Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19866354
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 74000 characters in sequence are not A, C, G, or T
File 27 of 100
Found at i:7845245 original size:47 final size:44
Alignment explanation
Indices: 7845172--7845293 Score: 124
Period size: 47 Copynumber: 2.7 Consensus size: 44
7845162 CAATCGCAGG
* * * *
7845172 TTTT-CTTTTT-TTTTA-TTTCATCTTATTTTTTGTTTTTATTTT
1 TTTTACTTTTTATTTTATTTTCATTTTATTTTTAGATTTT-TTAT
7845214 ATTTTACTTTTTTATTTTATTTTCATTTTATTTTTAGATTTTTTAT
1 -TTTTAC-TTTTTATTTTATTTTCATTTTATTTTTAGATTTTTTAT
*
7845260 TTTTACTTATTATTATTATTTCTCATCTTTATTT
1 TTTTACTTTTTATT-TTATTT-TCAT-TTTATTT
7845294 ATTATTTTAC
Statistics
Matches: 67, Mismatches: 5, Indels: 10
0.82 0.06 0.12
Matches are distributed among these distances:
43 4 0.06
44 8 0.12
45 17 0.25
46 12 0.18
47 26 0.39
ACGTcount: A:0.16, C:0.07, G:0.02, T:0.75
Consensus pattern (44 bp):
TTTTACTTTTTATTTTATTTTCATTTTATTTTTAGATTTTTTAT
Found at i:7845262 original size:5 final size:5
Alignment explanation
Indices: 7845172--7845247 Score: 61
Period size: 5 Copynumber: 15.8 Consensus size: 5
7845162 CAATCGCAGG
* * * * *
7845172 TTTTC TTTTT TTTTA TTTCA TCTTA TTTT- TTGT- TTTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
*
7845220 -CTT- TTTTA TTTTA TTTTCA TTTTA TTTT
1 TTTTA TTTTA TTTTA TTTT-A TTTTA TTTT
7845248 TAGATTTTTT
Statistics
Matches: 57, Mismatches: 10, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
4 10 0.18
5 42 0.74
6 5 0.09
ACGTcount: A:0.13, C:0.07, G:0.01, T:0.79
Consensus pattern (5 bp):
TTTTA
Found at i:7845310 original size:19 final size:19
Alignment explanation
Indices: 7845260--7845312 Score: 56
Period size: 19 Copynumber: 2.8 Consensus size: 19
7845250 GATTTTTTAT
*
7845260 TTTTACTTATTA-TTATTA
1 TTTTACTCATTATTTATTA
*
7845278 TTTCT-CATCTTTATTTATTA
1 TTT-TAC-TCATTATTTATTA
7845298 TTTTACTCATTATTT
1 TTTTACTCATTATTT
7845313 TAAATTAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
18 4 0.14
19 14 0.50
20 10 0.36
ACGTcount: A:0.23, C:0.11, G:0.00, T:0.66
Consensus pattern (19 bp):
TTTTACTCATTATTTATTA
Found at i:7856218 original size:2 final size:2
Alignment explanation
Indices: 7856211--7856252 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
7856201 GAAAGTCTCA
7856211 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7856253 CTTAATTTGC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7862318 original size:3 final size:3
Alignment explanation
Indices: 7862310--7862338 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
7862300 CTATATAAAA
7862310 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
7862339 CTTCTGAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:7865284 original size:64 final size:61
Alignment explanation
Indices: 7865213--7865379 Score: 149
Period size: 63 Copynumber: 2.6 Consensus size: 61
7865203 TTAAATGAGT
* * *
7865213 TTTTTTACATAATACGCCTTTAATAATCCCTT-CCTTTTTATCAGAGCAATATCAGTGAAGGTAA
1 TTTTTTACATAATACGCCTTCAATAATCCCTTAACTTTTTA--A-AGAAAT-TCAGTGAAGGTAA
* * * * * *
7865277 TTTTTTACCA-AAAACGTCTTCAATAATCTACTTTAACTTTTTAAAGAAATTTATTGAAGGTAT
1 TTTTTTA-CATAATACGCCTTCAATAATC--CCTTAACTTTTTAAAGAAATTCAGTGAAGGTAA
* *
7865340 TTTTTTGCATAATACGCCTTCAATAATCCCCTTAAATTTT
1 TTTTTTACATAATACGCCTTCAATAAT-CCCTTAACTTTT
7865380 AATGAGGAGA
Statistics
Matches: 83, Mismatches: 14, Indels: 14
0.75 0.13 0.13
Matches are distributed among these distances:
62 11 0.13
63 31 0.37
64 28 0.34
65 3 0.04
66 3 0.04
67 7 0.08
ACGTcount: A:0.32, C:0.17, G:0.08, T:0.42
Consensus pattern (61 bp):
TTTTTTACATAATACGCCTTCAATAATCCCTTAACTTTTTAAAGAAATTCAGTGAAGGTAA
Found at i:7865943 original size:62 final size:60
Alignment explanation
Indices: 7865728--7865943 Score: 150
Period size: 62 Copynumber: 3.4 Consensus size: 60
7865718 TTAACTACTA
* * *
7865728 ATGCCTTCACTAATTCCCTTAAATTTTTT-GAAAGAATTTATTAAAAGCATTTTTTGCATAAT
1 ATGCCTTCAATAATTCCCTT-AATTTTTTAGAAA-AATTTATTAAAGGCATTTTTTACAT-AT
* * * * * * * * *
7865790 ACGCCTTCAATAA-TCCCTTCCATTTTTATCAGGAGAATATTAGTGAAGGTAATTTTCTAC-TAA
1 ATGCCTTCAATAATTCCCTT-AATTTTT-T-AGAAAAAT-TTATTAAAGG-CATTTTTTACATAT
** *
7865853 AAACACATTCAATAATTCACTCTAATTTTTTAGAAAAATTTATTAAAGGCATTTTTTACATCAT
1 ATGC-C-TTCAATAATTCCCT-TAATTTTTTAGAAAAATTTATTAAAGGCATTTTTTACAT-AT
*
7865917 ATGCCTTCAATAATCCCCTTAGATTTT
1 ATGCCTTCAATAATTCCCTTA-ATTTT
7865944 AACAAAAAGA
Statistics
Matches: 114, Mismatches: 28, Indels: 24
0.69 0.17 0.14
Matches are distributed among these distances:
61 14 0.12
62 37 0.32
63 16 0.14
64 20 0.18
65 16 0.14
66 10 0.09
67 1 0.01
ACGTcount: A:0.34, C:0.17, G:0.08, T:0.40
Consensus pattern (60 bp):
ATGCCTTCAATAATTCCCTTAATTTTTTAGAAAAATTTATTAAAGGCATTTTTTACATAT
Found at i:7865989 original size:565 final size:563
Alignment explanation
Indices: 7864908--7866058 Score: 1388
Period size: 565 Copynumber: 2.0 Consensus size: 563
7864898 TTTTTTTATA
* * *
7864908 TATAAAACGCCTTTAATAATCC-TCAATGTTTGTGGATAGGATTATTAAAGGTATTTTGGCATAA
1 TATAAAATGCCTTTAATAATCCTTCAATGTTTGTGGATAGAATTATTAAACGTATTTTGGCATAA
** * * * *
7864972 AATACCTTTAATAAATAAGGTATTGAAAAAATATACTAGATTATTGAAGCATATTCTAAAAAAAA
66 AATACCTCCAATAAACAAGGTATTGAAAAAATAGACCAGATTATTAAAGCATATTCTAAAAAAAA
* *
7865037 TATATCTTCAATAAATTCTTTTTAAAAAATTTTTAGGATTATTAAAGGCTTCTTTTAGTAAAAAA
131 TATACCTTCAATAAATTCTTTTCAAAAAATTTTTAGGATTATTAAAGGCTTCTTTTAGTAAAAAA
* * *
7865102 TGCTTTCAATAATCTCGTAGTAAAATTTTAAAAAGATTATTGAAAGCATTTTTTACTACAAATGC
196 TCCTTTCAATAATCTCGTAGTAAAATTTTAAAAAGATTACTGAAAGCATTTTTAACTACAAATGC
* * *
7865167 ATTCACTACTTCTCTCAAATTTTTTAAAGGAATTTATTAAATGAGTTTTTTTACATAATACGCCT
261 ATTCACTAATTCCCTCAAATTTTTTAAAGGAATTTATTAAA-GAGATTTTTTACATAATACGCCT
* * *
7865232 TTAATAATCCCTTCCTTTTTATCAGAGCAATATCAGTGAAGGTAATTTTTTACCAAAAACGTCTT
325 TCAATAATCCCTTCCTTTTTATCAGAGCAATATCAGTGAAGGTAATTTTCTACCAAAAACGACTT
* * * *
7865297 CAATAATCTACTTTAACTTTTTAAAGAAATTTATTGAAGGTATTTTTTTGCATAATACGCCTTCA
390 CAATAATCTACTCTAACTTTTTAAAGAAATTTATTAAAGGCATTTTTTTACATAATACGCCTTCA
** ** * **
7865362 ATAATCCCCTTAAATTTTAATGAGGAGATTTTTGAAAGCATTTTTGACTAAAAATTCTTCAATAA
455 ATAATCCCCTTAAATTTTAACAAAAAGAATTTTGAAAGCATTTTTGACTAAAAAGCCTTCAATAA
* *
7865427 T-CTCATCTTCAAAATTTTTAAAGGAAATTATTTAAGGTATTTTTT
520 TACTC-TCTTCAAAAATTTTAAA-AAAATTATTTAAGGTATTTTTT
* *
7865472 TATAAAATGCCTTTAATAATCCTTGTAATGTTTTTTGG-TAGAATTATTGAAGACGT-TTTTGGC
1 TATAAAATGCCTTTAATAATCCTT-CAATG-TTTGTGGATAGAATTATT-AA-ACGTATTTTGGC
* * * *
7865535 ATAAAATGCCTCCAATAAACAAGGTATTGAAAAAATGGGCCAGATTATTAAAGACGT-TT-T-AA
62 ATAAAATACCTCCAATAAACAAGGTATTGAAAAAATAGACCAGATTATTAAAG-CATATTCTAAA
* *
7865597 AAAAAT-TACCTTTAATAAATT-TCTTTCAAAAATTTTTTAGGA-TATTAAAGG-TGTCTTTTAG
126 AAAAATATACCTTCAATAAATTCT-TTTCAAAAAATTTTTAGGATTATTAAAGGCT-TCTTTTAG
** * *
7865658 TAAAAAAAATACCTTT-AATAATCTCGTAGTAAAATTTT-AATTGAATTACTGAAGGTATTTTTA
189 T--AAAAAAT-CCTTTCAATAATCTCGTAGTAAAATTTTAAAAAG-ATTACTGAAAGCATTTTTA
* * * *
7865721 ACTACTAATGCCTTCACTAATTCCCTTAAATTTTTTGAAA-GAATTTATTAAA-AGCATTTTTTG
250 ACTACAAATGCATTCACTAATTCCCTCAAATTTTTT-AAAGGAATTTATTAAAGAG-ATTTTTTA
*
7865784 CATAATACGCCTTCAATAATCCCTTCCATTTTTATCAGGAG-AATATTAGTGAAGGTAATTTTCT
313 CATAATACGCCTTCAATAATCCCTTCC-TTTTTATCA-GAGCAATATCAGTGAAGGTAATTTTCT
* *
7865848 ACTAAAAAC-ACATTCAATAAT-TCACTCTAATTTTTTAGAA-AAATTTATTAAAGGCA-TTTTT
376 ACCAAAAACGAC-TTCAATAATCT-ACTCTAACTTTTTA-AAGAAATTTATTAAAGGCATTTTTT
* * * * *
7865909 TACATCATATGCCTTCAATAATCCCCTTAGATTTTAACAAAAAGAATTTTGAAGGCGTTTTTGAC
438 TACATAATACGCCTTCAATAATCCCCTTAAATTTTAACAAAAAGAATTTTGAAAGCATTTTTGAC
* * * *
7865974 TAACAACGCCTTCAATAATATTCTTTTCAAAAATTTTAAAAAAATTATTTGAGGTATTTTTT
503 TAA-AAAGCCTTCAATAATACTCTCTTCAAAAATTTTAAAAAAATTATTTAAGGTATTTTTT
* * *
7866036 TATAAATTGCATTCAATAATCCT
1 TATAAAATGCCTTTAATAATCCT
7866059 CCTAATATAA
Statistics
Matches: 502, Mismatches: 64, Indels: 42
0.83 0.11 0.07
Matches are distributed among these distances:
562 1 0.00
563 21 0.04
564 190 0.38
565 196 0.39
566 28 0.06
567 61 0.12
568 5 0.01
ACGTcount: A:0.37, C:0.13, G:0.10, T:0.40
Consensus pattern (563 bp):
TATAAAATGCCTTTAATAATCCTTCAATGTTTGTGGATAGAATTATTAAACGTATTTTGGCATAA
AATACCTCCAATAAACAAGGTATTGAAAAAATAGACCAGATTATTAAAGCATATTCTAAAAAAAA
TATACCTTCAATAAATTCTTTTCAAAAAATTTTTAGGATTATTAAAGGCTTCTTTTAGTAAAAAA
TCCTTTCAATAATCTCGTAGTAAAATTTTAAAAAGATTACTGAAAGCATTTTTAACTACAAATGC
ATTCACTAATTCCCTCAAATTTTTTAAAGGAATTTATTAAAGAGATTTTTTACATAATACGCCTT
CAATAATCCCTTCCTTTTTATCAGAGCAATATCAGTGAAGGTAATTTTCTACCAAAAACGACTTC
AATAATCTACTCTAACTTTTTAAAGAAATTTATTAAAGGCATTTTTTTACATAATACGCCTTCAA
TAATCCCCTTAAATTTTAACAAAAAGAATTTTGAAAGCATTTTTGACTAAAAAGCCTTCAATAAT
ACTCTCTTCAAAAATTTTAAAAAAATTATTTAAGGTATTTTTT
Found at i:7866097 original size:115 final size:116
Alignment explanation
Indices: 7865953--7866182 Score: 390
Period size: 116 Copynumber: 2.0 Consensus size: 116
7865943 TAACAAAAAG
* *
7865953 AATTTTGAAGGCGTTTTTGACTAACAACGCCTTCAATAATATTCTTTTCAAAA-ATTTTAAAAAA
1 AATTTTGAAGGCCTTTTTGACTAACAACGCCTTCAATAATATTCTCTTCAAAATATTTTAAAAAA
*
7866017 ATTATTTGAGGTATTTTTTTATAAATTGCATTCAATAATCCTCCTAATATA
66 ATTATTTGAGGTATTTTTTTATAAACTGCATTCAATAATCCTCCTAATATA
* * *
7866068 AATTTTGAAGGCCTTTTTTACTAACAACGCCTTCAATAATCTTCTCTTCAAAATTTTTTAAAAAA
1 AATTTTGAAGGCCTTTTTGACTAACAACGCCTTCAATAATATTCTCTTCAAAATATTTTAAAAAA
*
7866133 ATTATTTGAGGTGTTTTTTTATAAACTGCATTCAATAATCCTCCTAATAT
66 ATTATTTGAGGTATTTTTTTATAAACTGCATTCAATAATCCTCCTAATAT
7866183 TTTTGTACAA
Statistics
Matches: 107, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
115 49 0.46
116 58 0.54
ACGTcount: A:0.35, C:0.15, G:0.08, T:0.42
Consensus pattern (116 bp):
AATTTTGAAGGCCTTTTTGACTAACAACGCCTTCAATAATATTCTCTTCAAAATATTTTAAAAAA
ATTATTTGAGGTATTTTTTTATAAACTGCATTCAATAATCCTCCTAATATA
Found at i:7866199 original size:61 final size:61
Alignment explanation
Indices: 7866099--7866280 Score: 199
