Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19866354
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 74000 characters in sequence are not A, C, G, or T
File 52 of 100
Found at i:12582219 original size:5 final size:5
Alignment explanation
Indices: 12582203--12582284 Score: 61
Period size: 5 Copynumber: 17.2 Consensus size: 5
12582193 GTTTATTTAA
* * *
12582203 TATTT T-TTT TATTT TATTT T-TAT T-TTT TATTTT TGTTT TACTTT T-CTT
1 TATTT TATTT TATTT TATTT TATTT TATTT TA-TTT TATTT TA-TTT TATTT
12582251 TA-TT TATTTT TATTT TATTT TA-TT TA-TT TATTT T
1 TATTT TA-TTT TATTT TATTT TATTT TATTT TATTT T
12582285 TATTCTATTG
Statistics
Matches: 64, Mismatches: 5, Indels: 16
0.75 0.06 0.19
Matches are distributed among these distances:
4 25 0.39
5 27 0.42
6 12 0.19
ACGTcount: A:0.16, C:0.02, G:0.01, T:0.80
Consensus pattern (5 bp):
TATTT
Found at i:12582228 original size:20 final size:19
Alignment explanation
Indices: 12582203--12582279 Score: 86
Period size: 20 Copynumber: 3.9 Consensus size: 19
12582193 GTTTATTTAA
12582203 TATTTTTTTTATTTTATTTT
1 TATTTTTTTTA-TTTATTTT
*
12582223 TATTTTTTATT-TTT-GTTT
1 TATTTTTT-TTATTTATTTT
*
12582241 TACTTTTCTTTATTTATTTT
1 TA-TTTTTTTTATTTATTTT
12582261 TATTTTATTTTATTTATTT
1 TATTTT-TTTTATTTATTT
12582280 ATTTTTATTC
Statistics
Matches: 48, Mismatches: 4, Indels: 10
0.77 0.06 0.16
Matches are distributed among these distances:
18 7 0.15
19 15 0.31
20 24 0.50
21 2 0.04
ACGTcount: A:0.16, C:0.03, G:0.01, T:0.81
Consensus pattern (19 bp):
TATTTTTTTTATTTATTTT
Found at i:12582241 original size:24 final size:24
Alignment explanation
Indices: 12582203--12582293 Score: 123
Period size: 24 Copynumber: 3.8 Consensus size: 24
12582193 GTTTATTTAA
12582203 TATTT-TTTTTATTTTATTTTTATT
1 TATTTATTTTTATTTTA-TTTTATT
* *
12582227 T-TTTATTTTTGTTTTACTTTTCTT
1 TATTTATTTTTATTTTA-TTTTATT
12582251 TATTTATTTTTATTTTATTTTATT
1 TATTTATTTTTATTTTATTTTATT
*
12582275 TATTTATTTTTATTCTATT
1 TATTTATTTTTATTTTATT
12582294 GTCTTTAAAT
Statistics
Matches: 59, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
23 3 0.05
24 42 0.71
25 14 0.24
ACGTcount: A:0.16, C:0.03, G:0.01, T:0.79
Consensus pattern (24 bp):
TATTTATTTTTATTTTATTTTATT
Found at i:12582405 original size:57 final size:55
Alignment explanation
Indices: 12582323--12582937 Score: 841
Period size: 58 Copynumber: 10.7 Consensus size: 55
12582313 AAATTCCAAA
12582323 AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAGAAATAAATTTTC
1 AAAAAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCTT--AGAAATAAA-TTTC
12582382 -AAAAA-ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTC
1 AAAAAATATTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTC
12582436 AAAAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTA-AAATAAATTTC
1 --AAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTC
12582492 AAAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTC
1 -AAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTC
12582548 AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT-GAAAATAAATTTC
1 --AAAAAATATTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCTTAG-AAATAAATTTC
*
12582606 AAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTTAA
1 --AAAAAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAA-TTT-C
12582666 AAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTTC
1 AAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAA-TTTC
12582722 AAAAAA-AGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT-GAAAATCGAAATTTC
1 AAAAAATA--TTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCTTAG-AAAT--AAATTTC
*
12582781 AAAAAATATTTTTGGGAAAAGTTGAAAGTATCAA-TTTCCTTTGAAATAAATTTTC
1 AAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAA-TTTC
*
12582836 AAAAAAAGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT-GAAAATCGAAATTTTC
1 -AAAAAA-TATTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCTTAG-AAAT--AAA-TTTC
*
12582897 AAAAATTATTTTTGGAGAAAAGTTGAAAGTATCAATTTTCC
1 AAAAAATATTTTTGG-GAAAAGTTGAAAGTATCAATTTTCC
12582938 CTACAAAAAA
Statistics
Matches: 521, Mismatches: 5, Indels: 60
0.89 0.01 0.10
Matches are distributed among these distances:
54 7 0.01
55 58 0.11
56 46 0.09
57 161 0.31
58 174 0.33
59 58 0.11
60 9 0.02
61 8 0.02
ACGTcount: A:0.44, C:0.07, G:0.13, T:0.35
Consensus pattern (55 bp):
AAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTC
Found at i:12582694 original size:115 final size:114
Alignment explanation
Indices: 12582321--12582937 Score: 907
Period size: 115 Copynumber: 5.4 Consensus size: 114
12582311 AAAAATTCCA
12582321 AAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAGAAATAAATTTTC--AA
1 AAAAAAAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCTT--A-AAATAAATTTTCAAAA
*
12582384 AAA-ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTC
62 AAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTT
*
12582436 AAAAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAATAAA-TTTCAAAAAAAT
1 AAAAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAATAAATTTTCAAAAAAAG
*
12582500 ATTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTC
66 ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTT
12582548 AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAA-TTTCAAAAAA
1 AAAAAAAATATTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCTT-AAAATAAATTTTC-AAAAA
* *
12582612 AATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTT
63 AAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTT
12582664 AAAAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTTCAAAAAAA
1 AAAAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTA-AAATAAATTTTCAAAAAAA
*
12582729 GGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT-GAAAATCGAAA-TTT
65 GATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAG-AAAT--AAATTTT
* *
12582780 -CAAAAAATATTTTTGGGAAAAGTTGAAAGTATCAA-TTTCCTTTGAAATAAATTTTCAAAAAAA
1 AAAAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCC-TTAAAATAAATTTTCAAAAAAA
12582843 GGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT-GAAAATCGAAATTTT
65 -GATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAG-AAAT--AAATTTT
* *
12582896 -CAAAAATTATTTTTGGAGAAAAGTTGAAAGTATCAATTTTCC
1 AAAAAAAATATTTTTGG-GAAAAGTTGAAAGTATCAATTTTCC
12582938 CTACAAAAAA
Statistics
Matches: 477, Mismatches: 8, Indels: 31
0.92 0.02 0.06
Matches are distributed among these distances:
110 4 0.01
111 7 0.01
112 63 0.13
113 35 0.07
114 67 0.14
115 193 0.40
116 81 0.17
117 22 0.05
118 5 0.01
ACGTcount: A:0.44, C:0.07, G:0.13, T:0.35
Consensus pattern (114 bp):
AAAAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAATAAATTTTCAAAAAAAG
ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTT
Found at i:12583950 original size:107 final size:106
Alignment explanation
Indices: 12583761--12583979 Score: 269
Period size: 107 Copynumber: 2.0 Consensus size: 106
12583751 CTTACAAGTG
* *
12583761 TTAATTGCAAATTTATAACTAAACAACAAATGCCCACAAATATTTTAAATTTATGACTCAAATAT
1 TTAATTGCAAATTTATAACTAAACAACAAATGCCCACAAATAATTCAAATTTATGACTCAAATAT
** * * * *
12583826 TGCATTTCTATTCATAGAAATACAGTAATTGCAAGATAGATA
66 TG-ATTTCTATGAATAGAAACACAATAATTACAAAATAGATA
* * * * *
12583868 TTAATTGCAAATTTATGACTAAATAACAGATGCCCACAAATAATTCAAATTTATGACTTAGATAC
1 TTAATTGCAAATTTATAACTAAACAACAAATGCCCACAAATAATTCAAATTTATGACTCAAATA-
* *
12583933 CTTG-TTTTTATGAATAGAAACACAATAATTACAAAATATATA
65 -TTGATTTCTATGAATAGAAACACAATAATTACAAAATAGATA
12583975 TTAAT
1 TTAAT
12583980 GTCGATGTAC
Statistics
Matches: 95, Mismatches: 15, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
107 92 0.97
109 3 0.03
ACGTcount: A:0.44, C:0.13, G:0.08, T:0.34
Consensus pattern (106 bp):
TTAATTGCAAATTTATAACTAAACAACAAATGCCCACAAATAATTCAAATTTATGACTCAAATAT
TGATTTCTATGAATAGAAACACAATAATTACAAAATAGATA
Found at i:12584039 original size:18 final size:18
Alignment explanation
Indices: 12584001--12584043 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
12583991 TCAGCAATCA
*
12584001 TAATTGCCTTACAAGAAT
1 TAATTGTCTTACAAGAAT
**
12584019 TAATTGTCTTACAAGCGT
1 TAATTGTCTTACAAGAAT
12584037 TAATTGT
1 TAATTGT
12584044 AAATTTATGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.40
Consensus pattern (18 bp):
TAATTGTCTTACAAGAAT
Found at i:12584988 original size:18 final size:19
Alignment explanation
Indices: 12584965--12585000 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
12584955 TGACATAATG
12584965 ACAAAAA-ATAAAAATGAA
1 ACAAAAAGATAAAAATGAA
12584983 ACAAAAAGATAAAAATGA
1 ACAAAAAGATAAAAATGA
12585001 TATGGTTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.75, C:0.06, G:0.08, T:0.11
Consensus pattern (19 bp):
ACAAAAAGATAAAAATGAA
Found at i:12586449 original size:21 final size:21
Alignment explanation
Indices: 12586422--12586471 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
12586412 TTGTTTTTAC
12586422 TTTTTTTATTTACTTTTTTCT
1 TTTTTTTATTTACTTTTTTCT
* **
12586443 TTTTTTTTTTTGTTTTTTTCT
1 TTTTTTTATTTACTTTTTTCT
12586464 TTTCTTTT
1 TTT-TTTT
12586472 TAAATCTCAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
21 21 0.84
22 4 0.16
ACGTcount: A:0.04, C:0.08, G:0.02, T:0.86
Consensus pattern (21 bp):
TTTTTTTATTTACTTTTTTCT
Found at i:12586451 original size:13 final size:13
Alignment explanation
Indices: 12586435--12586472 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
12586425 TTTTATTTAC
12586435 TTTTTTCTTTTTT
1 TTTTTTCTTTTTT
*
12586448 TTTTTTGTTTTTT
1 TTTTTTCTTTTTT
*
12586461 TCTTTTCTTTTT
1 TTTTTTCTTTTT
