Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19866354
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 74000 characters in sequence are not A, C, G, or T
File 59 of 100
Found at i:13733625 original size:36 final size:36
Alignment explanation
Indices: 13733585--13733665 Score: 117
Period size: 36 Copynumber: 2.2 Consensus size: 36
13733575 ATTTGAGACT
* * * *
13733585 TTTGCGAATTTTGGAGCTTTTGTGAATTTTGGAACC
1 TTTGCGAATTTTAGAGCTTTGGCGAATCTTGGAACC
13733621 TTTGCGAATTTTAGAGCTTTGGCGAATCTTGGAACC
1 TTTGCGAATTTTAGAGCTTTGGCGAATCTTGGAACC
*
13733657 TTTACGAAT
1 TTTGCGAAT
13733666 CTTGAAAATT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 40 1.00
ACGTcount: A:0.22, C:0.14, G:0.23, T:0.41
Consensus pattern (36 bp):
TTTGCGAATTTTAGAGCTTTGGCGAATCTTGGAACC
Found at i:13733750 original size:18 final size:18
Alignment explanation
Indices: 13733729--13733763 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
13733719 AAATTCATTA
13733729 CATTGCATTCACAACATC
1 CATTGCATTCACAACATC
* *
13733747 CATTGTATTCACTACAT
1 CATTGCATTCACAACAT
13733764 GGTAGGTATG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.31, C:0.29, G:0.06, T:0.34
Consensus pattern (18 bp):
CATTGCATTCACAACATC
Found at i:13734089 original size:44 final size:44
Alignment explanation
Indices: 13734030--13734133 Score: 145
Period size: 44 Copynumber: 2.4 Consensus size: 44
13734020 AAAGGTAAGA
* * * *
13734030 ATGATCTATAAGACCTCCAAGTGTAATCTCTAAGACCTTTAGGT
1 ATGATTTATAAGACCTCCAAGTGTAATCTCCAAGACCTCTAGGC
* *
13734074 ATGATTTATAAGACCTCCAGGTGTAATTTCCAAGACCTCTAGGC
1 ATGATTTATAAGACCTCCAAGTGTAATCTCCAAGACCTCTAGGC
*
13734118 ATGATTTGTAAGACCT
1 ATGATTTATAAGACCT
13734134 TCGAGCATAA
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 53 1.00
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.32
Consensus pattern (44 bp):
ATGATTTATAAGACCTCCAAGTGTAATCTCCAAGACCTCTAGGC
Found at i:13734102 original size:22 final size:22
Alignment explanation
Indices: 13734036--13734112 Score: 73
Period size: 22 Copynumber: 3.5 Consensus size: 22
13734026 AAGAATGATC
* *
13734036 TATAAGACCTCCAAGTGTAATC
1 TATAAGACCTCCAGGTGTAATT
* ** * *
13734058 TCTAAGACCTTTAGGTATGATT
1 TATAAGACCTCCAGGTGTAATT
13734080 TATAAGACCTCCAGGTGTAATT
1 TATAAGACCTCCAGGTGTAATT
**
13734102 TCCAAGACCTC
1 TATAAGACCTC
13734113 TAGGCATGAT
Statistics
Matches: 41, Mismatches: 14, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
22 41 1.00
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (22 bp):
TATAAGACCTCCAGGTGTAATT
Found at i:13734124 original size:22 final size:22
Alignment explanation
Indices: 13734060--13734133 Score: 76
Period size: 22 Copynumber: 3.4 Consensus size: 22
13734050 GTGTAATCTC
*
13734060 TAAGACCTTTAGGTATGATTTA
1 TAAGACCTCTAGGTATGATTTA
* * * *
13734082 TAAGACCTCCAGGTGTAATTTC
1 TAAGACCTCTAGGTATGATTTA
* * *
13734104 CAAGACCTCTAGGCATGATTTG
1 TAAGACCTCTAGGTATGATTTA
13734126 TAAGACCT
1 TAAGACCT
13734134 TCGAGCATAA
Statistics
Matches: 40, Mismatches: 12, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
22 40 1.00
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32
Consensus pattern (22 bp):
TAAGACCTCTAGGTATGATTTA
Found at i:13734141 original size:22 final size:22
Alignment explanation
Indices: 13734116--13734178 Score: 56
Period size: 22 Copynumber: 2.9 Consensus size: 22
13734106 AGACCTCTAG
*
13734116 GCATGATTTGTAAGACCTTCGA
1 GCATGATTTGTAAGACCTTCAA
* * * *
13734138 GCATAATCTT-CAAGATCTCCAA
1 GCATGAT-TTGTAAGACCTTCAA
*
13734160 GCAGGATTTGTAAGACCTT
1 GCATGATTTGTAAGACCTT
13734179 AAGGCATAAT
Statistics
Matches: 29, Mismatches: 10, Indels: 4
0.67 0.23 0.09
Matches are distributed among these distances:
21 2 0.07
22 25 0.86
23 2 0.07
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (22 bp):
GCATGATTTGTAAGACCTTCAA
Found at i:13734152 original size:44 final size:45
Alignment explanation
Indices: 13734053--13734194 Score: 132
Period size: 44 Copynumber: 3.2 Consensus size: 45
13734043 CCTCCAAGTG
* * * * **
13734053 TAATC-TCTAAGACCTTTAGGTATGATTTATAAGACC-TCCAGGTG
1 TAATCTTC-AAGACCTCTAGGCATGATTTGTAAGACCTTCAAGGCA
*
13734097 TAAT-TTCCAAGACCTCTAGGCATGATTTGTAAGACCTTCGA-GCA
1 TAATCTT-CAAGACCTCTAGGCATGATTTGTAAGACCTTCAAGGCA
* * * *
13734141 TAATCTTCAAGATCTCCAAGCAGGATTTGTAAGACCTT-AAGGCA
1 TAATCTTCAAGACCTCTAGGCATGATTTGTAAGACCTTCAAGGCA
13734185 TAATCTTCAA
1 TAATCTTCAA
13734195 AACTTCCAGG
Statistics
Matches: 82, Mismatches: 11, Indels: 10
0.80 0.11 0.10
Matches are distributed among these distances:
43 1 0.01
44 75 0.91
45 6 0.07
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.31
Consensus pattern (45 bp):
TAATCTTCAAGACCTCTAGGCATGATTTGTAAGACCTTCAAGGCA
Found at i:13734770 original size:43 final size:43
Alignment explanation
Indices: 13734599--13734821 Score: 222
Period size: 43 Copynumber: 5.2 Consensus size: 43
13734589 CAGGGTATGT
* * * * *
13734599 TTTTATTTTTTC-AAAGTTCCAAAGTCTCAGTTGTAGGAGAACA
1 TTTTA-TTTTTCAAAAGTTTCAAGGCCTCAGTTGTAGGGGAGCA
* *
13734642 TTTTATTTTTC-AAAG-TTCTGAGGCCTTAGTTGTAGGGGAGCA
1 TTTTATTTTTCAAAAGTTTC-AAGGCCTCAGTTGTAGGGGAGCA
* * * * *
13734684 TTTTATATTCCAAAA-TTCCAAGGCCTCAGTTATGAAGGG-GCA
1 TTTTATTTTTCAAAAGTTTCAAGGCCTCAGTTGT-AGGGGAGCA
*
13734726 TTTTATTTTTCAAAAGTTTCAAAGCCTCAGTTGTAGGGGAGCA
1 TTTTATTTTTCAAAAGTTTCAAGGCCTCAGTTGTAGGGGAGCA
* * * * *
13734769 TTTTATTTTTCAAAAATTTCAAGGCTTCAATTGCAAGGGAGCA
1 TTTTATTTTTCAAAAGTTTCAAGGCCTCAGTTGTAGGGGAGCA
13734812 TTTTATTTTT
1 TTTTATTTTT
13734822 TTGAAAGCTT
Statistics
Matches: 148, Mismatches: 26, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
41 2 0.01
42 67 0.45
43 79 0.53
ACGTcount: A:0.28, C:0.14, G:0.19, T:0.39
Consensus pattern (43 bp):
TTTTATTTTTCAAAAGTTTCAAGGCCTCAGTTGTAGGGGAGCA
Found at i:13734770 original size:85 final size:85
Alignment explanation
Indices: 13734640--13734821 Score: 228
Period size: 85 Copynumber: 2.1 Consensus size: 85
13734630 TGTAGGAGAA
* * * *
13734640 CATTTTATTTTTCAAAGTTCTGAGGCCTTAGTTGTAGGGGAGCATTTTA-TATTCCAAAATTCCA
1 CATTTTATTTTTCAAAGTTCTAAAGCCTCAGTTGTAGGGGAGCATTTTATTATTCAAAAATTCCA
*
13734704 AGGCCTCAGTTATG-AAGGG-G
66 AGGCCTCA-AT-TGCAAGGGAG
* *
13734724 CATTTTATTTTTCAAAAGTT-TCAAAGCCTCAGTTGTAGGGGAGCATTTTATTTTTCAAAAATTT
1 CATTTTATTTTTC-AAAGTTCT-AAAGCCTCAGTTGTAGGGGAGCATTTTATTATTCAAAAATTC
*
13734788 CAAGGCTTCAATTGCAAGGGAG
64 CAAGGCCTCAATTGCAAGGGAG
13734810 CATTTTATTTTT
1 CATTTTATTTTT
13734822 TTGAAAGCTT
Statistics
Matches: 85, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
84 16 0.19
85 37 0.44
86 32 0.38
ACGTcount: A:0.27, C:0.14, G:0.19, T:0.39
Consensus pattern (85 bp):
CATTTTATTTTTCAAAGTTCTAAAGCCTCAGTTGTAGGGGAGCATTTTATTATTCAAAAATTCCA
AGGCCTCAATTGCAAGGGAG
Found at i:13735092 original size:14 final size:14
Alignment explanation
Indices: 13735075--13735121 Score: 53
Period size: 14 Copynumber: 3.5 Consensus size: 14
13735065 GCCTTAAATT
*
13735075 TTTTTGTATTTTAA
1 TTTTTGTAGTTTAA
*
13735089 TTTTTTTAGTTTAA
1 TTTTTGTAGTTTAA
*
13735103 -TTTT-TAGCTTAA
1 TTTTTGTAGTTTAA
13735115 TTTTTGT
1 TTTTTGT
13735122 TTTTTTAGTC
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
12 7 0.25
13 8 0.29
14 13 0.46
ACGTcount: A:0.19, C:0.02, G:0.09, T:0.70
Consensus pattern (14 bp):
TTTTTGTAGTTTAA
Found at i:13735094 original size:15 final size:14
Alignment explanation
Indices: 13735074--13735119 Score: 51
Period size: 12 Copynumber: 3.4 Consensus size: 14
13735064 AGCCTTAAAT
*
13735074 TTTTTTGTATTTTAA
1 TTTTTT-TAGTTTAA
13735089 TTTTTTTAGTTTAA
1 TTTTTTTAGTTTAA
*
13735103 --TTTTTAGCTTAA
1 TTTTTTTAGTTTAA
13735115 TTTTT
1 TTTTT
13735120 GTTTTTTTAG
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
12 11 0.41
14 10 0.37
15 6 0.22
ACGTcount: A:0.20, C:0.02, G:0.07, T:0.72
Consensus pattern (14 bp):
TTTTTTTAGTTTAA
Found at i:13735108 original size:12 final size:12
Alignment explanation
Indices: 13735091--13735123 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
13735081 TATTTTAATT
13735091 TTTTTAGTTTAA
1 TTTTTAGTTTAA
*
13735103 TTTTTAGCTTAA
1 TTTTTAGTTTAA
13735115 TTTTT-GTTT
1 TTTTTAGTTT
13735124 TTTTAGTCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
11 3 0.16
12 16 0.84
ACGTcount: A:0.18, C:0.03, G:0.09, T:0.70
Consensus pattern (12 bp):
TTTTTAGTTTAA
Found at i:13735764 original size:17 final size:16
Alignment explanation
Indices: 13735742--13735802 Score: 61
Period size: 16 Copynumber: 3.8 Consensus size: 16
13735732 ATTTATTTTA
13735742 ATATTATATTTGCATG
1 ATATTATATTTGCATG
* *
13735758 ATAATTA-ATTTGCTTA
1 AT-ATTATATTTGCATG
*
13735774 ATATTTTATTTGCATG
1 ATATTATATTTGCATG
*
13735790 ATTAGTATATTTG
1 A-TATTATATTTG
13735803 TGTGATTTAT
Statistics
Matches: 35, Mismatches: 7, Indels: 5
0.74 0.15 0.11
Matches are distributed among these distances:
15 3 0.09
16 19 0.54
17 13 0.37
ACGTcount: A:0.31, C:0.05, G:0.11, T:0.52
Consensus pattern (16 bp):
ATATTATATTTGCATG
Found at i:13735835 original size:20 final size:20
Alignment explanation
Indices: 13735810--13735882 Score: 83
Period size: 20 Copynumber: 3.6 Consensus size: 20
13735800 TTGTGTGATT
*
13735810 TATTAATAAATTTGCATGAC
1 TATTAATATATTTGCATGAC
* *
13735830 TATTAATATGTTTGCATGAT
1 TATTAATATATTTGCATGAC
* *
13735850 TATTAATTTATTTGCATGAT
1 TATTAATATATTTGCATGAC
* *
13735870 TATCAATTTATTT
1 TATTAATATATTT
13735883 ATTTCTATGA
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 47 1.00
ACGTcount: A:0.33, C:0.07, G:0.10, T:0.51
Consensus pattern (20 bp):
TATTAATATATTTGCATGAC
Found at i:13735961 original size:53 final size:53
Alignment explanation
Indices: 13735902--13736030 Score: 195
Period size: 53 Copynumber: 2.4 Consensus size: 53
13735892 ATTGCATGAT
13735902 TATTATTGTATATTTAATTACATGTTTATTTGCATGATTTATATTATTATTTG
1 TATTATTGTATATTTAATTACATGTTTATTTGCATGATTTATATTATTATTTG
* * **
13735955 TATTATTATACATTTAATTGTATGTTTATTTGCATGATTTATATTATTATTTG
1 TATTATTGTATATTTAATTACATGTTTATTTGCATGATTTATATTATTATTTG
* * *
13736008 CATGATTGTATATTTAACTACAT
1 TATTATTGTATATTTAATTACAT
13736031 ATTCTATGTT
Statistics
Matches: 65, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
53 65 1.00
ACGTcount: A:0.29, C:0.05, G:0.09, T:0.56
Consensus pattern (53 bp):
TATTATTGTATATTTAATTACATGTTTATTTGCATGATTTATATTATTATTTG
Found at i:13736005 original size:21 final size:22
Alignment explanation
Indices: 13735980--13736021 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 22
13735970 AATTGTATGT
13735980 TTATTTGCATGATT-TATATTA
1 TTATTTGCATGATTGTATATTA
13736001 TTATTTGCATGATTGTATATT
1 TTATTTGCATGATTGTATATT
13736022 TAACTACATA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.26, C:0.05, G:0.12, T:0.57
Consensus pattern (22 bp):
TTATTTGCATGATTGTATATTA
Found at i:13736120 original size:32 final size:35
Alignment explanation
Indices: 13736083--13736146 Score: 98
Period size: 32 Copynumber: 1.9 Consensus size: 35
13736073 TCTATATTTC
*
13736083 ATGATTATTAATTTATTT-TTT-CAT-GTGATTGT
1 ATGATTATTAATATATTTATTTGCATGGTGATTGT
13736115 ATGATTATTAATATATTTATTTGCATGGTGAT
1 ATGATTATTAATATATTTATTTGCATGGTGAT
13736147 ATATTTATAT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 17 0.61
33 3 0.11
34 3 0.11
35 5 0.18
ACGTcount: A:0.28, C:0.03, G:0.14, T:0.55
Consensus pattern (35 bp):
ATGATTATTAATATATTTATTTGCATGGTGATTGT
Found at i:13736203 original size:24 final size:23
Alignment explanation
Indices: 13736176--13736230 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 23
13736166 TGCATGGTTT
*
13736176 TATATTTATTACATGATATGATAC
1 TATATTTATTACATGAT-TAATAC
* *
13736200 TATATGTTATTGCATGATTAATAT
1 TATAT-TTATTACATGATTAATAC
13736224 TATATTT
1 TATATTT
13736231 GAATGATATT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
23 2 0.07
24 14 0.52
25 11 0.41
ACGTcount: A:0.35, C:0.05, G:0.09, T:0.51
Consensus pattern (23 bp):
TATATTTATTACATGATTAATAC
