Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19866354
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 74000 characters in sequence are not A, C, G, or T
File 62 of 100
Found at i:14643338 original size:26 final size:24
Alignment explanation
Indices: 14643296--14643349 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 24
14643286 CTGGGAGTGA
*
14643296 GAAAAATTTTTTAGAAATTTTTGG
1 GAAAAATTTTTTAGAAATTTCTGG
* *
14643320 CGAAAATTTTTTCTGGAAATTTCTGG
1 -GAAAAATTTTT-TAGAAATTTCTGG
14643346 GAAA
1 GAAA
14643350 TTTCCAGATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 14 0.56
26 11 0.44
ACGTcount: A:0.35, C:0.06, G:0.19, T:0.41
Consensus pattern (24 bp):
GAAAAATTTTTTAGAAATTTCTGG
Found at i:14644022 original size:60 final size:60
Alignment explanation
Indices: 14643964--14644305 Score: 436
Period size: 59 Copynumber: 5.8 Consensus size: 60
14643954 AAAAAAATTC
14643964 CAAAAAAAATATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAA-TTT
1 CAAAAAAAA-ATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTT
* * *
14644024 C--CAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTCAGAAATAAA-TTT
1 CAAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTT
*
14644081 CAAAAAAAAAACATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTT
1 C-AAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTT
***
14644142 C-AAAAAAAGGGTTTTT-GAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTT
1 CAAAAAAAAATATTTTTAG-GGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTT
****
14644201 CAAAAAAAGGGGGTTTTT-GAGGAAAAGTTGAAAGTATCAATTTTCCTT-GAAAATCGAAATTTT
1 CAAAAAAA-AATATTTTTAG-GGAAAAGTTGAAAGTATCAATTTTCCTTAG-AAAT--AAATTTT
14644264 C---AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCC
1 CAAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCC
14644306 CTACAAAAAA
Statistics
Matches: 256, Mismatches: 15, Indels: 23
0.87 0.05 0.08
Matches are distributed among these distances:
57 49 0.19
58 6 0.02
59 85 0.33
60 62 0.24
61 46 0.18
63 8 0.03
ACGTcount: A:0.44, C:0.08, G:0.15, T:0.33
Consensus pattern (60 bp):
CAAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTT
Found at i:14644277 original size:120 final size:117
Alignment explanation
Indices: 14643958--14644305 Score: 488
Period size: 120 Copynumber: 2.9 Consensus size: 117
14643948 AAAAATAAAA
* * *
14643958 AAATTCCAAAAAAAATATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATT
1 AAATTTCAAAAAAAAAACATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATT
* *
14644023 TCCAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTCAGAAAT
66 TTCAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCAGAAAT
14644075 AAATTTCAAAAAAAAAACATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATT
1 AAATTTCAAAAAAAAAACATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATT
*
14644140 TTCAAAAAA-AGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAT
66 TTCAAAAAATA---TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCAGAAAT
*****
14644194 AAATTTTCAAAAAAAGGGGGTTTTT-GAGGAAAAGTTGAAAGTATCAATTTTCCTT-GAAAATCG
1 AAA-TTTCAAAAAAAAAACATTTTTAG-GGAAAAGTTGAAAGTATCAATTTTCCTTAG-AAAT--
14644257 AAATTTTCAAAAAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCC
61 AAATTTTCAAAAAATATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCC
14644306 CTACAAAAAA
Statistics
Matches: 210, Mismatches: 11, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
116 1 0.00
117 70 0.33
119 45 0.21
120 79 0.38
122 14 0.07
123 1 0.00
ACGTcount: A:0.44, C:0.08, G:0.15, T:0.33
Consensus pattern (117 bp):
AAATTTCAAAAAAAAAACATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATT
TTCAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCAGAAAT
Found at i:14648116 original size:8 final size:8
Alignment explanation
Indices: 14648095--14648170 Score: 50
Period size: 8 Copynumber: 9.4 Consensus size: 8
14648085 AACACTGGAT
14648095 GAAAAATGA
1 GAAAAA-GA
14648104 G-AAAAGA
1 GAAAAAGA
*
14648111 GAAAAAAA
1 GAAAAAGA
*
14648119 AAAAAAGA
1 GAAAAAGA
* *
14648127 AAAAAAGG
1 GAAAAAGA
14648135 GAAAAAATGA
1 G-AAAAA-GA
*
14648145 GAAAATGA
1 GAAAAAGA
14648153 -AAAAATGA
1 GAAAAA-GA
14648161 -AAAAAGA
1 GAAAAAGA
14648168 GAA
1 GAA
14648171 CCAAATTAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 11
0.74 0.11 0.15
Matches are distributed among these distances:
7 9 0.17
8 33 0.61
9 10 0.19
10 2 0.04
ACGTcount: A:0.75, C:0.00, G:0.20, T:0.05
Consensus pattern (8 bp):
GAAAAAGA
Found at i:14648165 original size:16 final size:16
Alignment explanation
Indices: 14648096--14648165 Score: 56
Period size: 16 Copynumber: 4.3 Consensus size: 16
14648086 ACACTGGATG
14648096 AAAAATGAGAAAAGA-GA
1 AAAAATGA-AAAA-ATGA
*
14648113 AAAAA--AAAAAAAGAA
1 AAAAATGAAAAAATG-A
*
14648128 AAAAAGGGAAAAAATGA
1 AAAAA-TGAAAAAATGA
*
14648145 GAAAATGAAAAAATGA
1 AAAAATGAAAAAATGA
14648161 AAAAA
1 AAAAA
14648166 GAGAACCAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 11
0.75 0.07 0.19
Matches are distributed among these distances:
13 1 0.02
14 5 0.11
15 7 0.16
16 14 0.32
17 10 0.23
18 7 0.16
ACGTcount: A:0.77, C:0.00, G:0.17, T:0.06
Consensus pattern (16 bp):
AAAAATGAAAAAATGA
Found at i:14649527 original size:42 final size:42
Alignment explanation
Indices: 14649408--14649778 Score: 555
Period size: 42 Copynumber: 9.0 Consensus size: 42
14649398 GTCTAGGAGT
*
14649408 ATTTACTTTT-CAAAGTTCGT--TGCCTCTGTTTAGAGGAGCA
1 ATTTATTTTTCCAAAG-TCGTGGTGCCTCTGTTTAGAGGAGCA
*
14649448 ATTTACTTTTCC-AAGTTCGT--TGCCTCTGTTTAGAGGAGCA
1 ATTTATTTTTCCAAAG-TCGTGGTGCCTCTGTTTAGAGGAGCA
*
14649488 ATTTATTTTTCCAAAGTCATGGTGCCTCTGTTTAGAGGAGCA
1 ATTTATTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
*
14649530 ATTTATTTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
1 ATTTATTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
14649572 ATTTATTTTT-CAAAGTTTCGT--TGCCTCTGTTTAGAGGAGCA
1 ATTTATTTTTCCAAAG--TCGTGGTGCCTCTGTTTAGAGGAGCA
*
14649613 ATTTATTTTTCCAAAGTCGTGGTACCTCTGTTTAGAGGAGCA
1 ATTTATTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
* *
14649655 ATTTA-CTTTCCAAAGTCGTGGTACCTCTGTTTAGAGGAGCA
1 ATTTATTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
14649696 ATTTATTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
1 ATTTATTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
* *
14649738 ATTTACTTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGC
1 ATTTATTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGC
14649779 TTTGGTAAAA
Statistics
Matches: 311, Mismatches: 10, Indels: 18
0.92 0.03 0.05
Matches are distributed among these distances:
40 56 0.18
41 79 0.25
42 172 0.55
43 4 0.01
ACGTcount: A:0.22, C:0.17, G:0.22, T:0.39
Consensus pattern (42 bp):
ATTTATTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
Found at i:14649611 original size:83 final size:81
Alignment explanation
Indices: 14649408--14649778 Score: 541
Period size: 83 Copynumber: 4.5 Consensus size: 81
14649398 GTCTAGGAGT
*
14649408 ATTTACTTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCAATTTACTTTTCC-AAGTTCGT--TG
1 ATTTACTTTTCAAAG-TCGTTGCCTCTGTTTAGAGGAGCAATTTATTTTTCCAAAG-TCGTGGTG
14649470 CCTCTGTTTAGAGGAGCA
64 CCTCTGTTTAGAGGAGCA
* * *
14649488 ATTTATTTTTCCAAAGTCATGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTTCAAAGTCGTGGT
1 ATTTACTTTT-CAAAGTC--GTTGCCTCTGTTTAGAGGAGCAATTTATTTTTCCAAAGTCGTGGT
14649553 GCCTCTGTTTAGAGGAGCA
63 GCCTCTGTTTAGAGGAGCA
* *
14649572 ATTTATTTTTCAAAGTTTCGTTGCCTCTGTTTAGAGGAGCAATTTATTTTTCCAAAGTCGTGGTA
1 ATTTACTTTTCAAAG--TCGTTGCCTCTGTTTAGAGGAGCAATTTATTTTTCCAAAGTCGTGGTG
14649637 CCTCTGTTTAGAGGAGCA
64 CCTCTGTTTAGAGGAGCA
* *
14649655 ATTTACTTTCCAAAGTCGTGGTACCTCTGTTTAGAGGAGCAATTTATTTTTCCAAAGTCGTGGTG
1 ATTTACTTTTCAAAGTCGT--TGCCTCTGTTTAGAGGAGCAATTTATTTTTCCAAAGTCGTGGTG
14649720 CCTCTGTTTAGAGGAGCA
64 CCTCTGTTTAGAGGAGCA
14649738 ATTTACTTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGC
1 ATTTACTTTTC-AAAGTCGT--TGCCTCTGTTTAGAGGAGC
14649779 TTTGGTAAAA
Statistics
Matches: 267, Mismatches: 13, Indels: 18
0.90 0.04 0.06
Matches are distributed among these distances:
80 11 0.04
81 9 0.03
82 35 0.13
83 152 0.57
84 58 0.22
85 2 0.01
ACGTcount: A:0.22, C:0.17, G:0.22, T:0.39
Consensus pattern (81 bp):
ATTTACTTTTCAAAGTCGTTGCCTCTGTTTAGAGGAGCAATTTATTTTTCCAAAGTCGTGGTGCC
TCTGTTTAGAGGAGCA
Found at i:14649649 original size:125 final size:123
Alignment explanation
Indices: 14649408--14649778 Score: 586
Period size: 125 Copynumber: 3.0 Consensus size: 123
14649398 GTCTAGGAGT
* *
14649408 ATTTACTTTTCAAAGTTCGT--TGCCTCTGTTTAGAGGAGCAATTTACTTTTCCAAGTTCGTTGC
1 ATTTACTTTTCAAAG-TCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTTCGTTGC
*
14649471 CTCTGTTTAGAGGAGCAATTTATTTTTCCAAAGTCATGGTGCCTCTGTTTAGAGGAGCA
65 CTCTGTTTAGAGGAGCAATTTATTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
*
14649530 ATTTATTTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTTTCGTTG
1 ATTTA-CTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAG-TTCGTTG
*
14649595 CCTCTGTTTAGAGGAGCAATTTATTTTTCCAAAGTCGTGGTACCTCTGTTTAGAGGAGCA
64 CCTCTGTTTAGAGGAGCAATTTATTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
* *
14649655 ATTTACTTTCCAAAGTCGTGGTACCTCTGTTTAGAGGAGCAATTTATTTTTCCAAAG-TCGTGGT
1 ATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTT-CAAAGTTCGT--T
* *
14649719 GCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGC
63 GCCTCTGTTTAGAGGAGCAATTTATTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGC
14649779 TTTGGTAAAA
Statistics
Matches: 231, Mismatches: 11, Indels: 11
0.91 0.04 0.04
Matches are distributed among these distances:
122 9 0.04
123 13 0.06
124 76 0.33
125 133 0.58
ACGTcount: A:0.22, C:0.17, G:0.22, T:0.39
Consensus pattern (123 bp):
ATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTTCGTTGCC
TCTGTTTAGAGGAGCAATTTATTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
Found at i:14649802 original size:10 final size:10
Alignment explanation
Indices: 14649787--14649846 Score: 84
Period size: 11 Copynumber: 5.7 Consensus size: 10
14649777 GCTTTGGTAA
14649787 AAAAAAAAAC
1 AAAAAAAAAC
14649797 AAAAAAAAAC
1 AAAAAAAAAC
*
14649807 AAAAAAAAAA
1 AAAAAAAAAC
14649817 ACAAAAAAAAC
1 A-AAAAAAAAC
14649828 AAAAAAAAAACC
1 -AAAAAAAAA-C
14649840 AAAAAAA
1 AAAAAAA
14649847 TGTTGAGTTG
Statistics
Matches: 45, Mismatches: 2, Indels: 5
0.87 0.04 0.10
Matches are distributed among these distances:
10 20 0.44
11 23 0.51
12 2 0.04
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAC
Found at i:14649802 original size:12 final size:12
Alignment explanation
Indices: 14649785--14649846 Score: 80
Period size: 12 Copynumber: 5.6 Consensus size: 12
14649775 GAGCTTTGGT
14649785 AAAAAAAAAAAC
1 AAAAAAAAAAAC
14649797 --AAAAAAAAAC
1 AAAAAAAAAAAC
14649807 AAAAAAAAAAAC
1 AAAAAAAAAAAC
14649819 ---AAAAAAAAC
1 AAAAAAAAAAAC
*
14649828 AAAAAAAAAACC
1 AAAAAAAAAAAC
14649840 AAAAAAA
1 AAAAAAA
14649847 TGTTGAGTTG
Statistics
Matches: 44, Mismatches: 1, Indels: 10
0.80 0.02 0.18
Matches are distributed among these distances:
9 9 0.20
10 10 0.23
12 25 0.57
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (12 bp):
AAAAAAAAAAAC
Found at i:14649813 original size:22 final size:22
Alignment explanation
Indices: 14649785--14649846 Score: 108
Period size: 21 Copynumber: 2.9 Consensus size: 22
14649775 GAGCTTTGGT
14649785 AAAAAAAAAAACAAAAAAAAAC
1 AAAAAAAAAAACAAAAAAAAAC
14649807 AAAAAAAAAAAC-AAAAAAAAC
1 AAAAAAAAAAACAAAAAAAAAC
*
14649828 AAAAAAAAAACCAAAAAAA
1 AAAAAAAAAAACAAAAAAA
14649847 TGTTGAGTTG
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
21 20 0.53
22 18 0.47
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (22 bp):
AAAAAAAAAAACAAAAAAAAAC
Found at i:14649846 original size:1 final size:1
Alignment explanation
Indices: 14649785--14649837 Score: 70
Period size: 1 Copynumber: 53.0 Consensus size: 1
14649775 GAGCTTTGGT
* * * *
14649785 AAAAAAAAAAACAAAAAAAAACAAAAAAAAAAACAAAAAAAACAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
14649838 CCAAAAAAAT
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
1 44 1.00
ACGTcount: A:0.92, C:0.08, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:14650014 original size:9 final size:9
Alignment explanation
Indices: 14650000--14650031 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
14649990 CAATTTATCT
14650000 TGTATTTTA
1 TGTATTTTA
14650009 TGTATTTTA
1 TGTATTTTA
14650018 TGTATTTTA
1 TGTATTTTA
14650027 T-TATT
1 TGTATT
14650032 ATGTATATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 4 0.17
9 19 0.83
ACGTcount: A:0.22, C:0.00, G:0.09, T:0.69
Consensus pattern (9 bp):
TGTATTTTA
Found at i:14650035 original size:15 final size:16
Alignment explanation
Indices: 14650000--14650064 Score: 62
Period size: 18 Copynumber: 3.9 Consensus size: 16
14649990 CAATTTATCT
14650000 TGTATTTTATGTATTTTA
1 TGTATTTTAT-TA-TTTA
14650018 TGTATTTTATTA-TTA
1 TGTATTTTATTATTTA
14650033 TGTATATATTTATTATTTA
1 TG--TAT-TTTATTATTTA
*
14650052 TTTATTTT-TTATT
1 TGTATTTTATTATT
14650065 AGATTAGATT
Statistics
Matches: 42, Mismatches: 1, Indels: 11
0.78 0.02 0.20
Matches are distributed among these distances:
15 10 0.24
16 3 0.07
17 8 0.19
18 17 0.40
19 4 0.10
ACGTcount: A:0.25, C:0.00, G:0.06, T:0.69
Consensus pattern (16 bp):
TGTATTTTATTATTTA
Found at i:14650495 original size:25 final size:25
Alignment explanation
Indices: 14650467--14650520 Score: 65
Period size: 26 Copynumber: 2.2 Consensus size: 25
14650457 CTGGGAGTGA
*
14650467 GAAAA-ATTTTTTAGAAATTTTTGG
1 GAAAATATTTTTTAGAAATTTCTGG
* *
14650491 CGAAAATTTTTTTTGGAAATTTCTGG
1 -GAAAATATTTTTTAGAAATTTCTGG
14650517 GAAA
1 GAAA
14650521 TTTCCAGATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 9 0.36
26 16 0.64
ACGTcount: A:0.35, C:0.04, G:0.19, T:0.43
Consensus pattern (25 bp):