Period size: 61 Copynumber: 2.9 Consensus size: 61
7866089 TAACAACGCC
* * * *
7866099 TTCAATAATCTTCTCTTCAAAATTTTT-TAAAAAAATTATTTG-AGGTGTTTTTTTATAAACTGC
1 TTCAATAATC-TC-C-TCAATATTTTTGT-ACAAAATTA-TTGAAGGTGTTTTTTTATAAAATAC
7866162 A
61 A
* *
7866163 TTCAATAATCCTCCT-AATATTTTTGTACAAAATTATTGAAGGTATTTTTTTATAAAATACC
1 TTCAATAAT-CTCCTCAATATTTTTGTACAAAATTATTGAAGGTGTTTTTTTATAAAATACA
* * * *
7866224 TTCAATAATTTTCTCAATATTTTTGTACAGAATTATTGAAGGTGTTTTTTTTTAAAA
1 TTCAATAATCTCCTCAATATTTTTGTACAAAATTATTGAAGGTGTTTTTTTATAAAA
7866281 AAAATACCTT
Statistics
Matches: 103, Mismatches: 11, Indels: 11
0.82 0.09 0.09
Matches are distributed among these distances:
60 6 0.06
61 82 0.80
62 2 0.02
63 1 0.01
64 11 0.11
65 1 0.01
ACGTcount: A:0.34, C:0.10, G:0.08, T:0.47
Consensus pattern (61 bp):
TTCAATAATCTCCTCAATATTTTTGTACAAAATTATTGAAGGTGTTTTTTTATAAAATACA
Found at i:7866823 original size:28 final size:29
Alignment explanation
Indices: 7866780--7866842 Score: 83
Period size: 28 Copynumber: 2.2 Consensus size: 29
7866770 GTTTGGTTTA
*
7866780 ATATTATGGTTTGCTGAATAGTATTATATG
1 ATATTAT-GTTTGCTGAATAGCATTATATG
* *
7866810 ATATTAT-TTTGCTGAATGGCATTGTATG
1 ATATTATGTTTGCTGAATAGCATTATATG
7866838 ATATT
1 ATATT
7866843 CGCTTACTGA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
28 23 0.77
30 7 0.23
ACGTcount: A:0.29, C:0.05, G:0.19, T:0.48
Consensus pattern (29 bp):
ATATTATGTTTGCTGAATAGCATTATATG
Found at i:7866901 original size:25 final size:25
Alignment explanation
Indices: 7866864--7866943 Score: 99
Period size: 25 Copynumber: 3.2 Consensus size: 25
7866854 TAGTTTGCTA
*
7866864 AATGGTTTACTGAATGGTGTTTCTG
1 AATGGTTTGCTGAATGGTGTTTCTG
7866889 AATGGTTTGCTGAATGGTGTTTCTG
1 AATGGTTTGCTGAATGGTGTTTCTG
*** * *
7866914 AATACATTGCTGATTGGT-TTGCTG
1 AATGGTTTGCTGAATGGTGTTTCTG
7866938 AATGGT
1 AATGGT
7866944 GTTTTTGTAC
Statistics
Matches: 46, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
24 8 0.17
25 38 0.83
ACGTcount: A:0.20, C:0.09, G:0.29, T:0.42
Consensus pattern (25 bp):
AATGGTTTGCTGAATGGTGTTTCTG
Found at i:7866935 original size:12 final size:12
Alignment explanation
Indices: 7866849--7866943 Score: 91
Period size: 12 Copynumber: 7.8 Consensus size: 12
7866839 TATTCGCTTA
*
7866849 CTGAATAGTTTG
1 CTGAATGGTTTG
* *
7866861 CTAAATGGTTTA
1 CTGAATGGTTTG
*
7866873 CTGAATGGTGTTT
1 CTGAATGGT-TTG
7866886 CTGAATGGTTTG
1 CTGAATGGTTTG
*
7866898 CTGAATGGTGTTT
1 CTGAATGGT-TTG
***
7866911 CTGAATACATTG
1 CTGAATGGTTTG
*
7866923 CTGATTGGTTTG
1 CTGAATGGTTTG
7866935 CTGAATGGT
1 CTGAATGGT
7866944 GTTTTTGTAC
Statistics
Matches: 65, Mismatches: 16, Indels: 4
0.76 0.19 0.05
Matches are distributed among these distances:
12 46 0.71
13 19 0.29
ACGTcount: A:0.21, C:0.09, G:0.27, T:0.42
Consensus pattern (12 bp):
CTGAATGGTTTG
Found at i:7866983 original size:31 final size:31
Alignment explanation
Indices: 7866948--7867011 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
7866938 AATGGTGTTT
7866948 TTGTACATAGTATATTATTGGTTGTATTTTA
1 TTGTACATAGTATATTATTGGTTGTATTTTA
*
7866979 TTGTACATAGTATGTTATTGGTTGTATTTTA
1 TTGTACATAGTATATTATTGGTTGTATTTTA
7867010 TT
1 TT
7867012 ACATATAGTG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.23, C:0.03, G:0.17, T:0.56
Consensus pattern (31 bp):
TTGTACATAGTATATTATTGGTTGTATTTTA
Found at i:7867020 original size:31 final size:31
Alignment explanation
Indices: 7866952--7867020 Score: 102
Period size: 31 Copynumber: 2.2 Consensus size: 31
7866942 GTGTTTTTGT
**
7866952 ACATAGTATATTATTGGTTGTATTTTATTGT
1 ACATAGTATATTATTGGTTGTATTTTATTAC
*
7866983 ACATAGTATGTTATTGGTTGTATTTTATTAC
1 ACATAGTATATTATTGGTTGTATTTTATTAC
*
7867014 ATATAGT
1 ACATAGT
7867021 GTTAAATTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.28, C:0.04, G:0.16, T:0.52
Consensus pattern (31 bp):
ACATAGTATATTATTGGTTGTATTTTATTAC
Found at i:7870590 original size:12 final size:12
Alignment explanation
Indices: 7870573--7870597 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7870563 ATTAAAAGTG
7870573 TATATATCAAAA
1 TATATATCAAAA
7870585 TATATATCAAAA
1 TATATATCAAAA
7870597 T
1 T
7870598 TTACTAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.56, C:0.08, G:0.00, T:0.36
Consensus pattern (12 bp):
TATATATCAAAA
Found at i:7874019 original size:245 final size:245
Alignment explanation
Indices: 7873589--7874075 Score: 965
Period size: 245 Copynumber: 2.0 Consensus size: 245
7873579 ATAACATTAC
7873589 ATTAATGAGCAAATATTACTTTTTAAAATAGATATAAGAATTAATATTTTTTAAAAATTTACTCA
1 ATTAATGAGCAAATATTACTTTTTAAAATAGATATAAGAATTAATATTTTTTAAAAATTTACTCA
7873654 TTAATGAACTAATATTATCTTATTTACTTTATTAATAAAATGATATAATCTAATTCATTAATAAT
66 TTAATGAACTAATATTATCTTATTTACTTTATTAATAAAATGATATAATCTAATTCATTAATAAT
7873719 ATATAAAATTTATATATTGATAAAACATTAAATATAAACTCAACATTTTATGCCATTAAAGTTTG
131 ATATAAAATTTATATATTGATAAAACATTAAATATAAACTCAACATTTTATGCCATTAAAGTTTG
*
7873784 AAGCCACAAAATTAATGATTTTTTTATTTTTTAAGAATAAAAATTTTTTT
196 AAACCACAAAATTAATGATTTTTTTATTTTTTAAGAATAAAAATTTTTTT
7873834 ATTAATGAGCAAATATTACTTTTTAAAATAGATATAAGAATTAATATTTTTTAAAAATTTACTCA
1 ATTAATGAGCAAATATTACTTTTTAAAATAGATATAAGAATTAATATTTTTTAAAAATTTACTCA
7873899 TTAATGAACTAATATTATCTTATTTACTTTATTAATAAAATGATATAATCTAATTCATTAATAAT
66 TTAATGAACTAATATTATCTTATTTACTTTATTAATAAAATGATATAATCTAATTCATTAATAAT
7873964 ATATAAAATTTATATATTGATAAAACATTAAATATAAACTCAACATTTTATGCCATTAAAGTTTG
131 ATATAAAATTTATATATTGATAAAACATTAAATATAAACTCAACATTTTATGCCATTAAAGTTTG
7874029 AAACCACAAAATTAATGATTTTTTTATTTTTTAAGAATAAAAATTTT
196 AAACCACAAAATTAATGATTTTTTTATTTTTTAAGAATAAAAATTTT
7874076 CTTTTTTTTA
Statistics
Matches: 241, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
245 241 1.00
ACGTcount: A:0.45, C:0.07, G:0.05, T:0.43
Consensus pattern (245 bp):
ATTAATGAGCAAATATTACTTTTTAAAATAGATATAAGAATTAATATTTTTTAAAAATTTACTCA
TTAATGAACTAATATTATCTTATTTACTTTATTAATAAAATGATATAATCTAATTCATTAATAAT
ATATAAAATTTATATATTGATAAAACATTAAATATAAACTCAACATTTTATGCCATTAAAGTTTG
AAACCACAAAATTAATGATTTTTTTATTTTTTAAGAATAAAAATTTTTTT
Found at i:7885804 original size:1 final size:1
Alignment explanation
Indices: 7885798--7885830 Score: 66
Period size: 1 Copynumber: 33.0 Consensus size: 1
7885788 TTTCAATTAT
7885798 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
7885831 CGAACTTTTC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 32 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:7893083 original size:2 final size:2
Alignment explanation
Indices: 7893076--7893117 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
7893066 GTCACTGTTG
7893076 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
7893118 ATATATATAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:7893122 original size:2 final size:2
Alignment explanation
Indices: 7893117--7893143 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
7893107 TCTCTCTCTC
7893117 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
7893144 TCATACTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7906647 original size:20 final size:21
Alignment explanation
Indices: 7906622--7906662 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
7906612 TCCTTTCTCG
*
7906622 CATAAA-TCCAAGGCTTCGTT
1 CATAAACTCCAACGCTTCGTT
*
7906642 CATAAACTTCAACGCTTCGTT
1 CATAAACTCCAACGCTTCGTT
7906663 GAAGATACCG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.29, C:0.27, G:0.12, T:0.32
Consensus pattern (21 bp):
CATAAACTCCAACGCTTCGTT
Found at i:7907662 original size:6 final size:6
Alignment explanation
Indices: 7907649--7907680 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
7907639 TTATGTTAAT
7907649 TTTA-A TTTATA TTTATA TTTATA TTTATA TTT
1 TTTATA TTTATA TTTATA TTTATA TTTATA TTT
7907681 CAATTACTCG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 4 0.15
6 22 0.85
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (6 bp):
TTTATA
Found at i:7908020 original size:12 final size:12
Alignment explanation
Indices: 7908003--7908052 Score: 55
Period size: 12 Copynumber: 3.9 Consensus size: 12
7907993 AATTTTTTTA
7908003 AATAATTAAAAT
1 AATAATTAAAAT
7908015 AATAATTAAAAT
1 AATAATTAAAAT
* *
7908027 AAAAAGTTTAAATT
1 AATAA--TTAAAAT
7908041 AATAAATTAAAA
1 AAT-AATTAAAA
7908053 AAATGTTGCG
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
12 16 0.52
13 5 0.16
14 8 0.26
15 2 0.06
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (12 bp):
AATAATTAAAAT
Found at i:7908245 original size:34 final size:34
Alignment explanation
Indices: 7908206--7908274 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
7908196 ATATTATTAA
*
7908206 TTTTCTCATTAAATTTTATTAATTTATTTTTTAT
1 TTTTCTCATTAAATTTTATCAATTTATTTTTTAT
7908240 TTTTCTCATTAAATTTTATCAATTTATTTTTTAT
1 TTTTCTCATTAAATTTTATCAATTTATTTTTTAT
7908274 T
1 T
7908275 GAACTCTATC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.26, C:0.07, G:0.00, T:0.67
Consensus pattern (34 bp):
TTTTCTCATTAAATTTTATCAATTTATTTTTTAT
Found at i:7908270 original size:33 final size:33
Alignment explanation
Indices: 7908197--7908270 Score: 112
Period size: 34 Copynumber: 2.2 Consensus size: 33
7908187 ATTTTTTACA
* *
7908197 TATTATTAATTTTCTCATTAAATTTTATTAATT
1 TATTTTTAATTTTCTCATTAAATTTTATCAATT
*
7908230 TATTTTTTATTTTTCTCATTAAATTTTATCAATT
1 TA-TTTTTAATTTTCTCATTAAATTTTATCAATT
7908264 TATTTTT
1 TATTTTT
7908271 TATTGAACTC
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
33 7 0.19
34 30 0.81
ACGTcount: A:0.28, C:0.07, G:0.00, T:0.65
Consensus pattern (33 bp):
TATTTTTAATTTTCTCATTAAATTTTATCAATT
Found at i:7915122 original size:18 final size:19
Alignment explanation
Indices: 7915101--7915158 Score: 59
Period size: 20 Copynumber: 3.2 Consensus size: 19
7915091 ATATATTATT
*
7915101 TTTTATTATTTTATTTA-A
1 TTTTATTATTTTATATATA
7915119 TTTTA-TA-TTTATATATA
1 TTTTATTATTTTATATATA
* *
7915136 TTTTATAATTTTTATATTTA