Found at i:13736357 original size:24 final size:23
Alignment explanation
Indices: 13736311--13736371 Score: 67
Period size: 24 Copynumber: 2.7 Consensus size: 23
13736301 ATTTCATGAT
13736311 TATATATTTGCATGA-ATGGTTA
1 TATATATTTGCATGATATGGTTA
*
13736333 TTAATATATTTGCATGATAT-TTTA
1 -T-ATATATTTGCATGATATGGTTA
13736357 TAT-TA-TTGCATGATA
1 TATATATTTGCATGATA
13736372 ATTAATATTT
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
20 10 0.29
21 2 0.06
22 2 0.06
23 2 0.06
24 17 0.49
25 2 0.06
ACGTcount: A:0.33, C:0.05, G:0.13, T:0.49
Consensus pattern (23 bp):
TATATATTTGCATGATATGGTTA
Found at i:13736365 original size:20 final size:20
Alignment explanation
Indices: 13736342--13736444 Score: 74
Period size: 20 Copynumber: 5.4 Consensus size: 20
13736332 ATTAATATAT
13736342 TTGCATGATATTTTATATTA
1 TTGCATGATATTTTATATTA
* * *
13736362 TTGCATGATAATTAATATTT
1 TTGCATGATATTTTATATTA
* *
13736382 TTTCATGATATTATATA-T-
1 TTGCATGATATTTTATATTA
* *
13736400 TTACATG--ATTAT-TATTA
1 TTGCATGATATTTTATATTA
* *
13736417 TTGCATGATAATTAATA-TA
1 TTGCATGATATTTTATATTA
13736436 TTTGCATGA
1 -TTGCATGA
13736445 CATTCTTGCA
Statistics
Matches: 65, Mismatches: 12, Indels: 12
0.73 0.13 0.13
Matches are distributed among these distances:
15 2 0.03
16 6 0.09
17 6 0.09
18 6 0.09
19 5 0.08
20 40 0.62
ACGTcount: A:0.34, C:0.06, G:0.10, T:0.50
Consensus pattern (20 bp):
TTGCATGATATTTTATATTA
Found at i:13736407 original size:38 final size:40
Alignment explanation
Indices: 13736332--13736418 Score: 106
Period size: 40 Copynumber: 2.2 Consensus size: 40
13736322 ATGAATGGTT
* * *
13736332 ATTAATATATTTGCATGATATTTTATATTATTGCATGATA
1 ATTAATATTTTTGCATGATATTATATATTATTACATGATA
* *
13736372 ATTAATATTTTTTCATGATATTATATA-T-TTACATGATT
1 ATTAATATTTTTGCATGATATTATATATTATTACATGATA
*
13736410 ATTATTATT
1 ATTAATATT
13736419 GCATGATAAT
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
38 16 0.39
39 1 0.02
40 24 0.59
ACGTcount: A:0.34, C:0.05, G:0.07, T:0.54
Consensus pattern (40 bp):
ATTAATATTTTTGCATGATATTATATATTATTACATGATA
Found at i:13738895 original size:11 final size:12
Alignment explanation
Indices: 13738879--13738907 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
13738869 CTCATTTATC
13738879 TTTTTCTTTT-T
1 TTTTTCTTTTCT
13738890 TTTTTCTTTTCT
1 TTTTTCTTTTCT
13738902 TTTTTC
1 TTTTTC
13738908 GTTGATAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 10 0.59
12 7 0.41
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (12 bp):
TTTTTCTTTTCT
Found at i:13739818 original size:23 final size:24
Alignment explanation
Indices: 13739792--13739836 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
13739782 CTCTTTTTTG
13739792 TTAA-AATTTTTTTAACATAAAAA
1 TTAATAATTTTTTTAACATAAAAA
* *
13739815 TTAATATTTTTTTTACCATAAA
1 TTAATAATTTTTTTAACATAAA
13739837 CAAAAATATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 4 0.21
24 15 0.79
ACGTcount: A:0.44, C:0.07, G:0.00, T:0.49
Consensus pattern (24 bp):
TTAATAATTTTTTTAACATAAAAA
Found at i:13739844 original size:24 final size:24
Alignment explanation
Indices: 13739798--13739845 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
13739788 TTTGTTAAAA
*
13739798 TTTTTTTAACATAAAAATTAATAT
1 TTTTTTTAACATAAAAATAAATAT
*
13739822 TTTTTTTACCATAAACAA-AAATAT
1 TTTTTTTAACATAAA-AATAAATAT
13739846 ATGTTAAACT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 19 0.90
25 2 0.10
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (24 bp):
TTTTTTTAACATAAAAATAAATAT
Found at i:13740025 original size:16 final size:15
Alignment explanation
Indices: 13739999--13740029 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
13739989 AATATACAAA
13739999 AAATAAAAATTATTT
1 AAATAAAAATTATTT
13740014 AAATAAATAATTATTT
1 AAATAAA-AATTATTT
13740030 TCTAATATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (15 bp):
AAATAAAAATTATTT
Found at i:13740431 original size:19 final size:17
Alignment explanation
Indices: 13740418--13740474 Score: 56
Period size: 17 Copynumber: 3.8 Consensus size: 17
13740408 ATTAAATATG
*
13740418 ATATATATTTTTAACTT
1 ATATATATTTTTAAATT
13740435 ATATATATTTTT--ATT
1 ATATATATTTTTAAATT
13740450 A-A-A-A-TTTTAAATT
1 ATATATATTTTTAAATT
13740463 ATAT-TATTTTTA
1 ATATATATTTTTA
13740475 TTTTTTTATA
Statistics
Matches: 33, Mismatches: 1, Indels: 13
0.70 0.02 0.28
Matches are distributed among these distances:
11 4 0.12
12 1 0.03
13 5 0.15
14 2 0.06
15 4 0.12
16 5 0.15
17 12 0.36
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.60
Consensus pattern (17 bp):
ATATATATTTTTAAATT
Found at i:13740450 original size:47 final size:45
Alignment explanation
Indices: 13740385--13740474 Score: 110
Period size: 47 Copynumber: 2.0 Consensus size: 45
13740375 ATAAAAATTA
*
13740385 TTATATAAAATTTGTATTAATATATTAAATATGATATATATTTTTAAC
1 TTATATAAAATTTGTATTAAAATATTAAAT-T-ATAT-TATTTTTAAC
* * *
13740433 TTATAT-ATATTTTTATTAAAATTTTAAATTATATTATTTTTA
1 TTATATAAAATTTGTATTAAAATATTAAATTATATTATTTTTA
13740475 TTTTTTTATA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
44 8 0.21
45 4 0.11
46 1 0.03
47 19 0.50
48 6 0.16
ACGTcount: A:0.41, C:0.01, G:0.02, T:0.56
Consensus pattern (45 bp):
TTATATAAAATTTGTATTAAAATATTAAATTATATTATTTTTAAC
Found at i:13740605 original size:2 final size:2
Alignment explanation
Indices: 13740600--13740625 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
13740590 TGAGAAAAAA
13740600 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
13740626 GCATTTCCGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:13750573 original size:20 final size:20
Alignment explanation
Indices: 13750548--13750586 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
13750538 GTATGATGTA
* *
13750548 TTTTATGAATGTTATGGATG
1 TTTTATAAATGTTAGGGATG
13750568 TTTTATAAATGTTAGGGAT
1 TTTTATAAATGTTAGGGAT
13750587 AATTTGGATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.28, C:0.00, G:0.23, T:0.49
Consensus pattern (20 bp):
TTTTATAAATGTTAGGGATG
Found at i:13750882 original size:21 final size:22
Alignment explanation
Indices: 13750852--13750898 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 22
13750842 TTTAGTGATC
* *
13750852 GATTATCAATCAATTA-CCATG
1 GATTACCAATCAATTATCAATG
*
13750873 GATTACCAATGAATTATCAATG
1 GATTACCAATCAATTATCAATG
13750895 GATT
1 GATT
13750899 TTATCGAGAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 14 0.64
22 8 0.36
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.34
Consensus pattern (22 bp):
GATTACCAATCAATTATCAATG
Found at i:13753870 original size:45 final size:45
Alignment explanation
Indices: 13753814--13753903 Score: 144
Period size: 45 Copynumber: 2.0 Consensus size: 45
13753804 ATTTGACAAG
* * *
13753814 TTATTTTTAGTATGGGTAACAACTTTATACTTAATAATTCTTCTA
1 TTATTTCTAGTATGAGTAACAACTTTATACGTAATAATTCTTCTA
*
13753859 TTATTTCTAGTATGAGTAACAACTTTATAGGTAATAATTCTTCTA
1 TTATTTCTAGTATGAGTAACAACTTTATACGTAATAATTCTTCTA
13753904 CATTTGCATT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.32, C:0.11, G:0.10, T:0.47
Consensus pattern (45 bp):
TTATTTCTAGTATGAGTAACAACTTTATACGTAATAATTCTTCTA
Found at i:13755402 original size:22 final size:22
Alignment explanation
Indices: 13755355--13755404 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
13755345 ATCTTTGATT
*
13755355 TTTTTAGTTAATTTATCTATTT
1 TTTTTAGTTAATTTATCTATTG
13755377 TTTTTA-TTGAATTTATC-ATTAG
1 TTTTTAGTT-AATTTATCTATT-G
13755399 TTTTTA
1 TTTTTA
13755405 ACATATTTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
21 5 0.20
22 20 0.80
ACGTcount: A:0.24, C:0.04, G:0.06, T:0.66
Consensus pattern (22 bp):
TTTTTAGTTAATTTATCTATTG
Found at i:13756208 original size:59 final size:59
Alignment explanation
Indices: 13756097--13756328 Score: 224
Period size: 59 Copynumber: 3.9 Consensus size: 59
13756087 AAATTTGGAA
* * * * *
13756097 AAAAATATTGTTTTGAAGG-AAAGTTGAATGTATCAATTTCCTTTGAACATAAAAATTAA-
1 AAAAATA-T-TTTTAAAGGAAAAGTTGAAAGTATCAATTTTCTTTAAAAATAAAAATTAAG
* * *
13756156 AAAATATATTTTTAAAGAAAAAGTTGAAAATATCAATTTTTTTTAAAAAT-AAAATTATCAG
1 AAAA-ATATTTTTAAAGGAAAAGTTGAAAGTATCAATTTTCTTTAAAAATAAAAATTA--AG
* * * * * *
13756217 AAAAAGCATTTCTT--GGGAAAAGTTGGAAGTACCAATTTTC-TCAAAAATAAAACTTGAAG
1 AAAAA-TATTT-TTAAAGGAAAAGTTGAAAGTATCAATTTTCTTTAAAAATAAAAATT-AAG
13756276 AAAAATATTTTTAAAGGAAAAGTTGAAAGTATCAATTTTCTTTAAAAATAAAA
1 AAAAATATTTTTAAAGGAAAAGTTGAAAGTATCAATTTTCTTTAAAAATAAAA
13756329 TTTCTAAAAT
Statistics
Matches: 139, Mismatches: 22, Indels: 23
0.76 0.12 0.12
Matches are distributed among these distances:
57 2 0.01
58 18 0.13
59 67 0.48
60 41 0.29
61 9 0.06
62 2 0.01
ACGTcount: A:0.48, C:0.06, G:0.12, T:0.34
Consensus pattern (59 bp):
AAAAATATTTTTAAAGGAAAAGTTGAAAGTATCAATTTTCTTTAAAAATAAAAATTAAG
Found at i:13756253 original size:60 final size:58
Alignment explanation
Indices: 13756107--13756519 Score: 187
Period size: 59 Copynumber: 6.8 Consensus size: 58
13756097 AAAAATATTG
* * ** * * *
13756107 TTTTGAAGG-AAAGTTGAATGTATCAATTTCCTTTGAACATAAAAATT-AA-AAAATATA
1 TTTTTAAGGAAAAGTTGAAAGTATCAATTTTTTTTAAAAAT-AAAATTGAAGAAAA-ACA
* *
13756164 TTTTTAAAGAAAAAGTTGAAAATATCAATTTTTTTTAAAAATAAAATT-ATCAGAAAAAGCA
1 TTTTT-AAGGAAAAGTTGAAAGTATCAATTTTTTTTAAAAATAAAATTGA--AGAAAAA-CA
* * * * * *
13756225 TTTCTT-GGGAAAAGTTGGAAGTACCAA-TTTTCTCAAAAATAAAACTTGAAGAAAAATA
1 TTT-TTAAGGAAAAGTTGAAAGTATCAATTTTTTTTAAAAATAAAA-TTGAAGAAAAACA
* * *
13756283 TTTTTAAAGGAAAAGTTGAAAGTATCAATTTTCTTTAAAAATAAAATTTCTAAAATAAAAATTTC
1 TTTTT-AAGGAAAAGTTGAAAGTATCAATTTTTTTTAAAAATAAAA--T-T-GAAGAAAAA----
13756348 CAAAA
57 C---A
* * * * * * * *
13756353 GCATTTTGAGAAAAAGTTGAAAATATCAATTTTTCTTGAAATTAAAATTTTATA-AAAAAGCA
1 --TTTTTAAGGAAAAGTTGAAAGTATCAATTTTTTTTAAAAATAAAA-TTGA-AGAAAAA-CA
* * * *
13756415 -TTTTGAGGAAAAGTTGAAAGTACCAATTTTTCTTAAAAAATAAAAATTATCAAGAAAAACA
1 TTTTTAAGGAAAAGTTGAAAGTATCAATTTTT-TTTAAAAAT-AAAA-T-TGAAGAAAAACA
* * * * *
13756476 TTTTTTAGAAAAAATTGAAAGTATCAATTCTTCTT-AAAATAAAA
1 TTTTTAAGGAAAAGTTGAAAGTATCAATTTTTTTTAAAAATAAAA
13756520 ATCTCCAAAT
Statistics
Matches: 274, Mismatches: 52, Indels: 58
0.71 0.14 0.15
Matches are distributed among these distances:
57 6 0.02
58 14 0.05
59 97 0.35
60 44 0.16
61 20 0.07
62 37 0.14
63 7 0.03
65 1 0.00
68 6 0.02
69 2 0.01
70 3 0.01
71 33 0.12
72 4 0.01
ACGTcount: A:0.48, C:0.07, G:0.10, T:0.34
Consensus pattern (58 bp):
TTTTTAAGGAAAAGTTGAAAGTATCAATTTTTTTTAAAAATAAAATTGAAGAAAAACA
Found at i:13756339 original size:14 final size:15
Alignment explanation
Indices: 13756320--13756352 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
13756310 ATTTTCTTTA
*
13756320 AAAAT-AAAATTTCT
1 AAAATAAAAATTTCC
13756334 AAAATAAAAATTTCC
1 AAAATAAAAATTTCC
13756349 AAAA
1 AAAA
13756353 GCATTTTGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 5 0.29
15 12 0.71
ACGTcount: A:0.64, C:0.09, G:0.00, T:0.27
Consensus pattern (15 bp):
AAAATAAAAATTTCC
Found at i:13756415 original size:59 final size:61
Alignment explanation
Indices: 13756349--13756521 Score: 208
Period size: 59 Copynumber: 2.9 Consensus size: 61
13756339 AAAAATTTCC
* * *
13756349 AAAAGCATTTTGAGAAAAAGTTGAAAATATCAATTTTTCTTGAAATTAAAATTTTAT-AA-
1 AAAAGCATTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTAAAATTAAAATATTATCAAG
* * *
13756408 AAAAGCATTTTGAGGAAAAGTTGAAAGTACCAATTTTTCTTAAAAAATAAAA-ATTATCAAG
1 AAAAGCATTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTT-AAAATTAAAATATTATCAAG
* * * * *
13756469 AAAAACATTTTTTAGAAAAAATTGAAAGTATCAATTCTTCTTAAAATAAAAAT
1 AAAAGCA-TTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTAAAATTAAAAT
13756522 CTCCAAATGC
Statistics
Matches: 95, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
59 42 0.44
60 10 0.11
61 14 0.15
62 29 0.31
ACGTcount: A:0.50, C:0.07, G:0.10, T:0.34
Consensus pattern (61 bp):
AAAAGCATTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTAAAATTAAAATATTATCAAG
