Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19866354
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 74000 characters in sequence are not A, C, G, or T
File 38 of 100
Found at i:9997473 original size:21 final size:20
Alignment explanation
Indices: 9997449--9997488 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
9997439 TAACCTTTTT
* *
9997449 ATATTTTTTGTTAGAAATTTG
1 ATATATTTTGATA-AAATTTG
9997470 ATATATTTTGATAAAATTT
1 ATATATTTTGATAAAATTT
9997489 TATAAGCATC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.35, C:0.00, G:0.10, T:0.55
Consensus pattern (20 bp):
ATATATTTTGATAAAATTTG
Found at i:9997655 original size:21 final size:20
Alignment explanation
Indices: 9997590--9997682 Score: 78
Period size: 21 Copynumber: 4.4 Consensus size: 20
9997580 TGATAAAACA
*
9997590 TTGATAACTTATTAATGTAATT
1 TTGATAAC--ATTAATATAATT
* * *
9997612 TTGATAATCTTTCATACAATT
1 TTGATAA-CATTAATATAATT
**
9997633 TTGATAACATATAATATGTTT
1 TTGATAACAT-TAATATAATT
*
9997654 TTGATAATCATTTATATAATT
1 TTGATAA-CATTAATATAATT
9997675 TTGATAAC
1 TTGATAAC
9997683 TTTTGACAAA
Statistics
Matches: 56, Mismatches: 12, Indels: 8
0.74 0.16 0.11
Matches are distributed among these distances:
20 3 0.05
21 42 0.75
22 10 0.18
23 1 0.02
ACGTcount: A:0.37, C:0.08, G:0.08, T:0.48
Consensus pattern (20 bp):
TTGATAACATTAATATAATT
Found at i:9997744 original size:10 final size:10
Alignment explanation
Indices: 9997671--9997744 Score: 51
Period size: 10 Copynumber: 7.1 Consensus size: 10
9997661 TCATTTATAT
9997671 AATTTTGATA
1 AATTTTGATA
* *
9997681 ACTTTTGACAA
1 AATTTTGA-TA
9997692 AATTTT-AGTA
1 AATTTTGA-TA
* *
9997702 ATTTATTGGTA
1 AATT-TTGATA
*
9997713 TAATTTTGGTA
1 -AATTTTGATA
*
9997724 AATTTTAATA
1 AATTTTGATA
9997734 AATTTTGATA
1 AATTTTGATA
9997744 A
1 A
9997745 CTTATGATAT
Statistics
Matches: 49, Mismatches: 11, Indels: 8
0.72 0.16 0.12
Matches are distributed among these distances:
10 30 0.61
11 16 0.33
12 3 0.06
ACGTcount: A:0.38, C:0.03, G:0.11, T:0.49
Consensus pattern (10 bp):
AATTTTGATA
Found at i:9998440 original size:22 final size:22
Alignment explanation
Indices: 9998383--9998505 Score: 97
Period size: 22 Copynumber: 5.6 Consensus size: 22
9998373 ATTATAACAG
* * *
9998383 AAATTAATAATAACTTAATAAT
1 AAATTATTGATAACTTAATAGT
* * * *
9998405 -AATTCATCGTTAATTTAGTAGT
1 AAATT-ATTGATAACTTAATAGT
*
9998427 AAATTATTGATAATTTAATAGT
1 AAATTATTGATAACTTAATAGT
*
9998449 AAATT-TGTGATACCTTAATAGT
1 AAATTAT-TGATAACTTAATAGT
* * *
9998471 AAGTCATTCATAACTTAATAGT
1 AAATTATTGATAACTTAATAGT
*
9998493 AAATTAATGATAA
1 AAATTATTGATAA
9998506 GTATTAAGTT
Statistics
Matches: 77, Mismatches: 20, Indels: 8
0.73 0.19 0.08
Matches are distributed among these distances:
21 5 0.06
22 67 0.87
23 5 0.06
ACGTcount: A:0.45, C:0.07, G:0.09, T:0.40
Consensus pattern (22 bp):
AAATTATTGATAACTTAATAGT
Found at i:9998609 original size:22 final size:21
Alignment explanation
Indices: 9998582--9998719 Score: 79
Period size: 22 Copynumber: 6.4 Consensus size: 21
9998572 ATTAGTTATA
9998582 ATAGTAAATCAATGATAACTT
1 ATAGTAAATCAATGATAACTT
9998603 AGTAGTAAATCAAT-ATTAA-TGT
1 A-TAGTAAATCAATGA-TAACT-T
* *
9998625 AATAGTAAAT-TATCAATAACTTT
1 -ATAGTAAATCAAT-GATAAC-TT
**
9998648 ATAGTAAATCTTTGATAA-TT
1 ATAGTAAATCAATGATAACTT
* * *
9998668 -TAGTAAATCATTGAGAATTT
1 ATAGTAAATCAATGATAACTT
* *
9998688 AATAATAAATCAATATATAACTT
1 -ATAGTAAATCAAT-GATAACTT
9998711 AGTAGTAAA
1 A-TAGTAAA
9998720 ATGTTATCTA
Statistics
Matches: 92, Mismatches: 11, Indels: 26
0.71 0.09 0.20
Matches are distributed among these distances:
19 15 0.16
20 4 0.04
21 5 0.05
22 51 0.55
23 16 0.17
24 1 0.01
ACGTcount: A:0.47, C:0.07, G:0.09, T:0.37
Consensus pattern (21 bp):
ATAGTAAATCAATGATAACTT
Found at i:9998673 original size:19 final size:19
Alignment explanation
Indices: 9998649--9998688 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
9998639 AATAACTTTA
* *
9998649 TAGTAAATCTTTGATAATT
1 TAGTAAATCATTGAGAATT
9998668 TAGTAAATCATTGAGAATT
1 TAGTAAATCATTGAGAATT
9998687 TA
1 TA
9998689 ATAATAAATC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.40, C:0.05, G:0.12, T:0.42
Consensus pattern (19 bp):
TAGTAAATCATTGAGAATT
Found at i:10004291 original size:33 final size:33
Alignment explanation
Indices: 10004248--10004314 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
10004238 CAAGTTCTTT
10004248 TACTTGTAAAGATCACACAGACACATTAAATAC
1 TACTTGTAAAGATCACACAGACACATTAAATAC
*
10004281 TACTTTTAAAGATCACACAGACACATTAAATAC
1 TACTTGTAAAGATCACACAGACACATTAAATAC
10004314 T
1 T
10004315 TAACTAACTC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.45, C:0.21, G:0.07, T:0.27
Consensus pattern (33 bp):
TACTTGTAAAGATCACACAGACACATTAAATAC
Found at i:10006004 original size:19 final size:18
Alignment explanation
Indices: 10005980--10006020 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
10005970 TGCTATCAGT
*
10005980 TTTTTTTAAATTACTATAC
1 TTTTTTAAAATTACTA-AC
*
10005999 TTTTTTAAAATTATTAAC
1 TTTTTTAAAATTACTAAC
10006017 TTTT
1 TTTT
10006021 AATTAAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 6 0.30
19 14 0.70
ACGTcount: A:0.32, C:0.07, G:0.00, T:0.61
Consensus pattern (18 bp):
TTTTTTAAAATTACTAAC
Found at i:10009628 original size:59 final size:59
Alignment explanation
Indices: 10009541--10009658 Score: 218
Period size: 59 Copynumber: 2.0 Consensus size: 59
10009531 ATCTTAAAAG
*
10009541 ATGAGAAGTTAAGAAAAGGAAGTCAAGAGTAACTGCAATATCATACTCTGGTTAATCTT
1 ATGAGAAGTTAAGAAAAGGAAGTCAAGAGTAACTGCAATATCATACTCTAGTTAATCTT
*
10009600 ATGAGAAGTTAAGAAAAGGAAGTCAAGAGTAACTGCAATATCATAGTCTAGTTAATCTT
1 ATGAGAAGTTAAGAAAAGGAAGTCAAGAGTAACTGCAATATCATACTCTAGTTAATCTT
10009659 TTAGTTAAGC
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
59 57 1.00
ACGTcount: A:0.42, C:0.11, G:0.20, T:0.27
Consensus pattern (59 bp):
ATGAGAAGTTAAGAAAAGGAAGTCAAGAGTAACTGCAATATCATACTCTAGTTAATCTT
Found at i:10011197 original size:2 final size:2
Alignment explanation
Indices: 10011190--10011214 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
10011180 TGAGTTAAAA
10011190 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
10011215 GTAATTTCAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:10014206 original size:60 final size:59
Alignment explanation
Indices: 10014119--10014236 Score: 166
Period size: 60 Copynumber: 2.0 Consensus size: 59
10014109 AGTGAGGAAC
* *
10014119 CCTTGAAACCTAATTGTTTTCTCACTACCTTAAATAAGTTGCAATTTTAAAAATTTCAAT
1 CCTTAAAACCTAATTGTTTTCTCACTACCTTAAATAAGTAGCAATTTT-AAAATTTCAAT
* * *
10014179 CCTTAAAACCTAATT-TTTGTCTGACTACTTTAAATAAGTAGCAATTTTGAAATTTCAA
1 CCTTAAAACCTAATTGTTT-TCTCACTACCTTAAATAAGTAGCAATTTTAAAATTTCAA
10014237 ACTGACAGGC
Statistics
Matches: 52, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
59 12 0.23
60 40 0.77
ACGTcount: A:0.36, C:0.17, G:0.08, T:0.40
Consensus pattern (59 bp):
CCTTAAAACCTAATTGTTTTCTCACTACCTTAAATAAGTAGCAATTTTAAAATTTCAAT
Found at i:10018544 original size:20 final size:22
Alignment explanation
Indices: 10018505--10018544 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
10018495 TAGCAATCTG
*
10018505 ATATACATATATGGTACAGCTA
1 ATATACATATATGATACAGCTA
10018527 ATATACATATA-GAT-CAGC
1 ATATACATATATGATACAGC
10018545 ATCTCTACGA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 2 0.12
22 11 0.65
ACGTcount: A:0.42, C:0.15, G:0.12, T:0.30
Consensus pattern (22 bp):
ATATACATATATGATACAGCTA
Found at i:10019875 original size:2 final size:2
Alignment explanation
Indices: 10019868--10019892 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
10019858 AGTTTTCTAC
10019868 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
10019893 TATTTTAGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:10021271 original size:43 final size:43
Alignment explanation
Indices: 10021210--10021294 Score: 154
Period size: 43 Copynumber: 2.0 Consensus size: 43
10021200 CAATCATTAG
10021210 ATAAGAAAAAAGCAAGAAGTTTTGCA-GTGTATGACAGGACTAA
1 ATAAGAAAAAAGCAAGAAGTTTTG-AGGTGTATGACAGGACTAA
10021253 ATAAGAAAAAAGCAAGAAGTTTTGAGGTGTATGACAGGACTA
1 ATAAGAAAAAAGCAAGAAGTTTTGAGGTGTATGACAGGACTA
10021295 CGTCCAAAGG
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
42 1 0.02
43 40 0.98
ACGTcount: A:0.46, C:0.08, G:0.25, T:0.21
Consensus pattern (43 bp):
ATAAGAAAAAAGCAAGAAGTTTTGAGGTGTATGACAGGACTAA
Found at i:10023115 original size:16 final size:16
Alignment explanation
Indices: 10023094--10023128 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
10023084 TTCTGTCTGT
10023094 ATTAACACTTGTATGC
1 ATTAACACTTGTATGC
10023110 ATTAACACTTGTATGC
1 ATTAACACTTGTATGC
10023126 ATT
1 ATT
10023129 GCACCAAAGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.31, C:0.17, G:0.11, T:0.40
Consensus pattern (16 bp):
ATTAACACTTGTATGC
Found at i:10027317 original size:26 final size:26
Alignment explanation
Indices: 10027288--10027340 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
10027278 CATATAAAAT
10027288 TTTTTA-ATAAATATTTAAATT-AAA
1 TTTTTAGATAAATATTTAAATTGAAA
*
10027312 TATTTTAGATAATTATTTAAATTGAAA
1 T-TTTTAGATAAATATTTAAATTGAAA
10027339 TT
1 TT
10027341 AATATCTATC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
24 1 0.04
25 5 0.20
26 15 0.60
27 4 0.16
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (26 bp):
TTTTTAGATAAATATTTAAATTGAAA
Found at i:10038750 original size:23 final size:21
Alignment explanation
Indices: 10038703--10038756 Score: 76
Period size: 20 Copynumber: 2.6 Consensus size: 21
10038693 ATGATATTTT
10038703 TAAATA-TTTATATTTAAAAA
1 TAAATATTTTATATTTAAAAA
10038723 T-AATATTTTATATTTAAAAAAA
1 TAAATATTTTATATTT--AAAAA