1 TTTTATTA-TTTTATATATA
7915156 TTT
1 TTT
7915159 AATGTTATAT
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
16 7 0.21
17 8 0.24
18 6 0.18
20 12 0.36
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (19 bp):
TTTTATTATTTTATATATA
Found at i:7915144 original size:25 final size:25
Alignment explanation
Indices: 7915107--7915178 Score: 85
Period size: 26 Copynumber: 2.8 Consensus size: 25
7915097 TATTTTTTAT
7915107 TATTTTATTTAATTTTATATTTATATA
1 TATTTTA--TAATTTTATATTTATATA
*
7915134 TATTTTATAATTTTTATATTTATTTA
1 TATTTTATAA-TTTTATATTTATATA
*
7915160 -ATGTTAT-ATTTTATATTTA
1 TATTTTATAATTTTATATTTA
7915179 AAAAATAATA
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
23 11 0.26
24 1 0.02
25 9 0.21
26 14 0.33
27 7 0.17
ACGTcount: A:0.32, C:0.00, G:0.01, T:0.67
Consensus pattern (25 bp):
TATTTTATAATTTTATATTTATATA
Found at i:7915156 original size:42 final size:41
Alignment explanation
Indices: 7915088--7915175 Score: 117
Period size: 42 Copynumber: 2.1 Consensus size: 41
7915078 TTCCATTTGG
*
7915088 TATATATATTATTTTTTATTATTTTATTTAATTTTATATTT
1 TATATATATTATTTTTTATTATTTTATTTAATGTTATATTT
*
7915129 ATATATATTTTATAATTTTTA-TA-TTTATTTAATGTTATATTT
1 -TATATATATTAT--TTTTTATTATTTTATTTAATGTTATATTT
7915171 TATAT
1 TATAT
7915176 TTAAAAAATA
Statistics
Matches: 42, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
41 5 0.12
42 29 0.69
43 2 0.05
44 6 0.14
ACGTcount: A:0.32, C:0.00, G:0.01, T:0.67
Consensus pattern (41 bp):
TATATATATTATTTTTTATTATTTTATTTAATGTTATATTT
Found at i:7915187 original size:43 final size:42
Alignment explanation
Indices: 7915100--7915197 Score: 106
Period size: 43 Copynumber: 2.2 Consensus size: 42
7915090 TATATATTAT
* ****
7915100 TTTTTATTATTTTATTTAATTTTATATTTATATATATTTTATAA
1 TTTTTA-TA-TTTATTTAATGTTATATTTATATATAAAAAATAA
*
7915144 TTTTTATATTTATTTAATGTTATATTTTATATTTAAAAAATAA
1 TTTTTATATTTATTTAATGTTATA-TTTATATATAAAAAATAA
7915187 TATTTTATATT
1 T-TTTTATATT
7915198 AAAATTTTAA
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
42 15 0.33
43 16 0.35
44 15 0.33
ACGTcount: A:0.35, C:0.00, G:0.01, T:0.64
Consensus pattern (42 bp):
TTTTTATATTTATTTAATGTTATATTTATATATAAAAAATAA
Found at i:7915191 original size:21 final size:21
Alignment explanation
Indices: 7915165--7915215 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 21
7915155 ATTTAATGTT
7915165 ATATTTTATATTTAAAA-AATA
1 ATATTTTATA-TTAAAATAATA
**
7915186 ATATTTTATATTAAAATTTTA
1 ATATTTTATATTAAAATAATA
7915207 ATATTTTAT
1 ATATTTTAT
7915216 TAATTTCAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
20 6 0.22
21 21 0.78
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (21 bp):
ATATTTTATATTAAAATAATA
Found at i:7918286 original size:163 final size:164
Alignment explanation
Indices: 7917994--7918333 Score: 628
Period size: 164 Copynumber: 2.1 Consensus size: 164
7917984 ATTATTAATT
*
7917994 AAAAAAAATTATTTGCCAATAAAATAAAGTTGTTTCCTTTCTTAATTTCAATAATTTATATTGCT
1 AAAAAAAATTA-CTGCCAATAAAATAAAGTTGTTTCCTTTCTTAATTTCAATAATTTATATTGCT
7918059 ATTCCATTTGGACACTCACAATTAAAAAAAAAAATTACATAGTTTGAAGACAAAAAATTTAAGTG
65 ATTCCATTTGGACACTCACAATTAAAAAAAAAAATTACATAGTTTGAAGACAAAAAATTTAAGTG
7918124 TTAAAAGTTTAAATTTAATAGATATTATTTTTTTA
130 TTAAAAGTTTAAATTTAATAGATATTATTTTTTTA
7918159 AAAAAAAATTACTGCCAATAAAATAAAGTTGTTTCCTTTCTTAATTTCAATAATTTATATTGCTA
1 AAAAAAAATTACTGCCAATAAAATAAAGTTGTTTCCTTTCTTAATTTCAATAATTTATATTGCTA
* *
7918224 TTCCATTTGGACACTCACAATTTAAAAAAAAAA-TGCATAGTTTGAAGACAAAAAATTTAAGTGT
66 TTCCATTTGGACACTCACAATTAAAAAAAAAAATTACATAGTTTGAAGACAAAAAATTTAAGTGT
7918288 TAAAAGTTTAAATTTAATAGATATTATTTTTTTA
131 TAAAAGTTTAAATTTAATAGATATTATTTTTTTA
*
7918322 AAAAATAATTAC
1 AAAAAAAATTAC
7918334 ATTAATAAAC
Statistics
Matches: 171, Mismatches: 4, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
163 75 0.44
164 85 0.50
165 11 0.06
ACGTcount: A:0.44, C:0.09, G:0.08, T:0.39
Consensus pattern (164 bp):
AAAAAAAATTACTGCCAATAAAATAAAGTTGTTTCCTTTCTTAATTTCAATAATTTATATTGCTA
TTCCATTTGGACACTCACAATTAAAAAAAAAAATTACATAGTTTGAAGACAAAAAATTTAAGTGT
TAAAAGTTTAAATTTAATAGATATTATTTTTTTA
Found at i:7928876 original size:21 final size:21
Alignment explanation
Indices: 7928834--7928876 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
7928824 TATTAAAAAA
* *
7928834 TAATATTTTATATTTTATAAG
1 TAATATTTTATAATTTACAAG
7928855 TAATATTTTATTAATTT-CAAG
1 TAATATTTTA-TAATTTACAAG
7928876 T
1 T
7928877 CAAATCGAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.37, C:0.02, G:0.05, T:0.56
Consensus pattern (21 bp):
TAATATTTTATAATTTACAAG
Found at i:7931710 original size:14 final size:15
Alignment explanation
Indices: 7931681--7931713 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
7931671 TCAAAATACT
7931681 TTTTAAAAATTTTTA
1 TTTTAAAAATTTTTA
*
7931696 TTTTAGAAA-TTTTA
1 TTTTAAAAATTTTTA
7931710 TTTT
1 TTTT
7931714 CAAGAAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 9 0.53
15 8 0.47
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (15 bp):
TTTTAAAAATTTTTA
Found at i:7931731 original size:72 final size:72
Alignment explanation
Indices: 7931633--7931772 Score: 192
Period size: 72 Copynumber: 1.9 Consensus size: 72
7931623 TAATTTTTTT
* *
7931633 ATTTTAATTTAAAAAAAATTGATACTTTCGACTTTTC-CTCAAAATACTTTTTAAAAATTTTTAT
1 ATTTTAATTTAAAAAAAATTGATACTTTCAACTTTTCTCTAAAAATACTTTTTAAAAATTTTTAT
7931697 TTTAGAA
66 TTTAGAA
* * * * **
7931704 ATTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCTCTAAAAATATTTTTTATACCTTTTTA
1 ATTTTAATTT-AAAAAAAATTGATACTTTCAACTTTTCTCTAAAAATACTTTTTAAAAATTTTTA
7931769 TTTT
65 TTTT
7931773 CAAGGGAAAT
Statistics
Matches: 59, Mismatches: 8, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
71 9 0.15
72 25 0.42
73 25 0.42
ACGTcount: A:0.36, C:0.11, G:0.04, T:0.50
Consensus pattern (72 bp):
ATTTTAATTTAAAAAAAATTGATACTTTCAACTTTTCTCTAAAAATACTTTTTAAAAATTTTTAT
TTTAGAA
Found at i:7931770 original size:59 final size:56
Alignment explanation
Indices: 7931705--7931933 Score: 246
Period size: 59 Copynumber: 3.9 Consensus size: 56
7931695 ATTTTAGAAA
7931705 TTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCTCTAAAAATATTTTTTATACCT
1 TTTTATTTTCAA-AAAAATTGATACTTTCAACTTTTCTCTAAAAATATTTTTTATA--T
** * * *
7931764 TTTTATTTTCAAGGGAAATTGATACTTTCAACTTTTTTCCAAAAACATATTTTTTTTTAT
1 TTTTATTTTCAA-AAAAATTGATACTTTCAACTTTTCT-CTAAAA-ATA-TTTTTTATAT
* * * * * *
7931824 TTTTGTGTTCAAAGAAAATTGATACATTCAACTTTCCT-TCAAAAATATTTTTTAAAA
1 TTTTATTTTCAAA-AAAATTGATACTTTCAACTTTTCTCT-AAAAATATTTTTTATAT
7931881 TTTTATTTTCAAAAAAATTGATACTTTCAACTTTTC-CTTAAAAATATATTTTT
1 TTTTATTTTCAAAAAAATTGATACTTTCAACTTTTCTC-TAAAAATAT-TTTTT
7931934 TAAAAATTTT
Statistics
Matches: 142, Mismatches: 20, Indels: 18
0.79 0.11 0.10
Matches are distributed among these distances:
56 29 0.20
57 24 0.17
58 3 0.02
59 39 0.27
60 36 0.25
61 3 0.02
62 8 0.06
ACGTcount: A:0.34, C:0.12, G:0.05, T:0.48
Consensus pattern (56 bp):
TTTTATTTTCAAAAAAATTGATACTTTCAACTTTTCTCTAAAAATATTTTTTATAT
Found at i:7931785 original size:185 final size:189
Alignment explanation
Indices: 7931525--7931889 Score: 455
Period size: 185 Copynumber: 1.9 Consensus size: 189
7931515 TCATTACTTT
* * * * *
7931525 TTTTCAAGGAAAATTGATACTTTCAACTTTTCTTTAAAATGTTTTTCTTGATATTTTTTATTTTT
1 TTTTCAAGAAAAATTGATACTTTCAACTTTTCTTAAAAATGATTTTCTTGATACTTTTTATTTTC
7931590 AAGAAAATTGACACTTTCAA-TTTTTTCTC-AAA-ATA-ATTTTTTTATTTTAAT-TT-AAAAAA
66 AAGAAAATTGACACTTTCAACTTTTTTC-CAAAACATATATTTTTTTATTTTAATGTTCAAAAAA
* *
7931649 AATTGATACTTTCGACTTTTCC-TC-AAAATACTTTTTAAAAATTTTTATTTTAGAAATTTTA
130 AATTGATACATTCAAC-TTTCCTTCAAAAATA-TTTTTAAAAA-TTTTATTTTAGAAATTTTA
7931710 TTTTCAAGAAAAATTGATACTTTCAACTTTTCTCTAAAAAT-ATTTT-TT-ATACCTTTTTATTT
1 TTTTCAAGAAAAATTGATACTTTCAACTTTTCT-TAAAAATGATTTTCTTGATA-CTTTTTATTT
* * * **
7931772 TCAAGGGAAATTGATACTTTCAACTTTTTTCCAAAAACATATTTTTTTTTATTTTTGTGTTCAAA
64 TCAA-GAAAATTGACACTTTCAACTTTTTTCC-AAAACATATATTTTTTTATTTTAATGTTCAAA
* *
7931837 GAAAATTGATACATTCAACTTTCCTTCAAAAATATTTTTTAAAATTTTATTTT
127 AAAAATTGATACATTCAACTTTCCTTCAAAAATATTTTTAAAAATTTTATTTT
7931890 CAAAAAAATT
Statistics
Matches: 154, Mismatches: 14, Indels: 19
0.82 0.07 0.10
Matches are distributed among these distances:
183 3 0.02
184 14 0.09
185 53 0.34
186 13 0.08
187 3 0.02
188 3 0.02
189 13 0.08
190 16 0.10
191 30 0.19
192 6 0.04
ACGTcount: A:0.34, C:0.11, G:0.05, T:0.50
Consensus pattern (189 bp):
TTTTCAAGAAAAATTGATACTTTCAACTTTTCTTAAAAATGATTTTCTTGATACTTTTTATTTTC
AAGAAAATTGACACTTTCAACTTTTTTCCAAAACATATATTTTTTTATTTTAATGTTCAAAAAAA
ATTGATACATTCAACTTTCCTTCAAAAATATTTTTAAAAATTTTATTTTAGAAATTTTA
Found at i:7933008 original size:44 final size:44
Alignment explanation
Indices: 7932940--7933296 Score: 297
Period size: 44 Copynumber: 8.2 Consensus size: 44
7932930 TTTTAGAGTG
* * *
7932940 AACAAAACTCCTATAAACAGATGCTCAACAACTTTGAAAAAATA
1 AACAAAGCTCCTCTAAACAGAGGCTCAACAACTTTGAAAAAATA
* * * *
7932984 AACAAAGCTCCTCTAATCAAATGCTCAATC-ACTTT-TAAAAAT-
1 AACAAAGCTCCTCTAAACAGAGGCTCAA-CAACTTTGAAAAAATA
** * *
7933026 AA-ATTGCTCCTTTAAACAGAGG--CAACCAATTTTGGAAAAAATA
1 AACAAAGCTCCTCTAAACAGAGGCTCAA-CAACTTT-GAAAAAATA
** * * * *
7933069 AA-TTA-TTCCTCTAAACAGAGGCACCACAACTTTTTTAAAAAATA
1 AACAAAGCTCCTCTAAACAGAGGCTCAACAAC--TTTGAAAAAATA
** * **
7933113 AA-TTA-CTCCTCTAAACAAAGGCTCAATGACTTTGAAAAAATA
1 AACAAAGCTCCTCTAAACAGAGGCTCAACAACTTTGAAAAAATA
* *
7933155 AACAAGGCTCCTCTAATCAGAGGCTCAACAACTTTGAAAAAATA
1 AACAAAGCTCCTCTAAACAGAGGCTCAACAACTTTGAAAAAATA
*
7933199 AACAAAGCTCCTCTAATCAGAGGCTCAACAACTTTTG-AAAAATA
1 AACAAAGCTCCTCTAAACAGAGGCTCAACAAC-TTTGAAAAAATA
* ** * *
7933243 AACAAGGCTTATCTAATCAGAAGCTCAACAACTTTTG-AAAAATA
1 AACAAAGCTCCTCTAAACAGAGGCTCAACAAC-TTTGAAAAAATA
7933287 AACAAAGCTC
1 AACAAAGCTC
7933297 TTTGACAATC
Statistics
Matches: 259, Mismatches: 42, Indels: 24
0.80 0.13 0.07
Matches are distributed among these distances:
