Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19866354
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 74000 characters in sequence are not A, C, G, or T
File 63 of 100
Found at i:14815845 original size:26 final size:26
Alignment explanation
Indices: 14815814--14815866 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14815804 GTTGACTTAG
*
14815814 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
14815840 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
14815866 G
1 G
14815867 ATCGAACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:14817251 original size:26 final size:26
Alignment explanation
Indices: 14817215--14817267 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14817205 GTTGACTTAG
*
14817215 GCATATGGAGTTAATTCCCAATCTAA
1 GCATACGGAGTTAATTCCCAATCTAA
* *
14817241 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAATCTAA
14817267 G
1 G
14817268 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAATCTAA
Found at i:14817413 original size:172 final size:171
Alignment explanation
Indices: 14817104--14817414 Score: 412
Period size: 172 Copynumber: 1.8 Consensus size: 171
14817094 GCAGCGGGAT
* * * *
14817104 CGACAGTGGGATCGACAGCACGCAGAGGGGGACCGGGCCGATCTTCGACTTGCGCATTATGCCTC
1 CGACAGTGGGATCGACAGCACACAGAAGGGGACCGGGCCGATCCTAGACTTGCGCATTATGCCTC
**
14817169 TCTGACCGGCTCAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTAATTCCC
66 TCTGACCGGCTCAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTAATTCCC
14817234 AATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
131 AATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* * *
14817275 CGACAGTGGGATTGACAGCAGCACACAGAAGGGGACCGGGCCGATCCTAGGCTTGCGCA-TCTGC
1 CGACAGTGGGATCG--A-CAGCACACAGAAGGGGACCGGGCCGATCCTAGACTTGCGCATTATGC
* ** * * * *
14817339 CTCT-TCGACTGGCTCAG-TGCCGTATGCTTGTTTCGTGGGTTGACTTAGGCATGCAGAGTTCAT
63 CTCTCT-GACCGGCTCAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTAAT
*
14817402 TCCCGATCTAAGC
127 TCCCAATCTAAGC
14817415 CCCAACCGGA
Statistics
Matches: 119, Mismatches: 17, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
171 13 0.11
172 51 0.43
173 19 0.16
174 36 0.30
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (171 bp):
CGACAGTGGGATCGACAGCACACAGAAGGGGACCGGGCCGATCCTAGACTTGCGCATTATGCCTC
TCTGACCGGCTCAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTAATTCCC
AATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
Found at i:14818474 original size:26 final size:26
Alignment explanation
Indices: 14818438--14818490 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14818428 GTTGACTTAG
14818438 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14818464 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14818490 G
1 G
14818491 ATCAGACCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14821940 original size:25 final size:24
Alignment explanation
Indices: 14821911--14821960 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 24
14821901 AGGCATACGA
14821911 AGTTCATTCCCAATCTAAGCATCGG
1 AGTTCATTCCCAATCTAAG-ATCGG
*
14821936 AGTTCATTCCCAGTCTAAGATCGG
1 AGTTCATTCCCAATCTAAGATCGG
14821960 A
1 A
14821961 CCAGCAATGG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 6 0.25
25 18 0.75
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (24 bp):
AGTTCATTCCCAATCTAAGATCGG
Found at i:14822234 original size:174 final size:173
Alignment explanation
Indices: 14821873--14822205 Score: 427
Period size: 174 Copynumber: 1.9 Consensus size: 173
14821863 CGGCTCAATG
** * *
14821873 CCCGCACGCTCGTTTCATGGGTTGACAAAGGCATACGAAGTTCATTCCCAATCTAAGCATCGGAG
1 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGCTCACTCCCAATCTAAGCATCGGAG
* * * * *
14821938 TTCATTCCCAGTCTAAGATCGGACCAGCAATGGGATCGGTAGCAGCATGCAGAAGGGGATCGAGC
66 TTCATTCCCAGTCTAAGATCGAACCAGCAACGGGATAGGCAGCAGCATGCAGAAGGGGACCGAGC
* * *
14822003 CGATCCCCGACTTACGTATTATGCCTCTCCGACTGACTCAGCA
131 CGATCCCCGACTTACGCATCATACCTCTCCGACTGACTCAGCA
* * * *
14822046 CCCACACACTCGTTTCATGGGTTGACTTAGGCATACGAAGCTCACTCCCAGTCTAAGCATATGGA
1 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGCTCACTCCCAATCTAAGCAT-CGGA
* * *
14822111 GTTCATTCCCAGTCTACGATCGAACC-GACAGCGGGATAGGCAGCAGCATGCAGAGGGGGACC-A
65 GTTCATTCCCAGTCTAAGATCGAACCAG-CAACGGGATAGGCAGCAGCATGCAGAAGGGGACCGA
* * *
14822174 GACCGATCCTCGACTTGCGCATCCTACCTCTC
129 G-CCGATCCCCGACTTACGCATCATACCTCTC
14822206 TGGTCGGTTG
Statistics
Matches: 135, Mismatches: 22, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
173 56 0.41
174 79 0.59
ACGTcount: A:0.25, C:0.30, G:0.24, T:0.21
Consensus pattern (173 bp):
CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGCTCACTCCCAATCTAAGCATCGGAG
TTCATTCCCAGTCTAAGATCGAACCAGCAACGGGATAGGCAGCAGCATGCAGAAGGGGACCGAGC
CGATCCCCGACTTACGCATCATACCTCTCCGACTGACTCAGCA
Found at i:14831162 original size:45 final size:45
Alignment explanation
Indices: 14831131--14831217 Score: 138
Period size: 45 Copynumber: 1.9 Consensus size: 45
14831121 TTGGGGCATG
* *
14831131 TGCTCGTACCAAGGGCCAGCGCATGCTGATGGTGGTCGATGCGGC
1 TGCTCGCACCAAGGGCCAGCGCATGCTGATGGTGGTCGAGGCGGC
**
14831176 TGCTCGCACCAAGGGCCAGCGTGTGCTGATGGTGGTCGAGGC
1 TGCTCGCACCAAGGGCCAGCGCATGCTGATGGTGGTCGAGGC
14831218 AACCGCCCGC
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.15, C:0.26, G:0.39, T:0.20
Consensus pattern (45 bp):
TGCTCGCACCAAGGGCCAGCGCATGCTGATGGTGGTCGAGGCGGC
Found at i:14831229 original size:45 final size:45
Alignment explanation
Indices: 14831138--14831231 Score: 125
Period size: 45 Copynumber: 2.1 Consensus size: 45
14831128 ATGTGCTCGT
* ** * *
14831138 ACCAAGGGCCAGCGCATGCTGATGGTGGTCGATGCGGCTGCTCGC
1 ACCAAGGGCCAGCGCATGCTGATGGTGGTCGAGGCAACCGCCCGC
**
14831183 ACCAAGGGCCAGCGTGTGCTGATGGTGGTCGAGGCAACCGCCCGC
1 ACCAAGGGCCAGCGCATGCTGATGGTGGTCGAGGCAACCGCCCGC
14831228 ACCA
1 ACCA
14831232 GATCGAGGCA
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.18, C:0.31, G:0.36, T:0.15
Consensus pattern (45 bp):
ACCAAGGGCCAGCGCATGCTGATGGTGGTCGAGGCAACCGCCCGC
Found at i:14831299 original size:45 final size:45
Alignment explanation
Indices: 14831245--14831518 Score: 205
Period size: 45 Copynumber: 6.1 Consensus size: 45
14831235 CGAGGCATGT
*
14831245 GCCCACACCAAGGCCCGACATGTGCCGATGGTGTTCGAGGCAACC
1 GCCCGCACCAAGGCCCGACATGTGCCGATGGTGTTCGAGGCAACC
** * * *
14831290 GCCCGCACCAAGGGACGGCTTATGCCGATGGTGGTT-GAGGCAACC
1 GCCCGCACCAAGGCCCGACATGTGCCGATGGT-GTTCGAGGCAACC
** * * * * * * * * * *
14831335 GCCCGTTCTAAGGGCC-ATCTTCTACCAATGGTGGTCAACGCAACA
1 GCCCGCACCAAGGCCCGA-CATGTGCCGATGGTGTTCGAGGCAACC
** *
14831380 GCCCGCACCAAGGGTCGACTTGTGCCGATGGTGTTCGAGGCAACC
1 GCCCGCACCAAGGCCCGACATGTGCCGATGGTGTTCGAGGCAACC
* * * * *
14831425 GCCCGTACCAAGGCTCGGCATGTGCCGATAGTGGTT-GAGGTAACC
1 GCCCGCACCAAGGCCCGACATGTGCCGATGGT-GTTCGAGGCAACC
* * * **
14831470 GCCCGTACCATGACCC-AGCATGTGCCGATGGTGTTCGATTCAACC
1 GCCCGCACCAAGGCCCGA-CATGTGCCGATGGTGTTCGAGGCAACC
14831515 GCCC
1 GCCC
14831519 TCACTAGGGG
Statistics
Matches: 179, Mismatches: 43, Indels: 14
0.76 0.18 0.06
Matches are distributed among these distances:
44 5 0.03
45 167 0.93
46 7 0.04
ACGTcount: A:0.20, C:0.32, G:0.30, T:0.18
Consensus pattern (45 bp):
GCCCGCACCAAGGCCCGACATGTGCCGATGGTGTTCGAGGCAACC
Found at i:14831474 original size:90 final size:89
Alignment explanation
Indices: 14831251--14831479 Score: 230
Period size: 90 Copynumber: 2.5 Consensus size: 89
14831241 ATGTGCCCAC
*
14831251 ACCAAGGCCCGACATGTGCCGATGGT-GTTCGAGGCAACCGCCCGCACCAAGGGACGGCTTATGC
1 ACCAAGG-CCGACATGTGCCGATGGTGGTT-GAGGCAACCGCCCGCACCAAGGGACGACTTATGC
14831315 CGATGGTGGTTGAGGCAACCGCCCGT
64 CGATGGTGGTTGAGGCAACCGCCCGT
* * * * * * ** * * * *
14831341 TCTAAGGGCC-ATCTTCTACCAATGGTGGTCAACGCAACAGCCCGCACCAAGGGTCGACTTGTGC
1 ACCAA-GGCCGA-CATGTGCCGATGGTGGTTGAGGCAACCGCCCGCACCAAGGGACGACTTATGC
14831405 CGATGGT-GTTCGAGGCAACCGCCCGT
64 CGATGGTGGTT-GAGGCAACCGCCCGT
* * * *
14831431 ACCAAGGCTCGGCATGTGCCGATAGTGGTTGAGGTAACCGCCCGTACCA
1 ACCAAGGC-CGACATGTGCCGATGGTGGTTGAGGCAACCGCCCGCACCA
14831480 TGACCCAGCA
Statistics
Matches: 106, Mismatches: 27, Indels: 12
0.73 0.19 0.08
Matches are distributed among these distances:
89 7 0.07
90 95 0.90
91 4 0.04
ACGTcount: A:0.21, C:0.31, G:0.31, T:0.18
Consensus pattern (89 bp):
ACCAAGGCCGACATGTGCCGATGGTGGTTGAGGCAACCGCCCGCACCAAGGGACGACTTATGCCG
ATGGTGGTTGAGGCAACCGCCCGT
Found at i:14831502 original size:135 final size:135
Alignment explanation
Indices: 14831245--14831490 Score: 330
Period size: 135 Copynumber: 1.8 Consensus size: 135
14831235 CGAGGCATGT
* *
14831245 GCCCACACCAAGGCCCGACATGTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAAGGGACGGCT
1 GCCCACACCAAGGCCCGACATGTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAAGGCACGGCA
* * * ** * *
14831310 TATGCCGATGGTGGTTGAGGCAACCGCCCGTTCTAAGGGCCATCTTCTACCAATGGTGGTCAACG
66 TATGCCGATAGTGGTTGAGGCAACCGCCCGTACCAAGACCCAGCATCTACCAATGGTGGTCAACG
14831375 CAACA
131 CAACA
* ** * * *
14831380 GCCCGCACCAAGGGTCGACTTGTGCCGATGGTGTTCGAGGCAACCGCCCGTACCAAGGCTCGGCA
1 GCCCACACCAAGGCCCGACATGTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAAGGCACGGCA
* * *
14831445 TGTGCCGATAGTGGTTGAGGTAACCGCCCGTACCATGACCCAGCAT
66 TATGCCGATAGTGGTTGAGGCAACCGCCCGTACCAAGACCCAGCAT
14831491 GTGCCGATGG
Statistics
Matches: 93, Mismatches: 18, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
135 93 1.00
ACGTcount: A:0.21, C:0.32, G:0.30, T:0.17
Consensus pattern (135 bp):
GCCCACACCAAGGCCCGACATGTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAAGGCACGGCA
TATGCCGATAGTGGTTGAGGCAACCGCCCGTACCAAGACCCAGCATCTACCAATGGTGGTCAACG
CAACA
Found at i:14831545 original size:135 final size:135
Alignment explanation
Indices: 14831267--14831553 Score: 297
Period size: 135 Copynumber: 2.1 Consensus size: 135
14831257 GCCCGACATG
* * *
14831267 TGCCGATGGTGTTCGAGGCAACCGCCCGCACCAAGGGACGGCTTATGCCGATGGTGGTTGAGGCA
1 TGCCGATGGTGTTCGAGGCAACCGCCCGCACCAAGGCACGGCATATGCCGATAGTGGTTGAGGCA
* * ** * * * *
14831332 ACCGCCCGTTCTAAGGGCCATCTTCTACCAATGGTGGTCAACGCAACAGCCCGCACCAAGGGTCG
66 ACCGCCCGTACCAAGACCCAGCATCTACCAATGGTGGTCAACGCAACAGCCCGCACCAAGGGGCC
*
14831397 ACTTG
131 ACTTA
* * * *
14831402 TGCCGATGGTGTTCGAGGCAACCGCCCGTACCAAGGCTCGGCATGTGCCGATAGTGGTTGAGGTA
1 TGCCGATGGTGTTCGAGGCAACCGCCCGCACCAAGGCACGGCATATGCCGATAGTGGTTGAGGCA
* * * * * * ** * * *
14831467 ACCGCCCGTACCATGACCCAGCATGTGCCGATGGTGTTCGATTCAACCGCCCTCA-CTAGGGGCC
66 ACCGCCCGTACCAAGACCCAGCATCTACCAATGGTGGTCAACGCAACAGCCCGCACCAAGGGGCC
14831531 ATCTTA
131 A-CTTA
* *
14831537 TGCTGATGGTGATCGAG
1 TGCCGATGGTGTTCGAG
14831554 ATAACCATCC
Statistics
Matches: 122, Mismatches: 29, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
134 7 0.06
135 115 0.94
ACGTcount: A:0.20, C:0.29, G:0.30, T:0.21
Consensus pattern (135 bp):
TGCCGATGGTGTTCGAGGCAACCGCCCGCACCAAGGCACGGCATATGCCGATAGTGGTTGAGGCA
ACCGCCCGTACCAAGACCCAGCATCTACCAATGGTGGTCAACGCAACAGCCCGCACCAAGGGGCC
ACTTA
Found at i:14832724 original size:197 final size:197
Alignment explanation
Indices: 14832386--14832772 Score: 510
Period size: 197 Copynumber: 2.0 Consensus size: 197
14832376 GGCATACAGA
* * * * *
14832386 GTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGATAGCAGGACCTGCAGCGGGATCG
1 GTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCAATAGCAAGACCAGCAGCAGGATCG
* * * ** *
14832451 ACAGCACGCAGAGGGGTATCGGGTCATTCCCCGGCTTGCACATTCTGCCTCTCTGGCCGGCTGAG
66 ACAGCACACAGAGGGGGACCGGGTCATTCCCCAACTTGCACATTCTACCTCTCTGGCCGGCTGAG
** *
14832516 TGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCC-TAGTCTAAGCAAGT
131 TGCCCGCACGCTCGTTTCATGGGTTGACATAGGCATACGGAGTTCATCCCAT-GTCTAAGCAAGT
14832580 CTT
195 CTT
* *
14832583 GTTCATTCCCAGTCTAAGATC-GAATCAGATCGAGGGTTGCAATAGCAAGACCAGTAGCAGGATC
1 GTTCATTCCCAGTCTAAGATCAG-ACCAGATCGAGGGTTGCAATAGCAAGACCAGCAGCAGGATC
* * * * *
14832647 GGCAGCACACAGGGGGGGACCGGGCTGA-TCCCCAACTTGCGCATTCTACCTCTCTGGCCGGTTG
65 GACAGCACACAGAGGGGGACCGGG-TCATTCCCCAACTTGCACATTCTACCTCTCTGGCCGGCTG
* * *
14832711 AGTGCCTGCACGCTCGTTTCATGGGTTGGCATAGGCATACGGAGTTCATTCCATGTCTAAGC
129 AGTGCCCGCACGCTCGTTTCATGGGTTGACATAGGCATACGGAGTTCATCCCATGTCTAAGC
14832773 CCCAGTCGGA
Statistics
Matches: 163, Mismatches: 24, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
196 1 0.01
197 159 0.98
198 3 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (197 bp):
GTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCAATAGCAAGACCAGCAGCAGGATCG
ACAGCACACAGAGGGGGACCGGGTCATTCCCCAACTTGCACATTCTACCTCTCTGGCCGGCTGAG
TGCCCGCACGCTCGTTTCATGGGTTGACATAGGCATACGGAGTTCATCCCATGTCTAAGCAAGTC
TT
Found at i:14832966 original size:26 final size:26
Alignment explanation
Indices: 14832917--14832966 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
14832907 GACTTAGGCA
*
14832917 TACGGAGTTCATTCCTAGTTTAAGCG
1 TACGGAGTTCATTCCTAGTCTAAGCG
14832943 TACGGAGTTCATTTCC-AGTCTAAG
1 TACGGAGTTCA-TTCCTAGTCTAAG
14832967 ATCAGACCGA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.34
Consensus pattern (26 bp):
TACGGAGTTCATTCCTAGTCTAAGCG
Found at i:14834819 original size:45 final size:45
Alignment explanation
Indices: 14834789--14834874 Score: 127
Period size: 45 Copynumber: 1.9 Consensus size: 45
14834779 TTGGGGCATG
* *
14834789 TGCCTGCACCAAGGGCCAGCACGTGCCGATGGTGGTCGATGCGAC
1 TGCCCGCACCAAGGGCCAGCACGTGCCGATGGTGGTCGAGGCGAC
** *
14834834 TGCCCGCACCAAGGGCCAGCGTGTACCGATGGTGGTCGAGG
1 TGCCCGCACCAAGGGCCAGCACGTGCCGATGGTGGTCGAGG
14834875 TAACCGCTTG
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 36 1.00
ACGTcount: A:0.17, C:0.30, G:0.37, T:0.15
Consensus pattern (45 bp):
TGCCCGCACCAAGGGCCAGCACGTGCCGATGGTGGTCGAGGCGAC
Found at i:14834888 original size:45 final size:45
Alignment explanation
Indices: 14834790--14834889 Score: 119
Period size: 45 Copynumber: 2.2 Consensus size: 45
14834780 TGGGGCATGT
* * * *
14834790 GCCTGCACCAAGGGCCAGCACGTGCCGATGGTGGTCGATGCGACT
1 GCCTGCACCAAGGGCCAGCACGTACCGATGGTGGTCGAGGCAACC
* ** *
14834835 GCCCGCACCAAGGGCCAGCGTGTACCGATGGTGGTCGAGGTAACC
1 GCCTGCACCAAGGGCCAGCACGTACCGATGGTGGTCGAGGCAACC
*
14834880 GCTTGCACCA
1 GCCTGCACCA
14834890 GATCGAGGCA
Statistics
Matches: 45, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.19, C:0.32, G:0.34, T:0.15
Consensus pattern (45 bp):
GCCTGCACCAAGGGCCAGCACGTACCGATGGTGGTCGAGGCAACC
Found at i:14834958 original size:45 final size:45
Alignment explanation
Indices: 14834908--14835000 Score: 123
Period size: 45 Copynumber: 2.1 Consensus size: 45
14834898 CATGTGCCCA
* * * **
14834908 CACTAAGGCCCGGTATGTGCCGATGGTGTTTGAGGCAACCCCCTG
1 CACTAAGGCCCAGCATGTGCCGATGGTGTTCGACACAACCCCCTG
* *
14834953 CACTAAGGCCCAGCATGTGCTGATGGTGTTCGACACAACCGCCTG
1 CACTAAGGCCCAGCATGTGCCGATGGTGTTCGACACAACCCCCTG
14834998 CAC
1 CAC
14835001 CAGAGGCCAT
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.20, C:0.31, G:0.28, T:0.20
Consensus pattern (45 bp):
CACTAAGGCCCAGCATGTGCCGATGGTGTTCGACACAACCCCCTG
Found at i:14835439 original size:45 final size:45
Alignment explanation
Indices: 14834923--14835523 Score: 375
Period size: 45 Copynumber: 13.4 Consensus size: 45
14834913 AGGCCCGGTA
* * * * * *
14834923 TGTGCCGATGGTGTTTGAGGCAACC-CCCTGCACTAAGGCCCAGCA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCC-GCACCAGGGGCCAGCT
* * ** * * *
14834968 TGTGCTGATGGTGTTCGACACAACCGCCTGCACCAGAGGCCATCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGGCCAGCT
* ** * *
14835013 TCTGCCGATGGTGGTCGAGGCAAGAGCTCGCACCAAGGGCCAGCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGGCCAGCT
* * * * * * *
14835058 TGTGTCGATGGTGCTAGAGGTAACCGCTCGCACCAAGGGCCATCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGGCCAGCT
* * * * * * * * *
14835103 TCTACCAATGGTGGTCGAGGCAACCGCACGTACCAAGGCCCAACA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGGCCAGCT
