Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19866354
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 74000 characters in sequence are not A, C, G, or T
File 36 of 100
Found at i:9583600 original size:9 final size:9
Alignment explanation
Indices: 9583579--9583611 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
9583569 TTTATAAGCA
9583579 TTTTA-TAT
1 TTTTATTAT
*
9583587 ATTTATTAT
1 TTTTATTAT
9583596 TTTTATTAT
1 TTTTATTAT
9583605 TTTTATT
1 TTTTATT
9583612 CTGTAAGGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
8 4 0.18
9 18 0.82
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (9 bp):
TTTTATTAT
Found at i:9583695 original size:22 final size:21
Alignment explanation
Indices: 9583661--9583701 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
9583651 TCATTACTTA
*
9583661 TTTTTATTATTATTTTTATAT
1 TTTTTATTATTATTATTATAT
*
9583682 TTTTTCATTTTTATTATTAT
1 TTTTT-ATTATTATTATTAT
9583702 TAAAAACAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 5 0.29
22 12 0.71
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.76
Consensus pattern (21 bp):
TTTTTATTATTATTATTATAT
Found at i:9583979 original size:26 final size:27
Alignment explanation
Indices: 9583950--9584016 Score: 100
Period size: 28 Copynumber: 2.5 Consensus size: 27
9583940 TGGGATCTCG
*
9583950 TTTTATATATTAAGTTAATATAAATTTT
1 TTTTATATATTAAGTTAATATAAA-TAT
9583978 TTTTATATATTAAGTTAATATAAA-AT
1 TTTTATATATTAAGTTAATATAAATAT
*
9584004 TTTAATATATTAA
1 TTTTATATATTAA
9584017 AATAAATTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
26 13 0.35
28 24 0.65
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (27 bp):
TTTTATATATTAAGTTAATATAAATAT
Found at i:9583981 original size:28 final size:28
Alignment explanation
Indices: 9583950--9584006 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
9583940 TGGGATCTCG
*
9583950 TTTTATATATTAAGTTAATATAAATTTT
1 TTTTATATATTAAGTTAATATAAAATTT
9583978 TTTTATATATTAAGTTAATATAAAATTT
1 TTTTATATATTAAGTTAATATAAAATTT
9584006 T
1 T
9584007 AATATATTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (28 bp):
TTTTATATATTAAGTTAATATAAAATTT
Found at i:9584078 original size:18 final size:18
Alignment explanation
Indices: 9584051--9584092 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
9584041 ATTTTTATTT
9584051 TATA-AAAATTTAA-AAAA
1 TATATAAAA-TTAATAAAA
9584068 TATATAAAATTAATAAAA
1 TATATAAAATTAATAAAA
9584086 TATATAA
1 TATATAA
9584093 TACATTCTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 8 0.35
18 15 0.65
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (18 bp):
TATATAAAATTAATAAAA
Found at i:9586079 original size:17 final size:18
Alignment explanation
Indices: 9586054--9586088 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
9586044 AACATTCATG
*
9586054 AAAATATTATTTTTTAAT
1 AAAATATTATATTTTAAT
9586072 AAAA-ATTATATTTTAAT
1 AAAATATTATATTTTAAT
9586089 TATATATAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
AAAATATTATATTTTAAT
Found at i:9587099 original size:16 final size:15
Alignment explanation
Indices: 9587078--9587120 Score: 59
Period size: 15 Copynumber: 2.8 Consensus size: 15
9587068 TTTAATCTAT
*
9587078 AAATTAAAAAGAACTA
1 AAATTAAAAA-AACAA
*
9587094 AAATTAAAAATACAA
1 AAATTAAAAAAACAA
9587109 AAATTAAAAAAA
1 AAATTAAAAAAA
9587121 ACCAAGAATC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
15 14 0.58
16 10 0.42
ACGTcount: A:0.74, C:0.05, G:0.02, T:0.19
Consensus pattern (15 bp):
AAATTAAAAAAACAA
Found at i:9592980 original size:9 final size:9
Alignment explanation
Indices: 9592963--9593005 Score: 50
Period size: 9 Copynumber: 4.8 Consensus size: 9
9592953 ATTTTTTTAT
9592963 TTTATAAAA
1 TTTATAAAA
*
9592972 TTTAAAAAA
1 TTTATAAAA
*
9592981 TATATAAAA
1 TTTATAAAA
*
9592990 TTAATAAAA
1 TTTATAAAA
*
9592999 TATATAA
1 TTTATAA
9593006 TACATTCTTA
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
9 27 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (9 bp):
TTTATAAAA
Found at i:9592986 original size:18 final size:18
Alignment explanation
Indices: 9592965--9593005 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
9592955 TTTTTTATTT
9592965 TATAAAATTTAA-AAAATA
1 TATAAAA-TTAATAAAATA
9592983 TATAAAATTAATAAAATA
1 TATAAAATTAATAAAATA
9593001 TATAA
1 TATAA
9593006 TACATTCTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 4 0.18
18 18 0.82
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (18 bp):
TATAAAATTAATAAAATA
Found at i:9593081 original size:13 final size:13
Alignment explanation
Indices: 9593063--9593092 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
9593053 AATCCAAACC
*
9593063 TAATATATATATT
1 TAATATATAAATT
9593076 TAATATATAAATT
1 TAATATATAAATT
9593089 TAAT
1 TAAT
9593093 TCAAAAAAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (13 bp):
TAATATATAAATT
Found at i:9594993 original size:17 final size:18
Alignment explanation
Indices: 9594968--9595002 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
9594958 AACATTCATG
*
9594968 AAAATATTATTTTTTAAT
1 AAAATATTATATTTTAAT
9594986 AAAA-ATTATATTTTAAT
1 AAAATATTATATTTTAAT
9595003 TATATATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
AAAATATTATATTTTAAT
Found at i:9596203 original size:14 final size:14
Alignment explanation
Indices: 9596176--9596219 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 14
9596166 AATATTTATT
*
9596176 AAATATAAA-TAAA
1 AAATAAAAAGTAAA
*
9596189 AAA-ATAAAGTAAA
1 AAATAAAAAGTAAA
9596202 AAATAAAAAGTAAA
1 AAATAAAAAGTAAA
9596216 AAAT
1 AAAT
9596220 TAGAGAAGTC
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
12 5 0.18
13 10 0.36
14 13 0.46
ACGTcount: A:0.77, C:0.00, G:0.05, T:0.18
Consensus pattern (14 bp):
AAATAAAAAGTAAA
Found at i:9602707 original size:8 final size:8
Alignment explanation
Indices: 9602652--9602717 Score: 56
Period size: 8 Copynumber: 9.0 Consensus size: 8
9602642 TTCAAGCTTA
*
9602652 ATTATTTA
1 ATTATTTT
9602660 ATTA-TTT
1 ATTATTTT
9602667 A-TATTTT
1 ATTATTTT
9602674 A-TATTTT
1 ATTATTTT
*
9602681 A-T-TTCT
1 ATTATTTT
9602687 ATGT-TTTT
1 AT-TATTTT
9602695 A-TATTTT
1 ATTATTTT
9602702 ATTATTTT
1 ATTATTTT
9602710 ATTATTTT
1 ATTATTTT
9602718 TATCTTATTT
Statistics
Matches: 50, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
6 7 0.14
7 20 0.40
8 23 0.46
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.71
Consensus pattern (8 bp):
ATTATTTT
Found at i:9606077 original size:23 final size:24
Alignment explanation
Indices: 9606033--9606080 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
9606023 TAAATAAATC
* **
9606033 TTTATATTTTAATGTAGCTTTTAA
1 TTTATATTTAAATAAAGCTTTTAA
9606057 TTTATATTTAAATAAAG-TTTTAA
1 TTTATATTTAAATAAAGCTTTTAA
9606080 T
1 T
9606081 CTTTAATTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 7 0.33
24 14 0.67
ACGTcount: A:0.35, C:0.02, G:0.06, T:0.56
Consensus pattern (24 bp):
TTTATATTTAAATAAAGCTTTTAA
Found at i:9618678 original size:24 final size:22
Alignment explanation
Indices: 9618646--9618703 Score: 68
Period size: 22 Copynumber: 2.7 Consensus size: 22
9618636 GTATCTTAAT
9618646 TTAATAAAATAATATATTTATA
1 TTAATAAAATAATATATTTATA
*
9618668 TATAATTAAAAT-ATA-ATTTTTA
1 T-TAA-TAAAATAATATATTTATA
9618690 TTAA-AAAATAATAT
1 TTAATAAAATAATAT
9618704 TTTCATGAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 9
0.76 0.02 0.22
Matches are distributed among these distances:
19 5 0.16
20 3 0.10
21 3 0.10
22 8 0.26
23 6 0.19
24 6 0.19
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (22 bp):
TTAATAAAATAATATATTTATA
Found at i:9618694 original size:17 final size:18
Alignment explanation
Indices: 9618672--9618706 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
9618662 TTTATATATA
*
9618672 ATTAAAATATAAT-TTTT
1 ATTAAAAAATAATATTTT
9618689 ATTAAAAAATAATATTTT
1 ATTAAAAAATAATATTTT
9618707 CATGAATGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
ATTAAAAAATAATATTTT
Found at i:9618705 original size:19 final size:21
Alignment explanation
Indices: 9618646--9618706 Score: 65
Period size: 19 Copynumber: 2.9 Consensus size: 21
9618636 GTATCTTAAT
9618646 TTAATAAAATAATATATTTATA
1 TTAATAAAATAATAT-TTTATA
9618668 TATAATTAAAAT-ATAATTTT-TA
1 T-TAA-TAAAATAAT-ATTTTATA
9618690 TTAA-AAAATAATATTTT
1 TTAATAAAATAATATTTT
9618707 CATGAATGTT
Statistics
Matches: 35, Mismatches: 0, Indels: 11
0.76 0.00 0.24
Matches are distributed among these distances:
19 10 0.29
20 2 0.06
21 3 0.09
22 4 0.11
23 8 0.23
24 8 0.23
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (21 bp):
TTAATAAAATAATATTTTATA
Found at i:9620703 original size:19 final size:18
Alignment explanation
Indices: 9620679--9620721 Score: 61
Period size: 19 Copynumber: 2.4 Consensus size: 18
9620669 AAAGAATGAA
*
9620679 TTATATATTTTTATTAATT
1 TTATATATTTTT-TAAATT
9620698 TTATATATTTTTTAAATT
1 TTATATATTTTTTAAATT
9620716 TT-TATA
1 TTATATA
9620722 AAATAAAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 4 0.17
18 7 0.30
19 12 0.52
