Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19866354
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 74000 characters in sequence are not A, C, G, or T
File 64 of 100
Found at i:15044209 original size:845 final size:851
Alignment explanation
Indices: 15042564--15044219 Score: 1978
Period size: 845 Copynumber: 1.9 Consensus size: 851
15042554 CAGGACCCGC
* * *
15042564 AACGGGATCGACAGCACGCAGAGGGGGACCGAGCCGATCCTCAGCTTTCACATTCTACCTCTCTG
1 AACGGGATCGACAGCACGCAGAGGAGGACCGAGCCGATCCTCAGCTTGCACATTCTACCTCTCTC
* * * * * *
15042629 GTTGGCTGAGCGCCCGTACGCTCGTTTCGTCGATTGACTTAGGCGTACGGGGTTCATCCCCAGTC
66 GCTGGCTGAGCACCCGCACGCTCATTTCGTCGATTGACTTAGGCGTACAGAGTTCATCCCCAGTC
* * * * *
15042694 TAAGCAAGTCTCATTCATTCCCAATCTAAGATCAGATCGGATCGAGGGTTGCGACAGTAGAACCA
131 TAAGCAAGTCTCATTCATTCCCAATCTAAGATCAGACCAGATCAAAGGTTACGACAGTAG----A
* * * *
15042759 GCAGCAGGATCGCCAGCACGCAGGGGGGGATCAGGCTGATCCCCGACTTGTGCATTCTGCCTCTC
192 GCACCAGGAT---CAGCACACAGGGGGGGATCAGGATGATCCCCGACTTGCGCATTCTGCCTCTC
* * *
15042824 CGATCGGTTGAGCACCCGCACACTCATTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCATG
254 CGACCGGTTGAGCACCCGCACACTCATTTCGTGGGTTGGCTTAGGCACACGGAGTTCATTCCATG
* * * * * ** * *
15042889 TCTAAGCCCCAGTCGGATCGAGGGTTGTGCCAGAGGGACCGAGAGTGGGATCGATAGCACACAGA
319 TCTAAGCCCCAGCCGGACCAAGGGTTATGCCAGAGAGACCGAGAGCAGGATCGACAGCACACAAA
*
15042954 GGGGGACCGAGCGAATCCTCGACTTGCACATTATGCCTCTCCGACCGGCTCAGCACCTGCACGCT
384 GGGGGACCGAGCGAATCCCCGACTTGCACATTATGCCTCTCCGACCGGCTCAGCACCTGCACGCT
* * *
15043019 CATTTCGTGGGTTGACTTAGAAGTACGGAGTTCATTTCCAGTCTAAGCATACGAAGTTCATTCTC
449 CATTTCGTGGGTTGACTTAGAAGTACGGAGTTCATTCCCAGCCTAAGCATACGAACTTCATTCTC
* * * * *
15043084 AGTCTAAGATCGAACCGGCAGCGGGATCGACAGCAGCACGCAGAAGGGGATCGGGCCGGTCCTCG
514 AGTCTAAGATCGAACCGACAGCAGGATCGACAGCAGCACGCAGAAGGGGACCGAGCCGATCCTCG
** * * * * * *
15043149 GCATGGGTATCTTGCCTTACTGGTCGGCTGAGCGCCCGCATACTCGTTTCGTGGGTTAACTTAGG
579 GCATACGCATCTTGCCTTACCGGTCGGCTGAGCACCCGCACACTCGTTCCGTGGGTTAACATAGG
* * ** * * * *
15043214 CATGCTGAGTTCATTCCCGATCTGAGCCCCAACCGGATCGAGGGACCCTCAGCGGGATTGGCAGC
644 CATACTGAGTTCATTCCCGATCTAAGCCCCAACCAAACCGAAGGACCCACAACGGGATTGGCAGC
* * * *
15043279 ACGCAGAGGGGGGCCAAACCGATCCTCGGCTTACGCATTCTGGCTCTCTAGCTAGTTGAGCGCCC
709 ACGCAGAAGGGGGCCAAACCGATCCTCGGCTTACGCATTCTGGCTCTCAAGCGAGCTGAGCGCCC
*
15043344 GCACGCTCATTTCGTGGGTTGACTTAGGCATGCGGAGTTCATTCCCTATCTAAGCCCCAACTGAA
774 GCACGCTCATTTCATGGGTTGACTTAGGCATGCGGAGTTCATTCCCTATCTAAGCCCCAACTGAA
15043409 TCGAGGGACCCAT
839 TCGAGGGACCCAT
** * * * *
15043422 AACGGGATCGGTAGCACGCAGAGGAGGATCGAGTCGATCCTCAGCTTGCACATTTTGCCTCTCTC
1 AACGGGATCGACAGCACGCAGAGGAGGACCGAGCCGATCCTCAGCTTGCACATTCTACCTCTCTC
* *
15043487 GCTGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCGTACAGAGTTCATCCCCAGTC
66 GCTGGCTGAGCACCCGCACGCTCATTTCGTCGATTGACTTAGGCGTACAGAGTTCATCCCCAGTC
* * * *
15043552 TAAGCAAGTCTCGTTCATTCCCAGTGTAAGATCGGACCAGATCAAAGGTTACGACAGTAG-G-AC
131 TAAGCAAGTCTCATTCATTCCCAATCTAAGATCAGACCAGATCAAAGGTTACGACAGTAGAGCAC
*
15043615 CA-G-T-AGCACACA-GGGGGGATC-GGATCGATCCCCGACTTGCGCATTTTGCCTCTCCGACCG
196 CAGGATCAGCACACAGGGGGGGATCAGGAT-GATCCCCGACTTGCGCATTCTGCCTCTCCGACCG
* * * *
15043675 GTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCACACGGAGTTCATTCTATGTCTAAG
260 GTTGAGCACCCGCACACTCATTTCGTGGGTTGGCTTAGGCACACGGAGTTCATTCCATGTCTAAG
* * * *
15043740 CCCTAGCCGGACCAAGGGTTATGGCAGTGAGACC-AGCAGCAGGATCGACAGCACACAAAAGGTG
325 CCCCAGCCGGACCAAGGGTTATGCCAGAGAGACCGAG-AGCAGGATCGACAGCACAC-AAAGGGG
* * * * * * *
15043804 G-CTGGGTCG-ATCCCCGGCTTGCGCATTATGCCTCTCCGACTGGCTCA--ATGCTCGCATGCTC
388 GACCGAG-CGAATCCCCGACTTGCACATTATGCCTCTCCGACCGGCTCAGCA-CCT-GCACGCTC
* * * * *
15043865 ATTTCGTGGGTTGACTTAGGCA-TACGGAGTTCATTCCCAGCCTAAGCATATGGACTTCATTTTT
450 ATTTCGTGGGTTGACTTA-GAAGTACGGAGTTCATTCCCAGCCTAAGCATACGAACTTCATTCTC
* * * * *
15043929 AGTCTAAGATCGGACTGATAGCAGGATCGACAGCAGCACGTA-AAGGGGGCCCGAGCCGATCCTC
514 AGTCTAAGATCGAACCGACAGCAGGATCGACAGCAGCACGCAGAA-GGGGACCGAGCCGATCCTC
* * * * *
15043993 GGCTTACGCATCTTGCCTCT-CCGGTCGGCTGAGCACCTGCACGCTCGTTCCTTGGGTTGACATA
578 GGCATACGCATCTTGCCT-TACCGGTCGGCTGAGCACCCGCACACTCGTTCCGTGGGTTAACATA
** * *
15044057 GGCATAC-GAAGTTCATTCTTGATCTAAGCCCCAATCAAACCGAAGGATCCACAACGGGATTGGC
642 GGCATACTG-AGTTCATTCCCGATCTAAGCCCCAACCAAACCGAAGGACCCACAACGGGATTGGC
**** * * * * *
15044121 AGCACGCAGAAGGGGGCTGGGCTGATCCTTGGCTTGCGCATTCTGGCTCTCCAATCGA-CTGAGT
706 AGCACGCAGAAGGGGGCCAAACCGATCCTCGGCTTACGCATTCTGGCTCT-CAAGCGAGCTGAGC
*
15044185 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCAT
770 GCCCGCACGCTCATTTCATGGGTTGACTTAGGCAT
15044220 ACGTAGTGCA
Statistics
Matches: 670, Mismatches: 117, Indels: 35
0.82 0.14 0.04
Matches are distributed among these distances:
843 1 0.00
844 10 0.01
845 467 0.70
846 22 0.03
850 1 0.00
851 1 0.00
852 3 0.00
853 1 0.00
858 164 0.24
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (851 bp):
AACGGGATCGACAGCACGCAGAGGAGGACCGAGCCGATCCTCAGCTTGCACATTCTACCTCTCTC
GCTGGCTGAGCACCCGCACGCTCATTTCGTCGATTGACTTAGGCGTACAGAGTTCATCCCCAGTC
TAAGCAAGTCTCATTCATTCCCAATCTAAGATCAGACCAGATCAAAGGTTACGACAGTAGAGCAC
CAGGATCAGCACACAGGGGGGGATCAGGATGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGG
TTGAGCACCCGCACACTCATTTCGTGGGTTGGCTTAGGCACACGGAGTTCATTCCATGTCTAAGC
CCCAGCCGGACCAAGGGTTATGCCAGAGAGACCGAGAGCAGGATCGACAGCACACAAAGGGGGAC
CGAGCGAATCCCCGACTTGCACATTATGCCTCTCCGACCGGCTCAGCACCTGCACGCTCATTTCG
TGGGTTGACTTAGAAGTACGGAGTTCATTCCCAGCCTAAGCATACGAACTTCATTCTCAGTCTAA
GATCGAACCGACAGCAGGATCGACAGCAGCACGCAGAAGGGGACCGAGCCGATCCTCGGCATACG
CATCTTGCCTTACCGGTCGGCTGAGCACCCGCACACTCGTTCCGTGGGTTAACATAGGCATACTG
AGTTCATTCCCGATCTAAGCCCCAACCAAACCGAAGGACCCACAACGGGATTGGCAGCACGCAGA
AGGGGGCCAAACCGATCCTCGGCTTACGCATTCTGGCTCTCAAGCGAGCTGAGCGCCCGCACGCT
CATTTCATGGGTTGACTTAGGCATGCGGAGTTCATTCCCTATCTAAGCCCCAACTGAATCGAGGG
ACCCAT
Found at i:15045346 original size:26 final size:26
Alignment explanation
Indices: 15045310--15045385 Score: 134
Period size: 26 Copynumber: 2.9 Consensus size: 26
15045300 GACTTAGACG
*
15045310 TACGAAGTTCATTCCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
*
15045336 TACGGAGTTCATTCCCAGTCTAAACA
1 TACGGAGTTCATTCCCAGTCTAAGCA
15045362 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
15045386 ATCAGACCGA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:15045698 original size:158 final size:158
Alignment explanation
Indices: 15045468--15045845 Score: 485
Period size: 158 Copynumber: 2.4 Consensus size: 158
15045458 CTCATCGGTT
* * * *
15045468 GACTGAGCGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCATGCTGAGTTCATTCCC-GATCTA
1 GACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATGCAGAGTTCATTCCCAG-TCTA
* * * * ** *
15045532 AGCCCCAACTGGATCGAGGGACCC-TCAGTGGGATCGACAGCACGTAGAGAGGGG-TCGGGCCGA
65 ACCCCCAACCGAATCGAGGGACCCGT-AGCGGGATCGACAGCACACAGAG-GGGGACCGGGCCGA
* * *
15045595 TCCTCGGCTTG-AGGATTCTGGCTCTCTGGCC
128 TCCTCGGCTTGCA-CATTCTGCCTCTCTCGCC
* * *
15045626 GACTGAGTGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATGCGGAGTTCATTCCCAGTCTAA
1 GACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATGCAGAGTTCATTCCCAGTCTAA
* *
15045691 CCCCCAACCGAATCGAGGGACCCGTAGCGGGATCGATAGCACACAGAGGGGGACCGGGCTGATCC
66 CCCCCAACCGAATCGAGGGACCCGTAGCGGGATCGACAGCACACAGAGGGGGACCGGGCCGATCC
*
15045756 TCGGCTTGCACATTCTGCCTCTCTCGCT
131 TCGGCTTGCACATTCTGCCTCTCTCGCC
* * *
15045784 GGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTC
1 GACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATGCAGAGTTCATTCCCAGTC
15045846 AAAGCAAGTC
Statistics
Matches: 191, Mismatches: 25, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
157 4 0.02
158 184 0.96
159 3 0.02
ACGTcount: A:0.18, C:0.29, G:0.30, T:0.23
Consensus pattern (158 bp):
GACTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATGCAGAGTTCATTCCCAGTCTAA
CCCCCAACCGAATCGAGGGACCCGTAGCGGGATCGACAGCACACAGAGGGGGACCGGGCCGATCC
TCGGCTTGCACATTCTGCCTCTCTCGCC
Found at i:15048692 original size:26 final size:26
Alignment explanation
Indices: 15048662--15048711 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
15048652 GTTGACTTAG
15048662 GCATACAGACTTCATTCCCAGTCTGA
1 GCATACAGACTTCATTCCCAGTCTGA
* *
15048688 GCATACGGAGTTCATTCCCAGTCT
1 GCATACAGACTTCATTCCCAGTCT
15048712 AAGATCGGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACAGACTTCATTCCCAGTCTGA
Found at i:15050524 original size:196 final size:196
Alignment explanation
Indices: 15050187--15050558 Score: 478
Period size: 196 Copynumber: 1.9 Consensus size: 196
15050177 TAGACATGGA
* * * * * **
15050187 ATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAGTGTGCAGGCACTCAATCGATCGGAGAGG
1 ATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAACCGACCAGAGAAC
* * * ** * *
15050252 TAAAATGTGCAAGTCGAGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCCTGCTGCTGGTCCT
66 CAAAATGTGCAAGTCGAGGATCGGCCCGGTCCCCCCTGCATGCTACCGATCCCACTACGGGTCCT
* * * *
15050317 ACTATTGTAACCCTCGATTTGGTCTGATCTTAGACTGGGAATGAACAACACTTACTTAGACTGGG
131 ACTACTGTAACCCTCGATTCGATCCGATCTTAGACTGGGAATGAACAACACTTACTTAGACTGGG
15050382 G
196 G
* * *
15050383 ATGAACTCTGTATGCCTAAGTCAACCCATG-AACGAGCGTGCAGGCGCTCAACCGACCAGAGAAC
1 ATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAACCGACCAGAGAAC
* *
15050447 CAGAATGTGCAAG-CGGAGGATCGGCCCGGTCCCCCTCTGCATGCTACTGATCCCACTACGGGTC
66 CAAAATGTGCAAGTC-GAGGATCGGCCCGGTCCCCC-CTGCATGCTACCGATCCCACTACGGGTC
* * *
15050511 TTGCTGCTGTAACCCTCGATTCGATCCGATCTTAGACTGGGAATGAAC
129 CTACTACTGTAACCCTCGATTCGATCCGATCTTAGACTGGGAATGAAC
15050559 TTCATATACC
Statistics
Matches: 148, Mismatches: 26, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
194 1 0.01
195 57 0.39
196 90 0.61
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (196 bp):
ATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAACCGACCAGAGAAC
CAAAATGTGCAAGTCGAGGATCGGCCCGGTCCCCCCTGCATGCTACCGATCCCACTACGGGTCCT
ACTACTGTAACCCTCGATTCGATCCGATCTTAGACTGGGAATGAACAACACTTACTTAGACTGGG
G
Found at i:15051388 original size:26 final size:26
Alignment explanation
Indices: 15051359--15051411 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15051349 CCGGTCTGAT
* *
15051359 CTTAGACT-GAGAGTGAACTCTGTATG
1 CTTAGACTAG-GAATGAACTCCGTATG
15051385 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15051411 C
1 C
15051412 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:15052122 original size:197 final size:197
Alignment explanation
Indices: 15051721--15052136 Score: 476
Period size: 197 Copynumber: 2.1 Consensus size: 197
15051711 CGGTTCGGTT
* * *
15051721 CGATCTTAGACCAGGAATGAACGGGACTTGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCA
1 CGATCTTAGACTAGGAATGAACGGGACTTGCTGAGACTGAGGATGAACTTCGTATGCCTAAGTCA
* * * ** * * * * *
15051786 ACCCACAAAATGAGCATGCGGGCATTCAACCGGCCAGAGAGGCAGAATGTGCAAGCCGGGGATCG
66 ACCAACAAAACGAGCATGCGGGCACTCAACCAACCAAAAAGGCAGAATGTGCAAGCCGAGAATAG
* * * * * * *
15051851 ACCTGGTCTCCCTCTGCGTGCTATCGATCCCGCTGCGGGTCATGCTGCTATAACCCTAGATCCGG
131 ACCCGATCACCCTCTACATGCTATCGATCCCGCTGCGGGTCATGCTGCTACAAACCTAGATCCGG
*
15051916 TC
196 AC
* * *
15051918 CGATCTTAGACTGGGACTGAACGGGACTTGCTGAGACTGAGGATGAACTTTGTATGCCTAAGTCA
1 CGATCTTAGACTAGGAATGAACGGGACTTGCTGAGACTGAGGATGAACTTCGTATGCCTAAGTCA
** * * * *
15051983 ACCAATGAAACGAGCGTGCGGTCGCTCAGCCAACCAAAAAGGCAGAATGTGCAAGCCGAGAATTA
66 ACCAACAAAACGAGCATGCGGGCACTCAACCAACCAAAAAGGCAGAATGTGCAAGCCGAGAA-TA
* * * *
15052048 G-CCCGATCACCCTCTACATGCTGTCGATCCCGCTGCGGGTCCTGCTG-TAGCAAACCTCGATCT
130 GACCCGATCACCCTCTACATGCTATCGATCCCGCTGCGGGTCATGCTGCTA-CAAACCTAGATCC
15052111 GGAC
194 GGAC
* *
15052115 TGATCTTAGACTAGAAATGAAC
1 CGATCTTAGACTAGGAATGAAC
15052137 TCCATATGCC
Statistics
Matches: 179, Mismatches: 38, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
196 2 0.01
197 175 0.98
198 2 0.01
ACGTcount: A:0.26, C:0.26, G:0.27, T:0.21
Consensus pattern (197 bp):
CGATCTTAGACTAGGAATGAACGGGACTTGCTGAGACTGAGGATGAACTTCGTATGCCTAAGTCA
ACCAACAAAACGAGCATGCGGGCACTCAACCAACCAAAAAGGCAGAATGTGCAAGCCGAGAATAG
ACCCGATCACCCTCTACATGCTATCGATCCCGCTGCGGGTCATGCTGCTACAAACCTAGATCCGG
AC
Found at i:15053011 original size:26 final size:26
Alignment explanation
Indices: 15052975--15053030 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
15052965 CCAATCCGAT
15052975 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
15053001 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
15053027 CTTA
1 CTTA
15053031 AGTCAGCCCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15054422 original size:26 final size:26
Alignment explanation
Indices: 15054392--15054444 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15054382 TCCGTCTTAT
15054392 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15054418 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15054444 C
1 C
15054445 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15055085 original size:197 final size:197
Alignment explanation
Indices: 15054744--15055116 Score: 487
Period size: 197 Copynumber: 1.9 Consensus size: 197
15054734 GGTTTGGTTC
* * *
15054744 GATCTTAGATCGGGAATGAACGAGACTTGCTTAAACTAGGGATGAACTCTGTATGCCTAAGTCAA
1 GATCTTAGATCGGGAATGAACAAGACTTGCTGAAACTAGGGATGAACTCCGTATGCCTAAGTCAA
* * * *
15054809 CCCACGAAACGAGCATACGGGCACTCAGTCGGCCAGAGAAGTAGAATGTGCAAGTCGAGGATCGA
66 CCCACGAAACAAGCATACGGGCACTCAATCGGCCAGAGAAGCAGAATGTGCAAGTCGAGGATCAA
* * * * *
15054874 CCTGGTCCCCCTCTGCGTGCTGTCAATCCCGCTGTGGGTCCTGCTATCGTAACCCTTGATCCGAT
131 CCCGATCACCCTCTGCGTGCTGCCAATCCCGCTATGGGTCCTGCTATCGTAACCCTTGATCCGAT
15054939 CT
196 CT
** * * *
15054941 GATCTTAGATTTGGAATGAACAAGACTTGCTGAGACTGGGGATGAACTCCGTATGGCTAAGTCAA
1 GATCTTAGATCGGGAATGAACAAGACTTGCTGAAACTAGGGATGAACTCCGTATGCCTAAGTCAA
* * * ** *
15055006 CCTACGAAACAAGCGTGCGGGTGCTCAATCGGCCAGA-AAGGCAGAATGTGCAAGTCGAGGATTA
66 CCCACGAAACAAGCATACGGGCACTCAATCGGCCAGAGAA-GCAGAATGTGCAAGTCGAGGATCA
* * * *
15055070 ACCCGATCACCCTCTGTGTGTTGCCAATCTCGTTATGGGTCCTGCTA
130 ACCCGATCACCCTCTGCGTGCTGCCAATCCCGCTATGGGTCCTGCTA
15055117 CCACAACCCA
Statistics
Matches: 148, Mismatches: 27, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
196 2 0.01
197 146 0.99
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (197 bp):
GATCTTAGATCGGGAATGAACAAGACTTGCTGAAACTAGGGATGAACTCCGTATGCCTAAGTCAA
CCCACGAAACAAGCATACGGGCACTCAATCGGCCAGAGAAGCAGAATGTGCAAGTCGAGGATCAA
CCCGATCACCCTCTGCGTGCTGCCAATCCCGCTATGGGTCCTGCTATCGTAACCCTTGATCCGAT
CT
Found at i:15056045 original size:26 final size:26
Alignment explanation
Indices: 15055995--15056047 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
15055985 CCGGTCTGAT
*
15055995 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAAATTCGTATG
15056021 CTTAGAC-ATGGAATGAAA-TCTGTATG
1 CTTAGACTA-GGAATGAAATTC-GTATG
15056047 C
1 C
15056048 CTAAGCCAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAAATTCGTATG
Found at i:15056564 original size:26 final size:26
Alignment explanation
Indices: 15056535--15056587 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15056525 TCGGTCCGAT
15056535 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15056561 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15056587 C
1 C
15056588 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15058432 original size:197 final size:197
Alignment explanation
Indices: 15058077--15058520 Score: 570
Period size: 197 Copynumber: 2.3 Consensus size: 197
15058067 GTGCTATCGA
* *
15058077 TCCTGCTGTCGCAACCCTCGATCCGGTCTGAACTTAGACTGGGAATGAACGAAACTTGCTTAGAC
1 TCCTGCTGTCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACGAAACTTGCTTAGAC
* *
15058142 TGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCAGGCGCTCAGCATGCCAA
66 TGGGGATGAACTCCGTATGCCTAAGTCAACCCATAAAATAAGCGTGCAGGCGCTCAGCATGCCAA
* ** * * * *
15058207 AGAGGCAAAATGTACAAGCTAGGGATCGGCTTGTTCCCTTTCTGCGTGCTGTCGATCTCACTGCG
131 AGAGGCAAAATGTACAAGCGAGGGATCGGCCCGATCCCCTTCTGCATGCTGTCGATCCCACTGCG
15058272 GG
196 GG
* * * * * *
15058274 TTC-GACTGTCGTAACCCTCGATCCGATCTGTTCTTAGACTGAGAATGAATGAGACTTGCTTAGA
1 TCCTG-CTGTCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACGAAACTTGCTTAGA
* * * * *
15058338 CTGGGGATGAACTTCGTATGCCTAAGTCAACCCATAAAATAAGTGTGCGGGTGCTCAGCCA-GTC
65 CTGGGGATGAACTCCGTATGCCTAAGTCAACCCATAAAATAAGCGTGCAGGCGCTCAG-CATGCC
* * * * * *
15058402 AGAGTGGCAGAATGTGCAAGCCGA-GGATCGGCCCGATCCCCTTCTGTATGCTGTCGATCCCGCT
129 AAAGAGGCAAAATGTACAAG-CGAGGGATCGGCCCGATCCCCTTCTGCATGCTGTCGATCCCACT
15058466 GCGGG
193 GCGGG
* *
15058471 TCCTGCTATCGCAACCCTCGATCTGATCTGATCTTAGACTGGGAATGAAC
1 TCCTGCTGTCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAAC
15058521 TCCGTATGCC
Statistics
Matches: 208, Mismatches: 35, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
196 1 0.00
197 202 0.97
198 5 0.02
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.25
Consensus pattern (197 bp):
TCCTGCTGTCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACGAAACTTGCTTAGAC
TGGGGATGAACTCCGTATGCCTAAGTCAACCCATAAAATAAGCGTGCAGGCGCTCAGCATGCCAA
AGAGGCAAAATGTACAAGCGAGGGATCGGCCCGATCCCCTTCTGCATGCTGTCGATCCCACTGCG
GG
Found at i:15063483 original size:148 final size:148
Alignment explanation
Indices: 15063214--15063483 Score: 333
Period size: 148 Copynumber: 1.8 Consensus size: 148
15063204 CTGGTTGGGG
* * * *
15063214 CTTAGACCGAGAATGAACTCCGCATGCCTAATTCAACCCACGAAACGAGCGTGCGGGTGCTCAGT
1 CTTAGACCGAGAATGAACTCCGCATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCGCTCAGC
* * * *
15063279 CGACCGGAAAGGCAGGATGCGCAAGCCGAGGATCGGCCCGATCCCCCTCTATGTGCTACTGTCGA
66 CGACCAGAAAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCCTCTACGTGCTACTGTCGA
15063344 TCCCGCTACCGGTCTGAT
131 TCCCGCTACCGGTCTGAT
* * * * * *
15063362 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCATCCCAAGTAACGAGCGTGCGGGCGCTGAGC
1 CTTAGACCGAGAATGAACTCCGCATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCGCTCAGC
** * * * ** * *
15063427 CGGTCAGAGAGGCATAATGCGTAAGTTGGGGATCAGCCCGGTCCCCCTCTACGTGCT
66 CGACCAGAAAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCCTCTACGTGCT
15063484 GTCGATCCCA
Statistics
Matches: 99, Mismatches: 23, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
148 99 1.00
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.19
Consensus pattern (148 bp):
CTTAGACCGAGAATGAACTCCGCATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCGCTCAGC
CGACCAGAAAGGCAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCCTCTACGTGCTACTGTCGA
TCCCGCTACCGGTCTGAT
Found at i:15065869 original size:169 final size:170
Alignment explanation
Indices: 15065597--15065918 Score: 387
Period size: 169 Copynumber: 1.9 Consensus size: 170
15065587 GCAGCAGGTC
* * ** *
15065597 CCTCGGTCCGGTTGGGGCTTAGATTAGGAATGAACTCCGCATGCCTAAGTCAACCCATGAAACGA
1 CCTCGATCCGATTGGGGCTTAGACAAGGAATGAACTCCGCATGCCTAAGCCAACCCATGAAACGA
* * * ** * * * *
15065662 ATGTGCGGGCGCTGAGTCGGTCGAAGAGCCATAATGCGCAAGCCAGGGATCAG-CTCGATCCCAC
66 ACGTACGGGCGCTCAACCGGCCGAAGAGACAGAATGCGCAAGCCAGGGATC-GCCCCGATCCCAC
* *
15065726 TCTGCGTGCTGTCGATCCTGCTGCCTATCCCGCTGCCACAA
130 CCTGCGTGCTGTCGATCCTACTGCCTATCCCGCTGCCACAA
*
15065767 CCTCGATCCGATTGGGGCTTAGACAAGG-ATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA
1 CCTCGATCCGATTGGGGCTTAGACAAGGAATGAACTCCGCATGCCTAAGCCAACCCATGAAACGA
* * * * * * *
15065831 GCGTACGGGCGCTCAACCTGCCGGAGAGATAGAATGCGCAAGTCGGGGATCGCCCCGATCCCCCC
66 ACGTACGGGCGCTCAACCGGCCGAAGAGACAGAATGCGCAAGCCAGGGATCGCCCCGATCCCACC
* *
15065896 CTGTGTTCTGTCGATCCTACTGC
131 CTGCGTGCTGTCGATCCTACTGC
15065919 TGGTCCTGCT
Statistics
Matches: 125, Mismatches: 26, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
168 1 0.01
169 100 0.80
170 24 0.19
ACGTcount: A:0.22, C:0.31, G:0.27, T:0.20
Consensus pattern (170 bp):
CCTCGATCCGATTGGGGCTTAGACAAGGAATGAACTCCGCATGCCTAAGCCAACCCATGAAACGA
ACGTACGGGCGCTCAACCGGCCGAAGAGACAGAATGCGCAAGCCAGGGATCGCCCCGATCCCACC
CTGCGTGCTGTCGATCCTACTGCCTATCCCGCTGCCACAA
Found at i:15066136 original size:197 final size:196
Alignment explanation
Indices: 15065793--15066158 Score: 481
Period size: 197 Copynumber: 1.9 Consensus size: 196
15065783 GCTTAGACAA
* * *
15065793 GGATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAACCTGCCGGAGA
1 GGATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTACGGGCGCTCAACCAGCCAGAGA
* * * * * *