10038745 TAAATATTTTAT
1 TAAATATTTTAT
10038757 TAATTCGTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.13
20 10 0.33
22 6 0.20
23 10 0.33
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (21 bp):
TAAATATTTTATATTTAAAAA
Found at i:10039332 original size:25 final size:24
Alignment explanation
Indices: 10039293--10039341 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 24
10039283 ATTATTTATA
10039293 AAATTAAAAAATTTTACTA-TTAAT
1 AAATTAAAAAATTTTA-TACTTAAT
*
10039317 AAATTAAATAATTTTTATACTTAAT
1 AAATTAAA-AAATTTTATACTTAAT
10039342 TTAATTGCTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 10 0.45
25 12 0.55
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (24 bp):
AAATTAAAAAATTTTATACTTAAT
Found at i:10039615 original size:34 final size:32
Alignment explanation
Indices: 10039513--10039616 Score: 84
Period size: 33 Copynumber: 3.1 Consensus size: 32
10039503 TTCATATAAA
* **
10039513 TTTTTGAAAATAAATATTT-ATAACTTTATAAATT
1 TTTTTG-AAATAAAT-TTTGAAAACTTT-TAAAAC
* ***
10039547 TTTTTGAAATAAATTTTTGAAAAATCAAAAAAC
1 TTTTTGAAATAAA-TTTTGAAAACTTTTAAAAC
10039580 TTTTTGAACATAAATTTTGAAAACTTTTAAGAAC
1 TTTTTGAA-ATAAATTTTGAAAACTTTTAA-AAC
10039614 TTT
1 TTT
10039617 ATTAAAATCT
Statistics
Matches: 55, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
33 33 0.60
34 22 0.40
ACGTcount: A:0.44, C:0.06, G:0.06, T:0.44
Consensus pattern (32 bp):
TTTTTGAAATAAATTTTGAAAACTTTTAAAAC
Found at i:10040297 original size:2 final size:2
Alignment explanation
Indices: 10040251--10040278 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
10040241 AAGAAGAAAG
10040251 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10040279 TCTCTTATGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:10042457 original size:30 final size:30
Alignment explanation
Indices: 10042387--10042458 Score: 74
Period size: 30 Copynumber: 2.4 Consensus size: 30
10042377 ATACGACTCA
* * * *
10042387 AAATTAAT-AAAATATTATTTTTTAAATAT
1 AAATAAATAAAAATATCATTATATAAATAT
**
10042416 AAATATTTAAAAATATCATTATATAAATAT
1 AAATAAATAAAAATATCATTATATAAATAT
*
10042446 ATATAAATAAAAA
1 AAATAAATAAAAA
10042459 ATTAAATAAT
Statistics
Matches: 33, Mismatches: 9, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
29 5 0.15
30 28 0.85
ACGTcount: A:0.58, C:0.01, G:0.00, T:0.40
Consensus pattern (30 bp):
AAATAAATAAAAATATCATTATATAAATAT
Found at i:10051646 original size:4 final size:4
Alignment explanation
Indices: 10051637--10051668 Score: 64
Period size: 4 Copynumber: 8.0 Consensus size: 4
10051627 TAGAATAGTG
10051637 TATT TATT TATT TATT TATT TATT TATT TATT
1 TATT TATT TATT TATT TATT TATT TATT TATT
10051669 CCATTTCTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (4 bp):
TATT
Found at i:10053041 original size:2 final size:2
Alignment explanation
Indices: 10053034--10053066 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
10053024 TTCCATGAGA
*
10053034 AT AT AT AT AC AT AT AT A- AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10053067 TGTTGTTGGA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:10053055 original size:17 final size:17
Alignment explanation
Indices: 10053033--10053066 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
10053023 GTTCCATGAG
10053033 AATATATATACATATAT
1 AATATATATACATATAT
*
10053050 AATATATATATATATAT
1 AATATATATACATATAT
10053067 TGTTGTTGGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (17 bp):
AATATATATACATATAT
Found at i:10053056 original size:15 final size:15
Alignment explanation
Indices: 10053036--10053065 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
10053026 CCATGAGAAT
10053036 ATATATACATATATA
1 ATATATACATATATA
*
10053051 ATATATATATATATA
1 ATATATACATATATA
10053066 TTGTTGTTGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.43
Consensus pattern (15 bp):
ATATATACATATATA
Found at i:10054219 original size:44 final size:44
Alignment explanation
Indices: 10054140--10054238 Score: 137
Period size: 44 Copynumber: 2.2 Consensus size: 44
10054130 TAATATAATA
* * * *
10054140 ATTTTATATATTTATATAAGATTAATGATACATTATAATGTTAG
1 ATTTTATATATTTATATAAAATCAATCATAAATTATAATGTTAG
*
10054184 ATTTT-TATTTTTATTATAAAATCAATCATAAATTATAATGTTAG
1 ATTTTATATATTTA-TATAAAATCAATCATAAATTATAATGTTAG
10054228 ATTTTATATAT
1 ATTTTATATAT
10054239 ACGGGTTATG
Statistics
Matches: 47, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
43 7 0.15
44 36 0.77
45 4 0.09
ACGTcount: A:0.40, C:0.03, G:0.06, T:0.51
Consensus pattern (44 bp):
ATTTTATATATTTATATAAAATCAATCATAAATTATAATGTTAG
Found at i:10056032 original size:40 final size:40
Alignment explanation
Indices: 10055977--10056052 Score: 143
Period size: 40 Copynumber: 1.9 Consensus size: 40
10055967 TTATTCATTT
*
10055977 GTATTCAAAACCAAAACCAACTATTCATGATATAAAAGAG
1 GTATTAAAAACCAAAACCAACTATTCATGATATAAAAGAG
10056017 GTATTAAAAACCAAAACCAACTATTCATGATATAAA
1 GTATTAAAAACCAAAACCAACTATTCATGATATAAA
10056053 CTATCTTTAA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.51, C:0.17, G:0.08, T:0.24
Consensus pattern (40 bp):
GTATTAAAAACCAAAACCAACTATTCATGATATAAAAGAG
Found at i:10068017 original size:16 final size:16
Alignment explanation
Indices: 10067996--10068031 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
10067986 CCTTTCTTTT
10067996 CCACATACATAAGCAC
1 CCACATACATAAGCAC
10068012 CCACATACATAAGCAC
1 CCACATACATAAGCAC
10068028 CCAC
1 CCAC
10068032 TTTAATGAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.42, C:0.42, G:0.06, T:0.11
Consensus pattern (16 bp):
CCACATACATAAGCAC
Found at i:10068794 original size:12 final size:12
Alignment explanation
Indices: 10068777--10068802 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
10068767 ACAACTTCGC
10068777 TTATACAACTTT
1 TTATACAACTTT
10068789 TTATACAACTTT
1 TTATACAACTTT
10068801 TT
1 TT
10068803 GGTTGTGGGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.15, G:0.00, T:0.54
Consensus pattern (12 bp):
TTATACAACTTT
Found at i:10069004 original size:20 final size:21
Alignment explanation
Indices: 10068981--10069022 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
10068971 TTTATAAGAT
10068981 ATTTTTTAATCAT-AAATATA
1 ATTTTTTAATCATCAAATATA
* *
10069001 ATTTTTTATTTATCAAATATA
1 ATTTTTTAATCATCAAATATA
10069022 A
1 A
10069023 AAATAGAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.43, C:0.05, G:0.00, T:0.52
Consensus pattern (21 bp):
ATTTTTTAATCATCAAATATA
Found at i:10069097 original size:18 final size:20
Alignment explanation
Indices: 10069053--10069104 Score: 54
Period size: 18 Copynumber: 2.6 Consensus size: 20
10069043 CTTATCTTAT
*
10069053 ATATATATATATATTCGATAA
1 ATATATA-ATTTATTCGATAA
10069074 ATTATATAATTTA-TCGA-AA
1 A-TATATAATTTATTCGATAA
*
10069093 ATATATATTTTA
1 ATATATAATTTA
10069105 AAATTTTAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
18 10 0.36
19 3 0.11
20 4 0.14
21 5 0.18
22 6 0.21
ACGTcount: A:0.46, C:0.04, G:0.04, T:0.46
Consensus pattern (20 bp):
ATATATAATTTATTCGATAA
Found at i:10071728 original size:16 final size:16
Alignment explanation
Indices: 10071690--10071728 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
10071680 CTGAAATATT
* *
10071690 ATTTGAATTTAAAATA
1 ATTTGAACTTAAAAAA
*
10071706 ATCTGAACTTAAAAAA
1 ATTTGAACTTAAAAAA
10071722 ATTTGAA
1 ATTTGAA
10071729 ATTGCATGTT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.51, C:0.05, G:0.08, T:0.36
Consensus pattern (16 bp):
ATTTGAACTTAAAAAA
Found at i:10073865 original size:14 final size:14
Alignment explanation
Indices: 10073834--10073868 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
10073824 ATCATCGAAA
**
10073834 AATTTTTATTTTTT
1 AATTTTTATTTTAG
10073848 AATTTTTATTTTAG
1 AATTTTTATTTTAG
10073862 AATTTTT
1 AATTTTT
10073869 TACAATTATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (14 bp):
AATTTTTATTTTAG
Found at i:10073890 original size:24 final size:22
Alignment explanation
Indices: 10073839--10073890 Score: 52
Period size: 24 Copynumber: 2.3 Consensus size: 22
10073829 CGAAAAATTT
10073839 TTATTTTTTAATTTTTATTTTA
1 TTATTTTTTAATTTTTATTTTA
**
10073861 GAATTTTTTACAATTATTT-TTTTA
1 TTATTTTTT--AATT-TTTATTTTA
10073885 TTATTT
1 TTATTT
10073891 ACTGTAAAGA
Statistics
Matches: 23, Mismatches: 4, Indels: 4
0.74 0.13 0.13
Matches are distributed among these distances:
22 7 0.30
24 13 0.57
25 3 0.13
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.71
Consensus pattern (22 bp):
TTATTTTTTAATTTTTATTTTA
Found at i:10074845 original size:24 final size:24
Alignment explanation
Indices: 10074818--10074863 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
10074808 ATTTTTAATG
10074818 TAAATATAAAATTAAATAAATATA
1 TAAATATAAAATTAAATAAATATA
10074842 TAAATATAAAATTAAATAAATA
1 TAAATATAAAATTAAATAAATA
10074864 ATTAAAAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (24 bp):
TAAATATAAAATTAAATAAATATA
Found at i:10074869 original size:24 final size:25
Alignment explanation
Indices: 10074813--10074869 Score: 91
Period size: 24 Copynumber: 2.4 Consensus size: 25
10074803 TATTAATTTT
*
10074813 TAATGTAAATATAAAATTAAATAAA
1 TAATATAAATATAAAATTAAATAAA
10074838 T-ATATAAATATAAAATTAAATAAA
1 TAATATAAATATAAAATTAAATAAA
10074862 TAAT-TAAA
1 TAATATAAA
10074870 AAATAATTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
24 27 0.90
25 3 0.10
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (25 bp):
TAATATAAATATAAAATTAAATAAA
Found at i:10074872 original size:20 final size:20
Alignment explanation
Indices: 10074834--10074873 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
10074824 TAAAATTAAA
* *
10074834 TAAATATATAAATATAAAAT