GAAAATATTTTTTAGAAATTTCTGG
Found at i:14650685 original size:20 final size:20
Alignment explanation
Indices: 14650660--14650697 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
14650650 ACTTCCGGTG
*
14650660 AAATTTCCAGATTCCGGCGA
1 AAATTTCCAGAATCCGGCGA
*
14650680 AAATTTCTAGAATCCGGC
1 AAATTTCCAGAATCCGGC
14650698 ACCGGTGTTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (20 bp):
AAATTTCCAGAATCCGGCGA
Found at i:14651049 original size:9 final size:8
Alignment explanation
Indices: 14651031--14651065 Score: 54
Period size: 8 Copynumber: 4.4 Consensus size: 8
14651021 TTTTTATTTC
14651031 TTTGTTTA
1 TTTGTTTA
14651039 TTTGTTTTA
1 TTTG-TTTA
14651048 TTTGTTTA
1 TTTGTTTA
14651056 TTT-TTTA
1 TTTGTTTA
14651063 TTT
1 TTT
14651066 ATTAGATTAG
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
7 7 0.27
8 11 0.42
9 8 0.31
ACGTcount: A:0.11, C:0.00, G:0.09, T:0.80
Consensus pattern (8 bp):
TTTGTTTA
Found at i:14651343 original size:117 final size:117
Alignment explanation
Indices: 14651136--14651544 Score: 560
Period size: 118 Copynumber: 3.4 Consensus size: 117
14651126 ATAAAATAAA
*
14651136 AAATTTCTAAAAAAATATATTTTTA-GGAAAAGTTGAAAAGTATCAATTTTTCCTTAGAAATAAA
1 AAATTTC-AAAAAAAAATATTTTTAGGGAAAAGTTG-AAAGTATCAA-TTTTCCTTAGAAATAAA
*
14651200 TTTCCAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC-TCAGAAAT-
63 TTTCCAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGA-AAATC
* *
14651254 AAATTTCAAAAAAAAAACATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAAAT
1 AAATTTC-AAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATT
*
14651319 TCCAAAAACTATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATC
65 TCCAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATC
* *
14651372 GAAATTTCCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATT
1 -AAATTTCAAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATT
* * *
14651437 TTCAAAAAAAAGGGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATC
65 TCCAAAAAATA-----TTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATC
*
14651495 GAAATTTTC---AAAAATTATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCC
1 -AAA-TTTCAAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCC
14651545 CTACAAAAAA
Statistics
Matches: 265, Mismatches: 16, Indels: 17
0.89 0.05 0.06
Matches are distributed among these distances:
117 65 0.25
118 95 0.36
119 17 0.06
121 39 0.15
123 45 0.17
124 4 0.02
ACGTcount: A:0.43, C:0.09, G:0.14, T:0.34
Consensus pattern (117 bp):
AAATTTCAAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTT
CCAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATC
Found at i:14655461 original size:26 final size:26
Alignment explanation
Indices: 14655432--14655481 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
14655422 AGTCTGATCA
*
14655432 AGACTGGGAATGAACTCTGTATGCTT
1 AGACTGGGAATGAACTCCGTATGCTT
14655458 AGACTGGGAATGAACTCCGTATGC
1 AGACTGGGAATGAACTCCGTATGC
14655482 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTT
Found at i:14656512 original size:19 final size:20
Alignment explanation
Indices: 14656488--14656535 Score: 89
Period size: 20 Copynumber: 2.5 Consensus size: 20
14656478 AGGTTTGATG
14656488 AGGGATAGG-GGCCAATATA
1 AGGGATAGGAGGCCAATATA
14656507 AGGGATAGGAGGCCAATATA
1 AGGGATAGGAGGCCAATATA
14656527 AGGGATAGG
1 AGGGATAGG
14656536 TTCTCGATAG
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
19 9 0.32
20 19 0.68
ACGTcount: A:0.38, C:0.08, G:0.40, T:0.15
Consensus pattern (20 bp):
AGGGATAGGAGGCCAATATA
Found at i:14657898 original size:145 final size:145
Alignment explanation
Indices: 14657662--14658017 Score: 532
Period size: 145 Copynumber: 2.4 Consensus size: 145
14657652 TCAGCCGACT
** * * * *
14657662 AGAGAGGCAGGATGCGTAAGTTGAGGATCGGCCCGGTCCCCCTCTGCGTGTTGCTGTCGATCCCA
1 AGAGAGGCATAATGCGCAAGTCGAGGATCAGCCCGGTCCCCCTCTAC--G-TGCTGTCGATCCCA
14657727 CGGCCGATTCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAAACCATGAAACAAGCAT
63 CGGCCGATTCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAAACCATGAAACAAGCAT
*
14657792 GTGAGCACTGAGCCGGTC
128 GTGAGCACTGAGCCAGTC
14657810 AGAGAGGCATAATGCGCAAGTCGAGGATCAGCCCGGTCCCCCTCTACGTGCTGTCGATCCCACGG
1 AGAGAGGCATAATGCGCAAGTCGAGGATCAGCCCGGTCCCCCTCTACGTGCTGTCGATCCCACGG
* *
14657875 CCGATTCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAAACCATGAAACGAGCGTGTG
66 CCGATTCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAAACCATGAAACAAGCATGTG
**
14657940 AGTGCTGAGCCAGTC
131 AGCACTGAGCCAGTC
* * * * * *
14657955 GGAGAGGTATAATGCGCAAGCCGAGGATCAGCCCGTTCCCTCTCTACGTGTTGTCGATCCCAC
1 AGAGAGGCATAATGCGCAAGTCGAGGATCAGCCCGGTCCCCCTCTACGTGCTGTCGATCCCAC
14658018 TACCGGTCCC
Statistics
Matches: 191, Mismatches: 17, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
145 149 0.78
146 1 0.01
148 41 0.21
ACGTcount: A:0.24, C:0.27, G:0.28, T:0.21
Consensus pattern (145 bp):
AGAGAGGCATAATGCGCAAGTCGAGGATCAGCCCGGTCCCCCTCTACGTGCTGTCGATCCCACGG
CCGATTCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAAACCATGAAACAAGCATGTG
AGCACTGAGCCAGTC
Found at i:14659088 original size:196 final size:196
Alignment explanation
Indices: 14658733--14659101 Score: 449
Period size: 196 Copynumber: 1.9 Consensus size: 196
14658723 GAGAGATGGA
* * * * *
14658733 ATGAACTCCATATGCCTAAGCCAACCCACGACACAAGCATCCGGGTGCTCAATCGGCCGGAGAGG
1 ATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCATCCGAGCGCTCAACCGGCCAGAGAGG
* * * * *
14658798 TAGAATGCGCAAGTTGGGGATCGGCCTGATCCCCCTCTGCGTGCTGCCGATCCTGATGCTGGTCT
66 TAGAATGCGCAAGTAGGGGATCGGCCCGATCCCCCTCTACGTGCTGCCGATCCCGATGCTGGTCC
* * *
14658863 TGCTGCAGCAACCTTTGATTCGATTCGATCTTAGACTGGGAATGAATGAGACTTGCTTAGACTGG
131 TGCT-CAGCAACCCTCGATCCGATTCGATCTTAGACTGGGAATGAATGAGACTTGCTTAGACTGG
14658928 GG
195 GG
* * * * * *
14658930 ATGAACTCCATAT-CGTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCGGCCAGAGAGG
1 ATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCATCCGAGCGCTCAACCGGCCAGAGAGG
* * * * *
14658994 TAGAATGTGCAAGTAGGGGATCGGCCCGATCCCTCTTTACGTGCTGTCGATCCCGCTG-TGGGTC
66 TAGAATGCGCAAGTAGGGGATCGGCCCGATCCCCCTCTACGTGCTGCCGATCCCGATGCT-GGTC
14659058 CTGCT-ATGTCAACCCTCGATCC-AGTTCGATCTTAGACTGGGAAT
130 CTGCTCA-G-CAACCCTCGATCCGA-TTCGATCTTAGACTGGGAAT
14659102 AAACCCTGTA
Statistics
Matches: 144, Mismatches: 24, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
194 1 0.01
195 3 0.02
196 127 0.88
197 13 0.09
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (196 bp):
ATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGCATCCGAGCGCTCAACCGGCCAGAGAGG
TAGAATGCGCAAGTAGGGGATCGGCCCGATCCCCCTCTACGTGCTGCCGATCCCGATGCTGGTCC
TGCTCAGCAACCCTCGATCCGATTCGATCTTAGACTGGGAATGAATGAGACTTGCTTAGACTGGG
G
Found at i:14659979 original size:26 final size:26
Alignment explanation
Indices: 14659950--14660000 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
14659940 CCTGTTCGAT
* *
14659950 CTTAGACTGGGAATGAACTCTGTATC
1 CTTAGACTGAGAATGAACTCCGTATC
*
14659976 CTTAGTCTGAGAATGAACTCCGTAT
1 CTTAGACTGAGAATGAACTCCGTAT
14660001 GCCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATC
Found at i:14660953 original size:148 final size:148
Alignment explanation
Indices: 14660683--14660953 Score: 357
Period size: 148 Copynumber: 1.8 Consensus size: 148
14660673 CCGGTTGGGG
* *
14660683 CTTAGATCGGGAATGAACTCCGCATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCACTCAGC
1 CTTAGATCGGGAATGAACTCCGCATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCACTCAGC
* * * * * *
14660748 TGGTCGAAGAGGCAGGATGCGTAAGCCGAGGATCGGCTCGGTCCCCCTCTGCGTGCTGCTGTCGA
66 CGGTCGAAGAGGCAGAATGCGTAAGCCGAGGATCGACCCGATCCCCCTCTGCATGCTGCTGTCGA
14660813 TCTCGCTGCTGGTTCGAT
131 TCTCGCTGCTGGTTCGAT
* * ** * *
14660831 CTTAGA-CTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTGAG
1 CTTAGATC-GGGAATGAACTCCGCATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCACTCAG
* * *
14660895 CCGGTC-AGAGAGGTATAATGCGTAAGCCGAGGATCGACCCGATCCCTCTCTGCATGCTG
65 CCGGTCGA-AGAGGCAGAATGCGTAAGCCGAGGATCGACCCGATCCCCCTCTGCATGCTG
14660954 TCGATCCCGT
Statistics
Matches: 104, Mismatches: 17, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
147 2 0.02
148 102 0.98
ACGTcount: A:0.23, C:0.27, G:0.30, T:0.21
Consensus pattern (148 bp):
CTTAGATCGGGAATGAACTCCGCATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCACTCAGC
CGGTCGAAGAGGCAGAATGCGTAAGCCGAGGATCGACCCGATCCCCCTCTGCATGCTGCTGTCGA
TCTCGCTGCTGGTTCGAT
Found at i:14662050 original size:26 final size:26
Alignment explanation
Indices: 14662011--14662061 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
14662001 GGTCTGATCC
14662011 TAGACTGGATATGAACTCCGTATGCT
1 TAGACTGGATATGAACTCCGTATGCT
*
14662037 TAGACTGGGA-ATGAGCTCCGTATGC
1 TAGACT-GGATATGAACTCCGTATGC
14662062 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTGGATATGAACTCCGTATGCT
Found at i:14663468 original size:26 final size:26
Alignment explanation
Indices: 14663432--14663484 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14663422 CCAGTTTGAT
14663432 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
*
14663458 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
14663484 C
1 C
14663485 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:14665140 original size:538 final size:530
Alignment explanation
Indices: 14663458--14665148 Score: 1788
Period size: 538 Copynumber: 3.2 Consensus size: 530
14663448 ACTCCGTATG
** * * * *
14663458 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGAGTGCTGAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTGAGC
* * * * * * * * *
14663523 CGGTCAGAGAGGCATAATGCGCAAGTCGGGGATCGGTCTGTTCCCCCTCTGCGTGTTGTCAATCT
66 AGGTCAGAGAGGCATAATGCGTAAGCCGGGGATCGGCCCGATCCCCCTCTGC-TGCTGTCGATCC
* * * *
14663588 CGCTGCCGGTCCCGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTA
130 CG-TGCCAGTCCCGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCGTA
* * * * * *
14663653 TGCCTAAGCTAACCCACAAAACGAGCGTGCGGGTGCTAAAAC-AGCCAGAGAGGCAGAAGGGGCA
194 TGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGA-CC-GAGAGGCAGAATGTGCA
* * * * **
14663717 AGTCGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCTGTTGCTGGTTCTACTGCCGCAAC
257 AGTCGGGGATCGACCCGATCCCCCCTGCGTGCAG-CGATCCTGATGCTGGTCCTGCTGTAGCAAC
* *
14663782 C-CTCGATCC-AGTCCGATCTTAGACTGGGAATGAACGAGACTTGCTTAGACTGGGGATGAACTC
321 CTTTAG-TCCGA-TCCGATCTTAGACTGGGAATGAACGAGACTTGCTTAGACTGGGGATGAACTC
* * * * *
14663845 CGTATGCCTAAGTCAACCCACGAAACGAGTGTACGGGCACTCAATCGACCAGAGAGGTAGAATGT
384 CGTATGCCTAAGTCAACTCACGAAACGAGCGTACGGGCGCTCAACCGACCAGAGAGGCAGAATGT
* * * *
14663910 GCAAGCTGGGGATCGGCCCGATCCCCCTCTGCGA-GCTGTCGATCCCGCTGTGGGTCTTGCTGCC
449 GCAAGC-GGGGATCGGCTCGGTCCCCCTCTGC-ATGCTGTCGAT-CCGCTGCGGGTC-TGCT-TC
** **
14663974 GCAATGCTCGATCCGGTCTGAT
509 GCAACCCTCGATCCGGTCCAAT
** * *
14663996 CTTAGACTGGGAATGAACTCCGTATAACTAAGTCAACCCACGAAATGAGCGTGCGGGCGTTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTGAGC
* * * * * * *
14664061 CGGTC-GAAGAGGCATAATGCGTAAGCTGAGGATTGGCCCAAT--CCCTCT-CTGC-GT-GCTAC
66 AGGTCAG-AGAGGCATAATGCGTAAGCCGGGGATCGGCCCGATCCCCCTCTGCTGCTGTCGATCC
* *
14664120 C--G--A-TCCCGCTGCCACAACCCTCGGTCTGGTTGGGGCTTAGACATGGATTGAACTCCGTAT
130 CGTGCCAGTCCCGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCGTAT
* * * ***
14664180 GCCTAAGCCAACCCACGAAACGCGTGTGCGGGCGCTCAACCTGTTGGAGAGGCAGAATGTGCAAG
195 GCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAACC-GACCGAGAGGCAGAATGTGCAAG
* * * *
14664245 TCGGGGATCGACCCGATTCCCCC--C-T--A-CG-TGCT-AT-C-GATCCTGCTGTTGCAACCTT
259 TCGGGGATCGACCCGATCCCCCCTGCGTGCAGCGATCCTGATGCTGGTCCTGCTGTAGCAACCTT
** * * * *
14664300 CGGTCCGATACGATCTTAGACTGGGAATGAATGAGACTTGCTTAGACTGGTGATGAACTCCGCAT
324 TAGTCCGATCCGATCTTAGACTGGGAATGAACGAGACTTGCTTAGACTGGGGATGAACTCCGTAT
* * *
14664365 GCCTAAGTCAACGT-ACGAAACGAGCGTACGGGTGCTCAGCCGACCAGAGAGGCAGAATGTGTAA
389 GCCTAAGTCAAC-TCACGAAACGAGCGTACGGGCGCTCAACCGACCAGAGAGGCAGAATGTGCAA
* * *
14664429 GCCGGGGATTGGTTCGGTCCCCCTCTGCATGCTGTCGATGCCGCTGCGGGTCCT-ATAATCGCAA
453 G-CGGGGATCGGCTCGGTCCCCCTCTGCATGCTGTCGAT-CCGCTGCGGGT-CTGCT--TCGCAA
14664493 CCCTCGATCCGGTCCAAT
513 CCCTCGATCCGGTCCAAT
* * * *
14664511 CTTAGA-TGGGAAATGAACTCTGTATGCCTAAGTCAACCCATGGAATGAGCGTACGGGCGTTGAG
1 CTTAGACTGGG-AATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTGAG
* **
14664575 CCA-GTCGGAGAGGCATAATATGTAAGCCGGGGATCGGCCCGATCCCCCTCTGCATGCTGTCGAT
65 -CAGGTCAGAGAGGCATAATGCGTAAGCCGGGGATCGGCCCGATCCCCCTCTGC-TGCTGTCGAT
* * *
14664639 CCCGTTGCCAGTCCCACTGCCACAACCCTTGGTCTGGCTGGGGCTTAGACATGGAATGAACTTCG
128 CCCG-TGCCAGTCCCGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCG
* ** *
14664704 TATGCCTAAGCCAACCCATGAAATAAGCATGCGGGTGCTCAACCGACCGTAGAGGCAGAATGTGC
192 TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGACCG-AGAGGCAGAATGTGC
*
14664769 AAGTCGGGGATCGACCCGATCCCCCCTGCGTGCAGCAGATCCTGCTGCTGGTCCTGCTGTAGCAA
256 AAGTCGGGGATCGACCCGATCCCCCCTGCGTGCAGC-GATCCTGATGCTGGTCCTGCTGTAGCAA
* *
14664834 CCTTTAGTCCGATCCGATCTTAGACTGGAAATGAACGAGACTTGCTTAGATTGGGGATGAACTCC
320 CCTTTAGTCCGATCCGATCTTAGACTGGGAATGAACGAGACTTGCTTAGACTGGGGATGAACTCC
* * * * * *
14664899 GTATGCCTAAGTGAACTCATGAAATGAGCGTGCGAGCGCTCAACCGGCCAGAGAGGCAGAATGTG
385 GTATGCCTAAGTCAACTCACGAAACGAGCGTACGGGCGCTCAACCGACCAGAGAGGCAGAATGTG
* * * * * **
14664964 CAAGTCGGGGATCGACTCGGTCCCTCTCTGCATGCTGCCAATCTCACTGCAAGTACTGCTTCTGC
450 CAAG-CGGGGATCGGCTCGGTCCCCCTCTGCATGCTGTCGATC-CGCTGCGGGT-CTGCTTC-GC
* *
14665029 AACCCTTGATCCAGTCCAAT
511 AACCCTCGATCCGGTCCAAT
* * *
14665049 CTTATACTGGGAATGAACTCCGTATGCCTAAGTCAACCTACGAAATGAGCAG-ACGGGCACT-AT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGC-GTACGGGCGCTGA-
* *** *
14665112 GCAGGCCAGAGAGGCGGGATGCGTAAGCCGTGGATCG
64 GCAGGTCAGAGAGGCATAATGCGTAAGCCGGGGATCG
14665149 ATCAAGTGAT
Statistics
Matches: 950, Mismatches: 158, Indels: 90
0.79 0.13 0.08
Matches are distributed among these distances:
514 6 0.01
515 270 0.28
