Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19866354
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 74000 characters in sequence are not A, C, G, or T
File 31 of 100
Found at i:8721245 original size:2 final size:2
Alignment explanation
Indices: 8721238--8721273 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
8721228 ATCTTTGTTG
*
8721238 AT AT AT AT AT AT AT AT AT AT AT GT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8721274 TTTTTCTTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8722332 original size:21 final size:21
Alignment explanation
Indices: 8722306--8722349 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
8722296 TATATTGAAG
* * *
8722306 ATTATTAGAATTTAAATTTTA
1 ATTATTAAAATTAAAAATTTA
8722327 ATTATTAAAATTAAAAATTTA
1 ATTATTAAAATTAAAAATTTA
8722348 AT
1 AT
8722350 ATTTTATAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (21 bp):
ATTATTAAAATTAAAAATTTA
Found at i:8734026 original size:115 final size:115
Alignment explanation
Indices: 8733823--8734053 Score: 372
Period size: 115 Copynumber: 2.0 Consensus size: 115
8733813 TTCTGACCAT
*
8733823 GCAAATTCTGTACCAACATTGACTGACAGGAGATGACTTTTGAACCTCTCCAAGATAGCTGCCTT
1 GCAAATTCTGTACCAACATTGACTGACAGGAGATGACTTTTGAACCCCTCCAAGATAGCTGCCTT
* *
8733888 TGCTGCTGATCTATCGTCTCATTTGTCATTTATTTCTTGATTGCATTCTG
66 TGCTGCTGATCTATCGTCCCATTTGTCATTTATTTCTTGACTGCATTCTG
** *
8733938 GCAAATTCTGTACGGACATTGACTTACAGGAGATGACTTTTGAACCCCTCCAAGATAGCTGCCTT
1 GCAAATTCTGTACCAACATTGACTGACAGGAGATGACTTTTGAACCCCTCCAAGATAGCTGCCTT
* * **
8734003 TGCTGGTGATCTCTTTTCCCATTTGTCATTTATTTCTTGACTGCATTCTG
66 TGCTGCTGATCTATCGTCCCATTTGTCATTTATTTCTTGACTGCATTCTG
8734053 G
1 G
8734054 TTCATATTTT
Statistics
Matches: 106, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
115 106 1.00
ACGTcount: A:0.22, C:0.23, G:0.18, T:0.37
Consensus pattern (115 bp):
GCAAATTCTGTACCAACATTGACTGACAGGAGATGACTTTTGAACCCCTCCAAGATAGCTGCCTT
TGCTGCTGATCTATCGTCCCATTTGTCATTTATTTCTTGACTGCATTCTG
Found at i:8735130 original size:12 final size:12
Alignment explanation
Indices: 8735113--8735137 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8735103 TCTAAGTGCG
8735113 CTGGTATATGCA
1 CTGGTATATGCA
8735125 CTGGTATATGCA
1 CTGGTATATGCA
8735137 C
1 C
8735138 CTATCTTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.32
Consensus pattern (12 bp):
CTGGTATATGCA
Found at i:8739013 original size:27 final size:27
Alignment explanation
Indices: 8738971--8739032 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
8738961 GATTTGACAA
* *
8738971 TTGAGCAAATGGATGGTAACATAGATG
1 TTGAGCAAATGCATGGCAACATAGATG
8738998 TTGAGCAAATGCATGGCAACATAGATG
1 TTGAGCAAATGCATGGCAACATAGATG
*
8739025 TTGCGCAA
1 TTGAGCAA
8739033 TTTGCAAGTC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.35, C:0.13, G:0.27, T:0.24
Consensus pattern (27 bp):
TTGAGCAAATGCATGGCAACATAGATG
Found at i:8744379 original size:22 final size:22
Alignment explanation
Indices: 8744354--8744397 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
8744344 ATTTTATGTC
8744354 CTTAATTCTAGTA-ATACAAATA
1 CTTAATTCTAG-AGATACAAATA
8744376 CTTAATTCTAGAGATACAAATA
1 CTTAATTCTAGAGATACAAATA
8744398 TAAATATACA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 1 0.05
22 20 0.95
ACGTcount: A:0.45, C:0.14, G:0.07, T:0.34
Consensus pattern (22 bp):
CTTAATTCTAGAGATACAAATA
Found at i:8744680 original size:13 final size:13
Alignment explanation
Indices: 8744659--8744689 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
8744649 TTGCAGAAGA
*
8744659 TTATGTGCAATGC
1 TTATTTGCAATGC
8744672 TTATTTGCAATGC
1 TTATTTGCAATGC
8744685 TTATT
1 TTATT
8744690 ATAGACTTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.23, C:0.13, G:0.16, T:0.48
Consensus pattern (13 bp):
TTATTTGCAATGC
Found at i:8754370 original size:23 final size:26
Alignment explanation
Indices: 8754323--8754370 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
8754313 AAATTAATTT
*
8754323 AATATAATATATCTTAATTATGTATA
1 AATATAATATATCTTAATTAGGTATA
8754349 AATATAATAT-T-TT-ATTAGGTAT
1 AATATAATATATCTTAATTAGGTAT
8754371 TAACTTAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 8 0.38
24 2 0.10
25 1 0.05
26 10 0.48
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.48
Consensus pattern (26 bp):
AATATAATATATCTTAATTAGGTATA
Found at i:8757108 original size:20 final size:20
Alignment explanation
Indices: 8757063--8757107 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
8757053 TTTTTAAAAG
**
8757063 CTTTTTGTTTTTTGGGTTTT
1 CTTTTTGTTTTTTGACTTTT
8757083 CTTTTTGTTTTTT-ACTTTT
1 CTTTTTGTTTTTTGACTTTT
8757102 CTTTTT
1 CTTTTT
8757108 TTGTTAAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 10 0.43
20 13 0.57
ACGTcount: A:0.02, C:0.09, G:0.11, T:0.78
Consensus pattern (20 bp):
CTTTTTGTTTTTTGACTTTT
Found at i:8757692 original size:16 final size:17
Alignment explanation
Indices: 8757652--8757695 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
8757642 GAATCGGGTG
*
8757652 ATAATATTTTATTAATAA
1 ATAA-ATTTTTTTAATAA
8757670 ATAAATTTTTTTAA-AA
1 ATAAATTTTTTTAATAA
*
8757686 TTAAATTTTT
1 ATAAATTTTT
8757696 AAATATTTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 11 0.46
17 9 0.38
18 4 0.17
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (17 bp):
ATAAATTTTTTTAATAA
Found at i:8758033 original size:31 final size:31
Alignment explanation
Indices: 8757998--8758062 Score: 130
Period size: 31 Copynumber: 2.1 Consensus size: 31
8757988 TTACATTTAT
8757998 ATATAATTAATAATAGTTTATATTAAAATAA
1 ATATAATTAATAATAGTTTATATTAAAATAA
8758029 ATATAATTAATAATAGTTTATATTAAAATAA
1 ATATAATTAATAATAGTTTATATTAAAATAA
8758060 ATA
1 ATA
8758063 AATACACTTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (31 bp):
ATATAATTAATAATAGTTTATATTAAAATAA
Found at i:8758946 original size:39 final size:39
Alignment explanation
Indices: 8758903--8758980 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
8758893 TAATTTATGA
8758903 AATTTGCTAAATGGATATTTTATTTTAATATAATCTGTG
1 AATTTGCTAAATGGATATTTTATTTTAATATAATCTGTG
8758942 AATTTGCTAAATGGATATTTTATTTTAATATAATCTGTG
1 AATTTGCTAAATGGATATTTTATTTTAATATAATCTGTG
8758981 TTTTATTAGT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.33, C:0.05, G:0.13, T:0.49
Consensus pattern (39 bp):
AATTTGCTAAATGGATATTTTATTTTAATATAATCTGTG
Found at i:8764644 original size:58 final size:60
Alignment explanation
Indices: 8764549--8764679 Score: 180
Period size: 58 Copynumber: 2.2 Consensus size: 60
8764539 GTCAGCATGA
* * *
8764549 GAGTTTCAAGT-AAGATTTAGTACTGCTTATTAGGTTTGGCTGATGTGGATATCTGCTT-
1 GAGTTTCAAGTAAAGATTTAGGACGGCTTATTAGGTTTGGCTGATGTGAATATCTGCTTG
8764607 GAGTTTCAAGTAAAGA-TTAGGACGGCTTATTCA-GTTTGGCTGATGTGAATATCTGCTTGG
1 GAGTTTCAAGTAAAGATTTAGGACGGCTTATT-AGGTTTGGCTGATGTGAATATCTGCTT-G
*
8764667 GAGTTCCAAGTAA
1 GAGTTTCAAGTAA
8764680 TGTATAAGAC
Statistics
Matches: 65, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
58 48 0.74
59 5 0.08
60 12 0.18
ACGTcount: A:0.25, C:0.11, G:0.27, T:0.37
Consensus pattern (60 bp):
GAGTTTCAAGTAAAGATTTAGGACGGCTTATTAGGTTTGGCTGATGTGAATATCTGCTTG
Found at i:8770410 original size:2 final size:2
Alignment explanation
Indices: 8770403--8770432 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
8770393 CAATGGTGCA
8770403 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
8770433 ATATATATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:8775397 original size:11 final size:11
Alignment explanation
Indices: 8775383--8775431 Score: 53
Period size: 12 Copynumber: 4.3 Consensus size: 11
8775373 AAAAATAGAA
8775383 TTAAAAAAATT
1 TTAAAAAAATT
8775394 TTAAAAAAATTT
1 TTAAAAAAA-TT
*
8775406 TTAAAATAGATT
1 TTAAAA-AAATT
* *
8775418 TTCAAAAAACT
1 TTAAAAAAATT
8775429 TTA
1 TTA
8775432 GCTTTTAAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
11 14 0.45
12 15 0.48
13 2 0.06
ACGTcount: A:0.55, C:0.04, G:0.02, T:0.39
Consensus pattern (11 bp):
TTAAAAAAATT
Found at i:8775418 original size:13 final size:12
Alignment explanation
Indices: 8775383--8775426 Score: 54
Period size: 13 Copynumber: 3.7 Consensus size: 12
8775373 AAAAATAGAA
8775383 TTAAAAAAA-TT
1 TTAAAAAAATTT
8775394 TTAAAAAAATTT
1 TTAAAAAAATTT
*
8775406 TTAAAATAGATTT
1 TTAAAA-AAATTT
*
8775419 TCAAAAAA
1 TTAAAAAA
8775427 CTTTAGCTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
11 9 0.32
12 9 0.32
13 10 0.36
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.36
Consensus pattern (12 bp):
TTAAAAAAATTT
Found at i:8777516 original size:16 final size:16
Alignment explanation
Indices: 8777495--8777532 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
8777485 TTCCTTTGTA
8777495 GAAGATGATGTAGGAT
1 GAAGATGATGTAGGAT
8777511 GAAGATGATGTAGGAT
1 GAAGATGATGTAGGAT
*
8777527 AAAGAT
1 GAAGAT
8777533 ATTGTTTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.42, C:0.00, G:0.34, T:0.24
Consensus pattern (16 bp):
GAAGATGATGTAGGAT
Found at i:8785633 original size:2 final size:2
Alignment explanation
Indices: 8785626--8785681 Score: 80
Period size: 2 Copynumber: 28.5 Consensus size: 2
8785616 CAAGACACTT
*
8785626 TA TA TA TA TA TA TA TA TA TA TA TGA TA TA TA TA TG TA -A TA TA
1 TA TA TA TA TA TA TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA
8785668 TA TA -A TA TA TA TA T
1 TA TA TA TA TA TA TA T
8785682 GTCCTCTTTC
Statistics
Matches: 49, Mismatches: 2, Indels: 6
0.86 0.04 0.11
Matches are distributed among these distances:
1 2 0.04
2 45 0.92
3 2 0.04
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (2 bp):
TA
Found at i:8785655 original size:11 final size:11
Alignment explanation
Indices: 8785629--8785682 Score: 76
Period size: 11 Copynumber: 5.0 Consensus size: 11
8785619 GACACTTTAT
8785629 ATATATATAT-
1 ATATATATATG
8785639 ATATATATATG