1 TAAATAAATAAATAAAAAAT
*
10074854 TAAATAAATAATTAAAAAAT
1 TAAATAAATAAATAAAAAAT
10074874 AATTTATATA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (20 bp):
TAAATAAATAAATAAAAAAT
Found at i:10074875 original size:11 final size:12
Alignment explanation
Indices: 10074813--10074877 Score: 66
Period size: 12 Copynumber: 5.4 Consensus size: 12
10074803 TATTAATTTT
10074813 TAATGTAAATATAA
1 TAAT-TAAATA-AA
10074827 -AATTAAATAAA
1 TAATTAAATAAA
10074838 T-ATATAAATATAA
1 TAAT-TAAATA-AA
10074851 -AATTAAATAAA
1 TAATTAAATAAA
10074862 TAATTAAA-AAA
1 TAATTAAATAAA
10074873 TAATT
1 TAATT
10074878 TATATATATA
Statistics
Matches: 46, Mismatches: 0, Indels: 13
0.78 0.00 0.22
Matches are distributed among these distances:
11 14 0.30
12 25 0.54
13 7 0.15
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.34
Consensus pattern (12 bp):
TAATTAAATAAA
Found at i:10079730 original size:15 final size:16
Alignment explanation
Indices: 10079697--10079750 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 16
10079687 TTATTGTTGA
*
10079697 TGTTATTATC-ATTAG
1 TGTTATTATCTATTAT
10079712 TGTTATT-TCTATTAT
1 TGTTATTATCTATTAT
* *
10079727 TGTTGTTGT-TATTAT
1 TGTTATTATCTATTAT
10079742 TGTTCATTA
1 TGTT-ATTA
10079751 GAAAAGATTC
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
14 2 0.06
15 27 0.84
16 3 0.09
ACGTcount: A:0.20, C:0.06, G:0.13, T:0.61
Consensus pattern (16 bp):
TGTTATTATCTATTAT
Found at i:10085961 original size:21 final size:22
Alignment explanation
Indices: 10085937--10085983 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 22
10085927 AATACAGCTC
*
10085937 TATATTACATCTAATTA-TTTG
1 TATATTACATATAATTATTTTG
* *
10085958 TATATTATATATATTTATTTTG
1 TATATTACATATAATTATTTTG
10085980 TATA
1 TATA
10085984 AATTATTATA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 14 0.64
22 8 0.36
ACGTcount: A:0.34, C:0.04, G:0.04, T:0.57
Consensus pattern (22 bp):
TATATTACATATAATTATTTTG
Found at i:10091157 original size:30 final size:31
Alignment explanation
Indices: 10091089--10091165 Score: 74
Period size: 30 Copynumber: 2.6 Consensus size: 31
10091079 TTTCATTATT
10091089 AATTATTAATTAATACAAATTAATATTAATCA
1 AATTATTAATTAATA-AAATTAATATTAATCA
* *
10091121 CA--ATTAATTAAT-AAATTAA-ATTAGATTA
1 AATTATTAATTAATAAAATTAATATTA-ATCA
*
10091149 AATTATTAA-AAATAAAA
1 AATTATTAATTAATAAAA
10091166 ATTATCCTAT
Statistics
Matches: 37, Mismatches: 4, Indels: 10
0.73 0.08 0.20
Matches are distributed among these distances:
27 4 0.11
28 11 0.30
29 3 0.08
30 18 0.49
32 1 0.03
ACGTcount: A:0.57, C:0.04, G:0.01, T:0.38
Consensus pattern (31 bp):
AATTATTAATTAATAAAATTAATATTAATCA
Found at i:10091250 original size:19 final size:19
Alignment explanation
Indices: 10091224--10091278 Score: 76
Period size: 19 Copynumber: 2.9 Consensus size: 19
10091214 ATTTTGTTTA
10091224 TTCTTTTCT-TTCTTCTTT
1 TTCTTTTCTCTTCTTCTTT
*
10091242 TTCTCTTTCTCTTCATCTTT
1 TTCT-TTTCTCTTCTTCTTT
*
10091262 TTCATTTCTCTTCTTCT
1 TTCTTTTCTCTTCTTCT
10091279 CTCAACTATT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
18 4 0.12
19 17 0.53
20 11 0.34
ACGTcount: A:0.04, C:0.27, G:0.00, T:0.69
Consensus pattern (19 bp):
TTCTTTTCTCTTCTTCTTT
Found at i:10093281 original size:11 final size:11
Alignment explanation
Indices: 10093265--10093294 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
10093255 CATCTTGTCC
10093265 TATAATAAACA
1 TATAATAAACA
*
10093276 TATAATCAACA
1 TATAATAAACA
10093287 TATAATAA
1 TATAATAA
10093295 GAGAATAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.60, C:0.10, G:0.00, T:0.30
Consensus pattern (11 bp):
TATAATAAACA
Found at i:10095002 original size:14 final size:14
Alignment explanation
Indices: 10094985--10095013 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
10094975 GAATTGAGAA
10094985 ACATACCTTTGGTT
1 ACATACCTTTGGTT
10094999 ACATACCTTTGGTT
1 ACATACCTTTGGTT
10095013 A
1 A
10095014 AGGGAATGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.24, C:0.21, G:0.14, T:0.41
Consensus pattern (14 bp):
ACATACCTTTGGTT
Found at i:10097747 original size:34 final size:34
Alignment explanation
Indices: 10097708--10097780 Score: 92
Period size: 34 Copynumber: 2.1 Consensus size: 34
10097698 TAATTTTTTG
* *
10097708 AAAATGAATTTTTGAAAAGTGATAAATTTTTCCA
1 AAAATGAATTTCTGAAAAGTGATAAATCTTTCCA
* * * *
10097742 GAAATGGATTTCTGGAAAGTTATAAATCTTTCCA
1 AAAATGAATTTCTGAAAAGTGATAAATCTTTCCA
10097776 AAAAT
1 AAAAT
10097781 TTAACTTTTG
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.42, C:0.08, G:0.14, T:0.36
Consensus pattern (34 bp):
AAAATGAATTTCTGAAAAGTGATAAATCTTTCCA
Found at i:10099638 original size:15 final size:15
Alignment explanation
Indices: 10099618--10099648 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
10099608 GTAAACAACT
10099618 GATGATGATGACGAC
1 GATGATGATGACGAC
*
10099633 GATGATGATGATGAC
1 GATGATGATGACGAC
10099648 G
1 G
10099649 GAGACTAGCC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.32, C:0.10, G:0.35, T:0.23
Consensus pattern (15 bp):
GATGATGATGACGAC
Found at i:10107465 original size:373 final size:371
Alignment explanation
Indices: 10105970--10107816 Score: 3409
Period size: 373 Copynumber: 5.0 Consensus size: 371
10105960 GATAATGAAG
10105970 TGGAATTGAATGAAATCAGTTGAAGTGTTCTTATTTTTGTTGTCACTGAGCGTGCAAAGGTATTC
1 TGGAATTGAATGAAATCAGTTGAAGTGTTCTTATTTTTGTTGTCACTGAGCGTGCAAAGGTATTC
*
10106035 TAGAGGTTTGAATCTCTGACCTTGGCCCTGGAACCAAGGCTTTAACAAGTTAGTCGGTACCAATT
66 TAGAGGTTTGAATCTCTGACCTTGGCCCTGGAACCAAGGCTTTAACAAGTTAGTCAGTACCAATT
10106100 CTAGTAGGCTATATTTGGTGAGGAGGCCTTTGTTTTTTTTTTTTTTTGCTACCTTGTCTGTTCCC
131 CTAGTAGGCTATATTTGGTGAGGAGGCCTTTG-TTTTTTTTTTTTTTGCTACCTTGTCTGTTCCC
10106165 AGATGATGCAATCTGATTCCTACTCTTGGATTGGAAGAATCAATGCGGAAATTGCTTAACTACCA
195 AGATGATGCAATCTGATTCCTACTCTTGGATTGGAAGAATCAATGCGGAAATTGCTTAACTACCA
10106230 GCTAAACTTATTTTGTGATTGAACTGGTCACAGTAGGAACATC-TTTGTTATAAAACATGATTTT
260 GCTAAACTTATTTTGTGATTGAACTGGTCACAGTAGGAACATCTTTTGTTATAAAACATGATTTT
10106294 AATTGTTTT-GGATCTGAATTG-TTTTATTTGGTTGGAGGATTTTTA
325 AATTGTTTTGGGATCTGAATTGTTTTTATTTGGTTGGAGGATTTTTA
* *
10106339 TGGAATTGAATGAAAATCGGTTGAAGAGTTCTTATTTTTGTTGTCACTGAGCGTGCAAAGGTATT
1 TGGAATTGAATG-AAATCAGTTGAAGTGTTCTTATTTTTGTTGTCACTGAGCGTGCAAAGGTATT
10106404 CTAGAGGTTTGAATCTCTGACCTTGGCCCTGGAACCAAGGC-TT-ACAAGTTAGTCAGTACCAAT
65 CTAGAGGTTTGAATCTCTGACCTTGGCCCTGGAACCAAGGCTTTAACAAGTTAGTCAGTACCAAT
10106467 TCTAGTAGGCTATATTTGGTGAGGAGGCCTTTG--TTTTTTTTTTTTGCTACC-TGTCTGTTCCC
130 TCTAGTAGGCTATATTTGGTGAGGAGGCCTTTGTTTTTTTTTTTTTTGCTACCTTGTCTGTTCCC
*
10106529 AGATGATGCAATCTGATTCCTACTCTT-GATTGGAAGAATCAATGTGGAAATTGCTTAAACTACC
195 AGATGATGCAATCTGATTCCTACTCTTGGATTGGAAGAATCAATGCGGAAATTGCTT-AACTACC
10106593 AGCTAAACTTATTTTGTGATTGAAACTGGTCACAGTAGGAACATCTTTTGTTATAAAACATGATT
259 AGCTAAACTTATTTTGTGATTG-AACTGGTCACAGTAGGAACATCTTTTGTTATAAAACATGATT
10106658 TTAATTGTTTTGGGATCTGAATTGTTTTTATTTGGTTGGAGGATTTTTA
323 TTAATTGTTTTGGGATCTGAATTGTTTTTATTTGGTTGGAGGATTTTTA
*
10106707 TGGAATTGAATGAAATCGGTTGAAGTGTTCTTATTTTTGTTGTCACTGAGCGTGCAAAGGTATTC
1 TGGAATTGAATGAAATCAGTTGAAGTGTTCTTATTTTTGTTGTCACTGAGCGTGCAAAGGTATTC
10106772 TAGAGGTTTGAATCTCTGACCTTGGCCCTGGAACCAAGGCTTTAACAAGTTAGTCAGTACCAATT
66 TAGAGGTTTGAATCTCTGACCTTGGCCCTGGAACCAAGGCTTTAACAAGTTAGTCAGTACCAATT
10106837 CTAGTAGGCTATATTTGGTGAGGAGGCCTTTGTTTTTTTTTTTTTTGCTACCTTGTCTGTTCCCA
131 CTAGTAGGCTATATTTGGTGAGGAGGCCTTTGTTTTTTTTTTTTTTGCTACCTTGTCTGTTCCCA
* *
10106902 GATGATGCGATCTGATTCCTACTCTTGGATTGGAAGAATCAATGTGGAAATTGCTTAACTACCAG
196 GATGATGCAATCTGATTCCTACTCTTGGATTGGAAGAATCAATGCGGAAATTGCTTAACTACCAG
10106967 CTAAACTTATTTTGTGATTGAACTGGTCACAGTAGGAACATCTTTTGTTATAAAACATGATTTTA
261 CTAAACTTATTTTGTGATTGAACTGGTCACAGTAGGAACATCTTTTGTTATAAAACATGATTTTA
10107032 ATTGTTTTGGGATCTGAATTGTTTTTATTTGGTTGGAGGATTTTTA
326 ATTGTTTTGGGATCTGAATTGTTTTTATTTGGTTGGAGGATTTTTA
*
10107078 TGGAATTGAATGAAATCAGTTGAAGTGTTCTTATTTTTGTTGTCACTGAGTGTGCAAAGGTATTC
1 TGGAATTGAATGAAATCAGTTGAAGTGTTCTTATTTTTGTTGTCACTGAGCGTGCAAAGGTATTC
10107143 TAGAGGTTTGAATCTCTGACCTTGGCCCTGGAACCAAGGCTTTAACAAGTTAGTCAGTACCAATT
66 TAGAGGTTTGAATCTCTGACCTTGGCCCTGGAACCAAGGCTTTAACAAGTTAGTCAGTACCAATT
10107208 CTAGTAGGCTATATTTGGTGAGGAGGCCTTTGTTTTATTTTTTTTTTTGCTACCTTGTCTGTTCC
131 CTAGTAGGCTATATTTGGTGAGGAGGCCTTTG-TTT-TTTTTTTTTTTGCTACCTTGTCTGTTCC
10107273 CAGATGATGCAATCTGATTCCTACTCTTGGATTGGAAGAATCAATGCGGAAATTGCTTAACTACC
194 CAGATGATGCAATCTGATTCCTACTCTTGGATTGGAAGAATCAATGCGGAAATTGCTTAACTACC
10107338 AGCTAAACTTATTTTGTGATTGAACTGGTCACAGTAGGAACATCTTTTGTTATAAAACATGATTT
259 AGCTAAACTTATTTTGTGATTGAACTGGTCACAGTAGGAACATCTTTTGTTATAAAACATGATTT
10107403 TAATTGTTTTGGGATCTGAATTGTTTTTATTTGGTTGGAGGATTTTTA
324 TAATTGTTTTGGGATCTGAATTGTTTTTATTTGGTTGGAGGATTTTTA
*
10107451 TGGAATTGAATGAAATCAGTTGAAGTGTTCTTATTTTTGTTGTCACTGAGTGTGCAAAGGTATTC
1 TGGAATTGAATGAAATCAGTTGAAGTGTTCTTATTTTTGTTGTCACTGAGCGTGCAAAGGTATTC
*
10107516 TAGAGGTTTGAATCTCTGACCTTGGCCCTGGAACCAAGCCTTTAACAAGTTAGTCAGTACCAATT
66 TAGAGGTTTGAATCTCTGACCTTGGCCCTGGAACCAAGGCTTTAACAAGTTAGTCAGTACCAATT
10107581 CTAGTAGGCTATATTTGGT---GAGGCCTTTG---TTTTTTTTTTTGCTACCTTGTCTGTTCCCA
131 CTAGTAGGCTATATTTGGTGAGGAGGCCTTTGTTTTTTTTTTTTTTGCTACCTTGTCTGTTCCCA
*
10107640 GATAATGCAATCTGATTCCTACTCTTGGATTGGAAGAATCAATGCGGAAATTGCTTAACTACCAG
196 GATGATGCAATCTGATTCCTACTCTTGGATTGGAAGAATCAATGCGGAAATTGCTTAACTACCAG
* *
10107705 CTAAACTTATTTTGTGCTTGAACTGGTCACAGTAGGAACATCTTTTGTTATAAGACATGATTTTA
261 CTAAACTTATTTTGTGATTGAACTGGTCACAGTAGGAACATCTTTTGTTATAAAACATGATTTTA
*
10107770 ATTGTTTTGGGATCTGACTTGTTTTTATTTGGTTGGAGGATTTTTA
326 ATTGTTTTGGGATCTGAATTGTTTTTATTTGGTTGGAGGATTTTTA
10107816 T
1 T
10107817 TTTATTCATT
Statistics
