Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19866354
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 74000 characters in sequence are not A, C, G, or T
File 48 of 100
Found at i:11769188 original size:19 final size:17
Alignment explanation
Indices: 11769156--11769190 Score: 52
Period size: 19 Copynumber: 1.9 Consensus size: 17
11769146 ATGGCATTCA
11769156 TTTCTTTTCTTTTTTTC
1 TTTCTTTTCTTTTTTTC
11769173 TTTCATTTTACTTTTTTT
1 TTTC-TTTT-CTTTTTTT
11769191 TCTCTCTTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
18 4 0.25
19 8 0.50
ACGTcount: A:0.06, C:0.14, G:0.00, T:0.80
Consensus pattern (17 bp):
TTTCTTTTCTTTTTTTC
Found at i:11769714 original size:19 final size:21
Alignment explanation
Indices: 11769690--11769737 Score: 64
Period size: 23 Copynumber: 2.3 Consensus size: 21
11769680 GATAACAAAT
11769690 GAAATCCT-ATTAC-CTAAAA
1 GAAATCCTAATTACTCTAAAA
11769709 GAAATCCTAACATTACTCTAAAA
1 GAAATCCT-A-ATTACTCTAAAA
11769732 GAAATC
1 GAAATC
11769738 TTAAAATGAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 8 0.32
22 5 0.20
23 12 0.48
ACGTcount: A:0.48, C:0.21, G:0.06, T:0.25
Consensus pattern (21 bp):
GAAATCCTAATTACTCTAAAA
Found at i:11773313 original size:14 final size:15
Alignment explanation
Indices: 11773283--11773327 Score: 65
Period size: 14 Copynumber: 3.0 Consensus size: 15
11773273 TAATTCCAAA
*
11773283 ATTTTATTATTTTTTT
1 ATTTT-TTATATTTTT
11773299 ATTTTTT-TATTTTT
1 ATTTTTTATATTTTT
11773313 ATTTTTTATATTTTT
1 ATTTTTTATATTTTT
11773328 TCATTTGTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
14 13 0.48
15 9 0.33
16 5 0.19
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (15 bp):
ATTTTTTATATTTTT
Found at i:11773317 original size:22 final size:22
Alignment explanation
Indices: 11773289--11773342 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
11773279 CAAAATTTTA
*
11773289 TTATTTTTTTATTTTTTTATTT
1 TTATTTTTTTATTTTTTCATTT
11773311 TTATTTTTTATATTTTTTCATTT
1 TTATTTTTT-TATTTTTTCATTT
*
11773334 GT-TTTTTTT
1 TTATTTTTTT
11773343 GTTTGAAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
21 1 0.03
22 15 0.52
23 13 0.45
ACGTcount: A:0.13, C:0.02, G:0.02, T:0.83
Consensus pattern (22 bp):
TTATTTTTTTATTTTTTCATTT
Found at i:11773324 original size:23 final size:23
Alignment explanation
Indices: 11773289--11773342 Score: 76
Period size: 23 Copynumber: 2.4 Consensus size: 23
11773279 CAAAATTTTA
*
11773289 TTATTTTTTTATTTTTTTATTT-
1 TTATTTTTTTATTTTTTCATTTG
11773311 TTATTTTTTATATTTTTTCATTTG
1 TTATTTTTT-TATTTTTTCATTTG
11773335 TT-TTTTTT
1 TTATTTTTT
11773343 GTTTGAAAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
22 9 0.31
23 18 0.62
24 2 0.07
ACGTcount: A:0.13, C:0.02, G:0.02, T:0.83
Consensus pattern (23 bp):
TTATTTTTTTATTTTTTCATTTG
Found at i:11773328 original size:31 final size:31
Alignment explanation
Indices: 11773284--11773342 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
11773274 AATTCCAAAA
* *
11773284 TTTTATTATTTTTTTATTTTTTTATTTTTATT
1 TTTTATTATTTTTTCATTTGTTT-TTTTTATT
11773316 TTTTA-TATTTTTTCATTTGTTTTTTTT
1 TTTTATTATTTTTTCATTTGTTTTTTTT
11773343 GTTTGAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 5 0.20
31 15 0.60
32 5 0.20
ACGTcount: A:0.14, C:0.02, G:0.02, T:0.83
Consensus pattern (31 bp):
TTTTATTATTTTTTCATTTGTTTTTTTTATT
Found at i:11773333 original size:8 final size:8
Alignment explanation
Indices: 11773283--11773342 Score: 63
Period size: 8 Copynumber: 7.6 Consensus size: 8
11773273 TAATTCCAAA
*
11773283 ATTTTATT
1 ATTTTTTT
11773291 ATTTTTTT
1 ATTTTTTT
11773299 ATTTTTTT
1 ATTTTTTT
11773307 A--TTTTT
1 ATTTTTTT
11773313 ATTTTTTAT
1 ATTTTTT-T
*
11773322 ATTTTTTC
1 ATTTTTTT
11773330 ATTTGTTTT
1 ATTT-TTTT
11773339 -TTTT
1 ATTTT
11773343 GTTTGAAAAT
Statistics
Matches: 45, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
6 6 0.13
7 1 0.02
8 27 0.60
9 11 0.24
ACGTcount: A:0.15, C:0.02, G:0.02, T:0.82
Consensus pattern (8 bp):
ATTTTTTT
Found at i:11773578 original size:21 final size:20
Alignment explanation
Indices: 11773537--11773583 Score: 51
Period size: 20 Copynumber: 2.3 Consensus size: 20
11773527 TTAATTTAAT
*
11773537 AGAAAAAGAAAAAATACTAA
1 AGAAAAAGAAAAAATAATAA
11773557 AGAAAAA-AAACAAATATATAA
1 AGAAAAAGAAA-AAATA-ATAA
*
11773578 ATAAAA
1 AGAAAA
11773584 TACTTAAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 3 0.13
20 12 0.52
21 8 0.35
ACGTcount: A:0.77, C:0.04, G:0.06, T:0.13
Consensus pattern (20 bp):
AGAAAAAGAAAAAATAATAA
Found at i:11774408 original size:8 final size:7
Alignment explanation
Indices: 11774383--11774429 Score: 51
Period size: 7 Copynumber: 6.7 Consensus size: 7
11774373 ACAGTTAACC
11774383 AAAAAA-
1 AAAAAAT
*
11774389 AAAGAAT
1 AAAAAAT
11774396 AAAAAAT
1 AAAAAAT
11774403 ATAAAAAT
1 A-AAAAAT
* *
11774411 ACAAAAC
1 AAAAAAT
11774418 AAAAAAT
1 AAAAAAT
11774425 AAAAA
1 AAAAA
11774430 TACAAATAAA
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
6 5 0.15
7 21 0.64
8 7 0.21
ACGTcount: A:0.83, C:0.04, G:0.02, T:0.11
Consensus pattern (7 bp):
AAAAAAT
Found at i:11774421 original size:20 final size:20
Alignment explanation
Indices: 11774397--11774435 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
11774387 AAAAAGAATA
11774397 AAAAATATAAAAATACAAAAC
1 AAAAA-ATAAAAATACAAAAC
11774418 AAAAAATAAAAATACAAA
1 AAAAAATAAAAATACAAA
11774436 TAAAATAGGC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.79, C:0.08, G:0.00, T:0.13
Consensus pattern (20 bp):
AAAAAATAAAAATACAAAAC
Found at i:11774997 original size:8 final size:9
Alignment explanation
Indices: 11774974--11775034 Score: 69
Period size: 8 Copynumber: 7.2 Consensus size: 9
11774964 GCCTTTAGGT
*
11774974 TGATGTATA
1 TGATATATA
11774983 TGA-ATATA
1 TGATATATA
11774991 -GATATATA
1 TGATATATA
11774999 T-ATATATA
1 TGATATATA
11775007 TG-TATATA
1 TGATATATA
11775015 TGA-ATATA
1 TGATATATA
11775023 TGTATATATA
1 TG-ATATATA
11775033 TG
1 TG
11775035 TGTGTATATG
Statistics
Matches: 45, Mismatches: 1, Indels: 11
0.79 0.02 0.19
Matches are distributed among these distances:
7 2 0.04
8 32 0.71
9 4 0.09
10 7 0.16
ACGTcount: A:0.43, C:0.00, G:0.13, T:0.44
Consensus pattern (9 bp):
TGATATATA
Found at i:11774999 original size:2 final size:2
Alignment explanation
Indices: 11774986--11775060 Score: 62
Period size: 2 Copynumber: 37.5 Consensus size: 2
11774976 ATGTATATGA
* * *
11774986 AT AT AG AT AT AT AT AT AT AT AT GT AT AT AT GA- AT AT AT GT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT AT AT
* * * * *
11775028 AT AT AT GT GT GT AT AT GT AT AT GT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
11775061 CACACACACA
Statistics
Matches: 59, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
1 1 0.02
2 57 0.97
3 1 0.02
ACGTcount: A:0.41, C:0.00, G:0.12, T:0.47
Consensus pattern (2 bp):
AT
Found at i:11775058 original size:16 final size:16
Alignment explanation
Indices: 11774979--11775060 Score: 74
Period size: 16 Copynumber: 5.0 Consensus size: 16
11774969 TAGGTTGATG
* *
11774979 TATATGAATATAGATA
1 TATATGTATATATATA
* *
11774995 TATATATATATATGTA
1 TATATGTATATATATA
*
11775011 TATATGAATATATGTATA
1 TATATG--TATATATATA
* * *
11775029 TATATGTGTGTATATG
1 TATATGTATATATATA
11775045 TATATGTATATATATA
1 TATATGTATATATATA
11775061 CACACACACA
Statistics
Matches: 50, Mismatches: 14, Indels: 4
0.74 0.21 0.06
Matches are distributed among these distances:
16 36 0.72
18 14 0.28
ACGTcount: A:0.41, C:0.00, G:0.12, T:0.46
Consensus pattern (16 bp):
TATATGTATATATATA
Found at i:11775085 original size:42 final size:42
Alignment explanation
Indices: 11775039--11775146 Score: 162
Period size: 44 Copynumber: 2.5 Consensus size: 42
11775029 TATATGTGTG
11775039 TATATGTATATGTATATATATACACACACACACACATATAAA
1 TATATGTATATGTATATATATACACACACACACACATATAAA
*
11775081 TATATGTATATGTATATATATACACACACACACACACATATATA
1 TATATGTATATGTATATATAT--ACACACACACACACATATAAA
** *
11775125 TATACATATATGTATACATATA
1 TATATGTATATGTATATATATA
11775147 TTCATATACA
Statistics
Matches: 60, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
42 22 0.37
44 38 0.63
ACGTcount: A:0.46, C:0.16, G:0.05, T:0.33
Consensus pattern (42 bp):
TATATGTATATGTATATATATACACACACACACACATATAAA
Found at i:11775131 original size:12 final size:12
Alignment explanation
Indices: 11775116--11775166 Score: 66
Period size: 12 Copynumber: 4.1 Consensus size: 12
11775106 ACACACACAC
11775116 ACATATATATAT
1 ACATATATATAT
*
11775128 ACATATATGTAT
1 ACATATATATAT
11775140 ACATATATTCATAT
1 ACATATA-T-ATAT
*
11775154 ACACATATATAT
1 ACATATATATAT
11775166 A
1 A
11775167 TAAGGTTAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
12 23 0.68
13 2 0.06
14 9 0.26
ACGTcount: A:0.47, C:0.12, G:0.02, T:0.39
Consensus pattern (12 bp):
ACATATATATAT
Found at i:11775680 original size:21 final size:22
Alignment explanation
Indices: 11775656--11775697 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
11775646 TTCTATTCAA
11775656 AAATATAT-TTTTTAAAATATT
1 AAATATATATTTTTAAAATATT
*
11775677 AAATATATATTTTTCAAATAT
1 AAATATATATTTTTAAAATAT
11775698 ACTTTATAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (22 bp):
AAATATATATTTTTAAAATATT
Found at i:11776376 original size:12 final size:13
Alignment explanation
Indices: 11776359--11776387 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
11776349 AATTATATAG
11776359 ATTTAAATTTAA-
1 ATTTAAATTTAAT
11776371 ATTTAAATTTAAT
1 ATTTAAATTTAAT
11776384 ATTT
1 ATTT
11776388 TTATAAGATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (13 bp):
ATTTAAATTTAAT
Found at i:11777064 original size:26 final size:27
Alignment explanation
Indices: 11777010--11777067 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 27
11777000 TTGTGGTTAA
*
11777010 AAAAAATTAAGATAAAAAAATACATTT