1 ATATATATATG
8785650 ATATATATATG
1 ATATATATATG
*
8785661 -TAATATATATA
1 AT-ATATATATG
8785672 ATATATATATG
1 ATATATATATG
8785683 TCCTCTTTCA
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
10 11 0.28
11 27 0.69
12 1 0.03
ACGTcount: A:0.48, C:0.00, G:0.06, T:0.46
Consensus pattern (11 bp):
ATATATATATG
Found at i:8790447 original size:2 final size:2
Alignment explanation
Indices: 8790440--8790475 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
8790430 ACACATGCCA
8790440 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8790476 TGTATTAGGC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8792799 original size:29 final size:29
Alignment explanation
Indices: 8792752--8792808 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
8792742 ATCTCGTTAG
* *
8792752 TTAATAAATTTATAATTTAA-ATTTTATA
1 TTAAAAAATTTAAAATTTAATATTTTATA
8792780 TTAAAAAATTTTAAAATTTAATATTTTAT
1 TTAAAAAA-TTTAAAATTTAATATTTTAT
8792809 TATAATTTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 7 0.28
29 11 0.44
30 7 0.28
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (29 bp):
TTAAAAAATTTAAAATTTAATATTTTATA
Found at i:8794969 original size:14 final size:14
Alignment explanation
Indices: 8794943--8794984 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
8794933 GGTTCATTAG
8794943 TTTTGTAAAAAATGA
1 TTTT-TAAAAAATGA
* *
8794958 TTTTTGAAAAATAA
1 TTTTTAAAAAATGA
8794972 TTTTTAAAAAATG
1 TTTTTAAAAAATG
8794985 TTTATAATTT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
14 19 0.83
15 4 0.17
ACGTcount: A:0.48, C:0.00, G:0.10, T:0.43
Consensus pattern (14 bp):
TTTTTAAAAAATGA
Found at i:8795076 original size:16 final size:17
Alignment explanation
Indices: 8795057--8795088 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
8795047 TGTTGTTTGG
8795057 TTGTTTTTT-AAAAATT
1 TTGTTTTTTCAAAAATT
8795073 TTGTTTTTTCAAAAAT
1 TTGTTTTTTCAAAAAT
8795089 AATATTAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.31, C:0.03, G:0.06, T:0.59
Consensus pattern (17 bp):
TTGTTTTTTCAAAAATT
Found at i:8795172 original size:26 final size:26
Alignment explanation
Indices: 8795103--8795173 Score: 92
Period size: 26 Copynumber: 2.7 Consensus size: 26
8795093 TTAATATAAC
8795103 TATT-AAAATATTAAAATATATTTAT
1 TATTAAAAATATTAAAATATATTTAT
* *
8795128 TGTTAAAATATATTGAAAT-TATTTAT
1 TATTAAAA-ATATTAAAATATATTTAT
8795154 TATTAAAAATACTTAAAATA
1 TATTAAAAATA-TTAAAATA
8795174 AATATTTTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
25 6 0.16
26 23 0.61
27 9 0.24
ACGTcount: A:0.51, C:0.01, G:0.03, T:0.45
Consensus pattern (26 bp):
TATTAAAAATATTAAAATATATTTAT
Found at i:8795244 original size:15 final size:19
Alignment explanation
Indices: 8795188--8795239 Score: 83
Period size: 19 Copynumber: 2.9 Consensus size: 19
8795178 TTTTATTCTT
8795188 ATATTATTT-T-AATA-TA
1 ATATTATTTATGAATATTA
8795204 ATATTATTTATGAATATTA
1 ATATTATTTATGAATATTA
8795223 ATATTATTTATGAATAT
1 ATATTATTTATGAATAT
8795240 ATTATAATAT
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
16 9 0.27
17 1 0.03
18 4 0.12
19 19 0.58
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (19 bp):
ATATTATTTATGAATATTA
Found at i:8795364 original size:17 final size:17
Alignment explanation
Indices: 8795325--8795357 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
8795315 AATTTTACTC
8795325 AAAAATAATTTTTTTTG
1 AAAAATAATTTTTTTTG
8795342 AAAAATAATTTTTTTT
1 AAAAATAATTTTTTTT
8795358 TTTAAATTCG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (17 bp):
AAAAATAATTTTTTTTG
Found at i:8795422 original size:23 final size:22
Alignment explanation
Indices: 8795386--8795429 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
8795376 TTTTTAAAAG
8795386 AATAATATCATTTTTCATTAATC
1 AATAATATCATTTTTC-TTAATC
8795409 AATAA-ATCATTTTTTCTTAAT
1 AATAATATCA-TTTTTCTTAAT
8795430 TAATCAATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.39, C:0.11, G:0.00, T:0.50
Consensus pattern (22 bp):
AATAATATCATTTTTCTTAATC
Found at i:8795491 original size:14 final size:14
Alignment explanation
Indices: 8795465--8795508 Score: 70
Period size: 14 Copynumber: 3.1 Consensus size: 14
8795455 TTTAAAAACA
8795465 TAAAAATTAATTTTT
1 TAAAAATT-ATTTTT
*
8795480 TAAAAATTATTTTA
1 TAAAAATTATTTTT
8795494 TAAAAATTATTTTT
1 TAAAAATTATTTTT
8795508 T
1 T
8795509 GCGAAATAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
14 19 0.70
15 8 0.30
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (14 bp):
TAAAAATTATTTTT
Found at i:8796108 original size:30 final size:30
Alignment explanation
Indices: 8796039--8796112 Score: 105
Period size: 29 Copynumber: 2.5 Consensus size: 30
8796029 TTATGGAAAA
* *
8796039 ATAAATTTTTATTTTTTTATTTATATTCAG
1 ATAAATTTTTAATTTTTAATTTATATTCAG
*
8796069 AT-AATTTTTAATTTTTAATTTATATTTAG
1 ATAAATTTTTAATTTTTAATTTATATTCAG
*
8796098 ATAAAATTTTAATTT
1 ATAAATTTTTAATTT
8796113 ATATTCAAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
29 26 0.67
30 13 0.33
ACGTcount: A:0.35, C:0.01, G:0.03, T:0.61
Consensus pattern (30 bp):
ATAAATTTTTAATTTTTAATTTATATTCAG
Found at i:8796124 original size:23 final size:24
Alignment explanation
Indices: 8796081--8796130 Score: 75
Period size: 23 Copynumber: 2.1 Consensus size: 24
8796071 AATTTTTAAT
* *
8796081 TTTTAATTTATATTTAGATAAA-A
1 TTTTAATTTATATTCAAATAAATA
8796104 TTTTAATTTATATTCAAATAAATA
1 TTTTAATTTATATTCAAATAAATA
8796128 TTT
1 TTT
8796131 AACCTTTAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
23 20 0.83
24 4 0.17
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (24 bp):
TTTTAATTTATATTCAAATAAATA
Found at i:8798111 original size:2 final size:2
Alignment explanation
Indices: 8798104--8798134 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
8798094 CTTTTGCCTT
8798104 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8798135 TCAATACTCC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8806012 original size:2 final size:2
Alignment explanation
Indices: 8806005--8806034 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
8805995 ACTCTTCAAC
8806005 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
8806035 ACATTAACTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:8811002 original size:54 final size:55
Alignment explanation
Indices: 8810940--8811137 Score: 169
Period size: 54 Copynumber: 3.6 Consensus size: 55
8810930 TTTTTCATTC
*
8810940 TTTGATATAATATTATTTTTATTACTTT-TTAATTATTTATCAATAAAATTATTA
1 TTTGATATAAAATTATTTTTATTACTTTATTAATTATTTATCAATAAAATTATTA
* * * * * *** *
8810994 TTTGATATAAAAATA-ATTTA-TATCTTTTCTTAATAATTT-T-TAT-TTTTTCATTC
1 TTTGATATAAAATTATTTTTATTA-C-TTTATTAATTATTTATCAATAAAATT-ATTA
** *
8811047 TTTGATATATTATTATTTTTATTACTTT-TTAATTATTTACCAATAAAATTATTA
1 TTTGATATAAAATTATTTTTATTACTTTATTAATTATTTATCAATAAAATTATTA
8811101 TTTGATATAAAATTAAATTTTTAATTA-TTTATTAATT
1 TTTGATATAAAATT--ATTTTT-ATTACTTTATTAATT
8811138 TTATAAATAT
Statistics
Matches: 109, Mismatches: 22, Indels: 23
0.71 0.14 0.15
Matches are distributed among these distances:
52 13 0.12
53 25 0.23
54 39 0.36
55 13 0.12
56 9 0.08
57 10 0.09
ACGTcount: A:0.36, C:0.05, G:0.02, T:0.58
Consensus pattern (55 bp):
TTTGATATAAAATTATTTTTATTACTTTATTAATTATTTATCAATAAAATTATTA
Found at i:8811028 original size:20 final size:20
Alignment explanation
Indices: 8811005--8811042 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
8810995 TTGATATAAA
8811005 AATAATTTATATCTTTTCTT
1 AATAATTTATATCTTTTCTT
* *
8811025 AATAATTTTTATTTTTTC
1 AATAATTTATATCTTTTC
8811043 ATTCTTTGAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.29, C:0.08, G:0.00, T:0.63
Consensus pattern (20 bp):
AATAATTTATATCTTTTCTT
Found at i:8811034 original size:107 final size:107
Alignment explanation
Indices: 8810906--8811112 Score: 378
Period size: 107 Copynumber: 1.9 Consensus size: 107
8810896 AATTACTAAA
* *
8810906 ATATTTTTTCTTAATAATTTTTCTTTTTTCATTCTTTGATATAATATTATTTTTATTACTTTTTA
1 ATATCTTTTCTTAATAATTTTTATTTTTTCATTCTTTGATATAATATTATTTTTATTACTTTTTA
*
8810971 ATTATTTATCAATAAAATTATTATTTGATATAAAAATAATTT
66 ATTATTTACCAATAAAATTATTATTTGATATAAAAATAATTT
*
8811013 ATATCTTTTCTTAATAATTTTTATTTTTTCATTCTTTGATATATTATTATTTTTATTACTTTTTA
1 ATATCTTTTCTTAATAATTTTTATTTTTTCATTCTTTGATATAATATTATTTTTATTACTTTTTA
8811078 ATTATTTACCAATAAAATTATTATTTGATATAAAA
66 ATTATTTACCAATAAAATTATTATTTGATATAAAA
8811113 TTAAATTTTT
Statistics
Matches: 96, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
107 96 1.00
ACGTcount: A:0.33, C:0.06, G:0.02, T:0.58
Consensus pattern (107 bp):
ATATCTTTTCTTAATAATTTTTATTTTTTCATTCTTTGATATAATATTATTTTTATTACTTTTTA
ATTATTTACCAATAAAATTATTATTTGATATAAAAATAATTT
Found at i:8813954 original size:23 final size:23
Alignment explanation
Indices: 8813928--8813974 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
8813918 GATGGAATAC
8813928 AATCAGCATGAACAGGTACCACT
1 AATCAGCATGAACAGGTACCACT
8813951 AATCAGCATGAACAGGTACCACT
1 AATCAGCATGAACAGGTACCACT
8813974 A
1 A
8813975 TCCTCTAGGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.40, C:0.26, G:0.17, T:0.17
Consensus pattern (23 bp):
AATCAGCATGAACAGGTACCACT
Found at i:8816726 original size:17 final size:15
Alignment explanation
Indices: 8816704--8816753 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 15
8816694 CTCAATTTTG
8816704 TTTTATATTTTTGTTA
1 TTTTATATTTTTG-TA
*
8816720 TTTTTATTTTATTTGTA
1 -TTTTATATT-TTTGTA
8816737 TTTTATATTTTATGTA
1 TTTTATATTTT-TGTA
8816753 T
1 T
8816754 ATATTTTTCT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
15 2 0.07
16 13 0.45
17 10 0.34
18 4 0.14
ACGTcount: A:0.20, C:0.00, G:0.06, T:0.74
Consensus pattern (15 bp):
TTTTATATTTTTGTA
Found at i:8816731 original size:11 final size:12
Alignment explanation
Indices: 8816698--8816769 Score: 62
Period size: 11 Copynumber: 6.2 Consensus size: 12
