Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19866354
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 74000 characters in sequence are not A, C, G, or T
File 30 of 100
Found at i:8438948 original size:14 final size:14
Alignment explanation
Indices: 8438925--8438991 Score: 57
Period size: 14 Copynumber: 4.9 Consensus size: 14
8438915 GCAATCCTCA
8438925 TATATATATATATG
1 TATATATATATATG
*
8438939 TATGTATATATA--
1 TATATATATATATG
* * **
8438951 TATACATACATACA
1 TATATATATATATG
8438965 TATATATATATATG
1 TATATATATATATG
* *
8438979 TATGTATGTATAT
1 TATATATATATAT
8438992 TATTCCAAAT
Statistics
Matches: 41, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
12 9 0.22
14 32 0.78
ACGTcount: A:0.42, C:0.04, G:0.07, T:0.46
Consensus pattern (14 bp):
TATATATATATATG
Found at i:8438948 original size:18 final size:18
Alignment explanation
Indices: 8438925--8438991 Score: 62
Period size: 18 Copynumber: 3.5 Consensus size: 18
8438915 GCAATCCTCA
8438925 TATATATATATATGTATG
1 TATATATATATATGTATG
* **
8438943 TATATATATATACATACATACA
1 TATATATATAT--AT--GTATG
8438965 TATATATATATATGTATG
1 TATATATATATATGTATG
*
8438983 TATGTATAT
1 TATATATAT
8438992 TATTCCAAAT
Statistics
Matches: 38, Mismatches: 7, Indels: 8
0.72 0.13 0.15
Matches are distributed among these distances:
18 21 0.55
20 4 0.11
22 13 0.34
ACGTcount: A:0.42, C:0.04, G:0.07, T:0.46
Consensus pattern (18 bp):
TATATATATATATGTATG
Found at i:8439941 original size:9 final size:9
Alignment explanation
Indices: 8439909--8439950 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 9
8439899 TGAATGTGAA
8439909 AAAGATTTT
1 AAAGATTTT
* *
8439918 -AACATCTTC
1 AAAGAT-TTT
8439927 AAAGATTTT
1 AAAGATTTT
8439936 AAAGATTTT
1 AAAGATTTT
8439945 AAAGAT
1 AAAGAT
8439951 ATCCACTCTA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
8 4 0.15
9 19 0.70
10 4 0.15
ACGTcount: A:0.45, C:0.07, G:0.10, T:0.38
Consensus pattern (9 bp):
AAAGATTTT
Found at i:8440942 original size:23 final size:23
Alignment explanation
Indices: 8440916--8440971 Score: 60
Period size: 24 Copynumber: 2.4 Consensus size: 23
8440906 CTCTTCATCA
8440916 TTTCCTTTTTGT-ACGGGCCTTCT
1 TTTCCTTTTTGTGA-GGGCCTTCT
* *
8440939 TTTCACTTTTTTTGAGTGCCTTCT
1 TTTC-CTTTTTGTGAGGGCCTTCT
*
8440963 TTTCATTTT
1 TTTCCTTTT
8440972 CTATTTTCTG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
23 8 0.29
24 19 0.68
25 1 0.04
ACGTcount: A:0.07, C:0.21, G:0.12, T:0.59
Consensus pattern (23 bp):
TTTCCTTTTTGTGAGGGCCTTCT
Found at i:8441612 original size:2 final size:2
Alignment explanation
Indices: 8441605--8441642 Score: 60
Period size: 2 Copynumber: 19.5 Consensus size: 2
8441595 TGATTGGACA
*
8441605 AT AT AT AT AT AT AT AT TT AT AT AT AT AT AT AT A- AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8441643 AGAAAAATGT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8442307 original size:5 final size:5
Alignment explanation
Indices: 8442291--8442325 Score: 52
Period size: 5 Copynumber: 6.8 Consensus size: 5
8442281 TAAAAAAATT
*
8442291 TTTAA TTTTAA TTTAA TTTAA TTTAA TTTTA TTTA
1 TTTAA -TTTAA TTTAA TTTAA TTTAA TTTAA TTTA
8442326 TTTTCAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
5 22 0.81
6 5 0.19
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (5 bp):
TTTAA
Found at i:8442315 original size:15 final size:16
Alignment explanation
Indices: 8442291--8442329 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 16
8442281 TAAAAAAATT
8442291 TTTAATTTTAATTTAA
1 TTTAATTTTAATTTAA
*
8442307 TTTAA-TTTAATTTTA
1 TTTAATTTTAATTTAA
8442322 TTT-ATTTT
1 TTTAATTTT
8442330 CAAAAAAAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 1 0.05
15 15 0.71
16 5 0.24
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (16 bp):
TTTAATTTTAATTTAA
Found at i:8444410 original size:18 final size:16
Alignment explanation
Indices: 8444379--8444420 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
8444369 ACCCTTTATG
8444379 TTATTTTTTATATATA
1 TTATTTTTTATATATA
* *
8444395 TTATTCTTTGTATATA
1 TTATTTTTTATATATA
*
8444411 TAATTTTTTA
1 TTATTTTTTA
8444421 CTAACCTTTT
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (16 bp):
TTATTTTTTATATATA
Found at i:8447277 original size:28 final size:27
Alignment explanation
Indices: 8447216--8447278 Score: 65
Period size: 28 Copynumber: 2.3 Consensus size: 27
8447206 AAAAAGGTGT
**
8447216 GAAAAAAAAACAAAAAATTAAAAACAA
1 GAAAAAAAAACAAAAAACAAAAAACAA
* *
8447243 -AACAAAACAAACAAAAAGCAAAAAATAA
1 GAA-AAAA-AAACAAAAAACAAAAAACAA
8447271 GAAAAAAA
1 GAAAAAAA
8447279 GAATACTTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
26 2 0.07
27 5 0.17
28 20 0.69
29 2 0.07
ACGTcount: A:0.81, C:0.10, G:0.05, T:0.05
Consensus pattern (27 bp):
GAAAAAAAAACAAAAAACAAAAAACAA
Found at i:8448394 original size:17 final size:17
Alignment explanation
Indices: 8448372--8448404 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
8448362 TACAAGCTTG
8448372 AAAATTCTTGCAAAACA
1 AAAATTCTTGCAAAACA
8448389 AAAATTCTTGCAAAAC
1 AAAATTCTTGCAAAAC
8448405 TTAGAATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.52, C:0.18, G:0.06, T:0.24
Consensus pattern (17 bp):
AAAATTCTTGCAAAACA
Found at i:8448846 original size:67 final size:65
Alignment explanation
Indices: 8448682--8448919 Score: 183
Period size: 66 Copynumber: 3.6 Consensus size: 65
8448672 CGATCACTTG
* * * * * *
8448682 TTTCGATCTCAACTGAATTTAAATCATTTTATTTTTTTAGAACTACGATTTAATCTCAGTCATTC
1 TTTCGATCTCGACTCAATCTAGATCATTTTA-TTTTTCAGAACTACGATTTAATCCCAGTCATTC
8448747 A
65 A
* * * *
8448748 TTTCGATCTCGACTTAATCTAGATCTTTTTATTTTTCAGACCCTACGATTTAATCCC-GATCGTT
1 TTTCGATCTCGACTCAATCTAGATCATTTTATTTTTCAGA-ACTACGATTTAATCCCAG-TCATT
8448812 CA
64 CA
* * ** ** * * *** *
8448814 GTTTCGATCTTGGCTCCGTCTAGATCATTTTATTTTTTTGACCTGCG-TTTCAATCTTGGTCACT
1 -TTTCGATCTCGACTCAATCTAGATCATTTTATTTTTCAGAACTACGATTT-AATCCCAGTCATT
8448878 CA
64 CA
* * * *
8448880 TTTTGATCTTGACTCAATTTATATCATTTTATTTTTCAGA
1 TTTCGATCTCGACTCAATCTAGATCATTTTATTTTTCAGA
8448920 CCCGCAATTC
Statistics
Matches: 137, Mismatches: 30, Indels: 11
0.77 0.17 0.06
Matches are distributed among these distances:
65 44 0.32
66 60 0.44
67 33 0.24
ACGTcount: A:0.23, C:0.20, G:0.11, T:0.46
Consensus pattern (65 bp):
TTTCGATCTCGACTCAATCTAGATCATTTTATTTTTCAGAACTACGATTTAATCCCAGTCATTCA
Found at i:8448906 original size:65 final size:64
Alignment explanation
Indices: 8448616--8449182 Score: 302
Period size: 65 Copynumber: 8.7 Consensus size: 64
8448606 CAATCTCTTA
* * * * * *
8448616 GTTTCGATCTCGGCTCAGTCCAAATCATTTTATTTTTTAGA-CTCGCGATTCAAT-TTCGATCAC
1 GTTTTGATCTCGACTCAATCTAGATCATTTTATTTTTTAGACCT-GCG-TTCAATCCT-GATCAC
*
8448679 TT
63 TC
* * * * * * * * * *
8448681 GTTTCGATCTCAACTGAATTTAAATCATTTTATTTTTTTAGAACTACGATTTAAT-CTCAGTCAT
1 GTTTTGATCTCGACTCAATCTAGATCATTTTA-TTTTTTAGACCTGCG-TTCAATCCTGA-TCAC
8448745 TC
63 TC
* * * * * * * * **
8448747 ATTTCGATCTCGACTTAATCTAGATCTTTTTATTTTTCAGACCCTACGATTTAATCCCGATCGTT
1 GTTTTGATCTCGACTCAATCTAGATCATTTTATTTTTTAGA-CCTGCG-TTCAATCCTGATCACT
8448812 C
64 C
* * * ** * * *
8448813 AGTTTCGATCTTGGCTCCGTCTAGATCATTTTATTTTTTTGACCTGCGTTTCAATCTTGGTCACT
1 -GTTTTGATCTCGACTCAATCTAGATCATTTTATTTTTTAGACCTGCG-TTCAATCCTGATCACT
8448878 C
64 C
* * * * * * * * ** *
8448879 ATTTTGATCTTGACTCAATTTATATCATTTTATTTTTCAGACCCGCAATTCAAACCCAATCACTT
1 GTTTTGATCTCGACTCAATCTAGATCATTTTATTTTTTAGACCTGC-GTTCAATCCTGATCACTC
* * * * * * * *
8448944 GTTTTTATCTCAACTTAGTCCAGATCA--TT-TTTTTTAGACTTGTGGTTCAATCCTGATCACTT
1 GTTTTGATCTCGACTCAATCTAGATCATTTTATTTTTTAGACCTG-CGTTCAATCCTGATCACTC
* ** * *
8449006 GTTTTAATCTCGACTCAATCTAGATCATTTTATTTTTTAGACTCACCGTTCAATCTTGGTCACTC
1 GTTTTGATCTCGACTCAATCTAGATCATTTTATTTTTTAGAC-CTGCGTTCAATCCTGATCACTC
* * * * *** * * *
8449071 TTTTTGATCTCGGCTCAATCTAAATCATTTTATTTTTTTGACCTATAATTCAACCCCGTTCACTC
1 GTTTTGATCTCGACTCAATCTAGATCATTTTATTTTTTAGACCT-GCGTTCAATCCTGATCACTC
* *
8449136 GTTTTCGA-CTCAACTCAATCTAGATCATTTTTATTTTTTTGACCTGC
1 GTTTT-GATCTCGACTCAATCTAGATCA-TTTTATTTTTTAGACCTGC
8449183 AATTTATCCC
Statistics
Matches: 382, Mismatches: 105, Indels: 30
0.74 0.20 0.06
Matches are distributed among these distances:
62 46 0.12
63 2 0.01
64 3 0.01
65 195 0.51
66 100 0.26
67 36 0.09
ACGTcount: A:0.23, C:0.22, G:0.11, T:0.44
Consensus pattern (64 bp):
GTTTTGATCTCGACTCAATCTAGATCATTTTATTTTTTAGACCTGCGTTCAATCCTGATCACTC
Found at i:8449206 original size:65 final size:65
Alignment explanation
Indices: 8449018--8449208 Score: 163
Period size: 65 Copynumber: 2.9 Consensus size: 65
8449008 TTTAATCTCG
* * ** * ** *
8449018 ACTCAATCTAGATCATTTTATTTTTTAGA-CTCACCGTTCAATCTTGGTCACTC-TTTTTGATCT
1 ACTCAATCTAAATCATTTTATTTTTTTGACCT-ACAATTCAACCCCGGTCACTCATTTTCGA-CT
*
8449081 CG
64 CA
* * * *
8449083 GCTCAATCTAAATCATTTTATTTTTTTGACCTATAATTCAACCCCGTTCACTCGTTTTCGACTCA
1 ACTCAATCTAAATCATTTTATTTTTTTGACCTACAATTCAACCCCGGTCACTCATTTTCGACTCA
* * * * * *
8449148 ACTCAATCTAGATCATTTTTATTTTTTTGACCTGCAATT-TATCCCGGTCGCTTATTTTCGA
1 ACTCAATCTAAATCA-TTTTATTTTTTTGACCTACAATTCAACCCCGGTCACTCATTTTCGA
8449209 TCTTGGCTCG
Statistics
Matches: 101, Mismatches: 22, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
65 72 0.71
66 29 0.29
ACGTcount: A:0.23, C:0.24, G:0.10, T:0.44
Consensus pattern (65 bp):
