Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19866354
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 74000 characters in sequence are not A, C, G, or T
File 65 of 100
Found at i:15475928 original size:15 final size:16
Alignment explanation
Indices: 15475910--15475945 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
15475900 AATTTTATTT
15475910 AAAATAAAT-AAAATA
1 AAAATAAATAAAAATA
15475925 AAAATAAATAAAAATA
1 AAAATAAATAAAAATA
15475941 AAAAT
1 AAAAT
15475946 GTTAAACAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 9 0.45
16 11 0.55
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (16 bp):
AAAATAAATAAAAATA
Found at i:15476884 original size:8 final size:7
Alignment explanation
Indices: 15476868--15477083 Score: 93
Period size: 7 Copynumber: 31.0 Consensus size: 7
15476858 GATAATATAT
*
15476868 TAATTAA
1 TAATAAA
15476875 TAGATAAA
1 TA-ATAAA
15476883 TAATAATA
1 TAATAA-A
15476891 TATATAAA
1 TA-ATAAA
15476899 TAGATAAA
1 TA-ATAAA
15476907 TAAT-AA
1 TAATAAA
*
15476913 TAATACA
1 TAATAAA
*
15476920 T-ATATA
1 TAATAAA
*
15476926 TATATCAA
1 TA-ATAAA
*
15476934 CAGATAAA
1 TA-ATAAA
15476942 TAATAAA
1 TAATAAA
15476949 -AAT-AA
1 TAATAAA
15476954 TAA-AATA
1 TAATAA-A
*
15476961 AAATAAA
1 TAATAAA
*
15476968 T-ATATAT
1 TAATA-AA
15476975 TAATAAA
1 TAATAAA
*
15476982 TAGT-AA
1 TAATAAA
15476988 TAATAAA
1 TAATAAA
*
15476995 TAAATGAA
1 T-AATAAA
15477003 TAATAAA
1 TAATAAA
15477010 TACATAAA
1 TA-ATAAA
15477018 -ATATAAA
1 TA-ATAAA
* *
15477025 GAAAAAA
1 TAATAAA
*
15477032 T-ATATA
1 TAATAAA
15477038 T-A-AAA
1 TAATAAA
15477043 TAA-AAA
1 TAATAAA
15477049 TAA-AAA
1 TAATAAA
15477055 TAATAAA
1 TAATAAA
15477062 -ATATAGAA
1 TA-ATA-AA
15477070 TACA-AAA
1 TA-ATAAA
15477077 TAATAAA
1 TAATAAA
15477084 AAAAAAACAA
Statistics
Matches: 162, Mismatches: 25, Indels: 44
0.70 0.11 0.19
Matches are distributed among these distances:
5 5 0.03
6 45 0.28
7 58 0.36
8 48 0.30
9 6 0.04
ACGTcount: A:0.66, C:0.02, G:0.03, T:0.28
Consensus pattern (7 bp):
TAATAAA
Found at i:15476900 original size:24 final size:26
Alignment explanation
Indices: 15476859--15476914 Score: 89
Period size: 24 Copynumber: 2.2 Consensus size: 26
15476849 GATAATAAGG
*
15476859 ATAATATATTAATTAATAGATAAATA
1 ATAATATATTAATAAATAGATAAATA
15476885 ATAATATA-T-ATAAATAGATAAATA
1 ATAATATATTAATAAATAGATAAATA
15476909 ATAATA
1 ATAATA
15476915 ATACATATAT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
24 20 0.69
25 1 0.03
26 8 0.28
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.36
Consensus pattern (26 bp):
ATAATATATTAATAAATAGATAAATA
Found at i:15476996 original size:44 final size:45
Alignment explanation
Indices: 15476897--15477011 Score: 119
Period size: 44 Copynumber: 2.5 Consensus size: 45
15476887 AATATATATA
* * *
15476897 AATAGATAAATAATAATAATACATATATATATATCAACAGATAAAT
1 AATA-ATAAATAATAATAATAAATAAATATATATCAACAAATAAAT
* * *
15476943 AATAA-AAATAATAA-AATAAAATAAATATATATTAATAAAT-AGT
1 AATAATAAATAATAATAAT-AAATAAATATATATCAACAAATAAAT
15476986 AATAATAAATAAATGAATAATAAATA
1 AATAATAAAT-AAT-AATAATAAATA
15477012 CATAAAATAT
Statistics
Matches: 58, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
43 10 0.17
44 30 0.52
45 4 0.07
46 11 0.19
47 3 0.05
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.30
Consensus pattern (45 bp):
AATAATAAATAATAATAATAAATAAATATATATCAACAAATAAAT
Found at i:15477023 original size:15 final size:14
Alignment explanation
Indices: 15476878--15477071 Score: 66
Period size: 13 Copynumber: 13.5 Consensus size: 14
15476868 TAATTAATAG
15476878 ATAAATAATAATATAT
1 ATAAATAATAA-A-AT
15476894 ATAAATAGAT-AAAT
1 ATAAATA-ATAAAAT
*
15476908 A-ATAATAAT-ACAT
1 ATA-AATAATAAAAT
* * *
15476921 ATATATATATCAACAG
1 ATAAATA-AT-AAAAT
15476937 ATAAATAATAAAA-
1 ATAAATAATAAAAT
*
15476950 AT-AATAA-AATAAA
1 ATAAATAATAA-AAT
* *
15476963 ATAAAT-ATATATT
1 ATAAATAATAAAAT
* *
15476976 AATAAATAGTAATA-
1 -ATAAATAATAAAAT
*
15476990 ATAAATAA-ATGAAT
1 ATAAATAATA-AAAT
15477004 AATAAATACATAAAAT
1 -ATAAATA-ATAAAAT
*
15477020 ATAAAGAA-AAAAT
1 ATAAATAATAAAAT
*
15477033 ATATATAAAATAAAAAT
1 ATA-A-ATAAT-AAAAT
*
15477050 AAAAATAATAAAAT
1 ATAAATAATAAAAT
15477064 ATAGAATA
1 ATA-AATA
15477072 CAAAATAATA
Statistics
Matches: 135, Mismatches: 21, Indels: 45
0.67 0.10 0.22
Matches are distributed among these distances:
11 2 0.01
12 8 0.06
13 32 0.24
14 32 0.24
15 29 0.21
16 22 0.16
17 10 0.07
ACGTcount: A:0.66, C:0.02, G:0.03, T:0.28
Consensus pattern (14 bp):
ATAAATAATAAAAT