8816688 GGTAAGCTCA
*
8816698 ATTTTGTTTTAT
1 ATTTTATTTTAT
*
8816710 ATTTT-TGTTAT
1 ATTTTATTTTAT
8816721 -TTTTATTTTAT
1 ATTTTATTTTAT
*
8816732 -TTGTATTTTAT
1 ATTTTATTTTAT
*
8816743 ATTTTATGTATAT
1 ATTTTAT-TTTAT
8816756 ATTTT-TCTTTAT
1 ATTTTAT-TTTAT
8816768 AT
1 AT
8816770 CCTATGTATT
Statistics
Matches: 50, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
10 4 0.08
11 20 0.40
12 17 0.34
13 9 0.18
ACGTcount: A:0.21, C:0.01, G:0.06, T:0.72
Consensus pattern (12 bp):
ATTTTATTTTAT
Found at i:8816745 original size:18 final size:17
Alignment explanation
Indices: 8816704--8816751 Score: 64
Period size: 18 Copynumber: 2.9 Consensus size: 17
8816694 CTCAATTTTG
8816704 TTTTATATTTT-TGTTA
1 TTTTATATTTTATGTTA
*
8816720 TTTT-TATTTTATTTGTA
1 TTTTATATTTTATGT-TA
8816737 TTTTATATTTTATGT
1 TTTTATATTTTATGT
8816752 ATATATTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
15 6 0.22
16 6 0.22
17 6 0.22
18 9 0.33
ACGTcount: A:0.19, C:0.00, G:0.06, T:0.75
Consensus pattern (17 bp):
TTTTATATTTTATGTTA
Found at i:8816898 original size:31 final size:30
Alignment explanation
Indices: 8816858--8816923 Score: 73
Period size: 31 Copynumber: 2.2 Consensus size: 30
8816848 ATTTTATATG
8816858 TATTTTTA-T-TTATCTAATTATATATTTACT
1 TATTTTTATTATTAT-TAATTAT-TATTTACT
* *
8816888 TATTTGTTATTATTATTATTTATTATTTATT
1 TATTT-TTATTATTATTAATTATTATTTACT
8816919 TATTT
1 TATTT
8816924 ATCTTATAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
30 5 0.16
31 15 0.48
32 7 0.23
33 4 0.13
ACGTcount: A:0.27, C:0.03, G:0.02, T:0.68
Consensus pattern (30 bp):
TATTTTTATTATTATTAATTATTATTTACT
Found at i:8816917 original size:20 final size:22
Alignment explanation
Indices: 8816858--8816918 Score: 63
Period size: 24 Copynumber: 2.7 Consensus size: 22
8816848 ATTTTATATG
8816858 TATTT-TTATTTATCTAATTATA
1 TATTTATTATTTAT-TAATTATA
*
8816880 TATTTACTTATTTGTT-ATTATTA
1 TATTTA-TTATTTATTAATTA-TA
8816903 TTATTTATTATTTATT
1 -TATTTATTATTTATT
8816919 TATTTATCTT
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
22 9 0.27
23 11 0.33
24 13 0.39
ACGTcount: A:0.28, C:0.03, G:0.02, T:0.67
Consensus pattern (22 bp):
TATTTATTATTTATTAATTATA
Found at i:8816930 original size:20 final size:20
Alignment explanation
Indices: 8816862--8816952 Score: 75
Period size: 21 Copynumber: 4.8 Consensus size: 20
8816852 TATATGTATT
* *
8816862 TTTATTTATCTAATTATATA
1 TTTATTTATCTTATTATTTA
* *
8816882 TTTACTTAT-TTGTTA-TTA
1 TTTATTTATCTTATTATTTA
8816900 -TTA-TTAT-TTATTATTTA
1 TTTATTTATCTTATTATTTA
* *
8816917 TTTATTTATCTTATAATATTG
1 TTTATTTATCTTATTAT-TTA
*
8816938 TTGATTTATCTTATT
1 TTTATTTATCTTATT
8816953 TTTCTAATTA
Statistics
Matches: 57, Mismatches: 9, Indels: 9
0.76 0.12 0.12
Matches are distributed among these distances:
16 9 0.16
17 6 0.11
18 5 0.09
19 8 0.14
20 14 0.25
21 15 0.26
ACGTcount: A:0.27, C:0.04, G:0.03, T:0.65
Consensus pattern (20 bp):
TTTATTTATCTTATTATTTA
Found at i:8817869 original size:5 final size:5
Alignment explanation
Indices: 8817838--8817932 Score: 68
Period size: 5 Copynumber: 18.2 Consensus size: 5
8817828 TTAGATTAGG
* * * *
8817838 TTTAT TTGAT ATTCT TTTAT CTTTAT TTTAT TTTATT TTTATT TTTGT
1 TTTAT TTTAT TTTAT TTTAT -TTTAT TTTAT TTTA-T TTTA-T TTTAT
* *
8817886 TTTACT TTT-C TTTAT TTT-T TTTAT TTTCACT TTTAT TTTGT TTTAT
1 TTTA-T TTTAT TTTAT TTTAT TTTAT TTT-A-T TTTAT TTTAT TTTAT
8817932 T
1 T
8817933 ATTCTATTTT
Statistics
Matches: 71, Mismatches: 12, Indels: 14
0.73 0.12 0.14
Matches are distributed among these distances:
4 7 0.10
5 39 0.55
6 21 0.30
7 4 0.06
ACGTcount: A:0.15, C:0.06, G:0.03, T:0.76
Consensus pattern (5 bp):
TTTAT
Found at i:8817876 original size:21 final size:21
Alignment explanation
Indices: 8817838--8817932 Score: 81
Period size: 21 Copynumber: 4.5 Consensus size: 21
8817828 TTAGATTAGG
* *
8817838 TTTATTTGATATT-CTTTTAT
1 TTTATTTTATTTTACTTTTAT
*
8817858 CTTTATTTTATTTTATTTTTATT
1 -TTTATTTTATTTTACTTTTA-T
*
8817881 TTTGTTTTACTTTT-C-TTTAT
1 TTTATTTTA-TTTTACTTTTAT
8817901 TTT-TTTTATTTTCACTTTTAT
1 TTTATTTTATTTT-ACTTTTAT
*
8817922 TTTGTTTTATT
1 TTTATTTTATT
8817933 ATTCTATTTT
Statistics
Matches: 62, Mismatches: 5, Indels: 13
0.77 0.06 0.16
Matches are distributed among these distances:
18 4 0.06
19 5 0.08
20 5 0.08
21 23 0.37
22 20 0.32
23 5 0.08
ACGTcount: A:0.15, C:0.06, G:0.03, T:0.76
Consensus pattern (21 bp):
TTTATTTTATTTTACTTTTAT
Found at i:8817877 original size:6 final size:6
Alignment explanation
Indices: 8817852--8817924 Score: 53
Period size: 6 Copynumber: 12.5 Consensus size: 6
8817842 TTTGATATTC
* * * *
8817852 TTTTAT CTTTA- TTTTA- TTTTAT TTTTAT TTTT-G TTTTAC TTTTCT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
* * *
8817897 TTATTTT TTTTAT TTTCAC TTTTAT TTT
1 TT-TTAT TTTTAT TTTTAT TTTTAT TTT
8817925 GTTTTATTAT
Statistics
Matches: 52, Mismatches: 12, Indels: 6
0.74 0.17 0.09
Matches are distributed among these distances:
5 13 0.25
6 34 0.65
7 5 0.10
ACGTcount: A:0.14, C:0.07, G:0.01, T:0.78
Consensus pattern (6 bp):
TTTTAT
Found at i:8818256 original size:118 final size:119
Alignment explanation
Indices: 8817975--8818306 Score: 524
Period size: 118 Copynumber: 2.8 Consensus size: 119
8817965 AAATTTGGGA
* *
8817975 AAAAGTTGAAAGTATCAATTTTCCTCGAAAATCAAAATTTTCAAAAAATATTTTTGAGAAAAAGT
1 AAAAGTTGAAAGTATCAATTTTCCTCGAAAATCAAAGTTTCCAAAAAATATTTTTGAGAAAAAGT
*
8818040 TGAAAATATCAATTTTTCTTATAAATAAAATTTCAAAAAAAAAAAAGGGTTTTTGAGG
66 TGAAAATATCAATTTTTCTTAAAAATAAAATTTC----AAAAAAAAGGGTTTTTGAGG
*
8818098 AAAAGTTGAAAGTATCAATTTTCCTCGAAAGTCAAAGTTTCCAAAAAATATTTTT-AGAGAAAAG
1 AAAAGTTGAAAGTATCAATTTTCCTCGAAAATCAAAGTTTCCAAAAAATATTTTTGAGA-AAAAG
* * *
8818162 TTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC-AAAAAAAGGTTTTTTGAGG
65 TTGAAAATATCAATTTTTCTTAAAAATAAAATTTCAAAAAAAAGGGTTTTTGAGG
* *
8818216 AAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCCAAAAAATATTTTTGGGAAAAAGT
1 AAAAGTTGAAAGTATCAATTTTCCTCGAAAATCAAAGTTTCCAAAAAATATTTTTGAGAAAAAGT
8818281 TGAAAATATCAATTTTTCTTAAAAAT
66 TGAAAATATCAATTTTTCTTAAAAAT
8818307 CAATTTTTGA
Statistics
Matches: 195, Mismatches: 12, Indels: 9
0.90 0.06 0.04
Matches are distributed among these distances:
118 101 0.52
119 2 0.01
122 3 0.02
123 89 0.46
ACGTcount: A:0.46, C:0.08, G:0.12, T:0.34
Consensus pattern (119 bp):
AAAAGTTGAAAGTATCAATTTTCCTCGAAAATCAAAGTTTCCAAAAAATATTTTTGAGAAAAAGT
TGAAAATATCAATTTTTCTTAAAAATAAAATTTCAAAAAAAAGGGTTTTTGAGG
Found at i:8818306 original size:59 final size:59
Alignment explanation
Indices: 8817968--8818309 Score: 372
Period size: 59 Copynumber: 5.7 Consensus size: 59
8817958 AAAAAAAAAA
** *
8817968 TTTGGGAAAAAGTTGAAAGTATCAATTTTCCTCGAAAATCAAAATTTTCAAAAAATATT
1 TTTGGGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAATTTCCAAAAAATATT
* * * * * *
8818027 TTTGAGAAAAAGTTGAAAATATCAATTTTTCTTATAAAT-AAAATTTCAAAAAAAAAAAAGGGTT
1 TTTGGGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAATTTC---CAAAAAATA---TT
** * *
8818091 TTTGAGG-AAAAGTTGAAAGTATCAATTTTCCTCGAAAGTCAAAGTTTCCAAAAAATATT
1 TTTG-GGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAATTTCCAAAAAATATT
* *
8818150 TTT-AGAGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAATTTCAAAAAAAGGT-TT
1 TTTGGGA-AAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAATTTCCAAAAAA--TATT
* *
8818209 TTTGAGG-AAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCCAAAAAATATT
1 TTTG-GGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAATTTCCAAAAAATATT
* *
8818268 TTTGGGAAAAAGTTGAAAATATCAATTTTTCTTAAAAATCAA
1 TTTGGGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAA
8818310 TTTTTGAGGA
Statistics
Matches: 234, Mismatches: 32, Indels: 34
0.78 0.11 0.11
Matches are distributed among these distances:
57 1 0.00
58 23 0.10
59 141 0.60
60 14 0.06
61 8 0.03
62 7 0.03
64 32 0.14
65 8 0.03
ACGTcount: A:0.45, C:0.08, G:0.13, T:0.34
Consensus pattern (59 bp):
TTTGGGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAATTTCCAAAAAATATT
Found at i:8818323 original size:44 final size:44
Alignment explanation
Indices: 8818265--8818350 Score: 138
Period size: 44 Copynumber: 2.0 Consensus size: 44
8818255 TCCAAAAAAT
*
8818265 ATTTTTGGGAAAAAGTTGAAAATATCAATTTTTCTTAAAAATCA
1 ATTTTTGGGAAAAAGTTGAAAATATCAATTTTCCTTAAAAATCA
*
8818309 ATTTTTGAGG-AAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
1 ATTTTTG-GGAAAAAGTTGAAAATATCAATTTTCCTTAAAAAT
8818351 AAAATTAAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
44 37 0.95
45 2 0.05
ACGTcount: A:0.42, C:0.07, G:0.13, T:0.38
Consensus pattern (44 bp):
ATTTTTGGGAAAAAGTTGAAAATATCAATTTTCCTTAAAAATCA
Found at i:8818338 original size:162 final size:162
Alignment explanation
Indices: 8818147--8818459 Score: 472
Period size: 162 Copynumber: 1.9 Consensus size: 162
8818137 TCCAAAAAAT
** ***
8818147 ATTTTTAGAGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAAAA-GGTTTTT
1 ATTTTTAGAGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTAAAAAAAAATCAATTTT
* * *
8818211 TGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCCAAAA-AATATTTTT-GGG
66 TGAGGAAAAGTTAAAAGTATCAATTTTCC-TCAAAATCAAAGTTT-CAAAATAATATTTTTAGAG
8818274 AAAAAGTTGAAAATATCAATTTTTCTTAAAAATCA
129 -AAAAGTTGAAAATATCAATTTTTCTTAAAAATCA
8818309 ATTTTT-GAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTAAAAAAAAATCAATTT
1 ATTTTTAGA-GAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTAAAAAAAAATCAATTT
*
8818373 TTGAGGAAAAGTTAAAAGTATCAATTTTCCTCAAAATTAAAGTTTCAAAATAATATTTTTAGAGA
65 TTGAGGAAAAGTTAAAAGTATCAATTTTCCTCAAAATCAAAGTTTCAAAATAATATTTTTAGAGA
*
8818438 AAAGTTGAAAGTATCAATTTTT
130 AAAGTTGAAAATATCAATTTTT
8818460 TTCTGCACAA
Statistics
Matches: 137, Mismatches: 10, Indels: 8
0.88 0.06 0.05
Matches are distributed among these distances:
161 7 0.05
162 96 0.70
163 34 0.25