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (18 bp):
TTATATATTTTTTAAATT
Found at i:9620827 original size:22 final size:24
Alignment explanation
Indices: 9620802--9620853 Score: 63
Period size: 22 Copynumber: 2.2 Consensus size: 24
9620792 AAAATTTATA
*
9620802 AATCGATAAA-TCAAATCAA-TTG
1 AATCGATAAATTCAAATAAATTTG
* *
9620824 AATCAATAAATTCAATTAAATTTG
1 AATCGATAAATTCAAATAAATTTG
9620848 AATCGA
1 AATCGA
9620854 ATTGTACGAA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
22 9 0.38
23 7 0.29
24 8 0.33
ACGTcount: A:0.50, C:0.12, G:0.08, T:0.31
Consensus pattern (24 bp):
AATCGATAAATTCAAATAAATTTG
Found at i:9621797 original size:8 final size:8
Alignment explanation
Indices: 9621788--9621818 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
9621778 AAAATAAAAT
*
9621788 ATATATAT
1 ATATATAC
9621796 ATATATAC
1 ATATATAC
9621804 ATATATAC
1 ATATATAC
9621812 ATATATA
1 ATATATA
9621819 AAGAAACTAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (8 bp):
ATATATAC
Found at i:9624848 original size:8 final size:8
Alignment explanation
Indices: 9624837--9624861 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
9624827 TAAATATTAA
9624837 AATTTTAT
1 AATTTTAT
9624845 AATTTTAT
1 AATTTTAT
9624853 AATTTTAT
1 AATTTTAT
9624861 A
1 A
9624862 TTTAAATTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (8 bp):
AATTTTAT
Found at i:9624887 original size:24 final size:23
Alignment explanation
Indices: 9624856--9624900 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
9624846 ATTTTATAAT
9624856 TTTATATT-TAAATTGAATTTTCA
1 TTTATATTATAAATTG-ATTTTCA
*
9624879 TTTATTATTATTAATTGATTTT
1 TTTA-TATTATAAATTGATTTT
9624901 AAATTAAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 4 0.21
24 9 0.47
25 6 0.32
ACGTcount: A:0.31, C:0.02, G:0.04, T:0.62
Consensus pattern (23 bp):
TTTATATTATAAATTGATTTTCA
Found at i:9626543 original size:30 final size:29
Alignment explanation
Indices: 9626439--9626544 Score: 106
Period size: 30 Copynumber: 3.5 Consensus size: 29
9626429 AAGAGTTATG
9626439 TTAAAGATTTATTT-AACTATAAATTAAAAA
1 TTAAA-ATTTATTTGAA-TATAAATTAAAAA
* *
9626469 TTAAGAATTTATTTAAATATAAATTAAAAG
1 TTAA-AATTTATTTGAATATAAATTAAAAA
* * * *
9626499 GTACAGATTTATTTGAATGTAAATTAAAAT
1 TTA-AAATTTATTTGAATATAAATTAAAAA
9626529 TTAAAATTTTATTTGA
1 TTAAAA-TTTATTTGA
9626545 GTGCAAAAAT
Statistics
Matches: 64, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
29 2 0.03
30 58 0.91
31 4 0.06
ACGTcount: A:0.48, C:0.02, G:0.08, T:0.42
Consensus pattern (29 bp):
TTAAAATTTATTTGAATATAAATTAAAAA
Found at i:9632483 original size:333 final size:331
Alignment explanation
Indices: 9631877--9632768 Score: 1158
Period size: 333 Copynumber: 2.7 Consensus size: 331
9631867 AATTTCTTTT
** ** * * * *
9631877 AGAAATTATTGAAGGTGTTGGTATCTGAAACCGCCTTCAGTAATTATATACAAACTGTGATAGGA
1 AGAAATTATTGAAGGCATTATTTTCTGAAACCACCTTCAGTCATTATATACAAACTGTGAGAGGA
* * *
9631942 ATTATTAAA-GACATCTATCTTAAATATACGCCTTCAATAATAGTGTTATAATTTATGTGGTGGT
66 ATTATTAAATG-CGTCTATCTTAAATATACGCCTTCAATAATAGTGTTACAATTTGTGTGGTGGT
* *
9632006 ATATAGAAGGTATTTTATAGTAGAAGACGCTGTTACTAATTCTTAAAATATTTAGTGAGAAAATT
130 ATATAAAAGGTATTTTATAGTAGAAGACGC-GTTACTAATTCCTAAAATATTTAGTGA-AAAATT
** * * * **
9632071 TTGAAAACATCTGTTATTAAGAAACGCTTTCAGTAATTAAAGGTGCCTTTACTAATAAATGCCTT
193 TTGAAGGCATCTATTTTTAAGAAACGCCTTCAGTAATTAAAGACGCCTTTACTAATAAATGCCTT
* *
9632136 CTATTAACTACTAGCTATATCGATGGCATTTTATAATAAAAGACACATTTAATAAGCCTGAAAAC
258 CCATTAACTACTAGCTATATCGAAGGCATTTTATAATAAAAGACACATTTAATAAGCCTGAAAAC
9632201 TTTTATTAG
323 TTTTATTAG
* * * * *
9632210 AGAAATTATTGAAGGCATTATTTTCTAAAACCACCTTCAGTCACTATATAAAAATTGTGAGAGGT
1 AGAAATTATTGAAGGCATTATTTTCTGAAACCACCTTCAGTCATTATATACAAACTGTGAGAGGA
* * *
9632275 ATTATTAAATGTGTTTATCTTAAATATACGCCTTTAATAATAGTGTTACAATTTGTGTGGTGGTA
66 ATTATTAAATGCGTCTATCTTAAATATACGCCTTCAATAATAGTGTTACAATTTGTGTGGTGGTA
* *
9632340 TATATAAGGTATTTTATAGTAGAAGACGTCGTTACTAATTCCCAAAATATTTAGTGGAAAAATTT
131 TATAAAAGGTATTTTATAGTAGAAGACG-CGTTACTAATTCCTAAAATATTTAGT-GAAAAATTT
* * *
9632405 TGAAGGCATCTATTTTTAAGAAACGCCTTCAGTAATTGAATACGCCTTTTCTAATAAATGCCTTC
194 TGAAGGCATCTATTTTTAAGAAACGCCTTCAGTAATTAAAGACGCCTTTACTAATAAATGCCTTC
* ** *
9632470 CATTAACTACTAGCTATATCGAAGGCGTTTTATAATAAAAGATGCCTTTAATAAGCCTGAAAACT
259 CATTAACTACTAGCTATATCGAAGGCATTTTATAATAAAAGACACATTTAATAAGCCTGAAAACT
9632535 TTTATTAG
324 TTTATTAG
* * *
9632543 AGAAAATTATTGAAGGCTTTATTTTCTGAAACTACCTTCAGTCATTATATACAAACTGTGAGAAG
1 AG-AAATTATTGAAGGCATTATTTTCTGAAACCACCTTCAGTCATTATATACAAACTGTGAGAGG
* * * * * *
9632608 AATTATTAAATGCGTCTATCTTAAATATACGCCTTCAATAACAGTTTTACAATATGTGTAGCGAT
65 AATTATTAAATGCGTCTATCTTAAATATACGCCTTCAATAATAGTGTTACAATTTGTGTGGTGGT
* * * * * *
9632673 ATATAAAAGGTATTTTACAATAGAAGATAC-CTTTAGTAATTTCTAAAATATTTAGTCAAAAAAT
130 ATATAAAAGGTATTTTATAGTAGAAG--ACGCGTTACTAATTCCTAAAATATTTAGT-GAAAAAT
* * * * *
9632737 TTTAAAGGCGTCTATTTCTAACAAACACCTTC
192 TTTGAAGGCATCTATTTTTAAGAAACGCCTTC
9632769 TATAATGGAT
Statistics
Matches: 484, Mismatches: 69, Indels: 11
0.86 0.12 0.02
Matches are distributed among these distances:
333 290 0.60
334 192 0.40
336 2 0.00
ACGTcount: A:0.37, C:0.13, G:0.14, T:0.36
Consensus pattern (331 bp):
AGAAATTATTGAAGGCATTATTTTCTGAAACCACCTTCAGTCATTATATACAAACTGTGAGAGGA
ATTATTAAATGCGTCTATCTTAAATATACGCCTTCAATAATAGTGTTACAATTTGTGTGGTGGTA
TATAAAAGGTATTTTATAGTAGAAGACGCGTTACTAATTCCTAAAATATTTAGTGAAAAATTTTG
AAGGCATCTATTTTTAAGAAACGCCTTCAGTAATTAAAGACGCCTTTACTAATAAATGCCTTCCA
TTAACTACTAGCTATATCGAAGGCATTTTATAATAAAAGACACATTTAATAAGCCTGAAAACTTT
TATTAG
Found at i:9642861 original size:51 final size:52
Alignment explanation
Indices: 9642797--9643053 Score: 138
Period size: 51 Copynumber: 4.8 Consensus size: 52
9642787 TTTTGAAATT
*
9642797 AATTTTTTGTTTAAAGAAAATTGATATTTCAACTTTTTTCTCAAATTCTT-A
1 AATTTTTTATTTAAAGAAAATTGATATTTCAACTTTTTTCTCAAATTCTTAA
* * ** * * *
9642848 AATTTTTTATTTAAGGAAAATTCAATATTT-TGC-TTTTCCTTAGAATTTTTAA
1 AATTTTTTATTTAAAGAAAATT-GATATTTCAACTTTTTTCTCA-AATTCTTAA
* * * *
9642900 AATTATTTTTTATTCAAGCAAAACATTGATACTTT-AACTTTTTTCT-AATTTTTTGAA
1 AATT-TTTTAT-TTAAAG--AAA-ATTGATA-TTTCAACTTTTTTCTCAAATTCTT-AA
* * * * **
9642957 ATTATTTTTTA-TTAAATAAAATTTAATATTTCAACTTTTTCCTTAAAAACTT--
1 A--ATTTTTTATTTAAAGAAAA-TTGATATTTCAACTTTTTTCTCAAATTCTTAA
*
9643009 --TTTATTTAATTTAAGAAAAAATTGATATTTCAACTTTTTTCTCAA
1 AATTT-TTT-ATTTAA-AGAAAATTGATATTTCAACTTTTTTCTCAA
9643054 TTTTTTCCTC
Statistics
Matches: 157, Mismatches: 29, Indels: 40
0.69 0.13 0.18
Matches are distributed among these distances:
48 3 0.02
49 3 0.02
50 8 0.05
51 52 0.33
52 16 0.10
53 9 0.06
54 22 0.14
55 4 0.03
56 16 0.10
57 11 0.07
58 10 0.06
59 3 0.02
ACGTcount: A:0.35, C:0.09, G:0.05, T:0.51
Consensus pattern (52 bp):
AATTTTTTATTTAAAGAAAATTGATATTTCAACTTTTTTCTCAAATTCTTAA
Found at i:9644365 original size:9 final size:8
Alignment explanation
Indices: 9644353--9644425 Score: 57
Period size: 8 Copynumber: 9.6 Consensus size: 8
9644343 GATAAATAAG
9644353 ATAAAAAT
1 ATAAAAAT
9644361 A-ATAAAAT
1 ATA-AAAAT
*
9644369 ATAAAAAC
1 ATAAAAAT
*
9644377 ATAAAAAC
1 ATAAAAAT
*
9644385 ATAAAAAC
1 ATAAAAAT
*
9644393 ATAAAAAC
1 ATAAAAAT
*
9644401 AT-AGAA-
1 ATAAAAAT
9644407 AT-AAAAT
1 ATAAAAAT
9644414 AT-AAAAT
1 ATAAAAAT
9644421 ATAAA
1 ATAAA
9644426 TAATTAATAA
Statistics
Matches: 58, Mismatches: 3, Indels: 8
0.84 0.04 0.12
Matches are distributed among these distances:
6 5 0.09
7 13 0.22
8 39 0.67
9 1 0.02
ACGTcount: A:0.74, C:0.05, G:0.01, T:0.19
Consensus pattern (8 bp):
ATAAAAAT
Found at i:9644383 original size:16 final size:16
Alignment explanation
Indices: 9644364--9644403 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
9644354 TAAAAATAAT
*
9644364 AAAATATAAAAACATA
1 AAAACATAAAAACATA
9644380 AAAACATAAAAACATA
1 AAAACATAAAAACATA
9644396 AAAACATA
1 AAAACATA
9644404 GAAATAAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.75, C:0.10, G:0.00, T:0.15
Consensus pattern (16 bp):
AAAACATAAAAACATA
Found at i:9650119 original size:23 final size:21
Alignment explanation
Indices: 9650085--9650132 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 21
9650075 TTTTCTAAAA
*
9650085 AATTATTTGATTGCTATAAGTGG
1 AATTATTTGATT--TATAAGAGG
9650108 AATT-TTTAGATTTATAAGAGG
1 AATTATTT-GATTTATAAGAGG
9650129 AATT
1 AATT
9650133 GAAAAAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
21 12 0.52
22 3 0.13
23 8 0.35
ACGTcount: A:0.35, C:0.02, G:0.19, T:0.44
Consensus pattern (21 bp):
AATTATTTGATTTATAAGAGG
Found at i:9650556 original size:22 final size:23
Alignment explanation
Indices: 9650506--9650555 Score: 68
Period size: 23 Copynumber: 2.3 Consensus size: 23
9650496 AAAAAATCTT
*
9650506 AAAAAATAATTTTAAAATATATA
1 AAAAAAGAATTTTAAAATATATA
*
9650529 AAAAAAGAGTTTT-AAATAT-TA
1 AAAAAAGAATTTTAAAATATATA
9650550 AAAAAA
1 AAAAAA
9650556 ATAGGACATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 8 0.32
22 6 0.24
23 11 0.44
ACGTcount: A:0.66, C:0.00, G:0.04, T:0.30
Consensus pattern (23 bp):
AAAAAAGAATTTTAAAATATATA