12586473 AAATCTCAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.00, C:0.08, G:0.03, T:0.89
Consensus pattern (13 bp):
TTTTTTCTTTTTT
Found at i:12586458 original size:20 final size:20
Alignment explanation
Indices: 12586412--12586472 Score: 68
Period size: 20 Copynumber: 3.0 Consensus size: 20
12586402 TTTATTAAAA
* *
12586412 TTGTTTTTACTTTTTTTATT
1 TTGTTTTTTCTTTTTTTTTT
**
12586432 TACTTTTTTCTTTTTTTTTT
1 TTGTTTTTTCTTTTTTTTTT
12586452 TTGTTTTTTTCTTTTCTTTTT
1 TTG-TTTTTTCTTTT-TTTTT
12586473 AAATCTCAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
20 17 0.52
21 11 0.33
22 5 0.15
ACGTcount: A:0.05, C:0.08, G:0.03, T:0.84
Consensus pattern (20 bp):
TTGTTTTTTCTTTTTTTTTT
Found at i:12587647 original size:25 final size:25
Alignment explanation
Indices: 12587619--12587667 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
12587609 TAATGAACCC
12587619 TATAATATATA-AAATAATAAAATAT
1 TATAA-ATATAGAAATAATAAAATAT
*
12587644 TATAAATATAGAGATAATAAAATA
1 TATAAATATAGAAATAATAAAATA
12587668 ATTTTTTATC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 5 0.23
25 17 0.77
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (25 bp):
TATAAATATAGAAATAATAAAATAT
Found at i:12587768 original size:21 final size:21
Alignment explanation
Indices: 12587729--12587768 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
12587719 TTTTTTTTTG
*
12587729 TTTGAGATGAAAAATTAAAAT
1 TTTGAGATGAAAAACTAAAAT
* *
12587750 TTTGAGCTGAAAAGCTAAA
1 TTTGAGATGAAAAACTAAA
12587769 TTATTTTATT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.47, C:0.05, G:0.17, T:0.30
Consensus pattern (21 bp):
TTTGAGATGAAAAACTAAAAT
Found at i:12596603 original size:9 final size:9
Alignment explanation
Indices: 12596579--12596620 Score: 59
Period size: 9 Copynumber: 4.7 Consensus size: 9
12596569 CAATTTGTCC
*
12596579 TGTATTATTT
1 TGTATT-TTA
12596589 TGTATTTTA
1 TGTATTTTA
12596598 TGTATTTTA
1 TGTATTTTA
12596607 TGTATTTTA
1 TGTATTTTA
12596616 T-TATT
1 TGTATT
12596621 ATGTATATAT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
8 4 0.13
9 21 0.68
10 6 0.19
ACGTcount: A:0.21, C:0.00, G:0.10, T:0.69
Consensus pattern (9 bp):
TGTATTTTA
Found at i:12596612 original size:18 final size:19
Alignment explanation
Indices: 12596579--12596632 Score: 67
Period size: 19 Copynumber: 2.9 Consensus size: 19
12596569 CAATTTGTCC
*
12596579 TGTATTATTTTGTATTTTA
1 TGTATTATTATGTATTTTA
12596598 TGTATT-TTATGTATTTTA
1 TGTATTATTATGTATTTTA
*
12596616 T-TATTATGTATATATTT
1 TGTATTAT-TATGTATTT
12596633 ATTTATTTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
17 4 0.13
18 13 0.42
19 14 0.45
ACGTcount: A:0.24, C:0.00, G:0.09, T:0.67
Consensus pattern (19 bp):
TGTATTATTATGTATTTTA
Found at i:12597094 original size:26 final size:24
Alignment explanation
Indices: 12597052--12597105 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 24
12597042 CTGGGAGTGA
12597052 GAAAAATTTTTTAGAAATTTTTGG
1 GAAAAATTTTTTAGAAATTTTTGG
* *
12597076 CGAAAATTTTTTCTGGAAATTTTTGG
1 -GAAAAATTTTT-TAGAAATTTTTGG
12597102 GAAA
1 GAAA
12597106 TTTCCAGATT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
25 14 0.54
26 12 0.46
ACGTcount: A:0.35, C:0.04, G:0.19, T:0.43
Consensus pattern (24 bp):
GAAAAATTTTTTAGAAATTTTTGG
Found at i:12597174 original size:31 final size:31
Alignment explanation
Indices: 12597121--12597181 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
12597111 AGATTCCGCG
* ** *
12597121 CGAAAATTCCGGCGAAGTTTGAATTTTCCGA
1 CGAAAATTCCGGCCAACATTGAAGTTTCCGA
12597152 CGAAAATTCCGGCCAACATTGAAGTTTCCG
1 CGAAAATTCCGGCCAACATTGAAGTTTCCG
12597182 GCGACCTGCC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (31 bp):
CGAAAATTCCGGCCAACATTGAAGTTTCCGA
Found at i:12597669 original size:28 final size:28
Alignment explanation
Indices: 12597609--12597684 Score: 72
Period size: 28 Copynumber: 2.8 Consensus size: 28
12597599 CCGCTCCAGG
12597609 GTTT-TTTTTT-TTTT-TTT-TTTCTTT
1 GTTTATTTTTTATTTTATTTATTTCTTT
* *
12597633 CTTGAATTTTTTATTTTATTTATTTCTTT
1 GTT-TATTTTTTATTTTATTTATTTCTTT
*
12597662 GTTTA-TTTTAATTTTTATTTATT
1 GTTTATTTTTTA-TTTTATTTATT
12597685 AGATTAGGTT
Statistics
Matches: 41, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
24 2 0.05
26 6 0.15
27 9 0.22
28 15 0.37
29 9 0.22
ACGTcount: A:0.13, C:0.04, G:0.04, T:0.79
Consensus pattern (28 bp):
GTTTATTTTTTATTTTATTTATTTCTTT
Found at i:12597831 original size:59 final size:58
Alignment explanation
Indices: 12597767--12598043 Score: 388
Period size: 59 Copynumber: 4.7 Consensus size: 58
12597757 AATTTTCCAA
*
12597767 AAAAAAATATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTTC
1 AAAAAAA-ATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTCAGAAATAAA-TTTC
12597827 --AAAAAATATTTTT-GGGAAAAG-TGAAAGTATCAATTTT-CTCAGAAATAAATTTTC
1 AAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTCAGAAATAAA-TTTC
*
12597881 AAAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTCAGAAATAAATTTC
1 --AAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTCAGAAATAAATTTC
*
12597941 GAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT-TGAAAATCGAAATTTC
1 -AAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTCAG-AAAT--AAATTTC
*
12598002 -CAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCC
1 AAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCC
12598044 CTACAAAAAA
Statistics
Matches: 202, Mismatches: 5, Indels: 21
0.89 0.02 0.09
Matches are distributed among these distances:
54 16 0.08
55 16 0.08
56 8 0.04
57 8 0.04
58 19 0.09
59 96 0.48
60 20 0.10
61 19 0.09
ACGTcount: A:0.45, C:0.08, G:0.13, T:0.34
Consensus pattern (58 bp):
AAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTCAGAAATAAATTTC
Found at i:12606005 original size:16 final size:16
Alignment explanation
Indices: 12605970--12606034 Score: 51
Period size: 16 Copynumber: 3.8 Consensus size: 16
12605960 AATATTTTTT
12605970 AAAAATATCAATAAAT-A
1 AAAAATAT-AA-AAATAA
** *
12605987 AAATTTATACAAATAA
1 AAAAATATAAAAATAA
12606003 AAAAATATAAAAATAA
1 AAAAATATAAAAATAA
12606019 AGGAAGAATATAAAAA
1 A--AA-AATATAAAAA
12606035 CAAATTGAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
15 4 0.11
16 16 0.42
17 6 0.16
18 2 0.05
19 10 0.26
ACGTcount: A:0.71, C:0.03, G:0.05, T:0.22
Consensus pattern (16 bp):
AAAAATATAAAAATAA
Found at i:12607531 original size:24 final size:25
Alignment explanation
Indices: 12607496--12607548 Score: 74
Period size: 24 Copynumber: 2.2 Consensus size: 25
12607486 TTTTTTTGAA
*
12607496 AAAATTTTTAC-AATAACAATAAA-T
1 AAAATTTATACAAATAA-AATAAATT
12607520 AAAATTTATACAAATAAAATAAATT
1 AAAATTTATACAAATAAAATAAATT
12607545 AAAA
1 AAAA
12607549 CAAATAATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
24 16 0.62
25 10 0.38
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (25 bp):
AAAATTTATACAAATAAAATAAATT
Found at i:12607535 original size:19 final size:19
Alignment explanation
Indices: 12607513--12607559 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
12607503 TTACAATAAC
* *
12607513 AATAAATAAAATTTATACA
1 AATAAATAAAATTAAAACA
12607532 AATAAA-ATAAATTAAAACA
1 AATAAATA-AAATTAAAACA
12607551 AAT-AATAAA
1 AATAAATAAA
12607560 TAAAGAATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
18 5 0.21
19 19 0.79
ACGTcount: A:0.70, C:0.04, G:0.00, T:0.26
Consensus pattern (19 bp):
AATAAATAAAATTAAAACA
Found at i:12614555 original size:98 final size:93
Alignment explanation
Indices: 12614440--12614671 Score: 216
Period size: 95 Copynumber: 2.4 Consensus size: 93
12614430 CTTATAAATC
* * *
12614440 TAAATCCTCCAAACATTTGGTAGGATTGAAAAATTATTTTAAAACAAAGTTTATTAT-AACATTC
1 TAAATCCTTCAATCATTTGGTAGGATT-AAAAATTATTTT--AA-AAAG-TAATTATGAA-ATTC
*
12614504 TCCAATCATTTGGTAGAAATCAAAATTCGAGATT
60 TCCAATCATTTGGTACAAATCAAAATTCGAGATT
* * * * * *
12614538 TAAATCCTTCAATCATTTGATAGGTTTAAAAAATTGCTTTTCAAAAGTAATTATGAAATTTTCTA
1 TAAATCCTTCAATCATTTGGTAGGATT-AAAAATT-ATTTTAAAAAGTAATTATGAAATTCTCCA
* * * * *
12614603 ATTATTTGGTACAATTCATAATTCTATATT
64 ATCATTTGGTACAAATCAAAATTCGAGATT
* *
12614633 TAAATCC-TCTAATCATTTGGTAAGATTAAAATTTATTTT
1 TAAATCCTTC-AATCATTTGGTAGGATTAAAAATTATTTT
12614672 TTTCATAAAA
Statistics
Matches: 110, Mismatches: 21, Indels: 11
0.77 0.15 0.08
Matches are distributed among these distances:
93 4 0.04
94 8 0.07
95 57 0.52
96 6 0.05
97 1 0.01
98 30 0.27
99 4 0.04
ACGTcount: A:0.38, C:0.12, G:0.09, T:0.41
Consensus pattern (93 bp):
TAAATCCTTCAATCATTTGGTAGGATTAAAAATTATTTTAAAAAGTAATTATGAAATTCTCCAAT
CATTTGGTACAAATCAAAATTCGAGATT
Found at i:12615577 original size:18 final size:18
Alignment explanation
Indices: 12615550--12615592 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
12615540 TTCAATTTTG
12615550 CAAGAA-TTTCAAATTCA
1 CAAGAATTTTCAAATTCA
*
12615567 CAAGAATTTTCAGATTCA
1 CAAGAATTTTCAAATTCA
12615585 CAAGAATT
1 CAAGAATT
12615593 CAACTTTGCA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 6 0.25
18 18 0.75
ACGTcount: A:0.44, C:0.16, G:0.09, T:0.30
Consensus pattern (18 bp):
CAAGAATTTTCAAATTCA
Found at i:12615719 original size:20 final size:21
Alignment explanation
Indices: 12615696--12615745 Score: 59
Period size: 20 Copynumber: 2.4 Consensus size: 21
12615686 CAGGAATTTG
12615696 CATCAAAATTTCAAGG-TTCA
1 CATCAAAATTTCAAGGATTCA
*
12615716 CATCCAACA-TTCAAGGATTCA
1 CAT-CAAAATTTCAAGGATTCA
*
12615737 CATGAAAAT
1 CATCAAAAT
12615746 ATTCTACAGA
Statistics
Matches: 24, Mismatches: 3, Indels: 5
0.75 0.09 0.16
Matches are distributed among these distances:
20 13 0.54
21 11 0.46