39 4 0.02
40 4 0.02
41 14 0.05
42 35 0.14
43 12 0.05
44 182 0.70
45 8 0.03
ACGTcount: A:0.45, C:0.21, G:0.10, T:0.24
Consensus pattern (44 bp):
AACAAAGCTCCTCTAAACAGAGGCTCAACAACTTTGAAAAAATA
Found at i:7933210 original size:88 final size:89
Alignment explanation
Indices: 7932940--7933296 Score: 337
Period size: 88 Copynumber: 4.1 Consensus size: 89
7932930 TTTTAGAGTG
* * * * *
7932940 AACAAAACTCCTATAAACAGATGCTCAACAACTTTGAAAAAATAAACAAAGCTCCTCTAATCAAA
1 AACAAAGCTCCTCTAAACAGAGGCTCAACAACTTTGAAAAAATAAACAAGGCTCCTCTAATCAGA
*
7933005 TGCTCAATC-ACTTTT--AAAAAT-
66 GGCTCAA-CAACTTTTGAAAAAATA
** * * ** * *
7933026 AA-ATTGCTCCTTTAAACAGAGG--CAACCAATTTTGGAAAAAATAAATTA--TTCCTCTAAACA
1 AACAAAGCTCCTCTAAACAGAGGCTCAA-CAACTTT-GAAAAAATAAACAAGGCTCCTCTAATCA
* * *
7933086 GAGGCACCACAACTTTTTTAAAAAATA
64 GAGGCTCAACAAC-TTTTGAAAAAATA
** * **
7933113 AA-TTA-CTCCTCTAAACAAAGGCTCAATGACTTTGAAAAAATAAACAAGGCTCCTCTAATCAGA
1 AACAAAGCTCCTCTAAACAGAGGCTCAACAACTTTGAAAAAATAAACAAGGCTCCTCTAATCAGA
7933176 GGCTCAACAAC-TTTGAAAAAATA
66 GGCTCAACAACTTTTGAAAAAATA
* **
7933199 AACAAAGCTCCTCTAATCAGAGGCTCAACAACTTTTG-AAAAATAAACAAGGCTTATCTAATCAG
1 AACAAAGCTCCTCTAAACAGAGGCTCAACAAC-TTTGAAAAAATAAACAAGGCTCCTCTAATCAG
*
7933263 AAGCTCAACAACTTTTG-AAAAATA
65 AGGCTCAACAACTTTTGAAAAAATA
7933287 AACAAAGCTC
1 AACAAAGCTC
7933297 TTTGACAATC
Statistics
Matches: 219, Mismatches: 37, Indels: 28
0.77 0.13 0.10
Matches are distributed among these distances:
82 1 0.00
83 20 0.09
84 10 0.05
85 27 0.12
86 47 0.21
87 8 0.04
88 98 0.45
89 8 0.04
ACGTcount: A:0.45, C:0.21, G:0.10, T:0.24
Consensus pattern (89 bp):
AACAAAGCTCCTCTAAACAGAGGCTCAACAACTTTGAAAAAATAAACAAGGCTCCTCTAATCAGA
GGCTCAACAACTTTTGAAAAAATA
Found at i:7938516 original size:4 final size:4
Alignment explanation
Indices: 7938507--7938538 Score: 55
Period size: 4 Copynumber: 8.0 Consensus size: 4
7938497 CATCAAATAA
*
7938507 AAAT AAAT AAAT AAAT AAAT AACT AAAT AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT
7938539 TAAAACGTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.72, C:0.03, G:0.00, T:0.25
Consensus pattern (4 bp):
AAAT
Found at i:7939678 original size:60 final size:56
Alignment explanation
Indices: 7939587--7939811 Score: 208
Period size: 59 Copynumber: 3.9 Consensus size: 56
7939577 TACTTTCAAT
** *
7939587 TTTTTCTTAAAATATGTTTTTGATATTTTTTATTTTTAAAGAAAATTTGTACTTCTAAC
1 TTTTTCTTAAAATAT-TTTTTTTTAATTTTTA-TTTTAAAGAAAA-TTGTACTTCTAAC
* * *
7939646 TTTTTCTTAAAATATTTTTTTTCTAAAATTTTAATTTCAAGAAAAATTGATACTT-TCAAC
1 TTTTTCTTAAAATATTTTTTTT-T-AATTTTTATTTTAAAG-AAAATTG-TACTTCT-AAC
* * * *
7939706 -TTTTCTTCAAAATACTTTTTTTTAATTTTTATTTTAAA-AAAATGGTACTTCCAAT
1 TTTTTCTT-AAAATATTTTTTTTTAATTTTTATTTTAAAGAAAATTGTACTTCTAAC
* *
7939761 TTTTTCTCAAAATA-TTTTTTTTAATTTTAATTTT-AAGAAAAATTGATACTT
1 TTTTTCTTAAAATATTTTTTTTTAATTTTTATTTTAAAG-AAAATTG-TACTT
7939812 TCGATTTTTC
Statistics
Matches: 139, Mismatches: 16, Indels: 25
0.77 0.09 0.14
Matches are distributed among these distances:
53 2 0.01
54 19 0.14
55 19 0.14
56 17 0.12
58 17 0.12
59 34 0.24
60 31 0.22
ACGTcount: A:0.34, C:0.08, G:0.04, T:0.53
Consensus pattern (56 bp):
TTTTTCTTAAAATATTTTTTTTTAATTTTTATTTTAAAGAAAATTGTACTTCTAAC
Found at i:7939804 original size:111 final size:116
Alignment explanation
Indices: 7939564--7939852 Score: 358
Period size: 111 Copynumber: 2.5 Consensus size: 116
7939554 TGCTTTTTTA
* *
7939564 CAAGAAAAATTAATACTTTCAATTTTTTCTT-AAAATA-TGTTTTTGATATTTTTTATTTTTAAA
1 CAAGAAAAATTGATACTTTCAA-TTTTTCTTCAAAATACT-TTTTT-ATAATTTTTA-TTTTAAA
* * *
7939627 GAAAATTTGTACTTCTAACTTTTTCTTAAAATATTTTTTTTCTAAAATTTTAATTT
62 GAAAATTGGTACTTCCAACTTTTTCTCAAAATATTTTTTTTCT-AAATTTTAATTT
* *
7939683 CAAGAAAAATTGATACTTTCAACTTTTCTTCAAAATACTTTTTTTTAATTTTTATTTTAAA-AAA
1 CAAGAAAAATTGATACTTTCAATTTTTCTTCAAAATACTTTTTTATAATTTTTATTTTAAAGAAA
*
7939747 A-TGGTACTTCCAATTTTTTCTCAAAATA-TTTTTTT-T-AATTTTAATTT
66 ATTGGTACTTCCAACTTTTTCTCAAAATATTTTTTTTCTAAATTTTAATTT
* * * * * *
7939794 TAAGAAAAATTGATACTTTCGATTTTTCCTCAAAATACCTTTTGAAAATTTTTATTTTA
1 CAAGAAAAATTGATACTTTCAATTTTTCTTCAAAATACTTTTTTATAATTTTTATTTTA
7939853 GAAATTTTAT
Statistics
Matches: 152, Mismatches: 16, Indels: 12
0.84 0.09 0.07
Matches are distributed among these distances:
111 62 0.41
113 1 0.01
114 7 0.05
115 23 0.15
116 4 0.03
117 7 0.05
118 15 0.10
119 32 0.21
120 1 0.01
ACGTcount: A:0.35, C:0.10, G:0.04, T:0.51
Consensus pattern (116 bp):
CAAGAAAAATTGATACTTTCAATTTTTCTTCAAAATACTTTTTTATAATTTTTATTTTAAAGAAA
ATTGGTACTTCCAACTTTTTCTCAAAATATTTTTTTTCTAAATTTTAATTT
Found at i:7939856 original size:56 final size:56
Alignment explanation
Indices: 7939566--7939856 Score: 207
Period size: 56 Copynumber: 5.1 Consensus size: 56
7939556 CTTTTTTACA
* * * ** *
7939566 AGAAAAATTAATACTTTCAATTTTTTCTTAAAATA-TGTTTTTGATATTTTTTATTTTT
1 AGAAAAATTGATACTTTCAATTTTTCCTCAAAATACT-TTTTT-A-AAATTTTAATTTT
* * * *
7939624 AAAGAAAATTTG-TAC-TTCTAACTTTTT-CTTAAAATATTTTTTTTCTAAAATTTTAATTTCA
1 --AGAAAAATTGATACTTTC-AA-TTTTTCCTCAAAATA--CTTTTT-TAAAATTTTAATTT-T
* * ** *
7939685 AGAAAAATTGATACTTTCAACTTTTCTTCAAAATACTTTTTTTTAATTTTTATTTT
1 AGAAAAATTGATACTTTCAATTTTTCCTCAAAATACTTTTTTAAAATTTTAATTTT
* * * * **
7939741 A-AAAAAATGGTACTTCCAATTTTTTCTCAAAATA-TTTTTTTTAATTTTAATTTT
1 AGAAAAATTGATACTTTCAATTTTTCCTCAAAATACTTTTTTAAAATTTTAATTTT
* * * *
7939795 AAGAAAAATTGATACTTTCGATTTTTCCTCAAAATACCTTTTGAAAATTTTTATTTT
1 -AGAAAAATTGATACTTTCAATTTTTCCTCAAAATACTTTTTTAAAATTTTAATTTT
7939852 AGAAA
1 AGAAA
7939857 TTTTATTTTC
Statistics
Matches: 186, Mismatches: 32, Indels: 30
0.75 0.13 0.12
Matches are distributed among these distances:
54 19 0.10
55 28 0.15
56 34 0.18
57 26 0.14
58 8 0.04
59 27 0.15
60 34 0.18
61 8 0.04
62 2 0.01
ACGTcount: A:0.35, C:0.09, G:0.05, T:0.51
Consensus pattern (56 bp):
AGAAAAATTGATACTTTCAATTTTTCCTCAAAATACTTTTTTAAAATTTTAATTTT
Found at i:7939951 original size:61 final size:62
Alignment explanation
Indices: 7939857--7940032 Score: 159
Period size: 60 Copynumber: 2.9 Consensus size: 62
7939847 ATTTTAGAAA
* * *
7939857 TTTTATTTTCAAGAAAAATTGATACTTTCAAC-TTTTCCCTAAAA-ATATTTTTTTATACCT
1 TTTTATTTTAAAAAAAAATTGATACTTTCAACTTTTTCCCAAAAACATATTTTTTTATACCT
* **
7939917 TTTTATTTTTAAAAAAAAATTGATAC-TTCTAACTTTTTTCCAAAAACATATTTTTTT-T-CAA
1 TTTTA-TTTTAAAAAAAAATTGATACTTTC-AACTTTTTCCCAAAAACATATTTTTTTATACCT
* * * * * *
7939978 TTTTCTATTCAAAGAAAATTGATACATTT-AAC-TTTTCTTCAAAAATATATTTTTT
1 TTTTATTTTAAAAAAAAATTGATAC-TTTCAACTTTTTC-CCAAAAACATATTTTTT
7940033 GAAAATTTTA
Statistics
Matches: 96, Mismatches: 13, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
59 4 0.04
60 43 0.45
61 26 0.27
62 13 0.14
63 10 0.10
ACGTcount: A:0.36, C:0.12, G:0.03, T:0.49
Consensus pattern (62 bp):
TTTTATTTTAAAAAAAAATTGATACTTTCAACTTTTTCCCAAAAACATATTTTTTTATACCT
Found at i:7940078 original size:6 final size:6
Alignment explanation
Indices: 7940058--7940089 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
7940048 GGAAAATAAA
7940058 AAAATT -AAATT -AAATT AAAATT AAAATT AAAA
1 AAAATT AAAATT AAAATT AAAATT AAAATT AAAA
7940090 AATTAGGGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 10 0.40
6 15 0.60
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (6 bp):
AAAATT
Found at i:7940148 original size:4 final size:4
Alignment explanation
Indices: 7940131--7940160 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
7940121 AAATAATAAT
*
7940131 AATA AATA AGTA AATA AATA AATA AATA AA
1 AATA AATA AATA AATA AATA AATA AATA AA
7940161 AACCCATGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.23
Consensus pattern (4 bp):
AATA
Found at i:7941881 original size:14 final size:15
Alignment explanation
Indices: 7941846--7941883 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
7941836 ACATAAAGAA
*
7941846 ATATTTTAAAAGTAT
1 ATATTTTATAAGTAT
7941861 ATATTTTATAA-TAT
1 ATATTTTATAAGTAT
*
7941875 TTATTTTAT
1 ATATTTTAT
7941884 TATTAATTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 11 0.52
15 10 0.48
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (15 bp):
ATATTTTATAAGTAT
Found at i:7942727 original size:25 final size:24
Alignment explanation
Indices: 7942699--7942753 Score: 56
Period size: 24 Copynumber: 2.2 Consensus size: 24
7942689 TTAAACATAG
7942699 ATAAAATTTATATAAAATTTTTTAA
1 ATAAAATTTATA-AAAATTTTTTAA
** * * *
7942724 ATAACGTTTGTAAAATTTTTTTTA
1 ATAAAATTTATAAAAATTTTTTAA
7942748 ATAAAA
1 ATAAAA
7942754 ATTTTAATAA
Statistics
Matches: 23, Mismatches: 7, Indels: 1
0.74 0.23 0.03
Matches are distributed among these distances:
24 14 0.61
25 9 0.39
ACGTcount: A:0.47, C:0.02, G:0.04, T:0.47
Consensus pattern (24 bp):
ATAAAATTTATAAAAATTTTTTAA
Found at i:7942834 original size:13 final size:13
Alignment explanation
Indices: 7942816--7942840 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7942806 AATAATATAT
7942816 AAAAAAATTATTA
1 AAAAAAATTATTA
7942829 AAAAAAATTATT
1 AAAAAAATTATT
7942841 TATAATTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (13 bp):
AAAAAAATTATTA
Found at i:7942909 original size:2 final size:2
Alignment explanation
Indices: 7942902--7942926 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7942892 TTTTTATTAA
7942902 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
7942927 AATTTATTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7944591 original size:206 final size:205
Alignment explanation
Indices: 7944197--7944597 Score: 473
Period size: 206 Copynumber: 2.0 Consensus size: 205
7944187 TTTCCATTTG
* * * * * * *
7944197 ACATTTGCTAATGTTTCTGATATAAATCATTTTAGCAAACTAATTGTAGATTTTCCTAAATTTTC
1 ACATTTGCTAATGCTTCAGATATAAATCAGTGTAACAAACTAATTGTAGATTTTACTAAAATTTC
* * * ** * * * * * * *
7944262 ATGCTTTGCAAGATGTTGAGCATAATGGTTTGACTTAGTATATCATTTTATGATTTGGTGAACCT
66 AAGCTTTGCAAGATGTAGAACATAATGGAGTGAATTAGTACACCATATTAAGATTTAGAGAACCT
