Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19866354
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 74000 characters in sequence are not A, C, G, or T
File 61 of 100
Found at i:14318496 original size:179 final size:178
Alignment explanation
Indices: 14318167--14318599 Score: 417
Period size: 179 Copynumber: 2.4 Consensus size: 178
14318157 GCATCTCGAT
* * * * * *
14318167 GGTGTTTGAGGTAACATC-CTGGGGCAACAATGGCTTAGCATCTGCCATCGATAGTGGTGGATGG
1 GGTGTTCGAGGTAACATCTC-GAGGCAACAATGGC-TAGCATCTACCATCGATGGTGGTGGACGC
* ** * * * ** *
14318231 GATTAGCCACACTAGCCAAGGACCAAAGAGGTGTTCAGAGGATCAAGCGCTAGGCACCTTCGATG
64 GATTGGCTGCACTAGCCAAAGACCAAAGAGATGTTCAGAGGATCAAGCGCCAGGCACCCGCCATG
* ***
14318296 GAAGAGCTCAAGGCCACATCGGGCA-TTGAGGTGCCAGCACCCACTAGGG-A
129 GAAGAGCTCAAGGCAACATCGGGCACCAAAGG-GCCAGCACCCACT-GGGAA
* * **
14318346 GGTGTTGGAGGTAACATCTCGAGGCAACAATAGGCTAGCATCTACCATTGATGGTGGTGGACATG
1 GGTGTTCGAGGTAACATCTCGAGGCAACAAT-GGCTAGCATCTACCATCGATGGTGGTGGACGCG
** * * *
14318411 ATTGGCTGCACTAGCCAAAGACCAAAGAGATGTTTGGGGGATTAAGCTCCAGGCACCCGCCA-GA
65 ATTGGCTGCACTAGCCAAAGACCAAAGAGATGTTCAGAGGATCAAGCGCCAGGCACCCGCCATG-
* * * *
14318475 GAGGAGCTTAAGGCAACATCGGGCACCAAAGGGCTAGCACCTACTGGGAA
129 GAAGAGCTCAAGGCAACATCGGGCACCAAAGGGCCAGCACCCACTGGGAA
* * * * * * *
14318525 GGTGTTCGAGGTAGCATTTTGAGGCAACAACGGGCTAGCATCTATCGTCGATGGTGTTGGACGCG
1 GGTGTTCGAGGTAACATCTCGAGGCAACAA-TGGCTAGCATCTACCATCGATGGTGGTGGACGCG
14318590 ATTGG-TGCAC
65 ATTGGCTGCAC
14318600 CATCCAAGGG
Statistics
Matches: 207, Mismatches: 41, Indels: 13
0.79 0.16 0.05
Matches are distributed among these distances:
178 9 0.04
179 191 0.92
180 7 0.03
ACGTcount: A:0.27, C:0.22, G:0.32, T:0.20
Consensus pattern (178 bp):
GGTGTTCGAGGTAACATCTCGAGGCAACAATGGCTAGCATCTACCATCGATGGTGGTGGACGCGA
TTGGCTGCACTAGCCAAAGACCAAAGAGATGTTCAGAGGATCAAGCGCCAGGCACCCGCCATGGA
AGAGCTCAAGGCAACATCGGGCACCAAAGGGCCAGCACCCACTGGGAA
Found at i:14320538 original size:296 final size:295
Alignment explanation
Indices: 14319756--14320547 Score: 739
Period size: 296 Copynumber: 2.7 Consensus size: 295
14319746 ATGGTAGATG
* *
14319756 TGATTGGTCGCACCAGCTAAGGACCAAAGAGGTGTTCGAGGGATCAAGCAT-TAGGCACCCACCA
1 TGATTGGCCGCACTAGCTAAGGACCAAAGAGGTGTTCGAGGGATCAAGC-TCTAGGCACCCACCA
* * * *
14319820 AGGAAGAGCTTGAGGTAATATC-AGGCA-CTGAGGGGCTAGCACCTGCCAGAA-AGGTGTCTAAG
65 AGGAAGAGCTTGAGGCAACATCGA-GCATC-GAAGGGCTAGCACCTG-CAAAAGAGGTGTCTAAG
* * * *
14319882 GGAACATCTC-GAGGCAACAACAGGCCAGCATCTATTGTCGATGGTGTTGGACTTGATTGGCCAC
127 GCAACATCTCAG-GGCAACAACAGGCCAGCATCTACTATCGATGGTGTTGGACATGATTGGCCAC
* ** * * * * *
14319946 -A--CAAGGGGCAGATGCTATTAATGAGCCAGCATCCTGATGGTGTCTGAGGTAACATCCTAGGG
191 TAGCCAAGGGCCAGACACTATCAATGAGCAAGCATCCTGATGCTGTCTGACGTAACATCCCAGGG
* * ** * **
14320008 TAATAATGGGCTAGAATCTGCCATCGATTGTCATGGATGA
256 CAACAATGGGCTAGAATCCACCATCGATGGTCATGGAACA
* * * * * * * * *
14320048 -GATTGGCTGCAGTAGCTAATGACCAAAAAGGGGTTCGAGGGATCAACCGCCAAGCACCCACCAA
1 TGATTGGCCGCACTAGCTAAGGACCAAAGAGGTGTTCGAGGGATCAAGCTCTAGGCACCCACCAA
* * ** *
14320112 GGAAGAGCTTGATGCAACATCGAGCATC-AAGGGGTCAGCACCTGCCTAGGAGGTGTGC-AAGGC
66 GGAAGAGCTTGAGGCAACATCGAGCATCGAAGGGCT-AGCACCTGCAAAAGAGGTGT-CTAAGGC
* * * * * * * * ** *
14320175 AACATCTCAGGGTAATAATAGGCTAGCATCTGCCATCAATGATGTTGGACACAATTGGTTACACT
129 AACATCTCAGGGCAACAACAGGCCAGCATCTACTATCGATGGTGTTGGACATGATTGG--CCACT
* * *
14320240 AGCCAAGGGCCTGACACTATCAATGGGCAAGCAT-CTCGATGCTGTCTGACGTAACATCCCGGGG
192 AGCCAAGGGCCAGACACTATCAATGAGCAAGCATCCT-GATGCTGTCTGACGTAACATCCCAGGG
* * **
14320304 CAACAATGGGTTAGCATCCACCA-CTGATGGTGGT-GAACA
256 CAACAATGGGCTAGAATCCACCATC-GATGGTCATGGAACA
* * **
14320343 TGATTGGCCACACTAGCCAAGGACCAAAGAGGTGTTTAAGGGATCAAGCTCTAGGCACCCACCAA
1 TGATTGGCCGCACTAGCTAAGGACCAAAGAGGTGTTCGAGGGATCAAGCTCTAGGCACCCACCAA
** * * *
14320408 TAAAGAGCTTGAGGCAACATCGAGCATCGAAGGGCTAGCACTTGCAAAAGAGGTGTTTGAGGCAA
66 GGAAGAGCTTGAGGCAACATCGAGCATCGAAGGGCTAGCACCTGCAAAAGAGGTGTCTAAGGCAA
* **
14320473 CATCCCAGGGCAACAACAGGCCAATATCTACTATCGATGGTGTTGGACATGATTGGCGGCACTAG
131 CATCTCAGGGCAACAACAGGCCAGCATCTACTATCGATGGTGTTGGACATGATTGGC--CACTAG
*
14320538 CTAAGGGCCA
194 CCAAGGGCCA
14320548 AAAGCTATTG
Statistics
Matches: 386, Mismatches: 95, Indels: 34
0.75 0.18 0.07
Matches are distributed among these distances:
290 7 0.02
291 134 0.35
292 4 0.01
293 3 0.01
294 1 0.00
295 6 0.02
296 225 0.58
297 6 0.02
ACGTcount: A:0.30, C:0.22, G:0.28, T:0.20
Consensus pattern (295 bp):
TGATTGGCCGCACTAGCTAAGGACCAAAGAGGTGTTCGAGGGATCAAGCTCTAGGCACCCACCAA
GGAAGAGCTTGAGGCAACATCGAGCATCGAAGGGCTAGCACCTGCAAAAGAGGTGTCTAAGGCAA
CATCTCAGGGCAACAACAGGCCAGCATCTACTATCGATGGTGTTGGACATGATTGGCCACTAGCC
AAGGGCCAGACACTATCAATGAGCAAGCATCCTGATGCTGTCTGACGTAACATCCCAGGGCAACA
ATGGGCTAGAATCCACCATCGATGGTCATGGAACA
Found at i:14320876 original size:296 final size:296
Alignment explanation
Indices: 14320344--14320970 Score: 654
Period size: 296 Copynumber: 2.1 Consensus size: 296
14320334 TGGTGAACAT
* * * * *
14320344 GATTGGCCACACTAGCCAAGGACCAAAGAGGTGTTTAAGGGATCAAGCTCTAGGCACCCACCAAT
1 GATTAGCCACACCAGCCAAGGACCAAAGAGGTGTTTAAGGGATCAAGCACCAGGCACCCACCAAG
* * * * ***
14320409 AAAGAGCTTGAGGCAACATCGAGCATCGAAGGGCTAGCACTTGCAAAAGAGGTGTTTGAGGCAAC
66 AAAGAGCTAGAGGCAACATCAAGCACCGAAGGGCCAGCACCAACAAAAGAGGTGTTTGAGGCAAC
* * ** * * *
14320474 ATCCCAGGGCAACAACAGGCCAATATCTACTATCGATGGTGTTGGACATGATTGGCGGCACTAGC
131 ATCCCAGGGCAACAACAGGCCAACATCTACTACCGACAGTGTTGGACATGATTAGCGACACCAGC
* * ** * *
14320539 TAAGGGCCAAAAGCTATTGATGGGCTAATCTCTTAATGGTGTCCAAGGCAACATCTAAAGGTAAC
196 TAAGGGCCAAAAGCAATTAACAGGCCAATCTCCTAATGGTGTCCAAGGCAACATCTAAAGGTAAC
* * * *
14320604 AACGGGATAGCATCTACCATCGATGGTGGTGGATGC
261 AACGAGACAGCATCTACCACCAATGGTGGTGGATGC
* * * *
14320640 GATT-GACCATACCAGCCAAGGACCAAAGAGGTGTTTCAGTGATTAAGCACCAGGCACCCACCAA
1 GATTAG-CCACACCAGCCAAGGACCAAAGAGGTGTTTAAGGGATCAAGCACCAGGCACCCACCAA
* * * * *
14320704 GGAAGAGCTAGAGGCAATATCAAGCACCGAGGGGCCAGCACCAACTAAGGAGGTGTTTGAGGCAA
65 GAAAGAGCTAGAGGCAACATCAAGCACCGAAGGGCCAGCACCAACAAAAGAGGTGTTTGAGGCAA
* ** * * *
14320769 CATCTC-GAGGCAACAATGGGCCAACATCTGGC-ACCGACAGTGTTGGACTTGATTAGCTACACC
130 CATCCCAG-GGCAACAACAGGCCAACATCT-ACTACCGACAGTGTTGGACATGATTAGCGACACC
* ** * * *
14320832 AGCTAAGGGCCAAACA-CAATTAACAGGCCAA-CATCCTGATGGTGTCTGAGGTAACATCTTAGG
193 AGCTAAGGGCCAAA-AGCAATTAACAGGCCAATC-TCCTAATGGTGTCCAAGGCAACATCTAAAG
* * * *
14320895 GTAACAACTAGCCAGCATCTACTACCAATGGTGGTGGATGT
256 GTAACAACGAGACAGCATCTACCACCAATGGTGGTGGATGC
* *
14320936 GATTAGCCACACTAGCTTAA-GACCAAAGAGGTGTT
1 GATTAGCCACACCAGC-CAAGGACCAAAGAGGTGTT
14320971 CGGGGGTTCA
Statistics
Matches: 268, Mismatches: 56, Indels: 14
0.79 0.17 0.04
Matches are distributed among these distances:
295 3 0.01
296 260 0.97
297 5 0.02
ACGTcount: A:0.32, C:0.23, G:0.26, T:0.19
Consensus pattern (296 bp):
GATTAGCCACACCAGCCAAGGACCAAAGAGGTGTTTAAGGGATCAAGCACCAGGCACCCACCAAG
AAAGAGCTAGAGGCAACATCAAGCACCGAAGGGCCAGCACCAACAAAAGAGGTGTTTGAGGCAAC
ATCCCAGGGCAACAACAGGCCAACATCTACTACCGACAGTGTTGGACATGATTAGCGACACCAGC
TAAGGGCCAAAAGCAATTAACAGGCCAATCTCCTAATGGTGTCCAAGGCAACATCTAAAGGTAAC
AACGAGACAGCATCTACCACCAATGGTGGTGGATGC
Found at i:14321098 original size:92 final size:92
Alignment explanation
Indices: 14320941--14321122 Score: 258
Period size: 92 Copynumber: 2.0 Consensus size: 92
14320931 GATGTGATTA
* * *
14320941 GCCACACTAGCTTAAGACCAAAGAGGTGTTCGGGGGTTCAAGTGCCAAGCACCTACCAAAGAGGA
1 GCCACACTAGCTAAAGACCAAAGAGGTGTTCAGGGGATCAAGTGCCAAGCACCTACCAAAGAGGA
* *
14321006 GCTCTAGGCAACATCGGGCATCGAGGG
66 GCTCGAGGCAACATCAGGCATCGAGGG
* * * **
14321033 GCCACACTAGCTAAAGATCAAAGTGGTGTTCAGGGGATCAAGTGCCAAGCA-CTCGCCATGGAGG
1 GCCACACTAGCTAAAGACCAAAGAGGTGTTCAGGGGATCAAGTGCCAAGCACCT-ACCAAAGAGG
14321097 AGCTCGAGGCAACATCAGGCATCGAG
65 AGCTCGAGGCAACATCAGGCATCGAG
14321123 AGGTCAGCAC
Statistics
Matches: 79, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
91 2 0.03
92 77 0.97
ACGTcount: A:0.30, C:0.25, G:0.30, T:0.15
Consensus pattern (92 bp):
GCCACACTAGCTAAAGACCAAAGAGGTGTTCAGGGGATCAAGTGCCAAGCACCTACCAAAGAGGA
GCTCGAGGCAACATCAGGCATCGAGGG
Found at i:14322881 original size:18 final size:18
Alignment explanation
Indices: 14322854--14322888 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
14322844 ACCTAGATAT
*
14322854 AGGCAGTAATGATTAGGC
1 AGGCACTAATGATTAGGC
14322872 AGGCACTAATGATTAGG
1 AGGCACTAATGATTAGG
14322889 TTTAAGAGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.34, C:0.11, G:0.31, T:0.23
Consensus pattern (18 bp):
AGGCACTAATGATTAGGC
Found at i:14325696 original size:295 final size:292
Alignment explanation
Indices: 14324950--14327131 Score: 1242
Period size: 296 Copynumber: 7.4 Consensus size: 292
14324940 TTTTTGGCAA
* * * * * * * * *
14324950 GTGCTAGCCCCTCAATGCCTGATGTTACCTCAAGCTCCTCCTTGGTAGGTGCCTGGCACTTAATC
1 GTGCTGGCCCTTCGATGCCTGATGTTGCCTCCAGCTCCTCCTTGGTGGGTGCCTAGCGCTTGATC
* ** * ** * ** *
14325015 CCCCGAACACCTCTTTGGTCCTTGATTGGTG-TGACCAATCATGTTCACCACCATCGGTGGCAAA
66 CCTCGAACACCTCTTTGGTCCTTGGCTGGTGCAG-CCAATCACATCCACCACCATCAATGGCAGA
* * * * * *
14325079 AGCTGGCCTATTGTTGCCCTA-AGATGTTACCTC-GAACACCAT-TAGAATGCTAGCCCATCAAT
130 TGCTAGCCCATTGTTGCCC-AGGGATGTTACCTCAG-ACATCATCAAG-ATGCTAG-CCATCAA-
** * * ** * * ** *
14325141 AGCATCTGGCCTTTAACTGGTGTAACCATTCACGTAC-AATGCCATC-AGT-GATAGATGCTAGC
190 AGTGTCTAGCCCTTGGCTGGTGTAACCAATCA-AT-CTAACACCATCGA-TAGCT-GATGCTAG-
* * * *
14325203 CCATTGTTGCC-CTGAGAAGTTACCTTAAACACCTCCCTGGTGG
250 CCATTGTTGCCTC-AAGAAGTTACCTTAGACACCTCTCTAGTGG
* ** * *
14325246 GTGCTGGCCCCTCGATGCCTGATGTTGCCTCCAGCTTTTCCTTGGTGGGTGCCTGGCGTTTGATC
1 GTGCTGGCCCTTCGATGCCTGATGTTGCCTCCAGCTCCTCCTTGGTGGGTGCCTAGCGCTTGATC
* * * * * ** * *
14325311 CATCGAACACCTCTTTGGACCTTGGCTGGTGCAACTAATGATGTCCACCACCATCGACGGCAGAT
66 CCTCGAACACCTCTTTGGTCCTTGGCTGGTGCAGCCAATCACATCCACCACCATCAATGGCAGAT
* * * * ** * *
14325376 ACTGGCCCACTGTTGCCCTGGGATGTTACCTC-GAACAGAATTAAGATGCTAGCCTATCAAAATC
131 GCTAGCCCATTGTTGCCCAGGGATGTTACCTCAG-ACATCATCAAGATGCTAGCC-ATCAAAGT-
* * * *
14325440 GTCTAGCCCTTGGCTGGTGTAACCAATCAAGTCTAACACCATTGGTGGCTGATGCTGGCTCATTG
193 GTCTAGCCCTTGGCTGGTGTAACCAATCAA-TCTAACACCATCGATAGCTGATGCTAGC-CATTG
* *
14325505 TTGCCTCAAGAAGTTACCTTAGACACTTCTCTAGTAG
256 TTGCCTCAAGAAGTTACCTTAGACACCTCTCTAGTGG
* * * *
14325542 GTGATGGCCTTTCGATGCCTGATGGTT-CCT-TAGCTCCTCCTTGGTGGGTGCCTAGTGCTTGAT
1 GTGCTGGCCCTTCGATGCCTGAT-GTTGCCTCCAGCTCCTCCTTGGTGGGTGCCTAGCGCTTGAT
* * * * *
14325605 CCC-CTAAACACCTTTTTAGTCCTTGGCTGATGC-GACCAATCGCATCCACCACCATCAATGGCA
65 CCCTC-GAACACCTCTTTGGTCCTTGGCTGGTGCAG-CCAATCACATCCACCACCATCAATGGCA
* * ** * * * *
14325668 GATGTTGGCCCATTGTTGCCCAGGGATGTTACCTCAGACATCATCGGGATGATGGCTTATCGATA
128 GATGCTAGCCCATTGTTGCCCAGGGATGTTACCTCAGACATCATCAAGATGCTAGC-CATC-AAA
* * * * * * ** * *
14325733 GTGTCTGGCCCTTGCCTAGTGTAGCCTATCACATCCAGTAGCATCGATAG-TAGATACTAGCCTA
191 GTGTCTAGCCCTTGGCTGGTGTAACCAATCA-ATCTAACACCATCGATAGCT-GATGCTAGCC-A
* * * * * * *
14325797 TTGTTACCCCAAGATGTTGCCTTGGACACCTCTTTGGTGG
253 TTGTTGCCTCAAGAAGTTACCTTAGACACCTCTCTAGTGG
** * * * * * * * *
14325837 GTGCTAACCCTTCGGTGCCCGATGTTGCATCGAGCTCCTCCTTGGTGAGTGCCTCGTGCTAGATC
1 GTGCTGGCCCTTCGATGCCTGATGTTGCCTCCAGCTCCTCCTTGGTGGGTGCCTAGCGCTTGATC
* * ** **
14325902 CCT-GAAACACCTCTTTGGTCCTTGGCTAGTGCAGCCAATCGCAT-CACCACCATCGGTGTTAGA
66 CCTCG-AACACCTCTTTGGTCCTTGGCTGGTGCAGCCAATCACATCCACCACCATCAATGGCAGA
* * * * * * * * *
14325965 TGCAAGCTCGTTGTTGCTCCA-AGATGTTACCTCAAACACCATTAGGATGCTAGGCCATTAATAG
130 TGCTAGCCCATTGTTGC-CCAGGGATGTTACCTCAGACATCATCAAGATGCTA-GCCATCAA-AG
* * * * * * ** *
14326029 TGTTTGGCCTTTAGCTGGTGCT-ACCAATCATGTCCAACACCATCGAT-GACAAATGCTTGCCTA
192 TGTCTAGCCCTTGGCTGGTG-TAACCAATCA-ATCTAACACCATCGATAG-CTGATGCTAGCC-A
* * * * *
14326092 TTATTGCCTCAGGATGTTACCTTAGACACCGC-CTTGATGG
253 TTGTTGCCTCAAGAAGTTACCTTAGACACCTCTCTAG-TGG
* * * * * * * * * *
14326132 GTACTAGCCCGTCGGTGCCCGATGTTACCT-CAGGCTCCTCCTTGGTAGGTGCTTAACACTTGAT
1 GTGCTGGCCCTTCGATGCCTGATGTTGCCTCCA-GCTCCTCCTTGGTGGGTGCCTAGCGCTTGAT
* ** * * *
14326196 CCC-CTGAACACCTCTTTGGTCCTTGACTGGTGCAGCCAATCATGTTCACCACCATTAATGCCAG
65 CCCTC-GAACACCTCTTTGGTCCTTGGCTGGTGCAGCCAATCACATCCACCACCATCAATGGCAG
* * * * * * * * *
14326260 AAGCTGGCCCATTGTTACCCCGGGATGTTATCTCAAACACCATC-AGAATGTTGGCCATCAATAG
129 ATGCTAGCCCATTGTTGCCCAGGGATGTTACCTCAGACATCATCAAG-ATGCTAGCCATCAA-AG
* * * * * * * ** * *
14326324 TATCTAGCCCTTAGCTAGAGTGACCAACCACGTAC-AATGCCAATAG-T-GACTGATGCTGGCCT
192 TGTCTAGCCCTTGGCTGGTGTAACCAATCA-AT-CTAACACC-ATCGATAG-CTGATGCTAGCC-
* * * * * * **
14326386 GTTGTTGCCTTAAGAAGTTGCCTCAAACACCTCCCT-GACAG
252 ATTGTTGCCTCAAGAAGTTACCTTAGACACCTCTCTAG-TGG
* * * * **
14326427 GTGCTGGCCCCTC-AGTGCCTGATGTTGCCTCCAGCTCTTCCTTGGTGGGTACCTGGCATTTGAT
1 GTGCTGGCCCTTCGA-TGCCTGATGTTGCCTCCAGCTCCTCCTTGGTGGGTGCCTAGCGCTTGAT
* * * * * ** * * *
14326491 CCCTTGAGCACCTCTTTGGACCTTGGCTGGTGTAGCCAATTATGTCCACCACCATCGATAGTAGA
65 CCCTCGAACACCTCTTTGGTCCTTGGCTGGTGCAGCCAATCACATCCACCACCATCAATGGCAGA
* * * * * *
14326556 TGCTAGCCCATTGTTGCCCCGGGATATTACCTCAGACATAATCGAGATGCTTGCCCATCGAAATT
130 TGCTAGCCCATTGTTGCCCAGGGATGTTACCTCAGACATCATCAAGATGCTAG-CCATC-AAAGT
* * * ** *
14326621 GTCTAGCCCTTGGTTGGTGCAACCAATCGAATCTAACACCATTGGCAGTTGATGCTAGCTCATTG
193 GTCTAGCCCTTGGCTGGTGTAACCAATC-AATCTAACACCATCGATAGCTGATGCTAGC-CATTG
* * * *
14326686 TTGCCTCAAGAAGTTACCTCAAACACCTCTCTAGCGA
256 TTGCCTCAAGAAGTTACCTTAGACACCTCTCTAGTGG
* * * ** *
14326723 GTGCTGGCCTTTTGATACCTGATGGTT-CCTTGAGCTACTCCTTGGTGGGTGCCTAGCGCTTGAT
1 GTGCTGGCCCTTCGATGCCTGAT-GTTGCCTCCAGCTCCTCCTTGGTGGGTGCCTAGCGCTTGAT
* * ** * * *
14326787 CCCTCGAACACTTCTTTGGTCTTTGGCTGGTGTGGCCAATCACGTCCACCACCATCAGTGGTAGA
65 CCCTCGAACACCTCTTTGGTCCTTGGCTGGTGCAGCCAATCACATCCACCACCATCAATGGCAGA
* * *
14326852 TGCTAGCCCATTGTTGCCC-GGAGATGTTACGTTAGACATCATCAAGATGCTAGCCCATCGACAG
130 TGCTAGCCCATTGTTGCCCAGG-GATGTTACCTCAGACATCATCAAGATGCTAG-CCATC-AAAG
* * * * * * * *
14326916 TGTCTGGCCCTTGGTTGGTGTACCCTATCACATCTAGCACCATCGATAGCAGATACTGGCTCATT
192 TGTCTAGCCCTTGGCTGGTGTAACCAATCA-ATCTAACACCATCGATAGCTGATGCTAGC-CATT
* * * * * * *
14326981 GTTGCCTCAGGATGTTACCTCAGACACTTTTTTGGTGG
255 GTTGCCTCAAGAAGTTACCTTAGACACCTCTCTAGTGG
* * * * * * * * * * *
14327019 GTCCTAGCCCTT-TAGTGCTTGATGTTGCATCGAGCTCCTCCTTGGTGAGTGCTTGGTGCTGGAT
1 GTGCTGGCCCTTCGA-TGCCTGATGTTGCCTCCAGCTCCTCCTTGGTGGGTGCCTAGCGCTTGAT
* * * * * *
14327083 CCC-CTAAATAGCTCTTCGATCCTTGGCTGGTGCAGCCAATCATATCCAC
65 CCCTC-GAACACCTCTTTGGTCCTTGGCTGGTGCAGCCAATCACATCCAC
14327132 GACCNNNNNN
Statistics
Matches: 1455, Mismatches: 370, Indels: 122
0.75 0.19 0.06
Matches are distributed among these distances:
294 12 0.01
295 657 0.45
296 767 0.53
297 19 0.01
ACGTcount: A:0.21, C:0.28, G:0.23, T:0.29
Consensus pattern (292 bp):
GTGCTGGCCCTTCGATGCCTGATGTTGCCTCCAGCTCCTCCTTGGTGGGTGCCTAGCGCTTGATC
CCTCGAACACCTCTTTGGTCCTTGGCTGGTGCAGCCAATCACATCCACCACCATCAATGGCAGAT
GCTAGCCCATTGTTGCCCAGGGATGTTACCTCAGACATCATCAAGATGCTAGCCATCAAAGTGTC
TAGCCCTTGGCTGGTGTAACCAATCAATCTAACACCATCGATAGCTGATGCTAGCCATTGTTGCC
TCAAGAAGTTACCTTAGACACCTCTCTAGTGG
Found at i:14325881 original size:591 final size:582
Alignment explanation
Indices: 14324964--14327131 Score: 1625
Period size: 591 Copynumber: 3.7 Consensus size: 582
14324954 TAGCCCCTCA
* * * * * * *
14324964 ATGCCTGAT-GTTACCTCAAGCTCCTCCTTGGTAGGTGCCTGGCACTTAATCCCCCGAACACCTC
1 ATGCCTGATGGTT-CCT-TAGCTCCTCCTTGGTGGGTGCCTAGCGCTTGATCCCCTGAACACCTT
** * * * ** * * *
14325028 TTTGGTCCTTGATTGGTGTGACCAATCATGTTCACCACCATCGGTGGCAAAAGCTGGCCTATTGT
64 TTTGGTCCTTGGCTGGTGCGACCAATCACGTCCACCACCATCAATGGCAGATGCTGGCCCATTGT
** * * * * * * ** * *
14325093 TGCCCTAAGATGTTACCTC-GAACACCATTAGAATGCTAGCCCATCAATAGCATCTGGCCTTTAA
129 TGCCC-GGGATGTTACCTCAG-ACATCATCAGGATGAT-GGCCATCGATAGTGTCTGGCCCTT-G
* * * * * * * *
14325157 CTGGTGTAACC-ATTCACGTACAAT-GCCATC-AGT-GATAGATGCTAGCCCATTGTTGCC-CTG
190 CTAGTGTAGCCTA-TCACATCCAGTAG-CATCGA-TAG-TAGATACT-GCCTATTGTTGCCTC-A
* * * * * *
14325217 AGAAGTTACCTTAAACACCTCCCTGGTGGGTGCTGGCCCCTC-GATGCCTGATGTTGCCTCCAGC
249 AGATGTTGCCTCAGACACCTCCCTGGTGGGTGCTAGCCCCTCAG-TGCCTGATGTTGCATCCAGC
** * * *
14325281 TTTTCCTTGGTGGGTGCCTGGCGTTTGATCCATCGAACACCTCTTTGGACCTTGGCTGGTGCAAC
313 TCCTCCTTGGTGAGTGCCTGGCGTTTGATCCCT-GAACACCTCTTTGGACCTTGGCTGGTGCAGC
* * * * * *
14325346 TAATGATGTCCACCACCATCGACGGCAGATACTGGCCCACTGTTGCCCTGGGATGTTACCTCGAA
377 CAATGATGTCCACCACCATCGATGGTAGATGCTAGCCCATTGTTGCCC-GGGATGTTACCTC-AA
*
14325411 CAGAATTAAGATGCTAGCCTATCAAAATCGTCTAGCCCTTGGCTGGTGTAACCAATCAAGTCTAA
440 CACAATTAAGATGCTAGCC-ATCAAAAT-GTCTAGCCCTTGGCTGGTGTAACCAATCAAGTCTAA
* *
14325476 CACCATTGGTGGCTGATGCTGGCTCATTGTTGCCTCAAGAAGTTACCTTAGACACTTCTCTAGTA
503 CACCATTGGTGGCTGATGCTAGCTCATTGTTGCCTCAAGAAGTTACCTTAGACACCTCTCTAGTA
14325541 GGTGATGGCCTTTCG
568 GGTGATGGCCTTTCG
* *
14325556 ATGCCTGATGGTTCCTTAGCTCCTCCTTGGTGGGTGCCTAGTGCTTGATCCCCTAAACACCTTTT
1 ATGCCTGATGGTTCCTTAGCTCCTCCTTGGTGGGTGCCTAGCGCTTGATCCCCTGAACACCTTTT
* * * * *
14325621 TAGTCCTTGGCTGATGCGACCAATCGCATCCACCACCATCAATGGCAGATGTTGGCCCATTGTTG
66 TGGTCCTTGGCTGGTGCGACCAATCACGTCCACCACCATCAATGGCAGATGCTGGCCCATTGTTG
* *
14325686 CCCAGGGATGTTACCTCAGACATCATCGGGATGATGGCTTATCGATAGTGTCTGGCCCTTGCCTA
131 CCC-GGGATGTTACCTCAGACATCATCAGGATGATGGC-CATCGATAGTGTCTGGCCCTTG-CTA
* *
14325751 GTGTAGCCTATCACATCCAGTAGCATCGATAGTAGATACTAGCCTATTGTTACCCCAAGATGTTG
193 GTGTAGCCTATCACATCCAGTAGCATCGATAGTAGATACT-GCCTATTGTTGCCTCAAGATGTTG
** ** * * * * *
14325816 CCTTGGACACCTCTTTGGTGGGTGCTAACCCTTCGGTGCCCGATGTTGCATCGAGCTCCTCCTTG
257 CCTCAGACACCTCCCTGGTGGGTGCTAGCCCCTCAGTGCCTGATGTTGCATCCAGCTCCTCCTTG
* * * * * *
14325881 GTGAGTGCCTCGTGCTAGATCCCTGAAACACCTCTTTGGTCCTTGGCTAGTGCAGCCAATCGCA-
322 GTGAGTGCCTGGCGTTTGATCCCTG-AACACCTCTTTGGACCTTGGCTGGTGCAGCCAAT-G-AT
* * * * * ** *
14325945 -T-CACCACCATCGGTGTTAGATGCAAGCTCGTTGTTGCTCCAAGATGTTACCTCAAACACCATT
384 GTCCACCACCATCGATGGTAGATGCTAGCCCATTGTTGC-CCGGGATGTTACCTC-AACACAATT
* * * * * * * * *
14326008 AGGATGCTAGGCCATTAATAGTGTTTGGCCTTTAGCTGGTGCT-ACCAATCATGTCCAACACCAT
447 AAGATGCTA-GCCATCAA-AATGTCTAGCCCTTGGCTGGTG-TAACCAATCAAGTCTAACACCAT
* * * ** * * * * * * *
14326072 CGATGACAAATGCTTGC-CTATTATTGCCTCAGGATGTTACCTTAGACACCGC-CTTGATGGGT-
509 TGGTGGCTGATGCTAGCTC-ATTGTTGCCTCAAGAAGTTACCTTAGACACCTCTCTAG-TAGGTG
* **
14326134 ACTAGCCCGTCG
572 A-TGGCCTTTCG
* * * * * * * *
14326146 GTGCCCGAT-GTTACCTCAGGCTCCTCCTTGGTAGGTGCTTAACACTTGATCCCCTGAACACCTC
1 ATGCCTGATGGTT-CCTTA-GCTCCTCCTTGGTGGGTGCCTAGCGCTTGATCCCCTGAACACCTT
* * * * * *
14326210 TTTGGTCCTTGACTGGTGC-AGCCAATCATGTTCACCACCATTAATGCCAGAAGCTGGCCCATTG
64 TTTGGTCCTTGGCTGGTGCGA-CCAATCACGTCCACCACCATCAATGGCAGATGCTGGCCCATTG
* * * * * * * * *
14326274 TTACCCCGGGATGTTATCTCAAACACCATCAGAATGTTGGCCATCAATAGTATCTAGCCCTTAGC
128 TT-GCCCGGGATGTTACCTCAGACATCATCAGGATGATGGCCATCGATAGTGTCTGGCCCTT-GC
* * * * * * * * * *
14326339 TAGAGT-GACCAACCACGTACAAT-GC--CAATAGTGACTGATGCTGGCCTGTTGTTGCCTTAAG
191 TAGTGTAG-CCTATCACATCCAGTAGCATCGATAGT-A--GATACT-GCCTATTGTTGCCTCAAG
* * *** * * *
14326400 AAGTTGCCTCAAACACCTCCCTGACAGGTGCTGGCCCCTCAGTGCCTGATGTTGCCTCCAGCTCT
251 ATGTTGCCTCAGACACCTCCCTGGTGGGTGCTAGCCCCTCAGTGCCTGATGTTGCATCCAGCTCC
* * * * *
14326465 TCCTTGGTGGGTACCTGGCATTTGATCCCTTGAGCACCTCTTTGGACCTTGGCTGGTGTAGCCAA
316 TCCTTGGTGAGTGCCTGGCGTTTGATCCC-TGAACACCTCTTTGGACCTTGGCTGGTGCAGCCAA
* * * *
14326530 TTATGTCCACCACCATCGATAGTAGATGCTAGCCCATTGTTGCCCCGGGATATTACCTCAGACAT
380 TGATGTCCACCACCATCGATGGTAGATGCTAGCCCATTGTTG-CCCGGGATGTTACCTCA-ACAC
** * * * *
14326595 AATCGAGATGCTTGCCCATCGAAATTGTCTAGCCCTTGGTTGGTGCAACCAATCGAA-TCTAACA
443 AATTAAGATGCTAG-CCATC-AAAATGTCTAGCCCTTGGCTGGTGTAACCAATC-AAGTCTAACA
** * * * *
14326659 CCATTGGCAGTTGATGCTAGCTCATTGTTGCCTCAAGAAGTTACCTCAAACACCTCTCTAG-CGA
505 CCATTGGTGGCTGATGCTAGCTCATTGTTGCCTCAAGAAGTTACCTTAGACACCTCTCTAGTAG-
* *
14326723 GTGCTGGCCTTTTG
569 GTGATGGCCTTTCG
* *
14326737 ATACCTGATGGTTCCTTGAGCTACTCCTTGGTGGGTGCCTAGCGCTTGAT-CCCTCGAACA-CTT
1 ATGCCTGATGGTTCCTT-AGCTCCTCCTTGGTGGGTGCCTAGCGCTTGATCCCCT-GAACACCTT
* * * * * *
14326800 CTTTGGTCTTTGGCTGGTGTGGCCAATCACGTCCACCACCATCAGTGGTAGATGCTAGCCCATTG
64 -TTTGGTCCTTGGCTGGTGCGACCAATCACGTCCACCACCATCAATGGCAGATGCTGGCCCATTG
* * * * * *
14326865 TTGCCCGGAGATGTTACGTTAGACATCATCAAGATGCTAGCCCATCGACAGTGTCTGGCCCTTGG
128 TTGCCCGG-GATGTTACCTCAGACATCATCAGGATGAT-GGCCATCGATAGTGTCTGGCCCTT-G
* * * * * * * * *
14326930 TTGGTGTACCCTATCACATCTAGCACCATCGATAGCAGATACTGGCTCATTGTTGCCTCAGGATG
190 CTAGTGTAGCCTATCACATCCAGTAGCATCGATAGTAGATACTGCCT-ATTGTTGCCTCAAGATG
* * *** * * * * *
14326995 TTACCTCAGACACTTTTTTGGTGGGTCCTAGCCCTTTAGTGCTTGATGTTGCATCGAGCTCCTCC
254 TTGCCTCAGACACCTCCCTGGTGGGTGCTAGCCCCTCAGTGCCTGATGTTGCATCCAGCTCCTCC
* * * * * * * * *
14327060 TTGGTGAGTGCTTGGTGCTGGATCCCCTAAATAGCTC-TTCGATCCTTGGCTGGTGCAGCCAATC
319 TTGGTGAGTGCCTGGCGTTTGAT-CCCTGAACACCTCTTTGGA-CCTTGGCTGGTGCAGCCAATG
*
14327124 ATATCCAC
382 ATGTCCAC
14327132 GACCNNNNNN
Statistics
Matches: 1197, Mismatches: 322, Indels: 114
0.73 0.20 0.07
Matches are distributed among these distances:
587 6 0.01
588 2 0.00
589 11 0.01
590 322 0.27
591 661 0.55
592 181 0.15
593 8 0.01
594 1 0.00
595 5 0.00
ACGTcount: A:0.21, C:0.28, G:0.23, T:0.29
Consensus pattern (582 bp):
ATGCCTGATGGTTCCTTAGCTCCTCCTTGGTGGGTGCCTAGCGCTTGATCCCCTGAACACCTTTT
TGGTCCTTGGCTGGTGCGACCAATCACGTCCACCACCATCAATGGCAGATGCTGGCCCATTGTTG
CCCGGGATGTTACCTCAGACATCATCAGGATGATGGCCATCGATAGTGTCTGGCCCTTGCTAGTG
TAGCCTATCACATCCAGTAGCATCGATAGTAGATACTGCCTATTGTTGCCTCAAGATGTTGCCTC
AGACACCTCCCTGGTGGGTGCTAGCCCCTCAGTGCCTGATGTTGCATCCAGCTCCTCCTTGGTGA
GTGCCTGGCGTTTGATCCCTGAACACCTCTTTGGACCTTGGCTGGTGCAGCCAATGATGTCCACC
ACCATCGATGGTAGATGCTAGCCCATTGTTGCCCGGGATGTTACCTCAACACAATTAAGATGCTA
GCCATCAAAATGTCTAGCCCTTGGCTGGTGTAACCAATCAAGTCTAACACCATTGGTGGCTGATG
CTAGCTCATTGTTGCCTCAAGAAGTTACCTTAGACACCTCTCTAGTAGGTGATGGCCTTTCG
Found at i:14330838 original size:45 final size:44
Alignment explanation
Indices: 14330756--14330844 Score: 124
Period size: 45 Copynumber: 2.0 Consensus size: 44
14330746 GACTATCATT
* * *
14330756 AGCACAAGCTGACCTTTGTATAGGCAATTGCCTTGACCACCATC
1 AGCACAAGCTGACCTTGGTACAAGCAATTGCCTTGACCACCATC
* *
14330800 AGCACAAGCTGGCCCTTGGTACAAGCACTTGCCTTGACCACCATC
1 AGCACAAGCT-GACCTTGGTACAAGCAATTGCCTTGACCACCATC
14330845 GACACATGCA
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
44 10 0.26
45 29 0.74
ACGTcount: A:0.26, C:0.33, G:0.19, T:0.22
Consensus pattern (44 bp):
AGCACAAGCTGACCTTGGTACAAGCAATTGCCTTGACCACCATC
Found at i:14335329 original size:295 final size:295
Alignment explanation
Indices: 14334916--14335660 Score: 686
Period size: 295 Copynumber: 2.5 Consensus size: 295
14334906 TACCCCTTCA
* * * * * * * *
14334916 GTGCTTGATGTTGCCTCAAACTTCTCCCTGGTAGGTGCCTGGTGCTTGATCGCTTGAACACCTTT
1 GTGCCTGATGTTGCCTCAAGCTTCTCCTTGGTGGGTGCCTGGCGCTTGATCCCATGAACACCTCT
* * * ** * * * *
14334981 TTGGTCCTTGGCTAGTGCATCCAATCGCTA--CATGACCATTAATGGTAGATGTTGGCCCATTCT
66 TTGGTCATTGGCTGGTGCAACCAATCG-TATCCACCACCA-TCATAGTCGATGTTGGCCTATTCT
* *** * * * **
14335044 TGCCCTAAGATTTTACTTTGGACACCATTGGGATGCTGGCCCATCAATAGTGTTTGGCCCTTGGC
129 TGCCCTAAGATTTTACCTTGGACACCATCAAGATACTAGCCCATCAATAGTGTCTAACCCTTGGC
* *
14335109 TGGTGTGGCCAATTGTATCCAACACCATCAATGGTAGATGCTAG-CTCATTGTTGCCC-AAGATG
194 TGGTGTGGCCAATTGCATCCAACA-CATCAATGATAGATGCTAGCCT-ATTGTTGCCCTAAGATG
* *
14335172 TTGCCTC-GAACACCTCTCTAGAGGGTGCTGGTCC-C-AAT
257 TTGCCCCAG-ACACCTCCCTAGAGGGTGCTGG-CCTCTAAT
* * *
14335210 GTGCCTGATGTTCCCTCAAGC-TCGTCCTTGGTGGGTGCTTGGCACTTGATCCCATGAACACCTC
1 GTGCCTGATGTTGCCTCAAGCTTC-TCCTTGGTGGGTGCCTGGCGCTTGATCCCATGAACACCTC
* **
14335274 TTTGGTCATTGGCTGGTGCAACCAATCGTGTCCACCACCATCGATAGTCGATGTTGGCCTATTGG
65 TTTGGTCATTGGCTGGTGCAACCAATCGTATCCACCACCATC-ATAGTCGATGTTGGCCTATTCT
* ** *
14335339 TGCCCCT-GGATGTTT-CCTCAGACACCATCAAGATACTAGCCGATCAATAGTGTCTAACCCTTG
129 TG-CCCTAAGAT-TTTACCTTGGACACCATCAAGATACTAGCCCATCAATAGTGTCTAACCCTTG
* * * * **
14335402 GCTGGTGTGGCCACTTGCATCCAACACATCGATGATAGATGTTGGCCTATTGTTGCCCTGGGATG
192 GCTGGTGTGGCCAATTGCATCCAACACATCAATGATAGATGCTAGCCTATTGTTGCCCTAAGATG
* * *
14335467 TTGCCCCAGACACCTCCCTAGTGGGTGTTGGCCTCTCAT
257 TTGCCCCAGACACCTCCCTAGAGGGTGCTGGCCTCTAAT
** * * * * *
14335506 -TGCCCTGACATTGCCTCAAGCTTCTCTTTGGTGGTTACCTAGCGCTTGATCCCGTGAACACCTC
1 GTG-CCTGATGTTGCCTCAAGCTTCTCCTTGGTGGGTGCCTGGCGCTTGATCCCATGAACACCTC
* *** * * * *
14335570 ATTT-GTCATTGACTGGTGTGGCCAATCATATCCACCATCATCAGAGGCAGATGTTGGCCTATTC
65 -TTTGGTCATTGGCTGGTGCAACCAATCGTATCCACCACCATCATAGTC-GATGTTGGCCTATTC
* * *
14335634 TTACCCCAAGATGTTACCTTGGACACC
128 TTGCCCTAAGATTTTACCTTGGACACC
14335661 TCTCTAGTGG
Statistics
Matches: 358, Mismatches: 76, Indels: 32
0.77 0.16 0.07
Matches are distributed among these distances:
293 3 0.01
294 103 0.29
295 131 0.37
296 116 0.32
297 5 0.01
ACGTcount: A:0.19, C:0.27, G:0.23, T:0.30
Consensus pattern (295 bp):
GTGCCTGATGTTGCCTCAAGCTTCTCCTTGGTGGGTGCCTGGCGCTTGATCCCATGAACACCTCT
TTGGTCATTGGCTGGTGCAACCAATCGTATCCACCACCATCATAGTCGATGTTGGCCTATTCTTG
CCCTAAGATTTTACCTTGGACACCATCAAGATACTAGCCCATCAATAGTGTCTAACCCTTGGCTG
GTGTGGCCAATTGCATCCAACACATCAATGATAGATGCTAGCCTATTGTTGCCCTAAGATGTTGC
CCCAGACACCTCCCTAGAGGGTGCTGGCCTCTAAT
Found at i:14335632 original size:296 final size:295
Alignment explanation
Indices: 14335086--14335632 Score: 642
Period size: 296 Copynumber: 1.9 Consensus size: 295
14335076 ATGCTGGCCC
* ** * *
14335086 ATCAATAGTGTTTGGCCCTTGGCTGGTGTGGCCAATTGTATCCAACACCATCAATGGTAGATGCT
1 ATCAATAGTGTCTAACCCTTGGCTGGTGTGGCCAATTGCATCCAACACCATCAATGATAGATGCT
* *
14335151 AGCTCATTGTTGCCCAAGATGTTGCCTCGAACACCTCTCTAGAGGGTGCTGGTCCCAATGTGCCT
66 AGCTCATTGTTGCCCAAGATGTTGCCCCGAACACCTCCCTAGAGGGTGCTGGTCCCAATGTGCCT
** * * *
14335216 GATGTTCCCTCAAGCTCGTCCTTGGTGGGTGCTTGGCACTTGATCCCATGAACACCTCTTTGGTC
131 GACATTCCCTCAAGCTCGTCCTTGGTGGGTACCTAGCACTTGATCCCATGAACACCTCTTTGGTC
* * * * *
14335281 ATTGGCTGGTGCAACCAATCGTGTCCACCACCATCGATAGTCGATGTTGGCCTATTGGTGCCCCT
196 ATTGACTGGTGCAACCAATCATATCCACCACCATCGAGAGGCGATGTTGGCCTATTGGTGCCCCT
14335346 GGATGTTTCCTCAGACACCATCAAGATACTAGCCG
261 GGATGTTTCCTCAGACACCATCAAGATACTAGCCG
* * *
14335381 ATCAATAGTGTCTAACCCTTGGCTGGTGTGGCCACTTGCATCCAACA-CATCGATGATAGATGTT
1 ATCAATAGTGTCTAACCCTTGGCTGGTGTGGCCAATTGCATCCAACACCATCAATGATAGATGCT
* ** * * *
14335445 GGC-CTATTGTTGCCCTGGGATGTTGCCCC-AGACACCTCCCTAGTGGGTGTTGG-CCTCTCAT-
66 AGCTC-ATTGTTGCCC-AAGATGTTGCCCCGA-ACACCTCCCTAGAGGGTGCTGGTCC-C-AATG
