAATAA-TTT-AAA
1 ATTAATAATTTTAAAA
7743058 A-TATATAAATTTTAAAA
1 ATTA-AT-AATTTTAAAA
7743075 ATTAATAATTTTAA
1 ATTAATAATTTTAA
7743089 TTAATAAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
13 2 0.08
14 3 0.12
15 2 0.08
16 11 0.42
17 6 0.23
18 2 0.08
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
ATTAATAATTTTAAAA
Found at i:7743776 original size:29 final size:29
Alignment explanation
Indices: 7743718--7743776 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
7743708 AATTATAATG
* * *
7743718 AAATATTTAATATGATATTTAAATTTTAA
1 AAATATATAATATGATATTTAAACTGTAA
7743747 AAATATATAATATGATATTTAAACTGTAA
1 AAATATATAATATGATATTTAAACTGTAA
7743776 A
1 A
7743777 TTTAATAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.51, C:0.02, G:0.05, T:0.42
Consensus pattern (29 bp):
AAATATATAATATGATATTTAAACTGTAA
Found at i:7744071 original size:4 final size:4
Alignment explanation
Indices: 7744062--7744088 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
7744052 ACAAGACCCA
7744062 AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAA
7744089 GGAGCCAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:7748821 original size:36 final size:36
Alignment explanation
Indices: 7748774--7748847 Score: 139
Period size: 36 Copynumber: 2.1 Consensus size: 36
7748764 CATTCAACTG
*
7748774 CTTCTTGAATATAGCCAACAAGTCTTAACTAAAGCT
1 CTTCTTGAATATAGCCAACAAGTCTTAACCAAAGCT
7748810 CTTCTTGAATATAGCCAACAAGTCTTAACCAAAGCT
1 CTTCTTGAATATAGCCAACAAGTCTTAACCAAAGCT
7748846 CT
1 CT
7748848 CTTTCAAAGT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.35, C:0.24, G:0.11, T:0.30
Consensus pattern (36 bp):
CTTCTTGAATATAGCCAACAAGTCTTAACCAAAGCT
Found at i:7759500 original size:21 final size:19
Alignment explanation
Indices: 7759476--7759520 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
7759466 ATATATAAAG
*
7759476 TTATTAAAAATTAAATTTTAA
1 TTATT-AAAATTAAAATTT-A
*
7759497 TTATTGAAATTAAAATTTA
1 TTATTAAAATTAAAATTTA
7759516 TTATT
1 TTATT
7759521 TTATCAATAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 6 0.27
20 11 0.50
21 5 0.23
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (19 bp):
TTATTAAAATTAAAATTTA
Found at i:7759520 original size:19 final size:20
Alignment explanation
Indices: 7759483--7759520 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
7759473 AAGTTATTAA
*
7759483 AAATTAAATTTTAATTATTG
1 AAATTAAAATTTAATTATTG
7759503 AAATTAAAATTT-ATTATT
1 AAATTAAAATTTAATTATT
7759521 TTATCAATAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (20 bp):
AAATTAAAATTTAATTATTG
Found at i:7783192 original size:25 final size:24
Alignment explanation
Indices: 7783146--7783192 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
7783136 TTTCTTAGTC
**
7783146 TTTTTTTTTTGAAATAGTATTAAG
1 TTTTTTTTTTGAAATACAATTAAG
7783170 TTTTTTTTTTGAAATTACAATTA
1 TTTTTTTTTTGAAA-TACAATTA