1 AAAAAATTAAGATAAAAAAATACAGTT
* **
11777037 AAAAAA-TATGATAAAAAAATTTAGTT
1 AAAAAATTAAGATAAAAAAATACAGTT
11777063 AAAAA
1 AAAAA
11777068 TTTTAAGTAT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
26 21 0.78
27 6 0.22
ACGTcount: A:0.67, C:0.02, G:0.05, T:0.26
Consensus pattern (27 bp):
AAAAAATTAAGATAAAAAAATACAGTT
Found at i:11780166 original size:15 final size:16
Alignment explanation
Indices: 11780139--11780168 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
11780129 AATAATAGAA
11780139 TGTTCGCGTTCGTTTG
1 TGTTCGCGTTCGTTTG
11780155 TGTTCG-GTTCGTTT
1 TGTTCGCGTTCGTTT
11780169 AAATTAAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.00, C:0.17, G:0.30, T:0.53
Consensus pattern (16 bp):
TGTTCGCGTTCGTTTG
Found at i:11780504 original size:76 final size:77
Alignment explanation
Indices: 11780374--11780520 Score: 181
Period size: 76 Copynumber: 1.9 Consensus size: 77
11780364 AAATGCCTTA
* * * *
11780374 AATAATCCCTTACAAAAAATTAAATAGCGTTATTCAAGGTATTTTC-TAACAAAAAATACCTTCA
1 AATAATCCCTCACAAAAAATTAAATAGAGTTATTCAAGGCATTTTCGAAACAAAAAATACCTTCA
11780438 ATAATCTCTTGG
66 ATAATCTCTTGG
* * * * * *
11780450 AATAATCCCTCATAAAAAATTTAATTGAGTTATTCAAGGCATTTATGGCAA-AAAAAATACCTTG
1 AATAATCCCTCACAAAAAATTAAATAGAGTTATTCAAGGCATTT-TCGAAACAAAAAATACCTTC
11780514 AATAATC
65 AATAATC
11780521 CTCAATTTTT
Statistics
Matches: 60, Mismatches: 9, Indels: 3
0.83 0.12 0.04
Matches are distributed among these distances:
76 38 0.63
77 20 0.33
78 2 0.03
ACGTcount: A:0.44, C:0.16, G:0.09, T:0.32
Consensus pattern (77 bp):
AATAATCCCTCACAAAAAATTAAATAGAGTTATTCAAGGCATTTTCGAAACAAAAAATACCTTCA
ATAATCTCTTGG
Found at i:11787685 original size:58 final size:59
Alignment explanation
Indices: 11787571--11787734 Score: 215
Period size: 58 Copynumber: 2.8 Consensus size: 59
11787561 AATTAACAAT
* * * * *
11787571 AATAAAA-ATTCAAAAAATAGTTTTTTTAGGAAAAAATTGAAAGTATTAATTTTCTTTGAA
1 AATAAAATTTTCAAAAAATA-TTTTTTTAGG-AAAAGTTGAAAGTATAAAATTTCTTTAAA
*
11787631 GATAAAATTTTCAAAAAATATTTTTTTAGGAAAAGTTG-AAGTATAAAATTTCTTTAAA
1 AATAAAATTTTCAAAAAATATTTTTTTAGGAAAAGTTGAAAGTATAAAATTTCTTTAAA
* *
11787689 AATAAAATTTTCAAAAAAAATTTTTTTGAGAAAAAGTTGAAAGTAT
1 AATAAAATTTTCAAAAAATATTTTTTT-AGGAAAAGTTGAAAGTAT
11787735 CAATTTGCCT
Statistics
Matches: 92, Mismatches: 9, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
58 42 0.46
59 17 0.18
60 22 0.24
61 11 0.12
ACGTcount: A:0.49, C:0.03, G:0.10, T:0.38
Consensus pattern (59 bp):
AATAAAATTTTCAAAAAATATTTTTTTAGGAAAAGTTGAAAGTATAAAATTTCTTTAAA
Found at i:11787765 original size:59 final size:58
Alignment explanation
Indices: 11787571--11787765 Score: 162
Period size: 58 Copynumber: 3.3 Consensus size: 58
11787561 AATTAACAAT
* * * * * **
11787571 AATAAAA-ATTCAAAAAATAGTTTTTTTAGGAAAAAATTGAAAGTATTAATTTTCTTTGAA
1 AATAAAATCTTCAAAAAATA-TTTTTTTA-GAAAAAGTTG-AAGTATAAAATTTCCTAAAA
* * * * *
11787631 GATAAAATTTTCAAAAAATATTTTTTTAGGAAAAGTTGAAGTATAAAATTTCTTTAAA
1 AATAAAATCTTCAAAAAATATTTTTTTAGAAAAAGTTGAAGTATAAAATTTCCTAAAA
* * *
11787689 AATAAAATTTTCAAAAAAAATTTTTTTGAGAAAAAGTTGAAAGTAT-CAATTTGCCTAAAA
1 AATAAAATCTTCAAAAAATATTTTTTT-AGAAAAAGTTG-AAGTATAAAATTT-CCTAAAA
*
11787749 AAT-GAATACTTCAAAAA
1 AATAAAAT-CTTCAAAAA
11787766 TAATGAAATC
Statistics
Matches: 115, Mismatches: 15, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
58 42 0.37
59 26 0.23
60 36 0.31
61 11 0.10
ACGTcount: A:0.49, C:0.05, G:0.10, T:0.36
Consensus pattern (58 bp):
AATAAAATCTTCAAAAAATATTTTTTTAGAAAAAGTTGAAGTATAAAATTTCCTAAAA
Found at i:11788971 original size:2 final size:2
Alignment explanation
Indices: 11788964--11789049 Score: 163
Period size: 2 Copynumber: 43.0 Consensus size: 2
11788954 ATATTTGACT
11788964 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
*
11789006 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TA TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
11789048 TC
1 TC
11789050 ATATGTTTGA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
2 82 1.00
ACGTcount: A:0.01, C:0.49, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:11793943 original size:1 final size:1
Alignment explanation
Indices: 11793937--11793977 Score: 55
Period size: 1 Copynumber: 41.0 Consensus size: 1
11793927 ATTTGGAGCC
***
11793937 TTTTTTTTTTTTGGATTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
11793978 GAAAAATTTT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
1 37 1.00
ACGTcount: A:0.02, C:0.00, G:0.05, T:0.93
Consensus pattern (1 bp):
T
Found at i:11794585 original size:30 final size:30
Alignment explanation
Indices: 11794524--11794585 Score: 72
Period size: 30 Copynumber: 2.1 Consensus size: 30
11794514 ATTTTTTTGC
* **
11794524 TTATTTATTTATTTATTGGTTAAATTGATA
1 TTATTTATTTATTTATTAGTTAAATAAATA
*
11794554 TTATTTATTTATTTATTTAG-TGAATAAATA
1 TTATTTATTTATTTA-TTAGTTAAATAAATA
11794584 TT
1 TT
11794586 CTTTTAATTT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
30 24 0.89
31 3 0.11
ACGTcount: A:0.32, C:0.00, G:0.08, T:0.60
Consensus pattern (30 bp):
TTATTTATTTATTTATTAGTTAAATAAATA
Found at i:11794725 original size:59 final size:60
Alignment explanation
Indices: 11794627--11794854 Score: 248
Period size: 59 Copynumber: 3.8 Consensus size: 60
11794617 TAACAATAAT
** *
11794627 AAAAATTCAAAAAAAGAGATTTCTTTTAGGAAAGGTTG-AAGTATCAATTTTATTTGAAAATA
1 AAAAATTC-AAAAAA-AGATTT-TTTTAGGAAAAATTGAAAGTATCAATTTTCTTTGAAAATA
* * * *
11794689 AAAAATTCAAAAAATGGTTTTTTTAGGAAAAATTGAAAGTATTAATTTTCTTTGAAGATA
1 AAAAATTCAAAAAAAGATTTTTTTAGGAAAAATTGAAAGTATCAATTTTCTTTGAAAATA
* * * * *
11794749 AAAATTTC-AAAAAATATTTTTTTAGGAAAAGTTG-AAGTATAAATTTTCTTTAAAAATA
1 AAAAATTCAAAAAAAGATTTTTTTAGGAAAAATTGAAAGTATCAATTTTCTTTGAAAATA
** * *
11794807 AAATTTTCAAAAAAAAATTTTTTGA-GAAAAAGTTGAAAGTATCAATTT
1 AAAAATTCAAAAAAAGATTTTTTTAGGAAAAA-TTGAAAGTATCAATTT
11794855 GCCTAAAAAA
Statistics
Matches: 142, Mismatches: 20, Indels: 10
0.83 0.12 0.06
Matches are distributed among these distances:
58 33 0.23
59 52 0.37
60 43 0.30
61 6 0.04
62 8 0.06
ACGTcount: A:0.47, C:0.04, G:0.12, T:0.37
Consensus pattern (60 bp):
AAAAATTCAAAAAAAGATTTTTTTAGGAAAAATTGAAAGTATCAATTTTCTTTGAAAATA
Found at i:11794879 original size:60 final size:59
Alignment explanation
Indices: 11794757--11794879 Score: 131
Period size: 59 Copynumber: 2.1 Consensus size: 59
11794747 TAAAAATTTC
* * * * * * * *
11794757 AAAAAATATTTTTTTAGGAAAAGTTGAAGTATAAATTTTCTTTAAAAATAAAATTTTCA
1 AAAAAAAATTTTTTGAGAAAAAGTTGAAGTATAAATTTGCCTAAAAAATAAAATCTTAA
* *
11794816 AAAAAAAATTTTTTGAGAAAAAGTTGAAAGTATCAATTTGCCTAAAAAAT-GAATACTTAA
1 AAAAAAAATTTTTTGAGAAAAAGTTG-AAGTATAAATTTGCCTAAAAAATAAAAT-CTTAA
11794876 AAAA
1 AAAA
11794880 TAATGAAATC
Statistics
Matches: 52, Mismatches: 10, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
59 26 0.50
60 26 0.50
ACGTcount: A:0.51, C:0.05, G:0.10, T:0.34
Consensus pattern (59 bp):
AAAAAAAATTTTTTGAGAAAAAGTTGAAGTATAAATTTGCCTAAAAAATAAAATCTTAA
Found at i:11794879 original size:118 final size:120
Alignment explanation
Indices: 11794636--11794879 Score: 269
Period size: 118 Copynumber: 2.0 Consensus size: 120
11794626 TAAAAATTCA
* * *
11794636 AAAAAAGAGATTTCTTTTAGGAAAGGTTGAAGTATCAATTTTATTTGAAAATAAAAAATTCAAAA
1 AAAAAAGAGATTTCTTTTAGGAAAAGTTGAAGTATAAATTTTATTTAAAAATAAAAAATTCAAAA
*** * * * * ** * *
11794701 AATGGTTTTTTTAGGAAAAATTGAAAGTATTAATTTTCTTTGAAGATAAAAATTT
66 AAAAATTTTTTGAGGAAAAATTGAAAGTATCAATTTGCCTAAAAAATAAAAACTT
* * * **
11794756 CAAAAA-ATATTT-TTTTAGGAAAAGTTGAAGTATAAATTTTCTTTAAAAATAAAATTTTCAAAA
1 AAAAAAGAGATTTCTTTTAGGAAAAGTTGAAGTATAAATTTTATTTAAAAATAAAAAATTCAAAA
* *
11794819 AAAAATTTTTTGA-GAAAAAGTTGAAAGTATCAATTTGCCTAAAAAATGAATACTT
66 AAAAATTTTTTGAGGAAAAA-TTGAAAGTATCAATTTGCCTAAAAAATAAAAACTT
11794874 AAAAAA
1 AAAAAA
11794880 TAATGAAATC
Statistics
Matches: 101, Mismatches: 22, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
117 6 0.06
118 85 0.84
119 5 0.05
120 5 0.05
ACGTcount: A:0.48, C:0.05, G:0.12, T:0.36
Consensus pattern (120 bp):
AAAAAAGAGATTTCTTTTAGGAAAAGTTGAAGTATAAATTTTATTTAAAAATAAAAAATTCAAAA
AAAAATTTTTTGAGGAAAAATTGAAAGTATCAATTTGCCTAAAAAATAAAAACTT
Found at i:11802739 original size:2 final size:2
Alignment explanation
Indices: 11802692--11802723 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
11802682 TCATATAGCA
*
11802692 AT AT AT AT AT AT AT AT AT AT AT GT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
11802724 GAATTATATT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:11803336 original size:24 final size:24
Alignment explanation
Indices: 11803298--11803346 Score: 82
Period size: 24 Copynumber: 2.0 Consensus size: 24
11803288 CATTATCAGT
11803298 AAGGGTAATTTAGAATTTGAGAAC
1 AAGGGTAATTTAGAATTTGAGAAC
11803322 AAGGGT-ATTTCAGAATTTGAGAAC
1 AAGGGTAATTT-AGAATTTGAGAAC
11803346 A
1 A
11803347 TGTAATTTCG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 4 0.17
24 20 0.83
ACGTcount: A:0.41, C:0.06, G:0.24, T:0.29
Consensus pattern (24 bp):
AAGGGTAATTTAGAATTTGAGAAC
Found at i:11805282 original size:21 final size:21
Alignment explanation
Indices: 11805256--11805297 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
11805246 AAAAAAGACA
11805256 AATATGATAATGAGAAGTGAG
1 AATATGATAATGAGAAGTGAG
11805277 AATATGATAATGAGAAGTGAG
1 AATATGATAATGAGAAGTGAG
11805298 CAATTGTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.48, C:0.00, G:0.29, T:0.24
Consensus pattern (21 bp):
AATATGATAATGAGAAGTGAG
Found at i:11805694 original size:78 final size:80
Alignment explanation
Indices: 11805600--11805748 Score: 239
Period size: 79 Copynumber: 1.9 Consensus size: 80
11805590 AACTGAAAGC
*
11805600 AAGAATTATCGTCACAAGTAAAGCAGGC-TTTTTTGCACTAATAACTCCCAAAATAAGGCACAA-
1 AAGAATTATCGCCACAAGTAAAGCAGGCTTTTTTTGCACTAATAACTCCCAAAATAAGGCACAAG
11805663 AAATAACTGAAGGTA
66 AAATAACTGAAGGTA