** * * *
14835148 CATGCCGATGGTGTTCGAGGCAACCGTCCGCACCAGGGGCCAGCA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGGCCAGCT
* * *
14835193 TGTGCCGATGGTGTTCGAGGCAACCACCCGCACCAGGGG-CATCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGGCCAGCT
* * ** ** * * *
14835237 TTTACCGATGGTGGTCGAGGCAAGAG-CTTCACCATGAGCCGGCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGGCCAGCT
* * * * *
14835281 TGTGCCGATGGTGTTCGAGGTAACCGCCCGCACCA-AGGCTCGGCA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGGC-CAGCT
* * * * *
14835326 TGTGCCGATGGTGGTCAAGGCAACCGCCCACACCACGGCCCAGCA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGGCCAGCT
* * ** * * * *
14835371 TATGCCGATGGTGTTTAATGCAATCGCCCACACCAGGGGCCATCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGGCCAGCT
* * * ** * *
14835416 TGTGCCGATGGTGATCGAGGCAATCGTCTACACCAGGGCCCAACT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGGCCAGCT
* * * ** * * *
14835461 TGGGTCGATGGTGGTTGAGGCAAGTGCCCGTACCAAAGGG-CAGCC
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACC-AGGGGCCAGCT
*
14835506 TGTGCCGATGATGGTCGA
1 TGTGCCGATGGTGGTCGA
14835524 TGCATGTGCC
Statistics
Matches: 424, Mismatches: 126, Indels: 12
0.75 0.22 0.02
Matches are distributed among these distances:
43 8 0.02
44 48 0.11
45 361 0.85
46 7 0.02
ACGTcount: A:0.21, C:0.30, G:0.31, T:0.19
Consensus pattern (45 bp):
TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGGCCAGCT
Found at i:14835453 original size:223 final size:224
Alignment explanation
Indices: 14834925--14835438 Score: 557
Period size: 223 Copynumber: 2.3 Consensus size: 224
14834915 GCCCGGTATG
** * * * * * * **
14834925 TGCCGATGGTGTTTGAGGCAACC-CCCTGCACTAAGGCCCAGCATGTGCTGATGGTGTTCGACAC
1 TGCCGATGGTGTTCAAGGCAACCGCCC-ACACCAGGGGCCAGCATGTGCCGATGGTGATCGAGGC
* ** * *
14834989 AACCGCCTGCACCAGAGGCCATCTTCTGCCGATGGTGGTCGAGGCAAGAGCTCGCACCAAGGGCC
65 AACCACCCACACCAG-GGCCATCTTCTACCGATGGTGGTCGAGGCAAGAGCTCGCACCAAGAGCC
* * * *
14835054 AGCTTGTGTCGATGGTGCTAGAGGTAACCGCTCGCACCAAGGGCCATCTTCTACCAATGGTGGTC
129 AGCTTGTGCCGATGGTGCTAGAGGTAACCGCCCGCACCAAGGGCCAGCATCTACCAATGGTGGTC
* **
14835119 GAGGCAACCGCACGTACCAAGGCCCAACACA
194 AAGGCAACCGCACACACCAAGGCCCAACACA
* * * *
14835150 TGCCGATGGTGTTCGAGGCAACCGTCCGCACCAGGGGCCAGCATGTGCCGATGGTGTTCGAGGCA
1 TGCCGATGGTGTTCAAGGCAACCGCCCACACCAGGGGCCAGCATGTGCCGATGGTGATCGAGGCA
* * * * * *
14835215 ACCACCCGCACCAGGGGCATCTTTTACCGATGGTGGTCGAGGCAAGAGCT-TCACCATGAGCCGG
66 ACCACCCACACCAGGGCCATCTTCTACCGATGGTGGTCGAGGCAAGAGCTCGCACCAAGAGCCAG
* * * * * *
14835279 CTTGTGCCGATGGTGTTCGAGGTAACCGCCCGCACCAA-GGCTCGGCATGTGCCGATGGTGGTCA
131 CTTGTGCCGATGGTGCTAGAGGTAACCGCCCGCACCAAGGGC-CAGCATCTACCAATGGTGGTCA
* * * *
14835343 AGGCAACCGCCCACACCACGGCCCAGCATA
195 AGGCAACCGCACACACCAAGGCCCAACACA
* * * * *
14835373 TGCCGATGGTGTTTAATGCAATCGCCCACACCAGGGGCCATCTTGTGCCGATGGTGATCGAGGCA
1 TGCCGATGGTGTTCAAGGCAACCGCCCACACCAGGGGCCAGCATGTGCCGATGGTGATCGAGGCA
14835438 A
66 A
14835439 TCGTCTACAC
Statistics
Matches: 244, Mismatches: 43, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
222 3 0.01
223 140 0.57
224 33 0.14
225 66 0.27
226 2 0.01
ACGTcount: A:0.21, C:0.30, G:0.30, T:0.18
Consensus pattern (224 bp):
TGCCGATGGTGTTCAAGGCAACCGCCCACACCAGGGGCCAGCATGTGCCGATGGTGATCGAGGCA
ACCACCCACACCAGGGCCATCTTCTACCGATGGTGGTCGAGGCAAGAGCTCGCACCAAGAGCCAG
CTTGTGCCGATGGTGCTAGAGGTAACCGCCCGCACCAAGGGCCAGCATCTACCAATGGTGGTCAA
GGCAACCGCACACACCAAGGCCCAACACA
Found at i:14836812 original size:26 final size:26
Alignment explanation
Indices: 14836776--14836828 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14836766 GTTGACTTAG
14836776 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
14836802 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14836828 G
1 G
14836829 ATCGGATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14839804 original size:26 final size:26
Alignment explanation
Indices: 14839768--14839820 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14839758 GTTGACTTAG
*
14839768 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
14839794 GCATACAGAGTTCATTCCCGGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
14839820 G
1 G
14839821 ATCAAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:14840986 original size:170 final size:169
Alignment explanation
Indices: 14840710--14841182 Score: 518
Period size: 170 Copynumber: 2.8 Consensus size: 169
14840700 ACGATAGCAA
* * * * * *
14840710 GACCCGCAGCGGGATCGACAGCACGCAGAGAGGGATCGGACTGATCCCCGACTTACACATTCTAC
1 GACCAGCAGCAGGATCGACAGCACGCAGAGAGGGATCGG-CCGATCCCCGACTTACGCATTATGC
* * * * * *
14840775 CTCTCTAGCCGACTGAGCACCCGCACACTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATT
65 CTCTCGA-TCGGCTGAGCGCCCGTACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
* * *
14840840 CCATGCCTAAGCTCCAGTCACACCGAGGGTTGTGGCA-TGG
129 CCATGCCTAAGCTCCAGCCACACCGAAGGTTGTGGCAGCGG
*
14840880 GA-CAGGCAGCAGGATCGACAGCACGCAAAGAGGGATCGAGCCGATCCCCGACTTACGCATTATG
1 GACCA-GCAGCAGGATCGACAGCACGCAGAGAGGGATCG-GCCGATCCCCGACTTACGCATTATG
* * * * * *
14840944 CCTCTCCGATCGGTTGAGCGCCCGTACGCTCATTTCGTGGGTTGGCTTGGGCATACGGAGTTTAT
64 CCTCT-CGATCGGCTGAGCGCCCGTACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
** * *
14841009 TCCATGCCTAAGCTCCAGCCGGATCGAAGGTTGTTGCAGCGG
128 TCCATGCCTAAGCTCCAGCCACACCGAAGGTTGTGGCAGCGG
* * * * * * ** * *
14841051 GACCAGCAGTAGGGTCGACGGCACGTAGAGGGGGACCGGGCCGATCCTTGGCTTGCGCATTATGC
1 GACCAGCAGCAGGATCGACAGCACGCAGAGAGGGATC-GGCCGATCCCCGACTTACGCATTATGC
* * *
14841116 CTCTTCGATCGGCTCAGCGCTCGTACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT
65 CTC-TCGATCGGCTGAGCGCCCGTACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
14841181 CC
129 CC
14841183 CAGTCTAAGC
Statistics
Matches: 250, Mismatches: 46, Indels: 13
0.81 0.15 0.04
Matches are distributed among these distances:
169 1 0.00
170 135 0.54
171 110 0.44
172 4 0.02
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.22
Consensus pattern (169 bp):
GACCAGCAGCAGGATCGACAGCACGCAGAGAGGGATCGGCCGATCCCCGACTTACGCATTATGCC
TCTCGATCGGCTGAGCGCCCGTACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
ATGCCTAAGCTCCAGCCACACCGAAGGTTGTGGCAGCGG
Found at i:14841195 original size:26 final size:26
Alignment explanation
Indices: 14841165--14841217 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14841155 GTTGACTTAG
14841165 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
14841191 GCATAGGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14841217 G
1 G
14841218 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14842973 original size:26 final size:26
Alignment explanation
Indices: 14842944--14842996 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14842934 GTTGACTTAG
14842944 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
14842970 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
14842996 G
1 G
14842997 ATCGAACCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:14846531 original size:26 final size:26
Alignment explanation
Indices: 14846502--14846554 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14846492 TCGGTTCGAT
*
14846502 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
14846528 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14846554 C
1 C
14846555 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14846667 original size:12 final size:12
Alignment explanation
Indices: 14846647--14846676 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
14846637 CCTTTTGCGT
*
14846647 GCTGTCGATCCC
1 GCTGCCGATCCC
14846659 GCTGCCGATCCC
1 GCTGCCGATCCC
14846671 GCTGCC
1 GCTGCC
14846677 ACAACCCTCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.07, C:0.47, G:0.27, T:0.20
Consensus pattern (12 bp):
GCTGCCGATCCC
Found at i:14852593 original size:26 final size:26
Alignment explanation
Indices: 14852542--14852594 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14852532 ACCGGTTCGT
*
14852542 CTTAGACTAGGAATGAACTCTATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
14852568 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
14852594 C
1 C
14852595 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:14855364 original size:26 final size:26
Alignment explanation
Indices: 14855326--14855378 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14855316 CCGGCCTGAT
*
14855326 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
14855352 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14855378 C
1 C
14855379 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14857466 original size:26 final size:26
Alignment explanation
Indices: 14857415--14857467 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14857405 TCGATCTGAT
* *
14857415 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCATATG
*
14857441 CTTAGACTGGGAATAAACTTCATATG
1 CTTAGACTGGGAATAAACTCCATATG
14857467 C
1 C
14857468 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:14858866 original size:26 final size:27
Alignment explanation
Indices: 14858837--14858894 Score: 91
Period size: 26 Copynumber: 2.2 Consensus size: 27
14858827 CCAGTCCGAT
*
14858837 CTTAGACTGGGAATGAAATCCGTATG-
1 CTTAGACTGGGAATGAAATCCATATGC
*
14858863 CTTAGACTGGGAATGAACTCCATATGC
1 CTTAGACTGGGAATGAAATCCATATGC
14858890 CTTAG
1 CTTAG
14858895 TCAACCCACG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
26 24 0.83
27 5 0.17
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (27 bp):
CTTAGACTGGGAATGAAATCCATATGC
Found at i:14861695 original size:26 final size:26
Alignment explanation
Indices: 14861659--14861711 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14861649 CCAGTCTGAT
*
14861659 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
14861685 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
14861711 C
1 C
14861712 CTAAGTCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:14868896 original size:26 final size:26
Alignment explanation
Indices: 14868867--14868920 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
14868857 TGGGTTGACA
14868867 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
* *
14868893 TAGGCATACGGAGTTCCTTCCCTGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
14868919 TA
1 TA
14868921 AGATCAAACC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.20, C:0.28, G:0.22, T:0.30
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATTCCCAGTC
Found at i:14869727 original size:171 final size:171
Alignment explanation
Indices: 14869436--14869760 Score: 399
Period size: 171 Copynumber: 1.9 Consensus size: 171
14869426 GCGCATCCCG
*
14869436 CCTCTCTGGCTGGCGTAGTGCCCGTCCGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
1 CCTCTCTGGCTGGCGTAGTGCCCGTCCGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCAT
* * * * * * * * * * *
14869501 TCCCAGTCTAAGATCAAATCGGATCAAGGGTTGCAGTAGTAGGACCCGTAGCAGGAT-AGGCAGC
66 CCCCAATCTAAGATCAAACCAGACCAAGAGTTGCAGCAGCAGGACCAGCAGCAGGATCA-ACAGC
*
14869565 ACGC-AGAGGGGGATCGGGCTGATCCCCAGCTTGCACATTCTC
130 ACGCAAG-GGGGGATCGGGCCGATCCCCAGCTTGCACATTCTC
* * * *
14869607 CCTCTCTGGTTGGC-TGAGTGCCCG-CACGCTCGTTTCATGGGTTGACTTTGGCATATGGAGTTC
1 CCTCTCTGGCTGGCGT-AGTGCCCGTC-CGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTC
*
14869670 ATCCCCAATCTAAGATCAAACCAGACCGAGAGTTGC-GACAGCAGGACCAGCAGCAGGATCAACA
64 ATCCCCAATCTAAGATCAAACCAGACCAAGAGTTGCAG-CAGCAGGACCAGCAGCAGGATCAACA
*
14869734 GCACGTAAGGGGGGATCGGGCCGATCC
128 GCACGCAAGGGGGGATCGGGCCGATCC
14869761 TCAACTTACG
Statistics
Matches: 130, Mismatches: 19, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
170 3 0.02
171 124 0.95
172 3 0.02
ACGTcount: A:0.22, C:0.27, G:0.30, T:0.22
Consensus pattern (171 bp):
CCTCTCTGGCTGGCGTAGTGCCCGTCCGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCAT
CCCCAATCTAAGATCAAACCAGACCAAGAGTTGCAGCAGCAGGACCAGCAGCAGGATCAACAGCA
CGCAAGGGGGGATCGGGCCGATCCCCAGCTTGCACATTCTC
Found at i:14869870 original size:171 final size:170
Alignment explanation
Indices: 14869618--14870032 Score: 433
Period size: 171 Copynumber: 2.4 Consensus size: 170
14869608 CTCTCTGGTT
* * * * *
14869618 GGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTTGGCATATGGAGTTCATCCCCAATCTAA
1 GGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT-TCCAGTCTAA
** * *
14869683 GATCAAACCAGACCGAGAGTTGCGACAGCAGGAC-CAGCAGCAG-GATCAACAGCACGTA-AGGG
65 GCCCCAACCAGACCGAGAGTTGCGACAACAGGACTCAG-AGC-GTGATCAACAGCACGTAGA-GG
* * * * * * *
14869745 GGGATCGGGCCGAT-CCTCAACTTACGTATTCTGTCTGTTCGATC
127 GGGACCGAGCCGATCCCT-AACTTACGCATTATGCCTCTTCGACC
* ** *
14869789 GGTTGAGCGCCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
1 GGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCA-GTCTAA
* * * * * * * *
14869854 GCCCCAATCGGACCGAGGGTTGTGGCAACGGGACTGAGAGCGTGATCGACAGCACGTAGAGGGGG
65 GCCCCAACCAGACCGAGAGTTGCGACAACAGGACTCAGAGCGTGATCAACAGCACGTAGAGGGGG
* *
14869919 ACCGAGCCGATCCCTAGCTTGCGCATTATGCCTCTTCGACC
130 ACCGAGCCGATCCCTAACTTACGCATTATGCCTCTTCGACC
* * * *
14869960 GGCTGAGCTCCCTCACGTTCGTTTCATGGCTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
1 GGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAA
14870025 GCCCCAAC
65 GCCCCAAC
14870033 TGAATCGAGG
Statistics
Matches: 199, Mismatches: 39, Indels: 12
0.80 0.16 0.05
Matches are distributed among these distances:
170 4 0.02
171 186 0.93
172 9 0.05
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.23
Consensus pattern (170 bp):
GGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAG
CCCCAACCAGACCGAGAGTTGCGACAACAGGACTCAGAGCGTGATCAACAGCACGTAGAGGGGGA
CCGAGCCGATCCCTAACTTACGCATTATGCCTCTTCGACC
Found at i:14871671 original size:26 final size:26
Alignment explanation
Indices: 14871635--14871739 Score: 183
Period size: 26 Copynumber: 4.0 Consensus size: 26
14871625 GTTGACTTAG
14871635 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14871661 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* * *
14871687 GTATACGGAGTTCATTCCTAGACTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14871713 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14871739 G
1 G
14871740 ATCGGACCAG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14877443 original size:26 final size:26
Alignment explanation
Indices: 14877407--14877459 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14877397 GTTGACTTAG
*
14877407 GCATACGGAGTTCATTCCCCGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
14877433 GCATATGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14877459 G
1 G
14877460 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14882641 original size:26 final size:26
Alignment explanation
Indices: 14882611--14882663 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14882601 GTTGACTTAG
*
14882611 GCATATGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCATTCTAA
*
14882637 GCATACGGAGTTCATTCTCATTCTAA
1 GCATACGGAGTTCATTCCCATTCTAA
14882663 G
1 G
14882664 AGCGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.34
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCATTCTAA
Found at i:14884991 original size:20 final size:22
Alignment explanation
Indices: 14884968--14885008 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 22
14884958 GCCCCAGCGG
*
14884968 GGGTGCAAGC-TGAAG-TATTC
1 GGGTCCAAGCATGAAGCTATTC
14884988 GGGTCCAAGCATGAAGCTATT
1 GGGTCCAAGCATGAAGCTATT
14885009 ACACAGAAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
21 5 0.28
22 4 0.22
ACGTcount: A:0.27, C:0.17, G:0.32, T:0.24
Consensus pattern (22 bp):
GGGTCCAAGCATGAAGCTATTC
Found at i:14885068 original size:23 final size:24
Alignment explanation