Found at i:15477040 original size:17 final size:17
Alignment explanation
Indices: 15477018--15477050 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
15477008 AATACATAAA
15477018 ATATAAAGA-AAAAATAT
1 ATATAAA-ATAAAAATAT
15477035 ATATAAAATAAAAATA
1 ATATAAAATAAAAATA
15477051 AAAATAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 1 0.07
17 14 0.93
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.24
Consensus pattern (17 bp):
ATATAAAATAAAAATAT
Found at i:15477042 original size:11 final size:10
Alignment explanation
Indices: 15476941--15477084 Score: 61
Period size: 11 Copynumber: 13.9 Consensus size: 10
15476931 CAACAGATAA
15476941 ATAATAAAA-
1 ATAATAAAAT
15476950 ATAATAAAAT
1 ATAATAAAAT
*
15476960 AAAATAAATAT
1 ATAATAAA-AT
*
15476971 ATATTAATAA-
1 ATAATAA-AAT
*
15476981 ATAGTAATAAT
1 ATAATAA-AAT
15476992 A-AAT-AAAT
1 ATAATAAAAT
15477000 GAATAAT-AAAT
1 --ATAATAAAAT
*
15477011 A-CATAAAAT
1 ATAATAAAAT
*
15477020 ATAAAGAAAAAAT
1 AT--A-ATAAAAT
15477033 ATATATAAAAT
1 ATA-ATAAAAT
*
15477044 AAAAATAAAA-
1 -ATAATAAAAT
15477054 ATAATAAAAT
1 ATAATAAAAT
15477064 ATAGAATACAAA-
1 AT--AATA-AAAT
15477076 ATAATAAAA
1 ATAATAAAA
15477085 AAAAAACAAG
Statistics
Matches: 106, Mismatches: 12, Indels: 34
0.70 0.08 0.22
Matches are distributed among these distances:
8 5 0.05
9 27 0.25
10 25 0.24
11 29 0.27
12 9 0.08
13 11 0.10
ACGTcount: A:0.70, C:0.01, G:0.03, T:0.26
Consensus pattern (10 bp):
ATAATAAAAT
Found at i:15477064 original size:31 final size:31
Alignment explanation
Indices: 15476943--15477066 Score: 81
Period size: 31 Copynumber: 3.8 Consensus size: 31
15476933 ACAGATAAAT
* * *
15476943 AATAAAAATAATAA-AATAAAATAAATATAT
1 AATAAAAATAAAAATAATAAAATATATATAA
* ** *
15476973 ATTAATAAATAGTAATAATAAATAAATGAATAATAA
1 AATAA-AAATAAAAATAATAAA-ATAT--AT-ATAA
* * *
15477009 ATACATAAAATATAAAGAA-AAAATATATATAA
1 A-ATA-AAAATAAAAATAATAAAATATATATAA
15477041 AATAAAAATAAAAATAATAAAATATA
1 AATAAAAATAAAAATAATAAAATATA
15477067 GAATACAAAA
Statistics
Matches: 71, Mismatches: 14, Indels: 17
0.70 0.14 0.17
Matches are distributed among these distances:
30 15 0.21
31 18 0.25
32 11 0.15
33 4 0.06
35 5 0.07
36 7 0.10
37 10 0.14
38 1 0.01
ACGTcount: A:0.70, C:0.01, G:0.02, T:0.27
Consensus pattern (31 bp):
AATAAAAATAAAAATAATAAAATATATATAA
Found at i:15477233 original size:45 final size:45
Alignment explanation
Indices: 15477160--15477254 Score: 118
Period size: 45 Copynumber: 2.1 Consensus size: 45
15477150 TGTCTACAAG
** * *
15477160 CGACACAAGCTAGCCCTTGGTATGGGTACTTGCCTCGACCACCAT
1 CGACACAAGCTAGCCCTTGGTACAGGTACCTGCCTCGACCAACAT
* * * *
15477205 CGACACATGCTGGCCCTTTGTACAGGTACCTGCCTCGACCAACTT
1 CGACACAAGCTAGCCCTTGGTACAGGTACCTGCCTCGACCAACAT
15477250 CGACA
1 CGACA
15477255 TAAGTCAACC
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.22, C:0.35, G:0.21, T:0.22
Consensus pattern (45 bp):
CGACACAAGCTAGCCCTTGGTACAGGTACCTGCCTCGACCAACAT
Found at i:15477664 original size:13 final size:13
Alignment explanation
Indices: 15477646--15477671 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
15477636 CATCATCGGC
15477646 ATATGCTCGGCTT
1 ATATGCTCGGCTT
15477659 ATATGCTCGGCTT
1 ATATGCTCGGCTT
15477672 TGGTGCAGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.23, G:0.23, T:0.38
Consensus pattern (13 bp):
ATATGCTCGGCTT
Found at i:15487283 original size:45 final size:45
Alignment explanation
Indices: 15487248--15487369 Score: 147
Period size: 44 Copynumber: 2.7 Consensus size: 45
15487238 ATCAGTGGCT
15487248 TAAGCTGGCCTTTGGTATGGGCACTTACCTCGACCACCATCGGCA
1 TAAGCTGGCCTTTGGTATGGGCACTTACCTCGACCACCATCGGCA
* * * * * * * * *
15487293 CATGGTGGCCCTTGGTACGGGCACATGCC-CAACCACCATCAGCA
1 TAAGCTGGCCTTTGGTATGGGCACTTACCTCGACCACCATCGGCA
*
15487337 TAAGCTGGCCTTTGGTATGGGTACTTACCTCGA
1 TAAGCTGGCCTTTGGTATGGGCACTTACCTCGA
15487370 TTACATTGAC
Statistics
Matches: 58, Mismatches: 18, Indels: 2
0.74 0.23 0.03
Matches are distributed among these distances:
44 34 0.59
45 24 0.41
ACGTcount: A:0.20, C:0.30, G:0.25, T:0.24
Consensus pattern (45 bp):
TAAGCTGGCCTTTGGTATGGGCACTTACCTCGACCACCATCGGCA
Found at i:15490580 original size:44 final size:45
Alignment explanation
Indices: 15490515--15490609 Score: 138
Period size: 44 Copynumber: 2.1 Consensus size: 45
15490505 GTGCTAGCTT
* * * *
15490515 GCCCTTGGTACAGGCATTTACCTTGACCA-CCTCGGCACATGCTG
1 GCCCTTGGCACAGGCACTTACCTTGACCATCATCAGCACATGCTG
*
15490559 GCCCTTGGCACAGGCACTTACCTTGACCATCATCAGTACATGCTG
1 GCCCTTGGCACAGGCACTTACCTTGACCATCATCAGCACATGCTG
15490604 GCCCTT
1 GCCCTT