ACGTcount: A:0.42, C:0.22, G:0.10, T:0.26
Consensus pattern (21 bp):
CATCAAAATTTCAAGGATTCA
Found at i:12615889 original size:23 final size:23
Alignment explanation
Indices: 12615859--12615905 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
12615849 CACATCTAAT
* *
12615859 ATTTCAAAGGTTCTCATTCAAAA
1 ATTTCAAAGATTCTAATTCAAAA
12615882 ATTTCAAAGATTCTAATTCAAAA
1 ATTTCAAAGATTCTAATTCAAAA
12615905 A
1 A
12615906 ACTTTAGGGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.45, C:0.15, G:0.06, T:0.34
Consensus pattern (23 bp):
ATTTCAAAGATTCTAATTCAAAA
Found at i:12617236 original size:9 final size:8
Alignment explanation
Indices: 12617165--12617237 Score: 60
Period size: 9 Copynumber: 8.9 Consensus size: 8
12617155 TCTTCTCCTC
12617165 TTTTTC-T
1 TTTTTCAT
12617172 TTTTTCAT
1 TTTTTCAT
*
12617180 TTTTTCACA
1 TTTTTCA-T
**
12617189 TTTCACATT
1 TTTTTCA-T
12617198 TTTTTCAT
1 TTTTTCAT
*
12617206 TTTTTTACT
1 TTTTTCA-T
12617215 TTTTTCA-
1 TTTTTCAT
12617222 TTTTTCAT
1 TTTTTCAT
12617230 TTCTTTCA
1 TT-TTTCA
12617238 CTTCATCCAT
Statistics
Matches: 52, Mismatches: 9, Indels: 8
0.75 0.13 0.12
Matches are distributed among these distances:
7 13 0.25
8 17 0.33
9 22 0.42
ACGTcount: A:0.14, C:0.16, G:0.00, T:0.70
Consensus pattern (8 bp):
TTTTTCAT
Found at i:12621550 original size:38 final size:39
Alignment explanation
Indices: 12621473--12621550 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
12621463 AAATGCAATG
*
12621473 TAAGAGATAAATTAACAAGTAATTTCTTTTATTCAATTT
1 TAAGAGATAAATTAACAAGTAAATTCTTTTATTCAATTT
12621512 TAAGAGATAAATTAACAAGTAAATT-TTTTATTCAATTT
1 TAAGAGATAAATTAACAAGTAAATTCTTTTATTCAATTT
12621550 T
1 T
12621551 TTAGTGATTT
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
38 14 0.37
39 24 0.63
ACGTcount: A:0.42, C:0.06, G:0.08, T:0.44
Consensus pattern (39 bp):
TAAGAGATAAATTAACAAGTAAATTCTTTTATTCAATTT
Found at i:12621567 original size:16 final size:16
Alignment explanation
Indices: 12621546--12621597 Score: 61
Period size: 15 Copynumber: 3.2 Consensus size: 16
12621536 TTTTTATTCA
*
12621546 ATTTTTTAGTGATTTT
1 ATTTTTTAGTTATTTT
*
12621562 ATTTTTTA-TTTTTTT
1 ATTTTTTAGTTATTTT
*
12621577 ATTTTTTTGTTATTGTT
1 ATTTTTTAGTTATT-TT
12621594 ATTT
1 ATTT
12621598 CTAATGATTT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
15 12 0.40
16 12 0.40
17 6 0.20
ACGTcount: A:0.15, C:0.00, G:0.08, T:0.77
Consensus pattern (16 bp):
ATTTTTTAGTTATTTT
Found at i:12622110 original size:23 final size:25
Alignment explanation
Indices: 12622093--12622145 Score: 88
Period size: 25 Copynumber: 2.1 Consensus size: 25
12622083 TATATAATAG
12622093 ATGACATAATTAAAATATACATGAA
1 ATGACATAATTAAAATATACATGAA
* *
12622118 ATGACATATTTAAAATATGCATGAA
1 ATGACATAATTAAAATATACATGAA
12622143 ATG
1 ATG
12622146 TAAAACACAC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.51, C:0.08, G:0.11, T:0.30
Consensus pattern (25 bp):
ATGACATAATTAAAATATACATGAA
Found at i:12622157 original size:2 final size:2
Alignment explanation
Indices: 12622150--12622180 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
12622140 GAAATGTAAA
12622150 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
12622181 AACTTGTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:12622956 original size:62 final size:62
Alignment explanation
Indices: 12622890--12623144 Score: 238
Period size: 62 Copynumber: 4.1 Consensus size: 62
12622880 AACTACACTT
12622890 AATTATCATGTTTAATTAAAAGAAATGCCATAATTGTTTGCATTTAAAATTTTAAAAAACTC
1 AATTATCATGTTTAATTAAAAGAAATGCCATAATTGTTTGCATTTAAAATTTTAAAAAACTC
* * *
12622952 AATTA-CAGTGTTTAAATT-AAAGAAATGCCATAAATGCTTAG-ATTTAAGAATTTGAAAAAAAC
1 AATTATCA-TGTTT-AATTAAAAGAAATGCCATAATTG-TTTGCATTTAA-AATTT-TAAAAAAC
*
12623014 TT
61 TC
** * * ** * *
12623016 AATTA-CAATGTTTGGTTAAAAGAAAAGCTATAATTGTTTGCATTTAGAAA-TAGAATATACT-
1 AATTATC-ATGTTTAATTAAAAGAAATGCCATAATTGTTTGCATTTA-AAATTTTAAAAAACTC
* * *
12623077 AATTATGGCA--TTTAATTAAAAAAAATGCCGTAATAGTTTGCATTTAAAATTTTAAAAAACTC
1 AATTAT--CATGTTTAATTAAAAGAAATGCCATAATTGTTTGCATTTAAAATTTTAAAAAACTC
12623139 AATTAT
1 AATTAT
12623145 GGTGTTTTAT
Statistics
Matches: 154, Mismatches: 25, Indels: 28
0.74 0.12 0.14
Matches are distributed among these distances:
60 3 0.02
61 43 0.28
62 45 0.29
63 19 0.12
64 42 0.27
65 2 0.01
ACGTcount: A:0.45, C:0.08, G:0.11, T:0.36
Consensus pattern (62 bp):
AATTATCATGTTTAATTAAAAGAAATGCCATAATTGTTTGCATTTAAAATTTTAAAAAACTC
Found at i:12623412 original size:8 final size:8
Alignment explanation
Indices: 12623381--12623437 Score: 60
Period size: 8 Copynumber: 7.1 Consensus size: 8
12623371 ATTAATTAAT
*
12623381 TATTTATT
1 TATTTATA
12623389 TATTTATA
1 TATTTATA
*
12623397 TATATATA
1 TATTTATA
12623405 TATTTATA
1 TATTTATA
* *
12623413 TAATGATA
1 TATTTATA
* *
12623421 TTTTTAAA
1 TATTTATA
12623429 TATTTATA
1 TATTTATA
12623437 T
1 T
12623438 TTAAAAAATA
Statistics
Matches: 38, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
8 38 1.00
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.60
Consensus pattern (8 bp):
TATTTATA
Found at i:12623437 original size:30 final size:30
Alignment explanation
Indices: 12623389--12623454 Score: 78
Period size: 30 Copynumber: 2.2 Consensus size: 30
12623379 ATTATTTATT
* * * * *
12623389 TATTTATATATATATATATTTATATAATGA
1 TATTTTTAAATATATATATTTAAAAAATAA
*
12623419 TATTTTTAAATATTTATATTTAAAAAATAA
1 TATTTTTAAATATATATATTTAAAAAATAA
12623449 TATTTT
1 TATTTT
12623455 ATATTTAAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.55
Consensus pattern (30 bp):
TATTTTTAAATATATATATTTAAAAAATAA
Found at i:12623476 original size:22 final size:21
Alignment explanation
Indices: 12623427--12623479 Score: 92
Period size: 21 Copynumber: 2.6 Consensus size: 21
12623417 GATATTTTTA
12623427 AATA-TTTATATTTAAAAAAT
1 AATATTTTATATTTAAAAAAT
12623447 AATATTTTATATTTAAAAAAT
1 AATATTTTATATTTAAAAAAT
12623468 AATATTTT-TATT
1 AATATTTTATATT
12623480 AATTTCGGGT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
20 8 0.25
21 24 0.75
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (21 bp):
AATATTTTATATTTAAAAAAT
Found at i:12630830 original size:22 final size:22
Alignment explanation
Indices: 12630805--12630847 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
12630795 TCAAAATCAC
12630805 ATTTT-AAATGGAATAATTTTAA
1 ATTTTAAAATGGAA-AATTTTAA
*
12630827 ATTTTAAAATTGAAAATTTTA
1 ATTTTAAAATGGAAAATTTTA
12630848 TTAGGACGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.47, C:0.00, G:0.07, T:0.47
Consensus pattern (22 bp):
ATTTTAAAATGGAAAATTTTAA
Found at i:12631382 original size:13 final size:14
Alignment explanation
Indices: 12631356--12631382 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
12631346 TTTGTTTCAC
12631356 AAAAAATGATTTTT
1 AAAAAATGATTTTT
12631370 AAAAAATGATTTT
1 AAAAAATGATTTT
12631383 CACATTTGCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.07, T:0.41
Consensus pattern (14 bp):
AAAAAATGATTTTT
Found at i:12631624 original size:43 final size:43
Alignment explanation
Indices: 12631574--12631714 Score: 123
Period size: 39 Copynumber: 3.3 Consensus size: 43
12631564 ATTATAAATA
12631574 AATAAATAACATTATATTATAATATATTAATAAATAATTA-ATT
1 AATAAATAA-ATTATATTATAATATATTAATAAATAATTATATT
* * * * *
12631617 AGTAAATATTATTATA-AATAA-ATATT-CT-ACTAA-TATATT
1 AATAAATA-AATTATATTATAATATATTAATAAATAATTATATT
* *
12631656 AATAAATAAATAATATTATAATATATTAACAAATAATATACTATT
1 AATAAATAAATTATATTATAATATATTAATAAATAAT-TA-TATT
*
12631701 AATATAATATATTA
1 AATA-AATAAATTA
12631715 ACAAATATTA
Statistics
Matches: 74, Mismatches: 14, Indels: 17
0.70 0.13 0.16
Matches are distributed among these distances:
38 7 0.09
39 18 0.24
40 6 0.08
41 5 0.07
42 8 0.11
43 13 0.18
44 2 0.03
45 8 0.11
46 7 0.09
ACGTcount: A:0.55, C:0.04, G:0.01, T:0.41
Consensus pattern (43 bp):
AATAAATAAATTATATTATAATATATTAATAAATAATTATATT
Found at i:12631665 original size:31 final size:29
Alignment explanation
Indices: 12631630--12631721 Score: 100
Period size: 31 Copynumber: 3.1 Consensus size: 29
12631620 AAATATTATT
*
12631630 ATAAATAAATATTCTACTAATATATTAATAA
1 ATAAATAAATATT-TA-TAATATATTAACAA
12631661 ATAAAT-AATA-TTATAATATATTAACAA
1 ATAAATAAATATTTATAATATATTAACAA
*
12631688 AT-AATATACTATTAATATAATATATTAACAA
1 ATAAATA-AATATT--TATAATATATTAACAA
12631719 ATA
1 ATA
12631722 TTATTTTGTA
Statistics
Matches: 53, Mismatches: 2, Indels: 11
0.80 0.03 0.17
Matches are distributed among these distances:
26 3 0.06
27 15 0.28
28 5 0.09
29 2 0.04
30 4 0.08
31 24 0.45
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (29 bp):
ATAAATAAATATTTATAATATATTAACAA
Found at i:12631677 original size:27 final size:27
Alignment explanation
Indices: 12631574--12631721 Score: 133
Period size: 27 Copynumber: 5.3 Consensus size: 27
12631564 ATTATAAATA
*
12631574 AATAAATAACATTATATTATAATATATT
1 AATAAATAA-ATAATATTATAATATATT
* *
12631602 AATAAATAATTAATTAGTA-AATATTATT
1 AATAAATAAATAA-TATTATAATA-TATT
12631630 -ATAAATAAAT-AT-TCTACTAATATATT
1 AATAAATAAATAATAT-TA-TAATATATT
12631656 AATAAATAAATAATATTATAATATATT
1 AATAAATAAATAATATTATAATATATT
* *
12631683 AACAAATAATATACTATTAATATAATATATT
1 AATAAATAA-ATA--A-TATTATAATATATT
*
12631714 AACAAATA
1 AATAAATA
12631722 TTATTTTGTA
Statistics
Matches: 101, Mismatches: 7, Indels: 21
0.78 0.05 0.16
Matches are distributed among these distances:
25 3 0.03
26 5 0.05
27 46 0.46
28 24 0.24
29 1 0.01
30 1 0.01
31 21 0.21
ACGTcount: A:0.55, C:0.04, G:0.01, T:0.40
Consensus pattern (27 bp):
AATAAATAAATAATATTATAATATATT
Found at i:12631721 original size:54 final size:56