7783193 TAATCAATGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 14 0.70
25 6 0.30
ACGTcount: A:0.30, C:0.02, G:0.09, T:0.60
Consensus pattern (24 bp):
TTTTTTTTTTGAAATACAATTAAG
Found at i:7783264 original size:24 final size:24
Alignment explanation
Indices: 7783210--7783276 Score: 82
Period size: 24 Copynumber: 2.8 Consensus size: 24
7783200 TGAAGTGTTA
* *
7783210 AATCATATTCATATAATTAATTGAAT
1 AATCA-ATTAATATAATT-ATTAAAT
*
7783236 AATCAATTATTATAATTATTAAAT
1 AATCAATTAATATAATTATTAAAT
7783260 AATCAATTAATA-AATTA
1 AATCAATTAATATAATTA
7783277 AAACATAATT
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
23 5 0.14
24 17 0.46
25 10 0.27
26 5 0.14
ACGTcount: A:0.51, C:0.06, G:0.01, T:0.42
Consensus pattern (24 bp):
AATCAATTAATATAATTATTAAAT
Found at i:7784142 original size:19 final size:19
Alignment explanation
Indices: 7784118--7784165 Score: 69
Period size: 19 Copynumber: 2.5 Consensus size: 19
7784108 TATATAAAAT
7784118 AAATACAATAATAATAGAC
1 AAATACAATAATAATAGAC
* *
7784137 AAATACGATAATAGTAGAC
1 AAATACAATAATAATAGAC
*
7784156 AAATAAAATA
1 AAATACAATA
7784166 GGAAATCTAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.62, C:0.08, G:0.08, T:0.21
Consensus pattern (19 bp):
AAATACAATAATAATAGAC
Found at i:7786895 original size:24 final size:24
Alignment explanation
Indices: 7786863--7786913 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
7786853 GAACATTATT
* *
7786863 GATACAAGTTACTT-TACAATGTAA
1 GATAAAAGTTA-TTGTACAATATAA
7786887 GATAAAAGTTATTGTACAATATAA
1 GATAAAAGTTATTGTACAATATAA
7786911 GAT
1 GAT
7786914 GCATCCAGCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 2 0.08
24 22 0.92
ACGTcount: A:0.45, C:0.08, G:0.14, T:0.33
Consensus pattern (24 bp):
GATAAAAGTTATTGTACAATATAA
Found at i:7798800 original size:22 final size:22
Alignment explanation
Indices: 7798775--7798817 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
7798765 TAAGATTGAG
7798775 ATCAAAATCACTAAATGATCAC
1 ATCAAAATCACTAAATGATCAC
*
7798797 ATCAAAATCACTTAATGATCA
1 ATCAAAATCACTAAATGATCA
7798818 AACAAGAGTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.49, C:0.21, G:0.05, T:0.26
Consensus pattern (22 bp):
ATCAAAATCACTAAATGATCAC
Found at i:7804091 original size:17 final size:17
Alignment explanation
Indices: 7804069--7804103 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
7804059 AAAGATTTTT
7804069 TTTTTATTGTTTTGGGA
1 TTTTTATTGTTTTGGGA
* *
7804086 TTTTTATTTTTTTTGGA
1 TTTTTATTGTTTTGGGA
7804103 T
1 T
7804104 CTTGAAATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.11, C:0.00, G:0.17, T:0.71
Consensus pattern (17 bp):
TTTTTATTGTTTTGGGA
Found at i:7804595 original size:3 final size:3
Alignment explanation
Indices: 7804589--7804628 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
7804579 TTTTTTTTAC
7804589 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