15490610 TATGCAGGCA
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 27 0.60
45 18 0.40
ACGTcount: A:0.19, C:0.35, G:0.21, T:0.25
Consensus pattern (45 bp):
GCCCTTGGCACAGGCACTTACCTTGACCATCATCAGCACATGCTG
Found at i:15491616 original size:45 final size:45
Alignment explanation
Indices: 15491533--15491631 Score: 112
Period size: 45 Copynumber: 2.2 Consensus size: 45
15491523 CGACCATTAG
* ** *
15491533 CGGCACAAGCTAGCCCTTGGTAGGGGCACTTATGTTGACCACCAT
1 CGGCACATGCTAGCCCTTGGTAGCAGCACATATGTTGACCACCAT
15491578 CGGCACATGCTAGCCCTTGGTA-CAG-ACATATGCCTTGACCACCAT
1 CGGCACATGCTAGCCCTTGGTAGCAGCACATATG--TTGACCACCAT
**
15491623 TAGCACATG
1 CGGCACATG
15491632 TATGCCTTGA
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
43 6 0.13
44 1 0.02
45 39 0.85
ACGTcount: A:0.24, C:0.30, G:0.23, T:0.22
Consensus pattern (45 bp):
CGGCACATGCTAGCCCTTGGTAGCAGCACATATGTTGACCACCAT
Found at i:15496334 original size:45 final size:45
Alignment explanation
Indices: 15496209--15496334 Score: 103
Period size: 45 Copynumber: 2.8 Consensus size: 45
15496199 TGCTAGCACA
* * * *
15496209 TGGTGTGGGCATATGCATTAACCATTATTGGCACA-AGCTGGCCTT
1 TGGTGTGGGCCT-TGCCTTAACCATCATTGGCACATAGCTGGCCCT
*** ** * * *
15496254 TGGTACAGGCACTTGCCTCGACCACCATCGACACATA-CTGGCCCT
1 TGGTGTGGGC-CTTGCCTTAACCATCATTGGCACATAGCTGGCCCT
15496299 TGGTGTGGGCGCTTGCCTTAACCATCATTGGCACAT
1 TGGTGTGGGC-CTTGCCTTAACCATCATTGGCACAT
15496335 GTATGCCTCA
Statistics
Matches: 58, Mismatches: 21, Indels: 4
0.70 0.25 0.05
Matches are distributed among these distances:
45 56 0.97
46 2 0.03
ACGTcount: A:0.21, C:0.28, G:0.25, T:0.27
Consensus pattern (45 bp):
TGGTGTGGGCCTTGCCTTAACCATCATTGGCACATAGCTGGCCCT
Found at i:15504573 original size:21 final size:21
Alignment explanation
Indices: 15504547--15504611 Score: 64
Period size: 21 Copynumber: 3.1 Consensus size: 21
15504537 TTTGCAATAA
15504547 CTTATTTGATTGAAGGCTAAT
1 CTTATTTGATTGAAGGCTAAT
** *
15504568 CTTA-TTGAGTTCCAGAGC--AC
1 CTTATTTGA-TTGAAG-GCTAAT
15504588 CTTATTTGATTGAAGGCTAAT
1 CTTATTTGATTGAAGGCTAAT
15504609 CTT
1 CTT
15504612 GGATAATCAA
Statistics
Matches: 33, Mismatches: 6, Indels: 10
0.67 0.12 0.20
Matches are distributed among these distances:
19 2 0.06
20 13 0.39
21 16 0.48
22 2 0.06
ACGTcount: A:0.26, C:0.15, G:0.18, T:0.40
Consensus pattern (21 bp):
CTTATTTGATTGAAGGCTAAT
Found at i:15507861 original size:22 final size:22
Alignment explanation
Indices: 15507836--15507886 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
15507826 TTTTGTTTTA
15507836 TTATTATTATTCATTTATTAAT
1 TTATTATTATTCATTTATTAAT
** * *
15507858 TTATCGTTATTTATTTATTTAT
1 TTATTATTATTCATTTATTAAT
15507880 TTATTAT
1 TTATTAT
15507887 GTATATTTTT
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.27, C:0.04, G:0.02, T:0.67
Consensus pattern (22 bp):
TTATTATTATTCATTTATTAAT
Found at i:15507873 original size:4 final size:4
Alignment explanation
Indices: 15507842--15507884 Score: 50
Period size: 4 Copynumber: 10.2 Consensus size: 4
15507832 TTTATTATTA
* *
15507842 TTAT TCAT TTAT TAAT TTAT CGTTAT TTAT TTAT TTAT TTAT T
1 TTAT TTAT TTAT TTAT TTAT --TTAT TTAT TTAT TTAT TTAT T
15507885 ATGTATATTT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
4 29 0.88
6 4 0.12
ACGTcount: A:0.26, C:0.05, G:0.02, T:0.67
Consensus pattern (4 bp):
TTAT
Found at i:15513565 original size:22 final size:22
Alignment explanation
Indices: 15513539--15513582 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
15513529 TGTATATTTA
*
15513539 TATTTGTATCTCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
15513561 TATTTGTATCCCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
15513583 GACAAAAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (22 bp):
TATTTGTATCCCTAGAATTAAG
Found at i:15513835 original size:26 final size:25
Alignment explanation
Indices: 15513806--15513871 Score: 80
Period size: 25 Copynumber: 2.6 Consensus size: 25
15513796 AAATTTTTCA
* * *
15513806 GCCTTCATTGCTGAATTCTATTTTAG
1 GCCTTCATTGCCGAATCCT-GTTTAG
15513832 GCCTTCATTGCCGAATCCTGTTTAG
1 GCCTTCATTGCCGAATCCTGTTTAG
15513857 GCC-TCTATTGCCGAA
1 GCCTTC-ATTGCCGAA
15513872 CCCTTTCAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
24 2 0.06
25 17 0.47
26 17 0.47
ACGTcount: A:0.18, C:0.26, G:0.18, T:0.38
Consensus pattern (25 bp):
GCCTTCATTGCCGAATCCTGTTTAG
Found at i:15517324 original size:22 final size:22
Alignment explanation
Indices: 15517296--15517339 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
15517286 ATTTTTTGTC
* *