Alignment explanation
Indices: 12631591--12631735 Score: 145
Period size: 53 Copynumber: 2.6 Consensus size: 56
12631581 AACATTATAT
* *
12631591 TATAATATATTAATAAATAATTAATTAGTAAATATTATTATAAATAAATATTCTACTAA
1 TATAATATATTAATAAATAA-T-ATTAGTAAATATTA-TACAAATAAATATACTACTAA
* * *
12631650 TATATTA-ATAAATAAATAATATTA-TAATATATTA-ACAAAT-AATATACTATTAA
1 TATAATATATTAATAAATAATATTAGTAA-ATATTATACAAATAAATATACTACTAA
* * *
12631703 TATAATATATTAACAAATATTATTTTGTAAATA
1 TATAATATATTAATAAATAATA-TTAGTAAATA
12631736 ATACATTAAT
Statistics
Matches: 72, Mismatches: 10, Indels: 12
0.77 0.11 0.13
Matches are distributed among these distances:
53 17 0.24
54 16 0.22
55 8 0.11
56 13 0.18
57 1 0.01
58 11 0.15
59 6 0.08
ACGTcount: A:0.53, C:0.03, G:0.01, T:0.42
Consensus pattern (56 bp):
TATAATATATTAATAAATAATATTAGTAAATATTATACAAATAAATATACTACTAA
Found at i:12631721 original size:81 final size:82
Alignment explanation
Indices: 12631574--12631723 Score: 198
Period size: 81 Copynumber: 1.8 Consensus size: 82
12631564 ATTATAAATA
* * * * *
12631574 AATAAATAACATTATATTATAATATATTAATAAATAATTAATTAGTAAATATTATTATAAATAAA
1 AATAAATAACATAATATTATAATATATTAACAAATAATTAACTAGTAAATAATATTATAAACAAA
12631639 TATTCTACTAATATATT
66 TATTCTACTAATATATT
* *
12631656 AATAAATAA-ATAATATTATAATATATTAACAAATAA-TATACTATTAATATAATA-TATTAACA
1 AATAAATAACATAATATTATAATATATTAACAAATAATTA-ACTAGTAA-ATAATATTATAAACA
12631718 AATATT
64 AATATT
12631724 ATTTTGTAAA
Statistics
Matches: 59, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
80 2 0.03
81 43 0.73
82 14 0.24
ACGTcount: A:0.55, C:0.04, G:0.01, T:0.41
Consensus pattern (82 bp):
AATAAATAACATAATATTATAATATATTAACAAATAATTAACTAGTAAATAATATTATAAACAAA
TATTCTACTAATATATT
Found at i:12631769 original size:16 final size:16
Alignment explanation
Indices: 12631750--12631783 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
12631740 ATTAATTTAT
12631750 TAATAAATAAT-ATAAA
1 TAAT-AATAATAATAAA
12631766 TAATAATAATAATAAA
1 TAATAATAATAATAAA
12631782 TA
1 TA
12631784 GTTTTATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (16 bp):
TAATAATAATAATAAA
Found at i:12631849 original size:17 final size:18
Alignment explanation
Indices: 12631822--12631856 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
12631812 ATAATATTTT
12631822 AATATTAATTATTATTAA
1 AATATTAATTATTATTAA
*
12631840 AATA-TAATTATTTTTAA
1 AATATTAATTATTATTAA
12631857 TATTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
AATATTAATTATTATTAA
Found at i:12631868 original size:16 final size:16
Alignment explanation
Indices: 12631798--12631892 Score: 79
Period size: 16 Copynumber: 5.8 Consensus size: 16
12631788 TATTTTAAGT
12631798 ATTTTT-ATATTAACATA
1 ATTTTTAATATT-A-ATA
*
12631815 ATATTTTAATATTAATT
1 AT-TTTTAATATTAATA
* * *
12631832 ATTATTAAAATATAATT
1 ATTTTTAATAT-TAATA
12631849 ATTTTTAATATTAATA
1 ATTTTTAATATTAATA
12631865 ATTTTAGTAATA--AATA
1 ATTTT--TAATATTAATA
12631881 ATTTTTAATATT
1 ATTTTTAATATT
12631893 TTAATAGCTA
Statistics
Matches: 65, Mismatches: 6, Indels: 15
0.76 0.07 0.17
Matches are distributed among these distances:
14 5 0.08
16 25 0.38
17 20 0.31
18 10 0.15
19 5 0.08
ACGTcount: A:0.44, C:0.01, G:0.01, T:0.54
Consensus pattern (16 bp):
ATTTTTAATATTAATA
Found at i:12631890 original size:32 final size:33
Alignment explanation
Indices: 12631812--12631892 Score: 103
Period size: 33 Copynumber: 2.5 Consensus size: 33
12631802 TTATATTAAC
*
12631812 ATAATATTTTAATATTAATTATTATTAAAATATA
1 ATAAT-TTTTAATATTAATAATTATTAAAATATA
* *
12631846 ATTATTTTTAATATTAATAATT-TTAGTAATA-A
1 ATAATTTTTAATATTAATAATTATTA-AAATATA
12631878 ATAATTTTTAATATT
1 ATAATTTTTAATATT
12631893 TTAATAGCTA
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
32 18 0.43
33 20 0.48
34 4 0.10
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (33 bp):
ATAATTTTTAATATTAATAATTATTAAAATATA
Found at i:12634208 original size:30 final size:30
Alignment explanation
Indices: 12634168--12634261 Score: 89
Period size: 30 Copynumber: 3.1 Consensus size: 30
12634158 TTCATGAAAT
* *
12634168 TAAAATATCATAACTTTTAATGTTAAAAAA
1 TAAAAAATCATAAATTTTAATGTTAAAAAA
*** * *
12634198 TAAAAAATCATAAAAAATAATTTTAAAATA
1 TAAAAAATCATAAATTTTAATGTTAAAAAA
* * *
12634228 TAAAAAATAAAAAATTTTAATGTTTCAAAAA
1 TAAAAAATCATAAATTTTAATG-TTAAAAAA
12634259 TAA
1 TAA
12634262 TATATAATTT
Statistics
Matches: 48, Mismatches: 15, Indels: 1
0.75 0.23 0.02
Matches are distributed among these distances:
30 39 0.81
31 9 0.19
ACGTcount: A:0.61, C:0.04, G:0.02, T:0.33
Consensus pattern (30 bp):
TAAAAAATCATAAATTTTAATGTTAAAAAA
Found at i:12637010 original size:26 final size:29
Alignment explanation
Indices: 12636979--12637045 Score: 79
Period size: 29 Copynumber: 2.4 Consensus size: 29
12636969 TGTATGTATT
12636979 ATATTA-ATTAAAACA-TTTAT-AA-TTAA
1 ATATTAGATTAAAA-ATTTTATAAATTTAA
* *
12637005 ATATTAGACTAAAAATTTTTTAAATTTAA
1 ATATTAGATTAAAAATTTTATAAATTTAA
12637034 ATATTAGATTAA
1 ATATTAGATTAA
12637046 TTTGGTTTCA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
26 7 0.21
27 10 0.29
28 2 0.06
29 15 0.44
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.43
Consensus pattern (29 bp):
ATATTAGATTAAAAATTTTATAAATTTAA
Found at i:12637930 original size:62 final size:61
Alignment explanation
Indices: 12637841--12638097 Score: 225
Period size: 61 Copynumber: 4.2 Consensus size: 61
12637831 GAAATTACTA
* *
12637841 AAGGCATTTTTAACC-AAAACGCCTTCAATAATCCCATCTA-AAAAATTAAAAAGGATTATTC
1 AAGG-ATTTTTAGCCAAAAACGCCTTCAATAATCCCAT-TATAAAAATTGAAAAGGATTATTC
* *
12637902 AAGGTATTTTTAGCCAAAAACGCCTTCAATAATCCACA-CATAAAAATTTAAAAGGATTATTC
1 AAGG-ATTTTTAGCCAAAAACGCCTTCAATAATCC-CATTATAAAAATTGAAAAGGATTATTC
** * * * * * * ** * *
12637964 AAGGCGTTTTAGCTAGAGATGCCTTCAATAAACCCATTCA-ATATTTTGTAAGGGATTATTC
1 AAGGATTTTTAGCCAAAAACGCCTTCAATAATCCCATT-ATAAAAATTGAAAAGGATTATTC
* * * **
12638025 AAGGTATTTTTTAGCTAAAAATGCCTTCAATAATCCCCTTATAAAAATTGAAGGGGATTATTC
1 AAGG-A-TTTTTAGCCAAAAACGCCTTCAATAATCCCATTATAAAAATTGAAAAGGATTATTC
*
12638088 AAAGATTTTT
1 AAGGATTTTT
12638098 TTTATCATAA
Statistics
Matches: 158, Mismatches: 30, Indels: 16
0.77 0.15 0.08
Matches are distributed among these distances:
60 2 0.01
61 61 0.39
62 46 0.29
63 49 0.31
ACGTcount: A:0.39, C:0.16, G:0.12, T:0.32
Consensus pattern (61 bp):
AAGGATTTTTAGCCAAAAACGCCTTCAATAATCCCATTATAAAAATTGAAAAGGATTATTC
Found at i:12638082 original size:63 final size:61
Alignment explanation
Indices: 12637856--12638098 Score: 222
Period size: 62 Copynumber: 3.9 Consensus size: 61
12637846 ATTTTTAACC
* *
12637856 AAAACGCCTTCAATAATCCCATCTAAAAAATTAAAAAGGATTATTCAAGG-TATTTTTAGCCA
1 AAAACGCCTTCAATAATCCCAT-TAAAAAATTGAAAAGGATTATTCAAGGAT-TTTTTAGCTA
* * **
12637918 AAAACGCCTTCAATAATCCACA-CATAAAAATTTAAAAGGATTATTCAAGG-CGTTTTAGCTA
1 AAAACGCCTTCAATAATCC-CATTA-AAAAATTGAAAAGGATTATTCAAGGATTTTTTAGCTA
* * * * * ** * *
12637979 GAGATGCCTTCAATAAACCCATTCAATATTTTGTAAGGGATTATTCAAGGTATTTTTTAGCTA
1 AAAACGCCTTCAATAATCCCATT-AAAAAATTGAAAAGGATTATTCAAGG-ATTTTTTAGCTA
* * ** *
12638042 AAAATGCCTTCAATAATCCCCTTATAAAAATTGAAGGGGATTATTCAAAGATTTTTT
1 AAAACGCCTTCAATAATCCCATTA-AAAAATTGAAAAGGATTATTCAAGGATTTTTT
12638099 TTATCATAAA
Statistics
Matches: 146, Mismatches: 28, Indels: 14
0.78 0.15 0.07
Matches are distributed among these distances:
60 2 0.01
61 43 0.29
62 52 0.36
63 49 0.34
ACGTcount: A:0.39, C:0.16, G:0.12, T:0.33
Consensus pattern (61 bp):
AAAACGCCTTCAATAATCCCATTAAAAAATTGAAAAGGATTATTCAAGGATTTTTTAGCTA
Found at i:12638099 original size:63 final size:61
Alignment explanation
Indices: 12637856--12638099 Score: 222
Period size: 63 Copynumber: 3.9 Consensus size: 61
12637846 ATTTTTAACC
* * *
12637856 AAAACGCCTTCAATAATCCCATCTAAAAAATTAAAAAGGATTATTCAAGGTATTTTTAGCCA
1 AAAACGCCTTCAATAATCCCAT-TAAAAAATTGAAAAGGATTATTCAAGGTTTTTTTAGCTA
* * **
12637918 AAAACGCCTTCAATAATCCACA-CATAAAAATTTAAAAGGATTATTCAAGG-CGTTTTAGCTA
1 AAAACGCCTTCAATAATCC-CATTA-AAAAATTGAAAAGGATTATTCAAGGTTTTTTTAGCTA
* * * * * ** * *
12637979 GAGATGCCTTCAATAAACCCATTCAATATTTTGTAAGGGATTATTCAAGGTATTTTTTAGCTA
1 AAAACGCCTTCAATAATCCCATT-AAAAAATTGAAAAGGATTATTCAAGGT-TTTTTTAGCTA
* * ** *
12638042 AAAATGCCTTCAATAATCCCCTTATAAAAATTGAAGGGGATTATTCAAAGATTTTTTT
1 AAAACGCCTTCAATAATCCCATTA-AAAAATTGAAAAGGATTATTC-AAGGTTTTTTT
12638100 TATCATAAAC
Statistics
Matches: 146, Mismatches: 28, Indels: 15
0.77 0.15 0.08
Matches are distributed among these distances:
60 2 0.01
61 43 0.29
62 45 0.31
63 52 0.36
64 4 0.03
ACGTcount: A:0.39, C:0.16, G:0.12, T:0.33
Consensus pattern (61 bp):
AAAACGCCTTCAATAATCCCATTAAAAAATTGAAAAGGATTATTCAAGGTTTTTTTAGCTA
Found at i:12638420 original size:24 final size:25
Alignment explanation
Indices: 12638379--12638425 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 25
12638369 CCATATAAGC
*
12638379 TATCAATTGATATAAAACAAATATA
1 TATCAATTAATATAAAACAAATATA
* *
12638404 TATCAA-TAATATTAAACCAATA
1 TATCAATTAATATAAAACAAATA
12638426 CCCCAATCTA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 13 0.68
25 6 0.32
ACGTcount: A:0.55, C:0.11, G:0.02, T:0.32
Consensus pattern (25 bp):
TATCAATTAATATAAAACAAATATA
Found at i:12640209 original size:20 final size:20
Alignment explanation
Indices: 12640184--12640228 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
12640174 TAACAAATCT
* *
12640184 ATACAAGTATAAAGTC-ATGC
1 ATACAAGCACAAAGTCGAT-C
12640204 ATACAAGCACAAAGTCGATC
1 ATACAAGCACAAAGTCGATC
12640224 ATACA
1 ATACA
12640229 TGATATAATG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 20 0.91
21 2 0.09
ACGTcount: A:0.47, C:0.20, G:0.13, T:0.20
