Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19866354
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 74000 characters in sequence are not A, C, G, or T
File 44 of 100
Found at i:11224910 original size:10 final size:10
Alignment explanation
Indices: 11224896--11224936 Score: 55
Period size: 10 Copynumber: 4.0 Consensus size: 10
11224886 ATAGCATTAG
*
11224896 TTAAATAATG
1 TTAAATAATA
*
11224906 TTAAATATTA
1 TTAAATAATA
11224916 TTAAATTAATA
1 TTAAA-TAATA
11224927 TTAAATAATA
1 TTAAATAATA
11224937 AAACACTATT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
10 18 0.67
11 9 0.33
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (10 bp):
TTAAATAATA
Found at i:11224925 original size:21 final size:21
Alignment explanation
Indices: 11224818--11224933 Score: 63
Period size: 21 Copynumber: 5.8 Consensus size: 21
11224808 TAATGTAATA
*
11224818 TTAAA-AATTTTAAA-ATTA-
1 TTAAATAATATTAAATATTAG
*
11224836 TTAAATTAATTTTAAATATT-G
1 TTAAA-TAATATTAAATATTAG
11224857 --AAATAATATTAAA-A-TA-
1 TTAAATAATATTAAATATTAG
* * **
11224873 ATAATAAAATATTATAGCATTAG
1 TTAA-ATAATATTA-AATATTAG
*
11224896 TTAAATAATGTTAAATATTA-
1 TTAAATAATATTAAATATTAG
11224916 TTAAATTAATATTAAATA
1 TTAAA-TAATATTAAATA
11224934 ATAAAACACT
Statistics
Matches: 76, Mismatches: 9, Indels: 23
0.70 0.08 0.21
Matches are distributed among these distances:
16 1 0.01
17 1 0.01
18 16 0.21
19 11 0.14
20 15 0.20
21 20 0.26
22 9 0.12
23 3 0.04
ACGTcount: A:0.53, C:0.01, G:0.03, T:0.42
Consensus pattern (21 bp):
TTAAATAATATTAAATATTAG
Found at i:11224965 original size:17 final size:17
Alignment explanation
Indices: 11224943--11224983 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
11224933 AATAAAACAC
* *
11224943 TATTAAAATATATGCAA
1 TATTAAAAAATATGAAA
*
11224960 TATTAAAAAATATTAAA
1 TATTAAAAAATATGAAA
11224977 TATTAAA
1 TATTAAA
11224984 TATTAAATAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (17 bp):
TATTAAAAAATATGAAA
Found at i:11224977 original size:7 final size:7
Alignment explanation
Indices: 11224967--11224994 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
11224957 CAATATTAAA
11224967 AAATATT
1 AAATATT
11224974 AAATATT
1 AAATATT
11224981 AAATATT
1 AAATATT
11224988 AAATATT
1 AAATATT
11224995 GCTAAATTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (7 bp):
AAATATT
Found at i:11225144 original size:11 final size:11
Alignment explanation
Indices: 11225128--11225177 Score: 59
Period size: 11 Copynumber: 4.6 Consensus size: 11
11225118 GTTAATATTT
11225128 TTATTAAAATA
1 TTATTAAAATA
11225139 TTATTAAAATA
1 TTATTAAAATA
*
11225150 -AATT-AAATA
1 TTATTAAAATA
*
11225159 CTATTAAAATA
1 TTATTAAAATA
11225170 TTTATTAA
1 -TTATTAA
11225178 TTTAATGTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
9 5 0.15
10 6 0.18
11 16 0.48
12 6 0.18
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (11 bp):
TTATTAAAATA
Found at i:11225218 original size:21 final size:18
Alignment explanation
Indices: 11225194--11225239 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 18
11225184 GTTTAATAAT
11225194 TAATATTAAAGTATTAGTAAA
1 TAATATTAAA-TATTA--AAA
*
11225215 TAATATTATATATTAAAA
1 TAATATTAAATATTAAAA
11225233 TAATATT
1 TAATATT
11225240 TAGTATAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
18 10 0.42
20 5 0.21
21 9 0.38
ACGTcount: A:0.52, C:0.00, G:0.04, T:0.43
Consensus pattern (18 bp):
TAATATTAAATATTAAAA
Found at i:11225248 original size:17 final size:18
Alignment explanation
Indices: 11225212--11225251 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
11225202 AAGTATTAGT
11225212 AAATAATATTATATATTA
1 AAATAATATTATATATTA
11225230 AAATAATATT-TAGTA-TA
1 AAATAATATTATA-TATTA
11225247 AAATA
1 AAATA
11225252 TTACAACATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.43
18 12 0.57
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (18 bp):
AAATAATATTATATATTA
Found at i:11225285 original size:21 final size:21
Alignment explanation
Indices: 11225259--11225419 Score: 157
Period size: 21 Copynumber: 7.7 Consensus size: 21
11225249 ATATTACAAC
**
11225259 ATATTTAATATTATTTTATTA
1 ATATTTAATATTATTAAATTA
* *
11225280 ATATTTAGTATTATAAAATTTA
1 ATATTTAATATTATTAAA-TTA
*
11225302 ATATTT-ATCATGATTAAATTA
1 ATATTTAAT-ATTATTAAATTA
* *
11225323 ATATTTAATATTGTTCAA-TA
1 ATATTTAATATTATTAAATTA
11225343 ATATTTAATATTATTAAA-TA
1 ATATTTAATATTATTAAATTA
** *
11225363 ATAGCTAATAATATTAAATTA
1 ATATTTAATATTATTAAATTA
* *
11225384 ATAGTGAATATTATTAAATTA
1 ATATTTAATATTATTAAATTA
* *
11225405 ATATTGAATAATATT
1 ATATTTAATATTATT
11225420 TCATATTAAA
Statistics
Matches: 116, Mismatches: 20, Indels: 8
0.81 0.14 0.06
Matches are distributed among these distances:
20 35 0.30
21 63 0.54
22 18 0.16
ACGTcount: A:0.45, C:0.02, G:0.04, T:0.48
Consensus pattern (21 bp):
ATATTTAATATTATTAAATTA
Found at i:11225346 original size:20 final size:20
Alignment explanation
Indices: 11225194--11225448 Score: 130
Period size: 21 Copynumber: 12.3 Consensus size: 20
11225184 GTTTAATAAT
* *
11225194 TAATATTAAAGTATTAGTAAA
1 TAATATTTAA-TATTATTAAA
11225215 TAATA-TT-ATA-TATTAAAA
1 TAATATTTAATATTATT-AAA
*
11225233 TAATATTTAGTATAAAATATTACAA
1 TAATATTTA--AT--ATTATTA-AA
* * *
11225258 -CATATTTAATATTATTTTAT
1 TAATATTTAATATTA-TTAAA
* *
11225278 TAATATTTAGTATTATAAAA
1 TAATATTTAATATTATTAAA
*
11225298 TTTAATATTT-ATCATGATTAAA
1 --TAATATTTAAT-ATTATTAAA
* *
11225320 TTAATATTTAATATTGTTCAA
1 -TAATATTTAATATTATTAAA
11225341 TAATATTTAATATTATTAAA
1 TAATATTTAATATTATTAAA
** *
11225361 TAATAGCTAATAATATTAAA
1 TAATATTTAATATTATTAAA
* *
11225381 TTAATAGTGAATATTATTAAA
1 -TAATATTTAATATTATTAAA
* *
11225402 TTAATATTGAATAATATT---
1 -TAATATTTAATATTATTAAA
* *
11225420 TCATATTAAAATATTATTTAAA
1 TAATATT-TAATATTA-TTAAA
11225442 TAATATT
1 TAATATT
11225449 AAGTTAGCCT
Statistics
Matches: 182, Mismatches: 31, Indels: 41
0.72 0.12 0.16
Matches are distributed among these distances:
17 9 0.05
18 16 0.09
19 5 0.03
20 42 0.23
21 68 0.37
22 27 0.15
24 9 0.05
25 6 0.03
ACGTcount: A:0.47, C:0.02, G:0.04, T:0.46
Consensus pattern (20 bp):
TAATATTTAATATTATTAAA
Found at i:11225352 original size:10 final size:10
Alignment explanation
Indices: 11225321--11225420 Score: 65
Period size: 10 Copynumber: 9.8 Consensus size: 10
11225311 ATGATTAAAT
11225321 TAATATTTAA
1 TAATATTTAA
* * *
11225331 TATTGTTCAA
1 TAATATTTAA
11225341 TAATATTTAA
1 TAATATTTAA
* *
11225351 TATTATTAAA
1 TAATATTTAA
**
11225361 TAATAGCTAA
1 TAATATTTAA
*
11225371 TAATATTAAA
1 TAATATTTAA
* *
11225381 TTAATAGTGAA
1 -TAATATTTAA
* *
11225392 TATTATTAAA
1 TAATATTTAA
*
11225402 TTAATATTGAA
1 -TAATATTTAA
11225413 TAATATTT
1 TAATATTT
11225421 CATATTAAAA
Statistics
Matches: 65, Mismatches: 23, Indels: 4
0.71 0.25 0.04
Matches are distributed among these distances:
10 49 0.75
11 16 0.25
ACGTcount: A:0.47, C:0.02, G:0.05, T:0.46
Consensus pattern (10 bp):
TAATATTTAA
Found at i:11225359 original size:41 final size:42
Alignment explanation
Indices: 11225259--11225419 Score: 157
Period size: 41 Copynumber: 3.9 Consensus size: 42
11225249 ATATTACAAC
** * *
11225259 ATATTTAATATTATTTTATTAATATTTAGTATTATAAAATTTA
1 ATATTTAATATTATTAAATTAATATTTAATATTATTAAA-TTA
* * *
11225302 ATATTT-ATCATGATTAAATTAATATTTAATATTGTTCAA-TA
1 ATATTTAAT-ATTATTAAATTAATATTTAATATTATTAAATTA
** *
11225343 ATATTTAATATTATTAAA-TAATAGCTAATAATATTAAATTA
1 ATATTTAATATTATTAAATTAATATTTAATATTATTAAATTA
* * * *
11225384 ATAGTGAATATTATTAAATTAATATTGAATAATATT
1 ATATTTAATATTATTAAATTAATATTTAATATTATT
11225420 TCATATTAAA
Statistics
Matches: 96, Mismatches: 18, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
40 15 0.16
41 34 0.35
42 18 0.19
43 29 0.30
ACGTcount: A:0.45, C:0.02, G:0.04, T:0.48
Consensus pattern (42 bp):
ATATTTAATATTATTAAATTAATATTTAATATTATTAAATTA
Found at i:11225614 original size:17 final size:16
Alignment explanation
Indices: 11225592--11225626 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
11225582 TAAATTGATG
11225592 AACTATAAGCAAATATA
1 AACTATAAGCAAA-ATA
*
11225609 AACTATAATCAAAATA
1 AACTATAAGCAAAATA
11225625 AA
1 AA
11225627 AAAATAGGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.63, C:0.11, G:0.03, T:0.23
Consensus pattern (16 bp):
AACTATAAGCAAAATA
Found at i:11227261 original size:27 final size:27
Alignment explanation
Indices: 11227225--11227333 Score: 119
Period size: 28 Copynumber: 3.9 Consensus size: 27
11227215 AATATTAAGG
11227225 AATTTTTAAATTAATATTTAATATAAA
1 AATTTTTAAATTAATATTTAATATAAA
* *
11227252 AATTTTTAAAATAATATTTTATATGAAA
1 AATTTTTAAATTAATATTTAATAT-AAA
* * *
11227280 TACTATTAAATTAATATTTAATATTAAA
1 AATTTTTAAATTAATATTTAATA-TAAA
* *
11227308 ATATTATTAAAATTAATATATAATAT
1 A-ATT-TTTAAATTAATATTTAATAT
11227334 TGAATACTAA
Statistics
Matches: 66, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
27 22 0.33
28 24 0.36
29 4 0.06
30 16 0.24
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.47
Consensus pattern (27 bp):
AATTTTTAAATTAATATTTAATATAAA
Found at i:11227315 original size:11 final size:11
Alignment explanation
Indices: 11227301--11227377 Score: 57
Period size: 11 Copynumber: 6.6 Consensus size: 11
11227291 TAATATTTAA
11227301 TATTAAAATAT
1 TATTAAAATAT
11227312 TATTAAAAT-T
1 TATTAAAATAT
* *
11227322 AATATATAATAT
1 TAT-TAAAATAT
*
11227334 TGAATACTAAAATGT
1 T--AT--TAAAATAT
*
11227349 TATTAAAATAA
1 TATTAAAATAT
*
11227360 TATTTAAATAT
1 TATTAAAATAT
11227371 TATTAAA
1 TATTAAA
11227378 TTGAATATTT
Statistics
Matches: 50, Mismatches: 11, Indels: 10
0.70 0.15 0.14
Matches are distributed among these distances:
10 3 0.06
11 35 0.70
12 1 0.02
13 2 0.04
14 2 0.04
15 7 0.14
ACGTcount: A:0.53, C:0.01, G:0.03, T:0.43
Consensus pattern (11 bp):
TATTAAAATAT
Found at i:11227322 original size:17 final size:17
Alignment explanation
Indices: 11227297--11227357 Score: 50
Period size: 17 Copynumber: 3.4 Consensus size: 17
11227287 AAATTAATAT
*
11227297 TTAATATTAAAATATTA
1 TTAAAATTAAAATATTA
*
11227314 TTAAAATTAATATATAATA
1 TTAAAATTAA-A-ATATTA
* * *
11227333 TTGAATACTAAAATGTTA
1 TT-AAAATTAAAATATTA
11227351 TTAAAAT
1 TTAAAAT
11227358 AATATTTAAA
Statistics
Matches: 33, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
17 12 0.36
18 7 0.21
19 8 0.24
20 6 0.18
ACGTcount: A:0.52, C:0.02, G:0.03, T:0.43
Consensus pattern (17 bp):
TTAAAATTAAAATATTA
Found at i:11227370 original size:37 final size:37
Alignment explanation
Indices: 11227284--11227371 Score: 110
Period size: 37 Copynumber: 2.4 Consensus size: 37
11227274 ATGAAATACT
* *
11227284 ATTAA-AT-TAATATTTAATATTAAAATATTATTAAA
1 ATTAATATATAATATTGAATACTAAAATATTATTAAA
*
11227319 ATTAATATATAATATTGAATACTAAAATGTTATTAAA
1 ATTAATATATAATATTGAATACTAAAATATTATTAAA
*
11227356 A-TAATATTTAAATATT
1 ATTAATATAT-AATATT
11227372 ATTAAATTGA
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
35 5 0.11
36 9 0.20
37 32 0.70
ACGTcount: A:0.52, C:0.01, G:0.02, T:0.44
Consensus pattern (37 bp):
ATTAATATATAATATTGAATACTAAAATATTATTAAA
Found at i:11227426 original size:20 final size:21