15517296 CTTAATTTTAGGGATACAAATA
1 CTTAATTCTAGAGATACAAATA
15517318 CTTAATTCTAGAGATACAAATA
1 CTTAATTCTAGAGATACAAATA
15517340 TAAATCTACA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.43, C:0.11, G:0.11, T:0.34
Consensus pattern (22 bp):
CTTAATTCTAGAGATACAAATA
Found at i:15517352 original size:20 final size:21
Alignment explanation
Indices: 15517308--15517357 Score: 57
Period size: 20 Copynumber: 2.3 Consensus size: 21
15517298 TAATTTTAGG
* *
15517308 GATACAAATACTTAATTCTAGA
1 GATACAAATAC-TAAATCTACA
15517330 GATACAAATA-TAAATCTACA
1 GATACAAATACTAAATCTACA
15517350 GATTACAA
1 GA-TACAA
15517358 GATTGCAACC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 10 0.40
21 5 0.20
22 10 0.40
ACGTcount: A:0.50, C:0.14, G:0.08, T:0.28
Consensus pattern (21 bp):
GATACAAATACTAAATCTACA
Found at i:15521296 original size:22 final size:22
Alignment explanation
Indices: 15521268--15521311 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
15521258 CTAAATCTTC
*
15521268 CTTAATTCTAGGGATACAAATA
1 CTTAATTCTAGAGATACAAATA
15521290 CTTAATTCTAGAGATACAAATA
1 CTTAATTCTAGAGATACAAATA
15521312 TAAATATGCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.43, C:0.14, G:0.11, T:0.32
Consensus pattern (22 bp):
CTTAATTCTAGAGATACAAATA
Found at i:15533818 original size:486 final size:487
Alignment explanation
Indices: 15532787--15535211 Score: 2724
Period size: 481 Copynumber: 5.1 Consensus size: 487
15532777 AAATTAGGTG
* * * ** *
15532787 CCAATAATGATTTCACAAATGGTATCCAAATATCAACAGCATCATACAAATTTCTTAGAGCATTC
1 CCAATAACGATTTCGCAAATGATATCCAAATATCAACAGCATCCCACAAATTCCTTAGAGCATTC
* *** * * * * * * * * *
15532852 ATGACTCTTTTTAAAAAAATACGTTTAGAGCAAAAAAGTGATAAAAAATTAAAATCGTGCAAACG
66 ATGAATCCCCTT-AAAAAATGCCTCTAGAGCAGAAACGCGATGAAAAATTAAAATCGTACAAATG
* * ***
15532917 ATTTTTATATCACAATTTGAAATCGTGCAAATGGTTTTTATGCCTATAATTGTTCAAAAACAAAA
130 GTTTTTATATCACAATTTGAAATCGTGCAAATGGTTTTCAT-CC-ATAATCACTCAAAAACAAAA
* * * *
15532982 TTTTGACATTTTGAGCTCTAAAATCCTTTCATAACTTGCACTTTAACATTGTTAAAATTTAAAAC
193 TTTTGACATTTTGAGCTCCAAAAT-CTTTCATAACTTGCACTTTAACACTGTGAAAAATTAAAAC
* * *
15533047 CAATGTAAGTTATCATGTTTCTCTGTTTTAGCAAGTTTAAAACATTGGATTCAAGATATTTAAAC
257 CAATGCAAGTTATCATGTTTCTCTGTTTGAGCAAGTTTAAAACATTGGATTCAAGATATTCAAAC
* * *** * *
15533112 TCATTTTCATTTAAAAACTTGCTAAAATAATATTTCATACTTCCAAGCTCAACTTTAGTAGAAAT
322 TCATTTTCATTTAAAAACTTGCTAAAACAATATTTCATACTTCAAAGCTCTGGTCTAGCAGAAAT
* *
15533177 GGTTTTCAAAGCAAAGCATAAAGCTTC-AAAAAATATTAAGCTTTTGAGCTTGTGCATAATATAT
387 GGTTTTCAAAGCAAAGCATAATGCTTCAAAAAAACATTAAGCTTTTGAGCTTGTGCATAATATAT
* * * * **
15533241 AAAAATAAGTTAGCACGCAGTTAATCAGATCAAGTG
452 AAAAACAAGTTAGCACACAGTTAATCACATCAGGCA
* * * *
15533277 CCAATAACGATTTCGTAAATGATATCCAAATATCAATAGTATCCCACAAATTCCTTAGAACATTC
1 CCAATAACGATTTCGCAAATGATATCCAAATATCAACAGCATCCCACAAATTCCTTAGAGCATTC
* * * * * *
15533342 AGGAATCCCCATAAAAAATGCCTCTAGAGCAGAAACGTGATGAAAAATTAAAATTGCACAAACGG
66 ATGAATCCCCTTAAAAAATGCCTCTAGAGCAGAAACGCGATGAAAAATTAAAATCGTACAAATGG
* * *
15533407 TTTTTATATCACAATTTGAAATCGTGCAAATGGTTTTCATGCTCGTAATCACACAATAACAAAAT
131 TTTTTATATCACAATTTGAAATCGTGCAAATGGTTTTCAT-C-CATAATCACTCAAAAACAAAAT
*
15533472 TTTGACATTTTGAGCTCCAAAATCTTTCATAACTTGCACTTTAACACTGTGAAAAATTAAAATCA
194 TTTGACATTTTGAGCTCCAAAATCTTTCATAACTTGCACTTTAACACTGTGAAAAATTAAAACCA
* * *
15533537 ATACAAGTTATCATGTTTC-CTTTTTGAGCATGTTTAAAACATTGGATTCAAGATATTCAAACTC
259 ATGCAAGTTATCATGTTTCTCTGTTTGAGCAAGTTTAAAACATTGGATTCAAGATATTCAAACTC
* *
15533601 ATTTTCATTTAAAAACTTACTAAAACAATATTTCAAACTTCAAAGCTCTGGTCTAGCAGAAATGG
324 ATTTTCATTTAAAAACTTGCTAAAACAATATTTCATACTTCAAAGCTCTGGTCTAGCAGAAATGG
* * * *
15533666 TTTTCAAA-CCAA-CATAATGCTTCAAAAAAACATTAAGCTTTTCACCTTATGCATAATATATAA
389 TTTTCAAAGCAAAGCATAATGCTTCAAAAAAACATTAAGCTTTTGAGCTTGTGCATAATATATAA
* *
15533729 AAACAAGTTAACACACAGTTAATCACATCTGGCA
454 AAACAAGTTAGCACACAGTTAATCACATCAGGCA
*
15533763 CCAATAACGATTTCGCAAATGATATCTAAATATCAACAGCATCCCACAAATTCCTTAGAGCATTC
1 CCAATAACGATTTCGCAAATGATATCCAAATATCAACAGCATCCCACAAATTCCTTAGAGCATTC
** * * * ** * *
15533828 ATGAATCCCCCGAAAAAATGCTTCTATAGTAGAAACGCGACCAAAAATTAAAATTGTGCAAATGG
66 ATGAATCCCCTTAAAAAATGCCTCTAGAGCAGAAACGCGATGAAAAATTAAAATCGTACAAATGG
* **
15533893 ---CT-T-T--C-A--T---A-C---C----------CA--C--AATAGCTCAAAAACAAAATTT
131 TTTTTATATCACAATTTGAAATCGTGCAAATGGTTTTCATCCATAATCACTCAAAAACAAAATTT
* * * * * *
15533927 TGACATTTTGAGCTCCAAAATCCTCCATATCTTGCATTTTAACATTCTGAAAAATTAAAACCAAT
196 TGACATTTTGAGCTCCAAAATCTTTCATAACTTGCACTTTAACACTGTGAAAAATTAAAACCAAT
*