ACTCAATCTAAATCATTTTATTTTTTTGACCTACAATTCAACCCCGGTCACTCATTTTCGACTCA
Found at i:8454361 original size:29 final size:30
Alignment explanation
Indices: 8454317--8454382 Score: 116
Period size: 29 Copynumber: 2.2 Consensus size: 30
8454307 GTTGATGTCA
8454317 GGCTTCTGATGTTTTTTATGGCATCTATCT
1 GGCTTCTGATGTTTTTTATGGCATCTATCT
*
8454347 GGCTTCTGAT-TTTTTTATGGTATCTATCT
1 GGCTTCTGATGTTTTTTATGGCATCTATCT
8454376 GGCTTCT
1 GGCTTCT
8454383 ATCTCAGACC
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
29 25 0.71
30 10 0.29
ACGTcount: A:0.12, C:0.17, G:0.20, T:0.52
Consensus pattern (30 bp):
GGCTTCTGATGTTTTTTATGGCATCTATCT
Found at i:8455946 original size:2 final size:2
Alignment explanation
Indices: 8455934--8455984 Score: 93
Period size: 2 Copynumber: 25.5 Consensus size: 2
8455924 CCTTTGCTTC
*
8455934 CT CT AT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
8455976 CT CT CT CT C
1 CT CT CT CT C
8455985 CCCAAATCAC
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.02, C:0.49, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:8460745 original size:36 final size:36
Alignment explanation
Indices: 8460698--8460769 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
8460688 TTTTTATTGC
8460698 TTAGGTATTGTTTCTCAATTTCTTTCTACAACTATA
1 TTAGGTATTGTTTCTCAATTTCTTTCTACAACTATA
8460734 TTAGGTATTGTTTCTCAATTTCTTTCTACAACTATA
1 TTAGGTATTGTTTCTCAATTTCTTTCTACAACTATA
8460770 AATGTTTTTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.25, C:0.17, G:0.08, T:0.50
Consensus pattern (36 bp):
TTAGGTATTGTTTCTCAATTTCTTTCTACAACTATA
Found at i:8461295 original size:2 final size:2
Alignment explanation
Indices: 8461288--8461324 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
8461278 TGACTGTGAG
8461288 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
8461325 TATTGTATGT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:8475224 original size:22 final size:22
Alignment explanation
Indices: 8475184--8475225 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
8475174 TGTATATTTA
* *
8475184 TATTTGTATCTATAGAATTAAG
1 TATTTGTATCCATAAAATTAAG
*
8475206 TATTTGTATCCCTAAAATTA
1 TATTTGTATCCATAAAATTA
8475226 GGACAGACAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.36, C:0.10, G:0.10, T:0.45
Consensus pattern (22 bp):
TATTTGTATCCATAAAATTAAG
Found at i:8479123 original size:22 final size:22
Alignment explanation
Indices: 8479097--8479138 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
8479087 TGTATATTTA
* *
8479097 TATTTGTATCTCTAGAATTAAG
1 TATTTGTATCCCTAAAATTAAG
8479119 TATTTGTATCCCTAAAATTA
1 TATTTGTATCCCTAAAATTA
8479139 GGATAGACAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.12, G:0.10, T:0.45
Consensus pattern (22 bp):
TATTTGTATCCCTAAAATTAAG
Found at i:8480513 original size:18 final size:18
Alignment explanation
Indices: 8480492--8480539 Score: 53
Period size: 18 Copynumber: 2.6 Consensus size: 18
8480482 AACGAAATTT
8480492 TAAA-AAAAAGGAAAAAAA
1 TAAAGAAAAA-GAAAAAAA
* *
8480510 TAAAGGAGAAGAAAAAAA
1 TAAAGAAAAAGAAAAAAA
8480528 TAAAGGAAAAAG
1 TAAA-GAAAAAG
8480540 CATATTTAAC
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 16 0.67
19 8 0.33
ACGTcount: A:0.75, C:0.00, G:0.19, T:0.06
Consensus pattern (18 bp):
TAAAGAAAAAGAAAAAAA
Found at i:8488945 original size:24 final size:21
Alignment explanation
Indices: 8488897--8488946 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 21
8488887 ATTTTAATGA
8488897 AAATATAAATAAATATTATAT
1 AAATATAAATAAATATTATAT
8488918 ---TATAAATACAAATATTGATAT
1 AAATATAAAT--AAATATT-ATAT
8488939 AAATATAA
1 AAATATAA
8488947 TCGAATCGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 9
0.72 0.00 0.28
Matches are distributed among these distances:
18 7 0.30
20 7 0.30
21 4 0.17
24 5 0.22
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (21 bp):
AAATATAAATAAATATTATAT
Found at i:8489226 original size:20 final size:21
Alignment explanation
Indices: 8489201--8489252 Score: 58
Period size: 19 Copynumber: 2.7 Consensus size: 21
8489191 TTTGAATATA
* *
8489201 TAAAAAATATATATA-AATTT
1 TAAAAAATATAAAAACAATTT
8489221 TAAAAAA-ATAAAAACAA-TT
1 TAAAAAATATAAAAACAATTT
8489240 TAAAAAA-ATAAAA
1 TAAAAAATATAAAA
8489253 TAAAATAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
19 20 0.69
20 9 0.31
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (21 bp):
TAAAAAATATAAAAACAATTT
Found at i:8490151 original size:20 final size:21
Alignment explanation
Indices: 8490126--8490172 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
8490116 ATTTTAAGGG
*
8490126 TAAAATTATA-ATTAAACTAA
1 TAAAATTATATATTAAAATAA
8490146 TAAAA-TATATATTAAAATAA
1 TAAAATTATATATTAAAATAA
*
8490166 AAAAATT
1 TAAAATT
8490173 GAATAATTTC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 4 0.17
20 18 0.78
21 1 0.04
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (21 bp):
TAAAATTATATATTAAAATAA
Found at i:8490554 original size:24 final size:25
Alignment explanation
Indices: 8490508--8490556 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 25
8490498 TAATATATTT
*
8490508 TTATTAAAAATTATATATCAATATAA
1 TTATAAAAAATTATATA-CAATATAA
*
8490534 TTATAAAAAATTATCTA-AATATA
1 TTATAAAAAATTATATACAATATA
8490557 TAAAATAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.29
26 15 0.71
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.41
Consensus pattern (25 bp):
TTATAAAAAATTATATACAATATAA
Found at i:8491405 original size:14 final size:15
Alignment explanation
Indices: 8491375--8491414 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
8491365 TTAAAAAATA
*
8491375 AAAATTTACATATTT
1 AAAATTTACAAATTT
8491390 AAAATTTA-AAATTT
1 AAAATTTACAAATTT
*
8491404 AAATTTTACAA
1 AAAATTTACAA
8491415 TATAATATGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
14 12 0.55
15 10 0.45
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (15 bp):
AAAATTTACAAATTT
Found at i:8496516 original size:29 final size:31
Alignment explanation
Indices: 8496464--8496528 Score: 80
Period size: 29 Copynumber: 2.1 Consensus size: 31
8496454 TTCAATAATT
*
8496464 TTTTATTTTTTAAAAGATGTCTAAAAATTATA
1 TTTTATTTTTT-AAAGATATCTAAAAATTATA
* *
8496496 TTTTATTTTTT-AA-ATATCTAAAATTTTTA
1 TTTTATTTTTTAAAGATATCTAAAAATTATA
8496525 TTTT
1 TTTT
8496529 TTTATATTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
29 17 0.57
30 2 0.07
32 11 0.37
ACGTcount: A:0.35, C:0.03, G:0.03, T:0.58
Consensus pattern (31 bp):
TTTTATTTTTTAAAGATATCTAAAAATTATA
Found at i:8496525 original size:24 final size:23
Alignment explanation
Indices: 8496496--8496549 Score: 72
Period size: 24 Copynumber: 2.3 Consensus size: 23
8496486 AAAAATTATA
8496496 TTTTATTTTTTAAATATCTAAAAT
1 TTTTATTTTTT-AATATCTAAAAT
* *
8496520 TTTTATTTTTTTATATTTAAAAT
1 TTTTATTTTTTAATATCTAAAAT
8496543 TATTTAT
1 T-TTTAT
8496550 ATATTTGACA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
23 11 0.41
24 16 0.59
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (23 bp):
TTTTATTTTTTAATATCTAAAAT
Found at i:8496943 original size:2 final size:2
Alignment explanation
Indices: 8496936--8496965 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
8496926 TATCGGAACC
8496936 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8496966 TATTTTTAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8501361 original size:26 final size:26
Alignment explanation
Indices: 8501325--8501376 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
8501315 GTTAAAGTAA
8501325 GTGAAATGTTGGTATATCAAAGAAAG
1 GTGAAATGTTGGTATATCAAAGAAAG
8501351 GTGAAATGTTGGTATATCAAAGAAAG
1 GTGAAATGTTGGTATATCAAAGAAAG
8501377 ACATGAATCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.42, C:0.04, G:0.27, T:0.27
Consensus pattern (26 bp):
GTGAAATGTTGGTATATCAAAGAAAG
Found at i:8516409 original size:13 final size:13
Alignment explanation
Indices: 8516391--8516416 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
8516381 TTATACGAAC
8516391 TAATAAAAAATTT
1 TAATAAAAAATTT
8516404 TAATAAAAAATTT
1 TAATAAAAAATTT
8516417 CATCTTTTGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (13 bp):
TAATAAAAAATTT
Found at i:8517844 original size:16 final size:16
Alignment explanation
Indices: 8517823--8517855 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
8517813 CGTTAACATG
8517823 TATTTATTTAATAATT
1 TATTTATTTAATAATT
*
8517839 TATTTATTTATTAATT
1 TATTTATTTAATAATT
8517855 T
1 T
8517856 TCATAAATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (16 bp):
TATTTATTTAATAATT
Found at i:8519393 original size:40 final size:40
Alignment explanation
Indices: 8519349--8519428 Score: 142
Period size: 40 Copynumber: 2.0 Consensus size: 40
8519339 CAGAAACGTT
8519349 TGAGGTAGATATCAGTAACACAAAGAAGCTTCTCGAAGGA
1 TGAGGTAGATATCAGTAACACAAAGAAGCTTCTCGAAGGA
* *
8519389 TGAGGTAGATATCAGTAGCACAAAGAAGCTTTTCGAAGGA
1 TGAGGTAGATATCAGTAACACAAAGAAGCTTCTCGAAGGA
8519429 AAGCGTGGCC
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.39, C:0.14, G:0.26, T:0.21
Consensus pattern (40 bp):
TGAGGTAGATATCAGTAACACAAAGAAGCTTCTCGAAGGA
Found at i:8521075 original size:17 final size:17
Alignment explanation
Indices: 8521053--8521086 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
8521043 TCGATGATGT