516 7 0.01
517 7 0.01
518 4 0.00
519 5 0.01
520 2 0.00
521 4 0.00
523 1 0.00
524 2 0.00
526 128 0.13
527 126 0.13
529 2 0.00
530 1 0.00
532 3 0.00
533 3 0.00
534 3 0.00
535 4 0.00
536 7 0.01
537 9 0.01
538 350 0.37
539 6 0.01
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (530 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTGAGC
AGGTCAGAGAGGCATAATGCGTAAGCCGGGGATCGGCCCGATCCCCCTCTGCTGCTGTCGATCCC
GTGCCAGTCCCGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCGTATG
CCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGACCGAGAGGCAGAATGTGCAAGTC
GGGGATCGACCCGATCCCCCCTGCGTGCAGCGATCCTGATGCTGGTCCTGCTGTAGCAACCTTTA
GTCCGATCCGATCTTAGACTGGGAATGAACGAGACTTGCTTAGACTGGGGATGAACTCCGTATGC
CTAAGTCAACTCACGAAACGAGCGTACGGGCGCTCAACCGACCAGAGAGGCAGAATGTGCAAGCG
GGGATCGGCTCGGTCCCCCTCTGCATGCTGTCGATCCGCTGCGGGTCTGCTTCGCAACCCTCGAT
CCGGTCCAAT
Found at i:14666973 original size:45 final size:45
Alignment explanation
Indices: 14666937--14667403 Score: 244
Period size: 45 Copynumber: 10.4 Consensus size: 45
14666927 GTATGGGCAC
* * * * *
14666937 TTGCCTCGACCGCCATCGACACAAGCTGGGCCTTGGTGCAGACGA
1 TTGCCTCGACCACCATCGACACAAGCTGGGCCTTGGTACGGGCGG
* * * * * *
14666982 TTACCTCGATCACCATCGGCACAAGATGGCCCCTGGTGA-GGGCGG
1 TTGCCTCGACCACCATCGACACAAGCTGGGCCTTGGT-ACGGGCGG
* * * * * * *
14667027 TTGCATCGAACACCATCGGCACATGCTGGGTCATGGTGCGGGCGG
1 TTGCCTCGACCACCATCGACACAAGCTGGGCCTTGGTACGGGCGG
* * *
14667072 TTGCCTCGACCACTATCGACACATA-CTGAGCTTTGGTACGGGCGG
1 TTGCCTCGACCACCATCGACACA-AGCTGGGCCTTGGTACGGGCGG
* * * * ** * **
14667117 TTTCCTCGAACACCATCGGCACAAGCCGACCCTTGGTATGGGCTC
1 TTGCCTCGACCACCATCGACACAAGCTGGGCCTTGGTACGGGCGG
* * * * * *
14667162 TTGCCTCGACCACCATCGATAGAAGAT-AGCCTTTGGTATGAGCGG
1 TTGCCTCGACCACCATCGACACAAGCTGGGCC-TTGGTACGGGCGG
* * * * * * * *
14667207 TTACCTCGAACACCAT-TAGCACATGCTGGCCCTTGGTGCGAGCGA
1 TTGCCTCGACCACCATCGA-CACAAGCTGGGCCTTGGTACGGGCGG
* * ***
14667252 TTGTCTCGAACACCATC-AGCATGTGCTGGGCCTTGGTACGGGCGG
1 TTGCCTCGACCACCATCGA-CACAAGCTGGGCCTTGGTACGGGCGG
* * ** * * *
14667297 TTGCCTCGACCACCATCGGCAGAAAATGGCCCTTGGTGCGGGTGG
1 TTGCCTCGACCACCATCGACACAAGCTGGGCCTTGGTACGGGCGG
* * * * ** ** **
14667342 TTACCTTGAGCACCATCGGCACAAG-TCGACCCTTGGTGTGGGCTC
1 TTGCCTCGACCACCATCGACACAAGCT-GGGCCTTGGTACGGGCGG
14667387 TTGCCTCGACCACCATC
1 TTGCCTCGACCACCATC
14667404 AGTAGAAGAT
Statistics
Matches: 317, Mismatches: 95, Indels: 20
0.73 0.22 0.05
Matches are distributed among these distances:
44 6 0.02
45 309 0.97
46 2 0.01
ACGTcount: A:0.19, C:0.30, G:0.28, T:0.22
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGACACAAGCTGGGCCTTGGTACGGGCGG
Found at i:14667126 original size:90 final size:90
Alignment explanation
Indices: 14666923--14667338 Score: 277
Period size: 90 Copynumber: 4.6 Consensus size: 90
14666913 CAGGCTGCCG
* ** * * * * * * * *
14666923 TTTGGTATGGGCACTTGCCTCGACCGCCATCGACACAAGCTGGGCCTTGGTGCAGACGATTACCT
1 TTTGGTACGGGCGGTTGCCTCGAACACCATCGGCACATGCTGGCCCTTGGTGCGGGCGATTGCCT
* * *
14666988 CGATCACCATCGGCACA-AGATG-GCC
66 CGACCACCATCGACACATA-CTGAG-C
** * ** * *
14667013 CCTGGTGA-GGGCGGTTGCATCGAACACCATCGGCACATGCTGGGTCATGGTGCGGGCGGTTGCC
1 TTTGGT-ACGGGCGGTTGCCTCGAACACCATCGGCACATGCTGGCCCTTGGTGCGGGCGATTGCC
*
14667077 TCGACCACTATCGACACATACTGAGC
65 TCGACCACCATCGACACATACTGAGC
* * * * ** **
14667103 TTTGGTACGGGCGGTTTCCTCGAACACCATCGGCACAAGCCGACCCTTGGTATGGGCTCTTGCCT
1 TTTGGTACGGGCGGTTGCCTCGAACACCATCGGCACATGCTGGCCCTTGGTGCGGGCGATTGCCT
* * *
14667168 CGACCACCATCGATAGA-AGAT-AGCC
66 CGACCACCATCGACACATA-CTGAG-C
* * * ** * *
14667193 TTTGGTATGAGCGGTTACCTCGAACACCATTAGCACATGCTGGCCCTTGGTGCGAGCGATTGTCT
1 TTTGGTACGGGCGGTTGCCTCGAACACCATCGGCACATGCTGGCCCTTGGTGCGGGCGATTGCCT
* ** * *
14667258 CGAACACCATC-AGCATGTGCTGGGC
66 CGACCACCATCGA-CACATACTGAGC
* * * ***
14667283 CTTGGTACGGGCGGTTGCCTCGACCACCATCGGCAGAAAATGGCCCTTGGTGCGGG
1 TTTGGTACGGGCGGTTGCCTCGAACACCATCGGCACATGCTGGCCCTTGGTGCGGG
14667339 TGGTTACCTT
Statistics
Matches: 247, Mismatches: 70, Indels: 18
0.74 0.21 0.05
Matches are distributed among these distances:
89 5 0.02
90 238 0.96
91 4 0.02
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.22
Consensus pattern (90 bp):
TTTGGTACGGGCGGTTGCCTCGAACACCATCGGCACATGCTGGCCCTTGGTGCGGGCGATTGCCT
CGACCACCATCGACACATACTGAGC
Found at i:14667469 original size:90 final size:90
Alignment explanation
Indices: 14667297--14667483 Score: 241
Period size: 90 Copynumber: 2.1 Consensus size: 90
14667287 GTACGGGCGG
* * * * *
14667297 TTGCCTCGACCACCATCGGCAGAAAATGGCCCTTGGTGCGGGTGGTTACCTTGAGCACCATCGGC
1 TTGCCTCGACCACCATCAGCAGAAAATGGCCCCTGGTGCGGATGGTTACCTCGAACACCATCGGC
* *
14667362 ACAAGTCGACCCTTGGTGTGGGCTC
66 ACAAGCCGACCCTTGGTGTGGGCAC
* * *
14667387 TTGCCTCGACCACCATCAGTAGAAGATGGCCCCTGGTGCGGATGGTTACGTCGAACACCATCGAG
1 TTGCCTCGACCACCATCAGCAGAAAATGGCCCCTGGTGCGGATGGTTACCTCGAACACCATCG-G
* *
14667452 -ACATGCCGAGCCTTGGTGTGGGCAC
65 CACAAGCCGACCCTTGGTGTGGGCAC
*
14667477 ATGCCTC
1 TTGCCTC
14667484 AATCTGGTGT
Statistics
Matches: 83, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
90 82 0.99
91 1 0.01
ACGTcount: A:0.19, C:0.30, G:0.29, T:0.21
Consensus pattern (90 bp):
TTGCCTCGACCACCATCAGCAGAAAATGGCCCCTGGTGCGGATGGTTACCTCGAACACCATCGGC
ACAAGCCGACCCTTGGTGTGGGCAC
Found at i:14667539 original size:45 final size:45
Alignment explanation
Indices: 14667488--14667583 Score: 138
Period size: 45 Copynumber: 2.1 Consensus size: 45
14667478 TGCCTCAATC
* * *
14667488 TGGTGTGGGCGGTTGCCTCGACCACCATCAGCACACGCTGGCCCT
1 TGGTGTGGGCAGTGGCATCGACCACCATCAGCACACGCTGGCCCT
* *
14667533 TGGTGTGGGTAGTGGCATCGACCACCATCGGCACACGCTGGCCCT
1 TGGTGTGGGCAGTGGCATCGACCACCATCAGCACACGCTGGCCCT
*
14667578 TAGTGT
1 TGGTGT
14667584 AGGTACATGC
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.15, C:0.31, G:0.32, T:0.22
Consensus pattern (45 bp):
TGGTGTGGGCAGTGGCATCGACCACCATCAGCACACGCTGGCCCT
Found at i:14667602 original size:45 final size:45
Alignment explanation
Indices: 14667508--14667607 Score: 121
Period size: 45 Copynumber: 2.2 Consensus size: 45
14667498 GGTTGCCTCG
* * * * * *
14667508 ACCACCATCAGCACACGCTGGCCCTTGGTGTGGGTAGTGGCATCG
1 ACCACCATCGGCACACGCTGGCCCTTAGTGTAGGTAATGGCACCA
*
14667553 ACCACCATCGGCACACGCTGGCCCTTAGTGTAGGTACAT-GCCCCA
1 ACCACCATCGGCACACGCTGGCCCTTAGTGTAGGTA-ATGGCACCA
14667598 ACCACCATCG
1 ACCACCATCG
14667608 ACACCTGCTC
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
45 46 0.98
46 1 0.02
ACGTcount: A:0.21, C:0.36, G:0.25, T:0.18
Consensus pattern (45 bp):
ACCACCATCGGCACACGCTGGCCCTTAGTGTAGGTAATGGCACCA
Found at i:14676689 original size:26 final size:26
Alignment explanation
Indices: 14676653--14676705 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14676643 TCGGTTTGAT
14676653 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
14676679 CTTAGACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCCGTATG
14676705 C
1 C
14676706 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:14677228 original size:196 final size:196
Alignment explanation
Indices: 14676862--14677232 Score: 496
Period size: 196 Copynumber: 1.9 Consensus size: 196
14676852 AGACATGGAT
*
14676862 TGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAACCGACATGAGAGGC
1 TGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGAGCGCTCAACCGACATGAGAGGC
* * * *
14676927 AGAATGCGCAAGTCGGGGATCAGGCCGGTCCCCCCAGCATGCTATCGATCCTGTTGCTGGTCTTG
66 AGAATACGCAAGTCGGGGATCAGGCCGGTCCCCCCAGCATGCTATCGATCCTGCTGCGGGTCTTA
* * * * *
14676992 CTATCGCAACCCTCGGTCTAGTCTGATCTTAGATTGGGAATGAACGAAACTTGCTTAGACTGGGG
131 CTACCACAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACGAAACTTGCTTAGACTGGGG
14677057 A
196 A
* * * *
14677058 TGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGAGCGCTCAACCGGCCA-GAGAGG
1 TGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGAGCGCTCAACC-GACATGAGAGG
* ** * * *
14677122 CAGAATATGCAAGTCGGGGATC-GATTCGGTCCCCCTCTGCTTGCTGTCGATCCTGCTGCGGGTC
65 CAGAATACGCAAGTCGGGGATCAG-GCCGGTCCCCC-CAGCATGCTATCGATCCTGCTGCGGGTC
* *
14677186 TTACTACCACAACCCTTGATCCGGTCTGATCTT-GACTGGGAATGAAC
128 TTACTACCACAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAAC
14677233 TCCGTATGCC
Statistics
Matches: 150, Mismatches: 22, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
195 1 0.01
196 97 0.65
197 52 0.35
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.22
Consensus pattern (196 bp):
TGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGAGCGCTCAACCGACATGAGAGGC
AGAATACGCAAGTCGGGGATCAGGCCGGTCCCCCCAGCATGCTATCGATCCTGCTGCGGGTCTTA
CTACCACAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACGAAACTTGCTTAGACTGGGG
A
Found at i:14679037 original size:197 final size:196
Alignment explanation
Indices: 14678693--14679067 Score: 452
Period size: 197 Copynumber: 1.9 Consensus size: 196
14678683 GCTTAGACAT
*
14678693 GGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGAGCGCTCAACCGACAGGAG
1 GGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGAGCGCTCAACCGACAGAAG
* * **
14678758 AGGTAGAATGCGCAAGTCGGGGATCGACCCGATCCCCCCTTGCGTGCTACCGATCCTGCTGTTGG
66 AGGTAGAATACGCAAGTCGGGGATCGACCCGATCCCCCCTTGCATGCTACCGATCCTGCTGACGG
** * *
14678823 TTCTGCTGTCGCAACCCTCGGTCCGATCTGATCTTAGACTAGG-AATGAATGAAACTTGCTTAGA
131 TTCTGCTACCACAACCCTCGATCCGATCTGATCTT-GACT-GGAAATGAATGAAACTTGCTTAGA
14678887 TTG
194 TTG
* * * * * * * * * *
14678890 GGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCTGCCA-AA
1 GGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGAGCGCTCAACC-GACAGAA
* * * * **
14678954 GAGGTAGAATATGCAAGTCGGGGATCGACTCGGT-CCCTCTCTGCATGCTGTCGATCCTGCT-AC
65 GAGGTAGAATACGCAAGTCGGGGATCGACCCGATCCCCCCT-TGCATGCTACCGATCCTGCTGAC
14679017 GGTTCCTGCTACCACAACCCTCGATCCGATCTGATCTTGACTGGAAATGAA
129 GGTT-CTGCTACCACAACCCTCGATCCGATCTGATCTTGACTGGAAATGAA
14679068 CTCCGTATAC
Statistics
Matches: 149, Mismatches: 25, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
195 2 0.01
196 19 0.13
197 125 0.84
198 3 0.02
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (196 bp):
GGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGAGCGCTCAACCGACAGAAG
AGGTAGAATACGCAAGTCGGGGATCGACCCGATCCCCCCTTGCATGCTACCGATCCTGCTGACGG
TTCTGCTACCACAACCCTCGATCCGATCTGATCTTGACTGGAAATGAATGAAACTTGCTTAGATT
G
Found at i:14679083 original size:460 final size:462
Alignment explanation
Indices: 14678222--14679126 Score: 1173
Period size: 460 Copynumber: 2.0 Consensus size: 462
14678212 GTCTGGTTGA
* *
14678222 GGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
1 GGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGAGCGCTCA
* * * * * **
14678287 ACCGGTCGAAGAGGCAAAATATGCAAGTCGGGGATCAGCCTAGTCCCCCCCTGTGTGCTGTCGAT
66 ACCGGACGAAGAGGCAAAATACGCAAGTCGGGGATCACCCGAGTCCCCCCCTGCGTGCTACCGAT
* * * * *
14678352 CTTGTTATTGGTCCTGCTGCTGCAACCCTTGGTCCAGTCCGATCTTAGACTGGGAATGAACGAGA
131 CCTGCTATTGGTCCTGCTGCTGCAACCCTCGGTCCAGTCCGATCTTAGACTAGGAATGAACGAAA
* *
14678417 CTTGCTTAAACTGGGGATGAACTCTGTTTGCCTAAGTCAACCCACGAAACAAGCTGCGGGCGCTC
196 CTTGCTTAAACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCTGCGGGCGCTC
* * * * * * *
14678482 CGCTAGCCAGAGAGGTAGAATGTGCAAGTCGGGGATCGATTTGATCCCTCTCTACGTGTTGCTAA
261 AGCTAGCCAAAGAGGTAGAATATGCAAGTCGGGGATCGACTCGATCCCTCTCTACATGCTGCTAA
* * * *
14678547 TCCTGCTATAGGTCCTGCTGCCACAACCCTCAATCCGGTCTGATCTTACACTGGGAATAAACTCT
326 TCCTGCTATAGGTCCTGCTACCACAACCCTCAATCCGATCTGATCTTACACTGGAAATAAACTCC
* * * *
14678612 GTATGCCTAAGTCAACCCATG-AAC-GGACGGGCACTACGTCGGCTAGAGAGGCAACCCTCGGTC
391 GTATACCTAAGTCAACCCACGAAACGGGACGGGCACTACGCCGGCCAGAGAGGCAACCCTCGGTC
14678675 CGACTGG
456 CGACTGG
14678682 GGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGAGCGCTCA
1 GGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGAGCGCTCA
* * * * *
14678747 ACC-GACAGGAGAGGTAGAATGCGCAAGTCGGGGATCGACCCGA-TCCCCCCTTGCGTGCTACCG
66 ACCGGAC-GAAGAGGCAAAATACGCAAGTCGGGGATC-ACCCGAGTCCCCCCCTGCGTGCTACCG
* * * *
14678810 ATCCTGCTGTTGGTTCTGCTG-TCGCAACCCTCGGTCC-GATCTGATCTTAGACTAGGAATGAAT
129 ATCCTGCTATTGGTCCTGCTGCT-GCAACCCTCGGTCCAG-TCCGATCTTAGACTAGGAATGAAC
* * * **
14678873 GAAACTTGCTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGG
192 GAAACTTGCTTAAACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGC-TGCGGG
* *
14678938 CGCTCAGCCT-GCCAAAGAGGTAGAATATGCAAGTCGGGGATCGACTCGGTCCCTCTCTGCATGC
256 CGCTCAG-CTAGCCAAAGAGGTAGAATATGCAAGTCGGGGATCGACTCGATCCCTCTCTACATGC
* * * *
14679002 TG-TCGATCCTGCTA-CGGTTCCTGCTACCACAACCCTCGATCCGATCTGATCTT-GACTGGAAA
320 TGCT-AATCCTGCTATAGG-TCCTGCTACCACAACCCTCAATCCGATCTGATCTTACACTGGAAA
*
14679064 TGAACTCCGTATACCTAAGTCAACCCACGAAACGAGTGGACGGGCACTACGCCGGCCAGAGAG
383 TAAACTCCGTATACCTAAGTCAACCCACGAAAC--G-GGACGGGCACTACGCCGGCCAGAGAG
14679127 ACGGATGCGC
Statistics
Matches: 380, Mismatches: 52, Indels: 21
0.84 0.11 0.05
Matches are distributed among these distances:
459 4 0.01
460 242 0.64
461 108 0.28
462 2 0.01
465 24 0.06
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.22
Consensus pattern (462 bp):
GGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGAGCGCTCA
ACCGGACGAAGAGGCAAAATACGCAAGTCGGGGATCACCCGAGTCCCCCCCTGCGTGCTACCGAT
CCTGCTATTGGTCCTGCTGCTGCAACCCTCGGTCCAGTCCGATCTTAGACTAGGAATGAACGAAA
CTTGCTTAAACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACAAGCTGCGGGCGCTC
AGCTAGCCAAAGAGGTAGAATATGCAAGTCGGGGATCGACTCGATCCCTCTCTACATGCTGCTAA
TCCTGCTATAGGTCCTGCTACCACAACCCTCAATCCGATCTGATCTTACACTGGAAATAAACTCC
GTATACCTAAGTCAACCCACGAAACGGGACGGGCACTACGCCGGCCAGAGAGGCAACCCTCGGTC
CGACTGG
Found at i:14679937 original size:26 final size:26
Alignment explanation
Indices: 14679908--14679960 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14679898 TCAGTCCGAT
14679908 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
14679934 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14679960 C
1 C
14679961 CTCAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14681409 original size:12 final size:12
Alignment explanation