Indices: 14885042--14885092 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
14885032 AGAGAGTGAA
14885042 ACCATAAG-CGGGATGGTCAGTGG
1 ACCATAAGTCGGGATGGTCAGTGG
* * * *
14885065 ACCATGAGTTGTGTTGGTCAGTGG
1 ACCATAAGTCGGGATGGTCAGTGG
14885089 ACCA
1 ACCA
14885093 GGAGTTCTCA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
23 7 0.30
24 16 0.70
ACGTcount: A:0.24, C:0.18, G:0.35, T:0.24
Consensus pattern (24 bp):
ACCATAAGTCGGGATGGTCAGTGG
Found at i:14885106 original size:24 final size:24
Alignment explanation
Indices: 14885054--14885109 Score: 76
Period size: 24 Copynumber: 2.3 Consensus size: 24
14885044 CATAAGCGGG
* * *
14885054 ATGGTCAGTGGACCATGAGTTGTG
1 ATGGTCAGTGGACCAGGAGTTCTC
*
14885078 TTGGTCAGTGGACCAGGAGTTCTC
1 ATGGTCAGTGGACCAGGAGTTCTC
14885102 ATGGTCAG
1 ATGGTCAG
14885110 AGGATCACGA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.20, C:0.16, G:0.36, T:0.29
Consensus pattern (24 bp):
ATGGTCAGTGGACCAGGAGTTCTC
Found at i:14891784 original size:529 final size:522
Alignment explanation
Indices: 14890922--14892110 Score: 1437
Period size: 529 Copynumber: 2.3 Consensus size: 522
14890912 AGCAGGACCC
* * *
14890922 ACAGCGGGATTGACAGC-ACA-TAGAGGGGGATCGGGTCGATCC-TCAGCTTGCACATTCTGCCT
1 ACAGCGGGATCGACAGCAACAGTAGAGGGGGATCGGGCCGATCCTTCAGCTTGCACATCCTGCCT
** * * * **
14890984 CTCTGGCTGGCTGAACGCCCGTACATTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCC
66 CTCCAGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCC
* * * * *
14891049 TAGTCTAAGCAAGTCTCATTCATTCCCAGTCTAAGATCTGACTTGACCGACAGTAAGACCAGTAG
131 CAGTCTAAGCAAGTCTCATTCATTCCCAGTCTAAGACCAGACTGGACCGACAGT-AGACCAGCAG
* * * *
14891114 TAGGATCGACAGCATGCAGGGACGGATCGAGCCGATCCCTGACTTGCGCATTCTACCTCTCTGGC
195 CAGGATCGACAGCATACAGGGACGGATCGAGCCGATCCCCGACTTGCGCATTCTACCTCTCCGGC
* * * * *
14891179 CGGTTGAGCATCCGTACCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAA
260 CGGTTAAGCACCCGCACCTAGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * ** **
14891244 GCCCCAGTCGGATCGAGGGCTGTGGCAGCGAGACCGGCAGCGAGATGGGTAGCACGTAGAGGGGG
325 GCCCCAGTCGGACCGAGGGCTGTGGCAGCGAGACCGACAGCGAGATCGACAGCACACAGAGGGGG
* * * * *
14891309 A-TCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCTATCGGCTCAGCACCCGCACGCTCGTT
390 ACT-GGATCGATCCCCAGCTTGCGCATTATGCCTCTCCGACCAGCTCAGCACCCGCACGCTCGTT
* * * *
14891373 TTATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTTATGCATACGGAGTTCATTCCCAATC
454 TCATGGGTTGACTTAGGCATACGGAGCTCATTCCCAG----T-C-TAAGCA--T-ATTCCCAATC
*
14891438 TAAGATCGGACAG
510 TAAGATCGAACAG
* * * *
14891451 ACAGCGAGATCGACAGCAACATGTAGAGGGGGATCGAGCCGATCCTTGA-CTTACACATCCTGCC
1 ACAGCGGGATCGACAGCAACA-GTAGAGGGGGATCGGGCCGATCCTTCAGCTTGCACATCCTGCC
* *
14891515 TCTCCAGTCGGCTGAGCGCCCGCACGCTCATTTTATGGGTTGACTTAGGCATACGGAGTTCATCC
65 TCTCCAGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCC
* ** * *
14891580 CCAGTCTAAGCAAGTCTCGTTCATTCCCAGTCTAAGACCAGA-TCGGACCGAGGGT-TA-CGGCA
130 CCAGTCTAAGCAAGTCTCATTCATTCCCAGTCTAAGACCAGACT-GGACCGACAGTAGACCAGCA
* * * *
14891642 GCAGGATCGGCAGCATACAGGG-GGGATTGGGCCGATCCCCGACTTGCGCATTCTACCTCTCCGG
194 GCAGGATCGACAGCATACAGGGACGGATCGAGCCGATCCCCGACTTGCGCATTCTACCTCTCCGG
* *
14891706 TCGGTTAAGCGCCCGCACGCTAGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
259 CCGGTTAAGCACCCGCAC-CTAGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
* *
14891771 AAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGAGACCGACAGCGAGATCGACAGCACACATAGGG
323 AAGCCCCAGTCGGACCGAGGGCTGTGGCAGCGAGACCGACAGCGAGATCGACAGCACACAGAGGG
* * **
14891836 GGACTGGATCGATCCTCAGCTTGCGCATTATTCCTCTCCGACCAGCTCAGCTTCCGCACGCTCGT
388 GGACTGGATCGATCCCCAGCTTGCGCATTATGCCTCTCCGACCAGCTCAGCACCCGCACGCTCGT
* *
14891901 TTCGTGGGTTGACTTAGGCATATGGAGCTCATTCCCAGTCTAAGCATATTCCCAATCTAAGATCG
453 TTCATGGGTTGACTTAGGCATACGGAGCTCATTCCCAGTCTAAGCATATTCCCAATCTAAGATCG
*
14891966 AACTG
518 AACAG
** * *
14891971 ACAATGGGATCGACAGCAATGC-GTAGAAGGGGATCGGGCCGAT-CTTCAGCTTGCACATCCTAC
1 ACAGCGGGATCGACAGCAA--CAGTAGAGGGGGATCGGGCCGATCCTTCAGCTTGCACATCCTGC
* * * * * * * *
14892034 CTCTCCAGCCGGTTGAGTGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATGCAGAGTTCATT
64 CTCTCCAGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATC
*
14892099 CTCAGTCTAAGC
129 CCCAGTCTAAGC
14892111 CCCAACCGGA
Statistics
Matches: 564, Mismatches: 86, Indels: 29
0.83 0.13 0.04
Matches are distributed among these distances:
519 4 0.01
520 134 0.24
521 1 0.00
522 1 0.00
523 4 0.01
524 1 0.00
525 1 0.00
528 50 0.09
529 225 0.40
530 5 0.01
531 1 0.00
532 135 0.24
533 2 0.00
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.24
Consensus pattern (522 bp):
ACAGCGGGATCGACAGCAACAGTAGAGGGGGATCGGGCCGATCCTTCAGCTTGCACATCCTGCCT
CTCCAGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCC
CAGTCTAAGCAAGTCTCATTCATTCCCAGTCTAAGACCAGACTGGACCGACAGTAGACCAGCAGC
AGGATCGACAGCATACAGGGACGGATCGAGCCGATCCCCGACTTGCGCATTCTACCTCTCCGGCC
GGTTAAGCACCCGCACCTAGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
CCCCAGTCGGACCGAGGGCTGTGGCAGCGAGACCGACAGCGAGATCGACAGCACACAGAGGGGGA
CTGGATCGATCCCCAGCTTGCGCATTATGCCTCTCCGACCAGCTCAGCACCCGCACGCTCGTTTC
ATGGGTTGACTTAGGCATACGGAGCTCATTCCCAGTCTAAGCATATTCCCAATCTAAGATCGAAC
AG
Found at i:14893159 original size:195 final size:197
Alignment explanation
Indices: 14892801--14893185 Score: 454
Period size: 195 Copynumber: 2.0 Consensus size: 197
14892791 GCCATACGGA
* * ** ** **
14892801 GTTCATTCCCAGTCTAAGATCAGACTGGATTGAGGGTTACGGTAGCTGGACCCGCAGCGAGATCG
1 GTTCATTCCCAGTCTAAGATCAGACTGGATCGAAGGTTACGACAGCAAGACCAACAGCGAGATCG
* * ** * * * * * *
14892866 ACAGCACGCAGAGGGGGATCGGGCCGATCTTCGGCTTGCACATTTTGCTTTTCTGGCTGGCTGAA
66 ACAACACGCAGAGGGGGATCGAGCCGATCCCCGACTTGCACATTCTGCCTCTCCGGCCGGCTGAA
** *
14892931 CGCCCGTACACTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATCCCCA-GTCTAAGCAAGT
131 CGCCCACACACTCATTTTGTGGGTTGACTTAGGCATACAGAGTTCAT-CCCATGTCTAAGCAAGT
14892995 CTT
195 CTT
*
14892998 GTTCATTCCCAGTCTAAGATCAGACTTGA-CGAAGGTTACGACAGCAAGACCAACAGC-AGGATC
1 GTTCATTCCCAGTCTAAGATCAGACTGGATCGAAGGTTACGACAGCAAGACCAACAGCGA-GATC
* * *
14893061 GACAACACGCAG-GGGGGATCGAGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGTTGA
65 GACAACACGCAGAGGGGGATCGAGCCGATCCCCGACTTGCACATTCTGCCTCTCCGGCCGGCTGA
* * * * *
14893125 GCGCCCACACGCTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
130 ACGCCCACACACTCATTTTGTGGGTTGACTTAGGCATACAGAGTTCATCCCATGTCTAAGC
14893186 CCCAGTCGGA
Statistics
Matches: 156, Mismatches: 30, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
194 3 0.02
195 90 0.58
196 35 0.22
197 28 0.18
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (197 bp):
GTTCATTCCCAGTCTAAGATCAGACTGGATCGAAGGTTACGACAGCAAGACCAACAGCGAGATCG
ACAACACGCAGAGGGGGATCGAGCCGATCCCCGACTTGCACATTCTGCCTCTCCGGCCGGCTGAA
CGCCCACACACTCATTTTGTGGGTTGACTTAGGCATACAGAGTTCATCCCATGTCTAAGCAAGTC
TT
Found at i:14893381 original size:26 final size:26
Alignment explanation
Indices: 14893329--14893381 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14893319 GTTGACTTAG
* * *
14893329 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATATAA
14893355 GCATACGGAGTTCATTCCCAATATAA
1 GCATACGGAGTTCATTCCCAATATAA
14893381 G
1 G
14893382 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATATAA
Found at i:14894598 original size:196 final size:197
Alignment explanation
Indices: 14894215--14894599 Score: 454
Period size: 196 Copynumber: 2.0 Consensus size: 197
14894205 GCATACGGAG
* ** * *
14894215 TTCATTACCAGTCTAAGATCAGATCAGACTGAGGGTTGCGATAGCAGGACCCACAGCGGGAATGA
1 TTCATTACCAGTCTAAGATCAGACCAGACCAAGAGTTGCGATAGCAGGACCCACAGCAGGAATGA
* ** * * *
14894280 CAGCACGCAGAGGAGGACCGGGTCGATCCCCAACTTGTACATTCTACCTCTTTGTCCAACTGAGC
66 CAGCACACAGAGGAGGACCGGACCGATCCCCAACTTGCACATTCTACCTCTCTGGCCAACTGAGC
*
14894345 GCCCGCACGCTCATTTCGTAGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCAAGTCT
131 GCCCGCACGCTCATTTCATAGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCAAGTCT
14894410 CA
196 CA
* *
14894412 TTCATTCCCAGTCTAAGATCAGACCAGACCAAGAGTTGCGATAGCAGGA-CCAGTAGCAGG-ATC
1 TTCATTACCAGTCTAAGATCAGACCAGACCAAGAGTTGCGATAGCAGGACCCA-CAGCAGGAAT-
* * * ** * * **
14894475 GACAGCACATAG-GGGGGATCGGACCGATCCCTGACTTGCGCATTCTGCCTCTCTGGCCGGCTGA
64 GACAGCACACAGAGGAGGACCGGACCGATCCCCAACTTGCACATTCTACCTCTCTGGCCAACTGA
* * * * * *
14894539 GGGCCCGCACGGTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGC
129 GCGCCCGCACGCTCATTTCATAGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGC
14894600 CCCAGTCGGA
Statistics
Matches: 156, Mismatches: 29, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
195 3 0.02
196 94 0.60
197 59 0.38
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (197 bp):
TTCATTACCAGTCTAAGATCAGACCAGACCAAGAGTTGCGATAGCAGGACCCACAGCAGGAATGA
CAGCACACAGAGGAGGACCGGACCGATCCCCAACTTGCACATTCTACCTCTCTGGCCAACTGAGC
GCCCGCACGCTCATTTCATAGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCAAGTCT
CA
Found at i:14897199 original size:197 final size:197
Alignment explanation
Indices: 14896861--14897225 Score: 509
Period size: 197 Copynumber: 1.9 Consensus size: 197
14896851 GGCATACGGA
** * * * * *
14896861 GTTCATTCCCAGTCTAAGATCGGATTGGATCGAGGGTTACGAGAGCAGGACCTGCAGCGGGATCG
1 GTTCATTCCCAGTCTAAGATCAAATTGGACCGAGGGTTACGACAGCAAGACCAGCAGCAGGATCG
* * * * *
14896926 GCAGCACGTAGAGGGGGACCGGGTCGATCCCCGGCTTGCACATTTTACCTCTCTGGCTGGTTGAG
66 ACAGCACGCAGAGGGGGACCGGGTCGATCCCCGACTTGCACATTCTACCTCTCTGACTGGTTGAG
* *
14896991 CGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACAAAGTTCGTCCCCAGTCTAAGCAAGTC
131 CACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAAAGTTCGTCCCCAGTCTAAGCAAGTC
14897056 TC
196 TC
*
14897058 GTTCATTCCCAGTCTAAGATCAAACTT-GACCGAGGGTTGCGACAGCAAGACCAGCAGCAGGATC
1 GTTCATTCCCAGTCTAAGATCAAA-TTGGACCGAGGGTTACGACAGCAAGACCAGCAGCAGGATC
* * * *
14897122 GACAGCACGCAGTGGGAGGACCGGGTCGATCCCTGACTTGCGCATTCTGCCTCTC-GACTGGTTG
65 GACAGCACGCAGAGGG-GGACCGGGTCGATCCCCGACTTGCACATTCTACCTCTCTGACTGGTTG
* *
14897186 AGCACCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATAC
129 AGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC
14897226 GGAGTTTATT
Statistics
Matches: 145, Mismatches: 21, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
197 110 0.76
198 35 0.24
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (197 bp):
GTTCATTCCCAGTCTAAGATCAAATTGGACCGAGGGTTACGACAGCAAGACCAGCAGCAGGATCG
ACAGCACGCAGAGGGGGACCGGGTCGATCCCCGACTTGCACATTCTACCTCTCTGACTGGTTGAG
CACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAAAGTTCGTCCCCAGTCTAAGCAAGTC
TC
Found at i:14897420 original size:26 final size:26
Alignment explanation
Indices: 14897391--14897443 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14897381 GTTGGCTTAG
*
14897391 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
14897417 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
14897443 G
1 G
14897444 ATCGGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:14898562 original size:47 final size:47
Alignment explanation
Indices: 14898509--14898603 Score: 172
Period size: 47 Copynumber: 2.0 Consensus size: 47
14898499 CAAGGGTTGC
*
14898509 GGTAGCAGGACCAGCAGCAGGATCAATAGCACGTAAGGAGGGATCGG
1 GGTAGCAGGACCAGCAGCAGGATCAATAGCACGCAAGGAGGGATCGG
*
14898556 GGTAGCAGGACCAGCAGCAGGATCGATAGCACGCAAGGAGGGATCGG
1 GGTAGCAGGACCAGCAGCAGGATCAATAGCACGCAAGGAGGGATCGG
14898603 G
1 G
14898604 CCGATCCCTG
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.31, C:0.20, G:0.40, T:0.09
Consensus pattern (47 bp):
GGTAGCAGGACCAGCAGCAGGATCAATAGCACGCAAGGAGGGATCGG
Found at i:14898879 original size:26 final size:26
Alignment explanation
Indices: 14898849--14898901 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14898839 GTTAACTTAG
* *
14898849 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
*
14898875 GCATACGGAGTTCACTCTCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
14898901 G
1 G
14898902 ATCGAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:14907147 original size:26 final size:26
Alignment explanation
Indices: 14907111--14907185 Score: 141
Period size: 26 Copynumber: 2.9 Consensus size: 26
14907101 GTTGACTTAG
14907111 GCATACAGAGTTCATTCCCAGTCCAA
1 GCATACAGAGTTCATTCCCAGTCCAA
*
14907137 GCATACGGAGTTCATTCCCAGTCCAA
1 GCATACAGAGTTCATTCCCAGTCCAA
14907163 GCATACAGAGTTCATTCCCAGTC
1 GCATACAGAGTTCATTCCCAGTC
14907186 TAAGATCAGA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.24
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCCAA
Found at i:14908900 original size:26 final size:26
Alignment explanation
Indices: 14908870--14908920 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
14908860 TGACTTAGGT
*
14908870 ATATGGAGTTCATTCCCAGTCTAAGC
1 ATATGGAGTTCATTCACAGTCTAAGC
14908896 ATATGGAGTTCATTCACAGTCTAAG
1 ATATGGAGTTCATTCACAGTCTAAG
14908921 ATTGAACAGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (26 bp):
ATATGGAGTTCATTCACAGTCTAAGC
Found at i:14909283 original size:171 final size:170
Alignment explanation
Indices: 14908778--14909414 Score: 516
Period size: 174 Copynumber: 3.7 Consensus size: 170
14908768 TCAGCCACAC
* * * * * * *
14908778 GCAGAGGGGGATCGGGTCGATCGC-CGACTTGCGTATTATGCCTCTCCGACCGACTCAGTGCCCA
1 GCAGAGGGGGACCGGGTCGATC-CTCGGCTTGCGCATCATGCCTCTCCGACCGGCTCAGCGCCCG
* ** *
14908842 CACGCTCGTTTCATGGGTTGACTTAGGTATATGGAGTTCATTCCCAGTCTAAGCATATGGAGTTC
65 CACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCAT-CGGAGTTC
* * * *
14908907 ATTCACAGTCTAAGAT-TGAACAGGCAGCGGGATCGGTAGCAGCAT
129 ATTCACAGTCTAAGATCAG-ACCGACAGCGGGAT---TGGCAGCAT
* * * * ** * *
14908952 GCAGAGGGGGACCGAGCCGATCCTCGACTTGCACATCCGGCCTCTCCGGCCGGCTGAGCGCCCGC
1 GCAGAGGGGGACCGGGTCGATCCTCGGCTTGCGCATCATGCCTCTCCGACCGGCTCAGCGCCCGC
* * * **
14909017 ACGCTCGTTTCATGGGTTGGCTTAGGCATACAAAGTTCATT-CCATGTTTAAGC--CCCAG-TCG
66 ACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAGCATCGGAGTTC-
** ** ** * * *
14909078 GATAGAGGGT-TGTGGCAGCGGGATCGACAGCGGGATTGGCAGCAT
129 -ATTCACAGTCT-AAG-ATC-AGACCGACAGCGGGATTGGCAGCAT
** * * * *
14909123 GCAGAGGAAGACCGGGTCAATCCTCGGCTTACGCATTATGCCTCTCCGATCGGCTCAGCGCCCGC
1 GCAGAGGGGGACCGGGTCGATCCTCGGCTTGCGCATCATGCCTCTCCGACCGGCTCAGCGCCCGC
14909188 ACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATGCGGAGTTCA
66 ACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCAT-CGGAGTTCA
* * * *
14909253 TTCCCAGTCTAAGATCAGACCGATAGCGGGATCGGCTGTAGCAC
130 TTCACAGTCTAAGATCAGACCGACAGCGGGATTGGC---AGCAT
* * * * * * * *
14909297 GTAGAGGGGGATCGGGTGGATCCTCGGCTTGCGCATCCTGCCTCTCC-AGCTGGTTGAGCGCTCG
1 GCAGAGGGGGACCGGGTCGATCCTCGGCTTGCGCATCATGCCTCTCCGA-CCGGCTCAGCGCCCG
* * * * * *
14909361 CATGCTCGTTTCGTGGGTTGACTTAGGCATGCGGAGTTCATTCTCGGTCTAAGC
65 CACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGC
14909415 CCCAATCGGA
Statistics
Matches: 359, Mismatches: 86, Indels: 36
0.75 0.18 0.07
Matches are distributed among these distances:
170 2 0.01
171 124 0.35
172 11 0.03
173 11 0.03
174 208 0.58
175 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (170 bp):
GCAGAGGGGGACCGGGTCGATCCTCGGCTTGCGCATCATGCCTCTCCGACCGGCTCAGCGCCCGC
ACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATCGGAGTTCAT
TCACAGTCTAAGATCAGACCGACAGCGGGATTGGCAGCAT
Found at i:14913950 original size:148 final size:145
Alignment explanation
Indices: 14913672--14913951 Score: 350
Period size: 148 Copynumber: 1.9 Consensus size: 145
14913662 AGATCGGTAA
* * * *
14913672 CGGGATCGATAGCACACAGATGGGGACCGGTCCGATCCCTGACTTACGTATTATGCCTCTTCGAT
1 CGGGATCGATAGCACACAGAGGGGGACCGGTCCGATCCCTGACTTACGCATCATGCCTCTCCGAT
* * *
14913737 CGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACTGAGTTCATTCTCGGTCTA
66 CGGCTCAGCACCCGCACGATCATTTCGTGGGTTGACTTAGGCATACTGAGTTCATTCTCGATCTA