** * *
11805678 AAGAATTATCGCCACAAGTAAAGCAGGCTTTTTTTGCACTAATTCCTCTCAGAATAAGGCACAAG
1 AAGAATTATCGCCACAAGTAAAGCAGGCTTTTTTTGCACTAATAACTCCCAAAATAAGGCACAAG
11805743 AAATAA
66 AAATAA
11805749 AAACTTGTGA
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
78 27 0.42
79 31 0.48
80 6 0.09
ACGTcount: A:0.42, C:0.19, G:0.15, T:0.24
Consensus pattern (80 bp):
AAGAATTATCGCCACAAGTAAAGCAGGCTTTTTTTGCACTAATAACTCCCAAAATAAGGCACAAG
AAATAACTGAAGGTA
Found at i:11806573 original size:72 final size:72
Alignment explanation
Indices: 11806494--11806630 Score: 229
Period size: 72 Copynumber: 1.9 Consensus size: 72
11806484 TGGACACGAT
*
11806494 ACCCCCAAAGGGTAGAAAAAAAGAAAATATGAAGGAAAAATTTCCCTGGACACCTCAAAATTTTC
1 ACCCCCAAAGAGTAGAAAAAAAGAAAATATGAAGGAAAAATTTCCCTGGACACCTCAAAATTTTC
11806559 TTTTGAC
66 TTTTGAC
* * * *
11806566 ACCCCCAAAGAGTGGAAAACAAGAAAATTTGAAGGAAAATTTTCCCTGGACACCTCAAAATTTTC
1 ACCCCCAAAGAGTAGAAAAAAAGAAAATATGAAGGAAAAATTTCCCTGGACACCTCAAAATTTTC
11806631 CCTTGGACAA
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
72 60 1.00
ACGTcount: A:0.42, C:0.20, G:0.15, T:0.22
Consensus pattern (72 bp):
ACCCCCAAAGAGTAGAAAAAAAGAAAATATGAAGGAAAAATTTCCCTGGACACCTCAAAATTTTC
TTTTGAC
Found at i:11808328 original size:22 final size:22
Alignment explanation
Indices: 11808286--11808328 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
11808276 TAAAATTTTA
* *
11808286 ATAAAAATTATATATAAATTTG
1 ATAAAAATTAAAAATAAATTTG
*
11808308 ATAAAAATTAAAAATATATTT
1 ATAAAAATTAAAAATAAATTT
11808329 CATATTTAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (22 bp):
ATAAAAATTAAAAATAAATTTG
Found at i:11808604 original size:18 final size:18
Alignment explanation
Indices: 11808583--11808618 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
11808573 ATAAGTTTTA
11808583 AAAATTAAATATTAATAT
1 AAAATTAAATATTAATAT
* *
11808601 AAAATTATATTTTAATAT
1 AAAATTAAATATTAATAT
11808619 TTTAATAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (18 bp):
AAAATTAAATATTAATAT
Found at i:11811295 original size:32 final size:32
Alignment explanation
Indices: 11811258--11811320 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
11811248 CAATTTTATC
11811258 AACTTAATTAAATAGGAATTAGCTTTGATTTT
1 AACTTAATTAAATAGGAATTAGCTTTGATTTT
*
11811290 AACTTAATTAAATTGGAATTAGCTTTGATTT
1 AACTTAATTAAATAGGAATTAGCTTTGATTT
11811321 CTTGTTCCTC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.06, G:0.13, T:0.44
Consensus pattern (32 bp):
AACTTAATTAAATAGGAATTAGCTTTGATTTT
Found at i:11813802 original size:5 final size:5
Alignment explanation
Indices: 11813788--11813822 Score: 54
Period size: 5 Copynumber: 7.0 Consensus size: 5
11813778 TTGATACTTG
11813788 AATT- AATTA AATTA AATTA AATTA AATTA GAATTA
1 AATTA AATTA AATTA AATTA AATTA AATTA -AATTA
11813823 TCCGATTTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
4 4 0.14
5 20 0.69
6 5 0.17
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (5 bp):
AATTA
Found at i:11815431 original size:19 final size:19
Alignment explanation
Indices: 11815409--11815445 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
11815399 ATTAATTTTA
*
11815409 ATAATTTATTAATAAAATT
1 ATAATTTAATAATAAAATT
*
11815428 ATAATTTAATATTAAAAT
1 ATAATTTAATAATAAAAT
11815446 AATTCAATAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (19 bp):
ATAATTTAATAATAAAATT
Found at i:11815503 original size:17 final size:17
Alignment explanation
Indices: 11815476--11815523 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
11815466 TTTTATTATT
11815476 TTTATAAATTTTAAATAA
1 TTTA-AAATTTTAAATAA
** *
11815494 TTTAAAATTTTTTATTA
1 TTTAAAATTTTAAATAA
*
11815511 TATAAAATTTTAA
1 TTTAAAATTTTAA
11815524 TCAAATACCT
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
17 20 0.83
18 4 0.17
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
TTTAAAATTTTAAATAA
Found at i:11819222 original size:15 final size:13
Alignment explanation
Indices: 11819190--11819229 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
11819180 ATCTACTTAA
11819190 ATATATTAAAATT
1 ATATATTAAAATT
* *
11819203 GTATATTAAAATA
1 ATATATTAAAATT
*
11819216 ATATATAAAAATT
1 ATATATTAAAATT
11819229 A
1 A
11819230 AAAAAATTAA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (13 bp):
ATATATTAAAATT
Found at i:11819242 original size:16 final size:18
Alignment explanation
Indices: 11819207--11819249 Score: 63
Period size: 16 Copynumber: 2.4 Consensus size: 18
11819197 AAAATTGTAT
11819207 ATTAAAATAATATATAAAA
1 ATTAAAA-AATATATAAAA
11819226 ATTAAAAAA-AT-TAAAA
1 ATTAAAAAATATATAAAA
11819242 ATTAAAAA
1 ATTAAAAA
11819250 CCAGTAAATC
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
16 13 0.54
17 2 0.08
18 2 0.08
19 7 0.29
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (18 bp):
ATTAAAAAATATATAAAA
Found at i:11820173 original size:28 final size:26
Alignment explanation
Indices: 11820131--11820191 Score: 86
Period size: 28 Copynumber: 2.3 Consensus size: 26
11820121 TTTTTCATTG
* *
11820131 AATTTTTTTTTAATCGCAGCTACAGT
1 AATTTTTTTTTAATCACAGCTACAAT
11820157 AATTATTTTTTTCAATCACAGCTACAAT
1 AATT-TTTTTTT-AATCACAGCTACAAT
11820185 AATTTTT
1 AATTTTT
11820192 ATTACTATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
26 4 0.13
27 10 0.32
28 17 0.55
ACGTcount: A:0.31, C:0.15, G:0.07, T:0.48
Consensus pattern (26 bp):
AATTTTTTTTTAATCACAGCTACAAT
Found at i:11821727 original size:24 final size:23
Alignment explanation
Indices: 11821684--11821729 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
11821674 GCACTTTAAT
*
11821684 CAATATAAAAGCATATGAAAATG
1 CAATATAAAAGCATAGGAAAATG
*
11821707 CAATATTAAAGCATAAGGAAAAT
1 CAATATAAAAGCAT-AGGAAAAT
11821730 CTAAAATTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 13 0.65
24 7 0.35
ACGTcount: A:0.57, C:0.09, G:0.13, T:0.22
Consensus pattern (23 bp):
CAATATAAAAGCATAGGAAAATG
Found at i:11826000 original size:15 final size:16
Alignment explanation
Indices: 11825982--11826019 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
11825972 CACTTCTCCA
*
11825982 TTTTTCTTTT-CT-TT
1 TTTTTTTTTTGCTCTT
11825996 TTTTTTTTTTGCTCTT
1 TTTTTTTTTTGCTCTT
11826012 TTTTTTTT
1 TTTTTTTT
11826020 ATTATGGTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 9 0.43
15 2 0.10
16 10 0.48
ACGTcount: A:0.00, C:0.11, G:0.03, T:0.87
Consensus pattern (16 bp):
TTTTTTTTTTGCTCTT
Found at i:11829461 original size:27 final size:28
Alignment explanation
Indices: 11829410--11829462 Score: 74
Period size: 27 Copynumber: 1.9 Consensus size: 28
11829400 AAAAATACCC
*
11829410 ATTTAAATAATATATGATTAGATTAAGT
1 ATTTAAATAATATATGATTAAATTAAGT
11829438 ATTTAAA-AATATCATGA-TAAATTAA
1 ATTTAAATAATAT-ATGATTAAATTAA
11829463 TGATATTATT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
27 12 0.52
28 11 0.48
ACGTcount: A:0.51, C:0.02, G:0.08, T:0.40
Consensus pattern (28 bp):
ATTTAAATAATATATGATTAAATTAAGT
Found at i:11830093 original size:22 final size:22
Alignment explanation
Indices: 11830054--11830104 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
11830044 TATATATAAC
*
11830054 TCAAATATTTTGTAATAAA-TA
1 TCAAATTTTTTGTAATAAATTA
*
11830075 TCAAATTTTTTTTACATAAATTA
1 TCAAATTTTTTGTA-ATAAATTA
11830098 T-AAATTT
1 TCAAATTT
11830105 ATACATCTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
21 12 0.46
22 11 0.42
23 3 0.12
ACGTcount: A:0.43, C:0.06, G:0.02, T:0.49
Consensus pattern (22 bp):
TCAAATTTTTTGTAATAAATTA
Found at i:11830167 original size:174 final size:175
Alignment explanation
Indices: 11829867--11830206 Score: 529
Period size: 174 Copynumber: 1.9 Consensus size: 175
11829857 CATAAAACAT
* * *
11829867 TATATATGAAAACTCAAATATTTTATAATAAATGTCAAGTTTTTTTTACATAAGTTATAAATTTA
1 TATATATGAAAACTCAAATATTTTATAATAAATATCAAATTTTTTTTACATAAATTATAAATTTA
* *
11829932 TGCATCGTAATTTTATTACATAAAACACAAAAAAAATTTGATTGTCTAATATTTATTTGGATTAT
66 TACATCGTAATTTTATTACATAAAACACAAAAAAAATTTGATTATCTAATATTTATTTGGATTAT
* *
11829997 TGACTTTAGATTTTCTTGTATTCATTTTTTTAAAACCATTATACA
131 TGACTTTAGATTTTCTTATATCCATTTTTTTAAAACCATTATACA
* *
11830042 TATATAT-ATAACTCAAATATTTTGTAATAAATATCAAATTTTTTTTACATAAATTATAAATTTA
1 TATATATGAAAACTCAAATATTTTATAATAAATATCAAATTTTTTTTACATAAATTATAAATTTA
* * ** **
11830106 TACATCTTAATTTTATTACATAAAACATAATGAACTTTTGATTATCTAATATTTATTTGGATTAT
66 TACATCGTAATTTTATTACATAAAACACAAAAAAAATTTGATTATCTAATATTTATTTGGATTAT
*
11830171 TGACTTTTGATTTTCTTATATCCATTTTTTTAAAAC
131 TGACTTTAGATTTTCTTATATCCATTTTTTTAAAAC
11830207 AATCATTTTT
Statistics
Matches: 149, Mismatches: 16, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
174 142 0.95
175 7 0.05
ACGTcount: A:0.38, C:0.09, G:0.06, T:0.47
Consensus pattern (175 bp):
TATATATGAAAACTCAAATATTTTATAATAAATATCAAATTTTTTTTACATAAATTATAAATTTA
TACATCGTAATTTTATTACATAAAACACAAAAAAAATTTGATTATCTAATATTTATTTGGATTAT
TGACTTTAGATTTTCTTATATCCATTTTTTTAAAACCATTATACA
Found at i:11830694 original size:221 final size:218
Alignment explanation
Indices: 11830248--11830817 Score: 620
Period size: 216 Copynumber: 2.6 Consensus size: 218
11830238 TAGTTTTGTC
* * * * *
11830248 ACATTTATATTTTTTACCTTTGATTTTTTTTGTGAC--ATGATCTTT-TAACTCTTTTAAGGATG
1 ACATTTATATTTTTTACTTTTGA-TGTTCTTGTGACTTATGA-CTTTCCATCTCTTTTAAGGATG
* * * * * *
11830310 AAAGTTATATGAATGTCTTTTATGTTTTTATTACACTTTTCT-TCT-AATTATTGTTAAG-AATA
64 AAAGTTATATGAGTGTCTTTCATGTTTCT-TTACACTTTTTTCTCTCAATTCTTGTT-AGTCATA
* **
11830372 TTACTTTGATTAATAACTTTTGATTTTCTTGTATTCATTTTATTTTAAACCATTATTTATTAAAA
127 TTACTTGGATTAATAACTTTTGATTTTCTTGTATTCATTTTATTTTAAACCATTATCAATTAAAA
*
11830437 TTTATTAATCAAACCTTTGATTTGGTA
192 TTTATCAATCAAACCTTTGATTTGGTA
* * * * *
11830464 ACATTTATATTTTTTACTTTTGA-GTTCTTGTGATTTATTG-TTTTCTATCTCTTTTATGGGTGA
1 ACATTTATATTTTTTACTTTTGATGTTCTTGTGACTTA-TGACTTTCCATCTCTTTTAAGGATGA
* * *
11830527 GAGTTATATGAGTTTCTTTCATGTTTCTTGTACATTTTTTTCTCTCAATTCTTGTTAGTCATATT