Alignment explanation
Indices: 11227348--11227486 Score: 158
Period size: 20 Copynumber: 6.7 Consensus size: 21
11227338 TACTAAAATG
*
11227348 TTATTAAAATAATATTTAAATA
1 TTATTAAATTAATATTT-AATA
*
11227370 TTATTAAATTGAATATTTACTA
1 TTATTAAATT-AATATTTAATA
*
11227392 TGATTAAATTAATATTTAATA
1 TTATTAAATTAATATTTAATA
* *
11227413 TTGTTCAA-TAATATTTAATA
1 TTATTAAATTAATATTTAATA
* *
11227433 TTATTAAA-TAGTAGTTAATA
1 TTATTAAATTAATATTTAATA
*
11227453 TTCTTAAATTAATA-TTAATA
1 TTATTAAATTAATATTTAATA
*
11227473 ATATTAAATTAATA
1 TTATTAAATTAATA
11227487 CTGACTATGT
Statistics
Matches: 100, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
20 53 0.53
21 19 0.19
22 21 0.21
23 7 0.07
ACGTcount: A:0.47, C:0.02, G:0.04, T:0.47
Consensus pattern (21 bp):
TTATTAAATTAATATTTAATA
Found at i:11227931 original size:30 final size:29
Alignment explanation
Indices: 11227853--11227986 Score: 117
Period size: 30 Copynumber: 4.5 Consensus size: 29
11227843 TATTTTACTT
*
11227853 AAATAAATTTTTATATTTTTATTT-TATCC
1 AAATAAATTTTTA-ATTTTAATTTATATCC
* ***
11227882 AAATGAACCCTTACATTTTAATTTATATCC
1 AAATAAATTTTTA-ATTTTAATTTATATCC
* * **
11227912 AAATAATTTTTTAACTTTTAATTTGTATTT
1 AAATAAATTTTTAA-TTTTAATTTATATCC
**
11227942 AAATAAATTTTTAATCTTTAATTTATATAT
1 AAATAAATTTTTAAT-TTTAATTTATATCC
*
11227972 AAATAAATATTTAAT
1 AAATAAATTTTTAAT
11227987 ATCAAATCAA
Statistics
Matches: 84, Mismatches: 18, Indels: 5
0.79 0.17 0.05
Matches are distributed among these distances:
29 20 0.24
30 64 0.76
ACGTcount: A:0.40, C:0.07, G:0.01, T:0.51
Consensus pattern (29 bp):
AAATAAATTTTTAATTTTAATTTATATCC
Found at i:11229003 original size:2 final size:2
Alignment explanation
Indices: 11228998--11229037 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
11228988 TCTCAAAAGC
11228998 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
11229038 CCGAATCTGA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:11233594 original size:2 final size:2
Alignment explanation
Indices: 11233589--11233621 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
11233579 AAAGAGGGGG
11233589 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
11233622 GAAACAGCCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:11233976 original size:7 final size:7
Alignment explanation
Indices: 11233964--11233992 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
11233954 AATAGACTAC
11233964 AATTTAA
1 AATTTAA
11233971 AATTTAA
1 AATTTAA
11233978 AATTTAA
1 AATTTAA
11233985 AATTTAA
1 AATTTAA
11233992 A
1 A
11233993 CTTCATATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (7 bp):
AATTTAA
Found at i:11238631 original size:14 final size:14
Alignment explanation
Indices: 11238612--11238641 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
11238602 TTAAATAGAC
*
11238612 TAAAATTTAAATTT
1 TAAAATTTAAACTT
11238626 TAAAATTTAAACTT
1 TAAAATTTAAACTT
11238640 TA
1 TA
11238642 TATCTACCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (14 bp):
TAAAATTTAAACTT
Found at i:11243232 original size:9 final size:9
Alignment explanation
Indices: 11243218--11243249 Score: 55
Period size: 9 Copynumber: 3.4 Consensus size: 9
11243208 CATATTAATT
11243218 ATTTTTAAA
1 ATTTTTAAA
11243227 ATTTTTTAAA
1 A-TTTTTAAA
11243237 ATTTTTAAA
1 ATTTTTAAA
11243246 ATTT
1 ATTT
11243250 AAGAATTGAG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 13 0.59
10 9 0.41
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (9 bp):
ATTTTTAAA
Found at i:11243232 original size:10 final size:10
Alignment explanation
Indices: 11243219--11243249 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
11243209 ATATTAATTA
11243219 TTTTTAAAAT
1 TTTTTAAAAT
11243229 TTTTTAAAA-
1 TTTTTAAAAT
11243238 TTTTTAAAAT
1 TTTTTAAAAT
11243248 TT
1 TT
11243250 AAGAATTGAG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 9 0.45
10 11 0.55
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (10 bp):
TTTTTAAAAT
Found at i:11245371 original size:157 final size:157
Alignment explanation
Indices: 11245085--11245398 Score: 628
Period size: 157 Copynumber: 2.0 Consensus size: 157
11245075 AACTTCACGA
11245085 AAGCCTTCATTGTTGGTAGTTCTTAGCTAGATAGTTTTTCCAATGTCTTAATGAACTAAAGGTAT
1 AAGCCTTCATTGTTGGTAGTTCTTAGCTAGATAGTTTTTCCAATGTCTTAATGAACTAAAGGTAT
11245150 TTTTTGCTACTATTAATTTAGTCTCTCTTTTTATTAGTCTATTCTTGTTATAGGAACTAACATGC
66 TTTTTGCTACTATTAATTTAGTCTCTCTTTTTATTAGTCTATTCTTGTTATAGGAACTAACATGC
11245215 TTTTTCTGATTATAGGTACTATTTCAC
131 TTTTTCTGATTATAGGTACTATTTCAC
11245242 AAGCCTTCATTGTTGGTAGTTCTTAGCTAGATAGTTTTTCCAATGTCTTAATGAACTAAAGGTAT
1 AAGCCTTCATTGTTGGTAGTTCTTAGCTAGATAGTTTTTCCAATGTCTTAATGAACTAAAGGTAT
11245307 TTTTTGCTACTATTAATTTAGTCTCTCTTTTTATTAGTCTATTCTTGTTATAGGAACTAACATGC
66 TTTTTGCTACTATTAATTTAGTCTCTCTTTTTATTAGTCTATTCTTGTTATAGGAACTAACATGC
11245372 TTTTTCTGATTATAGGTACTATTTCAC
131 TTTTTCTGATTATAGGTACTATTTCAC
11245399 TAAACATTCT
Statistics
Matches: 157, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
157 157 1.00
ACGTcount: A:0.25, C:0.15, G:0.14, T:0.46
Consensus pattern (157 bp):
AAGCCTTCATTGTTGGTAGTTCTTAGCTAGATAGTTTTTCCAATGTCTTAATGAACTAAAGGTAT
TTTTTGCTACTATTAATTTAGTCTCTCTTTTTATTAGTCTATTCTTGTTATAGGAACTAACATGC
TTTTTCTGATTATAGGTACTATTTCAC
Found at i:11246016 original size:19 final size:20
Alignment explanation
Indices: 11245976--11246026 Score: 52
Period size: 19 Copynumber: 2.6 Consensus size: 20
11245966 AAGAAAACTT
*
11245976 TATTTTTAT-TATGATTTGA
1 TATTTTAATATATGATTTGA
*
11245995 TATTTTAATATATTATTT-A
1 TATTTTAATATATGATTTGA
*
11246014 TATGTTACATATA
1 TATTTTA-ATATA
11246027 GTTTGAATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 15 0.56
20 12 0.44
ACGTcount: A:0.33, C:0.02, G:0.06, T:0.59
Consensus pattern (20 bp):
TATTTTAATATATGATTTGA
Found at i:11246025 original size:20 final size:20
Alignment explanation
Indices: 11245989--11246026 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
11245979 TTTTATTATG
*
11245989 ATTTGATATTTTAATATATT
1 ATTTGATATGTTAATATATT
11246009 ATTT-ATATGTTACATATA
1 ATTTGATATGTTA-ATATA
11246027 GTTTGAATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 7 0.44
20 9 0.56
ACGTcount: A:0.37, C:0.03, G:0.05, T:0.55
Consensus pattern (20 bp):
ATTTGATATGTTAATATATT
Found at i:11247220 original size:51 final size:52
Alignment explanation
Indices: 11247115--11247256 Score: 157
Period size: 51 Copynumber: 2.8 Consensus size: 52
11247105 ATTAAAACTG
* * **
11247115 ATTTTAGAATTATTCTGAC-TCTTGATGAAATCC--CAAAATTTTATTAACTG
1 ATTTTAGAATTATTCTGACTTTTTGATGAAATCCTAAAAAATTTTA-TAACAA
*
11247165 ATTTTAGCATTATTCTGACTTTTTGATGAAATCCTAAAAAATTTTA-AACAA
1 ATTTTAGAATTATTCTGACTTTTTGATGAAATCCTAAAAAATTTTATAACAA
* * ** *
11247216 ATTTTAGAATCATCCCAACTTTTTGATGAGATCCTAAAAAA
1 ATTTTAGAATTATTCTGACTTTTTGATGAAATCCTAAAAAA
11247257 AAAAAAATTT
Statistics
Matches: 78, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
50 18 0.23
51 51 0.65
53 9 0.12
ACGTcount: A:0.37, C:0.14, G:0.09, T:0.39
Consensus pattern (52 bp):
ATTTTAGAATTATTCTGACTTTTTGATGAAATCCTAAAAAATTTTATAACAA
Found at i:11248459 original size:11 final size:10
Alignment explanation
Indices: 11248427--11248461 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
11248417 TTTGGCAACC
11248427 AAAAAATTTT
1 AAAAAATTTT
*
11248437 AAAAAAGTTT
1 AAAAAATTTT
11248447 AAAAAATTCTT
1 AAAAAATT-TT
11248458 AAAA
1 AAAA
11248462 CAATCCTTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 16 0.73
11 6 0.27
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (10 bp):
AAAAAATTTT
Found at i:11249105 original size:4 final size:4
Alignment explanation
Indices: 11249096--11249124 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
11249086 TTTTTGTAAG
11249096 ATTA ATTA ATTA ATTA ATTA ATT- ATTA AT
1 ATTA ATTA ATTA ATTA ATTA ATTA ATTA AT
11249125 AATAAAAATG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
3 3 0.12
4 21 0.88
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (4 bp):
ATTA
Found at i:11249603 original size:44 final size:43
Alignment explanation
Indices: 11249464--11249628 Score: 163
Period size: 43 Copynumber: 3.8 Consensus size: 43
11249454 TAAAGCCTCG
* *
11249464 ACAACTTTTGAAAATATGAAAAGCTCCTCTAAACAGAGGTTCA
1 ACAACTTTTGAAAATTTGAAAAGCTCCTCTAAGCAGAGGTTCA
* * * * *
11249507 ACAACTTTT-AAAACTTTGAAAGGCTCCTTTAAGTAGATGCTT-G
1 ACAACTTTTGAAAA-TTTGAAAAGCTCCTCTAAGCAGA-GGTTCA
* ** *
11249550 ATAACTTTTGAAAAATTTGAAAAGCTTTTTTAAGCAGAGGTTCA
1 ACAACTTTTG-AAAATTTGAAAAGCTCCTCTAAGCAGAGGTTCA
* * *
11249594 ACAAATTTTGAAAATTTAAAAAGCTCTTCTAAGCA
1 ACAACTTTTGAAAATTTGAAAAGCTCCTCTAAGCA
11249629 AAAACTCGAC
Statistics
Matches: 98, Mismatches: 19, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
42 4 0.04
43 60 0.61
44 30 0.31
45 4 0.04
ACGTcount: A:0.39, C:0.15, G:0.14, T:0.32
Consensus pattern (43 bp):
ACAACTTTTGAAAATTTGAAAAGCTCCTCTAAGCAGAGGTTCA
Found at i:11249643 original size:87 final size:86
Alignment explanation
Indices: 11249460--11249645 Score: 205
Period size: 87 Copynumber: 2.2 Consensus size: 86
11249450 TAAATAAAGC
* *
11249460 CTCGACAACTTTTGAAAATATGAAAAGCTCCTCTAAACAGAGGTTCAACAACTTTTAAAACTTTG
1 CTCGACAACTTTTGAAAATATGAAAAGCTCCTCTAAACAGAGGTTCAACAAATTTTAAAACTTTA
* * * **
11249525 AAAGGCTCCTTTAAGTAGATG
66 AAAAGCTCCTTTAAGCAAAAA
* * * ** * *
11249546 CTTGATAACTTTTGAAAAATTTGAAAAGCTTTTTTAAGCAGAGGTTCAACAAATTTTGAAAA-TT
1 CTCGACAACTTTTG-AAAATATGAAAAGCTCCTCTAAACAGAGGTTCAACAAATTTT-AAAACTT
11249610 TAAAAAGCT-CTTCTAAGCAAAAA
64 TAAAAAGCTCCTT-TAAGCAAAAA
11249633 CTCGACAACTTTT
1 CTCGACAACTTTT
11249646 AAAGAAGGCT
Statistics
Matches: 81, Mismatches: 16, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
86 15 0.19
87 62 0.77
88 4 0.05
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.32
Consensus pattern (86 bp):
CTCGACAACTTTTGAAAATATGAAAAGCTCCTCTAAACAGAGGTTCAACAAATTTTAAAACTTTA
AAAAGCTCCTTTAAGCAAAAA
Found at i:11250020 original size:200 final size:200
Alignment explanation
Indices: 11249643--11250122 Score: 509
Period size: 200 Copynumber: 2.4 Consensus size: 200
11249633 CTCGACAACT
** * * *
11249643 TTTAAAGAAGGCTCATCTAACCAAAGGCAATAAAACTTTAGATAGCTTCTCTAACTAAAGGCAGC
1 TTTAAAGAAAACTCATCTAACCAAAGACAATAAAACTTTAAATAGCTTCTCTAACTAAAGGCAAC
* *
11249708 GAAACTTAAAATTAAAAATCTTAGAGGTCTTATAGATTACGCCCTTTGATCTTACAAATCATGCC
66 GAAACTTAAAATTAAAAATCTGAGAGATCTTATAGATTACGCCCTTTGATCTTACAAATCATGCC
* * *
11249773 TAATTTTGAAAGAGTCATTTAACCAAAGGTTCTTAAATTTTAAAGCTCCTCTAACCAGAGGCTAT
131 TAATTTTGAAAGAATCATATAACCAAAGGTTCTTAAATTTAAAAGCTCCTCTAACCAGAGGCTAT
11249838 GAGAC
196 GAGAC
* * * * *
11249843 TTTAAAGAAAACTCATCTAACTAGAGATAATGAAACTTTAAATAG-TTCTTCTAACTAGAGGCAA
1 TTTAAAGAAAACTCATCTAACCAAAGACAATAAAACTTTAAATAGCTTC-TCTAACTAAAGGCAA
* * * * * * *
11249907 TGACACTTAAAATTAAAAATCTGAGAGATCTTATAGGTTATGCCTTTTGATTTTACATATCATGC
65 CGAAACTTAAAATTAAAAATCTGAGAGATCTTATAGATTACGCCCTTTGATCTTACAAATCATGC
* * * * * * *
11249972 CTAATTTTGAAAGAATCCTATAACTAGAGGCTTC-TAGAA-TTAAAAGCTCTTCTAACTAAAATG
130 CTAATTTTGAAAGAATCATATAACCAAAGG-TTCTTA-AATTTAAAAGCTCCTCTAAC-CAGAGG