14913802 AGATCAGACCGACAG
131 AGATCAGACCGACAG
*
14913817 CGGGATCGATAGCAGCACGCAGAGGGGGACCGTGT-CGAT-CCTCGACTTACGCATCCTGCCTCT
1 CGGGATCGATAGCA-CA--CAGAGGGGGACCG-GTCCGATCCCT-GACTTACGCATCATGCCTCT
* * ** * * *
14913880 CCGATCGGTTGAGCACCCTTACGATCGTTTTGTGGGTTGACTTTGGCATAC-GAAGTTCATTCTC
61 CCGATCGGCTCAGCACCCGCACGATCATTTCGTGGGTTGACTTAGGCATACTG-AGTTCATTCTC
14913944 GATCTAAG
125 GATCTAAG
14913952 CCCCAATTGG
Statistics
Matches: 114, Mismatches: 15, Indels: 9
0.83 0.11 0.07
Matches are distributed among these distances:
145 14 0.12
146 2 0.02
147 4 0.04
148 92 0.81
149 2 0.02
ACGTcount: A:0.20, C:0.28, G:0.27, T:0.26
Consensus pattern (145 bp):
CGGGATCGATAGCACACAGAGGGGGACCGGTCCGATCCCTGACTTACGCATCATGCCTCTCCGAT
CGGCTCAGCACCCGCACGATCATTTCGTGGGTTGACTTAGGCATACTGAGTTCATTCTCGATCTA
AGATCAGACCGACAG
Found at i:14916586 original size:846 final size:849
Alignment explanation
Indices: 14914941--14916708 Score: 2419
Period size: 846 Copynumber: 2.1 Consensus size: 849
14914931 TGACCGACTC
*
14914941 AGTGCCCG-CACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
1 AGTGCCCGTC-CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* ** * * *
14915005 AGACCGGCAGTGGGATTGATAGCAGCACGCAGAGGGGGATCAGACCGATCCTCGGCTTGCGTATC
65 -GACCAGCAGCAGGATCGACAGCAGCACGCAGAGGGGGATCAGACCGATCCTCGGCTTGCGCATC
* * * *
14915070 CTACCTCTCCGACCGACTGAACGCCCGTACGATCATTTTGTGGGTTGACTTTGGCATGCGGAGTT
129 CTACCTCTCCGACCGACTGAACGCAC--ACGATCA---T-TGGGTTGACTTAGGCATACAGAGTT
* * *
14915135 CATTCTCGGTCTAAGCCCCAACCGGACCGAGGGACCCATAACAGGATCGACAGCACACAGAGGGG
188 CATTCCCGGCCTAAGCCCCAACCGGACCGAGAGACCCATAACAGGATCGACAGCACACAGAGGGG
* * * *
14915200 GGCCGAGCCGATCCTCGGCTTGTGCATTCTGGCTCTCCAACCGGCTGAGCACCGTACGCTCGTTT
253 GGCAGAGCCGATCCTCGGCTTGCGCACTCTGGCTCTCCAACCGGCTGAGCACCGGACGCTCGTTT
*
14915265 CATAGGTTGACTTAGGCATACGTGGTGCATTCCCGGTCTCAACCAACCAAGGGCCAAAGGCTATC
318 CATAGGTTGACTTAGGCATACGTAGTGCATTCCCGGTCTCAACCAACCAAGGGCCAAAGGCTATC
** *
14915330 GAGAACCTATCTTTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACTCCCTTAA
383 GAGAACCTATCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAA
14915395 AGAGCATTTGAGATTTTATAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGAACACTT
448 AGAGCATTTGAGATTTTATAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGAACACTT
*
14915460 TTTTCAAACAATCACAAAATCTTCTCCACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAA
513 TTTTCAAACAATCACAAAATCTTCTCCACTTCGAGTTTTTAGCTGAATTGTTTTATGCATGCCAA
* * *
14915525 AAAAAATACAAGGATGATTTCTACTAAATTTGGGGCTAAAAATCCTTCTAAAAAATTTTAAAAAA
578 AAAAAATACAAGGATGATGTCTACCAAATTTGGGGCCAAAAATCCTTCTAAAAAATTTTAAAAAA
* *
14915590 TCTAGAACCGTAAAAAGTTTCAAAAATCGTAAAAAATAGAAAACGGGTCGTCTTGCCACGAAACT
643 TCTAGAACCGTAAAAAGTTTCAAAAATCATAAAAAATAGAAAACGGGTCGCCTTGCCACGAAACT
* * * *
14915655 TCACATGAAGGCTAGGGGACCATATGGTATGAATTTTAAAGCCATAAAATGGCATGGCATGGCAG
708 TCACACGAAGGCTAGGGGACCATATGGTACGAATTTTAAAGCCATAAAATGGCATGGCACGACAG
*
14915720 AAATTGAAGATGATTGCCTGAACCCACCTATCA-CTGATCGAAT-CACGACTTGCCGCATCCCGC
773 AAATTGAAGATGA-TGCCTGAACCCACCTATCACCCGATCG-ATCCACGACTTG-CGCATCCCGC
* * *
14915783 CTCTCTAGTCGGCGT
835 CTCTATAGCCGACGT
14915798 AGTGCCCGTCCGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
1 AGTGCCCGTCCGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
* ** * *
14915863 TACTAGCAGCAGGATCGACATTAGCACGCAGAGGGGGATCAGGCTGATCCTCGGCTTGCGCATCC
66 -ACCAGCAGCAGGATCGACAGCAGCACGCAGAGGGGGATCAGACCGATCCTCGGCTTGCGCATCC
*
14915928 TACCTCTCCGATCGACTG-A-GCA-ACCG-T-A-T-GGTTGACTTAGGCATACAGAGTTCATTCC
130 TACCTCTCCGACCGACTGAACGCACA-CGATCATTGGGTTGACTTAGGCATACAGAGTTCATTCC
* * * ** * *
14915986 CGGCCTAAGCTCCAACCGGACTGAGAGACCCGT-AGTGAGATCGACAGCACGCAGAAGGGGGTCA
194 CGGCCTAAGCCCCAACCGGACCGAGAGACCCATAACAG-GATCGACAGCACACAG-AGGGGGGCA
* * * * ** * *
14916050 G-GTCGATCCTCGGCTTGCGTACTCTGGCTCTTCGATTGGCTGAGCGCTCGGACGCTCGTTTTAT
257 GAGCCGATCCTCGGCTTGCGCACTCTGGCTCTCCAACCGGCTGAGCAC-CGGACGCTCGTTTCAT
* * * *
14916114 GGGTTGACTTAGGCATACGTAGTGTATTCCCGGTCTCAACCAACCATGGGCCAAAGGCTATGGAG
321 AGGTTGACTTAGGCATACGTAGTGCATTCCCGGTCTCAACCAACCAAGGGCCAAAGGCTATCGAG
14916179 AACCTATCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCT-AGAACTCACACCCCCTTATAA
386 AACCTATCCCTTATATTGGCCCCCTATCCCTCATCAAACCT-TGAGAACTCACACCCCCTTA-AA
*
14916243 -AGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATTGGG-ACAC-T
449 GAGCATTTGAGATTTTATAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAA-TGGGAACACTT
*** *
14916305 TTTTCAAATGGTCACAAAATCTTCTCCACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAA
513 TTTTCAAACAATCACAAAATCTTCTCCACTTCGAGTTTTTAGCTGAATTGTTTTATGCATGCCAA
* * * *
14916370 TAAAAATACAAGGATCG-TGTGTACCAGATTTGGGGCCAAAACTCCTTCTAAAAAAATTTTAAAA
578 AAAAAATACAAGGAT-GATGTCTACCAAATTTGGGGCCAAAAATCCTTCT-AAAAAATTTTAAAA
* * * *
14916434 AATCCT-GAATCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGGGTCGCCTTGCCATGAA
641 AAT-CTAGAACCGTAAAAAGTTTCAAAAATCATAAAAAATAGAAAACGGGTCGCCTTGCCACGAA
14916498 ACTTCACACGAAGGCTTAGGGGACCAT-T-GTACGAA-TTTACAAGCCATAAAAATGGCATTGGC
705 ACTTCACACGAAGGC-TAGGGGACCATATGGTACGAATTTTA-AAGCCAT-AAAATGGCA-TGGC
*
14916560 ACGACAGAAATATGAAGTTG-TGCCTGAACCCACCTATCACCCGATCGATCCACGACTTGCGCAT
766 ACGACAGAAAT-TGAAGATGATGCCTGAACCCACCTATCACCCGATCGATCCACGACTTGCGCAT
*
14916624 CCCGCCTCTATGGCCGACGT
830 CCCGCCTCTATAGCCGACGT
* * * *
14916644 AGTGCCCGTCCGCTCGTTCCATGGGTTGACTTAGGCATACGAAGTTTATTCCCAGTCTAAGATCG
1 AGTGCCCGTCCGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
14916709 GATCGGATCG
Statistics
Matches: 812, Mismatches: 80, Indels: 49
0.86 0.09 0.05
Matches are distributed among these distances:
844 6 0.01
845 219 0.27
846 391 0.48
847 48 0.06
848 7 0.01
851 1 0.00
852 2 0.00
853 2 0.00
855 2 0.00
856 2 0.00
857 131 0.16
858 1 0.00
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.26
Consensus pattern (849 bp):
AGTGCCCGTCCGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
ACCAGCAGCAGGATCGACAGCAGCACGCAGAGGGGGATCAGACCGATCCTCGGCTTGCGCATCCT
ACCTCTCCGACCGACTGAACGCACACGATCATTGGGTTGACTTAGGCATACAGAGTTCATTCCCG
GCCTAAGCCCCAACCGGACCGAGAGACCCATAACAGGATCGACAGCACACAGAGGGGGGCAGAGC
CGATCCTCGGCTTGCGCACTCTGGCTCTCCAACCGGCTGAGCACCGGACGCTCGTTTCATAGGTT
GACTTAGGCATACGTAGTGCATTCCCGGTCTCAACCAACCAAGGGCCAAAGGCTATCGAGAACCT
ATCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATT
TGAGATTTTATAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGAACACTTTTTTCAAA
CAATCACAAAATCTTCTCCACTTCGAGTTTTTAGCTGAATTGTTTTATGCATGCCAAAAAAAATA
CAAGGATGATGTCTACCAAATTTGGGGCCAAAAATCCTTCTAAAAAATTTTAAAAAATCTAGAAC
CGTAAAAAGTTTCAAAAATCATAAAAAATAGAAAACGGGTCGCCTTGCCACGAAACTTCACACGA
AGGCTAGGGGACCATATGGTACGAATTTTAAAGCCATAAAATGGCATGGCACGACAGAAATTGAA
GATGATGCCTGAACCCACCTATCACCCGATCGATCCACGACTTGCGCATCCCGCCTCTATAGCCG
ACGT
Found at i:14917248 original size:26 final size:26
Alignment explanation
Indices: 14917218--14917270 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14917208 GTTAACTTAG
14917218 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* * *
14917244 GCATACGGGGTTCCTTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
14917270 G
1 G
14917271 ATTGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:14918702 original size:704 final size:703
Alignment explanation
Indices: 14917344--14918753 Score: 2094
Period size: 704 Copynumber: 2.0 Consensus size: 703
14917334 ACATCCTGCC
* * *
14917344 TCTCCGACCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTC
1 TCTCCGACCGGTTAAGCGCCCGCACGCTCGTTTCCTGGGTTCACTTAGGCATACAGAGTTCATTC
* * * *
14917409 CCGGTCTAAGCCCCAATCGGACCGAGGGACCCACAGCGGGATCGACATCACACAGAGGGAGGTCG
66 CCGATCTAAGCCCCAACCGGACCGAGGGACCCACAGCAGGATCGAAATCACACAGAGGGAGGTCG
* * * * *
14917474 GGCCAATCCTCAGCTTGGACATTCTGGCTCTCTGGTCGGCTGAGTGCCCGCACGCTCGTTTGATG
131 AGCCAATCCTCAGCTTGGACATTCTGGCTCTCCGATCGACTGAGTGCCCGCACGCTCGTTTCATG
*
14917539 GGTTGACTTAGGCATACGTAGTGCATTCTCGGTCTCAACCAACCAAGGGCCAGAGGCTATCGAGA
196 GGTTGACTTAGGCATACGTAGTGCATTCCCGGTCTCAACCAACCAAGGGCCAGAGGCTATCGAGA
* * *
14917604 ACCTATCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCGAGAACTCACACCACCTTAAAGAG
261 ACCTATCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAACAACTCACACCACCTTAAAGAG
* *
14917669 CATTTGAGATTTTATAGGTTTGCTGCCATTAGCCATTAAAGTGTCTGAGATGGGGACACTTTTTT
326 CATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* *
14917734 CAAACGGTCACAAAATCTTCCGCACCTCGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAACAAA
391 CAAACGGTCAAAAAATCTTCCG-ACCTCGAGTTTTTAGCTGAAATTTTTTATGCATGCCAACAAA
* *
14917799 AACACAAGGATCATGTCTACGAAATTTGGGGCCAATACTCCTTCTAAAAAAATTTTAAAAAATCC
455 AACACAAGGATCATGTCTACCAAATTTGGGGCCAAAACTCCTTCTAAAAAAATTTTAAAAAATCC
* ** * * * *
14917864 CGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAAGGGGTCGTCTTGCCACGAAATTTCA
520 CGAACCGCAAAAAGTTTCAAAAATCGTGAAAAACAGAAAACGGGTCATCTTGCCACGAAACTTCA
* *
14917929 CATGAAGGCTTAGGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTGGCATAGTAGAA
585 CATGAAGGCTTAGGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTGGCACAGCAGAA
* *
14917994 ATATGAAGATGTGCTTGAACCCACCTATCA-TCCGATCGATCCACGACTTGCACA
650 ATATGAAGATGTGCCTAAACCCACCTATCACT-CGATCGATCCACGACTTGCACA
* * * * *
14918048 TCTCCGATCGGTTAAGCGCCCGCACGGTCGTTTCCTTGGTTCATTTAGGCATGCAGAGTTCATTC
1 TCTCCGACCGGTTAAGCGCCCGCACGCTCGTTTCCTGGGTTCACTTAGGCATACAGAGTTCATTC
* * ** * *
14918113 TCGATCTAAGCCCCAACCGGATCGAGGGACCCGTAGCAGGATCGAAAGT-ACATAGAGGGGGGTC
66 CCGATCTAAGCCCCAACCGGACCGAGGGACCCACAGCAGGATCGAAA-TCACACAGAGGGAGGTC
** * * * * * *
14918177 GAGCTGATCCTCGGCTTATG-CGTTCTGGCTCTCCGATCGACTGAGTGCCGGTATGCTCGTTTCA
130 GAGCCAATCCTCAGCTT-GGACATTCTGGCTCTCCGATCGACTGAGTGCCCGCACGCTCGTTTCA
*
14918241 TGGGTTGACTTAGGCATACGTAGTGCATTCCCGGTCTCGACCAACCAAGGGCCAGAGGCTATCGA
194 TGGGTTGACTTAGGCATACGTAGTGCATTCCCGGTCTCAACCAACCAAGGGCCAGAGGCTATCGA
*
14918306 GAACCTATCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAACAACTCACACCCCCTTAAAG
259 GAACCTATCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAACAACTCACACCACCTTAAAG
**
14918371 AGCATTTGAGATTTTATAGGTTTGCTGTTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
324 AGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * * *
14918436 TTCAAATGGTTAAAAAATCTTCTCTG-CTTCGAGTTTTTAG-TAGAATTTTTTTATGCATGCCAA
389 TTCAAACGGTCAAAAAATCTTC-C-GACCTCGAGTTTTTAGCT-GAAATTTTTTATGCATGCCAA
* * * *
14918499 CAAAAATACAAGGATCATGTCTACCAAATTTGGGGCTAAAAGTCTTTCTAAAAAAATTTTAAAAA
451 CAAAAACACAAGGATCATGTCTACCAAATTTGGGGCCAAAACTCCTTCTAAAAAAATTTTAAAAA
14918564 ATCCCGAACCGC-AAAAGATTTCAAAAATCGTGAAAAACAGAAAACGGGTCATCTTGCCACGAAA
516 ATCCCGAACCGCAAAAAG-TTTCAAAAATCGTGAAAAACAGAAAACGGGTCATCTTGCCACGAAA
* *
14918628 CTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGG
580 CTTCACATGAAGGCTTAGGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTGGCACAG
* *
14918693 CATAAATATGAAGATGTGCCTAAACCCACCTATCACTCGATCGATCCACGACTTGCGCA
645 CAGAAATATGAAGATGTGCCTAAACCCACCTATCACTCGATCGATCCACGACTTGCACA
14918752 TC
1 TC
14918754 CCGTCTCTCT
Statistics
Matches: 631, Mismatches: 68, Indels: 14
0.88 0.10 0.02
Matches are distributed among these distances:
703 6 0.01
704 620 0.98
705 4 0.01
706 1 0.00
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (703 bp):
TCTCCGACCGGTTAAGCGCCCGCACGCTCGTTTCCTGGGTTCACTTAGGCATACAGAGTTCATTC
CCGATCTAAGCCCCAACCGGACCGAGGGACCCACAGCAGGATCGAAATCACACAGAGGGAGGTCG
AGCCAATCCTCAGCTTGGACATTCTGGCTCTCCGATCGACTGAGTGCCCGCACGCTCGTTTCATG
GGTTGACTTAGGCATACGTAGTGCATTCCCGGTCTCAACCAACCAAGGGCCAGAGGCTATCGAGA
ACCTATCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAACAACTCACACCACCTTAAAGAG
CATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
CAAACGGTCAAAAAATCTTCCGACCTCGAGTTTTTAGCTGAAATTTTTTATGCATGCCAACAAAA
ACACAAGGATCATGTCTACCAAATTTGGGGCCAAAACTCCTTCTAAAAAAATTTTAAAAAATCCC
GAACCGCAAAAAGTTTCAAAAATCGTGAAAAACAGAAAACGGGTCATCTTGCCACGAAACTTCAC
ATGAAGGCTTAGGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTGGCACAGCAGAAA
TATGAAGATGTGCCTAAACCCACCTATCACTCGATCGATCCACGACTTGCACA
Found at i:14919362 original size:26 final size:26
Alignment explanation
Indices: 14919332--14919384 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14919322 GTTAACTTAG
*
14919332 GCATACTGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
14919358 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
14919384 G
1 G
14919385 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:14922001 original size:25 final size:25
Alignment explanation
Indices: 14921967--14922022 Score: 96
Period size: 25 Copynumber: 2.2 Consensus size: 25
14921957 GTTGACTTAG
14921967 GCATACGGAGTTCATTCCCAGTCTAA
1 GCAT-CGGAGTTCATTCCCAGTCTAA
14921993 GCATCGGAGTTCATTCCCAGTCTAA
1 GCATCGGAGTTCATTCCCAGTCTAA
14922018 G-ATCG
1 GCATCG
14922023 AACCGGCAGC
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
24 4 0.13
25 22 0.73
26 4 0.13
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (25 bp):
GCATCGGAGTTCATTCCCAGTCTAA
Found at i:14923416 original size:26 final size:26
Alignment explanation
Indices: 14923376--14923428 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14923366 GTTGACTTAG
14923376 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
* * *
14923402 GCATACGTAGTTCATTTCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
14923428 G
1 G
14923429 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:14927438 original size:26 final size:26
Alignment explanation
Indices: 14927402--14927454 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14927392 GTTGACTTAG
* *
14927402 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
14927428 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
14927454 G
1 G
14927455 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:14928553 original size:12 final size:12
Alignment explanation
Indices: 14928536--14928561 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
14928526 GGGTTATGAT
14928536 AGTAGGACCAAC
1 AGTAGGACCAAC
14928548 AGTAGGACCAAC
1 AGTAGGACCAAC
14928560 AG
1 AG
14928562 CATGCAGGGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.23, G:0.27, T:0.08
Consensus pattern (12 bp):
AGTAGGACCAAC
Found at i:14928843 original size:26 final size:26
Alignment explanation
Indices: 14928813--14928865 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14928803 GTTGACTTAG
14928813 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATATGAAGTTCATTCCCAGTCTAA
* * *
14928839 GCATATGGAGTTCATTCCTATTCTAA
1 GCATATGAAGTTCATTCCCAGTCTAA
14928865 G
1 G
14928866 AGTGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.34
Consensus pattern (26 bp):
GCATATGAAGTTCATTCCCAGTCTAA
Found at i:14930043 original size:197 final size:198
Alignment explanation
Indices: 14929703--14930090 Score: 462
Period size: 197 Copynumber: 2.0 Consensus size: 198
14929693 GGCATACGGA
* * * ** *
14929703 GTTCATTCCCAGTCTAAGATTGGATCGGATCGAGGGTTACGGTAGCAGGACCAGTAACAGGGATC
1 GTTCATTCCCAATCTAAGATCGGATCGGACCGAGGGTTACAATAGCAGGACCAGCAACAGGGATC
* * * *
14929768 GATAGCATACAAAAGGGGACCGGGCCGATCCTCGGCTTGCACATTCTACCTCTCTGGCCGGTTGA
66 GATAGCACACAAAAGGGGACCGAGCCGATCCTCGACTTGCACATTCTACCTCTCTGACCGGTTGA
* *
14929833 GCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCA-GTCTAAGCAAGT
131 GCACCCACACGCTCATTTCGTGGGTTGACTAAGGCATACAGAGTTCATCCCATGTCTAAGCAAGT
14929897 CTC
196 CTC
* *
14929900 GTTCATTCCCAATCTAAGATCGGA-CTGGACCGAGGGATTGCAATAGCAGGACCAGCAGCA-GGA
1 GTTCATTCCCAATCTAAGATCGGATC-GGACCGAGGG-TTACAATAGCAGGACCAGCAACAGGGA
* ** * * *
14929963 TTGATAGCACAC-AGGGAGGGACCGAGTCGATTCC-CGACTTGCGCATTCTGCCTCTCTGACCGG
64 TCGATAGCACACAAAAG-GGGACCGAGCCGA-TCCTCGACTTGCACATTCTACCTCTCTGACCGG
* * * * * * *
14930026 TTGAGCGCCCACACGCTCGTTTTGTGGGTTGGCTAAGGGATACGGAGTTCATTCCATGTCTAAGC