65 AAGTTATATGAGTGTCTTTCATGTTTCTT-TACACTTTTTTCTCTCAATTCTTGTTAGTCATATT
* * *
11830592 -CTTGGATTATTGACTTTTGATTTTCTTGTATTCATTTTCTTGATCTAAAACCATTATCAATTAA
129 ACTTGGATTAATAACTTTTGATTTTCTTGTATTCATTTTATT--T-T-AAACCATTATCAATTAA
* * * *
11830656 AATTTATCGATCAAATCTTTGGTTTTGTA
190 AATTTATCAATCAAACCTTTGATTTGGTA
* *
11830685 ACATTTATATTTTTTACTTTTGATTTTCTTGTGACTTATGACTTTCCATCTCTTTTAAGGATAAA
1 ACATTTATATTTTTTACTTTTGATGTTCTTGTGACTTATGACTTTCCATCTCTTTTAAGGATGAA
* * * * *
11830750 AGGTTATATTAGTGTC-TTCTATGTCTCCATTACACTTGTTTCTCTCAATTCTTGTTTGTCATAT
66 A-GTTATATGAGTGTCTTTC-ATGT-TTCTTTACACTTTTTTCTCTCAATTCTTGTTAGTCATAT
11830814 TACT
128 TACT
11830818 AATTATGAGA
Statistics
Matches: 293, Mismatches: 43, Indels: 28
0.80 0.12 0.08
Matches are distributed among these distances:
214 8 0.03
215 4 0.01
216 70 0.24
217 44 0.15
218 14 0.05
219 1 0.00
220 1 0.00
221 64 0.22
222 34 0.12
223 48 0.16
224 5 0.02
ACGTcount: A:0.24, C:0.12, G:0.11, T:0.53
Consensus pattern (218 bp):
ACATTTATATTTTTTACTTTTGATGTTCTTGTGACTTATGACTTTCCATCTCTTTTAAGGATGAA
AGTTATATGAGTGTCTTTCATGTTTCTTTACACTTTTTTCTCTCAATTCTTGTTAGTCATATTAC
TTGGATTAATAACTTTTGATTTTCTTGTATTCATTTTATTTTAAACCATTATCAATTAAAATTTA
TCAATCAAACCTTTGATTTGGTA
Found at i:11831198 original size:16 final size:15
Alignment explanation
Indices: 11831158--11831200 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
11831148 ATTAGTGTAT
11831158 TTTTTATTTTTTATAA
1 TTTTT-TTTTTTATAA
* *
11831174 TTTTCTTTTTTATCA
1 TTTTTTTTTTTATAA
11831189 TGTTTTTTTTTT
1 T-TTTTTTTTTT
11831201 TTGGCAGTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
15 10 0.43
16 13 0.57
ACGTcount: A:0.14, C:0.05, G:0.02, T:0.79
Consensus pattern (15 bp):
TTTTTTTTTTTATAA
Found at i:11832912 original size:3 final size:3
Alignment explanation
Indices: 11832904--11832956 Score: 81
Period size: 3 Copynumber: 17.3 Consensus size: 3
11832894 TGTTTACATT
11832904 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TTAA TAA -AA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA
11832949 TTAA TAA T
1 -TAA TAA T
11832957 TTTCAAGTAA
Statistics
Matches: 47, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
2 2 0.04
3 40 0.85
4 5 0.11
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:11835463 original size:66 final size:65
Alignment explanation
Indices: 11835335--11835575 Score: 278
Period size: 66 Copynumber: 3.7 Consensus size: 65
11835325 CAATTAAAAG
* * *
11835335 ATAAATATTATTTTTAAAACTAAAAAAATCAAAAAGATAAAGAAAGCTAAAGATACATAATTAAT
1 ATAAATATTATTTTTAAAA-TAAAAAAAT-AAAAAGGTAAAGAAAGCAAAAGATACACAATTAAT
11835400 TA
64 TA
*
11835402 ATAAATATTATTTTTAAAATAAAAAAAATGAAAAGGTAAAGAAAGCAAAAGATACACAATTAATT
1 ATAAATATTATTTTTAAAAT-AAAAAAATAAAAAGGTAAAGAAAGCAAAAGATACACAATTAATT
11835467 A
65 A
*
11835468 ATAAATATTATTTTT-AAAT-AAAAAAT-GAAAGGTAAAGAAAGCCAAGAA-A-ACACAATTAA-
1 ATAAATATTATTTTTAAAATAAAAAAATAAAAAGGTAAAGAAAG-CAA-AAGATACACAATTAAT
11835527 TA
64 TA
* * * * * *
11835529 GAAAAATATTACTTTTAAATTAAAGAAAACAAAAAAGTTAAGAAAGC
1 -ATAAATATTATTTTTAAAATAAA-AAAATAAAAAGGTAAAGAAAGC
11835576 CCAAAAAAAA
Statistics
Matches: 154, Mismatches: 12, Indels: 18
0.84 0.07 0.10
Matches are distributed among these distances:
61 2 0.01
62 37 0.24
63 14 0.09
64 4 0.03
65 9 0.06
66 61 0.40
67 27 0.18
ACGTcount: A:0.60, C:0.06, G:0.09, T:0.26
Consensus pattern (65 bp):
ATAAATATTATTTTTAAAATAAAAAAATAAAAAGGTAAAGAAAGCAAAAGATACACAATTAATTA
Found at i:11835545 original size:128 final size:132
Alignment explanation
Indices: 11835335--11835575 Score: 296
Period size: 128 Copynumber: 1.8 Consensus size: 132
11835325 CAATTAAAAG
* * *
11835335 ATAAATATTATTTTTAAAACTAAAAAAATCAAAAAGATAAAGAAAGCTAAAGATACATAATTAAT
1 ATAAATATTATTTTTAAAACTAAAAAAAT-AAAAAGATAAAGAAAGCCAAAGAAACACAATTAAT
* * ** *
11835400 TAATAAATATTATTTTTAAAATAAAAAAAATGAAAAGGTAAAGAAAGCAAAAGATACACAATTAA
65 TAAAAAATATTACTTTTAAAATAAAAAAAACAAAAAAGTAAAGAAAGCAAAAGATACACAATTAA
11835465 TTA
130 TTA
* *
11835468 ATAAATATTATTTTT-AAA-T-AAAAAAT-GAAAGGTAAAGAAAGCC-AAGAAAACACAATTAA-
1 ATAAATATTATTTTTAAAACTAAAAAAATAAAAAGATAAAGAAAGCCAAAG-AAACACAATTAAT
* * *
11835527 TAGAAAAATATTACTTTTAAATTAAAGAAAACAAAAAAGTTAAGAAAGC
65 TA-AAAAATATTACTTTTAAAATAAAAAAAACAAAAAAGTAAAGAAAGC
11835576 CCAAAAAAAA
Statistics
Matches: 93, Mismatches: 13, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
127 5 0.05
128 62 0.67
130 7 0.08
131 1 0.01
132 3 0.03
133 15 0.16
ACGTcount: A:0.60, C:0.06, G:0.09, T:0.26
Consensus pattern (132 bp):
ATAAATATTATTTTTAAAACTAAAAAAATAAAAAGATAAAGAAAGCCAAAGAAACACAATTAATT
AAAAAATATTACTTTTAAAATAAAAAAAACAAAAAAGTAAAGAAAGCAAAAGATACACAATTAAT
TA
Found at i:11836359 original size:19 final size:17
Alignment explanation
Indices: 11836331--11836385 Score: 56
Period size: 19 Copynumber: 3.0 Consensus size: 17
11836321 TTTTAAGGAA
*
11836331 TAGTTGAGTTCTTAGTTCT
1 TAGTTTAGTT-TTAGTT-T
*
11836350 TAGTTTAGTTATATGTTT
1 TAGTTTAGTTTTA-GTTT
11836368 TAGTTTTAGTTTTAGTTT
1 TAG-TTTAGTTTTAGTTT
11836386 ATTTAGTCAG
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
18 10 0.32
19 21 0.68
ACGTcount: A:0.18, C:0.04, G:0.18, T:0.60
Consensus pattern (17 bp):
TAGTTTAGTTTTAGTTT
Found at i:11836375 original size:6 final size:6
Alignment explanation
Indices: 11836337--11836385 Score: 55
Period size: 6 Copynumber: 7.8 Consensus size: 6
11836327 GGAATAGTTG
*
11836337 AGTTCTT AGTTCTT AG-TTT AGTTAT ATGTTTT AGTTTT AGTTTT AGTTT
1 AGTT-TT AGTT-TT AGTTTT AGTTTT A-GTTTT AGTTTT AGTTTT AGTTT
11836386 ATTTAGTCAG
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
5 4 0.11
6 20 0.53
7 14 0.37
ACGTcount: A:0.18, C:0.04, G:0.16, T:0.61
Consensus pattern (6 bp):
AGTTTT
Found at i:11850350 original size:16 final size:15
Alignment explanation
Indices: 11850301--11850352 Score: 50
Period size: 16 Copynumber: 3.3 Consensus size: 15
11850291 TATTCCAACT
11850301 AAATAAATAAATCTAA
1 AAATAAA-AAATCTAA
* * *
11850317 ATATAAAATATTTTAA
1 AAATAAAA-AATCTAA
11850333 AAATAAAAAATCTCAA
1 AAATAAAAAATCT-AA
11850349 AAAT
1 AAAT
11850353 TATATTTTTT
Statistics
Matches: 28, Mismatches: 6, Indels: 4
0.74 0.16 0.11
Matches are distributed among these distances:
15 4 0.14
16 24 0.86
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (15 bp):
AAATAAAAAATCTAA
Found at i:11850363 original size:32 final size:32
Alignment explanation
Indices: 11850301--11850366 Score: 80
Period size: 32 Copynumber: 2.1 Consensus size: 32
11850291 TATTCCAACT
*
11850301 AAATAAATAAATCTAAATATAAAATATTTTAA
1 AAATAAATAAATCTAAAAATAAAATATTTTAA
* * *
11850333 AAATAAA-AAATCTCAAAAATTATATTTTTTAA
1 AAATAAATAAATCT-AAAAATAAAATATTTTAA
11850365 AA
1 AA
11850367 CCTACGATTT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
31 6 0.21
32 23 0.79
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.35
Consensus pattern (32 bp):
AAATAAATAAATCTAAAAATAAAATATTTTAA
Found at i:11859297 original size:15 final size:15
Alignment explanation
Indices: 11859264--11859297 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
11859254 TTTTATTCTC
*
11859264 TTGTGGCTTGTGACT
1 TTGTGGCTTGTGACA
*
11859279 TTGTGGCTTGTGGCA
1 TTGTGGCTTGTGACA
11859294 TTGT
1 TTGT
11859298 TGTGTGGTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.06, C:0.12, G:0.35, T:0.47
Consensus pattern (15 bp):
TTGTGGCTTGTGACA
Found at i:11861855 original size:17 final size:17
Alignment explanation
Indices: 11861827--11861862 Score: 56
Period size: 16 Copynumber: 2.1 Consensus size: 17
11861817 TAAAAGAGAT
11861827 TAAAATTATAAT-TAAA
1 TAAAATTATAATATAAA
11861843 TAAAATATATAATATAAA
1 TAAAAT-TATAATATAAA
11861861 TA
1 TA
11861863 GATCTGTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 6 0.33
17 6 0.33
18 6 0.33
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
TAAAATTATAATATAAA
Found at i:11865185 original size:30 final size:30
Alignment explanation
Indices: 11865158--11865214 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
11865148 TCAAAATATG
11865158 ATTTTAA-TCTTTAATTTATATTTAAATAAT
1 ATTTTAACT-TTTAATTTATATTTAAATAAT
* *
11865188 TTTTTAACTTTTAATTTGTATTTAAAT
1 ATTTTAACTTTTAATTTATATTTAAAT
11865215 TAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 23 0.96
31 1 0.04
ACGTcount: A:0.35, C:0.04, G:0.02, T:0.60
Consensus pattern (30 bp):
ATTTTAACTTTTAATTTATATTTAAATAAT
Found at i:11865261 original size:16 final size:16
Alignment explanation
Indices: 11865237--11865271 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
11865227 TAAATTAAGT
*
11865237 ATTTTTTTAAATAAAA
1 ATTTATTTAAATAAAA
*
11865253 ATTTATTTAAATATAA
1 ATTTATTTAAATAAAA
11865269 ATT
1 ATT
11865272 AAAAAATTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (16 bp):
ATTTATTTAAATAAAA
Found at i:11865284 original size:30 final size:27
Alignment explanation
Indices: 11865245--11865320 Score: 89
Period size: 30 Copynumber: 2.7 Consensus size: 27
11865235 GTATTTTTTT
*
11865245 AAATAAAAATTTATTTAAATATAAATTAAA
1 AAATTAAAATTTATTTAAATAT-AA-T-AA
*
11865275 AAATTAAAATTTATTTAGATATAATAA
1 AAATTAAAATTTATTTAAATATAATAA
*
11865302 AAATATAAAATTTAATTAA
1 AAAT-TAAAATTTATTTAA
11865321 GAAAAGTGAA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
27 6 0.15
28 13 0.32
29 2 0.05
30 20 0.49
ACGTcount: A:0.61, C:0.00, G:0.01, T:0.38
Consensus pattern (27 bp):
AAATTAAAATTTATTTAAATATAATAA
Found at i:11865311 original size:28 final size:30
Alignment explanation
Indices: 11865245--11865320 Score: 97
Period size: 28 Copynumber: 2.6 Consensus size: 30
11865235 GTATTTTTTT
11865245 AAATA-AAAATTTATTTAAATATAAATTAA
1 AAATATAAAATTTATTTAAATATAAATTAA
*
11865274 AAA-ATTAAAATTTATTTAGATAT-AA-TAA
1 AAATA-TAAAATTTATTTAAATATAAATTAA
*
11865302 AAATATAAAATTTAATTAA
1 AAATATAAAATTTATTTAA
11865321 GAAAAGTGAA
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
28 19 0.46
29 6 0.15
30 16 0.39