15533992 GCAAGTTATCATGTTTCTCTGTTTAAGCAAGTTTAAAACATTGGATTCAAGATATTCAAACTCAT
261 GCAAGTTATCATGTTTCTCTGTTTGAGCAAGTTTAAAACATTGGATTCAAGATATTCAAACTCAT
* * * * *
15534057 TTTCATTTAAACACTTGTTGAAAACAATATTTCATAGTTCAAAGCTCGGGTCTAGCAGAATTGGT
326 TTTCATTTAAAAACTTGCT-AAAACAATATTTCATACTTCAAAGCTCTGGTCTAGCAGAAATGGT
* * * *
15534122 TTTCAAAGCAAAGCATAATGC-T-ATGAAAAACTTTAAGCTTTTAAGCTTGTTCATAAATATATA
390 TTTCAAAGCAAAGCATAATGCTTCA-AAAAAACATTAAGCTTTTGAGCTTGTGCAT-AATATATA
*
15534185 AAAACAAGTTAGCACACACAGTTAATCACATCAGGTA
453 AAAACAAGTTAG--CACACAGTTAATCACATCAGGCA
* * * *
15534222 -CAATAACAATTTC-AAAATGATATCCAAATAT-AAGCAGTATCCCACAAAATCCTTAGAGCATT
1 CCAATAACGATTTCGCAAATGATATCCAAATATCAA-CAGCATCCCACAAATTCCTTAGAGCATT
* * * * ** *
15534284 CATGAATCCCTTTAAATAATG-CGCTAGA-C-G-AA----AT-CAAAATTAAAATCACACAAATA
65 CATGAATCCCCTTAAAAAATGCCTCTAGAGCAGAAACGCGATGAAAAATTAAAATCGTACAAATG
* *
15534340 G-ATTTATGTCACAATTTGAAATCGTGCAAATGGTTTTCACTCCCATAATCACTCAAAAACAAAA
130 GTTTTTATATCACAATTTGAAATCGTGCAAATGGTTTTCA-T-CCATAATCACTCAAAAACAAAA
* * *
15534404 TTTTGACATTTTGAGCTCTAAAATCCTCCATAACTTGCACTTTAACACTGTGAAAAATTAAAACC
193 TTTTGACATTTTGAGCTCCAAAATCTTTCATAACTTGCACTTTAACACTGTGAAAAATTAAAACC
* * * *
15534469 AATGCAAGCTATAATGTTTCTCTGTTTGAGCAAGTTTAAAACATTAGATTCAAGATATTCAAGCT
258 AATGCAAGTTATCATGTTTCTCTGTTTGAGCAAGTTTAAAACATTGGATTCAAGATATTCAAACT
* ** *
15534534 CATTTCCATTTAAAAACTTTTTAAAACAATATTTCATACTTCAAAGCTC-GGCTTTAGCAGAAAT
323 CATTTTCATTTAAAAACTTGCTAAAACAATATTTCATACTTCAAAGCTCTGG-TCTAGCAGAAAT
* * * *
15534598 GGTTTTCAAAGCAAAGCATAAAGCTAC-GAAAAAC----AG-TTTTGAGCTTGTACATAATATAT
387 GGTTTTCAAAGCAAAGCATAATGCTTCAAAAAAACATTAAGCTTTTGAGCTTGTGCATAATATAT
*
15534657 AAAAACAAGTTAGCACACAGTTAATCACATCAGGCG
452 AAAAACAAGTTAGCACACAGTTAATCACATCAGGCA
* * * * *
15534693 CCAATAATGATTTCACAAATGATATCCAAATATCAGCAGGCAT--CACACATTCTTTAGAGC-TT
1 CCAATAACGATTTCGCAAATGATATCCAAATATCAACA-GCATCCCACAAATTCCTTAGAGCATT
* * * * ** * *
15534755 CATAAATCCCCTTAAAAAATGCGC-CTGGAGCAAAAACGCAATGAAATGTTAAAATCGTTCAGAT
65 CATGAATCCCCTTAAAAAATGC-CTCTAGAGCAGAAACGCGATGAAAAATTAAAATCGTACAAAT
* * * * *
15534819 GGTTTTTGTATCACAATTTGAAATCATGGAAATGGTTTTCATTCCTATAATCGCTCAAAACCAAA
129 GGTTTTTATATCACAATTTGAAATCGTGCAAATGGTTTTCA-TCC-ATAATCACTCAAAAACAAA
* * * * *
15534884 ATTTTGACATTTTGGGCTCCAAAATCCTTCGTAACTCGTACTTTAACACTGTGAAAAATTAAAAC
192 ATTTTGACATTTTGAGCTCCAAAATCTTTCATAACTTGCACTTTAACACTGTGAAAAATTAAAAC
* * * *
15534949 CAATCCAAGTTATCATATTTCTCTGGTTGAGCAAGTTTAAAACATTGGATTTAAGATATTCAAAC
257 CAATGCAAGTTATCATGTTTCTCTGTTTGAGCAAGTTTAAAACATTGGATTCAAGATATTCAAAC
* * *
15535014 TCATTTCCATTTAAAAACTTGCTAAAACAATATTTCATACTTCAAATCTCTGCTCTAGCAGAAAA
322 TCATTTTCATTTAAAAACTTGCTAAAACAATATTTCATACTTCAAAGCTCTGGTCTAGCAG-AAA
* * *
15535079 TGATTTTCAAAGCAAAACATAATGCTTCAAAAAAACATTAAGCTTTTGAGCTTGTGCATATTATA
386 TGGTTTTCAAAGCAAAGCATAATGCTTCAAAAAAACATTAAGCTTTTGAGCTTGTGCATAATATA
* * *
15535144 CAAAAACAAGTTAGTACATAGTTAATCACATCAGGC-
451 TAAAAACAAGTTAGCACACAGTTAATCACATCAGGCA
* *
15535180 CCAATAACGATTTTGCAAATAATATCCAAATA
1 CCAATAACGATTTCGCAAATGATATCCAAATA
15535212 AATCGATAGT
Statistics
Matches: 1641, Mismatches: 224, Indels: 143
0.82 0.11 0.07
Matches are distributed among these distances:
448 17 0.01
449 1 0.00
450 1 0.00
451 1 0.00
452 1 0.00
453 93 0.06
454 62 0.04
455 51 0.03
456 34 0.02
457 87 0.05
458 12 0.01
459 23 0.01
460 1 0.00
461 1 0.00
464 1 0.00
469 1 0.00
471 41 0.02
472 30 0.02
473 42 0.03
474 20 0.01
475 4 0.00
476 1 0.00
478 4 0.00
479 69 0.04
480 172 0.10
481 222 0.14
482 29 0.02
483 7 0.00
485 10 0.01
486 177 0.11
487 135 0.08
488 108 0.07
489 121 0.07
490 62 0.04
ACGTcount: A:0.39, C:0.18, G:0.12, T:0.31
Consensus pattern (487 bp):
CCAATAACGATTTCGCAAATGATATCCAAATATCAACAGCATCCCACAAATTCCTTAGAGCATTC
ATGAATCCCCTTAAAAAATGCCTCTAGAGCAGAAACGCGATGAAAAATTAAAATCGTACAAATGG
TTTTTATATCACAATTTGAAATCGTGCAAATGGTTTTCATCCATAATCACTCAAAAACAAAATTT
TGACATTTTGAGCTCCAAAATCTTTCATAACTTGCACTTTAACACTGTGAAAAATTAAAACCAAT
GCAAGTTATCATGTTTCTCTGTTTGAGCAAGTTTAAAACATTGGATTCAAGATATTCAAACTCAT
TTTCATTTAAAAACTTGCTAAAACAATATTTCATACTTCAAAGCTCTGGTCTAGCAGAAATGGTT
TTCAAAGCAAAGCATAATGCTTCAAAAAAACATTAAGCTTTTGAGCTTGTGCATAATATATAAAA
ACAAGTTAGCACACAGTTAATCACATCAGGCA
Found at i:15535273 original size:19 final size:20
Alignment explanation
Indices: 15535233--15535283 Score: 68
Period size: 19 Copynumber: 2.5 Consensus size: 20
15535223 TACGTTATAA
15535233 AATAATATTTTATTAATTTATT
1 AATAATA-TTTATTAA-TTATT
15535255 AATAATATTTATTAA-TATT
1 AATAATATTTATTAATTATT
*
15535274 AATTATATTT
1 AATAATATTT
15535284 TATTTGTTAC