127 TTGAGCACCCACACGCTCATTTCGTGGGTTGACTAAGGCATACAGAGTTCATCCCATGTCTAAGC
14930091 CCCAGTCGAA
Statistics
Matches: 159, Mismatches: 27, Indels: 9
0.82 0.14 0.05
Matches are distributed among these distances:
196 3 0.02
197 127 0.80
198 29 0.18
ACGTcount: A:0.23, C:0.26, G:0.28, T:0.23
Consensus pattern (198 bp):
GTTCATTCCCAATCTAAGATCGGATCGGACCGAGGGTTACAATAGCAGGACCAGCAACAGGGATC
GATAGCACACAAAAGGGGACCGAGCCGATCCTCGACTTGCACATTCTACCTCTCTGACCGGTTGA
GCACCCACACGCTCATTTCGTGGGTTGACTAAGGCATACAGAGTTCATCCCATGTCTAAGCAAGT
CTC
Found at i:14931675 original size:26 final size:26
Alignment explanation
Indices: 14931646--14931698 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14931636 GTTGACTTAG
* *
14931646 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
14931672 GCATACGAAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
14931698 G
1 G
14931699 ATTAGACTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:14937397 original size:196 final size:197
Alignment explanation
Indices: 14937059--14937443 Score: 490
Period size: 196 Copynumber: 2.0 Consensus size: 197
14937049 GCATACGGAG
* * * * * * *
14937059 TTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTTTCGATAGTAGGACCCGTAGCGGGATCGA
1 TTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGCTGCGACAGCAGGACCAGCAGCAGGATCGA
* * * *
14937124 CAGCACGTAGAGGGGGACCGGGTTGATCCCCGACTTACACATTCTGCCTCTCTGGCCGGTTGAGC
66 CAGCACGCAGAGAGGGACCGGGTTGATCCCCGACTTACACATTCTGCCTCTCTGCCCAGTTGAGC
* * * *
14937189 ATCCATACGCTCGTTTCGTG-TGTTGACTTAGGTATACGGAGTTCATCCCCA-GTCTAAGCAAGT
131 ACCCACACGCTCGTTTCATGCT-TTGACTTAGGCATACGGAGTTCAT-CCCATGTCTAAGCAAGT
14937252 CTCA
194 CTCA
* * *
14937256 TTCATTCCCAGTCTAAGATTGGATCGGGTCGAGGGCTGCGACAGCAGGACCAGCAGCAGGATC-A
1 TTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGCTGCGACAGCAGGACCAGCAGCAGGATCGA
* *
14937320 GCAGCACGCAG-GAGGGACCGGGTTGATCCCCGACTTACGCATTCTGGCTCTCTGCCCAGTTGAG
66 -CAGCACGCAGAGAGGGACCGGGTTGATCCCCGACTTACACATTCTGCCTCTCTGCCCAGTTGAG
* * * * *
14937384 CGCCCGCACGCTCGTTTCATGCTTTGGCTTAGGCATACGGGGTTCATTCCATGTCTAAGC
130 CACCCACACGCTCGTTTCATGCTTTGACTTAGGCATACGGAGTTCATCCCATGTCTAAGC
14937444 CCCAGCCGGA
Statistics
Matches: 160, Mismatches: 25, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
195 3 0.02
196 94 0.59
197 63 0.39
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.24
Consensus pattern (197 bp):
TTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGCTGCGACAGCAGGACCAGCAGCAGGATCGA
CAGCACGCAGAGAGGGACCGGGTTGATCCCCGACTTACACATTCTGCCTCTCTGCCCAGTTGAGC
ACCCACACGCTCGTTTCATGCTTTGACTTAGGCATACGGAGTTCATCCCATGTCTAAGCAAGTCT
CA
Found at i:14937604 original size:26 final size:26
Alignment explanation
Indices: 14937575--14937627 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14937565 GTTAACTTAG
14937575 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
14937601 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
14937627 G
1 G
14937628 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:14939031 original size:26 final size:26
Alignment explanation
Indices: 14938995--14939047 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14938985 GTTGACTTAG
**
14938995 GCATACGGAGTTCATTCTTAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
14939021 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
14939047 G
1 G
14939048 ATAGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:14940238 original size:196 final size:194
Alignment explanation
Indices: 14939882--14940241 Score: 481
Period size: 196 Copynumber: 1.8 Consensus size: 194
14939872 GTATACGGAG
* * * *
14939882 TTCATTCCAGTCTAAGATCTGATCGGATCAAGGGTTGTGGTAGTAGGACCCATAGCAGGATCGAC
1 TTCATTCCAGTCTAAGATCAGATCGGATCAAGGGTTGCGGTAGTAGGACCAACAGCAGGATCGAC
* ** * * *
14939947 AGCACGCAAAGGGAGACCGGGTCGATCCCCGACTTGTACATTTTGCCTCTCTGGTCGGCTGAGCG
66 AGCACGC-AAGGGAGACCGGCTCGATCCCCGACTTACACATTCTACCTCTCTGGTCGGCTGAGCA
*
14940012 CCTGCACGCTCATTTCGTGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATGTCTCA
130 CCTGCACGCTCATTTCATGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATGTCTCA
* *
14940077 TTCATTCCTAGTCTAAGATCAGATCGGATCGAGGGTTGCGGTAGTAGGACCAACAGCAGGATCGG
1 TTCATTCC-AGTCTAAGATCAGATCGGATCAAGGGTTGCGGTAGTAGGACCAACAGCAGGATCGA
** * * *
14940142 TTGCACGC-AGGAGGGACCGAGCT-GATCCCTGACTTACACATTCTACCTCTCTGGTCGGTTGAG
65 CAGCACGCAAGG-GAGACCG-GCTCGATCCCCGACTTACACATTCTACCTCTCTGGTCGGCTGAG
* *
14940205 CACCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATA
128 CACCTGCACGCTCATTTCAT-GGTTGACTTAGGCATA
14940242 CAAAGTTCAT
Statistics
Matches: 141, Mismatches: 20, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
194 3 0.02
195 65 0.46
196 73 0.52
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.26
Consensus pattern (194 bp):
TTCATTCCAGTCTAAGATCAGATCGGATCAAGGGTTGCGGTAGTAGGACCAACAGCAGGATCGAC
AGCACGCAAGGGAGACCGGCTCGATCCCCGACTTACACATTCTACCTCTCTGGTCGGCTGAGCAC
CTGCACGCTCATTTCATGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATGTCTCA
Found at i:14940444 original size:26 final size:26
Alignment explanation
Indices: 14940408--14940460 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14940398 GTTGACTTAG
14940408 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
14940434 GCATATGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14940460 G
1 G
14940461 ATCGGACCTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14941864 original size:26 final size:26
Alignment explanation
Indices: 14941834--14941883 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
14941824 AACTTAGGCA
*
14941834 TATGGAGTTCATTCCTAGTCTAAGCC
1 TATGGAGTTCATTCCCAGTCTAAGCC
14941860 TATGGAGTTCATTCCCAGTCTAAG
1 TATGGAGTTCATTCCCAGTCTAAG
14941884 ATCGGACCGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.34
Consensus pattern (26 bp):
TATGGAGTTCATTCCCAGTCTAAGCC
Found at i:14950840 original size:26 final size:26
Alignment explanation
Indices: 14950810--14950859 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
14950800 AACTTAGGCA
*
14950810 TACGGAGTTCATTCCTAGTCTAAGCC
1 TACGGAGTTCATTCCCAGTCTAAGCC
14950836 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
14950860 ATCGGACCGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCC
Found at i:14958684 original size:45 final size:45
Alignment explanation
Indices: 14958598--14959139 Score: 353
Period size: 45 Copynumber: 12.1 Consensus size: 45
14958588 CCATACCAGA
** * * * *
14958598 TCGAGGCAAGTGCCCACACCAA-GGCCGGCATGTGTCGATGGTGT
1 TCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGTCGATGGTGG
* * * * *
14958642 TCGAAGCAACTGCCCGCACCAGGGGCCATCTTCTGTCGATGGTGG
1 TCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGTCGATGGTGG
** * * * *
14958687 TCGAGGCAAGAGCCTGCACCAAGGGCC-GACTTATGCCGATGGTGC
1 TCGAGGCAACCGCCCGCACCAAGGGCCAG-CTTGTGTCGATGGTGG
* * * * **
14958732 TCGAGGTAACCGCCTGCACCAAGGGCCATCTTTTACCGATGGTGG
1 TCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGTCGATGGTGG
* * ** * *
14958777 TCGAGGCAACCACCCGCACCAAGGCCCAGCACGTGTCGATAGTGT
1 TCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGTCGATGGTGG
* * *
14958822 TCGAGGCAACCGCCCGCACCAGGGGCCATCTTCTGTCGATGGTGG
1 TCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGTCGATGGTGG
*** * * *
14958867 TCGAGGCAAGAACCAGCACCAAGGG-CTGACTTGTGTCGATGGTGT
1 TCGAGGCAACCGCCCGCACCAAGGGCCAG-CTTGTGTCGATGGTGG
* * * * *
14958912 TCGAGGTAACCGCCTGTACCAA-GGCTCAGCATGTGCCGATGGTGG
1 TCGAGGCAACCGCCCGCACCAAGGGC-CAGCTTGTGTCGATGGTGG
* * * ** * *
14958957 TCGAGGTAACCGCCCGTA-CATGACCCAGCATGTGTCGATGGTGT
1 TCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGTCGATGGTGG
** * * * *
14959001 TCGATACAACAGCCCTCACC-AGAGGCCATCTTGTGTCGATGGTGA
1 TCGAGGCAACCGCCCGCACCAAG-GGCCAGCTTGTGTCGATGGTGG
* * * * * *
14959046 TCGAGGCAACTGTCCACACC-AGGGCCCAGCTTGTGCCAATGGTGA
1 TCGAGGCAACCGCCCGCACCAAGGG-CCAGCTTGTGTCGATGGTGG
** ** * * *
14959091 TCGAGGCAAGTGCCCATACCAAAGGG-CAGCCTGTGCCGATGATGG
1 TCGAGGCAACCGCCCGCACC-AAGGGCCAGCTTGTGTCGATGGTGG
14959136 TCGA
1 TCGA
14959140 TGCATGTGCC
Statistics
Matches: 388, Mismatches: 98, Indels: 23
0.76 0.19 0.05
Matches are distributed among these distances:
44 55 0.14
45 327 0.84
46 2 0.01
47 4 0.01
ACGTcount: A:0.21, C:0.29, G:0.31, T:0.19
Consensus pattern (45 bp):
TCGAGGCAACCGCCCGCACCAAGGGCCAGCTTGTGTCGATGGTGG
Found at i:14958751 original size:90 final size:90
Alignment explanation
Indices: 14958598--14959099 Score: 417
Period size: 90 Copynumber: 5.6 Consensus size: 90
14958588 CCATACCAGA
* * * * * *
14958598 TCGAGGCAAGTGCCCACACCAA-GGCCGGCATGTGTCGATGGTGTTCGAAGCAACTGCCCGCACC
1 TCGAGGCAAGAGCCCGCACCAAGGGCCGACTTGTGTCGATGGTGTTCGAGGCAACCGCCCGCACC
14958662 AGGGGCCATCTTCTGTCGATGGTGG
66 AGGGGCCATCTTCTGTCGATGGTGG
* * * * * *
14958687 TCGAGGCAAGAGCCTGCACCAAGGGCCGACTTATGCCGATGGTGCTCGAGGTAACCGCCTGCACC
1 TCGAGGCAAGAGCCCGCACCAAGGGCCGACTTGTGTCGATGGTGTTCGAGGCAACCGCCCGCACC
* * **
14958752 AAGGGCCATCTTTTACCGATGGTGG
66 AGGGGCCATCTTCTGTCGATGGTGG
* * *
14958777 TCGAGGCAACCA-CCCGCACCAAGGCCCAGCAC--GTGTCGATAGTGTTCGAGGCAACCGCCCGC
1 TCGAGGCAA-GAGCCCGCACCAAGGGCC-G-ACTTGTGTCGATGGTGTTCGAGGCAACCGCCCGC
14958839 ACCAGGGGCCATCTTCTGTCGATGGTGG
63 ACCAGGGGCCATCTTCTGTCGATGGTGG
* * * * * *
14958867 TCGAGGCAAGAACCAGCACCAAGGGCTGACTTGTGTCGATGGTGTTCGAGGTAACCGCCTGTACC
1 TCGAGGCAAGAGCCCGCACCAAGGGCCGACTTGTGTCGATGGTGTTCGAGGCAACCGCCCGCACC
* * * * *
14958932 A-AGGCTCAGCATGTGCCGATGGTGG
66 AGGGGC-CATCTTCTGTCGATGGTGG
* ** * * * * * ** * *
14958957 TCGAGGTAACCGCCCGTA-C-ATGACCCAGCATGTGTCGATGGTGTTCGATACAACAGCCCTCAC
1 TCGAGGCAAGAGCCCGCACCAAGGGCCGA-CTTGTGTCGATGGTGTTCGAGGCAACCGCCCGCAC
* * *
14959020 CAGAGGCCATCTTGTGTCGATGGTGA
65 CAGGGGCCATCTTCTGTCGATGGTGG
** * * * * * *
14959046 TCGAGGCAACTGTCCACACC-AGGGCCCAGCTTGTGCCAATGGTGATCGAGGCAA
1 TCGAGGCAAGAGCCCGCACCAAGGGCCGA-CTTGTGTCGATGGTGTTCGAGGCAA
14959100 GTGCCCATAC
Statistics
Matches: 325, Mismatches: 77, Indels: 21
0.77 0.18 0.05
Matches are distributed among these distances:
88 6 0.02
89 82 0.25
90 233 0.72
91 2 0.01
92 2 0.01
ACGTcount: A:0.21, C:0.29, G:0.31, T:0.19
Consensus pattern (90 bp):
TCGAGGCAAGAGCCCGCACCAAGGGCCGACTTGTGTCGATGGTGTTCGAGGCAACCGCCCGCACC
AGGGGCCATCTTCTGTCGATGGTGG
Found at i:14958909 original size:180 final size:180
Alignment explanation
Indices: 14958614--14959054 Score: 602
Period size: 180 Copynumber: 2.5 Consensus size: 180
14958604 CAAGTGCCCA
* *
14958614 CACCAAGG-CCGGCATGTGTCGATGGTGTTCGAAGCAACTGCCCGCACCAGGGGCCATCTTCTGT
1 CACCAAGGCCCAGCATGTGTCGATGGTGTTCGAAGCAACAGCCCGCACCAGGGGCCATCTTCTGT
* *
14958678 CGATGGTGGTCGAGGCAAGAGCCTGCACCAAGGGCCGACTTATGCCGATGGTGCTCGAGGTAACC
66 CGATGGTGGTCGAGGCAAGAACCAGCACCAAGGGCCGACTTATGCCGATGGTGCTCGAGGTAACC
* * *
14958743 GCCTGCACCAAGGGC-CATCTTTTACCGATGGTGGTCGAGGCAACCACCCG
131 GCCTGCACCAA-GGCTCAGCATGTACCGATGGTGGTCGAGGCAACCACCCG
* * * *
14958793 CACCAAGGCCCAGCACGTGTCGATAGTGTTCGAGGCAACCGCCCGCACCAGGGGCCATCTTCTGT
1 CACCAAGGCCCAGCATGTGTCGATGGTGTTCGAAGCAACAGCCCGCACCAGGGGCCATCTTCTGT
* * * *
14958858 CGATGGTGGTCGAGGCAAGAACCAGCACCAAGGGCTGACTTGTGTCGATGGTGTTCGAGGTAACC
66 CGATGGTGGTCGAGGCAAGAACCAGCACCAAGGGCCGACTTATGCCGATGGTGCTCGAGGTAACC
* * * *
14958923 GCCTGTACCAAGGCTCAGCATGTGCCGATGGTGGTCGAGGTAACCGCCCG
131 GCCTGCACCAAGGCTCAGCATGTACCGATGGTGGTCGAGGCAACCACCCG
* * * * * *
14958973 TA-CATGACCCAGCATGTGTCGATGGTGTTCGATA-CAACAGCCCTCACCAGAGGCCATCTTGTG
1 CACCAAGGCCCAGCATGTGTCGATGGTGTTCGA-AGCAACAGCCCGCACCAGGGGCCATCTTCTG
*
14959036 TCGATGGTGATCGAGGCAA
65 TCGATGGTGGTCGAGGCAA
14959055 CTGTCCACAC
Statistics
Matches: 230, Mismatches: 29, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
179 80 0.35
180 150 0.65
ACGTcount: A:0.21, C:0.29, G:0.31, T:0.19
Consensus pattern (180 bp):
CACCAAGGCCCAGCATGTGTCGATGGTGTTCGAAGCAACAGCCCGCACCAGGGGCCATCTTCTGT
CGATGGTGGTCGAGGCAAGAACCAGCACCAAGGGCCGACTTATGCCGATGGTGCTCGAGGTAACC
GCCTGCACCAAGGCTCAGCATGTACCGATGGTGGTCGAGGCAACCACCCG
Found at i:14959160 original size:13 final size:13
Alignment explanation
Indices: 14959142--14959166 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14959132 ATGGTCGATG
14959142 CATGTGCCATCAC
1 CATGTGCCATCAC
14959155 CATGTGCCATCA
1 CATGTGCCATCA
14959167 AGTGCCATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.36, G:0.16, T:0.24
Consensus pattern (13 bp):
CATGTGCCATCAC
Found at i:14960280 original size:45 final size:45
Alignment explanation
Indices: 14960221--14960544 Score: 184
Period size: 45 Copynumber: 7.0 Consensus size: 45
14960211 TCGTACCAGA
* * *
14960221 GGCCATCTTCTGTCGATGGTGGTCGAGGCAAGAGCCCACACCAAG
1 GGCCAGCTTGTGTCGATGGTGGTCGAGGCAACAGCCCACACCAAG
* * * *
14960266 GGCCGGCTTGTGTCGATGGTGGTCAAGGCAACTGCCCGCACCAAG
1 GGCCAGCTTGTGTCGATGGTGGTCGAGGCAACAGCCCACACCAAG
* * * * * *
14960311 TGCCATCTTCTATCGATGGTGGTCGAGGCAACCGTCCGCACCAAGACCCAGCACA
1 GGCCAGCTTGTGTCGATGGTGGTCGAGGCAACAG-CC-CA-C---A-CCA--A-G
* * * * * * * * *
14960366 TGCCGAGCATGTGCCAATGGTGTTTGAGGCAACTGCCCGCACCAGG
1 GGCC-AGCTTGTGTCGATGGTGGTCGAGGCAACAGCCCACACCAAG
* * *
14960412 GGCCATCTTCTGTCGATGGTGGTCGAGGCAAGAGCCCACACCAAG
1 GGCCAGCTTGTGTCGATGGTGGTCGAGGCAACAGCCCACACCAAG
* * ** * **
14960457 GGCTAGCTTGTGCCGATGGTATTCGAGGCAACCGCCCGTACCAA-
1 GGCCAGCTTGTGTCGATGGTGGTCGAGGCAACAGCCCACACCAAG
* * * * *
14960501 GGCTC-GACATGTGTCGATGATGGTCGAGGTAACCGCCCGCACCA
1 GGC-CAG-CTTGTGTCGATGGTGGTCGAGGCAACAGCCCACACCA
14960545 CGACCCAGTA
Statistics
Matches: 208, Mismatches: 58, Indels: 26
0.71 0.20 0.09
Matches are distributed among these distances:
44 4 0.02
45 159 0.76
46 5 0.02
47 1 0.00
48 1 0.00
49 3 0.01
50 1 0.00
51 1 0.00
52 3 0.01
53 1 0.00
54 2 0.01
55 6 0.03
56 21 0.10
ACGTcount: A:0.21, C:0.30, G:0.31, T:0.19
Consensus pattern (45 bp):
GGCCAGCTTGTGTCGATGGTGGTCGAGGCAACAGCCCACACCAAG
Found at i:14962000 original size:26 final size:26
Alignment explanation
Indices: 14961971--14962023 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14961961 GTTGACTTAG
14961971 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14961997 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14962023 G
1 G
14962024 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14963418 original size:26 final size:26
Alignment explanation
Indices: 14963382--14963460 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
14963372 GTTGACTTAG
14963382 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
14963408 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
14963434 GCATACGGAGTTCATTTCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14963460 G
1 G
14963461 ATCGGATCGA
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14964862 original size:26 final size:26
Alignment explanation
Indices: 14964832--14964884 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14964822 GTTGACTTAG
14964832 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14964858 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14964884 G
1 G
14964885 ATCGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14967360 original size:197 final size:197
Alignment explanation
Indices: 14967012--14967371 Score: 429
Period size: 197 Copynumber: 1.8 Consensus size: 197
14967002 GGCATACGGA
* * * *
14967012 GTTCATTCCCAATCTAAGATCGGATTGGATCGAGGGTTACGGTAGCAGGACCCGTAGCGAGATCA
1 GTTCATTCCCAATCTAAGATCGGACTGAATCGAGGGTTACGATAGCAGGACCAGTAGCGAGATCA
* * * *
14967077 ACAGCACGCAGAGGGGGATCGGGCCGATCCCCAGCTTGCACATTCTGCCTCTCTGGCCAGCTAAG
66 ACAGCACACAGAGGGGGATCGGGCCGATCCCCAACTTGCACATTCTGCCTCTCCGACCAGCTAAG
* **** *
14967142 CGCCTGTGTGCTCGTTTCGTGGGTTGACTTAGGCATATAGAGTTCATCCCCAGTATAAGCAAGTC
131 CGCCCGCACACTAGTTTCGTGGGTTGACTTAGGCATATAGAGTTCATCCCCAGTATAAGCAAGTC
14967207 TC
196 TC
* * * * *
14967209 GTTCATTCCCAGTCTAAGTTTGGACTGAATCGAGGGTTGCGATAGCAGTACCAGTAGC-AGGATC