* * *
11250035 TTATAAAAC
192 CTATGAGAC
* * * * * *
11250044 TTTGAAA-AAAGCTCCTCTAACCAAAGACAATAACACTTTAAAGAAAGCTTCTCTAACTAGAGGT
1 TTT-AAAGAAAACTCATCTAACCAAAGACAATAAAACTTT-AA-ATAGCTTCTCTAACTAAAGGC
* *
11250108 AATGAAACTTTAAAT
63 AACGAAACTTAAAAT
11250123 AGTTTATCTA
Statistics
Matches: 229, Mismatches: 43, Indels: 13
0.80 0.15 0.05
Matches are distributed among these distances:
199 3 0.01
200 148 0.65
201 42 0.18
202 5 0.02
203 28 0.12
204 3 0.01
ACGTcount: A:0.40, C:0.17, G:0.13, T:0.31
Consensus pattern (200 bp):
TTTAAAGAAAACTCATCTAACCAAAGACAATAAAACTTTAAATAGCTTCTCTAACTAAAGGCAAC
GAAACTTAAAATTAAAAATCTGAGAGATCTTATAGATTACGCCCTTTGATCTTACAAATCATGCC
TAATTTTGAAAGAATCATATAACCAAAGGTTCTTAAATTTAAAAGCTCCTCTAACCAGAGGCTAT
GAGAC
Found at i:11250258 original size:66 final size:66
Alignment explanation
Indices: 11250182--11250332 Score: 169
Period size: 66 Copynumber: 2.3 Consensus size: 66
11250172 CAATGTTATT
* * * **
11250182 TGAAAGATTCCTCTAAGA-AAAAGGCATGAAACTTGAATGATTTCTTTAAATAAAGGCTATGGTA
1 TGAATGATTCCTCTAA-ATAAAAGGCATGAAACTTGAATGATTTCTCTAAATAAAGGCCATGAAA
11250246 TA
65 TA
* ** * *
11250248 TGAATGATTCCTCTAAATAAAAGTCATGAAGTTTGAATTATTTCTCTAAATATAGGCCATGAAAT
1 TGAATGATTCCTCTAAATAAAAGGCATGAAACTTGAATGATTTCTCTAAATAAAGGCCATGAAAT
*
11250313 T
66 A
**
11250314 TGAATGATTTTTCTAAATA
1 TGAATGATTCCTCTAAATA
11250333 GAGGGTTTAC
Statistics
Matches: 71, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
65 1 0.01
66 70 0.99
ACGTcount: A:0.39, C:0.11, G:0.15, T:0.35
Consensus pattern (66 bp):
TGAATGATTCCTCTAAATAAAAGGCATGAAACTTGAATGATTTCTCTAAATAAAGGCCATGAAAT
A
Found at i:11250285 original size:33 final size:33
Alignment explanation
Indices: 11250179--11250332 Score: 143
Period size: 33 Copynumber: 4.7 Consensus size: 33
11250169 GGGCAATGTT
* *
11250179 ATTTGAAAGATTCCTCTAAGA-AAAAGGCATGAA
1 ATTTGAATGATTTCTCTAA-ATAAAAGGCATGAA
* * **
11250212 ACTTGAATGATTTCTTTAAAT-AAAGGCTATGGT
1 ATTTGAATGATTTCTCTAAATAAAAGGC-ATGAA
* * *
11250245 ATATGAATGATTCCTCTAAATAAAAGTCATGAA
1 ATTTGAATGATTTCTCTAAATAAAAGGCATGAA
* * *
11250278 GTTTGAATTATTTCTCTAAAT-ATAGGCCATGAA
1 ATTTGAATGATTTCTCTAAATAAAAGG-CATGAA
*
11250311 ATTTGAATGATTTTTCTAAATA
1 ATTTGAATGATTTCTCTAAATA
11250333 GAGGGTTTAC
Statistics
Matches: 94, Mismatches: 22, Indels: 9
0.75 0.18 0.07
Matches are distributed among these distances:
32 10 0.11
33 79 0.84
34 5 0.05
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.36
Consensus pattern (33 bp):
ATTTGAATGATTTCTCTAAATAAAAGGCATGAA
Found at i:11254568 original size:62 final size:62
Alignment explanation
Indices: 11254520--11254635 Score: 155
Period size: 62 Copynumber: 1.9 Consensus size: 62
11254510 TAAAATTTTA
* *
11254520 AAATTTTTCACTATTTGGGCCTATTTAGAAAATTTTTTTCTTAATTTTTTATCTTAATTTCT
1 AAATTTTTCACCATTTGGGCCAATTTAGAAAATTTTTTTCTTAATTTTTTATCTTAATTTCT
* * **
11254582 AAATTTTTCACCATTTGGGTCAATTTATAATTTTTTTTTCTT--TTTTTTAATCTT
1 AAATTTTTCACCATTTGGGCCAATTTAGAAAATTTTTTTCTTAATTTTTT-ATCTT
11254636 TGGAAAGAAA
Statistics
Matches: 47, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
60 6 0.13
61 5 0.11
62 36 0.77
ACGTcount: A:0.24, C:0.11, G:0.06, T:0.59
Consensus pattern (62 bp):
AAATTTTTCACCATTTGGGCCAATTTAGAAAATTTTTTTCTTAATTTTTTATCTTAATTTCT
Found at i:11254569 original size:11 final size:13
Alignment explanation
Indices: 11254550--11254579 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
11254540 CTATTTAGAA
11254550 AATTTTTT-TCTT
1 AATTTTTTATCTT
11254562 AATTTTTTATCTT
1 AATTTTTTATCTT
11254575 AATTT
1 AATTT
11254580 CTAAATTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 8 0.47
13 9 0.53
ACGTcount: A:0.23, C:0.07, G:0.00, T:0.70
Consensus pattern (13 bp):
AATTTTTTATCTT
Found at i:11254810 original size:26 final size:26
Alignment explanation
Indices: 11254753--11254810 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
11254743 TTTACTATTT
* * * *
11254753 GAAATTTCTAAGATTTTTATCCATTT
1 GAAATTCCTAAGATTCTCATCCATTG
11254779 GAAATTCCTAAGATTCTCAT-CATTG
1 GAAATTCCTAAGATTCTCATCCATTG
11254804 GATAATT
1 GA-AATT
11254811 GTCGAATATT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
25 6 0.22
26 21 0.78
ACGTcount: A:0.33, C:0.14, G:0.10, T:0.43
Consensus pattern (26 bp):
GAAATTCCTAAGATTCTCATCCATTG
Found at i:11254952 original size:24 final size:25
Alignment explanation
Indices: 11254899--11254961 Score: 67
Period size: 24 Copynumber: 2.5 Consensus size: 25
11254889 CATTTGGGAC
* *
11254899 AAATTTAAATAAAATTTTCATTTAGA
1 AAATTTATA-AAAATTTACATTTAGA
11254925 AAATTTATAAAAATTTACGATTT-G-
1 AAATTTATAAAAATTTAC-ATTTAGA
*
11254949 AAATTTCTAAAAA
1 AAATTTATAAAAA
11254962 AAAATCCACC
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
24 12 0.36
25 9 0.27
26 12 0.36
ACGTcount: A:0.51, C:0.05, G:0.05, T:0.40
Consensus pattern (25 bp):
AAATTTATAAAAATTTACATTTAGA
Found at i:11259224 original size:13 final size:14
Alignment explanation
Indices: 11259197--11259225 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
11259187 TTTAGAAAAT
11259197 GTTAGAAATGGTTG
1 GTTAGAAATGGTTG
11259211 GTTAGAAA-GGTTG
1 GTTAGAAATGGTTG
11259224 GT
1 GT
11259226 ATGCATGATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.28, C:0.00, G:0.38, T:0.34
Consensus pattern (14 bp):
GTTAGAAATGGTTG
Found at i:11264892 original size:14 final size:14
Alignment explanation
Indices: 11264875--11264907 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
11264865 ACAAAATAAA
11264875 AAAAAAATAAAAGG
1 AAAAAAATAAAAGG
11264889 AAAAAAATAAAAGG
1 AAAAAAATAAAAGG
11264903 AAAAA
1 AAAAA
11264908 GGAAATCTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.82, C:0.00, G:0.12, T:0.06
Consensus pattern (14 bp):
AAAAAAATAAAAGG
Found at i:11267025 original size:66 final size:67
Alignment explanation
Indices: 11266948--11267092 Score: 211
Period size: 66 Copynumber: 2.1 Consensus size: 67
11266938 TAGTAGTGGA
* * *
11266948 GAGGAGAAAAAAGAAACAAAAAGGGCGATTATAGAAGGGGTCTTAGGTTTT-AAAAAAAATTGAA
1 GAGGAGGAAAAAGAAACAAAAAGGACGATTATAGAAGGGGTCTTAGGTTTTAAAAAAAAACTGAA
11267012 GG
66 GG
* * *
11267014 GAGGAGGAAAAAGAAACAAAAATGATGATTATATAAGGGGTCTTAGGTTTTAAAAAAAAAAACTG
1 GAGGAGGAAAAAGAAACAAAAAGGACGATTATAGAAGGGGTCTTAGGTTTT--AAAAAAAAACTG
11267079 AAGG
64 AAGG
11267083 GAGGAGGAAA
1 GAGGAGGAAA
11267093 TACAGAAGAC
Statistics
Matches: 70, Mismatches: 6, Indels: 3
0.89 0.08 0.04
Matches are distributed among these distances:
66 46 0.66
69 24 0.34
ACGTcount: A:0.50, C:0.04, G:0.28, T:0.18
Consensus pattern (67 bp):
GAGGAGGAAAAAGAAACAAAAAGGACGATTATAGAAGGGGTCTTAGGTTTTAAAAAAAAACTGAA
GG
Found at i:11268190 original size:66 final size:66
Alignment explanation
Indices: 11268074--11268207 Score: 205
Period size: 66 Copynumber: 2.0 Consensus size: 66
11268064 GCCCCAATTG
* **
11268074 TTACATGGTTACTGGTTGTACATTTAGAAGTTTAAAGCTTCACTCATTTCATGTCTATTGTTTCT
1 TTACATGGTTACTGGTTATACATTTAGAAGTTTAAAGCTTCACTCATTTCACATCTATTGTTTCT
11268139 T
66 T
* * * *
11268140 TTACATGGTTATTGGTTATACATTTAGAAGTTTAAAGCTTTATTCGTTTCACATCTATTGTTTCT
1 TTACATGGTTACTGGTTATACATTTAGAAGTTTAAAGCTTCACTCATTTCACATCTATTGTTTCT
11268205 T
66 T
11268206 TT
1 TT
11268208 CTTTTACAAA
Statistics
Matches: 61, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
66 61 1.00
ACGTcount: A:0.23, C:0.13, G:0.14, T:0.49
Consensus pattern (66 bp):
TTACATGGTTACTGGTTATACATTTAGAAGTTTAAAGCTTCACTCATTTCACATCTATTGTTTCT
T
Found at i:11269031 original size:3 final size:3
Alignment explanation
Indices: 11269023--11269063 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
11269013 CATGTCATAA
11269023 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
11269064 AAGTGTTGTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:11269073 original size:3 final size:3
Alignment explanation
Indices: 11269067--11269100 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
11269057 TTATTATAAG
*
11269067 TGT TGT TAT TGT TGT TGT TGT TGT TGT TGT TGT T
1 TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT T
11269101 AATATAATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.03, C:0.00, G:0.29, T:0.68
Consensus pattern (3 bp):
TGT
Found at i:11269699 original size:3 final size:3
Alignment explanation
Indices: 11269691--11269728 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
11269681 TTATTTATGC
11269691 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
11269729 GATGATGATG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:11270553 original size:17 final size:19
Alignment explanation
Indices: 11270517--11270553 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
11270507 GATCGAGAAC
*
11270517 TTTGAAGATATTTCTTTAA
1 TTTGAAGATATTTCTATAA
11270536 TTTGAAGAT-TTT-TATAA
1 TTTGAAGATATTTCTATAA
11270553 T
1 T
11270554 ATTCCTAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 5 0.29
18 3 0.18
19 9 0.53
ACGTcount: A:0.32, C:0.03, G:0.11, T:0.54
Consensus pattern (19 bp):
TTTGAAGATATTTCTATAA
Found at i:11273852 original size:12 final size:11
Alignment explanation
Indices: 11273834--11273872 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
11273824 ACATCAATTT
11273834 ATTAAAATAAA
1 ATTAAAATAAA
11273845 AGTTAAAATAAA
1 A-TTAAAATAAA
* *
11273857 ATTAATACAAA
1 ATTAAAATAAA
11273868 ATTAA
1 ATTAA
11273873 TTAAGGGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
11 14 0.56
12 11 0.44
ACGTcount: A:0.67, C:0.03, G:0.03, T:0.28
Consensus pattern (11 bp):
ATTAAAATAAA
Found at i:11275506 original size:22 final size:22
Alignment explanation
Indices: 11275480--11275537 Score: 61
Period size: 19 Copynumber: 2.8 Consensus size: 22
11275470 TGAATTTAAC
*
11275480 TTTAA-ATTAATAAAATATTATT
1 TTTAATATAAATAAAA-ATTATT
11275502 TTTAATATAAATAAAAATTA--
1 TTTAATATAAATAAAAATTATT
*
11275522 TAT-ATATAAATAAAAA
1 TTTAATATAAATAAAAA
11275538 ACTAAATAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
19 13 0.39
20 2 0.06
22 9 0.27
23 9 0.27
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (22 bp):
TTTAATATAAATAAAAATTATT
Found at i:11277282 original size:3 final size:3
Alignment explanation
Indices: 11277269--11277318 Score: 91
Period size: 3 Copynumber: 16.7 Consensus size: 3
11277259 CTCAAGCATT
*
11277269 TTA TGA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
11277317 TT
1 TT
11277319 TTGAAGGCAA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:11278270 original size:11 final size:11
Alignment explanation
Indices: 11278254--11278288 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
11278244 TAATGATATC
11278254 ATTTTAAAATT
1 ATTTTAAAATT
*
11278265 ATTTTAAATATA
1 ATTTTAAA-ATT
11278277 ATTTTAAAATT
1 ATTTTAAAATT
11278288 A
1 A
11278289 AACATATATG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
11 11 0.52
12 10 0.48
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (11 bp):
ATTTTAAAATT
Found at i:11280814 original size:16 final size:16
Alignment explanation
Indices: 11280790--11280852 Score: 56
Period size: 16 Copynumber: 3.9 Consensus size: 16