Consensus pattern (20 bp):
ATACAAGCACAAAGTCGATC
Found at i:12646470 original size:16 final size:17
Alignment explanation
Indices: 12646438--12646475 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
12646428 ATTATTTTTT
12646438 AAATAATTTTATGTTCA
1 AAATAATTTTATGTTCA
*
12646455 AAATTATTTT-TGTTCA
1 AAATAATTTTATGTTCA
*
12646471 CAATA
1 AAATA
12646476 TAAATAATTT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
16 9 0.50
17 9 0.50
ACGTcount: A:0.39, C:0.08, G:0.05, T:0.47
Consensus pattern (17 bp):
AAATAATTTTATGTTCA
Found at i:12647929 original size:21 final size:21
Alignment explanation
Indices: 12647840--12647931 Score: 78
Period size: 21 Copynumber: 4.2 Consensus size: 21
12647830 TTTAAATATA
*
12647840 TATTATTA-ATTATTTTAATTT
1 TATTATTATAATA-TTTAATTT
* * *
12647861 TATCACTATAATATCTAATTT
1 TATTATTATAATATTTAATTT
* *
12647882 TATTATTATGATAATTAACTTCAT
1 TATTATTATAATATTTAA-TT--T
*
12647906 TATTATTATAATTTTTAATTT
1 TATTATTATAATATTTAATTT
12647927 TATTA
1 TATTA
12647932 AAATTAATCT
Statistics
Matches: 55, Mismatches: 12, Indels: 8
0.73 0.16 0.11
Matches are distributed among these distances:
21 32 0.58
22 5 0.09
23 2 0.04
24 16 0.29
ACGTcount: A:0.36, C:0.05, G:0.01, T:0.58
Consensus pattern (21 bp):
TATTATTATAATATTTAATTT
Found at i:12648685 original size:19 final size:19
Alignment explanation
Indices: 12648648--12648688 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
12648638 TTTATTAATG
*
12648648 AATAAATATAAAATCTTAA
1 AATAAATATAAAATATTAA
12648667 AATAAATATATAAA-ATTAA
1 AATAAATATA-AAATATTAA
12648686 AAT
1 AAT
12648689 TTTTAAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 17 0.85
20 3 0.15
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (19 bp):
AATAAATATAAAATATTAA
Found at i:12649545 original size:9 final size:10
Alignment explanation
Indices: 12649524--12649556 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
12649514 AACTAAAAAT
12649524 AAAATTTTGA
1 AAAATTTTGA
12649534 AAAATTTT-A
1 AAAATTTTGA
12649543 AAAATTATTGA
1 AAAATT-TTGA
12649554 AAA
1 AAA
12649557 TAAAAAAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 7 0.33
10 10 0.48
11 4 0.19
ACGTcount: A:0.58, C:0.00, G:0.06, T:0.36
Consensus pattern (10 bp):
AAAATTTTGA
Found at i:12651003 original size:21 final size:21
Alignment explanation
Indices: 12650978--12651031 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
12650968 CAATGATAGA
* *
12650978 AATAAAATTAATTACTATAAT
1 AATAAAATTAAATACTATAAC
12650999 AATAAAATTAAATACTATAAC
1 AATAAAATTAAATACTATAAC
*
12651020 GATAAAATTAAA
1 AATAAAATTAAA
12651032 ATCAGTGATA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.61, C:0.06, G:0.02, T:0.31
Consensus pattern (21 bp):
AATAAAATTAAATACTATAAC
Found at i:12651284 original size:24 final size:23
Alignment explanation
Indices: 12651213--12651281 Score: 104
Period size: 24 Copynumber: 2.9 Consensus size: 23
12651203 AGAATGCATA
12651213 TTATTTATTATATAATAATAAATT
1 TTATTTA-TATATAATAATAAATT
12651237 TTATTTATCATATAATAATAAATT
1 TTATTTAT-ATATAATAATAAATT
12651261 TTATTTATAT-TAATTAATAAA
1 TTATTTATATATAA-TAATAAA
12651282 ATTATTTTAA
Statistics
Matches: 43, Mismatches: 0, Indels: 5
0.90 0.00 0.10
Matches are distributed among these distances:
22 3 0.07
23 10 0.23
24 30 0.70
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.52
Consensus pattern (23 bp):
TTATTTATATATAATAATAAATT
Found at i:12651382 original size:1 final size:1
Alignment explanation
Indices: 12651366--12651399 Score: 50
Period size: 1 Copynumber: 34.0 Consensus size: 1
12651356 CATTAAGGGC
* *
12651366 AAAAAAGAAAAGAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
12651400 CAATGGACAA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
1 29 1.00
ACGTcount: A:0.94, C:0.00, G:0.06, T:0.00
Consensus pattern (1 bp):
A
Found at i:12660334 original size:18 final size:18
Alignment explanation
Indices: 12660311--12660346 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
12660301 AATTTATTTC
*
12660311 GATAAAATTAAAAATAAT
1 GATAAAAATAAAAATAAT
*
12660329 GATAAAAATAAAATTAAT
1 GATAAAAATAAAAATAAT
12660347 TATTGTAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.67, C:0.00, G:0.06, T:0.28
Consensus pattern (18 bp):
GATAAAAATAAAAATAAT
Found at i:12660886 original size:2 final size:2
Alignment explanation
Indices: 12660879--12660911 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
12660869 TGGGCCTTGA
12660879 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
12660912 ACAATAAGCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:12661819 original size:2 final size:2
Alignment explanation
Indices: 12661812--12661841 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
12661802 TCTAATATGC
*
12661812 AT AT AT AT AT AT AT AT AT AT AT TT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
12661842 TCAGACATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:12665149 original size:2 final size:2
Alignment explanation
Indices: 12665142--12665171 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
12665132 GTTTCAATTA
12665142 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
12665172 GCTTGTGCAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:12668302 original size:12 final size:12
Alignment explanation
Indices: 12668269--12668307 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
12668259 AAGTGAGAGT
*
12668269 AGCGGGAGTGGT
1 AGCGGGAGTGGG
* *
12668281 AGTGGAAGTGGG
1 AGCGGGAGTGGG
12668293 AGCGGGAGTGGG
1 AGCGGGAGTGGG
12668305 AGC
1 AGC
12668308 AGTAGTAGTG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.21, C:0.08, G:0.59, T:0.13
Consensus pattern (12 bp):
AGCGGGAGTGGG
Found at i:12673382 original size:14 final size:15
Alignment explanation
Indices: 12673348--12673386 Score: 53
Period size: 16 Copynumber: 2.6 Consensus size: 15
12673338 ATTTTTTAGG
*
12673348 TAATTTATAAAATTA
1 TAATTTAAAAAATTA
12673363 TAAATTTAAAAAATT-
1 T-AATTTAAAAAATTA
12673378 TAATTTAAA
1 TAATTTAAA
12673387 TTTGAATCGA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
14 8 0.36
15 2 0.09
16 12 0.55
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
TAATTTAAAAAATTA
Found at i:12674959 original size:13 final size:13
Alignment explanation
Indices: 12674940--12674975 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
12674930 ATTTTTTATT
12674940 TAAATTTAATATA
1 TAAATTTAATATA
* *
12674953 TATATTTAATATT
1 TAAATTTAATATA
12674966 TAAATTTAAT
1 TAAATTTAAT
12674976 TCAAATCAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (13 bp):
TAAATTTAATATA
Found at i:12675183 original size:10 final size:10
Alignment explanation
Indices: 12675168--12675201 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
12675158 TCGATAATAA
12675168 AAAATATATT
1 AAAATATATT
*
12675178 AAAATAT-TA
1 AAAATATATT
12675187 AAAATATATT
1 AAAATATATT
12675197 AAAAT
1 AAAAT
12675202 TACTTTTTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
9 8 0.38
10 13 0.62
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (10 bp):
AAAATATATT
Found at i:12675662 original size:31 final size:31
Alignment explanation
Indices: 12675613--12675676 Score: 78
Period size: 31 Copynumber: 2.1 Consensus size: 31
12675603 AACAATTATT
* *
12675613 TTATATTTACATTTATTTAAATATATT-AAAAA
1 TTATATTTACAATAATTTAAA-AT-TTCAAAAA
12675645 TTATA-TTACAATAATTTAAAATTTCAAAAA
1 TTATATTTACAATAATTTAAAATTTCAAAAA
12675675 TT
1 TT
12675677 TAAAATTTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
29 2 0.07
30 9 0.31
31 13 0.45
32 5 0.17
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.47
Consensus pattern (31 bp):
TTATATTTACAATAATTTAAAATTTCAAAAA
Found at i:12675667 original size:21 final size:20
Alignment explanation
Indices: 12675625--12675667 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
12675615 ATATTTACAT
12675625 TTATTTAAATATATTAAAAA
1 TTATTTAAATATATTAAAAA
*
12675645 TTATATTACAATA-ATTTAAAA
1 TTAT-TTA-AATATATTAAAAA
12675666 TT
1 TT
12675668 TCAAAAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 4 0.20
21 12 0.60
22 4 0.20
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (20 bp):
TTATTTAAATATATTAAAAA
Found at i:12676869 original size:3 final size:3
Alignment explanation
Indices: 12676863--12676900 Score: 67
Period size: 3 Copynumber: 12.7 Consensus size: 3
12676853 AGCATTAGAG
*
12676863 GAA GAA GAA GAA GAA GAA GAA GAA GAA AAA GAA GAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
12676901 GGAAAGTGGA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:12683074 original size:26 final size:26
Alignment explanation
Indices: 12683045--12683116 Score: 126
Period size: 26 Copynumber: 2.8 Consensus size: 26
12683035 GTGATCCTTG
12683045 TATGGAAGAAAGAAAAGAGATCATTT
1 TATGGAAGAAAGAAAAGAGATCATTT
*
12683071 TATGGAAGAAAGAAAAGAGATCCTTT
1 TATGGAAGAAAGAAAAGAGATCATTT
*
12683097 TATGGAAGAAAGGAAAGAGA
1 TATGGAAGAAAGAAAAGAGA
12683117 ATGGGGGGGT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.50, C:0.04, G:0.26, T:0.19
Consensus pattern (26 bp):
TATGGAAGAAAGAAAAGAGATCATTT
Found at i:12690963 original size:40 final size:41
Alignment explanation
Indices: 12690863--12690965 Score: 109
Period size: 40 Copynumber: 2.5 Consensus size: 41
12690853 ACAAAAACTA
** * *
12690863 CGTTTTTTATCTTAAAAAAATCGTTCTTTGAACAAAGGTTG
1 CGTTTTTTATCTTAAAAATGTCGTTATTTCAACAAAGGTTG
* * * **
12690904 CATTTTCTATTTTGGAAATGTC-TTATTTCAACAAAGGTTG
1 CGTTTTTTATCTTAAAAATGTCGTTATTTCAACAAAGGTTG
*
12690944 TGTTTTTTATCTTAAAAATGTC
1 CGTTTTTTATCTTAAAAATGTC
12690966 ATTTTTTTAT