Indices: 14681392--14681421 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
14681382 TCTACTACGT
14681392 GCTGTCGATCTC
1 GCTGTCGATCTC
*
14681404 GCTGTCGGTCTC
1 GCTGTCGATCTC
14681416 GCTGTC
1 GCTGTC
14681422 ACAACCTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.03, C:0.33, G:0.30, T:0.33
Consensus pattern (12 bp):
GCTGTCGATCTC
Found at i:14682715 original size:26 final size:26
Alignment explanation
Indices: 14682679--14682731 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14682669 CCGGTTCGAT
14682679 CTTAAACTGGGAATGAACTCCATATG
1 CTTAAACTGGGAATGAACTCCATATG
* *
14682705 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCATATG
14682731 C
1 C
14682732 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCATATG
Found at i:14683052 original size:25 final size:26
Alignment explanation
Indices: 14683024--14683075 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14683014 CCAGTCCGAT
14683024 CTTAGACT-GGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14683049 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14683075 C
1 C
14683076 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 8 0.31
26 18 0.69
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14683224 original size:344 final size:344
Alignment explanation
Indices: 14682528--14683299 Score: 821
Period size: 344 Copynumber: 2.2 Consensus size: 344
14682518 ATCCGGTTAG
** * * * *
14682528 GGCTTAGACCAGGAATGAACTCTGCATGCCTAACTCAACCCATGAAATGAGCGTG-ACGGCTCTC
1 GGCTTAGA-CAGGAAAAAACTCTGCATGCCTAAGTCAACCCATGAAACGAGCGTGCA-GACGCTC
* * *
14682592 AG-CAAGTCAGAGAGGCAGGAATACGTAAGCCGAGGATCAGCCCGATCCCCTTCTGCGTGCTGCT
64 AGCCGA-TCGGAGAGGCAGG-ATACGTAAGCCAAGGATCAGCCCGATCCCCTTCTGCGTGCTGCT
* * * *
14682656 ATCGATCCTGCTACCGGTTCGATCTTAAACTGGGAATGAACTCCATATGCTTAGACTGGGAATGA
127 ACCGATCCCGCTACCAGTCCGATCTTAAACTGGGAATGAACTCCATATGCTTAGACTGGGAATGA
* *
14682721 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCACTCAGTCAGCCAGAGAGGTAGA
192 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCACTCAGCCAGCCAGAGAGGCAGA
** * * * **
14682786 ATGTGCAAGTCAGGGATTCGGCCCGATCCCCATCTGCATGCTGTCGATCCCGCTACGAGTCGTGC
257 ATACGCAAGTCAGGGATTCGACCCGATCCCCATCTGCATGCTGCCGATCCCGCTACCAGTCCCGC
* ** * **
14682851 TGCGGGTCCCTTAGTCCGGTTGA
322 TACGCATCCCTCAGTCCGACTGA
* *
14682874 GGCTTAGATC-GAGAAAAAACTCTGCATACCTAAGTCAACCCATGAAACGAGCGTGCAGACGCTT
1 GGCTTAGA-CAG-GAAAAAACTCTGCATGCCTAAGTCAACCCATGAAACGAGCGTGCAGACGCTC
* * *
14682938 AGCCGATCGGAGAGGCAGG-TGCGTAAGCCAAGGAT-AGGCCTGGTCCACC-TCTGCGTGCTGCT
64 AGCCGATCGGAGAGGCAGGATACGTAAGCCAAGGATCA-GCCCGATCC-CCTTCTGCGTGCTGCT
* * *
14683000 ACCGAATCCCGCTGCCAGTCCGATCTTAGACT-GGAATGAACTCCGTATGCTTAGACTGGGAATG
127 ACCG-ATCCCGCTACCAGTCCGATCTTAAACTGGGAATGAACTCCATATGCTTAGACTGGGAATG
* * * *
14683064 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCATTGAGCC-GATCAGAGAGGCA
191 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCACTCAGCCAG-CCAGAGAGGCA
* * * * *
14683128 TAATACGTAAG-CTAGGGA-TCGACCCGGTCCCCCTCTGCTTGCTGCCGATCCCGCTACCAGTCC
255 GAATACGCAAGTC-AGGGATTCGACCCGATCCCCATCTGCATGCTGCCGATCCCGCTACCAGTCC
* * *
14683191 CGCTAC-CATAACCCTCGGTTCGACTGG
319 CGCTACGCAT--CCCTCAGTCCGACTGA
** * * * * *
14683218 GGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTAC-GAATGCTC
1 GGCTTAGACA-GGAAAAAACTCTGCATGCCTAAGTCAACCCATGAAACGAGCGTGCAG-ACGCTC
*
14683282 AACCGATCGGAGAGGCAG
64 AGCCGATCGGAGAGGCAG
14683300 AATGCTTAAG
Statistics
Matches: 354, Mismatches: 59, Indels: 28
0.80 0.13 0.06
Matches are distributed among these distances:
342 1 0.00
343 47 0.13
344 212 0.60
345 26 0.07
346 65 0.18
347 3 0.01
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.20
Consensus pattern (344 bp):
GGCTTAGACAGGAAAAAACTCTGCATGCCTAAGTCAACCCATGAAACGAGCGTGCAGACGCTCAG
CCGATCGGAGAGGCAGGATACGTAAGCCAAGGATCAGCCCGATCCCCTTCTGCGTGCTGCTACCG
ATCCCGCTACCAGTCCGATCTTAAACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTC
CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCACTCAGCCAGCCAGAGAGGCAGAATAC
GCAAGTCAGGGATTCGACCCGATCCCCATCTGCATGCTGCCGATCCCGCTACCAGTCCCGCTACG
CATCCCTCAGTCCGACTGA
Found at i:14684447 original size:26 final size:26
Alignment explanation
Indices: 14684408--14684460 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14684398 TCGGTCTGAT
* *
14684408 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACCGAGAATGAACTCCGTATG
14684434 CTTAGACCGAGAATGAACTCCGTATG
1 CTTAGACCGAGAATGAACTCCGTATG
14684460 C
1 C
14684461 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACCGAGAATGAACTCCGTATG
Found at i:14686603 original size:26 final size:26
Alignment explanation
Indices: 14686552--14686604 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14686542 CCGGTCTGAT
* *
14686552 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14686578 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
14686604 C
1 C
14686605 CTAAGTCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14687985 original size:26 final size:25
Alignment explanation
Indices: 14687943--14687994 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
14687933 CCAGTCTGAT
*
14687943 CTTAGACTGGAATGAACTCCGTATG
1 CTTAGACTAGAATGAACTCCGTATG
14687968 CTTAGACTAAGAATGAACTCCGTATG
1 CTTAGACT-AGAATGAACTCCGTATG
14687994 C
1 C
14687995 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (25 bp):
CTTAGACTAGAATGAACTCCGTATG
Found at i:14689403 original size:25 final size:26
Alignment explanation
Indices: 14689375--14689426 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14689365 CCGGTCTGAT
* *
14689375 CTTAGA-CTGGAATGAACTCTGTATG
1 CTTAGACCGGGAATGAACTCCGTATG
14689400 CTTAGACCGGGAATGAACTCCGTATG
1 CTTAGACCGGGAATGAACTCCGTATG
14689426 C
1 C
14689427 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACCGGGAATGAACTCCGTATG
Found at i:14694553 original size:84 final size:84
Alignment explanation
Indices: 14694403--14694558 Score: 233
Period size: 84 Copynumber: 1.9 Consensus size: 84
14694393 GCAGTAGTAT
*
14694403 CAGCCGCCCGCACGCATGATTGACACCTAACATCATGCTAGTCCCGCAAGGGGACTTAGGTAGAC
1 CAGCCACCCGCACGCATGATTGACACCTAACATCATGCTAGTCCCGCAAGGGGACTTAGGTAGAC
14694468 TGCCCCAACTGTAGCACAC
66 TGCCCCAACTGTAGCACAC
* * * * * *
14694487 CAGCCACCCGCACGCATGGTTGACACC-AACCATCTTGCTAGTCTCGTAAGGGGACTTGGGTGGA
1 CAGCCACCCGCACGCATGATTGACACCTAA-CATCATGCTAGTCCCGCAAGGGGACTTAGGTAGA
14694551 CTGCCCCA
65 CTGCCCCA
14694559 GCAGCAGCAC
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
83 2 0.03
84 62 0.97
ACGTcount: A:0.24, C:0.34, G:0.24, T:0.18
Consensus pattern (84 bp):
CAGCCACCCGCACGCATGATTGACACCTAACATCATGCTAGTCCCGCAAGGGGACTTAGGTAGAC
TGCCCCAACTGTAGCACAC
Found at i:14698996 original size:26 final size:26
Alignment explanation
Indices: 14698967--14699019 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14698957 CCTGTCCGAT
14698967 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14698993 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14699019 C
1 C
14699020 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14701238 original size:171 final size:171
Alignment explanation
Indices: 14700909--14701227 Score: 390
Period size: 171 Copynumber: 1.9 Consensus size: 171
14700899 AACTCCATAT
** * * * * * *
14700909 GCTTAGACTGGGAATGAACTTTGTATGCCTAAGTCAACCCATTAAATGAGCGTGCGGGCGCTGAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCACTCAA
* * * * *
14700974 TCGGTCAGAAAGGCATAATGCACAAGCCAGGGATCGGCCCGATCCCCCTCTGGGTGCTACCGATC
66 CCGGTCAGAAAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCCCCTCTGCGTGCTACCAATC
* * * *
14701039 CCGCTGTCGGTCCCGCTGCCACAACCCTCGATCCGACTGGG
131 CCGCTGCCGATCCCACTACCACAACCCTCGATCCGACTGGG
14701080 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCACTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCACTCA
* * * **
14701144 ACCGGTC-GAAGAGGCAGAATGCGCAAGTCAGGGATCGACCCGGTCCCCCTCTGCGTGCTGTCAA
65 ACCGGTCAGAA-AGGCAGAATGCACAAGCCAGGGATCGACCCGATCCCCCTCTGCGTGCTACCAA
* *
14701208 TCCTGCTGCCGATCCTACTA
129 TCCCGCTGCCGATCCCACTA
14701228 TCGTAACCCT
Statistics
Matches: 122, Mismatches: 24, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
170 3 0.02
171 118 0.97
172 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (171 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCACTCAA
CCGGTCAGAAAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCCCCTCTGCGTGCTACCAATC
CCGCTGCCGATCCCACTACCACAACCCTCGATCCGACTGGG
Found at i:14701452 original size:197 final size:197
Alignment explanation
Indices: 14701080--14701466 Score: 440
Period size: 197 Copynumber: 2.0 Consensus size: 197
14701070 TCCGACTGGG
*
14701080 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCACTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCACTCAA
** * * * *
14701145 CCGGTCGAAGAGGCAGAATGCGCAAGTCAGGGATCGACCCGGTCCCCCTCTGCGTGCTGTCAATC
66 CCGACCAAAGAGGCAGAATGCGCAAGTCAGGGATCGACCCGATCCCCCTATGCATGCTGTCAATC
* * *
14701210 CTGCTGCCGATCCTACTATCGTAACCCTCATTCTAGTCTGATCTTAGACTGGGAATGAACGAGAC
131 CCGCTGCCGATCCTACTATCGTAACCCTCATTCCAGTCCGATCTTAGACTGGGAATGAACGAGAC
14701275 TT
196 TT
* * * * * *
14701277 GCTTAGAC-TGGGGATGAACTCCGTATGCTTAAGTCAACCTATGAAACGAGCGTGCGGGCGCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCACTCA
* * * * *
14701341 ACCGACCAAAGGGGTAGAATGTGCAAG-CTGGGGATC-AGCCCGATCCCCCTATGCATGCTGTCG
65 ACCGACCAAAGAGGCAGAATGCGCAAGTC-AGGGATCGA-CCCGATCCCCCTATGCATGCTGTCA
* * * * * ** * *
14701404 ATCCCGTTGCGGGTCCTGCTATCGTGAGTCTCGA-TCCGGTCCGATCTTAGATTGGGAATGAAC
128 ATCCCGCTGCCGATCCTACTATCGTAACCCTC-ATTCCAGTCCGATCTTAGACTGGGAATGAAC
14701467 TCTGTATGCC
Statistics
Matches: 156, Mismatches: 30, Indels: 8
0.80 0.15 0.04
Matches are distributed among these distances:
196 3 0.02
197 152 0.97
198 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (197 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCACTCAA
CCGACCAAAGAGGCAGAATGCGCAAGTCAGGGATCGACCCGATCCCCCTATGCATGCTGTCAATC
CCGCTGCCGATCCTACTATCGTAACCCTCATTCCAGTCCGATCTTAGACTGGGAATGAACGAGAC
TT
Found at i:14703350 original size:26 final size:26
Alignment explanation
Indices: 14703321--14703373 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14703311 CCGGTCCGAT
*
14703321 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14703347 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14703373 C
1 C
14703374 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14704764 original size:26 final size:26
Alignment explanation
Indices: 14704728--14704780 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14704718 GTGGTCTGAA
* * *
14704728 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
14704754 CTTAGACTGGGAATGAAATCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
14704780 C
1 C
14704781 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:14705081 original size:171 final size:171
Alignment explanation
Indices: 14704763--14705086 Score: 407
Period size: 171 Copynumber: 1.9 Consensus size: 171
14704753 GCTTAGACTG
* * * *
14704763 GGAATGAAATCCGTATGCCTAAGTCAACCCACGAAACGAGTGTACGGGCCCTGAGCCGATCGGAG
1 GGAATGAAATCCGTATGCCTAAGCCAACCCACGAAACGAGTGTACGGGCCCTCAACCGACCGGAG
* * * * *
14704828 AGGCATAATGCGCAAGCCGAGGATCGGCCCGATCCCCTTCTGCGTGCTGTCGATCCTGCTGCCGA
66 AGGCAGAATGCACAAGCCGAGGATCAGCCCGATCCCCTTCTACATGCTGTCGATCCTGCTGCCGA
*
14704893 TCCCGCTGCCACAACCCTTGGTCCGACTGGGGCTTAGATAT
131 TCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGATAT
* ** **
14704934 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGTGGGTGCTCAACCGACCGGAG
1 GGAATGAAATCCGTATGCCTAAGCCAACCCACGAAACGAGTGTACGGGCCCTCAACCGACCGGAG
* * * * * *
14704999 AGGCAGAATGCACAAGTCGGGGATCAGTCCGGT-CCCTTCCTACATGCTGTCGATCTTGCTGCTG
66 AGGCAGAATGCACAAGCCGAGGATCAGCCCGATCCCCTT-CTACATGCTGTCGATCCTGCTGCCG
* * * *
14705063 GTCCTGCTGTCGCAACCCTCGGTC
130 ATCCCGCTGCCACAACCCTCGGTC
14705087 TGGTCTGATC
Statistics
Matches: 127, Mismatches: 25, Indels: 2
0.82 0.16 0.01
Matches are distributed among these distances:
170 5 0.04
171 122 0.96
ACGTcount: A:0.21, C:0.31, G:0.28, T:0.20
Consensus pattern (171 bp):
GGAATGAAATCCGTATGCCTAAGCCAACCCACGAAACGAGTGTACGGGCCCTCAACCGACCGGAG
AGGCAGAATGCACAAGCCGAGGATCAGCCCGATCCCCTTCTACATGCTGTCGATCCTGCTGCCGA
TCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGATAT
Found at i:14705259 original size:197 final size:197
Alignment explanation
Indices: 14704937--14705300 Score: 507
Period size: 197 Copynumber: 1.8 Consensus size: 197
14704927 TAGATATGGA
** * *
14704937 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGTGGGTGCTCAACCGACCGGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCCTGCGGGTGCTCAACCGACCAGAGAGG
* * * * * *
14705002 CAGAATGCACAAGTCGGGGATCAGTCCGGTCCCTTCCTACATGCTGTCGATCTTGCTGCTGGTCC
66 CAGAATGCACAAGCCGGGGACCAGTCCGGTCCCCTCCTACATGCTGCCGATCTCGCTGCTGGCCC
* * **
14705067 TGCTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTACGAATTAATGAGACTTGCTTAGACTGG
131 TGCTATCGCAACCCTCGATCCAGTCTGATCTTAGACTACGAATTAATGAGACTTGCTTAGACTGG
14705132 GG
196 GG
** *
14705134 ATGAACTTTGTATGCCTAAGTCAACCCACGAAACGAGCCTGCGGGTGCTCAACCGACCAGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCCTGCGGGTGCTCAACCGACCAGAGAGG
** * *
14705199 CAGAATGTGCAAGCCGGGGACCAG-CCTGGTCCCC-CTCTACGTGTTGCCGATCTCGCTGCTGGC
66 CAGAATGCACAAGCCGGGGACCAGTCC-GGTCCCCTC-CTACATGCTGCCGATCTCGCTGCTGGC
14705262 CCTGCTATCGCAACCCTCGATCCAGTCTGATCTTAGACT
129 CCTGCTATCGCAACCCTCGATCCAGTCTGATCTTAGACT
14705301 GGGAATGAAC
Statistics
Matches: 144, Mismatches: 21, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
196 3 0.02
197 141 0.98
ACGTcount: A:0.22, C:0.29, G:0.26, T:0.23
Consensus pattern (197 bp):
ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCCTGCGGGTGCTCAACCGACCAGAGAGG
CAGAATGCACAAGCCGGGGACCAGTCCGGTCCCCTCCTACATGCTGCCGATCTCGCTGCTGGCCC
TGCTATCGCAACCCTCGATCCAGTCTGATCTTAGACTACGAATTAATGAGACTTGCTTAGACTGG
GG
Found at i:14706187 original size:26 final size:26
Alignment explanation