15065858 GATAGAATGCGCAAGTCGGGGATCGCCCCGATCCCCCCCTGTGTTCTGTCGATCCTACTGCTGGT
66 GACAGAATGCGCAAGCCGAGGATCGCCCCGATCCCACCCTGTGTGCTGTCAATCCTA-TGCTGGT
* *
15065923 CCTGCTGCATCAACCCTCGATCTGATCTGATCTTAGACTAAAAATGAATGAGACTTTCTTACGCT
130 CCTGCTGCATCAACCCTCGATCCGATCTAATCTTAGACTAAAAATGAATGAGACTTTCTTACGCT
15065988 AG
195 AG
*
15065990 GGATGAACTCCGTATGCCTAAGTCAACCCAAGAAACGAGCGTACGGGCGCTCAACCAGCCAGAGA
1 GGATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTACGGGCGCTCAACCAGCCAGAGA
* * **
15066055 GGCAGAATGTGCAAGCCGAGGATCAG-CCCGATCCCATTCTGTGTGCTGTCAATCTCGT-TGC-G
66 GACAGAATGCGCAAGCCGAGGATC-GCCCCGATCCCACCCTGTGTGCTGTCAATC-C-TATGCTG
*
15066117 AGTCCTG-TGACCA-CAACCCTCGATCCGGTCTAATCTTAGACT
128 -GTCCTGCTG--CATCAACCCTCGATCCGATCTAATCTTAGACT
15066159 GGGAATAAAC
Statistics
Matches: 146, Mismatches: 17, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
196 3 0.02
197 138 0.95
198 4 0.03
199 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.24, T:0.22
Consensus pattern (196 bp):
GGATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTACGGGCGCTCAACCAGCCAGAGA
GACAGAATGCGCAAGCCGAGGATCGCCCCGATCCCACCCTGTGTGCTGTCAATCCTATGCTGGTC
CTGCTGCATCAACCCTCGATCCGATCTAATCTTAGACTAAAAATGAATGAGACTTTCTTACGCTA
G
Found at i:15067041 original size:26 final size:26
Alignment explanation
Indices: 15067005--15067057 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15066995 CTAGTCCGAT
*
15067005 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
*
15067031 CTTAGACTGGGAATAAACTCCTTATG
1 CTTAGACTGGGAATAAACTCCATATG
15067057 C
1 C
15067058 CTAAGTCGAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:15071310 original size:159 final size:159
Alignment explanation
Indices: 15071016--15071310 Score: 396
Period size: 159 Copynumber: 1.9 Consensus size: 159
15071006 CCAGTTCAAT
* ** * * *
15071016 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAACGAGCGTGCGGGAACTGAGC
1 CTTAGACTGGGAATGAACTCCGCATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGAACTCAAC
* **
15071081 CAATCGAAGAGGCATAATGCTTAAGTCGGGGATCGACCCGATCCGCCTCTGCGTGCTACCGATCC
66 CAATCGAAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGATCCGCCTCTGCGTGCTACCGATCC
15071146 CGCTGCCACAACCCTCAGTCTGATTGGGG
131 CGCTGCCACAACCCTCAGTCTGATTGGGG
* *
15071175 CTTAGACAT-GGAATGAACTCTGCATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAA
1 CTTAGAC-TGGGAATGAACTCCGCATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGAACTCAA
* * * * **
15071239 TCGATCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGATCC-CCTACTGTGTGCTGTCGAT
65 CCAATCGAAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGATCCGCCT-CTGCGTGCTACCGAT
*
15071303 CCTGCTGC
129 CCCGCTGC
15071311 TAGTCCTGCT
Statistics
Matches: 116, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
158 3 0.03
159 112 0.97
160 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCGCATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGAACTCAAC
CAATCGAAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGATCCGCCTCTGCGTGCTACCGATCC
CGCTGCCACAACCCTCAGTCTGATTGGGG
Found at i:15072436 original size:26 final size:26
Alignment explanation
Indices: 15072384--15072436 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15072374 CCAATCCGAT
* *
15072384 CTTAGACTGAGAATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTCCGCATG
*
15072410 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGAGAATGAACTCCGCATG
15072436 C
1 C
15072437 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGCATG
Found at i:15072549 original size:12 final size:12
Alignment explanation
Indices: 15072529--15072558 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
15072519 CCTTTTGCAT
15072529 GCTACCGATCCC
1 GCTACCGATCCC
*
15072541 GCTATCGATCCC
1 GCTACCGATCCC
15072553 GCTACC
1 GCTACC
15072559 ACAACCCTCG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.17, C:0.47, G:0.17, T:0.20
Consensus pattern (12 bp):
GCTACCGATCCC
Found at i:15073821 original size:26 final size:28
Alignment explanation
Indices: 15073789--15073844 Score: 80
Period size: 26 Copynumber: 2.1 Consensus size: 28
15073779 CGTCGATCTT
* *
15073789 AGACTGGGAAT-TAACT-CGTATGCTTA
1 AGACTGGGAATAAAACTCCGTATGCCTA
15073815 AGACTGGGAATAAAACTCCGTATGCCTA
1 AGACTGGGAATAAAACTCCGTATGCCTA
15073843 AG
1 AG
15073845 TCAACCCACG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
26 11 0.42
27 4 0.15
28 11 0.42
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25
Consensus pattern (28 bp):
AGACTGGGAATAAAACTCCGTATGCCTA
Found at i:15076945 original size:171 final size:171
Alignment explanation
Indices: 15076700--15077011 Score: 385
Period size: 171 Copynumber: 1.8 Consensus size: 171
15076690 CTCCATATGC
* * ** * * *
15076700 TTAGACTGGGAATGAACTCTGTATGTCTAAGTCAACCCACGAAATGAGCGTGCGAGCACTGAGCC
1 TTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACAAGCATGCGAGCACTCAACC
* * * * * *
15076765 GATCGGAGAGGCATAATGCGCAAGCCGGGGATTGGCCCGGTC-CCCCTCTACGTGCTACCGATCC
66 AACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCTCCCC-CTACATGCTACCAATCC
15076829 CGCTGCCGGTCCAGCTACCACAACCCTTGGTCCGACTGGGGT
130 CGCTGCCGGTCCAGCTACCACAACCCTTGGTCCGACTGGGGT
* * **
15076871 TTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACAAGCATGTGGGTGCTCAAC
1 TTAGAC-TGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACAAGCATGCGAGCACTCAAC
* * * * *
15076935 CAACCGGAGAGGCAGAATGTGTAAGTCGGGGATCGGCCCGGTCTCCCCCTGCATGCTGCCAATCC
65 CAACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCTCCCCCTACATGCTACCAATCC
*
15077000 CGCTGCGGGTCC
130 CGCTGCCGGTCC
15077012 TGCTGTCGCA
Statistics
Matches: 116, Mismatches: 23, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
171 111 0.96
172 5 0.04
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (171 bp):
TTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACAAGCATGCGAGCACTCAACC
AACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCTCCCCCTACATGCTACCAATCCC
GCTGCCGGTCCAGCTACCACAACCCTTGGTCCGACTGGGGT
Found at i:15079327 original size:26 final size:26
Alignment explanation
Indices: 15079298--15079350 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15079288 CCGATCCGAT
*
15079298 CTTATACTAGGAATGAACTCCGTATG
1 CTTAAACTAGGAATGAACTCCGTATG
* *
15079324 CTTAAACTGGGAATGAACTTCGTATG
1 CTTAAACTAGGAATGAACTCCGTATG
15079350 C
1 C
15079351 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAAACTAGGAATGAACTCCGTATG
Found at i:15085850 original size:148 final size:148
Alignment explanation
Indices: 15085582--15085851 Score: 335
Period size: 148 Copynumber: 1.8 Consensus size: 148
15085572 CCAATTGGGG
*
15085582 CTTAGACCGAGAATGAACTCCGCATGCCTAAGTCAACCCACGAAACAAGCGTACGGGCGCTCAAC
1 CTTAGACCGAGAATGAACTCCGCATGCCTAAGTCAACCCACGAAACAAGCGTACAGGCGCTCAAC
* * * *
15085647 TGACCGGAGAGGCAGGATGTGCAAGCCAAGGATCGGCCTGGTCCCCCTCTGCATGCTGCAGTCGA
66 CGACCGGAGAGGCAGAATGAGCAAGCCAAGGATCGGCCTGATCCCCCTCTGCATGCTGCAGTCGA
15085712 TCCCGCTATCGGTCCGAT
131 TCCCGCTATCGGTCCGAT
* * * * ** * * * * *
15085730 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGGGTGTGCAGGCGTTGAGC
1 CTTAGACCGAGAATGAACTCCGCATGCCTAAGTCAACCCACGAAACAAGCGTACAGGCGCTCAAC
* * ** *
15085795 CGATCGGAGAGGCATAATGAGCAAGCCGGGGATCGATCC-GATCCCCCTCTGCATGCT
66 CGACCGGAGAGGCAGAATGAGCAAGCCAAGGATCG-GCCTGATCCCCCTCTGCATGCT
15085852 ACCAATCCCA
Statistics
Matches: 100, Mismatches: 21, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
148 98 0.98
149 2 0.02
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.18
Consensus pattern (148 bp):
CTTAGACCGAGAATGAACTCCGCATGCCTAAGTCAACCCACGAAACAAGCGTACAGGCGCTCAAC
CGACCGGAGAGGCAGAATGAGCAAGCCAAGGATCGGCCTGATCCCCCTCTGCATGCTGCAGTCGA
TCCCGCTATCGGTCCGAT
Found at i:15087274 original size:148 final size:147
Alignment explanation
Indices: 15086985--15087258 Score: 358
Period size: 148 Copynumber: 1.9 Consensus size: 147
15086975 GGCTTAGATC
*
15086985 GGGAATGAACTCCGCATGCCTAAGTCAACCCACGAAACGAGCATAAGGGCACTCAGCCGATCGGA
1 GGGAATGAACTCCGCATGCCTAAGTCAACCAACGAAACGAGCATAAGGGCACTCAGCCGATCGGA
* * *
15087050 GAGGCAGGATGCACAAGTCGAGGATCGGCCTGGTCCCCCTCTGCATGCTGCTGCCGATCCCGCTA
66 GAGGCAGAATGCACAAGCCGAGGATCGGCCTGGTCCCCCTCTGCA-GCTGCTGCCGATCCCACTA
*
15087115 TCGATCCGATCTTAAACT
130 GCGATCCGATCTTAAACT
* * * * * * *
15087133 GGGAATGAACTCTGTATGCCTAAGTGAACCAATGAAACGAGCGTACGGGCACTGAGCCGATCGGA
1 GGGAATGAACTCCGCATGCCTAAGTCAACCAACGAAACGAGCATAAGGGCACTCAGCCGATCGGA
* * *
15087198 GAGGCATAATGCACAAGCC-AGGGATCGG-CTCGGTTCCCCTCTGC-G-TGCTGTCGATCCCACT
66 GAGGCAGAATGCACAAGCCGA-GGATCGGCCT-GGTCCCCCTCTGCAGCTGCTGCCGATCCCACT
15087259 GCGGGTCCCT
Statistics
Matches: 110, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
145 14 0.13
146 1 0.01
147 3 0.03
148 92 0.84
ACGTcount: A:0.25, C:0.29, G:0.28, T:0.18
Consensus pattern (147 bp):
GGGAATGAACTCCGCATGCCTAAGTCAACCAACGAAACGAGCATAAGGGCACTCAGCCGATCGGA
GAGGCAGAATGCACAAGCCGAGGATCGGCCTGGTCCCCCTCTGCAGCTGCTGCCGATCCCACTAG
CGATCCGATCTTAAACT
Found at i:15089355 original size:148 final size:148
Alignment explanation
Indices: 15089087--15089357 Score: 362
Period size: 148 Copynumber: 1.8 Consensus size: 148
15089077 CCGATTGGGG
* *
15089087 CTTAGACCGAGAATGAACTCCGCATGCCTAAGTCAACCCACGAAACAAGCGTGCGAGCGCTCAAC
1 CTTAGACCGAGAATGAACTCCGCATGCCTAAGTCAACCCACAAAACAAGCATGCGAGCGCTCAAC
* * * * * *
15089152 TGGCCGGAGAGGCAGGATGCGCAAGCCGAGGATCGGCTCAATCCCCCTCTGCGTGCTGCTACCGA
66 CGACCAGAGAGGCAGAATGCACAAGCCGAGGATCGGCCCAATCCCCCTCTGCGTGCTGCTACCGA
15089217 TCCCACAGCCGGTTTGAT
131 TCCCACAGCCGGTTTGAT
* * * * * *
15089235 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCATGCGGGCGCTGAAC
1 CTTAGACCGAGAATGAACTCCGCATGCCTAAGTCAACCCACAAAACAAGCATGCGAGCGCTCAAC
* * * * * *
15089300 CGATCAGAGAGGCATAATGCATAAGTCGTGGATCGGCCCGATCCCCCTCTGCGTGCTG
66 CGACCAGAGAGGCAGAATGCACAAGCCGAGGATCGGCCCAATCCCCCTCTGCGTGCTG
15089358 TCGATCCCGC
Statistics
Matches: 103, Mismatches: 20, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
148 103 1.00
ACGTcount: A:0.25, C:0.31, G:0.27, T:0.17
Consensus pattern (148 bp):
CTTAGACCGAGAATGAACTCCGCATGCCTAAGTCAACCCACAAAACAAGCATGCGAGCGCTCAAC
CGACCAGAGAGGCAGAATGCACAAGCCGAGGATCGGCCCAATCCCCCTCTGCGTGCTGCTACCGA
TCCCACAGCCGGTTTGAT
Found at i:15089776 original size:197 final size:197
Alignment explanation
Indices: 15089428--15089789 Score: 451
Period size: 197 Copynumber: 1.8 Consensus size: 197
15089418 TGAACTTTGT
* * * *
15089428 ATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCACTCAACCGGCCAAAGAGGTAGAATGCGCA
1 ATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCGGCCAAAGAGGCAAAATGCGCA
* * * * * **
15089493 AGTTGGGGATCGACCTGGTCCCCCCCTACGTGCTATCGATCCTGCTGCTGGTCCTGCTGCCGTAA
66 AGTCGGGGATCGACCCGATCCCCCCCTACGTGCTATCGATCCCGCTGCTGGTCCTGCTACCACAA
* **
15089558 CCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAATGAGACTTGCTTAGATTGGGGATGAACTCC
131 CCCTCGATCCAATTCGATCTTAGACTGGGAATGAATGAGACTTGCTTAGATTGGGGATGAACTCC
15089623 AG
196 AG
* * ** * *
15089625 ATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCGGCCAGAA-AGGCAAAATGTGC
1 ATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCGGCCA-AAGAGGCAAAATGCGC
* * *
15089689 AAGTCGGGGATCGCCCCGATCCCCCCCTCCGTGCTGTCGATCCCGCTG-TGGGTCCTGCTACCAC
65 AAGTCGGGGATCGACCCGATCCCCCCCTACGTGCTATCGATCCCGCTGCT-GGTCCTGCTACCAC
* *
15089753 AATCCTTGATCCAA-TCTGATCTTAGACTGGGAATGAA
129 AACCCTCGATCCAATTC-GATCTTAGACTGGGAATGAA
15089790 CTCCGTATGC
Statistics
Matches: 137, Mismatches: 25, Indels: 6
0.82 0.15 0.04
Matches are distributed among these distances:
196 3 0.02
197 132 0.96
198 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (197 bp):
ATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAACCGGCCAAAGAGGCAAAATGCGCA
AGTCGGGGATCGACCCGATCCCCCCCTACGTGCTATCGATCCCGCTGCTGGTCCTGCTACCACAA
CCCTCGATCCAATTCGATCTTAGACTGGGAATGAATGAGACTTGCTTAGATTGGGGATGAACTCC
AG
Found at i:15090657 original size:26 final size:26
Alignment explanation
Indices: 15090628--15090680 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15090618 CCGGTCCAAT
*
15090628 CTTAGACTGGGAATGAAGTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15090654 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15090680 C
1 C
15090681 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15093498 original size:26 final size:26
Alignment explanation
Indices: 15093460--15093512 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15093450 TCGGTCTGAT
*
15093460 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15093486 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15093512 C
1 C
15093513 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:15093842 original size:170 final size:170
Alignment explanation
Indices: 15093485--15093844 Score: 393
Period size: 171 Copynumber: 2.1 Consensus size: 170
15093475 AACTCCGTAT
* * * *
15093485 GCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCAATGAAACGAGCATGCGAGCACTGAG
1 GCTTAGACT-GGAATGAACTCCATATGCCTAAGCCAACCAATGAAACGAGCATGCGAGCACTCAA
* * * *
15093550 CCAGTTGAAGAGGCATAATGCGCAAGTCGGGGATCAGCTCGATCCCCCTCTGCATGCTGCCGATC
65 CCAGTTGAAGAGGCAGAATACGCAAGTCAGGGATCAGCCCGATCCCCCTCTGCATGCTGCCGATC
* * *
15093615 CCACTGCCGGTCCTGTTGCCACAACCCTCGGTCCGACTGGG
130 CCACTACCGGTCCTGCTGCCACAACCCTCGGTCCGACTGGA
* * *
15093656 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAG-AGTGCGGGCGCTCA
1 GCTTAGAC-TGGAATGAACTCCATATGCCTAAGCCAACCAATGAAACGAGCA-TGCGAGCACTCA
* * * * * *
15093720 ATCAGTTGGAGAGGTAGAATACGCAAGTTAGGGATCGGCCCGGTCCCCC-CTGCATGCTGCCGAT
64 ACCAGTTGAAGAGGCAGAATACGCAAGTCAGGGATCAGCCCGATCCCCCTCTGCATGCTGCCGAT
** * * ** * *
15093784 CCTGCTACTGGTCCTGCTGTCGTAACCCTCGGTCTGGTCT-GA
129 CCCACTACCGGTCCTGCTGCCACAACCCTCGGTC-CGACTGGA
*
15093826 TCTTAGACTGGGAATGAAC
1 GCTTAGACT-GGAATGAAC
15093845 GAGACTTGCT
Statistics
Matches: 156, Mismatches: 29, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
169 1 0.01
170 59 0.38
171 95 0.61
172 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (170 bp):
GCTTAGACTGGAATGAACTCCATATGCCTAAGCCAACCAATGAAACGAGCATGCGAGCACTCAAC
CAGTTGAAGAGGCAGAATACGCAAGTCAGGGATCAGCCCGATCCCCCTCTGCATGCTGCCGATCC
CACTACCGGTCCTGCTGCCACAACCCTCGGTCCGACTGGA
Found at i:15096225 original size:19 final size:19
Alignment explanation
Indices: 15096201--15096244 Score: 88
Period size: 19 Copynumber: 2.3 Consensus size: 19
15096191 ATTAAGGGCC
15096201 CGCACCTGAGCCCAGGCTA
1 CGCACCTGAGCCCAGGCTA
15096220 CGCACCTGAGCCCAGGCTA
1 CGCACCTGAGCCCAGGCTA
15096239 CGCACC
1 CGCACC
15096245 ATGCAAACCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.20, C:0.45, G:0.25, T:0.09
Consensus pattern (19 bp):
CGCACCTGAGCCCAGGCTA
Found at i:15099337 original size:117 final size:117
Alignment explanation
Indices: 15099121--15099373 Score: 292
Period size: 117 Copynumber: 2.2 Consensus size: 117
15099111 TATTACCTTG
* * * * * *
15099121 GGATGTTGCCTCATACACCATCAAGATGCTGGCCTATCGATAGCATCTGGCCTTTGGTTGGTGCA
1 GGATGTTGCCTCAGACACCATCAAGATGCTAGCCAATCAATAGCATCTAGCCTTTGGCTGGTGCA
* * * * *
15099186 GCCAATCGCATGTAACACTATCGATAGTAAATGCTCACTTATTGTTTCCTAA
66 GCCAATCGCATGCAACACTATCGAGAGCAAATGCTCACCTATTGTTGCCTAA
* *
15099238 GGATGTTGCCTCAGACACTATCAAGATGCTAGCCAATCAATAGCATTTAGCCTTTGGCTGGTGCA
1 GGATGTTGCCTCAGACACCATCAAGATGCTAGCCAATCAATAGCATCTAGCCTTTGGCTGGTGCA
** * * ** *
15099303 GCCAATCGTGTGCAACACTATCCG-GGGCAGATGCTGGCCTATTGTTGCCTTA
66 GCCAATCGCATGCAACACTAT-CGAGAGCAAATGCTCACCTATTGTTGCCTAA
* *
15099355 GGATGTTACCTTAGACACC
1 GGATGTTGCCTCAGACACC
15099374 TTTCGAGCGG
Statistics
Matches: 112, Mismatches: 23, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
117 110 0.98
118 2 0.02
ACGTcount: A:0.24, C:0.25, G:0.23, T:0.29
Consensus pattern (117 bp):
GGATGTTGCCTCAGACACCATCAAGATGCTAGCCAATCAATAGCATCTAGCCTTTGGCTGGTGCA
GCCAATCGCATGCAACACTATCGAGAGCAAATGCTCACCTATTGTTGCCTAA
Found at i:15099785 original size:129 final size:129
Alignment explanation
Indices: 15099533--15099778 Score: 366
Period size: 129 Copynumber: 1.9 Consensus size: 129
15099523 TTGTTACCCA
*
15099533 GGATGTTACCTCAGGCACCATCAGGATGCTAGCCCATCGATAGCATCTGACTTTCGGCTAGTGCA
1 GGATGTTACCTCAGGCACCATCAGGATGCTAGCCCATCGACAGCATCTGACTTTCGGCTAGTGCA
* **
15099598 GTCAATCATGTGCAACATTATCAATGGTAGATGCCAGCATGTTGTTACCTCAAGATGTTGCCTC
66 GTCAATCATGTGCAACACTATCAACAGTAGATGCCAGCATGTTGTTACCTCAAGATGTTGCCTC
* * * * * *
15099662 GGATGTTACCTCAGGCACTATCAGGATGTTGGCCTATCGACAGCATTTGGCTTTCGGCTAGTGCA
1 GGATGTTACCTCAGGCACCATCAGGATGCTAGCCCATCGACAGCATCTGACTTTCGGCTAGTGCA
** **
15099727 GTCAATCATGTGCAACACTATTGACAGTAGATGCCAGTGTGTTGTTACCTCA
66 GTCAATCATGTGCAACACTATCAACAGTAGATGCCAGCATGTTGTTACCTCA
15099779 GAATGTTATC
Statistics
Matches: 103, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
129 103 1.00
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.29
Consensus pattern (129 bp):
GGATGTTACCTCAGGCACCATCAGGATGCTAGCCCATCGACAGCATCTGACTTTCGGCTAGTGCA
GTCAATCATGTGCAACACTATCAACAGTAGATGCCAGCATGTTGTTACCTCAAGATGTTGCCTC
Found at i:15106349 original size:50 final size:50
Alignment explanation
Indices: 15106274--15106373 Score: 200
Period size: 50 Copynumber: 2.0 Consensus size: 50
15106264 TTATTGGTGT
15106274 GGCCAATCATTTCCACCACCATCGGCTATAGATGCTAGCCCATTGTTACC
1 GGCCAATCATTTCCACCACCATCGGCTATAGATGCTAGCCCATTGTTACC
15106324 GGCCAATCATTTCCACCACCATCGGCTATAGATGCTAGCCCATTGTTACC
1 GGCCAATCATTTCCACCACCATCGGCTATAGATGCTAGCCCATTGTTACC
15106374 CCTGGATGTT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.24, C:0.34, G:0.16, T:0.26
Consensus pattern (50 bp):
GGCCAATCATTTCCACCACCATCGGCTATAGATGCTAGCCCATTGTTACC
Found at i:15113642 original size:295 final size:295
Alignment explanation
Indices: 15113218--15113932 Score: 710
Period size: 295 Copynumber: 2.4 Consensus size: 295
15113208 CCTCTGGATA
* * * * * * * * * *
15113218 TTACCTTGGACACCATCAAAATGCTAGCCCATCAACAGCCTTTAGCCCTTGGCTAGTGCAGCCAA
1 TTACCTTAGACACCAACGAGATGTTAGCCCTTCAATAGCATCTAGCCCTTGGCTAGTGCTGCCAA
* * * * * * *
15113283 TCACATCTAACACCATCAGTGATGGATGCTGGCCCTTTGTTGCCT-AGGGATGTTGCCACAGACA
66 TCACATCTAACACCATCAATGGTAGATGCTGGCCCATTGTTGCCTCA-GAATGTTACCTCAGACA
** *
15113347 CCTCTTCGACA-GGTGCAGGCCTCTC-GATGCTTAATGTTGCCTCGAGCTCCTCCTTGGT-GGAA
130 -CTCTTCGA-AGGGTGCAGGCCTCTCAG-TGCCCAATATTGCCTCGAGCTCCTCCTTGGTCGG-A
* * * * * ** *
15113409 GTCTAACACTTGATCCCCCAAACATCTCTTTGGTCTTTGGTTGGTGCAACCAATTGCATCCACTA
191 GCCTAACACTTGATCCCCCAAACACCTCTTTGGTCCTTGGCTAGTGCAACCAATCACATCCACCA
* * * **
15113474 CCATCGA-TGGTAGATGCTGGCCCATTCTT-GCATGAGATG
256 ACAT-GAGTGGTAGATGCCGGCCCATTCTTACCACAAGATG
* ** ** *
15113513 TTACCTTAGACACCAACGGGATGTTAG-CCTATTGATAGTGTCTAGCCCTTGGCTGGTGCTGCCA
1 TTACCTTAGACACCAACGAGATGTTAGCCCT-TCAATAGCATCTAGCCCTTGGCTAGTGCTGCCA
* * ** * *
15113577 ATCACATCCAACACCATCAATGGTAGATGTTGGCTAATTATTGCCTCAAAATGTTACCTCAGACA
65 ATCACATCTAACACCATCAATGGTAGATGCTGGCCCATTGTTGCCTCAGAATGTTACCTCAGACA
* ** * * *
15113642 CTCTTCTAATGGGTGTTGGCCTCTCAGTGCCCGATATTGCCTCGAGCTTCTCCTTGGTCGGTGCC
130 CTCTTCGAA-GGGTGCAGGCCTCTCAGTGCCCAATATTGCCTCGAGCTCCTCCTTGGTCGGAGCC
* * **
15113707 TAGCGCTTGATCCCCCAAACACCTCTTTGGTCCTTGGCTAGTGTGACCAATCACATCCACCAACA
194 TAACACTTGATCCCCCAAACACCTCTTTGGTCCTTGGCTAGTGCAACCAATCACATCCACCAACA
* * * * *
15113772 TTAGTGGTAGATGCCGGCTCGTTGTTACCCCAAGATG
259 TGAGTGGTAGATGCCGGCCCATTCTTACCACAAGATG
* *
15113809 TTACCTTAGACACCATCGAGATGTTGGCCCTTCAATAGCATCTAGCCCTTGGCTAGTG-TGGCCA
1 TTACCTTAGACACCAACGAGATGTTAGCCCTTCAATAGCATCTAGCCCTTGGCTAGTGCT-GCCA
*
15113873 ATCACATCTAACACCATCAACT-GAAGATGCTGGCCCATTGTTGCCTCAGAATGTTACCTC
65 ATCACATCTAACACCATCAA-TGGTAGATGCTGGCCCATTGTTGCCTCAGAATGTTACCTC
15113933 GAGCTTTTCT
Statistics
Matches: 335, Mismatches: 74, Indels: 21
0.78 0.17 0.05
Matches are distributed among these distances:
293 1 0.00
294 10 0.03
295 209 0.62
296 111 0.33
297 4 0.01
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (295 bp):
TTACCTTAGACACCAACGAGATGTTAGCCCTTCAATAGCATCTAGCCCTTGGCTAGTGCTGCCAA
TCACATCTAACACCATCAATGGTAGATGCTGGCCCATTGTTGCCTCAGAATGTTACCTCAGACAC
TCTTCGAAGGGTGCAGGCCTCTCAGTGCCCAATATTGCCTCGAGCTCCTCCTTGGTCGGAGCCTA
ACACTTGATCCCCCAAACACCTCTTTGGTCCTTGGCTAGTGCAACCAATCACATCCACCAACATG
AGTGGTAGATGCCGGCCCATTCTTACCACAAGATG
Found at i:15114123 original size:248 final size:248
Alignment explanation
Indices: 15113711--15114162 Score: 561