Found at i:13760056 original size:62 final size:59
Alignment explanation
Indices: 13759923--13760113 Score: 267
Period size: 59 Copynumber: 3.2 Consensus size: 59
13759913 TTTTGTGTAG
* **
13759923 GGAAGATTGATACTTTCAACTTTT-CTCAAAAAATATTTTTTTTTGAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTC-AAAAATCCTTTTTTTTGAAATTTATTTTTAA
* *
13759982 GGAAAATTGATACTTTTAACTTTTCCTCAAAAATCCTTTTTCGTTTGAAAATTCATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCTTTTT--TTTG-AAATTTATTTTTAA
* * *
13760044 GGAAAATTGATACTTTCAACTTTTCCTTAAAAACCCTTTTTTTAGAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCTTTTTTTTGAAATTTATTTTTAA
13760103 GGAAAATTGAT
1 GGAAAATTGAT
13760114 TCCCTAAAAA
Statistics
Matches: 118, Mismatches: 10, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
59 57 0.48
60 6 0.05
61 4 0.03
62 51 0.43
ACGTcount: A:0.34, C:0.12, G:0.09, T:0.46
Consensus pattern (59 bp):
GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCTTTTTTTTGAAATTTATTTTTAA
Found at i:13760157 original size:105 final size:105
Alignment explanation
Indices: 13760025--13760218 Score: 302
Period size: 105 Copynumber: 1.8 Consensus size: 105
13760015 TCCTTTTTCG
* **
13760025 TTTGAAAATTCATTTTTAAGGAAAATTGATACTTTCAACTTTTCCTTAAAAACCCTTTTTTT-AG
1 TTTGAAAATTCATTTTTAAGAAAAATTGATACTTTCAACTTTTCCCCAAAAA-CCTTTTTTTGA-
13760089 AAATTTA-TTTTTAAGGAAAATTGATTCCCTAAAAATGTTTT
64 AAATTTATTTTTTAAGGAAAATTGATTCCCTAAAAATGTTTT
* **
13760130 TTTGAAAATTTATTTTTAAGAAAAATTGATACTTTCAACTTTTCCCCAAAAATGTTTTTTTGAAA
1 TTTGAAAATTCATTTTTAAGAAAAATTGATACTTTCAACTTTTCCCCAAAAACCTTTTTTTGAAA
13760195 ATTTATTTTTTAAGGAAAATTGAT
66 ATTTATTTTTTAAGGAAAATTGAT
13760219 ACTTTCAACT
Statistics
Matches: 81, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
104 14 0.17
105 67 0.83
ACGTcount: A:0.36, C:0.10, G:0.09, T:0.45
Consensus pattern (105 bp):
TTTGAAAATTCATTTTTAAGAAAAATTGATACTTTCAACTTTTCCCCAAAAACCTTTTTTTGAAA
ATTTATTTTTTAAGGAAAATTGATTCCCTAAAAATGTTTT
Found at i:13760181 original size:58 final size:59
Alignment explanation
Indices: 13760113--13760258 Score: 231
Period size: 59 Copynumber: 2.5 Consensus size: 59
13760103 GGAAAATTGA
13760113 TTCCCTAAAAATGTTTTTTTGAAAATTTA-TTTTTAAGAAAAATTGATACTTTCAACTT
1 TTCCCTAAAAATGTTTTTTTGAAAATTTATTTTTTAAGAAAAATTGATACTTTCAACTT
* *
13760171 TTCCCCAAAAATGTTTTTTTGAAAATTTATTTTTTAAGGAAAATTGATACTTTCAACTT
1 TTCCCTAAAAATGTTTTTTTGAAAATTTATTTTTTAAGAAAAATTGATACTTTCAACTT
* * *
13760230 TTCCTTAAAAATATTTTTTTTGGAAATTT
1 TTCCCTAAAAAT-GTTTTTTTGAAAATTT
13760259 TGGTTTTTAT
Statistics
Matches: 80, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
58 28 0.35
59 38 0.47
60 14 0.17
ACGTcount: A:0.34, C:0.10, G:0.08, T:0.48
Consensus pattern (59 bp):
TTCCCTAAAAATGTTTTTTTGAAAATTTATTTTTTAAGAAAAATTGATACTTTCAACTT
Found at i:13760294 original size:14 final size:14
Alignment explanation
Indices: 13760275--13760332 Score: 57
Period size: 14 Copynumber: 4.2 Consensus size: 14
13760265 TTATTTAAAG
*
13760275 AAAATAGAATAATA
1 AAAATAGAAAAATA
13760289 AAAATAGAAAAATA
1 AAAATAGAAAAATA
* * *
13760303 AAGAAAAGTAAAACA
1 AA-AATAGAAAAATA
13760318 AAAAT--AAAAATA
1 AAAATAGAAAAATA
13760330 AAA
1 AAA
13760333 TTAAGATAAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
12 8 0.22
14 17 0.47
15 11 0.31
ACGTcount: A:0.78, C:0.02, G:0.07, T:0.14
Consensus pattern (14 bp):
AAAATAGAAAAATA
Found at i:13760302 original size:17 final size:17
Alignment explanation
Indices: 13760282--13760332 Score: 52
Period size: 17 Copynumber: 2.9 Consensus size: 17
13760272 AAGAAAATAG
13760282 AATAATAAAAATAGAAA-
1 AATAATAAAAATA-AAAC
13760299 AATAA-AGAAAAGTAAAAC
1 AATAATA-AAAA-TAAAAC
*
13760317 AAAAATAAAAATAAAA
1 AATAATAAAAATAAAA
13760333 TTAAGATAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
16 1 0.03
17 17 0.59
18 10 0.34
19 1 0.03
ACGTcount: A:0.78, C:0.02, G:0.06, T:0.14
Consensus pattern (17 bp):
AATAATAAAAATAAAAC
Found at i:13760341 original size:17 final size:16
Alignment explanation
Indices: 13760319--13760357 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
13760309 AGTAAAACAA
*
13760319 AAATAAAAATAAAATT
1 AAATAAAAAGAAAATT
*
13760335 AAGATAAAAAGAATATT
1 AA-ATAAAAAGAAAATT
13760352 AAATAA
1 AAATAA
13760358 TCCTAATCTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 6 0.30
17 14 0.70
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (16 bp):
AAATAAAAAGAAAATT
Found at i:13761258 original size:25 final size:23
Alignment explanation
Indices: 13761230--13761290 Score: 59
Period size: 26 Copynumber: 2.5 Consensus size: 23
13761220 TAATAATCGG
13761230 ATAAATAAAAAAATCAGATAAATGA
1 ATAAATAAAAAAA-CAGAT-AATGA
* *
13761255 ATAAAATAAAATTAACAGATAATTA
1 AT-AAATAAAA-AAACAGATAATGA
*
13761280 AAAAATAAAAA
1 ATAAATAAAAA
13761291 TAAAATAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
24 8 0.27
25 7 0.23
26 13 0.43
27 2 0.07
ACGTcount: A:0.70, C:0.03, G:0.05, T:0.21
Consensus pattern (23 bp):
ATAAATAAAAAAACAGATAATGA
Found at i:13761351 original size:14 final size:16
Alignment explanation
Indices: 13761332--13761382 Score: 56
Period size: 15 Copynumber: 3.4 Consensus size: 16
13761322 AAAAATTACA
13761332 ATATAA-TA-ATAAAT
1 ATATAACTATATAAAT
13761346 ATATAACTATATAAAT
1 ATATAACTATATAAAT
* *
13761362 AAATTAC-ATATAAAT
1 ATATAACTATATAAAT
13761377 AT-TAAC
1 ATATAAC
13761383 AGAAAGAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
14 9 0.29
15 11 0.35
16 11 0.35
ACGTcount: A:0.59, C:0.06, G:0.00, T:0.35
Consensus pattern (16 bp):
ATATAACTATATAAAT
Found at i:13761741 original size:41 final size:41
Alignment explanation
Indices: 13761683--13762018 Score: 480
Period size: 41 Copynumber: 8.1 Consensus size: 41
13761673 TTTGACCAAA
* * *
13761683 GCTCCTTTAAACAGAGGCTCAACGACTTTGGAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATT
*
13761724 ACTCCTCTAAACAGAGGCACCACGACTTTGGAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGG-AAAATAAATT
13761766 GCTCCTCTAAACAGAGGCACCACGACTTT-GAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAA-TAAATT
* *
13761807 GCTCCTCTAAATAGAGGCACCACGACTTT-AAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAA-TAAATT
* *
13761848 GCTCCTCTAAACAGAGGCACCATGACTTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGAC-TTTGGAAAATAAATT
*
13761890 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATT
* * *
13761931 GTTCCTGTAAACAGAGGCACCACGACTTT-GAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATT
* *
13761971 GCTCCTATAAACAGAGGCACCACGACTTTGAGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTG-GAAAATAAATT
13762013 GCTCCT
1 GCTCCT
13762019 TGACAATCAT
Statistics
Matches: 269, Mismatches: 20, Indels: 11
0.90 0.07 0.04
Matches are distributed among these distances:
40 40 0.15
41 137 0.51
42 89 0.33
43 3 0.01
ACGTcount: A:0.37, C:0.23, G:0.17, T:0.24
Consensus pattern (41 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATT
Found at i:13761823 original size:83 final size:82
Alignment explanation
Indices: 13761683--13762018 Score: 507
Period size: 83 Copynumber: 4.1 Consensus size: 82
13761673 TTTGACCAAA
* * * *
13761683 GCTCCTTTAAACAGAGGCTCAACGACTTTGGAAAA-TAAATTACTCCTCTAAACAGAGGCACCAC
1 GCTCCTCTAAACAGAGGCACCACGACTTT-GAAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
13761747 GACTTTGGAAAAATAAATT
65 GACTTT-GAAAAATAAATT
*
13761766 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTAAATAGAGGCACCACG
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACG
13761831 ACTTT-AAAAAGTAAATT
66 ACTTTGAAAAA-TAAATT
* *
13761848 GCTCCTCTAAACAGAGGCACCATGACTTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
1 GCTCCTCTAAACAGAGGCACCACGAC-TTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
13761913 GACTTTGAAAAATAAATT
65 GACTTTGAAAAATAAATT
* * *
13761931 GTTCCTGTAAACAGAGGCACCACGACTTTG-AAAGTAAATTGCTCCTATAAACAGAGGCACCACG
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACG
*
13761995 ACTTTGAGAAAGTAAATT
66 ACTTTGA-AAAATAAATT
13762013 GCTCCT
1 GCTCCT
13762019 TGACAATCAT
Statistics
Matches: 234, Mismatches: 14, Indels: 11
0.90 0.05 0.04
Matches are distributed among these distances:
81 45 0.19
82 54 0.23
83 130 0.56
84 5 0.02
ACGTcount: A:0.37, C:0.23, G:0.17, T:0.24
Consensus pattern (82 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACG
ACTTTGAAAAATAAATT
Found at i:13761903 original size:124 final size:122
Alignment explanation
Indices: 13761683--13762018 Score: 503
Period size: 124 Copynumber: 2.7 Consensus size: 122
13761673 TTTGACCAAA
* * * *
13761683 GCTCCTTTAAACAGAGGCTCAACGACTTTGGAAAA-TAAATTACTCCTCTAAACAGAGGCACCAC
1 GCTCCTCTAAACAGAGGCACCACGACTTT--AAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
* *
13761747 GACTTTGGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATT
64 GACTTTGG-AAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATT
* *
13761807 GCTCCTCTAAATAGAGGCACCACGACTTTAAAAAGTAAATTGCTCCTCTAAACAGAGGCACCATG
1 GCTCCTCTAAACAGAGGCACCACGACTTT-AAAAGTAAATTGCTCCTCTAAACAGAGGCACCACG
13761872 ACTTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATT
65 AC-TTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATT
* * * *
13761931 GTTCCTGTAAACAGAGGCACCACGACTTTGAAAGTAAATTGCTCCTATAAACAGAGGCACCACGA
1 GCTCCTCTAAACAGAGGCACCACGACTTTAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGA
13761996 CTTTGAGAAAGTAAATTGCTCCT
66 CTTTG-GAAAGTAAATTGCTCCT
13762019 TGACAATCAT
Statistics
Matches: 194, Mismatches: 15, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
122 4 0.02
123 55 0.28
124 130 0.67
125 5 0.03
ACGTcount: A:0.37, C:0.23, G:0.17, T:0.24
Consensus pattern (122 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGA
CTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAATT
Found at i:13763258 original size:8 final size:7
Alignment explanation
Indices: 13763245--13763299 Score: 53
Period size: 6 Copynumber: 8.0 Consensus size: 7
13763235 TTGAATCTCT
13763245 TTTTTTC
1 TTTTTTC
13763252 ATTTTTTC
1 -TTTTTTC
*
13763260 ATTTCTT-
1 -TTTTTTC
13763267 TTTTTTC
1 TTTTTTC
13763274 TTTTTTC
1 TTTTTTC
13763281 TTTTTT-
1 TTTTTTC
*
13763287 TTTCTT-
1 TTTTTTC
13763293 TTTTTTC
1 TTTTTTC
13763300 ATCATATTTT
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
6 15 0.37
7 13 0.32
8 13 0.32
ACGTcount: A:0.04, C:0.13, G:0.00, T:0.84
Consensus pattern (7 bp):
TTTTTTC
Found at i:13763268 original size:21 final size:21
Alignment explanation
Indices: 13763244--13763326 Score: 70
Period size: 22 Copynumber: 4.1 Consensus size: 21
13763234 TTTGAATCTC
*
13763244 TTTTTTTCATTTTTTCATTTCT
1 TTTTTTTCATTTTTTCA-TTCA
13763266 TTTTTTTC-TTTTTTC-TT--
1 TTTTTTTCATTTTTTCATTCA
*
13763283 TTTTTTTCTTTTTTTTCA-TCA
1 TTTTTTTC-ATTTTTTCATTCA
*
13763304 TATTTTTTCA-TTTTTCATCCA
1 T-TTTTTTCATTTTTTCATTCA
13763325 TT
1 TT
13763327 GTTGATATCT
Statistics
Matches: 52, Mismatches: 2, Indels: 16
0.74 0.03 0.23
Matches are distributed among these distances:
17 8 0.15
19 10 0.19
20 8 0.15
21 11 0.21
22 15 0.29
ACGTcount: A:0.10, C:0.14, G:0.00, T:0.76
Consensus pattern (21 bp):
TTTTTTTCATTTTTTCATTCA
Found at i:13763278 original size:10 final size:10
Alignment explanation
Indices: 13763253--13763298 Score: 58
Period size: 10 Copynumber: 4.5 Consensus size: 10
13763243 CTTTTTTTCA
13763253 TTTTTTCATTT
1 TTTTTTC-TTT
*
13763264 CTTTTTT-TTC
1 -TTTTTTCTTT
13763274 TTTTTTCTTT
1 TTTTTTCTTT
13763284 TTTTTTCTTT
1 TTTTTTCTTT
13763294 TTTTT
1 TTTTT
13763299 CATCATATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
9 6 0.19
10 19 0.61
12 6 0.19
ACGTcount: A:0.02, C:0.11, G:0.00, T:0.87
Consensus pattern (10 bp):
TTTTTTCTTT
Found at i:13763280 original size:16 final size:17
Alignment explanation
Indices: 13763261--13763296 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
13763251 CATTTTTTCA
13763261 TTTC-TTTTTTTTCTTT