* * * * *
14335506 TGCCCTGACATTGCCTCAAGCTTC-TCTTTGGTGGTTACCTAGCGCTTGATCCCGTGAACACCTC
126 TG-CCTGACATTCCCTCAAGC-TCGTCCTTGGTGGGTACCTAGCACTTGATCCCATGAACACCTC
*** *
14335570 ATTT-GTCATTGACTGGTGTGGCCAATCATATCCACCATCATC-AGAGGCAGATGTTGGCCTATT
189 -TTTGGTCATTGACTGGTGCAACCAATCATATCCACCACCATCGAGAGGC-GATGTTGGCCTATT
14335633 CTTACCCCAA
Statistics
Matches: 208, Mismatches: 35, Indels: 17
0.80 0.13 0.07
Matches are distributed among these distances:
293 1 0.00
294 29 0.14
295 78 0.38
296 95 0.46
297 5 0.02
ACGTcount: A:0.19, C:0.27, G:0.24, T:0.30
Consensus pattern (295 bp):
ATCAATAGTGTCTAACCCTTGGCTGGTGTGGCCAATTGCATCCAACACCATCAATGATAGATGCT
AGCTCATTGTTGCCCAAGATGTTGCCCCGAACACCTCCCTAGAGGGTGCTGGTCCCAATGTGCCT
GACATTCCCTCAAGCTCGTCCTTGGTGGGTACCTAGCACTTGATCCCATGAACACCTCTTTGGTC
ATTGACTGGTGCAACCAATCATATCCACCACCATCGAGAGGCGATGTTGGCCTATTGGTGCCCCT
GGATGTTTCCTCAGACACCATCAAGATACTAGCCG
Found at i:14336263 original size:179 final size:178
Alignment explanation
Indices: 14335939--14336264 Score: 402
Period size: 179 Copynumber: 1.8 Consensus size: 178
14335929 TTGCCCCAAA
* *
14335939 ATGTTACCTCAGACACCTCTTTGGTGAGTGCTAGCCCCTAGTGCCTAATATTGCCTCGAGCTCCT
1 ATGTTACCTCAGACACCTCCTTGGTGAGTGCTAGCCCCTAGTGCCCAATATTGCCTCGAGCTCCT
* * * ** * *
14336004 CTTCGGTGGGTGCATAGCATTTGATCCCCTGAACACATCTTTGGTCCTTGGCTGGTGTAGCCAAT
66 CTTCGGTAGGTGCACAACATTTGATCCCCTGAACACATCTTTGGTCCTTGGCTGAAGCAGCAAAT
****
14336069 TGTGTCCACCACCATCAGCGACAGAGGCTGGCCCATTGTTGCTGTGGG
131 CACATCCACCACCATCAGCGACAGAGGCTGGCCCATTGTTGCTGTGGG
* * * * * *
14336117 ATGTTGCCTCAGACACCTCCTTGGTGGGTGCTGGCCCCTTAGTGCCCAATATTGGCTTGAGCTCT
1 ATGTTACCTCAGACACCTCCTTGGTGAGTGCTAGCCCC-TAGTGCCCAATATTGCCTCGAGCTCC
* * * * *
14336182 TCCTT-GGTAGGTGCCCAACGTTTGATTCCCTGAACACCTCTTTGGTTCTTGGCTGAAGCAGCAA
65 T-CTTCGGTAGGTGCACAACATTTGATCCCCTGAACACATCTTTGGTCCTTGGCTGAAGCAGCAA
*
14336246 ATCACATCCATCACCATCA
129 ATCACATCCACCACCATCA
14336265 ACGGTAGATG
Statistics
Matches: 121, Mismatches: 25, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
178 34 0.28
179 84 0.69
180 3 0.02
ACGTcount: A:0.18, C:0.29, G:0.24, T:0.29
Consensus pattern (178 bp):
ATGTTACCTCAGACACCTCCTTGGTGAGTGCTAGCCCCTAGTGCCCAATATTGCCTCGAGCTCCT
CTTCGGTAGGTGCACAACATTTGATCCCCTGAACACATCTTTGGTCCTTGGCTGAAGCAGCAAAT
CACATCCACCACCATCAGCGACAGAGGCTGGCCCATTGTTGCTGTGGG
Found at i:14340989 original size:45 final size:45
Alignment explanation
Indices: 14340882--14340981 Score: 128
Period size: 45 Copynumber: 2.2 Consensus size: 45
14340872 GAATGGGAAA
* * ** * *
14340882 TTGCCTCAACCACCATTGGCACAAGCTGGCCCTTGGTACGAGCAC
1 TTGCCTCGACCACCATCGATACAAGCTAGCACTTGGTACGAGCAC
* *
14340927 TTGCCTCGACCACCATCGATACAAGCTAGCACTTGGTATGGGCAC
1 TTGCCTCGACCACCATCGATACAAGCTAGCACTTGGTACGAGCAC
14340972 TTGCCTCGAC
1 TTGCCTCGAC
14340982 TTCCATCGGC
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.22, C:0.34, G:0.22, T:0.22
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGATACAAGCTAGCACTTGGTACGAGCAC
Found at i:14344760 original size:179 final size:178
Alignment explanation
Indices: 14344437--14344831 Score: 431
Period size: 179 Copynumber: 2.2 Consensus size: 178
14344427 CCACCTTTAG
* * * * *
14344437 TGGTAGATGCTGGCCTATTATTGCCTCGAGATGTTGCCTCAATCACCTTTTTGGTAGGTGTTGGC
1 TGGTAGATGATGGCCTATTATTACCTCGAGATGTTGCCTCAATCACCTCTCTGGTAGGTGTTAGC
* * * * * * *
14344502 CCCTCGATACTGATGTTGGCTTGATCTTCTCTTTAGCGGGTGCCTGGCGCTTGATCCCCAGAACA
66 CCCTCGATACAGATGTTGCCTTAAGCTTCTCTTTAGCAGGTGCCTAGCACTTGATCCCCAGAACA
* *
14344567 CCTCTTTGGTCCTTAGCTAGTGTGGCAAATCGCATACACCACCATCGA
131 CCTATTTAGTCCTTAGCTAGTGTGGCAAATCGCATACACCACCATCGA
* * *
14344615 TGGTAGATGATGGCCTATTGTTACCTTGAGATGTTGCCTCGAA-CACCTCTCTGGTTGGTGTTAG
1 TGGTAGATGATGGCCTATTATTACCTCGAGATGTTGCCTC-AATCACCTCTCTGGTAGGTGTTAG
* * * *
14344679 CCCCTC-AGTGCCAGATGTTGCCTTAAGCTTTTCTTTAGTAGGTTCCTAGCACTTGATCCCCTA-
65 CCCCTCGA-T-ACAGATGTTGCCTTAAGCTTCTCTTTAGCAGGTGCCTAGCACTTGATCCCC-AG
* * * * *
14344742 AACACCTATTTAGTCCTTAGCTAGTGCGACCAATCACGT-CAACCACCATCGA
127 AACACCTATTTAGTCCTTAGCTAGTGTGGCAAATCGCATAC-ACCACCATCGA
* * * *
14344794 TGATATATGTTGGCCCATTATTACCTC-ACGATGTTGCC
1 TGGTAGATGATGGCCTATTATTACCTCGA-GATGTTGCC
14344832 ATGGACACCA
Statistics
Matches: 179, Mismatches: 32, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
177 1 0.01
178 62 0.35
179 115 0.64
180 1 0.01
ACGTcount: A:0.19, C:0.26, G:0.22, T:0.32
Consensus pattern (178 bp):
TGGTAGATGATGGCCTATTATTACCTCGAGATGTTGCCTCAATCACCTCTCTGGTAGGTGTTAGC
CCCTCGATACAGATGTTGCCTTAAGCTTCTCTTTAGCAGGTGCCTAGCACTTGATCCCCAGAACA
CCTATTTAGTCCTTAGCTAGTGTGGCAAATCGCATACACCACCATCGA
Found at i:14347675 original size:45 final size:45
Alignment explanation
Indices: 14347602--14347706 Score: 122
Period size: 45 Copynumber: 2.3 Consensus size: 45
14347592 ACATGCATCG
* * * *
14347602 ACCATCATTAGCACAAGCTAGCCTTTGGTATAG-GCATTTGCCTCA
1 ACCACCATTGGCACAAGCTAGCCCTTGGTA-AGAGCACTTGCCTCA
* * * *
14347647 ACCACCATTGGCACAAGTTGGCCCTTGGTACGAGCACTTGCCTCG
1 ACCACCATTGGCACAAGCTAGCCCTTGGTAAGAGCACTTGCCTCA
14347692 ACCACCATTGGCACA
1 ACCACCATTGGCACA
14347707 TGCATGCCTT
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
44 1 0.02
45 50 0.98
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.24
Consensus pattern (45 bp):
ACCACCATTGGCACAAGCTAGCCCTTGGTAAGAGCACTTGCCTCA
Found at i:14349045 original size:296 final size:295
Alignment explanation
Indices: 14348405--14350840 Score: 692
Period size: 296 Copynumber: 8.2 Consensus size: 295
14348395 CTGGCCCTCT
* * * * * *
14348405 GTGCAACCAATGGCATCCAACACCATCAATGGTAGATGCTGGCCCGTTGTTGCCCCAAGAAGTTA
1 GTGCAGCCAATCGCATCCAACACCATCAATGGTAGATGCTGGCCCATTGTTGCCCTAGGATGTTA
* * *
14348470 CCTCAGAAACCTCTCTGGTGAGTGCTGGCCCCTCGATGCCTGATGTTTTCTCAAGCTCCTCCTTG
66 CCTCAGAAACCTCCCTAGTGAGTGCTGGCCCCTCGATGCCTGATGTTTCCTCAAGCTCCTCCTTG
** ** * ** ** * * **
14348535 GTAGGTGTTTGGTGCTTGATCCCCTAAATGCCTCTTTGGTCCTTAGCTTGTATGACCATTTGCAT
131 ACAGGTGCCTAGTGCTTGATCCCCTAAACACCTCTTTCATCATTAGCTAGTATGACCACATG-AT
* * ** * * *
14348600 CTACCACTATCGATGGTAGATGCTGGCCCATTGTTGCCCCAAGATGTTACCTCAGACACCATCAG
195 CCACCACCATCGATGACAGATGCTGACCCATTGTTGCCCCAAGATATTACCTCAGACACCATCAA
*
14348665 GATGCTAGCCTATCGACAGTGCCTGGCCCTTGGCTG
260 GATGCTAGCCTATCGACAGTGCCTGGCCCTTAGCTG
* * * * * **
14348701 GTGCAGCCAATCACGTCCAACACCTTCAATAGCAGATGCTAACCCATTGTTGCCCTAGGATGTTA
1 GTGCAGCCAATCGCATCCAACACCATCAATGGTAGATGCTGGCCCATTGTTGCCCTAGGATGTTA
* * *
14348766 CCTCA-AACACCTCCCTAGTGAGTGCTGGCCCTTCGGTGCTTGATGTTTCCTCAAGCTCCTCCTT
66 CCTCAGAA-ACCTCCCTAGTGAGTGCTGGCCCCTCGATGCCTGATGTTTCCTCAAGCTCCTCCTT
* * * *
14348830 GACGGGTGCCTAGTGCTTGGTCCCCTAAACACCTTTTTCATCATTGGCTAGTATGACCAACCATG
130 GACAGGTGCCTAGTGCTTGATCCCCTAAACACCTCTTTCATCATTAGCTAGTATGACC-A-CATG
* ** ** * *
14348895 -TCCACCACCATCGGTGACAGATGCT-ACCCTATTGTTGCCCCGTGATATTGGCTCGGGCACCAT
193 ATCCACCACCATCGATGACAGATGCTGACCC-ATTGTTGCCCCAAGATATTACCTCAGACACCAT
* * * ** * *
14348958 TAAGATGCTGGCCTATTGACAGTGTTTGGGCTTTAGCTG
257 CAAGATGCTAGCCTATCGACAGTGCCTGGCCCTTAGCTG
** * * * *
14348997 GTGCAGCCAATCGCATCCAACACCATCGGTGGTAGATGTTGGCCCATTGTTACCTTGGGATGTTA
1 GTGCAGCCAATCGCATCCAACACCATCAATGGTAGATGCTGGCCCATTGTTGCCCTAGGATGTTA
* ** ** * * *** * * *
14349062 CCTCAGACATTTCATTTA-TGGGTGCAGGCTTGTCAATG-CTCGATGTTGCCTTGAA-CTCCTCC
66 CCTCAGAAACCTC-CCTAGTGAGTGCTGGCCCCTCGATGCCT-GATGTTTCC-TCAAGCTCCTCC
** * * * * * ** * * * *
14349124 TTGGTAGATGCCTGGCGCTTGACCCCCCAAACACCTCTTTCGCCCTTAGCTGGTGTGGCCAATCA
128 TTGACAGGTGCCTAGTGCTTGATCCCCTAAACACCTCTTTCATCATTAGCTAGTATGACC-A-CA
**
14349189 TG-TCCACCACCATC-A--ACAGTAAATGCT-AGCCCATTGTTGCCCCAAGAGGTTACCTCAGAC
191 TGATCCACCACCATCGATGACAG---ATGCTGA-CCCATTGTTGCCCCAAGATATTACCTCAGAC
* * * * * * * *
14349249 ACCATTAGGATGTTGGCCTGTCGATAGT-CTCTAGCCAATTA-CTG
252 ACCATCAAGATGCTAGCCTATCGACAGTGC-CTGGCC-CTTAGCTG
** * * ** * * **
14349293 GTGTGGCCAATTGCATCCAACACCATCGATGACAAATGCTAGCCCATTGTCACCC-ATGGATGTT
1 GTGCAGCCAATCGCATCCAACACCATCAATGGTAGATGCTGGCCCATTGTTGCCCTA-GGATGTT
* * * * * * * * * *
14349357 GCCTCAGACACCTCTCTAACT-CGTGCTGGCCCCCCGATGCTTGATGTTGCCTTGAGGC-CCTCC
65 ACCTCAGAAACCTCCCT-AGTGAGTGCTGGCCCCTCGATGCCTGATGTTTCC-TCAAGCTCCTCC
*** * ** * * * ** * * *
14349420 TTGGTGGGTTCCTAGCACTTGATCCCCCAAACACATTTTTGGTCCTTGGCTAGTGT-AGCCA-AT
128 TTGACAGGTGCCTAGTGCTTGATCCCCTAAACACCTCTTTCATCATTAGCTAGTATGA-CCACAT
* ** * * * ** * * * *
14349483 CACGTCCACCATAATTGATGGCAGATGCT-AGCCCATTATTGCCCTGAGATGTTGCCTTAAACAC
192 GA--TCCACCACCATCGATGACAGATGCTGA-CCCATTGTTGCCCCAAGATATTACCTCAGACAC
* * ** * *
14349547 CTTCATGATGCTAGCCCGTCGACAGTGTCTGGCCCTTGGCTG
254 CATCAAGATGCTAGCCTATCGACAGTGCCTGGCCCTTAGCTG
* ** * * ** *
14349589 GTG-TGACCAATCATATCCAACACCATC-A-GGGACTGATGCTGGCCCATTTTTGCATTGGGATG
1 GTGCAG-CCAATCGCATCCAACACCATCAATGGTA--GATGCTGGCCCATTGTTGCCCTAGGATG
* * * * * * * * * * *
14349651 TTACCT-TGAACACCTCTCAAGTGGGTGCTAGCCCCTTGGTGCCTGATGTTGCCTCGATCTCTTC
63 TTACCTCAGAA-ACCTCCCTAGTGAGTGCTGGCCCCTCGATGCCTGATGTTTCCTCAAGCTCCTC
** * * * ** * * *
14349715 CTT-AGTGAGTGCCTCACGT--TTGATCCCCTGAACACTTATTTGGTCCTTAGCTGGTGT-AGCC
127 CTTGACAG-GTGCCT-A-GTGCTTGATCCCCTAAACACCTCTTTCATCATTAGCTAGTATGA-CC
* ** * *** * *
14349776 AATCATG-TCCACCACCATCGACGGTAGATGCT-AGCCCGTTGTTGCCCTGGGATGTTACCT-TG
188 -A-CATGATCCACCACCATCGATGACAGATGCTGA-CCCATTGTTGCCCCAAGATATTACCTCAG
*** * * * * * *
14349838 TACACCATTGGGATGTTGGCCTTTCGATAGTGTCTGGCCCTTGGCTG
250 -ACACCATCAAGATGCTAGCCTATCGACAGTGCCTGGCCCTTAGCTG
*** * * * * ** *** *
14349885 GTGCAGCCAATCATGTCCAACACAATCAGTGATAGATGTTAACTTGTTATTG-CCTAGGGATGTT
1 GTGCAGCCAATCGCATCCAACACCATCAATGGTAGATGCTGGCCCATTGTTGCCCTA-GGATGTT
* * * * * * * ** * * * *
14349949 GCCTCAGACACCTGCCTAGTGGGTACTAGCCCCTTGGGGCCTAATGTTGCCTCGAGCTTCTCCTT
65 ACCTCAGAAACCTCCCTAGTGAGTGCTGGCCCCTCGATGCCTGATGTTTCCTCAAGCTCCTCCTT
** * ** * *
14350014 -AGTGGGTGCCTAGCGCTTGATCCGCC-AAACACCTCTTTTGTC-TTTGACTGGTAT-AGCCA-A
130 GA-CAGGTGCCTAGTGCTTGATCC-CCTAAACACCTCTTTCATCATTAG-CTAGTATGA-CCACA
* * * * * * * * * *
14350074 TCTCG-TGCACCACCATCGATAATAGATGTTGGCCCGTTGTTGCCTCAGGATGTAACCTCAGACA
191 --T-GATCCACCACCATCGATGACAGATGCTGACCCATTGTTGCCCCAAGATATTACCTCAGACA
* * * * * * *
14350138 CCAT-AGAGATGTTGGCCCATCGATAGCGTCTGGCCCTTGGCTG
253 CCATCA-AGATGCTAGCCTATCGACAGTGCCTGGCCCTTAGCTG
* * *** * ** * * * * * * *
14350181 GGGCAACCAATCATGTCCAATACCATTGACGGCA-ATGCTAGCCAATTGTTGTCGTAAGAT-TAT
1 GTGCAGCCAATCGCATCCAACACCATCAATGGTAGATGCTGGCCCATTGTTGCCCTAGGATGT-T
* * ** * ** * * * * ** **
14350244 GCTTTGGACATTTCTCTGACG-G-GTGTTGGCCCCTCGGTGCTTGATGTTGGCTCAAAATCCTCC
65 ACCTCAGAAACCTCCCT-A-GTGAGTGCTGGCCCCTCGATGCCTGATGTTTCCTCAAGCTCCTCC
* * ** * * *
14350307 TTCG-TAGGTGCCTAGTGCTTGATCCCCCAAACACCTCTTTGGTTATTGGCTAGTGTGACCAGCA
128 TT-GACAGGTGCCTAGTGCTTGATCCCCTAAACACCTCTTTCATCATTAGCTAGTATGACCA-CA
* * * * * * * * * *
14350371 -GCATCCACCACCATTGGTGGCAGATGTTGGCTCATTGTTGCCCTAGGATGTTACCTCA-ACACT
191 TG-ATCCACCACCATCGATGACAGATGCTGACCCATTGTTGCCCCAAGATATTACCTCAGACACC
*** * * * * * * * * * *
14350434 ATTGGGATGTTGGCCCATCGATAATGTCTAGCCTTTGGTTG
255 ATCAAGATGCTAGCCTATCGACAGTGCCTGGCCCTTAGCTG
** * * * *** ** *** *
14350475 GTGTGGGCAATCACATCCAACACCTTTGGTGGTAGATATTGGCCCATTGTTGTGTTAGGATGTTG
1 GTGCAGCCAATCGCATCCAACACCATCAATGGTAGATGCTGGCCCATTGTTGCCCTAGGATGTTA
* * * ** *
14350540 CCTCA-AACACCTCTCT-G-GCAGGTGCTGGCCCCTCAATGCCTGATGTTGCCTTGAGATCCTCC
66 CCTCAGAA-ACCTCCCTAGTG-A-GTGCTGGCCCCTCGATGCCTGATGTTTCCTCAAGCTCCTCC
** * ** * *
14350602 TTGATGGGTGCCTAGTGTTTGATCCCCTAAACACCTCTTTGGTCTTTGGCTAG--TGCAGCCA-A
128 TTGACAGGTGCCTAGTGCTTGATCCCCTAAACACCTCTTTCATCATTAGCTAGTATG-A-CCACA
* ** * * ** ** * * ** *
14350664 TCGCATTCACCATAATTGGTGGTAGATGCTTTCCCGTTATTGCCCTGAGATGTTACCTCAGACAC
191 T-G-ATCCACCACCATCGATGACAGATGCTGACCCATTGTTGCCCCAAGATATTACCTCAGACAC
* * * * * * *
14350729 AATCAGGATGCTGGTCC-ATCGACATTGTCTAGCCCTTAGTTG
254 CATCAAGATGCTAG-CCTATCGACAGTGCCTGGCCCTTAGCTG
* * * * * * * * *
14350771 GTGCGGCCAAACGCATTCACCACCATTAGTGGTAGATGCTAGCCCATTGTTGCCCCAGGATGTTG
1 GTGCAGCCAATCGCATCCAACACCATCAATGGTAGATGCTGGCCCATTGTTGCCCTAGGATGTTA
14350836 CCTCA
66 CCTCA
14350841 AACACCATCG
Statistics
Matches: 1620, Mismatches: 435, Indels: 170
0.73 0.20 0.08
Matches are distributed among these distances:
292 2 0.00
293 11 0.01
294 68 0.04
295 325 0.20
296 1174 0.72
297 30 0.02
298 5 0.00
299 5 0.00
ACGTcount: A:0.20, C:0.28, G:0.23, T:0.29
Consensus pattern (295 bp):
GTGCAGCCAATCGCATCCAACACCATCAATGGTAGATGCTGGCCCATTGTTGCCCTAGGATGTTA
CCTCAGAAACCTCCCTAGTGAGTGCTGGCCCCTCGATGCCTGATGTTTCCTCAAGCTCCTCCTTG
ACAGGTGCCTAGTGCTTGATCCCCTAAACACCTCTTTCATCATTAGCTAGTATGACCACATGATC
CACCACCATCGATGACAGATGCTGACCCATTGTTGCCCCAAGATATTACCTCAGACACCATCAAG
ATGCTAGCCTATCGACAGTGCCTGGCCCTTAGCTG
Found at i:14350571 original size:295 final size:296
Alignment explanation
Indices: 14350256--14350846 Score: 656
Period size: 295 Copynumber: 2.0 Consensus size: 296
14350246 TTTGGACATT
* * ** * *
14350256 TCTCTGACGGGTGTTGGCCCCTCGGTGCTTGATGTTGGCTCAAAATCCTCCTTCG-TAGGTGCCT
1 TCTCTGACAGGTGCTGGCCCCTCAATGCCTGATGTTGCCTCAAAATCCTCCTT-GATAGGTGCCT
*
14350320 AGTGCTTGATCCCCCAAACACCTCTTTGGT-TATTGGCTAGTG-TGACC-AGCAGCATCCACCAC
65 AGTGCTTGATCCCCCAAACACCTCTTTGGTCT-TTGGCTAGTGCAG-CCAAGC-GCATCCACCAC
* * * * ** *
14350382 CATTGGTGGCAGATG-TTGGCTCATTGTTGCCCT-AGGATGTTACCTCA-ACACTATTGGGATGT
127 AATTGGTGGCAGATGCTT-GCCCATTATTGCCCTGA-GATGTTACCTCAGACACAATCAGGATGC
* * * * * * * *
14350444 TGGCCCATCGATAATGTCTAGCCTTTGGTTGGTGTGGGCAATCACATCCAACACCTTTGGTGGTA
190 TGGCCCATCGACAATGTCTAGCCCTTAGTTGGTGCGGCCAAACACATCCAACACCATTAGTGGTA
* * ****
14350509 GATATTGGCCCATTGTTGTGTTAGGATGTTGCCTCAAACACC
255 GATACTAGCCCATTGTTGCCCCAGGATGTTGCCTCAAACACC
* ** * *
14350551 TCTCTGGCAGGTGCTGGCCCCTCAATGCCTGATGTTGCCTTGAGATCCTCCTTGATGGGTGCCTA
1 TCTCTGACAGGTGCTGGCCCCTCAATGCCTGATGTTGCCTCAAAATCCTCCTTGATAGGTGCCTA
* * * * *
14350616 GTGTTTGATCCCCTAAACACCTCTTTGGTCTTTGGCTAGTGCAGCCAATCGCATTCACCATAATT
66 GTGCTTGATCCCCCAAACACCTCTTTGGTCTTTGGCTAGTGCAGCCAAGCGCATCCACCACAATT
* * * *
14350681 GGTGGTAGATGCTTTCCCGTTATTGCCCTGAGATGTTACCTCAGACACAATCAGGATGCTGGTCC
131 GGTGGCAGATGCTTGCCCATTATTGCCCTGAGATGTTACCTCAGACACAATCAGGATGCTGGCCC
* * * * *
14350746 ATCGACATTGTCTAGCCCTTAGTTGGTGCGGCCAAACGCATTCACCACCATTAGTGGTAGATGCT
196 ATCGACAATGTCTAGCCCTTAGTTGGTGCGGCCAAACACATCCAACACCATTAGTGGTAGATACT
14350811 AGCCCATTGTTGCCCCAGGATGTTGCCTCAAACACC
261 AGCCCATTGTTGCCCCAGGATGTTGCCTCAAACACC
14350847 ATCGGCATAT
Statistics
Matches: 242, Mismatches: 47, Indels: 13
0.80 0.16 0.04
Matches are distributed among these distances:
294 1 0.00
295 136 0.56
296 105 0.43
ACGTcount: A:0.19, C:0.27, G:0.24, T:0.30
Consensus pattern (296 bp):
TCTCTGACAGGTGCTGGCCCCTCAATGCCTGATGTTGCCTCAAAATCCTCCTTGATAGGTGCCTA
GTGCTTGATCCCCCAAACACCTCTTTGGTCTTTGGCTAGTGCAGCCAAGCGCATCCACCACAATT
GGTGGCAGATGCTTGCCCATTATTGCCCTGAGATGTTACCTCAGACACAATCAGGATGCTGGCCC
ATCGACAATGTCTAGCCCTTAGTTGGTGCGGCCAAACACATCCAACACCATTAGTGGTAGATACT
AGCCCATTGTTGCCCCAGGATGTTGCCTCAAACACC
Found at i:14351224 original size:412 final size:412
Alignment explanation
Indices: 14350514--14351258 Score: 881
Period size: 412 Copynumber: 1.8 Consensus size: 412
14350504 TGGTAGATAT
** * *
14350514 TGGCCCATTGTTGTGTTAGGATGTTGCCTCAAACACCTCTCTGGCAGGTGCTGGCCCCTCAATGC
1 TGGCCCATTGTTGCCTTAGGATGTTGCCTCAAACACCTCCCTAGCAGGTGCTGGCCCCTCAATGC
** * * * *
14350579 CTGATGTTGCCTTGAGATCCTCCTTGATGGGTGCCTAGTGTTTGATCCCCTAAACACCTCTTTGG
66 CCAATGTTGCCTCGAGATCCTCCTTAATGGGTGCCTACTGCTTGATCCCCTAAACACCTCTTTGG
* * * * * * * **
14350644 TCTTTGGCTAGTGCAGCCAATCGCATTCACCATAATTGGTGGTAGATGCTTTCCCGTTATTGCCC
131 CCCTTGGCTAGTGAAGCCAATCGCATCCACCACAATTGATGGCAGATGCTGGCCCGTTATTGCCC
* ** * * *
14350709 TGAGATGTTACCTCAGACACAATCAGGATGCTGGTCCATCGACATTGTCTAGCCCTTAGTTGGTG
196 AGAGATGCCACCTCAGACACAATCAGGATGCTGCTCCATCGACAATGTCTAGCCCTTAGCTGGTG
* * * * * *
14350774 CGGCCAAACGCATTCACCACCATTAGTGGTAGATGCTAGCCCATTGTTGCCC-CAGGATGTTGCC
261 CGACCAAACACATTCAACACCATCAGTGGCAAATGCTAGCCCATTGTTGCCCTCA-GATGTTGCC
14350838 TCAAACACCATCGGCATATTGGCACGTCATAGCGTTTAGCCCTTGGCAAGTGTGGCCAATCGCGT
325 TCAAACACCATCGGCATATTGGCACGTCATAGCGTTTAGCCCTTGGCAAGTGTGGCCAATCGCGT
14350903 CCAACATCTTCGATGGCAAAAGC
390 CCAACATCTTCGATGGCAAAAGC
* * * ** *
14350926 TGGCCTATTGTTGCCTTGGGATGTTGCCTCAAACACTTCCCTAGTGGGTGTTGGCCCCTCAATGC
1 TGGCCCATTGTTGCCTTAGGATGTTGCCTCAAACACCTCCCTAGCAGGTGCTGGCCCCTCAATGC
* *
14350991 CCAATGTTGCCTCGAGCTCCTCCTTAATGGGTGCCTAACT-CTTGAT-CCCTCGAACACCTCTTT
66 CCAATGTTGCCTCGAGATCCTCCTTAATGGGTGCCT-ACTGCTTGATCCCCT-AAACACCTCTTT
* * * *
14351054 GGCCCTTGGCTAGTGAAGCTAATCGTATCCACCACCATTGATGGCAGATGCTGGCCCGTTGTTGC
129 GGCCCTTGGCTAGTGAAGCCAATCGCATCCACCACAATTGATGGCAGATGCTGGCCCGTTATTGC
* * * * * * *
14351119 CCA-AGAATGCCACCTCGGATACAATC-GAGATGCTAGCT-GATTGATAATGTCTGGCCCTTGGC
194 CCAGAG-ATGCCACCTCAGACACAATCAG-GATGCT-GCTCCATCGACAATGTCTAGCCCTTAGC
* * * ** *
14351181 TGGTGTGACCAATCACATTCAACACCATCGGTGGCAAATGCTAGCTTATTGTTGCCCTTAGATGT
256 TGGTGCGACCAAACACATTCAACACCATCAGTGGCAAATGCTAGCCCATTGTTGCCCTCAGATGT
*
14351246 TGCCTCAGACACC
321 TGCCTCAAACACC
14351259 TTTCTAGTGG
Statistics
Matches: 270, Mismatches: 57, Indels: 12
0.80 0.17 0.04
Matches are distributed among these distances:
411 7 0.03
412 258 0.96
413 5 0.02
ACGTcount: A:0.20, C:0.28, G:0.23, T:0.29
Consensus pattern (412 bp):
TGGCCCATTGTTGCCTTAGGATGTTGCCTCAAACACCTCCCTAGCAGGTGCTGGCCCCTCAATGC
CCAATGTTGCCTCGAGATCCTCCTTAATGGGTGCCTACTGCTTGATCCCCTAAACACCTCTTTGG
CCCTTGGCTAGTGAAGCCAATCGCATCCACCACAATTGATGGCAGATGCTGGCCCGTTATTGCCC
AGAGATGCCACCTCAGACACAATCAGGATGCTGCTCCATCGACAATGTCTAGCCCTTAGCTGGTG
CGACCAAACACATTCAACACCATCAGTGGCAAATGCTAGCCCATTGTTGCCCTCAGATGTTGCCT
CAAACACCATCGGCATATTGGCACGTCATAGCGTTTAGCCCTTGGCAAGTGTGGCCAATCGCGTC
CAACATCTTCGATGGCAAAAGC
Found at i:14352636 original size:253 final size:253
Alignment explanation
Indices: 14352182--14352645 Score: 565
Period size: 253 Copynumber: 1.8 Consensus size: 253
14352172 GCCTTTATGT
* * ** * *
14352182 TACCTTGAGCTCCTCCTTGGTGGGTGCTTGGTGCTTGATCCCCTAAACCCTTTTTTAGTCTTTGG
1 TACCTCGAGCTCCTCCTTGGTGGGTGCCTAATGCTTGATCCCCTAAACCCTTCTTTAGTCCTTGG
* * * * * *
14352247 CTGGTGTAACCAATCATTTCCACCACCATCGGAGGCAGATGCTGGCCCACTATTGCCTTAGGATG
66 CTGGTGCAACCAATCATGTCCACCACCATCGGAGACAGATGCTGGCCCACTATTACCCTAAGATG
* * * * *** * *
14352312 TTGCCCCAAACACCATCAGGATGCTGGCCTATCAATAGTGTCTGGCCATTGGCTGGTGTGAACAA
131 TTACCACAAACACAATCAGGATGCTGGCCCATCAATAACATCTGGCCATTGGCTAGTGCGAACAA
14352377 TCATGTCCAACACCATCAACACCTCCTTGGTGAGTGCTAGCCCCTTAGTGCTCGACGA
196 TCATGTCCAACACCATCAACACCTCCTTGGTGAGTGCTAGCCCCTTAGTGCTCGACGA
* *
14352435 TACCTCGAGCTCCTCTTTGGTGGGTGCCTAATGCTTGATCCCCTAAACACC-TCTTTGGTCCTTG
1 TACCTCGAGCTCCTCCTTGGTGGGTGCCTAATGCTTGATCCCCTAAAC-CCTTCTTTAGTCCTTG
* * * * * *
14352499 GCTGGTGCAGCCAATCGTGTCCACCACCATC-GATGATAGATGTTGGCCCATTGTTACCCTAAGA
65 GCTGGTGCAACCAATCATGTCCACCACCATCGGA-GACAGATGCTGGCCCACTATTACCCTAAGA
* * * ** *
14352563 TGTTACCACAGACACAATTAGGATGCTGGCCCATCCATAACATCTGGCTTTTGGCTAGTGCCG-C
129 TGTTACCACAAACACAATCAGGATGCTGGCCCATCAATAACATCTGGCCATTGGCTAGTG-CGAA
14352627 CAATCATGTCCAACACCAT
193 CAATCATGTCCAACACCAT
14352646 TGGTGGTAAA
Statistics
Matches: 173, Mismatches: 35, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
252 2 0.01
253 168 0.97
254 3 0.02
ACGTcount: A:0.21, C:0.29, G:0.22, T:0.28
Consensus pattern (253 bp):
TACCTCGAGCTCCTCCTTGGTGGGTGCCTAATGCTTGATCCCCTAAACCCTTCTTTAGTCCTTGG
CTGGTGCAACCAATCATGTCCACCACCATCGGAGACAGATGCTGGCCCACTATTACCCTAAGATG
TTACCACAAACACAATCAGGATGCTGGCCCATCAATAACATCTGGCCATTGGCTAGTGCGAACAA
TCATGTCCAACACCATCAACACCTCCTTGGTGAGTGCTAGCCCCTTAGTGCTCGACGA
Found at i:14356034 original size:117 final size:118
Alignment explanation
Indices: 14355765--14356034 Score: 294
Period size: 118 Copynumber: 2.3 Consensus size: 118
14355755 ACCTCTTGGT
* *
14355765 CCTTGGCTGGTGTGAG-CAATCGCATCCACCACCATCGGTGGCAGATGCTAGCCCATTGTTGCCC
1 CCTTGGCTGGTGTG-GCCAATCACATCCAACACCATCGGTGGCAGATGCTAGCCCATTGTTGCCC
* * * ** *
14355829 CAGGATGTTGCCTCAAACACCATTTGGGATGTTGGCCCGTTTATAGCATCTAAC
65 CAGGATGTTACCTCAAACACCATTTGGGATGCTGGCCCATCGACAGCATCTAAC
* ** * * * * * * * *
14355883 CTTTAACTAGTGCGACCAATCACATCCAACACCATCGGTGGTAGATGCTGGCCTATTTTTGCCTC
1 CCTTGGCTGGTGTGGCCAATCACATCCAACACCATCGGTGGCAGATGCTAGCCCATTGTTGCCCC
* * * *
14355948 -GAGATGTTACCTCAGACCCCA-TTGGGATGCTGGCCTATCGACAGCATCTGAC
66 AG-GATGTTACCTCAAACACCATTTGGGATGCTGGCCCATCGACAGCATCTAAC
14356000 CCTTGGCTGGTGTGGCCAATCACATCCAACACCAT
1 CCTTGGCTGGTGTGGCCAATCACATCCAACACCAT
14356035 TAGCAGTAGA
Statistics
Matches: 121, Mismatches: 29, Indels: 5
0.78 0.19 0.03
Matches are distributed among these distances:
117 54 0.45
118 67 0.55
ACGTcount: A:0.22, C:0.30, G:0.23, T:0.26
Consensus pattern (118 bp):
CCTTGGCTGGTGTGGCCAATCACATCCAACACCATCGGTGGCAGATGCTAGCCCATTGTTGCCCC
AGGATGTTACCTCAAACACCATTTGGGATGCTGGCCCATCGACAGCATCTAAC
Found at i:14365847 original size:298 final size:296
Alignment explanation
Indices: 14365172--14366008 Score: 744
Period size: 298 Copynumber: 2.8 Consensus size: 296
14365162 CCATTGGCAG
* * * * ** * * *
14365172 CAGATGCTGGCCCATTGTTGCCTTGGAATGTTCCCTCAAACATGTCCTTGGCAAGTGCTGGCCCC
1 CAGATGCTGACCTATTGTTGCCTTGGGATGTTACCTCAAACACCTCTTTGGTAGGTGCTGG-CCC
** * * *
14365237 TAAAG-GCCCGATGTTGCCTTGAGCTTCTCCTTGGTAGGTGATTGGTGCTTGATCCCCTGAACAC
65 TTCAGTGCCCGATGTTGCCTTGAGCTCCTCCTTGGTAGGTGCTTGGTGCTTGATCCCCT-AAAAC
* * * * *
14365301 CTC-TTTGAT-CTATGGTTGGTGTGGCCAATCGCATCCACCACCATCGATAGTAGATGTTAGG-C
129 CTCTTTTG-TCCT-TGGTCGGTGCGGCCAATCACGTCCACCACCATCGATGGTAGATGTT-GGCC
* * * * ** * * * * * *
14365363 CATTTATTGCCTCTAGATGTTACCTCAGACACCATCGGGATACTAG--AATGTCAATAGCATTTA
191 CA-TTATTACCTCAAGATGTTGCCTTAGACACCATTAGGATGCTGGCCATTGGCAACAGCATCTA
* *
14365426 GCCCAAGCTGGTGTGACCAATCACATCCAATACTATCAACGA
255 GCCCAAGCTGGTGTGACCAATCACATCCAACACCATCAACGA
* * * * * ** * *
14365468 CAGATGCT-AGCCTATTGTTACCCTGGGATGTTACTTCAGATACCTCTTTAATAGGAGCTAGCCC
1 CAGATGCTGA-CCTATTGTTGCCTTGGGATGTTACCTCAAACACCTCTTTGGTAGGTGCTGGCCC
* ** *
14365532 TTCAGTGCCTGATGTTGCCTCAAGCTCCTCCTTGGTAGGTCCTTGGTGCTTGATCCCCTAAAAAC
65 TTCAGTGCCCGATGTTGCCTTGAGCTCCTCCTTGGTAGGTGCTTGGTGCTTGATCCCCT-AAAAC
* * *
14365597 CTCTTTTGTCCTTGGTCGATGGGGCCAATCACGTCCACCACAATCGATGGTAGATGTTGGCCCAT
129 CTCTTTTGTCCTTGGTCGGTGCGGCCAATCACGTCCACCACCATCGATGGTAGATGTTGGCCCAT
*
14365662 TATTACCTCAAGATGTTGCCTTAGACACCATTAGGATGCTGGCCTATTGGC-ACAGCATCTGGCA
194 TATTACCTCAAGATGTTGCCTTAGACACCATTAGGATGCTGGCC-ATTGGCAACAGCATCTAGC-
*** * ***
14365726 CTTGGCTAGG-GTGACCAATCGCATCCAACACCATCGGTGA
257 CCAAGCT-GGTGTGACCAATCACATCCAACACCATCAACGA
* * *
14365766 TAGATGCTGACCTATTGTTGCCTTGGGATGTTGCCTCAAACACCTCTTTGGTGGGTGCTGGCCCT
1 CAGATGCTGACCTATTGTTGCCTTGGGATGTTACCTCAAACACCTCTTTGGTAGGTGCTGGCCCT
* * ** ** *
14365831 TCAGTGCCCAATGTTGCCTTGAGCTCCTCCTTTGCT-GGTGCTTGGCACTTGAT-CCCTCGAGCA
66 TCAGTGCCCGATGTTGCCTTGAGCTCCTCC-TTGGTAGGTGCTTGGTGCTTGATCCCCTAAAAC-
* * * * *
14365894 TTGTTTTGGTCCTTGG-CTGGTGCTGCCAATCATGTCCACCACCATCGATGGCAGATGTTGGCCC
129 CTCTTTT-GTCCTTGGTC-GGTGCGGCCAATCACGTCCACCACCATCGATGGTAGATGTTGGCCC
* * * * **
14365958 ATTGTTACCCCAGGATGTTGCCTTGGATGCCATTAGGATGCTGGCCCATTG
192 ATTATTACCTCAAGATGTTGCCTTAGACACCATTAGGATGCTGG-CCATTG
14366009 ACAATGTCTA
Statistics
Matches: 431, Mismatches: 94, Indels: 30
0.78 0.17 0.05
Matches are distributed among these distances:
295 43 0.10
296 141 0.33
297 25 0.06
298 213 0.49
299 9 0.02
ACGTcount: A:0.20, C:0.27, G:0.23, T:0.30
Consensus pattern (296 bp):
CAGATGCTGACCTATTGTTGCCTTGGGATGTTACCTCAAACACCTCTTTGGTAGGTGCTGGCCCT
TCAGTGCCCGATGTTGCCTTGAGCTCCTCCTTGGTAGGTGCTTGGTGCTTGATCCCCTAAAACCT
CTTTTGTCCTTGGTCGGTGCGGCCAATCACGTCCACCACCATCGATGGTAGATGTTGGCCCATTA
TTACCTCAAGATGTTGCCTTAGACACCATTAGGATGCTGGCCATTGGCAACAGCATCTAGCCCAA
GCTGGTGTGACCAATCACATCCAACACCATCAACGA
Found at i:14366208 original size:295 final size:297
Alignment explanation
Indices: 14365619--14366285 Score: 717
Period size: 295 Copynumber: 2.2 Consensus size: 297
14365609 TGGTCGATGG
* * * * *
14365619 GGCCAATCACGTCCACCACAATCGATGGTAGATGTTGGCCCATTATTACCTCAAGATGTTGCCTT
1 GGCCAATCATGTCCACCACCATCGATGGTAGATGTTGGCCCATTGTTACCCCAGGATGTTGCCTT
* * *
14365684 AGACACCATTAGGATGCTGGCCTATTGGCACAGCATCTGGCACTTGGCTAGGGTGACCAATCGCA
66 AGACACCATTAGGATGCTGGCCCATTGACACAG-ATCTAGCACTTGGCTAGGGTGACCAATCGCA
** * * * * *
14365749 TCCAACACCATCGGTGATAGATGCTGACCTATTGTTGCCTTGGGATGTTGCCTCAAACACCTCTT
130 TCCAACACCATCAATGATAGATGATGACCTATTGATGCCATGAGATGTTGCCTCAAACACCTCCT
* * * * * * *** * *
14365814 TGGTGGGTGCTGGCCCTTCAGTGCCCAATGTTGCCTTGAGCTCCTCCTTTGCTGGTGCTTGGCAC
195 CGATGGGTGCTGGCCCTTCAGTGCCCAATGTAGCCTCGAGCTCCTCCATGGAAAGTGCCTAGCAC
* * *
14365879 TTGATCCCTCGAGCATTGTTTTGGTCCTTGGCTGGTGCT
260 TTGATCCCTCGAGCACTGTTTTGGTCATTGGCTGGAG-T
*
14365918 -GCCAATCATGTCCACCACCATCGATGGCAGATGTTGGCCCATTGTTACCCCAGGATGTTGCCTT
1 GGCCAATCATGTCCACCACCATCGATGGTAGATGTTGGCCCATTGTTACCCCAGGATGTTGCCTT
* **
14365982 GGATGCCATTAGGATGCTGGCCCATTGACA-ATG-TCTAGC-CTTTGGCT--GGTGTAGCCAA-C
66 AGACACCATTAGGATGCTGGCCCATTGACACA-GATCTAGCAC-TTGGCTAGGGTG-A-CCAATC
* * * * **
14366041 -CATGTCCAACACCATCAATGGTAGATGATGGCTTGTTGATGCCATGAG-TGTTGCCTCGGACAC
127 GCA--TCCAACACCATCAATGATAGATGATGACCTATTGATGCCATGAGATGTTGCCTCAAACAC
* ** *
14366104 CTCCTCGATGGGTGTTGGCCCTTCAGTGCCTGATGTAGCCTCGCGCTCCTCCATGGAAAGTGCCT
190 CTCCTCGATGGGTGCTGGCCCTTCAGTGCCCAATGTAGCCTCGAGCTCCTCCATGGAAAGTGCCT
*
14366169 AGCACTTGATCCCTTGAGCACCT-TTTTGGTCATTGGCTGGAGT
255 AGCACTTGATCCCTCGAGCA-CTGTTTTGGTCATTGGCTGGAGT
* * * * * *
14366212 GGCCAATCATGTCCACCACCATC-AGTGGTAAATGTTAGCCCGTTGTTACCCTAGGATATTACCT
1 GGCCAATCATGTCCACCACCATCGA-TGGTAGATGTTGGCCCATTGTTACCCCAGGATGTTGCCT
14366276 TAGACACCAT
65 TAGACACCAT
14366286 CAAAAAGCTG
Statistics
Matches: 305, Mismatches: 54, Indels: 22
0.80 0.14 0.06
Matches are distributed among these distances:
294 8 0.03
295 162 0.53
296 50 0.16
297 1 0.00
298 84 0.28
ACGTcount: A:0.19, C:0.27, G:0.25, T:0.29
Consensus pattern (297 bp):
GGCCAATCATGTCCACCACCATCGATGGTAGATGTTGGCCCATTGTTACCCCAGGATGTTGCCTT
AGACACCATTAGGATGCTGGCCCATTGACACAGATCTAGCACTTGGCTAGGGTGACCAATCGCAT
CCAACACCATCAATGATAGATGATGACCTATTGATGCCATGAGATGTTGCCTCAAACACCTCCTC
GATGGGTGCTGGCCCTTCAGTGCCCAATGTAGCCTCGAGCTCCTCCATGGAAAGTGCCTAGCACT
TGATCCCTCGAGCACTGTTTTGGTCATTGGCTGGAGT
Found at i:14366390 original size:295 final size:294
Alignment explanation