Matches: 1449, Mismatches: 15, Indels: 32
0.97 0.01 0.02
Matches are distributed among these distances:
363 28 0.02
364 67 0.05
365 243 0.17
366 30 0.02
367 104 0.07
368 90 0.06
369 67 0.05
370 101 0.07
371 269 0.19
372 69 0.05
373 381 0.26
ACGTcount: A:0.25, C:0.14, G:0.22, T:0.39
Consensus pattern (371 bp):
TGGAATTGAATGAAATCAGTTGAAGTGTTCTTATTTTTGTTGTCACTGAGCGTGCAAAGGTATTC
TAGAGGTTTGAATCTCTGACCTTGGCCCTGGAACCAAGGCTTTAACAAGTTAGTCAGTACCAATT
CTAGTAGGCTATATTTGGTGAGGAGGCCTTTGTTTTTTTTTTTTTTGCTACCTTGTCTGTTCCCA
GATGATGCAATCTGATTCCTACTCTTGGATTGGAAGAATCAATGCGGAAATTGCTTAACTACCAG
CTAAACTTATTTTGTGATTGAACTGGTCACAGTAGGAACATCTTTTGTTATAAAACATGATTTTA
ATTGTTTTGGGATCTGAATTGTTTTTATTTGGTTGGAGGATTTTTA
Found at i:10107782 original size:738 final size:735
Alignment explanation
Indices: 10105970--10107816 Score: 3359
Period size: 738 Copynumber: 2.5 Consensus size: 735
10105960 GATAATGAAG
10105970 TGGAATTGAATGAAATCAGTTGAAGTGTTCTTATTTTTGTTGTCACTGAGCGTGCAAAGGTATTC
1 TGGAATTGAATGAAATCAGTTGAAGTGTTCTTATTTTTGTTGTCACTGAGCGTGCAAAGGTATTC
*
10106035 TAGAGGTTTGAATCTCTGACCTTGGCCCTGGAACCAAGGCTTTAACAAGTTAGTCGGTACCAATT
66 TAGAGGTTTGAATCTCTGACCTTGGCCCTGGAACCAAGGCTTTAACAAGTTAGTCAGTACCAATT
10106100 CTAGTAGGCTATATTTGGTGAGGAGGCCTTTGTTTTTTTTTTTTTTTGCTACCTTGTCTGTTCCC
131 CTAGTAGGCTATATTTGGT--GGAGGCCTTTG---TTTTTTTTTTTTGCTACCTTGTCTGTTCCC
10106165 AGATGATGCAATCTGATTCCTACTCTTGGATTGGAAGAATCAATGCGGAAATTGCTTAACTACCA
191 AGATGATGCAATCTGATTCCTACTCTTGGATTGGAAGAATCAATGCGGAAATTGCTTAACTACCA
10106230 GCTAAACTTATTTTGTGATTGAACTGGTCACAGTAGGAACATC-TTTGTTATAAAACATGATTTT
256 GCTAAACTTATTTTGTGATTGAACTGGTCACAGTAGGAACATCTTTTGTTATAAAACATGATTTT
10106294 AATTGTTTT-GGATCTGAATTG-TTTTATTTGGTTGGAGGATTTTTATGGAATTGAATGAAAATC
321 AATTGTTTTGGGATCTGAATTGTTTTTATTTGGTTGGAGGATTTTTATGGAATTGAATGAAAATC
*
10106357 GGTTGAAGAGTTCTTATTTTTGTTGTCACTGAGCGTGCAAAGGTATTCTAGAGGTTTGAATCTCT
386 AGTTGAAGAGTTCTTATTTTTGTTGTCACTGAGCGTGCAAAGGTATTCTAGAGGTTTGAATCTCT
10106422 GACCTTGGCCCTGGAACCAAGGCTTACAAGTTAGTCAGTACCAATTCTAGTAGGCTATATTTGGT
451 GACCTTGGCCCTGGAACCAAGGCTTACAAGTTAGTCAGTACCAATTCTAGTAGGCTATATTTGGT
10106487 GAGGAGGCCTTTGTTTTTTTTTTTTGCTACCTGTCTGTTCCCAGATGATGCAATCTGATTCCTAC
516 GAGGAGGCCTTTGTTTTTTTTTTTTGCTACCTGTCTGTTCCCAGATGATGCAATCTGATTCCTAC
*
10106552 TCTTGATTGGAAGAATCAATGTGGAAATTGCTTAAACTACCAGCTAAACTTATTTTGTGATTGAA
581 TCTTGATTGGAAGAATCAATGCGGAAATTGCTTAAACTACCAGCTAAACTTATTTTGTGATTGAA
10106617 ACTGGTCACAGTAGGAACATCTTTTGTTATAAAACATGATTTTAATTGTTTTGGGATCTGAATTG
646 ACTGGTCACAGTAGGAACATCTTTTGTTATAAAACATGATTTTAATTGTTTTGGGATCTGAATTG
10106682 TTTTTATTTGGTTGGAGGATTTTTA
711 TTTTTATTTGGTTGGAGGATTTTTA
*
10106707 TGGAATTGAATGAAATCGGTTGAAGTGTTCTTATTTTTGTTGTCACTGAGCGTGCAAAGGTATTC
1 TGGAATTGAATGAAATCAGTTGAAGTGTTCTTATTTTTGTTGTCACTGAGCGTGCAAAGGTATTC
10106772 TAGAGGTTTGAATCTCTGACCTTGGCCCTGGAACCAAGGCTTTAACAAGTTAGTCAGTACCAATT
66 TAGAGGTTTGAATCTCTGACCTTGGCCCTGGAACCAAGGCTTTAACAAGTTAGTCAGTACCAATT
10106837 CTAGTAGGCTATATTTGGTGAGGAGGCCTTTGTTTTTTTTTTTTTTGCTACCTTGTCTGTTCCCA
131 CTAGTAGGCTATATTTGGT--GGAGGCCTTTG--TTTTTTTTTTTTGCTACCTTGTCTGTTCCCA
* *
10106902 GATGATGCGATCTGATTCCTACTCTTGGATTGGAAGAATCAATGTGGAAATTGCTTAACTACCAG
192 GATGATGCAATCTGATTCCTACTCTTGGATTGGAAGAATCAATGCGGAAATTGCTTAACTACCAG
10106967 CTAAACTTATTTTGTGATTGAACTGGTCACAGTAGGAACATCTTTTGTTATAAAACATGATTTTA
257 CTAAACTTATTTTGTGATTGAACTGGTCACAGTAGGAACATCTTTTGTTATAAAACATGATTTTA
10107032 ATTGTTTTGGGATCTGAATTGTTTTTATTTGGTTGGAGGATTTTTATGGAATTGAATG-AAATCA
322 ATTGTTTTGGGATCTGAATTGTTTTTATTTGGTTGGAGGATTTTTATGGAATTGAATGAAAATCA
* *
10107096 GTTGAAGTGTTCTTATTTTTGTTGTCACTGAGTGTGCAAAGGTATTCTAGAGGTTTGAATCTCTG
387 GTTGAAGAGTTCTTATTTTTGTTGTCACTGAGCGTGCAAAGGTATTCTAGAGGTTTGAATCTCTG
10107161 ACCTTGGCCCTGGAACCAAGGCTTTAACAAGTTAGTCAGTACCAATTCTAGTAGGCTATATTTGG
452 ACCTTGGCCCTGGAACCAAGGC-TT-ACAAGTTAGTCAGTACCAATTCTAGTAGGCTATATTTGG
10107226 TGAGGAGGCCTTTGTTTTATTTTTTTTTTTGCTACCTTGTCTGTTCCCAGATGATGCAATCTGAT
515 TGAGGAGGCCTTTG---T-TTTTTTTTTTTGCTACC-TGTCTGTTCCCAGATGATGCAATCTGAT
10107291 TCCTACTCTTGGATTGGAAGAATCAATGCGGAAATTGCTT-AACTACCAGCTAAACTTATTTTGT
575 TCCTACTCTT-GATTGGAAGAATCAATGCGGAAATTGCTTAAACTACCAGCTAAACTTATTTTGT
10107355 GATTG-AACTGGTCACAGTAGGAACATCTTTTGTTATAAAACATGATTTTAATTGTTTTGGGATC
639 GATTGAAACTGGTCACAGTAGGAACATCTTTTGTTATAAAACATGATTTTAATTGTTTTGGGATC
10107419 TGAATTGTTTTTATTTGGTTGGAGGATTTTTA
704 TGAATTGTTTTTATTTGGTTGGAGGATTTTTA
*
10107451 TGGAATTGAATGAAATCAGTTGAAGTGTTCTTATTTTTGTTGTCACTGAGTGTGCAAAGGTATTC
1 TGGAATTGAATGAAATCAGTTGAAGTGTTCTTATTTTTGTTGTCACTGAGCGTGCAAAGGTATTC
*
10107516 TAGAGGTTTGAATCTCTGACCTTGGCCCTGGAACCAAGCCTTTAACAAGTTAGTCAGTACCAATT
66 TAGAGGTTTGAATCTCTGACCTTGGCCCTGGAACCAAGGCTTTAACAAGTTAGTCAGTACCAATT
*
10107581 CTAGTAGGCTATATTTGGT-GAGGCCTTTG-TTTTTTTTTTTGCTACCTTGTCTGTTCCCAGATA
131 CTAGTAGGCTATATTTGGTGGAGGCCTTTGTTTTTTTTTTTTGCTACCTTGTCTGTTCCCAGATG
10107644 ATGCAATCTGATTCCTACTCTTGGATTGGAAGAATCAATGCGGAAATTGCTTAACTACCAGCTAA
196 ATGCAATCTGATTCCTACTCTTGGATTGGAAGAATCAATGCGGAAATTGCTTAACTACCAGCTAA
* *
10107709 ACTTATTTTGTGCTTGAACTGGTCACAGTAGGAACATCTTTTGTTATAAGACATGATTTTAATTG
261 ACTTATTTTGTGATTGAACTGGTCACAGTAGGAACATCTTTTGTTATAAAACATGATTTTAATTG
*
10107774 TTTTGGGATCTGACTTGTTTTTATTTGGTTGGAGGATTTTTAT
326 TTTTGGGATCTGAATTGTTTTTATTTGGTTGGAGGATTTTTAT
10107817 TTTATTCATT
Statistics
Matches: 1082, Mismatches: 17, Indels: 21
0.97 0.02 0.02
Matches are distributed among these distances:
736 138 0.13
737 190 0.18
738 303 0.28
739 38 0.04
740 53 0.05
741 10 0.01
743 1 0.00
744 254 0.23
745 67 0.06
746 28 0.03
ACGTcount: A:0.25, C:0.14, G:0.22, T:0.39
Consensus pattern (735 bp):
TGGAATTGAATGAAATCAGTTGAAGTGTTCTTATTTTTGTTGTCACTGAGCGTGCAAAGGTATTC
TAGAGGTTTGAATCTCTGACCTTGGCCCTGGAACCAAGGCTTTAACAAGTTAGTCAGTACCAATT
CTAGTAGGCTATATTTGGTGGAGGCCTTTGTTTTTTTTTTTTGCTACCTTGTCTGTTCCCAGATG
ATGCAATCTGATTCCTACTCTTGGATTGGAAGAATCAATGCGGAAATTGCTTAACTACCAGCTAA
ACTTATTTTGTGATTGAACTGGTCACAGTAGGAACATCTTTTGTTATAAAACATGATTTTAATTG
TTTTGGGATCTGAATTGTTTTTATTTGGTTGGAGGATTTTTATGGAATTGAATGAAAATCAGTTG
AAGAGTTCTTATTTTTGTTGTCACTGAGCGTGCAAAGGTATTCTAGAGGTTTGAATCTCTGACCT
TGGCCCTGGAACCAAGGCTTACAAGTTAGTCAGTACCAATTCTAGTAGGCTATATTTGGTGAGGA
GGCCTTTGTTTTTTTTTTTTGCTACCTGTCTGTTCCCAGATGATGCAATCTGATTCCTACTCTTG
ATTGGAAGAATCAATGCGGAAATTGCTTAAACTACCAGCTAAACTTATTTTGTGATTGAAACTGG
TCACAGTAGGAACATCTTTTGTTATAAAACATGATTTTAATTGTTTTGGGATCTGAATTGTTTTT
ATTTGGTTGGAGGATTTTTA
Found at i:10111376 original size:14 final size:15
Alignment explanation
Indices: 10111351--10111379 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
10111341 ATTAGTTTTA
10111351 GTTTTTCTATTTAAT
1 GTTTTTCTATTTAAT
10111366 GTTTTTC-ATTTAAT
1 GTTTTTCTATTTAAT
10111380 TTGATTTAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.21, C:0.07, G:0.07, T:0.66
Consensus pattern (15 bp):
GTTTTTCTATTTAAT
Found at i:10120680 original size:3 final size:3
Alignment explanation
Indices: 10120661--10120701 Score: 55
Period size: 3 Copynumber: 13.7 Consensus size: 3
10120651 ATTACAAAAA
* * *
10120661 AAT AAA AAT AAT TAT AAT AAT GAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
10120702 GTTAAAAATT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:10122519 original size:38 final size:38
Alignment explanation
Indices: 10122470--10122548 Score: 97
Period size: 38 Copynumber: 2.1 Consensus size: 38
10122460 AAGGTACTTT
* * * *
10122470 AAAAATTTAAAAATATATATGAAAACT-TAAAAAATTCA
1 AAAAATCTAAAAATATA-ATAAAAAATCCAAAAAATTCA
*
10122508 AAAAATCTAAAAATTTAATAAAAAATCCAAAAAATTCA
1 AAAAATCTAAAAATATAATAAAAAATCCAAAAAATTCA
10122546 AAA
1 AAA
10122549 TTATTTTGAA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
37 7 0.20
38 28 0.80
ACGTcount: A:0.66, C:0.08, G:0.01, T:0.25
Consensus pattern (38 bp):
AAAAATCTAAAAATATAATAAAAAATCCAAAAAATTCA
Found at i:10122577 original size:28 final size:27
Alignment explanation
Indices: 10122536--10122596 Score: 70
Period size: 26 Copynumber: 2.2 Consensus size: 27
10122526 TAAAAAATCC
*
10122536 AAAAAATTCAAAATTATTTTGAAAATTAAA
1 AAAAAATT-AAAATT-TCTT-AAAATTAAA
*
10122566 AAAAAATT-AAATTTCTTAAAATTCAA
1 AAAAAATTAAAATTTCTTAAAATTAAA
10122592 AAAAA
1 AAAAA
10122597 TCGCAAAACT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
26 13 0.45
27 3 0.10
28 5 0.17
30 8 0.28
ACGTcount: A:0.62, C:0.05, G:0.02, T:0.31
Consensus pattern (27 bp):
AAAAAATTAAAATTTCTTAAAATTAAA
Found at i:10122798 original size:19 final size:19
Alignment explanation
Indices: 10122776--10122817 Score: 75
Period size: 19 Copynumber: 2.2 Consensus size: 19
10122766 AAGTTTTAAG
10122776 TTTTTTATTTTTCATAATT
1 TTTTTTATTTTTCATAATT
*
10122795 TTTTTTATTTTTTATAATT
1 TTTTTTATTTTTCATAATT
10122814 TTTT
1 TTTT
10122818 GGCATATTCT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.19, C:0.02, G:0.00, T:0.79
Consensus pattern (19 bp):
TTTTTTATTTTTCATAATT
Found at i:10122896 original size:32 final size:33
Alignment explanation
Indices: 10122860--10122956 Score: 85
Period size: 32 Copynumber: 2.9 Consensus size: 33
10122850 TTTCATAATT
10122860 TTTTAAAATTTT-AAAGAAATTTT-T-TTTATAAA
1 TTTTAAAATTTTAAAAG-AATTTTATATTT-TAAA
* * *
10122892 TTTTAGATTTTTAAAAGAATTTTATATTTTTAA
1 TTTTAAAATTTTAAAAGAATTTTATATTTTAAA
*
10122925 TTTTCAAAATTTTTCAAAA-AATTTTAGATTTT
1 TTTT-AAAA-TTTT-AAAAGAATTTTATATTTT
10122957 TTTATTTTTG
Statistics
Matches: 53, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
32 16 0.30
33 12 0.23
34 5 0.09
35 16 0.30
36 4 0.08
ACGTcount: A:0.39, C:0.02, G:0.04, T:0.55
Consensus pattern (33 bp):
TTTTAAAATTTTAAAAGAATTTTATATTTTAAA
Found at i:10123185 original size:19 final size:19
Alignment explanation
Indices: 10123135--10123176 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