1 TTTCTTTTTTTTTCTTT
13763277 TTTCTTTTTTTTTCTTT
1 TTTCTTTTTTTTTCTTT
13763294 TTT
1 TTT
13763297 TTCATCATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 4 0.21
17 15 0.79
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (17 bp):
TTTCTTTTTTTTTCTTT
Found at i:13764176 original size:24 final size:26
Alignment explanation
Indices: 13764140--13764188 Score: 68
Period size: 23 Copynumber: 2.0 Consensus size: 26
13764130 ACAAGTGAAG
13764140 TCACATCGTAAAAAGAAATCC-AACAA
1 TCACATCGT-AAAAGAAATCCTAACAA
13764166 TCAC-TCG-AAAAGAAATCCTAACA
1 TCACATCGTAAAAGAAATCCTAACA
13764189 TGACAAGAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
23 11 0.50
24 4 0.18
25 3 0.14
26 4 0.18
ACGTcount: A:0.51, C:0.24, G:0.08, T:0.16
Consensus pattern (26 bp):
TCACATCGTAAAAGAAATCCTAACAA
Found at i:13764198 original size:23 final size:23
Alignment explanation
Indices: 13764150--13764198 Score: 55
Period size: 23 Copynumber: 2.1 Consensus size: 23
13764140 TCACATCGTA
**
13764150 AAAAGAAATCCAACAATCACTCG
1 AAAAGAAATCCAACAATCACAAG
*
13764173 AAAAGAAATCCTAAC-ATGACAAG
1 AAAAGAAATCC-AACAATCACAAG
13764196 AAA
1 AAA
13764199 CCTTCAACTA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
23 19 0.86
24 3 0.14
ACGTcount: A:0.57, C:0.20, G:0.10, T:0.12
Consensus pattern (23 bp):
AAAAGAAATCCAACAATCACAAG
Found at i:13767255 original size:59 final size:58
Alignment explanation
Indices: 13767138--13767367 Score: 338
Period size: 59 Copynumber: 3.9 Consensus size: 58
13767128 TGTAGGGAAG
* *
13767138 ATTGATACTTTCAACTTTTCC-CAAAAATGTTTTTTTAAAAATTTATTTTTAAGAAAA
1 ATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAAAATTTATTTTTAAGAAAA
*
13767195 ATTGATACTTTCAACTTTTCCTCAAAAACCT-TTTTTTTGAAAATTTATTTTTAAGGAAA
1 ATTGATACTTTCAACTTTTCCTCAAAAA--TATTTTTTTGAAAATTTATTTTTAAGAAAA
*
13767254 ATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAATTTATTTTTTAAGAAAA
1 ATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAAAATTTA-TTTTTAAGAAAA
* *
13767313 ATTGATACTTTCAACTTTTCCTTAAAAATATTTTTTTTGGAAATTTTGATTTTTA
1 ATTGATACTTTCAACTTTTCCTCAAAAATA-TTTTTTT-GAAAATTT-ATTTTTA
13767368 TTTAAAGAAA
Statistics
Matches: 158, Mismatches: 7, Indels: 12
0.89 0.04 0.07
Matches are distributed among these distances:
57 22 0.14
58 22 0.14
59 92 0.58
60 8 0.05
61 13 0.08
62 1 0.01
ACGTcount: A:0.35, C:0.11, G:0.06, T:0.48
Consensus pattern (58 bp):
ATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAAAATTTATTTTTAAGAAAA
Found at i:13767347 original size:118 final size:118
Alignment explanation
Indices: 13767133--13767367 Score: 375
Period size: 118 Copynumber: 2.0 Consensus size: 118
13767123 TTTTATGTAG
* *
13767133 GGAAGATTGATACTTTCAACTTTTCCCAAAAATGTTTTTTTAAAAATTTATTTTTAAGAAAAATT
1 GGAAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTTAAAAATTTATTTTTAAGAAAAATT
*
13767198 GATACTTTCAACTTTTCCTCAAAAACCTTTTTTTT-GAAAATTT-ATTTTTAA
66 GATACTTTCAACTTTTCCTCAAAAACATTTTTTTTGGAAAATTTGATTTTTAA
*
13767249 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAATTTATTTTTTAAGAAAAA
1 GGAAAATTGATACTTTCAACTTTT-CCCAAAAATATTTTTTTAAAAATTTA-TTTTTAAGAAAAA
* * *
13767314 TTGATACTTTCAACTTTTCCTTAAAAATATTTTTTTTGGAAATTTTGATTTTTA
64 TTGATACTTTCAACTTTTCCTCAAAAACATTTTTTTTGGAAAATTTGATTTTTA
13767368 TTTAAAGAAA
Statistics
Matches: 108, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
116 23 0.21
117 24 0.22
118 47 0.44
119 7 0.06
120 7 0.06
ACGTcount: A:0.35, C:0.11, G:0.07, T:0.47
Consensus pattern (118 bp):
GGAAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTTAAAAATTTATTTTTAAGAAAAATT
GATACTTTCAACTTTTCCTCAAAAACATTTTTTTTGGAAAATTTGATTTTTAA
Found at i:13767394 original size:14 final size:14
Alignment explanation
Indices: 13767375--13767432 Score: 57
Period size: 14 Copynumber: 4.2 Consensus size: 14
13767365 TTATTTAAAG
*
13767375 AAAATAGAATAATA
1 AAAATAGAAAAATA
13767389 AAAATAGAAAAATA
1 AAAATAGAAAAATA
* * *
13767403 AAGAAAAGTAAAACA
1 AA-AATAGAAAAATA
13767418 AAAAT--AAAAATA
1 AAAATAGAAAAATA
13767430 AAA
1 AAA
13767433 TTAAGATAAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
12 8 0.22
14 17 0.47
15 11 0.31
ACGTcount: A:0.78, C:0.02, G:0.07, T:0.14
Consensus pattern (14 bp):
AAAATAGAAAAATA
Found at i:13767402 original size:17 final size:17
Alignment explanation
Indices: 13767382--13767432 Score: 52
Period size: 17 Copynumber: 2.9 Consensus size: 17
13767372 AAGAAAATAG
13767382 AATAATAAAAATAGAAA-
1 AATAATAAAAATA-AAAC
13767399 AATAA-AGAAAAGTAAAAC
1 AATAATA-AAAA-TAAAAC
*
13767417 AAAAATAAAAATAAAA
1 AATAATAAAAATAAAA
13767433 TTAAGATAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
16 1 0.03
17 17 0.59
18 10 0.34
19 1 0.03
ACGTcount: A:0.78, C:0.02, G:0.06, T:0.14
Consensus pattern (17 bp):
AATAATAAAAATAAAAC
Found at i:13767451 original size:16 final size:16
Alignment explanation
Indices: 13767419--13767456 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
13767409 AGTAAAACAA
13767419 AAATAAAAATAAAATT
1 AAATAAAAATAAAATT
*
13767435 AAGATAAAAA-AATATT
1 AA-ATAAAAATAAAATT
13767451 AAATAA
1 AAATAA
13767457 TCTTAATCTA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
15 4 0.20
16 9 0.45
17 7 0.35
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.24
Consensus pattern (16 bp):
AAATAAAAATAAAATT
Found at i:13767872 original size:20 final size:20
Alignment explanation
Indices: 13767836--13767874 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
13767826 TTCATCGGAT
*
13767836 TCTGGAAAATGTGGTCGAAA
1 TCTGGAAAATGTCGTCGAAA
13767856 TCTGGAAAA-GTTCGTCGAA
1 TCTGGAAAATG-TCGTCGAA
13767875 GTTGGTCGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 1 0.06
20 16 0.94
ACGTcount: A:0.33, C:0.13, G:0.28, T:0.26
Consensus pattern (20 bp):
TCTGGAAAATGTCGTCGAAA
Found at i:13768439 original size:14 final size:16
Alignment explanation
Indices: 13768422--13768472 Score: 56
Period size: 15 Copynumber: 3.4 Consensus size: 16
13768412 ATAAATTATA
13768422 ATATAA-TA-ATAAAT
1 ATATAACTATATAAAT
13768436 ATATAACTATATAAAT
1 ATATAACTATATAAAT
* *
13768452 AAATTAC-ATATAAAT
1 ATATAACTATATAAAT
13768467 AT-TAAC
1 ATATAAC
13768473 AGAAAGAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
14 9 0.29
15 11 0.35
16 11 0.35
ACGTcount: A:0.59, C:0.06, G:0.00, T:0.35
Consensus pattern (16 bp):
ATATAACTATATAAAT
Found at i:13769195 original size:19 final size:18
Alignment explanation
Indices: 13769167--13769205 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 18
13769157 TAAACATAAT
*
13769167 TTTATTATTTTATAATTA
1 TTTATTATTTTATAAATA
13769185 TTTATTAATTTTATAAATA
1 TTTATT-ATTTTATAAATA
13769204 TT
1 TT
13769206 AAATAATTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 6 0.32
19 13 0.68
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (18 bp):
TTTATTATTTTATAAATA
Found at i:13769212 original size:19 final size:19
Alignment explanation
Indices: 13769173--13769213 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
13769163 TAATTTTATT
* * *
13769173 ATTTTATAATTATTTATTA
1 ATTTTATAAATATTAAATA
13769192 ATTTTATAAATATTAAATA
1 ATTTTATAAATATTAAATA
13769211 ATT
1 ATT
13769214 AAAATTTGTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (19 bp):
ATTTTATAAATATTAAATA
Found at i:13770265 original size:18 final size:18
Alignment explanation
Indices: 13770242--13770277 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
13770232 ACTATTTCGA
13770242 ATTATAATTATTCAAATT
1 ATTATAATTATTCAAATT
*
13770260 ATTATAATTATTTAAATT
1 ATTATAATTATTCAAATT
13770278 GAAAATTATG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (18 bp):
ATTATAATTATTCAAATT
Found at i:13773334 original size:9 final size:9
Alignment explanation
Indices: 13773322--13773384 Score: 54
Period size: 9 Copynumber: 6.6 Consensus size: 9
13773312 AAAAAATGTG
13773322 TATAAAAAA
1 TATAAAAAA
13773331 TATAAAAAAA
1 TAT-AAAAAA
*
13773341 TATAAACAA
1 TATAAAAAA
13773350 TATTAATAAAA
1 TA-TAA-AAAA
* *
13773361 AAGTAATAAA
1 TA-TAAAAAA
13773371 TATAAAAAA
1 TATAAAAAA
*
13773380 AATAA
1 TATAA
13773385 TAATAATGAA
Statistics
Matches: 43, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
9 20 0.47
10 16 0.37
11 7 0.16
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.24
Consensus pattern (9 bp):
TATAAAAAA
Found at i:13773372 original size:21 final size:18
Alignment explanation
Indices: 13773323--13773387 Score: 69
Period size: 19 Copynumber: 3.4 Consensus size: 18
13773313 AAAAATGTGT
*
13773323 ATAAAAAATATAAAAAAA
1 ATAATAAATATAAAAAAA
13773341 TATAA-ACAATATTAATAAAAA
1 -ATAATA-AATA-TAA-AAAAA
13773362 AGTAATAAATATAAAAAAA
1 A-TAATAAATATAAAAAAA
13773381 ATAATAA
1 ATAATAA
13773388 TAATGAAAAT
Statistics
Matches: 41, Mismatches: 0, Indels: 11
0.79 0.00 0.21
Matches are distributed among these distances:
18 7 0.17
19 14 0.34
20 7 0.17
21 12 0.29
22 1 0.02
ACGTcount: A:0.74, C:0.02, G:0.02, T:0.23
Consensus pattern (18 bp):
ATAATAAATATAAAAAAA
Found at i:13773388 original size:21 final size:21
Alignment explanation
Indices: 13773323--13773390 Score: 63
Period size: 21 Copynumber: 3.3 Consensus size: 21
13773313 AAAAATGTGT
*
13773323 ATAAAAAATAT-AAAAAAAT-
1 ATAATAAATATAAAAAAAATA
*
13773342 ATAA-ACAATATTAATAAAAA-A
1 ATAATA-AATA-TAAAAAAAATA
*
13773363 GTAATAAATATAAAAAAAATA
1 ATAATAAATATAAAAAAAATA
13773384 ATAATAA
1 ATAATAA
13773391 TGAAAATAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 10
0.74 0.08 0.19
Matches are distributed among these distances:
18 1 0.03
19 8 0.21
20 9 0.23
21 20 0.51
22 1 0.03
ACGTcount: A:0.74, C:0.01, G:0.01, T:0.24
Consensus pattern (21 bp):
ATAATAAATATAAAAAAAATA
Found at i:13773722 original size:18 final size:17
Alignment explanation
Indices: 13773691--13773734 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 17
13773681 TTTTTTTCAA
*
13773691 AAAATAATAA-TAAATTT
1 AAAATAA-AATTAAAGTT
13773708 AAACATAAAATTAAAGTT
1 AAA-ATAAAATTAAAGTT
13773726 AAAATAAAA
1 AAAATAAAA
13773735 CAAAATAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
17 11 0.46
18 13 0.54
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.27
Consensus pattern (17 bp):
AAAATAAAATTAAAGTT
Found at i:13787921 original size:172 final size:171
Alignment explanation
Indices: 13787626--13787971 Score: 572
Period size: 172 Copynumber: 2.0 Consensus size: 171
13787616 TGAAAGTTGC
13787626 AATTATGATAATTGATTGATGACACTCATAAAAGGTCCTGCATTGCTTTGCAAAAGTCAAGAATG
1 AATTATGATAATTGATTGATGACACTCATAAAAGGTCCTGCATTGCTTTGCAAAAGTCAAGAATG
* * *
13787691 ATGAAAAAAAGAAAAAAGAGATTGAGTTTGGAAAAATGCCCACATTCAAAATCATCAAGCTGAAG
66 ATGAAAAAAACAAAAAAGAAACTGAGTTTGGAAAAATGCCCACATTCAAAATCATCAAGCTGAAG
*
13787756 TAAAAACTCATTGGAGATGGTATC-GAATAATGATATTGGCA
131 TAAAAACTCATTGGAGATGGTATCAG-ATAATAATATTGGCA
* *
13787797 AATTTTGATAATTGATTGAT-ACCACTCATAAAATGGTCTTGCATTGCTTTGCAAAAGTCAAGAA
1 AATTATGATAATTGATTGATGA-CACTCATAAAA-GGTCCTGCATTGCTTTGCAAAAGTCAAGAA
*
13787861 TGATGAAAAAAAACAAAAAAGAAACTGAGTTTGGAAAAATGCCCACATTCAAAA-CATCAAGTTG
64 TGATG-AAAAAAACAAAAAAGAAACTGAGTTTGGAAAAATGCCCACATTCAAAATCATCAAGCTG
13787925 AAGTAAAAACTCATTGGAGATGGTATCAGATAATAATATTGGCA
128 AAGTAAAAACTCATTGGAGATGGTATCAGATAATAATATTGGCA
13787969 AAT
1 AAT
13787972 GAAAAGATGA
Statistics
Matches: 164, Mismatches: 7, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
170 1 0.01
171 30 0.18
172 87 0.53
173 46 0.28
ACGTcount: A:0.43, C:0.12, G:0.18, T:0.26
Consensus pattern (171 bp):
AATTATGATAATTGATTGATGACACTCATAAAAGGTCCTGCATTGCTTTGCAAAAGTCAAGAATG
ATGAAAAAAACAAAAAAGAAACTGAGTTTGGAAAAATGCCCACATTCAAAATCATCAAGCTGAAG
TAAAAACTCATTGGAGATGGTATCAGATAATAATATTGGCA
Found at i:13788096 original size:18 final size:19
Alignment explanation
Indices: 13788055--13788096 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
13788045 AAATAATACC
13788055 TACATTACATATATGGTAT
1 TACATTACATATATGGTAT
* *