Indices: 14365726--14366419 Score: 665
Period size: 295 Copynumber: 2.4 Consensus size: 294
14365716 GCATCTGGCA
* * * *
14365726 CTTGGCTAGG-GTGACCAATCGCATCCAACACCATCGGTGATAGATGCTGACCTATTGTTGC-CT
1 CTTGGCT-GGTGTGACCAATAGCGTCCAACACCATCGGTGGTAGATGCTGGCC-ATTGTTGCTC-
* ** * * * * * *
14365789 TGGGATGTTGCCTCAAACACCTCTTTGGTGGGTGCTGGCCCTTCAGTGCCCAATGTTGCCTTGAG
63 TAGGATGTTGCCTCGGACACCTCCTCGATGGGTGTTGGCCCTTCAGTGCCCAATGTAGCCTCGAG
* * *** * * * * *
14365854 CTCCTCCTTTGCTGGTGCTTGGCACTTGATCCCTCGAGCATTGTTTTGGTCCTTGGCTGGTGCTG
128 CTCCTCCATGGAAAGTGCCTAGCACTTGATCCCTCGAGCACTGTTTTGGTCATTGGCTGGAGCTG
* * * * *
14365919 CCAATCATGTCCACCACCATCGATGGCAGATGTTGGCCCATTGTTACCCCAGGATGTTGCCTTGG
193 CCAATCATGTCCACCACCATCGATGGCAAATGTTAGCCCATTGTTACCCCAGGATATTACCTTAG
** * ** * * *
14365984 ATGCCATTAGGATGCTGGCCCATTGACAATGTCTAGC
258 ACACCATCAAAAAGCTGGCCCATCGACAATGTCTAAC
* * ** * *
14366021 CTTTGGCTGGTGT-AGCCAACCA-TGTCCAACACCATCAATGGTAGATGATGG-C-TTGTTGATG
1 C-TTGGCTGGTGTGA-CCAA-TAGCGTCCAACACCATCGGTGGTAGATGCTGGCCATTGTTGCT-
* * **
14366082 CCATGAGTGTTGCCTCGGACACCTCCTCGATGGGTGTTGGCCCTTCAGTGCCTGATGTAGCCTCG
62 CTAGGA-TGTTGCCTCGGACACCTCCTCGATGGGTGTTGGCCCTTCAGTGCCCAATGTAGCCTCG
* *
14366147 CGCTCCTCCATGGAAAGTGCCTAGCACTTGATCCCTTGAGCACCT-TTTTGGTCATTGGCTGGAG
126 AGCTCCTCCATGGAAAGTGCCTAGCACTTGATCCCTCGAGCA-CTGTTTTGGTCATTGGCTGGAG
* * *
14366211 -TGGCCAATCATGTCCACCACCATC-AGTGGTAAATGTTAGCCCGTTGTTACCCTAGGATATTAC
190 CT-GCCAATCATGTCCACCACCATCGA-TGGCAAATGTTAGCCCATTGTTACCCCAGGATATTAC
*
14366274 CTTAGACACCATCAAAAAGCTGGCCCATCGATAGCAT-T-TAAC
253 CTTAGACACCATCAAAAAGCTGGCCCATCGACA--ATGTCTAAC
*
14366316 CTTGGCTGGTGTGACTAATAGCGTCCAACACCATCGGTGGTAGATGCTGGTCCATTGTTGCTCTA
1 CTTGGCTGGTGTGACCAATAGCGTCCAACACCATCGGTGGTAGATGCTGG-CCATTGTTGCTCTA
* * *
14366381 GGATGTTGCCACGGACACCT-GTCTAGTGGGTGTTGGCCC
65 GGATGTTGCCTCGGACACCTCCTCGA-TGGGTGTTGGCCC
14366420 ATCGATGCTT
Statistics
Matches: 317, Mismatches: 64, Indels: 36
0.76 0.15 0.09
Matches are distributed among these distances:
293 7 0.02
294 46 0.15
295 214 0.68
296 41 0.13
297 9 0.03
ACGTcount: A:0.19, C:0.27, G:0.26, T:0.29
Consensus pattern (294 bp):
CTTGGCTGGTGTGACCAATAGCGTCCAACACCATCGGTGGTAGATGCTGGCCATTGTTGCTCTAG
GATGTTGCCTCGGACACCTCCTCGATGGGTGTTGGCCCTTCAGTGCCCAATGTAGCCTCGAGCTC
CTCCATGGAAAGTGCCTAGCACTTGATCCCTCGAGCACTGTTTTGGTCATTGGCTGGAGCTGCCA
ATCATGTCCACCACCATCGATGGCAAATGTTAGCCCATTGTTACCCCAGGATATTACCTTAGACA
CCATCAAAAAGCTGGCCCATCGACAATGTCTAAC
Found at i:14374010 original size:51 final size:51
Alignment explanation
Indices: 14373839--14373992 Score: 227
Period size: 51 Copynumber: 3.0 Consensus size: 51
14373829 CGAAGGTAGA
* * * *
14373839 TGCTAGCCCATTGTTACCCCGGGATGTTGCCTCAAACACCTCCTTGATGGG
1 TGCTAGCCCATTGTTGCCCCGGGATGTTGCCTCAGACACCTCCCTGGTGGG
* * *
14373890 TGGTAACCCATTGTTGCCCCGGGATGTTGCCTCAGACACCTCTCTGGTGGG
1 TGCTAGCCCATTGTTGCCCCGGGATGTTGCCTCAGACACCTCCCTGGTGGG
* *
14373941 TGCTAGCCCATTGTTGCCCTGGGATGTTACCTCAGACACCTCCCTGGTGGG
1 TGCTAGCCCATTGTTGCCCCGGGATGTTGCCTCAGACACCTCCCTGGTGGG
14373992 T
1 T
14373993 ATTAGCCCTT
Statistics
Matches: 91, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
51 91 1.00
ACGTcount: A:0.15, C:0.31, G:0.27, T:0.28
Consensus pattern (51 bp):
TGCTAGCCCATTGTTGCCCCGGGATGTTGCCTCAGACACCTCCCTGGTGGG
Found at i:14387501 original size:592 final size:579
Alignment explanation
Indices: 14386069--14387676 Score: 1447
Period size: 592 Copynumber: 2.7 Consensus size: 579
14386059 TCAATGCCTA
* * * * * * * *
14386069 ATGTTGCCTCAAGCTCTTTCTTGGTGAGTGCCTAGTGCTTGATCCCCTGAACATCTCTTTGGTCT
1 ATGTTGCCTCAAGCTC-CTCTTAG-GAGTGCTTGGTACTTGATCCCCAGAACACCTCTTTGGTCC
* * * * ** *
14386134 TTGGTTGGTGTGGCCAATCACATCCACCACTATCAGCAGTAGATGCTAGCCTGTTGTTACCTCAG
64 TTAGCTGGTGTGGCCAATCACATCCACCACCATTAGTGGTAGATGCTAGCCTGTTGTTGCCTCAG
* * *
14386199 GATGCTACCTCAGACACCATCAGGATGTTGGCCCATTGATAGCATCTGGCCTTTGGTTGGAGTAG
129 GATGTTACCTCAGACACCATCAAGATGTTGG-CCATTGATAGCATCTGGCCTTTGGTTGGTGTAG
* * * * * * *
14386264 CCAATTGCATCCAACACCATTGGTGGTAGATGCCGGCCCATTGTTACCACGGGATGTTGCCTTAG
193 CCAA-TGCATCCAACACCATTGGTGGTAGATGCTGGCCTATTGTTACCCCGTGAAGTTGCCTCAA
* * * * * *
14386329 GCACCTCTCTGGTGGGTGCTAGCCCCTCGATGC-TCGATGTTGCCTCAAGCT-CTCCCTTGGCAA
257 ACACCTCTCTGGTGGGTGTTGGCCCCTCAATGCTTCGATGTTGCCTCGAGCTCCT-CCTTAGCAA
* * ** *** *
14386392 GTGCTTAGTGCTTGATCCCCTAAACACCTCTTTGGTCTTTGGTTGGTATGGCCAATAGCATCCAC
321 GTGCCTAGTGCTTGATCCCCCAAACACCTCTTTGGTC-TTGGCCGGTGCAGCCAATCGCATCCAC
* * * *
14386457 CACTATCGA-GGATAGATGCTAGCCCATTGTTACCCCT-AGATGTTGCCTCGGACACCATTGAGA
385 CACCATCGATGG-CAGATGCTAGCCCATTGTTA-CCCTAAGATGTTGCATCGGACACCATCGAGA
* * *
14386520 TGCAGACCATTGTTGTCCTTTGGCTAGTGTAGCCAATCTCGTCCAACACCATCAATGGTAAATGC
448 TGCAGACCATCGTAGTCCCTTGGCTAGTGTAGCCAATCTCGTCCAACACCATCAATGGTAAATGC
* * *
14386585 TAGCCCGTTGTTGCCTTGAGATGTTGACTTGGACACCTCCCTAGTGGGTGCTGGCCCCTAGGTCC
513 TAGCCCGTTGTTGCCTTGAGATGTTGACTCGGACACCTCCCTAGTAGGTGCTGGCCCCTAGATCC
14386650 CTG
578 C-G
* * * *
14386653 ATGTTGCCTCAAGCTCCTC-TATGGTAGGTG-TGGGGTTCTTCATCCCCAGAACACCTCATTGGT
1 ATGTTGCCTCAAGCTCCTCTTA-GG-A-GTGCT-TGGTACTTGATCCCCAGAACACCTCTTTGGT
* ** * * * * *
14386716 CCTTAGCTAGTGCAGCCAATCACGTCTACCACCA-TCGATGGTAGATGTTAGCCTATTGTTGGCC
62 CCTTAGCTGGTGTGGCCAATCACATCCACCACCATTAG-TGGTAGATGCTAGCCTGTTGTT-GCC
* * * *** * ** *
14386780 -CAAGATGTTACCTCAAACACTATC-AGAATACGGGCCCA-TCATCAGTGTTTGGCCTTTGGTTG
125 TCAGGATGTTACCTCAGACACCATCAAG-ATGTTGG-CCATTGAT-AGCATCTGGCCTTTGGTTG
* ** * ** * * * *
14386842 GTGTTGCCAAT-CATGTCCAACACCATCAGTGGTTGATGCTAACCTATTTTTGCCCTGTGACGTT
187 GTGTAGCCAATGCA--TCCAACACCATTGGTGGTAGATGCTGGCCTATTGTTACCCCGTGAAGTT
* ** *
14386906 GCCTCAAACACCTCTTTGGTGGGTGTTGGCCTTTCAATGCTTCGATGTTGCCTCGAGTTCCTCCT
250 GCCTCAAACACCTCTCTGGTGGGTGTTGGCCCCTCAATGCTTCGATGTTGCCTCGAGCTCCTCCT
** * * ** * *
14386971 TAGTTAGTGCCTGGTGCTTGATCCCCCAAACACCTCATCAGTGCTTGACGGGTGCAGCCAATCGC
315 TAGCAAGTGCCTAGTGCTTGATCCCCCAAACACCTCTTTGGT-CTTGGCCGGTGCAGCCAATCGC
*
14387036 ATCCACCACCATCGATGGCAGATGCTAGCCCATTGTTACCCTAAGATGTTGCATTGGACACCATC
379 ATCCACCACCATCGATGGCAGATGCTAGCCCATTGTTACCCTAAGATGTTGCATCGGACACCATC
* *
14387101 GGGATGCTA-ACCTATCGATAGCATCTAGCACTTGGCTAGTGTAG-TAATCAT-GTCCAACACCA
444 GAGATGC-AGACC-ATCG-TAG--TC---C-CTTGGCTAGTGTAGCCAATC-TCGTCCAACACCA
* ** * * **
14387163 TCGATGGTAAATGCTAGCTTGTTGTTGCCTTGGGATGTTGCCTCGGACACCT-TTTAAGTAGGTG
499 TCAATGGTAAATGCTAGCCCGTTGTTGCCTTGAGATGTTGACTCGGACACCTCCCT-AGTAGGTG
* * *
14387227 TTGGCTCCTCGATGCTCC-
563 CTGGCCCCTAGAT-C-CCG
*
14387245 ATGTTGCCTCAAGCTCCTCCTTAGCGAGTGCTTGGCACTTGATCCCTC-GAACACCTCTTTGGTC
1 ATGTTGCCTCAAGCTCCT-CTTAG-GAGTGCTTGGTACTTGATCCC-CAGAACACCTCTTTGGTC
*
14387309 CTTAGCTGGTGTGGCCAATCACATCCACCACCATTAGTGGTAGATGCTGGCCTGTTGTTGCCTCA
63 CTTAGCTGGTGTGGCCAATCACATCCACCACCATTAGTGGTAGATGCTAGCCTGTTGTTGCCTCA
* ** * * * **
14387374 GGATGTTACCTCAGACACCATCAAGATGTTGGCTCGTTGATAGCATCTAACCCTTAGCTATTGTA
128 GGATGTTACCTCAGACACCATCAAGATGTTGGC-CATTGATAGCATCTGGCCTTTGGTTGGTGTA
* * * * * *
14387439 ACCAATGGCATCTAACACCATTGGTGATAGATGCTGGCCTGTTGTTACCCCATGAAGTTGCCTCC
192 GCCAAT-GCATCCAACACCATTGGTGGTAGATGCTGGCCTATTGTTACCCCGTGAAGTTGCCTCA
*** * *
14387504 AACACCTCTCTAACGGGTGTTGGCCCCTCGAA-GCTT-GATGTTGCCTTGAGCTCCTCCTTAGCG
256 AACACCTCTCTGGTGGGTGTTGGCCCCTC-AATGCTTCGATGTTGCCTCGAGCTCCTCCTTAGCA
* ** * * *
14387567 GGTGCCTAGCACTTGATCCCCCGAACACCCCTTTGGTCCTTGGCCGGTGCAACCAATCGCATCCA
320 AGTGCCTAGTGCTTGATCCCCCAAACACCTCTTTGGT-CTTGGCCGGTGCAGCCAATCGCATCCA
* * ** * *
14387632 CCACCAT-TAGTGGCAAATGCTAGCTTATTGTTACCCCAGGATGTT
384 CCACCATCGA-TGGCAGATGCTAGCCCATTGTTACCCTAAGATGTT
14387677 ACCTCAAACA
Statistics
Matches: 802, Mismatches: 180, Indels: 77
0.76 0.17 0.07
Matches are distributed among these distances:
582 4 0.00
583 10 0.01
584 209 0.26
585 129 0.16
586 9 0.01
587 2 0.00
589 2 0.00
590 1 0.00
591 117 0.15
592 283 0.35
593 29 0.04
594 7 0.01
ACGTcount: A:0.20, C:0.28, G:0.23, T:0.29
Consensus pattern (579 bp):
ATGTTGCCTCAAGCTCCTCTTAGGAGTGCTTGGTACTTGATCCCCAGAACACCTCTTTGGTCCTT
AGCTGGTGTGGCCAATCACATCCACCACCATTAGTGGTAGATGCTAGCCTGTTGTTGCCTCAGGA
TGTTACCTCAGACACCATCAAGATGTTGGCCATTGATAGCATCTGGCCTTTGGTTGGTGTAGCCA
ATGCATCCAACACCATTGGTGGTAGATGCTGGCCTATTGTTACCCCGTGAAGTTGCCTCAAACAC
CTCTCTGGTGGGTGTTGGCCCCTCAATGCTTCGATGTTGCCTCGAGCTCCTCCTTAGCAAGTGCC
TAGTGCTTGATCCCCCAAACACCTCTTTGGTCTTGGCCGGTGCAGCCAATCGCATCCACCACCAT
CGATGGCAGATGCTAGCCCATTGTTACCCTAAGATGTTGCATCGGACACCATCGAGATGCAGACC
ATCGTAGTCCCTTGGCTAGTGTAGCCAATCTCGTCCAACACCATCAATGGTAAATGCTAGCCCGT
TGTTGCCTTGAGATGTTGACTCGGACACCTCCCTAGTAGGTGCTGGCCCCTAGATCCCG
Found at i:14387751 original size:296 final size:295
Alignment explanation
Indices: 14386694--14387754 Score: 864
Period size: 296 Copynumber: 3.6 Consensus size: 295
14386684 GGGGTTCTTC
* * * ** * * * * *
14386694 ATCCCCAGAACACCTCATTGGTCCTTAGCTAGTGCAGCCAATCACGTCTACCACCA-TCGATGGT
1 ATCCCCCGAACACCTCTTTGGTCCTTGGCCGGTGCAGCCAATCGCATCCACCACCATTAG-TGGC
* ** * * * *
14386758 AGATGTTAGCCTATTGTTGGCCCAAGATGTTACCTCAAACACTATCAGAATACGGGCCCATC-AT
65 AGATGCTAGCCTATTGTTACCCCAAGATGTTACCTCAAACACCATCAGGATGCTGGCCCATCGAT
** * * * * * * * * * *
14386822 CAGTGTTTGGCCTTTGGTTGGTGTTGCCAATCATGTCCAACACCATCAGTGGTTGATGCTAACCT
130 -AGCATCTAGCCCTTGGTTTGTATAGCCAATCATGTCCAACACCATCGGTGATAGATGCTAGCCT
* * * ** **
14386887 ATTTTTGCCCTGTGACGTTGCCTCAAACACCTCTTTGGTGGGTGTTGGCCTTTC-AATGCTTCGA
194 GTTGTTGCCCTGTGAAGTTGCCTCAAACACCTCTTT-AAGGGTGTTGGCCCCTCGAA-GCTT-GA
* ** **
14386951 TGTTGCCTCGAGTTCCTCCTTAGTTAGTGCCTGGTGCTTG
256 TGTTGCCTCGAGCTCCTCCTTAGCGAGTGCCTGGCACTTG
* * ** * * * *
14386991 ATCCCCCAAACACCTCATCAGTGCTTGACGGGTGCAGCCAATCGCATCCACCACCA-TCGATGGC
1 ATCCCCCGAACACCTCTTTGGTCCTTGGCCGGTGCAGCCAATCGCATCCACCACCATTAG-TGGC
* * * * *** * ** *
14387055 AGATGCTAGCCCATTGTTACCCTAAGATGTTGCATTGGACACCATCGGGATGCTAACCTATCGAT
65 AGATGCTAGCCTATTGTTACCCCAAGATGTTACCTCAAACACCATCAGGATGCTGGCCCATCGAT
* * * * * * * * *
14387120 AGCATCTAGCACTTGGCTAGTGTAG-TAATCATGTCCAACACCATCGATGGTAAATGCTAGCTTG
130 AGCATCTAGCCCTTGGTTTGTATAGCCAATCATGTCCAACACCATCGGTGATAGATGCTAGCCTG
* * * ** * * **
14387184 TTGTTGCCTTGGGATGTTGCCTCGGACACCT-TTTAAGTAGGTGTTGGCTCCTCGATGCTCCATG
195 TTGTTGCCCTGTGAAGTTGCCTCAAACACCTCTTTAAG--GGTGTTGGCCCCTCGAAGCTTGATG
* *
14387248 TTGCCTCAAGCTCCTCCTTAGCGAGTGCTTGGCACTTG
258 TTGCCTCGAGCTCCTCCTTAGCGAGTGCCTGGCACTTG
* * * ** * *
14387286 ATCCCTCGAACACCTCTTTGGTCCTTAGCTGGTGTGGCCAATCACATCCACCACCATTAGTGGTA
1 ATCCCCCGAACACCTCTTTGGTCCTTGGCCGGTGCAGCCAATCGCATCCACCACCATTAGTGGCA
* * * * * * * * * * *
14387351 GATGCTGGCCTGTTGTTGCCTCAGGATGTTACCTCAGACACCATCAAGATGTTGGCTCGTTGATA
66 GATGCTAGCCTATTGTTACCCCAAGATGTTACCTCAAACACCATCAGGATGCTGGCCCATCGATA
* * * * *
14387416 GCATCTAACCCTTAGCTATTGTA-A-CCAATGGCA--TCTAACACCATTGGTGATAGATGCTGGC
131 GCATCTAGCCCTT-GGT-TTGTATAGCCAAT--CATGTCCAACACCATCGGTGATAGATGCTAGC
* ** * *
14387477 CTGTTGTTACCCCATGAAGTTGCCTCCAACACCTCTCTAACGGGTGTTGGCCCCTCGAAGCTTGA
192 CTGTTGTTGCCCTGTGAAGTTGCCTCAAACACCTCTTTAA-GGGTGTTGGCCCCTCGAAGCTTGA
* * *
14387542 TGTTGCCTTGAGCTCCTCCTTAGCGGGTGCCTAGCACTTG
256 TGTTGCCTCGAGCTCCTCCTTAGCGAGTGCCTGGCACTTG
* *
14387582 ATCCCCCGAACACCCCTTTGGTCCTTGGCCGGTGCAACCAATCGCATCCACCACCATTAGTGGCA
1 ATCCCCCGAACACCTCTTTGGTCCTTGGCCGGTGCAGCCAATCGCATCCACCACCATTAGTGGCA
* * *
14387647 AATGCTAGCTTATTGTTACCCCAGGATGTTACCTCAAACACCATCAGGATGCTGGCCCATCGATA
66 GATGCTAGCCTATTGTTACCCCAAGATGTTACCTCAAACACCATCAGGATGCTGGCCCATCGATA
* * *
14387712 GTAACTAGCCCTTGGTTTGTATAGCCAATCATGTCTAACACCA
131 GCATCTAGCCCTTGGTTTGTATAGCCAATCATGTCCAACACCA
14387755 CTGGCAGTAG
Statistics
Matches: 588, Mismatches: 160, Indels: 33
0.75 0.20 0.04
Matches are distributed among these distances:
294 8 0.01
295 144 0.24
296 312 0.53
297 119 0.20
298 5 0.01
ACGTcount: A:0.21, C:0.28, G:0.22, T:0.29
Consensus pattern (295 bp):
ATCCCCCGAACACCTCTTTGGTCCTTGGCCGGTGCAGCCAATCGCATCCACCACCATTAGTGGCA
GATGCTAGCCTATTGTTACCCCAAGATGTTACCTCAAACACCATCAGGATGCTGGCCCATCGATA
GCATCTAGCCCTTGGTTTGTATAGCCAATCATGTCCAACACCATCGGTGATAGATGCTAGCCTGT
TGTTGCCCTGTGAAGTTGCCTCAAACACCTCTTTAAGGGTGTTGGCCCCTCGAAGCTTGATGTTG
CCTCGAGCTCCTCCTTAGCGAGTGCCTGGCACTTG
Found at i:14391017 original size:295 final size:297
Alignment explanation
Indices: 14390422--14391050 Score: 637
Period size: 295 Copynumber: 2.1 Consensus size: 297
14390412 ATAACATCTG
* * * * * *
14390422 GCCCTTGGTTGGTGTGATCAATCACATCCAACATCATTGATGGTAGATGCTGGCCTATTATTGCC
1 GCCCTTGGTTGGTGTGACCAATCACGTCTAACACCATTAACGGTAGATGCTGGCCTATTATTGCC
* *
14390487 CTAAGATGTTGCCTTGGACACCTCTCTAACAAGTGCTAGCCCTTTAGTGCCTCGATGTTGCCTCG
66 CTAAGATGTTGCCTTGGACACCTCCCTAACAAGTGCTAGCCCCTTAGTGCCTCGATGTTGCCTCG
* * * ** * *
14390552 AGCTCTTCCTTGGTGGGTGCCTACAACTTGATCCCCTGAACACCTCTTTTGTCTTTAGCTGGTGT
131 AGCTCTTCCTTGGTAGGTGCCTACAACTTGATCCCCTGAAAACCTCTTTGGTCCCTAGCTAGTGC
* * * * *
14390617 GGCCAATCACGTCCACCACTAACGATGGCAGATGGTGGCCCATTGTTGCCTAGAGATATTGCCTA
196 GGCCAAACACGTCCACCACTAACGATGACAGATGCTGGCCCATTGTTCCCTAGAGATATTACCTA
* *
14390682 GAACACCATTGGGATGCTAGCCCATTGATAGTGTTTA
261 GAACACCATCGGGATGCTAACCCATTGATAGTGTTTA
* *
14390719 GCCCTTGGTTGGTGTGACCAATCACGTCTAACACCATTAACGGTAGATGTTGGGCC-GTTATTGC
1 GCCCTTGGTTGGTGTGACCAATCACGTCTAACACCATTAACGGTAGATGCT-GGCCTATTATTGC
* * * ** * * *
14390783 CTTGAGATGTTGCCTTGGACACTTCCCTAGTAGGTG-TTGCCCACTTGGTG-CT-GATGTTGCCT
65 CCTAAGATGTTGCCTTGGACACCTCCCTAACAAGTGCTAGCCC-CTTAGTGCCTCGATGTTGCCT
* * * **** * *
14390845 TGAGCTTTTTCTTGGTAGGTGCCTGGTGCTTGAT-CCCTCGAAAACTTCTTTGGTCCCTGGCTAG
129 CGAGCTCTTCCTTGGTAGGTGCCTACAACTTGATCCCCT-GAAAACCTCTTTGGTCCCTAGCTAG
* * * * *
14390909 TGCGGCCAAACATGTCCACCA-TCATCGATGACAGATGCTGGGCCGTTGTTACCCTAG-GATGTT
193 TGCGGCCAAACACGTCCACCACT-AACGATGACAGATGCTGGCCCATTGTT-CCCTAGAGATATT
* * * ***
14390972 ACCTCGGACACTATCGGGATGCTAACTTGTTGATAGCT-TTTA
256 ACCTAGAACACCATCGGGATGCTAACCCATTGATAG-TGTTTA
** * *
14391014 GCCCTTGACTGGTGTG-CCAATCATGTCTTACACCATT
1 GCCCTTGGTTGGTGTGACCAATCACGTCTAACACCATT
14391051 GGTCCTTTGG
Statistics
Matches: 270, Mismatches: 56, Indels: 15
0.79 0.16 0.04
Matches are distributed among these distances:
294 24 0.09
295 144 0.53
296 13 0.05
297 85 0.31
298 4 0.01
ACGTcount: A:0.19, C:0.25, G:0.24, T:0.31
Consensus pattern (297 bp):
GCCCTTGGTTGGTGTGACCAATCACGTCTAACACCATTAACGGTAGATGCTGGCCTATTATTGCC
CTAAGATGTTGCCTTGGACACCTCCCTAACAAGTGCTAGCCCCTTAGTGCCTCGATGTTGCCTCG
AGCTCTTCCTTGGTAGGTGCCTACAACTTGATCCCCTGAAAACCTCTTTGGTCCCTAGCTAGTGC
GGCCAAACACGTCCACCACTAACGATGACAGATGCTGGCCCATTGTTCCCTAGAGATATTACCTA
GAACACCATCGGGATGCTAACCCATTGATAGTGTTTA
Found at i:14394637 original size:296 final size:292
Alignment explanation
Indices: 14394067--14394711 Score: 661
Period size: 296 Copynumber: 2.2 Consensus size: 292
14394057 CCCGATGCTA
* * *
14394067 CCTCAAGTTCTTCCTTGGCTAGG-GCTTGGCACTTGATCCCTCGAACACCTCTTT-GTCTTAGGC
1 CCTCAAGCTCATCCTTGG-T-GGTGCCTGGCACTTGATCCCTCGAACACCTCTTTGGTCTTAGGC
* * *** ** * *
14394130 TAGTGTGGCCAATCGCATCCACCACTATCAGTAGATGTTGGCTTGTTATTGCCTTACGATGTTGC
64 TAGTGTGGCCAATCACATCCACCACCATCAGTAGATGTTGGCCCATTATTGCCCCAAGATGTTAC
* *
14394195 CTTAGACAACATCAAGATGCTGACCCATCAACTGCATCTGGCCCTTGGCTAGTGTGGCCAATCAC
129 CTCAGACAACATCAAGATGCTGACCCATCAACTACATCTGGCCCTTGGCTAGTGTGGCCAATCAC
* * * * *
14394260 GTCTAACACCATCGATGATAGATGCTGGCCCATTATTGCCTTGAAAAGTTACCTCGAACACCTCC
194 GTCCAACACCATCGAGGATAGATGCTAGCCCATTATTGCCTAGAAAACTTACCTCGAACACCTCC
** *
14394325 CTAGTGGGTACTGGCCTCTCGGTGCCTAATGTTG
259 CTAGTGGGTACTGGCCTCTCAATGCCTAATGTTC
*** * * *
14394359 CCTTGGGCTCTTCCTTGGTGTTTGCCTGGCACTTGATCCCCCGAACACCTCTTTGGTCATT-GGC
1 CCTCAAGCTCATCCTTGGTG-GTGCCTGGCACTTGATCCCTCGAACACCTCTTTGGTC-TTAGGC
* * *
14394423 TGGTGTGGCCAATCACGTCCACCACCATCAGTGGTAGATGTTGGCCCATTGTTGCCCCAAGATGT
64 TAGTGTGGCCAATCACATCCACCACCATCA---GTAGATGTTGGCCCATTATTGCCCCAAGATGT
* * * * * * *
14394488 TACCTCGGACACCATCAGGATGCTGGCCCATCAA-TAACATTTGGCCTTTGGCTAGTGTGTCCAA
126 TACCTCAGACAACATCAAGATGCTGACCCATCAACT-ACATCTGGCCCTTGGCTAGTGTGGCCAA
* * * * * * * * *
14394552 TCATGTCCAACACCATCGGGGGTAGATGCTAGCCTATTGTTGCCCTAG-GATCTTGCCTCGGACA
190 TCACGTCCAACACCATCGAGGATAGATGCTAGCCCATTATTG-CCTAGAAAACTTACCTCGAACA
*** * * * *
14394616 CCTTTTTGGTGGGTGCTGGCCTCTCAATGCTTGATGTTC
254 CCTCCCTAGTGGGTACTGGCCTCTCAATGCCTAATGTTC
* * *
14394655 CCTCAAGCTCATCTTTGGTGGTGCCTGGCACTTGATCCCTTGACCACCTCTTTGGTC
1 CCTCAAGCTCATCCTTGGTGGTGCCTGGCACTTGATCCCTCGAACACCTCTTTGGTC
14394712 CTTATTGGCA
Statistics
Matches: 283, Mismatches: 61, Indels: 15
0.79 0.17 0.04
Matches are distributed among these distances:
290 1 0.00
291 1 0.00
292 43 0.15
293 32 0.11
294 2 0.01
295 34 0.12
296 166 0.59
297 4 0.01
ACGTcount: A:0.18, C:0.29, G:0.23, T:0.30
Consensus pattern (292 bp):
CCTCAAGCTCATCCTTGGTGGTGCCTGGCACTTGATCCCTCGAACACCTCTTTGGTCTTAGGCTA
GTGTGGCCAATCACATCCACCACCATCAGTAGATGTTGGCCCATTATTGCCCCAAGATGTTACCT
CAGACAACATCAAGATGCTGACCCATCAACTACATCTGGCCCTTGGCTAGTGTGGCCAATCACGT
CCAACACCATCGAGGATAGATGCTAGCCCATTATTGCCTAGAAAACTTACCTCGAACACCTCCCT
AGTGGGTACTGGCCTCTCAATGCCTAATGTTC
Found at i:14397081 original size:265 final size:264
Alignment explanation
Indices: 14396589--14397082 Score: 591
Period size: 265 Copynumber: 1.9 Consensus size: 264
14396579 TAATGTTACC
* * *** * * *
14396589 TTGGTTCTTGGCTGGTGTGGCCAATCACGTTCACCAACATCAATGGCAGATGCTGGCCCATTGTT
1 TTGGTCCTTGGCTGGTGTAGCCAATCACGTTCACCAACATCAACAACAGATGCTAGACCAATGTT
* * * *
14396654 GCCAAGGGATGTTACCTCAGACACCATCGGGATGCTGGCCCATTGACAGTGTTTGTCCTTTAGCT
66 GCCAA-GGATGTTACCTCAGACACCATCGGGATGCTGGCCCATCGACAGTGTCTGGCCCTTAGCT
* * * *
14396719 GGTGCGGCCAATCATATCCAACACAATTGGTGGCAGATGCTAGCTCATTGTTACCCCAAGATGTT
130 GGTGCAGCCAATCATATCCAACACAATTGGCGACAGATGCTAGCCCATTGTTACCCCAAGATGTT
* * * *
14396784 GCCTCAAACACTTTTTTGGTAGGTGCTGGCCCTTGGCGAGTACTTGACACTTGATCCCCCGAACA
195 GCCTCAAACACCTCTCTAGTAGGTGCTGGCCCTTGGCGAGTACTTGACACTTGATCCCCCGAACA
14396849 CCTCT
260 CCTCT
* *
14396854 TTGGTCCTTGGCTGGTGTAGCCAATCACG-TCTACCACCATCGACAACAGATGCTAGACCAATGT
1 TTGGTCCTTGGCTGGTGTAGCCAATCACGTTC-ACCAACATCAACAACAGATGCTAGACCAATGT
** ** * *
14396918 TGCCCCAA-GATGTTACCTTGGATGCCATTGGGATGTTGGCCCATCGACAGTGTCTGGCCCTTAG
65 TG--CCAAGGATGTTACCTCAGACACCATCGGGATGCTGGCCCATCGACAGTGTCTGGCCCTTAG
* * * *
14396982 CTGGTGCAGCCAATTGC-T-TCCAACACCATTGGCGATAGATGCTAGCCCATTGTTGCCCCAGGA
128 CTGGTGCAGCCAA-T-CATATCCAACACAATTGGCGACAGATGCTAGCCCATTGTTACCCCAAGA
* * *
14397045 TGTTGCCTCAGACACCTCTCTAGTGGGTGTTGGCCCTT
191 TGTTGCCTCAAACACCTCTCTAGTAGGTGCTGGCCCTT
14397083 CAGTGCCTCG
Statistics
Matches: 189, Mismatches: 35, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
264 2 0.01
265 180 0.95
266 2 0.01
267 5 0.03
ACGTcount: A:0.20, C:0.28, G:0.24, T:0.28
Consensus pattern (264 bp):
TTGGTCCTTGGCTGGTGTAGCCAATCACGTTCACCAACATCAACAACAGATGCTAGACCAATGTT
GCCAAGGATGTTACCTCAGACACCATCGGGATGCTGGCCCATCGACAGTGTCTGGCCCTTAGCTG
GTGCAGCCAATCATATCCAACACAATTGGCGACAGATGCTAGCCCATTGTTACCCCAAGATGTTG
CCTCAAACACCTCTCTAGTAGGTGCTGGCCCTTGGCGAGTACTTGACACTTGATCCCCCGAACAC
CTCT
Found at i:14397430 original size:49 final size:48
Alignment explanation
Indices: 14397339--14397434 Score: 108
Period size: 49 Copynumber: 2.0 Consensus size: 48
14397329 TTGCCTTGAG
*
14397339 ATGTTGCCTCGAACACCTTTCTGGTGGGTGCTAGCCCTTTGATGCCCTA
1 ATGTTGCCTCGAACACCTTTCTGGTAGGTGCTAGCCCTTTGAT-CCCTA
* *
14397388 ATGTTGCCTC-AAGCTCCTCTT-TGGTAGGTGCCTAGCGC-TTGATCCCT
1 ATGTTGCCTCGAA-CACCT-TTCTGGTAGGTG-CTAGCCCTTTGATCCCT
14397435 TGAACACCTC
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
48 6 0.15
49 27 0.66
50 8 0.20
ACGTcount: A:0.14, C:0.29, G:0.24, T:0.33
Consensus pattern (48 bp):
ATGTTGCCTCGAACACCTTTCTGGTAGGTGCTAGCCCTTTGATCCCTA
Found at i:14401623 original size:295 final size:292
Alignment explanation
Indices: 14400812--14402401 Score: 940
Period size: 295 Copynumber: 5.4 Consensus size: 292
14400802 TGTCAATTGT
* * * *
14400812 ATCTGGCCCTTAGCTGGTGCGACCAATCATGTCCAACACCATCGATGGTAGATGTTGGCCCATTG
1 ATCTGGCCCTTGGCTGGTGTGACCAATCATATCCAACACCATCGATGGTAGATGCTGGCCCATTG
* * * * * * * * * * *
14400877 TTACCCCAGGTTGTTACCTCAGACACCTCCCTAATGGGTGTTGGCCCTTTGGT-CTCGATATTGC
66 TTGCCCCAAGATGTTACTTCAGACACCTCCCTGATGAGTGCTGGCCCCTTGATGCTCAATAGTGC
* *
14400941 CTCAGGCTCCTCCTTGGTGGGTGCTTGGTGCTTGATCCCTCGAACAACTCTTTTGTCCTTGGCTG
131 CTCA-GCTCCTCCTTGGTGGGTGCCTGGTGCTTGATCCCTCGAACAACTCTTTGGTCCTTGGCTG
* * * * *
14401006 GTGCAGCCAATCGCAACCACCACTATC-GATGGCAGATGTTGGCCCTTGCTACCTCATGATGTTA
195 GTGCA-CCAATCGCATCCACCACTATCAG-TGACAGATGCTGGCCCTTGTTCCCTCA-GATGTTA
14401070 CCTCAGACACCATCAGGATGCCA-GCCCATCGATAGC
257 CCTCAGACACCATCAGGATG-CAGGCCCATCGATAGC
* ** * * * *
14401106 ATCTAGCATTTGGCTAGTGTGACCAATCGTAT-CAACACCATCAATGGTAGATGCTGGCCCGTTG
1 ATCTGGCCCTTGGCTGGTGTGACCAATCATATCCAACACCATCGATGGTAGATGCTGGCCCATTG
* * *
14401170 TTGCCCCAAGATGTTGCTTCAGACACCT-CCTGAT-AGGTGCTAGCCCCTCGATGCTCAAT-GTC
66 TTGCCCCAAGATGTTACTTCAGACACCTCCCTGATGA-GTGCTGGCCCCTTGATGCTCAATAGT-
* * * * *
14401232 ACCTCAAGTTCCTCCTTAGTGGGTGCCTGGTGCTTGATCCCTC-AAAAACCACTTTGG-CCTCTG
129 GCCTC-AGCTCCTCCTTGGTGGGTGCCTGGTGCTTGATCCCTCGAACAA-CTCTTTGGTCCT-TG
* * ** *
14401295 GGTGGTGGGATAAATCGCATCCACCAATATCAGTGACAGATGCTGGCCCATTGTTGCCCTCAGAT
191 GCTGGT-GCACCAATCGCATCCACCACTATCAGTGACAGATGCTGGCCC-TTGTT-CCCTCAGAT
* * *
14401360 GTTGCCACAGACACCATC-GTGATGCAGGCCCATTGATAGC
253 GTTACCTCAGACACCATCAG-GATGCAGGCCCATCGATAGC
* ** * *
14401400 ATCTGGCCCTTGGCTGGTGTGACCAATCATGTCCAACACCATCGACAGTAGATGCTAGCCTATTG
1 ATCTGGCCCTTGGCTGGTGTGACCAATCATATCCAACACCATCGATGGTAGATGCTGGCCCATTG
* * * * * * * **
14401465 TTGCCCTAAGATGTTTCTTCAAACACTTCCCTGGTGAGTGCTGGCCCCTTAATGCCCCTTAGTGC
66 TTGCCCCAAGATGTTACTTCAGACACCTCCCTGATGAGTGCTGGCCCCTTGATGCTCAATAGTGC
* ** * **
14401530 CTCTAGCTCCTCCTTGGCGAATGCCTGATGCTTGATCCC-CGAACATTTCTTTGGTCCTTGGCTG
131 CTC-AGCTCCTCCTTGGTGGGTGCCTGGTGCTTGATCCCTCGAACAACTCTTTGGTCCTTGGCTG
*** * * * *
14401594 GTGTCACCAATCATGTCCATCACTATCAGTGATAGATGCTGGCTCGTTGTTACCC-CAAGAAGTT
195 GTG-CACCAATCGCATCCACCACTATCAGTGACAGATGCTGGC-CCTTGTT-CCCTC-AGATGTT
* *** * *
14401658 ACCTCAGACACCATCAGGATGCTGGCTTGTCAACAGC
256 ACCTCAGACACCATCAGGATGCAGGCCCATCGATAGC
* * * * * * *
14401695 ATTTGGCTCTTGGCTGGTGTGACCAATCGTAACCAACACCATTGATGGTAGATGTTGGCCTATTG
1 ATCTGGCCCTTGGCTGGTGTGACCAATCATATCCAACACCATCGATGGTAGATGCTGGCCCATTG
* * * * * * *** * * *
14401760 CTGCCTCGAGATGTTACCTC-GACACTTCCATGGCAAGTGCTGGTCCC-TCAGTGCCCAAT-GTT
66 TTGCCCCAAGATGTTACTTCAGACACCTCCCTGATGAGTGCTGGCCCCTTGA-TGCTCAATAG-T
* * * * * * * * * * * *
14401822 GGCTCGAGCTCCTCCTCGATGGTTGCTTAGTGCTTGATCCCCCGAACACCTCTTTGTTTCTTAGA
129 GCCTC-AGCTCCTCCTTGGTGGGTGCCTGGTGCTTGATCCCTCGAACAACTCTTTGGTCCTTGGC
* * * ** ** * * **
14401887 TGGTGTGACCAATCGCATCTACCACCATTGGTGGTAGATGCTGGCCTGTTGTTGCCTTGGGATGT
193 TGGTG-CACCAATCGCATCCACCACTATCAGTGACAGATGCTGGCC-CTTGTT-CCCTCAGATGT
* * * *
14401952 TGCCTCAGACACTATTAAGATGCCA-GCCCATCGATAGC
255 TACCTCAGACACCATCAGGATG-CAGGCCCATCGATAGC
* * * * * ** * * * *
14401990 ATCTAGCCCTTAGCTAGTGTGACCTATCACATCCAACATGATCGACGGCAAATGCTAGCCCATTG
1 ATCTGGCCCTTGGCTGGTGTGACCAATCATATCCAACACCATCGATGGTAGATGCTGGCCCATTG
* ** * * * * * * * * * * * * *
14402055 TTGCCTCGGGATGTTGCATAAGACGCTTACTTGGTGGGTGTTGGCCCCTCGGTGCTCGAT-GTTG
66 TTGCCCCAAGATGTTACTTCAGACACCTCCCTGATGAGTGCTGGCCCCTTGATGCTCAATAG-TG
* * ** * * * * * *
14402119 CTTGGAGCTCCTCCTTGACGGGTGCCTAGAGCTTGATCCCCCAAACACCTTTTTGGTCCTTGGCT
130 CCT-CAGCTCCTCCTTGGTGGGTGCCTGGTGCTTGATCCCTCGAACAACTCTTTGGTCCTTGGCT
* * ** * * * * * * * *
14402184 AGTATG-GCCAATCATATCTACCACCAT-AGAT-AGCAGGTACTGGCCTATTATTGCCTGAGGAT
194 -G-GTGCACCAATCGCATCCACCACTATCAG-TGA-CAGATGCTGGCC-CTTGTTCCCTCA-GAT
* ** * *
14402246 GTTGCCTTGGACACCATCAGGATGTTA-TCCCATCGATAGC
253 GTTACCTCAGACACCATCAGGATG-CAGGCCCATCGATAGC
* * * * * ** *
14402286 ATCTGGCTCTTGGCTGCTGTGGCCAA-AATCATCCAACACCATCAATGACAGATGTTGGCCCATT
1 ATCTGGCCCTTGGCTGGTGTGACCAATCAT-ATCCAACACCATCGATGGTAGATGCTGGCCCATT
**** * * * *
14402350 GTTGCCTGGGGATGTTGCCTCAGACACCTCCCT-AGTGGGTGCTAGCCCCTTG
65 GTTGCCCCAAGATGTTACTTCAGACACCTCCCTGA-TGAGTGCTGGCCCCTTG
14402402 GTGCACCAGA
Statistics
Matches: 991, Mismatches: 267, Indels: 74
0.74 0.20 0.06
Matches are distributed among these distances:
292 24 0.02
293 144 0.15
294 156 0.16
295 365 0.37
296 296 0.30
297 4 0.00
298 2 0.00
ACGTcount: A:0.20, C:0.28, G:0.23, T:0.28
Consensus pattern (292 bp):
ATCTGGCCCTTGGCTGGTGTGACCAATCATATCCAACACCATCGATGGTAGATGCTGGCCCATTG
TTGCCCCAAGATGTTACTTCAGACACCTCCCTGATGAGTGCTGGCCCCTTGATGCTCAATAGTGC
CTCAGCTCCTCCTTGGTGGGTGCCTGGTGCTTGATCCCTCGAACAACTCTTTGGTCCTTGGCTGG
TGCACCAATCGCATCCACCACTATCAGTGACAGATGCTGGCCCTTGTTCCCTCAGATGTTACCTC
AGACACCATCAGGATGCAGGCCCATCGATAGC
Found at i:14409475 original size:283 final size:283
Alignment explanation
Indices: 14408966--14409493 Score: 605
Period size: 283 Copynumber: 1.9 Consensus size: 283
14408956 GGCAACATCC
* * **
14408966 TAGGGCAATAATAGGCCAGCATCTACCACCAATGGTGTTGGATGCAATTAGTCGTACCAACCAAA
1 TAGGGCAACAATAGGCCAGCATCTACCACCAATGGTGTTGGATGCAATTAGCCACACCAACCAAA
** * * * *
14409031 GGCCAAATGCTGTCGATGGGCCAGCATCATGATAGTGTTCAAGGCAACATCCCAGGGTAATAATA
66 GGCCAAACACTATCGATGGGCCAGCATCATAATAGTGTTCAAGGCAACATCCCAGGGCAACAATA
* * *
14409096 GGCTAACATTTGCTACCGATGGTGGTGGATGCAATTGGCCACACTAACCAAGGGCCAAAGAGATG
131 GGCTAACATTTGCTACCGATGGTGGTGGATGCAATTGGCCACACCAACCAAAGACCAAAGAGATG
* *
14409161 TTTTAGGGATAAAACTCCAAGCACCCACTAA-GAAGGAGCTCGAGGCAACACCGGGCACTAAGGG
196 TTTTAGGGATAAAACACCAAGCACCCACTAAGGAA-GAGCTCAAGGCAACACCGGGCACTAAGGG
14409225 GCCAACACCCATCATGATGGTGTT
260 GCCAACACCCATCATGATGGTGTT
* **** * * *
14409249 TAGGGCAACAATAGGCCAGCATTTACTGTTAATGGTGTTGGATGCGATTGGCCACACCAACCAAG
1 TAGGGCAACAATAGGCCAGCATCTACCACCAATGGTGTTGGATGCAATTAGCCACACCAACCAAA
* * * * * *
14409314 GGCCAAACATTATCGATGGGCTAGCATCCTAATGGTGTTCGAGGTAACATCCCCA-GGCAACAAT
66 GGCCAAACACTATCGATGGGCCAGCATCATAATAGTGTTCAAGGCAACAT-CCCAGGGCAACAAT
* * ** ** * * * *
14409378 GGGCTAACATCTT-TTGTCGATGGTGGTGGATGTGATTGGCCACACCAGCCAAAGACGATAGAGG
130 AGGCTAACAT-TTGCTACCGATGGTGGTGGATGCAATTGGCCACACCAACCAAAGACCAAAGAGA
* * * *
14409442 TG-TTTAGGGAATCAAGCACCAGGCACTCACTAAGGAAGAGCTCAAGGCAACA
194 TGTTTTAGGG-ATAAAACACCAAGCACCCACTAAGGAAGAGCTCAAGGCAACA
14409494 TCAAGCACCG
Statistics
Matches: 198, Mismatches: 43, Indels: 8
0.80 0.17 0.03
Matches are distributed among these distances:
282 7 0.04
283 182 0.92
284 9 0.05
ACGTcount: A:0.31, C:0.23, G:0.26, T:0.20
Consensus pattern (283 bp):