* * * *
7944327 TTGGAACTCTCAATTCTTTGTAGTTAATCTCAGTGATAATTAAAATTCAAATCAAAGCATGGAAT
131 TTGGAACTCTAAATTCTTTGTACTTAATCTCAGTGATAATGAAAATTCAAACCAAAGCATGGAAT
7944392 CTATTTCTTT
196 CTATTTCTTT
* *
7944402 ACATTTGCTGATGCTTCAGATATAAATCAGTGTAACAAATTAATTGTAGATTTTACTAAAATTTC
1 ACATTTGCTAATGCTTCAGATATAAATCAGTGTAACAAACTAATTGTAGATTTTACTAAAATTTC
* * * * *
7944467 AAGCTTTGCCTAGATGTAGAACATAATGGAGTGAATTAGTGCACCGTATTAAGGTTTAGAGACCC
66 AAGCTTTG-CAAGATGTAGAACATAATGGAGTGAATTAGTACACCATATTAAGATTTAGAGAACC
* *
7944532 ATTT-GAAC-CATAAATTCTTTGTACTTAATCTCAGTGTTAATGAAAATTCAAGCCAAAGCATGG
130 -TTTGGAACTC-TAAATTCTTTGTACTTAATCTCAGTGATAATGAAAATTCAAACCAAAGCATGG
7944595 AAT
193 AAT
7944598 TGTATACCTA
Statistics
Matches: 161, Mismatches: 32, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
205 64 0.40
206 94 0.58
207 3 0.02
ACGTcount: A:0.33, C:0.14, G:0.15, T:0.38
Consensus pattern (205 bp):
ACATTTGCTAATGCTTCAGATATAAATCAGTGTAACAAACTAATTGTAGATTTTACTAAAATTTC
AAGCTTTGCAAGATGTAGAACATAATGGAGTGAATTAGTACACCATATTAAGATTTAGAGAACCT
TTGGAACTCTAAATTCTTTGTACTTAATCTCAGTGATAATGAAAATTCAAACCAAAGCATGGAAT
CTATTTCTTT
Found at i:7958780 original size:11 final size:11
Alignment explanation
Indices: 7958762--7958816 Score: 67
Period size: 11 Copynumber: 5.1 Consensus size: 11
7958752 TTTATAATTT
*
7958762 TTAAATTAATA
1 TTAAAATAATA
* *
7958773 TCAAATTAAT-
1 TTAAAATAATA
*
7958783 TTAAAATATTA
1 TTAAAATAATA
7958794 TTAAAATAATA
1 TTAAAATAATA
7958805 TTAAAATAATA
1 TTAAAATAATA
7958816 T
1 T
7958817 CATCACTTTA
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
10 7 0.18
11 31 0.82
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (11 bp):
TTAAAATAATA
Found at i:7960483 original size:21 final size:21
Alignment explanation
Indices: 7960457--7960498 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
7960447 CTATGTTGAT
7960457 ATTAAAATTTTAA-TTTTAATA
1 ATTAAAA-TTTAATTTTTAATA
7960478 ATTAAAATTTAATTTTTAATA
1 ATTAAAATTTAATTTTTAATA
7960499 GTTTCGAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (21 bp):
ATTAAAATTTAATTTTTAATA
Found at i:7964021 original size:20 final size:21
Alignment explanation
Indices: 7963992--7964034 Score: 70
Period size: 20 Copynumber: 2.1 Consensus size: 21
7963982 AACAAAACAT
7963992 ATTATAAAAATT-AAATTTTA
1 ATTATAAAAATTAAAATTTTA
*
7964012 ATTATTAAAATTAAAATTTTA
1 ATTATAAAAATTAAAATTTTA
7964033 AT
1 AT
7964035 ACTCTATCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
20 11 0.52
21 10 0.48
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (21 bp):
ATTATAAAAATTAAAATTTTA
Found at i:7985144 original size:2 final size:2
Alignment explanation
Indices: 7985139--7985179 Score: 57
Period size: 2 Copynumber: 20.5 Consensus size: 2
7985129 TCTCTCTCTC
*
7985139 TG TG TG TG TG TG TG TG TG TG TG TG TG TG CT- TG TT TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG -TG TG TG TG TG TG T
7985180 CGCTGGTGTT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
1 1 0.03
2 33 0.94
3 1 0.03
ACGTcount: A:0.00, C:0.02, G:0.44, T:0.54
Consensus pattern (2 bp):
TG
Found at i:7986193 original size:47 final size:47
Alignment explanation
Indices: 7986142--7986292 Score: 128
Period size: 50 Copynumber: 3.1 Consensus size: 47
7986132 ATAATTTTAT
7986142 ATCATATTTAATTTATAT-TTAAAAAAATAAAATTATAAAAATGATTA
1 ATCATATTTAATTTATATCTTAAAAAAATAAAATTATAAAAAT-ATTA
* ** * * *
7986189 ATCATATTTAATGTATAAAATGATAAATAAAA-AAAA-AATAATAATTTTA
1 ATCATATTTAAT-T-T-ATATCTTAAA-AAAATAAAATTATAAAAATATTA
* * *
7986238 TATCATATTTAATTTATATCTAAAAAAAATAAAATTACCAAAATAAATTA
1 -ATCATATTTAATTTATATCTTAAAAAAATAAAATTA-TAAAA-ATATTA
7986288 ATCAT
1 ATCAT
7986293 CTTTTTGAAA
Statistics
Matches: 80, Mismatches: 14, Indels: 18
0.71 0.12 0.16
Matches are distributed among these distances:
46 4 0.05
47 22 0.28
48 3 0.04
49 13 0.16
50 26 0.32
51 8 0.10
52 4 0.05
ACGTcount: A:0.56, C:0.05, G:0.02, T:0.37
Consensus pattern (47 bp):
ATCATATTTAATTTATATCTTAAAAAAATAAAATTATAAAAATATTA
Found at i:7986248 original size:50 final size:51
Alignment explanation
Indices: 7986093--7986255 Score: 160
Period size: 50 Copynumber: 3.3 Consensus size: 51
7986083 TATTAAAATA
* * * *
7986093 ATATTTGATGTATAAAACGATAAATAAAATACGATAATAATAATTTTATATC
1 ATATTTAATGTATAAAATGATAAATAAAATA-AAAAATAATAATTTTATATC
* * * * *
7986145 ATATTTAAT-T-T-ATAT-TTAAA-AAAATAAAATTATAAAAATGATTA-ATC
1 ATATTTAATGTATAAAATGATAAATAAAATAAAA-AATAATAAT-TTTATATC
7986192 ATATTTAATGTATAAAATGATAAATAAAA-AAAAAATAATAATTTTATATC
1 ATATTTAATGTATAAAATGATAAATAAAATAAAAAATAATAATTTTATATC
*
7986242 ATATTTAATTTATA
1 ATATTTAATGTATA
7986256 TCTAAAAAAA
Statistics
Matches: 88, Mismatches: 15, Indels: 18
0.73 0.12 0.15
Matches are distributed among these distances:
46 1 0.01
47 25 0.28
48 8 0.09
49 6 0.07
50 27 0.31
51 9 0.10
52 12 0.14
ACGTcount: A:0.53, C:0.03, G:0.04, T:0.39
Consensus pattern (51 bp):
ATATTTAATGTATAAAATGATAAATAAAATAAAAAATAATAATTTTATATC
Found at i:7986251 original size:97 final size:101
Alignment explanation
Indices: 7986093--7986292 Score: 300
Period size: 99 Copynumber: 2.0 Consensus size: 101
7986083 TATTAAAATA
* * *
7986093 ATATTTGATGTATAAAACGATAAATAAAATACGATAATAATAATTTTATATCATATTTAATTTAT
1 ATATTTAATGTATAAAACGATAAATAAAATACAAAAATAATAATTTTATATCATATTTAATTTAT
* * *
7986158 AT-TTAAAAAAATAAAATTATAAAAAT-GATTAATC
66 ATCTAAAAAAAATAAAATTACAAAAATAAATTAATC
*
7986192 ATATTTAATGTATAAAATGATAAATAAAA-A-AAAAATAATAATTTTATATCATATTTAATTTAT
1 ATATTTAATGTATAAAACGATAAATAAAATACAAAAATAATAATTTTATATCATATTTAATTTAT
*
7986255 ATCTAAAAAAAATAAAATTACCAAAATAAATTAATC
66 ATCTAAAAAAAATAAAATTACAAAAATAAATTAATC
7986291 AT
1 AT
7986293 CTTTTTGAAA
Statistics
Matches: 91, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
97 33 0.36
98 22 0.24
99 36 0.40
ACGTcount: A:0.55, C:0.04, G:0.04, T:0.37
Consensus pattern (101 bp):
ATATTTAATGTATAAAACGATAAATAAAATACAAAAATAATAATTTTATATCATATTTAATTTAT
ATCTAAAAAAAATAAAATTACAAAAATAAATTAATC
Found at i:7986306 original size:99 final size:99
Alignment explanation
Indices: 7986093--7986316 Score: 283
Period size: 99 Copynumber: 2.3 Consensus size: 99
7986083 TATTAAAATA
* * * * *
7986093 ATATTTGATGTATAAAACGATAAATAAAATACGATAATAATAATTTTATATCATATTTAATTTAT
1 ATATTTAATGAATAAAATGATAAATAAAATACAAAAATAATAATTTTATATCATATTTAATTTAT
* * *
7986158 ATTTAAAAAAATAAAATTATAAAAATGATTAATC
66 ATTAAAAAAAATAAAATTACAAAAATAATTAATC
*
7986192 ATATTTAATGTATAAAATGATAAATAAAA-A-AAAAATAATAATTTTATATCATATTTAATTTAT
1 ATATTTAATGAATAAAATGATAAATAAAATACAAAAATAATAATTTTATATCATATTTAATTTAT
*
7986255 ATCTAAAAAAAATAAAATTACCAAAATAAATTAATC
66 AT-TAAAAAAAATAAAATTACAAAAAT-AATTAATC
* *
7986291 ATCTTT-TTGAAATAAAATGATTAAAT
1 ATATTTAATG-AATAAAATGA-TAAAT
7986317 CCTACCAAAA
Statistics
Matches: 110, Mismatches: 11, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
97 33 0.30
98 24 0.22
99 48 0.44
100 5 0.05
ACGTcount: A:0.54, C:0.04, G:0.04, T:0.38
Consensus pattern (99 bp):
ATATTTAATGAATAAAATGATAAATAAAATACAAAAATAATAATTTTATATCATATTTAATTTAT
ATTAAAAAAAATAAAATTACAAAAATAATTAATC
Found at i:7986400 original size:25 final size:25
Alignment explanation
Indices: 7986332--7986402 Score: 63
Period size: 26 Copynumber: 2.7 Consensus size: 25
7986322 CAAAAATTAT
*
7986332 TTTTAATTTATAAATCAAATTTATATA
1 TTTT-ATTT-TAAATTAAATTTATATA
* **
7986359 TTTTATTATACTTTTAAATTT-TATA
1 TTTTATTTTA-AATTAAATTTATATA
7986384 TTATTATTTTAAATTAAAT
1 TT-TTATTTTAAATTAAAT
7986403 AAATTAAAAA
Statistics
Matches: 35, Mismatches: 7, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
25 14 0.40
26 17 0.49
27 4 0.11
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (25 bp):
TTTTATTTTAAATTAAATTTATATA
Found at i:7990355 original size:18 final size:15
Alignment explanation
Indices: 7990316--7990359 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 15
7990306 CAAGAGAAAT
*
7990316 ATTATAAAATATTAA
1 ATTAAAAAATATTAA
7990331 ATTAAAAAATGATTAA
1 ATTAAAAAAT-ATTAA
7990347 ACTTTAAAAAATA
1 A--TTAAAAAATA
7990360 AAATGTTATT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
15 9 0.36
16 6 0.24
17 1 0.04
18 9 0.36
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.34
Consensus pattern (15 bp):
ATTAAAAAATATTAA
Found at i:7992979 original size:18 final size:19
Alignment explanation
Indices: 7992958--7993041 Score: 59
Period size: 18 Copynumber: 4.4 Consensus size: 19
7992948 TATTATACGG
7992958 TAAATAAAT-ATAATTATT
1 TAAATAAATAATAATTATT
*
7992976 TAAATTTAAATAAATTATTATT
1 TAAA--TAAAT-AATAATTATT
* *
7992998 TATAA-AAATCATAA-TATA
1 TA-AATAAATAATAATTATT
* *
7993016 TAAA-AAATTATAATCATT
1 TAAATAAATAATAATTATT
7993034 TAAATAAA
1 TAAATAAA
7993042 AATTTATATC
Statistics
Matches: 52, Mismatches: 7, Indels: 13
0.72 0.10 0.18
Matches are distributed among these distances:
17 10 0.19
18 15 0.29
19 6 0.12
20 9 0.17
22 10 0.19
23 2 0.04
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40
Consensus pattern (19 bp):
TAAATAAATAATAATTATT
Found at i:7993006 original size:16 final size:17
Alignment explanation
Indices: 7992982--7993029 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
7992972 TATTTAAATT
* *
7992982 TAAATAAATTATTATTTA
1 TAAA-AAATTATAATATA
*
7993000 T-AAAAATCATAATATA
1 TAAAAAATTATAATATA
7993016 TAAAAAATTATAAT
1 TAAAAAATTATAAT
7993030 CATTTAAATA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
16 11 0.44
17 13 0.52
18 1 0.04
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (17 bp):
TAAAAAATTATAATATA
Found at i:7993030 original size:23 final size:22
Alignment explanation
Indices: 7993004--7993049 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
7992994 TATTTATAAA
*
7993004 AATCATAATATATAAAAAATTAT
1 AATCAT-ATAAATAAAAAATTAT
* *
7993027 AATCATTTAAATAAAAATTTAT
1 AATCATATAAATAAAAAATTAT
7993049 A
1 A
7993050 TCTATTCATT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 14 0.70