13788074 T-CATTGCATTTATGG-AT
1 TACATTACATATATGGTAT
13788091 TACATT
1 TACATT
13788097 CTAAAAATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
17 3 0.15
18 16 0.80
19 1 0.05
ACGTcount: A:0.31, C:0.12, G:0.12, T:0.45
Consensus pattern (19 bp):
TACATTACATATATGGTAT
Found at i:13788312 original size:49 final size:48
Alignment explanation
Indices: 13788250--13788623 Score: 333
Period size: 48 Copynumber: 7.6 Consensus size: 48
13788240 TAAATAGAAT
* * *
13788250 TTTTAATGTTTCAAAGCCTTTATTTATGGGGAGCCATTCTTAAATAAGA
1 TTTTAAAGTTTCAAAGCCTCTATTTATGGGGAGCCATT-TTAAACAAGA
** * *
13788299 TTTTAAAGTTTCAAAGTTTCTATTCATAGGGAGCCATTTTAAACAAGA
1 TTTTAAAGTTTCAAAGCCTCTATTTATGGGGAGCCATTTTAAACAAGA
* *
13788347 TTTTTAAAGTTCCAAAGCCT-TCATTTATAAGGAAGGAACCATTTTCAAACAAGA
1 -TTTTAAAGTTTCAAAGCCTCT-ATTTAT--GG--GGAGCCATTTT-AAACAAGA
* ** ** * *
13788401 TTTTAAAGTTTTAAAGCCTCTGCTTATAAGGAGTCATTTTAAACAAAA
1 TTTTAAAGTTTCAAAGCCTCTATTTATGGGGAGCCATTTTAAACAAGA
* * *
13788449 TTTTAAAG-TTCTAAAGCCTCTATTTATAGGGAGCCATTTCAAACAAAA
1 TTTTAAAGTTTC-AAAGCCTCTATTTATGGGGAGCCATTTTAAACAAGA
* * * *
13788497 TTTGAAA-ATTCTAAAGCCTCTGTTTATGGGGAGCAATTTTCAAACAAGA
1 TTTTAAAGTTTC-AAAGCCTCTATTTATGGGGAGCCATTTT-AAACAAGA
* **
13788546 TTTTTAAAGTTTCAAAGCCT-TAGTTTATGGGGAGCCATTTTTAGATGAGA
1 -TTTTAAAGTTTCAAAGCCTCTA-TTTATGGGGAGCCA-TTTTAAACAAGA
* *
13788596 TTCTTAAATTTTCAAAACCTCTATTTAT
1 TT-TTAAAGTTTCAAAGCCTCTATTTAT
13788624 TAGGAATTTC
Statistics
Matches: 265, Mismatches: 43, Indels: 33
0.78 0.13 0.10
Matches are distributed among these distances:
47 2 0.01
48 90 0.34
49 72 0.27
50 51 0.19
51 10 0.04
53 31 0.12
54 9 0.03
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.37
Consensus pattern (48 bp):
TTTTAAAGTTTCAAAGCCTCTATTTATGGGGAGCCATTTTAAACAAGA
Found at i:13790785 original size:10 final size:9
Alignment explanation
Indices: 13790771--13790795 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
13790761 ATTTTTGATA
13790771 ATTTTTTTT
1 ATTTTTTTT
13790780 ATTTTTTTT
1 ATTTTTTTT
13790789 ATTTTTT
1 ATTTTTT
13790796 AATTTTTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (9 bp):
ATTTTTTTT
Found at i:13791010 original size:41 final size:41
Alignment explanation
Indices: 13790922--13791017 Score: 105
Period size: 40 Copynumber: 2.4 Consensus size: 41
13790912 AAAAATGTGT
13790922 ATAAA-AAATACGAAAAAGGTATAAACAATAATAATAAAAAA
1 ATAAATAAATA-GAAAAAGGTATAAACAATAATAATAAAAAA
*
13790963 GT-AATAAATAGAAAAAGGTA-AATA-AAT-ATAATAAATAATA
1 ATAAATAAATAGAAAAAGGTATAA-ACAATAATAATAAA-AA-A
13791003 ATAAATAAATA-AAAA
1 ATAAATAAATAGAAAA
13791018 TCTTCGAGGA
Statistics
Matches: 48, Mismatches: 2, Indels: 11
0.79 0.03 0.18
Matches are distributed among these distances:
38 8 0.17
39 7 0.15
40 19 0.40
41 14 0.29
ACGTcount: A:0.70, C:0.02, G:0.07, T:0.21
Consensus pattern (41 bp):
ATAAATAAATAGAAAAAGGTATAAACAATAATAATAAAAAA
Found at i:13791581 original size:25 final size:24
Alignment explanation
Indices: 13791526--13791581 Score: 67
Period size: 25 Copynumber: 2.3 Consensus size: 24
13791516 CCTTGCTTCG
* *
13791526 ATCACTTTAAAATAATAATAATAT
1 ATCAATTTAAAATAATAATAATAA
* *
13791550 ATAAATTTAATAATAATGATAATAA
1 ATCAATTTAA-AATAATAATAATAA
13791575 ATCAATT
1 ATCAATT
13791582 AGCGAGTAAC
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
24 8 0.31
25 18 0.69
ACGTcount: A:0.55, C:0.05, G:0.02, T:0.38
Consensus pattern (24 bp):
ATCAATTTAAAATAATAATAATAA
Found at i:13796114 original size:13 final size:13
Alignment explanation
Indices: 13796085--13796140 Score: 53
Period size: 13 Copynumber: 4.2 Consensus size: 13
13796075 TTTATTATTT
13796085 TTTATTATTT-TA
1 TTTATTATTTCTA
13796097 TTTTATTATTTCTA
1 -TTTATTATTTCTA
*
13796111 TTTATT-TATTCCA
1 TTTATTAT-TTCTA
*
13796124 TTTATTTATTTTTA
1 TTTA-TTATTTCTA
13796138 TTT
1 TTT
13796141 TTTGTATTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
12 1 0.03
13 24 0.67
14 10 0.28
15 1 0.03
ACGTcount: A:0.21, C:0.05, G:0.00, T:0.73
Consensus pattern (13 bp):
TTTATTATTTCTA
Found at i:13796115 original size:23 final size:23
Alignment explanation
Indices: 13796074--13796117 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
13796064 ATTTTGGTAT
*
13796074 TTTTATTATTTTTTATTATTTTA
1 TTTTATTATTTTATATTATTTTA
13796097 TTTTATTATTTCTAT-TTATTT
1 TTTTATTATTT-TATATTATTT
13796118 ATTCCATTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 17 0.89
24 2 0.11
ACGTcount: A:0.20, C:0.02, G:0.00, T:0.77
Consensus pattern (23 bp):
TTTTATTATTTTATATTATTTTA
Found at i:13796149 original size:23 final size:22
Alignment explanation
Indices: 13796079--13796149 Score: 54
Period size: 23 Copynumber: 3.1 Consensus size: 22
13796069 GGTATTTTTA
*
13796079 TTATTTTTTATTATTTTATTTTA-
1 TTATTTTTT-TTATTTT-TTCTAT
* * *
13796102 TTATTTCTATTTATTTATTCCAT
1 TTATTT-TTTTTATTTTTTCTAT
*
13796125 TTATTTATTTTTATTTTTTGTAT
1 TTATTT-TTTTTATTTTTTCTAT
13796148 TT
1 TT
13796150 TTACATGATA
Statistics
Matches: 37, Mismatches: 9, Indels: 4
0.74 0.18 0.08
Matches are distributed among these distances:
22 3 0.08
23 32 0.86
24 2 0.05
ACGTcount: A:0.20, C:0.04, G:0.01, T:0.75
Consensus pattern (22 bp):
TTATTTTTTTTATTTTTTCTAT
Found at i:13796151 original size:10 final size:9
Alignment explanation
Indices: 13796071--13796151 Score: 56
Period size: 9 Copynumber: 8.8 Consensus size: 9
13796061 GCTATTTTGG
*
13796071 TATTTTTAT
1 TATTTTTTT
13796080 TATTTTTTAT
1 TATTTTTT-T
13796090 TATTTTATTT
1 TATTTT-TTT
* *
13796100 TATTATTTC
1 TATTTTTTT
*
13796109 TA-TTTATT
1 TATTTTTTT
***
13796117 TATTCCATT
1 TATTTTTTT
13796126 TATTTATTTT
1 TATTT-TTTT
*
13796136 TATTTTTTG
1 TATTTTTTT
13796145 TATTTTT
1 TATTTTT
13796152 ACATGATAGA
Statistics
Matches: 56, Mismatches: 12, Indels: 8
0.74 0.16 0.11
Matches are distributed among these distances:
8 5 0.09
9 29 0.52
10 20 0.36
11 2 0.04
ACGTcount: A:0.20, C:0.04, G:0.01, T:0.75
Consensus pattern (9 bp):
TATTTTTTT
Found at i:13796354 original size:403 final size:400
Alignment explanation
Indices: 13795871--13796663 Score: 1505
Period size: 402 Copynumber: 2.0 Consensus size: 400
13795861 CACCTAAAGA
13795871 TTTCATAGAAAATTTACCATTTAAAATTTTTAAGAATCTCATCATTGGGTAATTAGCATTTATTT
1 TTTCATAGAAAATTTACCATTTAAAATTTTTAAGAATCTCATCATTGGGTAATTAGCATTTATTT
13795936 CCAAAATTTTTATTAAAATTTTTTATATTATTTTTAATTGAAAATAAATATTAATTATTGTTGTT
66 CCAAAATTTTTATTAAAATTTTTTATATTATTTTTAATTGAAAATAAAT-TTAATTATTGTTGTT
*
13796001 GAAATTTTATCTAAATTATTTTATCATTTGGGATAAATTCAAATAAAATTTCTCGCCTAGGCTAT
130 GAAATTTTATCTAAATTATTTTACCATTTGGGATAAATTCAAATAAAATTTCTCGCCTAGGCTAT
13796066 TTTGGTATTTTTATTATTTTTTATTATTTTATTTTATTATTTCTATTTATTTATTCCATTTATTT
195 TTTGGTATTTTTATTATTTTTTATTATTTTATTTTATTATTTCTATTTATTTATTCCATTTATTT
13796131 ATTTTTATTTTTTGTATTTTTACATGATAGATTTTAAGAAGAGAAAAAAAATATAAAAAAAAATA
260 ATTTTTATTTTTTGTATTTTTACATGATAGATTTTAAGAAGAG--AAAAAATATAAAAAAAAATA
* *
13796196 AAATATTTTTTTAGAATAAATAATAATTATTCAATGATGGCATTTTTTAAAATTTCAAATGGCAT
323 AAATATTTTTTTAGAATAAATAATAATTATTCAATGATGGCAATTTTAAAAATTTCAAATGGCAT
13796261 TTTTTATAAAATT
388 TTTTTATAAAATT
13796274 TTTCATAGAAAATTTACCATTTAAAATTTTTAAGAATCTCATCATTGGGTAATTAGCATTTATTT
1 TTTCATAGAAAATTTACCATTTAAAATTTTTAAGAATCTCATCATTGGGTAATTAGCATTTATTT
*
13796339 TCAAAATTTTTATTAAAATTTTTTATATTATTTTTAATTGAAAATAAATTTAATTATTGTTGTTG
66 CCAAAATTTTTATTAAAATTTTTTATATTATTTTTAATTGAAAATAAATTTAATTATTGTTGTTG
13796404 AAATTTTATCTAAATTATTTTACCATTTGGGATAAATTCAAATAAAATTTCTCGCCTAGGCTATT
131 AAATTTTATCTAAATTATTTTACCATTTGGGATAAATTCAAATAAAATTTCTCGCCTAGGCTATT
13796469 TTGGTATTTTTATTATTTTTTATTATTTTATTTTATTATTTCTATTTATTTATTCCATTTATTTA
196 TTGGTATTTTTATTATTTTTTATTATTTTATTTTATTATTTCTATTTATTTATTCCATTTATTTA
* *
13796534 TTTTTCTTTTTTGTATTTTTACATGATAGATTTTAAGAAGAGAAAAAATATAAAACAAAATAAAA
261 TTTTTATTTTTTGTATTTTTACATGATAGATTTTAAGAAGAGAAAAAATATAAAAAAAAATAAAA
13796599 TATTTTTTTAGAATAAATAATAATTATTCAATGATGGCAATTTTAAAAATTTCAAATGGCATTTT
326 TATTTTTTTAGAATAAATAATAATTATTCAATGATGGCAATTTTAAAAATTTCAAATGGCATTTT
13796664 AGAATAGGCG
Statistics
Matches: 384, Mismatches: 6, Indels: 3
0.98 0.02 0.01
Matches are distributed among these distances:
400 85 0.22
402 186 0.48
403 113 0.29
ACGTcount: A:0.36, C:0.07, G:0.08, T:0.50
Consensus pattern (400 bp):
TTTCATAGAAAATTTACCATTTAAAATTTTTAAGAATCTCATCATTGGGTAATTAGCATTTATTT
CCAAAATTTTTATTAAAATTTTTTATATTATTTTTAATTGAAAATAAATTTAATTATTGTTGTTG
AAATTTTATCTAAATTATTTTACCATTTGGGATAAATTCAAATAAAATTTCTCGCCTAGGCTATT
TTGGTATTTTTATTATTTTTTATTATTTTATTTTATTATTTCTATTTATTTATTCCATTTATTTA
TTTTTATTTTTTGTATTTTTACATGATAGATTTTAAGAAGAGAAAAAATATAAAAAAAAATAAAA
TATTTTTTTAGAATAAATAATAATTATTCAATGATGGCAATTTTAAAAATTTCAAATGGCATTTT
TTATAAAATT
Found at i:13796502 original size:13 final size:14
Alignment explanation
Indices: 13796486--13796515 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
13796476 TTTTATTATT
13796486 TTTTATTATTT-TA
1 TTTTATTATTTCTA
13796499 TTTTATTATTTCTA
1 TTTTATTATTTCTA
13796513 TTT
1 TTT
13796516 ATTTATTCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.69
14 5 0.31
ACGTcount: A:0.20, C:0.03, G:0.00, T:0.77
Consensus pattern (14 bp):
TTTTATTATTTCTA
Found at i:13796516 original size:13 final size:13
Alignment explanation
Indices: 13796487--13796536 Score: 50
Period size: 13 Copynumber: 3.8 Consensus size: 13
13796477 TTTATTATTT
13796487 TTTATTATTT-TA
1 TTTATTATTTCTA
13796499 TTTTATTATTTCTA
1 -TTTATTATTTCTA
*
13796513 TTTATT-TATTCCA
1 TTTATTAT-TTCTA
13796526 TTTATTTATTT
1 TTTA-TTATTT
13796537 TTCTTTTTTG
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
12 1 0.03
13 24 0.75
14 6 0.19
15 1 0.03
ACGTcount: A:0.22, C:0.06, G:0.00, T:0.72
Consensus pattern (13 bp):
TTTATTATTTCTA
Found at i:13796517 original size:23 final size:23
Alignment explanation
Indices: 13796476--13796519 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
13796466 ATTTTGGTAT
*
13796476 TTTTATTATTTTTTATTATTTTA
1 TTTTATTATTTTATATTATTTTA
13796499 TTTTATTATTTCTAT-TTATTT
1 TTTTATTATTT-TATATTATTT
13796520 ATTCCATTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 17 0.89
24 2 0.11
ACGTcount: A:0.20, C:0.02, G:0.00, T:0.77
Consensus pattern (23 bp):
TTTTATTATTTTATATTATTTTA
Found at i:13797503 original size:16 final size:15
Alignment explanation
Indices: 13797482--13797515 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
13797472 TGTTTATCAA
13797482 TTTTATTTTTACTTTT
1 TTTTA-TTTTACTTTT
*
13797498 TTTTATTTTCCTTTT
1 TTTTATTTTACTTTT
13797513 TTT
1 TTT
13797516 ACTATTATCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.09, C:0.09, G:0.00, T:0.82
Consensus pattern (15 bp):
TTTTATTTTACTTTT
Found at i:13797619 original size:4 final size:4
Alignment explanation
Indices: 13797607--13797705 Score: 62
Period size: 4 Copynumber: 25.5 Consensus size: 4
13797597 TAAACAAAAA
* * *** * *
13797607 AAAT GAAT AAAT AAAA AAAT AAA- ACCC AAAA AAAT AAAT AAAT GAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT
* * * *
13797654 AGAT AAAT AAAT AACT -AAT AAAT AAAT AACT -AAT AAA- AAAC AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT
13797699 GAAAT AA
1 -AAAT AA
13797706 TGGGTAATTA
Statistics
Matches: 71, Mismatches: 19, Indels: 10
0.71 0.19 0.10
Matches are distributed among these distances:
3 8 0.11
4 59 0.83
5 4 0.06
ACGTcount: A:0.71, C:0.06, G:0.04, T:0.19
Consensus pattern (4 bp):
AAAT
Found at i:13797620 original size:21 final size:19
Alignment explanation
Indices: 13797583--13797630 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 19
13797573 TGAAAAAATG
*
13797583 AAAAAAATCAAAGATAAACA
1 AAAAAAATCAAAAATAAA-A
*
13797603 AAAAAAATGAATAAATAAAA
1 AAAAAAATCAA-AAATAAAA
13797623 AAATAAAA
1 AAA-AAAA
13797631 CCCAAAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 14 0.58
21 10 0.42
ACGTcount: A:0.79, C:0.04, G:0.04, T:0.12
Consensus pattern (19 bp):
AAAAAAATCAAAAATAAAA
Found at i:13797676 original size:15 final size:15