ACGTcount: A:0.45, C:0.07, G:0.12, T:0.35
Consensus pattern (162 bp):
ATTTTTAGAGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTAAAAAAAAATCAATTTT
TGAGGAAAAGTTAAAAGTATCAATTTTCCTCAAAATCAAAGTTTCAAAATAATATTTTTAGAGAA
AAGTTGAAAATATCAATTTTTCTTAAAAATCA
Found at i:8818379 original size:60 final size:60
Alignment explanation
Indices: 8818301--8818458 Score: 223
Period size: 60 Copynumber: 2.7 Consensus size: 60
8818291 AATTTTTCTT
*
8818301 AAAAATCAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTAAAA
1 AAAAATCAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCAAAAATAAAATTAAAA
* * * **
8818361 AAAAATCAATTTTTGAGGAAAAGTTAAAAGTATCAATTTTCCTCAAAATTAAAGTTTCAA
1 AAAAATCAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCAAAAATAAAATTAAAA
*
8818421 AATAAT--ATTTTT-AGAGAAAAGTTGAAAGTATCAATTTT
1 AAAAATCAATTTTTGAG-GAAAAGTTGAAAGTATCAATTTT
8818459 TTTCTGCACA
Statistics
Matches: 89, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
57 2 0.02
58 28 0.31
60 59 0.66
ACGTcount: A:0.48, C:0.07, G:0.11, T:0.34
Consensus pattern (60 bp):
AAAAATCAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCAAAAATAAAATTAAAA
Found at i:8818395 original size:27 final size:27
Alignment explanation
Indices: 8818305--8818400 Score: 75
Period size: 27 Copynumber: 3.3 Consensus size: 27
8818295 TTTCTTAAAA
*
8818305 ATCAATTTTTGAGGAAAAGTTGAAAGT
1 ATCAATTTTTGAGGAAAAGTTAAAAGT
* ** * **
8818332 ATCAATTTTCCTTAAAAATAAAATTAAAAAAAA
1 ATCAA-TTT--TTGAGGA-AAAGTT--AAAAGT
8818365 ATCAATTTTTGAGGAAAAGTTAAAAGT
1 ATCAATTTTTGAGGAAAAGTTAAAAGT
8818392 ATCAATTTT
1 ATCAATTTT
8818401 CCTCAAAATT
Statistics
Matches: 50, Mismatches: 13, Indels: 12
0.67 0.17 0.16
Matches are distributed among these distances:
27 18 0.36
28 3 0.06
29 5 0.10
30 8 0.16
31 5 0.10
32 3 0.06
33 8 0.16
ACGTcount: A:0.48, C:0.06, G:0.11, T:0.34
Consensus pattern (27 bp):
ATCAATTTTTGAGGAAAAGTTAAAAGT
Found at i:8818401 original size:103 final size:103
Alignment explanation
Indices: 8818207--8818400 Score: 286
Period size: 103 Copynumber: 1.9 Consensus size: 103
8818197 AAAAAAAGGT
* * ***
8818207 TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCCAAAAAATATTTTTG
1 TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAATTAAAAAAAAATATTTTTG
8818272 GGAAAAAGTTGAAAATATCAATTTTTCTTAAAAATCAA
66 GGAAAAAGTTGAAAATATCAATTTTTCTTAAAAATCAA
8818310 TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAATTAAAAAAAAATCAATTTT
1 TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAATTAAAAAAAAAT--ATTTT
8818374 TGAGG-AAAAGTT-AAAAGTATCAATTTT
64 TG-GGAAAAAGTTGAAAA-TATCAATTTT
8818401 CCTCAAAATT
Statistics
Matches: 82, Mismatches: 5, Indels: 7
0.87 0.05 0.07
Matches are distributed among these distances:
102 12 0.15
103 44 0.54
104 24 0.29
105 2 0.02
ACGTcount: A:0.45, C:0.07, G:0.12, T:0.36
Consensus pattern (103 bp):
TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAATTAAAAAAAAATATTTTTG
GGAAAAAGTTGAAAATATCAATTTTTCTTAAAAATCAA
Found at i:8823690 original size:18 final size:19
Alignment explanation
Indices: 8823669--8823716 Score: 64
Period size: 17 Copynumber: 2.6 Consensus size: 19
8823659 CTATTTAATT
8823669 TTTATTTTTTATTTTTT-A
1 TTTATTTTTTATTTTTTGA
8823687 TTTA-TTTTTATTTTTTGA
1 TTTATTTTTTATTTTTTGA
* *
8823705 GTTATTTGTTAT
1 TTTATTTTTTAT
8823717 GAATTATATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
17 12 0.46
18 8 0.31
19 6 0.23
ACGTcount: A:0.17, C:0.00, G:0.06, T:0.77
Consensus pattern (19 bp):
TTTATTTTTTATTTTTTGA
Found at i:8824490 original size:185 final size:185
Alignment explanation
Indices: 8824173--8824540 Score: 610
Period size: 185 Copynumber: 2.0 Consensus size: 185
8824163 ACCCAGATTT
*
8824173 CGATAAAGTTTTTCAGAATCCAGTGAAGGATTCAACCGGAGTTCATCCAAATAAAAAGAGAGGAA
1 CGATAAAGTTTTTCAGAATCCAGTGAAGGATTCAACCGGAGTTCATCCAAATAAAAAGAGAGAAA
* * *
8824238 AAGAAAAGAAGGAGGAAGAAAGAGAGGGGGAAGAAGAATTCTATTGAAAATGTTGAGAATTAGAC
66 AAGAAAAGAAGGAGGAAGAAAGAGAGGGAGAAGAAAAATTCTATTGAAAATGCTGAGAATTAGAC
8824303 TTATATACCTATTGAAAACGACATCATTTTACGTCTAAGTAAATCCCAGGATCTG
131 TTATATACCTATTGAAAACGACATCATTTTACGTCTAAGTAAATCCCAGGATCTG
* * ** *
8824358 CGATGAAGTTTTTTAGAATCTGGTGAAGGATTCAACCGGAGTTCATCCAAATAGAAAGAGAGAAA
1 CGATAAAGTTTTTCAGAATCCAGTGAAGGATTCAACCGGAGTTCATCCAAATAAAAAGAGAGAAA
* * *
8824423 AAGAAGAGAAGGGGGAAGAGAGAGAGGGAGAAGAAAAATTCTATTGAAAATGCTGAGAATTAGAC
66 AAGAAAAGAAGGAGGAAGAAAGAGAGGGAGAAGAAAAATTCTATTGAAAATGCTGAGAATTAGAC
* *
8824488 TTATATACCTATTGAAAACGACATCATTTTGCGTCTAAGTAATTCCCAGGATC
131 TTATATACCTATTGAAAACGACATCATTTTACGTCTAAGTAAATCCCAGGATC
8824541 CGCGCATTTT
Statistics
Matches: 169, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
185 169 1.00
ACGTcount: A:0.41, C:0.12, G:0.24, T:0.23
Consensus pattern (185 bp):
CGATAAAGTTTTTCAGAATCCAGTGAAGGATTCAACCGGAGTTCATCCAAATAAAAAGAGAGAAA
AAGAAAAGAAGGAGGAAGAAAGAGAGGGAGAAGAAAAATTCTATTGAAAATGCTGAGAATTAGAC
TTATATACCTATTGAAAACGACATCATTTTACGTCTAAGTAAATCCCAGGATCTG
Found at i:8824860 original size:25 final size:25
Alignment explanation
Indices: 8824831--8824878 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
8824821 ATTAATTATT
8824831 AAATGATGAAATTTATA-AAAATTTC
1 AAATGAT-AAATTTATATAAAATTTC
* *
8824856 AAATGGTAAATTTTTATAAAATT
1 AAATGATAAATTTATATAAAATT
8824879 CATAGGTGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 8 0.40
25 12 0.60
ACGTcount: A:0.50, C:0.02, G:0.08, T:0.40
Consensus pattern (25 bp):
AAATGATAAATTTATATAAAATTTC
Found at i:8833630 original size:3 final size:3
Alignment explanation
Indices: 8833622--8833675 Score: 108
Period size: 3 Copynumber: 18.0 Consensus size: 3
8833612 AACAAAAGTA
8833622 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
8833670 AAT AAT
1 AAT AAT
8833676 TAAAAGGAAA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:8835980 original size:25 final size:25
Alignment explanation
Indices: 8835952--8836000 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
8835942 ATTTTAAATT
*
8835952 TAATATAAA-AATAAAATTTATTATC
1 TAATA-AAATAATAAAATATATTATC
8835977 TAATAAAATAATAAAATATATTAT
1 TAATAAAATAATAAAATATATTAT
8836001 TATATTAAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 3 0.14
25 19 0.86
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (25 bp):
TAATAAAATAATAAAATATATTATC
Found at i:8836025 original size:24 final size:24
Alignment explanation
Indices: 8835988--8836050 Score: 74
Period size: 24 Copynumber: 2.6 Consensus size: 24
8835978 AATAAAATAA
8835988 TAAAATATATTATTATATTA-AGAAT
1 TAAAA-ATATTATTATATTATA-AAT
*
8836013 TAAAAATATTATTATTTTATAAAT
1 TAAAAATATTATTATATTATAAAT
* *
8836037 TAAAATTTTTATTA
1 TAAAAATATTATTA
8836051 CATACAAGTT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
24 28 0.82
25 6 0.18
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (24 bp):
TAAAAATATTATTATATTATAAAT
Found at i:8836681 original size:18 final size:18
Alignment explanation
Indices: 8836658--8836692 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
8836648 TTTATTTAAA
8836658 AATAATTTAATAATTTTT
1 AATAATTTAATAATTTTT
*
8836676 AATAATTTATTAATTTT
1 AATAATTTAATAATTTT
8836693 ATAAATATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
AATAATTTAATAATTTTT
Found at i:8836735 original size:27 final size:27
Alignment explanation
Indices: 8836705--8836759 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
8836695 AAATATTAAA
*
8836705 TAATATATTTTTTATTAA-AATAATTTT
1 TAATATATTATTT-TTAATAATAATTTT
* *
8836732 TAATCTATTATTTTTAATGATAATTTT
1 TAATATATTATTTTTAATAATAATTTT
8836759 T
1 T
8836760 TTATTATAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 4 0.17
27 20 0.83
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (27 bp):
TAATATATTATTTTTAATAATAATTTT
Found at i:8837464 original size:67 final size:67
Alignment explanation
Indices: 8837382--8837520 Score: 199
Period size: 67 Copynumber: 2.1 Consensus size: 67
8837372 GGGGTGACTT
** *
8837382 AAAAAAAATTTTCTAGTGCAAGATCCAATAGATATGTATCAAAATTAAAAATTGATAATAAAAA-
1 AAAAAAAAAATTCTAGCGCAAGATCCAATAGATATGTATCAAAATTAAAAATTGATAA-AAAAAT
8837446 ATA
65 ATA
* **
8837449 AAAAAAAAAATTCTAGCGCAAGATTCAATAGATATGTATCAAAATTAAATTTTGATAAAAAAATA
1 AAAAAAAAAATTCTAGCGCAAGATCCAATAGATATGTATCAAAATTAAAAATTGATAAAAAAATA
*
8837514 TG
66 TA
8837516 AAAAA
1 AAAAA
8837521 TTATGTATGG
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
66 5 0.08
67 59 0.92
ACGTcount: A:0.56, C:0.07, G:0.09, T:0.27
Consensus pattern (67 bp):
AAAAAAAAAATTCTAGCGCAAGATCCAATAGATATGTATCAAAATTAAAAATTGATAAAAAAATA
TA
Found at i:8838774 original size:21 final size:21
Alignment explanation
Indices: 8838737--8838793 Score: 62
Period size: 21 Copynumber: 2.7 Consensus size: 21
8838727 TTAAAATTTC
* *
8838737 AAAAAACTTCAAAAAATGC-A
1 AAAAAAATTCTAAAAATGCTA
*
8838757 AAATAAAATTCTAAAAATTCTA
1 AAA-AAAATTCTAAAAATGCTA
*
8838779 AAAAAAATTTTAAAA
1 AAAAAAATTCTAAAA
8838794 TATTAAAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
20 3 0.10
21 24 0.77
22 4 0.13
ACGTcount: A:0.65, C:0.09, G:0.02, T:0.25
Consensus pattern (21 bp):
AAAAAAATTCTAAAAATGCTA
Found at i:8838802 original size:21 final size:21
Alignment explanation
Indices: 8838718--8838804 Score: 56
Period size: 21 Copynumber: 4.2 Consensus size: 21
8838708 CTTTCTTTTT
8838718 AAAAAAATTTTAAAAT-TT--
1 AAAAAAATTTTAAAATATTAA
* * * * *
8838736 CAAAAAACTTCAAAAAATGCAA
1 AAAAAAATTTTAAAATAT-TAA
* * *
8838758 AATAAAATTCTAAAA-ATTCTA
1 AAAAAAATTTTAAAATATT-AA
8838779 AAAAAAATTTTAAAATATTAA
1 AAAAAAATTTTAAAATATTAA
8838800 AAAAA
1 AAAAA
8838805 TTAATTTAAA
Statistics
Matches: 48, Mismatches: 15, Indels: 9
0.67 0.21 0.12
Matches are distributed among these distances:
18 12 0.25
19 1 0.02
21 22 0.46
22 13 0.27
ACGTcount: A:0.64, C:0.07, G:0.01, T:0.28
Consensus pattern (21 bp):
AAAAAAATTTTAAAATATTAA