TAGGGCAACAATAGGCCAGCATCTACCACCAATGGTGTTGGATGCAATTAGCCACACCAACCAAA
GGCCAAACACTATCGATGGGCCAGCATCATAATAGTGTTCAAGGCAACATCCCAGGGCAACAATA
GGCTAACATTTGCTACCGATGGTGGTGGATGCAATTGGCCACACCAACCAAAGACCAAAGAGATG
TTTTAGGGATAAAACACCAAGCACCCACTAAGGAAGAGCTCAAGGCAACACCGGGCACTAAGGGG
CCAACACCCATCATGATGGTGTT
Found at i:14413384 original size:296 final size:295
Alignment explanation
Indices: 14413052--14413753 Score: 693
Period size: 296 Copynumber: 2.4 Consensus size: 295
14413042 ATCGGTTGTC
** * * * *
14413052 GATGGTGGTGGATGTGGTTGGCCACCCCAGCCAAGGACCAAAAAGGTGTTTTAGGGATCAAGCAC
1 GATGGTGGTGGATG-CATTGGTCACACCAGCCAAGGACCAAAGAGGTGTTTTAGGGATCAAGCGC
* * * *
14413117 CAAGCACCCACCAAGGAGGAGCTCGAGGCAACATTGGGCACTGAAAGGCCAGCACCCTCTAGAGA
65 CAGGCACCCACCAAGGAGGAGCTCGAGGCAACATCGGGCACTGAAAGGCCAACACCCACTAGAGA
* * * **
14413182 GTTGTTTGAGGCAACATCTCAAGGTAAAAATGGGCCAA-CATCTATCACT-AATGGTGTTAGATG
130 GCTGTCTGAGGCAACAACTCAAGGTAAAAATGGG-CAAGCATCTA-CACTCAATGGTGTTAGACA
* * * * * *
14413245 CGATTGGCTATACCAGCCAAGGGCCAGACGCTGTCGACT-TGCCAACATCCCGATGGTGTCCGAG
193 CGATTGGCCACACCAGCCAAGGGCCAGACGCTGTCGA-TGGGCCAACATCCCAATGGTGTCCAAA
* *
14413309 GTAACATCTC-GGGGCAACAATGGACTAGCATCTACCACT
257 GCAACATC-CAAGGGCAACAATGGACTAGCATCTACCACT
* * **
14413348 GATTGTGGTGGACTTG-ATTGGTC-CTACCAGCCAAGGACCAAAGAGTTGTTCAAGGGATCAAGC
1 GATGGTGGTGGA--TGCATTGGTCAC-ACCAGCCAAGGACCAAAGAGGTGTTTTAGGGATCAAGC
* *** * * ** * **
14413411 GCTAGGCACCGCTTTAA-AAGGAGCTCGAGGCAACATCGGACA-TCGAGGGGCTAATGCCCACTA
63 GCCAGGCACC-CACCAAGGAGGAGCTCGAGGCAACATCGGGCACT-GAAAGGCCAACACCCACTA
* * ** *
14413474 GAGAGCTGTCTGAGGCAACAACTCGAGGTAACAATGGGCAAGCATCTACTGTCAATGGTGTTCGA
126 GAGAGCTGTCTGAGGCAACAACTCAAGGTAAAAATGGGCAAGCATCTACACTCAATGGTGTTAGA
* * ** * * * *
14413539 CATGATTGGCCACACTAGGTAAGGGCCAGACGTTGTCGATGGGCTAGCATCCTAATGGTGTCCAA
191 CACGATTGGCCACACCAGCCAAGGGCCAGACGCTGTCGATGGGCCAACATCCCAATGGTGTCCAA
* * *
14413604 AGCAACATCCAAGGGCAACAATGGGCTAGCATCTATCATT
256 AGCAACATCCAAGGGCAACAATGGACTAGCATCTACCACT
* * * *
14413644 GATGGTGGTGGATGCTATTGGTCACACCGGTCAAGGACCAAAGTGGTG-TTTAGGGGATCAAGTG
1 GATGGTGGTGGATGC-ATTGGTCACACCAGCCAAGGACCAAAGAGGTGTTTTA-GGGATCAAGCG
*
14413708 CCAGGTCACCCACCAAGGAGGAGCTCGAGGCAACATCGGGTACTGA
64 CCAGG-CACCCACCAAGGAGGAGCTCGAGGCAACATCGGGCACTGA
14413754 GGGGCTAGCA
Statistics
Matches: 322, Mismatches: 68, Indels: 31
0.76 0.16 0.07
Matches are distributed among these distances:
294 2 0.01
295 11 0.03
296 274 0.85
297 32 0.10
298 3 0.01
ACGTcount: A:0.28, C:0.23, G:0.29, T:0.20
Consensus pattern (295 bp):
GATGGTGGTGGATGCATTGGTCACACCAGCCAAGGACCAAAGAGGTGTTTTAGGGATCAAGCGCC
AGGCACCCACCAAGGAGGAGCTCGAGGCAACATCGGGCACTGAAAGGCCAACACCCACTAGAGAG
CTGTCTGAGGCAACAACTCAAGGTAAAAATGGGCAAGCATCTACACTCAATGGTGTTAGACACGA
TTGGCCACACCAGCCAAGGGCCAGACGCTGTCGATGGGCCAACATCCCAATGGTGTCCAAAGCAA
CATCCAAGGGCAACAATGGACTAGCATCTACCACT
Found at i:14429925 original size:180 final size:180
Alignment explanation
Indices: 14429583--14429985 Score: 456
Period size: 180 Copynumber: 2.2 Consensus size: 180
14429573 ATCAAAATGA
* * * * * * **
14429583 TGTCTGAGGTAACATCTTGGGGCAACAACAAGCCAACATCTACCGATGATGGTGATGGATGCAAT
1 TGTCTAAGGCAACATCTTGGGGCAACAATAGGCCAGCATCTACCGATAATGGTGATGGACACAAT
* * * *
14429648 TGGCTACACCAGCTAAAGACCAAAGAGGTGTTCAGGGGATCAAGCACTAGGCAACCGCCAAGGAG
66 TGGCCACACCAGCCAAAGACCAAAGAGGTGGTCAGGGGATCAAGCACTAGGCAACCGCCAAAGAG
*
14429713 GAGCTCGAGGCAACATCAGGCATAGAAGGGGCCAGCACCCACTA-AGCTGG
131 GAGCTCGAGGCAACATCAGGCATAGAAGGGGCCAGCACCCACTAGAG-AGG
* * *
14429763 TGTCTAAGGCAACATCTTGGGGCAACAATAGGCTAGCATCTACC-ATCAATGGTGGTGGACACGA
1 TGTCTAAGGCAACATCTTGGGGCAACAATAGGCCAGCATCTACCGAT-AATGGTGATGGACACAA
* * ** **
14429827 TTGGCCACACCAGCCAAAGACTAAAGTGGTGGTC-GAGGGATCAAGTGCTAGGCCAATTGCCAAA
65 TTGGCCACACCAGCCAAAGACCAAAGAGGTGGTCAG-GGGATCAAGCACTAGG-CAACCGCCAAA
* ***
14429891 GAGGAGCTCGAGGCAACATCATGCACT-G-AGGGGCCAGCACTTGCTAGAGAGG
128 GAGGAGCTCGAGGCAACATCAGGCA-TAGAAGGGGCCAGCACCCACTAGAGAGG
* * * *
14429943 TGTCTAAGGCAACATCCTAGAGCAATAATAGGCCAGCATCTAC
1 TGTCTAAGGCAACATCTTGGGGCAACAATAGGCCAGCATCTAC
14429986 TGCTGATGGT
Statistics
Matches: 187, Mismatches: 31, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
179 3 0.02
180 148 0.79
181 35 0.19
182 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.28, T:0.17
Consensus pattern (180 bp):
TGTCTAAGGCAACATCTTGGGGCAACAATAGGCCAGCATCTACCGATAATGGTGATGGACACAAT
TGGCCACACCAGCCAAAGACCAAAGAGGTGGTCAGGGGATCAAGCACTAGGCAACCGCCAAAGAG
GAGCTCGAGGCAACATCAGGCATAGAAGGGGCCAGCACCCACTAGAGAGG
Found at i:14433616 original size:45 final size:45
Alignment explanation
Indices: 14433511--14433616 Score: 124
Period size: 45 Copynumber: 2.4 Consensus size: 45
14433501 GAGGCATGCA
* * *
14433511 TGTGTCAATGGTGGTTGAGGCAAGTGTTCGTACCAAGGGCCAGCT
1 TGTGCCAATGGTGGTCGAGGCAAGTGTTCGTACCAAAGGCCAGCT
* ** *
14433556 TATGCTGATGGTGGTCGAGGCAATTGCTT-GTACCAAAGGCCAGCT
1 TGTGCCAATGGTGGTCGAGGCAAGTG-TTCGTACCAAAGGCCAGCT
*
14433601 TGTGCCAATGATGGTC
1 TGTGCCAATGGTGGTC
14433617 AATGCTTGTG
Statistics
Matches: 49, Mismatches: 11, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
45 47 0.96
46 2 0.04
ACGTcount: A:0.21, C:0.19, G:0.33, T:0.27
Consensus pattern (45 bp):
TGTGCCAATGGTGGTCGAGGCAAGTGTTCGTACCAAAGGCCAGCT
Found at i:14436677 original size:295 final size:294
Alignment explanation
Indices: 14436142--14436689 Score: 649
Period size: 295 Copynumber: 1.9 Consensus size: 294
14436132 GTGATTGGTT
* * *
14436142 GCACAAGCCAAGGACTAAAGAGGTGTTCAAGGGATCAAGCACCAGCCACCTGTCAAGGAGGATCT
1 GCACAAGCCAAGGACCAAAAAGGTGTTCAAGGGATCAAGCACCAGCCACCGGTCAAGGAGGATCT
* * * *
14436207 CAAGGCATCATTAGGCACCGAGGGGCCAGCACCTACCAGGGAGGTGTTTAAGGCAACATCCAGAG
66 CAAGGCAACATTAGGCACCGAGGGGCCAACACCCACCAGGGAGGTGTCTAAGGCAACATCCAGAG
* * * * * * *
14436272 GTAATAATGGGTCAGCTTCTGCCACCAATGGTGTTGGACATGATTGGCTGCATTAACCAAGGGCC
131 GCAATAACGGGCCAACTTCTACCACCAATGGTGTTGGACA-GATTGGCTGCACTAACAAAGGGCC
* * * * *
14436337 AGATGTTATTGATGGGCTAGCACCTCAATGGTGATCGAGGTAACATTTTGGGCAATAATGGGCTA
195 AGATGCTATCGATAGGCTAGCACCTCAATAGTGATCGAGGTAACATCTTGGGCAATAATGGGCTA
14436402 GCATCTACCCTTGATAGTATTGGATGCAATTGATC
260 GCATCTACCCTTGATAGTATTGGATGCAATTGATC
* * * *
14436437 GCACTAGCCAAGGACCAAAAAGGTGTTTAGGGGATCAAGCACCAAG-CACCGGTCAATGAGGAGT
1 GCACAAGCCAAGGACCAAAAAGGTGTTCAAGGGATCAAGCACC-AGCCACCGGTCAAGGAGGA-T
* * * *
14436501 -TCGAGGCAACATTGGGCATCGAGGGGCCAACACCCACCAGGGAGGTGTCTGAGGCAACATCCTA
64 CTCAAGGCAACATTAGGCACCGAGGGGCCAACACCCACCAGGGAGGTGTCTAAGGCAACATCC-A
** * * *
14436565 G-GGCAATGGCGGGCCAACATT-TACCACTAATGGTGTTGGATGCA-ATTGGTTGCACTAGCAAA
128 GAGGCAATAACGGGCCAAC-TTCTACCACCAATGGTGTTGGA--CAGATTGGCTGCACTAACAAA
* * * * *
14436627 GGGTCAGATGCTGTCGATAGGCTAGCATCC-CAATAGTGCTTGAGGTAACATCTTGGGCCATAA
190 GGGCCAGATGCTATCGATAGGCTAGCA-CCTCAATAGTGATCGAGGTAACATCTTGGGCAATAA
14436690 CAGGCTTGCA
Statistics
Matches: 209, Mismatches: 37, Indels: 14
0.80 0.14 0.05
Matches are distributed among these distances:
295 198 0.95
296 9 0.04
297 2 0.01
ACGTcount: A:0.28, C:0.22, G:0.29, T:0.21
Consensus pattern (294 bp):
GCACAAGCCAAGGACCAAAAAGGTGTTCAAGGGATCAAGCACCAGCCACCGGTCAAGGAGGATCT
CAAGGCAACATTAGGCACCGAGGGGCCAACACCCACCAGGGAGGTGTCTAAGGCAACATCCAGAG
GCAATAACGGGCCAACTTCTACCACCAATGGTGTTGGACAGATTGGCTGCACTAACAAAGGGCCA
GATGCTATCGATAGGCTAGCACCTCAATAGTGATCGAGGTAACATCTTGGGCAATAATGGGCTAG
CATCTACCCTTGATAGTATTGGATGCAATTGATC
Found at i:14439643 original size:45 final size:45
Alignment explanation
Indices: 14439592--14439678 Score: 120
Period size: 45 Copynumber: 1.9 Consensus size: 45
14439582 TGCAAGTGTC
* * *
14439592 GATGGTGGTTAAGGCAAGTGCTCGTACCAAAGGCCAGCTTATAGT
1 GATGGTGGTTAAGGCAAGTACCCATACCAAAGGCCAGCTTATAGT
** *
14439637 GATGGTGGTTGGGGTAAGTACCCATACCAAAGGCCAGCTTAT
1 GATGGTGGTTAAGGCAAGTACCCATACCAAAGGCCAGCTTAT
14439679 GCCGATAATG
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 36 1.00
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.24
Consensus pattern (45 bp):
GATGGTGGTTAAGGCAAGTACCCATACCAAAGGCCAGCTTATAGT
Found at i:14442397 original size:296 final size:293
Alignment explanation
Indices: 14441597--14442465 Score: 765
Period size: 296 Copynumber: 2.9 Consensus size: 293
14441587 CTTTCGACAA
** * * * *
14441597 GCCAGCATCTTGATGGTGTTTGAGGTAACATCCTGGGGCAACAATGGGCTAGCATTAGCCATCGA
1 GCCAGCATCTTGATGGTGTTCAAAGTAACATCCTAGGGCAACAATGGGCTAGCATTTGTCATCGA
* * *
14441662 TGGTGGTAGATGTGATTGGTCATACCAGCCAAAGACTAAAGAGGTGTTTGGGGGATCAAGTGCCA
66 TGGTGGTAGACGTGATTGGTCACACCAGCCAAAGACTAAAGAGGTGTTT-GGGGATCAAGCGCCA
* * * * * * *
14441727 AGCTACCTACCAAAGAGGAGCTCGAGGCGACATCGAGCACCGA-AGAGCCAGCATCCACCATGAA
130 AG-AACCTACCAAGGAAGAGCTCAAGGCAACATCGGGCA-CGAGA-AGCCAGCA-CCACCATGGA
* *
14441791 GGTGTCCAAGGAAACATCTCAGGGTAACAACAAGCCAGCATCTATCACCGATGGTGTTGGATGTG
191 GGTGTCCAAGGCAACATCTCAAGGTAACAACAAGCCAGCATCTATCACCGATGGTGTTGGATGTG
* * **
14441856 ATTGGCCACACCAACTAAAGGCCAGACACTATCGTTGG
256 ATTGGCCACACCAACCAAAGGACAGACACTATCAATGG
* * * * * * * * * *
14441894 GCCAGTATATCGAGGGTG-TCCAAGCTAACATCCTAAGGTAACAATAGGCTAGCATCTGTCATTG
1 GCCAGCATCTTGATGGTGTTCAAAG-TAACATCCTAGGGCAACAATGGGCTAGCATTTGTCATCG
* ** * ** * ** *
14441958 ATAGTGCCAGACGTGATTGGTTACACCAGTTAAGGAAGAAAGAGGTGTTTGGCGGATCAAGCACC
65 ATGGTGGTAGACGTGATTGGTCACACCAGCCAAAGACTAAAGAGGTGTTTGG-GGATCAAGCGCC
* * * * * * * *
14442023 -AGACACTTATCAAGGATGAGCTCAAGGCAACATCGGGCACTGAGAGGCTAGCCCCCGCCATAGA
129 AAGA-ACCTACCAAGGAAGAGCTCAAGGCAACATCGGGCAC-GAGAAGCCAG-CACCACCATGGA
* * * * * * *
14442087 TGTGTCCTAGGCAACATCTTAAGGTAACAATAGGCCAGCTTCTATCATCGATGGTGTTGGATGTG
191 GGTGTCCAAGGCAACATCTCAAGGTAACAACAAGCCAGCATCTATCACCGATGGTGTTGGATGTG
* * * * * **
14442152 ATTTGTCGCACCAGCCAAGGGACAGATGCTATCAATGG
256 ATTGGCCACACCAACCAAAGGACAGACACTATCAATGG
* * * * *
14442190 GCCAGCATCTTGATAGTGTTCAAAGTAACATCCCAGGGCAACAACGGGCCAACATTTGTCATCGA
1 GCCAGCATCTTGATGGTGTTCAAAGTAACATCCTAGGGCAACAATGGGCTAGCATTTGTCATCGA
* * * * *
14442255 TGGTGGTGGACATGATTGGTCACACCAGCCAATGACTAAAGAGCTGTTTGAGGGATCATGCGCCA
66 TGGTGGTAGACGTGATTGGTCACACCAGCCAAAGACTAAAGAGGTGTTTG-GGGATCAAGCGCCA
* * * *
14442320 AGAACCCACCAAGGAAGAGCTCAAGGCAACATCGGGCATCGAGAAGCCAACACCTACTAGGGAGG
130 AGAACCTACCAAGGAAGAGCTCAAGGCAACATCGGGCA-CGAGAAGCCAGCACC-ACCATGGAGG
* ** * ** * * ** * * *
14442385 TGTCCGAGGCAACATCTCGGGGCAACAA-TGGTCTAGCATTTGCCACTGATGGTGTTGGGTATGA
193 TGTCCAAGGCAACATCTCAAGGTAACAACAAG-CCAGCATCTATCACCGATGGTGTTGGATGTGA
14442449 TTGGCCACACCAACCAA
257 TTGGCCACACCAACCAA
14442466 TGTCCAAACA
Statistics
Matches: 437, Mismatches: 123, Indels: 25
0.75 0.21 0.04
Matches are distributed among these distances:
295 6 0.01
296 325 0.74
297 106 0.24
ACGTcount: A:0.29, C:0.23, G:0.27, T:0.21
Consensus pattern (293 bp):
GCCAGCATCTTGATGGTGTTCAAAGTAACATCCTAGGGCAACAATGGGCTAGCATTTGTCATCGA
TGGTGGTAGACGTGATTGGTCACACCAGCCAAAGACTAAAGAGGTGTTTGGGGATCAAGCGCCAA
GAACCTACCAAGGAAGAGCTCAAGGCAACATCGGGCACGAGAAGCCAGCACCACCATGGAGGTGT
CCAAGGCAACATCTCAAGGTAACAACAAGCCAGCATCTATCACCGATGGTGTTGGATGTGATTGG
CCACACCAACCAAAGGACAGACACTATCAATGG
Found at i:14442610 original size:117 final size:116
Alignment explanation
Indices: 14442385--14442701 Score: 301
Period size: 117 Copynumber: 2.7 Consensus size: 116
14442375 ACTAGGGAGG
* * * * **
14442385 TGTCCGAGGCAACATCTCGGGGCAACAATGGTCTAGCATTTGCCACTGATGGTGTTGGGTATGAT
1 TGTCTGAGGTAACATCTC-GGGCAACAATGGACTAGCATCTGCCACTGATGGTGTTGGACATGAT
* * * * * * * ***
14442450 TGGCCACACCAACCAATGTCCAAACATTGTCGATAGGCTAGCATCTTGATGA
65 TGGCCACACCAGCCAAGGGCCAAACACTATCGACAGGCGAGCATCCCAATGA
* * * * * *
14442502 TGTCTGAGGTAACATCCCAGGGTAACAACGGGCTAGCATCTGCCACTAATGGTGTTGAACATGAT
1 TGTCTGAGGTAACATCTC-GGGCAACAATGGACTAGCATCTGCCACTGATGGTGTTGGACATGAT
** * *
14442567 TGGCCACACCAGCCAAGGGCCAGGCACTATTGACAGGCGAGCATCCCAATGT
65 TGGCCACACCAGCCAAGGGCCAAACACTATCGACAGGCGAGCATCCCAATGA
* * * * *
14442619 TGTTTGAGGTAACATCTCGAGGCATCAATGGACTAGCATCTACCACTGATGGTGGTGGACGTGAT
1 TGTCTGAGGTAACATCTCG-GGCAACAATGGACTAGCATCTGCCACTGATGGTGTTGGACATGAT
** *
14442684 TGGCTGCACCAGTCAAGG
65 TGGCCACACCAGCCAAGG
14442702 ATCAAAGAGG
Statistics
Matches: 159, Mismatches: 40, Indels: 2
0.79 0.20 0.01
Matches are distributed among these distances:
116 1 0.01
117 158 0.99
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (116 bp):
TGTCTGAGGTAACATCTCGGGCAACAATGGACTAGCATCTGCCACTGATGGTGTTGGACATGATT
GGCCACACCAGCCAAGGGCCAAACACTATCGACAGGCGAGCATCCCAATGA
Found at i:14453323 original size:45 final size:45
Alignment explanation
Indices: 14453231--14453325 Score: 109
Period size: 45 Copynumber: 2.1 Consensus size: 45
14453221 AAGGCATGCA
* ** * *
14453231 TGTGCTGATGGTGGTCGAGGTAAGTGTCCGTACTAAAAGCCAACT
1 TGTGCTGATGGTGGTCGAGGCAAGTCCCCATACCAAAAGCCAACT
* * * *
14453276 TGTGCTGATGGTGGTTGAGGCAATTCCCCATACCAAAGGCCAGCT
1 TGTGCTGATGGTGGTCGAGGCAAGTCCCCATACCAAAAGCCAACT
14453321 TGTGC
1 TGTGC
14453326 CAATGATGGT
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.22, C:0.21, G:0.31, T:0.26
Consensus pattern (45 bp):
TGTGCTGATGGTGGTCGAGGCAAGTCCCCATACCAAAAGCCAACT
Found at i:14456227 original size:297 final size:293
Alignment explanation
Indices: 14455715--14456442 Score: 700
Period size: 297 Copynumber: 2.5 Consensus size: 293
14455705 GAGGTAACCC
* * * *
14455715 AAGGCAACAATGGGCTAACATCTACCACTGATGGTGGTAGAAGCATTTGGCTACACCAGTCATGG
1 AAGGCAACAATGGGCTAGCATCTACCACTGATGGTGGTAGATGCAATTGGCT-CACCAGTCAAGG
* * * *
14455780 ACCAAAGTGGTGTTTAAGGGATCAAGCACTAGGCACC-AGCCAAGGAAGAGCTCGAGGCAACATT
65 ACCAAAGAGGTGTTTAGGGGATCAAGCACTAGGCACCTA-CCAAGGAGGAGCTTGAGGCAACATT
* * * ** *
14455844 AGGCACCGAGGGTTAAGCACCTACCAAGGAGGTGTATGAGGAATCATCTCGGGGCAATAATGGGC
129 AGGCACCAAGGGCTAAGCA-CTACCAAGGAGGTGTATGAGGAATCATCCCAAGGCAATAATAGGC
* * * * * *
14455909 TAGCATTTACCATCAATGGTGTTGCATG-AGATTGGCTAAACA-AGCTAAGGGCCAGACACTATC
193 CAACATCTACCACCAATGGTGTTGCATGCA-ATTGG-T-AACAGAGCCAAGAGCCAGACACTATC
* * **
14455972 GATCGGCTAGCGTCCTGATGGTGTCCAAGGTAACATC-T
255 GATCGGCTACCATCCCAATGGTGTCCAAGGTAACATCTT
* * * * *
14456010 AGAGGCAACAATGGGCTAGCATCTACTACTGATGGTGGTCGATGCAACTGGTCTCACTAGTCAAA
1 A-AGGCAACAATGGGCTAGCATCTACCACTGATGGTGGTAGATGCAATTGG-CTCACCAGTCAAG
* * * * *
14456075 GACCAAAGAGTTGTTTGGGGGTTCAAGCGCTAGGTCACCTTCCAAGGAGGAGCTTGAGGCAACAT
64 GACCAAAGAGGTGTTTAGGGGATCAAGCACTAGG-CACCTACCAAGGAGGAGCTTGAGGCAACAT
* * * *
14456140 TAGGCACTAATGGGCT-AGCTA-TAGCTAGGGAGGTGTTTGAGGCAA-CATCCCAAGGCAATAAT
128 TAGGCACCAA-GGGCTAAGC-ACTA-CCAAGGAGGTGTATGAGG-AATCATCCCAAGGCAATAAT
* * * ** *
14456202 AGGCCAACATCTACTACCGATGGTGTTGGATGCAATTGGTCGCATGAGCCAAGAGCCAGACGCTA
189 AGGCCAACATCTACCACCAATGGTGTTGCATGCAATTGGTAACA-GAGCCAAGAGCCAGACACTA
* * *
14456267 TTGATGGGCTACCATCCCAATGGTGTCTAAGGTAACATCTT
253 TCGATCGGCTACCATCCCAATGGTGTCCAAGGTAACATCTT
* * * * * *
14456308 AAAGCAACAATGGGCTAGCATTTGCCA-TCGATGGTGGTGGATGCGATTAGCAGT-ACCAGTCAA
1 AAGGCAACAATGGGCTAGCATCTACCACT-GATGGTGGTAGATGCAATTGGC--TCACCAGTCAA
* ** * *
14456371 GGACCAAAAAGGTGTTTAGGGGATCAAGCTTTATGCCACCTACCAAAGAGGAGCTTGAGGCAACA
63 GGACCAAAGAGGTGTTTAGGGGATCAAGCACTA-GGCACCTACCAAGGAGGAGCTTGAGGCAACA
*
14456436 TTTGGCA
127 TTAGGCA
14456443 TTGAGAGGCC
Statistics
Matches: 350, Mismatches: 67, Indels: 30
0.78 0.15 0.07
Matches are distributed among these distances:
295 3 0.01
296 84 0.24
297 251 0.72
298 12 0.03
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.22
Consensus pattern (293 bp):
AAGGCAACAATGGGCTAGCATCTACCACTGATGGTGGTAGATGCAATTGGCTCACCAGTCAAGGA
CCAAAGAGGTGTTTAGGGGATCAAGCACTAGGCACCTACCAAGGAGGAGCTTGAGGCAACATTAG
GCACCAAGGGCTAAGCACTACCAAGGAGGTGTATGAGGAATCATCCCAAGGCAATAATAGGCCAA
CATCTACCACCAATGGTGTTGCATGCAATTGGTAACAGAGCCAAGAGCCAGACACTATCGATCGG
CTACCATCCCAATGGTGTCCAAGGTAACATCTT
Found at i:14466127 original size:13 final size:13
Alignment explanation
Indices: 14466108--14466141 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
14466098 ATGGTGTTCG
*
14466108 AGGCAACATCCTA
1 AGGCAACATCCCA
*
14466121 GGGCAACATCCCA
1 AGGCAACATCCCA
14466134 AGGCAACA
1 AGGCAACA
14466142 GTAGGCCAAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.38, C:0.32, G:0.21, T:0.09
Consensus pattern (13 bp):
AGGCAACATCCCA
Found at i:14471973 original size:179 final size:179
Alignment explanation
Indices: 14471651--14472005 Score: 383
Period size: 179 Copynumber: 2.0 Consensus size: 179
14471641 GGTGGATTTG
* * * ***
14471651 ATTGGCTACACCAGCGAAAGACCAAAGAGGTGTTTAGGGGATGAAGGGCCAAGCACCAACCAAGG
1 ATTGGCCACACCAGCCAAAGACCAAAGAGGTGTTGAGGGGATGAAGCAACAAGCACCAACCAAGG
* * * * * *
14471716 AAGAGCTTGAGGCAACATCGGGCACCAAGGGGCCAACACCCACAAAGGATGTGTCTGAGGCAACA
66 AAGAGCTTAAGGCAACATCAGGCACCAAAGGGCCAACACCCACAAAGGAGGTATCTAAGGCAACA
* *
14471781 TCCTAGGGCAACAACGGGCTAGCATCTACCATCGATGGTGGTGGACCAA
131 TCCTAGGGCAACAACGGGCCAACATCTACCATCGATGGTGGTGGACCAA
* *
14471830 ATTGGCCACACCAGCCAAAGACCAAAGTGGTGTTCGA-GGGACT-AAGCAACAAGCACCAGCCAA
1 ATTGGCCACACCAGCCAAAGACCAAAGAGGTGTT-GAGGGGA-TGAAGCAACAAGCACCAACCAA
* * * *** * * *
14471893 TGAGGAGCTTAAGGCAACATCAGGCACCAAAGGGCTAACACTTGCCAGGGAGGTATCTAAGGTAA
64 GGAAGAGCTTAAGGCAACATCAGGCACCAAAGGGCCAACACCCACAAAGGAGGTATCTAAGGCAA
* * * ** *
14471958 CAT-CTTGATGCAACAATGGGCCAACATCTGTCATCGATGGTGTTGGAC
129 CATCCTAG-GGCAACAACGGGCCAACATCTACCATCGATGGTGGTGGAC
14472006 ACAACTGGTT
Statistics
Matches: 142, Mismatches: 31, Indels: 6
0.79 0.17 0.03
Matches are distributed among these distances:
178 3 0.02
179 137 0.96
180 2 0.01
ACGTcount: A:0.32, C:0.24, G:0.28, T:0.15
Consensus pattern (179 bp):
ATTGGCCACACCAGCCAAAGACCAAAGAGGTGTTGAGGGGATGAAGCAACAAGCACCAACCAAGG
AAGAGCTTAAGGCAACATCAGGCACCAAAGGGCCAACACCCACAAAGGAGGTATCTAAGGCAACA
TCCTAGGGCAACAACGGGCCAACATCTACCATCGATGGTGGTGGACCAA
Found at i:14473870 original size:45 final size:45
Alignment explanation
Indices: 14473821--14473918 Score: 124
Period size: 45 Copynumber: 2.2 Consensus size: 45
14473811 TATGCTGATA
* *
14473821 GTGGTCGAGACAAGTGCCCATACTAAGGGCCAGCTTATGCCAATG
1 GTGGTCGAGACAAGTGCCCACACTAAAGGCCAGCTTATGCCAATG
* * * * *
14473866 GTGGTTGAGCCAATTGCCCACACTAAAGGCCAGCTTGTGCCCATG
1 GTGGTCGAGACAAGTGCCCACACTAAAGGCCAGCTTATGCCAATG
*
14473911 ATGGTCGA
1 GTGGTCGA
14473919 TGCATGTGCC
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.24, C:0.26, G:0.29, T:0.21
Consensus pattern (45 bp):
GTGGTCGAGACAAGTGCCCACACTAAAGGCCAGCTTATGCCAATG
Found at i:14476906 original size:13 final size:13
Alignment explanation
Indices: 14476888--14476914 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
14476878 GAGGTGTTTG
14476888 GGGTAACATTCTA
1 GGGTAACATTCTA
14476901 GGGTAACATTCTA
1 GGGTAACATTCTA
14476914 G
1 G
14476915 CATCTGCCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.30
Consensus pattern (13 bp):
GGGTAACATTCTA
Found at i:14486700 original size:296 final size:295
Alignment explanation
Indices: 14486398--14486945 Score: 633
Period size: 296 Copynumber: 1.9 Consensus size: 295
14486388 ACTTCTACTG
** *
14486398 TCAATGGTGTTGGACAAGATTGGCCACACCAGGTAAAGGCTAAAAGCTATCGACAAG-CTACTAT
1 TCAATGGTGTTGGACAAGATTGGCCACACCAGCCAAAGGCTAAAAGCTATCGACAAGCCAAC-AT
* * * *
14486462 CCTGATGGTGTCTAAGGTAACATCCCAATGCAATAATGGG-CTAGCATCTATCA-TCGATGGTGG
65 CCTGATGGTGTCTAAGGCAACATACCAAGGCAACAATGGGTC-AGCATCTATCACT-GATGGTGG
** * * * * *
14486525 TGGATGTGATTGGCCGCACCCA-TCTAGGACCAAAAAGGTGTTCAGGGGATCAAG-TGCCT-GGC
128 TGGATGCAATTGGCCACA-CCAGCCAAGGACCAAAAAGGTGCTCAAGGGATCAAGCT--CTAGGC
* * *
14486587 ACCCACCAAGGAAAAGCTCGAGGCAACATCAGGCACTGATA-GGCTAACACCCACTAGGGAGGTG
190 ACCCACCAAGGAAAAGCTCGAGGCAACATC-GACACTGA-AGGGCCAACACCCACCAGGGAGGTG
14486651 CCCAAGGTAATATCTAAGGGCAATAGCGGGCCATCATCTGTCA
253 CCCAAGGTAATATCTAAGGGCAATAGCGGGCCATCATCTGTCA
** * * * * *** **
14486694 TCAATGGTGTTGGACGTGATTGGTCGCACTAGCCAAGGGCTAGGTGCTATCGACTTGCCAACATC
1 TCAATGGTGTTGGACAAGATTGGCCACACCAGCCAAAGGCTAAAAGCTATCGACAAGCCAACATC
* * *
14486759 CTGATGGTGTTTGAGGCAACATATCAAGGCAACAATGGGTCAGCATCTATCACTGATGGTGGTGG
66 CTGATGGTGTCTAAGGCAACATACCAAGGCAACAATGGGTCAGCATCTATCACTGATGGTGGTGG
* * *
14486824 ATGCAATTGGCCACACTAGCCAAGGACCAAAGAGGTGCTCAAGGGATCAAGCTCTAGGCACTCAC
131 ATGCAATTGGCCACACCAGCCAAGGACCAAAAAGGTGCTCAAGGGATCAAGCTCTAGGCACCCAC
* ** *
14486889 TAAGGAGGAGCTCGAGGCAACATCGACACTGAAGGGCCAACATCCACCAGGGAGGTG
196 CAAGGAAAAGCTCGAGGCAACATCGACACTGAAGGGCCAACACCCACCAGGGAGGTG
14486946 TCTGAGGTAA
Statistics
Matches: 207, Mismatches: 38, Indels: 15
0.80 0.15 0.06
Matches are distributed among these distances:
294 1 0.00
295 31 0.15
296 169 0.82
297 6 0.03
ACGTcount: A:0.29, C:0.23, G:0.28, T:0.20
Consensus pattern (295 bp):
TCAATGGTGTTGGACAAGATTGGCCACACCAGCCAAAGGCTAAAAGCTATCGACAAGCCAACATC
CTGATGGTGTCTAAGGCAACATACCAAGGCAACAATGGGTCAGCATCTATCACTGATGGTGGTGG
ATGCAATTGGCCACACCAGCCAAGGACCAAAAAGGTGCTCAAGGGATCAAGCTCTAGGCACCCAC
CAAGGAAAAGCTCGAGGCAACATCGACACTGAAGGGCCAACACCCACCAGGGAGGTGCCCAAGGT
AATATCTAAGGGCAATAGCGGGCCATCATCTGTCA
Found at i:14489855 original size:117 final size:117
Alignment explanation
Indices: 14489686--14489954 Score: 297
Period size: 117 Copynumber: 2.3 Consensus size: 117
14489676 TTTGTCGTTG
* * * * *
14489686 ATGGTGTTGGATGTGATTGGCCACACCAGCCAATGGCCAGACGCTGTCGATGGGCCGGCATCCTA
1 ATGGTGTTGGATGCGATTGGCCACACCAGCCAAGGGCCAGACGCTATCGATGGGCCAGCATCCCA
* * *
14489751 ATGGTGTCTAAGGCAACAAC-CCATGGTAACAACAGGCTAGCATCTGCCACTA
66 ATGCTGTCCAAGGCAACAACTCCA-GGTAACAACAGGCCAGCATCTGCCACTA
* ** * * * * *
14489803 ATGGTGTTGGATACGATTGGCTGCACTAGCCAAGGGCTAGATGCTATCGATGGGGCAGCATCCCG
1 ATGGTGTTGGATGCGATTGGCCACACCAGCCAAGGGCCAGACGCTATCGATGGGCCAGCATCCCA
* * * **
14489868 ATGCTGTCCAAGGTAACATCTCGAGGTAACAATGGGCCAGCATCTGCCACTA
66 ATGCTGTCCAAGGCAACAACTCCAGGTAACAACAGGCCAGCATCTGCCACTA
* * * *
14489920 GTGGTGGTGGATGCGATTGGTCACACCAGTCAAGG
1 ATGGTGTTGGATGCGATTGGCCACACCAGCCAAGG
14489955 ACTAAAGAGA
Statistics
Matches: 122, Mismatches: 29, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
117 120 0.98
118 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.30, T:0.22
Consensus pattern (117 bp):
ATGGTGTTGGATGCGATTGGCCACACCAGCCAAGGGCCAGACGCTATCGATGGGCCAGCATCCCA
ATGCTGTCCAAGGCAACAACTCCAGGTAACAACAGGCCAGCATCTGCCACTA
Found at i:14490221 original size:70 final size:70
Alignment explanation
Indices: 14490078--14490229 Score: 207
Period size: 70 Copynumber: 2.2 Consensus size: 70
14490068 AAGGGCAACA
* * * * * * *
14490078 ATGGGCTAGCATTAGTCATGATGGTGCTGGACGTGATTGGTCGCACCTGTTGATGGGCTAGACAT
1 ATGGGCCAGCATTAGTCACGATGGTGCTGAAAGGGATTGGTCACACCTGTTGATGGGCTAGACAC
*
14490143 TGTTG
66 TATTG
*
14490148 ATGGGCCAGCATTAGTCACCGATGGTGCTGAAAGGGATTGGTCACACCTGTTGATGGG-TCGACA
1 ATGGGCCAGCATTAGTCA-CGATGGTGCTGAAAGGGATTGGTCACACCTGTTGATGGGCTAGACA
14490212 CTATTG
65 CTATTG
14490218 ATGGGCCAGCAT
1 ATGGGCCAGCAT
14490230 CTCGATGGTG
Statistics
Matches: 72, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
70 38 0.53
71 34 0.47
ACGTcount: A:0.21, C:0.18, G:0.33, T:0.28
Consensus pattern (70 bp):
ATGGGCCAGCATTAGTCACGATGGTGCTGAAAGGGATTGGTCACACCTGTTGATGGGCTAGACAC
TATTG
Found at i:14495685 original size:20 final size:20
Alignment explanation
Indices: 14495660--14495706 Score: 94
Period size: 20 Copynumber: 2.4 Consensus size: 20
14495650 CACCAGCTAA
14495660 GGATGAAAGTGGTGTTCAGG
1 GGATGAAAGTGGTGTTCAGG
14495680 GGATGAAAGTGGTGTTCAGG
1 GGATGAAAGTGGTGTTCAGG
14495700 GGATGAA
1 GGATGAA
14495707 GTGCCAGGTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.28, C:0.04, G:0.45, T:0.23
Consensus pattern (20 bp):
GGATGAAAGTGGTGTTCAGG
Found at i:14502972 original size:34 final size:34
Alignment explanation
Indices: 14502934--14503008 Score: 114
Period size: 34 Copynumber: 2.2 Consensus size: 34
14502924 GATCAGGTGC
*
14502934 CAGGCACCCATAAAAGAAGAGCTCGAGTCAACAT
1 CAGGCACCCACAAAAGAAGAGCTCGAGTCAACAT
* **
14502968 CAGGCACCCACAAAAGAGGAGCTCGAGTCAGTAT
1 CAGGCACCCACAAAAGAAGAGCTCGAGTCAACAT
14503002 CAGGCAC
1 CAGGCAC
14503009 TGAAGGGCTA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.37, C:0.28, G:0.24, T:0.11
Consensus pattern (34 bp):
CAGGCACCCACAAAAGAAGAGCTCGAGTCAACAT
Found at i:14503946 original size:12 final size:12
Alignment explanation
Indices: 14503929--14503959 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
14503919 AGGTGTCCAA
14503929 GGCAACATCCTG
1 GGCAACATCCTG
14503941 GGCAACATCCTG
1 GGCAACATCCTG
*
14503953 GGGAACA
1 GGCAACA
14503960 ATGGGCTAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.29, C:0.29, G:0.29, T:0.13
Consensus pattern (12 bp):
GGCAACATCCTG
Found at i:14506242 original size:24 final size:24
Alignment explanation
Indices: 14506213--14506267 Score: 110
Period size: 24 Copynumber: 2.3 Consensus size: 24
14506203 GTGTTTGAGG
14506213 CAACATCCCAGGGCAACAATGGCC
1 CAACATCCCAGGGCAACAATGGCC
14506237 CAACATCCCAGGGCAACAATGGCC
1 CAACATCCCAGGGCAACAATGGCC
14506261 CAACATC
1 CAACATC
14506268 TGCTGTTAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.35, C:0.38, G:0.18, T:0.09
Consensus pattern (24 bp):
CAACATCCCAGGGCAACAATGGCC
Found at i:14528168 original size:297 final size:294
Alignment explanation
Indices: 14526710--14528842 Score: 1017
Period size: 296 Copynumber: 7.2 Consensus size: 294
14526700 ATAACAGGCT
* * * ** *
14526710 AGCATTTACCACTGATGGTGTTGGACGTGGTTGGTTGCACCAGCCAAAAGCCAGA-TGCTATTGA
1 AGCATCTACCACTGATGGTGTTGGACGTGATTGGTTGCACCAGCTAAGGGCCAGACT-CTATCGA
* * * * * *
14526774 TAGGCTAGCATCCCT-ATGGTGTCTGAGGTAACATCCTAGGGCAACAATGGACCTGTATCTACCA
65 TAGGCTAGCAT-CCTGATGGTGTCCGAGGTAACATCCTGGGGCAACAATGGGCCAGCATCTATCA
** * * * *
14526838 -CCAATGGTGGTGGATCCAATTGGC--CTACTAGCTAAGGA-CAAATGAG-ATGTCCAGGGGATC
129 TTGAATGGTGGTGGATGCGATTGGCTGC-AC-AACAAAGGACCAAA-GAGTAT-T-CAGGGGATC
* * * ** * * * * * * * *
14526898 AAGCGTCAGGCACTCT-CCAGGGAGGAGCTCGAGGCAATAACGTGCAGCGAAGGGCCAACACTCA
189 AAGTGCCAGGCAC-CTACCAAGGAGGAGCTTAAGGCAACATC-AGCATCGAGGGGCCAGCACCCT
* * * * * *
14526962 CCAAAGAGGTGTCTAAAGCAACATCTCGAGGCAACAATGGGCC
252 CCAAAGAGGTGTCCAAGGCAACATCCCAAGGTAACAATGAGCC
* * * * * * * * * * *
14527005 AGTATCTATCACTAATGGTGTTGGACATGATTGCTCGCACTAGCCAAGGGCTAGACACTATCAAT
1 AGCATCTACCACTGATGGTGTTGGACGTGATTGGTTGCACCAGCTAAGGGCCAGACTCTATCGAT
* * * ** * * * *** * *
14527070 GGGCTAGCAACCCT-ATAGTGTCTAAGGTAACATCCTAGGGTAATAACAAGCCAGTATCTACCA-
66 AGGCTAGC-ATCCTGATGGTGTCCGAGGTAACATCCTGGGGCAACAATGGGCCAGCATCTATCAT
** *** * * * ** *
14527133 CCAATGGTGGTGGACATGATTGGTTGCACCAGCTAAGGATGAATA-AGGTATTTAAGGGGATCAA