Found at i:9650556 original size:23 final size:23
Alignment explanation
Indices: 9650506--9650556 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 23
9650496 AAAAAATCTT
* *
9650506 AAAAAATAATTTTAAAATATATA
1 AAAAAAGAATTTTAAAATATAAA
* *
9650529 AAAAAAGAGTTTT-AAATATTAA
1 AAAAAAGAATTTTAAAATATAAA
9650551 AAAAAA
1 AAAAAA
9650557 TAGGACATAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
22 13 0.54
23 11 0.46
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.29
Consensus pattern (23 bp):
AAAAAAGAATTTTAAAATATAAA
Found at i:9654069 original size:13 final size:13
Alignment explanation
Indices: 9654051--9654080 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
9654041 CTTTTTTTGA
*
9654051 ATTAAATTTATAT
1 ATTAAATATATAT
9654064 ATTAAATATATAT
1 ATTAAATATATAT
9654077 ATTA
1 ATTA
9654081 GGTTCGGATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (13 bp):
ATTAAATATATAT
Found at i:9654166 original size:20 final size:19
Alignment explanation
Indices: 9654141--9654184 Score: 70
Period size: 20 Copynumber: 2.3 Consensus size: 19
9654131 TAAGAATGAA
*
9654141 TTATATATTTTTATTAATTT
1 TTATATATTTTT-TAAATTT
9654161 TTATATATTTTTTAAATTT
1 TTATATATTTTTTAAATTT
9654180 TTATA
1 TTATA
9654185 AAATAAAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 11 0.48
20 12 0.52
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (19 bp):
TTATATATTTTTTAAATTT
Found at i:9654188 original size:11 final size:10
Alignment explanation
Indices: 9654141--9654186 Score: 58
Period size: 10 Copynumber: 4.7 Consensus size: 10
9654131 TAAGAATGAA
*
9654141 TTATATATTT
1 TTATAAATTT
*
9654151 TTATTAATTT
1 TTATAAATTT
*
9654161 TTATATATTT
1 TTATAAATTT
9654171 TT-TAAATTT
1 TTATAAATTT
9654180 TTATAAA
1 TTATAAA
9654187 ATAAAAATAA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
9 8 0.27
10 22 0.73
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (10 bp):
TTATAAATTT
Found at i:9654242 original size:17 final size:17
Alignment explanation
Indices: 9654222--9654255 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
9654212 ATTTTATATT
*
9654222 AAAATAATATATATAAA
1 AAAATAAAATATATAAA
*
9654239 AAAATAAAATTTATAAA
1 AAAATAAAATATATAAA
9654256 TCAATAAATC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
AAAATAAAATATATAAA
Found at i:9656881 original size:20 final size:20
Alignment explanation
Indices: 9656853--9656916 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
9656843 AAATTTAAGG
*
9656853 TAAATTATATTATTGATTAT
1 TAAAATATATTATTGATTAT
* *
9656873 TAAAATATAGTT-GTG-TTTT
1 TAAAATATA-TTATTGATTAT
*
9656892 TAAAATA-ATTATTAAATTAT
1 TAAAATATATTATT-GATTAT
9656912 TAAAA
1 TAAAA
9656917 ATTTCAATTT
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
17 2 0.06
18 2 0.06
19 10 0.29
20 18 0.53
21 2 0.06
ACGTcount: A:0.45, C:0.00, G:0.06, T:0.48
Consensus pattern (20 bp):
TAAAATATATTATTGATTAT
Found at i:9659081 original size:14 final size:14
Alignment explanation
Indices: 9659062--9659095 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
9659052 TTCTAAAACT
9659062 ACTTTATTAAAGTA
1 ACTTTATTAAAGTA
*
9659076 ATTTTATTAAAGTA
1 ACTTTATTAAAGTA
9659090 ACTTTA
1 ACTTTA
9659096 AATCAAATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.41, C:0.06, G:0.06, T:0.47
Consensus pattern (14 bp):
ACTTTATTAAAGTA
Found at i:9662493 original size:29 final size:29
Alignment explanation
Indices: 9662427--9662507 Score: 69
Period size: 29 Copynumber: 2.8 Consensus size: 29
9662417 AAAGGTACAT
* *
9662427 ATTTATTTGGATGTAAATTATAATTTAAA
1 ATTTATTTGGATGTAAATAATAATATAAA
*
9662456 AGTTGATTT-GAGTGTAAA-AATAATATAAGA
1 A-TTTATTTGGA-TGTAAATAATAATATAA-A
* *
9662486 ATTTATTTAGAT-AAAATAATAA
1 ATTTATTTGGATGTAAATAATAA
9662508 ATTTTAAAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 10
0.74 0.09 0.18
Matches are distributed among these distances:
28 3 0.07
29 23 0.55
30 16 0.38
ACGTcount: A:0.47, C:0.00, G:0.12, T:0.41
Consensus pattern (29 bp):
ATTTATTTGGATGTAAATAATAATATAAA
Found at i:9662812 original size:30 final size:29
Alignment explanation
Indices: 9662772--9662896 Score: 164
Period size: 30 Copynumber: 4.2 Consensus size: 29
9662762 ATTTATATTA
* *
9662772 AAAAACTTATTTAAGTATAAATTAAAGATT
1 AAAAATTTATTTAAATATAAATTAAA-ATT
9662802 AAAAATTTATTTAAATATAAATTAAAAGTT
1 AAAAATTTATTTAAATATAAATTAAAA-TT
*
9662832 AAAAATTTA-TTAAA-ATACATTAAAATGT
1 AAAAATTTATTTAAATATAAATTAAAAT-T
*
9662860 AAAAATTTATTTAAATATAAAATTAAAAAT
1 AAAAATTTATTTAAATAT-AAATTAAAATT
9662890 AAAAATT
1 AAAAATT
9662897 AAAAATTTAT
Statistics
Matches: 85, Mismatches: 5, Indels: 10
0.85 0.05 0.10
Matches are distributed among these distances:
27 1 0.01
28 20 0.24
29 11 0.13
30 45 0.53
31 8 0.09
ACGTcount: A:0.58, C:0.02, G:0.03, T:0.37
Consensus pattern (29 bp):
AAAAATTTATTTAAATATAAATTAAAATT
Found at i:9662896 original size:13 final size:14
Alignment explanation
Indices: 9662872--9662902 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
9662862 AAATTTATTT
9662872 AAATATAAAATTAA
1 AAATATAAAATTAA
9662886 AAATA-AAAATTAA
1 AAATATAAAATTAA
9662899 AAAT
1 AAAT
9662903 TTATTATTCT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.71
14 5 0.29
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (14 bp):
AAATATAAAATTAA
Found at i:9664474 original size:13 final size:13
Alignment explanation
Indices: 9664458--9664482 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9664448 AGAAAGTAAA
9664458 TAGCAAAAGCAAG
1 TAGCAAAAGCAAG
9664471 TAGCAAAAGCAA
1 TAGCAAAAGCAA
9664483 CAAACCAAAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.16, G:0.20, T:0.08
Consensus pattern (13 bp):
TAGCAAAAGCAAG
Found at i:9668450 original size:9 final size:8
Alignment explanation
Indices: 9668415--9668448 Score: 50
Period size: 8 Copynumber: 4.0 Consensus size: 8
9668405 CAATAAATAC
9668415 ATTTATTA
1 ATTTATTA
9668423 ATTTATTA
1 ATTTATTA
9668431 ATTTAATTA
1 ATTT-ATTA
9668440 TATTTATTA
1 -ATTTATTA
9668449 TAAAGTAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
8 12 0.50
9 8 0.33
10 4 0.17
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
ATTTATTA
Found at i:9669256 original size:15 final size:15
Alignment explanation
Indices: 9669236--9669264 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
9669226 CTCCTTCTTG
9669236 AAAAAAAAAAAGAAA
1 AAAAAAAAAAAGAAA
9669251 AAAAAAAAAAAGAA
1 AAAAAAAAAAAGAA
9669265 CAACAACAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.93, C:0.00, G:0.07, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAAAGAAA
Found at i:9671125 original size:3 final size:3
Alignment explanation
Indices: 9671117--9671162 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
9671107 TATTCCTGTT
9671117 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
9671163 GCCGGTCCTT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:9672172 original size:11 final size:10
Alignment explanation
Indices: 9672146--9672171 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
9672136 TGAACTAATT
9672146 AAAAAATTAA
1 AAAAAATTAA
9672156 AAAAAATTAA
1 AAAAAATTAA
9672166 AAAAAA
1 AAAAAA
9672172 AAATCAAAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (10 bp):
AAAAAATTAA
Found at i:9672214 original size:10 final size:11
Alignment explanation
Indices: 9672199--9672227 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
9672189 GCATACATTC
9672199 TTTTATTTTA-
1 TTTTATTTTAT
9672209 TTTTATTTTAT
1 TTTTATTTTAT
9672220 TTTTATTT
1 TTTTATTT
9672228 ATATCATATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (11 bp):
TTTTATTTTAT
Found at i:9673221 original size:16 final size:16
Alignment explanation
Indices: 9673190--9673234 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
9673180 CTATCAATAC
* *
9673190 ATACATACATACATAT
1 ATACATAAATATATAT
9673206 ATACATAAATATATAT
1 ATACATAAATATATAT
* *
9673222 GTAAATAAATATA
1 ATACATAAATATA
9673235 CTCATAAAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.56, C:0.09, G:0.02, T:0.33
Consensus pattern (16 bp):
ATACATAAATATATAT
Found at i:9673673 original size:21 final size:22
Alignment explanation
Indices: 9673645--9673696 Score: 81
Period size: 22 Copynumber: 2.5 Consensus size: 22
9673635 GATATTTTTA
*
9673645 AATA-TTTATA-TTTAAAAATT
1 AATATTTTATATTTTAAAAAAT
9673665 AATATTTTATATTTTAAAAAAT
1 AATATTTTATATTTTAAAAAAT
9673687 AATATTTTAT
1 AATATTTTAT
9673697 TAATTTCGAG
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 4 0.14
21 6 0.21
22 19 0.66
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (22 bp):
AATATTTTATATTTTAAAAAAT
Found at i:9676564 original size:3 final size:3
Alignment explanation
Indices: 9676556--9676596 Score: 64
Period size: 3 Copynumber: 13.7 Consensus size: 3
9676546 AACTTGTTGG
* *
9676556 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGC TGA TGC TGA TG
1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TG
9676597 CCGATATCAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.27, C:0.05, G:0.34, T:0.34