7804629 CTTTAATGAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:7808121 original size:125 final size:125
Alignment explanation
Indices: 7807890--7808127 Score: 284
Period size: 125 Copynumber: 1.9 Consensus size: 125
7807880 AGTAAGATCT
* * * *
7807890 TTAAAATTTTGGGTAAGCTAAATAAAGGAAATGTAGTGGAGGAAAATATTTCTCATGAAGTTATC
1 TTAAAATTTTAGGTAAACTAAATAAAGGAAATGTAGTAGAGGAAAACATTTCTCATGAAGTTATC
* * * * **
7807955 GATCCACTGTATCTTTCAGGTTATGGCCCGTATTAGGCCCAATCCACTTCGCTAAAATCC
66 AATCCACTGTATCTCTCAGGTTATGGCCCATATCAAACCCAATCCACTTCGCTAAAATCC
* *
7808015 TTAAAGTTTTAGGTAAACTAAATAAGGGAAA-GATAGTAGAGGAAAACATTT-TGCATGAAGTTA
1 TTAAAATTTTAGGTAAACTAAATAAAGGAAATG-TAGTAGAGGAAAACATTTCT-CATGAAGTTA
* * * *
7808078 TTAATCCATTGTATC-CTCTGAGTTATGGCCTATATCAAACCCAATCCACT
64 TCAATCCACTGTATCTCTCAG-GTTATGGCCCATATCAAACCCAATCCACT
7808128 AAAAGCTTCT
Statistics
Matches: 94, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
124 5 0.05
125 89 0.95
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.31
Consensus pattern (125 bp):
TTAAAATTTTAGGTAAACTAAATAAAGGAAATGTAGTAGAGGAAAACATTTCTCATGAAGTTATC
AATCCACTGTATCTCTCAGGTTATGGCCCATATCAAACCCAATCCACTTCGCTAAAATCC
Found at i:7816257 original size:66 final size:65
Alignment explanation
Indices: 7816084--7816257 Score: 172
Period size: 65 Copynumber: 2.6 Consensus size: 65
7816074 TCAACCTTGA
* * * * * *
7816084 TTCAATCTAGGTCATTTTATTTTTTTGACTTGTGGTTCAATCCCGATTAGTCTTCTTCAGTCTTA
1 TTCAGTCTAGGTCATTTTA-TTTTTTGACCTATGGTTCAATCCCAATTACTCATCTTCAGTCTTA
7816149 G
65 G
* * ** *
7816150 TTTAGTCCAAATCA-TTTATTTTTCTGACCTATGGTTCAATCCCAATTACTCATCTTC-GATTTT
1 TTCAGTCTAGGTCATTTTATTTTT-TGACCTATGGTTCAATCCCAATTACTCATCTTCAG-TCTT
*
7816213 GG
64 AG
* *
7816215 TTCAGTCTAGGTCATTTTATCTTTTTAACCTATGGTTTAATCC
1 TTCAGTCTAGGTCATTTTAT-TTTTTGACCTATGGTTCAATCC
7816258 TAGTCACTCA
Statistics
Matches: 86, Mismatches: 18, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
64 6 0.07
65 46 0.53
66 30 0.35
67 4 0.05
ACGTcount: A:0.21, C:0.20, G:0.13, T:0.47
Consensus pattern (65 bp):
TTCAGTCTAGGTCATTTTATTTTTTGACCTATGGTTCAATCCCAATTACTCATCTTCAGTCTTAG
Found at i:7816423 original size:64 final size:65
Alignment explanation
Indices: 7816286--7816425 Score: 156
Period size: 65 Copynumber: 2.2 Consensus size: 65
7816276 CTTGGTTATG
* * **
7816286 TTCAGATCATTTATTTTTTTAACTTGTGATTCAATCCCGATCAATTATATTCGATCTTAACTCGA
1 TTCA-ATCATTCATTTTTCTAACTTACGATTCAATCCCGATCAATTATATTCGATCTTAACTCGA
7816351 T
65 T
* * * * * * * *
7816352 CTAAATCATTCATTTTTCTAACTTACGATTTAATCGCGATCATTTAT-TTTGATCTTGACTCGGT
1 TTCAATCATTCATTTTTCTAACTTACGATTCAATCCCGATCAATTATATTCGATCTTAACTCGAT
7816416 TTCAATCATT
1 TTCAATCATT
7816426 TTCACATGAC
Statistics
Matches: 60, Mismatches: 14, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
64 22 0.37
65 36 0.60
66 2 0.03
ACGTcount: A:0.26, C:0.19, G:0.09, T:0.46
Consensus pattern (65 bp):