10123125 ATATTTCATA
* *
10123135 TTTTATAATTTTTATATAT
1 TTTTAAAATTTTTAGATAT
10123154 TTTTAAAATTTTTAGAT-T
1 TTTTAAAATTTTTAGATAT
10123172 TTTTA
1 TTTTA
10123177 GAACTTTTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 6 0.29
19 15 0.71
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (19 bp):
TTTTAAAATTTTTAGATAT
Found at i:10123193 original size:9 final size:9
Alignment explanation
Indices: 10123135--10123193 Score: 55
Period size: 9 Copynumber: 6.3 Consensus size: 9
10123125 ATATTTCATA
*
10123135 TTTTATAAT
1 TTTTAGAAT
*
10123144 TTTTATATAT
1 TTTTAGA-AT
*
10123154 TTTTAAAAT
1 TTTTAGAAT
*
10123163 TTTTAGATT
1 TTTTAGAAT
10123172 TTTTAGAACT
1 TTTTAGAA-T
*
10123182 TTTTGGAAT
1 TTTTAGAAT
10123191 TTT
1 TTT
10123194 GAATTGTTTT
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
9 27 0.63
10 16 0.37
ACGTcount: A:0.29, C:0.02, G:0.07, T:0.63
Consensus pattern (9 bp):
TTTTAGAAT
Found at i:10123657 original size:13 final size:13
Alignment explanation
Indices: 10123639--10123664 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
10123629 TTTAAATATA
10123639 AAAAAGTAATTAG
1 AAAAAGTAATTAG
10123652 AAAAAGTAATTAG
1 AAAAAGTAATTAG
10123665 GGGATTATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.00, G:0.15, T:0.23
Consensus pattern (13 bp):
AAAAAGTAATTAG
Found at i:10125897 original size:26 final size:28
Alignment explanation
Indices: 10125862--10125913 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 28
10125852 TCTGTTATTA
*
10125862 TTAATTAA-TTCTATTCCCTTTGTTTTT
1 TTAATTAATTTCTATTCCCTATGTTTTT
*
10125889 TTAA-TAATTTCTATTCTCTATGTTT
1 TTAATTAATTTCTATTCCCTATGTTT
10125914 ATATATCCAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 3 0.14
27 19 0.86
ACGTcount: A:0.21, C:0.13, G:0.04, T:0.62
Consensus pattern (28 bp):
TTAATTAATTTCTATTCCCTATGTTTTT
Found at i:10126684 original size:22 final size:22
Alignment explanation
Indices: 10126654--10126707 Score: 76
Period size: 20 Copynumber: 2.5 Consensus size: 22
10126644 GGTGGTAACT
10126654 AATAGTAAAAAATTACTCAACC
1 AATAGTAAAAAATTACTCAACC
* *
10126676 AATA-T-TAAAATTTCTCAACC
1 AATAGTAAAAAATTACTCAACC
10126696 AATAGTAAAAAA
1 AATAGTAAAAAA
10126708 ATTATTGGCA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
20 17 0.63
21 2 0.07
22 8 0.30
ACGTcount: A:0.56, C:0.15, G:0.04, T:0.26
Consensus pattern (22 bp):
AATAGTAAAAAATTACTCAACC
Found at i:10127898 original size:17 final size:18
Alignment explanation
Indices: 10127855--10127898 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 18
10127845 AATTGAATTT
*
10127855 CTTTATTTTTTTATTATA
1 CTTTATTTTCTTATTATA
* *
10127873 ATTTGTTTTCTT-TTATA
1 CTTTATTTTCTTATTATA
10127890 CTTTATTTT
1 CTTTATTTT
10127899 TTAAAACCAA
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
17 12 0.57
18 9 0.43
ACGTcount: A:0.18, C:0.07, G:0.02, T:0.73
Consensus pattern (18 bp):
CTTTATTTTCTTATTATA
Found at i:10128746 original size:225 final size:217
Alignment explanation
Indices: 10128314--10128764 Score: 661
Period size: 225 Copynumber: 2.0 Consensus size: 217
10128304 TTGAAAAAAA
* *
10128314 TATTTTTATAGTTAAGTTTTTCTTTTGGCCCATATAGCCAGGGATTAGGATTAGGGTTTTTATTA
1 TATTTTTATAGTTAAGTTTTTCTTTTGGCCAATATAGCAAGGGATTAGGATTAGGGTTTTTATTA
** * *
10128379 GTTGGTAAAATGAGGTAGTTTTGGCATAAGAAAAACACAAAAAAAGGGTATAATTGCATCGTTAT
66 GTTGGTAAAATGACATAGTTTTGGCATAAGAAAAACACAAAAAAAGGGTATAATTGCACCCTTAT
* * *
10128444 GCCTCTGAGCCTAGATTCAACTCAATTGCATCCTTAGTTCATTAGATTTAGGATAAATCAAACAG
131 GCCTCTGAGCATAGATTCAACTCAATTACATCCGTAGTTCATTAGATTTAGGATAAATCAAACAG
10128509 TATAAGGTATAATTTATTTATT
196 TATAAGGTATAATTTATTTATT
10128531 TATTTTTATAGTTAAGTTTTTCTTTTGGCCAATATAGCTAAGGATTAGGATTAGGATTAGGGTTT
1 TATTTTTATAGTTAAGTTTTTCTTTTGGCCAATATAGC-AA-G----GGATTAGGATTAGGGTTT
10128596 TTATTAGTTGGTAAAATGACATAGTTTTGGCATAAGAAAAACACAAAAAAATAGGGTATAATTGC
60 TTATTAGTTGGTAAAATGACATAGTTTTGGCATAAGAAAAACAC-AAAAAA-AGGGTATAATTGC
* * *
10128661 ACCCTTATGCCTTTCG-GCATAGATTTAACTCAATTACATCCGTAGTTCATTAGATTTTGGATAA
123 ACCCTTATGCCTCT-GAGCATAGATTCAACTCAATTACATCCGTAGTTCATTAGATTTAGGATAA
* * * *
10128725 ATCAAATAGTATTAGGTATAATTTGTTTGTT
187 ATCAAACAGTATAAGGTATAATTTATTTATT
*
10128756 AATTTTTAT
1 TATTTTTAT
10128765 TTTTATTTAT
Statistics
Matches: 208, Mismatches: 17, Indels: 10
0.89 0.07 0.04
Matches are distributed among these distances:
217 37 0.18
218 1 0.00
219 1 0.00
223 60 0.29
224 6 0.03
225 102 0.49
226 1 0.00
ACGTcount: A:0.33, C:0.11, G:0.18, T:0.39
Consensus pattern (217 bp):
TATTTTTATAGTTAAGTTTTTCTTTTGGCCAATATAGCAAGGGATTAGGATTAGGGTTTTTATTA
GTTGGTAAAATGACATAGTTTTGGCATAAGAAAAACACAAAAAAAGGGTATAATTGCACCCTTAT
GCCTCTGAGCATAGATTCAACTCAATTACATCCGTAGTTCATTAGATTTAGGATAAATCAAACAG
TATAAGGTATAATTTATTTATT
Found at i:10129438 original size:46 final size:44
Alignment explanation
Indices: 10129346--10129439 Score: 109
Period size: 46 Copynumber: 2.1 Consensus size: 44
10129336 AAATTAATAG
* *
10129346 TTTTTAAAATAGTTTAATTTTTTAAAAAATCATAATTTAAATTT
1 TTTTTAAAACAGTTTAATTTTTTAAAAAATAATAATTTAAATTT
* *
10129390 TTTTTAAAACCAGCTTTTATTTTTTAAAAAATTTAAT-ATTTCAATTT
1 TTTTTAAAA-CAG-TTTAATTTTTTAAAAAA--TAATAATTTAAATTT
10129437 TTT
1 TTT
10129440 AGAAATTTTA
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
44 9 0.21
45 2 0.05
46 16 0.38
47 12 0.29
48 3 0.07
ACGTcount: A:0.38, C:0.05, G:0.02, T:0.54
Consensus pattern (44 bp):
TTTTTAAAACAGTTTAATTTTTTAAAAAATAATAATTTAAATTT
Found at i:10129483 original size:44 final size:44
Alignment explanation
Indices: 10129408--10129492 Score: 113
Period size: 44 Copynumber: 1.9 Consensus size: 44
10129398 ACCAGCTTTT
10129408 ATTTTTTAAAAAATTTAATATTTCAATTTTTTAGAAATTTTATAG
1 ATTTTTTAAAAAATTTAATATTTCAATTTTTTA-AAATTTTATAG
*
10129453 ATTTTTT-AAAAATGTTAA-ATTT-AATTTTTTTAATATTTTA
1 ATTTTTTAAAAAAT-TTAATATTTCAA-TTTTTTAAAATTTTA
10129493 ATTCGTTAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
43 9 0.24
44 17 0.46
45 11 0.30
ACGTcount: A:0.39, C:0.01, G:0.04, T:0.56
Consensus pattern (44 bp):
ATTTTTTAAAAAATTTAATATTTCAATTTTTTAAAATTTTATAG
Found at i:10129553 original size:19 final size:19
Alignment explanation
Indices: 10129511--10129560 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
10129501 AAATAAAATT
* **
10129511 CATTTTTTGAAAATTTTTT
1 CATTTTTTTAAAATTTTAA
*
10129530 TATTTTTTTAAAATTTTAA
1 CATTTTTTTAAAATTTTAA
10129549 CATTTTATTTAA
1 CATTTT-TTTAA
10129561 TCAAAGTATT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
19 20 0.80
20 5 0.20
ACGTcount: A:0.32, C:0.04, G:0.02, T:0.62
Consensus pattern (19 bp):
CATTTTTTTAAAATTTTAA
Found at i:10130820 original size:17 final size:18
Alignment explanation
Indices: 10130786--10130820 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
10130776 AACTCCATAG
10130786 CTTTTGATTCTAATTTAAT
1 CTTTTGATTC-AATTTAAT
10130805 CTTTTGATTC-ATTTAA
1 CTTTTGATTCAATTTAA
10130821 ATAAACGTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
19 10 0.62
ACGTcount: A:0.26, C:0.11, G:0.06, T:0.57
Consensus pattern (18 bp):
CTTTTGATTCAATTTAAT
Found at i:10132517 original size:43 final size:45
Alignment explanation
Indices: 10132452--10132553 Score: 129
Period size: 47 Copynumber: 2.3 Consensus size: 45
10132442 AAAACTCCAT
* * * *
10132452 ATTAAAGAT-AATTTATATGCCATAAAAG-TAT-ATGAATATTTG
1 ATTAATGATAAATCTATATGCCATAAAAGACATAATGAATATTAG
10132494 ATTAATGATAAATCTATATGCCATAAAAGCACATGAATGAATATTAG
1 ATTAATGATAAATCTATATGCCATAAAAG-ACAT-AATGAATATTAG
10132541 ATTAATGATAAAT
1 ATTAATGATAAAT
10132554 GCATGAAATT
Statistics
Matches: 51, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
42 8 0.16
43 18 0.35
45 2 0.04
47 23 0.45
ACGTcount: A:0.47, C:0.07, G:0.12, T:0.34
Consensus pattern (45 bp):
ATTAATGATAAATCTATATGCCATAAAAGACATAATGAATATTAG
Found at i:10135505 original size:2 final size:2
Alignment explanation
Indices: 10135498--10135535 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
10135488 TTAACGGTTT
10135498 TC TC TC TC TC TC TC TC TC TC TC TC T- TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
10135536 TTTTTGAAGA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 34 0.97
ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53
Consensus pattern (2 bp):
TC
Found at i:10151338 original size:17 final size:17
Alignment explanation
Indices: 10151311--10151355 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 17
10151301 AATAATTTTT
*
10151311 TATTAAAATTTC-ACTA
1 TATTAATATTTCTACTA
10151327 TATTTAATATTTTCTACTA
1 TA-TTAATA-TTTCTACTA
10151346 TATTAATATT
1 TATTAATATT
10151356 ATTATAAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
16 2 0.08
17 7 0.28
18 10 0.40
19 6 0.24
ACGTcount: A:0.38, C:0.09, G:0.00, T:0.53
Consensus pattern (17 bp):
TATTAATATTTCTACTA
Found at i:10151351 original size:18 final size:18
Alignment explanation
Indices: 10151319--10151355 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
10151309 TTTATTAAAA
10151319 TTTCACTATATTTAATAT
1 TTTCACTATATTTAATAT
10151337 TTTCTACTATA-TTAATAT
1 TTTC-ACTATATTTAATAT
10151355 T
1 T
10151356 ATTATAAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 12 0.67
19 6 0.33
ACGTcount: A:0.32, C:0.11, G:0.00, T:0.57
Consensus pattern (18 bp):
TTTCACTATATTTAATAT
Found at i:10151726 original size:29 final size:29
Alignment explanation
Indices: 10151689--10151748 Score: 75
Period size: 29 Copynumber: 2.1 Consensus size: 29
10151679 AGTTAATAAA
* *
10151689 TTTATAATTTATATACAATATTAAAAATT
1 TTTAAAATTCATATACAATATTAAAAATT
** *
10151718 TTTAAAATTCATATATTATATTAAATATT
1 TTTAAAATTCATATACAATATTAAAAATT
10151747 TT
1 TT
10151749 ACTATATTTA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (29 bp):