Alignment explanation
Indices: 13797639--13797690 Score: 79
Period size: 15 Copynumber: 3.4 Consensus size: 15
13797629 AACCCAAAAA
13797639 AATAAATAAATGAA-T
1 AATAAATAAAT-AACT
13797654 AGATAAATAAATAACT
1 A-ATAAATAAATAACT
13797670 AATAAATAAATAACT
1 AATAAATAAATAACT
13797685 AATAAA
1 AATAAA
13797691 AAACAAATGA
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
15 23 0.66
16 12 0.34
ACGTcount: A:0.67, C:0.04, G:0.04, T:0.25
Consensus pattern (15 bp):
AATAAATAAATAACT
Found at i:13798144 original size:45 final size:45
Alignment explanation
Indices: 13797928--13798410 Score: 256
Period size: 44 Copynumber: 10.6 Consensus size: 45
13797918 ATAAGTAGAA
* ** *
13797928 GCTC-ACAACTTTTGGAAAAATAAATACGGCTCTTT-TAAGCAAAG
1 GCTCAACAACTTTTGAAAAAATAAATATAGCT-TTTCTAATCAAAG
** * ** *
13797972 GCTCAATGAC-TTTGAAAAAATAAATAAAGCTCCTCTAATCAGAG
1 GCTCAACAACTTTTGAAAAAATAAATATAGCTTTTCTAATCAAAG
* ** * * **
13798016 ACTCAATGAC-TTTGAAAAAATAAATAAATCTACTCTAATCAAAG
1 GCTCAACAACTTTTGAAAAAATAAATATAGCTTTTCTAATCAAAG
** * * *
13798060 GCTCAATTA-TTTTGAAAAACTAAATAAAGCTTTTCTAATCATAG
1 GCTCAACAACTTTTGAAAAAATAAATATAGCTTTTCTAATCAAAG
* * * *
13798104 GCTCAACAACTTTTTAAAAAATAAATATAGTTTTTTTAATCAGAG
1 GCTCAACAACTTTTGAAAAAATAAATATAGCTTTTCTAATCAAAG
* *
13798149 GCTCAACAACTGTTGAAAAAATAAATATGGCAAAATAAATAGGTTCT--TCTAATTAG
1 GCTCAACAACTTTTGAAAAAATAAATATAGC----T---T---TTCTAATC-AA--AG
* ** * **
13798205 AG-GCTTTACAACTTTTGAAAAAATAAATATGGCTCCTCTAATCAAAG
1 -GCTC-AA-CAACTTTTGAAAAAATAAATATAGCTTTTCTAATCAAAG
* * * **
13798252 GCTCAACAACTTTTGAAAAAATAATTAAAGGTCCTCTAATCAAAG
1 GCTCAACAACTTTTGAAAAAATAAATATAGCTTTTCTAATCAAAG
* * *
13798297 GCTCAACAACTTTTG-AAAAATGAAATATGGCTTATATAATCAAAG
1 GCTCAACAACTTTTGAAAAAAT-AAATATAGCTTTTCTAATCAAAG
* * * *
13798342 GCTTAACAA-ATTTG-AAAAATAAATA-AGGCTCCTT-TAAGCAAAG
1 GCTCAACAACTTTTGAAAAAATAAATATA-GCT-TTTCTAATCAAAG
* *
13798385 GCTCAACAAC-TTTAAAAAAAAAAATA
1 GCTCAACAACTTTTGAAAAAATAAATA
13798411 AAGTTCCTCG
Statistics
Matches: 348, Mismatches: 63, Indels: 56
0.75 0.13 0.12
Matches are distributed among these distances:
43 28 0.08
44 139 0.40
45 133 0.38
46 1 0.00
47 3 0.01
48 3 0.01
49 3 0.01
50 2 0.01
52 1 0.00
53 2 0.01
54 2 0.01
55 3 0.01
56 3 0.01
57 1 0.00
58 24 0.07
ACGTcount: A:0.45, C:0.15, G:0.12, T:0.29
Consensus pattern (45 bp):
GCTCAACAACTTTTGAAAAAATAAATATAGCTTTTCTAATCAAAG
Found at i:13798216 original size:58 final size:59
Alignment explanation
Indices: 13798121--13798237 Score: 164
Period size: 58 Copynumber: 2.0 Consensus size: 59
13798111 AACTTTTTAA
* *
13798121 AAAATAAATATAGTTTTTTTAATCAGAGGCTCAACAACTGTTGAAAAAATAAATATGGC
1 AAAATAAATATAGTTCTTCTAATCAGAGGCTCAACAACTGTTGAAAAAATAAATATGGC
* * ** *
13798180 AAAATAAATA-GGTTCTTCTAATTAGAGGCTTTACAACTTTTGAAAAAATAAATATGGC
1 AAAATAAATATAGTTCTTCTAATCAGAGGCTCAACAACTGTTGAAAAAATAAATATGGC
13798238 TCCTCTAATC
Statistics
Matches: 51, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
58 41 0.80
59 10 0.20
ACGTcount: A:0.44, C:0.10, G:0.14, T:0.32
Consensus pattern (59 bp):
AAAATAAATATAGTTCTTCTAATCAGAGGCTCAACAACTGTTGAAAAAATAAATATGGC
Found at i:13798307 original size:90 final size:88
Alignment explanation
Indices: 13798212--13798410 Score: 251
Period size: 90 Copynumber: 2.2 Consensus size: 88
13798202 TAGAGGCTTT
* * * *
13798212 ACAACTTTTGAAAAAATAAATATGGCTCCTCTAATCAAAGGCTCAACAACTTTTGAAAAAATAAT
1 ACAACTTTTGAAAAAATAAATATGGCTCATATAATCAAAGGCTCAACAA-ATTTG-AAAAATAAA
*
13798277 TAAAGG-TCCTCTAATCAAAGGCTCA
64 T-AAGGCTCCTCTAAGCAAAGGCTCA
* *
13798302 ACAACTTTTG-AAAAATGAAATATGGCTTATATAATCAAAGGCTTAACAAATTTGAAAAATAAAT
1 ACAACTTTTGAAAAAAT-AAATATGGCTCATATAATCAAAGGCTCAACAAATTTGAAAAATAAAT
*
13798366 AAGGCTCCTTTAAGCAAAGGCTCA
65 AAGGCTCCTCTAAGCAAAGGCTCA
* *
13798390 ACAAC-TTTAAAAAAAAAAATA
1 ACAACTTTTGAAAAAATAAATA
13798411 AAGTTCCTCG
Statistics
Matches: 96, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
87 12 0.12
88 36 0.38
89 10 0.10
90 38 0.40
ACGTcount: A:0.47, C:0.16, G:0.11, T:0.26
Consensus pattern (88 bp):
ACAACTTTTGAAAAAATAAATATGGCTCATATAATCAAAGGCTCAACAAATTTGAAAAATAAATA
AGGCTCCTCTAAGCAAAGGCTCA
Found at i:13806578 original size:19 final size:19
Alignment explanation
Indices: 13806554--13806593 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
13806544 CAAAATTAAT
13806554 AAATATTATATTTAATATA
1 AAATATTATATTTAATATA
* *
13806573 AAATATTATTTTTAATTTA
1 AAATATTATATTTAATATA
13806592 AA
1 AA
13806594 TATAAAATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (19 bp):
AAATATTATATTTAATATA
Found at i:13806632 original size:27 final size:25
Alignment explanation
Indices: 13806585--13806635 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
13806575 ATATTATTTT
* *
13806585 TAATTTAAATATAAAATTAAATAAA
1 TAATATAAATATAAAAATAAATAAA
13806610 TAATATAAATATATATAAATAAATAA
1 TAATATAAATATA-A-AAATAAATAA
13806636 TTAAAAAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 12 0.55
26 1 0.05
27 9 0.41
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (25 bp):
TAATATAAATATAAAAATAAATAAA
Found at i:13811009 original size:230 final size:232
Alignment explanation
Indices: 13810601--13811068 Score: 814
Period size: 230 Copynumber: 2.0 Consensus size: 232
13810591 ATTTCTTAGG
13810601 AAATTTACCATTTGAAATTTCTAAGAATCTTATCATTGGATAATTTTCAAATATTTTCAATCCAA
1 AAATTTACCATTTGAAATTTCTAAGAATCTTATCATTGGATAATTTTCAAATATTTTCAATCCAA
* * *
13810666 CATTTTTTCTTTGGAAAAGAATACAATTACTTTTATTGAAATTTCATCTAAATTATTTCACCATT
66 AATTTTTTCTTTAGAAAAGAATACAATTACTTTTATTAAAATTTCATCTAAATTATTTCACCATT
*
13810731 TAAGACAAATTTAGAAAAATTTTCCACCTAAAGATTTCTTAAAAAATTTATCATTTGAAATTTTT
131 TAAGACAAATTTAGAAAAATTTTCCACCTAAAGATTTCTTAAAAAATTTACCATTTGAAATTTTT
13810796 AAGAATCTCATCATTGGATAATTAGCATTTATTTCCA
196 AAGAATCTCATCATTGGATAATTAGCATTTATTTCCA
13810833 AAATTTACCATTTGAAATTTCTAAGAATCTTATCATTGGATAATTTTC-AATATTTTCAATCCAA
1 AAATTTACCATTTGAAATTTCTAAGAATCTTATCATTGGATAATTTTCAAATATTTTCAATCCAA
** *
13810897 AATTTTTTCTTTAGAAAAGAATGTAATTACTTTTA-TAAAATTTTATCTAAATTATTTCACCATT
66 AATTTTTTCTTTAGAAAAGAATACAATTACTTTTATTAAAATTTCATCTAAATTATTTCACCATT
* * * *
13810961 TAGGACAAATTTAGAGAAATTTTTCACCTAAAGATTTCTTATAAAATTTACCATTTGAAATTTTT
131 TAAGACAAATTTAGAAAAATTTTCCACCTAAAGATTTCTTAAAAAATTTACCATTTGAAATTTTT
*
13811026 AAGAATCTCATCATTGGATAATTAGCATTTATTTTCA
196 AAGAATCTCATCATTGGATAATTAGCATTTATTTCCA
13811063 AAATTT
1 AAATTT
13811069 TTATTAAAAT
Statistics
Matches: 224, Mismatches: 12, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
230 129 0.58
231 47 0.21
232 48 0.21
ACGTcount: A:0.38, C:0.12, G:0.07, T:0.43
Consensus pattern (232 bp):
AAATTTACCATTTGAAATTTCTAAGAATCTTATCATTGGATAATTTTCAAATATTTTCAATCCAA
AATTTTTTCTTTAGAAAAGAATACAATTACTTTTATTAAAATTTCATCTAAATTATTTCACCATT
TAAGACAAATTTAGAAAAATTTTCCACCTAAAGATTTCTTAAAAAATTTACCATTTGAAATTTTT
AAGAATCTCATCATTGGATAATTAGCATTTATTTCCA
Found at i:13811887 original size:12 final size:12
Alignment explanation
Indices: 13811872--13811906 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
13811862 ATTGAAATCT
13811872 AAAAATTTTCTA
1 AAAAATTTTCTA
* *
13811884 AAAAATTTCCAA
1 AAAAATTTTCTA
13811896 AAAAATTTTCT
1 AAAAATTTTCT
13811907 TTCTTGAATC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.37
Consensus pattern (12 bp):
AAAAATTTTCTA
Found at i:13812229 original size:14 final size:15
Alignment explanation
Indices: 13812206--13812238 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
13812196 TGTTTATCAA
13812206 TTTTATTTTTACTTT
1 TTTTATTTTTACTTT
*
13812221 TTTTA-TTTTCCTTT
1 TTTTATTTTTACTTT
13812235 TTTT
1 TTTT
13812239 TAACTATTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 12 0.71
15 5 0.29
ACGTcount: A:0.09, C:0.09, G:0.00, T:0.82
Consensus pattern (15 bp):
TTTTATTTTTACTTT
Found at i:13812342 original size:8 final size:8
Alignment explanation
Indices: 13812321--13812405 Score: 59
Period size: 8 Copynumber: 10.6 Consensus size: 8
13812311 AAAATCAAAG
13812321 ATAAAC-A
1 ATAAACAA
13812328 A-AAACAA
1 ATAAACAA
13812335 ATAAACAA
1 ATAAACAA
*
13812343 ATAAATAA
1 ATAAACAA
*
13812351 ATAAATAA
1 ATAAACAA
*
13812359 ATAAA-AG
1 ATAAACAA
13812366 ATAAAACCCAA
1 AT-AAA--CAA
* *
13812377 AAAAATAA
1 ATAAACAA
13812385 ATAAACAA
1 ATAAACAA
* *
13812393 ATAGATAA
1 ATAAACAA
13812401 ATAAA
1 ATAAA
13812406 TGAAATAATG
Statistics
Matches: 62, Mismatches: 10, Indels: 11
0.75 0.12 0.13
Matches are distributed among these distances:
6 4 0.06
7 6 0.10
8 47 0.76
10 3 0.05
11 2 0.03
ACGTcount: A:0.74, C:0.08, G:0.02, T:0.15
Consensus pattern (8 bp):
ATAAACAA
Found at i:13812350 original size:4 final size:4
Alignment explanation
Indices: 13812333--13812413 Score: 67
Period size: 4 Copynumber: 20.5 Consensus size: 4
13812323 AAACAAAAAC
* * *** *
13812333 AAAT AAAC AAAT AAAT AAAT AAAT AAAT AAA- AGAT AAA- ACCC AAAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT
* *
13812379 AAAT AAAT AAAC AAAT AGAT AAAT AAAT GAAAT AA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT -AAAT AA
13812414 TGGATAATTG
Statistics
Matches: 60, Mismatches: 14, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
3 3 0.05
4 53 0.88
5 4 0.07
ACGTcount: A:0.73, C:0.06, G:0.04, T:0.17
Consensus pattern (4 bp):
AAAT
Found at i:13815180 original size:16 final size:16
Alignment explanation
Indices: 13815159--13815200 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
13815149 CATAATTAAT
13815159 TATTTA-ATTTTAAAAA
1 TATTTATATTTT-AAAA
*
13815175 TATTTATATTTTTAAA
1 TATTTATATTTTAAAA
*
13815191 TATTTTTATT
1 TATTTATATT
13815201 GATTCAATTG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
16 18 0.78
17 5 0.22
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
TATTTATATTTTAAAA
Found at i:13824705 original size:11 final size:13
Alignment explanation
Indices: 13824689--13824720 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
13824679 AGAATTTTAT
13824689 CTACAGT-AC-TG
1 CTACAGTGACTTG
13824700 CTACAGTGACTTG
1 CTACAGTGACTTG
13824713 CTACAGTG
1 CTACAGTG
13824721 CTTTCGATGG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.37
12 2 0.11
13 10 0.53
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.28
Consensus pattern (13 bp):
CTACAGTGACTTG
Found at i:13833601 original size:556 final size:558
Alignment explanation
Indices: 13832545--13833659 Score: 1697
Period size: 556 Copynumber: 2.0 Consensus size: 558
13832535 ATGGAAATCG
* * * * *
13832545 TAATAAATCATCAGTTTTTAGGTTAAAAACTTTTGATGCTTTTTTTTTCTCGTGCTTCTTTATTT
1 TAATAAATCATCAGATTTTAGGTTAAAAACTTTTGATGCTTTTCTGTTCCCATGCTTCTTTATTT
* *
13832610 GGGGATAGGAATTTGACTTTATTCTAGATCTGTTTAATCTTCAGAACTATTAGTGTCATTTGATG
66 GGGGATAGGAATTTGACTTTATTCTAGATCTATTTAATCTTCAGAACTATCAGTGTCATTTGATG
13832675 TGGTTTCATCTGATGAAACTGGTTCATCCTTTACTATTGGGTTAGTAGCAAGAATTTCAAAATTA
131 TGGTTTCATCTGATGAAACTGGTTCATCCTTTACTATTGGGTTAGTAGCAAGAATTTCAAAATTA
* ** *
13832740 TCAGCTACTAAATCACTATATGCTTCTTTGCTACTAACAATGGTGGTGTCATAGTAAAGCATATA
196 TAAGCTACTAAATCACTATATGCTTCTTCACTACTAACAATGGTGGAGTCATAGTAAAGCATATA
*
13832805 ATGAGAATTATACTTAATAAAGAGTCCTTTATGTTCTTTATAAAGAGTCTCAATAGCTTGAAAAT
261 ATGAGAATTATACTTAATAAAGAGTCCTTTATGTTCTTCATAAAGAGTCTCAATAGCTTGAAAAT
13832870 AATCAATCCGTTGTTGCAAATCTTCAGTTTGTTCCATTTTATACTTAAAATTTTCAATAATATAT
326 AATCAATCCGTTGTTGCAAATCTTCAGTTTGTTCCATTTTATACTTAAAATTTTCAATAATATAT
* * * *
13832935 TTATAAGAGTCGAAATCAAGTTGTTTTTGTTTCTCCTTTACTAAATAAGATGAAGGTTTTTCATC
391 TTATAAGAGTCAAAATAAAGTTGTTCTTGTTTCTCCTTTACTAAATAAGATGAAAGTTTTTCATC
* * *
13833000 ATTCATCATAACATTACCATAATAAAGAGGTCTAAAGTCTGTAGATGTGTCT-AGAGGAACATGT
456 ATTCATCATAACATTACCATAATAAAAAGGTCCAAAGTCTGTAGATGTGTCTGA-AAGAACATGT
*
13833064 CTTTCATCCATCTTTTCTATTAGCAAATCTACTTTATCT
520 CTTTCATCCATCTTTTCTACTAGCAAATCTACTTTATCT
*
13833103 TAATAAATCATCA-ATTTTGGGTTAAAAA-TTTCTGATGCTTTTCTGTTCCCATGC-TCTTTTAT
1 TAATAAATCATCAGATTTTAGGTTAAAAACTTT-TGATGCTTTTCTGTTCCCATGCTTC-TTTAT