23 6 0.30
ACGTcount: A:0.59, C:0.04, G:0.00, T:0.37
Consensus pattern (22 bp):
AATCATATAAATAAAAAATTAT
Found at i:7996960 original size:19 final size:19
Alignment explanation
Indices: 7996938--7997008 Score: 56
Period size: 19 Copynumber: 3.7 Consensus size: 19
7996928 AGATTTTTGG
7996938 TTTTTTAGTTTTTTTTTTA
1 TTTTTTAGTTTTTTTTTTA
***
7996957 TTTTTTAAAAGTTTTTTTTA
1 TTTTTT-AGTTTTTTTTTTA
*
7996977 -TTTTTA-TTACTATTTTTTA
1 TTTTTTAGTT--TTTTTTTTA
*
7996996 TTTTTTTGTTTTT
1 TTTTTTAGTTTTT
7997009 GTGCTTTTAA
Statistics
Matches: 39, Mismatches: 8, Indels: 10
0.68 0.14 0.18
Matches are distributed among these distances:
18 1 0.03
19 21 0.54
20 15 0.38
21 2 0.05
ACGTcount: A:0.15, C:0.01, G:0.04, T:0.79
Consensus pattern (19 bp):
TTTTTTAGTTTTTTTTTTA
Found at i:7997594 original size:25 final size:27
Alignment explanation
Indices: 7997560--7997616 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
7997550 ACTACTACAT
*
7997560 TTATCTTAAA-AAA-TATAAT-ATTTAA
1 TTATTTTAAATAAATTATAATGA-TTAA
7997585 TTATTTTAAATAAATTATAATGATTAA
1 TTATTTTAAATAAATTATAATGATTAA
7997612 TTATT
1 TTATT
7997617 GTATTTATCC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
25 9 0.32
26 3 0.11
27 15 0.54
28 1 0.04
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (27 bp):
TTATTTTAAATAAATTATAATGATTAA
Found at i:7998700 original size:8 final size:8
Alignment explanation
Indices: 7998687--7998732 Score: 51
Period size: 8 Copynumber: 5.8 Consensus size: 8
7998677 TATGACACAT
7998687 TTTTTATA
1 TTTTTATA
7998695 TTTTTATA
1 TTTTTATA
7998703 TTTTCTA-A
1 TTTT-TATA
7998711 TTTTTAT-
1 TTTTTATA
7998718 TTTTTGATA
1 TTTTT-ATA
*
7998727 TATTTA
1 TTTTTA
7998733 GTAAATAATT
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
7 7 0.21
8 20 0.61
9 6 0.18
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.72
Consensus pattern (8 bp):
TTTTTATA
Found at i:8000081 original size:17 final size:17
Alignment explanation
Indices: 8000061--8000094 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
8000051 AAAAATACGA
8000061 ATAAAAAT-ATAATATGT
1 ATAAAAATCATAA-ATGT
8000078 ATAAAAATCATAAATGT
1 ATAAAAATCATAAATGT
8000095 GTGGTGTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.59, C:0.03, G:0.06, T:0.32
Consensus pattern (17 bp):
ATAAAAATCATAAATGT
Found at i:8001002 original size:17 final size:16
Alignment explanation
Indices: 8000980--8001033 Score: 54
Period size: 18 Copynumber: 3.1 Consensus size: 16
8000970 TTGATTTGTA
8000980 TTTAAATAAATATTTAT
1 TTTAAATAAA-ATTTAT
*
8000997 TTTAAATAAAAATATTAA
1 TTTAAAT-AAAAT-TTAT
*
8001015 TTTATATTAAAATTTAT
1 TTTA-AATAAAATTTAT
8001032 TT
1 TT
8001034 AGATACAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
17 14 0.45
18 15 0.48
19 2 0.06
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
TTTAAATAAAATTTAT
Found at i:8005372 original size:2 final size:2
Alignment explanation
Indices: 8005365--8005389 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
8005355 CTTTTAAAAT
8005365 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
8005390 GCAGACAAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8007944 original size:2 final size:2
Alignment explanation
Indices: 8007939--8007977 Score: 51
Period size: 2 Copynumber: 18.5 Consensus size: 2
8007929 TGTGTGTATC
*
8007939 TA TA TA TGA TA TA TGA TA TA TA TA TA TA TA TA TG TA TA T
1 TA TA TA T-A TA TA T-A TA TA TA TA TA TA TA TA TA TA TA T
8007978 CTCACACATC
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
2 29 0.88
3 4 0.12
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.49
Consensus pattern (2 bp):
TA
Found at i:8013042 original size:22 final size:22
Alignment explanation
Indices: 8013003--8013045 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
8012993 GTATATTTAT
* *
8013003 ATTTGTATATCTAGAATTAAGC
1 ATTTGTATACCTAAAATTAAGC
*
8013025 ATTTGTATCCCTAAAATTAAG
1 ATTTGTATACCTAAAATTAAG
8013046 GACAAAAAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.40
Consensus pattern (22 bp):
ATTTGTATACCTAAAATTAAGC
Found at i:8017388 original size:6 final size:6
Alignment explanation
Indices: 8017377--8017401 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
8017367 TTTAAATAAA
8017377 AAAAAT AAAAAT AAAAAT AAAAAT A
1 AAAAAT AAAAAT AAAAAT AAAAAT A
8017402 TTATACAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAAAT
Found at i:8018393 original size:2 final size:2
Alignment explanation
Indices: 8018386--8018416 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
8018376 GTTGGTGTAA
*
8018386 AT AT AT AT AT AT AT AT AT AT AA AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8018417 AAGAATCTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:8018417 original size:10 final size:10
Alignment explanation
Indices: 8018383--8018418 Score: 54
Period size: 10 Copynumber: 3.4 Consensus size: 10
8018373 ATTGTTGGTG
8018383 TAAATATATA
1 TAAATATATA
8018393 TATATATATATA
1 TA-A-ATATATA
8018405 TAAATATATA
1 TAAATATATA
8018415 TAAA
1 TAAA
8018419 GAATCTTGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
10 13 0.54
11 2 0.08
12 9 0.38
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (10 bp):
TAAATATATA
Found at i:8023572 original size:11 final size:12
Alignment explanation
Indices: 8023549--8023577 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
8023539 ACAATTAATT
8023549 TTATTTCTTCTC
1 TTATTTCTTCTC
8023561 TTATTT-TTCTC
1 TTATTTCTTCTC
8023572 TTATTT
1 TTATTT
8023578 GTTTTTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 11 0.65
12 6 0.35
ACGTcount: A:0.10, C:0.17, G:0.00, T:0.72
Consensus pattern (12 bp):
TTATTTCTTCTC
Found at i:8028134 original size:11 final size:11
Alignment explanation
Indices: 8028098--8028127 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
8028088 ATTATTTTTA
8028098 ATATAAATTAT
1 ATATAAATTAT
*
8028109 ATTTAAATTAT
1 ATATAAATTAT
8028120 ATATAAAT
1 ATATAAAT
8028128 ATAATATTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (11 bp):
ATATAAATTAT
Found at i:8028166 original size:15 final size:17
Alignment explanation
Indices: 8028146--8028179 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
8028136 TTTATTTAAT
8028146 TAAC-TTATTAA-ATAA
1 TAACTTTATTAATATAA
8028161 TAACTTTATTAATATAA
1 TAACTTTATTAATATAA
8028178 TA
1 TA
8028180 CATATATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.24
16 7 0.41
17 6 0.35
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (17 bp):
TAACTTTATTAATATAA
Found at i:8028659 original size:19 final size:18
Alignment explanation
Indices: 8028619--8028692 Score: 64
Period size: 19 Copynumber: 4.1 Consensus size: 18
8028609 ATTTGATTCG
*
8028619 AAATTAATTTAATAATTTT
1 AAATTAATATAAT-ATTTT
8028638 AAATTAATATAATATTTAT
1 AAATTAATATAATATTT-T
*
8028657 AAA--AATATAAAATTTT
1 AAATTAATATAATATTTT
* *
8028673 TAATATAA-ATAACATTTT
1 AAAT-TAATATAATATTTT
8028691 AA
1 AA
8028693 TTATTTATAA
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
16 3 0.07
17 11 0.24
18 14 0.30
19 18 0.39
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.45
Consensus pattern (18 bp):
AAATTAATATAATATTTT
Found at i:8028726 original size:17 final size:17
Alignment explanation
Indices: 8028696--8028728 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
8028686 ATTTTAATTA
8028696 TTTATAAATGTAATATT
1 TTTATAAATGTAATATT
8028713 TTTATTAAAT-TAATAT
1 TTTA-TAAATGTAATAT
8028729 ATTAAAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (17 bp):
TTTATAAATGTAATATT
Found at i:8028761 original size:12 final size:11
Alignment explanation
Indices: 8028744--8028776 Score: 50
Period size: 12 Copynumber: 3.0 Consensus size: 11
8028734 AAATAAAGTT
8028744 ATTAATATAAA
1 ATTAATATAAA
8028755 ATATAATATAAA
1 AT-TAATATAAA
8028767 ATTAA-ATAAA
1 ATTAATATAAA
8028777 TATTTTTATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 5 0.24
11 5 0.24
12 11 0.52
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (11 bp):
ATTAATATAAA
Found at i:8029304 original size:33 final size:34
Alignment explanation
Indices: 8029253--8029316 Score: 96
Period size: 32 Copynumber: 1.9 Consensus size: 34
8029243 TTATGCATTA
*
8029253 AAAATATAGAACATAAAAAAAAGAAAA-AGAAAAG
1 AAAATATAGAACA-AAAAAAAAAAAAAGAGAAAAG
8029287 AAAA-ATAGAACAAAAAAAAAAAAAAGAGAA
1 AAAATATAGAACAAAAAAAAAAAAAAGAGAA
8029317 GGTGACATGT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 12 0.43
33 12 0.43
34 4 0.14
ACGTcount: A:0.80, C:0.03, G:0.11, T:0.06
Consensus pattern (34 bp):
AAAATATAGAACAAAAAAAAAAAAAAGAGAAAAG
Found at i:8029307 original size:16 final size:16
Alignment explanation
Indices: 8029252--8029307 Score: 51
Period size: 16 Copynumber: 3.4 Consensus size: 16
8029242 ATTATGCATT
*
8029252 AAAAATATAGAACATAA
1 AAAAAAATAGAACA-AA
* *
8029269 AAAAAAGA-AAAAGAAA
1 AAAAAA-ATAGAACAAA
*
8029285 AGAAAAATAGAACAAA
1 AAAAAAATAGAACAAA
8029301 AAAAAAA
1 AAAAAAA
8029308 AAAAGAGAAG
Statistics
Matches: 30, Mismatches: 7, Indels: 5
0.71 0.17 0.12
Matches are distributed among these distances:
15 1 0.03
16 19 0.63
17 9 0.30
18 1 0.03
ACGTcount: A:0.80, C:0.04, G:0.09, T:0.07
Consensus pattern (16 bp):
AAAAAAATAGAACAAA
Found at i:8035647 original size:48 final size:47
Alignment explanation
Indices: 8035592--8035720 Score: 215
Period size: 48 Copynumber: 2.7 Consensus size: 47
8035582 GAGGCAACAA
*
8035592 AGGGAAAGGGAGGAGGAAGAGAGAGAGCAAATGAGACGTGAATTGGAG
1 AGGGAAAGGGAGGA-GAAGAGAGAGAGCAAAAGAGACGTGAATTGGAG
8035640 AGGGAAAGGGAGGAGAAGGAGAGAGAGCAAAAGAGACGTGAATTGGAG
1 AGGGAAAGGGAGGAGAA-GAGAGAGAGCAAAAGAGACGTGAATTGGAG
8035688 AGGGAAAGGGAGGAGAAG-GAGAGAGCACAAAGA
1 AGGGAAAGGGAGGAGAAGAGAGAGAGCA-AAAGA
8035721 AGGCTTGAGA
Statistics
Matches: 78, Mismatches: 1, Indels: 5
0.93 0.01 0.06
Matches are distributed among these distances:
46 9 0.12
47 9 0.12
48 60 0.77