8521053 CCGTACAACTCATTTGC
1 CCGTACAACTCATTTGC
8521070 CCGTACAACTCATTTGC
1 CCGTACAACTCATTTGC
8521087 TTAGACCTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.24, C:0.35, G:0.12, T:0.29
Consensus pattern (17 bp):
CCGTACAACTCATTTGC
Found at i:8521697 original size:134 final size:134
Alignment explanation
Indices: 8521457--8521707 Score: 425
Period size: 134 Copynumber: 1.9 Consensus size: 134
8521447 ATAAAGTAGG
* *
8521457 AAATTTAGTTATTTAATATTAAAAGAGTAAAATCATTCATTTTTCTGTTGATAAAGGTTAAATTT
1 AAATTTAGTTATTCAATATTAAAAGAGTAAAATCATTCATTTTACTGTTGATAAAGGTTAAATTT
*
8521522 GTTATTGTTTATTCTTGGAAATGTTGTTGCTTTTTTATTGGCATTTAGCAGAAATTAGTTAAAAG
66 GTTATTGTTTATTCTTGGAAATCTTGTTGCTTTTTTATTGGCATTTAGCAGAAATTAGTTAAAAG
8521587 AGTA
131 AGTA
*
8521591 AAATTTAGTTATTCAATGTTAAAAGAGTAAAATCATTCATTTTACTGTTGA-AAGAGGTTAAATT
1 AAATTTAGTTATTCAATATTAAAAGAGTAAAATCATTCATTTTACTGTTGATAA-AGGTTAAATT
*
8521655 TGTTATTGTTTATTCTTGGAAATCTTGTTGCTTTTGTT-TTGGCATTTGGCAGA
65 TGTTATTGTTTATTCTTGGAAATCTTGTTGCTTTT-TTATTGGCATTTAGCAGA
8521708 CTCCCTTCTC
Statistics
Matches: 110, Mismatches: 5, Indels: 4
0.92 0.04 0.03
Matches are distributed among these distances:
133 2 0.02
134 106 0.96
135 2 0.02
ACGTcount: A:0.31, C:0.06, G:0.17, T:0.45
Consensus pattern (134 bp):
AAATTTAGTTATTCAATATTAAAAGAGTAAAATCATTCATTTTACTGTTGATAAAGGTTAAATTT
GTTATTGTTTATTCTTGGAAATCTTGTTGCTTTTTTATTGGCATTTAGCAGAAATTAGTTAAAAG
AGTA
Found at i:8535537 original size:256 final size:240
Alignment explanation
Indices: 8535128--8535825 Score: 712
Period size: 232 Copynumber: 2.9 Consensus size: 240
8535118 TGTTGTGATA
* ** * *
8535128 TTTA-TATATATATATATATTTCATATTTGTTTTTGTG-AATATAATTTAAAAATCGAAGATAAT
1 TTTAGTATTTATATATATATTTTTTATAT-TTTTTGTGAAATAT-ATTT-AAAATTGAAGATAAT
* * ** *
8535191 ATAATA-ATTATTTATAAAATATATTAAAGATGTTAAATAATAAATTTAAAAGTTATGATAAATT
63 -TAA-AGATTATTTATAAAAAATATTAAAGATATTAAATAATATTTTTAAAAGTTGTGATAAATT
* * * *
8535255 TAAATACTCATATTAATTACAGATAAATTAGAAAAGATAAGTAATTACTTTAAAATTAATTTTAA
126 TAAATACTCATGTTAATTATAGATAAATTAGAAAAGAT-A--AATTACTTTAAAACTGATTTTAA
* *
8535320 ATTGAGATGATATTATGTACTAAGAGAAACTTGATGTACAGGAAAAAATTTTATGAAGTTGT
188 ATTGAGATGAGATGATGTA-TAAGAGAAAC-T--T-T-CAGG---AAATTTTATGAAGTTGT
8535382 TTTAGTATTTATATATATATTTTTTATATTTCCTTTGTGAAATATATTTAAACATTGAAGATAAT
1 TTTAGTATTTATATATATATTTTTTATATTT--TTTGTGAAATATATTTAAA-ATTGAAGATAAT
*
8535447 GTAAAGATTATTTATAAAAAATATTAAAGCTATTAAATAATATTTTTAAAAGTTGTGATAAATTT
63 -TAAAGATTATTTATAAAAAATATTAAAGATATTAAATAATATTTTTAAAAGTTGTGATAAATTT
* * *
8535512 AAATACTCATGTTAATTATAGATAAATTA-AAAAAATAAATTACTTTAAAACTGATTATAAATTA
127 AAATACTCATGTTAATTATAGATAAATTAGAAAAGATAAATTACTTTAAAACTGATTTTAAATTG
* * * ** *
8535576 AGACGAGGTGATGTATAGGAGAAACTTTCCTGAAGTTGTTAT--AG-TG-
192 AGATGAGATGATGTATAAGAGAAACTTTCAGGAAATT-TTATGAAGTTGT
* * * *
8535622 TTTA-TATTT-T-T-T-TCTTTTTT-T-TTTTTGGGTGAAATATATTTAAAAGCTGAAAATAA-T
1 TTTAGTATTTATATATATATTTTTTATATTTTT-TGTGAAATATATTTAAAA-TTGAAGATAATT
* *
8535679 ACAAGATTTATTTATAAAAAATATTAAAGATATTAAATAATATTTTTAAAAGTTGTAATAAATGT
64 A-AAGA-TTATTTATAAAAAATATTAAAGATATTAAATAATATTTTTAAAAGTTGTGATAAATTT
* *
8535744 AAATACTCATGTTAA-CATTAGATAAATTAGAAAAGATAAATAACTTTAAAACTGATTTTAAATT
127 AAATACTCATGTTAATTA-TAGATAAATTAGAAAAGATAAATTACTTTAAAACTGATTTTAAATT
8535808 GAGATGA-AGTGATGTATA
191 GAGATGAGA-TGATGTATA
8535826 GGAAAAAGAA
Statistics
Matches: 389, Mismatches: 41, Indels: 49
0.81 0.09 0.10
Matches are distributed among these distances:
230 2 0.01
231 8 0.02
232 105 0.27
233 48 0.12
234 1 0.00
235 7 0.02
236 1 0.00
237 1 0.00
238 1 0.00
239 5 0.01
240 4 0.01
241 2 0.01
242 2 0.01
243 4 0.01
244 4 0.01
246 2 0.01
247 1 0.00
248 1 0.00
250 1 0.00
251 9 0.02
252 34 0.09
254 7 0.02
255 30 0.08
256 104 0.27
257 5 0.01
ACGTcount: A:0.44, C:0.04, G:0.11, T:0.41
Consensus pattern (240 bp):
TTTAGTATTTATATATATATTTTTTATATTTTTTGTGAAATATATTTAAAATTGAAGATAATTAA
AGATTATTTATAAAAAATATTAAAGATATTAAATAATATTTTTAAAAGTTGTGATAAATTTAAAT
ACTCATGTTAATTATAGATAAATTAGAAAAGATAAATTACTTTAAAACTGATTTTAAATTGAGAT
GAGATGATGTATAAGAGAAACTTTCAGGAAATTTTATGAAGTTGT
Found at i:8536366 original size:20 final size:21
Alignment explanation
Indices: 8536316--8536366 Score: 52
Period size: 20 Copynumber: 2.5 Consensus size: 21
8536306 GACATGTGAC
*
8536316 TTTTAAA-AAAATTTTTTAAAA
1 TTTTAAATTAAATTTTTT-AAA
**
8536337 TTTTTCATTAAATTTTTT-AA
1 TTTTAAATTAAATTTTTTAAA
8536357 TTTTAAATTA
1 TTTTAAATTA
8536367 CATAAATCTA
Statistics
Matches: 24, Mismatches: 5, Indels: 3
0.75 0.16 0.09
Matches are distributed among these distances:
20 10 0.42
21 5 0.21
22 9 0.38
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (21 bp):
TTTTAAATTAAATTTTTTAAA
Found at i:8537472 original size:16 final size:15
Alignment explanation
Indices: 8537451--8537494 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 15
8537441 TAACCGTGAA
8537451 TTAATATATTTAATAT
1 TTAATATATTTAA-AT
*
8537467 TTAATATAATTTAAGT
1 TTAATAT-ATTTAAAT
8537483 TTAATATATTTA
1 TTAATATATTTA
8537495 TTAGATAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
15 5 0.19
16 15 0.58
17 6 0.23
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (15 bp):
TTAATATATTTAAAT
Found at i:8540321 original size:2 final size:2
Alignment explanation
Indices: 8540316--8540341 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
8540306 AATCTTTTAA
8540316 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
8540342 CATTTCTTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8550001 original size:19 final size:18
Alignment explanation
Indices: 8549973--8550009 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
8549963 ATTTGCAATA
*
8549973 TTTAATTTTTTAAATTTT
1 TTTAATTTTTCAAATTTT
8549991 TTTATATTTTTCAAATTTT
1 TTTA-ATTTTTCAAATTTT
8550010 AACATTTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (18 bp):
TTTAATTTTTCAAATTTT
Found at i:8550096 original size:21 final size:21
Alignment explanation
Indices: 8550062--8550111 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
8550052 TTTTTGAAAA
* *
8550062 TTTTAAAAAATTATATAT-TT
1 TTTTAAATATTTATATATATT
8550082 TTTATAAATATTTATATATATT
1 TTT-TAAATATTTATATATATT
8550104 TTTTAAAT
1 TTTTAAAT
8550112 TTTTGGTGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
20 3 0.12
21 18 0.69
22 5 0.19
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (21 bp):
TTTTAAATATTTATATATATT
Found at i:8550472 original size:21 final size:22
Alignment explanation
Indices: 8550440--8550480 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
8550430 TTATTTTAAA
8550440 AAATTATAATATTGAAAAAAGT
1 AAATTATAATATTGAAAAAAGT
*
8550462 AAATT-TAATATTGTAAAAA
1 AAATTATAATATTGAAAAAA
8550481 TATCTAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.59, C:0.00, G:0.07, T:0.34
Consensus pattern (22 bp):
AAATTATAATATTGAAAAAAGT
Found at i:8551643 original size:3 final size:3
Alignment explanation
Indices: 8551635--8551660 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
8551625 CAACGTTCTC
8551635 TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TA
8551661 AATAAAATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:8552348 original size:36 final size:36
Alignment explanation
Indices: 8552297--8552383 Score: 120
Period size: 36 Copynumber: 2.4 Consensus size: 36
8552287 TTAATACATA
*
8552297 TTATTGATTAATTTATTATATAATAATAAAATTTAT
1 TTATTTATTAATTTATTATATAATAATAAAATTTAT
* * *
8552333 TTATTTATTAGTTTATTATATAATGATAAATTTTAT
1 TTATTTATTAATTTATTATATAATAATAAAATTTAT
8552369 TTATTATATTCAATT
1 TTATT-TATT-AATT
8552384 AAAAAATCAC
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
36 37 0.84
37 4 0.09
38 3 0.07
ACGTcount: A:0.39, C:0.01, G:0.03, T:0.56
Consensus pattern (36 bp):
TTATTTATTAATTTATTATATAATAATAAAATTTAT
Found at i:8568019 original size:17 final size:17
Alignment explanation
Indices: 8567997--8568029 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
8567987 TTTATTTTTT
8567997 AAAAATGTAA-AAAATAA
1 AAAAAT-TAATAAAATAA
8568014 AAAAATTAATAAAATA
1 AAAAATTAATAAAATA
8568030 TTAATGTGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21
Consensus pattern (17 bp):
AAAAATTAATAAAATAA
Found at i:8568048 original size:28 final size:28
Alignment explanation
Indices: 8568016--8568095 Score: 76
Period size: 29 Copynumber: 2.9 Consensus size: 28
8568006 AAAAATAAAA
* * *
8568016 AAATTAATAAAATATTAATGTGATATTT
1 AAATTAATAAATTATTAATATAATATTT
*
8568044 AAATTTTAA-AAATTTTTAATATAATATTT
1 AAA--TTAATAAATTATTAATATAATATTT
8568073 AAATT-ATAAATTTATTAAT-TAAT
1 AAATTAATAAA-TTATTAATATAAT
8568096 GAGATATTTT
Statistics
Matches: 43, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
26 1 0.02
27 9 0.21
28 10 0.23
29 19 0.44
30 4 0.09
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (28 bp):
AAATTAATAAATTATTAATATAATATTT
Found at i:8569305 original size:15 final size:14
Alignment explanation
Indices: 8569276--8569327 Score: 54
Period size: 15 Copynumber: 3.7 Consensus size: 14
8569266 TTTATTTTTT
**
8569276 TATTAATAAAGTAA
1 TATTAATAATTTAA
8569290 TATTATATAATTTAA
1 TATTA-ATAATTTAA
8569305 TA-TAA-AATTTATA
1 TATTAATAATTTA-A
8569318 TATTAATAAT
1 TATTAATAAT
8569328 ACAAAAAATA
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
12 6 0.19
13 4 0.12
14 10 0.31
15 12 0.38