11280780 TTTTTTTTTT
*
11280790 AGGACTTTGGATTTCA
1 AGGATTTTGGATTTCA
*
11280806 AGGATTTTGGATTTCGG
1 AGGATTTTGGATTTC-A
* *
11280823 GGGGTTTTGGATTT-A
1 AGGATTTTGGATTTCA
*
11280838 ATGGATCTTGGATTT
1 A-GGATTTTGGATTT
11280853 TTAGGGGTTT
Statistics
Matches: 37, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
16 25 0.68
17 12 0.32
ACGTcount: A:0.19, C:0.06, G:0.32, T:0.43
Consensus pattern (16 bp):
AGGATTTTGGATTTCA
Found at i:11280860 original size:33 final size:33
Alignment explanation
Indices: 11280795--11280863 Score: 86
Period size: 33 Copynumber: 2.1 Consensus size: 33
11280785 TTTTTAGGAC
* *
11280795 TTTGGATTTCAAGGATTTTGGATTTCGGGGGGT
1 TTTGGATTTCAAGGATCTTGGATTTCGAGGGGT
**
11280828 TTTGGATTT-AATGGATCTTGGATTTTTAGGGGT
1 TTTGGATTTCAA-GGATCTTGGATTTCGAGGGGT
11280861 TTT
1 TTT
11280864 AGAATCCTAG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
32 2 0.06
33 29 0.94
ACGTcount: A:0.16, C:0.04, G:0.32, T:0.48
Consensus pattern (33 bp):
TTTGGATTTCAAGGATCTTGGATTTCGAGGGGT
Found at i:11282220 original size:24 final size:23
Alignment explanation
Indices: 11282193--11282248 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 23
11282183 ATAGGGTGGC
11282193 TGGTCGGGTAGTTGGTAAGGTAAT
1 TGGTCGGG-AGTTGGTAAGGTAAT
* **
11282217 TGGTCGAAGAGTTGGTTGGGTAAT
1 TGGTCG-GGAGTTGGTAAGGTAAT
11282241 TGGTCGGG
1 TGGTCGGG
11282249 GCAGTTCGGC
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
23 1 0.04
24 25 0.93
25 1 0.04
ACGTcount: A:0.18, C:0.05, G:0.45, T:0.32
Consensus pattern (23 bp):
TGGTCGGGAGTTGGTAAGGTAAT
Found at i:11282315 original size:12 final size:12
Alignment explanation
Indices: 11282300--11282340 Score: 73
Period size: 12 Copynumber: 3.3 Consensus size: 12
11282290 TTCGTTTTAT
11282300 TTTTTTTGTTTG
1 TTTTTTTGTTTG
11282312 TTTTTTTTGTTTG
1 -TTTTTTTGTTTG
11282325 TTTTTTTGTTTG
1 TTTTTTTGTTTG
11282337 TTTT
1 TTTT
11282341 GTTAAATATT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
12 16 0.57
13 12 0.43
ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85
Consensus pattern (12 bp):
TTTTTTTGTTTG
Found at i:11282315 original size:13 final size:13
Alignment explanation
Indices: 11282299--11282340 Score: 77
Period size: 13 Copynumber: 3.3 Consensus size: 13
11282289 TTTCGTTTTA
11282299 TTTTTTTTGTTTG
1 TTTTTTTTGTTTG
11282312 TTTTTTTTGTTTG
1 TTTTTTTTGTTTG
11282325 -TTTTTTTGTTTG
1 TTTTTTTTGTTTG
11282337 TTTT
1 TTTT
11282341 GTTAAATATT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
12 12 0.43
13 16 0.57
ACGTcount: A:0.00, C:0.00, G:0.14, T:0.86
Consensus pattern (13 bp):
TTTTTTTTGTTTG
Found at i:11282625 original size:48 final size:46
Alignment explanation
Indices: 11282500--11283320 Score: 845
Period size: 48 Copynumber: 17.0 Consensus size: 46
11282490 TGGTTTTACA
* * *
11282500 GAAAAGAGCTCCTCTTAGCAGAGGCTCAACAACTTTAAAAATTCTCATAT
1 GAAAA-AGCTCCTCTCAACAGAGGCTCCACAACTTTAAAAA-TCTC-T-T
* * * *
11282550 GGAAAAAGCTCCTCTTAGCAAAGGCTCCACAATTTTAAAAATCTCTT
1 -GAAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCTT
* * *
11282597 GAAAAAAGGCTCATCTTAGCAGAGGCTCCACAACTTTAAAAATTCTCTCT
1 G-AAAAA-GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAA-TCTCT-T
* * * * ** *
11282647 TAAAAAGCTCCTCTTAGCAAAGTTTCCACAACTTTAAAATTCTTTCTT
1 GAAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATC--TCTT
* * *
11282695 GAAAAAGCTCATCTCAACAGAGGTTCCACAACTTTAAAATTCTCATCTT
1 GAAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAAAA--ATC-TCTT
* *
11282744 GAAAAAGCTCCTCTCAACAGAGGCTTCACAACTTTAAAATTCTTTCTT
1 GAAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATC--TCTT
11282792 GAAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATCT
1 GAAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTC-T-T
* *
11282840 GGAAAAAGCTCCTCTCAACAGAGGCTCCACAATTTTAAAATTCTTTCTT
1 -GAAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATC--TCTT
*
11282889 GAAAAAGCTCCTCTCAACAGAGGCTCCATAACTTTAAAAATCTCATCT
1 GAAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTC-T-T
* * * *
11282937 GGAAAAGCTCCTCTCAACAGAGGTTCCACAATTTTAAAATCTCATCTT
1 GAAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAAAA-ATC-TCTT
* *
11282985 GAAAAAACTCCTCTCAGCAGAGGCTCCACAACTTTAAAAATTTTCTCTT
1 GAAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAAAAA---TCTCTT
** *
11283034 GAAAAAAAGCTCCTCTCAGTAGAGGCTCCACAACTTT-AAAATCTTATTT
1 G--AAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATC-T-CTT
* *
11283083 GGAAAAGCTCCTCTCAGCAGAGGCTCCACAACTTTAAAAATCTCATCT
1 GAAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTC-T-T
* *
11283131 GAAAAAACTCCTCTCAACAGAGGCTCCACAACTTTAAAATTCTCATCTT
1 GAAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAAAA--ATC-TCTT
* * *
11283180 GGAAAAGCTCCTCTCAACAAAGGCTCAACAACTTT-AAAATCTCATCT
1 GAAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTC-T-T
*
11283227 GAAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAAAATTCTCATCTT
1 GAAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAAAA--ATC-TCTT
* * *
11283276 GGAAAAGCTCCTCTCAATAGAGGCTCCACAATTTTAAAAATCTCT
1 GAAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCT
11283321 CTTCTCTTTC
Statistics
Matches: 667, Mismatches: 66, Indels: 79
0.82 0.08 0.10
Matches are distributed among these distances:
45 2 0.00
46 11 0.02
47 83 0.12
48 300 0.45
49 178 0.27
50 50 0.07
51 43 0.06
ACGTcount: A:0.36, C:0.26, G:0.11, T:0.28
Consensus pattern (46 bp):
GAAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCTT
Found at i:11282683 original size:96 final size:95
Alignment explanation
Indices: 11282500--11283319 Score: 984
Period size: 97 Copynumber: 8.5 Consensus size: 95
11282490 TGGTTTTACA
* * * *
11282500 GAAAAGAGCTCCTCTTAGCAGAGGCTCAACAACTTTAAAAATTCTCATATGGAAAAAGCTCCTCT
1 GAAAA-AGCTCCTCTCAACAGAGGCTCCACAACTTTAAAAA-TCTCATCT-GAAAAAGCTCCTCT
* * * * *
11282565 TAGCAAAGGCTCCACAATTTTAAAAATC-TCTT
63 CAACAGAGGCTCCACAACTTTAAAACTCTTCTT
* * * *
11282597 GAAAAAAGGCTCATCTTAGCAGAGGCTCCACAACTTTAAAAATTCTC-TCTTAAAAAGCTCCTCT
1 G-AAAAA-GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAA-TCTCATCTGAAAAAGCTCCTCT
* * * ** *
11282661 TAGCAAAGTTTCCACAACTTTAAAATTCTTTCTT
63 CAACAGAGGCTCCACAACTTTAAAACTC-TTCTT
* * *
11282695 GAAAAAGCTCATCTCAACAGAGGTTCCACAACTTTAAAATTCTCATCTTGAAAAAGCTCCTCTCA
1 GAAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATC-TGAAAAAGCTCCTCTCA
* *
11282760 ACAGAGGCTTCACAACTTTAAAATTCTTTCTT
65 ACAGAGGCTCCACAACTTTAAAACTC-TTCTT
11282792 GAAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATCTGGAAAAAGCTCCTCTCA
1 GAAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATCT-GAAAAAGCTCCTCTCA
* *
11282857 ACAGAGGCTCCACAATTTTAAAATTCTTTCTT
65 ACAGAGGCTCCACAACTTTAAAACTC-TTCTT
* *
11282889 GAAAAAGCTCCTCTCAACAGAGGCTCCATAACTTTAAAAATCTCATCTGGAAAAGCTCCTCTCAA
1 GAAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATCTGAAAAAGCTCCTCTCAA
* * *
11282954 CAGAGGTTCCACAATTTTAAAATCTCATCTT
66 CAGAGGCTCCACAACTTTAAAA-CTCTTCTT
* * *
11282985 GAAAAAACTCCTCTCAGCAGAGGCTCCACAACTTTAAAAATTTTC-TCTTGAAAAAAAGCTCCTC
1 GAAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAAAAA-TCTCATC-TG--AAAAAGCTCCTC
** *
11283049 TCAGTAGAGGCTCCACAACTTTAAAA-TCTTATTT
62 TCAACAGAGGCTCCACAACTTTAAAACTCTT-CTT
* * *
11283083 GGAAAAGCTCCTCTCAGCAGAGGCTCCACAACTTTAAAAATCTCATCTGAAAAAACTCCTCTCAA
1 GAAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATCTGAAAAAGCTCCTCTCAA
*
11283148 CAGAGGCTCCACAACTTTAAAATTCTCATCTT
66 CAGAGGCTCCACAACTTTAAAA--CTCTTCTT
* * *
11283180 GGAAAAGCTCCTCTCAACAAAGGCTCAACAACTTT-AAAATCTCATCTGAAAAAGCTCCTCTCAA
1 GAAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATCTGAAAAAGCTCCTCTCAA
*
11283244 CAGAGGCTCCACAACTTTAAAATTCTCATCTT
66 CAGAGGCTCCACAACTTTAAAA--CTCTTCTT
* * *
11283276 GGAAAAGCTCCTCTCAATAGAGGCTCCACAATTTTAAAAATCTC
1 GAAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTC
11283320 TCTTCTCTTT
Statistics
Matches: 649, Mismatches: 56, Indels: 36
0.88 0.08 0.05
Matches are distributed among these distances:
95 39 0.06
96 241 0.37
97 245 0.38
98 91 0.14
99 33 0.05
ACGTcount: A:0.36, C:0.26, G:0.11, T:0.27
Consensus pattern (95 bp):
GAAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATCTGAAAAAGCTCCTCTCAA
CAGAGGCTCCACAACTTTAAAACTCTTCTT
Found at i:11282781 original size:97 final size:97
Alignment explanation
Indices: 11282500--11283323 Score: 1044
Period size: 96 Copynumber: 8.5 Consensus size: 97
11282490 TGGTTTTACA
* * * * *
11282500 GAAAAGAGCTCCTCTTAGCAGAGGCTCAACAACTTTAAAAATTCTCATATGGAAAAAGCTCCTCT
1 GAAAA-AGCTCCTCTCAACAGAGGCTCCACAACTTTAAAAA-TCTCATCTTGAAAAAGCTCCTCT
* * * * *
11282565 TAGCAAAGGCTCCACAATTTTAAAAATC--TCTT
64 CAACAGAGGCTCCACAACTTTAAAATTCTTTCTT
* * *
11282597 GAAAAAAGGCTCATCTTAGCAGAGGCTCCACAACTTTAAAAATTCTC-TCTT-AAAAAGCTCCTC
1 G-AAAAA-GCTCCTCTCAACAGAGGCTCCACAACTTTAAAAA-TCTCATCTTGAAAAAGCTCCTC
* * * **
11282660 TTAGCAAAGTTTCCACAACTTTAAAATTCTTTCTT
63 TCAACAGAGGCTCCACAACTTTAAAATTCTTTCTT
* * *
11282695 GAAAAAGCTCATCTCAACAGAGGTTCCACAACTTTAAAATTCTCATCTTGAAAAAGCTCCTCTCA
1 GAAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATCTTGAAAAAGCTCCTCTCA
*
11282760 ACAGAGGCTTCACAACTTTAAAATTCTTTCTT
66 ACAGAGGCTCCACAACTTTAAAATTCTTTCTT
*
11282792 GAAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATCTGGAAAAAGCTCCTCTCA
1 GAAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATCTTGAAAAAGCTCCTCTCA
*
11282857 ACAGAGGCTCCACAATTTTAAAATTCTTTCTT
66 ACAGAGGCTCCACAACTTTAAAATTCTTTCTT
* *
11282889 GAAAAAGCTCCTCTCAACAGAGGCTCCATAACTTTAAAAATCTCATC-TGGAAAAGCTCCTCTCA
1 GAAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATCTTGAAAAAGCTCCTCTCA
* * *
11282953 ACAGAGGTTCCACAATTTTAAAA-TCTCATCTT
66 ACAGAGGCTCCACAACTTTAAAATTCT-TTCTT
* * *
11282985 GAAAAAACTCCTCTCAGCAGAGGCTCCACAACTTTAAAAATTTTC-TCTTGAAAAAAAGCTCCTC
1 GAAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAAAAA-TCTCATCTTG--AAAAAGCTCCTC
**
11283049 TCAGTAGAGGCTCCACAACTTTAAAA-TCTTAT-TT
63 TCAACAGAGGCTCCACAACTTTAAAATTCTT-TCTT
* * *
11283083 GGAAAAGCTCCTCTCAGCAGAGGCTCCACAACTTTAAAAATCTCATC-TGAAAAAACTCCTCTCA
1 GAAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATCTTGAAAAAGCTCCTCTCA
*
11283147 ACAGAGGCTCCACAACTTTAAAATTCTCATCTT
66 ACAGAGGCTCCACAACTTTAAAATTCT-TTCTT
* * *
11283180 GGAAAAGCTCCTCTCAACAAAGGCTCAACAACTTT-AAAATCTCATC-TGAAAAAGCTCCTCTCA
1 GAAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATCTTGAAAAAGCTCCTCTCA
*
11283243 ACAGAGGCTCCACAACTTTAAAATTCTCATCTT
66 ACAGAGGCTCCACAACTTTAAAATTCT-TTCTT
* * *
11283276 GGAAAAGCTCCTCTCAATAGAGGCTCCACAATTTTAAAAATCTC-TCTT
1 GAAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATCTT
11283324 CTCTTTCTTT
Statistics
Matches: 655, Mismatches: 54, Indels: 36
0.88 0.07 0.05
Matches are distributed among these distances:
95 42 0.06
96 248 0.38
97 240 0.37
98 88 0.13
99 37 0.06
ACGTcount: A:0.35, C:0.26, G:0.11, T:0.28
Consensus pattern (97 bp):
GAAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAAAAATCTCATCTTGAAAAAGCTCCTCTCA
ACAGAGGCTCCACAACTTTAAAATTCTTTCTT