Indices: 14706151--14706203 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14706141 CCGATCCGAT
14706151 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
14706177 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14706203 C
1 C
14706204 CTATGTGAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14707601 original size:26 final size:26
Alignment explanation
Indices: 14707565--14707618 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
14707555 AGTCTGATCT
*
14707565 TAGATTGGGAATGAACTCCATATGCC
1 TAGACTGGGAATGAACTCCATATGCC
14707591 TAGACTGGGAATGAACTCCATATGCC
1 TAGACTGGGAATGAACTCCATATGCC
14707617 TA
1 TA
14707619 ACTCAACCCA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.26
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCC
Found at i:14707944 original size:26 final size:26
Alignment explanation
Indices: 14707908--14707960 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14707898 CCGGTCTGAT
*
14707908 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
14707934 CTTAGACTGGGAATGAACACCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
14707960 C
1 C
14707961 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGTATG
Found at i:14707982 original size:174 final size:173
Alignment explanation
Indices: 14707414--14708048 Score: 547
Period size: 174 Copynumber: 3.7 Consensus size: 173
14707404 TCCGATTGGG
* *
14707414 GCTTAGA-TCGGGAATGAACTCCGCATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
1 GCTTAGACT-GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCA
* * * * * *
14707478 ACCGATCGAAGAGGCAGGATTCGCAAGCCGAGGATCGACCCTG-TCCCCCTCTACGTGCTGCGGC
65 GCCGATCGGAGAGGCAGAATGCGCAAGTCGAGGATCGACCC-GATCCCCCTCTACGTG-TGCTGC
* * * * *
14707542 TGATCCCGTTGTCAGTCTGATCTTAGATTGGGAATGAACTCCATAT
128 TGATCCCGCTGCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
* * * * * *
14707588 GCCTAGACTGGGAATGAACTCCATATGCCTAACTCAACCCACGAAACGAGTGTACGGGCACTGAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * *** *
14707653 CCAATAGGAGAGGCATAATGCGCAAGTCGGGGATCGGTTCGATCCCCCTCT--GTGTGCTGTTGA
66 CCGATCGGAGAGGCAGAATGCGCAAGTCGAGGATCGACCCGATCCCCCTCTACGTGTGCTGCTGA
* * * * * * ** * **
14707716 TCCCGCTACCGGTCCCGCTAC-CACAACCCTCGGTCTG-GCT--G-GG
131 TCCCGCTGCCGGT-CTGAT-CTTA-GA--CTGGGAATGAACTCCGTAT
* * * * *
14707759 GCATAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCA
* * * * * *
14707823 GCC-AGTCGGAGAGGCAGGATGCACAAGTTGAGGATCGGCCCGATCCCCCTCTACATGTTGCTAC
65 GCCGA-TCGGAGAGGCAGAATGCGCAAGTCGAGGATCGACCCGATCCCCCTCTACGTG-TGCTGC
** *
14707887 CAATCCCACTGCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
128 TGATCCCGCTGCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
* ** * *
14707933 GCTTAGACTGGGAATGAACACCGTATGCCTAAGTCAACCCATTAAACGAGCATGCGGGCACTGAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAG
* *
14707998 CCGATCGGAGAGGCATAATGCGCAAGTC-AGGGATCGACCCGGTCCCCCTCT
66 CCGATCGGAGAGGCAGAATGCGCAAGTCGA-GGATCGACCCGATCCCCCTCT
14708049 GCCGATCCCG
Statistics
Matches: 354, Mismatches: 87, Indels: 40
0.74 0.18 0.08
Matches are distributed among these distances:
170 7 0.02
171 112 0.32
172 10 0.03
173 12 0.03
174 206 0.58
175 7 0.02
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (173 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAG
CCGATCGGAGAGGCAGAATGCGCAAGTCGAGGATCGACCCGATCCCCCTCTACGTGTGCTGCTGA
TCCCGCTGCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:14708033 original size:345 final size:337
Alignment explanation
Indices: 14707424--14708205 Score: 985
Period size: 345 Copynumber: 2.3 Consensus size: 337
14707414 GCTTAGATCG
* * *
14707424 GGAATGAACTCCGCATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGATCGAAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCG-TCGGAG
* ** * * * ** **
14707489 AGGCAGGATTCGCAAGCCGAGGATCGACCCTG-TCCCCCTCTACGTGCTGCGGCTGATCCCGTTG
65 AGGCAGGATGCGCAAGTTGAGGATCGGCCC-GATCCCCCTCTACATGCTGCGACCAATCCCACTG
* * *
14707553 TCAGTCTGATCTTAGATTGGGAATGAACTCCATATGCCTAGACTGGGAATGAACTCCATATGCCT
129 CCAGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAGACTGGGAATGAACACCATATGCCT
** *
14707618 AACTCAACCCACGAAACGAGTGTACGGGCACTGAGCCAATAGGAGAGGCATAATGCGCAAGTCGG
194 AACTCAACCCACGAAACGAGCATACGGGCACTGAGCCAATAGGAGAGGCATAATGCGCAAGTCAG
*** * *
14707683 GGATCGGTTCGATCCCCCTCTGTGTGCTGTTGATCCCGCTACCGGTCCCGCTACCACAACCCTCG
259 GGATCGACCCGATCCCCCTC----TGC---CGATCCCGCTACCGGTCCCACTACCACAACCCTCG
14707748 G-TCTGGCTGGGGCATAGACAT
317 GTTC-GGCTGGGGCATAGACAT
* * *
14707769 GGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCAGTCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACC-GTCGGAG
* * *
14707834 AGGCAGGATGCACAAGTTGAGGATCGGCCCGATCCCCCTCTACATGTTGCTACCAATCCCACTGC
65 AGGCAGGATGCGCAAGTTGAGGATCGGCCCGATCCCCCTCTACATGCTGCGACCAATCCCACTGC
* * * *
14707899 CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACACCGTATGCCTA
130 CAGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAGACTGGGAATGAACACCATATGCCTA
* ** * * *
14707964 AGTCAACCCATTAAACGAGCATGCGGGCACTGAGCCGATCGGAGAGGCATAATGCGCAAGTCAGG
195 ACTCAACCCACGAAACGAGCATACGGGCACTGAGCCAATAGGAGAGGCATAATGCGCAAGTCAGG
* *
14708029 GATCGACCCGGTCCCCCTCTGCCGATCCCGCTGCCGGTCCCACTACCACAACCCTCGGTTCGGCT
260 GATCGACCCGATCCCCCTCTGCCGATCCCGCTACCGGTCCCACTACCACAACCCTCGGTTCGGCT
*
14708094 GGGGCTTAGACAT
325 GGGGCATAGACAT
* * * *
14708107 GGAATGAACTCCGTATGCCTAAGCCAAGCCACGAAACGAGCGTGCGGGTGCTTAACCGGTCGGAC
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACC-GTCGGAG
* *
14708172 AGGCAGAATGTGCAAGTT-AGGGATCGGCCCGATC
65 AGGCAGGATGCGCAAGTTGA-GGATCGGCCCGATC
14708206 TTGGACTGGG
Statistics
Matches: 379, Mismatches: 54, Indels: 15
0.85 0.12 0.03
Matches are distributed among these distances:
337 1 0.00
338 135 0.36
339 2 0.01
341 3 0.01
344 1 0.00
345 236 0.62
346 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (337 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGTCGGAGA
GGCAGGATGCGCAAGTTGAGGATCGGCCCGATCCCCCTCTACATGCTGCGACCAATCCCACTGCC
AGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAGACTGGGAATGAACACCATATGCCTAA
CTCAACCCACGAAACGAGCATACGGGCACTGAGCCAATAGGAGAGGCATAATGCGCAAGTCAGGG
ATCGACCCGATCCCCCTCTGCCGATCCCGCTACCGGTCCCACTACCACAACCCTCGGTTCGGCTG
GGGCATAGACAT
Found at i:14710538 original size:26 final size:26
Alignment explanation
Indices: 14710509--14710561 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14710499 TTGGTCCGAT
*
14710509 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14710535 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
14710561 C
1 C
14710562 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14711965 original size:26 final size:26
Alignment explanation
Indices: 14711929--14712001 Score: 146
Period size: 26 Copynumber: 2.8 Consensus size: 26
14711919 ATCGGTACGA
14711929 TCTTAGACTGGGAATGAACTCCATAT
1 TCTTAGACTGGGAATGAACTCCATAT
14711955 TCTTAGACTGGGAATGAACTCCATAT
1 TCTTAGACTGGGAATGAACTCCATAT
14711981 TCTTAGACTGGGAATGAACTC
1 TCTTAGACTGGGAATGAACTC
14712002 TGTATGCCTA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
TCTTAGACTGGGAATGAACTCCATAT
Found at i:14714298 original size:24 final size:24
Alignment explanation
Indices: 14714262--14714308 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
14714252 CCCCCCTGCG
14714262 TGCTGCGAATCCTGCTGCTGGTCA
1 TGCTGCGAATCCTGCTGCTGGTCA
* *
14714286 TGCTGTGACTCCTGCTGCTGGTC
1 TGCTGCGAATCCTGCTGCTGGTC
14714309 CTACTGTCGC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.09, C:0.30, G:0.30, T:0.32
Consensus pattern (24 bp):
TGCTGCGAATCCTGCTGCTGGTCA
Found at i:14714737 original size:26 final size:26
Alignment explanation
Indices: 14714708--14714760 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14714698 TCGATCCGAT
14714708 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
14714734 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14714760 C
1 C
14714761 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14718860 original size:25 final size:26
Alignment explanation
Indices: 14718822--14718873 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
14718812 CCAGTGTGAT
**
14718822 CTTAGACTGGGAATGAACTCCG-ATG
1 CTTAGACTAAGAATGAACTCCGTATG
14718847 CTTAGACTAAGAATGAACTCCGTATG
1 CTTAGACTAAGAATGAACTCCGTATG
14718873 C
1 C
14718874 ATAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 20 0.83
26 4 0.17
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTAAGAATGAACTCCGTATG
Found at i:14719444 original size:26 final size:26
Alignment explanation
Indices: 14719408--14719458 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
14719398 GTGGTCTGAT
14719408 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14719434 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
14719459 ACCTAAGTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14722680 original size:26 final size:26
Alignment explanation
Indices: 14722644--14722696 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14722634 GTTGACTTAG
14722644 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
14722670 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
14722696 G
1 G
14722697 ATCGGATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:14723107 original size:12 final size:12
Alignment explanation
Indices: 14723090--14723133 Score: 54
Period size: 12 Copynumber: 3.7 Consensus size: 12
14723080 AGGGTTGCGA
14723090 CAGCAGGACCAG
1 CAGCAGGACCAG
*
14723102 CAGCAGGAGTC-G
1 CAGCAGGA-CCAG
*
14723114 CAGCATGACCAG
1 CAGCAGGACCAG
14723126 CAGCAGGA
1 CAGCAGGA
14723134 TTCACAGTAC
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
11 1 0.04
12 24 0.92
13 1 0.04
ACGTcount: A:0.32, C:0.30, G:0.34, T:0.05
Consensus pattern (12 bp):
CAGCAGGACCAG
Found at i:14723299 original size:12 final size:12
Alignment explanation
Indices: 14723282--14723312 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
14723272 CGAGGGTTGT
14723282 GGTAGCAGGATC
1 GGTAGCAGGATC
*
14723294 GGTAGCTGGATC
1 GGTAGCAGGATC
14723306 GGTAGCA
1 GGTAGCA
14723313 TGCAGAAAGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.23, C:0.16, G:0.42, T:0.19
Consensus pattern (12 bp):
GGTAGCAGGATC
Found at i:14726833 original size:26 final size:26
Alignment explanation
Indices: 14726803--14726855 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14726793 GTTGACTTAG
*
14726803 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14726829 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14726855 G
1 G
14726856 ATCAGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14729419 original size:26 final size:26
Alignment explanation
Indices: 14729389--14729441 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14729379 GTTGACTTAG
*
14729389 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
14729415 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
14729441 G
1 G
14729442 ATCAGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:14729538 original size:174 final size:173
Alignment explanation
Indices: 14729304--14729926 Score: 537
Period size: 174 Copynumber: 3.6 Consensus size: 173
14729294 GACCGGCAAC
* * * * * *
14729304 GGGGGATCGGGTCGATCCTCGACTTACGCA-CTATGCCTCTCCGATCGGCTCAGTGCCCGCATGC
1 GGGGGACCGGGCCGATCCTCGACTTGCGCATC-ATGCCTCTCCGATTGGCTCAGCGCCCGCACGC
14729368 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCC
65 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCC
* * * *
14729433 CAGTCTAAGATCAGACCGACAGTGGGATTGGTAGCAACATGTAAA
130 CAGTCTAAGATCAGACCGACAGCGGGATTAG-AGCAGCACGTAAA
* * * *
14729478 GGGGGACCGGGCCGATCCTTGACTTGCGCATCCTGCCTCTCCGACTGGCTGAGCGCCCGCACGCT
1 GGGGGACCGGGCCGATCCTCGACTTGCGCATCATGCCTCTCCGATTGGCTCAGCGCCCGCACGCT
* * * ** * **
14729543 CGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATT-CCATGTCTATGC---CCCAG-CCAGACC
66 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGCATACAGAGTTCATTCC
* ** * * ** *
14729603 GAGGGT-TGTGGTAGCGGGACCGGTAGCGGGA-TCGA-CAGCACGTAGAA
130 CA--GTCT-AAG-ATC-AGACCGACAGCGGGATTAGAGCAGCACGTA-AA
* * * ** * *
14729650 -GGGGACCGGGCCGATCCCCGACTTGCGCATTATGCATCTCCGATTGGCTCAGTACCCGTACACT
1 GGGGGACCGGGCCGATCCTCGACTTGCGCATCATGCCTCTCCGATTGGCTCAGCGCCCGCACGCT
** * * **
14729714 CGTTTTTTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAGGCATATGGAGTTCATTCCC
66 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCC
* * * * *
14729779 AATCTAAGATCAGACCGACAACGGGATCAGCCGCAGCACGTAGA
131 AGTCTAAGATCAGACCGACAGCGGGATTAG-AGCAGCACGTAAA
* * * * * * * * *
14729823 GGGGGACTGGGTCGATCTTCGGCTTGCGAATCCTGCCTTTCCGATTGGTTTAAGCGCCCGCACGC
1 GGGGGACCGGGCCGATCCTCGACTTGCGCATCATGCCTCTCCGATTGG-CTCAGCGCCCGCACGC
* * *
14729888 TCGTTTCGTGGGTTGACTTACGCATGCGGAGTTCATTCC
65 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
14729927 TGATCTAAGC
Statistics
Matches: 344, Mismatches: 86, Indels: 37
0.74 0.18 0.08
Matches are distributed among these distances:
170 5 0.01
171 113 0.33
172 12 0.03
173 10 0.03
174 154 0.45
175 50 0.15
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.25
Consensus pattern (173 bp):
GGGGGACCGGGCCGATCCTCGACTTGCGCATCATGCCTCTCCGATTGGCTCAGCGCCCGCACGCT
CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCC
AGTCTAAGATCAGACCGACAGCGGGATTAGAGCAGCACGTAAA
Found at i:14729767 original size:26 final size:26
Alignment explanation
Indices: 14729731--14729784 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
14729721 TGGGTTGACT
*
14729731 TAGGCATATGGAGTTCATTCCCAGTC
1 TAGGCATATGGAGTTCATTCCCAATC
14729757 TAGGCATATGGAGTTCATTCCCAATC
1 TAGGCATATGGAGTTCATTCCCAATC
14729783 TA
1 TA
14729785 AGATCAGACC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.31
Consensus pattern (26 bp):
TAGGCATATGGAGTTCATTCCCAATC
Found at i:14729974 original size:345 final size:331
Alignment explanation
Indices: 14729159--14729954 Score: 906
Period size: 345 Copynumber: 2.4 Consensus size: 331
14729149 AGTCTAAGAT