ACGTcount: A:0.61, C:0.00, G:0.01, T:0.38
Consensus pattern (30 bp):
AAATATAAAATTTATTTAAATATAAATTAA
Found at i:11867479 original size:52 final size:52
Alignment explanation
Indices: 11867396--11867500 Score: 124
Period size: 52 Copynumber: 2.0 Consensus size: 52
11867386 TATAAGCATA
* * * * *
11867396 CAAACTTGCTTATTAAGAATTTCTTTCCTCTTAGAATTCTTTTTTTGCAAGT
1 CAAACTTGCTTATTAAGAATTCCTTTCCTCTTAAAAATCTTTTTCTACAAGT
*
11867448 CAAACTTGCCTT-TTAAGAA-TCCATTTTCTCTTAAAAATCTTTTTCTACAAGT
1 CAAACTTG-CTTATTAAGAATTCC-TTTCCTCTTAAAAATCTTTTTCTACAAGT
11867500 C
1 C
11867501 TTTTTGTCCA
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
51 2 0.04
52 40 0.89
53 3 0.07
ACGTcount: A:0.28, C:0.20, G:0.08, T:0.45
Consensus pattern (52 bp):
CAAACTTGCTTATTAAGAATTCCTTTCCTCTTAAAAATCTTTTTCTACAAGT
Found at i:11868991 original size:21 final size:21
Alignment explanation
Indices: 11868961--11869012 Score: 72
Period size: 22 Copynumber: 2.5 Consensus size: 21
11868951 AATATTTTTA
11868961 AATA-TTTATA-TTTAAAAAGT
1 AATATTTTATATTTTAAAAA-T
11868981 AATATTTTATATTTTTAAAAAT
1 AATATTTTATA-TTTTAAAAAT
11869003 AATATTTTAT
1 AATATTTTAT
11869013 CGGATCGGAT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
20 4 0.14
21 6 0.21
22 11 0.38
23 8 0.28
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (21 bp):
AATATTTTATATTTTAAAAAT
Found at i:11870602 original size:86 final size:85
Alignment explanation
Indices: 11870484--11870640 Score: 206
Period size: 86 Copynumber: 1.8 Consensus size: 85
11870474 GAACATGAAC
* ** ** * *
11870484 TTTAATTTAACTAGTTTTTTGGCTAAGGAGCTTTAATTTAATTAATTGGGTCAAGAGAATATACA
1 TTTAATTTAACTAGTTTTTTAGCTAAAAAGCTTTAATTTAATTAATAAGGTCAAAAGAATACACA
11870549 CCAATGAATAAAACTTGGGA
66 CCAATGAATAAAACTTGGGA
* * * *
11870569 TTTAATTTAATTATTTTTTTTAGCTAAAAAGCTTTAATTTAATTAGTAAGGTCAAAAGAATGCAC
1 TTTAATTTAACTA-GTTTTTTAGCTAAAAAGCTTTAATTTAATTAATAAGGTCAAAAGAATACAC
11870634 ACCAATG
65 ACCAATG
11870641 GCCCACTTTT
Statistics
Matches: 60, Mismatches: 11, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
85 12 0.20
86 48 0.80
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.38
Consensus pattern (85 bp):
TTTAATTTAACTAGTTTTTTAGCTAAAAAGCTTTAATTTAATTAATAAGGTCAAAAGAATACACA
CCAATGAATAAAACTTGGGA
Found at i:11871426 original size:34 final size:34
Alignment explanation
Indices: 11871374--11871440 Score: 80
Period size: 34 Copynumber: 2.0 Consensus size: 34
11871364 AAGCAACATT
* * *
11871374 CTTTTCGGAAACCTATTTTTAAGAAGATTTGAGA
1 CTTTTCGGAAACCAATTTTGAAGAAGATGTGAGA
* * *
11871408 CTTTTTGGACACCAATTTTGGAGAAGATGTGAG
1 CTTTTCGGAAACCAATTTTGAAGAAGATGTGAG
11871441 GCTTCTTTAA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
34 27 1.00
ACGTcount: A:0.30, C:0.12, G:0.22, T:0.36
Consensus pattern (34 bp):
CTTTTCGGAAACCAATTTTGAAGAAGATGTGAGA
Found at i:11871493 original size:34 final size:34
Alignment explanation
Indices: 11871455--11871540 Score: 79
Period size: 34 Copynumber: 2.6 Consensus size: 34
11871445 CTTTAAAAAT
*
11871455 CATTTTCAAAAAGACTTAAGGGCTT-TTGAAAACC
1 CATTTTCAAAAAGACTTAA-GACTTCTTGAAAACC
* * * *
11871489 CATTTCCGAGAAA-ACTTAAGACTTCTTGGAAACT
1 CATTTTC-AAAAAGACTTAAGACTTCTTGAAAACC
*
11871523 CATTTTCGAAAAG-CTTAA
1 CATTTTCAAAAAGACTTAA
11871541 AATCCATTGT
Statistics
Matches: 41, Mismatches: 8, Indels: 7
0.73 0.14 0.12
Matches are distributed among these distances:
33 12 0.29
34 25 0.61
35 4 0.10
ACGTcount: A:0.37, C:0.19, G:0.14, T:0.30
Consensus pattern (34 bp):
CATTTTCAAAAAGACTTAAGACTTCTTGAAAACC
Found at i:11872637 original size:1 final size:1
Alignment explanation
Indices: 11872626--11872665 Score: 53
Period size: 1 Copynumber: 40.0 Consensus size: 1
11872616 NNNNNNNNNN
* * *
11872626 AAAATAAAAAAAAAAAAACAAAAAAAAAAAAAATAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
11872666 GTAAAGGTCG
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
1 33 1.00
ACGTcount: A:0.93, C:0.03, G:0.00, T:0.05
Consensus pattern (1 bp):
A
Found at i:11872663 original size:14 final size:14
Alignment explanation
Indices: 11872626--11872665 Score: 62
Period size: 15 Copynumber: 2.8 Consensus size: 14
11872616 NNNNNNNNNN
11872626 AAAATAAAAAAAAA
1 AAAATAAAAAAAAA
*
11872640 AAAACAAAAAAAAAA
1 AAAA-TAAAAAAAAA
11872655 AAAATAAAAAA
1 AAAATAAAAAA
11872666 GTAAAGGTCG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
14 10 0.43
15 13 0.57
ACGTcount: A:0.93, C:0.03, G:0.00, T:0.05
Consensus pattern (14 bp):
AAAATAAAAAAAAA
Found at i:11872670 original size:8 final size:8
Alignment explanation
Indices: 11872626--11872670 Score: 51
Period size: 7 Copynumber: 6.0 Consensus size: 8
11872616 NNNNNNNNNN
11872626 AAAAT-AA
1 AAAATAAA
11872633 AAAA-AAA
1 AAAATAAA
*
11872640 AAAACAAA
1 AAAATAAA
11872648 AAAA-AAA
1 AAAATAAA
11872655 AAAATAAA
1 AAAATAAA
*
11872663 AAAGTAAA
1 AAAATAAA
11872671 GGTCGAGTTG
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
7 17 0.50
8 17 0.50
ACGTcount: A:0.89, C:0.02, G:0.02, T:0.07
Consensus pattern (8 bp):
AAAATAAA
Found at i:11872850 original size:21 final size:20
Alignment explanation
Indices: 11872826--11872944 Score: 64
Period size: 21 Copynumber: 5.5 Consensus size: 20
11872816 TTTCTTTTTT
11872826 TTTTTTTTTATTTTTTATTTA
1 TTTTTTTTTATTTTTTA-TTA
* * *
11872847 TTTTTATTTATATTTTA-CA
1 TTTTTTTTTATTTTTTATTA
11872866 TTTTTATTTT-TATTTTTATTA
1 TTTTT-TTTTAT-TTTTTATTA
* *
11872887 TTATTATTTTATATATGTATATATA
1 TT-TT-TTTT-TAT-TTTTTAT-TA
11872912 TTTTTTTCTT-TTCTTTTATTA
1 TTTTTTT-TTATT-TTTTATTA
11872933 TTATTATTTTTA
1 TT-TT-TTTTTA
11872945 GGGATTTATG
Statistics
Matches: 75, Mismatches: 10, Indels: 24
0.69 0.09 0.22
Matches are distributed among these distances:
19 7 0.09
20 8 0.11
21 23 0.31
22 14 0.19
23 9 0.12
24 10 0.13
25 4 0.05
ACGTcount: A:0.22, C:0.03, G:0.01, T:0.75
Consensus pattern (20 bp):
TTTTTTTTTATTTTTTATTA
Found at i:11872852 original size:6 final size:6
Alignment explanation
Indices: 11872814--11872891 Score: 81
Period size: 6 Copynumber: 13.3 Consensus size: 6
11872804 AGTCTGTATT
* * *
11872814 TTTTTC TTTTT- TTTTT- TTTTTA TTTTT- TATTTA TTTTTA TTTATA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
* *
11872859 TTTTACA TTTTTA TTTTTA TTTTTA TTATTA TT
1 TTTT-TA TTTTTA TTTTTA TTTTTA TTTTTA TT
11872892 ATTTTATATA
Statistics
Matches: 62, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
5 14 0.23
6 43 0.69
7 5 0.08
ACGTcount: A:0.17, C:0.03, G:0.00, T:0.81
Consensus pattern (6 bp):
TTTTTA
Found at i:11872889 original size:3 final size:3
Alignment explanation
Indices: 11872869--11873011 Score: 66
Period size: 3 Copynumber: 46.7 Consensus size: 3
11872859 TTTTACATTT
* *
11872869 TTA TTT TTA TTT TTA TTA TTA TTA TT- TTA TATA TGTA -TA TATA TT-
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA T-TA TTA T-TA TTA
* * * * **
11872914 TTT TTC TT- TTC TT- TTA TTA TTA TTA TTT TTA GGGA TTTA TGTA TTTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA -TTA T-TA -TTA
*
11872961 TTA ATA TGTA TATA TCT- TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-
1 TTA TTA T-TA T-TA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
11873007 TTA TT
1 TTA TT
11873012 TTTTTTCTTT
Statistics
Matches: 110, Mismatches: 17, Indels: 26
0.72 0.11 0.17
Matches are distributed among these distances:
2 13 0.12
3 75 0.68
4 21 0.19
5 1 0.01
ACGTcount: A:0.27, C:0.02, G:0.04, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:11872894 original size:46 final size:45
Alignment explanation
Indices: 11872820--11872944 Score: 137
Period size: 46 Copynumber: 2.7 Consensus size: 45
11872810 TATTTTTTTC
* * *
11872820 TTTTTTTTTTTTTTTATTTTTTATTTATTTTTATTTATAT-TTTACA
1 TTTTTTTTTTTTTTTA-TTATTA-TTATTTTTATATATATATATACA
* *
11872866 TTTTTATTTTTATTTTTATTATTATTA-TTTTATATATGTATATATA
1 TTTTT-TTTTT-TTTTTATTATTATTATTTTTATATATATATATACA
11872912 TTTTTTTCTTTTCTTTTATTATTATTATTTTTA
1 TTTTTTT-TTTT-TTTTATTATTATTATTTTTA
11872945 GGGATTTATG
Statistics
Matches: 68, Mismatches: 5, Indels: 11
0.81 0.06 0.13
Matches are distributed among these distances:
45 13 0.19
46 34 0.50
47 15 0.22
48 6 0.09
ACGTcount: A:0.21, C:0.02, G:0.01, T:0.76
Consensus pattern (45 bp):
TTTTTTTTTTTTTTTATTATTATTATTTTTATATATATATATACA
Found at i:11873129 original size:16 final size:15
Alignment explanation
Indices: 11873102--11873142 Score: 64
Period size: 16 Copynumber: 2.7 Consensus size: 15
11873092 TTTCGTTTGA
*
11873102 TTTTTTTCTTTTATT
1 TTTTTTTTTTTTATT
11873117 TTTTTTATTTTTTATT
1 TTTTTT-TTTTTTATT
11873133 TTTTTTTTTT
1 TTTTTTTTTT
11873143 AATTTATCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
15 10 0.42
16 14 0.58
ACGTcount: A:0.07, C:0.02, G:0.00, T:0.90
Consensus pattern (15 bp):
TTTTTTTTTTTTATT
Found at i:11873147 original size:14 final size:14
Alignment explanation
Indices: 11873101--11873147 Score: 58
Period size: 14 Copynumber: 3.3 Consensus size: 14
11873091 TTTTCGTTTG
*
11873101 ATTTTTTTCTTTTA
1 ATTTTTTTTTTTTA
* *
11873115 TTTTTTTTATTTTTT
1 ATTTTTTT-TTTTTA
11873130 ATTTTTTTTTTTTA
1 ATTTTTTTTTTTTA
11873144 ATTT
1 ATTT
11873148 ATCTGACTGG
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
14 16 0.59
15 11 0.41
ACGTcount: A:0.13, C:0.02, G:0.00, T:0.85
Consensus pattern (14 bp):
ATTTTTTTTTTTTA
Found at i:11873147 original size:21 final size:21
Alignment explanation
Indices: 11873103--11873143 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
11873093 TTCGTTTGAT
*
11873103 TTTTTTCTTTTATTTTTTTTA
1 TTTTTTATTTTATTTTTTTTA
11873124 TTTTTTATTTT-TTTTTTTTA
1 TTTTTTATTTTATTTTTTTTA
11873144 ATTTATCTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.10, C:0.02, G:0.00, T:0.88
Consensus pattern (21 bp):
TTTTTTATTTTATTTTTTTTA
Found at i:11873423 original size:9 final size:10
Alignment explanation
Indices: 11873400--11873424 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