Found at i:11295414 original size:16 final size:16
Alignment explanation
Indices: 11295393--11295450 Score: 62
Period size: 16 Copynumber: 3.5 Consensus size: 16
11295383 TCGGGGGGTT
11295393 TTGGATTTAATGGATC
1 TTGGATTTAATGGATC
** * *
11295409 TTGGATTTTTAGGGGTTT
1 TTGGA--TTTAATGGATC
11295427 TTGGATTTAATGGATC
1 TTGGATTTAATGGATC
11295443 TTGGATTT
1 TTGGATTT
11295451 TTAGGGGTTT
Statistics
Matches: 32, Mismatches: 8, Indels: 4
0.73 0.18 0.09
Matches are distributed among these distances:
16 20 0.62
18 12 0.38
ACGTcount: A:0.19, C:0.03, G:0.28, T:0.50
Consensus pattern (16 bp):
TTGGATTTAATGGATC
Found at i:11295433 original size:34 final size:34
Alignment explanation
Indices: 11295386--11295461 Score: 143
Period size: 34 Copynumber: 2.2 Consensus size: 34
11295376 TTGAATTTCG
*
11295386 GGGGGTTTTGGATTTAATGGATCTTGGATTTTTA
1 GGGGTTTTTGGATTTAATGGATCTTGGATTTTTA
11295420 GGGGTTTTTGGATTTAATGGATCTTGGATTTTTA
1 GGGGTTTTTGGATTTAATGGATCTTGGATTTTTA
11295454 GGGGTTTT
1 GGGGTTTT
11295462 AGAATCATAG
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
34 41 1.00
ACGTcount: A:0.16, C:0.03, G:0.33, T:0.49
Consensus pattern (34 bp):
GGGGTTTTTGGATTTAATGGATCTTGGATTTTTA
Found at i:11296641 original size:17 final size:17
Alignment explanation
Indices: 11296614--11296646 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
11296604 TTTGTTTCTA
11296614 TTTTGGTTTTTTTTTTG
1 TTTTGGTTTTTTTTTTG
11296631 TTTTGGTTTTTTTTTT
1 TTTTGGTTTTTTTTTT
11296647 ACGTCGAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85
Consensus pattern (17 bp):
TTTTGGTTTTTTTTTTG
Found at i:11296841 original size:24 final size:23
Alignment explanation
Indices: 11296814--11296866 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 23
11296804 GTGTGGCTGG
11296814 TCGGGTAGTTGGTAAGGTAATTGA
1 TCGGG-AGTTGGTAAGGTAATTGA
** *
11296838 TCGGAGAGTTGGTTGGGTAATTGG
1 TCGG-GAGTTGGTAAGGTAATTGA
11296862 TCGGG
1 TCGGG
11296867 GCAGTTCGGC
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
23 1 0.04
24 23 0.92
25 1 0.04
ACGTcount: A:0.19, C:0.06, G:0.43, T:0.32
Consensus pattern (23 bp):
TCGGGAGTTGGTAAGGTAATTGA
Found at i:11297871 original size:34 final size:33
Alignment explanation
Indices: 11297794--11297872 Score: 79
Period size: 34 Copynumber: 2.3 Consensus size: 33
11297784 GCATTTCGGG
* *
11297794 TATTCATTTTTGAGAAATCTTAAGTATTCTAGA
1 TATTCATTTTTGAAAAACCTTAAGTATTCTAGA
* * *
11297827 AAATCTATTTTTGAAAAACCTTAAAAGT-TTTTAGA
1 TATTC-ATTTTTGAAAAACCTT--AAGTATTCTAGA
11297862 TATTCATTTTT
1 TATTCATTTTT
11297873 TAGAAACTCG
Statistics
Matches: 36, Mismatches: 7, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
33 3 0.08
34 20 0.56
35 9 0.25
36 4 0.11
ACGTcount: A:0.35, C:0.09, G:0.09, T:0.47
Consensus pattern (33 bp):
TATTCATTTTTGAAAAACCTTAAGTATTCTAGA
Found at i:11301606 original size:12 final size:12
Alignment explanation
Indices: 11301589--11301621 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
11301579 TTTCTTATTA
11301589 ATTTTATTAATT
1 ATTTTATTAATT
11301601 ATTTTATT-ATT
1 ATTTTATTAATT
*
11301612 ATTTTTTTAA
1 ATTTTATTAA
11301622 ATAACAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (12 bp):
ATTTTATTAATT
Found at i:11302293 original size:21 final size:24
Alignment explanation
Indices: 11302249--11302303 Score: 62
Period size: 23 Copynumber: 2.4 Consensus size: 24
11302239 CCGGGGGTTG
* *
11302249 TGTTTTCTTGTGTTTGTGTCTTTT
1 TGTTTTTTTGTGTTTGTGTATTTT
11302273 T-TTTTTTTGT-TTTG-GTATTTT
1 TGTTTTTTTGTGTTTGTGTATTTT
11302294 TGGTTTTTTT
1 T-GTTTTTTT
11302304 CAAAAAGATT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
21 7 0.26
22 4 0.15
23 15 0.56
24 1 0.04
ACGTcount: A:0.02, C:0.04, G:0.18, T:0.76
Consensus pattern (24 bp):
TGTTTTTTTGTGTTTGTGTATTTT
Found at i:11317983 original size:34 final size:34
Alignment explanation
Indices: 11317940--11318024 Score: 93
Period size: 34 Copynumber: 2.5 Consensus size: 34
11317930 GTAAAATTAC
* * * *
11317940 TTTTAAAAATGTATTTTCAG-ATAATTGTAATGCT
1 TTTTGAAAATGAATTTT-AGAATAACTATAATGCT
11317974 TTTTGAAAAT-ACATTTTAGAATAACTATAATGCT
1 TTTTGAAAATGA-ATTTTAGAATAACTATAATGCT
*
11318008 TTTTGAAATTGAATTTT
1 TTTTGAAAATGAATTTT
11318025 TGGTATAATT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
33 2 0.05
34 40 0.93
35 1 0.02
ACGTcount: A:0.36, C:0.06, G:0.11, T:0.47
Consensus pattern (34 bp):
TTTTGAAAATGAATTTTAGAATAACTATAATGCT
Found at i:11318166 original size:16 final size:16
Alignment explanation
Indices: 11318145--11318175 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
11318135 AACTAATGAA
11318145 TATTTAAATAATTTTT
1 TATTTAAATAATTTTT
*
11318161 TATTTAATTAATTTT
1 TATTTAAATAATTTT
11318176 ATGAGGTATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
TATTTAAATAATTTTT
Found at i:11318730 original size:12 final size:13
Alignment explanation
Indices: 11318703--11318735 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
11318693 TTTTCAAGTG
*
11318703 ATTTCTTTATTTT
1 ATTTATTTATTTT
11318716 ATTTATTTA-TTT
1 ATTTATTTATTTT
11318728 ATTTATTT
1 ATTTATTT
11318736 TTTGCCTTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 11 0.58
13 8 0.42
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (13 bp):
ATTTATTTATTTT
Found at i:11319687 original size:19 final size:19
Alignment explanation
Indices: 11319663--11319710 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
11319653 ATGTTAATTA
11319663 ATATTAATATCAATCCTAT
1 ATATTAATATCAATCCTAT
* * *
11319682 ATATTAAAAGCAATTCTAT
1 ATATTAATATCAATCCTAT
*
11319701 ATATGAATAT
1 ATATTAATAT
11319711 ACTATTTTTA
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.46, C:0.10, G:0.04, T:0.40
Consensus pattern (19 bp):
ATATTAATATCAATCCTAT
Found at i:11320433 original size:26 final size:25
Alignment explanation
Indices: 11320372--11320423 Score: 77
Period size: 25 Copynumber: 2.1 Consensus size: 25
11320362 ATAATAATAT
* * *
11320372 TTATTATAATTACAATTGAAAAAAA
1 TTATTATAACTATAATTAAAAAAAA
11320397 TTATTATAACTATAATTAAAAAAAA
1 TTATTATAACTATAATTAAAAAAAA
11320422 TT
1 TT
11320424 TATGTTAACT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.56, C:0.04, G:0.02, T:0.38
Consensus pattern (25 bp):
TTATTATAACTATAATTAAAAAAAA
Found at i:11320954 original size:3 final size:3
Alignment explanation
Indices: 11320946--11320971 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
11320936 GAATAAACCA
11320946 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
11320972 AGGAAACCTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:11325684 original size:156 final size:156
Alignment explanation
Indices: 11325400--11325862 Score: 773
Period size: 156 Copynumber: 2.9 Consensus size: 156
11325390 TTAAAATTTT
* * *
11325400 ACCAAGTAGTTAGTTGTTGAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGA
1 ACCAAGTAGTTAATTATCGAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGA
* *
11325465 AAATTCCTTCACCTCAAGAGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCG
66 AAATTCCCTCACCTCAGGAGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCG
* *
11325530 GATTATTTAAAGAAAAATCAAGATCA
131 GATTAATTAAAGAAAAATCAAAATCA
*
11325556 ACCAATTAGTTAATTATCGAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGA
1 ACCAAGTAGTTAATTATCGAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGA
11325621 AAATTCCCTCACCTCAGGAGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCG
66 AAATTCCCTCACCTCAGGAGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCG
11325686 GATTAATTAAAGAAAAAAAATCAAAATCA
131 GATTAATTAAAG---AAAAATCAAAATCA
* * *
11325715 GCCAAGTAATTAATTATCGGAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGA
1 ACCAAGTAGTTAATTATCGAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGA
* *
11325780 AAATTCCCTCACCTCAGGAGTATGCAAGAAAAACTACTGTTTTTACTTGTAGAGGCTCCGTCGTC
66 AAATTCCCTCACCTCAGGAGTATGCAAGAAAAACTACTG-TTTCACTTGCAGAGGCTCCGTCGTC
11325845 GGATTAATTAAAGAAAAA
130 GGATTAATTAAAGAAAAA
11325863 AGAAAAAAAA
Statistics
Matches: 289, Mismatches: 14, Indels: 7
0.93 0.05 0.02
Matches are distributed among these distances:
156 135 0.47
157 5 0.02
159 113 0.39
160 36 0.12
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.30
Consensus pattern (156 bp):
ACCAAGTAGTTAATTATCGAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGA
AAATTCCCTCACCTCAGGAGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCG
GATTAATTAAAGAAAAATCAAAATCA
Found at i:11325925 original size:12 final size:12
Alignment explanation
Indices: 11325899--11325941 Score: 63
Period size: 11 Copynumber: 3.8 Consensus size: 12
11325889 AAAGTCAAAA
*
11325899 AAAAAAAAAAT-
1 AAAAAAAAATTC
11325910 AAAAAAAAATTC
1 AAAAAAAAATTC
11325922 -AAAAAAAATTC
1 AAAAAAAAATTC
11325933 AAAAAAAAA
1 AAAAAAAAA
11325942 CCTGGAGCGG
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
11 21 0.72
12 8 0.28
ACGTcount: A:0.84, C:0.05, G:0.00, T:0.12
Consensus pattern (12 bp):
AAAAAAAAATTC
Found at i:11326959 original size:23 final size:25
Alignment explanation
Indices: 11326933--11326996 Score: 64
Period size: 23 Copynumber: 2.6 Consensus size: 25
11326923 TAATAATAAT
11326933 AATAATAAATATATAA-CT-ATATA
1 AATAATAAATATATAATCTAATATA
*
11326956 AATAATATACATATA-AATCTAATCTA
1 AATAATA-A-ATATATAATCTAATATA
*
11326982 AATAA-AAATAAATAA
1 AATAATAAATATATAA
11326997 ACAAAGATAT
Statistics
Matches: 34, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
23 11 0.32
24 6 0.18
25 8 0.24
26 9 0.26
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.31
Consensus pattern (25 bp):
AATAATAAATATATAATCTAATATA
Found at i:11327237 original size:1 final size:1
Alignment explanation
Indices: 11327233--11327359 Score: 83
Period size: 1 Copynumber: 127.0 Consensus size: 1
11327223 ATTTTTTTGA
* ** ** ** ** ** **
11327233 TTTTTTTTTATTTTTTGATTTTTTTAATTTTTGATTTTTGATTTTTTTTGATTTTTTTTTTGATT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * * * *
11327298 TTTTTGTTTTTTTGTTTTTTTGTTTTTTTGTTTTTTTTTGTTTTTTGTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
11327360 GCCGAAGCTC
Statistics
Matches: 95, Mismatches: 31, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 95 1.00
ACGTcount: A:0.06, C:0.00, G:0.09, T:0.85
Consensus pattern (1 bp):
T
Found at i:11327254 original size:17 final size:16
Alignment explanation
Indices: 11327224--11327360 Score: 140
Period size: 17 Copynumber: 8.5 Consensus size: 16
11327214 CAACTCAACA
11327224 TTTTTTTGATTTTTTTT
1 TTTTTTTGA-TTTTTTT
11327241 TATTTTTTGATTTTTTT
1 T-TTTTTTGATTTTTTT
** *
11327258 AATTTTTGATTTTTGAT
1 TTTTTTTGATTTTT-TT
11327275 TTTTTTTGA----TTT
1 TTTTTTTGATTTTTTT
11327287 TTTTTTTGATTTTTTT
1 TTTTTTTGATTTTTTT
11327303 GTTTTTTTG-TTTTTTT
1 -TTTTTTTGATTTTTTT
*
11327319 GTTTTTTTGTTTTTTTT
1 -TTTTTTTGATTTTTTT
*
11327336 TGTTTTTTGTTTTTTTT
1 T-TTTTTTGATTTTTTT
11327353 TTTTTTTG
1 TTTTTTTG
11327361 CCGAAGCTCC
Statistics
Matches: 105, Mismatches: 6, Indels: 19
0.81 0.05 0.15
Matches are distributed among these distances:
12 10 0.10
13 1 0.01
16 39 0.37
17 47 0.45
18 8 0.08