* * * * *
14729159 CGGGCCGATCCCTGACTTGC-ACATTCTGCCTGTCCGATCGGTTAAGCACCCGCACGCTCGTTTC
1 CGGGCCGATCCTTGACTTGCGA-ATCCTGCCTCTCCGATTGGTTAAGCGCCCGCACGCTCGTTTC
14729223 GTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGA-GG-GTT-G
65 GTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGAGTTGG
* * * * *
14729285 -T-GGTAGCGGGACCGGCAACGGGGGATCGGGTCGATCCTCGACTTACGCACTATGCCTCTCCGA
130 ATCGGTAGCGGGACCGACAACGGGGGACCGGGCCGATCCCCGACTTACGCACTATGCATCTCCGA
* **
14729348 TCGGCTCAGTGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
195 TCGGCTCAGTACCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* ** ** * *
14729413 AAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGACAGTGGGATTGGTAGCAACATGTAAA
260 AAGCATACAGAGTTCATTCCCAATCTAAGATCAGACCGACAACGGGATCAGCAGCAACACGTAAA
14729478 GGGGGAC
325 GGGGGAC
* * * * *
14729485 CGGGCCGATCCTTGACTTGCGCATCCTGCCTCTCCGACTGGCTGAGCGCCCGCACGCTCGTTTCA
1 CGGGCCGATCCTTGACTTGCGAATCCTGCCTCTCCGATTGGTTAAGCGCCCGCACGCTCGTTTCG
* * * *
14729550 TGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTATGCCCCAGCCAGACCGAGGGTTGTGGT
66 TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGG-AGT--T
* * * *
14729615 AGCGGGACCGGTAGCGGGATCGACAGCACGTAGAAGGGGACCGGGCCGATCCCCGACTTGCGCAT
128 ----GGATCGGTAGCGGGACCGACA--AC---G--GGGGACCGGGCCGATCCCCGACTTACGCAC
* * ** *
14729680 TATGCATCTCCGATTGGCTCAGTACCCGTACACTCGTTTTTTGGGTTGACTTAGGCATATGGAGT
182 TATGCATCTCCGATCGGCTCAGTACCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGT
* **
14729745 TCATTCCCAGTCTAGGCATATGGAGTTCATTCCCAATCTAAGATCAGACCGACAACGGGATCAGC
247 TCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAGACCGACAACGGGATCAGC
* * *
14729810 CGCAGCACGTAGAGGGGGAC
312 AGCAACACGTAAAGGGGGAC
* * * *
14729830 TGGGTCGAT-CTTCGGCTTGCGAATCCTGCCTTTCCGATTGGTTTAAGCGCCCGCACGCTCGTTT
1 CGGGCCGATCCTT-GACTTGCGAATCCTGCCTCTCCGATTGG-TTAAGCGCCCGCACGCTCGTTT
* * * *
14729894 CGTGGGTTGACTTACGCATGCGGAGTTCATTCC-TGATCTAAGCCCCAACCGGACCGAGGGA
64 CGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATG-TCTAAGCCCCAGCCGGACCGAGGGA
14729955 CCCACAGTTG
Statistics
Matches: 387, Mismatches: 60, Indels: 27
0.82 0.13 0.06
Matches are distributed among these distances:
326 106 0.27
327 2 0.01
329 2 0.01
331 1 0.00
336 1 0.00
338 14 0.04
340 2 0.01
343 1 0.00
344 3 0.01
345 186 0.48
346 69 0.18
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (331 bp):
CGGGCCGATCCTTGACTTGCGAATCCTGCCTCTCCGATTGGTTAAGCGCCCGCACGCTCGTTTCG
TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGAGTTGGA
TCGGTAGCGGGACCGACAACGGGGGACCGGGCCGATCCCCGACTTACGCACTATGCATCTCCGAT
CGGCTCAGTACCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
AGCATACAGAGTTCATTCCCAATCTAAGATCAGACCGACAACGGGATCAGCAGCAACACGTAAAG
GGGGAC
Found at i:14731177 original size:26 final size:26
Alignment explanation
Indices: 14731147--14731199 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14731137 GTTCAAATAG
*
14731147 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
14731173 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
14731199 G
1 G
14731200 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:14732385 original size:197 final size:197
Alignment explanation
Indices: 14732050--14732413 Score: 480
Period size: 197 Copynumber: 1.8 Consensus size: 197
14732040 GTTCATTCCC
** * ** * * **
14732050 AGTCTAAGATCAGACTGGATCGAGGGTTGTGGTAGCAGGACCCGCAGCGAGATCGGTAACACGCA
1 AGTCTAAGATCAGACCAGATCGAGGGTTGCGACAGCAGGACCAGCAGCAAGATCGACAACACGCA
* * ** **
14732115 GAGGGGGACCAGGCTGGTCCCCGACTTGCACATTCTGCCTCTCTGGTCGGTTGAGCACCTGCAGG
66 GAGGGGGACCAGGCTGATCCCCGACTTACACATTCTGCCTCTCTGGTCGGTTGAGCACCCACACA
*
14732180 CTCGTTTCGTGGGTTGACTTAGGGATACGAAGTTCATCCCCAGTCTAAGCAAGTCTCATTAATTC
131 CTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCAAGTCTCATTAATTC
14732245 GT
196 GT
* * *
14732247 AGTCTAAGATCAGACCAGATCGAGGGTTGCGACAGCAGGACCAGCAGCAAGATCGACAGCATGTA
1 AGTCTAAGATCAGACCAGATCGAGGGTTGCGACAGCAGGACCAGCAGCAAGATCGACAACACGCA
* * *
14732312 G-GGAGGGACCGGGCTGATCCTCGACTTACGCATTCTGCCTCT-TCGGTCGGTTGAGCACCCACA
66 GAGG-GGGACCAGGCTGATCCCCGACTTACACATTCTGCCTCTCT-GGTCGGTTGAGCACCCACA
* *
14732375 CACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
129 CACTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCAT
14732414 TCCATATCTA
Statistics
Matches: 141, Mismatches: 24, Indels: 4
0.83 0.14 0.02
Matches are distributed among these distances:
196 3 0.02
197 138 0.98
ACGTcount: A:0.22, C:0.25, G:0.30, T:0.23
Consensus pattern (197 bp):
AGTCTAAGATCAGACCAGATCGAGGGTTGCGACAGCAGGACCAGCAGCAAGATCGACAACACGCA
GAGGGGGACCAGGCTGATCCCCGACTTACACATTCTGCCTCTCTGGTCGGTTGAGCACCCACACA
CTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCAAGTCTCATTAATTC
GT
Found at i:14732599 original size:26 final size:26
Alignment explanation
Indices: 14732570--14732622 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14732560 GTTGACTTAG
* * *
14732570 GCATACGGATTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
14732596 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
14732622 G
1 G
14732623 TTCAGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:14736451 original size:26 final size:26
Alignment explanation
Indices: 14736421--14736473 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14736411 GTTGACTTAG
14736421 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
*** *
14736447 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
14736473 G
1 G
14736474 ATCGAACCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:14745542 original size:45 final size:45
Alignment explanation
Indices: 14745493--14745591 Score: 128
Period size: 45 Copynumber: 2.2 Consensus size: 45
14745483 GGGGCATGTG
* * *
14745493 CCCGCACCAAGGGCCAGCGCATGCCGATGGTGGTCGATGA-GACTA
1 CCCGCACCAAGGGCCAACGCATGCCGATGGTGGTCGA-GACAACCA
* **
14745538 CCCGCACCAAGGGCCAATGTGTGCCGATGGTGGTCGAGACAACCA
1 CCCGCACCAAGGGCCAACGCATGCCGATGGTGGTCGAGACAACCA
14745583 CCCGCACCA
1 CCCGCACCA
14745592 GATCGAGGCA
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
44 2 0.04
45 45 0.96
ACGTcount: A:0.23, C:0.34, G:0.30, T:0.12
Consensus pattern (45 bp):
CCCGCACCAAGGGCCAACGCATGCCGATGGTGGTCGAGACAACCA
Found at i:14745660 original size:45 final size:45
Alignment explanation
Indices: 14745605--14746144 Score: 436
Period size: 45 Copynumber: 12.0 Consensus size: 45
14745595 CGAGGCATGT
* * * *
14745605 GCCCACACCAAGGCCCAACATGTGCCGATGGTGTTAGAGGCAACC
1 GCCCGCACCAAGGGCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * * * * *
14745650 GCCTGCACCAA-GGCTCGGCATGTACCAATGGTGTTCGACGTAACC
1 GCCCGCACCAAGGGC-CAGCATGTGCCGATGGTGTTCGAGGCAACC
* * * * * * * * **
14745695 GCTCGTACCAGGGGCCATCTTCTGTCGATGGTGGTCGAGGCAAGA
1 GCCCGCACCAAGGGCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * *
14745740 GCCCGCACCAAGGGCCAGCTTGTGTCGATGGTGCTCGAGGCAACC
1 GCCCGCACCAAGGGCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * * * * *
14745785 GCCCACACCAAGGGCCATCTTCTGCCGATGGTGGTCGAGGCAATC
1 GCCCGCACCAAGGGCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * *
14745830 ACCCGCACCAAGGCCCAGCACGTGCCGATGGTGTTCGAGGCAACC
1 GCCCGCACCAAGGGCCAGCATGTGCCGATGGTGTTCGAGGCAACC
** * * *
14745875 GCCTACACTAGGGGCCAGCATGTGTCGATGGTGTTCGAGGCAACC
1 GCCCGCACCAAGGGCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * * * * * * * **
14745920 ACCCGCACTAGGGGCCATCTTCTGTCGATGGTGGTCGAGGCAAGA
1 GCCCGCACCAAGGGCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * * ** * *
14745965 GCCCGCACCAAGGGTCGGCTTGTGTTGATGGTGTTCGAGGTAATC
1 GCCCGCACCAAGGGCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * *
14746010 GCCCGCACTAA-GGCTCGGCATGTGCCGATGGTGGTCGAGGCAACC
1 GCCCGCACCAAGGGC-CAGCATGTGCCGATGGTGTTCGAGGCAACC
* * * * * *
14746055 GCCCGCACTACGGCCCAGCATGTGCCGATGGTGTTTGATGCAATC
1 GCCCGCACCAAGGGCCAGCATGTGCCGATGGTGTTCGAGGCAACC
* * * * *
14746100 GCCCGCACCAGGGGCCATCTTGTGCCGATGGTGATCAAGGCAACC
1 GCCCGCACCAAGGGCCAGCATGTGCCGATGGTGTTCGAGGCAACC
14746145 ATCCATCCTA
Statistics
Matches: 388, Mismatches: 103, Indels: 8
0.78 0.21 0.02
Matches are distributed among these distances:
44 4 0.01
45 379 0.98
46 5 0.01
ACGTcount: A:0.20, C:0.30, G:0.31, T:0.18
Consensus pattern (45 bp):
GCCCGCACCAAGGGCCAGCATGTGCCGATGGTGTTCGAGGCAACC
Found at i:14746160 original size:90 final size:88
Alignment explanation
Indices: 14745625--14746218 Score: 374
Period size: 90 Copynumber: 6.6 Consensus size: 88
14745615 AGGCCCAACA
* * * * * * * * *
14745625 TGTGCCGATGGTGTTAGAGGCAACCGCCTGCACCAA-GGCTCGGCATGTACCAATGGTGTTCGAC
1 TGTGCCGATGGTGTTCGAGGCAATCGCCCGCACCAAGGGC-CAGCTTGTGCCGATGGTGGTCGAG
* * *
14745689 GTAACCGCTCGTACC-AGGGGCCATCT
65 GCAACCGC-CAT-CCTA-GGGCCAGCT
* * * ** * *
14745715 TCTGTCGATGGTGGTCGAGGCAAGAGCCCGCACCAAGGGCCAGCTTGTGTCGATGGTGCTCGAGG
1 TGTGCCGATGGTGTTCGAGGCAATCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGG
* * *
14745780 CAACCGCCCACACCAAGGGCCATCT
66 CAACCG-CCA-TCCTAGGGCCAGCT
* * * * ** *
14745805 TCTGCCGATGGTGGTCGAGGCAATCACCCGCACCAAGGCCCAGCACGTGCCGATGGTGTTCGAGG
1 TGTGCCGATGGTGTTCGAGGCAATCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGG
*
14745870 CAACCGCC-TACACTAGGGGCCAGCA
66 CAACCGCCAT-C-CTA-GGGCCAGCT
* * * * * * * *
14745895 TGTGTCGATGGTGTTCGAGGCAACCACCCGCACTAGGGGCCATCTTCTGTCGATGGTGGTCGAGG
1 TGTGCCGATGGTGTTCGAGGCAATCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGG
* * *
14745960 CAAGAGCC-CGCA-CCAAGGGTCGGCT
66 C-A-A-CCGC-CATCCTAGGGCCAGCT
** * * * *
14745985 TGTGTTGATGGTGTTCGAGGTAATCGCCCGCACTAA-GGCTCGGCATGTGCCGATGGTGGTCGAG
1 TGTGCCGATGGTGTTCGAGGCAATCGCCCGCACCAAGGGC-CAGCTTGTGCCGATGGTGGTCGAG
** * *
14746049 GCAACCGCCCGCACTACGGCCCAGCA
65 GCAACCGCCATC-CTA-GGGCCAGCT
* * * * * *
14746075 TGTGCCGATGGTGTTTGATGCAATCGCCCGCACCAGGGGCCATCTTGTGCCGATGGTGATCAAGG
1 TGTGCCGATGGTGTTCGAGGCAATCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGG
*
14746140 CAACCATCCATCCTAGGGCCCAGCT
66 CAACC-GCCATCCTAGGG-CCAGCT
* * * ** * **
14746165 TATGCCGATTGTGGTCGAGGCAAGT-GCCCATACCAAAGAACAGCTTGTGCCGAT
1 TGTGCCGATGGTGTTCGAGGCAA-TCGCCCGCACCAAGGGCCAGCTTGTGCCGAT
14746219 TATGGTCAAT
Statistics
Matches: 391, Mismatches: 92, Indels: 42
0.74 0.18 0.08
Matches are distributed among these distances:
87 3 0.01
88 4 0.01
89 12 0.03
90 351 0.90
91 15 0.04
92 3 0.01
93 3 0.01
ACGTcount: A:0.20, C:0.29, G:0.31, T:0.19
Consensus pattern (88 bp):
TGTGCCGATGGTGTTCGAGGCAATCGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGG
CAACCGCCATCCTAGGGCCAGCT
Found at i:14747328 original size:197 final size:197
Alignment explanation
Indices: 14746966--14747339 Score: 445
Period size: 197 Copynumber: 1.9 Consensus size: 197
14746956 GGCATACGGA
* * * *
14746966 GTTCATTCCTAGTCTAAGATCAGATCGGATCGAGGGTTGCAATAGCAGGACTCGCAGCAGGATCG
1 GTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCAATAGCAGGACTCCCAGCAAGATCG
* * * * *
14747031 ACAGCACGCAGAGGGGGATCGGGCTGATCCTCGGCTTGCACATTTTGCCTCTCTGGTCGGCTGAG
66 ACAGCACGCAGAGGGGGATCGGGCTGATCCTCGACTTACACATTCTACCTCTCTGCTCGGCTGAG
* * *
14747096 CACCCGCACGCTCATTTCGTGAGTTGACATAGGCATACGGAGTTCATCCCCAGTCTAAACAAGTC
131 CACCCGCACACTCATTTCGTGAGTGGACATAGGCATACGAAGTTCATCCCCAGTCTAAACAAGTC
14747161 TC
196 TC
** *
14747163 GTTCATTCCCAGTCTAAGATCAGACCGGA-CTGAGGGTTGCGGTAGCAGGAC-CACCAGTAAGAT
1 GTTCATTCCCAGTCTAAGATCAGACCGGATC-GAGGGTTGCAATAGCAGGACTC-CCAGCAAGAT
* *
14747226 CGACAGCACGCA-AGGGGGGATCGAG-TCGATCC-CTGACTTACGCATTCTACCTCTCTAGCT-G
64 CGACAGCACGCAGA-GGGGGATCGGGCT-GATCCTC-GACTTACACATTCTACCTCTCT-GCTCG
* ** * * *
14747287 GTTGAGCACCCGCACACTCATTTTTTGGGTGGGCTTAGGCATACGAAGTTCAT
125 GCTGAGCACCCGCACACTCATTTCGTGAGTGGACATAGGCATACGAAGTTCAT
14747340 TCCATGTCTA
Statistics
Matches: 148, Mismatches: 23, Indels: 12
0.81 0.13 0.07
Matches are distributed among these distances:
196 5 0.03
197 141 0.95
198 2 0.01
ACGTcount: A:0.23, C:0.26, G:0.27, T:0.24
Consensus pattern (197 bp):
GTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCAATAGCAGGACTCCCAGCAAGATCG
ACAGCACGCAGAGGGGGATCGGGCTGATCCTCGACTTACACATTCTACCTCTCTGCTCGGCTGAG
CACCCGCACACTCATTTCGTGAGTGGACATAGGCATACGAAGTTCATCCCCAGTCTAAACAAGTC
TC
Found at i:14747514 original size:26 final size:26
Alignment explanation
Indices: 14747484--14747536 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14747474 GTTGACTTAG
*
14747484 GCATACGGAGTTCATTCCGAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
14747510 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
14747536 G
1 G
14747537 ATAGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:14749157 original size:26 final size:26
Alignment explanation
Indices: 14749128--14749180 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14749118 ATTGACTTAG
*
14749128 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
14749154 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
14749180 G
1 G
14749181 ATCAAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:14749641 original size:158 final size:158
Alignment explanation
Indices: 14749253--14749641 Score: 429
Period size: 158 Copynumber: 2.5 Consensus size: 158
14749243 CGTATCCTGT
* * * * ***
14749253 CTCTCCGATCGGTTGAGCGCCTGTATGCTCGTTTCGTGGGTTGACTTAGGCATGTGGAGTTCATT
1 CTCTCCGATCGGTTGAGCGCCCGCATACTCGTTTCATGGGTTGACTTAGGCATGCAAAGTTCATT
* * * ** * *
14749318 CCTGATCTAAGCCCCAATCGAATCGAGGGACCCACAGTGGGATCGACAGCACGCAGAGGGAGGCT
66 CCTGGTCTAAGCCCCAACCGAACCGAGGGACCCACAGCAGGATAGACAGCACGCAGAGGGAGGCC
* *
14749383 GGGCCGATCCTCGGCTTACGCATTTTGG
131 GAGCCGATCCTCAGCTTACGCATTTTGG
* * * * * *
14749411 CTCTCCGGTTGGCTGAGCGCCCACACGA-TCATTTCATGGGTTGACTTAGGCATGCAAAGTTCAT
1 CTCTCCGATCGGTTGAGCGCCCGCA-TACTCGTTTCATGGGTTGACTTAGGCATGCAAAGTTCAT
* * * * * *
14749475 TCCCGGTCTATGCTCCAACCGAACCGAGGGACCCATAGCAGGATAGACAGCATGCAGAGGGGGGC
65 TCCTGGTCTAAGCCCCAACCGAACCGAGGGACCCACAGCAGGATAGACAGCACGCAGAGGGAGGC
* **
14749540 CGAGCTGATCCTCAGCTTGTGCATTTTGG
130 CGAGCCGATCCTCAGCTTACGCATTTTGG
* * * * *