1 GTTCATTCCCAATCTAAGATCGGACTGAATCGAGGGTTACGATAGCAGGACCAGTAGCGA-GATC
* * * * *
14967273 GACAGCACACA-AGGGGGGA-CTGGGTCGATCCTCAACTTGCACATTCTGCCTCTCCGACCGGTT
65 AACAGCACACAGA-GGGGGATC-GGGCCGATCCCCAACTTGCACATTCTGCCTCTCCGACCAGCT
* * *
14967336 GAGTGCCCGCACACTAGTTTCGTGGGTTGGCTTAGG
128 AAGCGCCCGCACACTAGTTTCGTGGGTTGACTTAGG
14967372 GATACGATGT
Statistics
Matches: 133, Mismatches: 27, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
196 3 0.02
197 130 0.98
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (197 bp):
GTTCATTCCCAATCTAAGATCGGACTGAATCGAGGGTTACGATAGCAGGACCAGTAGCGAGATCA
ACAGCACACAGAGGGGGATCGGGCCGATCCCCAACTTGCACATTCTGCCTCTCCGACCAGCTAAG
CGCCCGCACACTAGTTTCGTGGGTTGACTTAGGCATATAGAGTTCATCCCCAGTATAAGCAAGTC
TC
Found at i:14971216 original size:26 final size:26
Alignment explanation
Indices: 14971186--14971238 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14971176 GTTGACTTAG
14971186 GCATACGGAGTTCATTC-CAAGTCTAA
1 GCATACGGAGTTCATTCTC-AGTCTAA
14971212 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
14971238 G
1 G
14971239 ATCAAACCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAA
Found at i:14972634 original size:26 final size:26
Alignment explanation
Indices: 14972605--14972657 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14972595 GTTGACTTAG
*
14972605 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
14972631 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
14972657 G
1 G
14972658 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:14979804 original size:45 final size:46
Alignment explanation
Indices: 14979672--14979804 Score: 153
Period size: 45 Copynumber: 2.9 Consensus size: 46
14979662 ACAGGCATAT
* ** * *
14979672 CCCGCACCGAGGGTGAGCAGGTGCCGATGGTGGTTGGGGC-ATGTG
1 CCCGCACCAAGGGCCAGCACGTGCCGATGGTGGTTGAGGCAATGTG
* * * *
14979717 CCTGCACCAAGGGCTAGCACGTGCCGATGGTGGTCGATGCAAT-TG
1 CCCGCACCAAGGGCCAGCACGTGCCGATGGTGGTTGAGGCAATGTG
* *
14979762 CCCGTACCAAGGGCCAGCATGTGCCGATGGTGGTTGAGGCAAT
1 CCCGCACCAAGGGCCAGCACGTGCCGATGGTGGTTGAGGCAAT
14979805 CGCTTTGTAC
Statistics
Matches: 73, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
45 71 0.97
46 2 0.03
ACGTcount: A:0.18, C:0.25, G:0.38, T:0.19
Consensus pattern (46 bp):
CCCGCACCAAGGGCCAGCACGTGCCGATGGTGGTTGAGGCAATGTG
Found at i:14979885 original size:45 final size:44
Alignment explanation
Indices: 14979835--14980412 Score: 417
Period size: 45 Copynumber: 12.8 Consensus size: 44
14979825 CATGTGCCTA
* ** *
14979835 CACCAAGGCTC-GACATGTGTCGATGGTGTTTAAGGCAACCGTCCG
1 CACCAAGGC-CAG-CATGTGCCGATGGTGTTCGAGGCAACCGCCCG
* *** *
14979880 CACCAAGGCCCGGCATGTGCCGATGGTGTTCGCCACAACCGCTCG
1 CACCAAGG-CCAGCATGTGCCGATGGTGTTCGAGGCAACCGCCCG
* * * * * * **
14979925 CACCAGGGGCCATCTTTTGTCGATGGTGGTCGAGGCAAGAGCCCG
1 CACCA-AGGCCAGCATGTGCCGATGGTGTTCGAGGCAACCGCCCG
* * * * *
14979970 CACCAAGGGCCAGCTTGTGCCGATGGTGCTCAAGGTAACCGCCCA
1 CACCAA-GGCCAGCATGTGCCGATGGTGTTCGAGGCAACCGCCCG
* * * * * *
14980015 TACCAAGGGCCATCTTCTACCGATGGTGGTCGAGGCAACCGCCCG
1 CACCAA-GGCCAGCATGTGCCGATGGTGTTCGAGGCAACCGCCCG
* * *
14980060 CACTAAGGCCCAGCACGTGCCGATGGTGTTCGAGGCAACCACCCG
1 CACCAAGG-CCAGCATGTGCCGATGGTGTTCGAGGCAACCGCCCG
* * * * *
14980105 CACCAGGGGCCAACATGTGCCGATGGTGTTCAAGGTAACCGTCCG
1 CACCA-AGGCCAGCATGTGCCGATGGTGTTCGAGGCAACCGCCCG
* * * * * **
14980150 CACCAAGGGCCATCTTTTACCGATGATGGTT-GAGGCAAGAGCCCG
1 CACCAA-GGCCAGCATGTGCCGATGGT-GTTCGAGGCAACCGCCCG
* * * *
14980195 CACCAAGGGCC-GACTTGTGCCGATGGTGTTTGAGGCAACCACCCA
1 CACCAA-GGCCAG-CATGTGCCGATGGTGTTCGAGGCAACCGCCCG
* *
14980240 CACCAAGGCTCAGCATGTGCCGATGGTGGTT-GAGGTAACCGCTCG
1 CACCAAGGC-CAGCATGTGCCGATGGT-GTTCGAGGCAACCGCCCG
* * *
14980285 CACCAAGGCTCAACATGTGTCGATGGTGGTCGAGGCAACCGCCCG
1 CACCAAGGC-CAGCATGTGCCGATGGTGTTCGAGGCAACCGCCCG
* * * * *
14980330 CACCACGGCCTAGCATGTGCCGATGGTGTTCGATGCAACTGTCCT
1 CACCAAGGCC-AGCATGTGCCGATGGTGTTCGAGGCAACCGCCCG
* * * * *
14980375 CACTAGGGGCCATCTTGTGCCGATGGTGATCGAGGCAA
1 CACCA-AGGCCAGCATGTGCCGATGGTGTTCGAGGCAA
14980413 TCGTTCGTAC
Statistics
Matches: 418, Mismatches: 99, Indels: 32
0.76 0.18 0.06
Matches are distributed among these distances:
44 11 0.03
45 390 0.93
46 17 0.04
ACGTcount: A:0.21, C:0.30, G:0.30, T:0.19
Consensus pattern (44 bp):
CACCAAGGCCAGCATGTGCCGATGGTGTTCGAGGCAACCGCCCG
Found at i:14979989 original size:90 final size:90
Alignment explanation
Indices: 14979867--14980412 Score: 501
Period size: 90 Copynumber: 6.1 Consensus size: 90
14979857 ATGGTGTTTA
* * * *** *
14979867 AGGCAACCGTCCGCACCAAGGCCCGGCATGTGCCGATGGTGTTCGCCACAACCGCTCGCACCAGG
1 AGGCAACCGCCCGCACCAAGGGCCAGCATGTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAGG
* *
14979932 GGCCATCTTTTGTCGATGGTGGTCG
66 GGCCATCTTGTGCCGATGGTGGTCG
** * * * * ** *
14979957 AGGCAAGAGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGCTCAAGGTAACCGCCCATACCAAG
1 AGGCAACCGCCCGCACCAAGGGCCAGCATGTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAGG
* *
14980022 GGCCATCTTCTACCGATGGTGGTCG
66 GGCCATCTTGTGCCGATGGTGGTCG
* * * *
14980047 AGGCAACCGCCCGCACTAAGGCCCAGCACGTGCCGATGGTGTTCGAGGCAACCACCCGCACCAGG
1 AGGCAACCGCCCGCACCAAGGGCCAGCATGTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAGG
* * * *
14980112 GGCCAACATGTGCCGATGGTGTTCA
66 GGCCATCTTGTGCCGATGGTGGTCG
* * * * * * * ** *
14980137 AGGTAACCGTCCGCACCAAGGGCCATCTTTTACCGATGATGGTT-GAGGCAAGAGCCCGCACCAA
1 AGGCAACCGCCCGCACCAAGGGCCAGCATGTGCCGATGGT-GTTCGAGGCAACCGCCCGCACCAG
* *
14980201 GGGCCGA-CTTGTGCCGATGGTGTTTG
65 GGGCC-ATCTTGTGCCGATGGTGGTCG
* * * *
14980227 AGGCAACCACCCACACCAA-GGCTCAGCATGTGCCGATGGTGGTT-GAGGTAACCGCTCGCACCA
1 AGGCAACCGCCCGCACCAAGGGC-CAGCATGTGCCGATGGT-GTTCGAGGCAACCGCCCGCACCA
* * * *
14980290 -AGGCTCAACATGTGTCGATGGTGGTCG
64 GGGGC-CATCTTGTGCCGATGGTGGTCG
* * * * * *
14980317 AGGCAACCGCCCGCACC-ACGGCCTAGCATGTGCCGATGGTGTTCGATGCAACTGTCCTCACTAG
1 AGGCAACCGCCCGCACCAAGGGCC-AGCATGTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAG
*
14980381 GGGCCATCTTGTGCCGATGGTGATCG
65 GGGCCATCTTGTGCCGATGGTGGTCG
14980407 AGGCAA
1 AGGCAA
14980413 TCGTTCGTAC
Statistics
Matches: 360, Mismatches: 87, Indels: 18
0.77 0.19 0.04
Matches are distributed among these distances:
89 12 0.03
90 341 0.95
91 7 0.02
ACGTcount: A:0.21, C:0.31, G:0.30, T:0.18
Consensus pattern (90 bp):
AGGCAACCGCCCGCACCAAGGGCCAGCATGTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAGG
GGCCATCTTGTGCCGATGGTGGTCG
Found at i:14980084 original size:135 final size:135
Alignment explanation
Indices: 14979945--14980368 Score: 489
Period size: 135 Copynumber: 3.1 Consensus size: 135
14979935 CATCTTTTGT
* * *
14979945 CGATGGTGGTCGAGGCAA-GAGCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGCTCAAGGTAAC
1 CGATGGTGTTCGAGGCAACCA-CCCGCACCAAGGGCCAGCATGTGCCGATGGTGCTCAAGGTAAC
** *
14980009 CGCCCATACCAAGGGCCATCTTCTACCGATGGTGGTCGAGGCAACCGCCCGCACTAAGGCCCAGC
65 CGCCCGCACCAAGGGCCATCTTCTACCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAGC
14980074 ACGTGC
130 ACGTGC
* * *
14980080 CGATGGTGTTCGAGGCAACCACCCGCACCAGGGGCCAACATGTGCCGATGGTGTTCAAGGTAACC
1 CGATGGTGTTCGAGGCAACCACCCGCACCAAGGGCCAGCATGTGCCGATGGTGCTCAAGGTAACC
* * * * ** *
14980145 GTCCGCACCAAGGGCCATCTTTTACCGATGATGGTTGAGGCAAGAGCCCGCACCAAGGGCC-G-A
66 GCCCGCACCAAGGGCCATCTTCTACCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAGCA
14980208 CTTGTGC
131 C--GTGC
* * * **
14980215 CGATGGTGTTTGAGGCAACCACCCACACCAA-GGCTCAGCATGTGCCGATGGTGGTTGAGGTAAC
1 CGATGGTGTTCGAGGCAACCACCCGCACCAAGGGC-CAGCATGTGCCGATGGTGCTCAAGGTAAC
* * * * ** * *
14980279 CGCTCGCACCAA-GGCTCAACATGTGTCGATGGTGGTCGAGGCAACCGCCCGCACCACGGCCTAG
65 CGCCCGCACCAAGGGC-CATCTTCTACCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAG
*
14980343 CATGTGC
129 CACGTGC
*
14980350 CGATGGTGTTCGATGCAAC
1 CGATGGTGTTCGAGGCAAC
14980369 TGTCCTCACT
Statistics
Matches: 242, Mismatches: 40, Indels: 14
0.82 0.14 0.05
Matches are distributed among these distances:
133 2 0.01
134 7 0.03
135 230 0.95
136 2 0.01
137 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.31, T:0.17
Consensus pattern (135 bp):
CGATGGTGTTCGAGGCAACCACCCGCACCAAGGGCCAGCATGTGCCGATGGTGCTCAAGGTAACC
GCCCGCACCAAGGGCCATCTTCTACCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAGCA
CGTGC
Found at i:14986124 original size:26 final size:26
Alignment explanation
Indices: 14986076--14986125 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
14986066 GTTGACTTAG
*
14986076 GCATACGGAGTTCATTCATAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
*
14986102 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATTCACAGTCT
14986126 GAGATCGAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:14990428 original size:26 final size:26
Alignment explanation
Indices: 14990390--14990442 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14990380 GTTGACTTAG
14990390 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
14990416 GCATACGGCGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14990442 G
1 G
14990443 ATCAGACTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14995517 original size:26 final size:26
Alignment explanation
Indices: 14995487--14995539 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14995477 GTTGACTTAG
14995487 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
* *
14995513 GCATACGAAGTTCATTGCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
14995539 G
1 G
14995540 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:14995812 original size:91 final size:91
Alignment explanation
Indices: 14995638--14995820 Score: 296
Period size: 91 Copynumber: 2.0 Consensus size: 91
14995628 GCGCCCGCAT
14995638 GCTCGTTTCATGGGTTGACTTAGGCATGCGAAGTTCATTCTCGATCTAAGCCCCAACCAGACCGA
1 GCTCGTTTCATGGGTTGACTTAGGCATGCGAAGTTCATTCTCGATCTAAGCCCCAACCAGACCGA
* *
14995703 GGGACCTGTAACGGGATCGGTAGCAC
66 GGGACCTGCAACAGGATCGGTAGCAC
* *
14995729 GCTCGTTTCGTGGGTTGACTTAGGCATGCGAAGTTCATTCTCGGTCTAAGCCCCAACCAGACCGA
1 GCTCGTTTCATGGGTTGACTTAGGCATGCGAAGTTCATTCTCGATCTAAGCCCCAACCAGACCGA
* *
14995794 GGGA-CTAGCAGCATGATCGGTAGCAC
66 GGGACCT-GCAACAGGATCGGTAGCAC
14995820 G
1 G
14995821 TAAGGGGATA
Statistics
Matches: 85, Mismatches: 6, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
90 2 0.02
91 83 0.98
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.23
Consensus pattern (91 bp):
GCTCGTTTCATGGGTTGACTTAGGCATGCGAAGTTCATTCTCGATCTAAGCCCCAACCAGACCGA
GGGACCTGCAACAGGATCGGTAGCAC
Found at i:15002197 original size:45 final size:45
Alignment explanation
Indices: 15002099--15002445 Score: 178
Period size: 45 Copynumber: 7.7 Consensus size: 45
15002089 GCCCGGCATG
* ** * * * * *
15002099 TGCCGATGGTGTTCGATACAACCGCCCGCACTAGGGGCCATCTTC
1 TGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCTAGCTTA
* * ** *
15002144 TGCTGATGGTGGTCGAGACAAGAGCCCGCACCAAGGG-TCGGCTTA
1 TGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCT-AGCTTA
* * * *
15002189 TGCCGATGGTGCTCGAGGCAACCGCCTGCACCAAGGGCTATCTTT
1 TGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCTAGCTTA
* * * * * ***
15002234 TGTCGATGGTGGTCGAGGTAACCGCCCGCACCAAGGCCCAACACG
1 TGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCTAGCTTA
* * * * * * * *
15002279 TGTCGATGGTGTTCGAGGCAATCGCCTGCACCAGGGGCCAGCATG
1 TGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCTAGCTTA
* * * * * *
15002324 TGCCGATAGTGTTCGAGGCAACTGCCCGCACC-AGAGGCCATCTTC
1 TGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAG-GGCTAGCTTA
** * * * * * * * *
15002369 TATCGATGGCGTTCGAGGCAATCGCCCACACCAA-AGCTTGACATG
1 TGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCTAG-CTTA
* * *
15002414 TGCCAATAGTGGTTGAGGCAACCGCCCGCACC
1 TGCCGATGGTGGTCGAGGCAACCGCCCGCACC
15002446 CCGACCCAGC
Statistics
Matches: 228, Mismatches: 69, Indels: 10
0.74 0.22 0.03
Matches are distributed among these distances:
44 3 0.01
45 223 0.98
46 2 0.01
ACGTcount: A:0.21, C:0.31, G:0.30, T:0.19
Consensus pattern (45 bp):
TGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCTAGCTTA
Found at i:15002261 original size:90 final size:90
Alignment explanation
Indices: 15002099--15002269 Score: 218
Period size: 90 Copynumber: 1.9 Consensus size: 90
15002089 GCCCGGCATG
* * * *
15002099 TGCCGATGGTGTTCGATACAACCGCCCGCACTAGGGGCCATCTTCTGCTGATGGTGGTCGAGACA
1 TGCCGATGGTGCTCGAGACAACCGCCCGCACCAAGGGCCATCTTCTGCTGATGGTGGTCGAGACA
*
15002164 AGAGCCCGCACCAAGGGTCGGCTTA
66 ACAGCCCGCACCAAGGGTCGGCTTA
* * * * **
15002189 TGCCGATGGTGCTCGAGGCAACCGCCTGCACCAAGGGCTATCTTTTG-TCGATGGTGGTCGAGGT
1 TGCCGATGGTGCTCGAGACAACCGCCCGCACCAAGGGCCATCTTCTGCT-GATGGTGGTCGAGAC
*
15002253 AACCGCCCGCACCAAGG
65 AACAGCCCGCACCAAGG
15002270 CCCAACACGT
Statistics
Matches: 68, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
89 1 0.01
90 67 0.99
ACGTcount: A:0.19, C:0.29, G:0.32, T:0.20
Consensus pattern (90 bp):
TGCCGATGGTGCTCGAGACAACCGCCCGCACCAAGGGCCATCTTCTGCTGATGGTGGTCGAGACA
ACAGCCCGCACCAAGGGTCGGCTTA
Found at i:15002286 original size:90 final size:91
Alignment explanation
Indices: 15002192--15002445 Score: 237
Period size: 90 Copynumber: 2.8 Consensus size: 91
15002182 CGGCTTATGC
* * * * * * *
15002192 CGATGGTGCTCGAGGCAACCGCCTGCACCAAGGGCTATCTTTTGTCGATGGTGGTCGAGGTAACC
1 CGATGGTGCTCGAGGCAACCGCCTGCACCAAGGGCCAGCATGTGCCGATAGTGGTCGAGGCAACC
15002257 GCCCGCACCA-AGGCCCAACACGTGT
66 GCCCGCACCAGAGGCCCAACACGTGT
* * * * *
15002282 CGATGGTGTTCGAGGCAATCGCCTGCACCAGGGGCCAGCATGTGCCGATAGTGTTCGAGGCAACT
1 CGATGGTGCTCGAGGCAACCGCCTGCACCAAGGGCCAGCATGTGCCGATAGTGGTCGAGGCAACC
* * *
15002347 GCCCGCACCAGAGG-CCATCTTC-TAT
66 GCCCGCACCAGAGGCCCAAC-ACGTGT
* * * ** * ** * *
15002372 CGATGGCGTTCGAGGCAATCGCCCACACCAA-AGCTTGACATGTGCCAATAGTGGTTGAGGCAAC
1 CGATGGTGCTCGAGGCAACCGCCTGCACCAAGGGCCAG-CATGTGCCGATAGTGGTCGAGGCAAC
15002436 CGCCCGCACC
65 CGCCCGCACC
15002446 CCGACCCAGC
Statistics
Matches: 135, Mismatches: 26, Indels: 6
0.81 0.16 0.04
Matches are distributed among these distances:
89 3 0.02
90 128 0.95
91 4 0.03
ACGTcount: A:0.21, C:0.31, G:0.29, T:0.19
Consensus pattern (91 bp):
CGATGGTGCTCGAGGCAACCGCCTGCACCAAGGGCCAGCATGTGCCGATAGTGGTCGAGGCAACC
GCCCGCACCAGAGGCCCAACACGTGT
Found at i:15002340 original size:135 final size:135
Alignment explanation
Indices: 15002189--15002526 Score: 331
Period size: 135 Copynumber: 2.5 Consensus size: 135
15002179 GGTCGGCTTA
* * * * *
15002189 TGCCGATGGTGCTCGAGGCAACCGCCTGCACCAAGGGCTATCTTTTGTCGATGGTGGTCGAGGTA
1 TGCCGATAGTGTTCGAGGCAACCGCCTGCACCAAGGGCCATCTTCTGTCGATGGTGATCGAGGTA
* * * * * * * * **
15002254 ACCGCCCGCACCAAGGCCCAACACGTGTCGATGGT-GTTCGAGGCAATCGCCTGCACCAGGGGCC
66 ACCGCCCACACCAAAGCCCAACACGTGCCAATAGTGGTT-GAGGCAACCGCCCGCACCACGACCC
15002318 AGCATG
130 AGCATG
* * * * * *
15002324 TGCCGATAGTGTTCGAGGCAACTGCCCGCACC-AGAGGCCATCTTCTATCGATGGCGTTCGAGGC
1 TGCCGATAGTGTTCGAGGCAACCGCCTGCACCAAG-GGCCATCTTCTGTCGATGGTGATCGAGGT
* *** * *
15002388 AATCGCCCACACCAAAGCTTGACATGTGCCAATAGTGGTTGAGGCAACCGCCCGCACCCCGACCC
65 AACCGCCCACACCAAAGCCCAACACGTGCCAATAGTGGTTGAGGCAACCGCCCGCACCACGACCC
15002453 AGCATG
130 AGCATG
* * * * * *
15002459 TACCGATAGTGTTCGATGCAACCGCCCT-CACTAGGGGCCATCTTGTGTTGATGGTGATCGAGGT
1 TGCCGATAGTGTTCGAGGCAACCG-CCTGCACCAAGGGCCATCTTCTGTCGATGGTGATCGAGGT
15002523 AACC
65 AACC
15002527 ATCTACACCA
Statistics
Matches: 160, Mismatches: 39, Indels: 8
0.77 0.19 0.04
Matches are distributed among these distances:
134 2 0.01
135 152 0.95
136 6 0.04
ACGTcount: A:0.21, C:0.30, G:0.29, T:0.20
Consensus pattern (135 bp):
TGCCGATAGTGTTCGAGGCAACCGCCTGCACCAAGGGCCATCTTCTGTCGATGGTGATCGAGGTA
ACCGCCCACACCAAAGCCCAACACGTGCCAATAGTGGTTGAGGCAACCGCCCGCACCACGACCCA
GCATG
Found at i:15003135 original size:26 final size:26
Alignment explanation
Indices: 15003096--15003152 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