TTTAAAATTCATATACAATATTAAAAATT
Found at i:10151817 original size:22 final size:20
Alignment explanation
Indices: 10151780--10151831 Score: 59
Period size: 22 Copynumber: 2.5 Consensus size: 20
10151770 TTACTTTAAC
10151780 ATTTTTTATTAAATTTATTA
1 ATTTTTTATTAAATTTATTA
* *
10151800 ATTTGTTTATTTATATTTATTT
1 ATTT-TTTA-TTAAATTTATTA
*
10151822 ATTTTATATT
1 ATTTTTTATT
10151832 TTATATATTT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
20 6 0.22
21 7 0.26
22 14 0.52
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (20 bp):
ATTTTTTATTAAATTTATTA
Found at i:10151829 original size:15 final size:14
Alignment explanation
Indices: 10151792--10151842 Score: 52
Period size: 15 Copynumber: 3.6 Consensus size: 14
10151782 TTTTTATTAA
10151792 ATTTA-TTA-ATTT
1 ATTTATTTATATTT
*
10151804 GTTTATTTATATTT
1 ATTTATTTATATTT
10151818 ATTTATTTTATATTTT
1 ATTTA-TTTATA-TTT
*
10151834 ATATATTTA
1 ATTTATTTA
10151843 AAATACAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
12 4 0.12
13 3 0.09
14 8 0.25
15 10 0.31
16 7 0.22
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (14 bp):
ATTTATTTATATTT
Found at i:10151834 original size:22 final size:22
Alignment explanation
Indices: 10151792--10151837 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
10151782 TTTTTATTAA
*
10151792 ATTTATTAATTTGTTTATTTAT
1 ATTTATTAATTTGTATATTTAT
*
10151814 ATTTATTTATTT-TATATTTTAT
1 ATTTATTAATTTGTATA-TTTAT
10151836 AT
1 AT
10151838 ATTTAAAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 3 0.14
22 18 0.86
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (22 bp):
ATTTATTAATTTGTATATTTAT
Found at i:10157810 original size:16 final size:16
Alignment explanation
Indices: 10157768--10157889 Score: 89
Period size: 16 Copynumber: 7.9 Consensus size: 16
10157758 AAATATAACA
*
10157768 ATATTATT-ATA-ATA
1 ATATTATTAATATATT
*
10157782 ATATTTTTTAATATATT
1 ATA-TTATTAATATATT
10157799 ATATTATTAATATATT
1 ATATTATTAATATATT
*
10157815 ATATTATTAGTAATATT
1 ATATTATTAAT-ATATT
*
10157832 ATAATA-T-AT-TATT
1 ATATTATTAATATATT
10157845 -TATTAAATTAATAT-TT
1 ATATT--ATTAATATATT
* *
10157861 ATA-TAATAAAATATT
1 ATATTATTAATATATT
*
10157876 ATTTTATTAATATA
1 ATATTATTAATATA
10157890 ATAATTATAG
Statistics
Matches: 84, Mismatches: 12, Indels: 22
0.71 0.10 0.19
Matches are distributed among these distances:
12 3 0.04
13 4 0.05
14 10 0.12
15 10 0.12
16 39 0.46
17 18 0.21
ACGTcount: A:0.45, C:0.00, G:0.01, T:0.54
Consensus pattern (16 bp):
ATATTATTAATATATT
Found at i:10157878 original size:19 final size:20
Alignment explanation
Indices: 10157858--10157897 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
10157848 TAAATTAATA
10157858 TTTATATAATAAAAT-ATTAT
1 TTTAT-TAATAAAATAATTAT
*
10157878 TTTATTAATATAATAATTAT
1 TTTATTAATAAAATAATTAT
10157898 AGCGGTACTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (20 bp):
TTTATTAATAAAATAATTAT
Found at i:10158297 original size:2 final size:2
Alignment explanation
Indices: 10158290--10158316 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
10158280 ACAGTAAGTT
10158290 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
10158317 CGCTACATAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:10160180 original size:16 final size:16
Alignment explanation
Indices: 10160144--10160196 Score: 52
Period size: 16 Copynumber: 3.1 Consensus size: 16
10160134 TATTTTTTAA
*
10160144 AAATTATATTAATAATTT
1 AAATTATA-TAA-ATTTT
10160162 AAATTATATAAATTTT
1 AAATTATATAAATTTT
**
10160178 AAAAAATATATAATTTT
1 AAATTATATA-AATTTT
10160195 AA
1 AA
10160197 TAAATAAATT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
16 12 0.39
17 11 0.35
18 8 0.26
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (16 bp):
AAATTATATAAATTTT
Found at i:10160194 original size:17 final size:17
Alignment explanation
Indices: 10160138--10160212 Score: 62
Period size: 17 Copynumber: 4.3 Consensus size: 17
10160128 TCTAATTATT
*
10160138 TTTTAAAAATTATATTAA
1 TTTTAAAAAATATA-TAA
**
10160156 TAATTTAAATTATATA-AA
1 T--TTTAAAAAATATATAA
10160174 TTTTAAAAAATATATAA
1 TTTTAAAAAATATATAA
* * *
10160191 TTTTAATAAATAAATTA
1 TTTTAAAAAATATATAA
10160208 TTTTA
1 TTTTA
10160213 TTCTATTCTT
Statistics
Matches: 46, Mismatches: 8, Indels: 7
0.75 0.13 0.11
Matches are distributed among these distances:
16 11 0.24
17 21 0.46
18 4 0.09
20 10 0.22
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
TTTTAAAAAATATATAA
Found at i:10161867 original size:64 final size:63
Alignment explanation
Indices: 10161746--10161934 Score: 292
Period size: 64 Copynumber: 3.0 Consensus size: 63
10161736 TTTTTTTTTT
* * *
10161746 TTTTTGAACTAAGAAAGATGGAGG-TCATGTGTTTTTGTGTTTTAAACAACATGTCAAAAATCC
1 TTTTTGAACTAAAAAAGATGGAGGCT-ATGTGTTCTTGTGTTTGAAACAACATGTCAAAAATCC
* *
10161809 TTTTTGAACTAAAAAAGATGGAGGCTATGTGTTCTTGTTGTTTGAAACAACATATCAAAAAAT-T
1 TTTTTGAACTAAAAAAGATGGAGGCTATGTGTTCTTG-TGTTTGAAACAACATGTC-AAAAATCC
10161873 TTTTTGAACTAAAAAAGATGGAGGCTATGTGTTCTTGTGTTTGAAACAACATGTCAAAAATC
1 TTTTTGAACTAAAAAAGATGGAGGCTATGTGTTCTTGTGTTTGAAACAACATGTCAAAAATC
10161935 AACCAGTAGT
Statistics
Matches: 116, Mismatches: 6, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
62 6 0.05
63 50 0.43
64 54 0.47
65 6 0.05
ACGTcount: A:0.35, C:0.11, G:0.19, T:0.35
Consensus pattern (63 bp):
TTTTTGAACTAAAAAAGATGGAGGCTATGTGTTCTTGTGTTTGAAACAACATGTCAAAAATCC
Found at i:10161876 original size:63 final size:63
Alignment explanation
Indices: 10161744--10161932 Score: 292
Period size: 63 Copynumber: 3.0 Consensus size: 63
10161734 TTTTTTTTTT
* * *
10161744 TTTTTTTGAACTAAGAAAGATGGAGG-TCATGTGTTTTTGTGTTTTAAACAACATGTC-AAAAA
1 TTTTTTTGAACTAAAAAAGATGGAGGCT-ATGTGTTCTTGTGTTTGAAACAACATGTCAAAAAA
* *
10161806 TCCTTTTTGAACTAAAAAAGATGGAGGCTATGTGTTCTTGTTGTTTGAAACAACATATCAAAAAA
1 T-TTTTTTGAACTAAAAAAGATGGAGGCTATGTGTTCTTG-TGTTTGAAACAACATGTCAAAAAA
10161871 TTTTTTTGAACTAAAAAAGATGGAGGCTATGTGTTCTTGTGTTTGAAACAACATGTCAAAAA
1 TTTTTTTGAACTAAAAAAGATGGAGGCTATGTGTTCTTGTGTTTGAAACAACATGTCAAAAA
10161933 TCAACCAGTA
Statistics
Matches: 116, Mismatches: 7, Indels: 7
0.89 0.05 0.05
Matches are distributed among these distances:
62 1 0.01
63 55 0.47
64 54 0.47
65 6 0.05
ACGTcount: A:0.35, C:0.10, G:0.19, T:0.36
Consensus pattern (63 bp):
TTTTTTTGAACTAAAAAAGATGGAGGCTATGTGTTCTTGTGTTTGAAACAACATGTCAAAAAA
Found at i:10163206 original size:27 final size:26
Alignment explanation
Indices: 10163152--10163208 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
10163142 GTGATTTCTT
*
10163152 AAAATATATCAAATCTATTAATAAAA
1 AAAATATATCAAATCTATTAACAAAA
*
10163178 AAAATATATGCAAA-C-ATATAACAACA
1 AAAATATAT-CAAATCTAT-TAACAAAA
10163204 AAAAT
1 AAAAT
10163209 TACAATTATA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
25 2 0.07
26 21 0.78
27 4 0.15
ACGTcount: A:0.63, C:0.11, G:0.02, T:0.25
Consensus pattern (26 bp):
AAAATATATCAAATCTATTAACAAAA
Found at i:10163708 original size:21 final size:21
Alignment explanation
Indices: 10163666--10163710 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
10163656 TTAGATTTAA
*
10163666 AATTATTAAAAATCAAACTTT
1 AATTATTAAAAATAAAACTTT
* * *
10163687 AATTATTGAAATTAAAATTTT
1 AATTATTAAAAATAAAACTTT
10163708 AAT
1 AAT
10163711 ATTTTATTAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.42
Consensus pattern (21 bp):
AATTATTAAAAATAAAACTTT
Found at i:10166547 original size:23 final size:23
Alignment explanation
Indices: 10166512--10166556 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
10166502 AAATTCAAAA
*
10166512 TTAATTTAAATCAAATTAATATT
1 TTAATCTAAATCAAATTAATATT
* **
10166535 TTAATCTATATCATTTTAATAT
1 TTAATCTAAATCAAATTAATAT
10166557 GAGTCAAAAA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.42, C:0.07, G:0.00, T:0.51
Consensus pattern (23 bp):
TTAATCTAAATCAAATTAATATT
Found at i:10168315 original size:20 final size:21
Alignment explanation
Indices: 10168292--10168331 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
10168282 ATAATATATA
*
10168292 AAAAATAAA-AAATTAAATTT
1 AAAAATAAATAAACTAAATTT
10168312 AAAAATAAATAAACTAAATT
1 AAAAATAAATAAACTAAATT
10168332 GAACTGATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.28
Consensus pattern (21 bp):
AAAAATAAATAAACTAAATTT
Found at i:10168694 original size:2 final size:2
Alignment explanation
Indices: 10168687--10168723 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
10168677 ATTCAGCTAT
10168687 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
10168724 TTATGTTATT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:10169333 original size:2 final size:2
Alignment explanation
Indices: 10169326--10169367 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
10169316 TTTTAATTAA
10169326 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
10169368 ATGTATGTAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:10184629 original size:11 final size:11
Alignment explanation
Indices: 10184615--10184686 Score: 62
Period size: 10 Copynumber: 6.7 Consensus size: 11
10184605 ACATATAATT
*
10184615 ATTATATTATA
1 ATTATATTAAA
*
10184626 ATTA-ATTAAT
1 ATTATATTAAA
*
10184636 ATAAT-TTAAA
1 ATTATATTAAA
10184646 ATTATA-TAAA
1 ATTATATTAAA
10184656 ATTA-ATTAAA
1 ATTATATTAAA
*
10184666 ATTTTATATAAA
1 ATTATAT-TAAA
10184678 ATTTATATT
1 A-TTATATT
10184687 TATAATTGAT
Statistics
Matches: 48, Mismatches: 7, Indels: 11
0.73 0.11 0.17
Matches are distributed among these distances:
9 1 0.02
10 30 0.62
11 6 0.12
12 6 0.12
13 5 0.10
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (11 bp):
ATTATATTAAA
Found at i:10184664 original size:20 final size:21