14749569 CTCTCCGACCGGTTGAGCGCCCGCATACTCGTTTTATGGGTTGACTTAGGCATACATAGTGCATT
1 CTCTCCGATCGGTTGAGCGCCCGCATACTCGTTTCATGGGTTGACTTAGGCATGCAAAGTTCATT
*
14749634 CATGGTCT
66 CCTGGTCT
14749642 CGACCAACCA
Statistics
Matches: 185, Mismatches: 44, Indels: 4
0.79 0.19 0.02
Matches are distributed among these distances:
157 1 0.01
158 184 0.99
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (158 bp):
CTCTCCGATCGGTTGAGCGCCCGCATACTCGTTTCATGGGTTGACTTAGGCATGCAAAGTTCATT
CCTGGTCTAAGCCCCAACCGAACCGAGGGACCCACAGCAGGATAGACAGCACGCAGAGGGAGGCC
GAGCCGATCCTCAGCTTACGCATTTTGG
Found at i:14752671 original size:26 final size:26
Alignment explanation
Indices: 14752635--14752687 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14752625 GTTGACTTTG
* *
14752635 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
14752661 GCATACGGAGTTCATACCCAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
14752687 G
1 G
14752688 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATACCCAGTCTAA
Found at i:14754087 original size:26 final size:26
Alignment explanation
Indices: 14754057--14754109 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14754047 GTTAACTTAG
14754057 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
14754083 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14754109 G
1 G
14754110 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14755516 original size:26 final size:26
Alignment explanation
Indices: 14755476--14755531 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
14755466 TGGGTTGACT
* * *
14755476 TAAGCATACGGAGTTCATTGCCAGTC
1 TAAGCATACGAAGTTCATTCCCAGTA
*
14755502 TAAGCGTACGAAGTTCATTCCCAGTA
1 TAAGCATACGAAGTTCATTCCCAGTA
14755528 TAAG
1 TAAG
14755532 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.27
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATTCCCAGTA
Found at i:14756755 original size:197 final size:198
Alignment explanation
Indices: 14756371--14756757 Score: 562
Period size: 198 Copynumber: 2.0 Consensus size: 198
14756361 GCATACGAAC
* * ** *
14756371 TTCATTCCCAGTATAAGATCAGACCGGATCGAGGGTTGTGGTAGTAGGACCCGCAGCAAGATCGC
1 TTCATTCCCAGTATAAGATCAGACCAGACCGAGGGTTGCAGTAGTAGGACCAGCAGCAAGATCGC
* * * * * * *
14756436 CAGCATGCAGAGGGGGACCGAGCTGATCCTCGGCTTGCACATTCTGCCTCTCTGGTCGGCTTGAG
66 CAGCACGCAGAGGGGGACCGAGCTGATCCCCGACTTACACATTCTGCCTCTCTCGACCGCTTGAG
14756501 CGCCCGCACGCTCGTTTCATTGGTTGGCTTAGGCATATAGAGTTCATTCCATGTCTAAGCAAGTG
131 CGCCCGCACGCTCGTTTCATTGGTTGGCTTAGGCATATAGAGTTCATTCCATGTCTAAGCAAGTG
14756566 TAA
196 TAA
* * * *
14756569 TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGTAGTAGGACCAGCAGCAGGATCGG
1 TTCATTCCCAGTATAAGATCAGACCAGACCGAGGGTTGCAGTAGTAGGACCAGCAGCAAGATCGC
* * *
14756634 TAGCACGCAGGGGGGGACCGAG-TCGATCCCCGACTTACGCATTCTGCCTCTC-CGACCGCTTGA
66 CAGCACGCAGAGGGGGACCGAGCT-GATCCCCGACTTACACATTCTGCCTCTCTCGACCGCTTGA
* *
14756697 GCGGCCGCACGCTTGTTTCATTGGTTGGCTTAGGCATATAGAGTTCATTCCATGTCTAAGC
130 GCGCCCGCACGCTCGTTTCATTGGTTGGCTTAGGCATATAGAGTTCATTCCATGTCTAAGC
14756758 CCCAGTCAGA
Statistics
Matches: 167, Mismatches: 21, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
197 68 0.41
198 99 0.59
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.24
Consensus pattern (198 bp):
TTCATTCCCAGTATAAGATCAGACCAGACCGAGGGTTGCAGTAGTAGGACCAGCAGCAAGATCGC
CAGCACGCAGAGGGGGACCGAGCTGATCCCCGACTTACACATTCTGCCTCTCTCGACCGCTTGAG
CGCCCGCACGCTCGTTTCATTGGTTGGCTTAGGCATATAGAGTTCATTCCATGTCTAAGCAAGTG
TAA
Found at i:14759082 original size:25 final size:27
Alignment explanation
Indices: 14759048--14759100 Score: 92
Period size: 26 Copynumber: 2.0 Consensus size: 27
14759038 GTTGACTTAG
14759048 GCATACGGAGTTCA-TTCCCAGTCTAA
1 GCATACGGAGTTCATTTCCCAGTCTAA
14759074 GCAT-CGGAGTTCATTTCCCAGTCTAA
1 GCATACGGAGTTCATTTCCCAGTCTAA
14759100 G
1 G
14759101 ATTGAACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 9 0.35
26 17 0.65
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (27 bp):
GCATACGGAGTTCATTTCCCAGTCTAA
Found at i:14759258 original size:26 final size:26
Alignment explanation
Indices: 14759222--14759274 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14759212 GTTGACTTAG
14759222 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
14759248 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14759274 G
1 G
14759275 ATCAGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14759314 original size:174 final size:174
Alignment explanation
Indices: 14758952--14759318 Score: 459
Period size: 174 Copynumber: 2.1 Consensus size: 174
14758942 GCAGGATCGA
* * * * *
14758952 CAGCACGTAGAGAGGGACCGGACCGATCCCCGGCTTGCACATTATGCCTCTCCGACCGGCTCAAC
1 CAGCACGTAGAGGGGGACCGGACCGATCCCCAGCTTGCACATGATGCCTCTCCGACCGACGCAAC
* *
14759017 GCCCGCATGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATCGGA
66 GCCCGAACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATCGGA
* * ** * *
14759082 GTTCATTTCCCAGTCTAAGATTGAACCGGCAGTGGGATCGATAG
131 GTTCATTTCCCAGTCTAAGATAGAACCGACAACGAGATCGACAG
* * ** * **
14759126 CAGCACGCAGAGGGGGACTGGGTCGATCCCCAGCTTGCACATGATGCCTCTCCGATCGACGCAGT
1 CAGCACGTAGAGGGGGACCGGACCGATCCCCAGCTTGCACATGATGCCTCTCCGACCGACGCAAC
* ** **
14759191 GCCCTAACGCTTGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
66 GCCCGAACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT-CGG
*
14759256 AGTTTA-TTCCCAGTCTAAGATCAG-ACCGACAACGAGATCGACAG
130 AGTTCATTTCCCAGTCTAAGAT-AGAACCGACAACGAGATCGACAG
*
14759300 TAGCACGTAGAGGGGGACC
1 CAGCACGTAGAGGGGGACC
14759319 AGGCTGATCC
Statistics
Matches: 162, Mismatches: 29, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
174 153 0.94
175 9 0.06
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (174 bp):
CAGCACGTAGAGGGGGACCGGACCGATCCCCAGCTTGCACATGATGCCTCTCCGACCGACGCAAC
GCCCGAACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATCGGA
GTTCATTTCCCAGTCTAAGATAGAACCGACAACGAGATCGACAG
Found at i:14759388 original size:174 final size:174
Alignment explanation
Indices: 14758952--14759413 Score: 448
Period size: 174 Copynumber: 2.7 Consensus size: 174
14758942 GCAGGATCGA
* * * * * * * * * * *
14758952 CAGCACGTAGAGAGGGACCGGAC-CGATCCCCGGCTTGCACATTATGCCTCTCCGACCGGCTCAA
1 CAGCACGCAGAGGGGGACAGG-CTCGATCCCCAGCTCGCACATCATACCTCTCCGATCGACGCAG
* * *
14759016 CGCCCGCATGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATCGG
65 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATCGG
* * ** * *
14759081 AGTTCATTTCCCAGTCTAAGATTGAACCGGCAGTGGGATCGATAG
130 AGTTCATTTCCCAGTCTAAGATAGAACCGACAACGAGATCGACAG
* * * * * *
14759126 CAGCACGCAGAGGGGGACTGGGTCGATCCCCAGCTTGCACATGATGCCTCTCCGATCGACGCAGT
1 CAGCACGCAGAGGGGGACAGGCTCGATCCCCAGCTCGCACATCATACCTCTCCGATCGACGCAGC
** * *
14759191 GCCCTAACGCTTGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
66 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT-CGG
*
14759256 AGTTTA-TTCCCAGTCTAAGATCAG-ACCGACAACGAGATCGACAG
130 AGTTCATTTCCCAGTCTAAGAT-AGAACCGACAACGAGATCGACAG
* * * * ** * * * *
14759300 TAGCACGTAGAGGGGGACCAGGCT-GATCCTCGGCTCGTGCATCCTACCTTTCTGGTCGACTG-A
1 CAGCACGCAGAGGGGGA-CAGGCTCGATCCCCAGCTCGCACATCATACCTCTCCGATCGAC-GCA
* * *
14759363 GCGCCCGCACGCTCGTTCCGTGGGTTGACTTAGGCATACGTAGTGCATTCC
64 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
14759414 TGGTCTTGAC
Statistics
Matches: 235, Mismatches: 48, Indels: 10
0.80 0.16 0.03
Matches are distributed among these distances:
174 221 0.94
175 14 0.06
ACGTcount: A:0.21, C:0.28, G:0.27, T:0.23
Consensus pattern (174 bp):
CAGCACGCAGAGGGGGACAGGCTCGATCCCCAGCTCGCACATCATACCTCTCCGATCGACGCAGC
GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATCGGA
GTTCATTTCCCAGTCTAAGATAGAACCGACAACGAGATCGACAG
Found at i:14760517 original size:26 final size:26
Alignment explanation
Indices: 14760488--14760540 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14760478 GTTAACTTAG
*
14760488 GCATAC-GAAGCTCATTCCCAGTCTAA
1 GCATACAG-AGCTCATTCCCAATCTAA
*
14760514 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGCTCATTCCCAATCTAA
14760540 G
1 G
14760541 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGCTCATTCCCAATCTAA
Found at i:14763365 original size:26 final size:26
Alignment explanation
Indices: 14763335--14763387 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14763325 GTTGACTTAG
14763335 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
14763361 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
14763387 G
1 G
14763388 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:14767003 original size:26 final size:26
Alignment explanation
Indices: 14766967--14767019 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14766957 GTTGATTTAG
*
14766967 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTACCAATCTAA
* * *
14766993 GCATATGGAGTTCTTTACCAGTCTAA
1 GCATACGGAGTTCATTACCAATCTAA
14767019 G
1 G
14767020 ATAGGACTAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTACCAATCTAA
Found at i:14769843 original size:26 final size:26
Alignment explanation
Indices: 14769809--14769861 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14769799 GTTGACTTAG
*
14769809 GCATCCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
14769835 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14769861 G
1 G
14769862 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14771306 original size:26 final size:30
Alignment explanation
Indices: 14771250--14771310 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 30
14771240 TGTGGGTTGA
*
14771250 CTAAGCATTAGTGGTAGTTCGATTCCTAGT
1 CTAAGCATTAGTGGTAGTTCGATTCCCAGT
14771280 CTAAGCA-TA-TGG-AGTTC-ATTCCCAGT
1 CTAAGCATTAGTGGTAGTTCGATTCCCAGT
14771306 CTAAG
1 CTAAG
14771311 ATTGGACCTG
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
26 13 0.43
27 5 0.17
28 3 0.10
29 2 0.07
30 7 0.23
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.33
Consensus pattern (30 bp):
CTAAGCATTAGTGGTAGTTCGATTCCCAGT
Found at i:14772709 original size:26 final size:26
Alignment explanation
Indices: 14772679--14772757 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
14772669 GTTGACTTAG
*
14772679 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14772705 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14772731 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14772757 G
1 G
14772758 ATCGGATCGG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14774930 original size:84 final size:84
Alignment explanation
Indices: 14774782--14774945 Score: 240
Period size: 84 Copynumber: 2.0 Consensus size: 84
14774772 AGTCGGGAGA
* * * * *
14774782 GGTGTGCTGCTGCTGGGGTAGTCCATCCAAGTCCCCTTGTGGGACTAGCATGATGGTAGGTGTCA
1 GGTGTCCTGCAGCTGGGGCAGTCCACCCAAGTCCCCTTGCGGGACTAGCATGATGGTAGGTGTCA
*
14774847 ACCATGTGTGCGGGCGGCT
66 ACCATGCGTGCGGGCGGCT
*
14774866 GGTGTCCTGCAGCTGGGGCAGTCCACCCAAGTCCCCTTGCGGGACTAGCATGAT-GTTGGATGTC
1 GGTGTCCTGCAGCTGGGGCAGTCCACCCAAGTCCCCTTGCGGGACTAGCATGATGGTAGG-TGTC
*
14774930 AATCATGCGTGCGGGC
65 AACCATGCGTGCGGGC
14774946 AGCCGATACT
Statistics
Matches: 71, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
83 4 0.06
84 67 0.94
ACGTcount: A:0.15, C:0.25, G:0.35, T:0.24
Consensus pattern (84 bp):
GGTGTCCTGCAGCTGGGGCAGTCCACCCAAGTCCCCTTGCGGGACTAGCATGATGGTAGGTGTCA
ACCATGCGTGCGGGCGGCT
Found at i:14777807 original size:26 final size:26
Alignment explanation
Indices: 14777778--14777830 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14777768 GTTGACTTAG
14777778 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
14777804 GCATATGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14777830 G
1 G
14777831 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14779239 original size:26 final size:26
Alignment explanation
Indices: 14779203--14779253 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
14779193 TGACATTAGG
*
14779203 CATACGGAGTTCATTCCCAGTCTAAA
1 CATACGGAGTTCATTCCCAATCTAAA
14779229 CATACGGAGTTCATTCCCAATCTAA
1 CATACGGAGTTCATTCCCAATCTAA
14779254 GATCGGACCG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAATCTAAA
Found at i:14781504 original size:26 final size:26
Alignment explanation
Indices: 14781474--14781524 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
14781464 TGACTTAGGT
* *
14781474 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGAAGTTCATTCCCAGGCTAAGC
14781500 ATACGAAGTTCATTCCCAGGCTAAG
1 ATACGAAGTTCATTCCCAGGCTAAG
14781525 ATCGAACCGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.25
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGGCTAAGC
Found at i:14781972 original size:185 final size:185
Alignment explanation
Indices: 14781619--14781981 Score: 464
Period size: 185 Copynumber: 2.0 Consensus size: 185
14781609 CTGAGTGCCT
* * *
14781619 GCACGCTCGTTTCTTGGGTTGACTTAGGCAGGCCGAGTTCATTCCCGGTCTAAGCCCCAACCGGA
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCAGGCAGAGTTCATTCCCAGTCTAAGCCCCAACCGGA
** *
14781684 CTGAGGGATCCACAGCGGGATCAGCAGCTTACAGAGCGGGGTCGGGTCGATCCTCGGCTTGCACA
66 CTGAGGGATCCACAGCGGGATCAGCAGCACACAGAGCGGGGCCGGGTCGATCCTCGGCTTGCACA
* * * *
14781749 TTCTGACTCTCCGACTAGTTGAGCACCTGCACGCTCGTTTCGTGGGTTGACTCTC
131 TTCTGACTCTCCGACCAGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTCTC
* * *
14781804 GCACGTTCGTTTCGTGGGTTGACTTAGGCATGCAGAGTTCATTCTCAGTCTAAGCCCCAACCGGA
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCAGGCAGAGTTCATTCCCAGTCTAAGCCCCAACCGGA
* * *
14781869 CTGAGGGA-CCTGCAGCGGGATCGGCAGCACGCAGAG-GGGGACCGGGAT-GATCCTCGGCTTGC
66 CTGAGGGATCC-ACAGCGGGATCAGCAGCACACAGAGCGGGG-CCGGG-TCGATCCTCGGCTTGC
* * * * * *
14781931 GCATTCT-AGCTCTTCGGCCAGCTGAGCGCCCGTATGCTCGTTTCATGGGTT
128 ACATTCTGA-CTCTCCGACCAGCTGAGCACCCGCACGCTCGTTTCATGGGTT
14781982 AACTTAGGCA
Statistics
Matches: 152, Mismatches: 22, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
184 7 0.05
185 144 0.95
186 1 0.01
ACGTcount: A:0.17, C:0.29, G:0.31, T:0.24
Consensus pattern (185 bp):