130 TGAATGGTGGTGGATGCGATTGGCTGCA-CAACAAAGGACCAA-AGA-GTA-TTCAGGGGATCAA
* * * * * * * * *
14527197 CTGCTAGGTAGC-ACCAAAGAGGAGCTTAAGGCAACATCAGACATTGAGCGGCCAGCACTCACCA
191 GTGCCAGGCACCTACCAAGGAGGAGCTTAAGGCAACATCAG-CATCGAGGGGCCAGCACCCTCCA
** ** * * * *
14527261 GAA-AGGTGTTTAAGGCAACATCCTGATGCAACAACGTGCC
255 -AAGAGGTGTCCAAGGCAACATCCCAAGGTAACAATGAGCC
* ** * * * * * * *
14527301 AACATCTA--GTTAATGGTGTTGGATGGGATTAG-CGACACCAG-TCATGGGCCAGA-TGCTATT
1 AGCATCTACCACTGATGGTGTTGGACGTGATTGGTTG-CACCAGCT-AAGGGCCAGACT-CTATC
** ** *** *
14527361 GATAGGCTAGCATCCTGATAATGTCTAAGGTAACATCCCAAGGCAACAATGGGCCAGCATTTA-C
63 GATAGGCTAGCATCCTGATGGTGTCCGAGGTAACATCCTGGGGCAACAATGGGCCAGCATCTATC
* * * * *
14527425 -TGTCG-ATGGTGGTGGATGCAATTGGCTGCCCTAACCAAGGACCAAAGTGGTGTTC-GGGGTAT
128 AT-T-GAATGGTGGTGGATGCGATTGGCTGCAC-AACAAAGGACCAAAG-AGTATTCAGGGG-AT
* * * * * * * *
14527487 CAATTGCTAGGCTCCTACTAAGGTGGAGCTTAAGGCAACATCGGGCA-CTGAAGGGCCAGAACCC
188 CAAGTGCCAGGCACCTACCAAGGAGGAGCTTAAGGCAACATC-AGCATC-GAGGGGCCAGCACCC
* * *** * * * *
14527551 AT-CAGAA-AGGTGTCCAAAGAAACATCCTGGGGCAATAACGGGCC
251 -TCCA-AAGAGGTGTCCAAGGCAACATCCCAAGGTAACAATGAGCC
** * * * ** * * * *
14527595 AATATCTACCATTGATGGTGTTAGATGTGATTGACTACACCTG-TCATGGGCCAAACAT-TATCG
1 AGCATCTACCACTGATGGTGTTGGACGTGATTGGTTGCACCAGCT-AAGGGCCAGAC-TCTATCG
* * ** * *** * * *
14527658 AT-GAGCTAGCATCCTAATGGTCTCTAAGGCAACATCCCAAGGTAACAATGGGCCAGCATTTACC
64 ATAG-GCTAGCATCCTGATGGTGTCCGAGGTAACATCCTGGGGCAACAATGGGCCAGCATCTATC
* * * * * * * * * *
14527722 ACT-AATGGTCGTGGACGTGATTAGTTGCATAGCCAAA-GAGCAAAGAGGTGCTT-AGGGGATCA
128 ATTGAATGGTGGTGGATGCGATTGGCTGCACA-ACAAAGGACCAAAGA-GT-ATTCAGGGGATCA
* * * *
14527784 AGTGCCAGGCACCCACGAAGGAGGAGCTTAAGGCAACATCATGCATTGAGGGGCCAACACCCGT-
190 AGTGCCAGGCACCTACCAAGGAGGAGCTTAAGGCAACATCA-GCATCGAGGGGCCAGCACCC-TC
* * * *
14527848 AAAAGAGGTGTTCGAGGCAACATCCCAAGGCAACAATGAGCC
253 CAAAGAGGTGTCCAAGGCAACATCCCAAGGTAACAATGAGCC
* *
14527890 AGCATCTACCACTGATGTTGTTGGACGTGATTGGTTGCACCAGCTATA-GGCCAAACTCTATCGA
1 AGCATCTACCACTGATGGTGTTGGACGTGATTGGTTGCACCAGCTA-AGGGCCAGACTCTATCGA
* * * * * * *
14527954 TTGGCTAGCATCCTGATAGTGTCTGAGGAAACATGCTGGGGCAATAATGGGCCAGCATCTACCAT
65 TAGGCTAGCATCCTGATGGTGTCCGAGGTAACATCCTGGGGCAACAATGGGCCAGCATCTATCAT
* **
14528019 TGAAT-GTGGTGGATGTGATTGGCTGCACAATCAAAGGACCAAAGAGATAATTTGGGGGATCAAG
130 TGAATGGTGGTGGATGCGATTGGCTGCACAA-CAAAGGACCAAAGAG-T-ATTCAGGGGATCAAG
* * * * ** * *
14528083 CGCCAGGCACCTGCCAAGGAGGAGCATGAGGCAACATCAGGCATCGAGGGGTTAGCACCCTCTAG
192 TGCCAGGCACCTACCAAGGAGGAGCTTAAGGCAACATCA-GCATCGAGGGGCCAGCACCCTCCAA
* * ***
14528148 GGAGGTGTCCAAGCCAACATCTTGAGGTAACAATGAGCC
256 AGAGGTGTCCAAGGCAACATCCCAAGGTAACAATGAGCC
* * * * * * *
14528187 AGCATCTACCGCTGATGGTGTTAGACATGAATGGCTACACCAG-TCAAGGGCCAGA-TGCTGTCG
1 AGCATCTACCACTGATGGTGTTGGACGTGATTGGTTGCACCAGCT-AAGGGCCAGACT-CTATCG
* * * * * * * * *
14528250 ATGGGTTAGCAT-CTCGATGGTGTCCAAGGTGACATCCAGTGGCAACAATGGGCCATCATCTGTA
64 ATAGGCTAGCATCCT-GATGGTGTCCGAGGTAACATCCTGGGGCAACAATGGGCCAGCATCTATC
** * ** * * * *
14528314 ACCG-ATGGTGGTGGATGCAATTGGCCACACCAGCCAAGGACCAAAGAGGTGTTCAAGGGATCAA
128 ATTGAATGGTGGTGGATGCGATTGGCTGCA-CAACAAAGGACCAAAGA-GTATTCAGGGGATCAA
* * * * * ** * *
14528378 GTGCTAGGCACATGCTAAGGAAGAGCTCGAGGCAACATCTAGCATCGAGGGGCTAGCACCCACCA
191 GTGCCAGGCACCTACCAAGGAGGAGCTTAAGGCAACATC-AGCATCGAGGGGCCAGCACCCTCCA
** * ** * *
14528443 AAGAGGTGTCTGAGGTAACATTTCGAGGTAACAACGAGCC
255 AAGAGGTGTCCAAGGCAACATCCCAAGGTAACAATGAGCC
* * * *
14528483 AGCATCTACCACTGATGGTGTTGGATGTGATTGGTGGCACTAGCTAAGGGCCAGACAT-TATTGA
1 AGCATCTACCACTGATGGTGTTGGACGTGATTGGTTGCACCAGCTAAGGGCCAGAC-TCTATCGA
* * * * * * * *
14528547 CAGGCCATCATCCCGATGGTGTCCGAGGTAACATCCTAGAGCAACAACT-GGCTAGCATCTATCG
65 TAGGCTAGCATCCTGATGGTGTCCGAGGTAACATCCTGGGGCAACAA-TGGGCCAGCATCTATCA
* * * *
14528611 TT-AATGGTGGTAGACGCGATTGGCTGCACTAACTAAGGACCAAAGAGGCATTCAGGGGATCAAG
129 TTGAATGGTGGTGGATGCGATTGGCTGCAC-AACAAAGGACCAAAGA-GTATTCAGGGGATCAAG
* * ***
14528675 AGCCAGGCACCTACCAAGGAGGAGCTTAAGGTAACATCAAGCA-CTGAGGGGCCAGCACTAGCCA
192 TGCCAGGCACCTACCAAGGAGGAGCTTAAGGCAACATC-AGCATC-GAGGGGCCAGCACCCTCCA
** * * * * *
14528739 GGGATGTGTCCAAGGCAACATCCAAAGGGAATAATAAGCC
255 AAGAGGTGTCCAAGGCAACATCCCAAGGTAACAATGAGCC
* * * * * * *
14528779 AGCATTTGCCACTGATAGTGTTTGA--TGCAGTTGGGTACACCAGCCAAGGGCCAGA-TGCTATC
1 AGCATCTACCACTGATGGTGTTGGACGTG-A-TTGGTTGCACCAGCTAAGGGCCAGACT-CTATC
14528841 GA
63 GA
14528843 CAATGTTCAA
Statistics
Matches: 1398, Mismatches: 366, Indels: 147
0.73 0.19 0.08
Matches are distributed among these distances:
292 4 0.00
293 24 0.02
294 192 0.14
295 339 0.24
296 583 0.42
297 247 0.18
298 8 0.01
299 1 0.00
ACGTcount: A:0.29, C:0.22, G:0.28, T:0.21
Consensus pattern (294 bp):
AGCATCTACCACTGATGGTGTTGGACGTGATTGGTTGCACCAGCTAAGGGCCAGACTCTATCGAT
AGGCTAGCATCCTGATGGTGTCCGAGGTAACATCCTGGGGCAACAATGGGCCAGCATCTATCATT
GAATGGTGGTGGATGCGATTGGCTGCACAACAAAGGACCAAAGAGTATTCAGGGGATCAAGTGCC
AGGCACCTACCAAGGAGGAGCTTAAGGCAACATCAGCATCGAGGGGCCAGCACCCTCCAAAGAGG
TGTCCAAGGCAACATCCCAAGGTAACAATGAGCC
Found at i:14528534 original size:296 final size:293
Alignment explanation
Indices: 14526402--14528732 Score: 812
Period size: 296 Copynumber: 7.9 Consensus size: 293
14526392 ATCCTAAAGC
* ** * * *
14526402 AACAAT-AGGCCAGCATCTACCACCGATGGTGTTGGATATGATTGGCTGCACTAGCCAAGAGCCA
1 AACAATGA-GCCAGCATCTACCACTGATGGTGTTGGACGTGATTGG-TGCACCAGCTAAGGGCCA
* * * * * * ** * * * *
14526466 GACACTATCGACGAGCTAGCATCCTAATGGTCTTAAAGGTAATATCTCA-GGGTAACAACGGG-C
64 GACTCTATCGATGGGCTAGCATCCTGATAGTGTCCAAGGAAACATC-CAGGGGCAACAATGGGCC
* ** * ** * * *
14526529 TGACATCTACCTCTG-ATGGTGGTGGATGTGATTAGTCACACCAA-CCAAGGACCAAAGATGTGT
128 AG-CATCTACAACCGAAT-GTGGTGGATGCAATTGGCCACA-CAAGCCAAGGACCAAAGAGGTG-
* * * * * * ** *
14526592 TTGGGGGATCAAGAGCTAGGC-CACTGACCAAAGAGGTGCTCGAGGTAACATTGGGCACCGAGGG
189 TTAGGGGATCAAGTGCCAGGCAC-CTG-CCAAGGAGGAGCT-GAGGCAACATCAGGCATCGAGGG
* * * * ** * * ** * *
14526656 GCCAACACCTACTAGGGAAGTGTCTGAGGTAACATCCCGGGGC
251 GCTAGCACCCACAAAAGAGGTGTCTGAGGCAACATTTCGAGGT
* * * * * * **
14526699 AATAA-CAGGCTAGCATTTACCACTGATGGTGTTGGACGTGGTTGGTTGCACCAGCCAAAAGCCA
1 AACAATGA-GCCAGCATCTACCACTGATGGTGTTGGACGTGATTGG-TGCACCAGCTAAGGGCCA
* * * ** * *
14526763 GA-TGCTATTGATAGGCTAGCATCCCT-ATGGTGTCTGAGGTAACATCCTA-GGGCAACAATGGA
64 GACT-CTATCGATGGGCTAGCAT-CCTGATAGTGTCCAAGGAAACATCC-AGGGGCAACAATGGG
* * * * * * * *
14526825 CCTGTATCTACCACC-AATGGTGGTGGATCCAATTGGCC-TACTAGCTAAGGA-CAAATGAGATG
126 CCAGCATCTACAACCGAAT-GTGGTGGATGCAATTGGCCACACAAGCCAAGGACCAAA-GAGGTG
* * * * * * * *
14526887 TCCAGGGGATCAAGCGTCAGGCACTCT-CCAGGGAGGAGCTCGAGGCAATAAC-GTGCAGCGAAG
189 T-TAGGGGATCAAGTGCCAGGCAC-CTGCCAAGGAGGAGCT-GAGGCAACATCAG-GCATCGAGG
* * * * * * * *
14526950 GGCCAACACTCACCAAAGAGGTGTCTAAAGCAACATCTCGAGGC
250 GGCTAGCACCCACAAAAGAGGTGTCTGAGGCAACATTTCGAGGT
* * * * * * * * *
14526994 AACAATGGGCCAGTATCTATCACTAATGGTGTTGGACATGATTGCTCGCACTAGCCAAGGGCTAG
1 AACAATGAGCCAGCATCTACCACTGATGGTGTTGGACGTGATTGGT-GCACCAGCTAAGGGCCAG
* * * * * * * ***
14527059 ACACTATCAATGGGCTAGCAACCCT-ATAGTGTCTAAGGTAACATCCTA-GGGTAATAACAAGCC
65 ACTCTATCGATGGGCTAGC-ATCCTGATAGTGTCCAAGGAAACATCC-AGGGGCAACAATGGGCC
* * *** * * **
14527122 AGTATCTACCACC-AATGGTGGTGGA--CATGATTGGTTGCACCAGCTAAGGATGAATA-AGGTA
128 AGCATCTACAACCGAAT-GTGGTGGATGCA--ATTGGCCACACAAGCCAAGGACCAA-AGAGGT-
* * * * * * * * * * *
14527183 TTTAAGGGGATCAACTGCTAGGTAGC-ACCAAAGAGGAGCTTAAGGCAACATCAGACATTGAGCG
188 GTT-AGGGGATCAAGTGCCAGGCACCTGCCAAGGAGGAGC-TGAGGCAACATCAGGCATCGAGGG
* * * * * * * *
14527247 GCCAGCACTCACCAGAA-AGGTGTTTAAGGCAACA-TCCTGATGC
251 GCTAGCACCCA-CAAAAGAGGTGTCTGAGGCAACATTTC-GAGGT
* * * ** * * * * * *
14527290 AACAACGTGCCAACATCTA--GTTAATGGTGTTGGATGGGATTAGCGACACCAG-TCATGGGCCA
1 AACAATGAGCCAGCATCTACCACTGATGGTGTTGGACGTGATTGGTG-CACCAGCT-AAGGGCCA
* * * * * *
14527352 GA-TGCTATTGATAGGCTAGCATCCTGATAATGTCTAAGGTAACATCCCA-AGGCAACAATGGGC
64 GACT-CTATCGATGGGCTAGCATCCTGATAGTGTCCAAGGAAACAT-CCAGGGGCAACAATGGGC
* *** ** * *
14527415 CAGCATTTACTGTCG-ATGGTGGTGGATGCAATTGGCTGCCCTAA-CCAAGGACCAAAGTGGTGT
127 CAGCATCTACAACCGAAT-GTGGTGGATGCAATTGGCCACAC-AAGCCAAGGACCAAAGAGGTGT
* * * * * * * * * *
14527478 TCGGGGTATCAATTGCTAGGCTCCTACTAAGGTGGAGCTTAAGGCAACATCGGGCA-CTGAAGGG
190 TAGGGG-ATCAAGTGCCAGGCACCTGCCAAGGAGGAGC-TGAGGCAACATCAGGCATC-GAGGGG
* * * ** * * * * *
14527542 CCAGAACCCATCAGAA-AGGTGTCCAAAGAAACA-TCCTGGGGC
252 CTAGCACCCA-CAAAAGAGGTGTCTGAGGCAACATTTC-GAGGT
* * * ** * * * * * * *
14527584 AATAACGGGCCAATATCTACCATTGATGGTGTTAGATGTGATTGACTACACCTG-TCATGGGCCA
1 AACAATGAGCCAGCATCTACCACTGATGGTGTTGGACGTGATTG-GTGCACCAGCT-AAGGGCCA
* * * * * * * * *
14527648 AACAT-TATCGATGAGCTAGCATCCTAATGGTCTCTAAGGCAACATCCCA-AGGTAACAATGGGC
64 GAC-TCTATCGATGGGCTAGCATCCTGATAGTGTCCAAGGAAACAT-CCAGGGGCAACAATGGGC
* * * * * ** * *** * * *
14527711 CAGCATTTACCA-CTAATGGTCGTGGACGTGATTAGTTGCA-TAGCCAAAGAGCAAAGAGGTGCT
127 CAGCATCTACAACCGAAT-GTGGTGGATGCAATTGGCCACACAAGCCAAGGACCAAAGAGGTG-T
** * * * * *
14527774 TAGGGGATCAAGTGCCAGGCACCCACGAAGGAGGAGCTTAAGGCAACATCATGCATTGAGGGGCC
190 TAGGGGATCAAGTGCCAGGCACCTGCCAAGGAGGAGC-TGAGGCAACATCAGGCATCGAGGGGCT
* ** ** * *
14527839 AACACCCGTAAAAGAGGTGT-TCGAGGCAACATCCCAAGGC
254 AGCACCCACAAAAGAGGTGTCT-GAGGCAACATTTCGAGGT
*
14527879 AACAATGAGCCAGCATCTACCACTGATGTTGTTGGACGTGATTGGTTGCACCAGCTATA-GGCCA
1 AACAATGAGCCAGCATCTACCACTGATGGTGTTGGACGTGATTGG-TGCACCAGCTA-AGGGCCA
* * ** * * *
14527943 AACTCTATCGATTGGCTAGCATCCTGATAGTGTCTGAGGAAACATGCTGGGGCAATAATGGGCCA
64 GACTCTATCGATGGGCTAGCATCCTGATAGTGTCCAAGGAAACATCCAGGGGCAACAATGGGCCA
* ** ** ** * * * * *
14528008 GCATCTACCATTGAATGTGGTGGATGTGATTGGCTGCACAATCAAAGGACCAAAGAGATAATTTG
129 GCATCTACAACCGAATGTGGTGGATGCAATTGGCCACACAAGCCAAGGACCAAAGAGGT--GTTA
* *
14528073 GGGGATCAAGCGCCAGGCACCTGCCAAGGAGGAGCATGAGGCAACATCAGGCATCGAGGGGTTAG
192 GGGGATCAAGTGCCAGGCACCTGCCAAGGAGGAGC-TGAGGCAACATCAGGCATCGAGGGGCTAG
* * ** ** *
14528138 CACCCTCTAGGGAGGTGTCCAAGCCAACATCTT-GAGGT
256 CACCCACAAAAGAGGTGTCTGAGGCAACAT-TTCGAGGT
* * * * *
14528176 AACAATGAGCCAGCATCTACCGCTGATGGTGTTAGACATGAATGGCTACACCAG-TCAAGGGCCA
1 AACAATGAGCCAGCATCTACCACTGATGGTGTTGGACGTGATTGG-TGCACCAGCT-AAGGGCCA
* * * ** *
14528240 GA-TGCTGTCGATGGGTTAGCAT-CTCGATGGTGTCCAAGGTGACATCCAGTGGCAACAATGGGC
64 GACT-CTATCGATGGGCTAGCATCCT-GATAGTGTCCAAGGAAACATCCAGGGGCAACAATGGGC
* ** *
14528303 CATCATCTGTAACCG-ATGGTGGTGGATGCAATTGGCCACACCAGCCAAGGACCAAAGAGGTGTT
127 CAGCATCTACAACCGAAT-GTGGTGGATGCAATTGGCCACACAAGCCAAGGACCAAAGAGGTGTT
* * * * *
14528367 CAAGGGATCAAGTGCTAGGCACATGCTAAGGAAGAGCTCGAGGCAACATCTA-GCATCGAGGGGC
191 -AGGGGATCAAGTGCCAGGCACCTGCCAAGGAGGAGCT-GAGGCAACATC-AGGCATCGAGGGGC
* *
14528431 TAGCACCCACCAAAGAGGTGTCTGAGGTAACATTTCGAGGT
253 TAGCACCCACAAAAGAGGTGTCTGAGGCAACATTTCGAGGT
* * *
14528472 AACAACGAGCCAGCATCTACCACTGATGGTGTTGGATGTGATTGGTGGCACTAGCTAAGGGCCAG
1 AACAATGAGCCAGCATCTACCACTGATGGTGTTGGACGTGATTGGT-GCACCAGCTAAGGGCCAG
* ** * * * * * * *
14528537 ACAT-TATTGACAGGCCATCATCCCGATGGTGTCCGAGGTAACATCCTA-GAGCAACAACT-GGC
65 AC-TCTATCGATGGGCTAGCATCCTGATAGTGTCCAAGGAAACATCC-AGGGGCAACAA-TGGGC
* * * * * ** * *
14528599 TAGCATCT---ATCGTTAATGGTGGTAGACGCGATTGGCTGCACTAA-CTAAGGACCAAAGAGGC
127 CAGCATCTACAACCG--AAT-GTGGTGGATGCAATTGGCCACAC-AAGCCAAGGACCAAAGAGGT
* * * * * *
14528660 ATTCAGGGGATCAAGAGCCAGGCACCTACCAAGGAGGAGCTTAAGGTAACATCAAGCA-CTGAGG
188 GTT-AGGGGATCAAGTGCCAGGCACCTGCCAAGGAGGAGC-TGAGGCAACATCAGGCATC-GAGG
*
14528724 GGCCAGCAC
250 GGCTAGCAC
14528733 TAGCCAGGGA
Statistics
Matches: 1547, Mismatches: 401, Indels: 173
0.73 0.19 0.08
Matches are distributed among these distances:
292 4 0.00
293 26 0.02
294 197 0.13
295 407 0.26
296 529 0.34
297 375 0.24
298 9 0.01
ACGTcount: A:0.29, C:0.22, G:0.28, T:0.21
Consensus pattern (293 bp):
AACAATGAGCCAGCATCTACCACTGATGGTGTTGGACGTGATTGGTGCACCAGCTAAGGGCCAGA
CTCTATCGATGGGCTAGCATCCTGATAGTGTCCAAGGAAACATCCAGGGGCAACAATGGGCCAGC
ATCTACAACCGAATGTGGTGGATGCAATTGGCCACACAAGCCAAGGACCAAAGAGGTGTTAGGGG
ATCAAGTGCCAGGCACCTGCCAAGGAGGAGCTGAGGCAACATCAGGCATCGAGGGGCTAGCACCC
ACAAAAGAGGTGTCTGAGGCAACATTTCGAGGT
Found at i:14537138 original size:295 final size:292
Alignment explanation
Indices: 14536837--14538147 Score: 910
Period size: 295 Copynumber: 4.5 Consensus size: 292
14536827 CATTAAAGAA
* * * ** * ** *
14536837 GTGTCCAAGGCAACTTCCCAAGGTGACAATAGGCTAGCATTTGTCATCGATGGTGTTGGAAGTGA
1 GTGTCCAAGGTAACATCCCAGGGCAACAATAGGCCAGCATTTACCACCGATGGTGTTGGAAGTGA
* * *
14536902 TTGGTTGCACCAGCCAAGGGCTAGACACAATCAATAGGCCAGCATCTCGATGGTGTCTGAGGCAA
66 TTGGTTGCACCAGCCAAGGGCTAGACACTATCAATAGGCCAGCATCCCGATGGTGTTTGAGGCAA
* * **
14536967 CATCCT-GGGCAACAATGGGCCATAATTTGTTGTCGATGGTGGTGGATGTGATTGGTGGCACCAG
131 CATCCTAGGGCAACAATGGGCCAGAATCTGTTGT-GATGGTGGTGGATGCAATTGGT-GCACCAG
* *
14537031 CCAAGGACCAAAGAGGTGTTCAGCAAATCAAGTGCCAGGCACCTACCAAGGAGTAGCTCGAGGCA
194 CCAAGGACCAAAGAGTTGTTCAG-AAATCAAGTGCCAGGCACCCACCAAGGAGTAGCTCGAGGCA
* * *
14537096 ACATCAGGCACTGAGGGGCTAGCATTTGCCGGGGAG
258 ACAT-AGGCACTGAGGGGCCAGCACTTGCCAGGGAG
** * * ** **
14537132 GTGTCCAAGGTAACATCATAGGGCAACAATATGCCAGCATCTGGCACCGATTATGTTGGACA-TG
1 GTGTCCAAGGTAACATCCCAGGGCAACAATAGGCCAGCATTTACCACCGATGGTGTTGGA-AGTG
* * * * * * * *
14537196 ATTGGCTGCACTAGCTAAGGG-TAAGATACTATCAA-CGAGCCAGTATCCCGATGGTGTCTGTGG
65 ATTGGTTGCACCAGCCAAGGGCT-AGACACTATCAATAG-GCCAGCATCCCGATGGTGTTTGAGG
* * * * * * * ** *
14537259 CAACATCTTAGGCCAACAATGGGCTAGCATCTACTAGTGATGGTGATGGACACAATTGGTTGTAC
128 CAACATCCTAGGGCAACAATGGGCCAGAATCT-GTTGTGATGGTGGTGGATGCAATTGG-TGCAC
*** ** ** ** ** ** *
14537324 CAATAAAAAATTAAAGACATGTTCAAGGGATCAAGTGTGAGGCACCCACCAACGAAG-AGCTCGA
191 CAGCCAAGGACCAAAGAGTTGTTC-AGAAATCAAGTGCCAGGCACCCACCAA-GGAGTAGCTCGA
* * * ** *
14537388 GGCAACAATAAGCA-TCAAAGGGCCAGCACCCGTCAGGGAG
254 GGCAAC-ATAGGCACT-GAGGGGCCAGCACTTGCCAGGGAG
*** * * * * *
14537428 GTGTTTGAGGTAACATCCTAGGGCAACAATGGGCCAACATCTACCACCAATGGTGTTGGACA-TG
1 GTGTCCAAGGTAACATCCCAGGGCAACAATAGGCCAGCATTTACCACCGATGGTGTTGGA-AGTG
* * * * ** * * * *
14537492 AATGATTGCACCAGCCAAGGGGTAAATGCTATCGATGGGCCAACATCCCGATGGTGTTTGAGGTA
65 ATTGGTTGCACCAGCCAAGGGCTAGACACTATCAATAGGCCAGCATCCCGATGGTGTTTGAGGCA
* * * * * *
14537557 ACATCCTAGTGCAACAATGGACCAGCATCTGCAT-TGATGGTGGTAGATGCAATTGGCTACACCA
130 ACATCCTAGGGCAACAATGGGCCAGAATCTG-TTGTGATGGTGGTGGATGCAATTGG-TGCACCA
* * *** * * *
14537621 GCCAAGGACCAAAGAGTTGTTCGGGGAATCAAGTGCCAGGCACTTGCCAATGAGGAGCTTGAGGC
193 GCCAAGGACCAAAGAGTTGTTC-AGAAATCAAGTGCCAGGCACCCACCAAGGAGTAGCTCGAGGC
* * *
14537686 AACATTAGGCACTTAGGGGCCAGTACTTGCTAGGGAG
257 AACA-TAGGCACTGAGGGGCCAGCACTTGCCAGGGAG
* * * * * * * * *
14537723 GTG-CCTGAGGTAACATCTCAGGGTAAGAATAGGCCAACATTTA-CAGTCAATGGTGTTGGATGC
1 GTGTCC-AAGGTAACATCCCAGGGCAACAATAGGCCAGCATTTACCA-CCGATGGTGTTGGAAGT
* * **** * * * *
14537786 AATTAGCCATACCAACCAAGGGC-AAACACTATCAATAGGCCAGCATCTCGATGGTGTTTGAGGT
64 GATTGGTTGCACCAGCCAAGGGCTAGACACTATCAATAGGCCAGCATCCCGATGGTGTTTGAGGC
* * * ** *
14537850 AACATCCTGGGGCAACAATGGGCCA-ACATCTGCTGTCAATGGTGGTGGATGTGATTGGTCGTAC
129 AACATCCTAGGGCAACAATGGGCCAGA-ATCTGTTGT-GATGGTGGTGGATGCAATTGGT-GCAC
* * * * *
14537914 CAGCCAAGGACCAAAGAGTTATT-TGAAGGATCAAGTGCTAGGCACCCATCAAGTAGTAGCTCGA
191 CAGCCAAGGACCAAAGAGTTGTTCAGAA--ATCAAGTGCCAGGCACCCACCAAGGAGTAGCTCGA
**
14537978 GGCAACATAGGGCACTGAGGGGCTGGCACCCTT--CAGGGAG
254 GGCAACATA-GGCACTGAGGGGCCAGCA--CTTGCCAGGGAG
* * * * * *
14538018 GTGTCCAAGGCAACATCTCA-GGCAACAACAGGCTAGCATTTACCACTGATGGTGTTGGATGTGA
1 GTGTCCAAGGTAACATCCCAGGGCAACAATAGGCCAGCATTTACCACCGATGGTGTTGGAAGTGA
** * * * * * * *
14538082 TTGGTCACACCA-ACAAGGACCAGTCATTATCGATAGGCCAGCATCCCAATGGTGTTTGAGGCAA
66 TTGGTTGCACCAGCCAAGGGCTAGACACTATCAATAGGCCAGCATCCCGATGGTGTTTGAGGCAA
14538146 CA
131 CA
14538148 ACGAGCCAAC
Statistics
Matches: 776, Mismatches: 209, Indels: 63
0.74 0.20 0.06
Matches are distributed among these distances:
293 9 0.01
294 151 0.19
295 368 0.47
296 232 0.30
297 16 0.02
ACGTcount: A:0.29, C:0.22, G:0.28, T:0.21
Consensus pattern (292 bp):
GTGTCCAAGGTAACATCCCAGGGCAACAATAGGCCAGCATTTACCACCGATGGTGTTGGAAGTGA
TTGGTTGCACCAGCCAAGGGCTAGACACTATCAATAGGCCAGCATCCCGATGGTGTTTGAGGCAA
CATCCTAGGGCAACAATGGGCCAGAATCTGTTGTGATGGTGGTGGATGCAATTGGTGCACCAGCC
AAGGACCAAAGAGTTGTTCAGAAATCAAGTGCCAGGCACCCACCAAGGAGTAGCTCGAGGCAACA
TAGGCACTGAGGGGCCAGCACTTGCCAGGGAG
Found at i:14539493 original size:82 final size:82
Alignment explanation
Indices: 14539330--14539481 Score: 187
Period size: 82 Copynumber: 1.9 Consensus size: 82
14539320 GGTGTTCGAA
* * *** * **
14539330 GTAACATCCTGAGGCAACAACGGGCTAGCATTTACCATCGATGGTGGTGGATGCAATTGGCTGTA
1 GTAACATCCTGAGGCAACAACAGGCTAGCATCTACCATCGACAATGGTGGACGCAATTGGCTACA
*
14539395 CCATCAAAAGACCAAAG
66 CAATCAAAAGACCAAAG
* * **
14539412 GTAACATCCTGAGGCAACAACAGGCTAGCATCTGCCATTGACAATGGTGGACGTGATTGGCTACA
1 GTAACATCCTGAGGCAACAACAGGCTAGCATCTACCATCGACAATGGTGGACGCAATTGGCTACA
14539477 CAATC
66 CAATC
14539482 CAAGGGCCAA
Statistics
Matches: 57, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
82 57 1.00
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.21
Consensus pattern (82 bp):
GTAACATCCTGAGGCAACAACAGGCTAGCATCTACCATCGACAATGGTGGACGCAATTGGCTACA
CAATCAAAAGACCAAAG
Found at i:14541870 original size:370 final size:370
Alignment explanation
Indices: 14541189--14542413 Score: 2164
Period size: 370 Copynumber: 3.3 Consensus size: 370
14541179 CCCTTAGCCT
* *
14541189 ACAATACCTCACAAGGGTGTGAACCGTGGCGGAAGGCTGATCCGGGACGTCGGAAGGGTGAATGC
1 ACAATACCTCACAAGGGTGTGAACCGTGGCGGAAGGCTGATCTGGGACGCCGGAAGGGTGAATGC
* * *
14541254 CCGGGTCCCGGAGCGGCGTGGGTTCAGAGCTTGAGTCTCGACCCGTGACAAGTGGTATCAGAGCC
66 CCGGGTCCCGGAGCCGCGCGGGTTCGGAGCTTGAGTCTCGACCCGTGACAAGTGGTATCAGAGCC
14541319 AGCCCTAAACCGTTCGATCCACGCCGAGCGCCTCGAGGGAGGTAGGCAGGGTGGCCGGCCTCCGT
131 AGCCCTAAACCGTTCGATCCACGCCGAGCGCCTCGAGGGAGGTAGGCAGGGTGGCCGGCCTCCGT
* *
14541384 GACGAGGGCATCACGAGGTTGGGTGCGGGAGAATGTCACGGACCTAAGGGGGAGTCCTGAATCCC
196 GACGAGGGCGTCACGAGGTTGGGTGCGGGAGAATGTCACGGACCTAAGGGGGAGTCTTGAATCCC
* *
14541449 ACATCGAACATAATAGGAAGGTCCCTGGGGTATAAAAGGGTTCACACCATCTTCGCCTTGCGAGG
261 ACATCGAACATAATAGGAAGGTCCCTGGGGTATAAAAGGGTTCACACCATCTCCGCCTTGTGAGG
* *
14541514 CGCCTTTTATAGGACAAAATCGTGAGGCCAAGGGGGCCAGAGCGG
326 CGCCTTTTGTAGGACAAAACCGTGAGGCCAAGGGGGCCAGAGCGG
*
14541559 ACAATACCTCACAAGGGTGTGAACTGTGGCGGAAGGCTGATCTGGGACGCCGGAAGGGTGAATGC
1 ACAATACCTCACAAGGGTGTGAACCGTGGCGGAAGGCTGATCTGGGACGCCGGAAGGGTGAATGC
* *
14541624 CCGAGTCCCGGAGCCACGCGGGTTCGGAGCTTGAGTCTCGACCCGTGACAAGTGGTATCAGAGCC
66 CCGGGTCCCGGAGCCGCGCGGGTTCGGAGCTTGAGTCTCGACCCGTGACAAGTGGTATCAGAGCC
14541689 AGCCCTAAACCGTTCGATCCACGCCGAGCGCCTCGAGGGAGGTAGGCAGGGTGGCCGGCCTCCGT
131 AGCCCTAAACCGTTCGATCCACGCCGAGCGCCTCGAGGGAGGTAGGCAGGGTGGCCGGCCTCCGT
14541754 GACGAGGGCGTCACGAGGTTGGGTGCGGGAGAATGTCACGGACCTAAGGGGGAGTCTTGAATCCC
196 GACGAGGGCGTCACGAGGTTGGGTGCGGGAGAATGTCACGGACCTAAGGGGGAGTCTTGAATCCC
*
14541819 ACATCGAACATAATAGGAAGGTCCCTGGGGTATAAAAGGGTTCACACCATCTCCTCCTTGTGAGG
261 ACATCGAACATAATAGGAAGGTCCCTGGGGTATAAAAGGGTTCACACCATCTCCGCCTTGTGAGG
14541884 CGCCTTTTGTAGGACAAAACCGTGAGGCCAAGGGGGCCAGAGCGG
326 CGCCTTTTGTAGGACAAAACCGTGAGGCCAAGGGGGCCAGAGCGG
* *
14541929 ACAATACCTCACAAGGGTGTGAACCGTGGTGGAAGGCTGATAC-GGGACGTCGGAAGGGTGAATG
1 ACAATACCTCACAAGGGTGTGAACCGTGGCGGAAGGCTGAT-CTGGGACGCCGGAAGGGTGAATG
14541993 CCCGGGTCCCGGAGCCGCGCGGGTTCGGAGCTTGAGTCTCGACCCGTGACAAGTGGTATCAGAGC
65 CCCGGGTCCCGGAGCCGCGCGGGTTCGGAGCTTGAGTCTCGACCCGTGACAAGTGGTATCAGAGC
*
14542058 CAGCCCTAAACCGTTCGATCCACGTCGAGCGCCTCGAGGGAGGTAGGCAGGGTGGCCGGCCTCCG
130 CAGCCCTAAACCGTTCGATCCACGCCGAGCGCCTCGAGGGAGGTAGGCAGGGTGGCCGGCCTCCG
* *
14542123 TGACGAGGGCGTCATGAGGTTGGTTGCGGGAGAATGTCACGGACCTAAGGGGGAGTCTTGAATCC
195 TGACGAGGGCGTCACGAGGTTGGGTGCGGGAGAATGTCACGGACCTAAGGGGGAGTCTTGAATCC
* *
14542188 CACATCGAACATAATAGGAGGGTCACTGGGGTATAAAAGGGTTCACACCATCTCCGCCTTGTGAG
260 CACATCGAACATAATAGGAAGGTCCCTGGGGTATAAAAGGGTTCACACCATCTCCGCCTTGTGAG
* *
14542253 GCGCCTTTTGTAGGTCAAAACCGTGAGGCCAGGGGGGCCAGAGCGG
325 GCGCCTTTTGTAGGACAAAACCGTGAGGCCAAGGGGGCCAGAGCGG
* * * *
14542299 ACAATACCTCACAAGGGTGTGAACCATGGTGAAAGGCTGATCTGGGACACCGGAAGGGTGAATGC
1 ACAATACCTCACAAGGGTGTGAACCGTGGCGGAAGGCTGATCTGGGACGCCGGAAGGGTGAATGC
* *
14542364 CCGGGTCCTGGAGCCGCGCGGGTTCGGAGCTTGAGTCTTGACCCGTGACA
66 CCGGGTCCCGGAGCCGCGCGGGTTCGGAGCTTGAGTCTCGACCCGTGACA
14542414 CAAGCACCAT
Statistics
Matches: 819, Mismatches: 34, Indels: 4
0.96 0.04 0.00
Matches are distributed among these distances:
369 1 0.00
370 817 1.00
371 1 0.00
ACGTcount: A:0.23, C:0.25, G:0.35, T:0.17
Consensus pattern (370 bp):
ACAATACCTCACAAGGGTGTGAACCGTGGCGGAAGGCTGATCTGGGACGCCGGAAGGGTGAATGC
CCGGGTCCCGGAGCCGCGCGGGTTCGGAGCTTGAGTCTCGACCCGTGACAAGTGGTATCAGAGCC
AGCCCTAAACCGTTCGATCCACGCCGAGCGCCTCGAGGGAGGTAGGCAGGGTGGCCGGCCTCCGT
GACGAGGGCGTCACGAGGTTGGGTGCGGGAGAATGTCACGGACCTAAGGGGGAGTCTTGAATCCC
ACATCGAACATAATAGGAAGGTCCCTGGGGTATAAAAGGGTTCACACCATCTCCGCCTTGTGAGG
CGCCTTTTGTAGGACAAAACCGTGAGGCCAAGGGGGCCAGAGCGG
Found at i:14542979 original size:117 final size:116
Alignment explanation
Indices: 14542761--14543038 Score: 297
Period size: 117 Copynumber: 2.4 Consensus size: 116
14542751 CCCACCAAAG
* * * * *
14542761 AGGTGTCTGAGGCAACATCTCAAGGCAATAATGGGCCAGCATCTGTCATTGATGGTGTTGGACAT
1 AGGTGTCTGAGGCAACATC-CTAGGCAACAATGGGCCAGCATCTGTCATTAAAGGTGGTGGACAT
** ** * *
14542826 GATTGGCTGCACCAGTCAAGGGCCAGACGCTATTGATAGGCCAGCATTCTGA
65 GATTGGCCACACCAACCAAGGGCCAGACGCTATTGATAGGCCAGAATCCTGA
* * *
14542878 AGGTGTCTGAGGTAACATCCTGAGGCAACAGTGGGCCAGCATCTGTCGA-TAAAGGTGGTGGACG
1 AGGTGTCTGAGGCAACATCCT-AGGCAACAATGGGCCAGCATCTGTC-ATTAAAGGTGGTGGACA
* * * * * * *
14542942 TGATTGGCCATACCAACCAAGGGCTAGATGTTGTTGATGGGCTAGAATCCTGA
64 TGATTGGCCACACCAACCAAGGGCCAGACGCTATTGATAGGCCAGAATCCTGA
* **
14542995 TGGTGTCCAAGGCAACATCCTAGGGCAACAATGGGCCAGCATCT
1 AGGTGTCTGAGGCAACATCCTA-GGCAACAATGGGCCAGCATCT
14543039 ACTGTCGATG
Statistics
Matches: 132, Mismatches: 26, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
116 2 0.02
117 129 0.98
118 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (116 bp):
AGGTGTCTGAGGCAACATCCTAGGCAACAATGGGCCAGCATCTGTCATTAAAGGTGGTGGACATG
ATTGGCCACACCAACCAAGGGCCAGACGCTATTGATAGGCCAGAATCCTGA
Found at i:14563064 original size:26 final size:26
Alignment explanation
Indices: 14563025--14563077 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14563015 CCAGTCCGAT
* *
14563025 CTTAGACTGAGAATGAACTTCGTATG
1 CTTAGACTGAGAATGAAATCCGTATG
*
14563051 CTTAGACTGGGAATGAAATCCGTATG
1 CTTAGACTGAGAATGAAATCCGTATG
14563077 C
1 C
14563078 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAAATCCGTATG
Found at i:14563562 original size:26 final size:26
Alignment explanation
Indices: 14563526--14563581 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
14563516 CCAGTCCGAT
14563526 CTTAGACTGGGAATGAACTCAATATG
1 CTTAGACTGGGAATGAACTCAATATG
* * **
14563552 CTTAGATTGGGAATGCACTCCGTATG
1 CTTAGACTGGGAATGAACTCAATATG
14563578 CTTA
1 CTTA
14563582 AGCCAACCCA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAATATG
Found at i:14564423 original size:26 final size:26
Alignment explanation
Indices: 14564385--14564437 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14564375 TCGGTCTGAT
* * *
14564385 CTTAGACTGGGAATGAATTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14564411 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14564437 C
1 C
14564438 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14564694 original size:174 final size:172
Alignment explanation
Indices: 14564237--14564707 Score: 493
Period size: 174 Copynumber: 2.7 Consensus size: 172
14564227 GAACGAGACT
* * * *
14564237 TGCTTTGACT-GGAGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTC
1 TGCTTAGACTAGGA-ATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT-
* * ** * ***
14564301 AGCCGGTCAAAGAGGCAGGATGCACAAGCTGAGGATC-AGCCCGATCCCCCTCTGC-GCTGCTGT
64 AACCGGTCGAAGAGGCATAATGCACAAGCTGAGGATCGA-CCCGGTCCCCCTCTGCTGCTGCAAC
* * * ** * *
14564364 CGATCTTGCTGTCGGTCTGATCTTAGACTGGGAATGAATTTCGTA
128 CGATCTCGCTGTCGATCCGATCTTAGACAAGGAATGAACTCCGTA
* * * *
14564409 TGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGGGTGCGGGCGCTAA
1 TGCTTAGACTAGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTAA
* * ** * *
14564474 GCCAGTCGGAA-AAGCATAATGTGCAAGCCGAGGATCGGCCCGGTCCCCCTCTGCATGCTGCAAC
66 -CCGGTC-GAAGAGGCATAATGCACAAGCTGAGGATCGACCCGGTCCCCCTCTGC-TGCTGCAAC
*
14564538 CGATCTCGCTGTCGATCCGATCTTAGACAAGGAATGCACTCCGTA
128 CGATCTCGCTGTCGATCCGATCTTAGACAAGGAATGAACTCCGTA
* * * *
14564583 TGCTTAGACTTGGAATAAACTTCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGTTGA
1 TGCTTAGACTAGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT-A
* * *
14564648 ACTGGTCGAAGAGGCATAATGCACAAGCTG-GGTATCGACTCGGTCCCCCTTTGCGTGCTG
65 ACCGGTCGAAGAGGCATAATGCACAAGCTGAGG-ATCGACCCGGTCCCCCTCTGC-TGCTG
14564708 TCGATCCTGC
Statistics
Matches: 245, Mismatches: 45, Indels: 16
0.80 0.15 0.05
Matches are distributed among these distances:
171 1 0.00
172 92 0.38
173 10 0.04
174 140 0.57
175 2 0.01
ACGTcount: A:0.24, C:0.26, G:0.27, T:0.22
Consensus pattern (172 bp):
TGCTTAGACTAGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTAA
CCGGTCGAAGAGGCATAATGCACAAGCTGAGGATCGACCCGGTCCCCCTCTGCTGCTGCAACCGA
TCTCGCTGTCGATCCGATCTTAGACAAGGAATGAACTCCGTA
Found at i:14565047 original size:696 final size:701
Alignment explanation
Indices: 14563710--14565063 Score: 1630
Period size: 713 Copynumber: 1.9 Consensus size: 701
14563700 CTTAGATCGA
* *
14563710 GAATGAACTCCGCATGCCTAAGTTAACCCACAAAATGAGCGTGCGGGCGCTCAACCGGCCGAAAG
1 GAATGAACTCCGCATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAACCGGCCGAAAA
* * * ***
14563775 GCAAGATGCGTAAGACGAGATCGACCCAGTCCCTCTCTGCGTGCTGCTGTCGATCCCGCTAACAG
66 GCAAGATGCGCAAGACGAGATCGACCCAGTCCCCCTCTGCATGCTGCAACCGATCCCGCTAACAG
** * *
14563840 TCCGATCTTAGACTGGGAATGAAATCTGAATGCTTAGACTGAGAATGAACTCTATATGCCTAAGT
131 TCCGATCTTAGACAAGGAATGAAATCCGAATGCTTAGACTGAGAATAAACTCTATATGCCTAAGT
* * * *
14563905 CAACCCATGAAACGAGCGTGCGGGCATTGAGCTGATCGAAGAGGCATAATGCGCGAGCCGGGATC
196 CAACCCACGAAACGAGCGTGCGGGCATTGAACTGATCGAAGAGGCATAATGCACAAGCCGGGATC
* * * *
14563970 AGCCCGGTCCCTCTCTGCGTGTTGTCGATCTCGCTATCAGTCCCATTGCCACAACCCTCGGTCCG
261 AGCCCGGTCCCCCTCTGCGTGCTGTCGATCTCGCTACCAGT-CCA-TACCACAACCCTCGGTCCG
* * * * * *