Period size: 248 Copynumber: 1.8 Consensus size: 248
15113701 GGTGCCTAGC
* *
15113711 GCTTGATCCCCCAAACACCTCTTTGGTCCTTGGCTAGTGTGACCAATCACATCCACCAACATTAG
1 GCTTGATCCCCCAAACACCTCTTTGGTCCTTGGCTAGTGTAACCAATCAAATCCACCAACATTAG
* * * * * * *
15113776 TGGTAGATGCCGGCTCGTTGTTACCCCAAGATGTTACCTTAGACACCATCGAGATGTTGGCCCTT
66 CGGTAGATGCCGGCCCATTGTTACCCCAAGATGTTACCTCAGACACCACCGAGATGTTGACCCAT
* * *
15113841 CAATAGCATCTAGCCCTTGGCTAGTGTGGCCAATCACATCTAACACCATCAACT-GAAGATGCTG
131 CAACAACATCTAGCCCTTGGCTAGTGTAGCCAATCACATCTAACACCATCAA-TGGAAGATGCTG
15113905 GCCCATTGTTGCCTCAGAATGTTACCTCGAGCTTTTCTTTAGAAGGTGCTTGGT
195 GCCCATTGTTGCCTCAGAATGTTACCTCGAGCTTTTCTTTAGAAGGTGCTTGGT
* * * **
15113959 GCTTGATGCCCCAAACACCTCTTTGGTCCTTGGCTGGTGTAACCAATTAAATCTGCCATA-ATT-
1 GCTTGATCCCCCAAACACCTCTTTGGTCCTTGGCTAGTGTAACCAATCAAATCCACCA-ACATTA
** * * * * *
15114022 GACGGTAGATGTTGGCCCATTGTTGCCTCGAGATGTTACCTCAGACACCACCGGGATGTTGACTC
65 G-CGGTAGATGCCGGCCCATTGTTACCCCAAGATGTTACCTCAGACACCACCGAGATGTTGACCC
* * * * * * *
15114087 ATCGACAACGTCTGGCCCTTGGCTAGT-TCAGCCAATCGCATCTAACACCATCGATGGTAGATGT
129 ATCAACAACATCTAGCCCTTGGCTAGTGT-AGCCAATCACATCTAACACCATCAATGGAAGATGC
15114151 TGGCCCATTGTT
193 TGGCCCATTGTT
15114163 ATGTTGAGAT
Statistics
Matches: 169, Mismatches: 31, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
247 3 0.02
248 165 0.98
249 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.29
Consensus pattern (248 bp):
GCTTGATCCCCCAAACACCTCTTTGGTCCTTGGCTAGTGTAACCAATCAAATCCACCAACATTAG
CGGTAGATGCCGGCCCATTGTTACCCCAAGATGTTACCTCAGACACCACCGAGATGTTGACCCAT
CAACAACATCTAGCCCTTGGCTAGTGTAGCCAATCACATCTAACACCATCAATGGAAGATGCTGG
CCCATTGTTGCCTCAGAATGTTACCTCGAGCTTTTCTTTAGAAGGTGCTTGGT
Found at i:15117550 original size:297 final size:296
Alignment explanation
Indices: 15116911--15117554 Score: 640
Period size: 295 Copynumber: 2.2 Consensus size: 296
15116901 TGATCCTTTG
* * * * * * *
15116911 AACACCACTTTGGTCCTTGGCTAGTGTGGCCAATCATATCCACCA-C--CATTGGCGGTGAATGT
1 AACACCACTTTGATCCTTGACTAGTGCGGCCAATCGTATCCACCATCATCAATAGC--AG-ATGT
* *
15116973 TGGCCCATTGTTGCCCTTGGATGTTACCTCAGACACCATCAAGATGCTGGCCCCATCAATAGCAT
63 TGGCCCATTGTTGCCATTGGATGTTACCTCAGACACCATCAAGATGCTAG-CCCATCAATAGCAT
* * * * *
15117038 CTAGCCCTTGGTGGGTGCAACCAATCGTGTCTAGCACCATTGGCAGTAGATGTTGGCCTGTTGTT
127 CTAGCCCTTAGTGGGTGCAACCAATCGTGTCTAACACCATCGGCAGCAGATGTTGGCCTGTTATT
* * * * *
15117103 GCCCTAAGATGTTGCCTGGCACACCTCTCTAGCGGGCACTAGCCCTTCAGTGCCCGATGTTGCCT
192 GCCCTAAGATGTTACCTAGCACACCTCACTAGCAGGCACTAGCCCCTCAGTGCCCGATGTTGCCT
* *
15117168 TAAGCTCCTCTTTGCTGAGTGCCGAGCATTTCATCCCCCA
257 TAAGCTCCTCCTTGCTGAGTGCCGAGCACTTCATCCCCCA
* ** *
15117208 AACACCACTTTGGTCCTTGGTTGGTGCGGCCAATCGTATCCACCATCATCAATAGCAGATGTTGG
1 AACACCACTTTGATCCTTGACTAGTGCGGCCAATCGTATCCACCATCATCAATAGCAGATGTTGG
* * * * * * *
15117273 CCCATTGTTGCCATTGGATGTTACGTTAGACACCATCAGGATGCTAG-TCGTCGATAGCATGTAG
66 CCCATTGTTGCCATTGGATGTTACCTCAGACACCATCAAGATGCTAGCCCATCAATAGCATCTAG
* * * * * *
15117337 CCTTTAGTTGGTGCGACCAATTGTGTCTAACACCATCGGTAGCAGAT-TCTGGCTTGTTATTG-C
131 CCCTTAGTGGGTGCAACCAATCGTGTCTAACACCATCGGCAGCAGATGT-TGGCCTGTTATTGCC
* * * ** * * *
15117400 CTCAGGATGTTACCTTAG-ACACCTCACTGGCATGTGCTGGCCCCTC-GATGCTCGATGTTTCCT
195 CT-AAGATGTTACC-TAGCACACCTCACTAGCAGGCACTAGCCCCTCAG-TGCCCGATGTTGCCT
* * * * * *
15117463 TGAGCTCCTCCTTGGTGGGTGCCTAGCACTTGATCCCCTA
257 TAAGCTCCTCCTTGCTGAGTGCCGAGCACTTCATCCCCCA
* * * * *
15117503 AACACC-TTTTTATCCTTGACTAGTGCTGCCAATCGTGTCCACCACCATCAAT
1 AACACCACTTTGATCCTTGACTAGTGCGGCCAATCGTATCCACCATCATCAAT
15117555 GACAGACGCT
Statistics
Matches: 283, Mismatches: 57, Indels: 17
0.79 0.16 0.05
Matches are distributed among these distances:
294 42 0.15
295 142 0.50
296 2 0.01
297 90 0.32
298 2 0.01
300 5 0.02
ACGTcount: A:0.20, C:0.29, G:0.23, T:0.29
Consensus pattern (296 bp):
AACACCACTTTGATCCTTGACTAGTGCGGCCAATCGTATCCACCATCATCAATAGCAGATGTTGG
CCCATTGTTGCCATTGGATGTTACCTCAGACACCATCAAGATGCTAGCCCATCAATAGCATCTAG
CCCTTAGTGGGTGCAACCAATCGTGTCTAACACCATCGGCAGCAGATGTTGGCCTGTTATTGCCC
TAAGATGTTACCTAGCACACCTCACTAGCAGGCACTAGCCCCTCAGTGCCCGATGTTGCCTTAAG
CTCCTCCTTGCTGAGTGCCGAGCACTTCATCCCCCA
Found at i:15121619 original size:197 final size:197
Alignment explanation
Indices: 15121284--15121678 Score: 675
Period size: 197 Copynumber: 2.0 Consensus size: 197
15121274 CGGGTAGTTG
* *
15121284 CCTCTAACACCATTGATAGCATCTAGTCTTTGGCTGGTGAGGCCAATCACATCCAACACCATCAA
1 CCTCTAACACCATTGATAGCATCTAGCCTTTAGCTGGTGAGGCCAATCACATCCAACACCATCAA
* * *
15121349 CGATGGATGCTGGCCTATTGTTACCCCAGGATGTTGCCTTAGACACCTTCCAAGCAGGTGTTGGC
66 CGATGGATGCTGGCCCATTGTTACCCCAGGATGTTGCCTTAGACACCTCCCAAGCAGGTGCTGGC
* *
15121414 CCCTCAGTGCCTAATGTTGCCTTGAACTCCTCTTTGGTAGGTGCCTGGCACTTGATCTCGGGAAC
131 CCCTCAGTGCCTAATGTTGCCTTGAACTCCTCTTTGGCAGGTGCCTGGCACTTGATCTCGAGAAC
15121479 AC
196 AC
*
15121481 CCTCTAACACCATTGATAGCATCTGGCCTTTAGCTGGTGAGGCCAATCACATCCAACACCATCAA
1 CCTCTAACACCATTGATAGCATCTAGCCTTTAGCTGGTGAGGCCAATCACATCCAACACCATCAA
* *
15121546 CGGTGGATGCTGGCCCATTGTTGCCCCAGGATGTTGCCTTAGACACCTCCC-AGACAGGTGCTGG
66 CGATGGATGCTGGCCCATTGTTACCCCAGGATGTTGCCTTAGACACCTCCCAAG-CAGGTGCTGG
*
15121610 CCCCTCAGTGCCTAATGTTGCCTTGAACTCCTCTTTGGCAGGTGCCTGGCGCTTGATCTCGAGAA
130 CCCCTCAGTGCCTAATGTTGCCTTGAACTCCTCTTTGGCAGGTGCCTGGCACTTGATCTCGAGAA
15121675 CAC
195 CAC
15121678 C
1 C
15121679 TTTTTAGGGC
Statistics
Matches: 186, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
196 2 0.01
197 184 0.99
ACGTcount: A:0.21, C:0.30, G:0.23, T:0.26
Consensus pattern (197 bp):
CCTCTAACACCATTGATAGCATCTAGCCTTTAGCTGGTGAGGCCAATCACATCCAACACCATCAA
CGATGGATGCTGGCCCATTGTTACCCCAGGATGTTGCCTTAGACACCTCCCAAGCAGGTGCTGGC
CCCTCAGTGCCTAATGTTGCCTTGAACTCCTCTTTGGCAGGTGCCTGGCACTTGATCTCGAGAAC
AC
Found at i:15123526 original size:296 final size:295
Alignment explanation
Indices: 15122940--15123559 Score: 622
Period size: 296 Copynumber: 2.1 Consensus size: 295
15122930 ACATCATTAG
* * * * * * *
15122940 GATGCTAGCCCATCGATAGCATTTGTCCCTTAGGGGGTGTAGCTAATTGTGTCCAATACCATCGA
1 GATGCTAGCCCATCGACAGCATTTGGCCCATAGGGAGTGTAGCCAATTGTATCCAACACCATCGA
** ** * *
15123005 TGATAGATGTTGGCTTGTTGTTGCCGTAGATGATGCCTCGAACACCTCCCTAGTGGGTGCTAGCC
66 CCATAGATGTTGGCCCGTTGTTGCCCTAGATGATGCCTCGAACACCTCCCTAGTAGGTGCTAGCC
* * * **
15123070 CCTCGATGCCTAATGTTGCCTAGAGCTCCTCCTTGGTGGGTGCCTAGTGCTTGATCACCTAAACA
131 CCTCGATGCCTAATGTTGCCTAGAGCTCATCCTTGGTGGATGCCCAGCACTTGATCACCTAAACA
* * * * * *
15123135 CTTCTTTTGTCCTTAGCTACTATGGCCTATCACATCCACCAACATCAGCAACAAATGCTGACCCA
196 CTTCTTTGGTCCTTAGCTACTATGACCAATCACATACACCAACATCAACAACAAATGCTGACCAA
* * *
15123200 TTATTACCCCTACATGTTACCTTGGACACCATCGT
261 TTATTACCCCTACAAGTTACCTTAGACACCATCGA
* *
15123235 GATGCTAGCCCATCGGCAGCATTTGGGCCAT-GGCGAGTGTAGCCAATTGTATCCAACACCATCG
1 GATGCTAGCCCATCGACAGCATTTGGCCCATAGG-GAGTGTAGCCAATTGTATCCAACACCATCG
* ** * *
15123299 ACCATAGATGCTT-GCCCGTTGTTGCCCTGAGATGTTGCCTCGAACACCTTTCTTGTAGGTGCTG
65 ACCATAGATG-TTGGCCCGTTGTTGCCCT-AGATGATGCCTCGAACACCTCCCTAGTAGGTGCTA
* * * *
15123363 GCCCCTCGGTG-CTAGATGTTGCCTCGAGCTCATCCTTTGTGGATGCCCAGCACTTGATCACTTA
128 GCCCCTCGATGCCTA-ATGTTGCCTAGAGCTCATCCTTGGTGGATGCCCAGCACTTGATCACCTA
* * * * * * * **
15123427 GACACCTT-TTTGGT-CTTCGGCTAGTGTGACCAATCACGTACACCATCATTAACAGTAAATGCT
192 AACA-CTTCTTTGGTCCTT-AGCTACTATGACCAATCACATACACCAACATCAACAACAAATGCT
* * * * *
15123490 GGCCAATTGTTACTCTTAGAAGTTGA-CTTAGACACCATCGA
255 GACCAATTATTACCCCTACAAGTT-ACCTTAGACACCATCGA
* ** * *
15123531 GATGCTGGCCTGTCGATAGCGTTTGGCCC
1 GATGCTAGCCCATCGACAGCATTTGGCCC
15123560 TTGGTTCGTG
Statistics
Matches: 259, Mismatches: 59, Indels: 13
0.78 0.18 0.04
Matches are distributed among these distances:
294 2 0.01
295 78 0.30
296 175 0.68
297 4 0.02
ACGTcount: A:0.21, C:0.27, G:0.22, T:0.29
Consensus pattern (295 bp):
GATGCTAGCCCATCGACAGCATTTGGCCCATAGGGAGTGTAGCCAATTGTATCCAACACCATCGA
CCATAGATGTTGGCCCGTTGTTGCCCTAGATGATGCCTCGAACACCTCCCTAGTAGGTGCTAGCC
CCTCGATGCCTAATGTTGCCTAGAGCTCATCCTTGGTGGATGCCCAGCACTTGATCACCTAAACA
CTTCTTTGGTCCTTAGCTACTATGACCAATCACATACACCAACATCAACAACAAATGCTGACCAA
TTATTACCCCTACAAGTTACCTTAGACACCATCGA
Found at i:15126393 original size:296 final size:296
Alignment explanation
Indices: 15125836--15126393 Score: 618
Period size: 296 Copynumber: 1.9 Consensus size: 296
15125826 TGTCCATCAA
* * * * * * *
15125836 CATCAGTGGTAGATGCTGGCCCATTGTTACCCTAGGATGTTGCCTCAAACACCCTTAGGATGCTA
1 CATCAATGGTAGAAGCTGGCCCATTGTTACCCCAGGATGTTACCTCAAACACCATCAAGATGCTA
* * * * * *
15125901 GCCCAGTGACAGCATCTAGCCTTTGGCTGGTGTAGCCAATTACGTCCAACACCATTGGTGGCAGA
66 GCCCAGTAACAGCATCTAGCCCTTGGCTGGAGTAGCCAATTACATCCAACACCATTGATGACAGA
* * * *** * * *
15125966 TGTTGGCCTGTCATTGCCTTAGGATGTTGTGTCAAACACCTCCCCGGTGGGTGCTAACCCCTCGG
131 TGCTGGCCTATCATTGCCTTAGGATATTGCCCCAAACACCTCCCCAGTGGGTGCTAACCACTCGA
* * * ** * ** *
15126031 TGCTTGATGTTCCCTTGAGCTACTCTTGGGTGGGTGTCTTGCGCTTGATCCCTCGAACAACTCTT
196 CGCCTGATGTTCCCTCGAGCTACTCTTGGACGGGTGCCCAGCGCTTAATCCCTCGAACAACTCTT
15126096 TGCTTTTTGGTTGGTACAACCAATCGCATCCACCAC
261 TGCTTTTTGGTTGGTACAACCAATCGCATCCACCAC
*
15126132 CATCAATGGTAGAAGCTGGCCCATTGTTACCCCAGGATGTTACCTCAAACACCATCAAGATGCTG
1 CATCAATGGTAGAAGCTGGCCCATTGTTACCCCAGGATGTTACCTCAAACACCATCAAGATGCTA
* * * * * *
15126197 GCCTA-TCAACAGCATTTAGCCCTTGGTTGGAGTGGCCAATTGCATCCAACACCATTGATGATAG
66 GCCCAGT-AACAGCATCTAGCCCTTGGCTGGAGTAGCCAATTACATCCAACACCATTGATGACAG
** * * * **
15126261 ATGCTGGCCTATTGTTGCCTT-GAGATATTGCCCCAAACACTTCCCTAGTGGGTGTTGGCCACTC
130 ATGCTGGCCTATCATTGCCTTAG-GATATTGCCCCAAACACCTCCCCAGTGGGTGCTAACCACTC
* * * * *
15126325 GACGCCTGATGTTGCCTCGAGCTCCTCCTT-GACGGGTGCCCAGTGCTTAATCCCTTGAACACCT
194 GACGCCTGATGTTCCCTCGAGCTACT-CTTGGACGGGTGCCCAGCGCTTAATCCCTCGAACAACT
15126389 CTTTG
258 CTTTG
15126394 GTCTTTTACT
Statistics
Matches: 209, Mismatches: 50, Indels: 6
0.79 0.19 0.02
Matches are distributed among these distances:
295 2 0.01
296 204 0.98
297 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.23, T:0.28
Consensus pattern (296 bp):
CATCAATGGTAGAAGCTGGCCCATTGTTACCCCAGGATGTTACCTCAAACACCATCAAGATGCTA
GCCCAGTAACAGCATCTAGCCCTTGGCTGGAGTAGCCAATTACATCCAACACCATTGATGACAGA
TGCTGGCCTATCATTGCCTTAGGATATTGCCCCAAACACCTCCCCAGTGGGTGCTAACCACTCGA
CGCCTGATGTTCCCTCGAGCTACTCTTGGACGGGTGCCCAGCGCTTAATCCCTCGAACAACTCTT
TGCTTTTTGGTTGGTACAACCAATCGCATCCACCAC
Found at i:15126417 original size:296 final size:295
Alignment explanation
Indices: 15125783--15126417 Score: 614
Period size: 296 Copynumber: 2.1 Consensus size: 295
15125773 TTTGTGTTTG
* * * ** * *
15125783 ATCCCTTGAACACCTTTTTGGTCCTTGACTGATGCAG-CAATCGTGTCCATCAACATCAGTGGTA
1 ATCCCTTGAACACCTCTTTGGTCTTTTACTG-TGCAGCCAATCGCATCCACCAACATCAATGGTA
* * * * * * *
15125847 GATGCTGGCCCATTGTTACCCTAGGATGTTGCCTCAAACACCCTTAGGATGCTAGCCCAGTGACA
65 GAAGCTGGCCCATTGTTACCCCAGGATGTTACCTCAAACACCATCAAGATGCTAGCCCAGTAACA
* * * * * * *
15125912 GCATCTAGCCTTTGGCTGGTGTAGCCAATTACGTCCAACACCATTGGTGGCAGATGTTGGCCTGT
130 GCATCTAGCCCTTGGCTGGAGTAGCCAATTACATCCAACACCATTGATGACAGATGCTGGCCTAT
* *** * * ** *
15125977 CATTGCCTTAGGATGTTGTGTCAAACACCTCCCCGGTGGGTGCTAACCCCTCGGTGCTTGATGTT
195 CATTGCCTTAGGATATTGCCCCAAACACCTCCCCAGTGGGTGCTAACCACTCGACGCCTGATGTT
* ** * ** *
15126042 CCCTTGAGCTACTCTTGGGTGGGTGTCTTGCGCTTG
260 CCCTCGAGCTACTCTTGGACGGGTGCCCAGCGCTTA
* * * ** * * *
15126078 ATCCCTCGAACAACTCTTTGCT-TTTTGGTTGGTACAACCAATCGCATCCACCACCATCAATGGT
1 ATCCCTTGAACACCTCTTTGGTCTTTT-ACT-GTGCAGCCAATCGCATCCACCAACATCAATGGT
* *
15126142 AGAAGCTGGCCCATTGTTACCCCAGGATGTTACCTCAAACACCATCAAGATGCTGGCCTA-TCAA
64 AGAAGCTGGCCCATTGTTACCCCAGGATGTTACCTCAAACACCATCAAGATGCTAGCCCAGT-AA
* * * * *
15126206 CAGCATTTAGCCCTTGGTTGGAGTGGCCAATTGCATCCAACACCATTGATGATAGATGCTGGCCT
128 CAGCATCTAGCCCTTGGCTGGAGTAGCCAATTACATCCAACACCATTGATGACAGATGCTGGCCT
** * * * **
15126271 ATTGTTGCCTT-GAGATATTGCCCCAAACACTTCCCTAGTGGGTGTTGGCCACTCGACGCCTGAT
193 ATCATTGCCTTAG-GATATTGCCCCAAACACCTCCCCAGTGGGTGCTAACCACTCGACGCCTGAT
* * *
15126335 GTTGCCTCGAGCTCCTCCTT-GACGGGTGCCCAGTGCTTA
257 GTTCCCTCGAGCTACT-CTTGGACGGGTGCCCAGCGCTTA
15126374 ATCCCTTGAACACCTCTTTGGTCTTTTACTAGTGCAGCCAATCG
1 ATCCCTTGAACACCTCTTTGGTCTTTTACT-GTGCAGCCAATCG
15126418 TGTCTTCCAC
Statistics
Matches: 263, Mismatches: 70, Indels: 13
0.76 0.20 0.04
Matches are distributed among these distances:
294 2 0.01
295 24 0.09
296 230 0.87
297 7 0.03
ACGTcount: A:0.20, C:0.28, G:0.23, T:0.29
Consensus pattern (295 bp):
ATCCCTTGAACACCTCTTTGGTCTTTTACTGTGCAGCCAATCGCATCCACCAACATCAATGGTAG
AAGCTGGCCCATTGTTACCCCAGGATGTTACCTCAAACACCATCAAGATGCTAGCCCAGTAACAG
CATCTAGCCCTTGGCTGGAGTAGCCAATTACATCCAACACCATTGATGACAGATGCTGGCCTATC
ATTGCCTTAGGATATTGCCCCAAACACCTCCCCAGTGGGTGCTAACCACTCGACGCCTGATGTTC
CCTCGAGCTACTCTTGGACGGGTGCCCAGCGCTTA
Found at i:15132138 original size:22 final size:22
Alignment explanation
Indices: 15132113--15132186 Score: 94
Period size: 22 Copynumber: 3.4 Consensus size: 22
15132103 CTCAGTCTCA
*
15132113 ACACATACCTCGACCACCATCG
1 ACACATGCCTCGACCACCATCG
* *
15132135 ACACATGCCTTGAACACCATCG
1 ACACATGCCTCGACCACCATCG
**
15132157 GTACATGCCTCGACCACCATCG
1 ACACATGCCTCGACCACCATCG
*
15132179 ATACATGC
1 ACACATGC
15132187 TGGCCTTTTA
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 44 1.00
ACGTcount: A:0.30, C:0.39, G:0.14, T:0.18
Consensus pattern (22 bp):
ACACATGCCTCGACCACCATCG
Found at i:15134489 original size:117 final size:117
Alignment explanation
Indices: 15134269--15134491 Score: 270
Period size: 117 Copynumber: 1.9 Consensus size: 117
15134259 CTACTGTAAC
* * * * *
15134269 CAATCGTATCCACCACCATTAGTGGCAGATGCTGGCCCATTGTTGTCGTAGGATGTTGTCTTAAA
1 CAATCGCATCCAACACCATCAGTGGCAGATGCTGGCCCATTGTTGCCGTAGGATGTTGTCTCAAA
* *
15134334 CACCTATGGGATGCTGGCCCATCGATAGTGTCTAGCCCTTAGTTGGTGCGAT
66 CACCTATGGGATGCTAGCCCATCGATAGTATCTAGCCCTTAGTTGGTGCGAT
* * * * **
15134386 CAATCGCATCCAACATCATCAGTGGGAGATGCTGGCCCATTGTTGCCTTGGGATGTTGTCTCAGT
1 CAATCGCATCCAACACCATCAGTGGCAGATGCTGGCCCATTGTTGCCGTAGGATGTTGTCTCAAA
* * *
15134451 CACCT-TCGGGATGCTAGCCTATTGATA-TCATCTGGCCCTTA
66 CACCTAT-GGGATGCTAGCCCATCGATAGT-ATCTAGCCCTTA
15134492 ACTGGTGTGG
Statistics
Matches: 88, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
116 2 0.02
117 86 0.98
ACGTcount: A:0.20, C:0.25, G:0.25, T:0.30
Consensus pattern (117 bp):
CAATCGCATCCAACACCATCAGTGGCAGATGCTGGCCCATTGTTGCCGTAGGATGTTGTCTCAAA
CACCTATGGGATGCTAGCCCATCGATAGTATCTAGCCCTTAGTTGGTGCGAT
Found at i:15134944 original size:24 final size:24
Alignment explanation
Indices: 15134912--15134965 Score: 99
Period size: 24 Copynumber: 2.2 Consensus size: 24
15134902 ATGTGCACCG
15134912 TGGCCTAAAATCAAACTTTGACCA
1 TGGCCTAAAATCAAACTTTGACCA
*
15134936 TGGCCTAAAATCAAGCTTTGACCA
1 TGGCCTAAAATCAAACTTTGACCA
15134960 TGGCCT
1 TGGCCT
15134966 GGACCACCAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (24 bp):
TGGCCTAAAATCAAACTTTGACCA
Found at i:15136461 original size:296 final size:293
Alignment explanation
Indices: 15135940--15136488 Score: 663
Period size: 296 Copynumber: 1.9 Consensus size: 293
15135930 ATGGCGACAG
* * * **
15135940 ATGCTAGCCCATTGTTGCCTCAAGATGTTGCATCAGACACCTCTCTAGTGGGTGTTGGCCCTTGG
1 ATGCTAGCCCATTGTTACCTCAAGATGTTGCATCAGACACCTCTCTAGCGAGTGTTGGCCCTTAA
* * * *
15136005 TACTTGATGTTGCCTCGAGCTCCTCCTTGGTAGGTGCTGGTGCTTGATTCCCCAAGCACCTTTTT
66 TACTTGATATTGCCTCGAGCTCCTCCTTGGTAGGTGCTGGTGCTTGATCCCCCAAACACCATTTT
* * * * *
15136070 GGTCTTTGATGGGTGCAGCCAATCACGTACACCACTATCAGTGGCAGATGCTAGCCTATTGTTGC
131 GGTCATGGATGGGTG-AGCCAATCACATACACCACAATCAGTGGCAGATGCTAGCCCATTGTTGC
* * * *
15136135 CTCGAGATGTTGCCTCAAACACCTTCAGGATGCTAGCCCATCAACAGCATCTGGCCCTAGGTTAG
195 CCCAAGATGTTACCTCAAACACCATCAGGATGCTAGCCCATCAACAGCATCTGGCCCTAGGTTAG
15136200 TGCGGCCAATCGCATCTAACACCATTAGCAACAA
260 TGCGGCCAATCGCATCTAACACCATTAGCAACAA
** * * * *
15136234 ATGCTAGCCTGTTGTTACCTTAGGATGTTGCCTTAGACACCTC-CTTAGCGAGTGTTGGCCCTTC
1 ATGCTAGCCCATTGTTACCTCAAGATGTTGCATCAGACACCTCTC-TAGCGAGTGTTGGCCCTT-
* *
15136298 AATGCTTGATATTGCCTCGAGCTCCTCCTTGGTGGGTGCTTGGTGCTTGATCCCCCAAACACCAT
64 AATACTTGATATTGCCTCGAGCTCCTCCTTGGTAGGTGC-TGGTGCTTGATCCCCCAAACACCAT
* * * ** *
15136363 TTTGGTCCATGGCTGGTGTG-GCCAATCGCATCCACCA-AAGTTGGTGGTAGATGCTAGCCCATT
128 TTTGGT-CATGGATGG-GTGAGCCAATCACATACACCACAA-TCAGTGGCAGATGCTAGCCCATT
** * * * * *
15136426 GTTGCCCCAAGATGTTACCTCGGACACCATCAGGATGCTGGCCCGTTAATAGCATTTGGCCCT
190 GTTGCCCCAAGATGTTACCTCAAACACCATCAGGATGCTAGCCCATCAACAGCATCTGGCCCT
15136489 CAACTGGTGT
Statistics
Matches: 210, Mismatches: 39, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
293 1 0.00
294 52 0.25
295 35 0.17
296 113 0.54
297 6 0.03
298 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.24, T:0.29
Consensus pattern (293 bp):
ATGCTAGCCCATTGTTACCTCAAGATGTTGCATCAGACACCTCTCTAGCGAGTGTTGGCCCTTAA
TACTTGATATTGCCTCGAGCTCCTCCTTGGTAGGTGCTGGTGCTTGATCCCCCAAACACCATTTT
GGTCATGGATGGGTGAGCCAATCACATACACCACAATCAGTGGCAGATGCTAGCCCATTGTTGCC
CCAAGATGTTACCTCAAACACCATCAGGATGCTAGCCCATCAACAGCATCTGGCCCTAGGTTAGT
GCGGCCAATCGCATCTAACACCATTAGCAACAA
Found at i:15136516 original size:296 final size:293
Alignment explanation
Indices: 15135910--15136520 Score: 654
Period size: 296 Copynumber: 2.1 Consensus size: 293
15135900 GGCTAGTGTA
* * * * * *
15135910 GCCAATCATGTCTAACAGCAATGGCGACAGATGCTAGCCCATTGTTGCCTCAAGATGTTGCATCA
1 GCCAATCATGTCTAACACCATTAGCAACAAATGCTAGCCCATTGTTACCTCAAGATGTTGCATCA
* * ** *
15135975 GACACCTCTCTAGTGGGTGTTGGCCCTTGGTACTTGATGTTGCCTCGAGCTCCTCCTTGGTAGGT
66 GACACCTCTCTAGCGAGTGTTGGCCCTTAATACTTGATATTGCCTCGAGCTCCTCCTTGGTAGGT
* * * * * *
15136040 GCTGGTGCTTGATTCCCCAAGCACCTTTTTGGTCTTTGATGGGTGCAGCCAATCACGTACACCAC
131 GCTGGTGCTTGATCCCCCAAACACCATTTTGGTCATGGATGGGTG-AGCCAATCACATACACCAC
* * * * * *
15136105 TATCAGTGGCAGATGCTAGCCTATTGTTGCCTCGAGATGTTGCCTCAAACACCTTCAGGATGCTA
195 AATCAGTGGCAGATGCTAGCCCATTGTTGCCCCAAGATGTTACCTCAAACACCATCAGGATGCTA
**
15136170 GCCCATCAACAGCATCTGGCCCTAGGTTAGTGCG
260 GCCCATCAACAGCATCTGGCCCTAGACTAGTGCG
*** ** * * * *
15136204 GCCAATCGCATCTAACACCATTAGCAACAAATGCTAGCCTGTTGTTACCTTAGGATGTTGCCTTA
1 GCCAATCATGTCTAACACCATTAGCAACAAATGCTAGCCCATTGTTACCTCAAGATGTTGCATCA
* *
15136269 GACACCTC-CTTAGCGAGTGTTGGCCCTTCAATGCTTGATATTGCCTCGAGCTCCTCCTTGGTGG
66 GACACCTCTC-TAGCGAGTGTTGGCCCTT-AATACTTGATATTGCCTCGAGCTCCTCCTTGGTAG
* * *
15136333 GTGCTTGGTGCTTGATCCCCCAAACACCATTTTGGTCCATGGCTGGTGTG-GCCAATCGCATCCA
129 GTGC-TGGTGCTTGATCCCCCAAACACCATTTTGGT-CATGGATGG-GTGAGCCAATCACATACA
** * **
15136397 CCA-AAGTTGGTGGTAGATGCTAGCCCATTGTTGCCCCAAGATGTTACCTCGGACACCATCAGGA
191 CCACAA-TCAGTGGCAGATGCTAGCCCATTGTTGCCCCAAGATGTTACCTCAAACACCATCAGGA
* * * * * * *
15136461 TGCTGGCCCGTTAATAGCATTTGGCCCTCA-ACTGGTGTG
255 TGCTAGCCCATCAACAGCATCTGGCCCT-AGACTAGTGCG
*
15136500 GCTAATCATGTCTAACACCAT
1 GCCAATCATGTCTAACACCAT
15136521 CGACTGCAGT
Statistics
Matches: 255, Mismatches: 55, Indels: 12
0.79 0.17 0.04
Matches are distributed among these distances:
293 1 0.00
294 74 0.29
295 35 0.14
296 135 0.53
297 7 0.03
298 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.24, T:0.28
Consensus pattern (293 bp):
GCCAATCATGTCTAACACCATTAGCAACAAATGCTAGCCCATTGTTACCTCAAGATGTTGCATCA
GACACCTCTCTAGCGAGTGTTGGCCCTTAATACTTGATATTGCCTCGAGCTCCTCCTTGGTAGGT
GCTGGTGCTTGATCCCCCAAACACCATTTTGGTCATGGATGGGTGAGCCAATCACATACACCACA
ATCAGTGGCAGATGCTAGCCCATTGTTGCCCCAAGATGTTACCTCAAACACCATCAGGATGCTAG
CCCATCAACAGCATCTGGCCCTAGACTAGTGCG
Found at i:15138863 original size:22 final size:22
Alignment explanation
Indices: 15138837--15138886 Score: 82
Period size: 22 Copynumber: 2.3 Consensus size: 22
15138827 CCTTGGTCTT
*
15138837 GACACATGCCTCGACCACCATC
1 GACACATGCCTCAACCACCATC
*
15138859 GACACATGCCTCAACCACCATT
1 GACACATGCCTCAACCACCATC
15138881 GACACA
1 GACACA
15138887 CACTGGCCTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.32, C:0.42, G:0.12, T:0.14
Consensus pattern (22 bp):
GACACATGCCTCAACCACCATC
Found at i:15147218 original size:296 final size:298
Alignment explanation
Indices: 15146579--15147840 Score: 804
Period size: 296 Copynumber: 4.3 Consensus size: 298
15146569 AGCCCTTTAC
* * *
15146579 TGCC-CGATGTTGCC-CTGAGCTCCTCCTTGGTAGGTGCTTGGTGCTTGATCCCCCGAACACCTC
1 TGCCTCGATGTTGCCTC-GAGCTCTTCCTTGGTAGGTGCTTAGTGCTTGATCCCTCGAACACCTC
* * ** ** * * *
15146642 TTTGGTCCTTGGTTAGTGTAGCCTATCACATCCACTTCCATTGACGGTAGATGCTGGCCTATT-A
65 TTTGGTCCTTGGCTAGTGTAGCCAATCATGTCCACCACCATTGATGGTAGATGCTAGCCTATTGT
* * * * * **