Alignment explanation
Indices: 10184641--10184680 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
10184631 TTAATATAAT
10184641 TTAAAA-TTATATAAAATTAA
1 TTAAAATTTATATAAAATTAA
10184661 TTAAAATTTTATATAAAATT
1 TTAAAA-TTTATATAAAATT
10184681 TATATTTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 6 0.33
22 12 0.67
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (21 bp):
TTAAAATTTATATAAAATTAA
Found at i:10184679 original size:12 final size:11
Alignment explanation
Indices: 10184642--10184685 Score: 56
Period size: 11 Copynumber: 4.1 Consensus size: 11
10184632 TAATATAATT
10184642 TAAAA-TTATA
1 TAAAATTTATA
*
10184652 TAAAATTAAT-
1 TAAAATTTATA
10184662 TAAAATTTTATA
1 TAAAA-TTTATA
10184674 TAAAATTTATA
1 TAAAATTTATA
10184685 T
1 T
10184686 TTATAATTGA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
10 10 0.34
11 14 0.48
12 5 0.17
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (11 bp):
TAAAATTTATA
Found at i:10187086 original size:13 final size:13
Alignment explanation
Indices: 10187068--10187097 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
10187058 TTTCTAACTG
10187068 ATGTCCCTGTTTT
1 ATGTCCCTGTTTT
10187081 ATGTCCCTGTTTT
1 ATGTCCCTGTTTT
10187094 ATGT
1 ATGT
10187098 GGATTTGATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.10, C:0.20, G:0.17, T:0.53
Consensus pattern (13 bp):
ATGTCCCTGTTTT
Found at i:10189502 original size:14 final size:14
Alignment explanation
Indices: 10189483--10189510 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
10189473 TTTTCAGGAG
10189483 AATAGAAAAAAATT
1 AATAGAAAAAAATT
10189497 AATAGAAAAAAATT
1 AATAGAAAAAAATT
10189511 GTTATTAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.71, C:0.00, G:0.07, T:0.21
Consensus pattern (14 bp):
AATAGAAAAAAATT
Found at i:10189578 original size:14 final size:15
Alignment explanation
Indices: 10189559--10189589 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
10189549 TAACGTTTGA
10189559 TTAGCA-TTTTTTTT
1 TTAGCAGTTTTTTTT
10189573 TTAGCAGTTTTTTTT
1 TTAGCAGTTTTTTTT
10189588 TT
1 TT
10189590 TTAGTAATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.13, C:0.06, G:0.10, T:0.71
Consensus pattern (15 bp):
TTAGCAGTTTTTTTT
Found at i:10189600 original size:17 final size:17
Alignment explanation
Indices: 10189565--10189600 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
10189555 TTGATTAGCA
*
10189565 TTTTTTTTTTAGCAGTT
1 TTTTTTTTTTAGCAATT
*
10189582 TTTTTTTTTTAGTAATT
1 TTTTTTTTTTAGCAATT
10189599 TT
1 TT
10189601 GTAATTTAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.14, C:0.03, G:0.08, T:0.75
Consensus pattern (17 bp):
TTTTTTTTTTAGCAATT
Found at i:10189762 original size:26 final size:28
Alignment explanation
Indices: 10189733--10189793 Score: 81
Period size: 30 Copynumber: 2.2 Consensus size: 28
10189723 ATTTTCTTTT
10189733 AAAT-TATT-ATCTCTAACTTTTAATTC
1 AAATATATTAATCTCTAACTTTTAATTC
*
10189759 AAATAAATATTAATTTCTAACTTTTAATTC
1 AAAT--ATATTAATCTCTAACTTTTAATTC
10189789 AAATA
1 AAATA
10189794 AATCTTAACT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
26 4 0.13
28 1 0.03
29 4 0.13
30 21 0.70
ACGTcount: A:0.43, C:0.11, G:0.00, T:0.46
Consensus pattern (28 bp):
AAATATATTAATCTCTAACTTTTAATTC
Found at i:10189778 original size:30 final size:30
Alignment explanation
Indices: 10189744--10189801 Score: 107
Period size: 30 Copynumber: 1.9 Consensus size: 30
10189734 AATTATTATC
10189744 TCTAACTTTTAATTCAAATAAATATTAATT
1 TCTAACTTTTAATTCAAATAAATATTAATT
*
10189774 TCTAACTTTTAATTCAAATAAATCTTAA
1 TCTAACTTTTAATTCAAATAAATATTAA
10189802 CTTAATAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.43, C:0.12, G:0.00, T:0.45
Consensus pattern (30 bp):
TCTAACTTTTAATTCAAATAAATATTAATT
Found at i:10191242 original size:3 final size:3
Alignment explanation
Indices: 10191234--10191287 Score: 108
Period size: 3 Copynumber: 18.0 Consensus size: 3
10191224 TTTTATTCAT
10191234 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
10191282 TTA TTA
1 TTA TTA
10191288 CGTATTTTAT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:10192326 original size:1 final size:1
Alignment explanation
Indices: 10192320--10192376 Score: 51
Period size: 1 Copynumber: 57.0 Consensus size: 1
10192310 TGATGGTAGG
* * ** * * *
10192320 TTTTTTTTTTTTTTTTTCTTTTATTTTTTGGTTTTATTTTTTATTCTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
10192377 AATTGTGATT
Statistics
Matches: 44, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
1 44 1.00
ACGTcount: A:0.05, C:0.04, G:0.04, T:0.88
Consensus pattern (1 bp):
T
Found at i:10192341 original size:13 final size:13
Alignment explanation
Indices: 10192320--10192376 Score: 62
Period size: 13 Copynumber: 4.3 Consensus size: 13
10192310 TGATGGTAGG
10192320 TTTTT-TTTTTTT
1 TTTTTCTTTTTTT
*
10192332 TTTTTCTTTTATT
1 TTTTTCTTTTTTT
**
10192345 TTTTGGTTTTATTT
1 TTTTTCTTTT-TTT
10192359 TTTATTCTTTTTTT
1 TTT-TTCTTTTTTT
10192373 TTTT
1 TTTT
10192377 AATTGTGATT
Statistics
Matches: 36, Mismatches: 6, Indels: 5
0.77 0.13 0.11
Matches are distributed among these distances:
12 5 0.14
13 15 0.42
14 11 0.31
15 5 0.14
ACGTcount: A:0.05, C:0.04, G:0.04, T:0.88
Consensus pattern (13 bp):
TTTTTCTTTTTTT
Found at i:10192366 original size:28 final size:28
Alignment explanation
Indices: 10192323--10192376 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
10192313 TGGTAGGTTT
* *
10192323 TTTTTTTTTTTTTTCTTTTATTTTTTGG
1 TTTTATTTTTTATTCTTTTATTTTTTGG
*
10192351 TTTTATTTTTTATTCTTTTTTTTTTT
1 TTTTATTTTTTATTCTTTTATTTTTT
10192377 AATTGTGATT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.06, C:0.04, G:0.04, T:0.87
Consensus pattern (28 bp):
TTTTATTTTTTATTCTTTTATTTTTTGG
Found at i:10192557 original size:25 final size:25
Alignment explanation
Indices: 10192527--10192574 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
10192517 ATGATTATGA
*
10192527 TTTATT-TAATATTATTGTATGATGT
1 TTTATTATAATATT-TTGCATGATGT
10192552 TTTATTATAATATTTTGCATGAT
1 TTTATTATAATATTTTGCATGAT
10192575 ATCTTCACAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 14 0.67
26 7 0.33
ACGTcount: A:0.29, C:0.02, G:0.10, T:0.58
Consensus pattern (25 bp):
TTTATTATAATATTTTGCATGATGT
Found at i:10193283 original size:21 final size:22
Alignment explanation
Indices: 10193259--10193299 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
10193249 AATGGTTTTA
*
10193259 TTATGCTTA-TTTTTTATGTAT
1 TTATGCATATTTTTTTATGTAT
*
10193280 TTATTCATATTTTTTTATGT
1 TTATGCATATTTTTTTATGT
10193300 GTACTAACCT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 7 0.41
22 10 0.59
ACGTcount: A:0.20, C:0.05, G:0.07, T:0.68
Consensus pattern (22 bp):
TTATGCATATTTTTTTATGTAT
Found at i:10193351 original size:32 final size:32
Alignment explanation
Indices: 10193277--10193351 Score: 105
Period size: 32 Copynumber: 2.3 Consensus size: 32
10193267 ATTTTTTATG
* * *
10193277 TATTTATTCATATTTTTTTATGTGTACTAACC
1 TATTTATTTATAATTTTTTATGTGTACTAACA
* *
10193309 TATTTGTTTATAATTTTTTATGTGTACTAATA
1 TATTTATTTATAATTTTTTATGTGTACTAACA
10193341 TATTTATTTAT
1 TATTTATTTAT
10193352 TTTGTAGATT
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.27, C:0.07, G:0.07, T:0.60
Consensus pattern (32 bp):
TATTTATTTATAATTTTTTATGTGTACTAACA
Found at i:10194634 original size:1 final size:1
Alignment explanation
Indices: 10194628--10194653 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
10194618 TTCGACAAAG
10194628 TTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTT
10194654 AGCAAAGCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:10194967 original size:23 final size:23
Alignment explanation
Indices: 10194936--10194980 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
10194926 AAAAAAAGAA
10194936 AGAAAATAAATAAAT-AAATAAAT
1 AGAAAATAAA-AAATAAAATAAAT
*
10194959 AGAACATAAAAAATAAAATAAA
1 AGAAAATAAAAAATAAAATAAA
10194981 ACAAAACTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 4 0.20
23 16 0.80
ACGTcount: A:0.76, C:0.02, G:0.04, T:0.18
Consensus pattern (23 bp):
AGAAAATAAAAAATAAAATAAAT
Found at i:10194977 original size:19 final size:19
Alignment explanation
Indices: 10194945--10194983 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
10194935 AAGAAAATAA
*
10194945 ATAAATAAATAAATAGAAC
1 ATAAATAAATAAATAAAAC
10194964 ATAAA-AAATAAAATAAAAC
1 ATAAATAAAT-AAATAAAAC
10194983 A
1 A
10194984 AAACTTAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.74, C:0.05, G:0.03, T:0.18
Consensus pattern (19 bp):
ATAAATAAATAAATAAAAC
Found at i:10198861 original size:13 final size:13
Alignment explanation
Indices: 10198843--10198867 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10198833 GGCAGAGTAG
10198843 GATTTATATTTAA
1 GATTTATATTTAA
10198856 GATTTATATTTA
1 GATTTATATTTA
10198868 TTTTATTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.00, G:0.08, T:0.56
Consensus pattern (13 bp):
GATTTATATTTAA
Found at i:10206585 original size:18 final size:19
Alignment explanation
Indices: 10206564--10206600 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
10206554 CACATAAATT
10206564 AAAAAAAAT-AAAAAATAG
1 AAAAAAAATCAAAAAATAG
*
10206582 AAAAAAAATCTAAAAATAG
1 AAAAAAAATCAAAAAATAG
10206601 CTCGGTTGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.78, C:0.03, G:0.05, T:0.14
Consensus pattern (19 bp):
AAAAAAAATCAAAAAATAG
Found at i:10206936 original size:8 final size:8
Alignment explanation
Indices: 10206925--10206963 Score: 51
Period size: 8 Copynumber: 4.9 Consensus size: 8
10206915 ATTAATTTTT
10206925 TATTTATA
1 TATTTATA
10206933 TATTTATA
1 TATTTATA
*