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (14 bp):
TATTAATAATTTAA
Found at i:8576999 original size:18 final size:18
Alignment explanation
Indices: 8576976--8577010 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
8576966 TTTCTCATTT
*
8576976 TTTATTACTTATTTTTAA
1 TTTATTACTTAATTTTAA
*
8576994 TTTATTAGTTAATTTTA
1 TTTATTACTTAATTTTA
8577011 TTATTATTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.66
Consensus pattern (18 bp):
TTTATTACTTAATTTTAA
Found at i:8577221 original size:15 final size:15
Alignment explanation
Indices: 8577182--8577215 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
8577172 TTTTTCTTAT
8577182 TTATT-AATTTATTA
1 TTATTAAATTTATTA
8577196 TTATTAAATTTATTA
1 TTATTAAATTTATTA
8577211 TTATT
1 TTATT
8577216 TTATTTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (15 bp):
TTATTAAATTTATTA
Found at i:8582962 original size:21 final size:20
Alignment explanation
Indices: 8582938--8582985 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 20
8582928 CTTGAGTGCT
8582938 TTCTTCTTCCAATTCA-GTATA
1 TTCTTCTT-CAA-TCACGTATA
*
8582959 TTCTTGCTTCAATCACGTATT
1 TTCTT-CTTCAATCACGTATA
8582980 TTCTTC
1 TTCTTC
8582986 AGTTAGCTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
20 4 0.17
21 17 0.71
22 3 0.12
ACGTcount: A:0.19, C:0.25, G:0.06, T:0.50
Consensus pattern (20 bp):
TTCTTCTTCAATCACGTATA
Found at i:8585608 original size:9 final size:9
Alignment explanation
Indices: 8585595--8585628 Score: 59
Period size: 9 Copynumber: 3.8 Consensus size: 9
8585585 AAAAAATTAC
8585595 AAAATAAAA
1 AAAATAAAA
*
8585604 TAAATAAAA
1 AAAATAAAA
8585613 AAAATAAAA
1 AAAATAAAA
8585622 AAAATAA
1 AAAATAA
8585629 TGATTCATCT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (9 bp):
AAAATAAAA
Found at i:8585616 original size:13 final size:12
Alignment explanation
Indices: 8585583--8585625 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
8585573 ATTATTTAAC
* *
8585583 AAAAAAAATTAC
1 AAAAAAAAATAA
*
8585595 AAAATAAAATAA
1 AAAAAAAAATAA
8585607 ATAAAAAAAATAA
1 A-AAAAAAAATAA
8585620 AAAAAA
1 AAAAAA
8585626 TAATGATTCA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
12 15 0.58
13 11 0.42
ACGTcount: A:0.84, C:0.02, G:0.00, T:0.14
Consensus pattern (12 bp):
AAAAAAAAATAA
Found at i:8585757 original size:57 final size:59
Alignment explanation
Indices: 8585690--8585805 Score: 164
Period size: 58 Copynumber: 2.0 Consensus size: 59
8585680 TGCTTTTGTA
* * *
8585690 CAAAGAAAATTGATACTTTCAACTTCT-CCCTAAAAATATTTTTTAAACTTTTTATTTT
1 CAAAGAAAATTGATACTTTCAACTTCTCCCCCAAAAATATTTTTGAAAATTTTTATTTT
* * *
8585748 CAAA-AAAATTGATACTTTCAACTTTTCCCCCCAAAATGTTTTTGAAAATTTTTATTTT
1 CAAAGAAAATTGATACTTTCAACTTCTCCCCCAAAAATATTTTTGAAAATTTTTATTTT
8585806 AGAAACTTTA
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
57 21 0.41
58 30 0.59
ACGTcount: A:0.35, C:0.16, G:0.04, T:0.44
Consensus pattern (59 bp):
CAAAGAAAATTGATACTTTCAACTTCTCCCCCAAAAATATTTTTGAAAATTTTTATTTT
Found at i:8585873 original size:73 final size:73
Alignment explanation
Indices: 8585740--8585879 Score: 176
Period size: 72 Copynumber: 1.9 Consensus size: 73
8585730 TTTTAAACTT
* *
8585740 TTTATTTTCAAAAAAATTGATACTTTCAACTTTTCCCCCCAAAATGTTTTTGAAA-ATTTTTATT
1 TTTATTTTCAAAAAAATTGATACTTTCAACTTTTCCCCCAAAAATATTTTTGAAATATTTTTATT
8585804 TTAGAAAC
66 TTAGAAAC
* * * * * *
8585812 TTTATTTTTAAGAAAAATTGATACTTTTAACTTTT-TCCTAAAAATATTTTTTAAACTTTTTTTA
1 TTTATTTTCAA-AAAAATTGATACTTTCAACTTTTCCCCCAAAAATATTTTTGAAA-TATTTTTA
8585876 TTTT
64 TTTT
8585880 CAAAGAAATT
Statistics
Matches: 57, Mismatches: 8, Indels: 4
0.83 0.12 0.06
Matches are distributed among these distances:
72 25 0.44
73 22 0.39
74 10 0.18
ACGTcount: A:0.34, C:0.11, G:0.04, T:0.51
Consensus pattern (73 bp):
TTTATTTTCAAAAAAATTGATACTTTCAACTTTTCCCCCAAAAATATTTTTGAAATATTTTTATT
TTAGAAAC
Found at i:8585897 original size:59 final size:59
Alignment explanation
Indices: 8585812--8585983 Score: 177
Period size: 61 Copynumber: 2.8 Consensus size: 59
8585802 TTTTAGAAAC
* * * *****
8585812 TTTATTTTTAAGAAAAATTGATACTTTTAACTTTTTCCTAAAAATATTTTTT-AAACTTTT
1 TTTATTTTCAA-AGAAATTGATACTTTCAAC-TTTTCCTAAAAATATTTTTTAAAAAAAAA
*
8585872 TTTATTTTCAAAGAAATTGATACTTTCAACTTTCCCTTAAAAATATTTTTTTAAAAAAAAA
1 TTTATTTTCAAAGAAATTGATACTTTCAACTTTTCC-TAAAAATA-TTTTTTAAAAAAAAA
* *
8585933 ATTATTTTC-AAGAAAATTGATACTTTCAACTTTTCCTCAAAAATTTTTTTT
1 TTTATTTTCAAAG-AAATTGATACTTTCAACTTTTCCT-AAAAATATTTTTT
8585984 TGGAATTTTT
Statistics
Matches: 95, Mismatches: 12, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
58 5 0.05
59 25 0.26
60 26 0.27
61 39 0.41
ACGTcount: A:0.37, C:0.11, G:0.03, T:0.48
Consensus pattern (59 bp):
TTTATTTTCAAAGAAATTGATACTTTCAACTTTTCCTAAAAATATTTTTTAAAAAAAAA
Found at i:8586023 original size:11 final size:11
Alignment explanation
Indices: 8586009--8586041 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
8585999 TAAAAATCAT
8586009 TAAAAATAAAA
1 TAAAAATAAAA
8586020 TAAAAATAAAA
1 TAAAAATAAAA
*
8586031 TAAAAACAAAA
1 TAAAAATAAAA
8586042 ATTAAAGAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.82, C:0.03, G:0.00, T:0.15
Consensus pattern (11 bp):
TAAAAATAAAA
Found at i:8586852 original size:17 final size:17
Alignment explanation
Indices: 8586826--8586864 Score: 71
Period size: 16 Copynumber: 2.4 Consensus size: 17
8586816 ATCTCCTAAT
8586826 TAATAAAAAAATGATAA
1 TAATAAAAAAATGATAA
8586843 -AATAAAAAAATGATAA
1 TAATAAAAAAATGATAA
8586859 TAATAA
1 TAATAA
8586865 TAATAATAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 16 0.76
17 5 0.24
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (17 bp):
TAATAAAAAAATGATAA
Found at i:8586861 original size:3 final size:3
Alignment explanation
Indices: 8586826--8586949 Score: 79
Period size: 3 Copynumber: 43.7 Consensus size: 3
8586816 ATCTCCTAAT
* * * *
8586826 TAA TAA -AA AAA TGA TAA -AA TAA -AA AAA TGA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * *
8586871 TAA -AA TAA TAA GTAA TAA -AT TGGAA -AG GAA -AA TAA TAA TAA TAC
1 TAA TAA TAA TAA -TAA TAA TAA T--AA TAA TAA TAA TAA TAA TAA TAA
8586915 TAA TAA TAA TAA TAA TAA TAA -AA TAA -AA TAA -AA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
8586950 TGTGGGCTTA
Statistics
Matches: 96, Mismatches: 12, Indels: 26
0.72 0.09 0.19
Matches are distributed among these distances:
2 18 0.19
3 74 0.77
4 3 0.03
5 1 0.01
ACGTcount: A:0.68, C:0.01, G:0.06, T:0.26
Consensus pattern (3 bp):
TAA
Found at i:8587761 original size:19 final size:20
Alignment explanation
Indices: 8587719--8587762 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
8587709 CTAGCATTCT
* * *
8587719 TAAAAGTTATTAAATTAAAT
1 TAAAAATTATTAAATAAAAA
8587739 TAAAAATTA-TAAATAAAAA
1 TAAAAATTATTAAATAAAAA
8587758 TAAAA
1 TAAAA
8587763 TATCATATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 13 0.62
20 8 0.38
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (20 bp):
TAAAAATTATTAAATAAAAA
Found at i:8595884 original size:3 final size:3
Alignment explanation
Indices: 8595878--8595940 Score: 126
Period size: 3 Copynumber: 21.0 Consensus size: 3
8595868 CAAAAAGATG
8595878 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
8595926 ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA
8595941 TTGAAATGAT
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 60 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:8597283 original size:14 final size:12
Alignment explanation
Indices: 8597242--8597287 Score: 53
Period size: 14 Copynumber: 3.9 Consensus size: 12
8597232 TTGAAATTTT
8597242 TAATTAAAA--A
1 TAATTAAAATTA
8597252 TAATT-AAATTA
1 TAATTAAAATTA
8597263 TAATTAAAATTGA
1 TAATTAAAATT-A
8597276 TAAATTAAAATT
1 T-AATTAAAATT
8597288 TTTTGTTATA
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
9 3 0.10
10 5 0.16
11 6 0.19
12 5 0.16
13 2 0.06
14 10 0.32
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (12 bp):
TAATTAAAATTA
Found at i:8599562 original size:61 final size:61
Alignment explanation
Indices: 8599492--8599607 Score: 137
Period size: 61 Copynumber: 1.9 Consensus size: 61
8599482 TAGTAAAAAT
* *
8599492 CTCATAAATTCTCATCATAAATAAT-AGAATTATAAAATACATAAAA-TATAGTAAATTCAAA
1 CTCACAAATTCTCACCATAAATAATGA-AATTATAAAATACATAAAACT-TAGTAAATTCAAA
* * * * *
8599553 CTCACAAATTCTTACCATAGATGATGAAATTATGAAATATATAAAACTTAGTAAA
1 CTCACAAATTCTCACCATAAATAATGAAATTATAAAATACATAAAACTTAGTAAA
8599608 CTAAAATTCA
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
61 44 0.96
62 2 0.04
ACGTcount: A:0.51, C:0.12, G:0.06, T:0.31
Consensus pattern (61 bp):
CTCACAAATTCTCACCATAAATAATGAAATTATAAAATACATAAAACTTAGTAAATTCAAA
Found at i:8599882 original size:15 final size:15
Alignment explanation
Indices: 8599862--8599909 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
8599852 TAAATCTCAT
8599862 AAAATAATATATTTA
1 AAAATAATATATTTA
*
8599877 AAAATAATA-ATATA
1 AAAATAATATATTTA
*
8599891 AAAATGAAT-TAATTA
1 AAAAT-AATATATTTA
8599906 AAAA
1 AAAA
8599910 AGATAATATT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
14 9 0.32
15 19 0.68
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (15 bp):
AAAATAATATATTTA
Found at i:8603105 original size:117 final size:117
Alignment explanation
Indices: 8602899--8603341 Score: 715