15146706 TTGCTACAAGATGTTACCTCGAACACCATCAGGATGTTGGCCCGTCGACAGTGTCTAGCCCTTGG
130 TTGCTACAAGATATTACATCGAACACCATCAAGATCTTGGCCCATCGACAGCATCTAGCCCTTGG
* * * * *
15146771 CTAGTGCGACCAATCACTTTCAACACCATCGGTGGTAGATGCTAGCCCATTGTTGCCCGAAGATG
195 CTAGTGCGACCAATCACTCTCAACACCATCGGTGGCAGATGCTAGCCAATTGTTACCAGAAGATG
* * * *
15146836 TTGCCTCAGATAACTTCTTGGCAGGTGCTAGCCCCTCCG
260 TTGCCTCAGACAACTCCCTGGCAGGTACTAGCCCCTCCG
** * * * * * *
15146875 TG-CT-GAATGTTATCTTGAGCTCCTT-CTTGGTGGGTACCTATTGCTTGATCCCTCGAACACTT
1 TGCCTCG-ATGTTGCCTCGAGCT-CTTCCTTGGTAGGTGCTTAGTGCTTGATCCCTCGAACACCT
* * *
15146937 CTTTGGTCCTTAGCTAGTGCAGCCAATCGTGTCCACCACCATTGATGGTAGATGCTAGCCTATTG
64 CTTTGGTCCTTGGCTAGTGTAGCCAATCATGTCCACCACCATTGATGGTAGATGCTAGCCTATTG
* * *
15147002 TTTGCT-CATGATATTGCATCGAACACCATCAAGATCTTGG-CCATCGATAGCATCTAGCCCTTG
129 TTTGCTACAAGATATTACATCGAACACCATCAAGATCTTGGCCCATCGACAGCATCTAGCCCTTG
* * * * *
15147065 GCTGGTGGGGCCAATCACATCT-AACACCATCGGTGGCAGATGCTGGCCAATTGTTACCTAGGA-
194 GCTAGTGCGACCAATCAC-TCTCAACACCATCGGTGGCAGATGCTAGCCAATTGTTACC-AGAAG
** * **
15147128 ATGTTGCCTTGGACACCTCCCTGGTGGGTACTAGCCCCT-CG
257 ATGTTGCCTCAGACAACTCCCTGGCAGGTACTAGCCCCTCCG
* * * *
15147169 ATGCCTCGATATTGCCTCGAGCTCTTCCTTGGCAGGTGCTTAGTGCTTGATACCTTGAACACCTC
1 -TGCCTCGATGTTGCCTCGAGCTCTTCCTTGGTAGGTGCTTAGTGCTTGATCCCTCGAACACCTC
* * * *
15147234 TTTCGTCCTTGGCT-G-GTATGACCAATCATGTCCACCACCATTGATAGTAGATGTTAGCCCATT
65 TTTGGTCCTTGGCTAGTGTA-G-CCAATCATGTCCACCACCATTGATGGTAGATGCTAGCCTATT
** ** * * * ** * * * *
15147297 GTTACCT-TGAGATGTTGGC-TC-AGATACCAT-TGGAATGC-TAGCCTATCGACAACATCTGGC
128 GTTTGCTACAAGATATT-ACATCGA-ACACCATCAAG-AT-CTTGGCCCATCGACAGCATCTAGC
* * * * * * *
15147357 CTTTGGCTAGTGCAACTAATCA-TGCCCAACACCATCGGTGGTAAATGCTAGCCTATTGTTACCC
189 CCTTGGCTAGTGCGACCAATCACT-CTCAACACCATCGGTGGCAGATGCTAGCCAATTGTTA-CC
* * * * * **
15147421 TG-AGATGTTACCTCAGGC-ACTTCCCTGACAGGTACTAGCCTCTTGG
252 AGAAGATGTTGCCTCAGACAAC-TCCCTGGCAGGTACTAGCCCCTCCG
* * * * * * * * **
15147467 TGCC-CGATGTTGCCTGGAGCACCTCTTTGGTGGGTGCTTGGTACTTAATCCCTTAAACACCTCT
1 TGCCTCGATGTTGCCTCGAGCTCTTCCTTGGTAGGTGCTTAGTGCTTGATCCCTCGAACACCTCT
* ** ** * * * *
15147531 TTGGTCCTTGGCTGGTGT-GACCAATCACATCCACTTCAATCGATGGCAGATGCTAGCCTAATGT
66 TTGGTCCTTGGCTAGTGTAG-CCAATCATGTCCACCACCATTGATGGTAGATGCTAGCCTATTGT
* * * * * * *
15147595 TT-C-ACTAGGATGTTGACTTAG-ACACCATCAAGATAC-TGGCCCATCGATAACATCTAGCACT
130 TTGCTAC-AAGATATT-ACATCGAACACCATCAAGAT-CTTGGCCCATCGACAGCATCTAGCCCT
* * * * * * * * * * ** *
15147656 TGGTTGGTGGGGCCATTC-GTGTCTAACACCATTGGTGGCAAATGCTTGCTTATTGTTGCCATG-
192 TGGCTAGTGCGACCAATCACTCTC-AACACCATCGGTGGCAGATGCTAGCCAATTGTTACCA-GA
* * * * * * ** *
15147719 GGATGTTACGTCGGACACCTCCCAGGTGGGTACTAGCCCCTCAG
255 AGATGTTGCCTCAGACAACTCCCTGGCAGGTACTAGCCCCTCCG
* * * * * * * *
15147763 TGCC-CTAATGTTACCTCGAGTTCCTCCTTGGTGGGTGCCTAGAGCTTGATCCCCCGAACACCAT
1 TGCCTC-GATGTTGCCTCGAGCTCTTCCTTGGTAGGTGCTTAGTGCTTGATCCCTCGAACACC-T
*
15147827 -TTTGGTCTTTGGCT
64 CTTTGGTCCTTGGCT
15147841 GGTGCAACCA
Statistics
Matches: 740, Mismatches: 189, Indels: 73
0.74 0.19 0.07
Matches are distributed among these distances:
294 4 0.01
295 112 0.15
296 455 0.61
297 163 0.22
298 6 0.01
ACGTcount: A:0.20, C:0.27, G:0.23, T:0.30
Consensus pattern (298 bp):
TGCCTCGATGTTGCCTCGAGCTCTTCCTTGGTAGGTGCTTAGTGCTTGATCCCTCGAACACCTCT
TTGGTCCTTGGCTAGTGTAGCCAATCATGTCCACCACCATTGATGGTAGATGCTAGCCTATTGTT
TGCTACAAGATATTACATCGAACACCATCAAGATCTTGGCCCATCGACAGCATCTAGCCCTTGGC
TAGTGCGACCAATCACTCTCAACACCATCGGTGGCAGATGCTAGCCAATTGTTACCAGAAGATGT
TGCCTCAGACAACTCCCTGGCAGGTACTAGCCCCTCCG
Found at i:15155434 original size:296 final size:296
Alignment explanation
Indices: 15154773--15155451 Score: 644
Period size: 296 Copynumber: 2.3 Consensus size: 296
15154763 AATCAATGGT
* * * * * *
15154773 AGATGCTGGCCCATTGTTGACCTAGGATGTTGCCTAAGACACCATCGAGATGCTGGCTCATCGAC
1 AGATGTTGGCCCATTGTTGCCCTAGGATGTTACCTAAGACACCATAGGGATGCTGGCTCATCGAT
* **
15154838 A--ATGTTTGTCCCTTGGCTGGTGTGACCAATCATGTCCAACACCATCGATGACAAATGCTGGCC
66 AGCAT-CTT-AACCTTGGCTGGTGTGACCAATCATGTCCAACACCATCGATGACAAATGCTGGCC
* * *
15154901 CATTGTTGCCCTGGAATGTTGCCTCGTACACCTCCATAGCAGGTGCTAGCCCCTCATCGCCCGAT
129 CATTGTTGCCCTGGAATGTTGCCTAGTACACCTCCATAGCAAGTGCTAGCCCCTCATCGCCCAAT
* * * * *
15154966 GTTGCCTTAAGCTCCTCCATGGTAGGTGCCTAGTGCTTGATACCCTAAACACCTCTTTGGTTCTT
194 GTTGCCTCAAGCTCCTCCATGGTAGATGCCTAGCGCTTGATACCCCAAACACCACTTTGGTTCTT
* * * * *
15155031 GGCTGGTAAGGCCAATCGCATCCACCACCATTAGTGGT
259 GGCTAGTAAGGCCAATCACATCCACCACCAATAGTAGC
* * * * * * * * * **
15155069 AGTTATTGGCCTATTATTGCCCCAAGATGTTACCTCATG-CACTATCA-GGATGCTAGCTTGTCG
1 AGATGTTGGCCCATTGTTGCCCTAGGATGTTACCT-AAGACACCAT-AGGGATGCTGGCTCATCG
* * * * * *
15155132 ATAGCATCTTAACCTTGGCTGGTGTGACCAATCATTTCTAATACCATCGATGGCATATGTTGGCC
64 ATAGCATCTTAACCTTGGCTGGTGTGACCAATCATGTCCAACACCATCGATGACAAATGCTGGCC
* ** *
15155197 CATTGTTGCCCT-GAGATGTTGCCTTAG-AGACCTCTTTGGCAAGTGCTAGCCCCTCAGT-GCCC
129 CATTGTTGCCCTGGA-ATGTTGCC-TAGTACACCTCCATAGCAAGTGCTAGCCCCTCA-TCGCCC
* * * * * * *
15155259 AATGTTTCCTCGAGCTTCTCCTTGGT-GCATGCTTGGCGCTTGAT-CCACCGAACACCACTTTGG
191 AATGTTGCCTCAAGCTCCTCCATGGTAG-ATGCCTAGCGCTTGATACC-CCAAACACCACTTT-G
** *
15155322 GCTT-TT-GCTAGTTTGGCCAATCACATCCACCACCAATGGTAGC
253 G-TTCTTGGCTAGTAAGGCCAATCACATCCACCACCAATAGTAGC
* * **
15155365 AGATGTTGGCCCATTGTTGCCCTAGGATGTTACCTTAGACACCATAGGGATGCTGGCCCATTAAT
1 AGATGTTGGCCCATTGTTGCCCTAGGATGTTACCTAAGACACCATAGGGATGCTGGCTCATCGAT
*
15155430 AGCATC-TAGCCTTTGGCTGGTG
66 AGCATCTTAACC-TTGGCTGGTG
15155452 GGGCCAATTG
Statistics
Matches: 300, Mismatches: 69, Indels: 28
0.76 0.17 0.07
Matches are distributed among these distances:
295 11 0.04
296 274 0.91
297 11 0.04
298 4 0.01
ACGTcount: A:0.20, C:0.28, G:0.23, T:0.29
Consensus pattern (296 bp):
AGATGTTGGCCCATTGTTGCCCTAGGATGTTACCTAAGACACCATAGGGATGCTGGCTCATCGAT
AGCATCTTAACCTTGGCTGGTGTGACCAATCATGTCCAACACCATCGATGACAAATGCTGGCCCA
TTGTTGCCCTGGAATGTTGCCTAGTACACCTCCATAGCAAGTGCTAGCCCCTCATCGCCCAATGT
TGCCTCAAGCTCCTCCATGGTAGATGCCTAGCGCTTGATACCCCAAACACCACTTTGGTTCTTGG
CTAGTAAGGCCAATCACATCCACCACCAATAGTAGC
Found at i:15165004 original size:295 final size:294
Alignment explanation
Indices: 15164443--15165058 Score: 649
Period size: 295 Copynumber: 2.1 Consensus size: 294
15164433 GTTGGCCCAC
* * *
15164443 CAATAGCATCTGGCCCTTGGCTGGAGTGACCAATCATGTCCAACACCTTCGACAGTAAATACTGG
1 CAATAGCATCTGGCCCTTGGCTAGTGTGACCAATCATGTCCAACACCATCGACAGTAAATACTGG
* *
15164508 CCCATTGTTGCACAAGGATGTTGCCTTGAACACCTCCCTAGTGAGTGCTAGCCCTTCGGTGCCGA
66 CCCATTGTTCCACAAGGATGTTGCCTTGAACACCTCCCTAGTGAGTGCTAGCCCCTCGGTGCCGA
* * * * * * *
15164573 TGTTGCCTTGAGCTCCTCCTTGGTGGGTGCCTAGTGCTTGATCCCTCGAAGATCTCTTTGGTCCT
131 TGTTGCCTTGAGCTCCTCCTTGGTAGGTGCCTAATGATTAATCCCCCGAACACCTCTTTGGTCCT
* * *** * * * *
15164638 TGACTGGTGTGACCAATCATGTCCACCACCATCGATGGTTGATGTCGGCCCGTTGTTGCCCCGAG
196 AGACTAGTGTGACCAATCA-GTCCACCACCATCGATGACAGATGTCGGCCCATTATTGCCCCAAA
* * *
15164703 ATGTTACCTCGA-ACACCATCAGGATGTTAGCCTGT
260 ATGTTACCT-GAGACACCATCAAGATGCTAGCCTAT
* * * ** * *
15164738 CAATAGCATCTGGCCCTTAGCTAGTGTGACTAATCGTGTCCAACACCATCGATGGTAGATGCTGG
1 CAATAGCATCTGGCCCTTGGCTAGTGTGACCAATCATGTCCAACACCATCGACAGTAAATACTGG
* ** *
15164803 CCCATTGTTCCCCTGGGATGTTGCCTTG-ACACCTTCCTGACG-G-GTGCTAGCCCCTCGGTGCC
66 CCCATTGTTCCACAAGGATGTTGCCTTGAACACCTCCCT-A-GTGAGTGCTAGCCCCTCGGTG-C
* * ** *
15164865 CGATGTT-TCTTTATGCTTTTCCTTGGTAGGTGCCTAATGATTAATCCCCCGAACACCTTTTTGG
128 CGATGTTGCCTTGA-GCTCCTCCTTGGTAGGTGCCTAATGATTAATCCCCCGAACACCTCTTTGG
* *
15164929 T-CTAAGGCTAGTGTGGCCAATTGCA-TCCACCACCATC-AGTGACAGATG-CTGGCCCATTATT
192 TCCT-AGACTAGTGTGACCAA-T-CAGTCCACCACCATCGA-TGACAGATGTC-GGCCCATTATT
* *
15164990 GCCCTAAAATGTTACCTTAGACACCATCAAGATGCTAGCCTAT
252 GCCCCAAAATGTTACCTGAGACACCATCAAGATGCTAGCCTAT
*
15165033 CGATAGCAT-TCGGCCCTTGGCTAGTG
1 CAATAGCATCT-GGCCCTTGGCTAGTG
15165059 CAGCCAGTAA
Statistics
Matches: 264, Mismatches: 46, Indels: 22
0.80 0.14 0.07
Matches are distributed among these distances:
294 35 0.13
295 225 0.85
296 2 0.01
297 2 0.01
ACGTcount: A:0.20, C:0.28, G:0.23, T:0.29
Consensus pattern (294 bp):
CAATAGCATCTGGCCCTTGGCTAGTGTGACCAATCATGTCCAACACCATCGACAGTAAATACTGG
CCCATTGTTCCACAAGGATGTTGCCTTGAACACCTCCCTAGTGAGTGCTAGCCCCTCGGTGCCGA
TGTTGCCTTGAGCTCCTCCTTGGTAGGTGCCTAATGATTAATCCCCCGAACACCTCTTTGGTCCT
AGACTAGTGTGACCAATCAGTCCACCACCATCGATGACAGATGTCGGCCCATTATTGCCCCAAAA
TGTTACCTGAGACACCATCAAGATGCTAGCCTAT
Found at i:15165077 original size:295 final size:295
Alignment explanation
Indices: 15164693--15165476 Score: 672
Period size: 295 Copynumber: 2.7 Consensus size: 295
15164683 CGGCCCGTTG
* * * * *
15164693 TTGCCCCGAGATGTTACCTCGAA-CACCATCAGGATGTTAGCCTGTCAATAGCA-TCTGGCCCTT
1 TTGCCCAGAAATGTTACCTC-AAGCACCATCAAGATGCTAGCCTATCAATAGCATTC-GGCCCTT
* * * * **** * *
15164756 AGCTAGTG-TGACTAATCGTGTCCAACACCATCGATGGTAGATGCTGGCCCATTGTTCCCCTGGG
64 GGCAAGTGCAG-CCAATAACATCCAACACCATCGATGGTAGATGCTAGCCCATTGTTACCCTGGG
* * * **
15164820 ATGTTGCCTTGACACCTTCCTGACGGGTGCTAGCCCCTCGGTGCCCGATGTTTCTTTATGCTTTT
128 ATGTTGCCTTGACACCTTCCTGACGGGTGCTAGCCCCTCGGTGCCCGATGTTGCCTTAAGCTCCT
* * * * * **
15164885 CCTTGGTAGGTGCCTAATGATTAATCCCCCGAACACCTTTTTGGTCTAAGGCTAGTGTGGCCAAT
193 CCGTGGCAGGTGCCTAACGATTAATCCCCCAAACACCTCTTTGGTCTAAGGCTAGTGCAGCCAAT
* * **
15164950 TGCATCCACCACCATCAGTGACAGATGCTGGCCCATTA
258 CGCATCCACCACCATCAATGACAGATGCTAACCCATTA
* *
15164988 TTGCCCTA-AAATGTTACCT-TAGACACCATCAAGATGCTAGCCTATCGATAGCATTCGGCCCTT
1 TTGCCC-AGAAATGTTACCTCAAG-CACCATCAAGATGCTAGCCTATCAATAGCATTCGGCCCTT
* * * * * * *
15165051 GGCTAGTGCAGCCAGTAACATCCAACACCA---ATGGCAACAGATGCCAGCTCATTGTTGCCTTG
64 GGCAAGTGCAGCCAATAACATCCAACACCATCGATGG---TAGATGCTAGCCCATTGTTACCCTG
* * ** *
15165113 GGATGTTGCCTCAGACACC-CCCT-A-GTAGGTGCTAGCCCCTCAATGCTCGATGTTGCCTTAAG
126 GGATGTTGCCT-TGACACCTTCCTGACG--GGTGCTAGCCCCTCGGTGCCCGATGTTGCCTTAAG
* * * * ** *
15165175 CTCCTCCGTGGCAGGTGCCTGACGCTTTATCCCCCAAACATCTCTTTGGTCTTTGGCTAGTGCAT
188 CTCCTCCGTGGCAGGTGCCTAACGATTAATCCCCCAAACACCTCTTTGGTCTAAGGCTAGTGCAG
* * ** * *
15165240 CCAATCGTATCCACCACTATCAATGGTAGATGCTAACCTATTG
253 CCAATCGCATCCACCACCATCAATGACAGATGCTAACCCATTA
* *** * * * *
15165283 TTGCCCAGAGATGTTACCTCAAGCACCATTGGGATGCTGGCTTGTCAATAGCGTTCGGCCCTTGG
1 TTGCCCAGAAATGTTACCTCAAGCACCATCAAGATGCTAGCCTATCAATAGCATTCGGCCCTTGG
** * * * *
15165348 CAAGTGTGGCCAATAACATCCAATACCATCGACGGTAGATGCTAGCCTACTGTTACCCTGGGATG
66 CAAGTGCAGCCAATAACATCCAACACCATCGATGGTAGATGCTAGCCCATTGTTACCCTGGGATG
* * * * * * *
15165413 TTGCCTTAGACACCTTCTTGGCAGGTGCTGGCCCTTCGGTGCCTGATGTTGCCTTGAGCTCCTC
131 TTGCCTT-GACACCTTCCTGACGGGTGCTAGCCCCTCGGTGCCCGATGTTGCCTTAAGCTCCTC
15165477 TCTGGAAGGT
Statistics
Matches: 379, Mismatches: 90, Indels: 39
0.75 0.18 0.08
Matches are distributed among these distances:
292 4 0.01
293 2 0.01
294 2 0.01
295 321 0.85
296 47 0.12
298 3 0.01
ACGTcount: A:0.21, C:0.29, G:0.22, T:0.28
Consensus pattern (295 bp):
TTGCCCAGAAATGTTACCTCAAGCACCATCAAGATGCTAGCCTATCAATAGCATTCGGCCCTTGG
CAAGTGCAGCCAATAACATCCAACACCATCGATGGTAGATGCTAGCCCATTGTTACCCTGGGATG
TTGCCTTGACACCTTCCTGACGGGTGCTAGCCCCTCGGTGCCCGATGTTGCCTTAAGCTCCTCCG
TGGCAGGTGCCTAACGATTAATCCCCCAAACACCTCTTTGGTCTAAGGCTAGTGCAGCCAATCGC
ATCCACCACCATCAATGACAGATGCTAACCCATTA
Found at i:15171529 original size:295 final size:297
Alignment explanation
Indices: 15171228--15171785 Score: 659
Period size: 295 Copynumber: 1.9 Consensus size: 297
15171218 TAGGATACTG
* * * * * *
15171228 GCCCATCAA-TCGTATCTGGCCCTTGGTGGGTGTGGCCAATTGTGTCCAACACCATCGATGATAG
1 GCCCATCAACT-GCATCTGACCCTTGGTGGGAGTGACCAATTATGTCCAACACCATCGATGAAAG
* *
15171292 ATGCTAG-CTCGTTGTTGCCCCAAGACAT-TT-CCTCAGACACCTCCTTAGTGGGTACTAGCCCC
65 ATACTAGCCT-GTTGTTG--CCAAGACATGTTGCCTCAGACACCTCCTTAGTGGATACTAGCCCC
* * * ** *
15171354 TTAG-GGCCCGATGTTGCCTCAAGCTCCT-TTTTTATGGGTGCTTGGTGCTTGA-CTCCTC--AC
127 TTAGTGCCCCAATGTTGCCTCAAGCTCCTCCTTGGAT-GATGCTTGGTGCTTGATC-CCTCGAAC
** *
15171414 ACACCTCT-TGGTCCTTAGCTGGTGTGACCAATCGTGTCCACCACCATCAATAGTAGATGTTGGC
190 AC-CCT-TATGGTCCTTAGCTGGTGTGACCAATCGCATCCACCACCATCAATAGTAGATGCTGGC
**
15171478 CCGTTGTTGCCCCATGAAGTTTTTACGACCATTATTGGGATGCTA
253 CCACTGTTGCCCCATGAAGTTTTTACGACCATTATTGGGATGCTA
* * *
15171523 GCCCATCAACTGCATCTTACCCTTGGTTGGAGTGACCAATTATGTCTAACACCATCGATGAAAGA
1 GCCCATCAACTGCATCTGACCCTTGGTGGGAGTGACCAATTATGTCCAACACCATCGATGAAAGA
* ** ** * * * *
15171588 TACTAGCCTGTTGTTGCCATGGGATGTTGCCTTGGACACCTCGTTGGTGGATGCTGGCCCCTTAG
66 TACTAGCCTGTTGTTGCCAAGACATGTTGCCTCAGACACCTCCTTAGTGGATACTAGCCCCTTAG
* *
15171653 TGCCCCAATGTTGCGTCGAGCTCCTCCTTGGATGATGCTTGGTGCTTGATCCCTCGAACACCCTT
131 TGCCCCAATGTTGCCTCAAGCTCCTCCTTGGATGATGCTTGGTGCTTGATCCCTCGAACACCCTT
* *
15171718 ATGGTCCTTAGCTGGTGTGACCAATTGCATCCACCACCATCAATGGTAGATGCTGGCCCACTGTT
196 ATGGTCCTTAGCTGGTGTGACCAATCGCATCCACCACCATCAATAGTAGATGCTGGCCCACTGTT
15171783 GCC
261 GCC
15171786 TTAGGATGTT
Statistics
Matches: 218, Mismatches: 35, Indels: 18
0.80 0.13 0.07
Matches are distributed among these distances:
293 6 0.03
294 2 0.01
295 95 0.44
296 43 0.20
297 68 0.31
298 4 0.02
ACGTcount: A:0.19, C:0.28, G:0.23, T:0.30
Consensus pattern (297 bp):
GCCCATCAACTGCATCTGACCCTTGGTGGGAGTGACCAATTATGTCCAACACCATCGATGAAAGA
TACTAGCCTGTTGTTGCCAAGACATGTTGCCTCAGACACCTCCTTAGTGGATACTAGCCCCTTAG
TGCCCCAATGTTGCCTCAAGCTCCTCCTTGGATGATGCTTGGTGCTTGATCCCTCGAACACCCTT
ATGGTCCTTAGCTGGTGTGACCAATCGCATCCACCACCATCAATAGTAGATGCTGGCCCACTGTT
GCCCCATGAAGTTTTTACGACCATTATTGGGATGCTA
Found at i:15177221 original size:26 final size:26
Alignment explanation
Indices: 15177192--15177247 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
15177182 AATAACCATT
* *
15177192 GGCACATGCATGCCTCAATCCATATC
1 GGCACATACATGCCTCAATCCACATC
* *
15177218 GGCATATACATGCCTCGATCCACATC
1 GGCACATACATGCCTCAATCCACATC
15177244 GGCA
1 GGCA
15177248 TAATCTAGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.34, G:0.18, T:0.21
Consensus pattern (26 bp):
GGCACATACATGCCTCAATCCACATC
Found at i:15177248 original size:26 final size:26
Alignment explanation
Indices: 15177200--15177249 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
15177190 TTGGCACATG
*
15177200 CATGCCTCAATCCATATCGGCATATA
1 CATGCCTCAATCCACATCGGCATATA
*
15177226 CATGCCTCGATCCACATCGGCATA
1 CATGCCTCAATCCACATCGGCATA
15177250 ATCTAGAATC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.34, G:0.14, T:0.24
Consensus pattern (26 bp):
CATGCCTCAATCCACATCGGCATATA
Found at i:15182542 original size:45 final size:45
Alignment explanation
Indices: 15182456--15182544 Score: 106
Period size: 45 Copynumber: 2.0 Consensus size: 45
15182446 ACTTTGGCCA
* * * *
15182456 ATGCCTTGACCATCAATAGCAAATGTTGACGTATGGTATGGGCAT
1 ATGCATTGACCATCAATAGCAAATGCTGACCTATGGCATGGGCAT
* * * *
15182501 ATGCATTGACCATCATTAGCATATGCTGGCCTTTGGCATGGGCA
1 ATGCATTGACCATCAATAGCAAATGCTGACCTATGGCATGGGCA
15182545 ATTACCTTGA
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
45 36 1.00
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (45 bp):
ATGCATTGACCATCAATAGCAAATGCTGACCTATGGCATGGGCAT
Found at i:15183233 original size:22 final size:22
Alignment explanation
Indices: 15183207--15183257 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
15183197 TTGGTCTCGG
15183207 CACATGCCTCGACCACCATCGA
1 CACATGCCTCGACCACCATCGA
* * * *
15183229 CACATACCTTGACCACCATTGG
1 CACATGCCTCGACCACCATCGA
15183251 CACATGC
1 CACATGC
15183258 TGGCCCTTTA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.27, C:0.41, G:0.14, T:0.18
Consensus pattern (22 bp):
CACATGCCTCGACCACCATCGA
Found at i:15194963 original size:47 final size:47
Alignment explanation
Indices: 15194887--15194996 Score: 159
Period size: 47 Copynumber: 2.3 Consensus size: 47
15194877 CATCAGCTAC
*
15194887 AGATGCTGGCCTATTGTTATCCCAGGATGTTGCCTTAGACACCATCA
1 AGATGCTGGCCTATTGTTATCCCAGGATGTTGCCTCAGACACCATCA
* * * *
15194934 AGATGCTGGCCCATTGTTGTCCC-GAGATGTTGGCTCAGACACCATTA
1 AGATGCTGGCCTATTGTTATCCCAG-GATGTTGCCTCAGACACCATCA
15194981 AGATGCTGGCCTATTG
1 AGATGCTGGCCTATTG
15194997 ATAGCATCTG
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
46 1 0.02
47 55 0.98
ACGTcount: A:0.22, C:0.25, G:0.25, T:0.29
Consensus pattern (47 bp):
AGATGCTGGCCTATTGTTATCCCAGGATGTTGCCTCAGACACCATCA
Found at i:15212211 original size:297 final size:295
Alignment explanation
Indices: 15211588--15212378 Score: 696
Period size: 297 Copynumber: 2.7 Consensus size: 295
15211578 GGCCCCTTAA
* * * * * * * * *
15211588 TGCCCGATGTTGCCTCGAGCT-CATCCTTCGCAGGTGCTTGGCA-CTTGATCTCCTAAACACCTT
1 TGCCTGATGTTGCCTCAAGCTCCA-CCTTGGTAGGTGCCTGG-AGCTTAATCCCCTAAACACATC
* *
15211651 TTTGGTCCC-TAGCTGGTGCAACCAATCGTGTCCACCACCATCGGTGGTAGATGCTGGCCCATTG
64 TTTGG-CCCTTAGCTGGTGC-ACCAATCGAGTCCACCACCATCGATGGTAGATGCTGGCCCATTG
* * *
15211715 TTTCCCCGAGATGTTACCTCAGGCAACATCGAGATGCTAGCCCATCAAAAGTGTCTGGCCCTTGG
127 TTGCCCAGAGATGTTACCTCAGGAAACATCGAGATGCTAGCCCATCAAAAGTGTCTGGCCCTTGG
* * * *
15211780 CTAGTGTAGCCAATTGCCTCCAACACCATCAGCAGTAGATGCTTGCCCGTTATGGCCCTAAGATG
192 CTAGTGTAGCCAATCGCATCCAACACCATCAGCAGCAGATGCTTGCCCATTATGGCCCTAAGATG
* *
15211845 TTACCTCGTACACTTCCCTAGTGAGTGTTTGCCCATCAG
257 TTACCTCGTACACTTCCCTAGTGAGTGCTAGCCCATCAG
** * ** * *
15211884 TGCCTGATGTTGCCTTGAGTTCTTCCTTGGTAGGTAGCTTGGTGCTTAAT-CCCTCAAACACATC
1 TGCCTGATGTTGCCTCAAGCTCCACCTTGGTAGGT-GCCTGGAGCTTAATCCCCT-AAACACATC
* ** **
15211948 TTTGGCCCTTGGCTGGTGCACCCAATCGAGTCTGCCACCATCGATGGTAGATGCTGGGTCATTGT
64 TTTGGCCCTTAGCTGGTGCA-CCAATCGAGTCCACCACCATCGATGGTAGATGCTGGCCCATTGT
* * * *
15212013 TGCCTCAG-GATGTTGCCTCA-GAAACCATTGATATGCTAGCCCATCAACAGTGTCTGGCCCTTG
128 TGCC-CAGAGATGTTACCTCAGGAAA-CATCGAGATGCTAGCCCATCAAAAGTGTCTGGCCCTTG
* * * * * * * * *
15212076 GCTGGTGTGGGCAATCGCATCCAACACCAT-TGACAGCAGA-GGTTGGCCTATTATTGCCTTAGG
191 GCTAGTGTAGCCAATCGCATCCAACACCATCAG-CAGCAGATGCTT-GCCCATTATGGCCCTAAG
* * *
15212139 ATGTTACCTCAG-ACACTTCTCTGGTTG-GTGCTAGCCTC-TCGG
254 ATGTTACCTC-GTACACTTCCCTAG-TGAGTGCTAGCC-CATCAG
* * * * * *
15212181 TGCCTGATTTTGTCTCAAGCTCCACCTTGGTGGGTGCCTGGAGCTTGATCCCCTAAACTCCTCTT
1 TGCCTGATGTTGCCTCAAGCTCCACCTTGGTAGGTGCCTGGAGCTTAATCCCCTAAACACATCTT
* * * *
15212246 TGGTCCTTAGCTAGGGTG-ACCAATCGCA-TCCACCACCATCGATGGTAAATGCTAGCCCATTAT
66 TGGCCCTTAGCT--GGTGCACCAATCG-AGTCCACCACCATCGATGGTAGATGCTGGCCCATTGT
* * * * * * *
15212309 TG-CCATGGGATGTTACCTC-GAGCACCATCAAGATGCTAGCCTATCGACAA-TGTTTGGCCCTT
128 TGCCCA-GAGATGTTACCTCAG-GAAACATCGAGATGCTAGCCCATC-AAAAGTGTCTGGCCCTT
*
15212371 AGCTAGTG
190 GGCTAGTG
15212379 AGGCTTATCA
Statistics
Matches: 395, Mismatches: 78, Indels: 44
0.76 0.15 0.09
Matches are distributed among these distances:
294 2 0.01
295 2 0.01
296 151 0.38
297 230 0.58
298 10 0.03
ACGTcount: A:0.20, C:0.28, G:0.23, T:0.29
Consensus pattern (295 bp):
TGCCTGATGTTGCCTCAAGCTCCACCTTGGTAGGTGCCTGGAGCTTAATCCCCTAAACACATCTT
TGGCCCTTAGCTGGTGCACCAATCGAGTCCACCACCATCGATGGTAGATGCTGGCCCATTGTTGC
CCAGAGATGTTACCTCAGGAAACATCGAGATGCTAGCCCATCAAAAGTGTCTGGCCCTTGGCTAG
TGTAGCCAATCGCATCCAACACCATCAGCAGCAGATGCTTGCCCATTATGGCCCTAAGATGTTAC
CTCGTACACTTCCCTAGTGAGTGCTAGCCCATCAG
Found at i:15212941 original size:297 final size:293
Alignment explanation
Indices: 15212517--15213171 Score: 631
Period size: 297 Copynumber: 2.2 Consensus size: 293
15212507 TGGGTGCCTA
* * ** * **
15212517 GTGCTTAATCCCCAGAACACCTCTTTTATCCTTGGCTAGTGCGGCCAATTGCATCCACCACCATT
1 GTGCTTGATCCCCTGAACACCTCTTTGGTCCTTGGCTAGTGTGGCCAATCACATCCACCACCATT
* **** *
15212582 AATGGCAGATGCTGACCCATTGTTGCCCCAAGATATTGACTTGGACACCATCGAGATGCTAGCCC
66 AATGGCAAATGCTGACCCATTGTTGCCCCAAGATATTGACCCAAACACCAACGAGATGCTAGCCC
* ** * * * * * * ** *
15212647 ATCGATAGTGTTTGGCCTTTGGTTGGTGCCGCCAATCATGTCTAGCACCATCTGTGGCATATGCT
131 ATCG-CAGCATCTGGCCCTTGGCTGGTGCAGCCAATCATGTCCAACACCATAGGTGGCAAATGCT
* * * *
15212712 GGC-CTATTGTTGCCCT-GGACTGTTGCCTTAGACAACTCTCTAGCA-GG-TGTTGGCCTTGT-A
195 AGCAC-ATTGTTGCCCTAAGA-T-TTGCCTTAGACAACTCTCT--CATGGCTGCTAGCCTT-TCA
* **
15212772 GTGGCC-GATGTTGCCTCGAGCTCTTTCTTGACGGGTGA-CTCG
254 GT-GCCTGATGTTGCCTCG-GCTCCTTCTTGACAAGT-ACCT-G
* * **
15212814 GTGCTTGATCCCCTGAACACCTCTTTGGTCTTTGGCTAGTGTGGCCAATCACATCCACTATGATT
1 GTGCTTGATCCCCTGAACACCTCTTTGGTCCTTGGCTAGTGTGGCCAATCACATCCACCACCATT
** * * * * * * * *
15212879 GGTGGCAAATGCTGGCCTATTGTTGCCCCAGGATGTTGCCCCAAACACTAACGGGATGCTAGCCT
66 AATGGCAAATGCTGACCCATTGTTGCCCCAAGATATTGACCCAAACACCAACGAGATGCTAGCCC
* *
15212944 ATCGCAGCATCTGGCCCTTGGCTGGTGCAGCCAATCGTGTCCAACACCATAGGTGGTAAATGCTA