* * * *
13833165 TTGAGGGATAGGAATTTGACTTTGTTCTAGATCTATTTGATCTTTAGAACTATCATTGTCATTTG
64 TTG-GGGATAGGAATTTGACTTTATTCTAGATCTATTTAATCTTCAGAACTATCAGTGTCATTTG
* * *
13833230 ATGTGGTTTCATTTGATGAAACTGGTTCATCCTTTACTACTT-TGTTAGTAGCAAGAATTTTAAA
128 ATGTGGTTTCATCTGATGAAACTGGTTCATCCTTTACTA-TTGGGTTAGTAGCAAGAATTTCAAA
* * * * *
13833294 ATTATAAGCTA-TAAATCACTATGTGCTTCTTCACTACTGATAATGGTGGAGTTATAGTTAAGCA
192 ATTATAAGCTACTAAATCACTATATGCTTCTTCACTACTAACAATGGTGGAGTCATAGTAAAGCA
* * *
13833358 TATAATGATAATTATCCTTAATAAA-AGTCCTTTATGTTCTTCATAAAGAGTCTTAATAGCTTGA
257 TATAATGAGAATTATACTTAATAAAGAGTCCTTTATGTTCTTCATAAAGAGTCTCAATAGCTTGA
* * ** * * *
13833422 AGATAATCAATCTGTTGTTGCGGATCTTTAGTTTTTTTCATTTTATACTTAAAATTTTCAATAAT
322 AAATAATCAATCCGTTGTTGCAAATCTTCAGTTTGTTCCATTTTATACTTAAAATTTTCAATAAT
*
13833487 ATATTTATAAGAGTCAAAATAAAGTTGTTCTTGTTTCTCCTTTGCTAAGA-AAGATGAAAGTTTT
387 ATATTTATAAGAGTCAAAATAAAGTTGTTCTTGTTTCTCCTTTACTAA-ATAAGATGAAAGTTTT
*
13833551 TCATCATTCATCATAACATTACCATAATAAAAAGGTCCAAAGTTTGTAGATGTGTCTGAAAGAAC
451 TCATCATTCATCATAACATTACCATAATAAAAAGGTCCAAAGTCTGTAGATGTGTCTGAAAGAAC
**
13833616 ATGTCTTTGGTCCATCTTTTCTACTAGCAAATCTACTTTATCT
516 ATGTCTTTCATCCATCTTTTCTACTAGCAAATCTACTTTATCT
13833659 T
1 T
13833660 CTATAGTATC
Statistics
Matches: 504, Mismatches: 47, Indels: 14
0.89 0.08 0.02
Matches are distributed among these distances:
556 257 0.51
557 109 0.22
558 136 0.27
559 2 0.00
ACGTcount: A:0.30, C:0.14, G:0.14, T:0.41
Consensus pattern (558 bp):
TAATAAATCATCAGATTTTAGGTTAAAAACTTTTGATGCTTTTCTGTTCCCATGCTTCTTTATTT
GGGGATAGGAATTTGACTTTATTCTAGATCTATTTAATCTTCAGAACTATCAGTGTCATTTGATG
TGGTTTCATCTGATGAAACTGGTTCATCCTTTACTATTGGGTTAGTAGCAAGAATTTCAAAATTA
TAAGCTACTAAATCACTATATGCTTCTTCACTACTAACAATGGTGGAGTCATAGTAAAGCATATA
ATGAGAATTATACTTAATAAAGAGTCCTTTATGTTCTTCATAAAGAGTCTCAATAGCTTGAAAAT
AATCAATCCGTTGTTGCAAATCTTCAGTTTGTTCCATTTTATACTTAAAATTTTCAATAATATAT
TTATAAGAGTCAAAATAAAGTTGTTCTTGTTTCTCCTTTACTAAATAAGATGAAAGTTTTTCATC
ATTCATCATAACATTACCATAATAAAAAGGTCCAAAGTCTGTAGATGTGTCTGAAAGAACATGTC
TTTCATCCATCTTTTCTACTAGCAAATCTACTTTATCT
Found at i:13847580 original size:32 final size:32
Alignment explanation
Indices: 13847535--13847607 Score: 128
Period size: 32 Copynumber: 2.3 Consensus size: 32
13847525 ACTTGGTATA
*
13847535 GATCATGGGTTTTACTCGGATGATCTCTTTTG
1 GATCATGGATTTTACTCGGATGATCTCTTTTG
*
13847567 GATCATGGATTTTACTTGGATGATCTCTTTTG
1 GATCATGGATTTTACTCGGATGATCTCTTTTG
13847599 GATCATGGA
1 GATCATGGA
13847608 GAGTAAGCTC
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 39 1.00
ACGTcount: A:0.19, C:0.14, G:0.25, T:0.42
Consensus pattern (32 bp):
GATCATGGATTTTACTCGGATGATCTCTTTTG
Found at i:13850492 original size:866 final size:867
Alignment explanation
Indices: 13848765--13850495 Score: 2874
Period size: 866 Copynumber: 2.0 Consensus size: 867
13848755 GAGATTTTCT
* *
13848765 CATAATATTTTTGAGTTTAACCATACATTCTTCTTCGATAGTTGTTGTACCTATAAAAGATGTAA
1 CATAATATTTTTGAGTTTAACCATACATTCTCCTTCGATAGTTGTTATACCTATAAAAGATGTAA
* *
13848830 CTGAAACATTGTCTTAGTTAGATTCAGTATTTAGCATGAAAATAAAATCAGATTCATCGTCAGAA
66 CTGAAACATTGTCTTAGTTAGATTCAGTATTCAACATGAAAATAAAATCAGATTCATCGTCAGAA
* * * *
13848895 GAACTATAATCAGTTTTTGAAAAAACTTCATAATGGATTTCTTCATCAGATAATTCATCAGTAAA
131 GAACTATAATCAGTTTCTAAAAAAACTTCATAATAGATTTCTTCATCAGATAATTCATCAGAAAA
* * * *
13848960 AAAATATTGAAGAAAATTGTCATCAAGTTTTTTTATCATTTTCTTGGCACTTTTCGCTTTGTTAA
196 AAAATATTGAAGAAAATTGTCATCAAGTTTTTTGATCAATTTATTGGCACTTTTCCCTTTGTTAA
* *
13849025 GGCAACTGTTTGCATAGTGATCTTCTTGATCACAAAGAAAGCATTGACAATTATGTTTAGAAGAT
261 GGCAACTGTTTGCATAGTGACCTTCTTGATCACAAAGAAAACATTGACAATTATGTTTAGAAGAT
* *
13849090 TTTTTCTTCTTTTTGACAGCAAATTTACCTTTTTTAGGTTTAAAATTTATAGTGGGTTTCCACTT
326 TTTTTCTTCTTTTTGACAACAAATTTACCATTTTTAGGTTTAAAATTTATAGTGGGTTTCCACTT
13849155 TTTCCAAAGATATTTTCGTTTTTTCTTAAAACGATTTTTCTTTGAAAAAGACTGTTTATTGCAAC
391 TTTCCAAAGATATTTTCGTTTTTTCTTAAAACGATTTTTCTTTGAAAAAGACTGTTTATTGCAAC
* * *
13849220 CAAATTCAAATTCATTTTTCAAAATCTTTGTACATTGTTTATACAAAAGTTTGGACTTTACTTGC
456 CAAATTCAAATTCATTTTTCAAAATCTTTGTACATTGTTTATACAAAAGTTTAGACTTTACCTGA
* * * *
13849285 TTCGTAGCTTTTTGCTTGAGGTAGTATTCTATGATTTTAGTCTGAACATAGCGTATTCTACATCC
521 TTCATAGCTTTTTGCTTGAGGCAGTATTCTATGATTTGAGTCTAAACATAGCGTATTCTACATCC
13849350 AAGAATATCATAGAGTTCGATACTGGGATTGGCAGCATGAACTGTTTTGAGTTTTAATTCTAAAT
586 AAGAATATCATAGAGTTCGATACTGGGATTGGCAGCATGAACTGTTTTGAGTTTTAATTCTAAAT
** *
13849415 AAACAGGATAATTTTGTGAACATAATTCATCCCATGATGAGGGAAGTTTTAGGAAATATTGTTGT
651 AAACAGGATAATTTTGTGAACATAATTCATCCCATGATGAAAGAAGTTTTAGAAAATATTGTTGT
*
13849480 AACCAAAACTTTGAATGTTTTTCATCCAATTTTTGATATTCAGAAATATATTTTTAAGAGAAATC
716 AACCAAAACTTTGAATGTTTTTCATCCAATTTTTGATATTCAGAAAGATATTTTTAAGAGAAATC
* *
13849545 ATCAAGATTTTGAATATCACATAATTTTAATTTTGATAAAATAAATTGAGCTTTTTGAGTGAGAT
781 ATCAAGATTTCGAATATCACATAATTTTAATTTTGATAAAATAAATTGAGCTTCTTGAGTGAGAT
13849610 CCAAAAATTCTGTACTACCATA
846 CCAAAAATTCTGTACTACCATA
* * *
13849632 CATAATATTTTTGAGTTTAACCATAC-TTCTCCTTCGGTAGTTGTTATACCTGTAGAAGATGTAA
1 CATAATATTTTTGAGTTTAACCATACATTCTCCTTCGATAGTTGTTATACCTATAAAAGATGTAA
*
13849696 CTGAAACATTGTCTTGGTTAGATTCAGTATTCAACATGAAAATAAAATCAGATTCATCGTCAGAA
66 CTGAAACATTGTCTTAGTTAGATTCAGTATTCAACATGAAAATAAAATCAGATTCATCGTCAGAA
* *
13849761 GAACTATAATTAGTTTCTAAAAAAACTTCATAATAGATTTCTTCATCAGATAATTCATTAGCAAA
131 GAACTATAATCAGTTTCTAAAAAAACTTCATAATAGATTTCTTCATCAGATAATTCATCAG-AAA
13849826 AAAAATA-TGAAGAAAATTGTCATCAAGTTTTTTGATCAATTTATTGGCACTTTTCCCTTTGTTA
195 AAAAATATTGAAGAAAATTGTCATCAAGTTTTTTGATCAATTTATTGGCACTTTTCCCTTTGTTA
* * * *
13849890 GGGCAACTGTTTGCATAGTGACCTTCTTGATTACAAAGAAAATATTTACAATTATGTTTAGAAGA
260 AGGCAACTGTTTGCATAGTGACCTTCTTGATCACAAAGAAAACATTGACAATTATGTTTAGAAGA
* *
13849955 TTTTTTCTTTTTTTTGACAACAAATTTACCATTTTTAGGTTTAAAATTTGTAGTGGGTTTCCACT
325 TTTTTTCTTCTTTTTGACAACAAATTTACCATTTTTAGGTTTAAAATTTATAGTGGGTTTCCACT
* * * * *
13850020 TTTTCCAAAGATATTTTCGTTTTTTCTTAAAATGATTTTTCTTTGAGAAAGATTGTTTATTGTAG
390 TTTTCCAAAGATATTTTCGTTTTTTCTTAAAACGATTTTTCTTTGAAAAAGACTGTTTATTGCAA
*
13850085 CCAAATTCAAATTCA-TTTTCTAAAATCTTTGTACATTGTTTATACGAAAGTTTAGACTTTACCT
455 CCAAATTCAAATTCATTTTTC-AAAATCTTTGTACATTGTTTATACAAAAGTTTAGACTTTACCT
* *
13850149 GATTCATAGCTTTTTGCTTGAGGCAGTATTCTGTGATTTGAGTCTAAACATAGTGTATTCTACAT
519 GATTCATAGCTTTTTGCTTGAGGCAGTATTCTATGATTTGAGTCTAAACATAGCGTATTCTACAT
* *
13850214 CCAAGAGTATCATAGAGTTCGATACTGGGATTGGTAGCATGAACTGTTTTGAGTTTTAATTCTAA
584 CCAAGAATATCATAGAGTTCGATACTGGGATTGGCAGCATGAACTGTTTTGAGTTTTAATTCTAA
** *
13850279 ATAAATGGGATAATTTTGTGAACATAATTCATCCCATGGTGAAAGAAGTTTTAGAAAATATTGTT
649 ATAAACAGGATAATTTTGTGAACATAATTCATCCCATGATGAAAGAAGTTTTAGAAAATATTGTT
* *
13850344 GTAACCAAAACTTTGAATGTTTTTCATCCAATTTTTGATATTCAGAAAGGTATTTTTTAGAGAAA
714 GTAACCAAAACTTTGAATGTTTTTCATCCAATTTTTGATATTCAGAAAGATATTTTTAAGAGAAA
*
13850409 TCATCAAGATTTCGAATATCACATAATTTTAATTTTGATAAAATAAATTGAGCTTCTTGAGTGGG
779 TCATCAAGATTTCGAATATCACATAATTTTAATTTTGATAAAATAAATTGAGCTTCTTGAGTGAG
* * * *
13850474 ATCTAGAGATTTTGTACTACCA
844 ATCCAAAAATTCTGTACTACCA
13850496 CAAAACTCAT
Statistics
Matches: 801, Mismatches: 61, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
865 5 0.01
866 761 0.95
867 35 0.04
ACGTcount: A:0.33, C:0.13, G:0.15, T:0.40
Consensus pattern (867 bp):
CATAATATTTTTGAGTTTAACCATACATTCTCCTTCGATAGTTGTTATACCTATAAAAGATGTAA
CTGAAACATTGTCTTAGTTAGATTCAGTATTCAACATGAAAATAAAATCAGATTCATCGTCAGAA
GAACTATAATCAGTTTCTAAAAAAACTTCATAATAGATTTCTTCATCAGATAATTCATCAGAAAA
AAAATATTGAAGAAAATTGTCATCAAGTTTTTTGATCAATTTATTGGCACTTTTCCCTTTGTTAA
GGCAACTGTTTGCATAGTGACCTTCTTGATCACAAAGAAAACATTGACAATTATGTTTAGAAGAT
TTTTTCTTCTTTTTGACAACAAATTTACCATTTTTAGGTTTAAAATTTATAGTGGGTTTCCACTT
TTTCCAAAGATATTTTCGTTTTTTCTTAAAACGATTTTTCTTTGAAAAAGACTGTTTATTGCAAC
CAAATTCAAATTCATTTTTCAAAATCTTTGTACATTGTTTATACAAAAGTTTAGACTTTACCTGA
TTCATAGCTTTTTGCTTGAGGCAGTATTCTATGATTTGAGTCTAAACATAGCGTATTCTACATCC
AAGAATATCATAGAGTTCGATACTGGGATTGGCAGCATGAACTGTTTTGAGTTTTAATTCTAAAT
AAACAGGATAATTTTGTGAACATAATTCATCCCATGATGAAAGAAGTTTTAGAAAATATTGTTGT
AACCAAAACTTTGAATGTTTTTCATCCAATTTTTGATATTCAGAAAGATATTTTTAAGAGAAATC
ATCAAGATTTCGAATATCACATAATTTTAATTTTGATAAAATAAATTGAGCTTCTTGAGTGAGAT
CCAAAAATTCTGTACTACCATA
Found at i:13863969 original size:26 final size:28
Alignment explanation
Indices: 13863921--13863974 Score: 76
Period size: 26 Copynumber: 2.0 Consensus size: 28
13863911 ATTCAACTTT
13863921 GAAAAAAATTCTATGTAACAAAAAATAA
1 GAAAAAAATTCTATGTAACAAAAAATAA
* *
13863949 GAAAATAA-TCTAT-TAATAAAAAATAA
1 GAAAAAAATTCTATGTAACAAAAAATAA
13863975 TTCCAGGAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 12 0.50
27 5 0.21
28 7 0.29
ACGTcount: A:0.65, C:0.06, G:0.06, T:0.24
Consensus pattern (28 bp):
GAAAAAAATTCTATGTAACAAAAAATAA
Found at i:13865454 original size:53 final size:54
Alignment explanation
Indices: 13865397--13865499 Score: 136
Period size: 54 Copynumber: 1.9 Consensus size: 54
13865387 TATCTTGTTA
*
13865397 TATATA-AAAAAAATGGAAATTAAAAAACCACTTTTAACAATTTTAATTTTTGC
1 TATATACAAAAAAATGAAAATTAAAAAACCACTTTTAACAATTTTAATTTTTGC
* * *** *
13865450 TATATACCAAAAAATTAAAATTAAAAAGTTACTTTTAACAATTTTCATTT
1 TATATACAAAAAAATGAAAATTAAAAAACCACTTTTAACAATTTTAATTT
13865500 ACGCTTACAC
Statistics
Matches: 42, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
53 6 0.14
54 36 0.86
ACGTcount: A:0.49, C:0.10, G:0.04, T:0.38
Consensus pattern (54 bp):
TATATACAAAAAAATGAAAATTAAAAAACCACTTTTAACAATTTTAATTTTTGC
Found at i:13872774 original size:15 final size:15
Alignment explanation
Indices: 13872756--13872787 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
13872746 TGTTGGCAAG
13872756 ATTATTGAAAACACC
1 ATTATTGAAAACACC
13872771 ATTATTGAAAACACC
1 ATTATTGAAAACACC
13872786 AT
1 AT
13872788 AAAGAATGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.47, C:0.19, G:0.06, T:0.28
Consensus pattern (15 bp):
ATTATTGAAAACACC
Found at i:13875520 original size:18 final size:18
Alignment explanation
Indices: 13875492--13875535 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
13875482 GTGAAGAAAC
*
13875492 CAACCAAACAAAAAAATA
1 CAACAAAACAAAAAAATA
* *
13875510 CAAGAAAACAAAACAATA
1 CAACAAAACAAAAAAATA
13875528 CAACAAAA
1 CAACAAAA
13875536 AGATTATAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.73, C:0.20, G:0.02, T:0.05
Consensus pattern (18 bp):
CAACAAAACAAAAAAATA
Found at i:13876826 original size:15 final size:17
Alignment explanation
Indices: 13876792--13876831 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
13876782 TTAGAGTATT
*
13876792 TAAAAAATTTTCAAATA
1 TAAAAAATTCTCAAATA
13876809 TAAAAAATTCT-AAA-A
1 TAAAAAATTCTCAAATA
13876824 TAAAAAAT
1 TAAAAAAT
13876832 CATTTTGAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 9 0.41
16 3 0.14
17 10 0.45
ACGTcount: A:0.65, C:0.05, G:0.00, T:0.30
Consensus pattern (17 bp):
TAAAAAATTCTCAAATA
Found at i:13883900 original size:59 final size:57
Alignment explanation
Indices: 13883837--13884115 Score: 373
Period size: 59 Copynumber: 4.7 Consensus size: 57
13883827 TCTTGTGCAG
13883837 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCTTTTTTTTGAAAATTTATCTTT-AA
1 GGAAAATTGATACTTTCAACTTTTCC-CAAAAAT-TTTTTTTTGAAAATTTAT-TTTCAA
* * *
13883896 GGAAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTTGGAAACTTTTATTTTCAA
1 GGAAAATTGATACTTTCAAC-TTTTCCCAAAAATTTTTTTTTGAAA-ATTTATTTTCAA
13883955 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCTTTTTTTTGAAAATTTATCTTT-AA
1 GGAAAATTGATACTTTCAACTTTTCC-CAAAAAT-TTTTTTTTGAAAATTTAT-TTTCAA
* * * *
13884014 GAAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAACTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTT-CCCAAAAATTTTTTTTTGAAAATTT-ATTTTCAA
13884073 GGAAAATTGATACTTTCAACTTTTCCCAAAAAATATTTTTTTT
1 GGAAAATTGATACTTTCAACTTTTCCC-AAAAAT-TTTTTTTT
13884116 ATTTTTATTT
Statistics
Matches: 196, Mismatches: 13, Indels: 21
0.85 0.06 0.09