15003086 CTTCTTCTAA
* * * *
15003096 AAAAATTTTAAAAAATCCTGAACAGT
1 AAAAAGTTTAAAAAATCATGAAAAAT
*
15003122 AAAAAGTTTCAAAAATCATGAAAAAT
1 AAAAAGTTTAAAAAATCATGAAAAAT
15003148 AAAAA
1 AAAAA
15003153 ACGGGTCGTC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.61, C:0.09, G:0.07, T:0.23
Consensus pattern (26 bp):
AAAAAGTTTAAAAAATCATGAAAAAT
Found at i:15003916 original size:26 final size:26
Alignment explanation
Indices: 15003880--15003929 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
15003870 GTTGACTTAG
* *
15003880 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCACTCCCAGTCTAA
15003906 GCATACAGAGTTCACTCCCAGTCT
1 GCATACAGAGTTCACTCCCAGTCT
15003930 CAGATCAGGC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCACTCCCAGTCTAA
Found at i:15004457 original size:26 final size:26
Alignment explanation
Indices: 15004420--15004471 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
15004410 GTTGACTTAG
15004420 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
15004446 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15004472 TATCGGACCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15004621 original size:541 final size:528
Alignment explanation
Indices: 15003431--15004607 Score: 1387
Period size: 541 Copynumber: 2.2 Consensus size: 528
15003421 GGATCGACAG
* * * * *
15003431 CACGCAGAGGAGGACCGGGCTGATCCCCAGCTTGCACATTCTACCTCTCTGGTAGGCTGAACGCC
1 CACGCAGAGGGGGACCGGGCTGAT-CCCGGCTTGCACATTCTGCCTCTCTGGT-CGCTGAGCGCC
*
15003496 CGCACGTTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCAAGTCTCGT
64 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCAAGTCTCGT
* * * *
15003561 TCATTCCCAGTCTAAGATCAGATTAGATCGAAGGTTGCGATAGCAGGACCAGTAGTAGGATCGAC
129 TCATTCCCAGTCTAAGATCAGATCAGATCGAAGGTTGCGACAGCAGGACCAGCAGCAGGATCGAC
* ** *
15003626 AGCACGCAAGGGGGGATCGACTAGCGTATTCTGCCTCTCCGGTTGGTTGAGCACCCGTACACTCA
194 AGCACGCAAGGGGGGATCGACTAGCGTATTCTACCTCTCCGGCCGGTTGAGCACCCGCACACTCA
* * *
15003691 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTT
259 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCCGACCGAGGGTT
* ** * * * * * * * *
15003756 GTGGTAGCGGGACCGATAGCGGGATCAGTAGCACGTAGAGGGGGACCGGGTCAATCCCTGGCTTA
324 GTGGCAGCGAAACCGACAACAGGATCAGCAGCACGCAGAGAGGGACCGGGACAATCCCCGGCTTA
* ** *
15003821 CGCATTATGCCTCTCCGACCGGCTCAGCGCCCCCTTGCTCGTTTCGTGGGTTGACTTAGGCATAC
389 CGCATTATGCCTCTCCGACCGGCTCAACGCCCCCACGCTCATTTCGTGGGTTGACTTAGGCATAC
* * *
15003886 GGAGTTCATTCCCAGTCTAAGCATACAGAGTTCACTCCCAGTCTCAGATCAGGCCCGTAGCGGGA
454 GAAGTTCATTCCCAGTCTAAGCATACAGAGTTCACTCCCAGTCTAAGATCAGGCCCGCAGCGGGA
* *
15003951 TCGACAGCAG
519 TCGACAACAA
** * * *
15003961 CACGCAGAGGGGGACCGGGCCAATCCCGACTTGCACATTCTGCCTCTCTAGCCTGCTGAGCGCCC
1 CACGCAGAGGGGGACCGGGCTGATCCCGGCTTGCACATTCTGCCTCTCTGGTC-GCTGAGCGCCC
* *
15004026 GCATGCTCGTTTCATGGGTGGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCAAGTCTCGTT
65 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCAAGTCTCGTT
* * * * * *
15004091 CATTGCTAGTCTAAGAT-GGTATCGGATTG-AGGCTTGTGACAGCAGGACCAGCAGCAGGATCCG
130 CATTCCCAGTCTAAGATCAG-ATCAGATCGAAGG-TTGCGACAGCAGGACCAGCAGCAGGAT-CG
* * * *
15004154 -TAGCACG-TAGGGGGGAATCGGGCCGATCCCTGACTTGCGTGTTTTACCTCTCCGGCCGGTTGA
192 ACAGCACGCAAGGGGGG-AT-----CGA---CT-A---GCGTATTCTACCTCTCCGGCCGGTTGA
* * * *
15004217 GCGCCCGCACGCTCGTTTCATGGGTTGGCTTGGGCATACGGAGTTCATTCCATGTCTAAGCCCCA
244 GCACCCGCACACTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCA
* * *
15004282 GCCCGACCGAGGGTTGTGGCAGCGAAACTGGCAACAGGATC-GACAGCACGCAGAGAGGGA-CTG
309 GCCCGACCGAGGGTTGTGGCAGCGAAACCGACAACAGGATCAG-CAGCACGCAGAGAGGGACCGG
* * * * * *
15004345 GACGATCCCCGGCTTGCGCATTATGCCTCTCCGAGCGTCTCAATGCCCGCACGCTCATTTCGTGG
373 GACAATCCCCGGCTTACGCATTATGCCTCTCCGACCGGCTCAACGCCCCCACGCTCATTTCGTGG
* * *
15004410 GTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAATAT
438 GTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACAGAGTTCACTCCCAGTCTAAGAT
* *
15004475 C-GGACCGGCAGTGGGATCGACAACAA
503 CAGG-CCCGCAGCGGGATCGACAACAA
* * * *
15004501 CACGCAGAGGGGGACCGGGCTGATCCTCGGCTTGCGCATCCTGCCTCTCCGGTCGACTGAGCGCT
1 CACGCAGAGGGGGACCGGGCTGATCC-CGGCTTGCACATTCTGCCTCTCTGGTCG-CTGAGCGCC
* * *
15004566 CGCACGCTCGTTTCGTGTGTTGACTTAGGCATGCGGAGTTCA
64 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
15004608 ATTCCGGTCT
Statistics
Matches: 540, Mismatches: 86, Indels: 31
0.82 0.13 0.05
Matches are distributed among these distances:
528 11 0.02
529 147 0.27
530 23 0.04
534 3 0.01
537 2 0.00
538 1 0.00
539 2 0.00
540 159 0.29
541 192 0.36
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (528 bp):
CACGCAGAGGGGGACCGGGCTGATCCCGGCTTGCACATTCTGCCTCTCTGGTCGCTGAGCGCCCG
CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCAAGTCTCGTTC
ATTCCCAGTCTAAGATCAGATCAGATCGAAGGTTGCGACAGCAGGACCAGCAGCAGGATCGACAG
CACGCAAGGGGGGATCGACTAGCGTATTCTACCTCTCCGGCCGGTTGAGCACCCGCACACTCATT
TCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCCGACCGAGGGTTGT
GGCAGCGAAACCGACAACAGGATCAGCAGCACGCAGAGAGGGACCGGGACAATCCCCGGCTTACG
CATTATGCCTCTCCGACCGGCTCAACGCCCCCACGCTCATTTCGTGGGTTGACTTAGGCATACGA
AGTTCATTCCCAGTCTAAGCATACAGAGTTCACTCCCAGTCTAAGATCAGGCCCGCAGCGGGATC
GACAACAA
Found at i:15009888 original size:550 final size:550
Alignment explanation
Indices: 15008857--15010070 Score: 1405
Period size: 550 Copynumber: 2.2 Consensus size: 550
15008847 CAGCACACAG
* * * * * * * *
15008857 AGGGGGATCGAGCCGA-TCCTCGACTTGCACATTCTACCTCTCTGGCCGGTTGAGCACCTGCACG
1 AGGGGGACCGAGCCGATTCCT-GACTTGCACATTCTACCTCTCCGGTCGGCTCAACGCCTGCACA
* * * * **
15008921 CTCGTTTCATGGGTTGACTTACGCATACGGAGTTCATCCCCAGTCTAAGCAAGTCTTGTTCATTC
65 CTCGTTTCATGCGTTAACTTAGGCATACGGAGTTCATCCTCAGTCTAAGCAAGTCTCATTCATTC
** * * *** ** * **
15008986 CCAGGCTAAGATCGGATCGAACCGAGGGTTGCGATAGCACGACCAACAGCAGGATCGGTAGCACG
130 CCAATCTAAAATC--A--G-ACC---GGAT-CGA-AG-GTTA-CGGCAGTAGGATCGACAGCACG
* * * * *
15009051 TAAGAGGGG-TCAGGGTCGATCCCTGACTTGCGCATTCTGCCTCTCTGATCGGTTGAGCACCCGC
183 -CAGGGGGGACCA-GGCCGATCCCTGACTTGCGCATTCTGCCTCTCCGATCGGTTGAGCACCCGC
* * **
15009115 ACGCTCGTTTCGTGGGTTGGCTTAAGCGTACCAAGTTCATTCCATGTCTAATCCCCAGCCGGACC
246 ACGCTCGTTTCGTAGGTTGGCTTAAGCATACCAAGTTCATTCCATGTCTAAGACCCAGCCGGACC
* * ** * * * *
15009180 GAGGGTTGTGGCAACGGGATCGGCAGTGGGATCGACAGCACATAAAAGGGGACTGGGCCGATTCC
311 GAGGGTTGTCGCAACAGGATCCACAGCGAGATCGACAGCACATAAAAGGGGACCGGGCCGATCCC
* * * *
15009245 CGGCTTACGCATTATGCCTCTCTGATCGGCTCAGCGCCCGTATGCTCGTTTCATGGGTTGGCTTA
376 CAGCTTACGCATTATGCCTCTCTGATCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTA
*
15009310 GGCATACGGAGTTCATCCCCAGTCTAAGCAACTCTCGTTCATTCCCAGTCTAAGATCAGACCGGA
441 GGCATACGGAGTTCATCCCCAGTCTAAGCAACTCTCGTTCAATCCCAGTCTAAGATCAGACCGGA
* * * *
15009375 CCGAGGGTTGCGGTAGCAGGACCAGCAACAGGATCGATAGCACGC
506 CCAAGGGTTACGATAGCAGGACCAGCAACAGGATCGACAGCACGC
* * * * *
15009420 AGAGGGGATCGGGCTGA-TCTCTGACTTGCACATTCTACCTCTCCGGTCGGCTCAATGCCTGCAT
1 AG-GGGGACCGAGCCGATTC-CTGACTTGCACATTCTACCTCTCCGGTCGGCTCAACGCCTGCAC
* * *
15009484 GCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATCCTCAGTCTAAGCAAGTCTCATTCATT
64 ACTCGTTTCATGCGTTAACTTAGGCATACGGAGTTCATCCTCAGTCTAAGCAAGTCTCATTCATT
15009549 CCCAATCTAAAATCAGACCGGATCGAAGGTTACGGCAGTAGGATCGACAGCACGCAGGGGGGACC
129 CCCAATCTAAAATCAGACCGGATCGAAGGTTACGGCAGTAGGATCGACAGCACGCAGGGGGGACC
* * ** * *
15009614 AGGCCGATCCCTGACTTGTGCATTCTGCCTCTCCGGTCGGTTGAGCGTCCGCATGCTCGTTTTGT
194 AGGCCGATCCCTGACTTGCGCATTCTGCCTCTCCGATCGGTTGAGCACCCGCACGCTCGTTTCGT
* ** * *
15009679 AGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCCAGTCGGACTGAGGGTTGTCGCA
259 AGGTTGGCTTAAGCATACCAAGTTCATTCCATGTCTAAGACCCAGCCGGACCGAGGGTTGTCGCA
* * * *
15009744 GCAGGA-CCACAAGCGAGATCGACAGTACA-AAGAGGGGACCGGGCCGATCCCCAGCTTGCGCAT
324 ACAGGATCCAC-AGCGAGATCGACAGCACATAAAAGGGGACCGGGCCGATCCCCAGCTTACGCAT
** *
15009807 TATGCCTCT-TCGATCGGCTCAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATATGGAG
388 TATGCCTCTCT-GATCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAG
* * *
15009871 TTCATCCCTAGTCTAAGCAACTCTCTTTCAATCCCAGTCTAAGATCAGACTGGACCAAGGGTTAC
452 TTCATCCCCAGTCTAAGCAACTCTCGTTCAATCCCAGTCTAAGATCAGACCGGACCAAGGGTTAC
* * * *
15009936 GATAGCAGGACCAGTAGCAGGATCGGCAGCATGC
517 GATAGCAGGACCAGCAACAGGATCGACAGCACGC
* * * *
15009970 AGGGGGACCGAGCCGATTCCTGACTTGCGCATTCTGCCTCTCCGGTTGGCTCAGCGCCTGCACAC
1 AGGGGGACCGAGCCGATTCCTGACTTGCACATTCTACCTCTCCGGTCGGCTCAACGCCTGCACAC
*
15010035 TCGTTTCATGCGTTGACTTAGGCATACGGAGTTCAT
66 TCGTTTCATGCGTTAACTTAGGCATACGGAGTTCAT
15010071 TTCCAATCTA
Statistics
Matches: 553, Mismatches: 92, Indels: 26
0.82 0.14 0.04
Matches are distributed among these distances:
549 84 0.15
550 178 0.32
551 136 0.25
552 19 0.03
553 1 0.00
554 2 0.00
555 3 0.01
556 3 0.01
559 3 0.01
560 1 0.00
562 1 0.00
563 2 0.00
564 118 0.21
565 2 0.00
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.24
Consensus pattern (550 bp):
AGGGGGACCGAGCCGATTCCTGACTTGCACATTCTACCTCTCCGGTCGGCTCAACGCCTGCACAC
TCGTTTCATGCGTTAACTTAGGCATACGGAGTTCATCCTCAGTCTAAGCAAGTCTCATTCATTCC
CAATCTAAAATCAGACCGGATCGAAGGTTACGGCAGTAGGATCGACAGCACGCAGGGGGGACCAG
GCCGATCCCTGACTTGCGCATTCTGCCTCTCCGATCGGTTGAGCACCCGCACGCTCGTTTCGTAG
GTTGGCTTAAGCATACCAAGTTCATTCCATGTCTAAGACCCAGCCGGACCGAGGGTTGTCGCAAC
AGGATCCACAGCGAGATCGACAGCACATAAAAGGGGACCGGGCCGATCCCCAGCTTACGCATTAT
GCCTCTCTGATCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
TCCCCAGTCTAAGCAACTCTCGTTCAATCCCAGTCTAAGATCAGACCGGACCAAGGGTTACGATA
GCAGGACCAGCAACAGGATCGACAGCACGC
Found at i:15011486 original size:26 final size:26
Alignment explanation
Indices: 15011450--15011502 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15011440 GTTGACTTAG
*
15011450 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15011476 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15011502 G
1 G
15011503 ATCGTACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15012896 original size:26 final size:26
Alignment explanation
Indices: 15012860--15012912 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15012850 GTTGACTTAG
15012860 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
15012886 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15012912 G
1 G
15012913 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15014102 original size:197 final size:196
Alignment explanation
Indices: 15013743--15014163 Score: 467
Period size: 197 Copynumber: 2.1 Consensus size: 196
15013733 TGACATAGGT
* * * * *
15013743 ATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCAAGGATTGCGGCAGTAGGACCCGTAAC
1 ATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGATTGCGGCAGTAGGACCAGCAAC
* * * * * * *
15013808 GGGATCGGCAGCATGTAGAGGGGGACCAGGCTGATCCCTGGCTTACACATTCTGCCTCTCTGGCT
66 AGGATCGGCAGCACGCAGAGGGGGACCAGGCTAATCCCTGGCTTACACACTATGCCTCTCCGGCT
* ** * * * **
15013873 GGCTGAGGGCCCGTACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCTCAGTCTAA
131 GGCTCAGCACCCGTAAGCTCGTTTCATGGGTTGACTTAGGCATACAAAGTTCAT-CTCAGTCTAA
15013938 GC
195 GC
**
15013940 A-AGTC-TCGTTCATTCCCAGTCTAAGATCAGACCGGACCAACGG-TTGCGGCAGTAGGACCAGC
1 ATA--CAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAA-GGATTGCGGCAGTAGGACCAGC
* * * * *
15014002 AGCAGGATCGGCAGCACGCAGAGGGGGA-TAGGGCTAATACCC-GTCTTGCGCACTATGCCTCTC
63 AACAGGATCGGCAGCACGCAGAGGGGGACCA-GGCTAAT-CCCTGGCTTACACACTATGCCTCTC
* * *
15014065 C-GATCGGCTCAGCACCCGTAAGCTCGTTTCATGGGTTGACTTAGGCATACAAAGTTTATTTCAG
126 CGGCT-GGCTCAGCACCCGTAAGCTCGTTTCATGGGTTGACTTAGGCATACAAAGTTCATCTCAG
15014129 TCTAAGC
190 TCTAAGC
15014136 ATACAGAGTTCATTCCCAGTCTAAGATC
1 ATACAGAGTTCATTCCCAGTCTAAGATC
15014164 GGATCGATAG
Statistics
Matches: 185, Mismatches: 31, Indels: 17
0.79 0.13 0.07
Matches are distributed among these distances:
195 1 0.01
196 37 0.20
197 141 0.76
198 6 0.03
ACGTcount: A:0.23, C:0.26, G:0.27, T:0.24
Consensus pattern (196 bp):
ATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGATTGCGGCAGTAGGACCAGCAAC
AGGATCGGCAGCACGCAGAGGGGGACCAGGCTAATCCCTGGCTTACACACTATGCCTCTCCGGCT
GGCTCAGCACCCGTAAGCTCGTTTCATGGGTTGACTTAGGCATACAAAGTTCATCTCAGTCTAAG
C
Found at i:15014137 original size:25 final size:26
Alignment explanation
Indices: 15014109--15014160 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
15014099 GTTGACTTAG
* *
15014109 GCATACAAAGTTTATT-TCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
*
15014134 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
15014160 G
1 G
15014161 ATCGGATCGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 14 0.61
26 9 0.39
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.31
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:15015559 original size:367 final size:366
Alignment explanation
Indices: 15014821--15015681 Score: 1115
Period size: 367 Copynumber: 2.3 Consensus size: 366
15014811 CCCACAACGA
* * *
15014821 GATCGATAGCACACAG-AGGGAGATCGAGCCAATCC-CTGGCTTGCACATTCTGCCTCTATGGCT
1 GATCGACAGCACACAGAAGGG-GATCGGGCCAATCCTC-GGCTTGCACATTCTGCCTCTCTGGCT
* *
15014884 GGCTGAGTGCCCGCACGTACGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAA
64 GGCTGAGTGCCCGCACGCACGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
* * * * * *
15014949 GCAAGTCTCATTCATTCCCAGTCTAAGATCAGATCAGATCGAGGGTTACGACAGCAGGACCAGCA
129 ACAAGTCTCATTCATTCCCAGTCTAAGACCAGACCAGACCGAAGGTTACGACAGCAGGACCAACA
* * * * *
15015014 GCAGGATCGATAGCACGTATGGGGGATCGAGTCGATCCTCGACTTGCGCATTCTGCCTCTCCGGC
194 GCAGGATCGATA-CACGCAGGGGGGACCGAGTCGATCCCCGACTTGCACATTCTGCCTCTCCGGC
* * * *
15015079 CGGTTGAGCACCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTTATTCCATGTCTA
258 CGGTTGAGCACCTGCACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATATCTA
* * * * *
15015144 AGCCCCAACCGGACTGAGGATTATGGCAATGAGACTAGCAGTGG
323 AGCCCCAACCGGACCGAGGATTACGGCAACGAGACGAGCAGCGG
* * *
15015188 GATCGACAGCACGCGGAAGGGGATCGGGCCAATCCTCGGCTTGCACATTCTGCCTCTCTGGCTAG
1 GATCGACAGCACACAGAAGGGGATCGGGCCAATCCTCGGCTTGCACATTCTGCCTCTCTGGCTGG
* *
15015253 CTGAGTGCCTGCACGCACGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAAC
66 CTGAGTGCCCGCACGCACGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAAC
* *
15015318 AAGTCTCGTTCATTCTCAGTCTAAGACC-GAACCAGACCGAAGGTTACGACAGCAGGACCAACAG
131 AAGTCTCATTCATTCCCAGTCTAAGACCAG-ACCAGACCGAAGGTTACGACAGCAGGACCAACAG
* *
15015382 CAGGATGGTATA-ATGCAGGGGGGACCGAG-CTGATCCCCGACTTGCACATTCTGCCTCTCCGGC
195 CAGGATCG-ATACACGCAGGGGGGACCGAGTC-GATCCCCGACTTGCACATTCTGCCTCTCCGGC
* * * *
15015445 CGGTTGAGCTCTTGTACGCTCATTTCATGGGTTGGACTTAGGCATACGGAGTTCATTCCATATCT
258 CGGTTGAGCACCTGCACGCTCATTTCATGGGTTGG-CTTAGGCATACGAAGTTCATTCCATATCT
* ** *
15015510 AAGCCCTAGTCGGACCGAGGGTTACGGCAACGAGACCGA-CAGCGG
322 AAGCCCCAACCGGACCGAGGATTACGGCAACGAGA-CGAGCAGCGG
* * * * * *
15015555 GATCGACAGCATACAGAGGGGGATCGGGCCAATCCTCGGCTTACGCATTATGCCTCTCTGACTGG
1 GATCGACAGCACACAGAAGGGGATCGGGCCAATCCTCGGCTTGCACATTCTGCCTCTCTGGCTGG
* * * * * *
15015620 CTCAGTGCCCGCAAGCTCATTTCAT-GGCTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
66 CTGAGTGCCCGCACGCACGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
15015682 GCATACGGAG
Statistics
Matches: 428, Mismatches: 59, Indels: 15
0.85 0.12 0.03
Matches are distributed among these distances:
365 1 0.00
366 109 0.25
367 308 0.72
368 10 0.02
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.23
Consensus pattern (366 bp):
GATCGACAGCACACAGAAGGGGATCGGGCCAATCCTCGGCTTGCACATTCTGCCTCTCTGGCTGG
CTGAGTGCCCGCACGCACGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAAC
AAGTCTCATTCATTCCCAGTCTAAGACCAGACCAGACCGAAGGTTACGACAGCAGGACCAACAGC
AGGATCGATACACGCAGGGGGGACCGAGTCGATCCCCGACTTGCACATTCTGCCTCTCCGGCCGG
TTGAGCACCTGCACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATATCTAAGC
CCCAACCGGACCGAGGATTACGGCAACGAGACGAGCAGCGG