Period size: 117 Copynumber: 3.8 Consensus size: 117
8602889 GCCAGAACTA
* *
8602899 GATGCGCCCGAATCTGGTTCCAACCAGTCACCCATCTGCCTGAGGTCGATCCGTCAGAAGGGACT
1 GATGCGCCCGAATCTGGTTCCAACCAGTCACCCACCTGCCTGAGGTCGATCCGTCGGAAGGGACT
* *
8602964 ACGCCCAGAACTGGATGCTCCCAAATCTGATTCCAACAAGACCCCCAGTCTG
66 ACGCCCAGAACTGGATGCGCCCAAATCTGGTTCCAACAAGACCCCCAGTCTG
* *
8603016 GATGCGCCCGAATCTGGTTCCAACCAGTCACCCACCTGCTTGAGGTCAATCCGTCGGAAGGGACT
1 GATGCGCCCGAATCTGGTTCCAACCAGTCACCCACCTGCCTGAGGTCGATCCGTCGGAAGGGACT
*
8603081 ACGTCCAGAACTGGATGCGCCCAAATCTGGTTCCAACAAGACCCCCAGTCTG
66 ACGCCCAGAACTGGATGCGCCCAAATCTGGTTCCAACAAGACCCCCAGTCTG
* * * * * *
8603133 CATGCTCCCTAATCTGGTTCCAACCAGTCTCCCACCTGCCTGAGGTCGATCCGTCGAAAGGGATT
1 GATGCGCCCGAATCTGGTTCCAACCAGTCACCCACCTGCCTGAGGTCGATCCGTCGGAAGGGACT
*
8603198 ACGCCCAGAATTGGATGCGCCCAAATCTGGTTCCAACAAGACCCCCAGTCTG
66 ACGCCCAGAACTGGATGCGCCCAAATCTGGTTCCAACAAGACCCCCAGTCTG
* *
8603250 GATGCGTCCGAATCTGGTTCCAACCAGTCACCCACCTGCCTAAGGTCGATCCGTCGGAAGGGACT
1 GATGCGCCCGAATCTGGTTCCAACCAGTCACCCACCTGCCTGAGGTCGATCCGTCGGAAGGGACT
* * *
8603315 ACGCCTAGAATTGGATGTGCCCAAATC
66 ACGCCCAGAACTGGATGCGCCCAAATC
8603342 AATTAGTAAA
Statistics
Matches: 299, Mismatches: 27, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
117 299 1.00
ACGTcount: A:0.24, C:0.33, G:0.23, T:0.20
Consensus pattern (117 bp):
GATGCGCCCGAATCTGGTTCCAACCAGTCACCCACCTGCCTGAGGTCGATCCGTCGGAAGGGACT
ACGCCCAGAACTGGATGCGCCCAAATCTGGTTCCAACAAGACCCCCAGTCTG
Found at i:8606162 original size:22 final size:23
Alignment explanation
Indices: 8606111--8606171 Score: 70
Period size: 22 Copynumber: 2.6 Consensus size: 23
8606101 AAATAAAAAA
*
8606111 TTAGTTTAAAATTGTATTATTTAAT
1 TTAGTTT-AAATT-AATTATTTAAT
*
8606136 TTAGTTTAAATTAATT-TTTTAT
1 TTAGTTTAAATTAATTATTTAAT
*
8606158 TTAGTTTGAATTAA
1 TTAGTTTAAATTAA
8606172 ATTTAGATAT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
22 18 0.55
23 3 0.09
24 5 0.15
25 7 0.21
ACGTcount: A:0.34, C:0.00, G:0.08, T:0.57
Consensus pattern (23 bp):
TTAGTTTAAATTAATTATTTAAT
Found at i:8606356 original size:17 final size:17
Alignment explanation
Indices: 8606277--8606357 Score: 67
Period size: 17 Copynumber: 4.8 Consensus size: 17
8606267 TAATTTTTTA
*
8606277 TATATTTAAAAAAAATTT
1 TATA-TTAAAATAAATTT
* *
8606295 TAAAATAAAATAATATTT
1 TATATTAAAATAA-ATTT
* **
8606313 TATATTTAAATTTA-TT
1 TATATTAAAATAAATTT
*
8606329 TA-ATTATAATAAATTT
1 TATATTAAAATAAATTT
8606345 TATATTAAAATAA
1 TATATTAAAATAA
8606358 TATATAAAAA
Statistics
Matches: 47, Mismatches: 13, Indels: 7
0.70 0.19 0.10
Matches are distributed among these distances:
15 7 0.15
16 8 0.17
17 17 0.36
18 15 0.32
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
TATATTAAAATAAATTT
Found at i:8607067 original size:2 final size:2
Alignment explanation
Indices: 8607060--8607085 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
8607050 AATTGATTTC
8607060 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
8607086 GGGAGAGATC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8613810 original size:5 final size:5
Alignment explanation
Indices: 8613800--8613825 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
8613790 TTTATAAAAT
8613800 TTTTA TTTTA TTTTA TTTTA TTTTA T
1 TTTTA TTTTA TTTTA TTTTA TTTTA T
8613826 AATTTTTTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTA
Found at i:8613902 original size:16 final size:15
Alignment explanation
Indices: 8613882--8613932 Score: 54
Period size: 14 Copynumber: 3.5 Consensus size: 15
8613872 AACAAATAAA
8613882 TAAATAAATAAAACC
1 TAAATAAATAAAACC
*
8613897 ATAAAT-AA-AATACC
1 -TAAATAAATAAAACC
*
8613911 -AAATAAATAAAAGC
1 TAAATAAATAAAACC
8613925 TAAATAAA
1 TAAATAAA
8613933 ATACCAAATA
Statistics
Matches: 29, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
12 4 0.14
13 2 0.07
14 9 0.31
15 9 0.31
16 5 0.17
ACGTcount: A:0.69, C:0.10, G:0.02, T:0.20
Consensus pattern (15 bp):
TAAATAAATAAAACC
Found at i:8613936 original size:27 final size:28
Alignment explanation
Indices: 8613883--8613944 Score: 108
Period size: 27 Copynumber: 2.2 Consensus size: 28
8613873 ACAAATAAAT
8613883 AAATAAATAAAACCATAAATAAAATACC
1 AAATAAATAAAACCATAAATAAAATACC
*
8613911 AAATAAATAAAAGC-TAAATAAAATACC
1 AAATAAATAAAACCATAAATAAAATACC
8613938 AAATAAA
1 AAATAAA
8613945 AGAAAATCAG
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
27 20 0.61
28 13 0.39
ACGTcount: A:0.69, C:0.11, G:0.02, T:0.18
Consensus pattern (28 bp):
AAATAAATAAAACCATAAATAAAATACC
Found at i:8614311 original size:20 final size:21
Alignment explanation
Indices: 8614273--8614311 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
8614263 ATCTTTGTTG
* *
8614273 AAAACTAGAAAACTCCCACCA
1 AAAACTAGAAAAATACCACCA
8614294 AAAACT-GAAAAATACCAC
1 AAAACTAGAAAAATACCAC
8614312 TGAAAAATAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 10 0.62
21 6 0.38
ACGTcount: A:0.56, C:0.28, G:0.05, T:0.10
Consensus pattern (21 bp):
AAAACTAGAAAAATACCACCA
Found at i:8614317 original size:20 final size:21
Alignment explanation
Indices: 8614271--8614317 Score: 51
Period size: 20 Copynumber: 2.3 Consensus size: 21
8614261 GAATCTTTGT
* *
8614271 TGAAAACTAGAAAACTCCCAC
1 TGAAAACTAGAAAAATACCAC
**
8614292 CAAAAACT-GAAAAATACCAC
1 TGAAAACTAGAAAAATACCAC
8614312 TGAAAA
1 TGAAAA
8614318 ATAATGAATT
Statistics
Matches: 20, Mismatches: 6, Indels: 1
0.74 0.22 0.04
Matches are distributed among these distances:
20 14 0.70
21 6 0.30
ACGTcount: A:0.55, C:0.23, G:0.09, T:0.13
Consensus pattern (21 bp):
TGAAAACTAGAAAAATACCAC
Found at i:8615181 original size:23 final size:23
Alignment explanation
Indices: 8615137--8615182 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
8615127 TTCCTCTTTG
*
8615137 ATATATATATATAATATGCATAT
1 ATATATATATATAATATCCATAT
* *
8615160 ATATATATATATATTGTCCATAT
1 ATATATATATATAATATCCATAT
8615183 GCCTCAATCT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.43, C:0.07, G:0.04, T:0.46
Consensus pattern (23 bp):
ATATATATATATAATATCCATAT
Found at i:8616761 original size:80 final size:80
Alignment explanation
Indices: 8616672--8616830 Score: 300
Period size: 80 Copynumber: 2.0 Consensus size: 80
8616662 TTGTTTACTA
* *
8616672 TAATGATATGTAGACCTTATAATTTGTATCATCGTATCATTTAAAATATTATATTTATGTTGTAT
1 TAATGATATGTAGACCTTATAATTTGTATCATCGAATCATTTAAAACATTATATTTATGTTGTAT
8616737 TTTATATGAAAATAC
66 TTTATATGAAAATAC
8616752 TAATGATATGTAGACCTTATAATTTGTATCATCGAATCATTTAAAACATTATATTTATGTTGTAT
1 TAATGATATGTAGACCTTATAATTTGTATCATCGAATCATTTAAAACATTATATTTATGTTGTAT
8616817 TTTATATGAAAATA
66 TTTATATGAAAATA
8616831 TTAAACATAT
Statistics
Matches: 77, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
80 77 1.00
ACGTcount: A:0.37, C:0.08, G:0.10, T:0.45
Consensus pattern (80 bp):
TAATGATATGTAGACCTTATAATTTGTATCATCGAATCATTTAAAACATTATATTTATGTTGTAT
TTTATATGAAAATAC
Found at i:8617473 original size:12 final size:12
Alignment explanation
Indices: 8617445--8617488 Score: 61
Period size: 12 Copynumber: 3.5 Consensus size: 12
8617435 AGTTCTAGTT
8617445 TAATATTAATGTAA
1 TAATATTAA--TAA
*
8617459 TAATTTTAATAA
1 TAATATTAATAA
8617471 TAATATTAATAA
1 TAATATTAATAA
8617483 TAATAT
1 TAATAT
8617489 CGATTTAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
12 20 0.71
14 8 0.29
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (12 bp):
TAATATTAATAA
Found at i:8622042 original size:23 final size:23
Alignment explanation
Indices: 8622015--8622068 Score: 99
Period size: 23 Copynumber: 2.3 Consensus size: 23
8622005 TCAAAGATAA
8622015 TATGACTCACGGCAGTTCATCCC
1 TATGACTCACGGCAGTTCATCCC
*
8622038 TATGACTCACGGTAGTTCATCCC
1 TATGACTCACGGCAGTTCATCCC
8622061 TATGACTC
1 TATGACTC
8622069 GAGTTTGATT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.22, C:0.31, G:0.17, T:0.30
Consensus pattern (23 bp):
TATGACTCACGGCAGTTCATCCC
Found at i:8631919 original size:35 final size:35
Alignment explanation
Indices: 8631806--8631922 Score: 96
Period size: 35 Copynumber: 3.4 Consensus size: 35
8631796 TAATTCAAAA
* * * *
8631806 TCGTAGTTTAATCTCGATTGTTGTTATTCTCTGAC
1 TCGTAATTTAATCTCGATTATTGTTATTCTTTAAC
* * * ** *
8631841 TCGTGATTTAATCTC-AGTCTCCTTATT-TTCAA-
1 TCGTAATTTAATCTCGATTATTGTTATTCTTTAAC
*
8631873 TCGCAATTTAATCTCGATTATTGTTATTCTTTAAC
1 TCGTAATTTAATCTCGATTATTGTTATTCTTTAAC
**
8631908 TCGTGGTTTAATCTC
1 TCGTAATTTAATCTC
8631923 AGTCTCCTTA
Statistics
Matches: 60, Mismatches: 19, Indels: 6
0.71 0.22 0.07
Matches are distributed among these distances:
32 13 0.22
33 10 0.17
34 12 0.20
35 25 0.42
ACGTcount: A:0.21, C:0.19, G:0.13, T:0.48
Consensus pattern (35 bp):
TCGTAATTTAATCTCGATTATTGTTATTCTTTAAC
Found at i:8632075 original size:34 final size:35
Alignment explanation
Indices: 8632015--8632091 Score: 111
Period size: 34 Copynumber: 2.2 Consensus size: 35
8632005 CAAGTCGTAG
8632015 TTTAATCCCGATCGTTGTTATTTTTTGACTCGTGA
1 TTTAATCCCGATCGTTGTTATTTTTTGACTCGTGA
* * *
8632050 TTTAATCTCGATC-TTTTTATTTTTTGACTTGTGA
1 TTTAATCCCGATCGTTGTTATTTTTTGACTCGTGA
*
8632084 TTCAATCC
1 TTTAATCC
8632092 AAGTTCAATC
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
34 25 0.68
35 12 0.32
ACGTcount: A:0.18, C:0.17, G:0.13, T:0.52
Consensus pattern (35 bp):
TTTAATCCCGATCGTTGTTATTTTTTGACTCGTGA