11873390 TAGCAAAAAT
11873400 TTTTTGGAGA
1 TTTTTGGAGA
11873410 TTTTTGGAGA
1 TTTTTGGAGA
11873420 TTTTT
1 TTTTT
11873425 TTCTGTGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.16, C:0.00, G:0.24, T:0.60
Consensus pattern (10 bp):
TTTTTGGAGA
Found at i:11874022 original size:11 final size:11
Alignment explanation
Indices: 11874006--11874061 Score: 64
Period size: 11 Copynumber: 5.4 Consensus size: 11
11873996 TTAATATCCT
11874006 TTTTATCTTTA
1 TTTTATCTTTA
*
11874017 TTTTATTTTTA
1 TTTTATCTTTA
*
11874028 TTTTATTTTTA
1 TTTTATCTTTA
*
11874039 CTTT-TCTTTA
1 TTTTATCTTTA
11874049 TTTT-T-TTTA
1 TTTTATCTTTA
11874058 TTTT
1 TTTT
11874062 TTTATTTTTA
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
9 8 0.20
10 9 0.22
11 24 0.59
ACGTcount: A:0.14, C:0.05, G:0.00, T:0.80
Consensus pattern (11 bp):
TTTTATCTTTA
Found at i:11874023 original size:5 final size:5
Alignment explanation
Indices: 11874006--11874083 Score: 65
Period size: 6 Copynumber: 15.4 Consensus size: 5
11873996 TTAATATCCT
*
11874006 TTTTA TCTTTA TTTTA TTTTTA TTTTA TTTTTA CTTTT- CTTTA TTTT-
1 TTTTA T-TTTA TTTTA -TTTTA TTTTA -TTTTA -TTTTA TTTTA TTTTA
*
11874053 TTTTA -TTT- TTTTA TTTTTA TTTTG TTTTA TT
1 TTTTA TTTTA TTTTA -TTTTA TTTTA TTTTA TT
11874084 ATTCTATTTG
Statistics
Matches: 60, Mismatches: 5, Indels: 16
0.74 0.06 0.20
Matches are distributed among these distances:
4 13 0.22
5 23 0.38
6 24 0.40
ACGTcount: A:0.14, C:0.04, G:0.01, T:0.81
Consensus pattern (5 bp):
TTTTA
Found at i:11874027 original size:17 final size:16
Alignment explanation
Indices: 11874005--11874083 Score: 78
Period size: 17 Copynumber: 5.1 Consensus size: 16
11873995 TTTAATATCC
11874005 TTTTTATCTTTATTTTA
1 TTTTTAT-TTTATTTTA
11874022 TTTTTATTTTATTTTTA
1 TTTTTATTTTA-TTTTA
* *
11874039 CTTTT-CTTTA-TTT-
1 TTTTTATTTTATTTTA
11874052 TTTTTA-TTT-TTTTA
1 TTTTTATTTTATTTTA
*
11874066 TTTTTATTTTGTTTTA
1 TTTTTATTTTATTTTA
11874082 TT
1 TT
11874084 ATTCTATTTG
Statistics
Matches: 53, Mismatches: 3, Indels: 13
0.77 0.04 0.19
Matches are distributed among these distances:
13 10 0.19
14 9 0.17
15 3 0.06
16 15 0.28
17 16 0.30
ACGTcount: A:0.14, C:0.04, G:0.01, T:0.81
Consensus pattern (16 bp):
TTTTTATTTTATTTTA
Found at i:11874085 original size:27 final size:27
Alignment explanation
Indices: 11874005--11874086 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
11873995 TTTAATATCC
*
11874005 TTTTTATCTTTATTTTATTTTTATT-TTA
1 TTTTTATTTTTA-TTT-TTTTTATTATTA
* * *
11874033 TTTTTACTTTTCTTTATTTTTTTTATT-
1 TTTTTATTTTTATTT-TTTTTATTATTA
11874060 TTTTTATTTTTATTTTGTTTTATTATT
1 TTTTTATTTTTATTTT-TTTTATTATT
11874087 CTATTTGCTT
Statistics
Matches: 45, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
26 1 0.02
27 33 0.73
28 11 0.24
ACGTcount: A:0.15, C:0.04, G:0.01, T:0.80
Consensus pattern (27 bp):
TTTTTATTTTTATTTTTTTTATTATTA
Found at i:11874098 original size:27 final size:23
Alignment explanation
Indices: 11874005--11874098 Score: 68
Period size: 25 Copynumber: 3.9 Consensus size: 23
11873995 TTTAATATCC
*
11874005 TTTTTATCTTTATTT-TATT-TTT
1 TTTTTATTTTTATTTCT-TTATTT
*
11874027 ATTTTATTTTTACTTTTCTTTATTT
1 TTTTTATTTTTA--TTTCTTTATTT
*
11874052 TTTTTATTTTT-TTATTTTTATTT
1 TTTTTATTTTTATT-TCTTTATTT
11874075 TGTTTTATTATTCTATTTGCTTTA
1 T-TTTTATT-TT-TATTT-CTTTA
11874099 AATAAAAATA
Statistics
Matches: 57, Mismatches: 5, Indels: 15
0.74 0.06 0.19
Matches are distributed among these distances:
22 12 0.21
23 9 0.16
24 12 0.21
25 16 0.28
26 2 0.04
27 6 0.11
ACGTcount: A:0.15, C:0.05, G:0.02, T:0.78
Consensus pattern (23 bp):
TTTTTATTTTTATTTCTTTATTT
Found at i:11874172 original size:59 final size:59
Alignment explanation
Indices: 11874108--11874320 Score: 279
Period size: 59 Copynumber: 3.6 Consensus size: 59
11874098 AAATAAAAAT
* * *
11874108 AAAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTAAAAAGAAAATTTC
1 AAAAAAAGA-ATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
* * * *
11874168 AAAAAAAGAGTTTTTGAGGAAAAGCTGAAAGTATCAATTTTCCTTAAAAATAAAA-AT-
1 AAAAAAAGAATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
* * * *
11874225 AAAAAAAAAATTTTT-AGGGAAAAGTTTAAAGTATCAGTTTTCCTTAAAAATAAAATTTC
1 AAAAAAAGAATTTTTGA-GAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
*
11874284 AAAAAAAGAGTTTTTGAGAAAAAGTTGAAAGTATCAA
1 AAAAAAAGAATTTTTGAGAAAAAGTTGAAAGTATCAA
11874321 AAAAAGAGTT
Statistics
Matches: 131, Mismatches: 18, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
56 1 0.01
57 48 0.37
58 2 0.02
59 71 0.54
60 9 0.07
ACGTcount: A:0.51, C:0.06, G:0.13, T:0.31
Consensus pattern (59 bp):
AAAAAAAGAATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
Found at i:11874256 original size:116 final size:117
Alignment explanation
Indices: 11874098--11874320 Score: 360
Period size: 116 Copynumber: 1.9 Consensus size: 117
11874088 TATTTGCTTT
*
11874098 AAATAAAAATAAAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTAAAAAGAAA
1 AAATAAAAATAAAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAAGAAA
*
11874163 ATTTCAAAAAAAGAGTTTTTGAGGAAAAGCTGAAAGTATCAATTTTCCTTAA
66 ATTTCAAAAAAAGAGTTTTTGAGAAAAAGCTGAAAGTATCAATTTTCCTTAA
* * * *
11874215 AAATAAAAATAAAAAAAAA-ATTTTT-AGGGAAAAGTTTAAAGTATCAGTTTTCCTTAAAAATAA
1 AAATAAAAATAAAAAAAAATATTTTTGA-GAAAAAGTTGAAAGTATCAATTTTCCTTAAAAAGAA
*
11874278 AATTTCAAAAAAAGAGTTTTTGAGAAAAAGTTGAAAGTATCAA
65 AATTTCAAAAAAAGAGTTTTTGAGAAAAAGCTGAAAGTATCAA
11874321 AAAAAGAGTT
Statistics
Matches: 98, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
115 1 0.01
116 78 0.80
117 19 0.19
ACGTcount: A:0.52, C:0.05, G:0.12, T:0.30
Consensus pattern (117 bp):
AAATAAAAATAAAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAAGAAA
ATTTCAAAAAAAGAGTTTTTGAGAAAAAGCTGAAAGTATCAATTTTCCTTAA
Found at i:11874327 original size:35 final size:35
Alignment explanation
Indices: 11874282--11874355 Score: 148
Period size: 35 Copynumber: 2.1 Consensus size: 35
11874272 AAATAAAATT
11874282 TCAAAAAAAGAGTTTTTGAGAAAAAGTTGAAAGTA
1 TCAAAAAAAGAGTTTTTGAGAAAAAGTTGAAAGTA
11874317 TCAAAAAAAGAGTTTTTGAGAAAAAGTTGAAAGTA
1 TCAAAAAAAGAGTTTTTGAGAAAAAGTTGAAAGTA
11874352 TCAA
1 TCAA
11874356 TTTTTCTTAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 39 1.00
ACGTcount: A:0.51, C:0.04, G:0.19, T:0.26
Consensus pattern (35 bp):
TCAAAAAAAGAGTTTTTGAGAAAAAGTTGAAAGTA
Found at i:11874342 original size:94 final size:94
Alignment explanation
Indices: 11874244--11874414 Score: 272
Period size: 94 Copynumber: 1.8 Consensus size: 94
11874234 ATTTTTAGGG
* * *
11874244 AAAAGTTTAAAGTATCAGTTTTCCTTAAAAATAAAATTTCAAAAAAAGAG-TTTTTGAGAAAAAG
1 AAAAGTTGAAAGTATCAATTTTCCTTAAAAAGAAAATTTCAAAAAAAG-GTTTTTTGAGAAAAAG
11874308 TTGAAAGTATCAAAAAAAGAGTTTTTGAGA
65 TTGAAAGTATCAAAAAAAGAGTTTTTGAGA
* * *
11874338 AAAAGTTGAAAGTATCAATTTTTCTTAAAAAGAAAATTTTAAAAAAAGGTTTTTTGAGGAAAAGT
1 AAAAGTTGAAAGTATCAATTTTCCTTAAAAAGAAAATTTCAAAAAAAGGTTTTTTGAGAAAAAGT
11874403 TGAAAGTATCAA
66 TGAAAGTATCAA
11874415 TTTTCCTTGA
Statistics
Matches: 70, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
93 1 0.01
94 69 0.99
ACGTcount: A:0.49, C:0.05, G:0.15, T:0.32
Consensus pattern (94 bp):
AAAAGTTGAAAGTATCAATTTTCCTTAAAAAGAAAATTTCAAAAAAAGGTTTTTTGAGAAAAAGT
TGAAAGTATCAAAAAAAGAGTTTTTGAGA
Found at i:11874437 original size:60 final size:59
Alignment explanation
Indices: 11874319--11874656 Score: 405
Period size: 60 Copynumber: 5.7 Consensus size: 59
11874309 TGAAAGTATC
* * * **
11874319 AAAAAAAGAGTTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTAAAAAGAAAATTTT
1 AAAAAAAGATTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAATTAAAATTTT
* *
11874378 AAAAAAAGGTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTT
1 AAAAAAAGATTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT-AAAATTAAAATTTT
* * *
11874438 CAAAAAA-ATATTTTTG-GGTAAAAGTTGAAAGTATCAATTTTTCTTAAAATTAAATTTTT
1 AAAAAAAGAT-TTTTTGAGG-AAAAGTTGAAAGTATCAATTTTCCTTAAAATTAAAATTTT
* * *
11874497 AAAAAAATCAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAATTTT
1 AAAAAAA-GATTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAATTAAAATTTT
* * ** * *
11874556 CAAAAAAATAAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAGTTTC
1 -AAAAAAA-GATTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAATTAAAATTTT
* *
11874617 AAAAGAATATTTTTTG-GGAAAAGTTGAAAGTATCAATTTT
1 AAAAAAAGATTTTTTGAGGAAAAGTTGAAAGTATCAATTTT
11874657 TCCTGCGCAA
Statistics
Matches: 246, Mismatches: 25, Indels: 17
0.85 0.09 0.06
Matches are distributed among these distances:
58 24 0.10
59 75 0.30
60 139 0.57
61 8 0.03
ACGTcount: A:0.45, C:0.06, G:0.13, T:0.36
Consensus pattern (59 bp):
AAAAAAAGATTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAATTAAAATTTT
Found at i:11874541 original size:120 final size:116
Alignment explanation
Indices: 11874317--11874656 Score: 457
Period size: 120 Copynumber: 2.9 Consensus size: 116
11874307 GTTGAAAGTA
* * **
11874317 TCAAAAAAAGAGTTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTAAAAAGAAAATTTTAAAA
1 TCAAAAAAATA-TTTTTG-GGAAAAGTTGAAAGTATCAATTTTTCTTAAAATTAAAATTTTAAAA
** *
11874382 AAAGGTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTT
64 AAATATTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT--AAATTT
*
11874437 TCAAAAAAATATTTTTGGGTAAAAGTTGAAAGTATCAATTTTTCTTAAAATTAAATTTTTAAAAA
1 TCAAAAAAATATTTTTGGG-AAAAGTTGAAAGTATCAATTTTTCTTAAAATTAAAATTTTAAAAA
*
11874502 AATCAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTT
65 AAT-ATTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTT
* ** * *
11874555 TCAAAAAAATAAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAGTTTCAAA
1 TCAAAAAAAT--ATTTTTG-GGAAAAGTTGAAAGTATCAATTTTTCTTAAAATTAAAATTTTAAA
*
11874620 AGAATATTTTTTG-GGAAAAGTTGAAAGTATCAATTTT
63 AAAATATTTTTTGAGGAAAAGTTGAAAGTATCAATTTT