ACGTcount: A:0.07, C:0.00, G:0.09, T:0.84
Consensus pattern (16 bp):
TTTTTTTGATTTTTTT
Found at i:11327334 original size:8 final size:8
Alignment explanation
Indices: 11327224--11327360 Score: 120
Period size: 8 Copynumber: 17.0 Consensus size: 8
11327214 CAACTCAACA
11327224 TTTTTTTG
1 TTTTTTTG
*
11327232 ATTTTTTTT
1 -TTTTTTTG
11327241 TATTTTTTG
1 T-TTTTTTG
11327250 ATTTTTTT-
1 -TTTTTTTG
**
11327258 AATTTTTG
1 TTTTTTTG
*
11327266 -ATTTTTG
1 TTTTTTTG
*
11327273 ATTTTTT-
1 TTTTTTTG
**
11327280 TTGATTT-
1 TTTTTTTG
11327287 TTTTTTTG
1 TTTTTTTG
11327295 ATTTTTTTG
1 -TTTTTTTG
11327304 TTTTTTTG
1 TTTTTTTG
11327312 TTTTTTTG
1 TTTTTTTG
11327320 TTTTTTTG
1 TTTTTTTG
*
11327328 TTTTTTTT
1 TTTTTTTG
11327336 TGTTTTTTG
1 T-TTTTTTG
*
11327345 TTTTTTTT
1 TTTTTTTG
11327353 TTTTTTTG
1 TTTTTTTG
11327361 CCGAAGCTCC
Statistics
Matches: 107, Mismatches: 14, Indels: 15
0.79 0.10 0.11
Matches are distributed among these distances:
7 21 0.20
8 51 0.48
9 34 0.32
10 1 0.01
ACGTcount: A:0.07, C:0.00, G:0.09, T:0.84
Consensus pattern (8 bp):
TTTTTTTG
Found at i:11327486 original size:41 final size:41
Alignment explanation
Indices: 11327366--11327867 Score: 686
Period size: 41 Copynumber: 12.1 Consensus size: 41
11327356 TTTTGCCGAA
* * * * * *
11327366 GCTCCTCTAAACAGAGACTCAACAACTTTTG-AAAGTAAATT
1 GCTCCTCTCAACAGAGGCACCACGAC-TTTGAAAAATAAATT
* * *
11327407 GCTCCTCTAAACAGAGGCA--ACGGACTTTGGAAAGTAAATT
1 GCTCCTCTCAACAGAGGCACCAC-GACTTTGAAAAATAAATT
*
11327447 GCTCCTCTCAACAGAGGCACCACGACTTTGAAAAGTAAATT
1 GCTCCTCTCAACAGAGGCACCACGACTTTGAAAAATAAATT
*
11327488 GCTCCTCTCAACAGAGGTACCACGACTTTGGAAAAATAAATT
1 GCTCCTCTCAACAGAGGCACCACGACTTT-GAAAAATAAATT
*
11327530 GCTCTTCTCAACAGAGGCACCACGACTTTGAAAAATAAATT
1 GCTCCTCTCAACAGAGGCACCACGACTTTGAAAAATAAATT
* *
11327571 GCTCCTCTCAACAGAGGCACCACGACTTCGAAAAGTAAATT
1 GCTCCTCTCAACAGAGGCACCACGACTTTGAAAAATAAATT
* * *
11327612 GCTCCTCTAAACAGAGGTACCACGACTTTGAAAAAAATAAATC
1 GCTCCTCTCAACAGAGGCACCACGACTTTG--AAAAATAAATT
11327655 GCTCCTCTCAACAGAGGCACCACGACTTTGAAAAATAAATT
1 GCTCCTCTCAACAGAGGCACCACGACTTTGAAAAATAAATT
* *
11327696 GCTCCTCTCAACAGAGGCACCACGACTTCGAAAAGTAAATT
1 GCTCCTCTCAACAGAGGCACCACGACTTTGAAAAATAAATT
* *
11327737 GCTCCTCTAAACAGAGGTACCACGACTTTGAAAAAATAAATT
1 GCTCCTCTCAACAGAGGCACCACGACTTTG-AAAAATAAATT
* *
11327779 GCTCCTCTCAACAGAGGCACCACGACTTCGAAAAGTAAATT
1 GCTCCTCTCAACAGAGGCACCACGACTTTGAAAAATAAATT
* *
11327820 GCTCCTCTAAACAGAGGTACCACGACTTTGGAAAAATAAATT
1 GCTCCTCTCAACAGAGGCACCACGACTTT-GAAAAATAAATT
*
11327862 ACTCCT
1 GCTCCT
11327868 TGACAATCAT
Statistics
Matches: 417, Mismatches: 35, Indels: 17
0.89 0.07 0.04
Matches are distributed among these distances:
39 6 0.01
40 30 0.07
41 251 0.60
42 93 0.22
43 37 0.09
ACGTcount: A:0.36, C:0.25, G:0.16, T:0.23
Consensus pattern (41 bp):
GCTCCTCTCAACAGAGGCACCACGACTTTGAAAAATAAATT
Found at i:11327555 original size:83 final size:83
Alignment explanation
Indices: 11327366--11327867 Score: 710
Period size: 83 Copynumber: 6.1 Consensus size: 83
11327356 TTTTGCCGAA
* * * * * *
11327366 GCTCCTCTAAACAGAGACTCAACAACTTTTG-AAAGTAAATTGCTCCTCTAAACAGAGG--CAAC
1 GCTCCTCTCAACAGAGGCACCACGAC-TTTGAAAAGTAAATTGCTCCTCTAAACAGAGGTACCAC
*
11327428 GGACTTTGG-AAAGTAAATT
65 -GACTTTGGAAAAATAAATT
*
11327447 GCTCCTCTCAACAGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTCAACAGAGGTACCACG
1 GCTCCTCTCAACAGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGTACCACG
11327512 ACTTTGGAAAAATAAATT
66 ACTTTGGAAAAATAAATT
* * * *
11327530 GCTCTTCTCAACAGAGGCACCACGACTTTGAAAAATAAATTGCTCCTCTCAACAGAGGCACCACG
1 GCTCCTCTCAACAGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGTACCACG
* *
11327595 AC-TTCGAAAAGTAAATT
66 ACTTTGGAAAAATAAATT
* * * * * *
11327612 GCTCCTCTAAACAGAGGTACCACGACTTTGAAAAAAATAAATCGCTCCTCTCAACAGAGGCACCA
1 GCTCCTCTCAACAGAGGCACCACGACTTTG--AAAAGTAAATTGCTCCTCTAAACAGAGGTACCA
11327677 CGACTTT-GAAAAATAAATT
64 CGACTTTGGAAAAATAAATT
*
11327696 GCTCCTCTCAACAGAGGCACCACGACTTCGAAAAGTAAATTGCTCCTCTAAACAGAGGTACCACG
1 GCTCCTCTCAACAGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGTACCACG
*
11327761 ACTTTGAAAAAATAAATT
66 ACTTTGGAAAAATAAATT
*
11327779 GCTCCTCTCAACAGAGGCACCACGACTTCGAAAAGTAAATTGCTCCTCTAAACAGAGGTACCACG
1 GCTCCTCTCAACAGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGTACCACG
11327844 ACTTTGGAAAAATAAATT
66 ACTTTGGAAAAATAAATT
*
11327862 ACTCCT
1 GCTCCT
11327868 TGACAATCAT
Statistics
Matches: 385, Mismatches: 28, Indels: 14
0.90 0.07 0.03
Matches are distributed among these distances:
80 4 0.01
81 47 0.12
82 84 0.22
83 174 0.45
84 74 0.19
85 2 0.01
ACGTcount: A:0.36, C:0.25, G:0.16, T:0.23
Consensus pattern (83 bp):
GCTCCTCTCAACAGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGTACCACG
ACTTTGGAAAAATAAATT
Found at i:11329095 original size:7 final size:8
Alignment explanation
Indices: 11329076--11329106 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
11329066 AATTTGGATC
11329076 TTTTTTCA
1 TTTTTTCA
11329084 TTTTTTCA
1 TTTTTTCA
11329092 TTTTTTCA
1 TTTTTTCA
*
11329100 TTCTTTC
1 TTTTTTC
11329107 TTTCTTTTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.10, C:0.16, G:0.00, T:0.74
Consensus pattern (8 bp):
TTTTTTCA
Found at i:11329122 original size:16 final size:18
Alignment explanation
Indices: 11329093--11329155 Score: 62
Period size: 16 Copynumber: 3.7 Consensus size: 18
11329083 ATTTTTTCAT
11329093 TTTTTCATTCTTTCTTTC
1 TTTTTCATTCTTTCTTTC
*
11329111 TTTTTC-TT-TTTCTTTT
1 TTTTTCATTCTTTCTTTC
* *
11329127 TTTTTCA-TC-ATCTTTT
1 TTTTTCATTCTTTCTTTC
11329143 TTTTCTCATTCTT
1 TTTT-TCATTCTT
11329156 CACCTATTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
16 24 0.65
17 5 0.14
18 8 0.22
ACGTcount: A:0.06, C:0.19, G:0.00, T:0.75
Consensus pattern (18 bp):
TTTTTCATTCTTTCTTTC
Found at i:11333218 original size:160 final size:160
Alignment explanation
Indices: 11332826--11333290 Score: 758
Period size: 156 Copynumber: 2.9 Consensus size: 160
11332816 TTAAAATTTT
* * * *
11332826 ACCAAGTAGTTAGTTGTTGAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGA
1 ACCAAGTAATTAATTATCGAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGA
* *
11332891 AAATTCCTTCACCTCAAGAGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCG
66 AAATTCCCTCACCTCAGGAGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCG
* *
11332956 GATTATTTAAAG----AAAAATCAAGATCA
131 GATTAATTAAAGAAAAAAAAATCAAAATCA
* *
11332982 ACCAATTAGTTAATTATCGAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGA
1 ACCAAGTAATTAATTATCGAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGA
11333047 AAATTCCCTCACCTCAGGAGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCG
66 AAATTCCCTCACCTCAGGAGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCG
11333112 GATTAATTAAAGAAAAAAAAATCAAAATCA
131 GATTAATTAAAGAAAAAAAAATCAAAATCA
* *
11333142 GCCAAGTAATTAATTATCGGAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGA
1 ACCAAGTAATTAATTATCGAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGA
* * *
11333207 AAATTCCCTCACCTCAGGAGTATGCAAGAAAAACTACTATTTTTACTTGTAGAGGCTCCGTCGTC
66 AAATTCCCTCACCTCAGGAGTATGCAAGAAAAACTACT-GTTTCACTTGCAGAGGCTCCGTCGTC
11333272 GGATTAATTAAAGAAAAAA
130 GGATTAATTAAAGAAAAAA
11333291 GAAAAAAAAA
Statistics
Matches: 289, Mismatches: 15, Indels: 5
0.94 0.05 0.02
Matches are distributed among these distances:
156 135 0.47
160 112 0.39
161 42 0.15
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.29
Consensus pattern (160 bp):
ACCAAGTAATTAATTATCGAAAATTATTCTCAATTGACTCTAATACTTTTAGCAGAAAATTGAGA
AAATTCCCTCACCTCAGGAGTATGCAAGAAAAACTACTGTTTCACTTGCAGAGGCTCCGTCGTCG
GATTAATTAAAGAAAAAAAAATCAAAATCA
Found at i:11333329 original size:16 final size:16
Alignment explanation
Indices: 11333310--11333352 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
11333300 AATCAAGATC
*
11333310 AAAATCAAAGTCAAAA
1 AAAATCAAAATCAAAA
**
11333326 AAAAAAAAAATCAAAA
1 AAAATCAAAATCAAAA
11333342 AAAATTCAAAA
1 AAAA-TCAAAA
11333353 AAAAACCTGG
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
16 17 0.81
17 4 0.19
ACGTcount: A:0.77, C:0.09, G:0.02, T:0.12
Consensus pattern (16 bp):
AAAATCAAAATCAAAA
Found at i:11333343 original size:11 final size:11
Alignment explanation
Indices: 11333327--11333357 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
11333317 AAGTCAAAAA
11333327 AAAAAAAAATC
1 AAAAAAAAATC
*
11333338 AAAAAAAATTC
1 AAAAAAAAATC
11333349 AAAAAAAAA
1 AAAAAAAAA
11333358 CCTGGAGCGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.84, C:0.06, G:0.00, T:0.10
Consensus pattern (11 bp):
AAAAAAAAATC
Found at i:11334365 original size:23 final size:25
Alignment explanation
Indices: 11334339--11334402 Score: 64
Period size: 23 Copynumber: 2.6 Consensus size: 25
11334329 TAATAATAAT
11334339 AATAATAAATATATAA-CT-ATATA
1 AATAATAAATATATAATCTAATATA
*
11334362 AATAATATACATATA-AATCTAATCTA
1 AATAATA-A-ATATATAATCTAATATA
*
11334388 AATAA-AAATAAATAA
1 AATAATAAATATATAA
11334403 ACAAAGATAT
Statistics
Matches: 34, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
23 11 0.32
24 6 0.18
25 8 0.24
26 9 0.26
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.31
Consensus pattern (25 bp):
AATAATAAATATATAATCTAATATA
Found at i:11335158 original size:17 final size:17
Alignment explanation
Indices: 11335132--11335178 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
11335122 ATTTTTAATT
11335132 TTATTA-TATTTCAT-TA
1 TTATTATTATTT-ATCTA
11335148 TTATTATTATTTATCTA
1 TTATTATTATTTATCTA
* *
11335165 TTAATATTTTTTAT
1 TTATTATTATTTAT
11335179 TTATCTAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
16 8 0.30
17 19 0.70
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.66
Consensus pattern (17 bp):
TTATTATTATTTATCTA
Found at i:11335180 original size:21 final size:22
Alignment explanation
Indices: 11335154--11335214 Score: 81
Period size: 21 Copynumber: 2.8 Consensus size: 22
11335144 ATTATTATTA
11335154 TTATTTATCTATTAATATT-TT
1 TTATTTATCTATTAATATTCTT
*
11335175 TTATTTATCTAATT-ATTTTCTT
1 TTATTTATCT-ATTAATATTCTT
*
11335197 TTAGTTATCTATTAATAT
1 TTATTTATCTATTAATAT
11335215 ATCTATCTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
21 17 0.50
22 17 0.50
ACGTcount: A:0.28, C:0.07, G:0.02, T:0.64
Consensus pattern (22 bp):
TTATTTATCTATTAATATTCTT
Found at i:11336347 original size:60 final size:60
Alignment explanation
Indices: 11336143--11336347 Score: 263
Period size: 60 Copynumber: 3.4 Consensus size: 60
11336133 TTTTAAATGA
*** * *
11336143 TTTTCTT-AAAATAAAAATTT-TTTAAATAATATTTTTAAGGAAAAGTTGAAATTATTAAT
1 TTTTCTTAAAAATAAAAATTTCAAAAAAT-ATATTTTTAAGGAAAAGTTGAAAGTATCAAT
* * * *
11336202 TTTTCTTGAAAATAAAAATTCCAAAAAAAAATATATTTTCAGGGAAAAGTTGAAAGTATCAAT
1 TTTTCTTAAAAATAAAAATTTC---AAAAAATATATTTTTAAGGAAAAGTTGAAAGTATCAAT
11336265 TTTTCTTAAAAATAAAAATTTCAAAAAATATATTTTTAAGGAAAAGTTGAAAGTATCAAT
1 TTTTCTTAAAAATAAAAATTTCAAAAAATATATTTTTAAGGAAAAGTTGAAAGTATCAAT
11336325 TTTTCTT-AAAATAAAAACTTTCA
1 TTTTCTTAAAAATAAAAA-TTTCA
11336348 TGTTTTTTTA
Statistics