Found at i:8838831 original size:12 final size:12
Alignment explanation
Indices: 8838810--8838842 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
8838800 AAAAATTAAT
8838810 TTAAAA-TTTTC
1 TTAAAATTTTTC
8838821 TTAAAATTTTTC
1 TTAAAATTTTTC
*
8838833 TAAAAATTTT
1 TTAAAATTTT
8838843 AAAATTTCTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
11 6 0.30
12 14 0.70
ACGTcount: A:0.39, C:0.06, G:0.00, T:0.55
Consensus pattern (12 bp):
TTAAAATTTTTC
Found at i:8838868 original size:30 final size:29
Alignment explanation
Indices: 8838807--8838926 Score: 89
Period size: 30 Copynumber: 4.0 Consensus size: 29
8838797 TAAAAAAATT
* *** *
8838807 AATTTAAAATTTTCTTAAAATTTTTCTAAA
1 AATTTTAAATTTTC-TAAAAGAATTCAAAA
*
8838837 AATTTTAAAATTTCTAAAAGATATAT-AAAA
1 AATTTTAAATTTTCTAAAAGA-AT-TCAAAA
* * *
8838867 AATTCATAAATTTTCAAAAAGAATTCTAAA
1 AATT-TTAAATTTTCTAAAAGAATTCAAAA
*
8838897 AATTTTCAAATTTTCTAAAAAAATTGCAAA
1 AATTTT-AAATTTTCTAAAAGAATT-CAAA
8838927 CTTATATAAG
Statistics
Matches: 70, Mismatches: 14, Indels: 11
0.74 0.15 0.12
Matches are distributed among these distances:
29 7 0.10
30 45 0.64
31 18 0.26
ACGTcount: A:0.51, C:0.07, G:0.03, T:0.39
Consensus pattern (29 bp):
AATTTTAAATTTTCTAAAAGAATTCAAAA
Found at i:8838892 original size:21 final size:21
Alignment explanation
Indices: 8838863--8838906 Score: 63
Period size: 22 Copynumber: 2.1 Consensus size: 21
8838853 AAAGATATAT
*
8838863 AAAAAATTC-ATAAATTTTCA
1 AAAAAATTCTAAAAATTTTCA
8838883 AAAAGAATTCTAAAAATTTTCA
1 AAAA-AATTCTAAAAATTTTCA
8838905 AA
1 AA
8838907 TTTTCTAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 4 0.19
21 5 0.24
22 12 0.57
ACGTcount: A:0.57, C:0.09, G:0.02, T:0.32
Consensus pattern (21 bp):
AAAAAATTCTAAAAATTTTCA
Found at i:8838917 original size:31 final size:31
Alignment explanation
Indices: 8838830--8838921 Score: 88
Period size: 31 Copynumber: 3.1 Consensus size: 31
8838820 CTTAAAATTT
*
8838830 TTCTAAAAATTTT-AAAATTTCT-AAAAG-A
1 TTCTAAAAATTTTCAAATTTTCTAAAAAGAA
* *
8838858 TATATAAAAA-ATTCATAAATTTTC-AAAAAGAA
1 T-TCTAAAAATTTTC--AAATTTTCTAAAAAGAA
8838890 TTCTAAAAATTTTCAAATTTTCTAAAAA-AA
1 TTCTAAAAATTTTCAAATTTTCTAAAAAGAA
8838920 TT
1 TT
8838922 GCAAACTTAT
Statistics
Matches: 51, Mismatches: 5, Indels: 14
0.73 0.07 0.20
Matches are distributed among these distances:
28 3 0.06
29 7 0.14
30 12 0.24
31 24 0.47
32 5 0.10
ACGTcount: A:0.52, C:0.08, G:0.02, T:0.38
Consensus pattern (31 bp):
TTCTAAAAATTTTCAAATTTTCTAAAAAGAA
Found at i:8839841 original size:18 final size:19
Alignment explanation
Indices: 8839785--8840050 Score: 105
Period size: 20 Copynumber: 13.7 Consensus size: 19
8839775 CTAATTCAAT
*
8839785 TTTTATAATTTTTTAAAAA
1 TTTTAGAATTTTTTAAAAA
**
8839804 TCTTTTAGAA-TTTAAAAAAA
1 --TTTTAGAATTTTTTAAAAA
* *
8839824 ATTTAGAATTTTTTAAAATT
1 TTTTAGAATTTTTTAAAA-A
* ** *
8839844 TTTTGGAAAATTTTAAAATC
1 TTTTAGAATTTTTTAAAA-A
* ** *
8839864 TTTTAAAATTTTTTTGAAC
1 TTTTAGAATTTTTTAAAAA
* *
8839883 TTTTATAAAATTTTTAGAAAA
1 TTTTA-GAATTTTTTA-AAAA
*
8839904 TTTTTAAGAA-TTTTTAAAAT
1 -TTTT-AGAATTTTTTAAAAA
* **
8839924 TTTTTGAA--TTAAAAAAA
1 TTTTAGAATTTTTTAAAAA
* * * **
8839941 ATTGA-ATATTTTTTGAACT
1 TTTTAGA-ATTTTTTAAAAA
* *
8839960 TTTTA-AATTTTTTTAGAAT
1 TTTTAGAA-TTTTTTAAAAA
* *
8839979 TTTTAG-ACTTTTAAAAAA
1 TTTTAGAATTTTTTAAAAA
*
8839997 TTTTAGAATTTTTCAAAAAA
1 TTTTAGAATTTTT-TAAAAA
*
8840017 TTTTAGAATTTTTCAAAAAA
1 TTTTAGAATTTTT-TAAAAA
8840037 TTTTAGAATTTTTT
1 TTTTAGAATTTTTT
8840051 TAGATTTTTG
Statistics
Matches: 185, Mismatches: 47, Indels: 28
0.71 0.18 0.11
Matches are distributed among these distances:
16 1 0.01
17 9 0.05
18 24 0.13
19 44 0.24
20 85 0.46
21 15 0.08
22 6 0.03
23 1 0.01
ACGTcount: A:0.41, C:0.03, G:0.06, T:0.51
Consensus pattern (19 bp):
TTTTAGAATTTTTTAAAAA
Found at i:8839853 original size:12 final size:10
Alignment explanation
Indices: 8839825--8839928 Score: 81
Period size: 10 Copynumber: 10.3 Consensus size: 10
8839815 TTAAAAAAAA
*
8839825 TTTAGAATTT
1 TTTAAAATTT
8839835 TTTAAAATTT
1 TTTAAAATTT
8839845 TTTGGAAAA--T
1 TTT--AAAATTT
*
8839855 TTTAAAATCT
1 TTTAAAATTT
8839865 TTTAAAATTTT
1 TTTAAAA-TTT
* *
8839876 TTTGAACTTT
1 TTTAAAATTT
*
8839886 TATAAAA-TT
1 TTTAAAATTT
*
8839895 TTTAGAAAATT
1 TTTA-AAATTT
8839906 TTTAAGAA-TT
1 TTTAA-AATTT
8839916 TTTAAAATTT
1 TTTAAAATTT
8839926 TTT
1 TTT
8839929 GAATTAAAAA
Statistics
Matches: 77, Mismatches: 8, Indels: 18
0.75 0.08 0.17
Matches are distributed among these distances:
8 4 0.05
9 7 0.09
10 47 0.61
11 15 0.19
12 4 0.05
ACGTcount: A:0.38, C:0.02, G:0.06, T:0.55
Consensus pattern (10 bp):
TTTAAAATTT
Found at i:8839870 original size:30 final size:29
Alignment explanation
Indices: 8839833--8839927 Score: 95
Period size: 30 Copynumber: 3.2 Consensus size: 29
8839823 AATTTAGAAT
8839833 TTTTTAAAATTTTTTGGAAAATTTTAAAA
1 TTTTTAAAATTTTTTGGAAAATTTTAAAA
* **
8839862 TCTTTTAAAATTTTTTTGAACTTTTATAAAA
1 T-TTTTAAAATTTTTTGGAAAATTT-TAAAA
*
8839893 TTTTTAGAAAATTTTT--AAGAATTTTTAAAA
1 TTTTTA-AAATTTTTTGGAA-AA-TTTTAAAA
8839923 TTTTT
1 TTTTT
8839928 TGAATTAAAA
Statistics
Matches: 55, Mismatches: 6, Indels: 9
0.79 0.09 0.13
Matches are distributed among these distances:
29 3 0.05
30 35 0.64
31 17 0.31
ACGTcount: A:0.38, C:0.02, G:0.05, T:0.55
Consensus pattern (29 bp):
TTTTTAAAATTTTTTGGAAAATTTTAAAA
Found at i:8839990 original size:19 final size:19
Alignment explanation
Indices: 8839949--8839990 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
8839939 AAATTGAATA
*
8839949 TTTTTTGAACTTTTTAAAT
1 TTTTTTGAACTTTTTAAAC
*
8839968 TTTTTTAGAA-TTTTTAGAC
1 TTTTTT-GAACTTTTTAAAC
8839987 TTTT
1 TTTT
8839991 AAAAAATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 17 0.85
20 3 0.15
ACGTcount: A:0.24, C:0.05, G:0.07, T:0.64
Consensus pattern (19 bp):
TTTTTTGAACTTTTTAAAC
Found at i:8840016 original size:20 final size:20
Alignment explanation
Indices: 8839987--8840049 Score: 119
Period size: 20 Copynumber: 3.2 Consensus size: 20
8839977 ATTTTTAGAC
8839987 TTTT-AAAAAATTTTAGAAT
1 TTTTCAAAAAATTTTAGAAT
8840006 TTTTCAAAAAATTTTAGAAT
1 TTTTCAAAAAATTTTAGAAT
8840026 TTTTCAAAAAATTTTAGAAT
1 TTTTCAAAAAATTTTAGAAT
8840046 TTTT
1 TTTT
8840050 TTAGATTTTT
Statistics
Matches: 43, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
19 4 0.09
20 39 0.91
ACGTcount: A:0.43, C:0.03, G:0.05, T:0.49
Consensus pattern (20 bp):
TTTTCAAAAAATTTTAGAAT
Found at i:8840076 original size:19 final size:19
Alignment explanation
Indices: 8840054--8840091 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
8840044 ATTTTTTTAG
*
8840054 ATTTTTGGTATAATATCCC
1 ATTTTTGGGATAATATCCC
*
8840073 ATTTTTGGGATAATGTCCC
1 ATTTTTGGGATAATATCCC
8840092 TTTATATATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.24, C:0.16, G:0.16, T:0.45
Consensus pattern (19 bp):
ATTTTTGGGATAATATCCC
Found at i:8840285 original size:11 final size:11
Alignment explanation
Indices: 8840265--8840313 Score: 50
Period size: 11 Copynumber: 4.5 Consensus size: 11
8840255 TGTTTTGAAT
8840265 TTTTTAAGAAAA
1 TTTTT-AGAAAA
8840277 TTTTTAG--AA
1 TTTTTAGAAAA
*
8840286 TTTTTTGAAAA
1 TTTTTAGAAAA
8840297 TTTTTA-AAAA
1 TTTTTAGAAAA
8840307 GTTTTTA
1 -TTTTTA
8840314 AATTTTTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
9 8 0.25
10 4 0.12
11 15 0.47
12 5 0.16
ACGTcount: A:0.39, C:0.00, G:0.08, T:0.53
Consensus pattern (11 bp):
TTTTTAGAAAA
Found at i:8840321 original size:10 final size:10
Alignment explanation
Indices: 8840262--8840327 Score: 51
Period size: 10 Copynumber: 6.2 Consensus size: 10
8840252 TTTTGTTTTG
8840262 AATTTTTTAAGA
1 AATTTTTT-A-A
* *
8840274 AAATTTTTAG
1 AATTTTTTAA
8840284 AATTTTTTGAA
1 AATTTTTT-AA
*
8840295 AATTTTTAAA
1 AATTTTTTAA
*
8840305 AAGTTTTTAA
1 AATTTTTTAA
*
8840315 ATTTTTTTTAA
1 A-ATTTTTTAA
8840326 AA
1 AA
8840328 AAATTTTAAA
Statistics
Matches: 42, Mismatches: 10, Indels: 6
0.72 0.17 0.10
Matches are distributed among these distances:
10 18 0.43
11 17 0.40
12 7 0.17
ACGTcount: A:0.41, C:0.00, G:0.06, T:0.53
Consensus pattern (10 bp):
AATTTTTTAA
Found at i:8840322 original size:22 final size:22
Alignment explanation
Indices: 8840297--8840341 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
8840287 TTTTTGAAAA
**
8840297 TTTTTAAAAAGTTTTTAAATTT
1 TTTTTAAAAAAATTTTAAATTT
8840319 TTTTTAAAAAAATTTTAAATTT
1 TTTTTAAAAAAATTTTAAATTT
8840341 T
1 T
8840342 AAAAAAAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (22 bp):
TTTTTAAAAAAATTTTAAATTT
Found at i:8840343 original size:18 final size:19
Alignment explanation
Indices: 8840320--8840360 Score: 66
Period size: 18 Copynumber: 2.2 Consensus size: 19
8840310 TTTAAATTTT
*
8840320 TTTTAAAAAAATTTTA-AA
1 TTTTAAAAAAAATTTATAA
8840338 TTTTAAAAAAAATTTATAA
1 TTTTAAAAAAAATTTATAA
8840357 TTTT
1 TTTT
8840361 TTGAATTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 15 0.71
19 6 0.29
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
TTTTAAAAAAAATTTATAA
Found at i:8840957 original size:2 final size:2
Alignment explanation
Indices: 8840950--8840982 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
8840940 CAAGTCTTTC
8840950 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8840983 TTTACAACTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8841592 original size:18 final size:16
Alignment explanation
Indices: 8841560--8841610 Score: 57
Period size: 18 Copynumber: 3.0 Consensus size: 16
8841550 TAACAATAAC
8841560 ATATTAATTATAAATT
1 ATATTAATTATAAATT
8841576 ATATTAATTTAATAAATT
1 ATATTAA-TT-ATAAATT
* *
8841594 TTATTACTTATAGAATT
1 ATATTAATTATA-AATT
8841611 TACAAGATAA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
16 10 0.33
17 8 0.27
18 12 0.40
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (16 bp):
ATATTAATTATAAATT
Found at i:8843008 original size:20 final size:21