Statistics
Matches: 47, Mismatches: 15, Indels: 1
0.75 0.24 0.02
Matches are distributed among these distances:
40 32 0.68
41 15 0.32
ACGTcount: A:0.29, C:0.12, G:0.14, T:0.46
Consensus pattern (41 bp):
CGTTTTTTATCTTAAAAATGTCGTTATTTCAACAAAGGTTG
Found at i:12691620 original size:37 final size:38
Alignment explanation
Indices: 12691570--12691650 Score: 112
Period size: 37 Copynumber: 2.2 Consensus size: 38
12691560 TCCATAACAA
* * * *
12691570 ATTTTAAGTATAATAATATTAAGTAAATATATTTTA-G
1 ATTTTATGTATAATAATATGAAATAAAGATATTTTATG
12691607 ATTTTATGTATAATAATATGAAATAAAGATATTTTATG
1 ATTTTATGTATAATAATATGAAATAAAGATATTTTATG
12691645 -TTTTAT
1 ATTTTAT
12691651 TTTTCATATT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
37 38 0.97
38 1 0.03
ACGTcount: A:0.43, C:0.00, G:0.09, T:0.48
Consensus pattern (38 bp):
ATTTTATGTATAATAATATGAAATAAAGATATTTTATG
Found at i:12691727 original size:41 final size:42
Alignment explanation
Indices: 12691677--12691770 Score: 118
Period size: 41 Copynumber: 2.3 Consensus size: 42
12691667 AAAAATTACG
* * *
12691677 TTTCTATCTTATAAACATTGTCTTTTCAAC-AAAGATTGTAT
1 TTTCTATCTTAGAAACATTATCTTTCCAACAAAAGATTGTAT
* ** *
12691718 TTTTTATCTTAGAAATGTTATCTTTCCAACAAAAGATTGTGT
1 TTTCTATCTTAGAAACATTATCTTTCCAACAAAAGATTGTAT
12691760 TTTCTATCTTA
1 TTTCTATCTTA
12691771 AAAATGTTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
41 24 0.55
42 20 0.45
ACGTcount: A:0.30, C:0.14, G:0.09, T:0.48
Consensus pattern (42 bp):
TTTCTATCTTAGAAACATTATCTTTCCAACAAAAGATTGTAT
Found at i:12691768 original size:42 final size:41
Alignment explanation
Indices: 12691677--12691778 Score: 123
Period size: 42 Copynumber: 2.5 Consensus size: 41
12691667 AAAAATTACG
* ** * *
12691677 TTTCTATCTTATAAACATTGTCTTTTCAACAAAGATTGTAT
1 TTTCTATCTTAAAAATGTTATCTTTCCAACAAAGATTGTAT
* * *
12691718 TTTTTATCTTAGAAATGTTATCTTTCCAACAAAAGATTGTGT
1 TTTCTATCTTAAAAATGTTATCTTTCCAAC-AAAGATTGTAT
12691760 TTTCTATCTTAAAAATGTT
1 TTTCTATCTTAAAAATGTT
12691779 GTTTTGTTGA
Statistics
Matches: 51, Mismatches: 9, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
41 24 0.47
42 27 0.53
ACGTcount: A:0.31, C:0.13, G:0.09, T:0.47
Consensus pattern (41 bp):
TTTCTATCTTAAAAATGTTATCTTTCCAACAAAGATTGTAT
Found at i:12692873 original size:14 final size:14
Alignment explanation
Indices: 12692854--12692906 Score: 61
Period size: 14 Copynumber: 3.7 Consensus size: 14
12692844 TTGTACTTTG
12692854 TTAATTTTTAAAAT
1 TTAATTTTTAAAAT
* *
12692868 TTAATTATTATAAT
1 TTAATTTTTAAAAT
* *
12692882 ATAATTTATATAAAT
1 TTAATTTTTA-AAAT
12692897 TTAATTTTTA
1 TTAATTTTTA
12692907 TACTATTTTA
Statistics
Matches: 30, Mismatches: 8, Indels: 1
0.77 0.21 0.03
Matches are distributed among these distances:
14 19 0.63
15 11 0.37
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (14 bp):
TTAATTTTTAAAAT
Found at i:12696781 original size:2 final size:2
Alignment explanation
Indices: 12696774--12696799 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
12696764 TAATATGAAG
12696774 CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT
12696800 ATAATTTCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:12698717 original size:19 final size:19
Alignment explanation
Indices: 12698693--12698730 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
12698683 CGGGTCCCAA
12698693 AGTCGCGTAGGTTCGAAGC
1 AGTCGCGTAGGTTCGAAGC
12698712 AGTCGCGTAGGTTCGAAGC
1 AGTCGCGTAGGTTCGAAGC
12698731 TTAAGTCTCG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.21, C:0.21, G:0.37, T:0.21
Consensus pattern (19 bp):
AGTCGCGTAGGTTCGAAGC
Found at i:12699115 original size:86 final size:86
Alignment explanation
Indices: 12699002--12699172 Score: 252
Period size: 86 Copynumber: 2.0 Consensus size: 86
12698992 TCGATCCATA
* * *
12699002 CCAAGCACCTTAAGGAAGGTAGGCAGGGTGGCCAGCCTCCGTGACAAGGGCGTCATGAGGTTGGG
1 CCAAGCACCTCAAGGAAGGTAAGCAGGGTGGCCAGCCTCCGTGACAAGGGCGTCACGAGGTTGGG
12699067 TGGGGGAGAATGTCACGGACG
66 TGGGGGAGAATGTCACGGACG
* * ** * * *
12699088 CCAAGCACCTCGAGGGAGGTAAGCAGGGTGGTTAGCTTCCTTGACGAGGGCGTCACGAGGTTGGG
1 CCAAGCACCTCAAGGAAGGTAAGCAGGGTGGCCAGCCTCCGTGACAAGGGCGTCACGAGGTTGGG
12699153 TGGGGGAGAATGTCACGGAC
66 TGGGGGAGAATGTCACGGAC
12699173 CTAAAGGAAG
Statistics
Matches: 75, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
86 75 1.00
ACGTcount: A:0.22, C:0.20, G:0.41, T:0.16
Consensus pattern (86 bp):
CCAAGCACCTCAAGGAAGGTAAGCAGGGTGGCCAGCCTCCGTGACAAGGGCGTCACGAGGTTGGG
TGGGGGAGAATGTCACGGACG
Found at i:12702813 original size:63 final size:65
Alignment explanation
Indices: 12702686--12702813 Score: 188
Period size: 65 Copynumber: 2.0 Consensus size: 65
12702676 TCTCTCATTT
* * * * *
12702686 CATCGATCTTTCTCTAGCTTATTCGATTAGATAATACCTTCCTTGGTTTCATTTCTTAGCATTAA
1 CATCAATCTTTCTCTAACTTATTCCATTAGATAATACCTTCCTTGGCTTCATTTCTCAGCATTAA
*
12702751 CATCAATCTTTCTCTAACTTATTCCATTAGAT-A-ACCTTTCTTGGCTTCATTTCTCAGCATTAA
1 CATCAATCTTTCTCTAACTTATTCCATTAGATAATACCTTCCTTGGCTTCATTTCTCAGCATTAA
12702814 GCAAATCATT
Statistics
Matches: 57, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
63 27 0.47
64 1 0.02
65 29 0.51
ACGTcount: A:0.24, C:0.23, G:0.09, T:0.44
Consensus pattern (65 bp):
CATCAATCTTTCTCTAACTTATTCCATTAGATAATACCTTCCTTGGCTTCATTTCTCAGCATTAA
Found at i:12709438 original size:16 final size:16
Alignment explanation
Indices: 12709417--12709447 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
12709407 ACGGTTTTAG
12709417 ATTTTGGAGTTTTGGA
1 ATTTTGGAGTTTTGGA
*
12709433 ATTTTGGGGTTTTGG
1 ATTTTGGAGTTTTGG
12709448 TTTGAGTTTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.13, C:0.00, G:0.35, T:0.52
Consensus pattern (16 bp):
ATTTTGGAGTTTTGGA
Found at i:12709483 original size:21 final size:20
Alignment explanation
Indices: 12709434--12709486 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 20
12709424 AGTTTTGGAA
*
12709434 TTTTGGGGTTTTGGTTTGAG
1 TTTTAGGGTTTTGGTTTGAG
*
12709454 TTTCAAGGGTTTTAGGATTTG-G
1 TTT-TAGGGTTTT-GG-TTTGAG
12709476 TTTTAGGGTTT
1 TTTTAGGGTTT
12709487 AGAGAGTTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
20 3 0.11
21 14 0.52
22 6 0.22
23 4 0.15
ACGTcount: A:0.11, C:0.02, G:0.34, T:0.53
Consensus pattern (20 bp):
TTTTAGGGTTTTGGTTTGAG
Found at i:12709497 original size:17 final size:15
Alignment explanation
Indices: 12709462--12709553 Score: 61
Period size: 14 Copynumber: 6.3 Consensus size: 15
12709452 AGTTTCAAGG
*
12709462 GTTTTAGGATTTG--
1 GTTTTAGGGTTTGAA
12709475 GTTTTAGGGTTTAGAGA
1 GTTTTAGGGTTT-GA-A
*
12709492 GTTTTAGGGCTTGAA
1 GTTTTAGGGTTTGAA
*
12709507 -TTTTAGGGTTTGGA
1 GTTTTAGGGTTTGAA
* *
12709521 -TTTTAGAGTTTTAAA
1 GTTTTAG-GGTTTGAA
*
12709536 G-TTAAGGGTTTGAA
1 GTTTTAGGGTTTGAA
12709550 -TTTT
1 GTTTT
12709554 TTTAATATTT
Statistics
Matches: 61, Mismatches: 11, Indels: 13
0.72 0.13 0.15
Matches are distributed among these distances:
13 11 0.18
14 27 0.44
15 10 0.16
16 2 0.03
17 11 0.18
ACGTcount: A:0.22, C:0.01, G:0.29, T:0.48
Consensus pattern (15 bp):
GTTTTAGGGTTTGAA
Found at i:12709669 original size:16 final size:16
Alignment explanation
Indices: 12709634--12709671 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
12709624 ATTTTTATGA
*
12709634 TTTTTTTTAAAACTAT
1 TTTTTTTTAAAACAAT
12709650 TTTTTTTTAAAA-AAT
1 TTTTTTTTAAAACAAT
12709665 CTTTTTT
1 -TTTTTT
12709672 ATGAGAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 2 0.10
16 18 0.90
ACGTcount: A:0.29, C:0.05, G:0.00, T:0.66
Consensus pattern (16 bp):
TTTTTTTTAAAACAAT
Found at i:12711271 original size:15 final size:14
Alignment explanation
Indices: 12711251--12711290 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 14
12711241 ACCCTACCTT
12711251 TTATTTTTTTTCAAA
1 TTATTTTTTTT-AAA
12711266 TTATTTTTTTTAAA
1 TTATTTTTTTTAAA
12711280 TATATATTTTT
1 T-TAT-TTTTT
12711291 ATTTATTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 4 0.17
15 14 0.61
16 5 0.22
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.70
Consensus pattern (14 bp):
TTATTTTTTTTAAA
Found at i:12717601 original size:22 final size:22
Alignment explanation
Indices: 12717559--12717601 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
12717549 TAATTTATTT
* *
12717559 ATTAAACAAACATTCAAATGTA
1 ATTAAACAAAAATTAAAATGTA
12717581 ATTAAA-AAAAATTAAATATGT
1 ATTAAACAAAAATTAAA-ATGT
12717602 TCACAAATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.58, C:0.07, G:0.05, T:0.30
Consensus pattern (22 bp):
ATTAAACAAAAATTAAAATGTA
Found at i:12718885 original size:57 final size:56
Alignment explanation
Indices: 12718797--12718912 Score: 189
Period size: 57 Copynumber: 2.1 Consensus size: 56
12718787 ATATCAAGTG
* *
12718797 TTATGAAAGTTATTGTTATTTATGTGTCATTAATGATAATATACT-GAAAGATTTTA
1 TTATGAAAGTTATCGTTATTTATGTGTCATTAATGACAATATACTAG-AAGATTTTA
12718853 TTATGAAAGTTATGCGTTATTTATGTGTCATTAATGACAATATACTAGAAGATTTTA
1 TTATGAAAGTTAT-CGTTATTTATGTGTCATTAATGACAATATACTAGAAGATTTTA
12718910 TTA
1 TTA
12718913 CGTAATCTTA
Statistics
Matches: 56, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
56 13 0.23
57 42 0.75
58 1 0.02
ACGTcount: A:0.35, C:0.05, G:0.15, T:0.45
Consensus pattern (56 bp):
TTATGAAAGTTATCGTTATTTATGTGTCATTAATGACAATATACTAGAAGATTTTA
Found at i:12719006 original size:17 final size:16
Alignment explanation
Indices: 12718984--12719027 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
12718974 CTAAAAATCA
12718984 TACTTTTTCTTTAATAT
1 TACTTTTTCTTTAA-AT
*
12719001 TACTTTTTC-CTAAAT
1 TACTTTTTCTTTAAAT
*
12719016 CACTTTTTCTTT
1 TACTTTTTCTTT