Found at i:8632096 original size:135 final size:135
Alignment explanation
Indices: 8631845--8632096 Score: 330
Period size: 136 Copynumber: 1.9 Consensus size: 135
8631835 TCTGACTCGT
* * *
8631845 GATTTAATCTCAGTCTCCTTATTTTCAATCGCAATTTAATCTCGATTATTGTTATTCTTTAACTC
1 GATTTAATCTCAGTCTCCTTACTTTCAATCGCAATTTAATCCCGATCATTGTTATTCTTTAACTC
* *
8631910 GTGGTTTAATCTCAGTCTCCTTATTTTTTATACTTGTGATTCAATCCAAGTTGGCGTTATTCTAA
66 GTGATTTAATCTCAGTCTCCTTATTTTTTAGACTTGTGATTCAATCCAAGTTGGCGTTATTCTAA
8631975 CTCAC
131 CTCAC
* * * * * * *
8631980 GATTTAATTTC-GATCTCTTTACTTTCAAGTCGTAGTTTAATCCCGATCGTTGTTATTTTTTGAC
1 GATTTAATCTCAG-TCTCCTTACTTTCAA-TCGCAATTTAATCCCGATCATTGTTATTCTTTAAC
**
8632044 TCGTGATTTAATCTC-GATCTTTTTATTTTTT-GACTTGTGATTCAATCCAAGTT
64 TCGTGATTTAATCTCAG-TCTCCTTATTTTTTAGACTTGTGATTCAATCCAAGTT
8632097 CAATCCTTAT
Statistics
Matches: 100, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
134 1 0.01
135 45 0.45
136 54 0.54
ACGTcount: A:0.22, C:0.18, G:0.12, T:0.48
Consensus pattern (135 bp):
GATTTAATCTCAGTCTCCTTACTTTCAATCGCAATTTAATCCCGATCATTGTTATTCTTTAACTC
GTGATTTAATCTCAGTCTCCTTATTTTTTAGACTTGTGATTCAATCCAAGTTGGCGTTATTCTAA
CTCAC
Found at i:8632414 original size:15 final size:15
Alignment explanation
Indices: 8632391--8632434 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
8632381 AGTTCTAGTT
*
8632391 TAATATTAATAGTAA
1 TAATATTAATAATAA
8632406 TAAT-TT--TAATAA
1 TAATATTAATAATAA
8632418 TAATATTAATAATAA
1 TAATATTAATAATAA
8632433 TA
1 TA
8632435 TCGATTTAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
12 9 0.36
13 2 0.08
14 2 0.08
15 12 0.48
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (15 bp):
TAATATTAATAATAA
Found at i:8632415 original size:21 final size:21
Alignment explanation
Indices: 8632389--8632430 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
8632379 TCAGTTCTAG
*
8632389 TTTAATATTAATAGTAATAAT
1 TTTAATAATAATAGTAATAAT
*
8632410 TTTAATAATAATATTAATAAT
1 TTTAATAATAATAGTAATAAT
8632431 AATATCGATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (21 bp):
TTTAATAATAATAGTAATAAT
Found at i:8632418 original size:12 final size:12
Alignment explanation
Indices: 8632403--8632435 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
8632393 ATATTAATAG
*
8632403 TAATAATTTTAA
1 TAATAATATTAA
8632415 TAATAATATTAA
1 TAATAATATTAA
8632427 TAATAATAT
1 TAATAATAT
8632436 CGATTTAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (12 bp):
TAATAATATTAA
Found at i:8632615 original size:16 final size:16
Alignment explanation
Indices: 8632596--8632630 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
8632586 AACCTATGTG
*
8632596 ACCAGACCGGACAGCC
1 ACCAGACCAGACAGCC
*
8632612 ACCAGATCAGACAGCC
1 ACCAGACCAGACAGCC
8632628 ACC
1 ACC
8632631 TCTACAGTCG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.34, C:0.43, G:0.20, T:0.03
Consensus pattern (16 bp):
ACCAGACCAGACAGCC
Found at i:8633524 original size:15 final size:16
Alignment explanation
Indices: 8633506--8633553 Score: 62
Period size: 15 Copynumber: 2.9 Consensus size: 16
8633496 GAATTTTTGA
8633506 ATTTTTTTATATATT-
1 ATTTTTTTATATATTG
*
8633521 ATTTTTTTATTATTTTG
1 ATTTTTTTA-TATATTG
8633538 AGTTTTTTTATATATT
1 A-TTTTTTTATATATT
8633554 TATGCATGAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
15 9 0.32
16 5 0.18
17 6 0.21
18 8 0.29
ACGTcount: A:0.23, C:0.00, G:0.04, T:0.73
Consensus pattern (16 bp):
ATTTTTTTATATATTG
Found at i:8633543 original size:18 final size:17
Alignment explanation
Indices: 8633500--8633554 Score: 60
Period size: 15 Copynumber: 3.2 Consensus size: 17
8633490 TTTTTTGAAT
8633500 TTTTGAATTTTTTTA-TA
1 TTTTG-ATTTTTTTATTA
*
8633517 TATT-ATTTTTTTATTA
1 TTTTGATTTTTTTATTA
8633533 TTTTGAGTTTTTTTATATA
1 TTTTGA-TTTTTTTAT-TA
8633552 TTT
1 TTT
8633555 ATGCATGATA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
15 9 0.28
16 5 0.16
17 4 0.12
18 9 0.28
19 5 0.16
ACGTcount: A:0.22, C:0.00, G:0.05, T:0.73
Consensus pattern (17 bp):
TTTTGATTTTTTTATTA
Found at i:8634125 original size:15 final size:15
Alignment explanation
Indices: 8634078--8634126 Score: 59
Period size: 15 Copynumber: 3.3 Consensus size: 15
8634068 CTGAAACCCT
8634078 AAAATCC-AAAATTC
1 AAAATCCTAAAATTC
8634092 AAAATCCTAAAA-TC
1 AAAATCCTAAAATTC
8634106 TAAAA-CCTTAAAATTC
1 -AAAATCC-TAAAATTC
8634122 AAAAT
1 AAAAT
8634127 TTTGAAAACC
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
14 11 0.37
15 17 0.57
16 2 0.07
ACGTcount: A:0.57, C:0.18, G:0.00, T:0.24
Consensus pattern (15 bp):
AAAATCCTAAAATTC
Found at i:8634389 original size:14 final size:15
Alignment explanation
Indices: 8634372--8634400 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
8634362 ATTATTGTTT
8634372 AATAATAA-AAAATG
1 AATAATAATAAAATG
8634386 AATAATAATAAAATG
1 AATAATAATAAAATG
8634401 GGATCTTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.69, C:0.00, G:0.07, T:0.24
Consensus pattern (15 bp):
AATAATAATAAAATG
Found at i:8635434 original size:16 final size:16
Alignment explanation
Indices: 8635413--8635449 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
8635403 TTATTCGTTT
8635413 TGATTCAAAAATTTTA
1 TGATTCAAAAATTTTA
8635429 TGATTCAAAAATTTTA
1 TGATTCAAAAATTTTA
8635445 TGATT
1 TGATT
8635450 TTATCTAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.41, C:0.05, G:0.08, T:0.46
Consensus pattern (16 bp):
TGATTCAAAAATTTTA
Found at i:8642477 original size:20 final size:20
Alignment explanation
Indices: 8642452--8642517 Score: 89
Period size: 21 Copynumber: 3.2 Consensus size: 20
8642442 TATGAAATTA
8642452 ATAAAATATTATTTTTAAAT
1 ATAAAATATTATTTTTAAAT
* *
8642472 ATAAAATGTTGTTTTTTAAAT
1 ATAAAATATT-ATTTTTAAAT
8642493 ATAAAATTATTATTTTT-AAT
1 ATAAAA-TATTATTTTTAAAT
8642513 ATAAA
1 ATAAA
8642518 TATAAATTAT
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
20 17 0.43
21 20 0.50
22 3 0.08
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (20 bp):
ATAAAATATTATTTTTAAAT
Found at i:8642550 original size:8 final size:9
Alignment explanation
Indices: 8642516--8642557 Score: 52
Period size: 8 Copynumber: 4.8 Consensus size: 9
8642506 TTTTAATATA
8642516 AATATAAAT
1 AATATAAAT
*
8642525 TATATAAAT
1 AATATAAAT
8642534 ATATATAAAT
1 A-ATATAAAT
8642544 AAT-TAAAT
1 AATATAAAT
8642552 AA-ATAA
1 AATATAA
8642558 TTATATATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
8 10 0.34
9 10 0.34
10 9 0.31
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (9 bp):
AATATAAAT
Found at i:8642563 original size:26 final size:25
Alignment explanation
Indices: 8642511--8642566 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 25
8642501 ATTATTTTTA
*
8642511 ATATAAATATAAATTATATAAATAT
1 ATATAAATATAAATTAAATAAATAT
*
8642536 ATATAAATAATTAAA-TAAATAATTAT
1 ATATAAAT-A-TAAATTAAATAAATAT
8642562 ATATA
1 ATATA
8642567 TCAGGCCCGG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
25 8 0.30
26 15 0.56
27 4 0.15
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (25 bp):
ATATAAATATAAATTAAATAAATAT
Found at i:8645856 original size:5 final size:5
Alignment explanation
Indices: 8645846--8645870 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
8645836 TATTATGTTT
8645846 TAAAA TAAAA TAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA
8645871 AACTTGAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
TAAAA
Found at i:8646909 original size:6 final size:6
Alignment explanation
Indices: 8646898--8646923 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
8646888 CTCTGGAAAA
8646898 GGTCTG GGTCTG GGTCTG GGTCTG GG
1 GGTCTG GGTCTG GGTCTG GGTCTG GG
8646924 GATAGAGATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.00, C:0.15, G:0.54, T:0.31
Consensus pattern (6 bp):
GGTCTG
Found at i:8653420 original size:18 final size:18
Alignment explanation
Indices: 8653397--8653433 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
8653387 CTTCTCCTTT
8653397 ATAGCTTCTCCATTTTTC
1 ATAGCTTCTCCATTTTTC
8653415 ATAGCTTCTCCATTTTTC
1 ATAGCTTCTCCATTTTTC
8653433 A
1 A
8653434 GTGATGTCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.19, C:0.27, G:0.05, T:0.49
Consensus pattern (18 bp):
ATAGCTTCTCCATTTTTC
Found at i:8654195 original size:2 final size:2
Alignment explanation
Indices: 8654188--8654225 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
8654178 ATACATTGAG
8654188 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
8654226 AGAAAAAGGA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:8658513 original size:4 final size:4
Alignment explanation
Indices: 8658504--8658529 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
8658494 CAGTGATTCC
8658504 TATG TATG TATG TATG TATG TATG TA
1 TATG TATG TATG TATG TATG TATG TA
8658530 GCAATGGCAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.27, C:0.00, G:0.23, T:0.50
Consensus pattern (4 bp):
TATG
Found at i:8661326 original size:12 final size:12
Alignment explanation
Indices: 8661309--8661333 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8661299 ATGCAGCTAT
8661309 AAAGCTACATAC
1 AAAGCTACATAC
8661321 AAAGCTACATAC
1 AAAGCTACATAC
8661333 A
1 A
8661334 CAGAGATGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.24, G:0.08, T:0.16
Consensus pattern (12 bp):
AAAGCTACATAC