Alignment explanation
Indices: 8842983--8843034 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 21
8842973 ATATAATTAT
*
8842983 ATATTTATATTT-TAAAAATA
1 ATATTTATATTTAAAAAAATA
8843003 ATATTTTATATTTAAAAAAATA
1 ATA-TTTATATTTAAAAAAATA
8843025 ATATTT-TATT
1 ATATTTATATT
8843035 AATTTCTAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
20 7 0.24
21 12 0.41
22 10 0.34
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (21 bp):
ATATTTATATTTAAAAAAATA
Found at i:8843036 original size:19 final size:22
Alignment explanation
Indices: 8842981--8843033 Score: 81
Period size: 22 Copynumber: 2.4 Consensus size: 22
8842971 ATATATAATT
*
8842981 ATATATTTATATTT-TAAAAATA
1 ATAT-TTTATATTTAAAAAAATA
8843003 ATATTTTATATTTAAAAAAATA
1 ATATTTTATATTTAAAAAAATA
8843025 ATATTTTAT
1 ATATTTTAT
8843034 TAATTTCTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
21 9 0.31
22 20 0.69
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (22 bp):
ATATTTTATATTTAAAAAAATA
Found at i:8843331 original size:15 final size:15
Alignment explanation
Indices: 8843289--8843330 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
8843279 GTTGTTTAAA
*
8843289 ATATTATTAAAATAT
1 ATATTTTTAAAATAT
*
8843304 TTATTTTTAAAATAT
1 ATATTTTTAAAATAT
8843319 ATATGTTTTAAA
1 ATAT-TTTTAAA
8843331 TTAAAATCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
15 16 0.70
16 7 0.30
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (15 bp):
ATATTTTTAAAATAT
Found at i:8843726 original size:18 final size:18
Alignment explanation
Indices: 8843705--8843766 Score: 54
Period size: 18 Copynumber: 3.4 Consensus size: 18
8843695 TGATCGGAAT
8843705 AAATATATTTGAATAAAA
1 AAATATATTTGAATAAAA
**
8843723 AAATATGA-TTGTTTAAATA
1 AAATAT-ATTTGAATAAA-A
* * *
8843742 AAATTTATTTAAACAAAA
1 AAATATATTTGAATAAAA
8843760 AAATATA
1 AAATATA
8843767 ACCATAAAGA
Statistics
Matches: 33, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
18 21 0.64
19 12 0.36
ACGTcount: A:0.58, C:0.02, G:0.05, T:0.35
Consensus pattern (18 bp):
AAATATATTTGAATAAAA
Found at i:8846958 original size:2 final size:2
Alignment explanation
Indices: 8846946--8846978 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
8846936 TACATGTTTA
*
8846946 AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8846979 AATAATTAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8851692 original size:24 final size:25
Alignment explanation
Indices: 8851647--8851697 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 25
8851637 AACATGACAC
** * *
8851647 TTTATCTTTTTTTTTTTCAAAATTT
1 TTTATCTTTTTTAATTTAAAAAATT
8851672 TTTAT-TTTTTTAATTTAAAAAATT
1 TTTATCTTTTTTAATTTAAAAAATT
8851696 TT
1 TT
8851698 CTAAAAAAAC
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
24 17 0.77
25 5 0.23
ACGTcount: A:0.27, C:0.04, G:0.00, T:0.69
Consensus pattern (25 bp):
TTTATCTTTTTTAATTTAAAAAATT
Found at i:8852143 original size:20 final size:21
Alignment explanation
Indices: 8852107--8852158 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
8852097 CCCGAAATTA
8852107 ATAAAATATTATTTTTTAAAAT
1 ATAAAATATTA-TTTTTAAAAT
*
8852129 ATAAAATATTATTTTTTAAAT
1 ATAAAATATTATTTTTAAAAT
8852150 AT-AAATATT
1 ATAAAATATT
8852159 TAAAAATATC
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 7 0.24
21 11 0.38
22 11 0.38
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (21 bp):
ATAAAATATTATTTTTAAAAT
Found at i:8852149 original size:21 final size:22
Alignment explanation
Indices: 8852107--8852158 Score: 90
Period size: 22 Copynumber: 2.5 Consensus size: 22
8852097 CCCGAAATTA
8852107 ATAAAATATTATTTTTTAAAAT
1 ATAAAATATTATTTTTTAAAAT
8852129 ATAAAATATTATTTTTT-AAAT
1 ATAAAATATTATTTTTTAAAAT
8852150 AT-AAATATT
1 ATAAAATATT
8852159 TAAAAATATC
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
20 7 0.23
21 6 0.20
22 17 0.57
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (22 bp):
ATAAAATATTATTTTTTAAAAT
Found at i:8852193 original size:30 final size:30
Alignment explanation
Indices: 8852125--8852195 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 30
8852115 TTATTTTTTA
* * *
8852125 AAATATAAAATATTATTTTTTAAATATAAAT
1 AAATA-AAAATATCATTATATAAATATAAAT
** *
8852156 ATTTAAAAATATCATTATATAAATATATAT
1 AAATAAAAATATCATTATATAAATATAAAT
8852186 AAATAAAAAT
1 AAATAAAAAT
8852196 TAAAAAATTA
Statistics
Matches: 32, Mismatches: 8, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
30 29 0.91
31 3 0.09
ACGTcount: A:0.58, C:0.01, G:0.00, T:0.41
Consensus pattern (30 bp):
AAATAAAAATATCATTATATAAATATAAAT
Found at i:8852618 original size:20 final size:20
Alignment explanation
Indices: 8852589--8852648 Score: 66
Period size: 20 Copynumber: 3.0 Consensus size: 20
8852579 TTATCTCATT
*
8852589 AAAAAGAAAAAAAAGCAAAA
1 AAAAAAAAAAAAAAGCAAAA
** *
8852609 AAAAAAAAAAAATGGCTAAA
1 AAAAAAAAAAAAAAGCAAAA
* *
8852629 AAAAAAAAGAAAAAGGAAAA
1 AAAAAAAAAAAAAAGCAAAA
8852649 TAAGCCAAAA
Statistics
Matches: 31, Mismatches: 9, Indels: 0
0.77 0.22 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.82, C:0.03, G:0.12, T:0.03
Consensus pattern (20 bp):
AAAAAAAAAAAAAAGCAAAA
Found at i:8853614 original size:11 final size:10
Alignment explanation
Indices: 8853599--8853661 Score: 54
Period size: 10 Copynumber: 6.0 Consensus size: 10
8853589 AATAAATATG
*
8853599 GAAAAAAATA
1 GAAAAAAAAA
8853609 GAAAAAAAAA
1 GAAAAAAAAA
8853619 GAAAAAGGAAAA
1 GAAAAA--AAAA
* *
8853631 GGAAAAGAAA
1 GAAAAAAAAA
* *
8853641 GAATAAAAAT
1 GAAAAAAAAA
8853651 GAAAAGAAAAA
1 GAAAA-AAAAA
8853662 AGAACTTATT
Statistics
Matches: 41, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
10 28 0.68
11 4 0.10
12 9 0.22
ACGTcount: A:0.78, C:0.00, G:0.17, T:0.05
Consensus pattern (10 bp):
GAAAAAAAAA
Found at i:8855866 original size:17 final size:17
Alignment explanation
Indices: 8855837--8855879 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
8855827 TTATTTTAAT
8855837 AAAAAAT-AA-AAAAGA
1 AAAAAATAAAGAAAAGA
8855852 AAAAAATAAAGAAAAGA
1 AAAAAATAAAGAAAAGA
*
8855869 GAAAAATAAAG
1 AAAAAATAAAG
8855880 CTCATTGGAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
15 7 0.28
16 2 0.08
17 16 0.64
ACGTcount: A:0.81, C:0.00, G:0.12, T:0.07
Consensus pattern (17 bp):
AAAAAATAAAGAAAAGA
Found at i:8856241 original size:12 final size:12
Alignment explanation
Indices: 8856196--8856242 Score: 58
Period size: 12 Copynumber: 3.9 Consensus size: 12
8856186 AGAGAGTATT
*
8856196 TTAAATATAAAA
1 TTAAATATATAA
*
8856208 TTAAATAAATAA
1 TTAAATATATAA
*
8856220 TTAAAAATATAA
1 TTAAATATATAA
*
8856232 TTTAATATATA
1 TTAAATATATA
8856243 CAGTCAAGGT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 29 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (12 bp):
TTAAATATATAA
Found at i:8856744 original size:10 final size:10
Alignment explanation
Indices: 8856716--8856748 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
8856706 TTAAAAAGTT
8856716 AAAATATTTA
1 AAAATATTTA
8856726 AAAAT-TTTA
1 AAAATATTTA
*
8856735 TAAATATTTA
1 AAAATATTTA
8856745 AAAA
1 AAAA
8856749 GAGAAAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
9 8 0.40
10 12 0.60
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (10 bp):
AAAATATTTA
Found at i:8857504 original size:23 final size:24
Alignment explanation
Indices: 8857448--8857504 Score: 57
Period size: 23 Copynumber: 2.5 Consensus size: 24
8857438 AGTACTTTTT
8857448 CTTAATAA-AATTTTATCATTATC
1 CTTAATAATAATTTTATCATTATC
** *
8857471 CTTTTTTATAATTTTAT-ATT-TAC
1 CTTAATAATAATTTTATCATTAT-C
8857494 CTTAATAATAA
1 CTTAATAATAA
8857505 GTTAGCAATT
Statistics
Matches: 26, Mismatches: 6, Indels: 4
0.72 0.17 0.11
Matches are distributed among these distances:
22 1 0.04
23 17 0.65
24 8 0.31
ACGTcount: A:0.37, C:0.11, G:0.00, T:0.53
Consensus pattern (24 bp):
CTTAATAATAATTTTATCATTATC
Found at i:8860476 original size:14 final size:15
Alignment explanation
Indices: 8860457--8860489 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
8860447 ATTTAATAAC
*
8860457 TTTTTTTTCA-AAAT
1 TTTTTTTTAAGAAAT
8860471 TTTTTTTTAAGAAAT
1 TTTTTTTTAAGAAAT
8860486 TTTT
1 TTTT
8860490 AATAAAAATC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 9 0.53
15 8 0.47
ACGTcount: A:0.27, C:0.03, G:0.03, T:0.67
Consensus pattern (15 bp):
TTTTTTTTAAGAAAT
Found at i:8861714 original size:61 final size:61
Alignment explanation
Indices: 8861639--8861753 Score: 203
Period size: 61 Copynumber: 1.9 Consensus size: 61
8861629 TTCATTATTT
8861639 ATGCATCACTATAAGGCAAACATTAACTCATGCATCCATTCATGCAATCATTTGTTCATTC
1 ATGCATCACTATAAGGCAAACATTAACTCATGCATCCATTCATGCAATCATTTGTTCATTC
* * *
8861700 ATGCATCATTATAAGGCAAACATTAACTCATGCATCCATTCATGTAGTCATTTG
1 ATGCATCACTATAAGGCAAACATTAACTCATGCATCCATTCATGCAATCATTTG
8861754 CCAATCCATG
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
61 51 1.00
ACGTcount: A:0.33, C:0.23, G:0.11, T:0.33
Consensus pattern (61 bp):
ATGCATCACTATAAGGCAAACATTAACTCATGCATCCATTCATGCAATCATTTGTTCATTC
Found at i:8861764 original size:61 final size:61
Alignment explanation
Indices: 8861639--8861771 Score: 196
Period size: 61 Copynumber: 2.2 Consensus size: 61
8861629 TTCATTATTT
* * *
8861639 ATGCATCACTATAAGGCAAACATTAACTCATGCATCCATTCATGCAATCATTTGTTCATTC
1 ATGCATCATTATAAGGCAAACATTAACTCATGCATCCATTCATGCAATCATTTGTCCATCC
* *
8861700 ATGCATCATTATAAGGCAAACATTAACTCATGCATCCATTCATGTAGTCATTTG-CCAATCC
1 ATGCATCATTATAAGGCAAACATTAACTCATGCATCCATTCATGCAATCATTTGTCC-ATCC
*
8861761 ATGCTTCATTA
1 ATGCATCATTA
8861772 AATTGTTATG
Statistics
Matches: 65, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
60 1 0.02
61 64 0.98
ACGTcount: A:0.32, C:0.24, G:0.11, T:0.33
Consensus pattern (61 bp):
ATGCATCATTATAAGGCAAACATTAACTCATGCATCCATTCATGCAATCATTTGTCCATCC
Found at i:8864252 original size:22 final size:20