12719028 CAAAATTTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
15 10 0.43
16 4 0.17
17 9 0.39
ACGTcount: A:0.20, C:0.18, G:0.00, T:0.61
Consensus pattern (16 bp):
TACTTTTTCTTTAAAT
Found at i:12719805 original size:112 final size:112
Alignment explanation
Indices: 12719590--12719808 Score: 262
Period size: 112 Copynumber: 2.0 Consensus size: 112
12719580 GTAAAAAAAA
* ** *
12719590 ATTTATAACTAGTCAAATATTGTATTTTTTTCAAAGAAATGCTGTAAATAATCATAATTATTATA
1 ATTTATAACTAGTCAAATATTATATTTTTTTCAAAGAAATGCAATAAATAATCATAATTACTATA
*
12719655 TTTCAAAACTTACAAACACAATATTCGAGTAAAAAAATATAAATAAG
66 TTTCAAAACTTACAAACACAATATTCAAGTAAAAAAATATAAATAAG
* * * *
12719702 ATTTATAAGTTGTCAACTATTATGTTTTTGTTCAAAGAAATGCAATAAATAATC-TCAATTACTA
1 ATTTATAACTAGTCAAATATTATATTTTT-TTCAAAGAAATGCAATAAATAATCAT-AATTACTA
* * * ** * *
12719766 TGTTTCAAATCTTTC-AATGCAGTATTCAAGTAAGAAAATATAA
64 TATTTCAAAACTTACAAACACAATATTCAAGTAAAAAAATATAA
12719809 TAAAAGTACT
Statistics
Matches: 89, Mismatches: 16, Indels: 4
0.82 0.15 0.04
Matches are distributed among these distances:
112 48 0.54
113 41 0.46
ACGTcount: A:0.44, C:0.11, G:0.09, T:0.37
Consensus pattern (112 bp):
ATTTATAACTAGTCAAATATTATATTTTTTTCAAAGAAATGCAATAAATAATCATAATTACTATA
TTTCAAAACTTACAAACACAATATTCAAGTAAAAAAATATAAATAAG
Found at i:12726156 original size:113 final size:113
Alignment explanation
Indices: 12725988--12726254 Score: 318
Period size: 111 Copynumber: 2.4 Consensus size: 113
12725978 GTCTTATTTG
* * * * * * *
12725988 TTAAAAATATGAAAACAT-TATTTTTCAAAATTTAACAAGGATGATGTTT-T-TA-ACATAA-A-
1 TTAAAAATATAAAAAAATATATTTTTCAAAATTCAACAAAGATGATATTTGTATATAGAAAACAT
* * * * * *
12726047 AAT-TTTGTTAAAAAGATGATGTTTCTATGATAAAAATGTAGTTTTTC
66 AATGTTTATTAAAAAGACGATATTTCTAAGATAAAAACGTAATTTTTC
*
12726094 TTAAAAATAT-TAAAAA-ATATTTTTCAAAATTCAACAAAGATGATATTTGTATATAGAAAACAT
1 TTAAAAATATAAAAAAATATATTTTTCAAAATTCAACAAAGATGATATTTGTATATAGAAAACAT
* * *
12726157 AGTGTTTATTAAAAATACGATATTTCTAAGATAAAAACGTAATTTTTG
66 AATGTTTATTAAAAAGACGATATTTCTAAGATAAAAACGTAATTTTTC
12726205 TTAAAAATATAAAAAAATATATTTTTCAAAATTCAACAAAGATGATATTT
1 TTAAAAATATAAAAAAATATATTTTTCAAAATTCAACAAAGATGATATTT
12726255 TAAAGATAGA
Statistics
Matches: 135, Mismatches: 17, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
105 32 0.24
106 11 0.08
107 2 0.01
108 4 0.03
109 1 0.01
110 2 0.01
111 46 0.34
112 5 0.04
113 32 0.24
ACGTcount: A:0.47, C:0.06, G:0.09, T:0.38
Consensus pattern (113 bp):
TTAAAAATATAAAAAAATATATTTTTCAAAATTCAACAAAGATGATATTTGTATATAGAAAACAT
AATGTTTATTAAAAAGACGATATTTCTAAGATAAAAACGTAATTTTTC
Found at i:12726314 original size:113 final size:113
Alignment explanation
Indices: 12726088--12726345 Score: 301
Period size: 113 Copynumber: 2.3 Consensus size: 113
12726078 AAAAATGTAG
* * *
12726088 TTTTTCTTAAAAATAT-TAAAAA-ATATTTTTCAAAATTCAACAAAGATGATATTTGTATATAGA
1 TTTTTATTAAAAATATAAAAAAATATATTTTTCAAAATTCAACAAAGATGATATTTGTAGATAGA
* * **
12726151 AAACATAGTGTTTATTAAAAATACGATATTTCTAAGATAAAAACGTAA
66 AAACATAGTATTTATTAAAAATACGATATTTCTAAGACAAAAACACAA
*
12726199 TTTTTGTTAAAAATATAAAAAAATATATTTTTCAAAATTCAACAAAGATGATATTT-TAAAGATA
1 TTTTTATTAAAAATATAAAAAAATATATTTTTCAAAATTCAACAAAGATGATATTTGT--AGATA
* * * * * *
12726263 GAAAACAT-GATATTTGTTGAAAATA-GATGTTTTTATGACAAAAGCACAA
64 GAAAACATAG-TATTTATTAAAAATACGATATTTCTAAGACAAAAACACAA
*
12726312 TTTTTATTAAAAACATGAAAAAAAATATATTTTT
1 TTTTTATTAAAAATAT--AAAAAAATATATTTTT
12726346 TCATATTTTT
Statistics
Matches: 125, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
111 15 0.12
112 6 0.05
113 64 0.51
114 24 0.19
115 16 0.13
ACGTcount: A:0.48, C:0.06, G:0.09, T:0.37
Consensus pattern (113 bp):
TTTTTATTAAAAATATAAAAAAATATATTTTTCAAAATTCAACAAAGATGATATTTGTAGATAGA
AAACATAGTATTTATTAAAAATACGATATTTCTAAGACAAAAACACAA
Found at i:12726893 original size:18 final size:19
Alignment explanation
Indices: 12726860--12726899 Score: 64
Period size: 18 Copynumber: 2.1 Consensus size: 19
12726850 ATAAAACTAA
12726860 AATATCACATATTTCCTTTC
1 AATATCACA-ATTTCCTTTC
12726880 AATATCAC-ATTTCCTTTC
1 AATATCACAATTTCCTTTC
12726898 AA
1 AA
12726900 AGTTTAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 12 0.60
20 8 0.40
ACGTcount: A:0.33, C:0.25, G:0.00, T:0.42
Consensus pattern (19 bp):
AATATCACAATTTCCTTTC
Found at i:12728639 original size:62 final size:62
Alignment explanation
Indices: 12728567--12728693 Score: 254
Period size: 62 Copynumber: 2.0 Consensus size: 62
12728557 TGGTATTGCT
12728567 ATAATTAGATACGAGGTTAGTTTGTCTTTTTTATTTTTTTATTATATATTATTGTTTTTTTA
1 ATAATTAGATACGAGGTTAGTTTGTCTTTTTTATTTTTTTATTATATATTATTGTTTTTTTA
12728629 ATAATTAGATACGAGGTTAGTTTGTCTTTTTTATTTTTTTATTATATATTATTGTTTTTTTA
1 ATAATTAGATACGAGGTTAGTTTGTCTTTTTTATTTTTTTATTATATATTATTGTTTTTTTA
12728691 ATA
1 ATA
12728694 TTTTTGTACG
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 65 1.00
ACGTcount: A:0.25, C:0.03, G:0.11, T:0.61
Consensus pattern (62 bp):
ATAATTAGATACGAGGTTAGTTTGTCTTTTTTATTTTTTTATTATATATTATTGTTTTTTTA
Found at i:12728659 original size:32 final size:32
Alignment explanation
Indices: 12728567--12728659 Score: 75
Period size: 30 Copynumber: 3.0 Consensus size: 32
12728557 TGGTATTGCT
*
12728567 ATAATTAGATACGAGGTTAGTTTGTCTTTTTT
1 ATAATTAGATACGAGGTTAGTTTGTCTTTTTA
** ** * ** *
12728599 ATTTTTTTATTA-TATATTA--TTGTTTTTTTA
1 ATAATTAGA-TACGAGGTTAGTTTGTCTTTTTA
12728629 ATAATTAGATACGAGGTTAGTTTGTCTTTTT
1 ATAATTAGATACGAGGTTAGTTTGTCTTTTT
12728660 TATTTTTTTA
Statistics
Matches: 40, Mismatches: 17, Indels: 8
0.62 0.26 0.12
Matches are distributed among these distances:
29 2 0.05
30 18 0.45
32 18 0.45
33 2 0.05
ACGTcount: A:0.25, C:0.04, G:0.14, T:0.57
Consensus pattern (32 bp):
ATAATTAGATACGAGGTTAGTTTGTCTTTTTA
Found at i:12728700 original size:17 final size:19
Alignment explanation
Indices: 12728659--12728700 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 19
12728649 TTTGTCTTTT
12728659 TTATT-TTTTTATTATATA
1 TTATTGTTTTTATTATATA
12728677 TTATTGTTTTT-TTA-ATA
1 TTATTGTTTTTATTATATA
*
12728694 TTTTTGT
1 TTATTGT
12728701 ACGTTGTCTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 9 0.41
18 8 0.36
19 5 0.23
ACGTcount: A:0.21, C:0.00, G:0.05, T:0.74
Consensus pattern (19 bp):
TTATTGTTTTTATTATATA
Found at i:12731916 original size:51 final size:51
Alignment explanation
Indices: 12731840--12731939 Score: 175
Period size: 51 Copynumber: 2.0 Consensus size: 51
12731830 GTAGAGAGGG
*
12731840 TGATCAATGATTAGGTACAAAGATTGAAATATGAGTTGAAAGTTGGTTTGA
1 TGATCAATGATTAGGTACAAAGATTGAAATATGAGGTGAAAGTTGGTTTGA
12731891 TGATCAATGATTAGGTA-AAGAGATTGAAATATGAGGTGAAAGTTGGTTT
1 TGATCAATGATTAGGTACAA-AGATTGAAATATGAGGTGAAAGTTGGTTT
12731940 TGTATATGAT
Statistics
Matches: 47, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
50 2 0.04
51 45 0.96
ACGTcount: A:0.37, C:0.03, G:0.27, T:0.33
Consensus pattern (51 bp):
TGATCAATGATTAGGTACAAAGATTGAAATATGAGGTGAAAGTTGGTTTGA
Found at i:12733820 original size:17 final size:17
Alignment explanation
Indices: 12733798--12733830 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
12733788 TGATAGAATA
12733798 AAATAAGATAATATTAT
1 AAATAAGATAATATTAT
*
12733815 AAATAAGATTATATTA
1 AAATAAGATAATATTA
12733831 AATAATATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.58, C:0.00, G:0.06, T:0.36
Consensus pattern (17 bp):
AAATAAGATAATATTAT
Found at i:12736374 original size:17 final size:17
Alignment explanation
Indices: 12736352--12736386 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
12736342 GAAAAGCACG
*
12736352 AAGAATAAGTATCAAGC
1 AAGAATAAGCATCAAGC
*
12736369 AAGAATAGGCATCAAGC
1 AAGAATAAGCATCAAGC
12736386 A
1 A
12736387 GCAAGCAACT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.51, C:0.14, G:0.20, T:0.14
Consensus pattern (17 bp):
AAGAATAAGCATCAAGC
Found at i:12736873 original size:24 final size:24
Alignment explanation
Indices: 12736845--12736892 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
12736835 GTATATTTTA
* *
12736845 TTTATGAT-TTTATTTGCATGATTT
1 TTTAT-ATATTTATTTACATAATTT
12736869 TTTATATATTTATTTACATAATTT
1 TTTATATATTTATTTACATAATTT
12736893 ATATTTTTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 2 0.10
24 19 0.90
ACGTcount: A:0.27, C:0.04, G:0.06, T:0.62
Consensus pattern (24 bp):
TTTATATATTTATTTACATAATTT
Found at i:12736915 original size:41 final size:41
Alignment explanation
Indices: 12736870--12736965 Score: 156
Period size: 41 Copynumber: 2.3 Consensus size: 41
12736860 GCATGATTTT
* *
12736870 TTATATATTTATTTACATAATTTATATTTTTAATTACATGA
1 TTATATATTTAATTACATAATTTATATTATTAATTACATGA
**
12736911 TTATATATTTAATTACATGTTTTATATTATTAATTACATGA
1 TTATATATTTAATTACATAATTTATATTATTAATTACATGA
12736952 TTATATATTTAATT
1 TTATATATTTAATT
12736966 GTATGATTAT
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.36, C:0.04, G:0.03, T:0.56
Consensus pattern (41 bp):
TTATATATTTAATTACATAATTTATATTATTAATTACATGA
Found at i:12736916 original size:20 final size:20
Alignment explanation
Indices: 12736870--12736982 Score: 129
Period size: 20 Copynumber: 5.5 Consensus size: 20
12736860 GCATGATTTT
* *
12736870 TTATATATTTATTTACATAA
1 TTATATATTTAATTACATGA
*
12736890 TTTATATTTTTAATTACATGA
1 -TTATATATTTAATTACATGA
12736911 TTATATATTTAATTACATG-
1 TTATATATTTAATTACATGA
*
12736930 TTTTATATTATTAATTACATGA
1 TTATATA-T-TTAATTACATGA
**
12736952 TTATATATTTAATTGTATGA
1 TTATATATTTAATTACATGA
*
12736972 TTATTTATTTA
1 TTATATATTTA
12736983 TTTATTTTTG
Statistics
Matches: 80, Mismatches: 9, Indels: 7
0.83 0.09 0.07
Matches are distributed among these distances:
19 6 0.08
20 39 0.49
21 29 0.36
22 6 0.08