Found at i:15015685 original size:26 final size:26
Alignment explanation
Indices: 15015656--15015708 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15015646 GCTGACTTAG
*
15015656 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
15015682 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
15015708 G
1 G
15015709 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:15017349 original size:159 final size:158
Alignment explanation
Indices: 15017073--15017364 Score: 350
Period size: 159 Copynumber: 1.8 Consensus size: 158
15017063 CTAAGATCAG
*
15017073 ACCGAACCAAGGGTTGTAGCAGCGAGATCGATAGCACGCAGGGGGGACCGGGTCGATCCTCAACT
1 ACCGAACCAAGGGTTGTAGCAGCGAGATCGACAGCACGCAGGGGGGACCGGGTCGATCCTCAACT
* * * * * * * * *
15017138 TGCACATTTTGCCTCTTCGACCGATTGAGCACCTACACGCTCGTTACGTGGGTTGGCTTAGGCAT
66 TACACATTATGCCTCTCCGACCGACTCAGCACCCACACACTCGTTACATGGGTTGACTTAGGCAT
15017203 ACGGAGTTTATTCCATGTCTAAGCCCCA
131 ACGGAGTTTATTCCATGTCTAAGCCCCA
* * * * ***
15017231 ACCGGACCGAGGGTTGTGGCAGCGGGATCGACAGCACGCAGAGGGGGACCGGGTCGATCCTTGGC
1 ACCGAACCAAGGGTTGTAGCAGCGAGATCGACAGCACGCAG-GGGGGACCGGGTCGATCCTCAAC
** * * ** * *
15017296 TTACGTATTATGCCTCTCCGACTGGCTCAGTGCCCGCACACTCGTTTCATGGGTTGACTTAGGCA
65 TTACACATTATGCCTCTCCGACCGACTCAGCACCCACACACTCGTTACATGGGTTGACTTAGGCA
15017361 TACG
130 TACG
15017365 AAGTCATTCC
Statistics
Matches: 108, Mismatches: 25, Indels: 1
0.81 0.19 0.01
Matches are distributed among these distances:
158 36 0.33
159 72 0.67
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
ACCGAACCAAGGGTTGTAGCAGCGAGATCGACAGCACGCAGGGGGGACCGGGTCGATCCTCAACT
TACACATTATGCCTCTCCGACCGACTCAGCACCCACACACTCGTTACATGGGTTGACTTAGGCAT
ACGGAGTTTATTCCATGTCTAAGCCCCA
Found at i:15017386 original size:25 final size:26
Alignment explanation
Indices: 15017358--15017409 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15017348 GTTGACTTAG
15017358 GCATACGAAG-TCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15017383 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15017409 G
1 G
15017410 ATTGGATCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 10 0.38
26 16 0.62
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15020923 original size:45 final size:45
Alignment explanation
Indices: 15020829--15020923 Score: 100
Period size: 45 Copynumber: 2.1 Consensus size: 45
15020819 CATGTGCTCG
* * * * * *
15020829 CACCAAGGGCCAACGCGTGCCGATGGTGGTCGATGCGACTGCCCG
1 CACCAAGGGCCAACACGTGCCGATGGCGGTCGAGGCAACCGCCCA
* * * *
15020874 CACCAAGGGCCAGCATGTGCCGATGGCGGTTGAGGCAACCGCCTA
1 CACCAAGGGCCAACACGTGCCGATGGCGGTCGAGGCAACCGCCCA
15020919 CACCA
1 CACCA
15020924 GATCGAGGCA
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.21, C:0.34, G:0.33, T:0.13
Consensus pattern (45 bp):
CACCAAGGGCCAACACGTGCCGATGGCGGTCGAGGCAACCGCCCA
Found at i:15021394 original size:45 final size:45
Alignment explanation
Indices: 15020937--15021386 Score: 420
Period size: 45 Copynumber: 10.0 Consensus size: 45
15020927 CGAGGCATGT
* * * * * * *
15020937 GCCCACACCAAGGCCCGGCATGTGCCGATGGTGTTCGACGTAACA
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGTTCGAGGCAACC
* * * * * * **
15020982 GCTCACACCAGGGGCCATCTTCTGCTGATGGTGGTT-GAGGCAAGA
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGT-GTTCGAGGCAACC
* * *
15021027 GCCCGCACCAAGGGCCAGCTTGTGTCGATGGTGCTCGAGGCAATC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGTTCGAGGCAACC
* * * * *
15021072 GCTCGCACCAAGGGCCATCTTCTGTCGATGGTGGTCGAGGCAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGTTCGAGGCAACC
* * * *
15021117 GCTCGCACCAAGGCCCAGCATGTACCGATGGTGTTCGAGGCAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGTTCGAGGCAACC
* * * **
15021162 GCTCGCACCAGGGGCCAGCATGTGCCGATGGTGTTCGAGGCAAGA
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGTTCGAGGCAACC
* * *
15021207 GCCGGCACCAAGGGCCGGCTTGTGCCGATGGTGTTCGAGGTAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGTTCGAGGCAACC
* * * * *
15021252 GCCCACACCAA-GGCTCGGCATGTGCCAATGGTGGTT-GAGGTAACC
1 GCCCGCACCAAGGGC-CAGCTTGTGCCGATGGT-GTTCGAGGCAACC
* ** * *
15021297 GCCCGCACCACGACCCAGCATGTGCCGATGGTGTTCGATGCAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGTTCGAGGCAACC
* * *
15021342 GCCCGCACCAAGGGCCATCTTGTGCCAATGGTGATCGAGGCAACC
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGTTCGAGGCAACC
15021387 ATTCGCACTA
Statistics
Matches: 333, Mismatches: 66, Indels: 12
0.81 0.16 0.03
Matches are distributed among these distances:
44 8 0.02
45 318 0.95
46 7 0.02
ACGTcount: A:0.20, C:0.31, G:0.32, T:0.17
Consensus pattern (45 bp):
GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGTTCGAGGCAACC
Found at i:15021412 original size:135 final size:135
Alignment explanation
Indices: 15021009--15021416 Score: 469
Period size: 135 Copynumber: 3.0 Consensus size: 135
15020999 TCTTCTGCTG
** * * * *
15021009 ATGGTGGTTGAGGCAAGAGCCCGCACCAAGGGCCAGCTTGTGTCGATGGTGCTCGAGGCAATCGC
1 ATGGTGGTTGAGGCAACCGCCCGCACCAAGGGCCAGCATGTGCCGATGGTGTTCGAGGCAACCGC
* * * *
15021074 TCGCACCAAGGGCCATCTTCTGTCGATGGTGGTCGAGGCAACCGCTCGCACCAAGGCCCAGCATG
66 CCGCACCAAGGGCCATCTTGTGCCGATGGTGATCGAGGCAACCGCTCGCACCAAGGCCCAGCATG
* *
15021139 TACCG
131 TGCCA
* * **
15021144 ATGGT-GTTCGAGGCAACCGCTCGCACCAGGGGCCAGCATGTGCCGATGGTGTTCGAGGCAAGAG
1 ATGGTGGTT-GAGGCAACCGCCCGCACCAAGGGCCAGCATGTGCCGATGGTGTTCGAGGCAACCG
* ** * * * * * *
15021208 CCGGCACCAAGGGCCGGCTTGTGCCGATGGTGTTCGAGGTAACCGCCCACACCAAGGCTCGGCAT
65 CCCGCACCAAGGGCCATCTTGTGCCGATGGTGATCGAGGCAACCGCTCGCACCAAGGCCCAGCAT
15021273 GTGCCA
130 GTGCCA
* * ** *
15021279 ATGGTGGTTGAGGTAACCGCCCGCACCACGACCCAGCATGTGCCGATGGTGTTCGATGCAACCGC
1 ATGGTGGTTGAGGCAACCGCCCGCACCAAGGGCCAGCATGTGCCGATGGTGTTCGAGGCAACCGC
* ** * *
15021344 CCGCACCAAGGGCCATCTTGTGCCAATGGTGATCGAGGCAACCATTCGCACTAGGGCCCAGC-TC
66 CCGCACCAAGGGCCATCTTGTGCCGATGGTGATCGAGGCAACCGCTCGCACCAAGGCCCAGCAT-
15021408 GTGCCA
130 GTGCCA
15021414 ATG
1 ATG
15021417 CCGATCAAGC
Statistics
Matches: 225, Mismatches: 45, Indels: 6
0.82 0.16 0.02
Matches are distributed among these distances:
134 4 0.02
135 218 0.97
136 3 0.01
ACGTcount: A:0.20, C:0.30, G:0.32, T:0.17
Consensus pattern (135 bp):
ATGGTGGTTGAGGCAACCGCCCGCACCAAGGGCCAGCATGTGCCGATGGTGTTCGAGGCAACCGC
CCGCACCAAGGGCCATCTTGTGCCGATGGTGATCGAGGCAACCGCTCGCACCAAGGCCCAGCATG
TGCCA
Found at i:15024131 original size:26 final size:26
Alignment explanation
Indices: 15024102--15024154 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15024092 GTTGACTTAG
15024102 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
15024128 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15024154 G
1 G
15024155 ATCGAACTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15026885 original size:26 final size:26
Alignment explanation
Indices: 15026856--15026908 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15026846 GTTGACTTAG
*
15026856 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15026882 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15026908 G
1 G
15026909 ATCGGATTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15028876 original size:11 final size:10
Alignment explanation
Indices: 15028859--15028887 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
15028849 AAACTCCTTC
15028859 TAAAAAAATT
1 TAAAAAAATT
15028869 TAAAAAAATT
1 TAAAAAAATT
15028879 TAAAAAAAT
1 TAAAAAAAT
15028888 CCTGAACTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (10 bp):
TAAAAAAATT
Found at i:15029733 original size:26 final size:26
Alignment explanation
Indices: 15029703--15029753 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
15029693 TAACTTAGGG
15029703 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
15029729 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
15029754 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:15029829 original size:174 final size:171
Alignment explanation
Indices: 15029586--15030076 Score: 581
Period size: 174 Copynumber: 2.8 Consensus size: 171
15029576 TGTGGCAGCG
* * * * * **
15029586 GGACCGGCAGTGGGATCGA-CAGTAGGTAGAGGGGGACCGGACCGATCCTCGGCTTGCACATTAT
1 GGACCGACAGTGGGATCGAGCAGCACGTAGAGGGGGACCGGATCGATCCTCGGCTTGCATATCCT
* * * * *
15029650 GCCTCTCCGACCTGCTCAGTGCTCGTACGCTCGTTTCATGGGTTAACTTAGGGATACGGAGTTCA
66 GCCTCTCCGA-CTGCTGAGTGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATGCGGAGTTCA
15029715 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
130 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
*
15029757 GGACCGACAGTGGGATCGGCAGCAGCACGTAGAGGGGGACCAGATCGATCCTCGGCTTGCATATC
1 GGACCGACAGTGGGATC-G-AGCAGCACGTAGAGGGGGACCGGATCGATCCTCGGCTTGCATATC
* * * * * *
15029822 CTGCCTCTCCGATTGGTTGAGTGCCCGCACGCTCGTTTCATAGGTTGACTTAGGTATGCGAAGTT
64 CTGCCTCTCCGACT-GCTGAGTGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATGCGGAGTT
*
15029887 CATTCCCAGTCTAAGCATACGGATTTCATTCCCAGTCTAAGATC
128 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * * * * *
15029931 AGACCGTCAGCGGAATCAGTAGTAGCACGCAGAGGGGGACCGGGAT-GATCATCGGCTTACGTAT
1 GGACCGACAGTGGGATC-G-AGCAGCACGTAGAGGGGGACC-GGATCGATCCTCGGCTTGCATAT
* * * *
15029995 CCTGCCTCTCCGACTGACTGAGAGCCCTTACGCTCGTTTCATGGGTTGACTTAGGCATGCAGAAT
63 CCTGCCTCTCCGACTG-CTGAGTGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATGCGGAGT
* *
15030060 TCATTCACGGTCTAAGC
127 TCATTCCCAGTCTAAGC
15030077 CCTAATCGGA
Statistics
Matches: 271, Mismatches: 43, Indels: 9
0.84 0.13 0.03
Matches are distributed among these distances:
171 16 0.06
172 1 0.00
173 3 0.01
174 248 0.92
175 3 0.01
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (171 bp):
GGACCGACAGTGGGATCGAGCAGCACGTAGAGGGGGACCGGATCGATCCTCGGCTTGCATATCCT
GCCTCTCCGACTGCTGAGTGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATGCGGAGTTCAT
TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
Found at i:15039085 original size:171 final size:171
Alignment explanation
Indices: 15038812--15039206 Score: 431
Period size: 171 Copynumber: 2.3 Consensus size: 171
15038802 TCGTTTCGTG
* * * *** *
15038812 GGTTGACTTAGGGATACGTAGTTCATTCCCAGTCTAAGAT-TGGACCTGATCGAGGGTTGTGGTA
1 GGTTGACTTAGGCATACGGAGTTCATTCCAAGTCTAA-ATCCCAACCTGACCGAGGGTTGTGGTA
* * * * *
15038876 GCAGGACTCGTAGCGAGATCGGCAGCACGTAGAGGGGGACCAGGTTGATCCCC-GACTTGCACAT
65 GCAGGACTCGCAGCGAGATCGACAGCACGCAAAGGGGGACCAGGCTGATCCCCAG-CTTGCACAT
* * *
15038940 TCTGCCTCTCTAG-TCGGCTGAGCACCCACACGCTCATTTCATA
129 CCTGCCTCT-TAGATCGACAGAGCACCCACACGCTCATTTCATA
*
15038983 GGTTGACTTAGGCATACGGAGTTTATTCCAAGTCTAAATCCCAACCTGACCGAGGGTTGTGGTAG
1 GGTTGACTTAGGCATACGGAGTTCATTCCAAGTCTAAATCCCAACCTGACCGAGGGTTGTGGTAG
* * * *
15039048 C-GAGACTGGCAGC-AGGATCGACAGCATGCAAAGGGGGACCAGGCTGATCCTCAGCTTGCGCAT
66 CAG-GACTCGCAGCGA-GATCGACAGCACGCAAAGGGGGACCAGGCTGATCCCCAGCTTGCACAT
* * * * * *
15039111 CCTGCCTCTTCGATTGACAGAGCACCCGCACGCTCGTTTCGTG
129 CCTGCCTCTTAGATCGACAGAGCACCCACACGCTCATTTCATA
** ** *
15039154 GGTTGACTTAGGCATACGGAGTTCATTCCTGGTCTAAGCCCCAACCGGACCGA
1 GGTTGACTTAGGCATACGGAGTTCATTCCAAGTCTAAATCCCAACCTGACCGA
15039207 AGGACCCGCA
Statistics
Matches: 187, Mismatches: 32, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
170 6 0.03
171 180 0.96
172 1 0.01
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.23
Consensus pattern (171 bp):
GGTTGACTTAGGCATACGGAGTTCATTCCAAGTCTAAATCCCAACCTGACCGAGGGTTGTGGTAG
CAGGACTCGCAGCGAGATCGACAGCACGCAAAGGGGGACCAGGCTGATCCCCAGCTTGCACATCC
TGCCTCTTAGATCGACAGAGCACCCACACGCTCATTTCATA
Found at i:15040449 original size:26 final size:26
Alignment explanation
Indices: 15040413--15040465 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15040403 GTTGACTTAG
*
15040413 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
15040439 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
15040465 G
1 G
15040466 ATCAAACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:15041635 original size:158 final size:158
Alignment explanation
Indices: 15041341--15041642 Score: 394
Period size: 158 Copynumber: 1.9 Consensus size: 158
15041331 TTACGGTAGC
* * * *
15041341 AGGACCCGTAGCGAGATTGGCAGCACGCAGAAGGGGATTGGGTCGATCTCCGGCTTGCACATTCT
1 AGGACCCGTAGCAAGATTGGCAGCACGCAGAAGGGGACTGGGTCGATCTCCGACTTGCACATTAT
* * ** * * *
15041406 GCCACTCTGGCCGGCTTAGTGCTCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
66 GCCACTCTGACCGGCTCAGCACCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGGTCA
15041471 TCCCCAGTCTAAGCCCCAACCAGACTGA
131 TCCCCAGTCTAAGCCCCAACCAGACTGA
* * * *
15041499 AGGACCCGTAGCAAGATTGGCAGCACGTAGAGGGGGGCTGGG-CTGATC-CTCGACTTGCGCATT
1 AGGACCCGTAGCAAGATTGGCAGCACGCAGAAGGGGACTGGGTC-GATCTC-CGACTTGCACATT
* *
15041562 ATGCCTCTCCT-ACCGGCTCAGCACCCGTACGCTCATTTCGTTGGTTGACTTAGGCATACGGAGG
64 ATGCCACT-CTGACCGGCTCAGCACCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGG
*
15041626 TCATTCCCAGTCTAAGC
128 TCATCCCCAGTCTAAGC
15041643 ATACGGAGTT
Statistics
Matches: 123, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
157 2 0.02
158 119 0.97
159 2 0.02
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
AGGACCCGTAGCAAGATTGGCAGCACGCAGAAGGGGACTGGGTCGATCTCCGACTTGCACATTAT
GCCACTCTGACCGGCTCAGCACCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGGTCA
TCCCCAGTCTAAGCCCCAACCAGACTGA
Found at i:15041644 original size:26 final size:26
Alignment explanation
Indices: 15041615--15041666 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
15041605 GTTGACTTAG
15041615 GCATACGGAGGTCATTCCCAGTCTAA
1 GCATACGGAGGTCATTCCCAGTCTAA
*
15041641 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGGTCATTCCCAGTCTAA
15041667 AATCAGACCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGGTCATTCCCAGTCTAA
Found at i:15043078 original size:26 final size:26
Alignment explanation
Indices: 15043042--15043091 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
15043032 GACTTAGAAG
*
15043042 TACGGAGTTCATT-TCCAGTCTAAGCA
1 TACGAAGTTCATTCT-CAGTCTAAGCA
15043068 TACGAAGTTCATTCTCAGTCTAAG
1 TACGAAGTTCATTCTCAGTCTAAG
15043092 ATCGAACCGG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (26 bp):
TACGAAGTTCATTCTCAGTCTAAGCA
Found at i:15043382 original size:158 final size:158
Alignment explanation
Indices: 15043175--15043556 Score: 453
Period size: 158 Copynumber: 2.4 Consensus size: 158
15043165 TTACTGGTCG
** * * * *
15043175 GCTGAGCGCCCGCATACTCGTTTCGTGGGTTAACTTAGGCATGCTGAGTTCATTCCCGATCTGAG
1 GCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATGCGGAGTTCATTCCCGATCTAAG
* * * * *
15043240 CCCCAACCGGATCGAGGGACCC-TCAGCGGGATTGGCAGCACGCAGAGGGGGGCCAAACCGATCC
66 CCCCAACCGAATCGAGGGACCCAT-AACGGGATCGGCAGCACGCAGAGGAGGACCAAACCGATCC
* * *
15043304 TCGGCTTACGCATTCTGGCTCTCTAGCTA
130 TCAGCTTACACATTCTGCCTCTCTAGCTA
* *
15043333 GTTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATGCGGAGTTCATTCCCTATCTAAG
1 GCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATGCGGAGTTCATTCCCGATCTAAG
* * * * **
15043398 CCCCAACTGAATCGAGGGACCCATAACGGGATCGGTAGCACGCAGAGGAGGATCGAGTCGATCCT
66 CCCCAACCGAATCGAGGGACCCATAACGGGATCGGCAGCACGCAGAGGAGGACCAAACCGATCCT
* * * *
15043463 CAGCTTGCACATTTTGCCTCTCTCGCTG
131 CAGCTTACACATTCTGCCTCTCTAGCTA
* * * * *
15043491 GCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCGTACAGAGTTCA-TCCCCAGTCTAA
1 GCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATGCGGAGTTCATTCCCGA-TCTAA
15043555 GC
65 GC
15043557 AAGTCTCGTT
Statistics
Matches: 190, Mismatches: 32, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
157 5 0.03
158 184 0.97
159 1 0.01
ACGTcount: A:0.20, C:0.30, G:0.28, T:0.23
Consensus pattern (158 bp):
GCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATGCGGAGTTCATTCCCGATCTAAG
CCCCAACCGAATCGAGGGACCCATAACGGGATCGGCAGCACGCAGAGGAGGACCAAACCGATCCT
CAGCTTACACATTCTGCCTCTCTAGCTA
Done.