Consensus pattern (3 bp):
TGA
Found at i:9689103 original size:39 final size:39
Alignment explanation
Indices: 9689049--9689127 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
9689039 AAAAAAAACC
9689049 TGGATGACACTAATCCAAACATACTTGACCATGAGAATG
1 TGGATGACACTAATCCAAACATACTTGACCATGAGAATG
9689088 TGGATGACACTAATCCAAACATACTTGACCATGAGAATG
1 TGGATGACACTAATCCAAACATACTTGACCATGAGAATG
9689127 T
1 T
9689128 TACCTGATGA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.38, C:0.20, G:0.18, T:0.24
Consensus pattern (39 bp):
TGGATGACACTAATCCAAACATACTTGACCATGAGAATG
Found at i:9690816 original size:11 final size:11
Alignment explanation
Indices: 9690800--9690835 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
9690790 ACCTGACCTT
*
9690800 AAAGTTTATAA
1 AAAGTTTACAA
*
9690811 AAAGTTCACAA
1 AAAGTTTACAA
9690822 AAAGTTTACAA
1 AAAGTTTACAA
9690833 AAA
1 AAA
9690836 CAAAAACAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.58, C:0.08, G:0.08, T:0.25
Consensus pattern (11 bp):
AAAGTTTACAA
Found at i:9699973 original size:1 final size:1
Alignment explanation
Indices: 9699967--9700014 Score: 51
Period size: 1 Copynumber: 48.0 Consensus size: 1
9699957 TCAAAGAGTG
* ** * *
9699967 TTTTTTTTTTTTTTTTTGTTTCGTTTTGTTTTTTTTCTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
9700015 ATCACGACTA
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
1 38 1.00
ACGTcount: A:0.00, C:0.04, G:0.06, T:0.90
Consensus pattern (1 bp):
T
Found at i:9702312 original size:2 final size:2
Alignment explanation
Indices: 9702300--9702343 Score: 70
Period size: 2 Copynumber: 22.0 Consensus size: 2
9702290 TCGTCAGAAA
* *
9702300 AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9702342 AT
1 AT
9702344 TAAGGGCGGT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (2 bp):
AT
Found at i:9703756 original size:2 final size:2
Alignment explanation
Indices: 9703749--9703775 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
9703739 CTTCATTAAA
9703749 AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG A
9703776 ATTTCTTGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:9710069 original size:11 final size:11
Alignment explanation
Indices: 9710053--9710077 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
9710043 CCTTGCAAGT
9710053 TTTGGGCTCTA
1 TTTGGGCTCTA
9710064 TTTGGGCTCTA
1 TTTGGGCTCTA
9710075 TTT
1 TTT
9710078 ATTCATATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.08, C:0.16, G:0.24, T:0.52
Consensus pattern (11 bp):
TTTGGGCTCTA
Found at i:9711064 original size:63 final size:63
Alignment explanation
Indices: 9710991--9711240 Score: 342
Period size: 63 Copynumber: 4.0 Consensus size: 63
9710981 CTCGACTGGG
* * *
9710991 GGTGGCTTCAC-ATGTGGAGGACTCGGATAGACAGGAGGTTTTGGAGGCAGAGTTGGTGGTGCT
1 GGTGGCTTCACAAT-TGGAGGACTCGGATAGACAGGAGGTGTTGGAGGCAGAATTGGTGGTGTT
* * * *
9711054 GGTGGCTTCACAAGTGGAGGACTCGGATGGACAGGAGGTGTTGGAGGCAGAGTTGGTGGTATT
1 GGTGGCTTCACAATTGGAGGACTCGGATAGACAGGAGGTGTTGGAGGCAGAATTGGTGGTGTT
* * *
9711117 GGTGGCTTTACAATTGGAGGACTCGGATGGACAGGAGGTGTTGGAGGCAGAATTGGCGGTGTT
1 GGTGGCTTCACAATTGGAGGACTCGGATAGACAGGAGGTGTTGGAGGCAGAATTGGTGGTGTT
* * * *
9711180 GGTGGATTCACTATTGGAGGACTAGGATAGACAGGGGGCT-TTGGAGGCAGAATTGGTGGTG
1 GGTGGCTTCACAATTGGAGGACTCGGATAGACAGGAGG-TGTTGGAGGCAGAATTGGTGGTG
9711241 ATATGACTGG
Statistics
Matches: 168, Mismatches: 17, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
63 166 0.99
64 2 0.01
ACGTcount: A:0.21, C:0.11, G:0.43, T:0.25
Consensus pattern (63 bp):
GGTGGCTTCACAATTGGAGGACTCGGATAGACAGGAGGTGTTGGAGGCAGAATTGGTGGTGTT
Found at i:9711424 original size:78 final size:79
Alignment explanation
Indices: 9711285--9711462 Score: 232
Period size: 78 Copynumber: 2.2 Consensus size: 79
9711275 GGGTTTGACG
* * * ** *
9711285 ACAGGAGGTTTGGGTACGTGAGGTGGGGGCTTGGGCACCGGTTCGTATGGAGGCTTCGGTGTACA
1 ACAGGAGGTTTGGGTACATAAGGT--GGCCTTGGGCACCGGCACGTAGGGAGGCTTCGGTGTACA
9711350 ACGTGGAGGCTTTACA
64 ACGTGGAGGCTTTACA
* * * *
9711366 ACAGGAGGTTTGGGTACATAAGGT-GCCTTGGGCACCGGCACGTAGGGAGGTTTTGGTGTATAAG
1 ACAGGAGGTTTGGGTACATAAGGTGGCCTTGGGCACCGGCACGTAGGGAGGCTTCGGTGTACAAC
*
9711430 GTGGAGGCTTTACT
66 GTGGAGGCTTTACA
9711444 ACAGGAGGTTTGGGTACAT
1 ACAGGAGGTTTGGGTACAT
9711463 GGGGAGGCTT
Statistics
Matches: 86, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
78 64 0.74
81 22 0.26
ACGTcount: A:0.20, C:0.15, G:0.40, T:0.26
Consensus pattern (79 bp):
ACAGGAGGTTTGGGTACATAAGGTGGCCTTGGGCACCGGCACGTAGGGAGGCTTCGGTGTACAAC
GTGGAGGCTTTACA
Found at i:9711472 original size:33 final size:33
Alignment explanation
Indices: 9711432--9711502 Score: 97
Period size: 33 Copynumber: 2.2 Consensus size: 33
9711422 TGTATAAGGT
* * * *
9711432 GGAGGCTTTACTACAGGAGGTTTGGGTACATGG
1 GGAGGCTTTACAACAGGAGGCTTGGGGACATAG
*
9711465 GGAGGCTTTACAACAGGTGGCTTGGGGACATAG
1 GGAGGCTTTACAACAGGAGGCTTGGGGACATAG
9711498 GGAGG
1 GGAGG
9711503 TTTTGGTGTA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.23, C:0.13, G:0.42, T:0.23
Consensus pattern (33 bp):
GGAGGCTTTACAACAGGAGGCTTGGGGACATAG
Found at i:9711589 original size:87 final size:87
Alignment explanation
Indices: 9711408--9711574 Score: 262
Period size: 87 Copynumber: 1.9 Consensus size: 87
9711398 CACCGGCACG
* * *
9711408 TAGGGAGGTTTTGGTGTATAAGGTGGAGGCTTTACTACAGGAGGTTTGGGTACATGGGGAGGCTT
1 TAGGGAGGTTTTGGTGTATAAGGTGGAGGCTTCACAACAGGAGGTTTGGGTACATAGGGAGGCTT
*
9711473 TACAACAGGTGGCTTGGGGACA
66 TACAACAGGAGGCTTGGGGACA
* * *
9711495 TAGGGAGGTTTTGGTGTATAATGTGGAGGCTTCACAACCGGAGGTTTGGGTACATATGGAGGCTT
1 TAGGGAGGTTTTGGTGTATAAGGTGGAGGCTTCACAACAGGAGGTTTGGGTACATAGGGAGGCTT
*
9711560 TACTACAGGAGGCTT
66 TACAACAGGAGGCTT
9711575 AGGTGGCTTG
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
87 72 1.00
ACGTcount: A:0.22, C:0.11, G:0.38, T:0.29
Consensus pattern (87 bp):
TAGGGAGGTTTTGGTGTATAAGGTGGAGGCTTCACAACAGGAGGTTTGGGTACATAGGGAGGCTT
TACAACAGGAGGCTTGGGGACA
Found at i:9720098 original size:21 final size:21
Alignment explanation
Indices: 9720074--9720114 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
9720064 TATCTGAATT
9720074 CATACTCTCTATTTAAAAATA
1 CATACTCTCTATTTAAAAATA
* *
9720095 CATATTCTCTCTTTAAAAAT
1 CATACTCTCTATTTAAAAAT
9720115 TTATTCTCTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.39, C:0.20, G:0.00, T:0.41
Consensus pattern (21 bp):
CATACTCTCTATTTAAAAATA
Found at i:9721310 original size:24 final size:22
Alignment explanation
Indices: 9721278--9721326 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 22
9721268 AATAACTTTA
*
9721278 AATGATAAATAAAATATATAAAAT
1 AATGATAAAT--AATAAATAAAAT
*
9721302 AATGCTAAATAATAAATAAAAT
1 AATGATAAATAATAAATAAAAT
9721324 AAT
1 AAT
9721327 AATATTTTTC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 14 0.61
24 9 0.39
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.29
Consensus pattern (22 bp):
AATGATAAATAATAAATAAAAT
Found at i:9743299 original size:20 final size:20
Alignment explanation
Indices: 9743276--9743316 Score: 50
Period size: 19 Copynumber: 2.1 Consensus size: 20
9743266 TTATATTAAA
9743276 ATTTTA-ATATATATATTTTT
1 ATTTTATATATAT-TATTTTT
*
9743296 A-TTTATTTATATTATTTTT
1 ATTTTATATATATTATTTTT
9743315 AT
1 AT
9743317 ATCGTATCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 4
0.78 0.04 0.17
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (20 bp):
ATTTTATATATATTATTTTT
Found at i:9754338 original size:19 final size:18
Alignment explanation
Indices: 9754298--9754343 Score: 58
Period size: 19 Copynumber: 2.6 Consensus size: 18
9754288 ACAAAATTAG
9754298 ATATT-TTTAAATATATA
1 ATATTATTTAAATATATA
* *
9754315 TTATTATTTAAATTTTATA
1 ATATTATTTAAA-TATATA
9754334 ATATTATTTA
1 ATATTATTTA
9754344 CTATAAAAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
17 4 0.17
18 6 0.25
19 14 0.58
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (18 bp):
ATATTATTTAAATATATA
Found at i:9754473 original size:2 final size:2
Alignment explanation
Indices: 9754466--9754493 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
9754456 ATCAACCCTA
9754466 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9754494 CTAATAATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:9757073 original size:17 final size:17
Alignment explanation
Indices: 9757049--9757094 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
9757039 TATAATTTTT
9757049 AATT-AATTCGAATTTA
1 AATTGAATTCGAATTTA
**
9757065 AATTGAATTTAAATTTA
1 AATTGAATTCGAATTTA
9757082 AATTTGAA-TCGAA
1 AA-TTGAATTCGAA
9757095 CAAAATTGAG
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
16 4 0.17
17 15 0.62
18 5 0.21
ACGTcount: A:0.46, C:0.04, G:0.09, T:0.41
Consensus pattern (17 bp):
AATTGAATTCGAATTTA
Found at i:9758329 original size:24 final size:24
Alignment explanation
Indices: 9758302--9758373 Score: 144
Period size: 24 Copynumber: 3.0 Consensus size: 24
9758292 TTAAATACGA
9758302 CTCCGTTTCTTGCTAACACTCTAG
1 CTCCGTTTCTTGCTAACACTCTAG
9758326 CTCCGTTTCTTGCTAACACTCTAG