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
19 13 0.46
21 8 0.29
22 7 0.25
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (20 bp):
AATAATATTTATTAATTATT
Found at i:15535665 original size:14 final size:14
Alignment explanation
Indices: 15535646--15535678 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
15535636 TATTATGATT
15535646 TATTAATAATATAA
1 TATTAATAATATAA
*
15535660 TATTAATAATATTA
1 TATTAATAATATAA
15535674 TATTA
1 TATTA
15535679 TTTTAAACTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (14 bp):
TATTAATAATATAA
Found at i:15535674 original size:26 final size:26
Alignment explanation
Indices: 15535625--15535674 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
15535615 ATTATTAAAT
* *
15535625 ATAATATAATATATTATGATTTATTA
1 ATAATATAATATATAATAATTTATTA
15535651 ATAATATAATAT-TAATAATATTAT
1 ATAATATAATATATAATAAT-TTAT
15535675 ATTATTTTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 5 0.24
26 16 0.76
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (26 bp):
ATAATATAATATATAATAATTTATTA
Found at i:15535953 original size:19 final size:20
Alignment explanation
Indices: 15535913--15535953 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
15535903 TAAATAAATT
* *
15535913 TTTTTAAAATTTCTTATTAA
1 TTTTTAAAATTTCTAATAAA
15535933 TTTTTAAAATTT-TAATAAA
1 TTTTTAAAATTTCTAATAAA
15535952 TT
1 TT
15535954 AGTATTAACT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 7 0.37
20 12 0.63
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (20 bp):
TTTTTAAAATTTCTAATAAA
Found at i:15536648 original size:181 final size:180
Alignment explanation
Indices: 15536278--15536677 Score: 418
Period size: 181 Copynumber: 2.2 Consensus size: 180
15536268 TAAATCTCTA
* * * *
15536278 ACTTA-TAATTTTTAAGAATAATTAATAAATTAGTATTA-TTTATTTCAAATAAACTTGTGTGAA
1 ACTTATTAA-TTTTAAGAAT-ATTAATAAATTAATATTATTTTAGTTCAAATAAACTTGTATAAA
* * *
15536341 TAGAAATAATTGTTTTATGACAAAAGAAAAGATCATAAAGATTTGAAATATATAATTGTTCAAAT
64 TAAAAATAATTGGTTTATGACAAAAGAAAAGATCATAAAGATTTGAAATAGATAATTGTTCAAAT
* **
15536406 AGTAATAACTATTTGAATTTGCTCGTTAAAAAAATTTATTATTTAAATTTTTT
129 AGTAATAACTAGTTGAA-TTGCTCGTTAAAAAAATTTATTATTTAAAAATTTT
* * * *
15536459 ACTTATTAATTTTAAAAATATTAATAAATAAATATTATTTTAGTTCGAATAAGC-TGTATAAATA
1 ACTTATTAATTTTAAGAATATTAATAAATTAATATTATTTTAGTTCAAATAAACTTGTATAAAT-
* ** * * **
15536523 AAAAATAATTGGTTTATGACAAAATAAATTATCGTAACGATTTGAAATAGGATAATTGTTTTAAT
65 AAAAATAATTGGTTTATGACAAAAGAAAAGATCATAAAGATTTGAAATA-GATAATTGTTCAAAT
* * *
15536588 ATTCATAACT-GTTGAA-TG-T-GTTCAAAAACATATTTATTTTTTTAAAAATTTT
129 AGTAATAACTAGTTGAATTGCTCGTT-AAAAA-A-ATTTA-TTATTTAAAAATTTT
* * * *
15536640 ATTTATTAATTTTTAGAATTTTAATAAATTTATATTAT
1 ACTTATTAATTTTAAGAATATTAATAAATTAATATTAT
15536678 AAATGATATT
Statistics
Matches: 181, Mismatches: 30, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
177 3 0.02
178 6 0.03
179 3 0.02
180 28 0.15
181 118 0.65
182 23 0.13
ACGTcount: A:0.43, C:0.05, G:0.09, T:0.43
Consensus pattern (180 bp):
ACTTATTAATTTTAAGAATATTAATAAATTAATATTATTTTAGTTCAAATAAACTTGTATAAATA
AAAATAATTGGTTTATGACAAAAGAAAAGATCATAAAGATTTGAAATAGATAATTGTTCAAATAG
TAATAACTAGTTGAATTGCTCGTTAAAAAAATTTATTATTTAAAAATTTT
Found at i:15536896 original size:20 final size:19
Alignment explanation
Indices: 15536856--15536900 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
15536846 TATAAACTAT
15536856 ATAAT-TAATATTTATTAA
1 ATAATATAATATTTATTAA
15536874 ATATATATAATATTTA-TATA
1 ATA-ATATAATATTTATTA-A
15536894 ATAATAT
1 ATAATAT
15536901 TTAAAAGGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
18 3 0.12
19 8 0.33
20 13 0.54
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
ATAATATAATATTTATTAA
Found at i:15536899 original size:14 final size:15
Alignment explanation
Indices: 15536874--15536903 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
15536864 TATTTATTAA
15536874 ATATATATAATATTT
1 ATATATATAATATTT
15536889 ATATA-ATAATATTT
1 ATATATATAATATTT
15536903 A
1 A
15536904 AAAGGATTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.67
15 5 0.33
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
ATATATATAATATTT
Found at i:15537943 original size:16 final size:15
Alignment explanation
Indices: 15537924--15537980 Score: 51
Period size: 16 Copynumber: 3.5 Consensus size: 15
15537914 TTTTATAAGC
*
15537924 ATATTTATTTAAATTA
1 ATATTT-TTAAAATTA
* *
15537940 ATATCATTAAAAATTA
1 ATAT-TTTTAAAATTA
15537956 ATATATTTATAAAATTA
1 ATAT-TTT-TAAAATTA
15537973 ATATTTTT
1 ATATTTTT
15537981 TAGTATTTAT
Statistics