14564035 ACTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGC
324 ACTAGGGCTTAGACAAGGAATGAACTCCGTATACCTAAACCAACCCACGAAACAAACGTACGGGC
* * *
14564100 GCTCAACCAGTCGGAGAGGCAGAATGCGTAAGTCGAGGATCAGCCCGGTCCCTCCCTACGTCCTG
389 GCTCAACCAGTCGGAGAGGCAGAATGCGCAAGTCGAAGATCAGCCCAGTCCCTCCCTACGTCCTG
* * *
14564165 TCGATCCTACTGTTGGTCCTACTACCGCAACCTTTGGTCCGATCTGATCTTAGACTAGGAATGAA
454 TCGATCC-AC--TTGG--C--CTACCGCAACCTTCGATCCGATCTGATCTTAAACTAGGAATGAA
* * *
14564230 CGAGACTTGCTTTGACTGGAGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
512 CAAGACTTGCTTAGACTGGAGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCAG
** * * * *
14564295 GTGCTCAGCCGGTCAAAGAGGCAGGATGCACAAGCTGAGGATCAGCCCGATCCCCCTCTGCGCTG
577 GCACTCAGCCGGCCAAAGAGGCAGAATGCACAAGCTAAGGATCAGCCCGATCCCCCTCTGC-ATG
14564360 CTGTCGATCTTGCTGTCGGTCTGATCTTAGACTGGGAATGAATTTCGTATGCTTAGACTAG
641 CTGTCGATCTTGCTGTCGGTCTGATCTTAGACTGGGAATGAATTTCGTATGCTTAGACTAG
* * * *
14564421 GAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGGGTGCGGGCGCT-AAGCCAGTCGGAA
1 GAATGAACTCCGCATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAA-CC-GGCCGAA
* * * * * *
14564485 AAGCATA-ATGTGCAAGCCGAGGATCGGCCCGGTCCCCCTCTGCATGCTGCAACCGATCTCGCTG
64 AAGCA-AGATGCGCAAGACGA-GATCGACCCAGTCCCCCTCTGCATGCTGCAACCGATCCCGCTA
* * * * *
14564549 TC-GATCCGATCTTAGACAAGGAATGCACTCCGTATGCTTAGACTTG-GAATAAACT-TCGTATG
127 ACAG-TCCGATCTTAGACAAGGAATGAAATCCGAATGCTTAGAC-TGAGAATAAACTCT-ATATG
* * *
14564611 CCTAAGTCAACCCACGAAACGAGTGTGCGGGCGTTGAACTGGTCGAAGAGGCATAATGCACAAGC
189 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCATTGAACTGATCGAAGAGGCATAATGCACAAGC
* * * * *
14564676 TGGGTATC-GACTCGGTCCCCCTTTGCGTGCTGTCGATC-CTGCTGCCAGT-C-TACCACAACCT
254 CGGG-ATCAG-CCCGGTCCCCCTCTGCGTGCTGTCGATCTC-GCTACCAGTCCATACCACAACCC
*
14564737 TCGGTCCGACT-GGGCTTAGACAAGGAATGAACTCCGTATACCTAAACCAACCCACGAAATAAAC
316 TCGGTCCGACTAGGGCTTAGACAAGGAATGAACTCCGTATACCTAAACCAACCCACGAAACAAAC
* *
14564801 GTACGGGCGCTGAACCAG-CTGGAGAGGCAGAATGCGCAAGTCGAAGATCGGCCCAGTCCC-CCC
381 GTACGGGCGCTCAACCAGTC-GGAGAGGCAGAATGCGCAAGTCGAAGATCAGCCCAGTCCCTCCC
* * * * *
14564864 TACGTGCTG-CTGAT-C-C-T-G-CTGCCGCAACCTTCGATTCGGTCTGATCTTAAACTGGGAAT
445 TACGTCCTGTC-GATCCACTTGGCCTACCGCAACCTTCGATCCGATCTGATCTTAAACTAGGAAT
* * *
14564923 GAACAAGACTTGCTTAGACTGGGGATGAACTCCATATGCCTGAGTCAACCCATGAAACGAGCGTG
509 GAACAAGACTTGCTTAGACTGGAGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTG
* * ** ** *
14564988 CAGGCACTCAGCCGGCCAGAGAGGTAGAATGTGCAAG-TCAAGGATTGGCCCGGTCCCCCTCTGC
574 CAGGCACTCAGCCGGCCAAAGAGGCAGAATGCACAAGCT-AAGGATCAGCCCGATCCCCCTCTGC
14565052 ATGCTGTCGATC
638 ATGCTGTCGATC
14565064 CCACTGTGGG
Statistics
Matches: 548, Mismatches: 82, Indels: 42
0.82 0.12 0.06
Matches are distributed among these distances:
695 12 0.02
696 143 0.26
701 1 0.00
702 1 0.00
705 1 0.00
707 2 0.00
708 15 0.03
709 99 0.18
710 22 0.04
711 50 0.09
712 22 0.04
713 144 0.26
714 36 0.07
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (701 bp):
GAATGAACTCCGCATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAACCGGCCGAAAA
GCAAGATGCGCAAGACGAGATCGACCCAGTCCCCCTCTGCATGCTGCAACCGATCCCGCTAACAG
TCCGATCTTAGACAAGGAATGAAATCCGAATGCTTAGACTGAGAATAAACTCTATATGCCTAAGT
CAACCCACGAAACGAGCGTGCGGGCATTGAACTGATCGAAGAGGCATAATGCACAAGCCGGGATC
AGCCCGGTCCCCCTCTGCGTGCTGTCGATCTCGCTACCAGTCCATACCACAACCCTCGGTCCGAC
TAGGGCTTAGACAAGGAATGAACTCCGTATACCTAAACCAACCCACGAAACAAACGTACGGGCGC
TCAACCAGTCGGAGAGGCAGAATGCGCAAGTCGAAGATCAGCCCAGTCCCTCCCTACGTCCTGTC
GATCCACTTGGCCTACCGCAACCTTCGATCCGATCTGATCTTAAACTAGGAATGAACAAGACTTG
CTTAGACTGGAGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCACTCAGC
CGGCCAAAGAGGCAGAATGCACAAGCTAAGGATCAGCCCGATCCCCCTCTGCATGCTGTCGATCT
TGCTGTCGGTCTGATCTTAGACTGGGAATGAATTTCGTATGCTTAGACTAG
Found at i:14566046 original size:148 final size:148
Alignment explanation
Indices: 14565784--14566055 Score: 337
Period size: 148 Copynumber: 1.8 Consensus size: 148
14565774 CCGGTTGGGA
* * * *
14565784 CTTAGACTGGGAATGAACTCCGCATGCCTAAGTCAACCCACGAAACGAGTGTGCGGCCGCTTAGC
1 CTTAGACTGGGAATGAACTCCGCATGCCTAAGTCAACCCACAAAACGAGCGTACGGCCGCTGAGC
** * * * * *
14565849 CGGCCGGAGAAGCAGGATGCGCAAGACAAGGATCGGCCCAGTCCTCCTCTGCGTGCTGCTGTCGA
66 CGGCCGGAGAAGCAAAATGCGCAACACAAGGATCAGCCCAGTCCCCCTCTACGTACTGCTGTCGA
14565914 TCCTGCTGCCGGTCTGAT
131 TCCTGCTGCCGGTCTGAT
* * * *
14565932 CTTAGACTGGGAATGAATTCTGTATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGCATGCCTAAGTCAACCCACAAAACGAGCGTACGGCCGCTGAGC
** * * * * * *
14565997 CGGTTGGAGAGGCAAAATGCGTAACCCGAGGATCAGCTCGGTCCCCCTCTACGTACTGC
66 CGGCCGGAGAAGCAAAATGCGCAACACAAGGATCAGCCCAGTCCCCCTCTACGTACTGC
14566056 CAATCCGGCT
Statistics
Matches: 101, Mismatches: 23, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
148 101 1.00
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.19
Consensus pattern (148 bp):
CTTAGACTGGGAATGAACTCCGCATGCCTAAGTCAACCCACAAAACGAGCGTACGGCCGCTGAGC
CGGCCGGAGAAGCAAAATGCGCAACACAAGGATCAGCCCAGTCCCCCTCTACGTACTGCTGTCGA
TCCTGCTGCCGGTCTGAT
Found at i:14566443 original size:197 final size:197
Alignment explanation
Indices: 14566115--14566488 Score: 509
Period size: 197 Copynumber: 1.9 Consensus size: 197
14566105 TAGACAAGGA
* * **
14566115 ATGAACTCTGTATGCCTAAGCCAACCTATGAAACGAGCGTGCGGGTGCTCAACCGGCTGGAGAGG
1 ATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGAGG
* ** * * *
14566180 TAGAATACGCAAGTCGGGGATCGGCTTAGTCCTCCCCTGCGTGCTGTCGATCTTGATGCTGGTCC
66 TAGAATACGCAAGTCGGGGATCGCCCGAGTCCTCCCCTGCGTGCTGCCGATCCTGATGCAGGTCC
* *
14566245 TGCTACCGCAACCCTTGGTCCCGTTTGATCTTAGACTGGGAATGAACGAGACTTGCTTAGACTGG
131 TGCTACCGCAACCCTTGATCCCGTCTGATCTTAGACTGGGAATGAACGAGACTTGCTTAGACTGG
14566310 GG
196 GG
* * * *
14566312 ATGAACTTTGTATGCTTAAGTCAACCCATGAAACGAGCGTGTGGGCGCTCAACCGGCCAGAGAGG
1 ATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGAGG
** *
14566377 TAGAATGTGCAAGTCGGGGATCGACCCGA-TCC-CCCTCTGCGTGCTGCCGATCCTGCTGCAGGT
66 TAGAATACGCAAGTCGGGGATCG-CCCGAGTCCTCCC-CTGCGTGCTGCCGATCCTGATGCAGGT
* ** *
14566440 CCTGCTATCGCAACCCTTGATCTGGTCTGATCTTAGATTGGGAATGAAC
129 CCTGCTACCGCAACCCTTGATCCCGTCTGATCTTAGACTGGGAATGAAC
14566489 TTCGTATGCC
Statistics
Matches: 152, Mismatches: 23, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
196 3 0.02
197 147 0.97
198 2 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (197 bp):
ATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGAGG
TAGAATACGCAAGTCGGGGATCGCCCGAGTCCTCCCCTGCGTGCTGCCGATCCTGATGCAGGTCC
TGCTACCGCAACCCTTGATCCCGTCTGATCTTAGACTGGGAATGAACGAGACTTGCTTAGACTGG
GG
Found at i:14567655 original size:171 final size:171
Alignment explanation
Indices: 14567337--14567657 Score: 378
Period size: 171 Copynumber: 1.9 Consensus size: 171
14567327 TCTTAGACTG
* ** * * *
14567337 GGAATGAACTTCGTATGCCTAAGTTAACCCATGAAACAAGCGTGCCGATGCCGAGCCGATCAGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCCGATGCCGAACCGACCAGAG
* * * ** *
14567402 AGGCATAATACGTAAGTCGAGGATCGACCCGATCCCCTTCTGCGTGCTGTCGATCCCGCTGTCGG
66 AGGCAAAATACGTAAGTCAAGGATCGACCCGATCCCCCTCTGCGTGCTACCGATCCCACTGTCGG
14567467 TCCCGCTACCACAACCCTCAATCCGGCTGGGGCTTACACAT
131 TCCCGCTACCACAACCCTCAATCCGGCTGGGGCTTACACAT
* * * *
14567508 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTC-AACCGACCGGA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCCGATGC-CGAACCGACCAGA
* * ** *
14567572 GAGGCAAAATTCGTAAGTTAAGGATCGATTCGATCCCCC-CTTGCGTGCTACCGATCCTACTG-C
65 GAGGCAAAATACGTAAGTCAAGGATCGACCCGATCCCCCTC-TGCGTGCTACCGATCCCACTGTC
* * *
14567635 TGGTCCTGCTGCCGCAACCCTCA
129 -GGTCCCGCTACCACAACCCTCA
14567658 GCCCGGTCTG
Statistics
Matches: 123, Mismatches: 24, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
170 2 0.02
171 120 0.98
172 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.25, T:0.20
Consensus pattern (171 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCCGATGCCGAACCGACCAGAG
AGGCAAAATACGTAAGTCAAGGATCGACCCGATCCCCCTCTGCGTGCTACCGATCCCACTGTCGG
TCCCGCTACCACAACCCTCAATCCGGCTGGGGCTTACACAT
Found at i:14568065 original size:26 final size:26
Alignment explanation
Indices: 14568036--14568087 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
14568026 CGGTCCGATA
14568036 TTAGACTGGGAATCAACTCCGTATGC
1 TTAGACTGGGAATCAACTCCGTATGC
*
14568062 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATCAACTCCGTATGC
14568088 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATCAACTCCGTATGC
Found at i:14570139 original size:171 final size:169
Alignment explanation
Indices: 14569838--14570366 Score: 519
Period size: 171 Copynumber: 3.1 Consensus size: 169
14569828 ATGAGACTTG
* * * * **
14569838 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTAAACCCATGAAACGAGCGTGCGACGCTCAGTC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCTATGAAACGAGCGTGCGACGCTCAACC
* ** * * **
14569903 GACCAGAGAGGTAAAATGTGCAAGCTGGGGATCAGCCCGATCCCCCTCTATGTGCTGTCGATCCC
66 GATCAGAGAGGTAAAATGCACAAGCTGGGGATCAACTCGATCCCCCTCTGCGTGCTGTCGATCCC
* *
14569968 GTTACGGGTCCTACTACCGCAACCCTCGATCAGGTCTGAT
131 GCTAC-GGTCCTACTGCCGCAACCCTCGATCAGGTCTGAT
* * * *
14570008 CTTAGACTGGGAATGAACTTTGTATGCCTAAGTCAACCTATGAAACGAGCATGCGACCACTGAAC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCTATGAAACGAGCGTGCGA-CGCTCAAC
* * ** * *
14570073 CGATCAGAGAGGCATAACACACAAGCTAGGGATCAACTCGATCCCCCTCTGCGTGCTGTTGATCC
65 CGATCAGAGAGGTAAAATGCACAAGCTGGGGATCAACTCGATCCCCCTCTGCGTGCTGTCGATCC
* * ** * * **
14570138 CGCTATCGGTCCCATTGCCATAACCTTCGATCTGG-CTGGGG
130 CGCTA-CGGTCCTACTGCCGCAACCCTCGATCAGGTCT-GAT
* * * * **
14570179 CTTAGACAT-GTAGTGAACTCTGTATGCCTAAGCCAA-CTCACGAAACGAGCGTGCAGGTGCTCA
1 CTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCT-ATGAAACGAGCGTGC-GACGCTCA
* * * *
14570242 ACCGATCGGAGAGGTAGAATGCACAAG-TCGGGGATCGACTCGATCCCCCT-TGCGTGCTATCGA
63 ACCGATCAGAGAGGTAAAATGCACAAGCT-GGGGATCAACTCGATCCCCCTCTGCGTGCTGTCGA
* * *
14570305 TCCTGCTACTGGTCCTACTGTCGCAACCCTCGATCCGGTCTGAT
127 TCCCGCTAC-GGTCCTACTGCCGCAACCCTCGATCAGGTCTGAT
*
14570349 CTTACACTGGGAATGAAC
1 CTTAGACTGGGAATGAAC
14570367 GAGACTTGCT
Statistics
Matches: 284, Mismatches: 65, Indels: 20
0.77 0.18 0.05
Matches are distributed among these distances:
169 2 0.01
170 108 0.38
171 171 0.60
172 3 0.01
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (169 bp):
CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCTATGAAACGAGCGTGCGACGCTCAACC
GATCAGAGAGGTAAAATGCACAAGCTGGGGATCAACTCGATCCCCCTCTGCGTGCTGTCGATCCC
GCTACGGTCCTACTGCCGCAACCCTCGATCAGGTCTGAT
Found at i:14575252 original size:180 final size:180
Alignment explanation
Indices: 14574930--14575413 Score: 506
Period size: 180 Copynumber: 2.7 Consensus size: 180
14574920 TTGCCTAGAT
* * * * * *
14574930 CACCATCGGCACAAGATGGCCCCTGGTGTGGGCGGTTGCATCGAACACCATCGACACATGTTGGG
1 CACCATCGACACAAGATGGCCCCTGGTGTGGGCAGTTGCCTTGAACACCATCGACACATGATGGC
** * * * * * * * *
14574995 CTGTGTTACGGGCGGTTGCCTTGACCACCATCGGCACATG-TCGAGCCTTGGTGTGAGCGGTTGC
66 CCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACATGCT-GGGCCTTGGTGTGGGCAGTTAC
* * * * * *
14575059 CTTGAATACCATCGACACAAGCTGGACCTTGGTGCGGGCTCTTACCTTGAC
130 CTCGAACACCATCGACACAAGATGGACCTTGGTGCAGGCGCTTACCTCGAC
* ** * *
14575110 CACCATCGACAGAAGATGGCCCCTGGTACGGGCAGTTGCCTTGAACACCATCGACACGTGCTGGC
1 CACCATCGACACAAGATGGCCCCTGGTGTGGGCAGTTGCCTTGAACACCATCGACACATGATGGC
*
14575175 CCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACGTGCTGGGCCTTGGTGTGGGCAGTTACC
66 CCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACATGCTGGGCCTTGGTGTGGGCAGTTACC
* * * * *
14575240 TCGACCACCATCGACAGAAGATGGCCCTTGGTGCAGGCGGTTACCTCGAG
131 TCGAACACCATCGACACAAGATGGACCTTGGTGCAGGCGCTTACCTCGAC
** * * ** * * * **
14575290 CACCATCGAC-CTAAGCCGACCCTTGGTGTGGGCTCTTACCTTGACCACCATCGACAAAAAATGG
1 CACCATCGACAC-AAGATGGCCCCTGGTGTGGGCAGTTGCCTTGAACACCATCGACACATGATGG
* *
14575354 CCCCTGGTGTGGGCGGTTGCCTC-AGACACCATCGGCACATGCCGGGCCTTGGTGTGGGCA
65 CCCCTGGTGCGGGCGGTTGCCTCGA-ACACCATCGGCACATGCTGGGCCTTGGTGTGGGCA
14575414 CATGGCTCGA
Statistics
Matches: 250, Mismatches: 51, Indels: 6
0.81 0.17 0.02
Matches are distributed among these distances:
179 1 0.00
180 248 0.99
181 1 0.00
ACGTcount: A:0.19, C:0.30, G:0.30, T:0.21
Consensus pattern (180 bp):
CACCATCGACACAAGATGGCCCCTGGTGTGGGCAGTTGCCTTGAACACCATCGACACATGATGGC
CCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACATGCTGGGCCTTGGTGTGGGCAGTTACC
TCGAACACCATCGACACAAGATGGACCTTGGTGCAGGCGCTTACCTCGAC
Found at i:14575407 original size:45 final size:45
Alignment explanation
Indices: 14574917--14575412 Score: 327
Period size: 45 Copynumber: 11.0 Consensus size: 45
14574907 CTAGTGCAGA
* * * * *
14574917 CGGTTGCCTAGATCACCATCGGCACAAGATGGCCCCTGGTGTGGG
1 CGGTTGCCTTGACCACCATCGACACAAGCTGGCCCTTGGTGTGGG
* * * * * * * **
14574962 CGGTTGCATCGAACACCATCGACACATGTTGG-GCTGTGTTACGGG
1 CGGTTGCCTTGACCACCATCGACACAAGCTGGCCCT-TGGTGTGGG
* * *
14575007 CGGTTGCCTTGACCACCATCGGCACATG-TCGAG-CCTTGGTGTGAG
1 CGGTTGCCTTGACCACCATCGACACAAGCT-G-GCCCTTGGTGTGGG
** * *
14575052 CGGTTGCCTTGAATACCATCGACACAAGCTGGACCTTGGTGCGGG
1 CGGTTGCCTTGACCACCATCGACACAAGCTGGCCCTTGGTGTGGG
** * * * * **
14575097 CTCTTACCTTGACCACCATCGACAGAAGATGGCCCCTGGTACGGG
1 CGGTTGCCTTGACCACCATCGACACAAGCTGGCCCTTGGTGTGGG
* * ** * *
14575142 CAGTTGCCTTGAACACCATCGACACGTGCTGGCCCCTGGTGCGGG
1 CGGTTGCCTTGACCACCATCGACACAAGCTGGCCCTTGGTGTGGG
* * * ** *
14575187 CGGTTGCCTCGAACACCATCGGCACGTGCTGGGCCTTGGTGTGGG
1 CGGTTGCCTTGACCACCATCGACACAAGCTGGCCCTTGGTGTGGG
* * * * * **
14575232 CAGTTACCTCGACCACCATCGACAGAAGATGGCCCTTGGTGCAGG
1 CGGTTGCCTTGACCACCATCGACACAAGCTGGCCCTTGGTGTGGG
* * * * *
14575277 CGGTTACCTCGAGCACCATCGAC-CTAAGCCGACCCTTGGTGTGGG
1 CGGTTGCCTTGACCACCATCGACAC-AAGCTGGCCCTTGGTGTGGG
** * * ** *
14575322 CTCTTACCTTGACCACCATCGACAAAAAATGGCCCCTGGTGTGGG
1 CGGTTGCCTTGACCACCATCGACACAAGCTGGCCCTTGGTGTGGG
* * * * *
14575367 CGGTTGCCTCAGA-CACCATCGGCACATGCCGGGCCTTGGTGTGGG
1 CGGTTGCCT-TGACCACCATCGACACAAGCTGGCCCTTGGTGTGGG
14575412 C
1 C
14575413 ACATGGCTCG
Statistics
Matches: 351, Mismatches: 92, Indels: 16
0.76 0.20 0.03
Matches are distributed among these distances:
44 3 0.01
45 342 0.97
46 6 0.02
ACGTcount: A:0.18, C:0.30, G:0.30, T:0.21
Consensus pattern (45 bp):
CGGTTGCCTTGACCACCATCGACACAAGCTGGCCCTTGGTGTGGG
Found at i:14584846 original size:135 final size:134
Alignment explanation
Indices: 14584595--14584943 Score: 321
Period size: 135 Copynumber: 2.6 Consensus size: 134
14584585 GGCTGCCATT
* * * * *
14584595 TGGTACGGGCACTTGCCTCGACCGCCATCGGCACAAGCTGGACCCTAGTGCG-G-ATGGTTGCCT
1 TGGTACGGGCAGTTGCCTCGACCACCATC-GCACATGCTGGACCTTGGTGCGAGCA--GTTGCCT
* * * * * *
14584658 CGATCACTATCAGCACAAGATGGCCCCTGGTGAGGGCGATTGCATGGAACACCATCGATACATA-
63 CGAACACCATCGGCACAAGACGGCCCCTGGTGAGGGCGATTGCATCGAACACCATCGACACA-AG
* ***
14584722 CTGGGTTA
127 ATGGCCCA
*
14584730 TGGTACGGGCAGTTGCCTCGACCACCATCAGCACATGCT-GAGCCTTGGTGCGAGCAGTTGCCTT
1 TGGTACGGGCAGTTGCCTCGACCACCATC-GCACATGCTGGA-CCTTGGTGCGAGCAGTTGCCTC
* * * ** * * *
14584794 GAACACCATCGGCACAAGCCGGCCCTTGGTGCGGGCTCTTGCCTCGACCACCATCGACAGAAGAT
64 GAACACCATCGGCACAAGACGGCCCCTGGTGAGGGCGATTGCATCGAACACCATCGACACAAGAT
*
14584859 GGCCCC
129 GGCCCA
* * * * *
14584865 TGTTACGGGCGGTTGCCTCGAACACCATCGACACATGCTGGCCCTTGGTG-TAGCCAGTTGCCTC
1 TGGTACGGGCAGTTGCCTCGACCACCATCG-CACATGCTGGACCTTGGTGCGAG-CAGTTGCCTC
14584929 GAACACCATCGGCAC
64 GAACACCATCGGCAC
14584944 GTGCTGGGCC
Statistics
Matches: 175, Mismatches: 32, Indels: 14
0.79 0.14 0.06
Matches are distributed among these distances:
134 6 0.03
135 166 0.95
136 2 0.01
137 1 0.01
ACGTcount: A:0.20, C:0.32, G:0.28, T:0.20
Consensus pattern (134 bp):
TGGTACGGGCAGTTGCCTCGACCACCATCGCACATGCTGGACCTTGGTGCGAGCAGTTGCCTCGA
ACACCATCGGCACAAGACGGCCCCTGGTGAGGGCGATTGCATCGAACACCATCGACACAAGATGG
CCCA
Found at i:14584956 original size:135 final size:134
Alignment explanation
Indices: 14584730--14585074 Score: 370
Period size: 135 Copynumber: 2.6 Consensus size: 134
14584720 TACTGGGTTA
* *
14584730 TGGTACGGGCAGTTGCCTCGACCACCATC-AGCACATGCTGAG-CCTTGGTGCGAGCAGTTGCCT
1 TGGTACGGGCGGTTGCCTCGAACACCATCGA-CACATGCTG-GCCCTTGGTGC-AGCAGTTGCCT
* * * * * * *
14584793 TGAACACCATCGGCACAAGCCGGCCCTTGGTGCGGGCTCTTGCCTCGACCACCATCGACAGAAGA
63 CGAACACCATCGGCACAAGCCGGCCCTTGGTGCAGGCGCTTACCTCAACCACCATCAACAGAAAA
14584858 TGGCCCC
128 TGGCCCC
* *
14584865 TGTTACGGGCGGTTGCCTCGAACACCATCGACACATGCTGGCCCTTGGTGTAGCCAGTTGCCTCG
1 TGGTACGGGCGGTTGCCTCGAACACCATCGACACATGCTGGCCCTTGGTGCAG-CAGTTGCCTCG
** * * *
14584930 AACACCATCGGCACGTGCTGGGCCTTGGTGCAGGCGGTTACCTCAACCACCATCAACAGAAAATG
65 AACACCATCGGCACAAGCCGGCCCTTGGTGCAGGCGCTTACCTCAACCACCATCAACAGAAAATG
*
14584995 GCCCT
130 GCCCC
** * * * * * * * **
14585000 TGGTGTGGGCGGTTGCCTTGAGCACTATCGGCATAAGCCGGCCCTTGGTGCAGGCTCTTGCCTCG
1 TGGTACGGGCGGTTGCCTCGAACACCATCGACACATGCTGGCCCTTGGTGCA-GCAGTTGCCTCG
*
14585065 ACCACCATCG
65 AACACCATCG
14585075 ACAGAAGATG
Statistics
Matches: 175, Mismatches: 31, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
134 3 0.02
135 170 0.97
136 2 0.01
ACGTcount: A:0.19, C:0.32, G:0.28, T:0.21
Consensus pattern (134 bp):
TGGTACGGGCGGTTGCCTCGAACACCATCGACACATGCTGGCCCTTGGTGCAGCAGTTGCCTCGA
ACACCATCGGCACAAGCCGGCCCTTGGTGCAGGCGCTTACCTCAACCACCATCAACAGAAAATGG
CCCC
Found at i:14584981 original size:45 final size:45
Alignment explanation
Indices: 14584741--14585077 Score: 241
Period size: 45 Copynumber: 7.5 Consensus size: 45
14584731 GGTACGGGCA
* *
14584741 GTTGCCTCGACCACCATC-AGCACATGCTGAG-CCTTGGTGC-GAGCA
1 GTTGCCTCGAACACCATCGA-CACATGCTG-GCCCTTGGTGCAG-GCG
* * * * * *
14584786 GTTGCCTTGAACACCATCGGCACAAGCCGGCCCTTGGTGCGGGCT
1 GTTGCCTCGAACACCATCGACACATGCTGGCCCTTGGTGCAGGCG
* * * * * * * * *
14584831 CTTGCCTCGACCACCATCGACAGAAGATGGCCCCTGTTACGGGCG
1 GTTGCCTCGAACACCATCGACACATGCTGGCCCTTGGTGCAGGCG
* * *
14584876 GTTGCCTCGAACACCATCGACACATGCTGGCCCTTGGTGTAGCCA
1 GTTGCCTCGAACACCATCGACACATGCTGGCCCTTGGTGCAGGCG
* * *
14584921 GTTGCCTCGAACACCATCGGCACGTGCTGGGCCTTGGTGCAGGCG
1 GTTGCCTCGAACACCATCGACACATGCTGGCCCTTGGTGCAGGCG
* * * *** **
14584966 GTTACCTC-AACCACCATCAACAGAAAATGGCCCTTGGTGTGGGCG
1 GTTGCCTCGAA-CACCATCGACACATGCTGGCCCTTGGTGCAGGCG
* * * * * * * *
14585011 GTTGCCTTGAGCACTATCGGCATAAGCCGGCCCTTGGTGCAGGCT
1 GTTGCCTCGAACACCATCGACACATGCTGGCCCTTGGTGCAGGCG
* *
14585056 CTTGCCTCGACCACCATCGACA
1 GTTGCCTCGAACACCATCGACA
14585078 GAAGATGGCC
Statistics
Matches: 223, Mismatches: 64, Indels: 10
0.75 0.22 0.03
Matches are distributed among these distances:
44 3 0.01
45 218 0.98
46 2 0.01
ACGTcount: A:0.19, C:0.33, G:0.28, T:0.20
Consensus pattern (45 bp):
GTTGCCTCGAACACCATCGACACATGCTGGCCCTTGGTGCAGGCG
Found at i:14585079 original size:90 final size:90
Alignment explanation
Indices: 14584736--14585124 Score: 282
Period size: 90 Copynumber: 4.3 Consensus size: 90
14584726 GTTATGGTAC
* * * * * * *
14584736 GGGCAGTTGCCTCGACCACCATCAGCACATGCTGAG-CCTTGGTGC-GAGCAG-TTGCCTTGAAC
1 GGGCGGTTGCCTCGAACACCATCGGCACAAGCCG-GCCCTTGGTGCAG-GC-GCTTGCCTCGACC
* * ** *
14584798 ACCATCGGCACAAGCCGGCCCTTGGTGC
63 ACCATCGACAGAAGATGGCCCTTGGTGT
** * * * ** * * * * * *
14584826 GGGCTCTTGCCTCGACCACCATCGACAGAAGATGGCCCCTGTTACGGGCGGTTGCCTCGAACACC
1 GGGCGGTTGCCTCGAACACCATCGGCACAAGCCGGCCCTTGGTGCAGGCGCTTGCCTCGACCACC
* * *
14584891 ATCGACACATGCTGGCCCTTGGTGT
66 ATCGACAGAAGATGGCCCTTGGTGT
* * * ** * * * * *
14584916 AGCCAGTTGCCTCGAACACCATCGGCACGTGCTGGGCCTTGGTGCAGGCGGTTACCTCAACCACC
1 GGGCGGTTGCCTCGAACACCATCGGCACAAGCCGGCCCTTGGTGCAGGCGCTTGCCTCGACCACC
* *
14584981 ATCAACAGAAAATGGCCCTTGGTGT
66 ATCGACAGAAGATGGCCCTTGGTGT
* * * * *
14585006 GGGCGGTTGCCTTGAGCACTATCGGCATAAGCCGGCCCTTGGTGCAGGCTCTTGCCTCGACCACC
1 GGGCGGTTGCCTCGAACACCATCGGCACAAGCCGGCCCTTGGTGCAGGCGCTTGCCTCGACCACC
*
14585071 ATCGACAGAAGATGG-CCTCTGGTAT
66 ATCGACAGAAGATGGCCCT-TGGTGT
* *
14585096 GGGCGGTTGCTTCGAACAACATCGGCACA
1 GGGCGGTTGCCTCGAACACCATCGGCACA
14585125 TATCAGGCTT
Statistics
Matches: 233, Mismatches: 62, Indels: 8
0.77 0.20 0.03
Matches are distributed among these distances:
89 5 0.02
90 227 0.97
91 1 0.00
ACGTcount: A:0.20, C:0.32, G:0.29, T:0.20
Consensus pattern (90 bp):
GGGCGGTTGCCTCGAACACCATCGGCACAAGCCGGCCCTTGGTGCAGGCGCTTGCCTCGACCACC
ATCGACAGAAGATGGCCCTTGGTGT
Found at i:14585141 original size:45 final size:45
Alignment explanation
Indices: 14585084--14585189 Score: 133
Period size: 45 Copynumber: 2.3 Consensus size: 45
14585074 GACAGAAGAT
* * *
14585084 GGCCTCTGGTATGGGCGGTTGCTTCGAACAA-CATCGGCACATATCA
1 GGCCT-TGGTATGGGCGGTTGCCTC-AAAAACCATCGGCACATACCA
* *
14585130 GGCTTTGGTATGGGCGGTTGCCTCAAAAACCATCGGCACATGCCA
1 GGCCTTGGTATGGGCGGTTGCCTCAAAAACCATCGGCACATACCA
*
14585175 GGCCTTGGTGTGGGC
1 GGCCTTGGTATGGGC
14585190 ACATGCCTCA
Statistics
Matches: 52, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
44 4 0.08
45 44 0.85
46 4 0.08
ACGTcount: A:0.19, C:0.25, G:0.32, T:0.24
Consensus pattern (45 bp):
GGCCTTGGTATGGGCGGTTGCCTCAAAAACCATCGGCACATACCA
Found at i:14585197 original size:45 final size:45
Alignment explanation
Indices: 14585115--14585200 Score: 109
Period size: 45 Copynumber: 1.9 Consensus size: 45
14585105 CTTCGAACAA
* * ***
14585115 CATCGGCACATATCAGGCTTTGGTATGGGCGGTTGCCTCAAAAAC
1 CATCGGCACATACCAGGCCTTGGTATGGGCACATGCCTCAAAAAC
* *
14585160 CATCGGCACATGCCAGGCCTTGGTGTGGGCACATGCCTCAA
1 CATCGGCACATACCAGGCCTTGGTATGGGCACATGCCTCAA
14585201 TCTGGTGCGA
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
45 34 1.00
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (45 bp):
CATCGGCACATACCAGGCCTTGGTATGGGCACATGCCTCAAAAAC
Found at i:14587198 original size:26 final size:26
Alignment explanation
Indices: 14587154--14587206 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14587144 TTGGTCCAAT
14587154 CTTAGACTGGAAATAAACTCCGTATG
1 CTTAGACTGGAAATAAACTCCGTATG
* * *
14587180 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGAAATAAACTCCGTATG
14587206 C
1 C
14587207 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATAAACTCCGTATG
Found at i:14588567 original size:158 final size:164
Alignment explanation
Indices: 14588291--14588730 Score: 416
Period size: 171 Copynumber: 2.7 Consensus size: 164
14588281 TGCGCTACGT
* * * * * * * *
14588291 ATGCCTAAGTCAACCCATGAAATGAACGTGCGGGCGCTCAGCTGGTTGGAGAGCCAAAATGC-AC
1 ATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCGCTGAGCCGGTCGGAGAGGCATAATGCGA-
* * * * ** *
14588355 AAGCCGAGGATCGACCCGGCCCCCCTCTGCGTGCTGGCGATCCCATTGCGGGT-C-CTTCGA-TC
65 AAG-CGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATCCCGCTGCGGGTCCACTTAGACTC
*
14588417 CG-G-TT-G-GGGCTTAGA-TCAGGAATGAACTCCGC
129 CGAGATTCGTAGGCTTAGACT-AGGAATGAACTCCGC
* *
14588449 ATGCCTAAGTCAACCCATGAAACGAGCATGTGGGCGCTGAGCCGGTCGGAAAGGCATAATGCGAA
1 ATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCGCTGAGCCGGTCGGAGAGGCATAATGCGAA
*
14588514 AGTCGGGGATCGGCCCGGTCCCCCTTTGCGTGCTGTCGATCCCGCTGTC-GGTCCAATCTTAGAC
66 AG-CGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATCCCGCTG-CGGGTCC-A-CTTAGAC
** * * * *
14588578 TGGGAATGAACTTCGTATGCTTAGACTGGGAATGACCTCCGT
127 TCCG-A-G-A-TTCGTAGGCTTAGACTAGGAATGAACTCCGC
** *
14588620 ATGCCTAAGTCAACCCACAAAACGAG-AGTGCGGGCGCTGAGCCGGTCGGAGAGGCATAATGCGC
1 ATGCCTAAGTCAACCCATGAAACGAGCA-TGCGGGCGCTGAGCCGGTCGGAGAGGCATAATGCGA
* *
14588684 AAGCTGGGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGATCTCGCT
65 AAGC-GGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATCCCGCT
14588731 AACGGTCCCA
Statistics
Matches: 230, Mismatches: 34, Indels: 23
0.80 0.12 0.08
Matches are distributed among these distances:
158 95 0.41
159 3 0.01
162 5 0.02
163 2 0.01
166 1 0.00
169 2 0.01
170 3 0.01
171 118 0.51
172 1 0.00
ACGTcount: A:0.21, C:0.29, G:0.30, T:0.20
Consensus pattern (164 bp):
ATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCGCTGAGCCGGTCGGAGAGGCATAATGCGAA
AGCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATCCCGCTGCGGGTCCACTTAGACTCCG
AGATTCGTAGGCTTAGACTAGGAATGAACTCCGC
Found at i:14588607 original size:26 final size:26
Alignment explanation
Indices: 14588571--14588623 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14588561 TCGGTCCAAT
*
14588571 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14588597 CTTAGACTGGGAATGACCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14588623 C
1 C
14588624 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14588783 original size:171 final size:169
Alignment explanation
Indices: 14588420--14588896 Score: 457
Period size: 171 Copynumber: 2.8 Consensus size: 169
14588410 TTCGATCCGG
* *
14588420 TTGGGGCTTAGATCA-GGAATGAACTCCGCATGCCTAAGTCAACCCATGAAACGAGCA-TGTGGG
1 TTGGGGCTTAGA-CATGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAG-AGTGCGGG
* *
14588483 CGCTGAGCCGGTCGGAAAGGCATAATGCGAAAGTCGGGGATCGGCCCGGTCCCCCTTTGCGTGCT
64 CGCTGAGCCGGTCGGAGAGGCATAATGCGAAAGTCGGGGATCGGCCCGGTCCCCCTCTGCGTGCT
** * * * *
14588548 GTCGATCCCGCTGTCGGTCCAATCTTAGACTGGGAATGAAC
129 GTCGATCCCGCTAACGGTCCAATCTCAAACTCGGAACGAAC
** * **
14588589 TTCGTATGCTTAGAC-TGGGAATGACCTCCGTATGCCTAAGTCAACCCACAAAACGAGAGTGCGG
1 TT-G-GGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGAGTGCGG
* *
14588653 GCGCTGAGCCGGTCGGAGAGGCATAATGCGCAAG-CTGGGGATCGGCCCGATCCCCCTCTGCGTG
63 GCGCTGAGCCGGTCGGAGAGGCATAATGCGAAAGTC-GGGGATCGGCCCGGTCCCCCTCTGCGTG
* * **
14588717 CTGTCGATCTCGCTAACGGTCCCA-CTACCACAACCCTCGGTCCG-AC
127 CTGTCGATCCCGCTAACGGTCCAATCT--CA-AA--CTCGGAACGAAC
* * * ** * *
14588763 -TGGGGTTTAGACATGGAATGAACTCCGTATGCCAAAGCCAACCCATGAAATAAGCGTGCGGGCA
1 TTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGAGTGCGGGCG
* * * * * * * * * *
14588827 CTCAACCGATCCGAGAGGCAGAATGAGTAAGTCGGGGATCGACTCGGTCCCCC-CTGTGTGCTGT
66 CTGAGCCGGTCGGAGAGGCATAATGCGAAAGTCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGT
14588891 CGATCC
131 CGATCC
14588897 TGCTGCTTGT
Statistics
Matches: 250, Mismatches: 45, Indels: 25
0.78 0.14 0.08
Matches are distributed among these distances:
169 2 0.01
170 21 0.08
171 214 0.86
172 4 0.02
173 2 0.01
174 2 0.01
175 5 0.02
ACGTcount: A:0.23, C:0.28, G:0.29, T:0.20
Consensus pattern (169 bp):
TTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGAGTGCGGGCG
CTGAGCCGGTCGGAGAGGCATAATGCGAAAGTCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGT
CGATCCCGCTAACGGTCCAATCTCAAACTCGGAACGAAC
Found at i:14592640 original size:26 final size:26
Alignment explanation
Indices: 14592604--14592656 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14592594 CCGGTCTGAT
14592604 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
* *
14592630 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
14592656 C
1 C
14592657 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:14592935 original size:185 final size:185
Alignment explanation
Indices: 14592604--14592950 Score: 439
Period size: 185 Copynumber: 1.9 Consensus size: 185
14592594 CCGGTCTGAT
* * *
14592604 CTTAGACTGGGAATGAACTACGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACGACCTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * * * * * *
14592669 ACGAAATGAGCGTGCGAGTGCTAAGCCAGTCGAAGAGGCATAATGCGTAAGCCGAGGATCGGCCT
66 ACAAAACGAGCGTGCGAGCGCTAAGCCAGCCGAAGAGGCAGAATACGCAAGCCGAGGATCAGCCC
* * *
14592734 GGTCCCCCTGTGCGTGCTGTCGATCCCACTGCCACAAGCCTCGGTCTGGCTCGGG
131 GATCCCACTCTGCGTGCTGTCGATCCCACTGCCACAAGCCTCGGTCTGGCTCGGG
*
14592789 CTTAGACTGGGAATGAACGACACT-TGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACC
1 CTTAGACTGGGAATGAACGAC-CTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * * * *
14592853 CACAAAACGAGCGTGCGGGCGTTCAGTCGGCC-AGAGAGGCAGAATATGCAAGTCG-GGTATCAG
65 CACAAAACGAGCGTGCGAGCGCTAAGCCAGCCGA-AGAGGCAGAATACGCAAGCCGAGG-ATCAG
14592916 CCCGATCCCACTCTGCGTGCTGTCGATCCCACTGC
128 CCCGATCCCACTCTGCGTGCTGTCGATCCCACTGC
14592951 AGGTCCTGCT
Statistics
Matches: 136, Mismatches: 23, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
184 3 0.02
185 132 0.97
186 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.29, T:0.20
Consensus pattern (185 bp):
CTTAGACTGGGAATGAACGACCTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
ACAAAACGAGCGTGCGAGCGCTAAGCCAGCCGAAGAGGCAGAATACGCAAGCCGAGGATCAGCCC
GATCCCACTCTGCGTGCTGTCGATCCCACTGCCACAAGCCTCGGTCTGGCTCGGG
Found at i:14593873 original size:26 final size:26
Alignment explanation
Indices: 14593833--14593885 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14593823 TCGGTGTGAT
*
14593833 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
14593859 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
14593885 C
1 C
14593886 CTAAGTGAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:14594390 original size:171 final size:167
Alignment explanation
Indices: 14593859--14594421 Score: 511
Period size: 171 Copynumber: 3.3 Consensus size: 167
14593849 ACTCCGTATG
* * * * *
14593859 CTTAGACTGGCAATGAACTCCGTATGCCTAAGTGAACCCACGAAACGAGCGTACGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAAC
* * *
14593924 CAATCAGAGAGGCATAATGTGTAAGCCGAGGATCAGCTCGGTCCCCCTTTGCGTGCTGTCAATCT
66 CGATCAGAGAGGCAGAATGTGCAAGCCGAGGATCAGCTCGGT-CCCCTTTGCGTGCTGTCAATCT
* * * ** * * *
14593989 CGCTATCGA-TCCCGTTGCCACAACCCTCGGTTTGGCTCGGG
130 CGCT-GCGAGTCCTG-TACTGCAACCCTCGATCTGGCT--GT
* * * *
14594030 CTTAGACAT-GGAATAAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGTGCTCAA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAA
* * * * * * * *
14594094 TCGATCGGAGAGGCAGAATGCGCAAGTCGGGGATCAGCTCGATCCCCTTTGCGTGCCGTCGATC-
65 CCGATCAGAGAGGCAGAATGTGCAAGCCGAGGATCAGCTCGGTCCCCTTTGCGTGCTGTCAATCT
* * * * *
14594158 CTACTGCTG-GT-CT-TACTAGGAA---T-GAACAAGACT-T
130 C-GCTGC-GAGTCCTGTACT-GCAACCCTCGATC-TGGCTGT
* * * *
14594192 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATTAAACGAGCGTGCGGGCGATCAA
1 -CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAA
* * * *
14594257 CCGGA-CAGAGAGGCAGAATGTGCAAGCCGAGGATCGGCCCGGTCACCCTCTGCATGCTGTCAAT
65 CC-GATCAGAGAGGCAGAATGTGCAAGCCGAGGATCAGCTCGGTC-CCCTTTGCGTGCTGTCAAT
14594321 CTCGCTGCGAGTCCTGCTACTGCAACCCTCGATCTGGTCTGAT
128 CTCGCTGCGAGTCCTG-TACTGCAACCCTCGATCTGG-CTG-T
* *
14594364 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCGGACGGGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGC
14594422 ATTATGCCAG
Statistics
Matches: 308, Mismatches: 62, Indels: 44
0.74 0.15 0.11
Matches are distributed among these distances:
162 1 0.00
163 88 0.29
164 25 0.08
165 7 0.02
166 3 0.01
167 6 0.02
168 2 0.01
169 5 0.02
170 28 0.09
171 141 0.46
172 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.21
Consensus pattern (167 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAAC
CGATCAGAGAGGCAGAATGTGCAAGCCGAGGATCAGCTCGGTCCCCTTTGCGTGCTGTCAATCTC
GCTGCGAGTCCTGTACTGCAACCCTCGATCTGGCTGT
Found at i:14595722 original size:197 final size:196
Alignment explanation
Indices: 14595419--14595968 Score: 710
Period size: 197 Copynumber: 2.8 Consensus size: 196
14595409 ATGCCTATTC
** * * * * *
14595419 CAACCCAGGAAACGAGCGTGTGGGCGCTCAACCGGCTAGAGAAGCAGAATGCACAAGTCAGGGAT
1 CAACCCACAAAACGAGTGTGTGGGCGCTCAGCCGGCCAGAGAGGCAGAATGCGCAAGTCAGGGAT
* * *
14595484 CGACCTGATCCCCCCCTGTGTGCTGTCGATCCTGTTGCTGGACCTATTGTCGCAACCCTCGGTCC
66 CGACCCGAT-CCCCCCTGCGTGCTGTCGATCCTGCTGCTGGACCTATTGTCGCAACCCTCGGTCC
* *
14595549 AGTCCGATCTTAGACTGGGAATGAATGAGACTTGCTTAGACTAGGGATGAACTCCGTATGCCTAA
130 AGTCTGATCTTAGACTGGGAATGAACGAGACTTGCTTAGACTAGGGATGAACTCCGTATGCCTAA
14595614 GT
195 GT
** *
14595616 CAACCCACAAAACGAGTGTGTGGGCATTCAGCCGGCCAGAGAGGCAGAATGCGTAAGTCAGGGAT
1 CAACCCACAAAACGAGTGTGTGGGCGCTCAGCCGGCCAGAGAGGCAGAATGCGCAAGTCAGGGAT
* * * *
14595681 CGACCCGATCCCCTCCTGCGTGCTGTCGATCCTGCTGCTGGACCTGTTGTTGTAACCTTCGGTCC
66 CGACCCGATCCCC-CCTGCGTGCTGTCGATCCTGCTGCTGGACCTATTGTCGCAACCCTCGGTCC
*
14595746 AATCTGATCTTAGACTGGGAATGAACGAGACTTGCTTAGACTAGGGATGAACTCCGTATGCCTAA
130 AGTCTGATCTTAGACTGGGAATGAACGAGACTTGCTTAGACTAGGGATGAACTCCGTATGCCTAA
14595811 GT
195 GT
* * * * *
14595813 CAACCCATAAAACGAGTGTGCGGGCGCTCAGTCGGCCAGAGAGGCAGAATGTGCAAG-CCGAGGA
1 CAACCCACAAAACGAGTGTGTGGGCGCTCAGCCGGCCAGAGAGGCAGAATGCGCAAGTCAG-GGA
* * * * * * ** *
14595877 TCGGCCCGGTCCCCCTCTGCGTGCTGTCAATCCCGCTGC-GGGCCTTACTACCGCAACCCTCGAT
65 TCGACCCGATCCCCC-CTGCGTGCTGTCGATCCTGCTGCTGGACC-TATTGTCGCAACCCTCGGT
*
14595941 CC-GATCTGGTCTTAGACTGGGAATGAAC
128 CCAG-TCTGATCTTAGACTGGGAATGAAC
14595969 TTTGTATGCC
Statistics
Matches: 305, Mismatches: 43, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
196 11 0.04
197 294 0.96
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (196 bp):
CAACCCACAAAACGAGTGTGTGGGCGCTCAGCCGGCCAGAGAGGCAGAATGCGCAAGTCAGGGAT
CGACCCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCTGGACCTATTGTCGCAACCCTCGGTCCA
GTCTGATCTTAGACTGGGAATGAACGAGACTTGCTTAGACTAGGGATGAACTCCGTATGCCTAAG
T
Found at i:14600413 original size:171 final size:170
Alignment explanation
Indices: 14600114--14600473 Score: 373
Period size: 171 Copynumber: 2.1 Consensus size: 170
14600104 CCGGTCCGAT
* * * * *
14600114 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTACGAAACGAGCGTGCGGGCGCTGAGC
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAAC
* * * * * ** * * *
14600179 CAGTCAGAGAGGCATAATGCGTAAGCCAGGGATTGGCCCGGTCCCCCTCTGCGTGCTGTCGATCC
65 CAGTCAGAGAGGCAGAATACGCAAGCCAGAGATCGGCCCAATCCCCCCCTGCATGCGGTCGATCC
*
14600244 CGCTGCCGGTCCAACTACCACAACCCTCGATCCGA-CTGGGG
130 CGCTGCCGGTCCAACTACCACAACCCTCGATCCGATCT-GAG
* * *
14600285 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGAGTGCTCAAT
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAAC
* * ** *
14600350 CTGTCGGAGAGGCAGAATACGCAAG-TTGAAGATCGGCCCAATCCCCCCCTGTATGCGGTCGATC
65 CAGTCAGAGAGGCAGAATACGCAAGCCAG-AGATCGGCCCAATCCCCCCCTGCATGCGGTCGATC
* * ** ** * *
14600414 CTGCTGCTGGTCCTGCTGTCGCAACCCTCGATCCGATCTGAT
129 CCGCTGCCGGTCCAACTACCACAACCCTCGATCCGATCTGAG
14600456 CTTAGACTTGGAATGAAC
1 CTTAGAC-TGGAATGAAC
14600474 GAGACTTTCT
Statistics
Matches: 153, Mismatches: 33, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
170 1 0.01
171 149 0.97
172 3 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (170 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAACC
AGTCAGAGAGGCAGAATACGCAAGCCAGAGATCGGCCCAATCCCCCCCTGCATGCGGTCGATCCC
GCTGCCGGTCCAACTACCACAACCCTCGATCCGATCTGAG
Found at i:14601507 original size:26 final size:26
Alignment explanation
Indices: 14601478--14601530 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14601468 TCAGTCCGAT
14601478 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14601504 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14601530 C
1 C
14601531 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14601676 original size:690 final size:693
Alignment explanation
Indices: 14600114--14602000 Score: 2149
Period size: 700 Copynumber: 2.7 Consensus size: 693
14600104 CCGGTCCGAT
* * *
14600114 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTACGAAACGAGCGTGCGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCTTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGC
* * * *
14600179 CAGTCAGAGAGGCATAATGCGTAAGCC-AGGGATTGGCCCGGTCCCCCTCTGCGTGCTGTCGATC
66 CGGTCAGAGAGGCATAATGCGTAAACCGA-GGATTGGCCCGATCCCCCTCTACGTGCTGTCGATC
* * *
14600243 CCGCTGCCGGTCCAACTACCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCGT
130 CCGCTGTCGGTCCAGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGT
* * *
14600308 ATGCCTAAGCCAACCCACGAAATGAGCGTGCGAGTGCTCAATCT-GTCGGAGAGGCAGAATACGC
195 ATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAA-CTGGTCGGAAAGGAAGAATACGC
* * * * * * *
14600372 AAGTTGAAGATCGGCCCAATCCCCCCCTGTATGCGGTCGATCCTGCTGCTGGTCCTGCTGTCGCA
259 AAGTCG-GGATCAGCCCGAT-CCCCCCTGCATGCTGTCGATCCT-CTGCTGGTCCTGCTAT-GCA
* * * *
14600437 ACCCTCGATCCGATCTGATCTTAGACTTGGAATGAACGAGACTTTCTTAGACTGGGGATGAACTT
320 ACCTTCGGTCCGATCTGATCTTAGAC-TGGAATGAACGAGACTTGCTTAGACTGGGGATGAACTC
* * *
14600502 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC-GCTCAGTCGACCAGAGAGGTAGAATG
384 CGTATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCTGCTCAGCCGGCCAGAGAGGTAGAATG
*
14600566 TGCAAGCCGAGGATC-AGCCCGATCCCCCTCTGCGTGCTACCGATCCCGCTGCGGGTCCCTCGGT
449 TGTAAGCCGAGGATCGA-CCCGATCCCCCTCTGCGTGCTACCGATCCCGCTGCGGGTCCCT--GT
* * * * * * *
14600630 CCGGTTAGGGCTTAGACCAAGAATGAACTTCGCATGTCTTAGTCAATCCACGAAATGAGCGTACG
511 -CGGTTAGGGCTAAGACCAAGAATGAACTACGCATGCCTAAATCAATCCACGAAACGAACGTACG
* * * *
14600695 GGCGCTCAGCCAACCGGAGAGGCAGGATGCGCAAGTCGAGGATCGACCCAATACCCCTCTACGTG
575 GGCGCTCAGCCAACCGAAAAGCCAGAATGCGCAAGTCGAGGATCGACCCAATACCCCTCTACGTG
* ** * *
14600760 CTGTTGTCGATCCTATTGTCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
640 CTGCTACCGATCCCACTGTCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
14600814 CTTAGACTGGGAATGAACT-CTGTACGCCTAAGTCAACCCATGAAACGAGCGTACGGGTGCTGAG
1 CTTAGACTGGGAATGAACTCCT-TATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAG
* * * * * * * *
14600878 CCGGTCAGAGAGGCATAATGCGCAAGCCGGGGATCGACCCCATCCCCCTCTAAGTGCTATCGATC
65 CCGGTCAGAGAGGCATAATGCGTAAACCGAGGATTGGCCCGATCCCCCTCTACGTGCTGTCGATC
* * *
14600943 CCGCTGTCGGTCCAGCTACCACAATCATCGGTTCGACTGGGGCTTAGACATGGAATGAACTCCGT
130 CCGCTGTCGGTCCAGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGT
* * *
14601008 ATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAACTGGCCGGAAAGGTAGAATACGCA
195 ATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAACTGGTCGGAAAGGAAGAATACGCA
* * * * *
14601073 AATCGGGATCAGCTCGATCCCCCCTGCATACTGCCGATCCTACTGTTGGTCCTGCTACTGCAACC
260 AGTCGGGATCAGCCCGATCCCCCCTGCATGCTGTCGATCCT-CTGCTGGTCCTGCTA-TGCAACC
* * *
14601138 TTCGGTCTGATCTGATCTTAGACTGAGAATGAACAAGACTTGCTTAGACTGGGGATGAACTCCAT
323 TTCGGTCCGATCTGATCTTAGACTG-GAATGAACGAGACTTGCTTAGACTGGGGATGAACTCCGT
* * *
14601203 ATGCCTAAGTCGACCCATGAAACGAGCGCGCGGGCTGACTCAGCCGGCCAGAGAGGTAGAATGTG
387 ATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCTG-CTCAGCCGGCCAGAGAGGTAGAATGTG
* * * * * * *
14601268 TAAGTCGGGGATCGACCC-AGTCCTCCTCTGTGTGCTGCCGATCCCTCT-CTGG-CCCT-T-GGT
451 TAAGCCGAGGATCGACCCGA-TCCCCCTCTGCGTGCTACCGATCCCGCTGCGGGTCCCTGTCGGT
* * * * * * *
14601328 T-GGTC-AAGACCGAGAATGCACTACGTATGCCTAAATCAA-CACATGAAACGAACGTGCGGGCT
515 TAGGGCTAAGACCAAGAATGAACTACGCATGCCTAAATCAATC-CACGAAACGAACGTACGGGCG
* * * *** * *
14601390 CTCAGTCGATCGAAAAGCCAGAATGCGCAAGTCGAGGATCGACTTGAT-CCCTTCTGCGTGCTGC
579 CTCAGCCAACCGAAAAGCCAGAATGCGCAAGTCGAGGATCGACCCAATACCCCTCTACGTGCTGC
*
14601454 TACCGATCCCGCTGTC-AGTCCGATCTTAGACTGGGAATGAACTCCGTATG
644 TACCGATCCCACTGTCGA-TCCGATCTTAGACTGGGAATGAACTCCGTATG
* ** * * * * *
14601504 CTTAGACTGGGAATGAACTCCTTATGCCTAAGTCAACCCATTAAATAAGTGTGCAGGCACAGTGC
1 CTTAGACTGGGAATGAACTCCTTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGC
* * * *
14601569 CGGTCGGAGAGGCATAATACGTAAATCGAGGATTGGCTCGATCCCCCTCTACGTGCTGTCGATCC
66 CGGTCAGAGAGGCATAATGCGTAAACCGAGGATTGGCCCGATCCCCCTCTACGTGCTGTCGATCC
* * * *
14601634 CGCTGTCGATCTC-GCTGCCACAACCCTCGGTCCGATTGGGGCTTAGACATGGAATGAACTCCTT
131 CGCTGTCGGTC-CAGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGT
** * ** * * * *
14601698 ATGCCTAAGCCAACCCACGAAACAAGCGTGTGGGCACTCAA-TCGATCGAAAAGGAAGAATGCAC
195 ATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAACT-GGTCGGAAAGGAAGAATACGC
* * * *
14601762 AAGTCGGGGATCAACCCGGTCCCCCCTGCGTGCTGTCGAT-C-CTGCT-G-CC-G-TA---ACCC
259 AAGTC-GGGATCAGCCCGATCCCCCCTGCATGCTGTCGATCCTCTGCTGGTCCTGCTATGCAACC
* *
14601818 TT-GGTCCGGTCCGATCTTAGACTGGGAATGAACGAGACTTGCTTAGACTGGGGATGAACTCCGT
323 TTCGGTCCGATCTGATCTTAGACT-GGAATGAACGAGACTTGCTTAGACTGGGGATGAACTCCGT
* * *
14601882 ATGCCTAAGTCAACCCAAGAAACGAGCGTGAGGG-TGCTCAACCGGCCAGAGAGGTAGAATCTGT
387 ATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCTGCTCAGCCGGCCAGAGAGGTAGAATGTGT
* * * * *
14601946 AAGCCGTGGATCGACCCGAT-CCCCTTTCACGTGCTATCGATCCCGTTGCGGGTCC
452 AAGCCGAGGATCGACCCGATCCCCCTCT-GCGTGCTACCGATCCCGCTGCGGGTCC
14602001 TGCTGCTACA
Statistics
Matches: 1002, Mismatches: 165, Indels: 61
0.82 0.13 0.05
Matches are distributed among these distances:
676 5 0.00
677 55 0.05
678 6 0.01
679 87 0.09
680 6 0.01
684 2 0.00
685 1 0.00
686 2 0.00
687 1 0.00
688 4 0.00
689 2 0.00
690 271 0.27
691 111 0.11
692 3 0.00
693 4 0.00
695 1 0.00
697 2 0.00
698 129 0.13
699 18 0.02
700 291 0.29
701 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (693 bp):
CTTAGACTGGGAATGAACTCCTTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGC
CGGTCAGAGAGGCATAATGCGTAAACCGAGGATTGGCCCGATCCCCCTCTACGTGCTGTCGATCC
CGCTGTCGGTCCAGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTA
TGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAACTGGTCGGAAAGGAAGAATACGCAA
GTCGGGATCAGCCCGATCCCCCCTGCATGCTGTCGATCCTCTGCTGGTCCTGCTATGCAACCTTC
GGTCCGATCTGATCTTAGACTGGAATGAACGAGACTTGCTTAGACTGGGGATGAACTCCGTATGC
CTAAGTCAACCCAAGAAACGAGCGTGCGGGCTGCTCAGCCGGCCAGAGAGGTAGAATGTGTAAGC
CGAGGATCGACCCGATCCCCCTCTGCGTGCTACCGATCCCGCTGCGGGTCCCTGTCGGTTAGGGC
TAAGACCAAGAATGAACTACGCATGCCTAAATCAATCCACGAAACGAACGTACGGGCGCTCAGCC
AACCGAAAAGCCAGAATGCGCAAGTCGAGGATCGACCCAATACCCCTCTACGTGCTGCTACCGAT
CCCACTGTCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:14602915 original size:26 final size:26
Alignment explanation
Indices: 14602886--14602938 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14602876 CCGGTCCGAT
14602886 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14602912 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14602938 C
1 C
14602939 CTAAGTAAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14606051 original size:12 final size:12
Alignment explanation
Indices: 14606036--14606068 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
14606026 ATGCTGCTGA
*
14606036 TCCTGCTACTGG
1 TCCTGCTACCGG
14606048 TCCTGCTACCGG
1 TCCTGCTACCGG
14606060 TCCTGCTAC
1 TCCTGCTAC
14606069 GCAACCCTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.09, C:0.39, G:0.21, T:0.30
Consensus pattern (12 bp):
TCCTGCTACCGG
Found at i:14608871 original size:145 final size:145
Alignment explanation
Indices: 14608602--14608876 Score: 351
Period size: 145 Copynumber: 1.9 Consensus size: 145
14608592 CGAGACTTGT
* *
14608602 TTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCAGACGGGCGCTCAGCC
1 TTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCAGACGGGCACTCAGCC
* * * *
14608667 GGCCAGAGAGGTAGAATGTGCAAGTCGAGAATCGGCTCGATCCCCCTCTACATGTTACCGATCCC
66 GGCCAGAGAGGCAGAATGCGCAAGTCGAGAATCGGCTCCATCCCCCTCTACATGCTACCGATCCC
14608732 ACTGTCGGTCCGTTC
131 ACTGTCGGTCCGTTC
* * * *
14608747 TTAGACTGGGAATGAAC-TCTGTATGCCTAAGTCAACCCACGGAATGAGC-GTTCGGGCACTGAG
1 TTAGACTGGGAATGAACTTC-GTATGCCTAAGTCAACCCACGAAACGAGCAG-ACGGGCACTCAG
* * * * *
14608810 CCGGTCGGAGAGGCATAATGCGCAAG-CTGAGGATCGGC-CCATTCCCCCTCTGCATGCTACCGA
64 CCGGCCAGAGAGGCAGAATGCGCAAGTC-GAGAATCGGCTCCA-TCCCCCTCTACATGCTACCGA
14608873 TCCC
127 TCCC
14608877 GCTGCCAGTC
Statistics
Matches: 111, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
144 6 0.05
145 105 0.95
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (145 bp):
TTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCAGACGGGCACTCAGCC
GGCCAGAGAGGCAGAATGCGCAAGTCGAGAATCGGCTCCATCCCCCTCTACATGCTACCGATCCC
ACTGTCGGTCCGTTC
Found at i:14609287 original size:197 final size:197
Alignment explanation
Indices: 14608929--14609302 Score: 439
Period size: 197 Copynumber: 1.9 Consensus size: 197
14608919 TAGACATGGA
* * * * *
14608929 ATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCAGGCACTCAACCAGTCGGAAAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCACTCAACCAGCCAGAAAGG
* * * ** * *
14608994 CAGAATGCGCAAGTCAAGGATTGGTCCGATCCTCCACTGTGTGCTGTCGATCCTGCTACTGGTCC
66 CAGAATGCGCAAGCCAAGGATCGGTCCGATCCCCCACTGCATGCTGTCGATCCTACTACGGGTCC
** ** * * *
14609059 TGCTGTCGCAACTTTTGATCTGGTTTGATCTTAGACTGGGAATGAACGAGACTTGCTTACACTAG
131 TGCTACCGCAACCCTCGATCTGATCTGATCTTAGACTGGGAATGAACGAGACTTGCTTACACTAG
14609124 GG
196 GG
* * * *
14609126 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACTA-GCGCTCAACCGGCCAGAGAG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTAC-AGGCACTCAACCAGCCAGAAAG
* * ** * *
14609190 GTAGAATGTGCAAGCCGGGGATCGG-CTCGGTCCCCCTCTGCATGCTGTCGAT-CTCACTACGGG
65 GCAGAATGCGCAAGCCAAGGATCGGTC-CGATCCCCCACTGCATGCTGTCGATCCT-ACTACGGG
14609253 TCCTGCTACCGCAACCCTCGATCTGATCTGATCTTAGACTGGGAATGAAC
128 TCCTGCTACCGCAACCCTCGATCTGATCTGATCTTAGACTGGGAATGAAC
14609303 TCCGTATGCC
Statistics
Matches: 145, Mismatches: 29, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
196 3 0.02
197 141 0.97
198 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.23
Consensus pattern (197 bp):
ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCACTCAACCAGCCAGAAAGG
CAGAATGCGCAAGCCAAGGATCGGTCCGATCCCCCACTGCATGCTGTCGATCCTACTACGGGTCC
TGCTACCGCAACCCTCGATCTGATCTGATCTTAGACTGGGAATGAACGAGACTTGCTTACACTAG
GG
Found at i:14610629 original size:184 final size:190
Alignment explanation
Indices: 14610325--14610743 Score: 481
Period size: 184 Copynumber: 2.2 Consensus size: 190
14610315 TTAGACATGG
* * * * * *
14610325 AATGAATTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTGTGGGCACTGAACCGAACGGAAAG
1 AATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTCAACCGAACAGAAAG
* ** *
14610390 GCAGAATGCATAAGTCAAGGATCGACTTGGTCCCCCCTGCGTGCTGCCGATCCTG-CT-G-T-C-
66 GCAGAATGCATAAGTCAAGGATCAACCCGGTCCCCCCTGCGTGCTGCCAATCCTGACTGGCTGCT
* *
14610450 G-CAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACAAGACTTGCTTAGACTGGG
131 GACAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACAAGACTTGCTTACACTGGA
* * ** * *
14610509 GATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGTGTGCGGGTGCTCAACCGACCAGAGAG
1 AATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTCAACCGAACAGAAAG
* * * *
14610574 GCAGAATGCATAGGTCGAGGATCAACCCGGTCCCTCCTGTGTGCTGCCAATCCTGCTACTGGTCC
66 GCAGAATGCATAAGTCAAGGATCAACCCGGTCCCCCCTGCGTGCTGCCAATCCTG--ACTGG--C
* * * **
14610639 TGCTGTCACAACCCTTGGTCTGATCCGATCTTAGACTGGGGATGAATGAGACTTGCTTACACTGG
127 TGCTG--ACAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACAAGACTTGCTTACACTGG
14610704 A
190 A
* *
14610705 AATGAACTCCGTATGCCTAAGTTAACCCACAAAATGAGC
1 AATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGC
14610744 ATGCAGGCGC
Statistics
Matches: 192, Mismatches: 31, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
184 100 0.52
187 2 0.01
188 1 0.01
191 1 0.01
192 1 0.01
193 1 0.01
196 86 0.45
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.22
Consensus pattern (190 bp):
AATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTCAACCGAACAGAAAG
GCAGAATGCATAAGTCAAGGATCAACCCGGTCCCCCCTGCGTGCTGCCAATCCTGACTGGCTGCT
GACAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACAAGACTTGCTTACACTGGA
Found at i:14611620 original size:90 final size:90
Alignment explanation
Indices: 14611487--14612033 Score: 428
Period size: 90 Copynumber: 6.1 Consensus size: 90
14611477 GGCACATGCA
* * * * * *
14611487 TCGACCATCATCGGCACAGGCT-GCCCTTTGGTACGGGCAGTTGCCTC-AACCACCATCGGCACA
1 TCGACCACCATCGGCAGAAGATGGCCC-TTGGTGCGGGCGGTTGCCTCGAA-CACCATCGGCACA
**
14611550 AGCTAGGCCCTGGTGCGAACGGTTGCC
64 AGCTAGGCCCTGGTGCGGGCGGTTGCC
* * * * * * *
14611577 TCGATCACCATCGGCACAAGATGGCCCCTGGTGCAGGCGGTTGCATCGAACACCATCGACACATG
1 TCGACCACCATCGGCAGAAGATGGCCCTTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAG
* * *
14611642 CTAAGCCGTAGTGCGGGCGGTTGCC
66 CTAGGCCCTGGTGCGGGCGGTTGCC
* * ** *
14611667 TCGACCACCATC-GCACATGCCGAG-CCTTGGTGCGGGCGGTTGTCTCGAACACCATCGGCACAA
1 TCGACCACCATCGGCAGAAGATG-GCCCTTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAA
** ** *
14611730 G-TCA-GCCCTTGGTATGGGCTCTTACC
65 GCT-AGGCCC-TGGTGCGGGCGGTTGCC
* * * *
14611756 TCGACCACCATCGGCAGAAGATGGCCAC-TGGTGTGGGCGGTTACCTCGAACACTATTGGCACAT
1 TCGACCACCATCGGCAGAAGATGGCC-CTTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACA-
* * *
14611820 A-CTGGGCCTTAGTGCGGGCGGTTGCC
64 AGCTAGGCCCTGGTGCGGGCGGTTGCC
* * * * * * *
14611846 TCAATCACCATCGGCAGAAGATGGCCCTTGGTGTGGGTGGTTACCTCGAGCACCATCGACACAAG
1 TCGACCACCATCGGCAGAAGATGGCCCTTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAG
* * * **
14611911 C-CGACCCTTGGTACGGGCTCTTGCC
66 CTAGGCCC-TGGTGCGGGCGGTTGCC
* * * * * *
14611936 TCGACCACCATCGACAGAAGATGGCCCTTGGTGCGGGTGGTTACGTCGAACACCATCGACACATG
1 TCGACCACCATCGGCAGAAGATGGCCCTTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAG
** * * * *
14612001 CCGGGCCTTGGTGCGAGCAGTTGCA
66 CTAGGCCCTGGTGCGGGCGGTTGCC
14612026 TCGACCAC
1 TCGACCAC
14612034 TATTGGCACG
Statistics
Matches: 363, Mismatches: 79, Indels: 30
0.77 0.17 0.06
Matches are distributed among these distances:
88 4 0.01
89 71 0.20
90 273 0.75
91 15 0.04
ACGTcount: A:0.20, C:0.31, G:0.29, T:0.20
Consensus pattern (90 bp):
TCGACCACCATCGGCAGAAGATGGCCCTTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAG
CTAGGCCCTGGTGCGGGCGGTTGCC
Found at i:14611919 original size:45 final size:45
Alignment explanation
Indices: 14611537--14612015 Score: 256
Period size: 45 Copynumber: 10.7 Consensus size: 45
14611527 TTGCCTCAAC
* *** * *
14611537 CACCATCGGCACAAGCTAGGCCC-TGGTGCGAACGGTTGCCTCGAT
1 CACCATCGGCACAAGC-CGGCCCTTGGTGCGGGTGGTTACCTCGAA
** * * * * *
14611582 CACCATCGGCACAAGATGGCCCCTGGTGCAGGCGGTTGCATCGAA
1 CACCATCGGCACAAGCCGGCCCTTGGTGCGGGTGGTTACCTCGAA
* * ** * * * * *
14611627 CACCATCGACACATGCTAAG-CCGTAGTGCGGGCGGTTGCCTCGAC
1 CACCATCGGCACAAGC-CGGCCCTTGGTGCGGGTGGTTACCTCGAA
* * **
14611672 CACCATC-GCACATGCCGAG-CCTTGGTGCGGGCGGTTGTCTCGAA
1 CACCATCGGCACAAGCCG-GCCCTTGGTGCGGGTGGTTACCTCGAA
* * ** * *
14611716 CACCATCGGCACAAGTCAGCCCTTGGTATGGGCT-CTTACCTCGAC
1 CACCATCGGCACAAGCCGGCCCTTGGTGCGGG-TGGTTACCTCGAA
* ** * *
14611761 CACCATCGGCAGAAGATGGCCAC-TGGTGTGGGCGGTTACCTCGAA
1 CACCATCGGCACAAGCCGGCC-CTTGGTGCGGGTGGTTACCTCGAA
* * * * * * *
14611806 CACTATTGGCACATA-CTGGGCCTTAGTGCGGGCGGTTGCCTC-AA
1 CACCATCGGCACA-AGCCGGCCCTTGGTGCGGGTGGTTACCTCGAA
* ** * *
14611850 TCACCATCGGCAGAAGATGGCCCTTGGTGTGGGTGGTTACCTCGAG
1 -CACCATCGGCACAAGCCGGCCCTTGGTGCGGGTGGTTACCTCGAA
* * * * * *
14611896 CACCATCGACACAAGCCGACCCTTGGTACGGGCT-CTTGCCTCGAC
1 CACCATCGGCACAAGCCGGCCCTTGGTGCGGG-TGGTTACCTCGAA
* * ** *
14611941 CACCATCGACAGAAGATGGCCCTTGGTGCGGGTGGTTACGTCGAA
1 CACCATCGGCACAAGCCGGCCCTTGGTGCGGGTGGTTACCTCGAA
* * *
14611986 CACCATCGACACATGCCGGGCCTTGGTGCG
1 CACCATCGGCACAAGCCGGCCCTTGGTGCG
14612016 AGCAGTTGCA
Statistics
Matches: 335, Mismatches: 84, Indels: 30
0.75 0.19 0.07
Matches are distributed among these distances:
44 47 0.14
45 283 0.84
46 5 0.01
ACGTcount: A:0.20, C:0.31, G:0.30, T:0.20
Consensus pattern (45 bp):
CACCATCGGCACAAGCCGGCCCTTGGTGCGGGTGGTTACCTCGAA
Found at i:14611970 original size:135 final size:135
Alignment explanation
Indices: 14611495--14611977 Score: 381
Period size: 135 Copynumber: 3.6 Consensus size: 135
14611485 CATCGACCAT
* * * * * *
14611495 CATCGGCACAGGCTG-CCCTTTGGTACGGGCAGTTGCCTCAACCACCATCGGCACAAGCTAGGCC
1 CATCGACACAAGCTGACCC-TTGGTACGGGCGGTTGCCTCGACCACCATCGACACAAGAT-GGCC
** * * ** * * *
14611559 C-TGGTGCGAACGGTTGCCTCGATCACCATCGGCACAAGATGGCCCCTGGTGCAGGCGGTTGCAT
64 CTTGGTGCGGGCGGTTGCCTCAATCACCATCGGCACAAGATGGCCCTTGGTGTGGGTGGTTACCT
14611623 CGAACAC
129 CGAACAC
* * * * * * * **
14611630 CATCGACACATGCTAAGCCGTAGTGCGGGCGGTTGCCTCGACCACCATCG-CACATGCCGAG-CC
1 CATCGACACAAGCTGACCCTTGGTACGGGCGGTTGCCTCGACCACCATCGACACAAGATG-GCCC
* * * *
14611693 TTGGTGCGGGCGGTTGTCTCGAA-CACCATCGGCACAAG-TCAGCCCTTGGTATGGGCT-CTTAC
65 TTGGTGCGGGCGGTTGCCTC-AATCACCATCGGCACAAGAT-GGCCCTTGGTGTGGG-TGGTTAC
*
14611755 CTCGACCAC
127 CTCGAACAC
* * * * ** * * * * * * *
14611764 CATCGGCAGAAGATGGCCAC-TGGTGTGGGCGGTTACCTCGAACACTATTGGCACATA-CTGGGC
1 CATCGACACAAGCTGACC-CTTGGTACGGGCGGTTGCCTCGACCACCATCGACACA-AGATGGCC
* *
14611827 CTTAGTGCGGGCGGTTGCCTCAATCACCATCGGCAGAAGATGGCCCTTGGTGTGGGTGGTTACCT
64 CTTGGTGCGGGCGGTTGCCTCAATCACCATCGGCACAAGATGGCCCTTGGTGTGGGTGGTTACCT
*
14611892 CGAGCAC
129 CGAACAC
* ** *
14611899 CATCGACACAAGCCGACCCTTGGTACGGGCTCTTGCCTCGACCACCATCGACAGAAGATGGCCCT
1 CATCGACACAAGCTGACCCTTGGTACGGGCGGTTGCCTCGACCACCATCGACACAAGATGGCCCT
*
14611964 TGGTGCGGGTGGTT
66 TGGTGCGGGCGGTT
14611978 ACGTCGAACA
Statistics
Matches: 267, Mismatches: 66, Indels: 30
0.74 0.18 0.08
Matches are distributed among these distances:
133 4 0.01
134 99 0.37
135 161 0.60
136 3 0.01
ACGTcount: A:0.19, C:0.31, G:0.30, T:0.20
Consensus pattern (135 bp):
CATCGACACAAGCTGACCCTTGGTACGGGCGGTTGCCTCGACCACCATCGACACAAGATGGCCCT
TGGTGCGGGCGGTTGCCTCAATCACCATCGGCACAAGATGGCCCTTGGTGTGGGTGGTTACCTCG