1 CTCCGTTTCTTGCTAACACTCTAG
9758350 CTCCGTTTCTTGCTAACACTCTAG
1 CTCCGTTTCTTGCTAACACTCTAG
9758374 ATTTATTAGT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 48 1.00
ACGTcount: A:0.17, C:0.33, G:0.12, T:0.38
Consensus pattern (24 bp):
CTCCGTTTCTTGCTAACACTCTAG
Found at i:9758567 original size:15 final size:15
Alignment explanation
Indices: 9758544--9758575 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
9758534 TATCAAATAA
9758544 AATTCATTTATATTT
1 AATTCATTTATATTT
*
9758559 AATTTATTTATATTT
1 AATTCATTTATATTT
9758574 AA
1 AA
9758576 AAATAACAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (15 bp):
AATTCATTTATATTT
Found at i:9765554 original size:20 final size:19
Alignment explanation
Indices: 9765531--9765576 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 19
9765521 TTAATAAAAT
9765531 ATATTTTTTAAAAATATAAA
1 ATATTTTTTAAAAATAT-AA
**
9765551 ATATTATTTTTTAAATATAA
1 ATATT-TTTTAAAAATATAA
9765571 ATATTT
1 ATATTT
9765577 AAAAATATCA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 1 0.04
20 12 0.52
21 10 0.43
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (19 bp):
ATATTTTTTAAAAATATAA
Found at i:9765584 original size:30 final size:30
Alignment explanation
Indices: 9765548--9765608 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
9765538 TTAAAAATAT
* * * *
9765548 AAAATATTATTTTTTAAATATAAATATTTA
1 AAAATATCATTATATAAATATAAATAATTA
9765578 AAAATATCATTATATAAATATAAATAATTA
1 AAAATATCATTATATAAATATAAATAATTA
9765608 A
1 A
9765609 TTAATTAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.43
Consensus pattern (30 bp):
AAAATATCATTATATAAATATAAATAATTA
Found at i:9768177 original size:21 final size:21
Alignment explanation
Indices: 9768136--9768240 Score: 89
Period size: 21 Copynumber: 5.3 Consensus size: 21
9768126 CTCGTCTTTC
*
9768136 TCATCATAATA-TC--CGTCA
1 TCATCATAATATTCTTCATCA
* *
9768154 TCATCGTAGTATTCTTCATCA
1 TCATCATAATATTCTTCATCA
*
9768175 TCATCATAATCA-TCGTCATCA
1 TCATCATAAT-ATTCTTCATCA
*
9768196 T-A--ATAATATTCTTCTTCA
1 TCATCATAATATTCTTCATCA
* *
9768214 TCATAATAATATTCTTCATCT
1 TCATCATAATATTCTTCATCA
9768235 TCATCA
1 TCATCA
9768241 CTCTTGCAAT
Statistics
Matches: 68, Mismatches: 11, Indels: 13
0.74 0.12 0.14
Matches are distributed among these distances:
17 1 0.01
18 22 0.32
19 3 0.04
20 1 0.01
21 40 0.59
22 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.04, T:0.41
Consensus pattern (21 bp):
TCATCATAATATTCTTCATCA
Found at i:9768187 original size:15 final size:15
Alignment explanation
Indices: 9768169--9768199 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
9768159 GTAGTATTCT
9768169 TCATCATCATCATAA
1 TCATCATCATCATAA
*
9768184 TCATCGTCATCATAA
1 TCATCATCATCATAA
9768199 T
1 T
9768200 AATATTCTTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.35, C:0.26, G:0.03, T:0.35
Consensus pattern (15 bp):
TCATCATCATCATAA
Found at i:9768192 original size:39 final size:39
Alignment explanation
Indices: 9768136--9768225 Score: 119
Period size: 39 Copynumber: 2.3 Consensus size: 39
9768126 CTCGTCTTTC
** *
9768136 TCATCATAATATCCGTCATCATCGTAGTATTCTTCATCA
1 TCATCATAATATCCGTCATCATAATAATATTCTTCATCA
*
9768175 TCATCATAATCAT-CGTCATCATAATAATATTCTTCTTCA
1 TCATCATAAT-ATCCGTCATCATAATAATATTCTTCATCA
*
9768214 TCATAATAATAT
1 TCATCATAATAT
9768226 TCTTCATCTT
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
38 2 0.04
39 41 0.91
40 2 0.04
ACGTcount: A:0.33, C:0.22, G:0.04, T:0.40
Consensus pattern (39 bp):
TCATCATAATATCCGTCATCATAATAATATTCTTCATCA
Found at i:9768217 original size:24 final size:24
Alignment explanation
Indices: 9768190--9768240 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
9768180 ATAATCATCG
* *
9768190 TCATCATAATAATATTCTTCTTCA
1 TCATAATAATAATATTCATCTTCA
* *
9768214 TCATAATAATATTCTTCATCTTCA
1 TCATAATAATAATATTCATCTTCA
9768238 TCA
1 TCA
9768241 CTCTTGCAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.33, C:0.22, G:0.00, T:0.45
Consensus pattern (24 bp):
TCATAATAATAATATTCATCTTCA
Found at i:9768228 original size:18 final size:18
Alignment explanation
Indices: 9768172--9768233 Score: 63
Period size: 18 Copynumber: 3.3 Consensus size: 18
9768162 GTATTCTTCA
* *
9768172 TCATCATCATAATCA-TCG
1 TCATCATAATAAT-ATTCT
9768190 TCATCATAATAATATTCTTCT
1 TCATCATAATAATA---TTCT
9768211 TCATCATAATAATATTCT
1 TCATCATAATAATATTCT
9768229 TCATC
1 TCATC
9768234 TTCATCACTC
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
17 1 0.03
18 21 0.55
21 16 0.42
ACGTcount: A:0.34, C:0.23, G:0.02, T:0.42
Consensus pattern (18 bp):
TCATCATAATAATATTCT
Found at i:9773768 original size:12 final size:12
Alignment explanation
Indices: 9773751--9773776 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
9773741 TATTTAACAT
9773751 ATAAATAATTTA
1 ATAAATAATTTA
9773763 ATAAATAATTTA
1 ATAAATAATTTA
9773775 AT
1 AT
9773777 TATTTATTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (12 bp):
ATAAATAATTTA
Found at i:9775103 original size:30 final size:29
Alignment explanation
Indices: 9775045--9775105 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 29
9775035 ATAACTTTAC
*
9775045 TATATTTTAAAATTAAATTCAAACAAAAA
1 TATATTTTAAAATTAAATTCAAAAAAAAA
* *
9775074 TATATTTTATTAATTAAATTAATAAAAAAAA
1 TATATTTTA-AAATTAAATTCA-AAAAAAAA
9775105 T
1 T
9775106 TTTAATACTA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
29 9 0.33
30 10 0.37
31 8 0.30
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.39
Consensus pattern (29 bp):
TATATTTTAAAATTAAATTCAAAAAAAAA
Found at i:9775465 original size:10 final size:10
Alignment explanation
Indices: 9775439--9775481 Score: 59
Period size: 10 Copynumber: 4.2 Consensus size: 10
9775429 TGTAAAATAT
9775439 AAAATTTTAA
1 AAAATTTTAA
9775449 CAAAATTTTAA
1 -AAAATTTTAA
*
9775460 AAAATTTTAC
1 AAAATTTTAA
*
9775470 ATAATTTTAA
1 AAAATTTTAA
9775480 AA
1 AA
9775482 TTTAAATAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
10 18 0.64
11 10 0.36
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.40
Consensus pattern (10 bp):
AAAATTTTAA
Found at i:9775475 original size:20 final size:21
Alignment explanation
Indices: 9775439--9775481 Score: 70
Period size: 20 Copynumber: 2.1 Consensus size: 21
9775429 TGTAAAATAT
9775439 AAAATTTTAACAAAATTTTAA
1 AAAATTTTAACAAAATTTTAA
*
9775460 AAAATTTT-ACATAATTTTAA
1 AAAATTTTAACAAAATTTTAA
9775480 AA
1 AA
9775482 TTTAAATAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
20 13 0.62
21 8 0.38
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.40
Consensus pattern (21 bp):
AAAATTTTAACAAAATTTTAA
Found at i:9777971 original size:19 final size:19
Alignment explanation
Indices: 9777947--9777984 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
9777937 TGGGATAAAA
9777947 ATTTATTATATTATGTTAT
1 ATTTATTATATTATGTTAT
* *
9777966 ATTTATTTTATTATTTTAT
1 ATTTATTATATTATGTTAT
9777985 GTGTATTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (19 bp):
ATTTATTATATTATGTTAT
Found at i:9777991 original size:19 final size:19
Alignment explanation
Indices: 9777950--9777993 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
9777940 GATAAAAATT
* *
9777950 TATTATATTATGTTATATT
1 TATTTTATTATGTTATATG
* *
9777969 TATTTTATTATTTTATGTG
1 TATTTTATTATGTTATATG
9777988 TATTTT
1 TATTTT
9777994 TTTAATATTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.25, C:0.00, G:0.07, T:0.68
Consensus pattern (19 bp):
TATTTTATTATGTTATATG
Found at i:9787643 original size:25 final size:25
Alignment explanation
Indices: 9787613--9787670 Score: 107
Period size: 25 Copynumber: 2.3 Consensus size: 25
9787603 TATAATATCA
9787613 CATCTAGGGTAATATAAATTGTCAG
1 CATCTAGGGTAATATAAATTGTCAG
9787638 CATCTAGGGTAATATAAATTGTCAG
1 CATCTAGGGTAATATAAATTGTCAG
*
9787663 CATATAGG
1 CATCTAGG
9787671 TCATTTATAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.36, C:0.12, G:0.21, T:0.31
Consensus pattern (25 bp):
CATCTAGGGTAATATAAATTGTCAG
Found at i:9789550 original size:27 final size:26
Alignment explanation
Indices: 9789520--9789600 Score: 71
Period size: 27 Copynumber: 3.2 Consensus size: 26
9789510 TACCAATCTC
*
9789520 TCTTTTTTGAGATATTTTAAAATTAT
1 TCTTTTTTGAAATATTTTAAAATTAT
* *
9789546 GTCTTTTTTTAAACA-TTTAAAATT-T
1 -TCTTTTTTGAAATATTTTAAAATTAT
* **
9789571 T-TATTTTGTTATATTTTAAAATTAT
1 TCTTTTTTGAAATATTTTAAAATTAT
9789596 T-TTTT
1 TCTTTT
9789601 AAATATTTTT
Statistics
Matches: 43, Mismatches: 9, Indels: 6
0.74 0.16 0.10
Matches are distributed among these distances:
23 7 0.16
24 10 0.23
25 6 0.14
26 9 0.21
27 11 0.26
ACGTcount: A:0.30, C:0.04, G:0.05, T:0.62
Consensus pattern (26 bp):
TCTTTTTTGAAATATTTTAAAATTAT
Found at i:9789684 original size:16 final size:16
Alignment explanation
Indices: 9789663--9789703 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
9789653 AGGATTTAAA
9789663 ATTAAATATTAA-ATTT
1 ATTAAAT-TTAATATTT
9789679 ATTAAATTTAATATTT
1 ATTAAATTTAATATTT
*
9789695 TTTAAATTT
1 ATTAAATTT
9789704 TTTAAAAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 4 0.17