Found at i:8664014 original size:31 final size:30
Alignment explanation
Indices: 8663941--8664016 Score: 91
Period size: 31 Copynumber: 2.5 Consensus size: 30
8663931 TCTATTTTTA
*
8663941 TTATATCTAAATAAATTTTTAACTTTTAAT
1 TTATATCTAAATAAATCTTTAACTTTTAAT
* *
8663971 TTATAGTC-AAATAAGCTCTTTAATTTTTAAT
1 TTATA-TCTAAATAA-ATCTTTAACTTTTAAT
*
8664002 TTGTATCTAAATAAA
1 TTATATCTAAATAAA
8664017 CACTAAATAA
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
30 13 0.34
31 25 0.66
ACGTcount: A:0.39, C:0.08, G:0.04, T:0.49
Consensus pattern (30 bp):
TTATATCTAAATAAATCTTTAACTTTTAAT
Found at i:8665757 original size:11 final size:12
Alignment explanation
Indices: 8665736--8665768 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
8665726 ATATCACTAT
8665736 AATTATATTATTA
1 AATT-TATTATTA
8665749 AA-TTATTATTA
1 AATTTATTATTA
8665760 AATTTATTA
1 AATTTATTA
8665769 AAATAAATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 10 0.53
12 7 0.37
13 2 0.11
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (12 bp):
AATTTATTATTA
Found at i:8666628 original size:63 final size:62
Alignment explanation
Indices: 8666424--8666734 Score: 192
Period size: 62 Copynumber: 4.9 Consensus size: 62
8666414 TTTATCGATT
* * ** * *
8666424 AAAATACTTTAAATAATATTTTT-TAAAAAATTGAAGTGATTATTAAAAGTATTTTTTTTTACAG
1 AAAATACTTTCAATAAT-TTTTTCTAAAAAATTTAAAAGATTATTGAAGGTA--TTTTTTTACA-
8666488 A
62 A
* * ** **
8666489 AAACAT-C-TTGAATAATCTACTCATAAAAAA--TAAAAGCGATTATTGAAGGCGTTTTTTATAA
1 AAA-ATACTTTCAATAATTTTTTC-TAAAAAATTTAAAA--GATTATTGAAGGTATTTTTT-T-A
*
8666550 AAA
60 CAA
* *
8666553 AAAATACCTTCAATAATTTTTTCTAAAAAATTGTAAAAGACTATTGAA-G-ATTTTTTTGACCAA
1 AAAATACTTTCAATAATTTTTTCTAAAAAATT-TAAAAGATTATTGAAGGTATTTTTTT-A-CAA
* * * * *
8666616 AAAATACTTTCAATAATCTCTTAT-CAAAATTTAAAGGGATTATTGAAGGTATTTTTTTACAGA
1 AAAATACTTTCAATAATTTTTTCTAAAAAATTTAAA-AGATTATTGAAGGTATTTTTTTACA-A
** * *
8666679 AAACGA-TTTCAATAA-TCTTTCTAAAAAATTTAAGAAGATTATTGAATGTATTTTTT
1 AAAATACTTTCAATAATTTTTTCTAAAAAATTTAA-AAGATTATTGAAGGTATTTTTT
8666735 GTCTGAAACG
Statistics
Matches: 191, Mismatches: 36, Indels: 41
0.71 0.13 0.15
Matches are distributed among these distances:
61 7 0.04
62 56 0.29
63 48 0.25
64 30 0.16
65 43 0.23
66 2 0.01
67 5 0.03
ACGTcount: A:0.43, C:0.08, G:0.09, T:0.39
Consensus pattern (62 bp):
AAAATACTTTCAATAATTTTTTCTAAAAAATTTAAAAGATTATTGAAGGTATTTTTTTACAA
Found at i:8671048 original size:2 final size:2
Alignment explanation
Indices: 8671041--8671080 Score: 53
Period size: 2 Copynumber: 20.0 Consensus size: 2
8671031 GTGGTTGAGT
* * *
8671041 TA TA TA TA AA TA TA TA AA TA TA TA AA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8671081 GTTTATCGTC
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.42
Consensus pattern (2 bp):
TA
Found at i:8671055 original size:8 final size:8
Alignment explanation
Indices: 8671042--8671080 Score: 69
Period size: 8 Copynumber: 4.9 Consensus size: 8
8671032 TGGTTGAGTT
8671042 ATATATAA
1 ATATATAA
8671050 ATATATAA
1 ATATATAA
8671058 ATATATAA
1 ATATATAA
*
8671066 ATATATAT
1 ATATATAA
8671074 ATATATA
1 ATATATA
8671081 GTTTATCGTC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
8 30 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (8 bp):
ATATATAA
Found at i:8672281 original size:28 final size:28
Alignment explanation
Indices: 8672228--8672281 Score: 65
Period size: 28 Copynumber: 1.9 Consensus size: 28
8672218 TTATAATTAA
*
8672228 AAATTTCAATAAAATTTTTTTATAAAAT
1 AAATTTCAATAAAATTTTATTATAAAAT
* *
8672256 AAATTTTATTAAAATTATTATT-TAAA
1 AAATTTCAATAAAATT-TTATTATAAA
8672282 TTTAATTAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
28 18 0.82
29 4 0.18
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (28 bp):
AAATTTCAATAAAATTTTATTATAAAAT
Found at i:8673017 original size:2 final size:2
Alignment explanation
Indices: 8673010--8673042 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
8673000 CCCTATCTTC
8673010 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
8673043 CCTCATTTTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
CT
Found at i:8683434 original size:52 final size:52
Alignment explanation
Indices: 8683340--8683439 Score: 139
Period size: 52 Copynumber: 1.9 Consensus size: 52
8683330 TCATCTAATT
* ** *
8683340 TTTATGGTGTATTTATTAAAGGTATTTTTTTGTATAATACGCCTTCAATATA
1 TTTATGATGTATTTATTAAAGGTATTTTTTACTATAAAACGCCTTCAATATA
*
8683392 TTTATGATGTATTTATTGAAGGTATTTTTCTACTA-AAAACGCCTTCAA
1 TTTATGATGTATTTATTAAAGGTATTTTT-TACTATAAAACGCCTTCAA
8683440 CAATTTACTC
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
52 39 0.93
53 3 0.07
ACGTcount: A:0.30, C:0.10, G:0.13, T:0.47
Consensus pattern (52 bp):
TTTATGATGTATTTATTAAAGGTATTTTTTACTATAAAACGCCTTCAATATA
Found at i:8683844 original size:187 final size:180
Alignment explanation
Indices: 8683515--8683862 Score: 444
Period size: 187 Copynumber: 1.9 Consensus size: 180
8683505 GTTTTCTTTT
* * *
8683515 AAAAATTGTTTGGGATTATTAAAGGTGTCTTCTAAGAAAACACCTTTAATATTCCACTACTAAAT
1 AAAAATTATTTGAGATTATTAAAGGTGTCTTATAAGAAAACACCTTTAATATTCCACTACTAAAT
* * * ** * **
8683580 TTTAAGGGGTTATTAAAGGTGTTTATTCTAAAAAAATGCATTCACTATTTTGTTCTAATTTTTGA
66 TTTAAGGGATTATTAAAGGCGTTTATTCAAAAAAAACACATTCACTAATTCATTCTAATTTTTGA
*
8683645 AAAAAATTATTAAAGGTATTTTTTGCATTATATGTCTTTAATAATTTTTAA
131 AAAAAATTATTAAAGGTA-TTTTTACATTATATGTCTTTAATAATTTTTAA
* * **
8683696 AAAAATTATTTGAGATTATTAAAGGTGTCTTATAGTAGAAAATACTTTTAATATTTTACTACTAA
1 AAAAATTATTTGAGATTATTAAAGGTGTCTTATA--AGAAAACACCTTTAATATTCCACTACTAA
* * *
8683761 ATTTTTAAGATGATTATTAAAGGCGTTTATTCCAAAAAAAAACACATTTACTAATTCATTGTAAT
64 A-TTTTAAG-GGATTATTAAAGGCGTTTATT-C-AAAAAAAACACATTCACTAATTCATTCTAAT
* *
8683826 TTTTGAAAGAATTTATTAAAGGTATTTTTACATTATA
125 TTTTGAAAAAAATTATTAAAGGTATTTTTACATTATA
8683863 CACCTTTAAT
Statistics
Matches: 140, Mismatches: 21, Indels: 7
0.83 0.12 0.04
Matches are distributed among these distances:
181 31 0.22
183 26 0.19
184 7 0.05
185 18 0.13
186 13 0.09
187 45 0.32
ACGTcount: A:0.38, C:0.08, G:0.11, T:0.43
Consensus pattern (180 bp):
AAAAATTATTTGAGATTATTAAAGGTGTCTTATAAGAAAACACCTTTAATATTCCACTACTAAAT
TTTAAGGGATTATTAAAGGCGTTTATTCAAAAAAAACACATTCACTAATTCATTCTAATTTTTGA
AAAAAATTATTAAAGGTATTTTTACATTATATGTCTTTAATAATTTTTAA
Found at i:8683892 original size:125 final size:122
Alignment explanation
Indices: 8683742--8683976 Score: 319
Period size: 125 Copynumber: 1.9 Consensus size: 122
8683732 AGAAAATACT
* * *
8683742 TTTAATATTTTACTACTAAATTTTTAAGATGATTATTAAAGGCGTTTATTCCAAAAAAAAACACA
1 TTTAATATTTTACTACTAAAATTTTAAGACGATTATTAAAGGCATTTATT-C-AAAAAAAACAC-
* *
8683807 TTT-ACTAATTCATTGTAATTTTTGAAAGAATTTATTAAAGGTATTTTTACATTATACACC
63 TTTCACTAATTCATTCTAATTTTTGAAA-AATTTATTAAAGATATTTTTACATTATACACC
* * * * *
8683867 TTTAATATTTTACTATTAAAATTTTAAGACGATTATTAAAGGCATTTATTCTAGACAAATACTTT
1 TTTAATATTTTACTACTAAAATTTTAAGACGATTATTAAAGGCATTTATTCAAAAAAAACACTTT
* *
8683932 CACTAATTCGTTCTAATTTTTGAAAAATTTATTGAAGATATTTTT
66 CACTAATTCATTCTAATTTTTGAAAAATTTATTAAAGATATTTTT
8683977 TTGTATTATA
Statistics
Matches: 97, Mismatches: 12, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
122 21 0.22
123 29 0.30
124 1 0.01
125 46 0.47
ACGTcount: A:0.38, C:0.10, G:0.08, T:0.44
Consensus pattern (122 bp):
TTTAATATTTTACTACTAAAATTTTAAGACGATTATTAAAGGCATTTATTCAAAAAAAACACTTT
CACTAATTCATTCTAATTTTTGAAAAATTTATTAAAGATATTTTTACATTATACACC
Found at i:8684272 original size:124 final size:125
Alignment explanation
Indices: 8684109--8684352 Score: 323
Period size: 127 Copynumber: 1.9 Consensus size: 125
8684099 AAACGCATTC
* * ** * *
8684109 AATATTTCACTACTAAAATTTTAAGAAGTTTAGTAAAGGCGTTTA-TT-CCAGAAAAATGCCTTC
1 AATATTCCACTACTAAAATTTTAAGAAGGTTAGTAAAGGCGTTTATTTAAAAAAAAAATACCTTC
*
8684172 ACTAATTCGTTCTAATTTTTGAAGAAATTTATTGAAAACG-TTTTTTGCATTATACGCCTTT
66 ACTAATTCGTTCTAATTTTTGAAAAAATTTATT-AAAA-GATTTTTTGCATTATACGCCTTT
* * *
8684233 AATATTCCACTACTAAAATTTTAAGACGGTTATTGAAGGCGTTTATTTAAAAAAAAAAATACCTT
1 AATATTCCACTACTAAAATTTTAAGAAGGTTAGTAAAGGCGTTTATTT-AAAAAAAAAATACCTT
* *
8684298 CATTAATTTGTTCTAATTTTTGAAAAAATTTATTAAAAGTATTTTTTGCATTATA
65 CACTAATTCGTTCTAATTTTTGAAAAAATTTATTAAAAG-ATTTTTTGCATTATA
8684353 TACTTTCAAC
Statistics
Matches: 103, Mismatches: 12, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
124 40 0.39
125 3 0.03
126 4 0.04
127 56 0.54
ACGTcount: A:0.37, C:0.11, G:0.11, T:0.41
Consensus pattern (125 bp):
AATATTCCACTACTAAAATTTTAAGAAGGTTAGTAAAGGCGTTTATTTAAAAAAAAAATACCTTC
ACTAATTCGTTCTAATTTTTGAAAAAATTTATTAAAAGATTTTTTGCATTATACGCCTTT
Found at i:8684410 original size:366 final size:362
Alignment explanation
Indices: 8683689--8684609 Score: 1084
Period size: 366 Copynumber: 2.5 Consensus size: 362
8683679 TCTTTAATAA
* * * * *
8683689 TTTTTAAAAAAATTATTTGAGATTATTAAAGGTGTCTTATAGTAGAAAATA-CTTTTAATATTTT
1 TTTTTAAAAAAATTATTTGAGATTATTAAAGGCGTCTTCTAGT-GAAAA-ACCATTCAATATTTC
* * * * * *
8683753 ACTACTAAATTTTTAAGATGATTATTAAAGGCGTTTATTCCAAAAAAAAACACATTTACTAATTC
64 ACTACTAAAATTTTAAGAAGATTAGTAAAGGCGTTTATTCCAGAAAAAAGC-C-TTCACTAATTC
* * * * * **
8683818 ATTGTAATTTTTGAAAGAATTTATT--AAAGGTATTTTTACATTATACACCTTTAATATTTTACT
127 GTTATAATTTTTGAAAGAATTTATTGAAAACGT-TTTTTGCATTATACGCCTTTAATATTCCACT
* * * *
8683881 ATTAAAATTTTAAGACGATTATTAAAGGCATTTATTCTAGACAAATACTTTCACTAATTCGTTCT