TTCAATCATTCATTTTTCTAACTTACGATTCAATCCCGATCAATTATATTCGATCTTAACTCGAT
Found at i:7818981 original size:2 final size:2
Alignment explanation
Indices: 7818976--7819016 Score: 50
Period size: 2 Copynumber: 21.5 Consensus size: 2
7818966 AAAAAAAAAT
* *
7818976 TA TA TA CA TA T- TA TA TA -A TA TA TA TA TA TA TT TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7819016 T
1 T
7819017 TAAAACCTAT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
1 2 0.06
2 31 0.94
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:7819119 original size:19 final size:18
Alignment explanation
Indices: 7819087--7819134 Score: 51
Period size: 19 Copynumber: 2.6 Consensus size: 18
7819077 AATCAATATC
* *
7819087 TATTATTTTATTTTGAATA
1 TATTATTAT-TTTTGAAAA
*
7819106 TATTATATATTTTTTAAAA
1 TATTAT-TATTTTTGAAAA
7819125 TATTATTATT
1 TATTATTATT
7819135 CATATTCTCG
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
18 4 0.16
19 19 0.76
20 2 0.08
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.62
Consensus pattern (18 bp):
TATTATTATTTTTGAAAA
Found at i:7821302 original size:24 final size:24
Alignment explanation
Indices: 7821270--7821320 Score: 93
Period size: 24 Copynumber: 2.1 Consensus size: 24
7821260 GAACATTATT
*
7821270 GATAAAAGTTATTTTACAATATAA
1 GATAAAAGTTATTGTACAATATAA
7821294 GATAAAAGTTATTGTACAATATAA
1 GATAAAAGTTATTGTACAATATAA
7821318 GAT
1 GAT
7821321 GCGTCCAGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.49, C:0.04, G:0.12, T:0.35
Consensus pattern (24 bp):
GATAAAAGTTATTGTACAATATAA
Found at i:7824222 original size:150 final size:150
Alignment explanation
Indices: 7823948--7824263 Score: 544
Period size: 150 Copynumber: 2.1 Consensus size: 150
7823938 AAACGGCATT
* *
7823948 AACATTTCTAAAAGAAACAAAGCTCGGTTTCCTTACTCAAGCCAAAATTCAAAGAACAAAACTTG
1 AACATTTCTAGAAGAAACAAAGCTCAGTTTCCTTACTCAAGCCAAAATTCAAAGAACAAAACTTG
* * *
7824013 AATGTGCTAAAAAGTTTGCGGTAAAAAAAAAAAAAACCCTAACCTTAAAATTCACTGAAAATTTT
66 AATGTGCTAAAAACTTTACGGTAAAAAAAAAAAAAACCCTAACCTTAAAATTCAATGAAAATTTT
*
7824078 AGAATATAAAACTTTCAGAA
131 AGAACATAAAACTTTCAGAA
7824098 AACATTTCTAGAAGAAACAAAGCTCAGTTTCCTTACTCAAGCCAAAATTCAAAGAACAAAACTTG
1 AACATTTCTAGAAGAAACAAAGCTCAGTTTCCTTACTCAAGCCAAAATTCAAAGAACAAAACTTG
*
7824163 AATGTGCTAAAAACTTTACGGTAAAAAAATAAAAAACCCTAACCTTAAAATTCAATGAAAATTTT
66 AATGTGCTAAAAACTTTACGGTAAAAAAAAAAAAAACCCTAACCTTAAAATTCAATGAAAATTTT
*
7824228 AGAGCATAAAACTTTCAGAA
131 AGAACATAAAACTTTCAGAA
*
7824248 AACATTTAT-GAAGAAA
1 AACATTTCTAGAAGAAA
7824264 AAACTTGAAC
Statistics
Matches: 157, Mismatches: 9, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
149 7 0.04
150 150 0.96
ACGTcount: A:0.48, C:0.16, G:0.10, T:0.25
Consensus pattern (150 bp):
AACATTTCTAGAAGAAACAAAGCTCAGTTTCCTTACTCAAGCCAAAATTCAAAGAACAAAACTTG
AATGTGCTAAAAACTTTACGGTAAAAAAAAAAAAAACCCTAACCTTAAAATTCAATGAAAATTTT
AGAACATAAAACTTTCAGAA