131 ATCGCAGCATCTGGCCCTTGGCTGGTGCAGCCAATCATGTCCAACACCATAGGTGGCAAATGCTA
*
15213009 GCACATTGTTGCCCTAAGATTTGCCTTAGACATCTCTCTCATGGCTGCTAGCCTTTCAGTGCCTG
196 GCACATTGTTGCCCTAAGATTTGCCTTAGACAACTCTCTCATGGCTGCTAGCCTTTCAGTGCCTG
* *
15213074 ATGTTGCCTTGGCTCCTTCTTGGCAAGTACCTG
261 ATGTTGCCTCGGCTCCTTCTTGACAAGTACCTG
* * * * * * **
15213107 GCGTTTGATCCCTTGAACAACTCTTTGGTCCTTGGCTTGTGTAGCCAATCATGTCCACCACCATT
1 GTGCTTGATCCCCTGAACACCTCTTTGGTCCTTGGCTAGTGTGGCCAATCACATCCACCACCATT
15213172 GACGATAGAT
Statistics
Matches: 288, Mismatches: 63, Indels: 18
0.78 0.17 0.05
Matches are distributed among these distances:
293 57 0.20
294 21 0.07
295 40 0.14
296 60 0.21
297 110 0.38
ACGTcount: A:0.19, C:0.28, G:0.23, T:0.30
Consensus pattern (293 bp):
GTGCTTGATCCCCTGAACACCTCTTTGGTCCTTGGCTAGTGTGGCCAATCACATCCACCACCATT
AATGGCAAATGCTGACCCATTGTTGCCCCAAGATATTGACCCAAACACCAACGAGATGCTAGCCC
ATCGCAGCATCTGGCCCTTGGCTGGTGCAGCCAATCATGTCCAACACCATAGGTGGCAAATGCTA
GCACATTGTTGCCCTAAGATTTGCCTTAGACAACTCTCTCATGGCTGCTAGCCTTTCAGTGCCTG
ATGTTGCCTCGGCTCCTTCTTGACAAGTACCTG
Found at i:15214551 original size:45 final size:45
Alignment explanation
Indices: 15214502--15214608 Score: 124
Period size: 45 Copynumber: 2.4 Consensus size: 45
15214492 GCACTTGTGA
* * * * * *
15214502 TGACCATCATTGGCACAAGCTGACCTTTGGTATAGGCAATTGCTT
1 TGACCACCATCGGCACAAGCTGACCCTTAGTATAAGCAATTGCCT
* * *
15214547 TGACCACCATCGGCACAAGTTGGCCCTTAGTATAAGCACTTGCCT
1 TGACCACCATCGGCACAAGCTGACCCTTAGTATAAGCAATTGCCT
*
15214592 TGACCACCATCGACACA
1 TGACCACCATCGGCACA
15214609 TGCATGCCTT
Statistics
Matches: 52, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 52 1.00
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (45 bp):
TGACCACCATCGGCACAAGCTGACCCTTAGTATAAGCAATTGCCT
Found at i:15217596 original size:178 final size:178
Alignment explanation
Indices: 15217289--15217625 Score: 387
Period size: 178 Copynumber: 1.9 Consensus size: 178
15217279 TTGGTGGGAC
** *
15217289 CAATCGCATCCAACATCATCGATGGTAGATACTGGCCTGTTGTTTCCTCGAGATGTTGCCTCAAA
1 CAATCGCATCCAACATCATCGATGGTAGATACTAACCTGTTGTTACCTCGAGATGTTGCCTCAAA
** * *** * *
15217354 CACCTCCCTTGTGGGTGCTGGCCCCTTGGTGCCTGATGGTGCCTCAAGCTTTCCTTGATGGGTGC
66 CACCTCCCTAATGAGTGCTGGCCCCTCAATGCCTGATGGTACCTCAAGCTCTCCTTGATGGGTGC
*
15217419 CTGGCACTTGAT-CCCTCGAACACCCCTTTTGTCTTTGCCTACTACAGG
131 CTAGCACTTGATCCCCT-GAACACCCCTTTTGTCTTTGCCTACTACAGG
* * *
15217467 CAATCGCATCCACCAT-AGTCGATGGTAGATGCTAACCTGTTGTTACC-CAGAGATGTTGCCTCG
1 CAATCGCATCCAACATCA-TCGATGGTAGATACTAACCTGTTGTTACCTC-GAGATGTTGCCTCA
* * * * *
15217530 GACACCTCTCTAATGAGTG-TGGCCCCTCAATG-CTCGATGTTACCTCAAGCTCCTCTTTGGTGG
64 AACACCTCCCTAATGAGTGCTGGCCCCTCAATGCCT-GATGGTACCTCAAGCT-CTCCTTGATGG
** *
15217593 GTGCCTAGTGCTTGATCCCCTGAACACCTCTTT
127 GTGCCTAGCACTTGATCCCCTGAACACCCCTTT
15217626 GGTCCTTGGC
Statistics
Matches: 131, Mismatches: 23, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
176 2 0.02
177 26 0.20
178 99 0.76
179 4 0.03
ACGTcount: A:0.18, C:0.30, G:0.22, T:0.30
Consensus pattern (178 bp):
CAATCGCATCCAACATCATCGATGGTAGATACTAACCTGTTGTTACCTCGAGATGTTGCCTCAAA
CACCTCCCTAATGAGTGCTGGCCCCTCAATGCCTGATGGTACCTCAAGCTCTCCTTGATGGGTGC
CTAGCACTTGATCCCCTGAACACCCCTTTTGTCTTTGCCTACTACAGG
Found at i:15221511 original size:45 final size:45
Alignment explanation
Indices: 15221428--15221513 Score: 120
Period size: 45 Copynumber: 1.9 Consensus size: 45
15221418 GATTGTGCCA
**
15221428 ATGGTGGTTGAGGCAAGTGCTCATACCAAGGGCCAGCTTGTGCTG
1 ATGGTGGTTGAGGCAAGTGCTCATACCAAAAGCCAGCTTGTGCTG
* *
15221473 ATGGTGGTTGAGGCAATTGC-CAATACCAAAAGCTAGCTTGT
1 ATGGTGGTTGAGGCAAGTGCTC-ATACCAAAAGCCAGCTTGT
15221514 ACCGATGATG
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
44 1 0.03
45 35 0.97
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (45 bp):
ATGGTGGTTGAGGCAAGTGCTCATACCAAAAGCCAGCTTGTGCTG
Found at i:15224814 original size:296 final size:293
Alignment explanation
Indices: 15223973--15225091 Score: 775
Period size: 296 Copynumber: 3.8 Consensus size: 293
15223963 CACTATCGAT
* * * * * * * * * **
15223973 AGGCCAGCATCTCGATGGTGTCCTAGGTAACATCTTAAGGTAATAATGGGCCAGCACCTGTCATC
1 AGGCCAACACCTCAATGGTATCCAAGGTAACATCCTAGGGTAACAATGGGCCAGCATCTACCATC
* * * * *
15224038 AATGGTGGTGGACACGATTGGTTGCACTAGCCAAGGACCAAAGAGGTCTTCAGGGGATCAAGTGC
66 GATGGT-GTGGACATGATTGGTTACACCAGCCAAGGACCAAAGAGGTGTTCAGGGGATCAAGTGC
* * * * * * *
15224103 CAGGCACCTGCCATAGAGGAGTTTGAGGCAACATCGGGCATCGAAGGGCCAGCACCTACTAGAGA
130 CA-GCACCCGCCAAAGAGGAGCTTAAGGCAACATC-GGCATCAAAGGGCTAGCACCTACCAGAGA
* * * * * * * * * *
15224168 GGTGTTTGAGGCAACATCCCAAGACAACAATGGGTCAACATCTACC-GCTGATGGTGTTGGATAC
193 GGTGTCTAAGGCAACATCCCAGGGCAACAACGGGCCAGCATCTGCCAAC-GATGGTGTTGGACAC
** *
15224232 AATTAGCTGCACTCACCAAAGGCCAGACGCTATCAAC
257 AATTAGCCACACTCACCAAAAGCCAGACGCTATCAAC
* * * * * * *
15224269 AGGCTAACATCTCAATGGTGTCCAAGGTAACATCCTGGGGTAACAATGGGTCAGCATCTGCCACC
1 AGGCCAACACCTCAATGGTATCCAAGGTAACATCCTAGGGTAACAATGGGCCAGCATCTACCATC
*** * *
15224334 GATGGTAGTGGACATGATTGGTTACACCAATTAAGGACCAAAGAGTTGTTCAGGGGATTAAGTGC
66 GATGGT-GTGGACATGATTGGTTACACCAGCCAAGGACCAAAGAGGTGTTCAGGGGATCAAGTGC
* * * * * * * *
15224399 CAAGCACCCACTAAGGAGGACCTTAAGGTAACATCGAGCATCAAGGGGCTAGC-CTCTATCAGGG
130 C-AGCACCCGCCAAAGAGGAGCTTAAGGCAACATCG-GCATCAAAGGGCTAGCAC-CTACCAGAG
* * * * * * * * *
15224463 AGGTGTCCAAGGTAACATCTCGGGGTAGCAACGGGCCAGTATCTGCTATCGATGGTGTTGGACAC
192 AGGTGTCTAAGGCAACATCCCAGGGCAACAACGGGCCAGCATCTGCCAACGATGGTGTTGGACAC
* * *
15224528 AATTGGCCACAC-CAGCCAAAAGCTAGACGCTATCATC
257 AATTAGCCACACTCA-CCAAAAGCCAGACGCTATCAAC
* ** ** * * * *
15224565 AGGCCAGCACCTTGATGGTATCTGAGGTAATATCCTAGTGTAACAATGGGCCCGTATCTACCATC
1 AGGCCAACACCTCAATGGTATCCAAGGTAACATCCTAGGGTAACAATGGGCCAGCATCTACCATC
* * * *
15224630 GATGGTGTTGGACATGATTGGTCACCCCAGCCAAAGACCAAAAAGGTGTTCAGGGGATCAAGTGC
66 GATGGTG-TGGACATGATTGGTTACACCAGCCAAGGACCAAAGAGGTGTTCAGGGGATCAAGTGC
* * * *
15224695 CTAGCACCCGCCAAAAAGGAGCTCAAGGCAACATCAGGCATCAAAGGGCTAGCACCCACCAGAAA
130 C-AGCACCCGCCAAAGAGGAGCTTAAGGCAACATC-GGCATCAAAGGGCTAGCACCTACCAGAGA
* * * * ****
15224760 GGTGTCTAAGACAACATCCCAGGGCAACAACAGGCCTGCATATGCCAACGATGGTGTTGGATGTG
193 GGTGTCTAAGGCAACATCCCAGGGCAACAACGGGCCAGCATCTGCCAACGATGGTGTTGGACACA
* * * * * *
15224825 ATTGGCCATA-TCAGGCAAAGGCCA-A-GCATTGTCAAT
258 ATTAGCCACACTCA-CCAAAAGCCAGACGC--TATCAAC
* **** * * *** * * *
15224861 AAGCTTGTATCCT-GATGGTGTTTGAGGTAACAT-CTCGGGGTAACAATGGGCTAACATCTACCA
1 AGGCCAACA-CCTCAATGGTATCCAAGGTAACATCCT-AGGGTAACAATGGGCCAGCATCTACCA
* *** * *
15224924 TTGATGGTGGTGGATGCGATTGGTTGCACCAGCCAAGGACCAAAGAGGTGTTCAGGGGATCAAGC
64 TCGATGGT-GTGGACATGATTGGTTACACCAGCCAAGGACCAAAGAGGTGTTCAGGGGATCAAGT
* ** * * * * *
15224989 GCCAGCCATCATCCAAGGAGGAGCTT-AGGCCAACATCGAGCAGT-GAGGGGCTAGCACCCACTA
128 GCCAG-CACCCGCCAAAGAGGAGCTTAAGG-CAACATCG-GCA-TCAAAGGGCTAGCACCTACCA
* * * *
15225052 GGGTGGTGTTCTAA-GCAACATCCTATGGCAACAACAGGGC
189 GAGAGGTG-TCTAAGGCAACATCCCAGGGCAACAAC-GGGC
15225092 AACATTTACT
Statistics
Matches: 640, Mismatches: 163, Indels: 39
0.76 0.19 0.05
Matches are distributed among these distances:
294 2 0.00
295 14 0.02
296 607 0.95
297 17 0.03
ACGTcount: A:0.29, C:0.24, G:0.27, T:0.20
Consensus pattern (293 bp):
AGGCCAACACCTCAATGGTATCCAAGGTAACATCCTAGGGTAACAATGGGCCAGCATCTACCATC
GATGGTGTGGACATGATTGGTTACACCAGCCAAGGACCAAAGAGGTGTTCAGGGGATCAAGTGCC
AGCACCCGCCAAAGAGGAGCTTAAGGCAACATCGGCATCAAAGGGCTAGCACCTACCAGAGAGGT
GTCTAAGGCAACATCCCAGGGCAACAACGGGCCAGCATCTGCCAACGATGGTGTTGGACACAATT
AGCCACACTCACCAAAAGCCAGACGCTATCAAC
Found at i:15226389 original size:63 final size:60
Alignment explanation
Indices: 15226246--15226471 Score: 179
Period size: 63 Copynumber: 3.7 Consensus size: 60
15226236 TTTATGAGCA
* * ** * * *
15226246 GATTATTCAAGGTGTTTTTTGCCTAAAACACCTTTAATAATCCCTTATAAAAAATTGAAAGG
1 GATTATTGAAGGCGTTTTTTGCAAAAAACGCCTTCAATAATCCCTTA-AAAAAATT-AGAGG
* * * * *
15226308 GATTACTGAAGACATTTTTTTACAAAAAACGCCTTCAATAATCCCCTCTAAAAAAATTAGGGG
1 GATTATTGAAGGC-GTTTTTTGCAAAAAACGCCTTCAATAAT-CCCT-TAAAAAAATTAGAGG
* * * * * *
15226371 GATTATTGAAGGTGTTTTTGGCTAAAAAATG-CTATCAATAATCGCTTTTAAAAAATT-GTGG
1 GATTATTGAAGGCGTTTTTTGC-AAAAAACGCCT-TCAATAATC-CCTTAAAAAAATTAGAGG
*
15226432 GATTATTGAAGGCGTTTTTTGTC-AAAAATGCCTTCAATAA
1 GATTATTGAAGGCGTTTTTTG-CAAAAAACGCCTTCAATAA
15226472 ATATCCTTGT
Statistics
Matches: 132, Mismatches: 24, Indels: 18
0.76 0.14 0.10
Matches are distributed among these distances:
60 14 0.11
61 24 0.18
62 28 0.21
63 52 0.39
64 12 0.09
65 2 0.02
ACGTcount: A:0.36, C:0.14, G:0.15, T:0.35
Consensus pattern (60 bp):
GATTATTGAAGGCGTTTTTTGCAAAAAACGCCTTCAATAATCCCTTAAAAAAATTAGAGG
Found at i:15226987 original size:62 final size:62
Alignment explanation
Indices: 15226872--15227264 Score: 281
Period size: 63 Copynumber: 6.3 Consensus size: 62
15226862 TTTTTGCCTG
* * *
15226872 AAATGCCTTCAATAAT-CCTT-TATAAAAAATTGGAA-GGGATTATTAAAGGCATTTTTTTACAA
1 AAATGCCTTCAATAATCCCTTCCA-AAAAAATT--AAGGGGATTATTGAAGGCATTTTTGT-CAA
15226934 A
62 A
* *
15226935 AAATGCCTTCAGTAATCCCTTCCAAAAAAATTACAGGGGA-T-TTGAAGGCATTTTTGGCCAAA
1 AAATGCCTTCAATAATCCCTTCCAAAAAAATTA-AGGGGATTATTGAAGGCATTTTT-GTCAAA
* * *
15226997 AAATGCCATCAATAATCCCCTCC-AAAAAATTGGAGGGGATTATTGAAGGCATTTTTAGTC-AA
1 AAATGCCTTCAATAATCCCTTCCAAAAAAATT-AAGGGGATTATTGAAGGCATTTTT-GTCAAA
* * * * *
15227059 AAATGCCTCCAATAAT--CTTCTCATATAAAATGAAGGGGATTATTGAAAGCATTTTTTTGCAAA
1 AAATGCCTTCAATAATCCCTTC-CA-AAAAAATTAAGGGGATTATTGAAGGCATTTTTGT-CAAA
* * ***** **
15227122 AAATACCTTTAATAATCCCTTCCAATTTTTTGTAA-GGGATTATTGAAGGTTTTTTTGTCAAA
1 AAATGCCTTCAATAATCCCTTCCAAAAAAAT-TAAGGGGATTATTGAAGGCATTTTTGTCAAA
* * * ** *
15227184 AAATGCCTTTACTAGT-CC-TCTC-AAAAAATTGGGGGGGATTATTGAAGGCATTTTTTTTTCAA
1 AAATGCCTTCAATAATCCCTTC-CAAAAAAATT-AAGGGGATTATTGAAGGCA--TTTTTGTCAA
15227246 A
62 A
* *
15227247 AAAAGACTTCAATAATCC
1 AAATGCCTTCAATAATCC
15227265 TCTTTGCAAA
Statistics
Matches: 259, Mismatches: 49, Indels: 43
0.74 0.14 0.12
Matches are distributed among these distances:
59 1 0.00
60 7 0.03
61 33 0.13
62 95 0.37
63 97 0.37
64 21 0.08
65 5 0.02
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.33
Consensus pattern (62 bp):
AAATGCCTTCAATAATCCCTTCCAAAAAAATTAAGGGGATTATTGAAGGCATTTTTGTCAAA
Found at i:15227060 original size:125 final size:125
Alignment explanation
Indices: 15226872--15227264 Score: 359
Period size: 125 Copynumber: 3.1 Consensus size: 125
15226862 TTTTTGCCTG
* ** * *
15226872 AAATGCCTTCAATAATCCTTTATAAAAAATTGGAAGGGATTATTAAAGGCATTTTTTTACAAAAA
1 AAATGCCTTCAATAATCCCTTCCAAAAAATTGGAAGGGATTATTGAAGGCATTTTTGT-CAAAAA
* * *
15226937 ATGCCTTCAGTAATCCCTTC-CA-AAAAAATTACAGGGGA-T-TTGAAGGCA-TTTTTGGCCAAA
65 ATGCCTTCAATAAT--CTTCTCATAAAAAATGA-AGGGGATTATTGAAAGCATTTTTTGG-CAAA
* * *
15226997 AAATGCCATCAATAATCCCCTCCAAAAAATTGGAGGGGATTATTGAAGGCATTTTTAGTC-AAAA
1 AAATGCCTTCAATAATCCCTTCCAAAAAATTGGAAGGGATTATTGAAGGCATTTTT-GTCAAAAA
* * *
15227061 ATGCCTCCAATAATCTTCTCATATAAAATGAAGGGGATTATTGAAAGCATTTTTTTGCAAA
65 ATGCCTTCAATAATCTTCTCATAAAAAATGAAGGGGATTATTGAAAGCATTTTTTGGCAAA
* * **** * **
15227122 AAATACCTTTAATAATCCCTTCCAATTTTTTGTAAGGGATTATTGAAGGTTTTTTTGTCAAAAAA
1 AAATGCCTTCAATAATCCCTTCCAAAAAATTGGAAGGGATTATTGAAGGCATTTTTGTCAAAAAA
* * * * * ** * **
15227187 TGCCTTTACTAGTCCTCTCA-AAAAATTGGGGGGGATTATTGAAGGCATTTTTTTTTCAAA
66 TGCCTTCAATAATCTTCTCATAAAAAATGAAGGGGATTATTGAAAGCA-TTTTTTGGCAAA
* *
15227247 AAAAGACTTCAATAATCC
1 AAATGCCTTCAATAATCC
15227265 TCTTTGCAAA
Statistics
Matches: 219, Mismatches: 41, Indels: 16
0.79 0.15 0.06
Matches are distributed among these distances:
122 4 0.02
123 8 0.04
124 49 0.22
125 151 0.69
126 7 0.03
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.33
Consensus pattern (125 bp):
AAATGCCTTCAATAATCCCTTCCAAAAAATTGGAAGGGATTATTGAAGGCATTTTTGTCAAAAAA
TGCCTTCAATAATCTTCTCATAAAAAATGAAGGGGATTATTGAAAGCATTTTTTGGCAAA
Found at i:15227266 original size:63 final size:63
Alignment explanation
Indices: 15226872--15227267 Score: 346
Period size: 62 Copynumber: 6.3 Consensus size: 63
15226862 TTTTTGCCTG
* ** * *
15226872 AAATGCCTTCAATAATCCTTTATAAAAAATTGGAAGGGATTATTAAAGGCATTTTTT-TACAAA
1 AAATGCCTTCAATAATCCTCTCCAAAAAATTGGAGGGGATTATTGAAGGCATTTTTTGT-CAAA
* ** * *
15226935 AAATGCCTTCAGTAATCC-CTTCCAAAAAAATTACAGGGGA-T-TTGAAGGCATTTTTGGCCAAA
1 AAATGCCTTCAATAATCCTC-TCC-AAAAAATTGGAGGGGATTATTGAAGGCATTTTTTGTCAAA
* * *
15226997 AAATGCCATCAATAATCCCCTCCAAAAAATTGGAGGGGATTATTGAAGGCATTTTTAGTC-AA
1 AAATGCCTTCAATAATCCTCTCCAAAAAATTGGAGGGGATTATTGAAGGCATTTTTTGTCAAA
* * * *
15227059 AAATGCCTCCAATAATCTTCT-CATATAAAA-TGAAGGGGATTATTGAAAGCATTTTTT-TGCAA
1 AAATGCCTTCAATAATCCTCTCCA-A-AAAATTGGAGGGGATTATTGAAGGCATTTTTTGT-CAA
15227121 A
63 A
* * **** * * *
15227122 AAATACCTTTAATAATCC-CTTCCAATTTTTTGTAAGGGATTATTGAAGG-TTTTTTTGTCAAA
1 AAATGCCTTCAATAATCCTC-TCCAAAAAATTGGAGGGGATTATTGAAGGCATTTTTTGTCAAA
* * * * *
15227184 AAATGCCTTTACTAGTCCTCT-CAAAAAATTGGGGGGGATTATTGAAGGCATTTTTTTTTCAAA
1 AAATGCCTTCAATAATCCTCTCCAAAAAATTGGAGGGGATTATTGAAGGCA-TTTTTTGTCAAA
* *
15227247 AAAAGACTTCAATAATCCTCT
1 AAATGCCTTCAATAATCCTCT
15227268 TTGCAAATAA
Statistics
Matches: 264, Mismatches: 52, Indels: 34
0.75 0.15 0.10
Matches are distributed among these distances:
61 37 0.14
62 109 0.41
63 103 0.39
64 15 0.06
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.34
Consensus pattern (63 bp):
AAATGCCTTCAATAATCCTCTCCAAAAAATTGGAGGGGATTATTGAAGGCATTTTTTGTCAAA
Found at i:15229617 original size:34 final size:34
Alignment explanation
Indices: 15229579--15229664 Score: 127
Period size: 34 Copynumber: 2.5 Consensus size: 34
15229569 TTTTAAATAC
*
15229579 AAATGCCACTAAATTTAGTGGCATTTGTATCAAA
1 AAATGCCACTAAATTTAGTGGCATTTGTATAAAA
*
15229613 AAATGTCACTAAATTTAGTGGCATTTGTATAAAA
1 AAATGCCACTAAATTTAGTGGCATTTGTATAAAA
* **
15229647 AAATACTGCTAAATTTAG
1 AAATGCCACTAAATTTAG
15229665 CAACGTTTGT
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 46 1.00
ACGTcount: A:0.41, C:0.12, G:0.14, T:0.34
Consensus pattern (34 bp):
AAATGCCACTAAATTTAGTGGCATTTGTATAAAA
Found at i:15234988 original size:45 final size:45
Alignment explanation
Indices: 15234901--15234989 Score: 115
Period size: 45 Copynumber: 2.0 Consensus size: 45
15234891 ATCCATGTAC
* ** * *
15234901 CGATGGTGGTCAAGGCAAGTGCCCGTACCAAGGGTCAGCTTGTGT
1 CGATGGTGGCCAAGGCAAGTGCCCGTACCAAAAGCCAACTTGTGT
* *
15234946 CGATGGTGGCCAAGGCAATTGCTCGTACCAAAAGCCAACTTGTG
1 CGATGGTGGCCAAGGCAAGTGCCCGTACCAAAAGCCAACTTGTG
15234990 CAGATGATGG
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.24, C:0.24, G:0.31, T:0.21
Consensus pattern (45 bp):
CGATGGTGGCCAAGGCAAGTGCCCGTACCAAAAGCCAACTTGTGT
Found at i:15237686 original size:294 final size:295
Alignment explanation
Indices: 15237093--15237804 Score: 782
Period size: 294 Copynumber: 2.4 Consensus size: 295
15237083 ACAATAGGCT
* * ** *
15237093 AGCATCGATCGCTGATGGTGGTAG-ATGCGATTGGCTGCACCAGTTAAAGACCAAAAAGGTGTTT
1 AGCATCTATCACTGATGGTGGT-GTATGCGATTGGCTGCACCAGCCAAAGACCAAAGAGGTG-TT
* * * * * * ** *
15237157 GGGGGATCAAGCGCT-AGTTACCTACTAAATAGGAGCTTGACGTAACATCAAGCATCGAGGGGCT
64 GGGGGATCAAGCACTAAG-CACCCACCAAAGAGGAGCTTGAGGTAACATCGGGCATCGAAGGGCT
** *
15237221 AGCACCTATCAGGAAGGTGTCTGAGTTAACATCCTAAGGCAACAATGGACTAGCATCTACCACCG
128 AGCACCTATCAGGAAGGTGTCTGAGGCAACATCCTAAGGCAACAATGGACTAACATCTACCACCG
* * ** *
15237286 ATGGTGTTGGACGTGATTGGCCGCACCAGCCAAGGGTTAGATGCTATCGATAGGCTAGCATCCCA
193 ATGGTGTTGGACATGATTGGCCGCACCAGCCAAAGGCAAGATGCTATCAATAGGCTAGCATCCCA
* *
15237351 ATGGTGTCTGAGGTAACATCCAAAGGCAACAATGGGCC
258 ATAGTGTCTGAGGTAACATCCAAAGGCAACAACGGGCC
* *
15237389 AGCATCTATCA-TCGATGGTGGTGTATGCGATTGGCCGCACTAGCCAAAGACCAAAGAGGTGTTC
1 AGCATCTATCACT-GATGGTGGTGTATGCGATTGGCTGCACCAGCCAAAGACCAAAGAGGTGTT-
*
15237453 GAGGGATCAAGCACTAAGCACCCACCAAA-AGGAGCTTGAGGTAACATCGGGCATCGAAGGGCTA
64 GGGGGATCAAGCACTAAGCACCCACCAAAGAGGAGCTTGAGGTAACATCGGGCATCGAAGGGCTA
* *
15237517 GCACCTA-CTAGGGAGGTGTCTGAGGCAACAT-CTAGAGGCAATC-ATGG-GTCAACATCTACCA
129 GCACCTATC-AGGAAGGTGTCTGAGGCAACATCCTA-AGGCAA-CAATGGACT-AACATCTACCA
* * ** * *
15237578 CTGATGGTGTT-GACATGATTGGCTGCACCAGTTAAAGGCAAGATGCTATTAATGGGCTAGCAT-
190 CCGATGGTGTTGGACATGATTGGCCGCACCAGCCAAAGGCAAGATGCTATCAATAGGCTAGCATC
** *
15237641 CCAGATAGTGTCTGAGGTAACATCTTAGGGCAACAACGGGCC
255 CCA-ATAGTGTCTGAGGTAACATCCAAAGGCAACAACGGGCC
* * * * * *
15237683 AGCATCTATCACTGATGGTGGT-TGACGTGATTAGTTGCACCAGCCAAGGACCAAAGAGTTGTTG
1 AGCATCTATCACTGATGGTGGTGT-ATGCGATTGGCTGCACCAGCCAAAGACCAAAGAGGTGTTG
* * * * *
15237747 GGGGAATCAAGCTCTAGGCAACCCACCAAAGAGGAACTTAAGGCAACAT-GGGCATCGA
65 GGGG-ATCAAGCACTAAGC-ACCCACCAAAGAGGAGCTTGAGGTAACATCGGGCATCGA
15237805 GAGGCCAATA
Statistics
Matches: 351, Mismatches: 51, Indels: 29
0.81 0.12 0.07
Matches are distributed among these distances:
293 8 0.02
294 143 0.41
295 111 0.32
296 87 0.25
297 2 0.01
ACGTcount: A:0.29, C:0.22, G:0.28, T:0.21
Consensus pattern (295 bp):
AGCATCTATCACTGATGGTGGTGTATGCGATTGGCTGCACCAGCCAAAGACCAAAGAGGTGTTGG
GGGATCAAGCACTAAGCACCCACCAAAGAGGAGCTTGAGGTAACATCGGGCATCGAAGGGCTAGC
ACCTATCAGGAAGGTGTCTGAGGCAACATCCTAAGGCAACAATGGACTAACATCTACCACCGATG
GTGTTGGACATGATTGGCCGCACCAGCCAAAGGCAAGATGCTATCAATAGGCTAGCATCCCAATA
GTGTCTGAGGTAACATCCAAAGGCAACAACGGGCC
Found at i:15237915 original size:21 final size:21
Alignment explanation
Indices: 15237889--15237930 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
15237879 GTGTTGGACA
*
15237889 TGATTGGTTGTACTAGCCAAG
1 TGATTGGTTGCACTAGCCAAG
15237910 TGATTGGTTGCACTAGCCAAG
1 TGATTGGTTGCACTAGCCAAG
15237931 GACCTGGCAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.31
Consensus pattern (21 bp):
TGATTGGTTGCACTAGCCAAG
Found at i:15239521 original size:27 final size:27
Alignment explanation
Indices: 15239463--15239521 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
15239453 ACTCCTTCCA
* *
15239463 AAAAAATTTTAAAAAATATCAAATCAT
1 AAAAAATTTCAAAAAATATCAAATAAT
* *
15239490 AAAAAATTTCAAAAATTATGAAA-AAT
1 AAAAAATTTCAAAAAATATCAAATAAT
*
15239516 AGAAAA
1 AAAAAA
15239522 CGAGTCATGT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.26
27 20 0.74
ACGTcount: A:0.66, C:0.05, G:0.03, T:0.25
Consensus pattern (27 bp):
AAAAAATTTCAAAAAATATCAAATAAT
Found at i:15242337 original size:297 final size:298
Alignment explanation
Indices: 15241452--15245647 Score: 2300
Period size: 296 Copynumber: 14.2 Consensus size: 298
15241442 ATTGGCTACT
* * * **
15241452 GATGGTGGT-GACATGATTGGTCGCACTAGCCTAAGGACCAAACG-GGTGTTCGAGACATCAAGC
1 GATGGTGGTGGATACGATTGGTCGCACCAGCC-AAGGACCAAA-GAGGTGTTCGAGGGATCAAGC
* * * * ** * ** * *
15241515 A-CCAAGCACCC-CCTAAAGAGAAGCTCAAGGCAACATCAGGCACCG-TGGGGCTAGCACCTACC
64 ATCTAGGCACCCACC-AAGGAGGAGCTTGAGGCAACATCGGGCACCGAAAGGGCTAGCACCCATC
* * * * * * * * *
15241577 AGAGAGGTGTCTAAGGGAACATCCTAGAGCAATAATAGGCTAGCATTTGTCG-CTGATGGTGTTG
128 AAAGAGGTGTTTGAGGCAACATCCCAGGGCAACAATGGGCTAGCATTTGCCGTC-GATGGTGTTG
* * * * * *
15241641 GACACAATTGGCTGCACCAGCCAAAGGCTAGATGTTGTCAATGGGCGAGCATCCTGATGGTGTCT
192 GACACAATTGGCTGCACCAGCCAAGGGCTAGATGCTATCGATGGGCCAGCATCCCGATGGTGTCT
* * * * *
15241706 GAGGTAACATCCTAGGGAAACAATGGCCCAACATCTACCACC
257 AAGGTAACATCTTAGGGCAACAATGGGCCAACATCTACCATC
* * ** * * *
15241748 GATAGTGGTGGATGCGATAAGCCACACCAACCAAGGACCAAAGAGGTGTTCGAGGGATCAAG--T
1 GATGGTGGTGGATACGATTGGTCGCACCAGCCAAGGACCAAAGAGGTGTTCGAGGGATCAAGCAT
* ** * ** * *
15241811 GCTAGGCACCCTCCAAGGAGGAGCTCAAGGCAATATTAGGCACCG-AGGGGCTAGCACCTATC-A
66 -CTAGGCACCCACCAAGGAGGAGCTTGAGGCAACATCGGGCACCGAAAGGGCTAGCACCCATCAA
* ** * * * * * *
15241874 AGAAGGTGTCTGAGGCAACAT-CTTGGTGCAACAACGGGCCAGCATTTGCTGCCAATGGTGTTAG
130 AG-AGGTGTTTGAGGCAACATCCCAGG-GCAACAATGGGCTAGCATTTGCCGTCGATGGTGTTGG
* * *
15241938 A-AGCGATTGGCTGCACCAGCCATA-GGCTAGACGCTGTC-A-GCAGGCCAGCATCCCGATGGTG
193 ACA-CAATTGGCTGCACCAGCCA-AGGGCTAGATGCTATCGATG--GGCCAGCATCCCGATGGTG
* * * * *
15241999 TTTGAGGTAACATC-TCGAGGTAATAATGGGCCAGA-ATCTACCATC
254 TCTAAGGTAACATCTTAG-GGCAACAATGGGCCA-ACATCTACCATC
*
15242044 GATGGTGGTGGATACGATTGGTTGCACCAGCCAAGGACCAAAGAGGTGTTCGAGGGATCAAGCAT
1 GATGGTGGTGGATACGATTGGTCGCACCAGCCAAGGACCAAAGAGGTGTTCGAGGGATCAAGCAT
* * * ** * * *
15242109 CGA-GCACCCACCAAGGAGGAGCTTGAGGCAACTTCGAGCATTGAAAGGGCCAACACCCACCAAA
66 CTAGGCACCCACCAAGGAGGAGCTTGAGGCAACATCGGGCACCGAAAGGGCTAGCACCCATCAAA
* * * *
15242173 GAGGTGTTTGAGGCAACATCCCAGGCCAACATTGGGCTGGCATATGCCGTCGATGGTGTTGGACA
131 GAGGTGTTTGAGGCAACATCCCAGGGCAACAATGGGCTAGCATTTGCCGTCGATGGTGTTGGACA