16 19 0.83
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (16 bp):
ATTAAATTTAATATTT
Found at i:9791920 original size:14 final size:14
Alignment explanation
Indices: 9791901--9791929 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
9791891 TAACAGTTGA
9791901 TCTGTCTGAGGATG
1 TCTGTCTGAGGATG
9791915 TCTGTCTGAGGATG
1 TCTGTCTGAGGATG
9791929 T
1 T
9791930 TTACAAGTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.14, G:0.34, T:0.38
Consensus pattern (14 bp):
TCTGTCTGAGGATG
Found at i:9793151 original size:57 final size:56
Alignment explanation
Indices: 9793063--9793179 Score: 198
Period size: 57 Copynumber: 2.1 Consensus size: 56
9793053 TAGAAGCTGG
* *
9793063 AAATAGTAAAAATATTTCAAAATTTTTCTTCAGTGCTGTCTGTGTCATTTTGTATGA
1 AAATAGTAAAAATATTTCAAAATTTTTCTTCAGTGCTGTCAGTGTCA-TTTGTACGA
*
9793120 AAATAGTAAAAATATTTCAAAGTTTTTCTTCAGTGCTGTCAGTGTCATTTGTACGA
1 AAATAGTAAAAATATTTCAAAATTTTTCTTCAGTGCTGTCAGTGTCATTTGTACGA
9793176 AAAT
1 AAAT
9793180 CTTCTGGTGC
Statistics
Matches: 57, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
56 12 0.21
57 45 0.79
ACGTcount: A:0.33, C:0.11, G:0.15, T:0.41
Consensus pattern (56 bp):
AAATAGTAAAAATATTTCAAAATTTTTCTTCAGTGCTGTCAGTGTCATTTGTACGA
Found at i:9793215 original size:68 final size:68
Alignment explanation
Indices: 9793131--9793334 Score: 381
Period size: 68 Copynumber: 3.0 Consensus size: 68
9793121 AATAGTAAAA
* *
9793131 ATATTTCAAAGTTTTTCTTCAGTGCTGTCAGTGTCATTTGTACGAAAATCTTCTGGTGCAGTCAC
1 ATATTTCAAAGTTTTTCTTCAGTGCTGTTAGTGTCATTTGTACGACAATCTTCTGGTGCAGTCAC
9793196 ATG
66 ATG
*
9793199 ATATTTCAAAGTTTTTCTTCAGTGCTGTTAGTGTCATTTGTACGGCAATCTTCTGGTGCAGTCAC
1 ATATTTCAAAGTTTTTCTTCAGTGCTGTTAGTGTCATTTGTACGACAATCTTCTGGTGCAGTCAC
9793264 ATG
66 ATG
9793267 ATATTTCAAAGTTTTTCTTCAGTGCTGTTAGTGTCATTTGTACGACAATCTTCTGGTGCAGTCAC
1 ATATTTCAAAGTTTTTCTTCAGTGCTGTTAGTGTCATTTGTACGACAATCTTCTGGTGCAGTCAC
9793332 ATG
66 ATG
9793335 TAAATGGTAC
Statistics
Matches: 132, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
68 132 1.00
ACGTcount: A:0.22, C:0.18, G:0.20, T:0.41
Consensus pattern (68 bp):
ATATTTCAAAGTTTTTCTTCAGTGCTGTTAGTGTCATTTGTACGACAATCTTCTGGTGCAGTCAC
ATG
Found at i:9802230 original size:21 final size:21
Alignment explanation
Indices: 9802206--9802251 Score: 51
Period size: 19 Copynumber: 2.2 Consensus size: 21
9802196 AGATTATCTT
9802206 AAATTGAACTATAATAT-ATAA
1 AAATT-AACTATAATATAATAA
**
9802227 AAA-TATTTATAATATAATAA
1 AAATTAACTATAATATAATAA
9802247 AAATT
1 AAATT
9802252 CAATAATTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
19 9 0.43
20 8 0.38
21 4 0.19
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (21 bp):
AAATTAACTATAATATAATAA
Found at i:9802257 original size:19 final size:19
Alignment explanation
Indices: 9802216--9802258 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
9802206 AAATTGAACT
**
9802216 ATAATATATAAAAATATTT
1 ATAATATATAAAAATATCA
9802235 ATAATATAATAAAAAT-TCA
1 ATAATAT-ATAAAAATATCA
9802254 ATAAT
1 ATAAT
9802259 TTAAATATTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 13 0.62
20 8 0.38
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.37
Consensus pattern (19 bp):
ATAATATATAAAAATATCA
Found at i:9807045 original size:3 final size:3
Alignment explanation
Indices: 9807037--9807062 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
9807027 TTAATATTGA
9807037 ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT AT
9807063 ACACTTGGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:9812793 original size:20 final size:19
Alignment explanation
Indices: 9812757--9812807 Score: 57
Period size: 21 Copynumber: 2.5 Consensus size: 19
9812747 TTTTTATTAA
9812757 AAATATTAAAATAAAATAT
1 AAATATTAAAATAAAATAT
*
9812776 AAATATTTAATAATAAATAAAT
1 AAATA-TTAA-AATAAA-ATAT
*
9812798 AAAAATTAAA
1 AAATATTAAA
9812808 TAATCAAACG
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
19 5 0.19
20 5 0.19
21 10 0.37
22 7 0.26
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (19 bp):
AAATATTAAAATAAAATAT
Found at i:9814263 original size:21 final size:21
Alignment explanation
Indices: 9814224--9814272 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
9814214 TAATTAATTT
*
9814224 TATTTT-TATATTCAAAATAA
1 TATTTTATATATTAAAAATAA
*
9814244 TATTTTATATTTTAAAAATAA
1 TATTTTATATATTAAAAATAA
9814265 TATTTTAT
1 TATTTTAT
9814273 TAATTTCGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 6 0.23
21 20 0.77
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (21 bp):
TATTTTATATATTAAAAATAA
Found at i:9815099 original size:14 final size:15
Alignment explanation
Indices: 9815082--9815113 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
9815072 GTGAAAAAAA
9815082 TTTAAAATTT-TAAT
1 TTTAAAATTTGTAAT
9815096 TTTAAAATTTGTAAT
1 TTTAAAATTTGTAAT
9815111 TTT
1 TTT
9815114 TTATTTGTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.59
15 7 0.41
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (15 bp):
TTTAAAATTTGTAAT
Found at i:9815925 original size:2 final size:2
Alignment explanation
Indices: 9815914--9815942 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
9815904 AGATAATAAA
9815914 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9815943 CATAAGGTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:9816187 original size:20 final size:20
Alignment explanation
Indices: 9816139--9816187 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
9816129 ATATATATAA
*
9816139 ATAATATTTTAATTATTTAT
1 ATAATTTTTTAATTATTTAT
* *
9816159 TTAATTTTTTAATTATTTGT
1 ATAATTTTTTAATTATTTAT
9816179 ATATATTTT
1 ATA-ATTTT
9816188 ATATATATTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 19 0.79
21 5 0.21
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (20 bp):
ATAATTTTTTAATTATTTAT
Found at i:9818003 original size:15 final size:14
Alignment explanation
Indices: 9817980--9818015 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
9817970 GAATACTCTT
9817980 AAAAATTAAAAAAC
1 AAAAATTAAAAAAC
*
9817994 AAAAAGTTAAAAAAG
1 AAAAA-TTAAAAAAC
9818009 AAAAATT
1 AAAAATT
9818016 TTAAGACATC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.75, C:0.03, G:0.06, T:0.17
Consensus pattern (14 bp):
AAAAATTAAAAAAC
Found at i:9818353 original size:10 final size:10
Alignment explanation
Indices: 9818340--9818369 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
9818330 ATCGAATATT
9818340 TATATTTTAA
1 TATATTTTAA
9818350 TATATTTTAA
1 TATATTTTAA
9818360 T-TATTTTAA
1 TATATTTTAA
9818369 T
1 T
9818370 TGATAAAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 9 0.45
10 11 0.55
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (10 bp):
TATATTTTAA
Found at i:9824349 original size:441 final size:441
Alignment explanation
Indices: 9823527--9826617 Score: 5274
Period size: 441 Copynumber: 7.0 Consensus size: 441
9823517 AAGAGAAATG
* * *
9823527 GAAGATCAGATGGCCTCCCTGAAGGAAGAAGTCAAGGGCCTGCATGAGAACGTTGCTGAAAATCA
1 GAAGATCAGATGGCCTCCCTGAAGGAAGAAGTGAAGGGCCTGTATGAGAAGGTTGCTGAAAATCA
* *
9823592 GAAGGTCAATGAAGCACTTCAAAGCACAATAACTGAACTTTCTGCTGCTCGGGAGGAGTTGGCAC
66 GAAGGTCAATGAAGCACTTCAAAGCACAATAGCTGAACTTTCTGCTGCTCAGGAGGAGTTGGCAC
** * * * *
9823657 TTTCTAAATCACTAGTGTTGGATTTGGAGCTAAGACTTAGTTCAAAAGAAGCTCTTATTAATGGA
131 TTTCTAAATCACTAGTACTGAATTTGGAGCAAAGACTTAATTCAAAAGAAGCTCTTATTAATGAA
* ** *
9823722 CTGACTGAAAAGTTGGACCTGAAAGGGGCTTCAGAATCCAAGGTGAAGGAAGATTTCTCAACTCT
196 CTGACTGAAGAGTTGGACCTGAAAAAGGCTTCAGAATCCAAGGTGAAGGAAGATATCTCAACTCT
*
9823787 TGAGAATATTTTCACTGCAACTAAAGAAGATCTTCAAGCAAAGGTTTCTGAGTTGGAAGATATGA
261 TGAGAATATTTTTACTGCAACTAAAGAAGATCTTCAAGCAAAGGTTTCTGAGTTGGAAGATATGA
9823852 AGCTGAAACTGGACGAGGAAGTGAAAGCAAGGGAATTGGTTGAAGCTGGGCTGAAGGCCCAACAA
326 AGCTGAAACTGGACGAGGAAGTGAAAGCAAGGGAATTGGTTGAAGCTGGGCTGAAGGCCCAACAA
** * *
9823917 GAACAACTCTCGATTGTACAGGAAGAATTAAGTAAAGTACTAAAAGATAAA
391 GAACAGGTCTCGATTGTACAGGAAGAATCAAGTAAAGTACTAAAAGAAAAA
* * *
9823968 GAAGATCAGATGGCCTCCCTGAAAGAAGAACTCAAGGGCCTGTATGAGAAGGTTGCTGAAAATCA
1 GAAGATCAGATGGCCTCCCTGAAGGAAGAAGTGAAGGGCCTGTATGAGAAGGTTGCTGAAAATCA
* * * * *
9824033 GAAGCTCGATGAAGCACTTCGAAGCACAGTAGCTGAACTTTCTGCTGCTCAAGAGGAGTTGGCAC
66 GAAGGTCAATGAAGCACTTCAAAGCACAATAGCTGAACTTTCTGCTGCTCAGGAGGAGTTGGCAC
* ** * * *
9824098 TTTCTAAGTCACTAGTGTTGGATTCGGAGCAAAGGCTTAATTCAAAAGAAGCTCTTATTAATGAA
131 TTTCTAAATCACTAGTACTGAATTTGGAGCAAAGACTTAATTCAAAAGAAGCTCTTATTAATGAA
* *
9824163 CTGACTGAAGAGTTGAACCTGCAAAAGGCTTCAGAATCCAAGGTGAAGGAAGATATCTCAACTCT
196 CTGACTGAAGAGTTGGACCTGAAAAAGGCTTCAGAATCCAAGGTGAAGGAAGATATCTCAACTCT
9824228 TGAGAATATTTTTACTGCAACTAAAGAAGATCTTCAAGCAAAGGTTTCTGAGTTGGAAGATATGA
261 TGAGAATATTTTTACTGCAACTAAAGAAGATCTTCAAGCAAAGGTTTCTGAGTTGGAAGATATGA
*
9824293 AGCTGAAACTGGACGAGCAAGTGAAAGCAAGGGAATTGGTTGAAGCTGGGCTGAAGGCCCAACAA
326 AGCTGAAACTGGACGAGGAAGTGAAAGCAAGGGAATTGGTTGAAGCTGGGCTGAAGGCCCAACAA
* *
9824358 GAACAGGTCTCGATTGTACAGGAAGAATTAAGTAAAGTACTAAAGGAAAAA
391 GAACAGGTCTCGATTGTACAGGAAGAATCAAGTAAAGTACTAAAAGAAAAA