Found at i:7824428 original size:19 final size:19
Alignment explanation
Indices: 7824391--7824431 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
7824381 AGCTGCATAG
* **
7824391 TAAAAAAAAATAACTAAAC
1 TAAAAAAAAAAAAAAAAAC
7824410 TAAAAAAAAAAAAAAAAAC
1 TAAAAAAAAAAAAAAAAAC
7824429 TAA
1 TAA
7824432 CGGAGGAAAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.80, C:0.07, G:0.00, T:0.12
Consensus pattern (19 bp):
TAAAAAAAAAAAAAAAAAC
Found at i:7828619 original size:15 final size:15
Alignment explanation
Indices: 7828596--7828636 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
7828586 TACATTTTTC
*
7828596 TTTTGTTGTTAAAAT
1 TTTTATTGTTAAAAT
*
7828611 TTTTATTGTTAAATT
1 TTTTATTGTTAAAAT
*
7828626 TTTTTTTGTTA
1 TTTTATTGTTA
7828637 TTTTGTTGCT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.22, C:0.00, G:0.10, T:0.68
Consensus pattern (15 bp):
TTTTATTGTTAAAAT
Found at i:7837157 original size:24 final size:22
Alignment explanation
Indices: 7837109--7837213 Score: 70
Period size: 24 Copynumber: 4.5 Consensus size: 22
7837099 TGTTTTCTGC
7837109 TTTTATTTTAATTTTA-TTTACTT
1 TTTTATTTT-ATTTTATTTTA-TT
7837132 TTTCTATTTTATTTTCATTTTATT
1 TTT-TATTTTATTTT-ATTTTATT
* *
7837156 TTTAGATTTT-TTTTATTTTTACT
1 TTT-TATTTTATTTTA-TTTTATT
* *
7837179 TATTATTATTATTTTCATCTTTAAT
1 TTTTATT-TTATTTT-AT-TTTATT
*
7837204 TATTATTTTA
1 TTTTATTTTA
7837214 CTTATTACTT
Statistics
Matches: 68, Mismatches: 6, Indels: 15
0.76 0.07 0.17
Matches are distributed among these distances:
22 4 0.06
23 22 0.32
24 25 0.37
25 17 0.25
ACGTcount: A:0.22, C:0.06, G:0.01, T:0.71
Consensus pattern (22 bp):
TTTTATTTTATTTTATTTTATT
Found at i:7837192 original size:19 final size:19
Alignment explanation
Indices: 7837168--7837220 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 19
7837158 TAGATTTTTT
7837168 TTATTTTTACTTATTATTA
1 TTATTTTTACTTATTATTA
* *
7837187 TTATTTTCATCTT-TAATTA
1 TTATTTTTA-CTTATTATTA
7837206 TTA-TTTTACTTATTA
1 TTATTTTTACTTATTA
7837221 CTTTAAATTG
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
17 3 0.11
18 6 0.21
19 16 0.57
20 3 0.11
ACGTcount: A:0.26, C:0.08, G:0.00, T:0.66
Consensus pattern (19 bp):
TTATTTTTACTTATTATTA
Found at i:7837201 original size:25 final size:23
Alignment explanation
Indices: 7837136--7837210 Score: 64
Period size: 25 Copynumber: 3.2 Consensus size: 23
7837126 TTACTTTTTC
*
7837136 TATT-TTATTTTCATTTTATTTT
1 TATTATTATTTTCATTTTATTAT
* * *
7837158 TA-GATTTTTTTTATTTTTACTTAT
1 TATTATTATTTTCA-TTTTA-TTAT
7837182 TATTATTATTTTCATCTTTAATTAT
1 TATTATTATTTTCAT-TTT-ATTAT
7837207 TATT
1 TATT
7837211 TTACTTATTA
Statistics
Matches: 40, Mismatches: 7, Indels: 9
0.71 0.12 0.16
Matches are distributed among these distances:
22 9 0.22
23 5 0.12
24 6 0.15
25 19 0.47
26 1 0.03
ACGTcount: A:0.23, C:0.05, G:0.01, T:0.71
Consensus pattern (23 bp):
TATTATTATTTTCATTTTATTAT