ACGTcount: A:0.44, C:0.05, G:0.46, T:0.05
Consensus pattern (47 bp):
AGGGAAAGGGAGGAGAAGAGAGAGAGCAAAAGAGACGTGAATTGGAG
Found at i:8035663 original size:23 final size:23
Alignment explanation
Indices: 8035637--8035712 Score: 73
Period size: 23 Copynumber: 3.2 Consensus size: 23
8035627 ACGTGAATTG
8035637 GAGAGGGAAAGGGAGGAGAAGGA
1 GAGAGGGAAAGGGAGGAGAAGGA
* * * * *
8035660 GAGAGAGCAAAAGAGACGTGAATTG-
1 GAGAG-G-GAAAGGGAGGAGAA-GGA
8035685 GAGAGGGAAAGGGAGGAGAAGGA
1 GAGAGGGAAAGGGAGGAGAAGGA
8035708 GAGAG
1 GAGAG
8035713 CACAAAGAAG
Statistics
Matches: 39, Mismatches: 10, Indels: 8
0.68 0.18 0.14
Matches are distributed among these distances:
22 1 0.03
23 20 0.51
24 2 0.05
25 15 0.38
26 1 0.03
ACGTcount: A:0.43, C:0.03, G:0.50, T:0.04
Consensus pattern (23 bp):
GAGAGGGAAAGGGAGGAGAAGGA
Found at i:8036131 original size:24 final size:24
Alignment explanation
Indices: 8036072--8036132 Score: 95
Period size: 24 Copynumber: 2.5 Consensus size: 24
8036062 TGCTGTGGAG
* *
8036072 AGGGCAGCTGCAGAGGCTCGAGAA
1 AGGGCAGCTGCTGAGGCTCAAGAA
8036096 AGGGCAGCTGCTGAGGCTCAAGAA
1 AGGGCAGCTGCTGAGGCTCAAGAA
*
8036120 AGGGCTGCTGCTG
1 AGGGCAGCTGCTG
8036133 CAAGGGCAAG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.25, C:0.21, G:0.41, T:0.13
Consensus pattern (24 bp):
AGGGCAGCTGCTGAGGCTCAAGAA
Found at i:8043244 original size:38 final size:37
Alignment explanation
Indices: 8043187--8043262 Score: 134
Period size: 38 Copynumber: 2.0 Consensus size: 37
8043177 TGGAGAGAGA
8043187 TTGCGAATGAAAAGATATTTTTATGAAAAGAAAAGCG
1 TTGCGAATGAAAAGATATTTTTATGAAAAGAAAAGCG
*
8043224 TTGCGAATTGAACAGATATTTTTATGAAAAGAAAAGCG
1 TTGCGAA-TGAAAAGATATTTTTATGAAAAGAAAAGCG
8043262 T
1 T
8043263 AAAAATTAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
37 7 0.19
38 30 0.81
ACGTcount: A:0.43, C:0.07, G:0.21, T:0.29
Consensus pattern (37 bp):
TTGCGAATGAAAAGATATTTTTATGAAAAGAAAAGCG
Found at i:8047041 original size:2 final size:2
Alignment explanation
Indices: 8047034--8047066 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
8047024 AAACATTTAT
8047034 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
8047067 TGCATATCTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:8054081 original size:3 final size:3
Alignment explanation
Indices: 8054073--8054097 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
8054063 AAGGCTTGGT
8054073 TTG TTG TTG TTG TTG TTG TTG TTG T
1 TTG TTG TTG TTG TTG TTG TTG TTG T
8054098 AATCCTAGCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.00, G:0.32, T:0.68
Consensus pattern (3 bp):
TTG
Found at i:8055596 original size:2 final size:2
Alignment explanation
Indices: 8055589--8055620 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
8055579 TTATTTCATA
8055589 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
8055621 ATTTGTGCCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:8066885 original size:19 final size:19
Alignment explanation
Indices: 8066872--8066909 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
8066862 CTTCTTTGTT
8066872 TGCTATCTTTTTCTAATGA
1 TGCTATCTTTTTCTAATGA
8066891 TGCTATCTTTTTCTAATGA
1 TGCTATCTTTTTCTAATGA
8066910 ACTTTTCATC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.21, C:0.16, G:0.11, T:0.53
Consensus pattern (19 bp):
TGCTATCTTTTTCTAATGA
Found at i:8069982 original size:12 final size:12
Alignment explanation
Indices: 8069965--8069989 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8069955 TCCTTTAATT
8069965 ATATTTTCTTGG
1 ATATTTTCTTGG
8069977 ATATTTTCTTGG
1 ATATTTTCTTGG
8069989 A
1 A
8069990 CACTCTGAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.20, C:0.08, G:0.16, T:0.56
Consensus pattern (12 bp):
ATATTTTCTTGG
Found at i:8076639 original size:16 final size:16
Alignment explanation
Indices: 8076618--8076652 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
8076608 TGGCACTTAG
* *
8076618 ATGTCAGAGCAATAGA
1 ATGTCAGAACAATAAA
8076634 ATGTCAGAACAATAAA
1 ATGTCAGAACAATAAA
8076650 ATG
1 ATG
8076653 CTCATTCTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.49, C:0.11, G:0.20, T:0.20
Consensus pattern (16 bp):
ATGTCAGAACAATAAA
Found at i:8078534 original size:17 final size:16
Alignment explanation
Indices: 8078510--8078585 Score: 59
Period size: 17 Copynumber: 4.8 Consensus size: 16
8078500 GTGTTATGAG
8078510 TTAATTTTACATCAAT
1 TTAATTTTACATCAAT
* *
8078526 TTAATTTTTA-ATTAAA
1 TTAA-TTTTACATCAAT
* * *
8078542 TT-ATGTT-CATGAGT
1 TTAATTTTACATCAAT
8078556 TATAATTTTACATCAAT
1 T-TAATTTTACATCAAT
8078573 TTAATTTTTACAT
1 TTAA-TTTTACAT
8078586 TTACTTAAAA
Statistics
Matches: 45, Mismatches: 9, Indels: 11
0.69 0.14 0.17
Matches are distributed among these distances:
14 7 0.16
15 2 0.04
16 17 0.38
17 19 0.42
ACGTcount: A:0.36, C:0.08, G:0.04, T:0.53
Consensus pattern (16 bp):
TTAATTTTACATCAAT
Found at i:8078570 original size:47 final size:45
Alignment explanation
Indices: 8078495--8078582 Score: 142
Period size: 47 Copynumber: 1.9 Consensus size: 45
8078485 AGATTAGTTC
8078495 AATTAGTGTTATGAGTTAATTTTACATCAATTTAATTTTTAATTA
1 AATTAGTGTTATGAGTTAATTTTACATCAATTTAATTTTTAATTA
8078540 AATTA-TGTTCATGAGTTATAATTTTACATCAATTTAATTTTTA
1 AATTAGTGTT-ATGAG-T-TAATTTTACATCAATTTAATTTTTA
8078583 CATTTACTTA
Statistics
Matches: 40, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
44 4 0.10
45 10 0.25
46 1 0.03
47 25 0.62
ACGTcount: A:0.35, C:0.06, G:0.08, T:0.51
Consensus pattern (45 bp):
AATTAGTGTTATGAGTTAATTTTACATCAATTTAATTTTTAATTA
Found at i:8080849 original size:43 final size:43
Alignment explanation
Indices: 8080767--8080849 Score: 130
Period size: 43 Copynumber: 1.9 Consensus size: 43
8080757 ACATATTAAC
** **
8080767 TTTTTTGTTTGGATAAATTTTTAATTTAAGGAATTGAAAAGTT
1 TTTTTTGTTTGGATAAAAATTTAATTTAAGGAAAGGAAAAGTT
8080810 TTTTTTGTTTGGATAAAAATTTAATTTAAGGAAAGGAAAA
1 TTTTTTGTTTGGATAAAAATTTAATTTAAGGAAAGGAAAA
8080850 AAAATGACAA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.37, C:0.00, G:0.17, T:0.46
Consensus pattern (43 bp):
TTTTTTGTTTGGATAAAAATTTAATTTAAGGAAAGGAAAAGTT
Found at i:8080888 original size:19 final size:18
Alignment explanation
Indices: 8080864--8080899 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
8080854 TGACAACTCA
*
8080864 ATAATTTTTTATTTTTTTT
1 ATAA-TTTTAATTTTTTTT
8080883 ATAATTTTAATTTTTTT
1 ATAATTTTAATTTTTTT
8080900 AATACCATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (18 bp):
ATAATTTTAATTTTTTTT
Found at i:8082098 original size:45 final size:47
Alignment explanation
Indices: 8082028--8082119 Score: 143
Period size: 45 Copynumber: 2.0 Consensus size: 47
8082018 AGATTGTTTG
8082028 TGAATTAAGTACTTATAGAAAGATTGTAGATTATT-TGATATGTGTT
1 TGAATTAAGTACTTATAGAAAGATTGTAGATTATTGTGATATGTGTT
* * *
8082074 TGAATTAA-TATTTGTATAAAGATTGTAGATTATTGTGATATGTGTT
1 TGAATTAAGTACTTATAGAAAGATTGTAGATTATTGTGATATGTGTT
8082120 GTATATGCAT
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
45 23 0.55
46 19 0.45
ACGTcount: A:0.34, C:0.01, G:0.20, T:0.46
Consensus pattern (47 bp):
TGAATTAAGTACTTATAGAAAGATTGTAGATTATTGTGATATGTGTT
Found at i:8085681 original size:19 final size:20
Alignment explanation
Indices: 8085640--8085686 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 20
8085630 AAAACTTTCA
* *
8085640 TTTCCTTTCGTTTACATTCC
1 TTTCCTTTCATTTACATTAC
*
8085660 TTTCC-TTCATTTACTTTAC
1 TTTCCTTTCATTTACATTAC
*
8085679 TTTACTTT
1 TTTCCTTT
8085687 AATATCTATC
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.13, C:0.26, G:0.02, T:0.60
Consensus pattern (20 bp):
TTTCCTTTCATTTACATTAC
Found at i:8086015 original size:30 final size:30
Alignment explanation
Indices: 8085959--8086032 Score: 78
Period size: 30 Copynumber: 2.5 Consensus size: 30
8085949 GGTTAATGGT
*
8085959 TTATTTTGATGCAAATTATAGGTTAAGAAC
1 TTATTTGGATGCAAATTATAGGTTAAGAAC
* * **
8085989 TTATTTGGGTGCAAATTA-ATGTTTAAGAGT
1 TTATTTGGATGCAAATTATA-GGTTAAGAAC
*
8086019 TTATTTGAATGCAA
1 TTATTTGGATGCAA
8086033 TAAAGTATAA
Statistics
Matches: 36, Mismatches: 7, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
29 1 0.03
30 35 0.97
ACGTcount: A:0.34, C:0.05, G:0.19, T:0.42
Consensus pattern (30 bp):
TTATTTGGATGCAAATTATAGGTTAAGAAC
Found at i:8086222 original size:20 final size:17
Alignment explanation
Indices: 8086187--8086233 Score: 60
Period size: 16 Copynumber: 2.7 Consensus size: 17
8086177 GCACGGGCAA
8086187 TAATTATATATATAATT
1 TAATTATATATATAATT
8086204 TAATTATA-ATATAATT
1 TAATTATATATATAATT
*
8086220 AATAATTTTATATA
1 --TAATTATATATA
8086234 AAAATAAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
16 8 0.31
17 8 0.31
18 7 0.27
19 3 0.12
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
TAATTATATATATAATT
Found at i:8087491 original size:17 final size:19
Alignment explanation
Indices: 8087466--8087504 Score: 55
Period size: 17 Copynumber: 2.2 Consensus size: 19
8087456 AAAAGATATC
*
8087466 AAATTTATTTT-A-TAAAA
1 AAATATATTTTCACTAAAA
8087483 AAATATATTTTCACTAAAA
1 AAATATATTTTCACTAAAA
8087502 AAA
1 AAA
8087505 ATTAAATATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 10 0.53
18 1 0.05
19 8 0.42
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.38
Consensus pattern (19 bp):
AAATATATTTTCACTAAAA
Found at i:8091796 original size:33 final size:33
Alignment explanation
Indices: 8091754--8091818 Score: 130
Period size: 33 Copynumber: 2.0 Consensus size: 33
8091744 AAAAGAAGAT
8091754 CGTAAGTAGCTGAGAAAGAAATTCCAAAATTAA
1 CGTAAGTAGCTGAGAAAGAAATTCCAAAATTAA
8091787 CGTAAGTAGCTGAGAAAGAAATTCCAAAATTA
1 CGTAAGTAGCTGAGAAAGAAATTCCAAAATTA
8091819 TGTGCTAGAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.48, C:0.12, G:0.18, T:0.22
Consensus pattern (33 bp):
CGTAAGTAGCTGAGAAAGAAATTCCAAAATTAA
Found at i:8097703 original size:22 final size:22
Alignment explanation