*
9824409 GAAGATCAGATGGCCTCCCTGAAGGAAGAAGTGAAGGGCCTGAATGAGAAGGTTGCTGAAAATCA
1 GAAGATCAGATGGCCTCCCTGAAGGAAGAAGTGAAGGGCCTGTATGAGAAGGTTGCTGAAAATCA
* * *
9824474 GAAGGTCGATGAAGTACTTCAAAGCACAATAGCTGAACTTTCTGCTGCTCGGGAGGAGTTGGCAC
66 GAAGGTCAATGAAGCACTTCAAAGCACAATAGCTGAACTTTCTGCTGCTCAGGAGGAGTTGGCAC
* * * *
9824539 TTTCTAAATCACTAGTATTGGATTGGGAGCAAAGGCTTAATTCAAAAGAAGCTCTTATTAATGAA
131 TTTCTAAATCACTAGTACTGAATTTGGAGCAAAGACTTAATTCAAAAGAAGCTCTTATTAATGAA
9824604 CTGACTGAAGAGTTGGACCT-AAAAAGGGCTTCAGAATCCAAGGTGAAGGAAGATATCTCAACTC
196 CTGACTGAAGAGTTGGACCTGAAAAA-GGCTTCAGAATCCAAGGTGAAGGAAGATATCTCAACTC
*
9824668 TCGAGAATATTTTTACTGCAACTAAAGAAGATCTTCAAGCAAAGGTTTCTGAGTTGGAAGATATG
260 TTGAGAATATTTTTACTGCAACTAAAGAAGATCTTCAAGCAAAGGTTTCTGAGTTGGAAGATATG
9824733 AAGCTGAAACTGGACGAGGAAGTGAAAGCAAGGGAATTGGTTGAAGCTGGGCTGAAGGCCCAACA
325 AAGCTGAAACTGGACGAGGAAGTGAAAGCAAGGGAATTGGTTGAAGCTGGGCTGAAGGCCCAACA
*
9824798 AGAACAGGTCTCGATTGTACAGGAAGAATCAAGTAAAGTACTAAAGGAAAAA
390 AGAACAGGTCTCGATTGTACAGGAAGAATCAAGTAAAGTACTAAAAGAAAAA
* *
9824850 GAAGATCAGATGGCCTCCCTGAAGGAAGAAGTGAAGGGCCTGAATGAGAAGGTTGCTGAAAGTCA
1 GAAGATCAGATGGCCTCCCTGAAGGAAGAAGTGAAGGGCCTGTATGAGAAGGTTGCTGAAAATCA
* *
9824915 GAAGGTCGATGAAGCACTTCAAAGCACAATAGCTGAACTTTCTGCTGCTCGGGAGGAGTTGGCAC
66 GAAGGTCAATGAAGCACTTCAAAGCACAATAGCTGAACTTTCTGCTGCTCAGGAGGAGTTGGCAC
* * *
9824980 TTTCTAAATCACTAGTACTGAATTTGGAGAAAAGACTAAATTCAAAAGGAGCTCTTATTAATGAA
131 TTTCTAAATCACTAGTACTGAATTTGGAGCAAAGACTTAATTCAAAAGAAGCTCTTATTAATGAA
9825045 CTGACTGAAGAGTTGGACCTGAAAAAGGCTTCAGAATCCAAGGTGAAGGAAGATATCTCAACTCT
196 CTGACTGAAGAGTTGGACCTGAAAAAGGCTTCAGAATCCAAGGTGAAGGAAGATATCTCAACTCT
* *
9825110 TGAGAATATTTTTACTGCAACTAAAGAAGATCTTCAAGCAAAGGTTTCTGAGTTGGAAGTTATCA
261 TGAGAATATTTTTACTGCAACTAAAGAAGATCTTCAAGCAAAGGTTTCTGAGTTGGAAGATATGA
*
9825175 AGCAT-AAACTAGACGAGGAAGTGAAAGCAAGGGAATTGGTTGAAGCTGGGCTGAAGGCCCAACA
326 AGC-TGAAACTGGACGAGGAAGTGAAAGCAAGGGAATTGGTTGAAGCTGGGCTGAAGGCCCAACA
*
9825239 AGAACAGGTCTCGATTGTACGGGAAGAATCAAGTAAAGTACTAAAAGAAAAA
390 AGAACAGGTCTCGATTGTACAGGAAGAATCAAGTAAAGTACTAAAAGAAAAA
*
9825291 GAAGATCGGATGGCCTCCCTGAAGGAAGAAGTGAAGGGCCTGTATGAGAAGGTTGCTGAAAATCA
1 GAAGATCAGATGGCCTCCCTGAAGGAAGAAGTGAAGGGCCTGTATGAGAAGGTTGCTGAAAATCA
* *
9825356 GAAGGTCAATGAAGCACTTCAAAGCAGAATAGCTGAACTTTCTGCAGCTCAGGAGGAGTTGGCAC
66 GAAGGTCAATGAAGCACTTCAAAGCACAATAGCTGAACTTTCTGCTGCTCAGGAGGAGTTGGCAC
* * *
9825421 TTTCTAAATCACTAGTACTGAATTTGGAGGAAAGACTTAATTCAAAGGAAGCTCTTGTTAATGAA
131 TTTCTAAATCACTAGTACTGAATTTGGAGCAAAGACTTAATTCAAAAGAAGCTCTTATTAATGAA
9825486 CTGACTGAAGAGTTGGACCTGAAAAAGGCTTCAGAATCCAAGGTGAAGGAAGATATCTCAACTCT
196 CTGACTGAAGAGTTGGACCTGAAAAAGGCTTCAGAATCCAAGGTGAAGGAAGATATCTCAACTCT
* *
9825551 TGAGAATATTTTTACTGCAACTAAAGAAGATCTTCAAGCAAAGGTTTCTGAGTTGGAAGTTATCA
261 TGAGAATATTTTTACTGCAACTAAAGAAGATCTTCAAGCAAAGGTTTCTGAGTTGGAAGATATGA
* *
9825616 AGCAT-AAACTAGACGAGGAAGCGAAAGCAAGGGAATTGGTTGAAGCTGGGCTGAAGGCCCAACA
326 AGC-TGAAACTGGACGAGGAAGTGAAAGCAAGGGAATTGGTTGAAGCTGGGCTGAAGGCCCAACA
*
9825680 AGAACAGGTCTCGATTGTACGGGAAGAATCAAGTAAAGTACTAAAAGAAAAA
390 AGAACAGGTCTCGATTGTACAGGAAGAATCAAGTAAAGTACTAAAAGAAAAA
9825732 GAAGATC-GAATGGCCTCCCTGAAGGAAGAAGTGAAGGGCCTGTATGAGAAGGTTGCTGAAAATC
1 GAAGATCAG-ATGGCCTCCCTGAAGGAAGAAGTGAAGGGCCTGTATGAGAAGGTTGCTGAAAATC
* * *
9825796 AGAAGGTCAATGAAGCACTTCAAAGCAGAATAGCTGAACTTTCTGCAGCTCAGGAGGAGTTAGCA
65 AGAAGGTCAATGAAGCACTTCAAAGCACAATAGCTGAACTTTCTGCTGCTCAGGAGGAGTTGGCA
* * *
9825861 CTTTCTAAATCACTAGTACTGAATTTGGAGGAAAGACTTAATTCAAAGGAAGCTCTTGTTAATGA
130 CTTTCTAAATCACTAGTACTGAATTTGGAGCAAAGACTTAATTCAAAAGAAGCTCTTATTAATGA
9825926 ACTGACTGAAGAGTTGGACCTGAAAAAGGCTTCAGAATCCAAGGTGAAGGAAGATATCTCAACTC
195 ACTGACTGAAGAGTTGGACCTGAAAAAGGCTTCAGAATCCAAGGTGAAGGAAGATATCTCAACTC
* *
9825991 TTGAGAATATTTTTACTGCAACTAAAGAAGATCTTCAAGCAAAGGTTTCTGAGTTGGAAGTTATC
260 TTGAGAATATTTTTACTGCAACTAAAGAAGATCTTCAAGCAAAGGTTTCTGAGTTGGAAGATATG
*
9826056 AAGCAT-AAACTAGACGAGGAAGTGAAAGCAAGGGAATTGGTTGAAGCTGGGCTGAAGGCCCAAC
325 AAGC-TGAAACTGGACGAGGAAGTGAAAGCAAGGGAATTGGTTGAAGCTGGGCTGAAGGCCCAAC
*
9826120 AAGAACAGGTCTCGATTGTACGGGAAGAATCAAGTAAAGTACTAAAAGAAAAA
389 AAGAACAGGTCTCGATTGTACAGGAAGAATCAAGTAAAGTACTAAAAGAAAAA
*
9826173 GAAGATCGGATGGCCTCCCTGAAGGAAGAAGTGAAGGGCCTGTATGAGAAGGTTGCTGAAAATCA
1 GAAGATCAGATGGCCTCCCTGAAGGAAGAAGTGAAGGGCCTGTATGAGAAGGTTGCTGAAAATCA
* *
9826238 GAAGGTCAATGAAGCACTTCAAAGCAGAATAGCTGAACTTTCTGCAGCTCAGGAGGAGTTGGCAC
66 GAAGGTCAATGAAGCACTTCAAAGCACAATAGCTGAACTTTCTGCTGCTCAGGAGGAGTTGGCAC
* *
9826303 TTTCTAAATCACTAGTACTGAATTTGGAGCAAAGACTTAATTCAAAGGAAGCTCGTATTAATGAA
131 TTTCTAAATCACTAGTACTGAATTTGGAGCAAAGACTTAATTCAAAAGAAGCTCTTATTAATGAA
9826368 CTGACTGAAGAGTTGGACCTGAAAAAGGCTTCAGAATCCAAGGTGAAGGAAGATATCTCAACTCT
196 CTGACTGAAGAGTTGGACCTGAAAAAGGCTTCAGAATCCAAGGTGAAGGAAGATATCTCAACTCT
*
9826433 TGAGAATATTTTTACTGCAACTAAAGAAGATCTTCAAGCAAAGGTTTCTGAGTTGGTAGATATGA
261 TGAGAATATTTTTACTGCAACTAAAGAAGATCTTCAAGCAAAGGTTTCTGAGTTGGAAGATATGA
*
9826498 AGCTGAAACTGGACGAGGAAGTGAAAGCAAGGGAATTGGTTGAAGCTGGGTTGAAGGCCCAACAA
326 AGCTGAAACTGGACGAGGAAGTGAAAGCAAGGGAATTGGTTGAAGCTGGGCTGAAGGCCCAACAA
* * * *
9826563 GAACAGGTCTCCATCGTACAGGAAGAATTAAGTGAAGTACTAAAAGAAAAA
391 GAACAGGTCTCGATTGTACAGGAAGAATCAAGTAAAGTACTAAAAGAAAAA
9826614 GAAG
1 GAAG
9826618 CTCTAGAAAC
Statistics
Matches: 2553, Mismatches: 91, Indels: 12
0.96 0.03 0.00
Matches are distributed among these distances:
440 6 0.00
441 2540 0.99
442 7 0.00
ACGTcount: A:0.36, C:0.16, G:0.26, T:0.22
Consensus pattern (441 bp):
GAAGATCAGATGGCCTCCCTGAAGGAAGAAGTGAAGGGCCTGTATGAGAAGGTTGCTGAAAATCA
GAAGGTCAATGAAGCACTTCAAAGCACAATAGCTGAACTTTCTGCTGCTCAGGAGGAGTTGGCAC
TTTCTAAATCACTAGTACTGAATTTGGAGCAAAGACTTAATTCAAAAGAAGCTCTTATTAATGAA
CTGACTGAAGAGTTGGACCTGAAAAAGGCTTCAGAATCCAAGGTGAAGGAAGATATCTCAACTCT
TGAGAATATTTTTACTGCAACTAAAGAAGATCTTCAAGCAAAGGTTTCTGAGTTGGAAGATATGA
AGCTGAAACTGGACGAGGAAGTGAAAGCAAGGGAATTGGTTGAAGCTGGGCTGAAGGCCCAACAA
GAACAGGTCTCGATTGTACAGGAAGAATCAAGTAAAGTACTAAAAGAAAAA
Found at i:9831529 original size:22 final size:22
Alignment explanation
Indices: 9831501--9831542 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
9831491 TAATATTTAT
9831501 AAAATTAATAAATTATTTTAAA
1 AAAATTAATAAATTATTTTAAA
*
9831523 AAAATTATTAAATTATTTTA
1 AAAATTAATAAATTATTTTA
9831543 TGTCAAATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (22 bp):
AAAATTAATAAATTATTTTAAA
Found at i:9831620 original size:35 final size:36
Alignment explanation
Indices: 9831576--9831649 Score: 107
Period size: 35 Copynumber: 2.1 Consensus size: 36
9831566 AAACAATAAA
*
9831576 ATTTATTTATT-AGCTTATTGTATAATAA-AAATTTT
1 ATTTATTTATTGA-CTTATTATATAATAATAAATTTT
*
9831611 ATTTATTTATTGATTTATTATATAATAATAAATTTT
1 ATTTATTTATTGACTTATTATATAATAATAAATTTT
9831647 ATT
1 ATT
9831650 CTTATATTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
35 24 0.69
36 11 0.31
ACGTcount: A:0.38, C:0.01, G:0.04, T:0.57
Consensus pattern (36 bp):
ATTTATTTATTGACTTATTATATAATAATAAATTTT
Found at i:9835137 original size:2 final size:2
Alignment explanation
Indices: 9835130--9835160 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
9835120 GAATCAATGG
9835130 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
9835161 CAATCACTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:9835302 original size:14 final size:15
Alignment explanation
Indices: 9835283--9835312 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
9835273 TGTTAATGAA
9835283 TTTTTTTTTAA-ATT
1 TTTTTTTTTAATATT
9835297 TTTTTTTTTAATATT
1 TTTTTTTTTAATATT
9835312 T
1 T
9835313 AGAGATGTCC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (15 bp):
TTTTTTTTTAATATT
Found at i:9835554 original size:17 final size:17
Alignment explanation
Indices: 9835532--9835568 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
9835522 TTAATTTGTA
* *
9835532 TTAAATAAAATTTTATT
1 TTAAATAAAAATTTAAT
9835549 TTAAATAAAAATTTAAT
1 TTAAATAAAAATTTAAT
9835566 TTA
1 TTA
9835569 TGTTATAGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
TTAAATAAAAATTTAAT
Found at i:9835561 original size:18 final size:17
Alignment explanation
Indices: 9835532--9835567 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
9835522 TTAATTTGTA
*
9835532 TTAAATAAAATTTTATT
1 TTAAATAAAATTTAATT
9835549 TTAAATAAAAATTTAATT
1 TTAAAT-AAAATTTAATT
9835567 T
1 T
9835568 ATGTTATAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
TTAAATAAAATTTAATT
Found at i:9839971 original size:21 final size:20
Alignment explanation
Indices: 9839946--9839984 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
9839936 AGATTAAGAT
9839946 AAAATAATTTATTTATTAATC
1 AAAATAATTTATTT-TTAATC
*
9839967 AAAATTATTTATTTTTAA
1 AAAATAATTTATTTTTAA
9839985 AATTTATATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (20 bp):
AAAATAATTTATTTTTAATC
Found at i:9840777 original size:29 final size:29
Alignment explanation
Indices: 9840722--9840777 Score: 69
Period size: 29 Copynumber: 1.9 Consensus size: 29
9840712 TGCAAATAAC
* **
9840722 TAAAATAAAAATTTTCTTTTTTCTTAAAA
1 TAAAAGAAAAATTTTCTACTTTCTTAAAA