** * * ***
15242238 CAATTGGCCACACCAACCAAGGGCTGGATGCTATCGACAAGCCAGCATCCCGATGGTGTCTAAGG
196 CAATTGGCTGCACCAGCCAAGGGCTAGATGCTATCGATGGGCCAGCATCCCGATGGTGTCTAAGG
** * *
15242303 TAACATCCCAGGGCAACAATGGGCCAGCATCTACCATT
261 TAACATCTTAGGGCAACAATGGGCCAACATCTACCATC
** * *** * * * * * *
15242341 GATGGTTATGGATATGATTAACCAG-ACCAACGAAAGACCAAATAGGTGTTTG-GAGGATCAAAC
1 GATGGTGGTGGATACGATTGGTC-GCACCAGCCAAGGACCAAAGAGGTGTTCGAG-GGATCAAGC
* *
15242404 AT-TAGGCACCCACCAAGGAGGAGCTTAAGGCAACATCGGGCATCGAAA-GGCTAGCACCCATCA
64 ATCTAGGCACCCACCAAGGAGGAGCTTGAGGCAACATCGGGCACCGAAAGGGCTAGCACCCATCA
** * * * * * * ** * * *
15242467 GGGAGGTGTTTAAAGCTACATCTCAGGGCAACAACGGGCTAGCATCTATCATCGATTGTGTTGCA
129 AAGAGGTGTTTGAGGCAACATCCCAGGGCAACAATGGGCTAGCATTTGCCGTCGATGGTGTTGGA
** * * ** * *
15242532 -AGCAATTGGCCACACCAGTCAAGGGCCAGACACTATCGATGGGCCAGCATCCCAATGGTGTCCA
194 CA-CAATTGGCTGCACCAGCCAAGGGCTAGATGCTATCGATGGGCCAGCATCCCGATGGTGTCTA
* * * *
15242596 AGGCAACATCCTAGGGTTAACAATAGGCCAACATCTA-C-TGC
258 AGGTAACATCTTAGGG-CAACAATGGGCCAACATCTACCAT-C
* * * * * *
15242637 TAATGGTGGTGGACACGATTGGTCGCACCAGCCAAAGACCCAAGTGGTGTTCG-GGGAATGAAG-
1 -GATGGTGGTGGATACGATTGGTCGCACCAGCCAAGGACCAAAGAGGTGTTCGAGGG-ATCAAGC
** * * * *
15242700 -TGCTAGGCACCTGCCAAGGAGAAGCTTAAGGCAACATCAGGG-ACTG-AAGGG-TCAACACCCA
64 AT-CTAGGCACCCACCAAGGAGGAGCTTGAGGCAACATC-GGGCACCGAAAGGGCT-AGCACCCA
* * * * ** **
15242761 TCAAGGAAGAGTCCT-AGGCAACATCCCAGGGTGACAATGGGCTAGC-TTCTGCTAT-GATGGTG
126 TCAAAGAGGTGT-TTGAGGCAACATCCCAGGGCAACAATGGGCTAGCATT-TGCCGTCGATGGTG
* * * * * * *
15242823 TTGGATACGATTGGTTGCACCAGCCAAGGGCCAGACGTTATCGATGGGCGGGAGCATCCCTGATG
189 TTGGACACAATTGGCTGCACCAGCCAAGGGCTAGATGCTATCGATGGGC--CAGCATCCC-GATG
* *
15242888 GTGTCTAA-G------C------CAACAATGGGCCAACAT-TGGCC-GC
251 GTGTCTAAGGTAACATCTTAGGGCAACAATGGGCCAACATCT-ACCATC
* * * * * ** * *
15242922 TGATAGTGGTGGACATGATTGGTCACACTAGCCAAGGACCAAA-AGGGTGTTTAAAGGATCAA-A
1 -GATGGTGGTGGATACGATTGGTCGCACCAGCCAAGGACCAAAGA-GGTGTTCGAGGGATCAAGC
* * * * * **
15242985 AACCAGGCACCTATCAAGGAGGAGCTCGAGGCAACATCGGGCACC-ATGGGGCTAGCA-CC-TGC
64 ATCTAGGCACCCACCAAGGAGGAGCTTGAGGCAACATCGGGCACCGAAAGGGCTAGCACCCAT-C
* * * * * * *** ** *
15243047 TAGAGAAGTGTCTAAGGGAACATCCCAGAGCAACAACATGCTAGCATTTATCGTCGATGGTGTTA
128 -AAAGAGGTGTTTGAGGCAACATCCCAGGGCAACAATGGGCTAGCATTTGCCGTCGATGGTGTTG
* * * * * * *
15243112 GACACAATTGGTTGCACCAGCCAAAGGCTAGATGTTGTCAATGGGCCAGCATCTCGATGGTGTCC
192 GACACAATTGGCTGCACCAGCCAAGGGCTAGATGCTATCGATGGGCCAGCATCCCGATGGTGTCT
* * * * *
15243177 AAAGTAACATCTTAGGGAAACAATGGCCCAATATCTGCCA-C
257 AAGGTAACATCTTAGGGCAACAATGGGCCAACATCTACCATC
* * * * *
15243218 TGATGGTGGTGGATGCGATTAGCCACACCAACCAAGGACCAAAGAGGTGTTCGAGGGATCAAGC-
1 -GATGGTGGTGGATACGATTGGTCGCACCAGCCAAGGACCAAAGAGGTGTTCGAGGGATCAAGCA
* * * * * * * * *
15243282 GCTAGGCACCCTCTAAAGAGGAGCTCGAGGCAATATTGGGCACCG-AGGGGCTAGCACCTATC-A
65 TCTAGGCACCCACCAAGGAGGAGCTTGAGGCAACATCGGGCACCGAAAGGGCTAGCACCCATCAA
* ** * * * * * *
15243345 AGAAGGTGTTTGAGGTAACAT-CTTGGTGCAACAACGGGCCAGCATTTGCTGCCAATGGTGTTAG
130 AG-AGGTGTTTGAGGCAACATCCCAGG-GCAACAATGGGCTAGCATTTGCCGTCGATGGTGTTGG
* * * * * * *
15243409 A-AGCGATTGGTTGCACTAGCCATA-GGCCAGATGCTGTC-AGTAGGCCAGCATCTCGATGGTGT
193 ACA-CAATTGGCTGCACCAGCCA-AGGGCTAGATGCTATCGA-TGGGCCAGCATCCCGATGGTGT
* * * * *
15243471 -TCGAGGTAACATCTCAGGGTAATAATGGGCTAGA-ATCTACCATC
255 CT-AAGGTAACATCTTAGGGCAACAATGGGCCA-ACATCTACCATC
*
15243515 GATGGTGGTGGATACGATTGGTTGCACCAGCCAAGGACCAAAGAGGTGTTCGAGGGATCAAGCAT
1 GATGGTGGTGGATACGATTGGTCGCACCAGCCAAGGACCAAAGAGGTGTTCGAGGGATCAAGCAT
* * * ** * *
15243580 CGA-GCACCCACCAAGGAGGAGTTTGAGGCAACTTCGGGCATTGAAAGGG-TCAACACCCACCAA
66 CTAGGCACCCACCAAGGAGGAGCTTGAGGCAACATCGGGCACCGAAAGGGCT-AGCACCCATCAA
* * * * *
15243643 TGAGGTGTTTGAGGCAACATCCCAGGCCAACATTGGGCTGGCATATGCCGTCGATGGTGTTGGAC
130 AGAGGTGTTTGAGGCAACATCCCAGGGCAACAATGGGCTAGCATTTGCCGTCGATGGTGTTGGAC
** * * * ** *
15243708 ACAATTGGCCACACCAACTAAGGGCTGGATGCTATCGATAAGCCAGTATCCCGATGGTGTCTAAG
195 ACAATTGGCTGCACCAGCCAAGGGCTAGATGCTATCGATGGGCCAGCATCCCGATGGTGTCTAAG
* ** * *
15243773 GCAACATCCCAAGGCAACAATGGGCCAACATCTACCATT
260 GTAACATCTTAGGGCAACAATGGGCCAACATCTACCATC
** * *** * * * *
15243812 GATGGTTATGGATATGATTAACCAG-ACCAACGAAAGACCAAAGAGGTGTT-TAGGGGATCAAGC
1 GATGGTGGTGGATACGATTGGTC-GCACCAGCCAAGGACCAAAGAGGTGTTCGA-GGGATCAAGC
* * *
15243875 -GCCAGGCACCCACCAAGGAGGAGCTTAAGGCAACATCGGGCACCGAAA-GGCTAGCACCCATCA
64 ATCTAGGCACCCACCAAGGAGGAGCTTGAGGCAACATCGGGCACCGAAAGGGCTAGCACCCATCA
* * * * * * * * ** * * *
15243938 GAGAGGTGTTTGAAGCTATATCTCAGGGCAACAACGAGCTAGCATCTATCATCGATTGTGTTGCA
129 AAGAGGTGTTTGAGGCAACATCCCAGGGCAACAATGGGCTAGCATTTGCCGTCGATGGTGTTGGA
* ** * * ** * * *
15244003 -AGCGATTGGCCACACCAGTCAAGGGCCAGACACTGTTGATGGGCCAGCATCCCAATGGTGTCTA
194 CA-CAATTGGCTGCACCAGCCAAGGGCTAGATGCTATCGATGGGCCAGCATCCCGATGGTGTCTA
* * **
15244067 AGGTAACATCCTAGGGTAACAACAGGCCAACATCTA-C-TGC
258 AGGTAACATCTTAGGGCAACAATGGGCCAACATCTACCAT-C
* * * * * * * * *
15244107 TAATGGTGGTGGACACGATTGGTTGCACCAGCCAAAGACCCAAGTGGTGTTCAAGGAATGAAGC-
1 -GATGGTGGTGGATACGATTGGTCGCACCAGCCAAGGACCAAAGAGGTGTTCGAGGGATCAAGCA
* *** * * * * *
15244171 GCTAGGCACTTGCCAAGGAGAAGCTTAAGGCAACATCAAGG-ACTG-AAGGG-TCAACACCCATC
65 TCTAGGCACCCACCAAGGAGGAGCTTGAGGCAACATC-GGGCACCGAAAGGGCT-AGCACCCATC
* ** ** * **
15244233 AAGAAAGAGT-CAT-AGGCAACATCCCAGGGTGACAATGGGCCAGC-TTCTGCTAT-GATGGTGT
128 AA-AGAG-GTGTTTGAGGCAACATCCCAGGGCAACAATGGGCTAGCATT-TGCCGTCGATGGTGT
** * * * * * * *
15244294 TGGATGCGATTGG-TCGTACCAGCCAAGGGCCAGACGTTATCGATGGGCTAGCATCCTGATGGTG
190 TGGACACAATTGGCT-GCACCAGCCAAGGGCTAGATGCTATCGATGGGCCAGCATCCCGATGGTG
* * *
15244358 TCTAAGGTAACA--AT-GGGCCAAC-ATTGG----C--C--GC-T-
254 TCTAAGGTAACATCTTAGGG-CAACAATGGGCCAACATCTACCATC
* * * * *
15244390 GATGGTGGTGGACATGATTGGTCGCACTAGCCAAGGACCAAAGGGGTGTT-GAAGGGATCAA-AA
1 GATGGTGGTGGATACGATTGGTCGCACCAGCCAAGGACCAAAGAGGTGTTCG-AGGGATCAAGCA
* * * *** * * * * * *** *
15244453 ACCAGACACCTGTCAAAGAGGAGCTCGAGGTAACATCAGGCACCG-TAGGGCTAGCACCTGCCAG
65 TCTAGGCACCCACCAAGGAGGAGCTTGAGGCAACATCGGGCACCGAAAGGGCTAGCACCCATCAA
* * * * * *** * ** *
15244517 AGAGGTGTCTAAGGGAACATCCCAGAGTAACAACATGCCAGCATTTATCGTTGATGGTGTTGGAC
130 AGAGGTGTTTGAGGCAACATCCCAGGGCAACAATGGGCTAGCATTTGCCGTCGATGGTGTTGGAC
* * * * * *
15244582 ACAATTGGTTGCACCAGCCAAAGGG-TAGATGTTGTCGATGGGCCAGCATCTCGATGGTGTCCAG
195 ACAATTGGCTGCACCAGCC-AAGGGCTAGATGCTATCGATGGGCCAGCATCCCGATGGTGTCTAA
* * * *
15244646 GGTAACATCTTAGGGAAACAATGGCCCAACATCTGCCACC
259 GGTAACATCTTAGGGCAACAATGGGCCAACATCTACCATC
* ** * * * *
15244686 GATGGTGATGGATGTGATTAGCCACACCAACCAAGGACCAAAGAGGTGTTCGAGGGATCAAGCA-
1 GATGGTGGTGGATACGATTGGTCGCACCAGCCAAGGACCAAAGAGGTGTTCGAGGGATCAAGCAT
* * * * * * * * * *
15244750 CTAGGCAGCCTCCAAAGAGGAGCTTGAGACAGCATTGAGCACC-AAGGGGCTAGCACCTATCAAG
66 CTAGGCACCCACCAAGGAGGAGCTTGAGGCAACATCGGGCACCGAAAGGGCTAGCACCCATCAAA
* * * * * * * *
15244814 GAGGTGTCTGAGGTAATAT-CCTGGTGCAACAATGGGCCAGCATTTGCTGCCAATGGTGTTGGA-
131 GAGGTGTTTGAGGCAACATCCCAGG-GCAACAATGGGCTAGCATTTGCCGTCGATGGTGTTGGAC
** * * * * *
15244877 AGTGATTGGTTGCACCAGCCATGGTCCAGATGCTATC-AGTAGGCCAGCATCCCGATGGTGT-TC
195 A-CAATTGGCTGCACCAGCCAAGGGCTAGATGCTATCGA-TGGGCCAGCATCCCGATGGTGTCT-
* * * *
15244940 GAGGTAACATCTTGGGGTAACAATGGGCCAGCATCTACCATC
257 AAGGTAACATCTTAGGGCAACAATGGGCCAACATCTACCATC
* * * * * * *
15244982 GATGGAGGTGGATGCGATTGGTTGCACCAACCAAAGACCAAAGAGGTGTTCAAGGGATGAAGCAT
1 GATGGTGGTGGATACGATTGGTCGCACCAGCCAAGGACCAAAGAGGTGTTCGAGGGATCAAGCAT
* * * * ** * * *
15245047 CGA-GCACCCGCCAAGGAAGAGCTTGAGGTAAC-TGCGGGCATTGAAAAGGCCAACACCCA-CTA
66 CTAGGCACCCACCAAGGAGGAGCTTGAGGCAACAT-CGGGCACCGAAAGGGCTAGCACCCATC-A
* ** * *
15245109 AAGAGGTGTTTGAGGCAACATCCCA-AGCTAACAATGGGCTAGCATAGGTCATCGATGGTGTTGG
129 AAGAGGTGTTTGAGGCAACATCCCAGGGC-AACAATGGGCTAGCATTTGCCGTCGATGGTGTTGG
* * * * * * * *
15245173 ACGCAATTGACCGCACCAACTAAGGG-TCGGATGCTATCGATAGGCCAGCATCCTGATGGTGTCT
193 ACACAATTGGCTGCACCAGCCAAGGGCT-AGATGCTATCGATGGGCCAGCATCCCGATGGTGTCT
* * ** * * *
15245237 GAGGCAACATCTTAAAGCAACAATGGGCCAGCATC-AGCAGC
257 AAGGTAACATCTTAGGGCAACAATGGGCCAACATCTACCATC
* * ** * * * * **
15245278 AGATGGTGTTAGATGTGATTAG-CTACACCAGCTAGGGACCAAAGAGGTGTTTAAGGGATCAAGC
1 -GATGGTGGTGGATACGATTGGTC-GCACCAGCCAAGGACCAAAGAGGTGTTCGAGGGATCAAGC
* * ** * * *
15245342 A-CTAGGCACCCACTAAGGAGGAGCTTGAGGTAACATCGGGCATTG-AGGGGCCAGCACCCA-CT
64 ATCTAGGCACCCACCAAGGAGGAGCTTGAGGCAACATCGGGCACCGAAAGGGCTAGCACCCATCA
* * * ** * * * ** * *
15245404 AGGAAGGTGTCTT-AGGCAACATCCCTGGGTAACAACAGGCTAGCGTCTACCACCAATAGTGTTG
129 AAG-AGGTGT-TTGAGGCAACATCCCAGGGCAACAATGGGCTAGCATTTGCCGTCGATGGTGTTG
** * * * * * *** *** * * * *
15245468 GACATGATTTGTTACACCAGCCAAAGGCCAGACATTATCGACAAGCTAGCATCTCAATGGTGTTT
192 GACACAATTGGCTGCACCAGCCAAGGGCTAGATGCTATCGATGGGCCAGCATCCCGATGGTGTCT
* * * * *
15245533 GAGGTAACATCCTAGGGCAACAAT-GGCTCAGCATCTATCGTC
257 AAGGTAACATCTTAGGGCAACAATGGGC-CAACATCTACCATC
* *** *
15245575 GATAGTGGTGGACGGGATTGG-C-CACGCTAGCCAAAGACCAAAGAGGTGTTC-AGAGGATCAAG
1 GATGGTGGTGGATACGATTGGTCGCAC-C-AGCCAAGGACCAAAGAGGTGTTCGAG-GGATCAAG
*
15245637 C-GCTAGGCACC
63 CATCTAGGCACC
15245648 TTCTTTGGAA
Statistics
Matches: 2989, Mismatches: 739, Indels: 344
0.73 0.18 0.08
Matches are distributed among these distances:
280 2 0.00
281 7 0.00
282 118 0.04
283 79 0.03
284 23 0.01
285 139 0.05
286 61 0.02
288 1 0.00
290 2 0.00
292 8 0.00
293 4 0.00
294 6 0.00
295 111 0.04
296 1537 0.51
297 840 0.28
298 41 0.01
299 10 0.00
ACGTcount: A:0.29, C:0.23, G:0.28, T:0.19
Consensus pattern (298 bp):
GATGGTGGTGGATACGATTGGTCGCACCAGCCAAGGACCAAAGAGGTGTTCGAGGGATCAAGCAT
CTAGGCACCCACCAAGGAGGAGCTTGAGGCAACATCGGGCACCGAAAGGGCTAGCACCCATCAAA
GAGGTGTTTGAGGCAACATCCCAGGGCAACAATGGGCTAGCATTTGCCGTCGATGGTGTTGGACA
CAATTGGCTGCACCAGCCAAGGGCTAGATGCTATCGATGGGCCAGCATCCCGATGGTGTCTAAGG
TAACATCTTAGGGCAACAATGGGCCAACATCTACCATC
Found at i:15245855 original size:179 final size:179
Alignment explanation
Indices: 15245533--15245859 Score: 390
Period size: 179 Copynumber: 1.8 Consensus size: 179
15245523 AATGGTGTTT
* * * * *
15245533 GAGGTAACATCCTAGGGCAACAATGGCTCAGCATCTATCGTCGATAGTGGTGGACGGGATTGGCC
1 GAGGTAACATCCGAGGGCAACAATGGCTCAGCATCTACCATCGATAGTGGCGGACAGGATTGGCC
* * * ** **
15245598 ACGCTAGCCAAAGACCAAAGAGGTGTTCAGAGGATCAAGCGCTAGGCACCTTCTTTGGAAGAGCT
66 ACACTAGCCAAAGACCAAAGAGATGTTCAGAGGATCAAGCGCCAGGCACCCGCTCAGGAAGAGCT
*
15245663 CAAGGCCACATCAGGCACTGAGGTGCCAGCTTCCACTAGAGAGCTGTCA
131 CAAGGCAACATCAGGCACTGAGGTGCCAGCTTCCACTAGAGAGCTGTCA
* * *
15245712 GAGGTAACATCTCGA-GGCAGCAATAGGCT-AGCATCTACCATCGATGGTGGCGGACATGATTGG
1 GAGGTAACATC-CGAGGGCAACAAT-GGCTCAGCATCTACCATCGATAGTGGCGGACAGGATTGG
* * * * * * *
15245775 CTACACTAGCCAAGGACTAAAGAGATGTTTAGGGGATCAAGCTCCAGGCACCCGC-CAGAGAGGA
64 CCACACTAGCCAAAGACCAAAGAGATGTTCAGAGGATCAAGCGCCAGGCACCCGCTCAG-GAAGA
*
15245839 GCTTAAGGCAACATCAGGCAC
128 GCTCAAGGCAACATCAGGCAC
15245860 CAAGGGGCTA
Statistics
Matches: 121, Mismatches: 24, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
178 1 0.01
179 114 0.94
180 6 0.05
ACGTcount: A:0.29, C:0.24, G:0.29, T:0.18
Consensus pattern (179 bp):
GAGGTAACATCCGAGGGCAACAATGGCTCAGCATCTACCATCGATAGTGGCGGACAGGATTGGCC
ACACTAGCCAAAGACCAAAGAGATGTTCAGAGGATCAAGCGCCAGGCACCCGCTCAGGAAGAGCT
CAAGGCAACATCAGGCACTGAGGTGCCAGCTTCCACTAGAGAGCTGTCA
Found at i:15248447 original size:296 final size:293
Alignment explanation
Indices: 15247741--15248447 Score: 685
Period size: 296 Copynumber: 2.4 Consensus size: 293
15247731 GTGGAGAACA
* * * *
15247741 TGATTGGCCACACCAGCTAAGGACCAAAGAGGTGTTTGAGGGATCAAGCTCTAGGCACCCACCAA
1 TGATT-GCCACACCAGCTAAGGACCAAAGAGGTGTTCGGGGGTTCAAGCACTAGGCA-CCACCAA
* * *
15247806 -CAAAGAGCTTGAGGCAATATCGAGCATCGAAGGGCTAG----CA-CAAGAGGTGTTTGAGGCAA
64 GGAAA-AGCTAGAGGCAATATCGAGCATCGAAGGGCCAGAACCCACCAAGAGGTGTTTGAGGCAA
* * ** * *
15247865 CATCCTAGGGCAATAATGGGCCAACATATACTATCGATGGTGTTGGACATGATTGGTCGCACTAG
128 CATCCTAAGGCAACAATGGGCCAACATATACTATCGACAGTGTTGGACATGATTGCTCGCACCAG
* * * *
15247930 CTAAGGGCCAAACGCTATTGATGGGCTAGTCTCTCAATGGTGTCCAAGGTAACCACTTAAGGTAA
193 CCAAGGGCCAAACGATATTGATAGGCCAGTCTCTCAATGGTGTCCAAGGTAACCACTTAAGGTAA
* **
15247995 CAACGGGACAGAATCTACCATTAATGGTGGTGGATG
258 CAACGAGACAGAATCTACCACCAATGGTGGTGGATG
* * * * * *
15248031 CGATTGACCACACCAGCTAAGGACCAAAGAGGTGTTCCAGTGATT-AAGCACCAGGCATGCACCA
1 TGATTG-CCACACCAGCTAAGGACCAAAGAGGTGTT-CGGGGGTTCAAGCACTAGGCA-CCACCA
* * * * *
15248095 AGGAAGAGCTAGAGGTAATATCAAGCA-CTGAGGGGCCA-ACACCAACCAATGAGGTGTTTGAGG
63 AGGAAAAGCTAGAGGCAATATCGAGCATC-GAAGGGCCAGA-ACCCACCAA-GAGGTGTTTGAGG
* * *
15248158 CAACAT-CTCAAGGCAACAATGGGCCAACATCTGGC-A-CTGACAGTGTTGGACTTGATTAGCT-
125 CAACATCCT-AAGGCAACAATGGGCCAACATAT-ACTATC-GACAGTGTTGGACATGATT-GCTC
* *
15248219 GCACCAGCCAATGGCCAAAC-ATAATTGATAGGCCAG-CATC-CTGATGGTGTCCAAGGTAA-CA
186 GCACCAGCCAAGGGCCAAACGAT-ATTGATAGGCCAGTC-TCTC-AATGGTGTCCAAGGTAACCA
* * * *
15248280 TCTTAGGGTAACAACTAGCCA-ACATCTACTACCAATGGTGGTGGATG
248 -CTTAAGGTAACAACGAGACAGA-ATCTACCACCAATGGTGGTGGATG
* * *
15248327 TGATTAGCCACACTAGTTAAAGACCAAAGAGGTGTTCGGGGGTTCAAGCACTAGGCACCTACCAA
1 TGATT-GCCACACCAGCTAAGGACCAAAGAGGTGTTCGGGGGTTCAAGCACTAGGCACC-ACCAA
* * *
15248392 GGAAAAGCTCGAGGCAACATCGGGCATCGAAGGGCCAGAACCCACCAAGGAGGTGT
64 GGAAAAGCTAGAGGCAATATCGAGCATCGAAGGGCCAGAACCCACCAA-GAGGTGT
15248448 CAAGGTAGCT
Statistics
Matches: 333, Mismatches: 59, Indels: 44
0.76 0.14 0.10
Matches are distributed among these distances:
289 2 0.01
290 74 0.22
291 4 0.01
294 1 0.00
295 18 0.05
296 228 0.68
297 6 0.02
ACGTcount: A:0.31, C:0.22, G:0.27, T:0.19
Consensus pattern (293 bp):
TGATTGCCACACCAGCTAAGGACCAAAGAGGTGTTCGGGGGTTCAAGCACTAGGCACCACCAAGG
AAAAGCTAGAGGCAATATCGAGCATCGAAGGGCCAGAACCCACCAAGAGGTGTTTGAGGCAACAT
CCTAAGGCAACAATGGGCCAACATATACTATCGACAGTGTTGGACATGATTGCTCGCACCAGCCA
AGGGCCAAACGATATTGATAGGCCAGTCTCTCAATGGTGTCCAAGGTAACCACTTAAGGTAACAA
CGAGACAGAATCTACCACCAATGGTGGTGGATG
Found at i:15256353 original size:295 final size:295
Alignment explanation
Indices: 15255798--15256488 Score: 674
Period size: 295 Copynumber: 2.3 Consensus size: 295
15255788 GTTTGCATCT
* * * * * *
15255798 GCCAAGGGCCATACACTATCGATGGGCCAACATCCTGATGGTGTCTGAGGTAACATCCCAGGGCA
1 GCCAAGGGCCAGACACTATTGATGGGCTAGCATCCTGATGGTGTCTGAAGCAACATCCCAGGGCA
* * * * * *
15255863 ACAACGAGCTAGCATCTACCATCGATGGTGGTGGATGTGATTGGTTGGACCAGCCAAGGACCAAA
66 ACAACGAGCTAGCATCTACCATCAATGGTAGTGGATGTGATTAGCTGCACCAGCCAAAGACCAAA
* * *
15255928 GAGGTGTTTAGTGGATCAAGCGCCAGTCACCCACCAAGGAGAAGCTCGAGGCAACATCAGGCATC
131 GAGATGTTGAGTGGATCAAGCGCCAGGCACCCACCAAGGAGAAGCTCGAGGCAACATCAGGCATC
* ** * *
15255993 GAGGGACTGGCACCCATCAAAAGGGCATTTGAGGTAACATCCCAAAGCAATATCAGGCCAGCATC
196 AAGGGACTAACACCCATCAAAAGGG-ATTTGAGGCAACATCCCAAAGCAATAACAGGCCAGCATC
* *
15256058 TACCA-CGAA-TGATGTTAGACGT-GATTGGCAACCCTA
260 TACCATC-AATTG-TGCTAGAC-TCGATTGGCAACACTA
* ** *
15256094 GCCAAGGGCTAGACACTATTGATGGGCTAGCATCCTGATGGTGTCTGAAGCAACATCCTGGGGTA
1 GCCAAGGGCCAGACACTATTGATGGGCTAGCATCCTGATGGTGTCTGAAGCAACATCCCAGGGCA
* *
15256159 ACAAC-AGGCTATCATC-A-C-TGCTAATGGTAGTGGATGTGATTAGCTGCACCGGCCAAAGACC
66 ACAACGA-GCTAGCATCTACCAT-C-AATGGTAGTGGATGTGATTAGCTGCACCAGCCAAAGACC
* * * *
15256220 AAAGAGATGTTCGAG-GGATCAAGCGCTAGGCACCCACCAAGGA-AGAGCTTGAGGCAATATCGG
128 AAAGAGATGTT-GAGTGGATCAAGCGCCAGGCACCCACCAAGGAGA-AGCTCGAGGCAACATCAG
* * * * * ** *
15256283 GCATTAAGGGGCTAACACCCA-CTAGGAAGGTG-TTTGAGGCAATATCCTAGGGCAATAACGGGC
191 GCATCAAGGGACTAACACCCATC-A-AAAGG-GATTTGAGGCAACATCCCAAAGCAATAACAGGC
* **
15256346 CAGCATCTATCATCAATTGTGCTAGACTCGATTGGCTGCACTA
253 CAGCATCTACCATCAATTGTGCTAGACTCGATTGGCAACACTA
*** * * * *
15256389 GCCAAGGGCCAGGTGCTATTGATAGGCTAGCAT-CTCAATGGTGTTTGATGCAACATCCC-GAGG
1 GCCAAGGGCCAGACACTATTGATGGGCTAGCATCCT-GATGGTGTCTGAAGCAACATCCCAG-GG
* * *
15256452 CAACAATG-GC-AGCATCTACCATTAATGGTGGTGGATG
64 CAACAACGAGCTAGCATCTACCATCAATGGTAGTGGATG
15256489 CGATCAAGGA
Statistics
Matches: 321, Mismatches: 57, Indels: 36
0.78 0.14 0.09
Matches are distributed among these distances:
293 6 0.02
294 24 0.07
295 212 0.66
296 78 0.24
297 1 0.00
ACGTcount: A:0.29, C:0.23, G:0.28, T:0.20
Consensus pattern (295 bp):
GCCAAGGGCCAGACACTATTGATGGGCTAGCATCCTGATGGTGTCTGAAGCAACATCCCAGGGCA
ACAACGAGCTAGCATCTACCATCAATGGTAGTGGATGTGATTAGCTGCACCAGCCAAAGACCAAA
GAGATGTTGAGTGGATCAAGCGCCAGGCACCCACCAAGGAGAAGCTCGAGGCAACATCAGGCATC
AAGGGACTAACACCCATCAAAAGGGATTTGAGGCAACATCCCAAAGCAATAACAGGCCAGCATCT
ACCATCAATTGTGCTAGACTCGATTGGCAACACTA
Found at i:15256734 original size:281 final size:282
Alignment explanation
Indices: 15256234--15256763 Score: 658
Period size: 281 Copynumber: 1.9 Consensus size: 282
15256224 AGATGTTCGA
* * * * *
15256234 GGGATCAAGCGCTAGGCACCCACCAAGGAAGAGCTTGAGGCAATATCGGGCATTAAGGGGCTAAC
1 GGGATCAAACGCTAGGCACCCACCAAGGAAGAGCTCGAGGCAACATCAGGCACTAAGGGGCTAAC
* * * * *
15256299 ACCCACTAGGAAGGTGTTTGAGGCAATATCCTAGGGCAATAACGGGCCAGCATCTATCATCAATT
66 ACCCACCAGGAAGGTGTTTGAGGCAACATCCTAGGGCAACAACGGGCCAACATCTATCA-CAATG
* ** * ** * *
15256364 GTGCTAGACTCGATTGGCTGCACTAGCCAAGGGCCAGGTGCTATTGATAGGCTAGCATCTCAATG
130 GTGCTAGACTCAATTGGCCACACTAGCAAAGGGCCAGACGCTATTGATAGGCCAGCATCCCAATG
* *
15256429 GTGTTTGATGCAACATCCCGAGGCAACAATG-G-CAGCATCTACCATTAATGGTGGTGGATGCGA
195 GTGTCTAATGCAACATCCCGAGGCAACAATGAGCCAGCATCTACCATTAATGGTGGTGGATGCGA
15256492 TCAAGGACCAAAGAGGCATTCAG
260 TCAAGGACCAAAGAGGCATTCAG
* * *
15256515 GGGATCAAACGCTAGGCACCCACCAAGGAAGAGCTCGAGGCAACATTAGGCACTGAGGGGCTAGC
1 GGGATCAAACGCTAGGCACCCACCAAGGAAGAGCTCGAGGCAACATCAGGCACTAAGGGGCTAAC
* * *
15256580 ACTCACCATGG-AGGTGTTTGAGGCAACATCCT-GTGGCAACAATGGGCCAACATCTACTGC-CG
66 ACCCACCA-GGAAGGTGTTTGAGGCAACATCCTAG-GGCAACAACGGGCCAACATCTA-T-CACA
* * * *
15256642 ATGGTGTTGGA-TGCAATTGGCCACACTAGCAAAGGGCGAGACGCTATTGATGGGCCAGCATCCC
127 ATGGTGCTAGACT-CAATTGGCCACACTAGCAAAGGGCCAGACGCTATTGATAGGCCAGCATCCC
* * * *
15256706 AATGGTGTCTAATGCAATATCTCGAGGCAACAGTGAGCCAGCATCTACCATTGATGGT
191 AATGGTGTCTAATGCAACATCCCGAGGCAACAATGAGCCAGCATCTACCATTAATGGT
15256764 TATGGATACG
Statistics
Matches: 208, Mismatches: 34, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
280 2 0.01
281 182 0.88
282 4 0.02
283 20 0.10
ACGTcount: A:0.28, C:0.23, G:0.28, T:0.20
Consensus pattern (282 bp):
GGGATCAAACGCTAGGCACCCACCAAGGAAGAGCTCGAGGCAACATCAGGCACTAAGGGGCTAAC
ACCCACCAGGAAGGTGTTTGAGGCAACATCCTAGGGCAACAACGGGCCAACATCTATCACAATGG
TGCTAGACTCAATTGGCCACACTAGCAAAGGGCCAGACGCTATTGATAGGCCAGCATCCCAATGG
TGTCTAATGCAACATCCCGAGGCAACAATGAGCCAGCATCTACCATTAATGGTGGTGGATGCGAT
CAAGGACCAAAGAGGCATTCAG
Found at i:15263524 original size:296 final size:296
Alignment explanation
Indices: 15263139--15263808 Score: 678
Period size: 296 Copynumber: 2.3 Consensus size: 296
15263129 TGATTGGCTG
* *** * * * *
15263139 CACCAGCCAAGGACCAA-AGAGGTGCTTGGGGGATCAAGCGCTAGGCACCTACCAAGGATGAACT
1 CACCAGCCAAGGATCAACA-AGGTGCTCAAGGGATCAAGCGCTGGGCACCCACCAAGGAAGAGCT
* * * *
15263203 CGAGGCAACAACAGGCATCGAAGGGCTAGCACCCACTAGGTAGGTGTAC-AAGGCAACATCTTAG
65 CGAGGCAACATCAGGCATCGAAGGGCCAGCACCCACCAAGTAGGTGT-CTAAGGCAACATC-TAG
** ** * * ** * * *
15263267 -GGCAACAATGGGCTAGTATCTA-CTGTCAATGGTGTTAGACT-TGATTGG-C-TACACTAGCTA
128 TCACAACAACAGGCCAGCATCTATC-ACCAATGGTGTTAGA-TACGATTGGCCATAC-CAAAC-A
*** * * * * *
15263327 AGGGCCAGGTGCTGTC-ACTAGGCTAGCATCTTGATGGTGTCTGAGGTAACATC-TTGATGCAAC
189 AGGGCCAGACACTATCGA-TAGGCCAGCATCCTAATGGTGTCTGAGGTAACATCTTTG-GGCAAC
* * *
15263390 AATGGGCCAGCATCTACCTCTAATGGTGGTGGATGCGATTGGTTA
252 AATGGGCCAGCATCTACCACTAATGGTGGTGGACGCGATTGGTCA
* * * * * *
15263435 CACTAGGCAATGATCAA-AGAGGTGTTCAAGGGATCAAGTGCTGGGCACCCACCAAGGAGGAGCT
1 CACCAGCCAAGGATCAACA-AGGTGCTCAAGGGATCAAGCGCTGGGCACCCACCAAGGAAGAGCT
* ** * * *
15263499 CCAGGCAACATTGGGCA-CTGAAGGGCCAGCACCTACCAAGTAGGTGTCTGAGGCAACATCTCGT
65 CGAGGCAACATCAGGCATC-GAAGGGCCAGCACCCACCAAGTAGGTGTCTAAGGCAACATCTAGT
15263563 CACAACAACAGGCCAGCATCTATCACCAATGGTGTTAGATACGATTGGCCATACCAAACAAGGGC
129 CACAACAACAGGCCAGCATCTATCACCAATGGTGTTAGATACGATTGGCCATACCAAACAAGGGC
* *
15263628 CAGACACTATCGATGGGCCAGCATCCTAATGGTGTTTGAGGTAACATCTTTGGGCAACAATGGGC
194 CAGACACTATCGATAGGCCAGCATCCTAATGGTGTCTGAGGTAACATCTTTGGGCAACAATGGGC
*
15263693 CAGCATCTACCACTGATGGTGGTGGACGCGATTGGTCA
259 CAGCATCTACCACTAATGGTGGTGGACGCGATTGGTCA
* * * *
15263731 TACCAGCCAAGGATCAACAAGGTGCTCAAGGGATCAAGCGCTAGGCCACCCGCCAAGGAAAAGCT
1 CACCAGCCAAGGATCAACAAGGTGCTCAAGGGATCAAGCGCT-GGGCACCCACCAAGGAAGAGCT
15263796 CGAGGCAACATCA
65 CGAGGCAACATCA