Matches: 33, Mismatches: 6, Indels: 5
0.75 0.14 0.11
Matches are distributed among these distances:
15 1 0.03
16 20 0.61
17 12 0.36
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (15 bp):
ATATTTTTAAAATTA
Found at i:15538181 original size:21 final size:22
Alignment explanation
Indices: 15538157--15538207 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
15538147 ATTAGTTAAA
*
15538157 TAATTATACTA-ATTATAATTT
1 TAATTATAATACATTATAATTT
*
15538178 TAATTA-AATACATTATATTTT
1 TAATTATAATACATTATAATTT
*
15538199 TAGTTATAA
1 TAATTATAA
15538208 CAATTAAACA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
20 3 0.12
21 20 0.80
22 2 0.08
ACGTcount: A:0.43, C:0.04, G:0.02, T:0.51
Consensus pattern (22 bp):
TAATTATAATACATTATAATTT
Found at i:15538213 original size:21 final size:20
Alignment explanation
Indices: 15538157--15538213 Score: 51
Period size: 21 Copynumber: 2.7 Consensus size: 20
15538147 ATTAGTTAAA
*
15538157 TAATTATACTAATTATAATTT
1 TAATTAAAC-AATTATAATTT
* *
15538178 TAATTAAATACATTATATTTT
1 TAATTAAACA-ATTATAATTT
*
15538199 TAGTTATAACAATTA
1 TAATTA-AACAATTA
15538214 AACAATTGTT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
20 1 0.03
21 25 0.86
22 3 0.10
ACGTcount: A:0.44, C:0.05, G:0.02, T:0.49
Consensus pattern (20 bp):
TAATTAAACAATTATAATTT
Found at i:15538452 original size:32 final size:32
Alignment explanation
Indices: 15538389--15538485 Score: 86
Period size: 34 Copynumber: 2.8 Consensus size: 32
15538379 TATTATTATT
15538389 TTAAACTAATACTATTAATTGTTTATTATTTAGAATAA
1 TTAAACTAATA--ATT-ATT-TTTA--ATTTAGAATAA
* *
15538427 TTAAACTAATAATTATTTTTAATTTATACTAA
1 TTAAACTAATAATTATTTTTAATTTAGAATAA
*
15538459 TTATTACTAATTAATTATTTATTAATT
1 TTA-AACTAA-TAATTATTT-TTAATT
15538486 AATATTATTG
Statistics
Matches: 53, Mismatches: 3, Indels: 9
0.82 0.05 0.14
Matches are distributed among these distances:
32 12 0.23
33 5 0.09
34 13 0.25
35 9 0.17
36 3 0.06
38 11 0.21
ACGTcount: A:0.41, C:0.05, G:0.02, T:0.52
Consensus pattern (32 bp):
TTAAACTAATAATTATTTTTAATTTAGAATAA
Found at i:15538693 original size:26 final size:27
Alignment explanation
Indices: 15538657--15538710 Score: 83
Period size: 26 Copynumber: 2.0 Consensus size: 27
15538647 AATTTAATAA
* *
15538657 TAATAATATTATTATTATCA-ATTTAT
1 TAATAATATTAATATTATAATATTTAT
15538683 TAATAATATTAATATTATAATATTTAT
1 TAATAATATTAATATTATAATATTTAT
15538710 T
1 T
15538711 TGATTAGACT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 18 0.72
27 7 0.28
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (27 bp):
TAATAATATTAATATTATAATATTTAT
Found at i:15538811 original size:34 final size:34
Alignment explanation
Indices: 15538768--15538834 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 34
15538758 AATATTATAT
*
15538768 TATTTAATATCTTACTATTAATTAG-ATAATTGTA
1 TATTTAATATCTTAATATTAA-TAGAATAATTGTA
*
15538802 TATTTAATATTTTAATATTAATAGAATAATTGT
1 TATTTAATATCTTAATATTAATAGAATAATTGT
15538835 TCAAATAAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 3 0.10
34 27 0.90
ACGTcount: A:0.40, C:0.03, G:0.06, T:0.51
Consensus pattern (34 bp):
TATTTAATATCTTAATATTAATAGAATAATTGTA
Found at i:15539412 original size:9 final size:9
Alignment explanation
Indices: 15539343--15539439 Score: 51
Period size: 9 Copynumber: 10.8 Consensus size: 9
15539333 TGATATAATT
15539343 ATTATATTAA
1 ATTATATT-A
*
15539353 ATTAAATTA
1 ATTATATTA
*
15539362 ATTATAATA
1 ATTATATTA
*
15539371 TTTAATATT-
1 ATT-ATATTA
*
15539380 ATTAGTTAATA
1 ATTA--TATTA
* *
15539391 ATTAGATTT
1 ATTATATTA
15539400 ATTATATTA
1 ATTATATTA
*
15539409 ATTATAATA
1 ATTATATTA
15539418 CA--AT-TT-
1 -ATTATATTA
15539424 ATTATATTA
1 ATTATATTA
15539433 ATTATAT
1 ATTATAT
15539440 GGTCTTATTA
Statistics
Matches: 64, Mismatches: 14, Indels: 19
0.66 0.14 0.20
Matches are distributed among these distances:
5 1 0.02
7 3 0.05
8 5 0.08
9 36 0.56
10 15 0.23
11 4 0.06
ACGTcount: A:0.45, C:0.01, G:0.02, T:0.52
Consensus pattern (9 bp):
ATTATATTA
Found at i:15539809 original size:10 final size:11
Alignment explanation
Indices: 15539788--15539827 Score: 50
Period size: 10 Copynumber: 3.9 Consensus size: 11
15539778 ATGTTTAACA
*
15539788 TAATTCATAAT
1 TAATTAATAAT
15539799 TAATT-ATAAT
1 TAATTAATAAT
15539809 TAATTAATAA-
1 TAATTAATAAT
15539819 T-ATTAATAA
1 TAATTAATAA
15539828 ATAAATAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
9 8 0.29
10 11 0.39
11 9 0.32
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (11 bp):
TAATTAATAAT
Found at i:15539825 original size:13 final size:14