Matches: 128, Mismatches: 12, Indels: 11
0.85 0.08 0.07
Matches are distributed among these distances:
59 17 0.13
60 60 0.47
63 47 0.37
64 4 0.03
ACGTcount: A:0.48, C:0.06, G:0.08, T:0.39
Consensus pattern (60 bp):
TTTTCTTAAAAATAAAAATTTCAAAAAATATATTTTTAAGGAAAAGTTGAAAGTATCAAT
Found at i:11346408 original size:15 final size:15
Alignment explanation
Indices: 11346388--11346418 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
11346378 CTTTAGGGTT
*
11346388 TTAAAAGAAGTTGAA
1 TTAAAAGAAGCTGAA
11346403 TTAAAAGAAGCTGAA
1 TTAAAAGAAGCTGAA
11346418 T
1 T
11346419 GGATTCGAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.52, C:0.03, G:0.19, T:0.26
Consensus pattern (15 bp):
TTAAAAGAAGCTGAA
Found at i:11346758 original size:10 final size:10
Alignment explanation
Indices: 11346743--11346772 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
11346733 ATACTATGCT
11346743 TAAAAAAAGA
1 TAAAAAAAGA
*
11346753 TAAAAAAAAA
1 TAAAAAAAGA
11346763 TAAAAAAAGA
1 TAAAAAAAGA
11346773 GGACTCAAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.83, C:0.00, G:0.07, T:0.10
Consensus pattern (10 bp):
TAAAAAAAGA
Found at i:11347910 original size:43 final size:42
Alignment explanation
Indices: 11347773--11347912 Score: 167
Period size: 42 Copynumber: 3.3 Consensus size: 42
11347763 ATGATTGTCA
* * *
11347773 AGGAGCAATTTATCTTTCCAAAA-TTGTGATGCCTTTGTTTAG
1 AGGAGCAATTTATCTTT-CAAAAGTTATGGTGCCTCTGTTTAG
* * * *
11347815 AAGAGTAATTTACTTTTTC-AAAGTTATGGTGCTTCTGTTTAG
1 AGGAGCAATTTA-TCTTTCAAAAGTTATGGTGCCTCTGTTTAG
11347857 AGGAGCAATTTATCTTTCAAAAGTTATGGTTGCCTCTGTTTAG
1 AGGAGCAATTTATCTTTCAAAAGTTATGG-TGCCTCTGTTTAG
*
11347900 AGGAGTAATTTAT
1 AGGAGCAATTTAT
11347913 TGTTCCCAAA
Statistics
Matches: 82, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
41 8 0.10
42 46 0.56
43 28 0.34
ACGTcount: A:0.27, C:0.11, G:0.20, T:0.41
Consensus pattern (42 bp):
AGGAGCAATTTATCTTTCAAAAGTTATGGTGCCTCTGTTTAG
Found at i:11347935 original size:43 final size:41
Alignment explanation
Indices: 11347811--11348244 Score: 279
Period size: 43 Copynumber: 10.2 Consensus size: 41
11347801 ATGCCTTTGT
* ** * * * *
11347811 TTAGAAGAGTAATTTACTTTTTCAAAGTTATGGTGCTTCTGT
1 TTAGAGGAGTAATTTA-TTTTTCAAAGTCGTTGAGCCTCTGA
* * ** * * *
11347853 TTAGAGGAGCAATTTATCTTTCAAAAGTTATGGTTGCCTCTGT
1 TTAGAGGAGTAATTTATTTTTC-AAAGTCGTTG-AGCCTCTGA
* *
11347896 TTAGAGGAGTAATTTATTGTTCCCAAAGTCATTGAGCCTCTGA
1 TTAGAGGAGTAATTTATT-TT-TCAAAGTCGTTGAGCCTCTGA
* ** *
11347939 TTAGAAGAGCTTTGTTTATTTTCTTTC-AAGTCATTGAGCCTCTGA
1 TTAGAGGAG--TAATTTA--TT-TTTCAAAGTCGTTGAGCCTCTGA
* *
11347984 TTAGAGGAGT--TTTGTTTATTTCAAAAGTCGTTGAACCTCTGA
1 TTAGAGGAGTAATTT-ATT-TTTC-AAAGTCGTTGAGCCTCTGA
* ** * *
11348026 TTAGGGGAG-CCTTCTATTTTTCAAAGTCGTTAAGCCTCTGT
1 TTAGAGGAGTAATT-TATTTTTCAAAGTCGTTGAGCCTCTGA
*
11348067 TTAGAGGAGCTTTATTTATTTTTCAAAGTCGTTGAGCCTCTGA
1 TTAGAGGAG--TAATTTATTTTTCAAAGTCGTTGAGCCTCTGA
** *
11348110 TTAGAGGAGCCATTTATTTTTCAAAGTCGTTGAACCTCTGA
1 TTAGAGGAGTAATTTATTTTTCAAAGTCGTTGAGCCTCTGA
* ** *
11348151 TTAGAAGAGCCATTTA-TTTTCAAAGTCGTGGAGCCTCT-A
1 TTAGAGGAGTAATTTATTTTTCAAAGTCGTTGAGCCTCTGA
* * *
11348190 TTTAGAGGAGCTTTATTTATTTTACTTAAAGTCGTTGAGTCTCT-A
1 -TTAGAGGAG--TAATTTATTTT--TCAAAGTCGTTGAGCCTCTGA
11348235 CTTAGAGGAG
1 -TTAGAGGAG
11348245 CTTTGACCAT
Statistics
Matches: 325, Mismatches: 44, Indels: 43
0.79 0.11 0.10
Matches are distributed among these distances:
39 1 0.00
40 34 0.10
41 76 0.23
42 57 0.18
43 81 0.25
44 13 0.04
45 58 0.18
46 1 0.00
47 4 0.01
ACGTcount: A:0.25, C:0.15, G:0.21, T:0.40
Consensus pattern (41 bp):
TTAGAGGAGTAATTTATTTTTCAAAGTCGTTGAGCCTCTGA
Found at i:11347971 original size:45 final size:43
Alignment explanation
Indices: 11347888--11348248 Score: 336
Period size: 41 Copynumber: 8.5 Consensus size: 43
11347878 AGTTATGGTT
* * * *
11347888 GCCTCTGTTTAGAGGAG--TAATTTATTGTTCCCAAAGTCATTGA
1 GCCTCTGATTAGAGGAGCTTTATTTATT-TT-TCAAAGTCGTTGA
* * *
11347931 GCCTCTGATTAGAAGAGCTTTGTTTATTTTCTTTC-AAGTCATTGA
1 GCCTCTGATTAGAGGAGCTTTATTTA--TT-TTTCAAAGTCGTTGA
* *
11347976 GCCTCTGATTAGAGGAGTTTTGTTTA--TTTCAAAAGTCGTTGA
1 GCCTCTGATTAGAGGAGCTTTATTTATTTTTC-AAAGTCGTTGA
* * * * *
11348018 ACCTCTGATTAGGGGAGC-CT-TCTATTTTTCAAAGTCGTTAA
1 GCCTCTGATTAGAGGAGCTTTATTTATTTTTCAAAGTCGTTGA
*
11348059 GCCTCTGTTTAGAGGAGCTTTATTTATTTTTCAAAGTCGTTGA
1 GCCTCTGATTAGAGGAGCTTTATTTATTTTTCAAAGTCGTTGA
*
11348102 GCCTCTGATTAGAGGAGC--CATTTATTTTTCAAAGTCGTTGA
1 GCCTCTGATTAGAGGAGCTTTATTTATTTTTCAAAGTCGTTGA
* * * *
11348143 ACCTCTGATTAGAAGAGC--CATTTA-TTTTCAAAGTCGTGGA
1 GCCTCTGATTAGAGGAGCTTTATTTATTTTTCAAAGTCGTTGA
*
11348183 GCCTCT-ATTTAGAGGAGCTTTATTTATTTTACTTAAAGTCGTTGA
1 GCCTCTGA-TTAGAGGAGCTTTATTTATTTT--TCAAAGTCGTTGA
*
11348228 GTCTCT-ACTTAGAGGAGCTTT
1 GCCTCTGA-TTAGAGGAGCTTT
11348249 GACCATAATT
Statistics
Matches: 269, Mismatches: 33, Indels: 30
0.81 0.10 0.09
Matches are distributed among these distances:
39 1 0.00
40 36 0.13
41 70 0.26
42 34 0.13
43 54 0.20
45 69 0.26
46 1 0.00
47 4 0.01
ACGTcount: A:0.24, C:0.16, G:0.20, T:0.40
Consensus pattern (43 bp):
GCCTCTGATTAGAGGAGCTTTATTTATTTTTCAAAGTCGTTGA
Found at i:11348128 original size:84 final size:84
Alignment explanation
Indices: 11347888--11348248 Score: 314
Period size: 84 Copynumber: 4.2 Consensus size: 84
11347878 AGTTATGGTT
* * * *
11347888 GCCTCTGTTTAGAGGAG--TAATTTATTGTTCCCAAAGTCATTGAGCCTCTGATTAGAAGAGCTT
1 GCCTCTGATTAGAGGAGCTTTATTTATT-TT--CAAAGTCGTTGAGCCTCTGATTAGAGGAGC-T
** * *
11347951 TGTTTATTTTCTTTC-AAGTCATTGA
62 CATTTA--TT-TTTCAAAGTCGTTAA
* * * *
11347976 GCCTCTGATTAGAGGAGTTTTGTTTA-TTTCAAAAGTCGTTGAACCTCTGATTAGGGGAGC-C-T
1 GCCTCTGATTAGAGGAGCTTTATTTATTTTC-AAAGTCGTTGAGCCTCTGATTAGAGGAGCTCAT
11348038 TCTATTTTTCAAAGTCGTTAA
65 T-TATTTTTCAAAGTCGTTAA
*
11348059 GCCTCTGTTTAGAGGAGCTTTATTTATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGC-CAT
1 GCCTCTGATTAGAGGAGCTTTATTTA-TTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCTCAT
11348123 TTATTTTTCAAAGTCGTTGAA
65 TTATTTTTCAAAGTCGTT-AA
* * * *
11348144 -CCTCTGATTAGAAGAGC--CATTTATTTTCAAAGTCGTGGAGCCTCT-ATTTAGAGGAGCTTTA
1 GCCTCTGATTAGAGGAGCTTTATTTATTTTCAAAGTCGTTGAGCCTCTGA-TTAGAGGAGC-TCA
* *
11348205 TTTATTTTACTTAAAGTCGTTGA
64 TTTATTTT--TCAAAGTCGTTAA
*
11348228 GTCTCT-ACTTAGAGGAGCTTT
1 GCCTCTGA-TTAGAGGAGCTTT
11348249 GACCATAATT
Statistics
Matches: 230, Mismatches: 25, Indels: 37
0.79 0.09 0.13
Matches are distributed among these distances:
80 1 0.00
81 31 0.13
82 9 0.04
83 42 0.18
84 64 0.28
85 33 0.14
86 1 0.00
87 25 0.11
88 18 0.08
89 1 0.00
90 5 0.02
ACGTcount: A:0.24, C:0.16, G:0.20, T:0.40
Consensus pattern (84 bp):
GCCTCTGATTAGAGGAGCTTTATTTATTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCTCATT
TATTTTTCAAAGTCGTTAA
Found at i:11348910 original size:12 final size:11
Alignment explanation
Indices: 11348903--11348933 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
11348893 TTTTTTTCTG
11348903 GAAATTTTTCA
1 GAAATTTTTCA
*
11348914 AAAATTTTTCA
1 GAAATTTTTCA
11348925 GAAATTTTT
1 GAAATTTTT
11348934 AGATTCCGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.39, C:0.06, G:0.06, T:0.48
Consensus pattern (11 bp):
GAAATTTTTCA
Found at i:11349448 original size:4 final size:4
Alignment explanation
Indices: 11349436--11349486 Score: 65
Period size: 4 Copynumber: 13.5 Consensus size: 4
11349426 AGGTTTTTTT
11349436 TTTA TTTTA TTTA TTTA TTTA TTTA TTTA TTTA -TTA -TTA -TTA -TTA
1 TTTA -TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
11349481 TTTA TT
1 TTTA TT
11349487 GATTAGATTA
Statistics
Matches: 45, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
3 12 0.27
4 29 0.64
5 4 0.09
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (4 bp):
TTTA
Found at i:11349688 original size:16 final size:16
Alignment explanation
Indices: 11349661--11349700 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 16
11349651 TGAAAGTATC
11349661 AATTTTTCTTAAAAATA
1 AATTTTTCTTAAAAA-A
11349678 AATTTTT-TTAAAAAA
1 AATTTTTCTTAAAAAA
11349693 ATATTTTT
1 A-ATTTTT
11349701 GAGAGAAAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 2 0.09
16 13 0.59
17 7 0.32
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53
Consensus pattern (16 bp):
AATTTTTCTTAAAAAA
Found at i:11349691 original size:119 final size:118
Alignment explanation
Indices: 11349545--11349919 Score: 494
Period size: 119 Copynumber: 3.2 Consensus size: 118
11349535 TTTTAAATGA
* *
11349545 TTTTCTT-AAAATAAAAATTCTAAAAAAATATATTTTTGAGGAAAATTTGAAAGTATCAATTTTC
1 TTTTCTTAAAAATAAAAA-TCCAAAAAAATATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTC
* *
11349609 CTTGAAGAT-AAAATTTCTAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAAT
65 CTTAAAAATAAAAATTTC-AAAAAAATATTTTTGAG-AAAAGTTGAAAGTATCAAT
** *** **
11349664 TTTTCTTAAAAATAAATTTTTTTAAAAAA-ATATTTTTGA-GAGAAAGTTGAAAAAATCAATTTT
1 TTTTCTTAAAAATAAA-AATCCAAAAAAATATATTTTTGAGGA-AAAGTTGAAAGTATCAATTTT
11349727 CCTTAAAAATAAAAATTTC-AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAAT
64 CCTTAAAAATAAAAATTTCAAAAAAATATTTTTGA-GAAAAGTTGAAAGTATCAAT
*
11349782 TTTTCTTAAAAATAAAAAATCCAAAAAAATATATTTTCG-GAGAAAAGTTGAAAGTATCAATTTT
1 TTTTCTTAAAAAT-AAAAATCCAAAAAAATATATTTTTGAG-GAAAAGTTGAAAGTATCAATTTT
*
11349846 TCTTAAAAATAAAAATTTCAAAAAAAATATTTTTGACGAAAAGTTGAAAGTATCAAT
64 CCTTAAAAATAAAAATTTC-AAAAAAATATTTTTGA-GAAAAGTTGAAAGTATCAAT
11349903 TTTTCTT-AAAATAAAAA
1 TTTTCTTAAAAATAAAAA
11349920 CTTTCATGTT
Statistics
Matches: 226, Mismatches: 19, Indels: 22
0.85 0.07 0.08
Matches are distributed among these distances:
118 56 0.25
119 97 0.43
120 31 0.14
121 42 0.19
ACGTcount: A:0.49, C:0.06, G:0.09, T:0.36
Consensus pattern (118 bp):
TTTTCTTAAAAATAAAAATCCAAAAAAATATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
TTAAAAATAAAAATTTCAAAAAAATATTTTTGAGAAAAGTTGAAAGTATCAAT
Found at i:11349849 original size:179 final size:176
Alignment explanation
Indices: 11349544--11349925 Score: 527
Period size: 179 Copynumber: 2.1 Consensus size: 176
11349534 TTTTTAAATG
* *
11349544 ATTTTCTTAAAATAAAAATTCTAAAAAAATATATTTTTGAGGAAAATTTGAAAGTATCAATTTTC
1 ATTTTCTTAAAATAAAAATT-T-CAAAAATATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTC
* * ** *
11349609 CTTGAAGATAAAATTTCTAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTAAA
64 CTTAAAAATAAAAAATCCAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTAAA
** **
11349674 AATAAATTTTTTTAAAAAAATATTTTTGA-GAGAAAGTTGAAAAAATCA
129 AATAAAAATTTCAAAAAAAATATTTTTGACGA-AAAGTTGAAAAAATCA
*
11349722 ATTTTCCTTAAAAATAAAAATTTCAAAAA-ATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTT
1 ATTTT-CTT-AAAATAAAAATTTCAAAAATATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTC
11349786 CTTAAAAATAAAAAATCCAAAAAAATATATTTTCG-GAGAAAAGTTGAAAGTATCAATTTTTCTT
64 CTTAAAAATAAAAAATCCAAAAAAATAT-TTTT-GAGA-AAAAGTTGAAAGTATCAATTTTTCTT
**
11349850 AAAAATAAAAATTTCAAAAAAAATATTTTTGACGAAAAGTTGAAAGTATCA
126 AAAAATAAAAATTTCAAAAAAAATATTTTTGACGAAAAGTTGAAAAAATCA
11349901 ATTTTTCTTAAAATAAAAACTTTCA
1 A-TTTTCTTAAAATAAAAA-TTTCA
11349926 TGTTTTTTTG
Statistics