11874657 TCCTGCGCAA
Statistics
Matches: 199, Mismatches: 16, Indels: 12
0.88 0.07 0.05
Matches are distributed among these distances:
118 41 0.21
119 57 0.29
120 99 0.50
121 2 0.01
ACGTcount: A:0.45, C:0.06, G:0.13, T:0.36
Consensus pattern (116 bp):
TCAAAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTTCTTAAAATTAAAATTTTAAAAAA
ATATTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTT
Found at i:11883149 original size:70 final size:70
Alignment explanation
Indices: 11883007--11883153 Score: 176
Period size: 70 Copynumber: 2.1 Consensus size: 70
11882997 TAAAGAAGTC
* * *
11883007 TTATTTATTTTTCAAAAGTCTTTGAGCCTATGCTTAGATGAGCTTTATTTTTCAAAATTATTGAG
1 TTATTTATTTTTCAAAAATCATTGAGCCTATGATTAGATGAGCTTTATTTTTCAAAATTATTGAG
*
11883072 AAGCT
66 AACCT
* *
11883077 TTATTTATTTTTCAAAAATCATTGAGCCTCT-ATTGAGATGAGCTTTTCTATTTTTCAAAA-TGT
1 TTATTTATTTTTCAAAAATCATTGAGCCTATGATT-AGATGAGC--TT-TATTTTTCAAAATTAT
11883140 T-A-AACCT
62 TGAGAACCT
11883147 TTATTTA
1 TTATTTA
11883154 GAGGAGTTTT
Statistics
Matches: 67, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
69 2 0.03
70 47 0.70
71 1 0.01
72 5 0.07
73 12 0.18
ACGTcount: A:0.29, C:0.12, G:0.12, T:0.47
Consensus pattern (70 bp):
TTATTTATTTTTCAAAAATCATTGAGCCTATGATTAGATGAGCTTTATTTTTCAAAATTATTGAG
AACCT
Found at i:11883366 original size:13 final size:13
Alignment explanation
Indices: 11883348--11883387 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
11883338 GTTTTTGTTC
11883348 ATAAAAATAAAAA
1 ATAAAAATAAAAA
11883361 ATAAAAAT-AAAA
1 ATAAAAATAAAAA
* *
11883373 AGAAAAAGAAAAA
1 ATAAAAATAAAAA
11883386 AT
1 AT
11883388 CAAATGGTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
12 10 0.43
13 13 0.57
ACGTcount: A:0.82, C:0.00, G:0.05, T:0.12
Consensus pattern (13 bp):
ATAAAAATAAAAA
Found at i:11890424 original size:31 final size:31
Alignment explanation
Indices: 11890389--11890447 Score: 73
Period size: 31 Copynumber: 1.9 Consensus size: 31
11890379 ATTGTTAGTG
*
11890389 AATCAAATAAAAACAACTCATTAATGAGAGA
1 AATCAAATAAAAACAACCCATTAATGAGAGA
* * * *
11890420 AATCAGATGATAACACCCCATTAATGAG
1 AATCAAATAAAAACAACCCATTAATGAG
11890448 TAAATTTTTT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 23 1.00
ACGTcount: A:0.51, C:0.17, G:0.12, T:0.20
Consensus pattern (31 bp):
AATCAAATAAAAACAACCCATTAATGAGAGA
Found at i:11894954 original size:21 final size:20
Alignment explanation
Indices: 11894930--11894976 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 20
11894920 GTTTTGTGCA
*
11894930 ATTTTTTTTTTGTTTTCTTG-C
1 ATTTTCTTTTT-TTTT-TTGTC
11894951 ATTTGTCTTTTTTTTTTTGTC
1 ATTT-TCTTTTTTTTTTTGTC
11894972 ATTTT
1 ATTTT
11894977 GTTATTTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
20 4 0.17
21 13 0.57
22 6 0.26
ACGTcount: A:0.06, C:0.09, G:0.09, T:0.77
Consensus pattern (20 bp):
ATTTTCTTTTTTTTTTTGTC
Found at i:11895580 original size:13 final size:13
Alignment explanation
Indices: 11895562--11895587 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
11895552 ATTTATATAT
11895562 TTTTTAATATTAA
1 TTTTTAATATTAA
11895575 TTTTTAATATTAA
1 TTTTTAATATTAA
11895588 AAATATTAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
TTTTTAATATTAA
Found at i:11895630 original size:23 final size:23
Alignment explanation
Indices: 11895584--11895631 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
11895574 ATTTTTAATA
* *
11895584 TTAAAAATATTAAAATCGATTTT
1 TTAAAAATATAAAAAACGATTTT
*
11895607 TTAAAAATATAAAAAAC-ATATT
1 TTAAAAATATAAAAAACGATTTT
11895629 TTA
1 TTA
11895632 TATTAATAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
22 7 0.32
23 15 0.68
ACGTcount: A:0.54, C:0.04, G:0.02, T:0.40
Consensus pattern (23 bp):
TTAAAAATATAAAAAACGATTTT
Found at i:11903079 original size:4 final size:4
Alignment explanation
Indices: 11903062--11903098 Score: 65
Period size: 4 Copynumber: 9.2 Consensus size: 4
11903052 TATCTAACAC
*
11903062 ACAT ACAC ACAT ACAT ACAT ACAT ACAT ACAT ACAT A
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT A
11903099 GTTATATGTA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.51, C:0.27, G:0.00, T:0.22
Consensus pattern (4 bp):
ACAT
Found at i:11904511 original size:3 final size:3
Alignment explanation
Indices: 11904503--11904560 Score: 82
Period size: 3 Copynumber: 18.7 Consensus size: 3
11904493 AATTTTTCAC
11904503 TAA TAA TAA TAA TAA TAAA TAA TAA TAA GT-A TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA T-AA TAA TAA TAA -TAA TAA TAA TAA TAA TAA
11904549 TAA TAAA TAA TA
1 TAA T-AA TAA TA
11904561 TTCACTTTAG
Statistics
Matches: 51, Mismatches: 0, Indels: 8
0.86 0.00 0.14
Matches are distributed among these distances:
2 1 0.02
3 43 0.84
4 7 0.14
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:11905188 original size:16 final size:17
Alignment explanation
Indices: 11905167--11905201 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
11905157 ATATTTAAAT
*
11905167 AATAATATAAATAA-TA
1 AATAATAAAAATAAGTA
11905183 AATAATAAAAATAAGTA
1 AATAATAAAAATAAGTA
11905200 AA
1 AA
11905202 AAACTATCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (17 bp):
AATAATAAAAATAAGTA
Found at i:11925647 original size:5 final size:5
Alignment explanation
Indices: 11925637--11925664 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
11925627 GGATAAAAGG
11925637 ATTTT ATTTT ATTTT ATTTT ATTTT ATT
1 ATTTT ATTTT ATTTT ATTTT ATTTT ATT
11925665 CAGAATGGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (5 bp):
ATTTT
Found at i:11927600 original size:25 final size:22
Alignment explanation
Indices: 11927572--11927620 Score: 53
Period size: 25 Copynumber: 2.1 Consensus size: 22
11927562 ACCTATTAAC
11927572 TTTTAGGAAAAGATTTAGATGAAGT
1 TTTTAGGAAAA-ATTT-G-TGAAGT
* *
11927597 TTTTGGGTAAAATTTGTGAAGT
1 TTTTAGGAAAAATTTGTGAAGT
11927619 TT
1 TT
11927621 CCTTTTAGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
22 8 0.36
23 1 0.05
24 4 0.18
25 9 0.41
ACGTcount: A:0.33, C:0.00, G:0.24, T:0.43
Consensus pattern (22 bp):
TTTTAGGAAAAATTTGTGAAGT
Found at i:11927720 original size:10 final size:10
Alignment explanation
Indices: 11927705--11927734 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
11927695 TTAAAAGTGC
11927705 AAAATTTTGA
1 AAAATTTTGA
*
11927715 AAAATTTTTA
1 AAAATTTTGA
11927725 AAAATTTTGA
1 AAAATTTTGA
11927735 TATATATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.50, C:0.00, G:0.07, T:0.43
Consensus pattern (10 bp):
AAAATTTTGA
Found at i:11928180 original size:3 final size:3
Alignment explanation
Indices: 11928172--11928197 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
11928162 AATGGATCCC
11928172 TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TA
11928198 AAGAAAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:11928304 original size:3 final size:3
Alignment explanation
Indices: 11928296--11928338 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
11928286 AAATACTTTT
11928296 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
11928339 AACTTAGCTC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:11929732 original size:2 final size:2
Alignment explanation
Indices: 11929727--11929755 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
11929717 AAAAAACTAC
11929727 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
11929756 TTTTTGGGTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:11930548 original size:15 final size:15
Alignment explanation
Indices: 11930528--11930556 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
11930518 ATATAGCATG
11930528 AACATCGATAAGATA
1 AACATCGATAAGATA
11930543 AACATCGATAAGAT
1 AACATCGATAAGAT
11930557 GCTGACATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.52, C:0.14, G:0.14, T:0.21
Consensus pattern (15 bp):
AACATCGATAAGATA
Found at i:11930614 original size:10 final size:9
Alignment explanation
Indices: 11930601--11930740 Score: 93
Period size: 9 Copynumber: 14.4 Consensus size: 9
11930591 CATCAGTATA
11930601 AAAAAATTT
1 AAAAAATTT
11930610 AAAAAATTT
1 AAAAAATTT
*
11930619 -TAAAATTCT
1 AAAAAATT-T
*
11930628 AAAAATTTT
1 AAAAAATTT
*
11930637 AAATAATTCT
1 AAAAAATT-T
11930647 AAAAAATTTT
1 AAAAAA-TTT
* *
11930657 GAATAATTCT
1 AAAAAATT-T
11930667 AAAAAAATTCTT
1 -AAAAAA-T-TT
*
11930679 AAAAATTTT
1 AAAAAATTT
*
11930688 GAAAAATTAT
1 AAAAAATT-T
11930698 AAAAAATTTT
1 AAAAAA-TTT
11930708 AAAAAATTATT
1 AAAAAA-T-TT
*
11930719 AAAAAATTC
1 AAAAAATTT
*
11930728 AAAAATTTT
1 AAAAAATTT
11930737 AAAA
1 AAAA
11930741 TTCTCAAAAA
Statistics
Matches: 103, Mismatches: 17, Indels: 22
0.73 0.12 0.15
Matches are distributed among these distances:
8 6 0.06
9 39 0.38
10 34 0.33
11 21 0.20
12 2 0.02
13 1 0.01
ACGTcount: A:0.59, C:0.04, G:0.01, T:0.36
Consensus pattern (9 bp):
AAAAAATTT
Found at i:11930653 original size:20 final size:19
Alignment explanation
Indices: 11930602--11930751 Score: 141
Period size: 20 Copynumber: 7.8 Consensus size: 19
11930592 ATCAGTATAA
11930602 AAAAATT-TAAAAAATTTT
1 AAAAATTCTAAAAAATTTT
11930620 -AAAATTCT-AAAAATTTT
1 AAAAATTCTAAAAAATTTT
11930637 AAATAATTCTAAAAAATTTT
1 AAA-AATTCTAAAAAATTTT
*
11930657 GAATAATTCTAAAAAAATTCTT
1 -AAAAATTCT-AAAAAATT-TT
* * *
11930679 AAAAATTTTGAAAAATTATA
1 AAAAATTCTAAAAAATT-TT
*
11930699 AAAAATTTTAAAAAATTATT
1 AAAAATTCTAAAAAATT-TT
11930719 AAAAAATTC--AAAAATTTT
1 -AAAAATTCTAAAAAATTTT
11930737 -AAAATTCTCAAAAAA
1 AAAAATTCT-AAAAAA
11930752 AATTCTGAAA
Statistics
Matches: 112, Mismatches: 9, Indels: 21
0.79 0.06 0.15
Matches are distributed among these distances:
16 7 0.06
17 15 0.13
18 5 0.04
19 18 0.16
20 41 0.37
21 24 0.21
22 2 0.02
ACGTcount: A:0.58, C:0.05, G:0.01, T:0.36
Consensus pattern (19 bp):
AAAAATTCTAAAAAATTTT
Found at i:11930677 original size:31 final size:31