Indices: 8097677--8097718 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
8097667 TGTATATTTA
* *
8097677 TATTTGTATCTCTAGAATTAAG
1 TATTTGTATCCCTAAAATTAAG
8097699 TATTTGTATCCCTAAAATTA
1 TATTTGTATCCCTAAAATTA
8097719 TGATAGATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.12, G:0.10, T:0.45
Consensus pattern (22 bp):
TATTTGTATCCCTAAAATTAAG
Found at i:8098151 original size:22 final size:20
Alignment explanation
Indices: 8098107--8098152 Score: 56
Period size: 22 Copynumber: 2.2 Consensus size: 20
8098097 CAGGGAAGAG
*
8098107 ATTGAAAACCTGAAAAACTT
1 ATTGAAAACCTGAAAAACCT
*
8098127 ATTGAAAATCCTTGAAAAGCCT
1 ATTGAAAA-CC-TGAAAAACCT
8098149 ATTG
1 ATTG
8098153 TGGTATGTTC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 8 0.36
21 2 0.09
22 12 0.55
ACGTcount: A:0.43, C:0.15, G:0.13, T:0.28
Consensus pattern (20 bp):
ATTGAAAACCTGAAAAACCT
Found at i:8116223 original size:21 final size:23
Alignment explanation
Indices: 8116197--8116241 Score: 67
Period size: 21 Copynumber: 2.0 Consensus size: 23
8116187 TAAAAAATGC
*
8116197 ATTAAATC-ATTACTTA-AAAAA
1 ATTAAATCAATTAATTATAAAAA
8116218 ATTAAATCAATTAATTATAAAAA
1 ATTAAATCAATTAATTATAAAAA
8116241 A
1 A
8116242 AGCTTAGTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 8 0.38
22 7 0.33
23 6 0.29
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (23 bp):
ATTAAATCAATTAATTATAAAAA
Found at i:8117432 original size:2 final size:2
Alignment explanation
Indices: 8117425--8117450 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
8117415 ATATTTGCTT
8117425 TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC
8117451 CCTTTTTACT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:8130526 original size:26 final size:26
Alignment explanation
Indices: 8130487--8130538 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
8130477 GATTGATAAG
* *
8130487 GTCTATATAGGTATGGGTGTGTATGT
1 GTCTACATAAGTATGGGTGTGTATGT
8130513 GTCTACATAAGTATGGGTGTGTATGT
1 GTCTACATAAGTATGGGTGTGTATGT
8130539 TTGAGTGGAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.21, C:0.06, G:0.33, T:0.40
Consensus pattern (26 bp):
GTCTACATAAGTATGGGTGTGTATGT
Found at i:8131014 original size:63 final size:61
Alignment explanation
Indices: 8130942--8131068 Score: 218
Period size: 63 Copynumber: 2.0 Consensus size: 61
8130932 ATGAAACTGA
* *
8130942 CTTCAGACATTCAAAGTTGAACTTTTTTATATTCATCTGGGCCAACGACCTCAAATTAATTAG
1 CTTCAGACATTCAAAGTTGAAATTTTTTATATTCATCTAGGCCAACGA-CTC-AATTAATTAG
8131005 CTTCAGACATTCAAAGTTGAAATTTTTTATATTCATCTAGGCCAACGACTCAATTAATTAG
1 CTTCAGACATTCAAAGTTGAAATTTTTTATATTCATCTAGGCCAACGACTCAATTAATTAG
8131066 CTT
1 CTT
8131069 AAGTGCACAA
Statistics
Matches: 62, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
61 13 0.21
62 3 0.05
63 46 0.74
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (61 bp):
CTTCAGACATTCAAAGTTGAAATTTTTTATATTCATCTAGGCCAACGACTCAATTAATTAG
Found at i:8133580 original size:10 final size:10
Alignment explanation
Indices: 8133567--8133606 Score: 55
Period size: 10 Copynumber: 4.0 Consensus size: 10
8133557 ATAAATAATA
8133567 TTATTATTAT
1 TTATTATTAT
*
8133577 TTATAATTAT
1 TTATTATTAT
8133587 TTATTAGTTAT
1 TTATTA-TTAT
8133598 TT-TTATTAT
1 TTATTATTAT
8133607 ATTTATTAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
9 4 0.15
10 17 0.63
11 6 0.22
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.68
Consensus pattern (10 bp):
TTATTATTAT
Found at i:8138418 original size:29 final size:30
Alignment explanation
Indices: 8138386--8138453 Score: 77
Period size: 29 Copynumber: 2.3 Consensus size: 30
8138376 GTAATCATCC
*
8138386 AAATTCTTATCAT-TTTATTGTAATCGATT
1 AAATTCTTATCATATTTATTGTAATCAATT
* * *
8138415 AAATGCTTA-CATATTTATTTTCATCAATT
1 AAATTCTTATCATATTTATTGTAATCAATT
*
8138444 AAATTTTTAT
1 AAATTCTTAT
8138454 TAAACAAAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
28 3 0.10
29 28 0.90
ACGTcount: A:0.34, C:0.10, G:0.04, T:0.51
Consensus pattern (30 bp):
AAATTCTTATCATATTTATTGTAATCAATT
Found at i:8142060 original size:21 final size:21
Alignment explanation
Indices: 8142036--8142080 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
8142026 TTTATTTATT
* *
8142036 TATTTATTTATTCA-TTGTATA
1 TATTTA-TCATTCATTTGCATA
8142057 TATTTATCATTCATTTGCATA
1 TATTTATCATTCATTTGCATA
8142078 TAT
1 TAT
8142081 ATAACATAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 6 0.29
21 15 0.71
ACGTcount: A:0.29, C:0.09, G:0.04, T:0.58
Consensus pattern (21 bp):
TATTTATCATTCATTTGCATA
Found at i:8149072 original size:63 final size:63
Alignment explanation
Indices: 8149000--8149128 Score: 231
Period size: 63 Copynumber: 2.0 Consensus size: 63
8148990 ATGAAACTGA
* *
8149000 CTTCAGACATTCAAAGTTGAACTTTTTTATATTCATCTGGGCCAACGACCTCAAATTAATTAG
1 CTTCAGACATTCAAAGTTGAAATTTTTTATATTCATCTAGGCCAACGACCTCAAATTAATTAG
*
8149063 CTTCAGACATTCAAAGTTGAAATTTTTTATATTCATCTAGGCCAACGGCCTCAAATTAATTAG
1 CTTCAGACATTCAAAGTTGAAATTTTTTATATTCATCTAGGCCAACGACCTCAAATTAATTAG
8149126 CTT
1 CTT
8149129 AGGTGCCACA
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
63 63 1.00
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (63 bp):
CTTCAGACATTCAAAGTTGAAATTTTTTATATTCATCTAGGCCAACGACCTCAAATTAATTAG
Found at i:8151571 original size:2 final size:2
Alignment explanation
Indices: 8151566--8151590 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
8151556 CCTTTCTCTC
8151566 TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG T
8151591 ATATATTTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:8157000 original size:52 final size:52
Alignment explanation
Indices: 8156916--8157052 Score: 188
Period size: 52 Copynumber: 2.7 Consensus size: 52
8156906 ACCATACAAG
* * *
8156916 CTTACCCATTAAGAAATC-TC-TTATTTTAGAATTCTTCTCCTGTAAGTCAAA
1 CTTACCTATTAAG-AATCTTCTTTCTTTTAGAATTCTTCTCCTGCAAGTCAAA
* * *
8156967 CTTGCCTATTAAGAATCTTTTTTCTTTTAGAATTCTTCTCTTGCAAGTCAAA
1 CTTACCTATTAAGAATCTTCTTTCTTTTAGAATTCTTCTCCTGCAAGTCAAA
*
8157019 CTTACCTATTAAGAATCTTCTTTCTCTTAGAATT
1 CTTACCTATTAAGAATCTTCTTTCTTTTAGAATT
8157053 TTTTTTTAAG
Statistics
Matches: 75, Mismatches: 9, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
50 4 0.05
51 12 0.16
52 59 0.79
ACGTcount: A:0.28, C:0.20, G:0.08, T:0.44
Consensus pattern (52 bp):
CTTACCTATTAAGAATCTTCTTTCTTTTAGAATTCTTCTCCTGCAAGTCAAA
Found at i:8157126 original size:10 final size:11
Alignment explanation
Indices: 8157091--8157129 Score: 62
Period size: 11 Copynumber: 3.6 Consensus size: 11
8157081 AATATCTGAT
8157091 AAATCTCAAAC
1 AAATCTCAAAC
8157102 AAATCTCAAAC
1 AAATCTCAAAC
*
8157113 AAATC-CAAAG
1 AAATCTCAAAC
8157123 AAATCTC
1 AAATCTC
8157130 CACATTGACT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
10 9 0.35
11 17 0.65
ACGTcount: A:0.54, C:0.26, G:0.03, T:0.18
Consensus pattern (11 bp):
AAATCTCAAAC
Found at i:8157358 original size:25 final size:24
Alignment explanation
Indices: 8157326--8157390 Score: 69
Period size: 25 Copynumber: 2.6 Consensus size: 24
8157316 TCTCAAACCA
8157326 AGCTCTTCCCACATCTC-AAACTTT
1 AGCTCTT-CCACATCTCGAAACTTT
** *
8157350 CAGCTCTTCCACGCCTCGAACCTTT
1 -AGCTCTTCCACATCTCGAAACTTT
8157375 AGCTCTTTCCACATCT
1 AGCTC-TTCCACATCT
8157391 TGAATTTTTC
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
24 12 0.36
25 21 0.64
ACGTcount: A:0.20, C:0.40, G:0.08, T:0.32
Consensus pattern (24 bp):
AGCTCTTCCACATCTCGAAACTTT
Found at i:8157530 original size:32 final size:31
Alignment explanation
Indices: 8157446--8157534 Score: 90
Period size: 31 Copynumber: 2.9 Consensus size: 31
8157436 TCACTTGTTG
* * * *
8157446 AGGAACACCACAAC-TTGATACCATTTGTTG
1 AGGAACACAACAGCTTTGATACCATTTATTA
* * *
8157476 AGGAACACTACAGCTCTAATACCATTTATTA
1 AGGAACACAACAGCTTTGATACCATTTATTA
*
8157507 AGGAATACCAACAGCTTTGATACCATTT
1 AGGAACA-CAACAGCTTTGATACCATTT
8157535 TTTGGGCTAA
Statistics
Matches: 47, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
30 12 0.26
31 18 0.38
32 17 0.36
ACGTcount: A:0.36, C:0.22, G:0.13, T:0.28
Consensus pattern (31 bp):
AGGAACACAACAGCTTTGATACCATTTATTA
Found at i:8158121 original size:52 final size:52
Alignment explanation
Indices: 8158059--8158167 Score: 191
Period size: 52 Copynumber: 2.1 Consensus size: 52
8158049 ATTTTCCTGT
*
8158059 AAGTCAAACTTACCTATTAAGAATCTTTTTCCTTTTAGAATTCTTCTTTTGC
1 AAGTCAAACTTACCTATTAAGAATCTTTTTCCTCTTAGAATTCTTCTTTTGC
* *
8158111 AAGTCAAACTTACCTATTAAGAATCTTTTTTCTCTTAGAATTCTTCTTTTGT
1 AAGTCAAACTTACCTATTAAGAATCTTTTTCCTCTTAGAATTCTTCTTTTGC
8158163 AAGTC
1 AAGTC
8158168 TTCTTGTCCA
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 54 1.00
ACGTcount: A:0.28, C:0.18, G:0.08, T:0.46
Consensus pattern (52 bp):
AAGTCAAACTTACCTATTAAGAATCTTTTTCCTCTTAGAATTCTTCTTTTGC
Found at i:8159275 original size:21 final size:21
Alignment explanation
Indices: 8159251--8159305 Score: 67
Period size: 21 Copynumber: 2.5 Consensus size: 21
8159241 TGACTTTAGG
*
8159251 TATTTTATTTTATTTTATTAT-
1 TATTTT-TTTTATTTGATTATC
8159272 TATTTTTATTTATTTGATTATC
1 TATTTTT-TTTATTTGATTATC
8159294 TATTATTTTTTA
1 TATT-TTTTTTA
8159306 AATATATTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
20 1 0.03
21 18 0.60
22 8 0.27
23 3 0.10
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.73
Consensus pattern (21 bp):
TATTTTTTTTATTTGATTATC
Found at i:8159280 original size:22 final size:23
Alignment explanation
Indices: 8159253--8159305 Score: 67
Period size: 22 Copynumber: 2.4 Consensus size: 23
8159243 ACTTTAGGTA
*
8159253 TTTTATTTTATTTTATTAT-TAT
1 TTTTATTTTATTTGATTATCTAT
8159275 TTTTA-TTTATTTGATTATCTAT
1 TTTTATTTTATTTGATTATCTAT
*
8159297 TATT-TTTTA
1 TTTTATTTTA
8159306 AATATATTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 12 0.44
22 15 0.56
ACGTcount: A:0.23, C:0.02, G:0.02, T:0.74
Consensus pattern (23 bp):
TTTTATTTTATTTGATTATCTAT
Done.