Matches are distributed among these distances:
58 38 0.19
59 131 0.67
60 27 0.14
ACGTcount: A:0.34, C:0.14, G:0.08, T:0.44
Consensus pattern (57 bp):
GGAAAATTGATACTTTCAACTTTTCCCAAAAATTTTTTTTTGAAAATTTATTTTCAA
Found at i:13883974 original size:118 final size:118
Alignment explanation
Indices: 13883837--13884115 Score: 506
Period size: 118 Copynumber: 2.4 Consensus size: 118
13883827 TCTTGTGCAG
*
13883837 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCTTTTTTTTGAAAATTTATCTTTAAGGAAAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCTTTTTTTTGAAAATTTATCTTTAAGAAAAA
* *
13883902 TTGATACTTTCAACTTTTTCCCAAAAATATTTTTTGGAAACTTTTATTTTCAA
66 TTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAACTTTGATTTTCAA
13883955 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCTTTTTTTTGAAAATTTATCTTTAAGAAAAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCTTTTTTTTGAAAATTTATCTTTAAGAAAAA
13884020 TTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAACTTTGATTTTCAA
66 TTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAACTTTGATTTTCAA
*
13884073 GGAAAATTGATACTTTCAACTTTTCC-CAAAAAATATTTTTTTT
1 GGAAAATTGATACTTTCAACTTTTCCTC-AAAAATCTTTTTTTT
13884116 ATTTTTATTT
Statistics
Matches: 156, Mismatches: 4, Indels: 2
0.96 0.02 0.01
Matches are distributed among these distances:
117 1 0.01
118 155 0.99
ACGTcount: A:0.34, C:0.14, G:0.08, T:0.44
Consensus pattern (118 bp):
GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCTTTTTTTTGAAAATTTATCTTTAAGAAAAA
TTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAACTTTGATTTTCAA
Found at i:13884189 original size:21 final size:22
Alignment explanation
Indices: 13884153--13884194 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
13884143 AAAGCAAAAT
13884153 AAAAGTGAAAAAAAAAATAAAG
1 AAAAGTGAAAAAAAAAATAAAG
*
13884175 AAAAGT-AAAACAAAAATAAA
1 AAAAGTGAAAAAAAAAATAAA
13884195 ATAAAGATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.68
22 6 0.32
ACGTcount: A:0.79, C:0.02, G:0.10, T:0.10
Consensus pattern (22 bp):
AAAAGTGAAAAAAAAAATAAAG
Found at i:13884827 original size:24 final size:24
Alignment explanation
Indices: 13884798--13884846 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
13884788 CCGAAATCTG
* *
13884798 AAAATTTCCAGAAAT-TCTCAAAAA
1 AAAATTACCAAAAATCT-TCAAAAA
13884822 AAAATTACCAAAAATCTTCAAAAA
1 AAAATTACCAAAAATCTTCAAAAA
13884846 A
1 A
13884847 TTTTTGCTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 21 0.95
25 1 0.05
ACGTcount: A:0.59, C:0.16, G:0.02, T:0.22
Consensus pattern (24 bp):
AAAATTACCAAAAATCTTCAAAAA
Found at i:13885121 original size:18 final size:19
Alignment explanation
Indices: 13885098--13885151 Score: 53
Period size: 18 Copynumber: 3.0 Consensus size: 19
13885088 TTCTAGTCAG
13885098 ATAAATCAAA-AAAATAAA
1 ATAAATCAAACAAAATAAA
* *
13885116 ATAAAT-AAATAAAA-GAA
1 ATAAATCAAACAAAATAAA
13885133 A-AAATCAAACGAAAATAAA
1 ATAAATCAAAC-AAAATAAA
13885152 TCAGATAAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
16 4 0.14
17 9 0.31
18 14 0.48
19 2 0.07
ACGTcount: A:0.76, C:0.06, G:0.04, T:0.15
Consensus pattern (19 bp):
ATAAATCAAACAAAATAAA
Found at i:13885170 original size:12 final size:12
Alignment explanation
Indices: 13885153--13885193 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
13885143 GAAAATAAAT
13885153 CAGATAAATTAA
1 CAGATAAATTAA
13885165 CAGATAAATTAA
1 CAGATAAATTAA
13885177 -A-ATTAAA-TAA
1 CAGA-TAAATTAA
13885187 CAGATAA
1 CAGATAA
13885194 TTACATAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
10 4 0.15
11 9 0.35
12 13 0.50
ACGTcount: A:0.61, C:0.07, G:0.07, T:0.24
Consensus pattern (12 bp):
CAGATAAATTAA
Found at i:13885253 original size:20 final size:23
Alignment explanation
Indices: 13885228--13885272 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
13885218 AAAAGAAAAA
13885228 AATAAA-ATA-ATA-ATAATAAT
1 AATAAAGATATATACATAATAAT
*
13885248 AATAAAGATATATACATATTAAT
1 AATAAAGATATATACATAATAAT
13885271 AA
1 AA
13885273 ATACATAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 6 0.29
21 3 0.14
22 3 0.14
23 9 0.43
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.31
Consensus pattern (23 bp):
AATAAAGATATATACATAATAAT
Found at i:13885352 original size:6 final size:6
Alignment explanation
Indices: 13885341--13885415 Score: 73
Period size: 6 Copynumber: 12.0 Consensus size: 6
13885331 TATATAAAAT
* *
13885341 AATAAA ATTAAA AATAAA AAT-AA AATAAAA AATGTAA AATACAA AATAAA
1 AATAAA AATAAA AATAAA AATAAA AAT-AAA AAT-AAA AATA-AA AATAAA
13885391 AATAAA TTAA-AAA AATAAA AATAAA
1 AATAAA --AATAAA AATAAA AATAAA
13885416 TGAAGAGAAA
Statistics
Matches: 58, Mismatches: 5, Indels: 12
0.77 0.07 0.16
Matches are distributed among these distances:
5 7 0.12
6 30 0.52
7 19 0.33
8 2 0.03
ACGTcount: A:0.77, C:0.01, G:0.01, T:0.20
Consensus pattern (6 bp):
AATAAA
Found at i:13885363 original size:26 final size:26
Alignment explanation
Indices: 13885334--13885415 Score: 93
Period size: 26 Copynumber: 3.2 Consensus size: 26
13885324 ATATACATAT
13885334 ATAAAATAATAAAATTAAAAATAAAA
1 ATAAAATAATAAAATTAAAAATAAAA
13885360 ATAAAATAA-AAAATGT-AAAATACAAA
1 ATAAAATAATAAAAT-TAAAAATA-AAA
13885386 AT-AAA-AAT-AAATTAAAAAAATAAAA
1 ATAAAATAATAAAATT--AAAAATAAAA
13885411 ATAAA
1 ATAAA
13885416 TGAAGAGAAA
Statistics
Matches: 49, Mismatches: 0, Indels: 14
0.78 0.00 0.22
Matches are distributed among these distances:
23 1 0.02
24 6 0.12
25 19 0.39
26 23 0.47
ACGTcount: A:0.77, C:0.01, G:0.01, T:0.21
Consensus pattern (26 bp):
ATAAAATAATAAAATTAAAAATAAAA
Found at i:13885412 original size:32 final size:31
Alignment explanation
Indices: 13885334--13885415 Score: 103
Period size: 32 Copynumber: 2.6 Consensus size: 31
13885324 ATATACATAT
* *
13885334 ATAAAATAATAAAATTAAAAATAAAAATAAA
1 ATAAAAAAATAAAAATAAAAATAAAAATAAA
*
13885365 AT-AAAAAATGTAAAATACAAAATAAAAATAAA
1 ATAAAAAAAT-AAAAATA-AAAATAAAAATAAA
*
13885397 TTAAAAAAATAAAAATAAA
1 ATAAAAAAATAAAAATAAA
13885416 TGAAGAGAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
30 6 0.14
31 9 0.21
32 21 0.49
33 7 0.16
ACGTcount: A:0.77, C:0.01, G:0.01, T:0.21
Consensus pattern (31 bp):
ATAAAAAAATAAAAATAAAAATAAAAATAAA
Found at i:13885784 original size:41 final size:41
Alignment explanation
Indices: 13885646--13886123 Score: 620
Period size: 41 Copynumber: 11.6 Consensus size: 41
13885636 TTGATCAAAA
* * *
13885646 CTCCTTTAAACAGAGG-ATCAACGACTTTGAGAAA-CATAAATGG
1 CTCCTCTAAACAGAGGCA-CCACGACTTTG-GAAAGTA-AAAT-G
* * * * * *
13885689 CTCCTCTAATCAGAGGCTCAACGACTTTGAAAAAATAAATTG
1 CTCCTCTAAACAGAGGCACCACGACTTTG-GAAAGTAAAATG
*
13885731 CTCCTCTAAACAGAGGCACCACGACTTTAGAAAGTAAAATG
1 CTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAAATG
* * *
13885772 CTCCTCTAAACAGAGGCACCATGACTTTGAAAAGTAAATTG
1 CTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAAATG
*
13885813 CTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAAATA
1 CTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAAATG
* * * * *
13885854 CTCCTCTAAACAAAGGCATCACGATTTTGGAAAATAAATTG
1 CTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAAATG
* *
13885895 CTCCTCTAAAC-GAGACACCACGACTTTGAAAAGTAAAATG
1 CTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAAATG
* *
13885935 CTCCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATTG
1 CTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAAATG
* * * *
13885976 CTCCTCTAAACAGAGGAACCACAATTTTGAAAAGTAAAATG
1 CTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAAATG
*
13886017 CTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAAATG
1 CTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAAATG
* *
13886058 CTCCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATTG
1 CTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAAATG
13886099 CTCCTCTAAACAGAGGCACCACGAC
1 CTCCTCTAAACAGAGGCACCACGAC
13886124 CTTACCACGA
Statistics
Matches: 382, Mismatches: 50, Indels: 8
0.87 0.11 0.02
Matches are distributed among these distances:
40 33 0.09
41 290 0.76
42 26 0.07
43 32 0.08
44 1 0.00
ACGTcount: A:0.38, C:0.23, G:0.16, T:0.22
Consensus pattern (41 bp):
CTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAAATG
Found at i:13886089 original size:204 final size:206
Alignment explanation
Indices: 13885645--13886123 Score: 712
Period size: 204 Copynumber: 2.3 Consensus size: 206
13885635 TTTGATCAAA
* * * * * *
13885645 ACTCCTTTAAACAGAGG-ATCAACGACTTTGAGAAACATAAATGGCTCCTCTAATCAGAGGCTCA
1 ACTCCTCTAAACAGAGGCA-CCACGACTTTG-GAAA-ATAAATTGCTCCTCTAAACAGAGGCACC
* *
13885709 ACGACTTTGAAAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTTAGAAAGTAAAATGCT
63 ACGACTTTGAAAAAATAAAATGCTCCTCTAAACAGAGGCACCACGACTTTAGAAAATAAAATGCT
* ** *
13885774 CCTCTAAACAGAGGCACCATGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACT
128 CCTCTAAACAGAGGAACCACAACTTTGAAAAGTAAAATGCTCCTCTAAACAGAGGCACCACGACT
*
13885839 TTGGAAAGTAAAAT
193 TTGAAAAGTAAAAT
* * * *
13885853 ACTCCTCTAAACAAAGGCATCACGATTTTGGAAAATAAATTGCTCCTCTAAAC-GAGACACCACG
1 ACTCCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATTGCTCCTCTAAACAGAGGCACCACG
* * *
13885917 ACTTTG-AAAAGTAAAATGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATTGCTCCT
66 ACTTTGAAAAAATAAAATGCTCCTCTAAACAGAGGCACCACGACTTTAGAAAATAAAATGCTCCT
*
13885981 CTAAACAGAGGAACCACAATTTTGAAAAGTAAAATGCTCCTCTAAACAGAGGCACCACGACTTTG
131 CTAAACAGAGGAACCACAACTTTGAAAAGTAAAATGCTCCTCTAAACAGAGGCACCACGACTTTG
13886046 AAAAGTAAAAT
196 AAAAGTAAAAT
*
13886057 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATTGCTCCTCTAAACAGAGGCACCACG
1 ACTCCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATTGCTCCTCTAAACAGAGGCACCACG
13886122 AC
66 AC
13886124 CTTACCACGA
Statistics
Matches: 243, Mismatches: 26, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
204 172 0.71
205 26 0.11
206 17 0.07
207 4 0.02
208 23 0.09
209 1 0.00
ACGTcount: A:0.39, C:0.23, G:0.16, T:0.22
Consensus pattern (206 bp):
ACTCCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATTGCTCCTCTAAACAGAGGCACCACG
ACTTTGAAAAAATAAAATGCTCCTCTAAACAGAGGCACCACGACTTTAGAAAATAAAATGCTCCT
CTAAACAGAGGAACCACAACTTTGAAAAGTAAAATGCTCCTCTAAACAGAGGCACCACGACTTTG
AAAAGTAAAAT
Found at i:13886473 original size:43 final size:42
Alignment explanation
Indices: 13886421--13886502 Score: 112
Period size: 43 Copynumber: 1.9 Consensus size: 42
13886411 TTTGGCAAAC
* * *
13886421 TTGGAATTCATATCC-AAAAGTCTAAAGCTTTTCGTTTGAATT
1 TTGGAATTCACATCCAAAAATTC-AAAGCTTTTCATTTGAATT
13886463 TTGGAAATTCACATCCAAAAATTCAAAGCTTTTCATTTGA
1 TTGG-AATTCACATCCAAAAATTCAAAGCTTTTCATTTGA
13886503 GTTCAAAGGC
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
42 4 0.11
43 25 0.71
44 6 0.17
ACGTcount: A:0.34, C:0.16, G:0.12, T:0.38
Consensus pattern (42 bp):
TTGGAATTCACATCCAAAAATTCAAAGCTTTTCATTTGAATT
Found at i:13886735 original size:22 final size:21
Alignment explanation
Indices: 13886686--13886726 Score: 73
Period size: 22 Copynumber: 1.9 Consensus size: 21
13886676 GGTTTCACTC
13886686 CTCAAAGATTCTCATTTTGAAA
1 CTCAAAGATTCTCA-TTTGAAA
13886708 CTCAAAGATTCTCATTTGA
1 CTCAAAGATTCTCATTTGA
13886727 GTTCTCAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.34, C:0.20, G:0.10, T:0.37
Consensus pattern (21 bp):
CTCAAAGATTCTCATTTGAAA
Found at i:13887858 original size:26 final size:26
Alignment explanation
Indices: 13887802--13887858 Score: 66
Period size: 26 Copynumber: 2.2 Consensus size: 26
13887792 TTGAATCTCT
13887802 TTTTTTTATTTTCTCATTTTTTCCTTC
1 TTTTTTTATTTTCTCATTTTTT-CTTC
13887829 -TTTTTT-TTTTCATCATTTTTT-TTC
1 TTTTTTTATTTTC-TCATTTTTTCTTC
*
13887853 ATTTTT
1 TTTTTT
13887859 CATCTATTGT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
24 3 0.11
25 10 0.36
26 15 0.54
ACGTcount: A:0.09, C:0.14, G:0.00, T:0.77
Consensus pattern (26 bp):
TTTTTTTATTTTCTCATTTTTTCTTC
Done.