10206941 TAATTATA
1 TATTTATA
* *
10206949 TAATTAAA
1 TATTTATA
10206957 TATTTAT
1 TATTTAT
10206964 TTTAAAAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
8 27 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (8 bp):
TATTTATA
Found at i:10206992 original size:22 final size:21
Alignment explanation
Indices: 10206955--10207004 Score: 86
Period size: 21 Copynumber: 2.5 Consensus size: 21
10206945 TATATAATTA
10206955 AATA-TTTAT-TTTAAAAAAT
1 AATATTTTATATTTAAAAAAT
10206974 AATATTTTATATTTAAAAAAT
1 AATATTTTATATTTAAAAAAT
10206995 AATATTTTAT
1 AATATTTTAT
10207005 TAATTTCGGG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
19 4 0.14
20 5 0.17
21 20 0.69
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (21 bp):
AATATTTTATATTTAAAAAAT
Found at i:10210381 original size:125 final size:125
Alignment explanation
Indices: 10210154--10210382 Score: 327
Period size: 125 Copynumber: 1.8 Consensus size: 125
10210144 CTCCAACTAG
* * * *
10210154 TCTAAAAAAGTTGTTAAATTATCGTTTTGATCAAAGAAAAGGCCATAAAAAGCTTTGGTAATTGG
1 TCTAAAAAAGTTGTTAAATTATCATTTTGATCAAAGAAAAGGCCACAAAAAGCATTAGTAATTGG
* * *
10210219 AGATATAATTTCATTCTCTTTTTTGTTTAGGTTTATTTCGGCAGCCATTAATCTAATTAT
66 AGATATAATTTCATTCTCCTTTTTGTTCAGGTCTATTTCGGCAGCCATTAATCTAATTAT
* * *
10210279 TCTAAAAAAGTTGTTGAATTATCATTTTGATCAAAGTGAAA-GCCACAAGAAGCATTAGTAATTG
1 TCTAAAAAAGTTGTTAAATTATCATTTTGATCAAAG-AAAAGGCCACAAAAAGCATTAGTAATTG
*
10210343 GAGATATAATTTCATTTTCCCTTTTT-TTCAGGTCTATTTC
65 GAGATATAATTTCATTCT-CCTTTTTGTTCAGGTCTATTTC
10210383 AACAACCATT
Statistics
Matches: 91, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
125 82 0.90
126 9 0.10
ACGTcount: A:0.33, C:0.12, G:0.15, T:0.40
Consensus pattern (125 bp):
TCTAAAAAAGTTGTTAAATTATCATTTTGATCAAAGAAAAGGCCACAAAAAGCATTAGTAATTGG
AGATATAATTTCATTCTCCTTTTTGTTCAGGTCTATTTCGGCAGCCATTAATCTAATTAT
Found at i:10212673 original size:54 final size:53
Alignment explanation
Indices: 10212500--10212692 Score: 183
Period size: 54 Copynumber: 3.5 Consensus size: 53
10212490 TATCTAATTA
* * * *
10212500 TTCCACAATTTGGGCCAAATTAGAAATA-TTTTCTTGTTTTAAATTTTTAAAGT
1 TTCCACCATTTGGGCCAATTTAGAAATATTTTTCTTATTTTAAATTTCTAAA-T
* * * *
10212553 TTCCACCATTTAGGCCTATTTAGAAAATTATTTTATTTTATTTTTTAGATTTCTAAATT
1 TTCCACCATTTGGGCCAATTTAG-AAA-TATTTT-TCTTA--TTTTAAATTTCTAAA-T
* * *
10212612 TTTCACCATTTGGGTCAATTTAGAAATATTTTTCTT-TTTTGGAATTTCTAAAT
1 TTCCACCATTTGGGCCAATTTAGAAATATTTTTCTTATTTT-AAATTTCTAAAT
*
10212665 TCTCCACCATTTGGGCCTATTTAGAAAT
1 T-TCCACCATTTGGGCCAATTTAGAAAT
10212693 TCTTTTTTTT
Statistics
Matches: 113, Mismatches: 19, Indels: 15
0.77 0.13 0.10
Matches are distributed among these distances:
53 25 0.22
54 35 0.31
55 2 0.02
56 6 0.05
57 9 0.08
58 3 0.03
59 33 0.29
ACGTcount: A:0.28, C:0.13, G:0.10, T:0.48
Consensus pattern (53 bp):
TTCCACCATTTGGGCCAATTTAGAAATATTTTTCTTATTTTAAATTTCTAAAT
Found at i:10212915 original size:20 final size:20
Alignment explanation
Indices: 10212892--10212929 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
10212882 TCAACCAAAA
*
10212892 TTTTATTTTTTTAGTTTTTT
1 TTTTAATTTTTTAGTTTTTT
10212912 TTTTAATTTTTTAGTTTT
1 TTTTAATTTTTTAGTTTT
10212930 GAAAATAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.13, C:0.00, G:0.05, T:0.82
Consensus pattern (20 bp):
TTTTAATTTTTTAGTTTTTT
Found at i:10213148 original size:4 final size:4
Alignment explanation
Indices: 10213139--10213173 Score: 52
Period size: 4 Copynumber: 8.8 Consensus size: 4
10213129 ATACTAAAAC
* *
10213139 AAAT AAAT AAAT AAAC ACAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
10213174 GTAACAAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.74, C:0.06, G:0.00, T:0.20
Consensus pattern (4 bp):
AAAT
Found at i:10213154 original size:16 final size:16
Alignment explanation
Indices: 10213135--10213169 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
10213125 AAAAATACTA
10213135 AAACAAATAAATAAAT
1 AAACAAATAAATAAAT
*
10213151 AAACACATAAATAAAT
1 AAACAAATAAATAAAT
10213167 AAA
1 AAA
10213170 TAAAGTAACA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.74, C:0.09, G:0.00, T:0.17
Consensus pattern (16 bp):
AAACAAATAAATAAAT
Found at i:10214350 original size:44 final size:43
Alignment explanation
Indices: 10214290--10214565 Score: 311
Period size: 44 Copynumber: 6.3 Consensus size: 43
10214280 GGTTCATACT
* * *
10214290 TTTGGAAAATAAACAAAGCTCCTCTAAACAGAGGCTCAATGAC
1 TTTGAAAAATAAACAAAGCTCCTCTAAACAAAGGCTCAACGAC
* * *
10214333 TTTGAAAAATTAAACAAAGCTCCTCTAATCAGAGGCTCAACAAC
1 TTTGAAAAA-TAAACAAAGCTCCTCTAAACAAAGGCTCAACGAC
*
10214377 TTTGAAAAAGTAAACAAAGCTCCTCTAATA-AAAAGCTCAACGAC
1 TTTGAAAAA-TAAACAAAGCTCCTCTAA-ACAAAGGCTCAACGAC
* * *
10214421 TTTTTGAAAAATAAATAAAGCTCCTCTAATCAAAGGCCCAACGAC
1 --TTTGAAAAATAAACAAAGCTCCTCTAAACAAAGGCTCAACGAC
* * *
10214466 TTTGAAAAATAAACAAAGCTCCTTTAAACAAAGGCTCAATGGC
1 TTTGAAAAATAAACAAAGCTCCTCTAAACAAAGGCTCAACGAC
** ** * *
10214509 TTTTGAAAAATAAACAAAGCTTTTCTAATTAGAGGCTCAACAAC
1 -TTTGAAAAATAAACAAAGCTCCTCTAAACAAAGGCTCAACGAC
*
10214553 TTTAAAAAATAAA
1 TTTGAAAAATAAA
10214566 TAGGTTATTC
Statistics
Matches: 198, Mismatches: 29, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
43 57 0.29
44 103 0.52
45 29 0.15
46 9 0.05
ACGTcount: A:0.45, C:0.19, G:0.12, T:0.24
Consensus pattern (43 bp):
TTTGAAAAATAAACAAAGCTCCTCTAAACAAAGGCTCAACGAC
Found at i:10214536 original size:132 final size:132
Alignment explanation
Indices: 10214287--10214567 Score: 352
Period size: 132 Copynumber: 2.1 Consensus size: 132
10214277 AGAGGTTCAT
* * * * *
10214287 ACTTTTGGAAAATAAACAAAGCTCCTCTAAACAGAGGCTCAATGACTTTGAAAAATTAAACAAAG
1 ACTTTTGAAAAATAAATAAAGCTCCTCTAAACAAAGGCCCAACGACTTTGAAAAATTAAACAAAG
* *
10214352 CTCCTCTAATCAGAGGCTCAACAACTTTGAAAAAGTAAACAAAGCTCCTCTAATAAAAAGCTCAA
66 CTCCTCTAAACAAAGGCTCAACAACTTTGAAAAAGTAAACAAAGCTCCTCTAATAAAAAGCTCAA
*
10214417 CG
131 CA
*
10214419 ACTTTTTGAAAAATAAATAAAGCTCCTCTAATCAAAGGCCCAACGACTTTGAAAAA-TAAACAAA
1 AC-TTTTGAAAAATAAATAAAGCTCCTCTAAACAAAGGCCCAACGACTTTGAAAAATTAAACAAA
* *** ** * * *
10214483 GCTCCTTTAAACAAAGGCTCAATGGCTTTTGAAAAA-TAAACAAAGCTTTTCTAATTAGAGGCTC
65 GCTCCTCTAAACAAAGGCTCAACAAC-TTTGAAAAAGTAAACAAAGCTCCTCTAATAAAAAGCTC
10214547 AACA
129 AACA
*
10214551 AC-TTTAAAAAATAAATA
1 ACTTTTGAAAAATAAATA
10214568 GGTTATTCGA
Statistics
Matches: 128, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
130 14 0.11
132 58 0.45
133 56 0.44
ACGTcount: A:0.45, C:0.19, G:0.12, T:0.24
Consensus pattern (132 bp):
ACTTTTGAAAAATAAATAAAGCTCCTCTAAACAAAGGCCCAACGACTTTGAAAAATTAAACAAAG
CTCCTCTAAACAAAGGCTCAACAACTTTGAAAAAGTAAACAAAGCTCCTCTAATAAAAAGCTCAA
CA
Found at i:10226037 original size:111 final size:111
Alignment explanation
Indices: 10225918--10226118 Score: 273
Period size: 112 Copynumber: 1.8 Consensus size: 111
10225908 TATTCCACAA
* * *
10225918 TTTGGTCAAATTAAAAATATTTT-CTTGTTTTG-AATTTTTAAATTTTCTACCATTTGGACCTAT
1 TTTGGTCAAATTAAAAATATTTTCCTT-TTTCGAAATTTCTAAATTTTCCACCATTTGGACCTAT
*
10225981 TTAGAAAATTTTT-TTATTTTATTTTTGGATTTCTAAATTTTTCACTAT
65 TTAAAAAATTTTTCTT-TTTT-TTTTTGGATTTCTAAATTTTTCACTAT
* * * **
10226029 TTTGGTCAATTTAGAAATATTTTCCTTTTTCGAAATTTCTAAATTTTCCATCATTTGGGTCTATT
1 TTTGGTCAAATTAAAAATATTTTCCTTTTTCGAAATTTCTAAATTTTCCACCATTTGGACCTATT
10226094 TAAAAAATTTTTCTTTTTTTTTTTG
66 TAAAAAATTTTTCTTTTTTTTTTTG
10226119 TTTTCGGAAA
Statistics
Matches: 78, Mismatches: 9, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
111 31 0.40
112 45 0.58
113 2 0.03
ACGTcount: A:0.26, C:0.10, G:0.08, T:0.55
Consensus pattern (111 bp):
TTTGGTCAAATTAAAAATATTTTCCTTTTTCGAAATTTCTAAATTTTCCACCATTTGGACCTATT
TAAAAAATTTTTCTTTTTTTTTTTGGATTTCTAAATTTTTCACTAT
Found at i:10226112 original size:54 final size:54
Alignment explanation
Indices: 10226009--10226111 Score: 138
Period size: 54 Copynumber: 1.9 Consensus size: 54
10225999 TTATTTTTGG
* * *
10226009 ATTTCTAAATTTTTCACTATTTTGGTCAATTTAGAAATATTTTCCTTTTTCGAA
1 ATTTCTAAATTTTCCACTATTTGGGTCAATTTAAAAATATTTTCCTTTTTCGAA
* *
10226063 ATTTCTAAATTTTCCA-TCATTTGGGTCTATTTAAAAA-ATTTTTCTTTTT
1 ATTTCTAAATTTTCCACT-ATTTGGGTCAATTTAAAAATATTTTCCTTTTT
10226112 TTTTTTGTTT
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
53 12 0.28
54 31 0.72
ACGTcount: A:0.27, C:0.13, G:0.07, T:0.53
Consensus pattern (54 bp):
ATTTCTAAATTTTCCACTATTTGGGTCAATTTAAAAATATTTTCCTTTTTCGAA
Found at i:10226311 original size:18 final size:19
Alignment explanation
Indices: 10226290--10226325 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
10226280 TTCAACCAAA
10226290 TTTT-ATTTTTTAGTTTTT
1 TTTTAATTTTTTAGTTTTT
*
10226308 TTTTAATTTTTTTGTTTT
1 TTTTAATTTTTTAGTTTT
10226326 GAAAATAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.11, C:0.00, G:0.06, T:0.83
Consensus pattern (19 bp):
TTTTAATTTTTTAGTTTTT
Found at i:10227639 original size:81 final size:81
Alignment explanation
Indices: 10227525--10227687 Score: 265
Period size: 81 Copynumber: 2.0 Consensus size: 81
10227515 TCATATTTTT
*
10227525 CACGACATCTTACTTTTTCTTTTTGTTTGTCAGCTTTTATTTACACACCATCTTCCTCTATAATT
1 CACGACATCTTACTTTTTCTTTTTGTTTGTCAGCTTTTATTTACACAACATCTTCCTCTATAATT
10227590 TCTTTGTACTTTACTA
66 TCTTTGTACTTTACTA
* * *
10227606 CACGACATCTTATTTTTTCTTTTTGCTTT-TCAGCTTTTATTTACACAACATTTTGCTCTATAAT
1 CACGACATCTTACTTTTTCTTTTTG-TTTGTCAGCTTTTATTTACACAACATCTTCCTCTATAAT
*
10227670 TTCTTTGTGCTTTACTA
65 TTCTTTGTACTTTACTA
10227687 C
1 C
10227688 TTTAGCTCTT
Statistics
Matches: 76, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
81 73 0.96
82 3 0.04
ACGTcount: A:0.20, C:0.22, G:0.07, T:0.52
Consensus pattern (81 bp):
CACGACATCTTACTTTTTCTTTTTGTTTGTCAGCTTTTATTTACACAACATCTTCCTCTATAATT
TCTTTGTACTTTACTA
Done.