9840751 TAAAAGAAAAATTTTCTAACTTT-TTAA
1 TAAAAGAAAAATTTTCT-ACTTTCTTAA
9840778 TAACATTAGC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
29 20 0.87
30 3 0.13
ACGTcount: A:0.46, C:0.07, G:0.02, T:0.45
Consensus pattern (29 bp):
TAAAAGAAAAATTTTCTACTTTCTTAAAA
Found at i:9843124 original size:16 final size:16
Alignment explanation
Indices: 9843103--9843133 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
9843093 TATATTTTAA
9843103 TTTGTTGAATAATTTG
1 TTTGTTGAATAATTTG
*
9843119 TTTGTTGAATGATTT
1 TTTGTTGAATAATTT
9843134 AATAATCATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.19, T:0.58
Consensus pattern (16 bp):
TTTGTTGAATAATTTG
Found at i:9844446 original size:5 final size:5
Alignment explanation
Indices: 9844438--9844488 Score: 57
Period size: 5 Copynumber: 9.8 Consensus size: 5
9844428 TAAAATTATG
* * *
9844438 ATAAA ATAAA ATAAA ATAAA ATAATA TTATAA ATAAA ATTAA ATTAA ATAA
1 ATAAA ATAAA ATAAA ATAAA ATAA-A ATA-AA ATAAA ATAAA ATAAA ATAA
9844489 TATCATTATG
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
5 33 0.82
6 6 0.15
7 1 0.03
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (5 bp):
ATAAA
Found at i:9844473 original size:12 final size:12
Alignment explanation
Indices: 9844425--9844478 Score: 55
Period size: 10 Copynumber: 4.9 Consensus size: 12
9844415 TATAGTTGGC
9844425 AAATAAAATTAT
1 AAATAAAATTAT
*
9844437 -GATAAAA-TA-
1 AAATAAAATTAT
9844446 AAATAAAA-TA-
1 AAATAAAATTAT
*
9844456 AAATAATATTAT
1 AAATAAAATTAT
9844468 AAATAAAATTA
1 AAATAAAATTA
9844479 AATTAAATAA
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
10 17 0.49
11 8 0.23
12 10 0.29
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.30
Consensus pattern (12 bp):
AAATAAAATTAT
Found at i:9844476 original size:27 final size:28
Alignment explanation
Indices: 9844425--9844491 Score: 86
Period size: 27 Copynumber: 2.5 Consensus size: 28
9844415 TATAGTTGGC
9844425 AAATAAAAT--TATGATAAAATAAAATA
1 AAATAAAATAATATGATAAAATAAAATA
* *
9844451 AAATAAAATAATATTAT-AAATAAAATT
1 AAATAAAATAATATGATAAAATAAAATA
*
9844478 AAATTAAATAATAT
1 AAATAAAATAATAT
9844492 CATTATGTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
26 9 0.25
27 22 0.61
28 5 0.14
ACGTcount: A:0.67, C:0.00, G:0.01, T:0.31
Consensus pattern (28 bp):
AAATAAAATAATATGATAAAATAAAATA
Found at i:9846631 original size:7 final size:7
Alignment explanation
Indices: 9846621--9846646 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
9846611 TTAATTTAAG
9846621 AAAATAT
1 AAAATAT
9846628 AAAATAT
1 AAAATAT
9846635 AAAATAT
1 AAAATAT
9846642 AAAAT
1 AAAAT
9846647 TTATTATTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (7 bp):
AAAATAT
Found at i:9846701 original size:24 final size:23
Alignment explanation
Indices: 9846634--9846702 Score: 75
Period size: 24 Copynumber: 2.8 Consensus size: 23
9846624 ATATAAAATA
9846634 TAAAATATAAAATTTATTATTATAT
1 TAAAAT-TAAAATTT-TTATTATAT
* * *
9846659 TAAGAATTAAAAATATTATTATTT
1 TAA-AATTAAAATTTTTATTATAT
9846683 TATAAATTAAAATTTTTATT
1 TA-AAATTAAAATTTTTATT
9846703 CCTTACAAGT
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
24 24 0.65
25 10 0.27
26 3 0.08
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.49
Consensus pattern (23 bp):
TAAAATTAAAATTTTTATTATAT
Found at i:9846835 original size:21 final size:20
Alignment explanation
Indices: 9846809--9846861 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 20
9846799 TATTATTAAT
9846809 TTTAATTTTATAGTTACAATA
1 TTTAATTTTATA-TTACAATA
9846830 TTTAATTTTATTATTACAATA
1 TTTAATTTTA-TATTACAATA
*
9846851 ATTAATTTTAT
1 TTTAATTTTAT
9846862 CTCTATTGTT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
20 1 0.03
21 27 0.90
22 2 0.07
ACGTcount: A:0.38, C:0.04, G:0.02, T:0.57
Consensus pattern (20 bp):
TTTAATTTTATATTACAATA
Found at i:9850079 original size:48 final size:48
Alignment explanation
Indices: 9850019--9850114 Score: 149
Period size: 48 Copynumber: 2.0 Consensus size: 48
9850009 GAGATTCAGG
*
9850019 ACTCTTCCTTAGGTCCGTGACATTCTC-CTGCATCCAACCTCGTGACGC
1 ACTCTTCCTTAGGTCCGTGACATTCTCTC-GCACCCAACCTCGTGACGC
* *
9850067 ACTCTTCTTTAGGTCCGTGACATTCTCTCGTACCCAACCTCGTGACGC
1 ACTCTTCCTTAGGTCCGTGACATTCTCTCGCACCCAACCTCGTGACGC
9850115 CTTCGTCACA
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
48 43 0.98
49 1 0.02
ACGTcount: A:0.17, C:0.36, G:0.17, T:0.30
Consensus pattern (48 bp):
ACTCTTCCTTAGGTCCGTGACATTCTCTCGCACCCAACCTCGTGACGC
Found at i:9851243 original size:87 final size:87
Alignment explanation
Indices: 9851097--9851284 Score: 340
Period size: 87 Copynumber: 2.1 Consensus size: 87
9851087 GGTTCTTGAT
*
9851097 TTGTTAGCATCATGGGCCATTCAAGTTGCCAACCGATGTCGGGTCCCTGCCACCGGTTTCTGGCC
1 TTGTTAGCATCATGGGCCATTCAAGTTGCCAACCGATGTCAGGTCCCTGCCACCGGTTTCTGGCC
*
9851162 AGCTATGGAAGCCATTTACCGG
66 AGCTATGGAAGCCACTTACCGG
9851184 TTGTTAGCATCATGGGCCATTCAAGTTGCCAACCGATGTCAGGTCCCTGCCACCGGTTTCTGGCC
1 TTGTTAGCATCATGGGCCATTCAAGTTGCCAACCGATGTCAGGTCCCTGCCACCGGTTTCTGGCC
9851249 AGCTATGGAAGCCACTTACCGG
66 AGCTATGGAAGCCACTTACCGG
*
9851271 TTGATTACCATCAT
1 TTG-TTAGCATCAT
9851285 ACCGGACATG
Statistics
Matches: 97, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
87 88 0.91
88 9 0.09
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.27
Consensus pattern (87 bp):
TTGTTAGCATCATGGGCCATTCAAGTTGCCAACCGATGTCAGGTCCCTGCCACCGGTTTCTGGCC
AGCTATGGAAGCCACTTACCGG
Found at i:9853478 original size:11 final size:11
Alignment explanation
Indices: 9853462--9853500 Score: 78
Period size: 11 Copynumber: 3.5 Consensus size: 11
9853452 TTGTAAGAAG
9853462 ATGCACCAACA
1 ATGCACCAACA
9853473 ATGCACCAACA
1 ATGCACCAACA
9853484 ATGCACCAACA
1 ATGCACCAACA
9853495 ATGCAC
1 ATGCAC
9853501 AATTTTACCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 28 1.00
ACGTcount: A:0.44, C:0.36, G:0.10, T:0.10
Consensus pattern (11 bp):
ATGCACCAACA
Found at i:9853794 original size:21 final size:20
Alignment explanation
Indices: 9853770--9853812 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
9853760 ATGAGTTCAT
*
9853770 TTTAATTTTATATTAAATTTA
1 TTTAATTATAT-TTAAATTTA
*
9853791 TTTAATTATATTTTAATTTA
1 TTTAATTATATTTAAATTTA
9853811 TT
1 TT
9853813 GATTGCTTAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (20 bp):
TTTAATTATATTTAAATTTA
Found at i:9853873 original size:13 final size:13
Alignment explanation
Indices: 9853855--9853880 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
9853845 TAACACTTGA
9853855 TTATAATTATAAT
1 TTATAATTATAAT
9853868 TTATAATTATAAT
1 TTATAATTATAAT
9853881 CACATAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
TTATAATTATAAT
Found at i:9855851 original size:39 final size:39
Alignment explanation
Indices: 9855807--9855881 Score: 150
Period size: 39 Copynumber: 1.9 Consensus size: 39
9855797 ATCAAAACAC
9855807 TTTCACCTTCTCTTCCTGAGAAACAATAACTACATCCAT
1 TTTCACCTTCTCTTCCTGAGAAACAATAACTACATCCAT
9855846 TTTCACCTTCTCTTCCTGAGAAACAATAACTACATC
1 TTTCACCTTCTCTTCCTGAGAAACAATAACTACATC
9855882 AAAGCAATTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.31, C:0.31, G:0.05, T:0.33
Consensus pattern (39 bp):
TTTCACCTTCTCTTCCTGAGAAACAATAACTACATCCAT
Found at i:9857057 original size:55 final size:55
Alignment explanation
Indices: 9856951--9857057 Score: 144
Period size: 55 Copynumber: 1.9 Consensus size: 55
9856941 TGTGGACTCC
* *
9856951 ATATCAACTAGATTTTTTAGCTCAAAACTAGAAATGAAAAGGGGTCTACTATCAA
1 ATATCAACTAGATTTTTTAGCTCAAAACTAGAAATGAAAAGAGGTCAACTATCAA
* * * *
9857006 ATATCAACTAG-TTTTCTTAGTTCAAAACTGGAGATGAAAATAGGTCAACTAT
1 ATATCAACTAGATTTT-TTAGCTCAAAACTAGAAATGAAAAGAGGTCAACTAT
9857058 TAGATTAAGA
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
54 4 0.09
55 41 0.91
ACGTcount: A:0.40, C:0.14, G:0.15, T:0.31
Consensus pattern (55 bp):
ATATCAACTAGATTTTTTAGCTCAAAACTAGAAATGAAAAGAGGTCAACTATCAA
Found at i:9862731 original size:24 final size:23
Alignment explanation
Indices: 9862704--9862759 Score: 87
Period size: 24 Copynumber: 2.4 Consensus size: 23
9862694 TGATTTATAG
9862704 TAAAAGTTTATTTGAATACAAATT
1 TAAAAGTTTATTTGAATACAAA-T
*
9862728 TAAAGGTTTATTTGAATACAAAT
1 TAAAAGTTTATTTGAATACAAAT
9862751 TAAAA-TTTA
1 TAAAAGTTTA
9862760 AAAATTTATT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
22 4 0.13
23 5 0.17
24 21 0.70
ACGTcount: A:0.46, C:0.04, G:0.09, T:0.41
Consensus pattern (23 bp):
TAAAAGTTTATTTGAATACAAAT
Found at i:9862757 original size:30 final size:30
Alignment explanation
Indices: 9862723--9862799 Score: 102
Period size: 30 Copynumber: 2.6 Consensus size: 30
9862713 ATTTGAATAC
**
9862723 AAATTTAAAGGTTTATTTGAATACAAATTA
1 AAATTTAAAAATTTATTTGAATACAAATTA
**
9862753 AAATTTAAAAATTTATTTGAATGTAAATTA
1 AAATTTAAAAATTTATTTGAATACAAATTA
*
9862783 AAATTCAAAAA-TTATTT
1 AAATTTAAAAATTTATTT
9862800 TGGATGTAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
29 6 0.14
30 36 0.86
ACGTcount: A:0.49, C:0.03, G:0.06, T:0.42
Consensus pattern (30 bp):
AAATTTAAAAATTTATTTGAATACAAATTA
Done.