191 ACTAAAATTTTAAGACGATTATTAAAGGCATTTATTCTAAAAAAATACCTTCACTAATTCGTTCT
* * * *
8683946 AATTTTTGAAAAATTTATTGAAGATATTTTTTTGTATTATACGCCTTCAATAATTTTTGTACAGA
256 AATTTTTGAAAAATTTATTAAAGATATTTTTTTGCATTATACACCTTCAACAATTTTTGTACAGA
*
8684011 ATTATTGAAGGTATTTTTTTAGAATAAACGCCTTCAATAATT
321 ATTATTGAAGGTATTTTTTTAGAACAAACGCCTTCAATAATT
* *
8684053 TTTTTAAAAAAATTATTTAAGATTATTAAAGGCATCTTCTAGTGAAAAACGCATTCAATATTTCA
1 TTTTTAAAAAAATTATTTGAGATTATTAAAGGCGTCTTCTAGTGAAAAAC-CATTCAATATTTCA
* *
8684118 CTACTAAAATTTTAAGAAGTTTAGTAAAGGCGTTTATTCCAGAAAAATGCCTTCACTAATTCGTT
65 CTACTAAAATTTTAAGAAGATTAGTAAAGGCGTTTATTCCAGAAAAAAGCCTTCACTAATTCGTT
*
8684183 CTAATTTTTG-AAGAAATTTATTGAAAACGTTTTTTGCATTATACGCCTTTAATATTCCACTACT
130 ATAATTTTTGAAAG-AATTTATTGAAAACGTTTTTTGCATTATACGCCTTTAATATTCCACTACT
* * * * *
8684247 AAAATTTTAAGACGGTTATTGAAGGCGTTTATT-TAAAAAAAAAAATACCTTCATTAATTTGTTC
194 AAAATTTTAAGACGATTATTAAAGGCATTTATTCT----AAAAAAATACCTTCACTAATTCGTTC
* *
8684311 TAATTTTTGAAAAAATTTATTAAA-AGTA-TTTTTTGCATTATATACTTTCAACAATTTTTGTAC
255 TAATTTTTG-AAAAATTTATTAAAGA-TATTTTTTTGCATTATACACCTTCAACAATTTTTGTAC
8684374 AGAATTATTGAAGGTATTTTTTTAGAACAAACGCCTTCAATAATT
318 AGAATTATTGAAGGTATTTTTTTAGAACAAACGCCTTCAATAATT
* * * * *
8684419 ATTTAAAAAAAATTATTTGAGATTATTAAAGACGTTTTCTAGTGAAAAACTCCTTCAATA-TTCT
1 TTTTTAAAAAAATTATTTGAGATTATTAAAGGCGTCTTCTAGTGAAAAAC-CATTCAATATTTC-
* ** * * ** * *
8684483 ACTACTAACATTTTAAGGCGGTTAGTGAAGGTATTTATTTCAGAAAAAAAGCCTTCACTAATTTG
64 ACTACTAAAATTTTAAGAAGATTAGTAAAGGCGTTTATTCCAG-AAAAAAGCCTTCACTAATTCG
* * **** *
8684548 CTATAATTTTTTAAAAGAATTTATTGAAGGTATTTTTTGCATAATACGCCTTTAATAATTCC
128 TTATAA-TTTTTGAAAGAATTTATTGAAAACGTTTTTTGCATTATACGCCTTTAAT-ATTCC
8684610 CTCTATTCTC
Statistics
Matches: 477, Mismatches: 64, Indels: 27
0.84 0.11 0.05
Matches are distributed among these distances:
361 3 0.01
362 31 0.06
363 65 0.14
364 98 0.21
365 3 0.01
366 192 0.40
367 38 0.08
368 39 0.08
369 8 0.02
ACGTcount: A:0.37, C:0.11, G:0.11, T:0.41
Consensus pattern (362 bp):
TTTTTAAAAAAATTATTTGAGATTATTAAAGGCGTCTTCTAGTGAAAAACCATTCAATATTTCAC
TACTAAAATTTTAAGAAGATTAGTAAAGGCGTTTATTCCAGAAAAAAGCCTTCACTAATTCGTTA
TAATTTTTGAAAGAATTTATTGAAAACGTTTTTTGCATTATACGCCTTTAATATTCCACTACTAA
AATTTTAAGACGATTATTAAAGGCATTTATTCTAAAAAAATACCTTCACTAATTCGTTCTAATTT
TTGAAAAATTTATTAAAGATATTTTTTTGCATTATACACCTTCAACAATTTTTGTACAGAATTAT
TGAAGGTATTTTTTTAGAACAAACGCCTTCAATAATT
Found at i:8684670 original size:20 final size:19
Alignment explanation
Indices: 8684630--8684668 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
8684620 ATCACGAGAA
8684630 TATCAGTGAAGGTAATTTT
1 TATCAGTGAAGGTAATTTT
*
8684649 TATCAGTGAAGGTGATTTT
1 TATCAGTGAAGGTAATTTT
8684668 T
1 T
8684669 TACTAAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.28, C:0.05, G:0.23, T:0.44
Consensus pattern (19 bp):
TATCAGTGAAGGTAATTTT
Found at i:8685044 original size:24 final size:28
Alignment explanation
Indices: 8684994--8685049 Score: 66
Period size: 25 Copynumber: 2.1 Consensus size: 28
8684984 CGTGCACCTC
*
8684994 TTTGTTTACCGATATATCTTTATTATT-
1 TTTGTTTACCGATATATATTTATTATTA
*
8685021 TTTGTTTA-CTATAT-TATTTA-TATTA
1 TTTGTTTACCGATATATATTTATTATTA
8685046 TTTG
1 TTTG
8685050 ATAAAGGTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
24 4 0.15
25 9 0.35
26 5 0.19
27 8 0.31
ACGTcount: A:0.23, C:0.07, G:0.07, T:0.62
Consensus pattern (28 bp):
TTTGTTTACCGATATATATTTATTATTA
Found at i:8689273 original size:178 final size:178
Alignment explanation
Indices: 8688872--8689218 Score: 444
Period size: 179 Copynumber: 1.9 Consensus size: 178
8688862 GGTATTGGCC
* * * ** *
8688872 AAAAACACCTTCAATAATCCGTTATATATTTTTTCTATGGATTATTAAAGGCATTTTTAGCAAGA
1 AAAAATACCTTCAAGAATCCATTCCATATTTTTT-TATGGATTATTAAAGGTATTTTTAGCAAGA
* *
8688937 AAACGCTTTGAATAATCCCTAACAAAATATTATTAAAGGCATTTTTAACCAAAACTGCATTCAAT
65 AAACGCCTTGAATAATCCCTAACAAAATATAATTAAAGGCATTTTTAACCAAAACTGCATTCAAT
* *
8689002 AATTTCAATTAAAAATTTATTGATTAGATTATTAAAGGCACTTTCAACA
130 AATCTCAATTAAAAATTTATTGATTAGAATATTAAAGGCACTTTCAACA
* * * *
8689051 AAAAATATCTTTAAGAATCCATTTCATATTTTTTTATGGATTATTAAAGGTGTTTTTAGCAAGAA
1 AAAAATACCTTCAAGAATCCATTCCATATTTTTTTATGGATTATTAAAGGTATTTTTAGCAAGAA
* * * * * * * * *
8689116 AATGCCTTGAGTAATCCCTAACAAAATATAATTGAAGGTATTTTTTTATCAAAATTGCCTTTAAT
66 AACGCCTTGAATAATCCCTAACAAAATATAATTAAAGGCA-TTTTTAACCAAAACTGCATTCAAT
*
8689181 AATCTC-ATCTAAAAATTTATTGTTTAGAATATTAAAGG
130 AATCTCAAT-TAAAAATTTATTGATTAGAATATTAAAGG
8689219 GGTTTGGCCA
Statistics
Matches: 143, Mismatches: 23, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
178 65 0.45
179 78 0.55
ACGTcount: A:0.39, C:0.12, G:0.10, T:0.38
Consensus pattern (178 bp):
AAAAATACCTTCAAGAATCCATTCCATATTTTTTTATGGATTATTAAAGGTATTTTTAGCAAGAA
AACGCCTTGAATAATCCCTAACAAAATATAATTAAAGGCATTTTTAACCAAAACTGCATTCAATA
ATCTCAATTAAAAATTTATTGATTAGAATATTAAAGGCACTTTCAACA
Found at i:8694564 original size:17 final size:18
Alignment explanation
Indices: 8694542--8694581 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
8694532 ATTTTTATTC
* *
8694542 ATAAAA-ATCATGATTAT
1 ATAAAATATCATAATCAT
8694559 ATAAAATATCATAATCAT
1 ATAAAATATCATAATCAT
8694577 ATAAA
1 ATAAA
8694582 TAAAATTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 6 0.30
18 14 0.70
ACGTcount: A:0.57, C:0.07, G:0.03, T:0.33
Consensus pattern (18 bp):
ATAAAATATCATAATCAT
Found at i:8700713 original size:56 final size:56
Alignment explanation
Indices: 8700627--8700740 Score: 219
Period size: 56 Copynumber: 2.0 Consensus size: 56
8700617 TTATATTTGC
8700627 TCAACCATTGTTGTATGCATCTTTATTTAATAAATGAAATGAACAAATAAGCATGT
1 TCAACCATTGTTGTATGCATCTTTATTTAATAAATGAAATGAACAAATAAGCATGT
*
8700683 TCAACCATTGTTGTATGCATCTTTTTTTAATAAATGAAATGAACAAATAAGCATGT
1 TCAACCATTGTTGTATGCATCTTTATTTAATAAATGAAATGAACAAATAAGCATGT
8700739 TC
1 TC
8700741 TTTGTATGGC
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 57 1.00
ACGTcount: A:0.38, C:0.13, G:0.12, T:0.37
Consensus pattern (56 bp):
TCAACCATTGTTGTATGCATCTTTATTTAATAAATGAAATGAACAAATAAGCATGT
Found at i:8710172 original size:25 final size:24
Alignment explanation
Indices: 8710144--8710192 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 24
8710134 CTTATTAAAA
8710144 TTTTAAATTATATTATTTTTTATAT
1 TTTTAAATTATATTA-TTTTTATAT
* *
8710169 TTTTTATTTATATTATTTTTATAT
1 TTTTAAATTATATTATTTTTATAT
8710193 CATGTCTTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 9 0.41
25 13 0.59
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (24 bp):
TTTTAAATTATATTATTTTTATAT
Found at i:8717554 original size:16 final size:17
Alignment explanation
Indices: 8717515--8717556 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
8717505 TTTAACATTA
*
8717515 AATATTAT-GAAATTTT
1 AATATTATAAAAATTTT
*
8717531 AATTTTATAAAAATTTT
1 AATATTATAAAAATTTT
8717548 AA-ATTATAA
1 AATATTATAA
8717557 TATTAAATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
16 13 0.59
17 9 0.41
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (17 bp):
AATATTATAAAAATTTT
Found at i:8718460 original size:2 final size:2
Alignment explanation
Indices: 8718453--8718479 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
8718443 TCAAATTTGA
8718453 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
8718480 GTTTTAAGAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8718573 original size:12 final size:12
Alignment explanation
Indices: 8718536--8718577 Score: 50
Period size: 12 Copynumber: 3.4 Consensus size: 12
8718526 TATCTTAATT
8718536 TTTATTTTTA-A
1 TTTATTTTTATA
*
8718547 TTTTTTATATTATA
1 TTTATT-T-TTATA
8718561 TTTATTTTTATA
1 TTTATTTTTATA
8718573 TTTAT
1 TTTAT
8718578 ATCGAACAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
11 5 0.19
12 11 0.42
13 4 0.15
14 6 0.23
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (12 bp):
TTTATTTTTATA
Found at i:8718797 original size:17 final size:18
Alignment explanation
Indices: 8718767--8718801 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
8718757 AATCTAAAAT
*
8718767 AAAATTTATATTATTAAA
1 AAAATTAATATTATTAAA
8718785 AAAATTAAT-TTATTAAA
1 AAAATTAATATTATTAAA
8718802 TATATATATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (18 bp):
AAAATTAATATTATTAAA
Found at i:8719202 original size:21 final size:23
Alignment explanation
Indices: 8719172--8719217 Score: 62
Period size: 21 Copynumber: 2.1 Consensus size: 23
8719162 TTTTCACTTC
8719172 ACATAATATTTAATTTT-TAT-TT
1 ACATAATATTT-ATTTTATATATT
8719194 ACAT-ATATTTATTTTATATATT
1 ACATAATATTTATTTTATATATT
8719216 AC
1 AC
8719218 TTTAAATAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.37, C:0.07, G:0.00, T:0.57
Consensus pattern (23 bp):
ACATAATATTTATTTTATATATT
Found at i:8720763 original size:22 final size:19
Alignment explanation
Indices: 8720720--8720778 Score: 64
Period size: 21 Copynumber: 2.9 Consensus size: 19
8720710 ATATAATATT
*
8720720 TAAAAATATTATTTTTAATA
1 TAAATATATT-TTTTTAATA
8720740 TAAATTATATTTTTATTATATA
1 TAAA-TATATTTTT-TTA-ATA
*
8720762 TAAATATAATTTTTTAA
1 TAAATATATTTTTTTAA
8720779 ATTAAAACAT
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
19 1 0.03
20 10 0.29
21 16 0.47
22 7 0.21
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (19 bp):
TAAATATATTTTTTTAATA
Done.