Alignment explanation
Indices: 8864215--8864256 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 20
8864205 GCTTGAGTTG
8864215 CAAAAAAAAAAAAAAAAAAC
1 CAAAAAAAAAAAAAAAAAAC
8864235 CAAAAAAATGAAAGAAAAAAAA
1 CAAAAAAA--AAA-AAAAAAAA
8864257 ATGATTATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 8 0.42
22 3 0.16
23 8 0.42
ACGTcount: A:0.86, C:0.07, G:0.05, T:0.02
Consensus pattern (20 bp):
CAAAAAAAAAAAAAAAAAAC
Found at i:8864649 original size:19 final size:19
Alignment explanation
Indices: 8864602--8864663 Score: 63
Period size: 19 Copynumber: 3.3 Consensus size: 19
8864592 GTTTGAATGT
* *
8864602 GAAAAAATAAAGAAAAAAA
1 GAAAAAAAAAAGAATAAAA
* *
8864621 TG-AAAAAAAATGGATAAAA
1 -GAAAAAAAAAAGAATAAAA
*
8864640 GAAAAAAAAAAGAATAAAT
1 GAAAAAAAAAAGAATAAAA
8864659 GAAAA
1 GAAAA
8864664 TACATGTTTT
Statistics
Matches: 34, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
18 1 0.03
19 32 0.94
20 1 0.03
ACGTcount: A:0.77, C:0.00, G:0.13, T:0.10
Consensus pattern (19 bp):
GAAAAAAAAAAGAATAAAA
Found at i:8865074 original size:39 final size:39
Alignment explanation
Indices: 8865031--8865106 Score: 134
Period size: 39 Copynumber: 1.9 Consensus size: 39
8865021 AATCTTTGAA
*
8865031 AAATTCAAATAGATGAACCCCAATCTAAAGATTTGTTAG
1 AAATTCAAATAGATGAACCACAATCTAAAGATTTGTTAG
*
8865070 AAATTCAAATAGATGAACCATAATCTAAAGATTTGTT
1 AAATTCAAATAGATGAACCACAATCTAAAGATTTGTT
8865107 TTAAAATTTA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.45, C:0.13, G:0.12, T:0.30
Consensus pattern (39 bp):
AAATTCAAATAGATGAACCACAATCTAAAGATTTGTTAG
Found at i:8866326 original size:23 final size:23
Alignment explanation
Indices: 8866300--8866369 Score: 63
Period size: 23 Copynumber: 3.1 Consensus size: 23
8866290 TGAGCATAAC
8866300 TTATAAGA-ACTCTAGGTATAATT
1 TTATAAGACA-TCTAGGTATAATT
* *
8866323 TTATAAGGCATCTGGGTATAATT
1 TTATAAGACATCTAGGTATAATT
* * * *
8866346 TT-TAAGGCTTCTAAGCATAATT
1 TTATAAGACATCTAGGTATAATT
8866368 TT
1 TT
8866370 CAAGGCCTCC
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
22 18 0.45
23 21 0.52
24 1 0.03
ACGTcount: A:0.33, C:0.10, G:0.16, T:0.41
Consensus pattern (23 bp):
TTATAAGACATCTAGGTATAATT
Found at i:8866365 original size:22 final size:22
Alignment explanation
Indices: 8866140--8866389 Score: 74
Period size: 22 Copynumber: 11.3 Consensus size: 22
8866130 ATATTCGGGT
*
8866140 ATAATTTGTAAGGCCTTC-AAGC
1 ATAATTTTTAAGG-CTTCTAAGC
* *
8866162 ATAATTCCTTAAGACTTCTAAGC
1 ATAATT-TTTAAGGCTTCTAAGC
* * * * *
8866185 ATGACTTGTAAGACTT-TCAGAC
1 ATAATTTTTAAGGCTTCTAAG-C
* * **
8866207 ATAATTTATAAGGCTTCAAAAT
1 ATAATTTTTAAGGCTTCTAAGC
* * * *
8866229 ATAATTTTCAAGGTTTTTAGGC
1 ATAATTTTTAAGGCTTCTAAGC
* * ***
8866251 ATAATTTGTAAGGCCTCCGGGC
1 ATAATTTTTAAGGCTTCTAAGC
* ** * * *
8866273 ATAATTCTTAAAACCTATGAGC
1 ATAATTTTTAAGGCTTCTAAGC
* * * * *
8866295 ATAACTTATAAGAAC-TCTAGGT
1 ATAATTTTTAAG-GCTTCTAAGC
* ** *
8866317 ATAATTTTATAAGGCATCTGGGT
1 ATAATTTT-TAAGGCTTCTAAGC
8866340 ATAATTTTTAAGGCTTCTAAGC
1 ATAATTTTTAAGGCTTCTAAGC
* * * *
8866362 ATAATTTTCAAGGCCTCCAAGG
1 ATAATTTTTAAGGCTTCTAAGC
8866384 ATAATT
1 ATAATT
8866390 CTCAAGAGCT
Statistics
Matches: 163, Mismatches: 58, Indels: 14
0.69 0.25 0.06
Matches are distributed among these distances:
21 3 0.02
22 127 0.78
23 33 0.20
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.35
Consensus pattern (22 bp):
ATAATTTTTAAGGCTTCTAAGC
Found at i:8866453 original size:22 final size:21
Alignment explanation
Indices: 8866362--8866456 Score: 59
Period size: 22 Copynumber: 4.3 Consensus size: 21
8866352 GCTTCTAAGC
* *
8866362 ATAATTTTCAAGGCCTCCAAGG
1 ATAATTTTCAAGACCTCC-GGG
* *
8866384 ATAATTCTCAAGAGCTCC-GG
1 ATAATTTTCAAGACCTCCGGG
* *
8866404 ATATGATTTGT-AAGACTTTCGGG
1 ATA--ATTT-TCAAGACCTCCGGG
*
8866427 CATAATTTTTAAGACCTCCGAGG
1 -ATAATTTTCAAGACCTCCG-GG
8866450 ATAATTT
1 ATAATTT
8866457 CAGAAAAATT
Statistics
Matches: 57, Mismatches: 9, Indels: 14
0.71 0.11 0.17
Matches are distributed among these distances:
20 5 0.09
21 1 0.02
22 43 0.75
23 5 0.09
24 3 0.05
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.33
Consensus pattern (21 bp):
ATAATTTTCAAGACCTCCGGG
Found at i:8869669 original size:14 final size:15
Alignment explanation
Indices: 8869652--8869689 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
8869642 TTTTTTAATT
*
8869652 TTTTTACTTT-TTAC
1 TTTTTAATTTCTTAC
*
8869666 TTTTTAATTTCTTAT
1 TTTTTAATTTCTTAC
8869681 TTTTTAATT
1 TTTTTAATT
8869690 AGATAAATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 9 0.43
15 12 0.57
ACGTcount: A:0.18, C:0.08, G:0.00, T:0.74
Consensus pattern (15 bp):
TTTTTAATTTCTTAC
Found at i:8890624 original size:2 final size:2
Alignment explanation
Indices: 8890617--8890656 Score: 66
Period size: 2 Copynumber: 21.0 Consensus size: 2
8890607 CTCAACATGA
8890617 AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT A- AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8890657 TATGAGAACA
Statistics
Matches: 36, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
1 2 0.06
2 34 0.94
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8900982 original size:34 final size:34
Alignment explanation
Indices: 8900916--8900982 Score: 82
Period size: 34 Copynumber: 2.0 Consensus size: 34
8900906 ATTTTAACAG
* *
8900916 TATTTGTATCTAAAAAATACTACTAATTTGATGA
1 TATTTGTATCTAAAAAATACCACTAATATGATGA
* *
8900950 TATTTGTAT-TGAAAAAATGCCATTAATATGATG
1 TATTTGTATCT-AAAAAATACCACTAATATGATG
8900983 TCATTTATAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
33 1 0.04
34 27 0.96
ACGTcount: A:0.40, C:0.07, G:0.12, T:0.40
Consensus pattern (34 bp):
TATTTGTATCTAAAAAATACCACTAATATGATGA
Found at i:8901045 original size:33 final size:33
Alignment explanation
Indices: 8901008--8901125 Score: 91
Period size: 33 Copynumber: 3.6 Consensus size: 33
8900998 GACACTACTA
* *
8901008 AATTAGTGGCA-TTTGTATTATAAAAATGTTGCT
1 AATTAGTGGCACTTT-TATGATAAAAATGTCGCT
* *
8901041 AATTAGTGGCACTTTTATGATAACAGTGTCGCT
1 AATTAGTGGCACTTTTATGATAAAAATGTCGCT
* * * * *
8901074 AATT--TAGCGACTTTTTTTATAAGAATGCCGCT
1 AATTAGTGGC-ACTTTTATGATAAAAATGTCGCT
8901106 ACATTTAGTGGCA-TTTTATG
1 A-A-TTAGTGGCACTTTTATG
8901126 GTATAAACGT
Statistics
Matches: 66, Mismatches: 13, Indels: 11
0.73 0.14 0.12
Matches are distributed among these distances:
31 3 0.05
32 19 0.29
33 30 0.45
34 10 0.15
35 1 0.02
36 3 0.05
ACGTcount: A:0.29, C:0.12, G:0.19, T:0.41
Consensus pattern (33 bp):
AATTAGTGGCACTTTTATGATAAAAATGTCGCT
Found at i:8902845 original size:161 final size:160
Alignment explanation
Indices: 8902409--8902866 Score: 496
Period size: 161 Copynumber: 2.9 Consensus size: 160
8902399 TCATTTTGGC
* * * *
8902409 TTTTCACACATATCAA-TCATAGAAACCAAATTCAATTA-TTTGGACAAGTTTAATATCATGGAT
1 TTTTCACACATATCAACT-GTAAAAACCAAGTTCAA-TACTTTGGACAAGTTTAATATCATGTAT
* * ** * * *
8902472 TGAAGCCATCCAAACTGTTAAAAGCCATTCAA-AAGTTTAATTTGTATTTTTACCTCTAAAAGGC
64 TGAAGCTATCCAAACTGTTAAAA-CAAAACAATAACTTTAATTTGTATTTTTACCTATTAAAGGC
* *
8902536 A-AAAATAGTTTCAAATAGATGTAAACGATAACT
128 ACAAAA-AGTCTCAAATAGATGTAAACAATAACT
* * *
8902569 TTTTCACACATATCAATTGTAAAAACCAAGTTCAAT-CATTCGGACAAATTTAATATCATGTATT
1 TTTTCACACATATCAACTGTAAAAACCAAGTTCAATAC-TTTGGACAAGTTTAATATCATGTATT
* * ** *
8902633 GAAGCTATCCAAACTGTTAAAATAGAACAATAACAATATTTTTGTATTTTTACCTATTAAAGGCA
65 GAAGCTATCCAAACTGTTAAAACAAAACAATAACTTTA-ATTTGTATTTTTACCTATTAAAGGCA
8902698 CAAAAAGTC-CTAAATAGATGTAAACAATAACT
129 CAAAAAGTCTC-AAATAGATGTAAACAATAACT
* * * * *
8902730 TTTTTATACATATCAACTGTGAAAACTAAGTTCAATACTTTGGATAAGTTTAATATCATGTATTG
1 TTTTCACACATATCAACTGTAAAAACCAAGTTCAATACTTTGGACAAGTTTAATATCATGTATTG
* * * * ** * *
8902795 AAACTATCAAAACTATTAAAACAAAACAATGACTGTTAATTTACATTTTTACCTTTTAATGGCAC
66 AAGCTATCCAAACTGTTAAAACAAAACAATAACT-TTAATTTGTATTTTTACCTATTAAAGGCAC
8902860 AAAAAGT
130 AAAAAGT
8902867 TCATTCATTC
Statistics
Matches: 248, Mismatches: 41, Indels: 17
0.81 0.13 0.06
Matches are distributed among these distances:
159 4 0.02
160 79 0.32
161 158 0.64
162 7 0.03
ACGTcount: A:0.41, C:0.15, G:0.10, T:0.34
Consensus pattern (160 bp):
TTTTCACACATATCAACTGTAAAAACCAAGTTCAATACTTTGGACAAGTTTAATATCATGTATTG
AAGCTATCCAAACTGTTAAAACAAAACAATAACTTTAATTTGTATTTTTACCTATTAAAGGCACA
AAAAGTCTCAAATAGATGTAAACAATAACT
Found at i:8903292 original size:247 final size:247
Alignment explanation
Indices: 8902856--8903348 Score: 869
Period size: 247 Copynumber: 2.0 Consensus size: 247
8902846 CCTTTTAATG
* *
8902856 GCACAAAAAGTTCATTCATTCAAATAAGTTTAAAATCATAAACTTACTATTTCCTTTTGCTTTCC
1 GCACAAAAAGTTCATTCATTCAAATAAGTTTAAAATAACAAACTTACTATTTCCTTTTGCTTTCC
* *
8902921 TGCAAAACTTTTTGATTCACTTGTATGGCTATATTTCTGTTGCTTTTTGAAATCAATCCCAATAT
66 TGCAAAACTTTTTGATCCACTTGTATGGCTATATTTCTGTTGCTTTTTGAAACCAATCCCAATAT
*
8902986 GTTCTTTTTCCTATCATAAAAAAAATTGCATATATGGTAAAAATACAAATATTACCAACTTAAAA
131 GTTCTTTTTCCTATCATAAAAAAAATTACATATATGGTAAAAATACAAATATTACCAACTTAAAA
* *
8903051 CATAAAATACTTTTATTATTTAAAACTAATATACAAAGTTATAAATTAGTAA
196 CATAAAACACTTTTATTATTTAAAACTAATACACAAAGTTATAAATTAGTAA
* *
8903103 GCACAAAAAGTTCATTCATTCGAATAAGTTTAAAATAACAAACTTACTATTTCCTTTTGCTTTCT
1 GCACAAAAAGTTCATTCATTCAAATAAGTTTAAAATAACAAACTTACTATTTCCTTTTGCTTTCC
* **
8903168 TGCAAAACTTTTTGATCCACTTGTATGGCTATATTTCTGTTGTTTTTTGCTACCAATCCCAATAT
66 TGCAAAACTTTTTGATCCACTTGTATGGCTATATTTCTGTTGCTTTTTGAAACCAATCCCAATAT
8903233 GTTCTTTTTCCTATCATAAAAAAAATTACATATATGGTAAAAATACAAATATTACCAACTTAAAA
131 GTTCTTTTTCCTATCATAAAAAAAATTACATATATGGTAAAAATACAAATATTACCAACTTAAAA
*
8903298 CATAAAACATTTTTATTATTTAAAACTAATACACAAAGTTATAAATTAGTA
196 CATAAAACACTTTTATTATTTAAAACTAATACACAAAGTTATAAATTAGTA
8903349 CCTCTCCTTT
Statistics
Matches: 233, Mismatches: 13, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
247 233 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (247 bp):