15263809 AGCAATGAGG
Statistics
Matches: 302, Mismatches: 61, Indels: 21
0.79 0.16 0.05
Matches are distributed among these distances:
295 5 0.02
296 256 0.85
297 38 0.13
298 3 0.01
ACGTcount: A:0.29, C:0.24, G:0.28, T:0.19
Consensus pattern (296 bp):
CACCAGCCAAGGATCAACAAGGTGCTCAAGGGATCAAGCGCTGGGCACCCACCAAGGAAGAGCTC
GAGGCAACATCAGGCATCGAAGGGCCAGCACCCACCAAGTAGGTGTCTAAGGCAACATCTAGTCA
CAACAACAGGCCAGCATCTATCACCAATGGTGTTAGATACGATTGGCCATACCAAACAAGGGCCA
GACACTATCGATAGGCCAGCATCCTAATGGTGTCTGAGGTAACATCTTTGGGCAACAATGGGCCA
GCATCTACCACTAATGGTGGTGGACGCGATTGGTCA
Found at i:15263959 original size:297 final size:295
Alignment explanation
Indices: 15263351--15263984 Score: 677
Period size: 297 Copynumber: 2.1 Consensus size: 295
15263341 TCACTAGGCT
* * * *
15263351 AGCATCTTGATGGTGTCTGAGGTAACATCTTGATGCAACAATGGGCCAGCATCTACCTCTAATGG
1 AGCATCTCGATGGTGTTTGAGGTAACATCTTG-GGCAACAATGGGCCAGCATCTACCACTAATGG
* * * * * * * *
15263416 TGGTGGATGCGATTGGTTACACTAGGCAATGATCAAAGAGGTGTTCAAGGGATCAAGTGCTGGGC
65 TGGTGGACGCGATTGGTCACACCAGCCAAGGATCAAAGAGGTGCTCAAGGGATCAAGCGCTGGCC
** *** * * *
15263481 ACCCACCAAGGAGGAGCTCCAGGCAACATTGGGCACTGAAGGGCCAGCACCTACCAAGTAGGTGT
130 ACCCACCAAGGAAAAGCTCCAGGCAACATCAAGCAATGAAGGGCCAGCACCCACCAAGGAGGTGT
* ** * **
15263546 CTGAGGCAACATCTCGTCACAACAACAGGCCAGCATCTATCACCAATGGTGTTAGATACGATTGG
195 CTAAGGCAACATCTCGGAACAACAACAGGCCAGCACCTATCACCAACAGTGTTAGATACGATTGG
* *
15263611 CCATACCAAACAAGGGCCAGACACTATCGATGGGCC
260 CCACACCAAACAAGGGCCAGACACTATCGATGAGCC
* *
15263647 AGCATC-CTAATGGTGTTTGAGGTAACATCTTTGGGCAACAATGGGCCAGCATCTACCACTGATG
1 AGCATCTC-GATGGTGTTTGAGGTAACATC-TTGGGCAACAATGGGCCAGCATCTACCACTAATG
*
15263711 GTGGTGGACGCGATTGGTCATACCAGCCAAGGATCAACA-AGGTGCTCAAGGGATCAAGCGCTAG
64 GTGGTGGACGCGATTGGTCACACCAGCCAAGGATCAA-AGAGGTGCTCAAGGGATCAAGCGCT-G
* * * ** * *
15263775 GCCACCCGCCAAGGAAAAGCTCGAGGCAACATCAAGCAATG-AGGTGCCCGCACCCGTCAGGGAT
127 GCCACCCACCAAGGAAAAGCTCCAGGCAACATCAAGCAATGAAGG-GCCAGCACCCACCAAGGAG
* * ** * **
15263839 GTGTCTAAGGCAACATC-CTGGAACAATAACAGGCTAGCACCTA-CTGTCAACAGTGTTGGATGT
191 GTGTCTAAGGCAACATCTC-GGAACAACAACAGGCCAGCACCTATC-ACCAACAGTGTTAGATAC
* ***
15263902 GATTGTCCACA-CTGGCTAAGGGCCAGACACTATCGATGAGCC
254 GATTGGCCACACCAAAC-AAGGGCCAGACACTATCGATGAGCC
* *
15263944 AGCATCTCGATGGTGTTTGAGGCAACATCCTAGGGCAACAA
1 AGCATCTCGATGGTGTTTGAGGTAACAT-CTTGGGCAACAA
15263985 CGAGCCAACA
Statistics
Matches: 276, Mismatches: 52, Indels: 19
0.80 0.15 0.05
Matches are distributed among these distances:
296 112 0.41
297 162 0.59
298 2 0.01
ACGTcount: A:0.29, C:0.24, G:0.27, T:0.20
Consensus pattern (295 bp):
AGCATCTCGATGGTGTTTGAGGTAACATCTTGGGCAACAATGGGCCAGCATCTACCACTAATGGT
GGTGGACGCGATTGGTCACACCAGCCAAGGATCAAAGAGGTGCTCAAGGGATCAAGCGCTGGCCA
CCCACCAAGGAAAAGCTCCAGGCAACATCAAGCAATGAAGGGCCAGCACCCACCAAGGAGGTGTC
TAAGGCAACATCTCGGAACAACAACAGGCCAGCACCTATCACCAACAGTGTTAGATACGATTGGC
CACACCAAACAAGGGCCAGACACTATCGATGAGCC
Found at i:15276658 original size:47 final size:47
Alignment explanation
Indices: 15276589--15276693 Score: 201
Period size: 47 Copynumber: 2.2 Consensus size: 47
15276579 NNNNNNNNNT
15276589 GGCCAGCATCTCGATGGTGTCTGAGACAACATTCTGATACAACAATG
1 GGCCAGCATCTCGATGGTGTCTGAGACAACATTCTGATACAACAATG
15276636 GGCCAGCATCTCGATGGTGTCTGAGACAACATTCTGATACAACAATG
1 GGCCAGCATCTCGATGGTGTCTGAGACAACATTCTGATACAACAATG
*
15276683 CGCCAGCATCT
1 GGCCAGCATCT
15276694 TCCATCGATG
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 57 1.00
ACGTcount: A:0.29, C:0.26, G:0.23, T:0.23
Consensus pattern (47 bp):
GGCCAGCATCTCGATGGTGTCTGAGACAACATTCTGATACAACAATG
Found at i:15284874 original size:296 final size:296
Alignment explanation
Indices: 15284311--15284876 Score: 618
Period size: 296 Copynumber: 1.9 Consensus size: 296
15284301 CAATAGGCCA
* * * *
15284311 GCATCCCAATGGTGTCTAAGGCAACATCTCGAGGTAACAATAGGCTAGCATCTACCATCGATTAT
1 GCATCCCAATGGTGTCTAAGGCAACATCTCGAGGCAACAACAGGCCAGCATCTACCATCGATGAT
* * * * * * * *
15284376 GGTGAACGTGATTGGCCCCATCGACCAAAGGACCAAAGAGGTTTTTGGGGGATCAAGCACCAGGG
66 GGTGAACGCGATTGGCCACACCAACCAAAGGACCAAAGAGGTCTTTAGGGGATCAAGCACCAAGC
** * **
15284441 ACCTACCAAGGAAGAGCTTGAGGCAACATCAGGCACTGAGGGGCCAGCTCCTATTAAAGAGGTAT
131 ACCTACCAAGGAAGAGCTCAAGGCAACATCAGGCACTGAGGGGCCAGCACCTACCAAAGAGGTAT
* * **** *
15284506 CTGAAGCAACATCCCAGGGTAACAATAGGCTAGCATCTGCCGTTGATAGTGTTGGACACAATTGG
196 CTGAAGCAACATCCCAGGGCAACAATAGGCCAGCATCTGCCACCAATAGTGTTAGACACAATTGG
*
15284571 TCACACCAGCTTGGGCTAAATGCTATTGACATTCTG
261 CCACACCAGCTTGGGCTAAATGCTATTGACATTCTG
* * * * * *
15284607 GCATCCCGATGGTGTTTGAGGTAACATCTCGAGGCAACAAACAGGCCAGCATCTACTATCGATGG
1 GCATCCCAATGGTGTCTAAGGCAACATCTCGAGGCAAC-AACAGGCCAGCATCTACCATCGATGA
* * * * *
15284672 TGGTGGATGCGATTGGCCATACCAACCACA-GATCAAAGAGGTCTTTAGGGGATCAAGCACCAAG
65 TGGTGAACGCGATTGGCCACACCAACCAAAGGACCAAAGAGGTCTTTAGGGGATCAAGCACCAAG
** * * * **
15284736 CACCTACCAAGGAAGAGCTCAAGGCAACATTGGGC-CTTTAGGGGCCAGCACTTGCCAGGGACGT
130 CACCTACCAAGGAAGAGCTCAAGGCAACATCAGGCAC-TGAGGGGCCAGCACCTACCAAAGA-G-
* * * * * **
15284800 GT-TC-GAGGTAACATTCCAGGGCAACAATGGGCCAGCATCTGCCACCAATGGTGTTAGACATGA
192 GTATCTGAAGCAACATCCCAGGGCAACAATAGGCCAGCATCTGCCACCAATAGTGTTAGACACAA
15284863 TTGGCCACACCAGC
257 TTGGCCACACCAGC
15284877 AATGGGCCAG
Statistics
Matches: 216, Mismatches: 50, Indels: 8
0.79 0.18 0.03
Matches are distributed among these distances:
295 1 0.00
296 167 0.77
297 46 0.21
298 2 0.01
ACGTcount: A:0.29, C:0.24, G:0.27, T:0.20
Consensus pattern (296 bp):
GCATCCCAATGGTGTCTAAGGCAACATCTCGAGGCAACAACAGGCCAGCATCTACCATCGATGAT
GGTGAACGCGATTGGCCACACCAACCAAAGGACCAAAGAGGTCTTTAGGGGATCAAGCACCAAGC
ACCTACCAAGGAAGAGCTCAAGGCAACATCAGGCACTGAGGGGCCAGCACCTACCAAAGAGGTAT
CTGAAGCAACATCCCAGGGCAACAATAGGCCAGCATCTGCCACCAATAGTGTTAGACACAATTGG
CCACACCAGCTTGGGCTAAATGCTATTGACATTCTG
Found at i:15285727 original size:44 final size:45
Alignment explanation
Indices: 15285677--15285764 Score: 117
Period size: 44 Copynumber: 2.0 Consensus size: 45
15285667 GTATGCATGT
*
15285677 GTCGATGGTGGTCCA-AGCAAGTGCCT-TACCAAGGGCCAGCTTGC
1 GTCGATGGTGG-CCATAGCAAGTGCCTGTACCAAAGGCCAGCTTGC
* * *
15285721 GTCGATGGTGGCCATGGCAATTGCTTGTACCAAAGGCCAGCTTG
1 GTCGATGGTGGCCATAGCAAGTGCCTGTACCAAAGGCCAGCTTG
15285765 TGCCAATGAT
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
43 3 0.08
44 19 0.50
45 16 0.42
ACGTcount: A:0.20, C:0.25, G:0.32, T:0.23
Consensus pattern (45 bp):
GTCGATGGTGGCCATAGCAAGTGCCTGTACCAAAGGCCAGCTTGC
Found at i:15290782 original size:45 final size:45
Alignment explanation
Indices: 15290706--15290811 Score: 131
Period size: 45 Copynumber: 2.4 Consensus size: 45
15290696 GAGGCATGCA
* * *
15290706 TATGCCGATGGTAGTCAAGGCAAGTGTCCATACCAAAGGCCAGCT
1 TATGCTGATGGTGGTCAAGGCAAGTGCCCATACCAAAGGCCAGCT
* * * *
15290751 TGTGCTGATGGTGGTCAGGGCAATTGCCCATACCAAAGGCTAGCT
1 TATGCTGATGGTGGTCAAGGCAAGTGCCCATACCAAAGGCCAGCT
* *
15290796 TATGCTAATGATGGTC
1 TATGCTGATGGTGGTC
15290812 GATGCATGTG
Statistics
Matches: 51, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 51 1.00
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (45 bp):
TATGCTGATGGTGGTCAAGGCAAGTGCCCATACCAAAGGCCAGCT
Found at i:15298834 original size:45 final size:45
Alignment explanation
Indices: 15298758--15298844 Score: 122
Period size: 45 Copynumber: 1.9 Consensus size: 45
15298748 GCACATGCCA
* *
15298758 ATGGTGGTTAAGGCAAGTGCCTATACCAAAGGGCAGCTTGTGATG
1 ATGGTGGTCAAGGCAAGTGCCTATACCAAAGGCCAGCTTGTGATG
* *
15298803 ATGGTGGTCAAGGCAATTGTCC-ATACTAAAGGCCAGCTTGTG
1 ATGGTGGTCAAGGCAAGTG-CCTATACCAAAGGCCAGCTTGTG
15298845 CCATTGATGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
45 35 0.95
46 2 0.05
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.25
Consensus pattern (45 bp):
ATGGTGGTCAAGGCAAGTGCCTATACCAAAGGCCAGCTTGTGATG
Found at i:15302389 original size:47 final size:47
Alignment explanation
Indices: 15302315--15302422 Score: 198
Period size: 47 Copynumber: 2.3 Consensus size: 47
15302305 AGATGCTATA
*
15302315 AATGGGCCAGCATCCTAATGGTGTTTGGGGTAACAACCTAGGGCAAC
1 AATGTGCCAGCATCCTAATGGTGTTTGGGGTAACAACCTAGGGCAAC
*
15302362 AATGTGCCAGCATCCTAATGGTGTTTGGGGTAACATCCTAGGGCAAC
1 AATGTGCCAGCATCCTAATGGTGTTTGGGGTAACAACCTAGGGCAAC
15302409 AATGTGCCAGCATC
1 AATGTGCCAGCATC
15302423 TATCATCGAT
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 59 1.00
ACGTcount: A:0.27, C:0.22, G:0.28, T:0.23
Consensus pattern (47 bp):
AATGTGCCAGCATCCTAATGGTGTTTGGGGTAACAACCTAGGGCAAC
Found at i:15304132 original size:45 final size:44
Alignment explanation
Indices: 15304011--15304135 Score: 126
Period size: 45 Copynumber: 2.8 Consensus size: 44
15304001 ATTGAGGCAT
* * *
15304011 GCTTGTGCCGATGGTGGTCGAGGCAAGTGCCCATACCAAGGGCCA
1 GCTTGTGCCTATGGTGGTCGAGGC-AGTGCCCACACCAAAGGCCA
* ** *
15304056 GCTTATG-CTAATGGTGGTTAAGGCAGTTGCCCACACCAAAGGCTA
1 GCTTGTGCCT-ATGGTGGTCGAGGCAG-TGCCCACACCAAAGGCCA
* *
15304101 GCTTGTGCCTATGATGGTCGATGCATGTGCCCACA
1 GCTTGTGCCTATGGTGGTCGAGGCA-GTGCCCACA
15304136 TCGTACTCTA
Statistics
Matches: 64, Mismatches: 12, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
44 3 0.05
45 58 0.91
46 3 0.05
ACGTcount: A:0.22, C:0.25, G:0.30, T:0.23
Consensus pattern (44 bp):
GCTTGTGCCTATGGTGGTCGAGGCAGTGCCCACACCAAAGGCCA
Found at i:15309992 original size:26 final size:27
Alignment explanation
Indices: 15309937--15309995 Score: 84
Period size: 26 Copynumber: 2.2 Consensus size: 27
15309927 AACTCCTCTA
***
15309937 AAAAAATTTTAAAAAATCATGAACTGT
1 AAAAAATTTTAAAAAATCATGAAAAAT
15309964 AAAAAA-TTTAAAAAATCATGAAAAAT
1 AAAAAATTTTAAAAAATCATGAAAAAT
15309990 AAAAAA
1 AAAAAA
15309996 CTAGTCATCT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 23 0.79
27 6 0.21
ACGTcount: A:0.66, C:0.05, G:0.05, T:0.24
Consensus pattern (27 bp):
AAAAAATTTTAAAAAATCATGAAAAAT
Found at i:15316681 original size:117 final size:118
Alignment explanation
Indices: 15316472--15316687 Score: 260
Period size: 117 Copynumber: 1.8 Consensus size: 118
15316462 ACCCACCAAG
* * * * * * *
15316472 ATGGTGTCCAAGGTAACAACCCGAGTCAATAACAGGCCAGCATCTGCCATCATTGGTGTTGGATG
1 ATGGTGTCCAAGGTAACAACCCGAGGCAATAACAGGCCAACATCAGCCACCAATAGTGGTGGATG
*
15316537 TGATTCATCGCACCAGCCAAAGGTCAAAT-GGTGACGATGGGCTAGCATCCCA
66 TAATTCATCGCACCAGCCAAAGGTCAAATAGGTGACGATGGGCTAGCATCCCA
*
15316589 ATGGTGTCCAAGGTAACATCCTCG-GGCAATAA-AGGGCCAACATCAGCCACCAATAGTGGTGGA
1 ATGGTGTCCAAGGTAACAACC-CGAGGCAATAACA-GGCCAACATCAGCCACCAATAGTGGTGGA
** **
15316652 TGTAATTGGTCGCACCAG-TTAAGGATCAAATAGGTG
64 TGTAATTCATCGCACCAGCCAAAGG-TCAAATAGGTG
15316688 TTGAGAGATC
Statistics
Matches: 82, Mismatches: 13, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
116 5 0.06
117 71 0.87
118 6 0.07
ACGTcount: A:0.30, C:0.23, G:0.26, T:0.21
Consensus pattern (118 bp):
ATGGTGTCCAAGGTAACAACCCGAGGCAATAACAGGCCAACATCAGCCACCAATAGTGGTGGATG
TAATTCATCGCACCAGCCAAAGGTCAAATAGGTGACGATGGGCTAGCATCCCA
Found at i:15327938 original size:179 final size:179
Alignment explanation
Indices: 15327664--15328043 Score: 415
Period size: 179 Copynumber: 2.1 Consensus size: 179
15327654 TCTACCACTA
* * *
15327664 ATGGTGGTGAACGTGATTGGCCACACCAATCAAGGACCAAAGAGGTGTTCAAGGGATCAAGTGCT
1 ATGGTGGTGGACGTGATTGGCTACACCAATCAAGGACCAAAGAGGTGTTCAAGGGATCAAGTGCC
** * *
15327729 AGAGACCCAGTAAGGAAGAGCCCGAGGCAACATTCG-GCACCAAGGGGCTAGCACTTGCCAGAGA
66 AGAGACCCACCAAGGAAGAGCCCGAGGCAACA-TCGAGCACCAAGGGACCAGCACTTGCCAGAGA
* * * * * ** *
15327793 GGTGTTCGAGTCAACATCTCAGGGTAACAACAAGCTAGTATCTATTGTTG
130 GGTGTTCGAGGCAACATCTCAAGGCAACAACAAGCCAGCATCTATCATCG
* * ** *
15327843 ATGGTGGTGGAGGTGATTGGCTACACCAATTAAGGACCAAAGAGGTGTT-TGGGGTATTAAGTGC
1 ATGGTGGTGGACGTGATTGGCTACACCAATCAAGGACCAAAGAGGTGTTCAAGGG-ATCAAGTGC
* * *** ** * *
15327907 CA-AGCCCTCACCAAGGATGAGCTTTAGGCAACATCGAGCACTGAGGGACCAGCACTTGCTAGGG
65 CAGAGACC-CACCAAGGAAGAGCCCGAGGCAACATCGAGCACCAAGGGACCAGCACTTGCCAGAG
* *
15327971 AGGTGTTCGAGGCAACATCTTAAGGCAACAACAAGCCAGCATCTGTCATCG
129 AGGTGTTCGAGGCAACATCTCAAGGCAACAACAAGCCAGCATCTATCATCG
* *
15328022 ATGGTGTTGGATGTGATTGGCT
1 ATGGTGGTGGACGTGATTGGCT
15328044 GCACTAGATA
Statistics
Matches: 165, Mismatches: 33, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
178 10 0.06
179 155 0.94
ACGTcount: A:0.29, C:0.20, G:0.30, T:0.21
Consensus pattern (179 bp):
ATGGTGGTGGACGTGATTGGCTACACCAATCAAGGACCAAAGAGGTGTTCAAGGGATCAAGTGCC
AGAGACCCACCAAGGAAGAGCCCGAGGCAACATCGAGCACCAAGGGACCAGCACTTGCCAGAGAG
GTGTTCGAGGCAACATCTCAAGGCAACAACAAGCCAGCATCTATCATCG
Found at i:15330415 original size:179 final size:178
Alignment explanation
Indices: 15330209--15330595 Score: 418
Period size: 179 Copynumber: 2.2 Consensus size: 178
15330199 CCCGCACTAA
* * * ** *
15330209 CCAAGGACCAAAAAGGTGTTTGAGGGATCA-TGCACTAGGCACTTGCTAAAG-AGGAGCTCAAGG
1 CCAATGACCAAAGAGGTGTTCGAGGGATCAGTGC-C-AGGCACCCGC-AAAGAAAGAGCTCAAGG
* *
15330272 TAACATCGGGCACCG-AGAGGCTAGCACCCACCAGAGAGGTGTTCGAAGCAACATC-CTAGGGTA
63 CAACATCGGGCACCGAAG-GGCTAACACCCACCAGAGAGGTGTTCGAAGCAACATCTC-AGGGTA
* * *
15330335 ACAACA-GG-CTAGCATTTGGCG-TCGTTGGTGGTCAACGTGATTAGC-TACACCAG
126 A-AA-ATGGTCCAGCATTTGCCGCT-GTTGGTGGTCAACATGATTAGCAT-CACCAG
*
15330388 CCAAAT-ACCAAAGAGGT-TATCGAGGGATCAAGTGCCAGGCACCCGCCAAGAAAGAGCTCAAGG
1 CC-AATGACCAAAGAGGTGT-TCGAGGGATC-AGTGCCAGGCACCCGCAAAGAAAGAGCTCAAGG
* * * * * *
15330451 CAACATTGGGCATCGAAGGGCTAACACCTACTAGAGAGGTGTTTGAGGCAACATCTCAGGGTAAA
63 CAACATCGGGCACCGAAGGGCTAACACCCACCAGAGAGGTGTTCGAAGCAACATCTCAGGGTAAA
15330516 AATGGTCCAGCATTTGCCGCTGTTGGTGGTCAACATGATTAGCATCACCAG
128 AATGGTCCAGCATTTGCCGCTGTTGGTGGTCAACATGATTAGCATCACCAG
*
15330567 TCAATGACCAAAGAGGTGTTCGA-GGATCA
1 CCAATGACCAAAGAGGTGTTCGAGGGATCA
15330596 AGCGCTAAAC
Statistics
Matches: 176, Mismatches: 19, Indels: 28
0.79 0.09 0.13
Matches are distributed among these distances:
177 2 0.01
178 16 0.09
179 145 0.82
180 10 0.06
181 3 0.02
ACGTcount: A:0.31, C:0.22, G:0.28, T:0.19
Consensus pattern (178 bp):
CCAATGACCAAAGAGGTGTTCGAGGGATCAGTGCCAGGCACCCGCAAAGAAAGAGCTCAAGGCAA
CATCGGGCACCGAAGGGCTAACACCCACCAGAGAGGTGTTCGAAGCAACATCTCAGGGTAAAAAT
GGTCCAGCATTTGCCGCTGTTGGTGGTCAACATGATTAGCATCACCAG
Found at i:15331611 original size:296 final size:295
Alignment explanation
Indices: 15331278--15331833 Score: 635
Period size: 296 Copynumber: 1.9 Consensus size: 295
15331268 CTAGATGCTG
* * *
15331278 TCGATGGGCCAGCATCCCAATGGTGTTTGAGGTAACATCTC-GAGGCAATAACGGGCCAGCCTCT
1 TCGATGGGCCAGCATCCCAATGGTGTTTGAGGTAACATCCCAG-GGCAATAACAGGCCAGCATCT
* ** * *
15331342 GTCA-TCATTGGTAGTGGATGC-C-TTTGGTAGCACCAACCAAGGA-TAAATGTGATATTC-GAG
65 GTCATTCA-TGGT-G-GGAAGCACGAATGGTAGCACCAACCAAGGACCAAA-GAGATATTCAG-G
* * *
15331402 GGATCAAGCACTAGGCATCCATCATGGATGAACTCT-AGGCAACATCAGGCACCGATGGG-CTAG
125 GGATCAAGCACTAGGCATCCATAAAGGAAGAACT-TAAGGCAACATCAGGCACCGA-GGGTCTAG
* * * * * * *
15331465 CATCTGCCATG-GAGGTGTTTGAGGCAACATCTTAGGGCAACAATGGGCTAGCATTTGCCACTGA
188 CACCTACCA-GAAATGTG-TTGAGGCAACATCTTAGGGCAAAAATGGGCTAGCATCTGCCACTAA
15331529 TGGTGTTGGACGTGATTGGCAGTAGTAGATAAAGGTCAAACACTA
251 TGGTGTTGGACGTGATTGGCAGTAGTAGATAAAGGTCAAACACTA
* ** * ** *
15331574 TCGATGGGCTAGCATCCTGATGGTGTTTGATGTAACATCCCAGGGCAATAGTAGGCCAGCATTTG
1 TCGATGGGCCAGCATCCCAATGGTGTTTGAGGTAACATCCCAGGGCAATAACAGGCCAGCATCTG
* * * * * *
15331639 TCATTGATGGTGGTAAGCACGAATGGTCGCACCAACCAAGTACCAAAGAGGTTTTCAGGGGATCA
66 TCATTCATGGTGGGAAGCACGAATGGTAGCACCAACCAAGGACCAAAGAGATATTCAGGGGATCA
** * *
15331704 AGTGCTAGGCATCCATAAAGGAAGAGCTTAAGGCAACATCAGGCATCGAGGGTCTAGCACCTACC
131 AGCACTAGGCATCCATAAAGGAAGAACTTAAGGCAACATCAGGCACCGAGGGTCTAGCACCTACC
*
15331769 AGAAATGTGTTGAGGCAACCTCTTAGGGCAAAAATGGGCTAGCATCTGCCACTAATGGTGTTGGA
196 AGAAATGTGTTGAGGCAACATCTTAGGGCAAAAATGGGCTAGCATCTGCCACTAATGGTGTTGGA
15331834 TGCAAAAAGC
Statistics
Matches: 215, Mismatches: 36, Indels: 19
0.80 0.13 0.07
Matches are distributed among these distances:
294 4 0.02
295 59 0.27
296 145 0.67
297 7 0.03
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (295 bp):
TCGATGGGCCAGCATCCCAATGGTGTTTGAGGTAACATCCCAGGGCAATAACAGGCCAGCATCTG
TCATTCATGGTGGGAAGCACGAATGGTAGCACCAACCAAGGACCAAAGAGATATTCAGGGGATCA
AGCACTAGGCATCCATAAAGGAAGAACTTAAGGCAACATCAGGCACCGAGGGTCTAGCACCTACC
AGAAATGTGTTGAGGCAACATCTTAGGGCAAAAATGGGCTAGCATCTGCCACTAATGGTGTTGGA
CGTGATTGGCAGTAGTAGATAAAGGTCAAACACTA
Found at i:15335003 original size:13 final size:13
Alignment explanation
Indices: 15334981--15335017 Score: 65
Period size: 13 Copynumber: 2.8 Consensus size: 13
15334971 CGATGGTGTT
15334981 TGAGGCAACAACC
1 TGAGGCAACAACC
*
15334994 TGAGGTAACAACC
1 TGAGGCAACAACC
15335007 TGAGGCAACAA
1 TGAGGCAACAA
15335018 TGGGCCAGCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.41, C:0.24, G:0.24, T:0.11
Consensus pattern (13 bp):
TGAGGCAACAACC
Found at i:15341830 original size:295 final size:296
Alignment explanation
Indices: 15341279--15341841 Score: 615
Period size: 295 Copynumber: 1.9 Consensus size: 296
15341269 TGCGACTAGC
* * ** * * *
15341279 CACACCACTCAAGGACCAGAGAGGTGTTTTGGGGATCAAGTGCTAGGCATCAACCAAGGAAGAGC
1 CACACCACTCAAAGACCAAAGAGGTGTTCGGGGGATCAAGCGCTAGGCACCAACCAAGGAAAAGC
* * * * * * *
15341344 TCGAGACAACATTAGGCACCGAGGGGCCAGCACTCGCAATGGAGGTGTCTGAGGTAACATCTTGG
66 TCGAGACAACATCAGGCACCAAGGGGCCAGCACTCGCAAGGGAGGTGTCTAAGGCAACATCCTGA
* * **
15341409 GGCAACAATGGGCCAACATCTGCCACTAATGGTGTTCGACGTGATTGGCCACACTAGCCACAGGC
131 GGCAACAATGGGCCAACATCTGCCACCAAAGGTGTTCGACGCAATTGGCCACACTAGCCACAGGC
** * ***
15341474 CAAACGCTATCTATGGGCCAACATCTAGATAGTTTCCAAGGTAACATCTTGGGGAAACAACAAGC
196 CAAACGCTATCTACAGGCCAACATCCAGATAGTTTCCAAGGTAACATCCCAGGGAAACAACAAGC
15341539 AAGCATCTGCCATCGATGGTGGTGGACGCGATTGGT
261 AAGCATCTGCCATCGATGGTGGTGGACGCGATTGGT
* **
15341575 CACACCAGTCAAAGACCAAAGAGGTGTTCGGGGGATCAAGCGCTAGGCACCCGCCAAGGAAAAGC
1 CACACCACTCAAAGACCAAAGAGGTGTTCGGGGGATCAAGCGCTAGGCACCAACCAAGGAAAAGC
* * *
15341640 TTGAGGCAACATCAGGCACTAAGGGG-CAGGCAC-C-CATTAGGGAGGTGT-TCAAGGCAACATC
66 TCGAGACAACATCAGGCACCAAGGGGCCA-GCACTCGCA--AGGGAGGTGTCT-AAGGCAACATC
* * *
15341701 CT-AGGCAACAACT-GGCCAACATTTGCCACCAAAGGTGTTGGATGCAATTGGCCACACTAGCCA
127 CTGAGGCAACAA-TGGGCCAACATCTGCCACCAAAGGTGTTCGACGCAATTGGCCACACTAGCCA
* * * * *
15341764 -ATGGCCAAATGC-AGT-TGACAGGCCAGCATCCCGATAGTGTT-CGAGGTAACATCCCAGGGTA
191 CA-GGCCAAACGCTA-TCT-ACAGGCCAACATCCAGATAGT-TTCCAAGGTAACATCCCAGGGAA
* *
15341825 ACAACAGGCCAGCATCT
252 ACAACAAGCAAGCATCT
15341842 ATCACCAATG
Statistics
Matches: 218, Mismatches: 40, Indels: 19
0.79 0.14 0.07
Matches are distributed among these distances:
294 5 0.02
295 111 0.51
296 102 0.47
ACGTcount: A:0.30, C:0.25, G:0.28, T:0.18
Consensus pattern (296 bp):
CACACCACTCAAAGACCAAAGAGGTGTTCGGGGGATCAAGCGCTAGGCACCAACCAAGGAAAAGC
TCGAGACAACATCAGGCACCAAGGGGCCAGCACTCGCAAGGGAGGTGTCTAAGGCAACATCCTGA
GGCAACAATGGGCCAACATCTGCCACCAAAGGTGTTCGACGCAATTGGCCACACTAGCCACAGGC
CAAACGCTATCTACAGGCCAACATCCAGATAGTTTCCAAGGTAACATCCCAGGGAAACAACAAGC
AAGCATCTGCCATCGATGGTGGTGGACGCGATTGGT
Found at i:15343491 original size:71 final size:71
Alignment explanation
Indices: 15343372--15343506 Score: 159
Period size: 71 Copynumber: 1.9 Consensus size: 71
15343362 AGGGCTGACT
* * * * * *
15343372 TGTGTCAATGGTGGTTGGGGCATGTGCCCTACACTGATTCCACATTGTGTTGAT-GCAGATCGAG
1 TGTGTCAATGGTGGTCGAGGCAAGTGCCCTACACTAATGCCACATTGTGTTAATGGCA-ATCGAG
15343436 CCATGCA
65 CCATGCA
*
15343443 TGTGTCAATGGTGGTCGAGGCAAGTGCCC-ATACTAAGTGCCAGC-TTGTGTTAATGGCAATCGA
1 TGTGTCAATGGTGGTCGAGGCAAGTGCCCTACACTAA-TGCCA-CATTGTGTTAATGGCAATCGA
15343506 G
64 G
15343507 GTAATTGCCC
Statistics
Matches: 54, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
70 5 0.09
71 45 0.83
72 4 0.07
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.28
Consensus pattern (71 bp):
TGTGTCAATGGTGGTCGAGGCAAGTGCCCTACACTAATGCCACATTGTGTTAATGGCAATCGAGC
CATGCA
Found at i:15353948 original size:297 final size:296
Alignment explanation
Indices: 15353126--15354003 Score: 711
Period size: 297 Copynumber: 3.0 Consensus size: 296
15353116 TCATTGGTAT
* * * * * * *
15353126 TGGTGGATGTGATTGGCCATACCAACCAAGGACCAAAGAGGTGTCCAAGGG-ATCAAGCACTAGG
1 TGGTGGATATGATTGGCCACACCAGCCAAGGACCAAAGAGGTATTC-GGGGAATAAAGCACTAGG
*** * * * * * * * * * * **
15353190 CTACTTGCCAATGAGGAGCTCATGGCAACATTGGACATTAAGGGGCCAGCACCTA-TCAGAGTGG
65 C-ACCCACCAAGGAAGAGCTCAAGACAACATCGGGCACTGAGGGGCCAACACCAACT-AGAAAGG
* * * *
15353254 TGTATGAGGCAACATCTCGA-GCAATAATAGGCCAACATCAACCATCAATGGTGTTGG-ATGCAA