Found at i:7838736 original size:17 final size:18
Alignment explanation
Indices: 7838684--7838737 Score: 58
Period size: 17 Copynumber: 3.1 Consensus size: 18
7838674 CTATCTATTT
*
7838684 TCATTCATTTCATGCATC-
1 TCATTCA-TTCATACATCA
*
7838702 TCATTCATTCATAGATCA
1 TCATTCATTCATACATCA
*
7838720 TCA-TCATTCATTCATCA
1 TCATTCATTCATACATCA
7838737 T
1 T
7838738 GTCAATGCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
17 21 0.68
18 10 0.32
ACGTcount: A:0.28, C:0.26, G:0.04, T:0.43
Consensus pattern (18 bp):
TCATTCATTCATACATCA
Found at i:7843854 original size:22 final size:22
Alignment explanation
Indices: 7843814--7843855 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
7843804 ATTTTAGAAT
*
7843814 CAAGATTTGTAAGATTTTCGGG
1 CAAGATTTATAAGATTTTCGGG
7843836 CAAGATTTATAA-ATCTTTCG
1 CAAGATTTATAAGAT-TTTCG
7843856 AACTGAATCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 2 0.11
22 16 0.89
ACGTcount: A:0.31, C:0.12, G:0.19, T:0.38
Consensus pattern (22 bp):
CAAGATTTATAAGATTTTCGGG
Found at i:7844432 original size:16 final size:16
Alignment explanation
Indices: 7844386--7844432 Score: 51
Period size: 18 Copynumber: 2.9 Consensus size: 16
7844376 GTTTGTCTTA
7844386 TTTATTTATTTA-TCT
1 TTTATTTATTTAGTCT
*
7844401 TTTTTTATATTTTAGTCT
1 TTTATT-TA-TTTAGTCT
*
7844419 TTTATTTATCTAGT
1 TTTATTTATTTAGT
7844433 TTTAAATCTT
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
15 5 0.19
16 7 0.27
17 6 0.23
18 8 0.31
ACGTcount: A:0.19, C:0.06, G:0.04, T:0.70
Consensus pattern (16 bp):
TTTATTTATTTAGTCT
Found at i:7845211 original size:23 final size:22
Alignment explanation
Indices: 7845177--7845248 Score: 90
Period size: 23 Copynumber: 3.1 Consensus size: 22
7845167 GCAGGTTTTC
*
7845177 TTTTTTTTTATTTCATCTTATT
1 TTTTTTTTTATTTCATTTTATT
*
7845199 TTTTGTTTTTATTTTATTTTACTT
1 TTTT-TTTTTATTTCATTTTA-TT
*
7845223 TTTTATTTTATTTTCATTTTATT
1 TTTTTTTTTA-TTTCATTTTATT
7845246 TTT
1 TTT
7845249 AGATTTTTTA
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
22 4 0.09
23 24 0.56
24 15 0.35
ACGTcount: A:0.14, C:0.06, G:0.01, T:0.79
Consensus pattern (22 bp):
TTTTTTTTTATTTCATTTTATT
Found at i:7845213 original size:6 final size:6
Alignment explanation
Indices: 7845198--7845301 Score: 54
Period size: 6 Copynumber: 16.7 Consensus size: 6
7845188 TTCATCTTAT
* *
7845198 TTTTTG TTTTTA -TTTTA -TTTTA CTTTTT- TATTTTA TTTTCA -TTTTA
1 TTTTTA TTTTTA TTTTTA TTTTTA -TTTTTA T-TTTTA TTTTTA TTTTTA
* * * *
7845244 TTTTTAGA TTTTTTA TTTTTA CTTATTA TTATTA TTTCTCA TCTTTA TTTATTA
1 TTTTT--A -TTTTTA TTTTTA -TTTTTA TTTTTA TTT-TTA TTTTTA TTT-TTA
7845298 TTTT
1 TTTT
7845302 ACTCATTATT
Statistics
Matches: 78, Mismatches: 9, Indels: 22
0.72 0.08 0.20
Matches are distributed among these distances:
5 15 0.19
6 36 0.46
7 21 0.27
8 1 0.01
9 5 0.06
ACGTcount: A:0.18, C:0.06, G:0.02, T:0.74
Consensus pattern (6 bp):
TTTTTA
Done.