ACGTcount: A:0.35, C:0.04, G:0.04, T:0.57
Consensus pattern (20 bp):
TTATATATTTAATTACATGA
Found at i:12737086 original size:24 final size:24
Alignment explanation
Indices: 12737053--12737114 Score: 72
Period size: 24 Copynumber: 2.6 Consensus size: 24
12737043 TTATTATTGC
*
12737053 ATGATTTTATATTTATTACAAGAT
1 ATGATATTATATTTATTACAAGAT
* *
12737077 ATGATATTATATGTTATTATATGAT
1 ATGATATTATAT-TTATTACAAGAT
*
12737102 -TAATATTATATTT
1 ATGATATTATATTT
12737115 GAATGATATC
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
23 2 0.06
24 21 0.64
25 10 0.30
ACGTcount: A:0.37, C:0.02, G:0.08, T:0.53
Consensus pattern (24 bp):
ATGATATTATATTTATTACAAGAT
Found at i:12740741 original size:1 final size:1
Alignment explanation
Indices: 12740735--12740759 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
12740725 CTTGCATAAC
12740735 TTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTT
12740760 ACAAATGAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:12740939 original size:2 final size:2
Alignment explanation
Indices: 12740934--12740964 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
12740924 ACACACACAC
12740934 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
12740965 CATACCATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:12747197 original size:99 final size:101
Alignment explanation
Indices: 12747050--12747233 Score: 282
Period size: 102 Copynumber: 1.8 Consensus size: 101
12747040 GTCACCTCTA
* * * *
12747050 AAAGGTGACTACATGAACTACCTCAGAAGCTAATTACAATCCATAAAAGCAG-AACTCTACTTTC
1 AAAGGTGACTACACGAACCACCTCAGAAACTAATTACAATCCATAAAAGCAGAAACTCTACTTTA
12747114 ATGAATGTCCCACGCTGGCTATCATTCATTCCAAAT
66 ATGAATGTCCCACGCTGGCTATCATTCATTCCAAAT
*
12747150 AAAGGTGACTACACGAACCACCTCA-AAACTAATTATAATCCATAAAAGCAGCAAAACTCTACTT
1 AAAGGTGACTACACGAACCACCTCAGAAACTAATTACAATCCATAAAAGCAG--AAACTCTACTT
*
12747214 TAATGAATGTCCCATGCTGG
64 TAATGAATGTCCCACGCTGG
12747234 TCAATATCAT
Statistics
Matches: 75, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
99 24 0.32
100 23 0.31
102 28 0.37
ACGTcount: A:0.38, C:0.24, G:0.13, T:0.24
Consensus pattern (101 bp):
AAAGGTGACTACACGAACCACCTCAGAAACTAATTACAATCCATAAAAGCAGAAACTCTACTTTA
ATGAATGTCCCACGCTGGCTATCATTCATTCCAAAT
Found at i:12749743 original size:19 final size:20
Alignment explanation
Indices: 12749712--12749750 Score: 71
Period size: 19 Copynumber: 2.0 Consensus size: 20
12749702 ACATATTTAT
12749712 TAAAATATATTAAAAAATAA
1 TAAAATATATTAAAAAATAA
12749732 TAAAAT-TATTAAAAAATAA
1 TAAAATATATTAAAAAATAA
12749751 AATGTGTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (20 bp):
TAAAATATATTAAAAAATAA
Found at i:12753113 original size:22 final size:22
Alignment explanation
Indices: 12753088--12753135 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
12753078 TCGTGTAGAA
* *
12753088 TTTTGAATAAGTCTTGATGTGC
1 TTTTGAATAAGTCTAGATATGC
12753110 TTTTGAATAAGTCTAGATATGC
1 TTTTGAATAAGTCTAGATATGC
12753132 TTTT
1 TTTT
12753136 CATTGACTGC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.25, C:0.08, G:0.19, T:0.48
Consensus pattern (22 bp):
TTTTGAATAAGTCTAGATATGC
Found at i:12764729 original size:16 final size:17
Alignment explanation
Indices: 12764708--12764743 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
12764698 TCATTAAAAA
*
12764708 TTATG-AAAATTTAAAT
1 TTATGAAAAAATTAAAT
12764724 TTATGAAAAAATTAAAT
1 TTATGAAAAAATTAAAT
12764741 TTA
1 TTA
12764744 ATAATATATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 5 0.28
17 13 0.72
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.42
Consensus pattern (17 bp):
TTATGAAAAAATTAAAT
Found at i:12764920 original size:3 final size:3
Alignment explanation
Indices: 12764912--12764947 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
12764902 ATCAAACATG
12764912 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
12764948 TTTATTTTAC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:12766268 original size:31 final size:31
Alignment explanation
Indices: 12766233--12766322 Score: 126
Period size: 31 Copynumber: 2.9 Consensus size: 31
12766223 TAATATACTC
12766233 ATACTCATACGAAATTTGAAATTTAATTCCT
1 ATACTCATACGAAATTTGAAATTTAATTCCT
* * **
12766264 ATACTCATACGAAATTTAAAATTTAGTTTTT
1 ATACTCATACGAAATTTGAAATTTAATTCCT
* *
12766295 ATACTCGTATGAAATTTGAAATTTAATT
1 ATACTCATACGAAATTTGAAATTTAATT
12766323 ATTCTAATAC
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 51 1.00
ACGTcount: A:0.39, C:0.11, G:0.08, T:0.42
Consensus pattern (31 bp):
ATACTCATACGAAATTTGAAATTTAATTCCT
Found at i:12766364 original size:20 final size:19
Alignment explanation
Indices: 12766334--12766381 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
12766324 TTCTAATACA
*
12766334 AAAAATATTTTGATTTTTTT
1 AAAAATATTTT-AGTTTTTT
* *
12766354 ATAAATTTTTTAGTTTTTT
1 AAAAATATTTTAGTTTTTT
12766373 AAAAATATT
1 AAAAATATT
12766382 AAAATTTAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
19 14 0.61
20 9 0.39
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (19 bp):
AAAAATATTTTAGTTTTTT
Found at i:12767287 original size:16 final size:14
Alignment explanation
Indices: 12767254--12767295 Score: 52
Period size: 16 Copynumber: 3.0 Consensus size: 14
12767244 GACTTTGATA
12767254 TATTAAT-TTAAAT
1 TATTAATATTAAAT
12767267 TATTAATATTATAATT
1 TATTAATATTA-AA-T
12767283 TATTAATA-TAAAT
1 TATTAATATTAAAT
12767296 GATAATAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
13 8 0.31
14 5 0.19
15 4 0.15
16 9 0.35
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (14 bp):
TATTAATATTAAAT
Found at i:12767410 original size:18 final size:18
Alignment explanation
Indices: 12767385--12767428 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
12767375 AAATATTTTT
* *
12767385 AAAA-TTTAAAATTTTAA
1 AAAATTTTAAAAATTCAA
12767402 AAAATTTTAAAAATTCAA
1 AAAATTTTAAAAATTCAA
*
12767420 AAATTTTTA
1 AAAATTTTA
12767429 TATTAGAGAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
17 4 0.17
18 19 0.83
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (18 bp):
AAAATTTTAAAAATTCAA
Found at i:12772483 original size:12 final size:12
Alignment explanation
Indices: 12772454--12772486 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
12772444 AATAATAATA
*
12772454 CTAAACAAAATT
1 CTAAAAAAAATT
12772466 -TAAAAAAAATT
1 CTAAAAAAAATT
12772477 CTAAAAAAAA
1 CTAAAAAAAA
12772487 AGAAAATAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.70, C:0.09, G:0.00, T:0.21
Consensus pattern (12 bp):
CTAAAAAAAATT
Found at i:12777440 original size:37 final size:38
Alignment explanation
Indices: 12777399--12777497 Score: 118
Period size: 37 Copynumber: 2.6 Consensus size: 38
12777389 ATAAAGTTCA
12777399 ATAAATTATCA-AATATATAAATTACTTCCAAAA-AA-AT
1 ATAAATTAT-ATAATATATAAATTACTT-CAAAATAATAT
*
12777436 ATAAATCT-TAATAATATATAAATTACTTCAAAATAATCT
1 ATAAAT-TAT-ATAATATATAAATTACTTCAAAATAATAT
12777475 ATAAATTA-ATAATATATAAATTA
1 ATAAATTATATAATATATAAATTA
12777498 TAGCCTCAAA
Statistics
Matches: 55, Mismatches: 2, Indels: 10
0.82 0.03 0.15
Matches are distributed among these distances:
37 28 0.51
38 20 0.36
39 7 0.13
ACGTcount: A:0.56, C:0.08, G:0.00, T:0.36
Consensus pattern (38 bp):
ATAAATTATATAATATATAAATTACTTCAAAATAATAT
Found at i:12777453 original size:38 final size:37
Alignment explanation
Indices: 12777410--12777497 Score: 126
Period size: 37 Copynumber: 2.4 Consensus size: 37
12777400 TAAATTATCA
12777410 AATATATAAATTACTTCCAAAA-AA-ATATAAATCTTAAT
1 AATATATAAATTACTT-CAAAATAATATATAAA--TTAAT
*
12777448 AATATATAAATTACTTCAAAATAATCTATAAATTAAT
1 AATATATAAATTACTTCAAAATAATATATAAATTAAT
12777485 AATATATAAATTA
1 AATATATAAATTA
12777498 TAGCCTCAAA
Statistics
Matches: 47, Mismatches: 1, Indels: 5
0.89 0.02 0.09
Matches are distributed among these distances:
37 23 0.49
38 18 0.38
39 6 0.13
ACGTcount: A:0.56, C:0.08, G:0.00, T:0.36
Consensus pattern (37 bp):
AATATATAAATTACTTCAAAATAATATATAAATTAAT
Found at i:12777470 original size:22 final size:22
Alignment explanation
Indices: 12777410--12777482 Score: 79
Period size: 22 Copynumber: 3.6 Consensus size: 22
12777400 TAAATTATCA
12777410 AATATATAAATTACTTCCAAAA-
1 AATATATAAATTACTT-CAAAAT
12777432 AA-ATATAAA-T-CTT---AAT
1 AATATATAAATTACTTCAAAAT
12777448 AATATATAAATTACTTCAAAAT
1 AATATATAAATTACTTCAAAAT
*
12777470 AATCTATAAATTA
1 AATATATAAATTA
12777483 ATAATATATA
Statistics
Matches: 43, Mismatches: 1, Indels: 14
0.74 0.02 0.24
Matches are distributed among these distances:
15 2 0.05
16 2 0.05
17 7 0.16
18 1 0.02
19 6 0.14
20 1 0.02
21 7 0.16
22 17 0.40
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.36
Consensus pattern (22 bp):
AATATATAAATTACTTCAAAAT
Found at i:12777485 original size:15 final size:15
Alignment explanation
Indices: 12777467--12777497 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
12777457 ATTACTTCAA
*
12777467 AATAATCTATAAATT
1 AATAATATATAAATT
12777482 AATAATATATAAATT
1 AATAATATATAAATT
12777497 A
1 A
12777498 TAGCCTCAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (15 bp):
AATAATATATAAATT
Found at i:12777920 original size:11 final size:11
Alignment explanation
Indices: 12777890--12777921 Score: 50
Period size: 10 Copynumber: 3.1 Consensus size: 11
12777880 TTGGTAACAA
12777890 AAATTTA-AAC
1 AAATTTATAAC
12777900 AAATTT-TAAC
1 AAATTTATAAC
12777910 AAATTTATAAC
1 AAATTTATAAC
12777921 A
1 A
12777922 CAAAATTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 15 0.75
11 5 0.25
ACGTcount: A:0.56, C:0.09, G:0.00, T:0.34
Consensus pattern (11 bp):
AAATTTATAAC
Done.