Alignment explanation
Indices: 11930620--11930732 Score: 117
Period size: 31 Copynumber: 3.7 Consensus size: 31
11930610 AAAAAATTTT
* * *
11930620 AAAATTCT-AAAAATT-TTAAATAATTCTAA
1 AAAATTTTGAAAAATTCTAAAAAAATTCTAA
* *
11930649 AAAATTTTGAATAATTCTAAAAAAATTCTTA
1 AAAATTTTGAAAAATTCTAAAAAAATTCTAA
* *
11930680 AAAATTTTGAAAAATTAT-AAAAAATTTTAA
1 AAAATTTTGAAAAATTCTAAAAAAATTCTAA
*
11930710 AAAATTATTAAAAAATTC-AAAAA
1 AAAATT-TTGAAAAATTCTAAAAA
11930733 TTTTAAAATT
Statistics
Matches: 69, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
29 7 0.10
30 22 0.32
31 40 0.58
ACGTcount: A:0.58, C:0.04, G:0.02, T:0.35
Consensus pattern (31 bp):
AAAATTTTGAAAAATTCTAAAAAAATTCTAA
Found at i:11930750 original size:10 final size:10
Alignment explanation
Indices: 11930601--11930766 Score: 105
Period size: 10 Copynumber: 16.8 Consensus size: 10
11930591 CATCAGTATA
11930601 AAAAAATT-T
1 AAAAAATTCT
11930610 AAAAAATT-T
1 AAAAAATTCT
*
11930619 -TAAAATTCT
1 AAAAAATTCT
*
11930628 -AAAAATTTT
1 AAAAAATTCT
*
11930637 AAATAATTCT
1 AAAAAATTCT
*
11930647 AAAAAATTTT
1 AAAAAATTCT
* *
11930657 GAATAATTCT
1 AAAAAATTCT
11930667 AAAAAAATTCT
1 -AAAAAATTCT
* *
11930678 TAAAAATTTT
1 AAAAAATTCT
* *
11930688 GAAAAATTAT
1 AAAAAATTCT
*
11930698 AAAAAATTTT
1 AAAAAATTCT
*
11930708 AAAAAATTATT
1 AAAAAATT-CT
11930719 AAAAAATTC-
1 AAAAAATTCT
11930728 -AAAAATT-T
1 AAAAAATTCT
*
11930736 -TAAAATTCT
1 AAAAAATTCT
11930745 CAAAAAAAATTCT
1 ---AAAAAATTCT
11930758 GAAAAAATT
1 -AAAAAATT
11930767 GTAACAAATC
Statistics
Matches: 125, Mismatches: 22, Indels: 18
0.76 0.13 0.11
Matches are distributed among these distances:
8 19 0.15
9 18 0.14
10 54 0.43
11 26 0.21
13 8 0.06
ACGTcount: A:0.58, C:0.05, G:0.02, T:0.36
Consensus pattern (10 bp):
AAAAAATTCT
Found at i:11931148 original size:20 final size:19
Alignment explanation
Indices: 11931117--11931282 Score: 69
Period size: 20 Copynumber: 8.7 Consensus size: 19
11931107 ACCGATGGCA
11931117 TTTTAGAATTTTTAAAATT
1 TTTTAGAATTTTTAAAATT
11931136 TTTTAGAAATTTTTAGAAACTT
1 TTTTAG-AATTTTTA-AAA-TT
** * *
11931158 TTAAAAAAATTTT---A-T
1 TTTTAGAATTTTTAAAATT
*
11931173 TTTT--AATTTTT-ACATT
1 TTTTAGAATTTTTAAAATT
* * *
11931189 TTTCAAAAATTTTTTAAATT
1 TTT-TAGAATTTTTAAAATT
* *
11931209 TTTTATAATTTTAAAAAGTT
1 TTTTAGAATTTTTAAAA-TT
11931229 TTTTAGAATTTTTCAACAAAATT
1 TTTTAGAATTTTT----AAAATT
* * **
11931252 TTTT-GTACTTCAAAAATT
1 TTTTAGAATTTTTAAAATT
11931270 TTTTAGAATTTTT
1 TTTTAGAATTTTT
11931283 TTAGAATTTA
Statistics
Matches: 108, Mismatches: 23, Indels: 32
0.66 0.14 0.20
Matches are distributed among these distances:
13 6 0.06
15 4 0.04
16 4 0.04
17 1 0.01
18 10 0.09
19 27 0.25
20 28 0.26
21 9 0.08
22 9 0.08
23 6 0.06
24 4 0.04
ACGTcount: A:0.37, C:0.04, G:0.04, T:0.55
Consensus pattern (19 bp):
TTTTAGAATTTTTAAAATT
Found at i:11931725 original size:14 final size:15
Alignment explanation
Indices: 11931704--11931740 Score: 58
Period size: 14 Copynumber: 2.5 Consensus size: 15
11931694 ATATCATCTA
11931704 ATAATTTTAAAATTT
1 ATAATTTTAAAATTT
*
11931719 A-AATTTTAATATTT
1 ATAATTTTAAAATTT
11931733 ATAATTTT
1 ATAATTTT
11931741 TTTATTCTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 13 0.65
15 7 0.35
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (15 bp):
ATAATTTTAAAATTT
Found at i:11934387 original size:19 final size:20
Alignment explanation
Indices: 11934358--11934400 Score: 79
Period size: 19 Copynumber: 2.2 Consensus size: 20
11934348 TCAATAGTCT
11934358 TTTACTTATTTTTATTATTA
1 TTTACTTATTTTTATTATTA
11934378 TTTA-TTATTTTTATTATTA
1 TTTACTTATTTTTATTATTA
11934397 TTTA
1 TTTA
11934401 AATATTAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 19 0.83
20 4 0.17
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (20 bp):
TTTACTTATTTTTATTATTA
Found at i:11934391 original size:16 final size:16
Alignment explanation
Indices: 11934363--11934399 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
11934353 AGTCTTTTAC
11934363 TTATTTTTATTATTAT
1 TTATTTTTATTATTAT
11934379 TTATTATTT-TTATTA-
1 TTATT-TTTATTATTAT
11934394 TTATTT
1 TTATTT
11934400 AAATATTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
14 1 0.05
15 5 0.25
16 11 0.55
17 3 0.15
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (16 bp):
TTATTTTTATTATTAT
Found at i:11935000 original size:3 final size:3
Alignment explanation
Indices: 11934992--11935039 Score: 87
Period size: 3 Copynumber: 16.0 Consensus size: 3
11934982 CTGAAGTGAA
*
11934992 TAT TAT TAT TAT TAT TAT TAC TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
11935040 AAAAAATTCT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:11936651 original size:25 final size:24
Alignment explanation
Indices: 11936600--11936653 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
11936590 TCTTATTAAT
* *
11936600 TTTTTTTCAATTATAGCTACAGTA
1 TTTTTTTCAATTACAGCTACAATA
11936624 TTTTTTTCAA-TAGCAGCTACAATA
1 TTTTTTTCAATTA-CAGCTACAATA
*
11936648 ATTTTT
1 TTTTTT
11936654 ATTACTATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
23 2 0.08
24 24 0.92
ACGTcount: A:0.30, C:0.13, G:0.07, T:0.50
Consensus pattern (24 bp):
TTTTTTTCAATTACAGCTACAATA
Found at i:11936892 original size:98 final size:97
Alignment explanation
Indices: 11936724--11936906 Score: 244
Period size: 98 Copynumber: 1.9 Consensus size: 97
11936714 TAATAATAAT
* * *
11936724 AAAACAAAATGGATGTTTATAGCCACCCTTCTTTGCCTATTTCTAAGAATCAAGAATAAGATAAA
1 AAAACAAAATGGATGTTTACAGCCACCCCTCTTTGCCTATTTCTAAGAATCAAGAATAAGACAAA
*
11936789 GACAAACAGACAACCATTTTGTTCAAAAGATG
66 GACAAACAGAAAACCATTTTGTTCAAAAGATG
* * * *
11936821 AAAATAAAATTGG-TGTTTACAGCTACCCCTCTTTTGCCTATTTTTGAA-AATCAGGAATAAGAC
1 AAAACAAAA-TGGATGTTTACAGCCACCCCTC-TTTGCCTATTTCT-AAGAATCAAGAATAAGAC
*
11936884 AAAGACAAATAGAAAACCATTTT
63 AAAGACAAACAGAAAACCATTTT
11936907 TTTTAAGTTT
Statistics
Matches: 74, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
97 23 0.31
98 49 0.66
99 2 0.03
ACGTcount: A:0.42, C:0.17, G:0.13, T:0.28
Consensus pattern (97 bp):
AAAACAAAATGGATGTTTACAGCCACCCCTCTTTGCCTATTTCTAAGAATCAAGAATAAGACAAA
GACAAACAGAAAACCATTTTGTTCAAAAGATG
Found at i:11937139 original size:43 final size:43
Alignment explanation
Indices: 11937090--11937171 Score: 110
Period size: 43 Copynumber: 1.9 Consensus size: 43
11937080 TAACGAAAGT
*
11937090 TCTTCTAAGCAAAGACTCAATGACTTTTAAAAATTTAAATGGC
1 TCTTCTAAGCAAAGACTCAATAACTTTTAAAAATTTAAATGGC
* * ** *
11937133 TCTTCTAAGTAGAGACTCGGTAACTTTTGAAAATTTAAA
1 TCTTCTAAGCAAAGACTCAATAACTTTTAAAAATTTAAA
11937172 CGATTCTACC
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 33 1.00
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.34
Consensus pattern (43 bp):
TCTTCTAAGCAAAGACTCAATAACTTTTAAAAATTTAAATGGC
Found at i:11937497 original size:43 final size:42
Alignment explanation
Indices: 11937440--11937628 Score: 209
Period size: 43 Copynumber: 4.4 Consensus size: 42
11937430 TGCTCAACAA
* * *
11937440 TTTTAAAAAGTTTAAAAGACTCATCTAAGTAAAAGCTTAATGAC
1 TTTTAAAAA-TTTAAAAGACTC-TCTAAGTAGAGGCTCAATGAC
* * * *
11937484 TTTTGAAAATTTAAAAGGCTTTTCTAAGCAGAGGCTCAATGAC
1 TTTTAAAAATTTAAAAGAC-TCTCTAAGTAGAGGCTCAATGAC
* * * *
11937527 TTTTGAAAGTTTAAAAAACTCCTCTAAATAGAGGCTCAATGAC
1 TTTTAAAAATTTAAAAGACT-CTCTAAGTAGAGGCTCAATGAC
* *
11937570 TTTT-AAAATTTAAAAGGCTTCTCTAAGTAGAGGCTTAATGAC
1 TTTTAAAAATTTAAAAGAC-TCTCTAAGTAGAGGCTCAATGAC
11937612 TTTTAAAAATTTAAAAG
1 TTTTAAAAATTTAAAAG
11937629 GGCTTTTCTA
Statistics
Matches: 123, Mismatches: 18, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
42 36 0.29
43 78 0.63
44 9 0.07
ACGTcount: A:0.40, C:0.12, G:0.14, T:0.33
Consensus pattern (42 bp):
TTTTAAAAATTTAAAAGACTCTCTAAGTAGAGGCTCAATGAC
Found at i:11937610 original size:85 final size:85
Alignment explanation
Indices: 11937373--11937627 Score: 287
Period size: 86 Copynumber: 3.0 Consensus size: 85
11937363 TTAAAAAGTT
* ** * * * *
11937373 TCCTCTAAATAGAGGTTCAACAACTTTAAAAAGTTTAAAATGGCTTTTTTAAGTAAATGCTCAA-
1 TCCTCTAAATAGAGGCTCAATGACTTTTAAAA-TTTAAAA-GGCTTTTCTAAGTAGAGGCTCAAT
* * *
11937437 CAATTTTAAAAAGTTTAAAAGAC
64 GACTTTT-AAAAGTTTAAAAAAC
* * * * * *
11937460 TCATCTAAGTAAAAGCTTAATGACTTTTGAAAATTTAAAAGGCTTTTCTAAGCAGAGGCTCAATG
1 TCCTCTAAATAGAGGCTCAATGACTTTT-AAAATTTAAAAGGCTTTTCTAAGTAGAGGCTCAATG
*
11937525 ACTTTTGAAAGTTTAAAAAAC
65 ACTTTTAAAAGTTTAAAAAAC
* *
11937546 TCCTCTAAATAGAGGCTCAATGACTTTTAAAATTTAAAAGGCTTCTCTAAGTAGAGGCTTAATGA
1 TCCTCTAAATAGAGGCTCAATGACTTTTAAAATTTAAAAGGCTTTTCTAAGTAGAGGCTCAATGA
*
11937611 CTTTTAAAAATTTAAAA
66 CTTTTAAAAGTTTAAAA
11937628 GGGCTTTTCT
Statistics
Matches: 139, Mismatches: 27, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
85 49 0.35
86 55 0.40
87 31 0.22
88 4 0.03
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.33
Consensus pattern (85 bp):
TCCTCTAAATAGAGGCTCAATGACTTTTAAAATTTAAAAGGCTTTTCTAAGTAGAGGCTCAATGA
CTTTTAAAAGTTTAAAAAAC
Found at i:11937664 original size:43 final size:43
Alignment explanation
Indices: 11937478--11937666 Score: 220
Period size: 43 Copynumber: 4.4 Consensus size: 43
11937468 GTAAAAGCTT
*
11937478 AATGACTTTTGAAAATTTAAAAGGCTTTTCTAAGCAGAGGCTC
1 AATGACTTTTGAAAATTTAAAAGGCTTCTCTAAGCAGAGGCTC
* ** * **
11937521 AATGACTTTTGAAAGTTTAAAAAACTCCTCTAAATAGAGGCTC
1 AATGACTTTTGAAAATTTAAAAGGCTTCTCTAAGCAGAGGCTC
* *
11937564 AATGACTTTT-AAAATTTAAAAGGCTTCTCTAAGTAGAGGCTT
1 AATGACTTTTGAAAATTTAAAAGGCTTCTCTAAGCAGAGGCTC
* * * *
11937606 AATGACTTTTAAAAATTTAAAAGGGCTTTTCTAAGCGGAGGCTT
1 AATGACTTTTGAAAATTTAAAA-GGCTTCTCTAAGCAGAGGCTC
* *
11937650 GATAACTTTT-AAAATTT
1 AATGACTTTTGAAAATTT
11937667 TAAATGATTT
Statistics
Matches: 126, Mismatches: 18, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
42 36 0.29
43 64 0.51
44 26 0.21
ACGTcount: A:0.37, C:0.13, G:0.16, T:0.34
Consensus pattern (43 bp):
AATGACTTTTGAAAATTTAAAAGGCTTCTCTAAGCAGAGGCTC
Done.