128 TGTCTGAGGCAACATCTCGAGGCAACAATAGGCCAGCATCTACCATCAATGGTGTTGGAATG--A
* * ** * * * *
15353317 TTGGCCGTAGTAGCCAAAGGCCAGACCT-TA-TCGATTGGCCAACATGT--TAATGTTGTCTAAG
191 TTGGCTGCACCAGCCAAAGGCCAGA--TACAGTCGATGGGCCAGCAT-TCCTAATGGTGTCTAAG
* **
15353378 GCAACATC-ACAGGGCAACAACGAGCCAGCATCTGCCACCGATGG
253 GTAACATCTTGA-GGCAACAACGAGCCAGCATCTGCCACCGATGG
* * * *** *
15353422 TGGTGGTTATGATTGGCCACACCAGCCAAGGACCAAAGAGTTATTCGGGGGATAAAGTGTTGGGC
1 TGGTGGATATGATTGGCCACACCAGCCAAGGACCAAAGAGGTATTCGGGGAATAAAGCACTAGGC
* * * * * *
15353487 ACCCACCAAGGAGGAGCTCGAGGCAACATGGGGCACTGAGGGGCCAACACCCACTAGAGAGGTGT
66 ACCCACCAAGGAAGAGCTCAAGACAACATCGGGCACTGAGGGGCCAACACCAACTAGAAAGGTGT
* * ** * * ** * *
15353552 CTGAGGCAACATCACAAGGCAACAGCAAGCCAGCATTTATTATCGACGGTGTTGG-ATGTTATTG
131 CTGAGGCAACATCTCGAGGCAACAATAGGCCAGCATCTACCATCAATGGTGTTGGAATG--ATTG
* * * * * * * *
15353616 GTTGCCCCAACCAAGGGTCAGACACTGTTGATGGGCCAGCATTCCTAATGGTGT-TCAAGGTAAC
194 GCTGCACCAGCCAAAGGCCAGATACAGTCGATGGGCCAGCATTCCTAATGGTGTCT-AAGGTAAC
* * * **
15353680 ATCTTGAGGCAACAATGGGCTAGCATCTGCCATGGATGG
258 ATCTTGAGGCAACAACGAGCCAGCATCTGCCACCGATGG
* * * ** * *
15353719 TGGTGGATGTGATTGGCCACACTAGCTAAGGATGAAAGAGGTGTTCGGGGAAT-CAGACACTAGG
1 TGGTGGATATGATTGGCCACACCAGCCAAGGACCAAAGAGGTATTCGGGGAATAAAG-CACTAGG
* * * ** *
15353783 CACCCACCATGGAAGAGCTCAAGACAACTTCGGGCATTGAGGGGTTAGCACCAACTAGAAAGGTG
65 CACCCACCAAGGAAGAGCTCAAGACAACATCGGGCACTGAGGGGCCAACACCAACTAGAAAGGTG
15353848 TCTGAGGCAACATCTCGAGGCAACAATAGGCCAGCATCTACCATCAATGGTGTTGGACATGATTG
130 TCTGAGGCAACATCTCGAGGCAACAATAGGCCAGCATCTACCATCAATGGTGTTGGA-ATGATTG
* * *
15353913 GCTGCACCAGCCAAAGGCCAGATACAGTCGATGGGCTAGCA-TCCCATTGGTGTCTAAGGTAACA
194 GCTGCACCAGCCAAAGGCCAGATACAGTCGATGGGCCAGCATTCCTAATGGTGTCTAAGGTAACA
* * *
15353977 TCTTGGGGAAACAACGAGCCAACATCT
259 TCTTGAGGCAACAACGAGCCAGCATCT
15354004 ATCACCAGTG
Statistics
Matches: 450, Mismatches: 119, Indels: 26
0.76 0.20 0.04
Matches are distributed among these distances:
295 68 0.15
296 150 0.33
297 228 0.51
298 1 0.00
299 3 0.01
ACGTcount: A:0.29, C:0.23, G:0.28, T:0.20
Consensus pattern (296 bp):
TGGTGGATATGATTGGCCACACCAGCCAAGGACCAAAGAGGTATTCGGGGAATAAAGCACTAGGC
ACCCACCAAGGAAGAGCTCAAGACAACATCGGGCACTGAGGGGCCAACACCAACTAGAAAGGTGT
CTGAGGCAACATCTCGAGGCAACAATAGGCCAGCATCTACCATCAATGGTGTTGGAATGATTGGC
TGCACCAGCCAAAGGCCAGATACAGTCGATGGGCCAGCATTCCTAATGGTGTCTAAGGTAACATC
TTGAGGCAACAACGAGCCAGCATCTGCCACCGATGG
Found at i:15368131 original size:26 final size:27
Alignment explanation
Indices: 15368089--15368150 Score: 81
Period size: 26 Copynumber: 2.3 Consensus size: 27
15368079 AAACTCCTTC
* **
15368089 TAAAAAAGTTTTAAAAAATCTTGAACCA
1 TAAAAAA-TTTTAAAAAATCATGAAAAA
15368117 TAAAAAATTTT-AAAAATCATGAAAAA
1 TAAAAAATTTTAAAAAATCATGAAAAA
15368143 TAAAAAAT
1 TAAAAAAT
15368151 GAGTCATCTT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
26 20 0.65
27 4 0.13
28 7 0.23
ACGTcount: A:0.61, C:0.06, G:0.05, T:0.27
Consensus pattern (27 bp):
TAAAAAATTTTAAAAAATCATGAAAAA
Found at i:15372430 original size:19 final size:19
Alignment explanation
Indices: 15372406--15372448 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 19
15372396 ATCTGCCAGG
*
15372406 AGGCTCCTACTGATCCTAC
1 AGGCTCCTACCGATCCTAC
*
15372425 AGGCTCCTACCGATCCTGC
1 AGGCTCCTACCGATCCTAC
15372444 AGGCT
1 AGGCT
15372449 TCTAGAAGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.19, C:0.37, G:0.21, T:0.23
Consensus pattern (19 bp):
AGGCTCCTACCGATCCTAC
Found at i:15381065 original size:45 final size:45
Alignment explanation
Indices: 15380976--15381094 Score: 123
Period size: 45 Copynumber: 2.6 Consensus size: 45
15380966 GGTGCATAAC
* * * *
15380976 CCAGCATGTGCCAATAGTGTTCAAGGGAACTGCTAGCACAAAGGG
1 CCAGCATGTGCCGATAGTGATCGAGGCAACTGCTAGCACAAAGGG
** *
15381021 CCAGCATGTGCCGATAGTGATCGAGGCATGTGCTGAG-ACCAAGGG
1 CCAGCATGTGCCGATAGTGATCGAGGCAACTGCT-AGCACAAAGGG
* * * *
15381066 CCAACATGTCCCGATAATGGTCGAGGCAA
1 CCAGCATGTGCCGATAGTGATCGAGGCAA
15381095 GGGCATATGT
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
45 59 0.97
46 2 0.03
ACGTcount: A:0.29, C:0.24, G:0.30, T:0.18
Consensus pattern (45 bp):
CCAGCATGTGCCGATAGTGATCGAGGCAACTGCTAGCACAAAGGG
Found at i:15400228 original size:45 final size:44
Alignment explanation
Indices: 15400171--15400281 Score: 123
Period size: 44 Copynumber: 2.5 Consensus size: 44
15400161 AAGGCATGCA
* * * * *
15400171 TGTGCTGGTGGTGGTCGATTCAAGTGCTTGTACCAAGGGCCAGCT
1 TGTGCTGATGGTGGTCGATGCAAGTAC-CGTACCAAAGGCCAGCT
* *
15400216 TGTGCTGATGGTGGTCGAGGCAATTACCGTACCAAAGGCCAGCT
1 TGTGCTGATGGTGGTCGATGCAAGTACCGTACCAAAGGCCAGCT
** *
15400260 TGTGCAAATGATGGTCGATGCA
1 TGTGCTGATGGTGGTCGATGCA
15400282 CGTGCCCGCA
Statistics
Matches: 55, Mismatches: 11, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
44 33 0.60
45 22 0.40
ACGTcount: A:0.21, C:0.20, G:0.33, T:0.26
Consensus pattern (44 bp):
TGTGCTGATGGTGGTCGATGCAAGTACCGTACCAAAGGCCAGCT
Found at i:15400806 original size:26 final size:27
Alignment explanation
Indices: 15400757--15400816 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 27
15400747 AAATCTTTCA
* *
15400757 AAAAAATTTAAAAAAATCCCAAACTAC
1 AAAAAATTTAAAAAAATCACAAACAAC
* * *
15400784 AAAAAATTT-CAAAAATCATAAACAAT
1 AAAAAATTTAAAAAAATCACAAACAAC
15400810 AAAAAAT
1 AAAAAAT
15400817 GAGTCATCTT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 19 0.68
27 9 0.32
ACGTcount: A:0.67, C:0.13, G:0.00, T:0.20
Consensus pattern (27 bp):
AAAAAATTTAAAAAAATCACAAACAAC
Found at i:15406394 original size:45 final size:45
Alignment explanation
Indices: 15406330--15406427 Score: 153
Period size: 45 Copynumber: 2.2 Consensus size: 45
15406320 ATGATTGGGT
* *
15406330 ACACCAACCAAGGACCAAAGAGGTATCC-AGGGGATTAAGCACCTG
1 ACACCAACCAAGGACCAAAGAGGTATCCGA-GGGATCAAGCACCCG
15406375 ACACCAACCAAGGACCAAAGAGGTATCCGAGGGATCAAGCACCCG
1 ACACCAACCAAGGACCAAAGAGGTATCCGAGGGATCAAGCACCCG
*
15406420 ATACCAAC
1 ACACCAAC
15406428 TAAGAAAGAG
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
45 48 0.98
46 1 0.02
ACGTcount: A:0.39, C:0.30, G:0.22, T:0.09
Consensus pattern (45 bp):
ACACCAACCAAGGACCAAAGAGGTATCCGAGGGATCAAGCACCCG
Found at i:15417635 original size:20 final size:20
Alignment explanation
Indices: 15417610--15417653 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
15417600 TAATAGCCAA
*
15417610 GGATAACAGAGGTATTCAAG
1 GGATAAAAGAGGTATTCAAG
15417630 GGATAAAAGAGGTATTCAAG
1 GGATAAAAGAGGTATTCAAG
15417650 GGAT
1 GGAT
15417654 CAAACACTAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.41, C:0.07, G:0.32, T:0.20
Consensus pattern (20 bp):
GGATAAAAGAGGTATTCAAG
Found at i:15424177 original size:19 final size:16
Alignment explanation
Indices: 15424137--15424178 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
15424127 CCAGCCAAGA
15424137 GGCAACAACATCTTAG
1 GGCAACAACATCTTAG
*
15424153 GGCAACAACATCTTGG
1 GGCAACAACATCTTAG
*
15424169 GGTAACAACA
1 GGCAACAACA
15424179 GGCAACATCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.38, C:0.24, G:0.21, T:0.17
Consensus pattern (16 bp):
GGCAACAACATCTTAG
Found at i:15424684 original size:25 final size:24
Alignment explanation
Indices: 15424656--15424702 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 24
15424646 GACAGAATTG
15424656 AGCCAAA-CTCAGGTGCTGGGCACAT
1 AGCCAAACCT-AGGTGC-GGGCACAT
15424681 AGCCAAACCTAGGTGCGGGCAC
1 AGCCAAACCTAGGTGCGGGCAC
15424703 TGATGATCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 6 0.29
25 13 0.62
26 2 0.10
ACGTcount: A:0.28, C:0.30, G:0.30, T:0.13
Consensus pattern (24 bp):
AGCCAAACCTAGGTGCGGGCACAT
Found at i:15430452 original size:13 final size:13
Alignment explanation
Indices: 15430434--15430463 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
15430424 TGTTCGAGGT
15430434 AACATCCAAAGGC
1 AACATCCAAAGGC
15430447 AACATCCAAAGGC
1 AACATCCAAAGGC
15430460 AACA
1 AACA
15430464 ATAAGCCAGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.50, C:0.30, G:0.13, T:0.07
Consensus pattern (13 bp):
AACATCCAAAGGC
Found at i:15437573 original size:44 final size:43
Alignment explanation
Indices: 15437516--15437608 Score: 114
Period size: 44 Copynumber: 2.1 Consensus size: 43
15437506 ATAAGCTAAC
* * * * * *
15437516 CCTTGGTACGGGCACTTTCTTCGACCACCATTGCCACATGCTAG
1 CCTTGG-ATGGGCACTTGCCTCGACAACCATTGACACATGCAAG
15437560 CACTTGGATGGGCACTTGCCTCGACAACCATTGACACATGCAAG
1 C-CTTGGATGGGCACTTGCCTCGACAACCATTGACACATGCAAG
15437604 CCTTG
1 CCTTG
15437609 ATTAGCATTA
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
43 4 0.10
44 33 0.79
45 5 0.12
ACGTcount: A:0.22, C:0.32, G:0.22, T:0.25
Consensus pattern (43 bp):
CCTTGGATGGGCACTTGCCTCGACAACCATTGACACATGCAAG
Found at i:15440139 original size:45 final size:45
Alignment explanation
Indices: 15440090--15440195 Score: 115
Period size: 45 Copynumber: 2.4 Consensus size: 45
15440080 CTACCTTAAA
** * *
15440090 CACCATCAGTGCATGCTAAGCC-TTGGTGTAAGCACATGCCTCAAC
1 CACCATCAGCACAAGCT-AGCCATTGGTATAAGCACATGCCTCAAC
* * * *
15440135 CACCATCAGCACAAGCTAGCCATTGGTATAGGCACTTTCTTCAAC
1 CACCATCAGCACAAGCTAGCCATTGGTATAAGCACATGCCTCAAC
*
15440180 CACCATCAGCATAAGC
1 CACCATCAGCACAAGC
15440196 ATGCCTCAAT
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
44 4 0.08
45 47 0.92
ACGTcount: A:0.29, C:0.32, G:0.17, T:0.22
Consensus pattern (45 bp):
CACCATCAGCACAAGCTAGCCATTGGTATAAGCACATGCCTCAAC
Found at i:15444397 original size:44 final size:44
Alignment explanation
Indices: 15444340--15444426 Score: 120
Period size: 44 Copynumber: 2.0 Consensus size: 44
15444330 ATTGGGACAA
* ** * *
15444340 GTTGGCCTTTGGTACGGGCACTTGCCTCGACCACCATCAACACT
1 GTTGGCCCTTGGTACAAGCACTTGCCACAACCACCATCAACACT
*
15444384 GTTGGCCCTTGGTACAAGCACTTGCCACAACCACCATCGACAC
1 GTTGGCCCTTGGTACAAGCACTTGCCACAACCACCATCAACAC
15444427 ATGCATGCCT
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
44 37 1.00
ACGTcount: A:0.22, C:0.36, G:0.21, T:0.22
Consensus pattern (44 bp):
GTTGGCCCTTGGTACAAGCACTTGCCACAACCACCATCAACACT
Found at i:15447415 original size:45 final size:45
Alignment explanation
Indices: 15447362--15447495 Score: 169
Period size: 45 Copynumber: 3.0 Consensus size: 45
15447352 TTATCGGCAT
**
15447362 AAGCTGGCCCTTGGTACAAGCACTTGCCTTGACCACCATTGACAC
1 AAGCTGGCCCTTGGTATGAGCACTTGCCTTGACCACCATTGACAC
* * * * * *
15447407 ATGTTGGCCCTTGGTATGGGCATTTGTCTCGACCACCATTGACAC
1 AAGCTGGCCCTTGGTATGAGCACTTGCCTTGACCACCATTGACAC
* * *
15447452 AAGCCGGCCCTTGGTATGAGCACTTACCTTGACCACCATCGACA
1 AAGCTGGCCCTTGGTATGAGCACTTGCCTTGACCACCATTGACA
15447496 TATGCCATGC
Statistics
Matches: 72, Mismatches: 17, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
45 72 1.00
ACGTcount: A:0.22, C:0.31, G:0.22, T:0.25
Consensus pattern (45 bp):
AAGCTGGCCCTTGGTATGAGCACTTGCCTTGACCACCATTGACAC
Found at i:15448075 original size:26 final size:26
Alignment explanation
Indices: 15448046--15448100 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
15448036 GCCCCCATGC
15448046 ACCATTCGATCGATACTCACATTATG
1 ACCATTCGATCGATACTCACATTATG
*
15448072 ACCATTTGATCGATACTCACATTATG
1 ACCATTCGATCGATACTCACATTATG
15448098 ACC
1 ACC
15448101 CCAAGTTAGA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.31, C:0.27, G:0.11, T:0.31
Consensus pattern (26 bp):
ACCATTCGATCGATACTCACATTATG
Found at i:15449699 original size:45 final size:45
Alignment explanation
Indices: 15449645--15449746 Score: 114
Period size: 45 Copynumber: 2.3 Consensus size: 45
15449635 TGTTGGTGTA
* * *
15449645 TGGTGCGGGCACATGCATCGACCATCATCGGCACAAGCTAACCCT
1 TGGTACGGGCACATACATCGACCACCATCGGCACAAGCTAACCCT
* * * * **
15449690 TGGTACGGGCACTTACCTCGACCACCATGGGCACATGCTTGCCCT
1 TGGTACGGGCACATACATCGACCACCATCGGCACAAGCTAACCCT
*
15449735 TGGTATGGGCAC
1 TGGTACGGGCAC
15449747 TTGCCTTAAC
Statistics
Matches: 47, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.21, C:0.32, G:0.26, T:0.21
Consensus pattern (45 bp):
TGGTACGGGCACATACATCGACCACCATCGGCACAAGCTAACCCT
Found at i:15449747 original size:45 final size:45
Alignment explanation
Indices: 15449662--15449777 Score: 142
Period size: 45 Copynumber: 2.6 Consensus size: 45
15449652 GGCACATGCA
* * * **
15449662 TCGACCATCATCGGCACAAGCTAACCCTTGGTACGGGCACTTACC
1 TCGACCACCATGGGCACATGCTTGCCCTTGGTACGGGCACTTACC
* *
15449707 TCGACCACCATGGGCACATGCTTGCCCTTGGTATGGGCACTTGCC
1 TCGACCACCATGGGCACATGCTTGCCCTTGGTACGGGCACTTACC
** *
15449752 TTAACCACCATGGGCACATGCATGCC
1 TCGACCACCATGGGCACATGCTTGCC
15449778 TTGACCAACA
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 61 1.00
ACGTcount: A:0.22, C:0.34, G:0.22, T:0.22
Consensus pattern (45 bp):
TCGACCACCATGGGCACATGCTTGCCCTTGGTACGGGCACTTACC
Found at i:15452299 original size:45 final size:45
Alignment explanation
Indices: 15452203--15452313 Score: 136
Period size: 45 Copynumber: 2.5 Consensus size: 45
15452193 GACCATCATT
* * ** *
15452203 AGCACAAGCTGGCCCTTAATACGGGCACTTGCCTCAGCCACTATC
1 AGCACATGCTAGCCCTTGGTACGGGCACTTGCCTCAGCCACCATC
*
15452248 AGCACATGCTAGCCTTTGGTACGGGCACTTGCCTC-GACCACCATC
1 AGCACATGCTAGCCCTTGGTACGGGCACTTGCCTCAG-CCACCATC
15452293 -GCCACATGCTAGCCCTTGGTA
1 AG-CACATGCTAGCCCTTGGTA
15452314 TAGGCATTTA
Statistics
Matches: 57, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
44 2 0.04
45 55 0.96
ACGTcount: A:0.22, C:0.35, G:0.22, T:0.22
Consensus pattern (45 bp):
AGCACATGCTAGCCCTTGGTACGGGCACTTGCCTCAGCCACCATC
Found at i:15452343 original size:45 final size:45
Alignment explanation
Indices: 15452226--15452346 Score: 118
Period size: 45 Copynumber: 2.7 Consensus size: 45
15452216 CCTTAATACG
* * * *
15452226 GGCACTTGCCTC-AGCCACTATCAGCACATGCTAGCCTTTGGTACG
1 GGCACTTACCTCGA-CCACTATCACCACATGCTAGCCCTTGGTACA
* * * *
15452271 GGCACTTGCCTCGACCACCATCGCCACATGCTAGCCCTTGGTATA
1 GGCACTTACCTCGACCACTATCACCACATGCTAGCCCTTGGTACA
* ** *
15452316 GGCATTTACCTTTACCACTATTACCACATGC
1 GGCACTTACCTCGACCACTATCACCACATGC
15452347 ATTCCTCAAT
Statistics
Matches: 62, Mismatches: 13, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
45 61 0.98
46 1 0.02
ACGTcount: A:0.21, C:0.35, G:0.18, T:0.26
Consensus pattern (45 bp):
GGCACTTACCTCGACCACTATCACCACATGCTAGCCCTTGGTACA
Found at i:15455160 original size:25 final size:26
Alignment explanation
Indices: 15455109--15455160 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15455099 TATTTTTCAT
**
15455109 GATTTTTAAAATTTTTTACAGTTAGA
1 GATTTTTAAAATTTTTTACAGAAAGA
*
15455135 GATTTTTAAAATTTTTT-TAGAAAGA
1 GATTTTTAAAATTTTTTACAGAAAGA
15455160 G
1 G
15455161 TTTCGACCCC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 6 0.26
26 17 0.74
ACGTcount: A:0.37, C:0.02, G:0.13, T:0.48
Consensus pattern (26 bp):
GATTTTTAAAATTTTTTACAGAAAGA
Found at i:15461585 original size:205 final size:197
Alignment explanation
Indices: 15461241--15461643 Score: 707
Period size: 205 Copynumber: 2.0 Consensus size: 197
15461231 GGCTTGGTCC
*
15461241 CTTGGGCTATCAAACCCTATCCTACTAGAACCAATACTAGCTTACTTGTTGACTGTGACACATGC
1 CTTGGGCTATCAAACCCTATCCTACTAGAACCAATACTAGCTTACTTGTTGACTGTAACACATGC
15461306 CCTTACCTTGACCACCATCGAGACATGTTGGCCCTTCATCTTGGCATATGCTTCGACCATCATCG
66 CCTTACCTTGACCACCATCGAGACATGTTGGCCCTTCATCTTGGCATATGCTTCGACCATCATCG
**
15461371 GTACATTCTGGTCCTTTATGAGGGTAGTTCCTTCAATCACCATCAACAAATGCTAGGTGTAGGTG
131 ACACATTCTGGTCCTTTATGAGGGTAGTTCCTTCAATCACCATCAACAAATGCTAGGTGTAGGTG
15461436 CG
196 CG
15461438 CTTGGGCTATCAAACCCTATCCTACTAGAACCCCAAGGCCAATACTAGCTTACTTGTTGACTGTA
1 CTTGGGCTATCAAACCCTATCCTACTAG------AA--CCAATACTAGCTTACTTGTTGACTGTA
15461503 ACACATGCCCTTACCTTGACCACCATCGAGACATGTTGGCCCTTCATCTTGGCATATGCTTCGAC
58 ACACATGCCCTTACCTTGACCACCATCGAGACATGTTGGCCCTTCATCTTGGCATATGCTTCGAC
15461568 CATCATCGACACATTCTGGTCCTTTATGAGGGTAGTTCCTTCAATCACCATCAACAAATGCTAGG
123 CATCATCGACACATTCTGGTCCTTTATGAGGGTAGTTCCTTCAATCACCATCAACAAATGCTAGG
15461633 TGTAGGTGCG
188 TGTAGGTGCG
15461643 C
1 C
15461644 CAAGCACCTG
Statistics
Matches: 195, Mismatches: 3, Indels: 8
0.95 0.01 0.04
Matches are distributed among these distances:
197 28 0.14
203 2 0.01
205 165 0.85
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.29
Consensus pattern (197 bp):
CTTGGGCTATCAAACCCTATCCTACTAGAACCAATACTAGCTTACTTGTTGACTGTAACACATGC
CCTTACCTTGACCACCATCGAGACATGTTGGCCCTTCATCTTGGCATATGCTTCGACCATCATCG
ACACATTCTGGTCCTTTATGAGGGTAGTTCCTTCAATCACCATCAACAAATGCTAGGTGTAGGTG
CG
Found at i:15467996 original size:45 final size:45
Alignment explanation
Indices: 15467942--15468046 Score: 122
Period size: 45 Copynumber: 2.3 Consensus size: 45
15467932 ACATACATCG
* * *
15467942 ACCATTATTGGCATAAGTTGGC-CTTTAGTACGGGCACTTACCTCA
1 ACCACTATTGGCACAAGCTGGCTC-TTAGTACGGGCACTTACCTCA
* * *
15467987 ACCACTATTGGCACATGCTGGCTCTTGGTATGGGCACTTACCTCA
1 ACCACTATTGGCACAAGCTGGCTCTTAGTACGGGCACTTACCTCA
* *
15468032 GCCACCATTGGCACA
1 ACCACTATTGGCACA
15468047 TGCATACCTT
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
45 50 0.98
46 1 0.02
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.28
Consensus pattern (45 bp):
ACCACTATTGGCACAAGCTGGCTCTTAGTACGGGCACTTACCTCA
Found at i:15470329 original size:45 final size:45
Alignment explanation
Indices: 15470263--15470362 Score: 119
Period size: 45 Copynumber: 2.2 Consensus size: 45
15470253 CCAAGGCTTT
* * * * *
15470263 GACCATCAACGGCACATACTAGCGCATGGTGCAGGCACATACATC
1 GACCATCATCGCCACAAACTAGCCCATGGTACAGGCACATACATC
* * * *
15470308 GACCATCATCGCCACAAACTAGCCCTTGGTACAGGCACTTGCCTC
1 GACCATCATCGCCACAAACTAGCCCATGGTACAGGCACATACATC
15470353 GACCATCATC
1 GACCATCATC
15470363 AGCACATGCT
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.28, C:0.35, G:0.19, T:0.18
Consensus pattern (45 bp):
GACCATCATCGCCACAAACTAGCCCATGGTACAGGCACATACATC
Found at i:15470378 original size:45 final size:45
Alignment explanation
Indices: 15470306--15470458 Score: 134
Period size: 45 Copynumber: 3.4 Consensus size: 45
15470296 GGCACATACA
*
15470306 TCGACCATCATC-GCCACAAACTAGCCCTTGGTACAGGCACTTGCC
1 TCGACCATCATCAG-CACAAGCTAGCCCTTGGTACAGGCACTTGCC
* * *
15470351 TCGACCATCATCAGCACATGCTGGCCCTTGTTAC-GGCAACTTGCC
1 TCGACCATCATCAGCACAAGCTAGCCCTTGGTACAGGC-ACTTGCC
* * * * * * *
15470396 TTGACCA-CTATCGGCATAAG-TCAACCCTTGGTATAGGCATTTACC
1 TCGACCATC-ATCAGCACAAGCT-AGCCCTTGGTACAGGCACTTGCC
*
15470441 TCGACCATCATCAACACA
1 TCGACCATCATCAGCACA
15470459 TCCATGCCTC
Statistics
Matches: 84, Mismatches: 18, Indels: 12
0.74 0.16 0.11
Matches are distributed among these distances:
44 5 0.06
45 74 0.88
46 5 0.06
ACGTcount: A:0.25, C:0.34, G:0.17, T:0.24
Consensus pattern (45 bp):
TCGACCATCATCAGCACAAGCTAGCCCTTGGTACAGGCACTTGCC
Found at i:15475504 original size:58 final size:57
Alignment explanation
Indices: 15475445--15475898 Score: 418
Period size: 58 Copynumber: 7.7 Consensus size: 57
15475435 TGTACAGGGA
*
15475445 AAAATTGATACTTTCAACTTTTCCCAAAAATATTCTTTTGAAACTTTAATTTCAAGG
1 AAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTTGAAACTTTAATTTCAAGG
* * *
15475502 AAAATTGATACTTTCAACTTTTCCTCAAAAAT-TCATTTTTGAAAAAAAC-TTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCC-CAAAAATAT-TTTTTTG----AAACTTTAATTTCAAGG
* *
15475563 AAAATTAATACTTTCAACTTTTTCCCAAAAATATTTTTTTGTGGAAAGC-TTATTTTCAAGG
1 AAAATTGATACTTTCAAC-TTTTCCCAAAAATA-TTTTTT-T-GAAA-CTTTAATTTCAAGG
* *
15475624 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTGTTTTTGGAAACTTTAATTTCGAGA
1 AAAATTGATACTTTCAACTTTTCCC-AAAAATA---TT-TTTTT-GAAACTTTAATTTCAAGG
*** * * *
15475687 AAAATTGATACTTTCAACTTTTCCTC-AAAA-ATCCCTTTAAAAATTT-ATCTTTAAGG
1 AAAATTGATACTTTCAACTTTTCC-CAAAAATATTTTTTTGAAACTTTAAT-TTCAAGG
* * * * *
15475743 AAAATTGATACTTTCAAATTTTTCTCAAAAATATTTTTTTAAAACTTTAATTTCGAGA
1 AAAATTGATACTTTC-AACTTTTCCCAAAAATATTTTTTTGAAACTTTAATTTCAAGG
* * * * * *
15475801 AAAATTGATACTTTCAACTTTTTCTCAAAATCTTTTTTTTTGAAAATTT-ATTTTACGG
1 AAAATTGATACTTTCAAC-TTTTCCCAAAA-ATATTTTTTTGAAACTTTAATTTCAAGG
*
15475859 AAAATTGATACTTTCAACTTTTTTCCAAAAATATTTTTTT
1 AAAATTGATACTTTCAAC-TTTTCCCAAAAATATTTTTTT
15475899 TAATTTTATT
Statistics
Matches: 331, Mismatches: 41, Indels: 50
0.78 0.10 0.12
Matches are distributed among these distances:
55 2 0.01
56 26 0.08
57 49 0.15
58 88 0.27
59 16 0.05
60 10 0.03
61 71 0.21
62 19 0.06
63 44 0.13
64 6 0.02
ACGTcount: A:0.36, C:0.13, G:0.07, T:0.44
Consensus pattern (57 bp):
AAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTTGAAACTTTAATTTCAAGG
Done.