Matches: 182, Mismatches: 14, Indels: 15
0.86 0.07 0.07
Matches are distributed among these distances:
177 56 0.31
178 26 0.14
179 82 0.45
180 18 0.10
ACGTcount: A:0.48, C:0.07, G:0.09, T:0.36
Consensus pattern (176 bp):
ATTTTCTTAAAATAAAAATTTCAAAAATATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
TAAAAATAAAAAATCCAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTAAAAA
TAAAAATTTCAAAAAAAATATTTTTGACGAAAAGTTGAAAAAATCA
Found at i:11349925 original size:60 final size:59
Alignment explanation
Indices: 11349545--11349925 Score: 495
Period size: 60 Copynumber: 6.4 Consensus size: 59
11349535 TTTTAAATGA
*
11349545 TTTTCTT-AAAATAAAAA-TTCTAAAAAAATATATTTTTGAGGAAAATTTGAAAGTATCAAT
1 TTTTCTTAAAAATAAAAATTTC-AAAAAAA-ATATTTTTGA-GAAAAGTTGAAAGTATCAAT
* * * *
11349605 TTTCCTTGAAGAT-AAAATTTCTAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAAT
1 TTTTCTTAAAAATAAAAATTTCAAAAAAAATATTTTTGAG-AAAAGTTGAAAGTATCAAT
** ** **
11349664 TTTTCTTAAAAATAAATTTTTTTAAAAAAATATTTTTGAGAGAAAGTTGAAAAAATCAAT
1 TTTTCTTAAAAATAAAAATTTCAAAAAAAATATTTTTGAGA-AAAGTTGAAAGTATCAAT
*
11349724 TTTCCTTAAAAATAAAAATTTC--AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAAT
1 TTTTCTTAAAAATAAAAATTTCAAAAAAAATATTTTTGA-GAAAAGTTGAAAGTATCAAT
* * *
11349782 TTTTCTTAAAAATAAAAAATCCAAAAAAATATATTTTCGGAGAAAAGTTGAAAGTATCAAT
1 TTTTCTTAAAAATAAAAATTTCAAAAAAA-ATATTTT-TGAGAAAAGTTGAAAGTATCAAT
11349843 TTTTCTTAAAAATAAAAATTTCAAAAAAAATATTTTTGACGAAAAGTTGAAAGTATCAAT
1 TTTTCTTAAAAATAAAAATTTCAAAAAAAATATTTTTGA-GAAAAGTTGAAAGTATCAAT
11349903 TTTTCTT-AAAATAAAAACTTTCA
1 TTTTCTTAAAAATAAAAA-TTTCA
11349926 TGTTTTTTTG
Statistics
Matches: 284, Mismatches: 25, Indels: 24
0.85 0.08 0.07
Matches are distributed among these distances:
58 51 0.18
59 53 0.19
60 117 0.41
61 61 0.21
62 2 0.01
ACGTcount: A:0.48, C:0.07, G:0.09, T:0.36
Consensus pattern (59 bp):
TTTTCTTAAAAATAAAAATTTCAAAAAAAATATTTTTGAGAAAAGTTGAAAGTATCAAT
Found at i:11351177 original size:21 final size:21
Alignment explanation
Indices: 11351143--11351182 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
11351133 ATAAAATGAC
** *
11351143 ATCCAAAATCTAAACATAATT
1 ATCCAAAAAATAAAAATAATT
11351164 ATCCAAAAAATAAAAATAA
1 ATCCAAAAAATAAAAATAA
11351183 AAAAATCTAG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.62, C:0.15, G:0.00, T:0.23
Consensus pattern (21 bp):
ATCCAAAAAATAAAAATAATT
Found at i:11351528 original size:28 final size:29
Alignment explanation
Indices: 11351497--11351551 Score: 67
Period size: 29 Copynumber: 1.9 Consensus size: 29
11351487 ATTATTAAAA
*
11351497 TTTTAAATCGTA-TCACATTTTATTTTAT
1 TTTTAAATCGTATTCACATTATATTTTAT
** *
11351525 TTTTGTATCGTATTCATATTATATTTT
1 TTTTAAATCGTATTCACATTATATTTT
11351552 TATATCGTAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
28 10 0.45
29 12 0.55
ACGTcount: A:0.25, C:0.09, G:0.05, T:0.60
Consensus pattern (29 bp):
TTTTAAATCGTATTCACATTATATTTTAT
Found at i:11351549 original size:24 final size:24
Alignment explanation
Indices: 11351517--11351562 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
11351507 TATCACATTT
* *
11351517 TATTTTATTTTTGTATCGTATTCA
1 TATTATATTTTTATATCGTATTCA
11351541 TATTATATTTTTATATCGTATT
1 TATTATATTTTTATATCGTATT
11351563 TTAAATTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.24, C:0.07, G:0.07, T:0.63
Consensus pattern (24 bp):
TATTATATTTTTATATCGTATTCA
Found at i:11353949 original size:11 final size:11
Alignment explanation
Indices: 11353933--11353958 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
11353923 CACATAAGAT
11353933 ATTTATTTGAG
1 ATTTATTTGAG
11353944 ATTTATTTGAG
1 ATTTATTTGAG
11353955 ATTT
1 ATTT
11353959 GTCAGATATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.15, T:0.58
Consensus pattern (11 bp):
ATTTATTTGAG
Found at i:11354072 original size:52 final size:52
Alignment explanation
Indices: 11353997--11354107 Score: 145
Period size: 52 Copynumber: 2.1 Consensus size: 52
11353987 CTTGCAAAAA
* * * *
11353997 AAGAATTCTAAGAGAAAGAAGATTTTTAATAGGTAAGTTTGACTT-GTAAGAG
1 AAGAATTCTAAAAGAAAGAAGATTCTTAATAAGCAAGTTTGACTTAG-AAGAG
*
11354049 AAGAATTCTAAAAGGAAAG-AGATTCTTAATAAGCAAGTTTGACTTAGAGGAG
1 AAGAATTCTAAAA-GAAAGAAGATTCTTAATAAGCAAGTTTGACTTAGAAGAG
11354101 AAGAATT
1 AAGAATT
11354108 TTTAATGAGC
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
52 46 0.88
53 6 0.12
ACGTcount: A:0.44, C:0.05, G:0.23, T:0.28
Consensus pattern (52 bp):
AAGAATTCTAAAAGAAAGAAGATTCTTAATAAGCAAGTTTGACTTAGAAGAG
Found at i:11355151 original size:2 final size:2
Alignment explanation
Indices: 11355144--11355171 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
11355134 GTCATCATTT
11355144 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
11355172 GAGAGAGAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:11355176 original size:2 final size:2
Alignment explanation
Indices: 11355171--11355204 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
11355161 ATATATATAT
11355171 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
11355205 GGGGATCTAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:11355832 original size:30 final size:28
Alignment explanation
Indices: 11355779--11355848 Score: 77
Period size: 28 Copynumber: 2.4 Consensus size: 28
11355769 TTTATATATA
*
11355779 AAAATATATTTTTTAATAGTTTATAATTTTTT
1 AAAA-ATA-TTTTTAATAGTTTAT-A-TTTCT
* *
11355811 AAAAATATTTTTATTATTTTATATTTCT
1 AAAAATATTTTTAATAGTTTATATTTCT
11355839 AAAAATATTT
1 AAAAATATTT
11355849 GGCATTATAT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
28 14 0.40
29 1 0.03
30 13 0.37
31 3 0.09
32 4 0.11
ACGTcount: A:0.40, C:0.01, G:0.01, T:0.57
Consensus pattern (28 bp):
AAAAATATTTTTAATAGTTTATATTTCT
Found at i:11358444 original size:3 final size:3
Alignment explanation
Indices: 11358436--11358470 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
11358426 ATCTTTTTAT
11358436 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
11358471 TTGTGTGTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:11358854 original size:22 final size:22
Alignment explanation
Indices: 11358826--11358870 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
11358816 TATATTTCAC
11358826 ATTTAATATATCAACATAAATT
1 ATTTAATATATCAACATAAATT
11358848 ATTTAATATATCAACATAAATT
1 ATTTAATATATCAACATAAATT
11358870 A
1 A
11358871 CGATAAGATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.51, C:0.09, G:0.00, T:0.40
Consensus pattern (22 bp):
ATTTAATATATCAACATAAATT
Found at i:11359335 original size:4 final size:4
Alignment explanation
Indices: 11359326--11359355 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
11359316 TTTCCTTCTC
*
11359326 CTGT CTGT CTGT CTGT CTGT CTGT CCGT CT
1 CTGT CTGT CTGT CTGT CTGT CTGT CTGT CT
11359356 TTGTTCCAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.00, C:0.30, G:0.23, T:0.47
Consensus pattern (4 bp):
CTGT
Found at i:11362033 original size:2 final size:2
Alignment explanation
Indices: 11362028--11362053 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
11362018 ACATGAGACA
11362028 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
11362054 TTAGAGTCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:11362198 original size:5 final size:5
Alignment explanation
Indices: 11362188--11362218 Score: 53
Period size: 5 Copynumber: 6.0 Consensus size: 5
11362178 TTATCCTCAA
11362188 AAAAT AAAAT AAAAT AAAAT AAAAT AGAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT A-AAAT
11362219 TTGACTATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 21 0.84
6 4 0.16
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:11362566 original size:16 final size:17
Alignment explanation
Indices: 11362540--11362572 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
11362530 TTTTAATGAT
*
11362540 TAATATTTAAATTTTAA
1 TAATATTTAAATATTAA
11362557 TAAT-TTTAAATATTAA
1 TAATATTTAAATATTAA
11362573 CAAAAAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (17 bp):
TAATATTTAAATATTAA
Found at i:11364026 original size:21 final size:22
Alignment explanation
Indices: 11363987--11364028 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
11363977 AGTTTTTAAG
* *
11363987 TAAATATTATTTTATTATTTTC
1 TAAATATTATTATAATATTTTC
11364009 TAAAT-TTATTATAATATTTT
1 TAAATATTATTATAATATTTT
11364029 TCATGTATCT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (22 bp):
TAAATATTATTATAATATTTTC
Found at i:11366582 original size:101 final size:101
Alignment explanation
Indices: 11366388--11366592 Score: 347
Period size: 101 Copynumber: 2.0 Consensus size: 101
11366378 GCAAAGGAAA
* *
11366388 TATGTGATTCTCTTTATTGATTGCTTTGATGCTCTTGATTCAACCTTCGTAAAGCTCACGTTTTA
1 TATGTGATTCTCTTTATTGATTGCTTTGATGCCCTTAATTCAACCTTCGTAAAGCTCACGTTTTA
** *
11366453 CAAACAATGCATGTTAAACTTAGAAAAAAAAAATAC
66 CAAACAACACATGTTAAACTCAGAAAAAAAAAATAC
*
11366489 TATGTGATTCTCTTTATTGATTGCTTTTATGCCCTTAATTCAACCTTCGTAAAGCTCACGTTTTA
1 TATGTGATTCTCTTTATTGATTGCTTTGATGCCCTTAATTCAACCTTCGTAAAGCTCACGTTTT-
11366554 ACAAACAACACATGTTAAACTCAGAAAAAAAAAATAC
65 ACAAACAACACATGTTAAACTCAGAAAAAAAAAATAC
11366591 TA
1 TA
11366593 CAGCAAAAAG
Statistics
Matches: 97, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
101 61 0.63
102 36 0.37
ACGTcount: A:0.35, C:0.18, G:0.11, T:0.36
Consensus pattern (101 bp):
TATGTGATTCTCTTTATTGATTGCTTTGATGCCCTTAATTCAACCTTCGTAAAGCTCACGTTTTA
CAAACAACACATGTTAAACTCAGAAAAAAAAAATAC
Found at i:11367786 original size:21 final size:22
Alignment explanation
Indices: 11367746--11367790 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 22
11367736 TTTTATATCA
*
11367746 AATAATAATTTTATTAAAAATT
1 AATAATAATTGTATTAAAAATT
*
11367768 AATAATAA-TGTATTTAAAATT
1 AATAATAATTGTATTAAAAATT
11367789 AA
1 AA
11367791 AGACATTAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 13 0.62
22 8 0.38
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (22 bp):
AATAATAATTGTATTAAAAATT
Found at i:11368450 original size:13 final size:14
Alignment explanation
Indices: 11368416--11368453 Score: 51
Period size: 13 Copynumber: 2.7 Consensus size: 14
11368406 TATTTTTAAA
*
11368416 AATTTTAAATAATCT
1 AATTTTAAA-AATAT
11368431 AATTTTAAAAATAT
1 AATTTTAAAAATAT
11368445 -ATTTTAAAA
1 AATTTTAAAA
11368454 TTTAATTAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 9 0.41
14 4 0.18
15 9 0.41
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (14 bp):
AATTTTAAAAATAT
Found at i:11369071 original size:32 final size:33
Alignment explanation
Indices: 11369005--11369071 Score: 84
Period size: 33 Copynumber: 2.1 Consensus size: 33
11368995 CAAGATGTTT
**
11369005 TTAAAATTATTTTTATTTTTTATTTAAAATAAA
1 TTAAAATTATTTTTAAGTTTTATTTAAAATAAA
*
11369038 TTAAAA-TATTTTTTAAGTTTTATTTTAAA-AAA
1 TTAAAATTA-TTTTTAAGTTTTATTTAAAATAAA
11369070 TT
1 TT
11369072 GTTAGATGAT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
32 7 0.23
33 23 0.77
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.57
Consensus pattern (33 bp):
TTAAAATTATTTTTAAGTTTTATTTAAAATAAA
Done.