GCACGCTCGTTTCGTGGGTTGACTTAGGCAGGCAGAGTTCATTCCCAGTCTAAGCCCCAACCGGA
CTGAGGGATCCACAGCGGGATCAGCAGCACACAGAGCGGGGCCGGGTCGATCCTCGGCTTGCACA
TTCTGACTCTCCGACCAGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTCTC
Found at i:14784552 original size:26 final size:26
Alignment explanation
Indices: 14784503--14784553 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
14784493 TGACTTAGGT
* *
14784503 ATACGGAGTTCATTCTCAGTCTAAGC
1 ATACGAAGTTCATTCTCAGGCTAAGC
14784529 ATACGAAGTTCATTC-CTAGGCTAAG
1 ATACGAAGTTCATTCTC-AGGCTAAG
14784554 ATCGGACCGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGAAGTTCATTCTCAGGCTAAGC
Found at i:14784930 original size:157 final size:158
Alignment explanation
Indices: 14784643--14784993 Score: 485
Period size: 157 Copynumber: 2.2 Consensus size: 158
14784633 GTCGACCGAG
*
14784643 CGCCCGCACGCTCGTTTCGTGGGTAGACTTAGGCATGTCGAGTTCATTCCCGGTCTAAGCCCCAA
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATGTCGAGTTCATTCCCGGTCTAAGCCCCAA
* * * ** * ** *
14784708 TCGGATTGAGGGATCCACAGTGGGATCGGTAGCTTGCAGAGCGGGGTCGGGTCGATCCTCAGCTT
66 CCGGACTGAGGGACCCACAACGGGATCGGCAGCACGCAGAGCGGGGCCGGGTCGATCCTCAGCTT
14784773 GTGCATTCTGACTCTCCGGCCAGCTGAA
131 GTGCATTCTGACTCTCCGGCCAGCTGAA
* *
14784801 CGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATG-CAGAGTTCATTCTC-GTCTAAGCCCCA
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATGTC-GAGTTCATTCCCGGTCTAAGCCCCA
*
14784864 ACCGGACTGAGGGACCCACAACGGGATCGGCAGCACGCAGAG-GGGGACCGGG-CTGATCCTCGG
65 ACCGGACTGAGGGACCCACAACGGGATCGGCAGCACGCAGAGCGGGG-CCGGGTC-GATCCTCAG
* *
14784927 CTTGTGCATTCTGGCTCTCCGGCCAGCTGAG
128 CTTGTGCATTCTGACTCTCCGGCCAGCTGAA
* * *
14784958 TGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCAT
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
14784994 ACGTAGTGCA
Statistics
Matches: 171, Mismatches: 19, Indels: 7
0.87 0.10 0.04
Matches are distributed among these distances:
156 5 0.03
157 120 0.70
158 46 0.27
ACGTcount: A:0.17, C:0.29, G:0.31, T:0.23
Consensus pattern (158 bp):
CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATGTCGAGTTCATTCCCGGTCTAAGCCCCAA
CCGGACTGAGGGACCCACAACGGGATCGGCAGCACGCAGAGCGGGGCCGGGTCGATCCTCAGCTT
GTGCATTCTGACTCTCCGGCCAGCTGAA
Found at i:14787449 original size:26 final size:26
Alignment explanation
Indices: 14787420--14787471 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
14787410 GTTGACTTAG
* *
14787420 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
14787446 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
14787472 AATTAGACCG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:14794549 original size:15 final size:12
Alignment explanation
Indices: 14794508--14794540 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
14794498 AAGGGTTACG
14794508 GCAGCAGGACCA
1 GCAGCAGGACCA
14794520 GCAGCAGGACCA
1 GCAGCAGGACCA
14794532 GCAGCAGGA
1 GCAGCAGGA
14794541 TCGACAGCAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.33, C:0.30, G:0.36, T:0.00
Consensus pattern (12 bp):
GCAGCAGGACCA
Found at i:14794840 original size:26 final size:26
Alignment explanation
Indices: 14794811--14794863 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14794801 GTTGACTTAG
*
14794811 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
14794837 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
14794863 G
1 G
14794864 ATCGAACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:14794938 original size:174 final size:173
Alignment explanation
Indices: 14794738--14795186 Score: 562
Period size: 174 Copynumber: 2.6 Consensus size: 173
14794728 GGGATCGGAC
* * *
14794738 CGATCCTCGGTTTACGCATTATGCCTCTCTGATCGAGTCAGTGCTCGCATGCTCGTTTCGTGGGT
1 CGATCCTCGGCTTACGCATTATGCCTCTCTGATCGAGTCAGTGC-CGCACGCTCGTTTCATGGGT
14794803 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATC-
65 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCA
*
14794867 GAACCGACAGCGAGATCGGCAGCAGCACGTAAAGAGGGACCGAGT
130 G-ACCGACAGCGAGATCGGCAGCAGCACGCAAAGAGGGACCGAGT
* * *
14794912 CGATCCTCGGCTTACGCATTATGCCTCT-TCGATCG-GCTTAGTGCCTGCACGCTCGTTCCATCG
1 CGATCCTCGGCTTACGCATTATGCCTCTCT-GATCGAG-TCAGTGCC-GCACGCTCGTTTCATGG
* * * *
14794975 GTTGACCTAGGCATACGAAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
63 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGAT
* * * * * *
14795040 CAGACCGACAGCGGGATCGGTAGCAGCACGCAGAGGGGGATCGGGT
128 CAGACCGACAGCGAGATCGGCAGCAGCACGCAAAGAGGGACCGAGT
* * ** * * * * * *
14795086 CGATCCTCGGCTTGCACATCCTGTCTCTCCGATCGATTGAGCGCCCGCACGCTCATTTCATGGGT
1 CGATCCTCGGCTTACGCATTATGCCTCTCTGATCGAGTCAGTG-CCGCACGCTCGTTTCATGGGT
* *
14795151 TGACTTAGGCATGCGGAGTTCATTCCCGGTCTAAGC
65 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
14795187 CCCAATCGGA
Statistics
Matches: 234, Mismatches: 34, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
173 3 0.01
174 228 0.97
175 3 0.01
ACGTcount: A:0.21, C:0.28, G:0.26, T:0.25
Consensus pattern (173 bp):
CGATCCTCGGCTTACGCATTATGCCTCTCTGATCGAGTCAGTGCCGCACGCTCGTTTCATGGGTT
GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAG
ACCGACAGCGAGATCGGCAGCAGCACGCAAAGAGGGACCGAGT
Found at i:14795014 original size:26 final size:26
Alignment explanation
Indices: 14794985--14795037 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14794975 GTTGACCTAG
14794985 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
* *
14795011 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
14795037 G
1 G
14795038 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:14798319 original size:26 final size:26
Alignment explanation
Indices: 14798289--14798341 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14798279 GTTGACTTAG
**
14798289 GCATACGAAGTTCATTCCTTGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
14798315 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
14798341 G
1 G
14798342 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:14802630 original size:197 final size:197
Alignment explanation
Indices: 14802270--14802644 Score: 436
Period size: 197 Copynumber: 1.9 Consensus size: 197
14802260 TTTATTCCAG
* * * * *
14802270 TCTAAGATCAGACCAAATGGAGGGTTACGGTAGCAGGACCCGCAGCGAGATCGATAGCACGCAGA
1 TCTAAGATCAGACCAAATCGAGGGTTACGGTAGCAGGACCAGCAACGAGATCGACAGCACGAAGA
* * * * *
14802335 GGGGGACCGGGTCGATCCTCGGCTTGCACATTCTGCCTTTCTAGCCAGCTGAGAGCCCGCACGCT
66 GGGGGACAGGGTCGATCCTCGACCTGCACATTCTGCCTCTCCAGCCAGCTGAGAGCCCGCACGCT
* *
14802400 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCAAGTCTCGTTCATTCC
131 CATTTCATGGGTTGACTTAGGCATACAGAGTTCAT-CCCATGTCTAAGCAAGTCTCGTTCATTCC
14802464 CAC
195 CAC
* ** * *
14802467 TCTAAGATCAGACCAGATCGAGGGTTGTGGTTGTAGGACCAGCAAC-AGGATCGACAGCACGTAA
1 TCTAAGATCAGACCAAATCGAGGGTTACGGTAGCAGGACCAGCAACGA-GATCGACAGCACG-AA
* * * * * *
14802531 G-GGGGGATAGGGTCGATCCTTGACCTGCGCATTCTGCCTCTCCGGCCAGTTGAGCA-CCCGCAT
64 GAGGGGGACAGGGTCGATCCTCGACCTGCACATTCTGCCTCTCCAGCCAGCTGAG-AGCCCGCAC
* * *
14802594 GCTCATTTCGTGGGTTGGCTTA-GCAATACAGAGTTCATTCCATGTCTAAGC
128 GCTCATTTCATGGGTTGACTTAGGC-ATACAGAGTTCATCCCATGTCTAAGC
14802645 CCCAGTCAGA
Statistics
Matches: 147, Mismatches: 26, Indels: 10
0.80 0.14 0.05
Matches are distributed among these distances:
196 6 0.04
197 138 0.94
198 3 0.02
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (197 bp):
TCTAAGATCAGACCAAATCGAGGGTTACGGTAGCAGGACCAGCAACGAGATCGACAGCACGAAGA
GGGGGACAGGGTCGATCCTCGACCTGCACATTCTGCCTCTCCAGCCAGCTGAGAGCCCGCACGCT
CATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCATGTCTAAGCAAGTCTCGTTCATTCCC
AC
Found at i:14803992 original size:197 final size:197
Alignment explanation
Indices: 14803655--14804041 Score: 481
Period size: 197 Copynumber: 2.0 Consensus size: 197
14803645 GGCATACGAA
* * * * * *
14803655 GTTCATTTCGAGTCTAAGATCGGACTGGATCAAGGGTTGCGGTAGCAGGACCAGCAACGGGATCG
1 GTTCATTCCCAGTCTAAGATCAGACCGGATCAAGGGTTGCGGTAGCAGGACCAACAACAGGATCG
* * * * * *
14803720 ACAGCACACAGAGGGGGACGGGGCCGATCCTCGGCTTGCACATTCTGCCTCTCTGGCCGATTGAG
66 AAAGCACACAGAGGGGGACGGGGCCGATCCGCGACTTGCACATTCTGCCACTCCGACCGATTGAG
* * *
14803785 CGCTCGCACGCTCGTTTCGTGGGCTGACTTAGGCATACGGAGTTCA-TCCTTAGTCTAAGCAAGT
131 CGCCCGCACGCTCGTTTCGTGGGCTGACTTAGGCATACAGAGTTCATTCCAT-GTCTAAGCAAGT
14803849 CTC
195 CTC
* * *
14803852 GTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGTAGCAGGACCAACAGCATGATCG
1 GTTCATTCCCAGTCTAAGATCAGACCGGATCAAGGGTTGCGGTAGCAGGACCAACAACAGGATCG
* ** * ** * *
14803917 AAAGCACGCAGAGGGGGATC-TTGTCGATCCGCGACTTGCGTATTTTGCCACTCCGACCGGTTGA
66 AAAGCACACAGAGGGGGA-CGGGGCCGATCCGCGACTTGCACATTCTGCCACTCCGACCGATTGA
* * *
14803981 GCGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
130 GCGCCCGCACGCTCGTTTCGTGGGCTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGC
14804042 CCCAACTGAA
Statistics
Matches: 159, Mismatches: 29, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
197 154 0.97
198 5 0.03
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.24
Consensus pattern (197 bp):
GTTCATTCCCAGTCTAAGATCAGACCGGATCAAGGGTTGCGGTAGCAGGACCAACAACAGGATCG
AAAGCACACAGAGGGGGACGGGGCCGATCCGCGACTTGCACATTCTGCCACTCCGACCGATTGAG
CGCCCGCACGCTCGTTTCGTGGGCTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGCAAGTC
TC
Found at i:14804830 original size:27 final size:28
Alignment explanation
Indices: 14804792--14804844 Score: 90
Period size: 27 Copynumber: 1.9 Consensus size: 28
14804782 AAACTCCTTC
*
14804792 TAAAAAGATTTTAAAAAATCCTGAACTG
1 TAAAAAGATTTTAAAAAATCCCGAACTG
14804820 TAAAAAG-TTTTAAAAAATCCCGAAC
1 TAAAAAGATTTTAAAAAATCCCGAAC
14804845 GGGTTGTCTT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
27 17 0.71
28 7 0.29
ACGTcount: A:0.51, C:0.13, G:0.09, T:0.26
Consensus pattern (28 bp):
TAAAAAGATTTTAAAAAATCCCGAACTG
Found at i:14805599 original size:171 final size:171
Alignment explanation
Indices: 14805342--14805756 Score: 487
Period size: 171 Copynumber: 2.4 Consensus size: 171
14805332 GACTTGCACG
* * * * *
14805342 TTCTGCCTCTCCGGCCGGTTGAGCACCCACACACTTGTTTTGTGGGTTGGCTTAGGCATACGGAG
1 TTCTGCCTCTCCGACCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG
* * *
14805407 TTCATTCCATGTCTAAGCCCCAGTCGGATCGAGGGTTGTGGCT-GCAGGACTGGCAGCAGGATCG
66 TTCATTCCATGTCTAAGCCCCAGTCGGACCAAAGGTTGTGG-TAGCAGGACTGGCAGCAGGATCG
** * *
14805471 GTAGCATGCAGAGA-GGG-ATCGGGTCGAACCCT-GGCTTGGGCA
130 ACAGCA--CAGAGAGGGGAATCGGGCCG-ACCCTCGGCTTGCGCA
* * *
14805513 TTCTTCCTCTCCAACCGGTTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAG
1 TTCTGCCTCTCCGACCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG
* * *
14805578 TTCATTCCATGTCTAAGCCCCAGTCGGACCAAAGGTTGTGGTAGCGGGACTGGTAGTAGGATCGA
66 TTCATTCCATGTCTAAGCCCCAGTCGGACCAAAGGTTGTGGTAGCAGGACTGGCAGCAGGATCGA
* * *
14805643 CAGCACATAGAGGGGAATCGGGCCGATCCTCGGCTTGCGTA
131 CAGCACAGAGAGGGGAATCGGGCCGACCCTCGGCTTGCGCA
* * * * *** * * *
14805684 TTATGCTTCTCCGACCGGCTCAATGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAG
1 TTCTGCCTCTCCGACCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG
14805749 TTCATTCC
66 TTCATTCC
14805757 CAATCTAAGC
Statistics
Matches: 206, Mismatches: 34, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
169 5 0.02
170 8 0.04
171 193 0.94
ACGTcount: A:0.18, C:0.26, G:0.30, T:0.26
Consensus pattern (171 bp):
TTCTGCCTCTCCGACCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG
TTCATTCCATGTCTAAGCCCCAGTCGGACCAAAGGTTGTGGTAGCAGGACTGGCAGCAGGATCGA
CAGCACAGAGAGGGGAATCGGGCCGACCCTCGGCTTGCGCA
Found at i:14805775 original size:26 final size:26
Alignment explanation
Indices: 14805739--14805791 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14805729 GTTGACTTAG
*
14805739 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
14805765 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
14805791 G
1 G
14805792 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:14806646 original size:26 final size:26
Alignment explanation
Indices: 14806609--14806661 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14806599 GTTGACTTAG
14806609 GCATATGAAGTTCATTCCCAATCTAA
1 GCATATGAAGTTCATTCCCAATCTAA
* * *
14806635 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATATGAAGTTCATTCCCAATCTAA
14806661 G
1 G
14806662 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATATGAAGTTCATTCCCAATCTAA
Found at i:14806876 original size:12 final size:12
Alignment explanation
Indices: 14806843--14806876 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
14806833 CGAGGGTTGT
14806843 GGTAGCGGGACC
1 GGTAGCGGGACC
*
14806855 GGCAGCGGGACC
1 GGTAGCGGGACC
*
14806867 GGTAGTGGGA
1 GGTAGCGGGA
14806877 TCAACAGCAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.18, C:0.21, G:0.53, T:0.09
Consensus pattern (12 bp):
GGTAGCGGGACC
Found at i:14811013 original size:26 final size:26
Alignment explanation
Indices: 14810983--14811035 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14810973 GTTGACTTAG
14810983 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
14811009 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
14811035 G
1 G
14811036 TCGGATCGAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:14813010 original size:26 final size:26
Alignment explanation
Indices: 14812981--14813033 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14812971 GTTGACTTAG
*
14812981 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTACCAATCTAA
*
14813007 GCATACGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTCATTACCAATCTAA
14813033 G
1 G
14813034 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTACCAATCTAA
Found at i:14814433 original size:26 final size:26
Alignment explanation
Indices: 14814404--14814456 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14814394 GTTGACTTAG
*
14814404 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
*
14814430 GCATATGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
14814456 G
1 G
14814457 GTCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Done.