GCACAAAAAGTTCATTCATTCAAATAAGTTTAAAATAACAAACTTACTATTTCCTTTTGCTTTCC
TGCAAAACTTTTTGATCCACTTGTATGGCTATATTTCTGTTGCTTTTTGAAACCAATCCCAATAT
GTTCTTTTTCCTATCATAAAAAAAATTACATATATGGTAAAAATACAAATATTACCAACTTAAAA
CATAAAACACTTTTATTATTTAAAACTAATACACAAAGTTATAAATTAGTAA
Found at i:8909668 original size:186 final size:189
Alignment explanation
Indices: 8909347--8909711 Score: 486
Period size: 186 Copynumber: 1.9 Consensus size: 189
8909337 TAAAAAATGC
* *
8909347 CTTCAATAAATTCCTTTTAAAAGTTTTTTGAGATTATTAAAGGCGTCTTTTAGTAAAAAAAAACA
1 CTTCAATAAATTCCTTTTAAAAGTCTTTTGAGATTATTAAAGACGTCTTTTAGT--AAAAAAACA
* * * *
8909412 CCTTCAATAATCTCATAGTAAAATTTTAAGCGGATTATTGAAGACATTTTTTATTACAAACGCCT
64 CCTTCAATAATATCATAGTAAAATTTTAAGCGGATCATTGAAGACATTTTTTACTACAAACACCT
*
8909477 TTACTAATTCCCTTAAG-TTTTTTGAA-AGAATTTATTGAATGCATTTTTCACATAGTAAAA
129 TTACTAATTCCCTTAAGTTTTTTTGAAGA-AATTTATTGAAGGCATTTTTCACATAGTAAAA
** * * * *
8909537 CTTCAAT-AATTTTTTTTTAAAGTCTTTTGGGATTATTAAAGATGTCTTTTAGT-AAAAAATACC
1 CTTCAATAAATTCCTTTTAAAAGTCTTTTGAGATTATTAAAGACGTCTTTTAGTAAAAAAACACC
* * * * * *
8909600 TTTAATAATATCGTAGTAAAATTTTAAGCGGATCATTGAAGGCGTTTTTTACTACAAATACTTTT
66 TTCAATAATATCATAGTAAAATTTTAAGCGGATCATTGAAGACATTTTTTACTACAAACACCTTT
**
8909665 ACTAATTCTTTTAAGTTTTTTTGAAGAAATTTATTGAAGGCATTTTT
131 ACTAATTCCCTTAAGTTTTTTTGAAGAAATTTATTGAAGGCATTTTT
8909712 TTGCATAATA
Statistics
Matches: 152, Mismatches: 21, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
186 77 0.51
187 28 0.18
188 1 0.01
189 39 0.26
190 7 0.05
ACGTcount: A:0.35, C:0.11, G:0.12, T:0.42
Consensus pattern (189 bp):
CTTCAATAAATTCCTTTTAAAAGTCTTTTGAGATTATTAAAGACGTCTTTTAGTAAAAAAACACC
TTCAATAATATCATAGTAAAATTTTAAGCGGATCATTGAAGACATTTTTTACTACAAACACCTTT
ACTAATTCCCTTAAGTTTTTTTGAAGAAATTTATTGAAGGCATTTTTCACATAGTAAAA
Found at i:8911062 original size:28 final size:28
Alignment explanation
Indices: 8911003--8911064 Score: 79
Period size: 28 Copynumber: 2.2 Consensus size: 28
8910993 TGGTTTTTTG
* * *
8911003 AATGATATTGTATGATATTATTTTGCTG
1 AATGATATTGTATGATATTAGTTTACTA
* *
8911031 AATGGTATTGTATGATATTGGTTTACTA
1 AATGATATTGTATGATATTAGTTTACTA
8911059 AATGAT
1 AATGAT
8911065 TTCTTGAATG
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.31, C:0.03, G:0.19, T:0.47
Consensus pattern (28 bp):
AATGATATTGTATGATATTAGTTTACTA
Found at i:8911087 original size:25 final size:25
Alignment explanation
Indices: 8911059--8911110 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
8911049 TGGTTTACTA
* *
8911059 AATGATTT-CTTGAATGTTGTTTTTG
1 AATGATTTGC-TGAATGGTATTTTTG
*
8911084 AATGGTTTGCTGAATGGTATTTTTG
1 AATGATTTGCTGAATGGTATTTTTG
8911109 AA
1 AA
8911111 CACATTGCTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 22 0.96
26 1 0.04
ACGTcount: A:0.23, C:0.04, G:0.23, T:0.50
Consensus pattern (25 bp):
AATGATTTGCTGAATGGTATTTTTG
Found at i:8914325 original size:35 final size:35
Alignment explanation
Indices: 8914279--8914355 Score: 111
Period size: 35 Copynumber: 2.2 Consensus size: 35
8914269 ATATATAAAC
*
8914279 CAAATATTTTCTAGG-CATAAACTTACAACTGACTT
1 CAAATATTTTCT-GGACATAAACCTACAACTGACTT
*
8914314 CAAATGTTTTCTGGACATAAACCTACAACTGACTT
1 CAAATATTTTCTGGACATAAACCTACAACTGACTT
*
8914349 CATATAT
1 CAAATAT
8914356 ATAATTAAAC
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
34 2 0.05
35 35 0.95
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (35 bp):
CAAATATTTTCTGGACATAAACCTACAACTGACTT
Found at i:8914538 original size:64 final size:62
Alignment explanation
Indices: 8914466--8914661 Score: 173
Period size: 64 Copynumber: 3.1 Consensus size: 62
8914456 TCAAAACTGC
* *
8914466 CTTCAATAATCCAATATAAAAATTTATTGAGTGGATTATTTAAGGTATTTTAGGCAAAAAAC-A
1 CTTCAATAATCC-ATATAAAAATTTATTGATTGGATTATTGAAGGTATTTT-GGCAAAAAACGA
* ** * *** * *
8914529 CATTCAATAATCCGT-TCCAACTTTATTGATTGGATTATTGAAAACATTTTGG-ACCAAAACTGT
1 C-TTCAATAATCCATATAAAAATTTATTGATTGGATTATTGAAGGTATTTTGGCA-AAAAAC-GA
* * * *
8914592 CTTCAATAATCCCTTATAAAAATTTATTGATTGGATTATTGAAGGTTTTTTTGGCCAAAAACGC
1 CTTCAATAAT-CCATATAAAAATTTATTGATTGGATTATTGAAGG-TATTTTGGCAAAAAACGA
8914656 CTTCAA
1 CTTCAA
8914662 GAATTTGTTC
Statistics
Matches: 103, Mismatches: 22, Indels: 15
0.74 0.16 0.11
Matches are distributed among these distances:
60 1 0.01
61 7 0.07
62 36 0.35
63 6 0.06
64 42 0.41
65 11 0.11
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.37
Consensus pattern (62 bp):
CTTCAATAATCCATATAAAAATTTATTGATTGGATTATTGAAGGTATTTTGGCAAAAAACGA
Found at i:8914704 original size:126 final size:126
Alignment explanation
Indices: 8914437--8914665 Score: 305
Period size: 126 Copynumber: 1.8 Consensus size: 126
8914427 TAACAAAATG
* * *
8914437 TTATTGAAGGCGTTTTTGATCAAAACTGCCTTCAATAATCCAATATAAAAATTTATTGAGTGGAT
1 TTATTGAAGGCATTTTGGACCAAAACTGCCTTCAATAATCCAATATAAAAATTTATTGAGTGGAT
* * *
8914502 TATTTAAGGTATTTTAGGCAAAAAACACATTCAATAATCCGTTCCAACTTTATTGATTGGA
66 TATTGAAGGTATTTTAGGCAAAAAACACATTCAAGAATCCGTTCCAACTTTATTGATTGAA
** * ** *
8914563 TTATTGAAAACATTTTGGACCAAAACTGTCTTCAATAATCCCTTATAAAAATTTATTGATTGGAT
1 TTATTGAAGGCATTTTGGACCAAAACTGCCTTCAATAATCCAATATAAAAATTTATTGAGTGGAT
* * * * *
8914628 TATTGAAGGTTTTTTTGGCCAAAAACGCCTTCAAGAAT
66 TATTGAAGGTATTTTAGGCAAAAAACACATTCAAGAAT
8914666 TTGTTCTTAA
Statistics
Matches: 87, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
126 87 1.00
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.37
Consensus pattern (126 bp):
TTATTGAAGGCATTTTGGACCAAAACTGCCTTCAATAATCCAATATAAAAATTTATTGAGTGGAT
TATTGAAGGTATTTTAGGCAAAAAACACATTCAAGAATCCGTTCCAACTTTATTGATTGAA
Found at i:8914806 original size:14 final size:14
Alignment explanation
Indices: 8914787--8914822 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
8914777 AAACACTTTG
8914787 AATAAT-CTCTTACA
1 AATAATCCT-TTACA
8914801 AATAATCCTTTACA
1 AATAATCCTTTACA
8914815 AATAATCC
1 AATAATCC
8914823 CTTCAAAAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 19 0.90
15 2 0.10
ACGTcount: A:0.44, C:0.22, G:0.00, T:0.33
Consensus pattern (14 bp):
AATAATCCTTTACA
Found at i:8919006 original size:5 final size:5
Alignment explanation
Indices: 8918970--8919019 Score: 52
Period size: 5 Copynumber: 10.2 Consensus size: 5
8918960 AGGAAAGAAC
*
8918970 AAAGA AATA-A AAAGA AAGAGA AAA-A TAA-A AAAGA AAAGA AAAGA AAAGA
1 AAAGA AA-AGA AAAGA AA-AGA AAAGA AAAGA AAAGA AAAGA AAAGA AAAGA
8919019 A
1 A
8919020 GATCGAAAAG
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
4 7 0.18
5 26 0.67
6 6 0.15
ACGTcount: A:0.80, C:0.00, G:0.16, T:0.04
Consensus pattern (5 bp):
AAAGA
Found at i:8919021 original size:18 final size:19
Alignment explanation
Indices: 8918974--8919011 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
8918964 AAGAACAAAG
8918974 AAAT-AAAAAGAAAGAGAA
1 AAATAAAAAAGAAAGAGAA
8918992 AAATAAAAAAGAAA-AGAA
1 AAATAAAAAAGAAAGAGAA
8919010 AA
1 AA
8919012 GAAAAGAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 10 0.53
19 9 0.47
ACGTcount: A:0.82, C:0.00, G:0.13, T:0.05
Consensus pattern (19 bp):
AAATAAAAAAGAAAGAGAA
Found at i:8923688 original size:14 final size:15
Alignment explanation
Indices: 8923660--8923690 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
8923650 TCAATCTGAA
8923660 TAAAATATATATAAT
1 TAAAATATATATAAT
8923675 TAAAATAT-TATAAT
1 TAAAATATATATAAT
8923689 TA
1 TA
8923691 TATGTGTATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.50
15 8 0.50
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (15 bp):
TAAAATATATATAAT
Found at i:8928807 original size:340 final size:340
Alignment explanation
Indices: 8928187--8928871 Score: 1325
Period size: 340 Copynumber: 2.0 Consensus size: 340
8928177 GTTTTGTACC
8928187 AAAAAGAGATAGATGCAATAAAACGATCAATTTTTTCTTTTACAAGAAGAGGTCAAATTATTTCA
1 AAAAAGAGATAGATGCAATAAAACGATCAATTTTTTCTTTTACAAGAAGAGGTCAAATTATTTCA
8928252 AATAATAGAAAAAAAGAGTTTAAGATAATTATAGGTTTATAACAACTAAAATTTAAAAGGACTCA
66 AATAATAGAAAAAAAGAGTTTAAGATAATTATAGGTTTATAACAACTAAAATTTAAAAGGACTCA
8928317 AATTGAAAACAGAATGAAACTTTAGAAGAAAATTTGGCATTTTCACAAAAATACAAAAATATATT
131 AATTGAAAACAGAATGAAACTTTAGAAGAAAATTTGGCATTTTCACAAAAATACAAAAATATATT
8928382 ACTAATTTTTAAAGTCTATAGTATAATTTTTGAAAGGATCCCCAATACATAAGGTATCGTAACGA
196 ACTAATTTTTAAAGTCTATAGTATAATTTTTGAAAGGATCCCCAATACATAAGGTATCGTAACGA
8928447 TTTTGAGGCTACTAAATAAATTTGAAAACAAAAAGAAATCATTATTAATATTTTTTGATTGATAC
261 TTTTGAGGCTACTAAATAAATTTGAAAACAAAAAGAAATCATTATTAATATTTTTTGATTGATAC
*
8928512 GATTTGTTACCTATT
326 GATTGGTTACCTATT
* *
8928527 AAAAAGAGATAGATGCAATAAAATGATCAATTTTTTTTTTTACAAGAAGAGGTCAAATTATTTCA
1 AAAAAGAGATAGATGCAATAAAACGATCAATTTTTTCTTTTACAAGAAGAGGTCAAATTATTTCA
8928592 AATAATAGAAAAAAAGAGTTTAAGATAATTATAGGTTTATAACAACTAAAATTTAAAAGGACTCA
66 AATAATAGAAAAAAAGAGTTTAAGATAATTATAGGTTTATAACAACTAAAATTTAAAAGGACTCA
*
8928657 AATTGAAAACAGAATGAAACTTTAGAAGAAAATTTGGCATTTTCACAAAAATACAAAAGTATATT
131 AATTGAAAACAGAATGAAACTTTAGAAGAAAATTTGGCATTTTCACAAAAATACAAAAATATATT
*
8928722 ACTATTTTTTAAAGTCTATAGTATAATTTTTGAAAGGATCCCCAATACATAAGGTATCGTAACGA
196 ACTAATTTTTAAAGTCTATAGTATAATTTTTGAAAGGATCCCCAATACATAAGGTATCGTAACGA
8928787 TTTTGAGGCTACTAAATAAATTTGAAAACAAAAAGAAATCATTATTAATATTTTTTGATTGATAC
261 TTTTGAGGCTACTAAATAAATTTGAAAACAAAAAGAAATCATTATTAATATTTTTTGATTGATAC
8928852 GATTGGTTACCTATT
326 GATTGGTTACCTATT
8928867 AAAAA
1 AAAAA
8928872 TTATCTTTTT
Statistics
Matches: 340, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
340 340 1.00
ACGTcount: A:0.45, C:0.09, G:0.13, T:0.33
Consensus pattern (340 bp):
AAAAAGAGATAGATGCAATAAAACGATCAATTTTTTCTTTTACAAGAAGAGGTCAAATTATTTCA
AATAATAGAAAAAAAGAGTTTAAGATAATTATAGGTTTATAACAACTAAAATTTAAAAGGACTCA
AATTGAAAACAGAATGAAACTTTAGAAGAAAATTTGGCATTTTCACAAAAATACAAAAATATATT
ACTAATTTTTAAAGTCTATAGTATAATTTTTGAAAGGATCCCCAATACATAAGGTATCGTAACGA
TTTTGAGGCTACTAAATAAATTTGAAAACAAAAAGAAATCATTATTAATATTTTTTGATTGATAC
GATTGGTTACCTATT
Done.