AACAC
Found at i:14612106 original size:180 final size:180
Alignment explanation
Indices: 14611530--14612107 Score: 415
Period size: 180 Copynumber: 3.2 Consensus size: 180
14611520 CGGGCAGTTG
* ** ** * * *
14611530 CCTCAACCACCATCGGCACAAGCT-AGGCCC-TGGTGCGAACGGTTGCCTCGATCACCATCGGCA
1 CCTCAACCACCATCGGCACAAGCTCA--CCCTTGGTACGGGCTCTTACCTCGACCACCATCGACA
* * * * * * *** * *
14611593 CAAGATGGCCCCTGGTGCAGGCGGTTGCATCGAACACCATCGACACATGCTAAGCCGTAGTGCGG
64 GAAGATGGCCACTGGTGCGGGCGGTTACCTCGAACACCATCGACACATACCGGGCCTTAGTGCGA
* * * * * ** * *
14611658 GCGGTTGCCTCGACCACCATC-GCACATGCCGAG-CCTTGGTGCGGG-CGGTTG-
129 GCAGTTGCATCAACCACCATCGGCAGAAGATG-GCCCTTGGTGTGGGAC--ATGA
* * *
14611709 TCTCGAA-CACCATCGGCACAAG-TCAGCCCTTGGTATGGGCTCTTACCTCGACCACCATCGGCA
1 CCTC-AACCACCATCGGCACAAGCTCA-CCCTTGGTACGGGCTCTTACCTCGACCACCATCGACA
* * * * * *
14611772 GAAGATGGCCACTGGTGTGGGCGGTTACCTCGAACACTATTGGCACATACTGGGCCTTAGTGCGG
64 GAAGATGGCCACTGGTGCGGGCGGTTACCTCGAACACCATCGACACATACCGGGCCTTAGTGCGA
* * * *** *
14611837 GCGGTTGCCTCAATCACCATCGGCAGAAGATGGCCCTTGGTGTGGGTGGTTA
129 GCAGTTGCATCAACCACCATCGGCAGAAGATGGCCCTTGGTGTGGGACATGA
* * * *
14611889 CCTCGAGCACCATCGACACAAGC-CGACCCTTGGTACGGGCTCTTGCCTCGACCACCATCGACAG
1 CCTCAACCACCATCGGCACAAGCTC-ACCCTTGGTACGGGCTCTTACCTCGACCACCATCGACAG
* * * *
14611953 AAGATGGCC-CTTGGTGCGGGTGGTTACGTCGAACACCATCGACACATGCCGGGCCTTGGTGCGA
65 AAGATGGCCAC-TGGTGCGGGCGGTTACCTCGAACACCATCGACACATACCGGGCCTTAGTGCGA
* * * * * * *
14612017 GCAGTTGCATCGACCACTATTGGCACG-CGTTGGCTCTTGGTGTGGGCACATGC
129 GCAGTTGCATCAACCACCATCGGCA-GAAGATGGCCCTTGGTGTGGG-ACATGA
** *
14612070 CCT-AACCACCATCGGCACCTGCTCACCCTCGGTACGGG
1 CCTCAACCACCATCGGCACAAGCTCACCCTTGGTACGGG
14612108 ATATACCTAT
Statistics
Matches: 317, Mismatches: 68, Indels: 27
0.77 0.17 0.07
Matches are distributed among these distances:
178 5 0.02
179 119 0.38
180 186 0.59
181 7 0.02
ACGTcount: A:0.19, C:0.32, G:0.29, T:0.20
Consensus pattern (180 bp):
CCTCAACCACCATCGGCACAAGCTCACCCTTGGTACGGGCTCTTACCTCGACCACCATCGACAGA
AGATGGCCACTGGTGCGGGCGGTTACCTCGAACACCATCGACACATACCGGGCCTTAGTGCGAGC
AGTTGCATCAACCACCATCGGCAGAAGATGGCCCTTGGTGTGGGACATGA
Found at i:14617706 original size:26 final size:26
Alignment explanation
Indices: 14617677--14617729 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14617667 TCGATCCGAT
14617677 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14617703 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14617729 C
1 C
14617730 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14619261 original size:45 final size:44
Alignment explanation
Indices: 14619048--14619516 Score: 227
Period size: 45 Copynumber: 10.5 Consensus size: 44
14619038 GTACGGGCAC
* * * * * *
14619048 TTGCCTCGACCGCCATCGACACAAGTTGGGCCC-TGATGCGGATGG
1 TTGCCTCGAACACCATCGGCACAAGCT-GGCCCTTGGTGCGG-CGG
* * * * * * *
14619093 TTACCTCGATCACCATC-CCACAAGATGGCCCCTGGTGAGGGTGG
1 TTGCCTCGAACACCATCGGCACAAGCTGGCCCTTGGTG-CGGCGG
* * * * * * *
14619137 TTACATCGAACACCATCGGCACATGCTGGGCCATGATGCGGGTGG
1 TTGCCTCGAACACCATCGGCACAAGCTGGCCCTTGGTGC-GGCGG
* * *
14619182 TTGCCTCGACCACCATCAGCACATGCTGAG-CCTTGGTGCAGGCGG
1 TTGCCTCGAACACCATCGGCACAAGCTG-GCCCTTGGTGC-GGCGG
* * **
14619227 TTGCCTCAAACACCATCGGCACAAGCCGGCCCTTGGTGCGGGCTC
1 TTGCCTCGAACACCATCGGCACAAGCTGGCCCTTGGTGC-GGCGG
* * * *** * * *
14619272 TTGCTTTGACCACCATCAATAGAAGATGGCCTCTT-GTACGAGCGG
1 TTGCCTCGAACACCATCGGCACAAGCTGGCC-CTTGGTGCG-GCGG
* * * * * *
14619317 TTGCCTCAAACACCATCGGCA-AATACTGGCCCCTAGTGTAGACGG
1 TTGCCTCGAACACCATCGGCACAA-GCTGGCCCTTGGTG-CGGCGG
** *
14619362 TTGCCTCGAACACCATCGGCACGTGCTGGGCCTTGGTGCGAG-GG
1 TTGCCTCGAACACCATCGGCACAAGCTGGCCCTTGGTGCG-GCGG
* * * **
14619406 TTGCCTTGAGCACCATCAGCACAAGCTGGCCCTTGGTGCGGCTT
1 TTGCCTCGAACACCATCGGCACAAGCTGGCCCTTGGTGCGGCGG
* * * * *
14619450 TTGCCTCG-ACTACCATAGGTAGAAGATGG-CCTCTAGTGCGG-GCG
1 TTGCCTCGAAC-ACCATCGGCACAAGCTGGCCCT-TGGTGCGGCG-G
* *
14619494 TTACGTCGAACACCATCGGCACA
1 TTGCCTCGAACACCATCGGCACA
14619517 TGCCGAGCCT
Statistics
Matches: 316, Mismatches: 90, Indels: 37
0.71 0.20 0.08
Matches are distributed among these distances:
43 10 0.03
44 114 0.36
45 187 0.59
46 5 0.02
ACGTcount: A:0.20, C:0.30, G:0.28, T:0.21
Consensus pattern (44 bp):
TTGCCTCGAACACCATCGGCACAAGCTGGCCCTTGGTGCGGCGG
Found at i:14619267 original size:90 final size:88
Alignment explanation
Indices: 14619145--14619465 Score: 263
Period size: 90 Copynumber: 3.6 Consensus size: 88
14619135 GGTTACATCG
* * * *
14619145 AACACCATCGGCACATGCTGGGCCATGATGCGGGTGGTTGCCTCGACCACCATCAGCACATGCTG
1 AACACCATCGGCACAAGCTGGCCCTTGGTGCGGGT-GTTGCCTCGACCACCATCAGCACATGCTG
14619210 AGCCTTGGTGC-AGGCGGTTGCCTCA
65 -GCCTTGGTGCGA-GCGGTTGCCTCA
* * * * ** * * *
14619235 AACACCATCGGCACAAGCCGGCCCTTGGTGCGGGCTCTTGCTTTGACCACCATCAATAGAAGATG
1 AACACCATCGGCACAAGCTGGCCCTTGGTGCGGG-TGTTGCCTCGACCACCATCAGCACATGCTG
* *
14619300 GCCTCTTGTACGAGCGGTTGCCTCA
65 GCCT-TGGTGCGAGCGGTTGCCTCA
* * * * * * * *
14619325 AACACCATCGGCA-AATACTGGCCCCTAGTGTAGACG-GTTGCCTCGAACACCATCGGCACGTGC
1 AACACCATCGGCACAA-GCTGGCCCTTGGTG-CG-GGTGTTGCCTCGACCACCATCAGCACATGC
**
14619388 TGGGCCTTGGTGCGAG-GGTTGCCTTG
63 T-GGCCTTGGTGCGAGCGGTTGCCTCA
* * * * *
14619414 AGCACCATCAGCACAAGCTGGCCCTTGGTGCGGCTTTTGCCTCGACTACCAT
1 AACACCATCGGCACAAGCTGGCCCTTGGTGCGGGTGTTGCCTCGACCACCAT
14619466 AGGTAGAAGA
Statistics
Matches: 175, Mismatches: 47, Indels: 20
0.72 0.19 0.08
Matches are distributed among these distances:
88 15 0.09
89 36 0.21
90 115 0.66
91 8 0.05
92 1 0.01
ACGTcount: A:0.20, C:0.31, G:0.28, T:0.21
Consensus pattern (88 bp):
AACACCATCGGCACAAGCTGGCCCTTGGTGCGGGTGTTGCCTCGACCACCATCAGCACATGCTGG
CCTTGGTGCGAGCGGTTGCCTCA
Found at i:14627157 original size:26 final size:26
Alignment explanation
Indices: 14627106--14627158 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14627096 CCGGTCTGAT
* **
14627106 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCATATG
14627132 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
14627158 C
1 C
14627159 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:14628549 original size:26 final size:26
Alignment explanation
Indices: 14628509--14628561 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14628499 CAAGTCCAAT
14628509 CTTAGACTGGAAATGAACTTCGTATG
1 CTTAGACTGGAAATGAACTTCGTATG
* *
14628535 CTTAGACTGGGAATGAACTTCTTATG
1 CTTAGACTGGAAATGAACTTCGTATG
14628561 C
1 C
14628562 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTTCGTATG
Found at i:14629069 original size:197 final size:197
Alignment explanation
Indices: 14628718--14629077 Score: 451
Period size: 197 Copynumber: 1.8 Consensus size: 197
14628708 TAAACATGGA
* *** * *
14628718 ATGAACTCCGTATGCCTAAGCCAACGCACGAAACGAACGTGTGGGCGCTCAACCAGTCGGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCAAGCGCTCAACCAGCCAGAGAGG
* * ** * *
14628783 CAGAATGCGCAAGTCAGGGATCGGCCCAGTCCCTCCTTGCGTGCTGTCGATCCTGCTGCTGGTCC
66 CAGAATGCGCAAGTCAGGGATCGACCCAGTCCCTCCTTACGTGCTACCAATCCTGCTGATGGTCC
** *
14628848 TGCTGTCGCAACCCTAGGTCCGGTCTGATCTTAGACTAGGAATAAATGAGACTTGCTTAGACTGG
131 TGCTACCGCAACCCTAGATCCGGTCTGATCTTAGACTAGGAATAAATGAGACTTGCTTAGACTGG
14628913 GG
196 GG
*
14628915 ATGAACTCCGTATGCCTAAGTCAACCCACGAAAC-AAGCGTGCAAGCGCTCAACCAGCCAGAGAG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAA-CGTGCAAGCGCTCAACCAGCCAGAGAG
* * *
14628979 GCAGAATGTGCAAG-CTGGGGATCGACCCGGTCCC-CCTCTACGTGCTACCAAT-CTCGCT-ATG
65 GCAGAATGCGCAAGTC-AGGGATCGACCCAGTCCCTCCT-TACGTGCTACCAATCCT-GCTGAT-
* *
14629040 GGTCCTGCTACCGTAACCCTCGATCCGGTCTGATCTTA
126 GGTCCTGCTACCGCAACCCTAGATCCGGTCTGATCTTA
14629078 AACAGGGAAT
Statistics
Matches: 137, Mismatches: 21, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
196 9 0.07
197 128 0.93
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (197 bp):
ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCAAGCGCTCAACCAGCCAGAGAGG
CAGAATGCGCAAGTCAGGGATCGACCCAGTCCCTCCTTACGTGCTACCAATCCTGCTGATGGTCC
TGCTACCGCAACCCTAGATCCGGTCTGATCTTAGACTAGGAATAAATGAGACTTGCTTAGACTGG
GG
Found at i:14629969 original size:26 final size:26
Alignment explanation
Indices: 14629931--14629983 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14629921 CCGGTTTGAT
14629931 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
14629957 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14629983 C
1 C
14629984 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14631334 original size:26 final size:26
Alignment explanation
Indices: 14631305--14631357 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14631295 TCGGTCCGAT
*
14631305 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
*
14631331 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
14631357 C
1 C
14631358 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:14631509 original size:25 final size:24
Alignment explanation
Indices: 14631473--14631522 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 24
14631463 CCGCTGTCGG
14631473 TCCGATCTTAGACTAGGAATGAAC
1 TCCGATCTTAGACTAGGAATGAAC
*
14631497 TCCGATGCTTAGACTGGGAATGAAC
1 TCCGAT-CTTAGACTAGGAATGAAC
14631522 T
1 T
14631523 TCGTATACCT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 6 0.25
25 18 0.75
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (24 bp):
TCCGATCTTAGACTAGGAATGAAC
Found at i:14631584 original size:173 final size:174
Alignment explanation
Indices: 14631274--14631587 Score: 477
Period size: 173 Copynumber: 1.8 Consensus size: 174
14631264 CCCCCTCTGT
* *
14631274 GTGCTGCTACCGATCTCGTTGTCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACT
1 GTGCTGCTACCGATCCCGCTGTCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACT
* * * * * *
14631339 GGGAATGAACTCCATATGCCTAAGTCAACCCATGAAATGAGCATGTGGGCGCTGAGCCGGTTGGA
66 GGGAATGAACTCCATATACCTAAGTCAACCCATGAAACGAGCATGCGGGCACTGAGCCGATCGGA
14631404 CAGGCATAATGTGTAAGCTGAGTATCAGCCCGGTCACCATTCAC
131 CAGGCATAATGTGTAAGCTGAGTATCAGCCCGGTCACCATTCAC
*
14631448 GTGCTGCTGCCGATCCCGCTGTCGGTCCGATCTTAGACTAGGAATGAACTCCG-ATGCTTAGACT
1 GTGCTGCTACCGATCCCGCTGTCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACT
* * * * * *
14631512 GGGAATGAACTTCGTATACCTAAGTCAACCCATGAAACGAGCGTGCGGGTATTGAGCTGATCGGA
66 GGGAATGAACTCCATATACCTAAGTCAACCCATGAAACGAGCATGCGGGCACTGAGCCGATCGGA
*
14631577 GAGGCATAATG
131 CAGGCATAATG
14631588 CGCAAGCCGG
Statistics
Matches: 124, Mismatches: 16, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
173 74 0.60
174 50 0.40
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (174 bp):
GTGCTGCTACCGATCCCGCTGTCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACT
GGGAATGAACTCCATATACCTAAGTCAACCCATGAAACGAGCATGCGGGCACTGAGCCGATCGGA
CAGGCATAATGTGTAAGCTGAGTATCAGCCCGGTCACCATTCAC
Found at i:14631625 original size:173 final size:173
Alignment explanation
Indices: 14631274--14631645 Score: 464
Period size: 173 Copynumber: 2.2 Consensus size: 173
14631264 CCCCCTCTGT
* *
14631274 GTGCTGCTACCGATCTCGTTGTCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACT
1 GTGCTGCT-CCGATCCCGCTGTCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACT
* * * * * *
14631339 GGGAATGAACTCCATATGCCTAAGTCAACCCATGAAATGAGCATGTGGGCGCTGAGCCGGTTGGA
65 GGGAATGAACTCCATATACCTAAGTCAACCCATGAAACGAGCATGCGGGCACTGAGCCGATCGGA
* * * * * *
14631404 CAGGCATAATGTGTAAGCTGAGTATCAGCCCGGTCACCATTCAC
130 CAGGCATAATGCGCAAGCCGAGGATCAGCCCAGTAACCATTCAC
14631448 GTGCTGCTGCCGATCCCGCTGTCGGTCCGATCTTAGACTAGGAATGAACTCCG-ATGCTTAGACT
1 GTGCTGCT-CCGATCCCGCTGTCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACT
* * * * * *
14631512 GGGAATGAACTTCGTATACCTAAGTCAACCCATGAAACGAGCGTGCGGGTATTGAGCTGATCGGA
65 GGGAATGAACTCCATATACCTAAGTCAACCCATGAAACGAGCATGCGGGCACTGAGCCGATCGGA
* * * *
14631577 GAGGCATAATGCGCAAGCCGGGGATCGGCCCAGTAACC-CTCTAC
130 CAGGCATAATGCGCAAGCCGAGGATCAGCCCAGTAACCATTC-AC
*
14631621 GTGCTGCT--GATCCTGCTGTCGGTCC
1 GTGCTGCTCCGATCCCGCTGTCGGTCC
14631646 CGCTGCCACA
Statistics
Matches: 171, Mismatches: 26, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
170 16 0.09
172 2 0.01
173 103 0.60
174 50 0.29
ACGTcount: A:0.23, C:0.26, G:0.28, T:0.24
Consensus pattern (173 bp):
GTGCTGCTCCGATCCCGCTGTCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTG
GGAATGAACTCCATATACCTAAGTCAACCCATGAAACGAGCATGCGGGCACTGAGCCGATCGGAC
AGGCATAATGCGCAAGCCGAGGATCAGCCCAGTAACCATTCAC
Found at i:14632937 original size:26 final size:26
Alignment explanation
Indices: 14632899--14632954 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
14632889 CTAGTCCGAT
14632899 CTTAGACTAGGAATGAACTCCATAAG
1 CTTAGACTAGGAATGAACTCCATAAG
* * *
14632925 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATAAG
14632951 CTTA
1 CTTA
14632955 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATAAG
Found at i:14633100 original size:24 final size:23
Alignment explanation
Indices: 14633069--14633115 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 23
14633059 GCTGTCGGTC
14633069 CGATCTTAGACTAGGAATGAACT
1 CGATCTTAGACTAGGAATGAACT
*
14633092 CGATGCTTAGACTCGGAATGAACT
1 CGAT-CTTAGACTAGGAATGAACT
14633116 TCGTATACCT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 4 0.18
24 18 0.82
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (23 bp):
CGATCTTAGACTAGGAATGAACT
Found at i:14633153 original size:172 final size:173
Alignment explanation
Indices: 14632760--14633200 Score: 474
Period size: 174 Copynumber: 2.5 Consensus size: 173
14632750 GCTTAAACCA
* * * * * * * ** * * * *
14632760 GGAATGAACTCTGTATGCCTAAGTCAACCAAAGAAACGAACGTACGGGTGCTCAGTCGACCGGAG
1 GGAATGAACTCCGTATACCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTGAGCCGATCGGAC
* ** * * * ** * *
14632825 AGGTAGGATGCGCAAGCCAAGGATCGGCCCGGTC-CCCCTCTGCGTGCTGCTGCCGATCTCGCTG
66 AGGCATAATGCGCAAGCCGAGGATCAGCCCGATCACCATTC-ACGTGCTGCTACCGATCTCGCTG
*
14632889 CTAGTCCGATCTTAGACTAGGAATGAACTCCATAAGCTTAGACTG
130 CTAGTCCGATCTTAGACTAGGAATGAACTCCAT-AGCTTAGACTC
* * ** * *
14632934 GGAATGAACTCCGTATGCTTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTGAGCCGGTTGGAC
1 GGAATGAACTCCGTATACCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTGAGCCGATCGGAC
* * *
14632999 AGGCATAATGTGTAAGCCGAGGATCAGCCCGATCACCATTCACGTGTTGCTACCGATCTCGCTG-
66 AGGCATAATGCGCAAGCCGAGGATCAGCCCGATCACCATTCACGTGCTGCTACCGATCTCGCTGC
* *
14633063 TCGGTCCGATCTTAGACTAGGAATGAACTCGAT-GCTTAGACTC
131 T-AGTCCGATCTTAGACTAGGAATGAACTCCATAGCTTAGACTC
* * *
14633106 GGAATGAACTTCGTATACCTAAGTCAACCCATGAAATGAGCGTGCGGGCACTGAGCCGATCGGAG
1 GGAATGAACTCCGTATACCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTGAGCCGATCGGAC
* *
14633171 AGGCATAATGCGCAAGCCGGGGATCGGCCC
66 AGGCATAATGCGCAAGCCGAGGATCAGCCC
14633201 AGTAACCCTC
Statistics
Matches: 223, Mismatches: 42, Indels: 6
0.82 0.15 0.02
Matches are distributed among these distances:
172 91 0.41
173 1 0.00
174 127 0.57
175 4 0.02
ACGTcount: A:0.25, C:0.26, G:0.28, T:0.20
Consensus pattern (173 bp):
GGAATGAACTCCGTATACCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTGAGCCGATCGGAC
AGGCATAATGCGCAAGCCGAGGATCAGCCCGATCACCATTCACGTGCTGCTACCGATCTCGCTGC
TAGTCCGATCTTAGACTAGGAATGAACTCCATAGCTTAGACTC
Found at i:14634532 original size:26 final size:26
Alignment explanation
Indices: 14634496--14634549 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
14634486 GGTCCGATCT
* *
14634496 TAGACTGGGAATGAATTTCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
14634522 TAGACTGGGAATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
14634548 TA
1 TA
14634550 AGTCGACCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCC
Found at i:14635342 original size:458 final size:458
Alignment explanation
Indices: 14634485--14635358 Score: 1297
Period size: 458 Copynumber: 1.9 Consensus size: 458
14634475 ATCCTGCTGC
*** * *
14634485 CGGTCCGATCTTAGACTGGGAATGAATTTCGTATGCCTAGACTGGGAATGAACTCCGTATGCCTA
1 CGGTCCGATCTTAGACTGGGAATGAACAACGTACGCCTAGACTGAGAATGAACTCCGTATGCCTA
* * * * ** *
14634550 AGTCGACCCATGAATTAAGCGTGCGAGCGCTGAACCAATCTTAGAGGCATAATGTGCAAGCCGGG
66 AGTCGACCCATGAATCAAGCGTACGAGCACTGAACAAATCGAAGAGGCATAATGCGCAAGCCGGG
* * **
14634615 GATCGCCAGGTCCTCCTCTGCATGCTGCAGATCCCGCTGCTGGTGTCGCTAGCACAACCCTCACT
131 GATCGCCAGATCCCCCTCTGCATGCTGCAGATCCCGCTGCTGGTCCCGCTAGCACAACCCTCACT
*
14634680 CCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAATGAGCGTGCG
196 CCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCGTGCG
14634745 GGCGCTCAACCGGCCGGAGAGGCAAAATGCACAAGTCGAGGATCGACCCAATCCCCCCTATGTGC
261 GGCGCTCAACCGGCCGGAGAGGCAAAATGCACAAGTCGAGGATCGACCCAATCCCCCCTATGTGC
* * * *
14634810 TGTCGATCCTGCTGCTGGTCCTGCTACCGTAACCCTCGGTCCGGTCCGATCTTAGACTAGAAATG
326 TATCGATCCTGCTACTGGTCCTGCTACCGTAACCCTCGATCCGATCCGATCTTAGACTAGAAATG
* *
14634875 GATGAGACTTGCTTAGAATGGGGATGCGCAAGCCGAAGATCAGCCCGGTCCCCCCTGCGTGCTAC
391 AACGAGACTTGCTTAGAATGGGGATGCGCAAGCCGAAGATCAGCCCGGTCCCCCCTGCGTGCTAC
14634940 TGT
456 TGT
**
14634943 CGGTCCGATCTTAGACTGGGAATGAACAACGTACGTGTAGACTGAGAATGAACTCCGTATGCCTA
1 CGGTCCGATCTTAGACTGGGAATGAACAACGTACGCCTAGACTGAGAATGAACTCCGTATGCCTA
*
14635008 AGTCGACCCATGAATCGAGCGTACGAGCACTGAACAAATCGAAGAGGCATAATGCGCAAGCCGGG
66 AGTCGACCCATGAATCAAGCGTACGAGCACTGAACAAATCGAAGAGGCATAATGCGCAAGCCGGG
* * *
14635073 GATAGGCCCGATCCCCCTCTGCGTGCTGTC-GATCCCGCTGTCT-GTCCCGCT-GCCACAACCCT
131 GAT-CGCCAGATCCCCCTCTGCATGCTG-CAGATCCCGCTG-CTGGTCCCGCTAG-CACAACCCT
**
14635135 CGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCG
192 CACTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCG
* * * * ***
14635200 TGCGGGTGCTCAACCGGTCGGAGAGGCAAAATGCGCAAGTCGAGGATCGGCCTGGT-CCCCCTAT
257 TGCGGGCGCTCAACCGGCCGGAGAGGCAAAATGCACAAGTCGAGGATCGACCCAATCCCCCCTAT
* * * *
14635264 GTGCTATCGATCTTGCTACTGGTCCTGCTACCGTAACCCTTGATCCGATCCGATCTTAGATTGGA
322 GTGCTATCGATCCTGCTACTGGTCCTGCTACCGTAACCCTCGATCCGATCCGATCTTAGACTAGA
*
14635329 AATGAACGAGACTTGCTTAGACTGGGGATG
387 AATGAACGAGACTTGCTTAGAATGGGGATG
14635359 AACTCTGTAT
Statistics
Matches: 369, Mismatches: 43, Indels: 8
0.88 0.10 0.02
Matches are distributed among these distances:
458 211 0.57
459 155 0.42
460 3 0.01
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.21
Consensus pattern (458 bp):
CGGTCCGATCTTAGACTGGGAATGAACAACGTACGCCTAGACTGAGAATGAACTCCGTATGCCTA
AGTCGACCCATGAATCAAGCGTACGAGCACTGAACAAATCGAAGAGGCATAATGCGCAAGCCGGG
GATCGCCAGATCCCCCTCTGCATGCTGCAGATCCCGCTGCTGGTCCCGCTAGCACAACCCTCACT
CCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCGTGCG
GGCGCTCAACCGGCCGGAGAGGCAAAATGCACAAGTCGAGGATCGACCCAATCCCCCCTATGTGC
TATCGATCCTGCTACTGGTCCTGCTACCGTAACCCTCGATCCGATCCGATCTTAGACTAGAAATG
AACGAGACTTGCTTAGAATGGGGATGCGCAAGCCGAAGATCAGCCCGGTCCCCCCTGCGTGCTAC
TGT
Found at i:14636737 original size:197 final size:197
Alignment explanation
Indices: 14636382--14636768 Score: 492
Period size: 197 Copynumber: 2.0 Consensus size: 197
14636372 TCCGACTGGG
* * *
14636382 GCTTAGACATGGAATGAAGTCCGTATGCCTAAACCAACCTATGAAACGAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * *
14636447 TCGACCGAAGAGGCAAAATGCACAAGTCAGGGATCGGCCTGGTCCCCCCCTATATGCTGTCGATC
66 TCGACCGAAGAGGCAAAATGCACAAGTCAGGGATCGACCTGATCCCCCCCTACATGCTGTCGATC
* * * * * *
14636512 CTGCTGCTGGTCCTGCTACCGTAACCCTCGGTCCGATCCGATCTTAGACTG-GAAATGAACGAGA
131 CCGCTACAGGTCCTACTACCGCAACCCTCGATCCGATCCGATCTTAGACTGAG-AATGAACGAGA
14636576 CTT
195 CTT
* **
14636579 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAACCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * ** * * * * *
14636643 GTCGGCC-AGAGAGGCAGAATGTGCAAGTCGGGGATCGATCTGATCCTCCTCTGCATGCTGTCGA
65 ATCGACCGA-AGAGGCAAAATGCACAAGTCAGGGATCGACCTGATCCCCCCCTACATGCTGTCGA
*
14636707 TCCCGCTACAGGTCCTACTACCGCAACCCTCGATCTGATCCGATCTTAGACTGAGAATGAAC
129 TCCCGCTACAGGTCCTACTACCGCAACCCTCGATCCGATCCGATCTTAGACTGAGAATGAAC
14636769 TCTATATGCC
Statistics
Matches: 161, Mismatches: 26, Indels: 6
0.83 0.13 0.03
Matches are distributed among these distances:
196 2 0.01
197 158 0.98
198 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.21
Consensus pattern (197 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCACGAAACGAGCGTGCGGGCGCTCAA
TCGACCGAAGAGGCAAAATGCACAAGTCAGGGATCGACCTGATCCCCCCCTACATGCTGTCGATC
CCGCTACAGGTCCTACTACCGCAACCCTCGATCCGATCCGATCTTAGACTGAGAATGAACGAGAC
TT
Found at i:14637651 original size:26 final size:26
Alignment explanation
Indices: 14637611--14637663 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14637601 TCGGTCTGAT
* *
14637611 CTTAGTCTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
*
14637637 CTTAGACTGGAAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
14637663 C
1 C
14637664 CTACGTCGAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:14639640 original size:26 final size:26
Alignment explanation
Indices: 14639589--14639641 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14639579 TCGATCCGAT
*
14639589 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14639615 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14639641 C
1 C
14639642 CTAATTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14641120 original size:148 final size:148
Alignment explanation
Indices: 14640850--14641120 Score: 357
Period size: 148 Copynumber: 1.8 Consensus size: 148
14640840 TCCAGTTGGT
* * *
14640850 TCTTAGATCAGGAATGAACTTCGCATGCCTAAGTCAACCCACGAAACAAGCGTACGGGCGCTCAG
1 TCTTAGATCAGGAATGAACTCCGCATGCCTAAGTCAACCCACAAAACAAGCGTACGGGCACTCAG
* * * * * * * *
14640915 CTGGTCAGAAAGGCATGATGCGTAAGCTGAGGATCGATCTGATCCCCCTCTGTGTGCTGCTGCCG
66 CCGGTCAGAAAGACATAATACGCAAGCTGAGGATCGACCCGATCCCCCTCTGCGTGCTGCTGCCG
14640980 ATCCCGCTATCGGTCTGA
131 ATCCCGCTATCGGTCTGA
* * * * *
14640998 TCTTAGA-CTAGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCGTGCGGGCACTGA
1 TCTTAGATC-AGGAATGAACTCCGCATGCCTAAGTCAACCCACAAAACAAGCGTACGGGCACTCA
*
14641062 GCCGGTC-GAAGAGACATAATACGCAAGCTGGGGATCGACCCGATCCCCCTCTGCGTGCT
65 GCCGGTCAGAA-AGACATAATACGCAAGCTGAGGATCGACCCGATCCCCCTCTGCGTGCT
14641121 ACCGATCCCG
Statistics
Matches: 104, Mismatches: 17, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
147 4 0.04
148 100 0.96
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (148 bp):
TCTTAGATCAGGAATGAACTCCGCATGCCTAAGTCAACCCACAAAACAAGCGTACGGGCACTCAG
CCGGTCAGAAAGACATAATACGCAAGCTGAGGATCGACCCGATCCCCCTCTGCGTGCTGCTGCCG
ATCCCGCTATCGGTCTGA
Found at i:14641543 original size:196 final size:194
Alignment explanation
Indices: 14641180--14641549 Score: 467
Period size: 196 Copynumber: 1.9 Consensus size: 194
14641170 TAGACATGGA
* * * **
14641180 ATGAACTCCGTATGCCTAAGCCAACCCGTGAAACGAGCGTGTGGGTGCTCAACTGGTGGAGAGGC
1 ATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAACTGGCAGAGAGGC
* * * *
14641245 AGAATGCACAAGTCGAGGATCGGCCCAGTCCCTCCCTACATCTGTCGATCCTGCTACTAGTCCTG
66 AGAATGCACAAGCCGAGGACCAGCCCAGTCCCTCCCTACATCTGTCGATCCCGCTACTAGTCCTG
* *
14641310 CTACCGCAACCCTCGGTTCGGTTCGATCTTAGACTGGGAATGAATGAGACTTGCTTAGATGGGG
131 CTACCGCAACCCTCGATCCGGTTCGATCTTAGACTGGGAATGAATGAGACTTGCTTAGATGGGG
*
14641374 ATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTC-AGTCGGCCAGAGAG
1 ATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAACT-GG-CAGAGAG
** * ** * * * *
14641438 GCAGAATGTGCAAGCCGGGGACCAGCCTGGTCCCTCTCTACGTGTTGTCGATCCCGCTGC-AGGT
64 GCAGAATGCACAAGCCGAGGACCAGCCCAGTCCCTCCCTACAT-CTGTCGATCCCGCTACTA-GT
* *
14641502 CCTGCTATCGTAACCCTCGATCCGG-TCTGATCTTAGACTGGGAATGAA
127 CCTGCTACCGCAACCCTCGATCCGGTTC-GATCTTAGACTGGGAATGAA
14641550 CTCCATATGC
Statistics
Matches: 148, Mismatches: 23, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
193 2 0.01
194 49 0.33
195 41 0.28
196 56 0.38
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (194 bp):
ATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAACTGGCAGAGAGGC
AGAATGCACAAGCCGAGGACCAGCCCAGTCCCTCCCTACATCTGTCGATCCCGCTACTAGTCCTG
CTACCGCAACCCTCGATCCGGTTCGATCTTAGACTGGGAATGAATGAGACTTGCTTAGATGGGG
Found at i:14642510 original size:148 final size:148
Alignment explanation
Indices: 14642242--14642511 Score: 328
Period size: 148 Copynumber: 1.8 Consensus size: 148
14642232 CTGATTGGGG
*
14642242 CTTAGACCGGGAATGAACTCCGCATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCTCTCAAC
1 CTTAGACCGGGAATGAACTCCGCATGCCTAAGTCAACCAATGAAACGAGCGTACGGGCTCTCAAC
** * * * *
14642307 CGGCCAAAGAGGCAGGATGCGTAAGCCGAGGATCGACCTGATCCCCCTCTGCGTGCTGCTGCCGA
66 CGAACAAAGAGGCAGAATACGTAAGCCGAGGATCGACCCGATCCCCCTCTACGTGCTGCTGCCGA
14642372 TCCCGCTGCCAGTCCGAT
131 TCCCGCTGCCAGTCCGAT
* * * * * *
14642390 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCAATGAAACGAGCGTGCGGG-TGCTGAG
1 CTTAGACCGGGAATGAACTCCGCATGCCTAAGTCAACCAATGAAACGAGCGTACGGGCT-CTCAA
* * * * * * *
14642454 CC-AATAGGAGAGGCATAATACGTAAGCCGGGGATTGGCCCGATCCCCTTCTACGTGCT
65 CCGAACA-AAGAGGCAGAATACGTAAGCCGAGGATCGACCCGATCCCCCTCTACGTGCT
14642512 ATCGATCCCG
Statistics
Matches: 100, Mismatches: 20, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
147 2 0.02
148 98 0.98
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (148 bp):
CTTAGACCGGGAATGAACTCCGCATGCCTAAGTCAACCAATGAAACGAGCGTACGGGCTCTCAAC
CGAACAAAGAGGCAGAATACGTAAGCCGAGGATCGACCCGATCCCCCTCTACGTGCTGCTGCCGA
TCCCGCTGCCAGTCCGAT
Found at i:14642839 original size:9 final size:9
Alignment explanation
Indices: 14642815--14642856 Score: 59
Period size: 9 Copynumber: 4.7 Consensus size: 9
14642805 CAATTTGTCC
*
14642815 TGTATTATTT
1 TGTATT-TTA
14642825 TGTATTTTA
1 TGTATTTTA
14642834 TGTATTTTA
1 TGTATTTTA
14642843 TGTATTTTA
1 TGTATTTTA
14642852 T-TATT
1 TGTATT
14642857 ATGTATATAT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
8 4 0.13
9 21 0.68
10 6 0.19
ACGTcount: A:0.21, C:0.00, G:0.10, T:0.69
Consensus pattern (9 bp):
TGTATTTTA
Found at i:14642848 original size:18 final size:19
Alignment explanation
Indices: 14642815--14642868 Score: 67
Period size: 19 Copynumber: 2.9 Consensus size: 19
14642805 CAATTTGTCC
*
14642815 TGTATTATTTTGTATTTTA
1 TGTATTATTATGTATTTTA
14642834 TGTATT-TTATGTATTTTA
1 TGTATTATTATGTATTTTA
*
14642852 T-TATTATGTATATATTT
1 TGTATTAT-TATGTATTT
14642869 ATTTATTTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
17 4 0.13
18 13 0.42
19 14 0.45
ACGTcount: A:0.24, C:0.00, G:0.09, T:0.67
Consensus pattern (19 bp):
TGTATTATTATGTATTTTA
Done.