Alignment explanation
Indices: 15539795--15539837 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
15539785 ACATAATTCA
*
15539795 TAATTAATTATAAT
1 TAATTAATAATAAT
15539809 TAATTAATAAT-AT
1 TAATTAATAATAAT
*
15539822 TAATAAATAAATAAT
1 TAATTAAT-AATAAT
15539837 T
1 T
15539838 TATATAAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.36
14 13 0.52
15 3 0.12
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (14 bp):
TAATTAATAATAAT
Found at i:15539844 original size:17 final size:17
Alignment explanation
Indices: 15539814--15539846 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
15539804 ATAATTAATT
15539814 AATAATATTAATAAATA
1 AATAATATTAATAAATA
15539831 AATAAT-TTATATAAAT
1 AATAATATTA-ATAAAT
15539847 TATTTGATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
AATAATATTAATAAATA
Found at i:15540425 original size:18 final size:19
Alignment explanation
Indices: 15540383--15540425 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 19
15540373 TATAAGTTGC
*
15540383 TATTTAGACTTAATATAAT
1 TATTTAAACTTAATATAAT
*
15540402 TA-TTAAACTTAAT-TTAT
1 TATTTAAACTTAATATAAT
15540419 TATTTAA
1 TATTTAA
15540426 TTTTTATAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
17 5 0.24
18 14 0.67
19 2 0.10
ACGTcount: A:0.42, C:0.05, G:0.02, T:0.51
Consensus pattern (19 bp):
TATTTAAACTTAATATAAT
Found at i:15542256 original size:26 final size:26
Alignment explanation
Indices: 15542220--15542272 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15542210 CCAGTCTGAT
15542220 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15542246 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15542272 C
1 C
15542273 CTAGGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15543086 original size:38 final size:37
Alignment explanation
Indices: 15543013--15543117 Score: 99
Period size: 38 Copynumber: 2.7 Consensus size: 37
15543003 TAAAAAAAAT
*
15543013 AATAAAATAA-AAAA-AAGAAAAAAATATATATATACATA
1 AATAAAATAATAAAATAA-AAAAAAA-ATATAAATACA-A
*
15543051 TATAAAATAATAATAATAAAAAAAAAATA-AAATACAA
1 AATAAAATAATAA-AATAAAAAAAAAATATAAATACAA
15543088 AATAAAAATAAATAAAAATAAAATAAAAAA
1 AAT-AAAAT-AAT-AAAATAAAA-AAAAAA
15543118 AAAGAAAAAG
Statistics
Matches: 57, Mismatches: 3, Indels: 12
0.79 0.04 0.17
Matches are distributed among these distances:
37 3 0.05
38 20 0.35
39 15 0.26
40 17 0.30
41 2 0.04
ACGTcount: A:0.77, C:0.02, G:0.01, T:0.20
Consensus pattern (37 bp):
AATAAAATAATAAAATAAAAAAAAAATATAAATACAA
Found at i:15543090 original size:32 final size:33
Alignment explanation
Indices: 15543054--15543115 Score: 99
Period size: 33 Copynumber: 1.9 Consensus size: 33
15543044 ATACATATAT
*
15543054 AAAATAATAAT-AATAAAAAAAAAATAAAATAC
1 AAAATAAAAATAAATAAAAAAAAAATAAAATAC
*
15543086 AAAATAAAAATAAATAAAAATAAAATAAAA
1 AAAATAAAAATAAATAAAAAAAAAATAAAA
15543116 AAAAAGAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
32 10 0.37
33 17 0.63
ACGTcount: A:0.81, C:0.02, G:0.00, T:0.18
Consensus pattern (33 bp):
AAAATAAAAATAAATAAAAAAAAAATAAAATAC
Found at i:15543100 original size:10 final size:10
Alignment explanation
Indices: 15542843--15543126 Score: 69
Period size: 9 Copynumber: 28.5 Consensus size: 10
15542833 GATAAATCAA
*
15542843 AAAAATAAAA
1 AAAAATAAAT
*
15542853 AAAAATCAAAC
1 AAAAAT-AAAT
15542864 AAAAATAAAT
1 AAAAATAAAT
* *
15542874 -CAGATAAAT
1 AAAAATAAAT
15542883 AATAAA-AAATT
1 AA-AAATAAA-T
*
15542894 AACAGATAAATT
1 AA-AAATAAA-T
*
15542906 AAAATTAAAT
1 AAAAATAAAT
* *
15542916 AACAGATAATT
1 AA-AAATAAAT
*
15542927 ACATAAAT-ATT
1 A-A-AAATAAAT
* *
15542938 AACAAGAAA-
1 AAAAATAAAT
*
15542947 AAAAAGAAA-
1 AAAAATAAAT
15542956 AAAAATAAA-
1 AAAAATAAAT
* *
15542965 AAAGATATAT
1 AAAAATAAAT
* * *
15542975 ACATATTAAT
1 AAAAATAAAT
15542985 AAATACATAAAT
1 AAA-A-ATAAAT
* *
15542997 CTAAGATAAA-
1 -AAAAATAAAT
15543007 AAAAAT-AAT
1 AAAAATAAAT
15543016 -AAAATAAA-
1 AAAAATAAAT
*
15543024 AAAAAGAAA-
1 AAAAATAAAT
*
15543033 AAAATATATAT
1 AAAA-ATAAAT
* * *
15543044 ATACATATAT
1 AAAAATAAAT
15543054 -AAAAT-AAT
1 AAAAATAAAT
*
15543062 AATAAT-AA-
1 AAAAATAAAT
15543070 AAAAA-AAAT
1 AAAAATAAAT
*
15543079 AAAATACAAAAT
1 AAAA-A-TAAAT
15543091 AAAAATAAAT
1 AAAAATAAAT
15543101 AAAAATAAAAT
1 AAAAAT-AAAT
* *
15543112 AAAAAAAAAG
1 AAAAATAAAT
15543122 AAAAA
1 AAAAA
15543127 GAGAAAAAAA
Statistics
Matches: 204, Mismatches: 46, Indels: 48
0.68 0.15 0.16
Matches are distributed among these distances:
8 15 0.07
9 62 0.30
10 53 0.26
11 48 0.24
12 24 0.12
13 2 0.01
ACGTcount: A:0.73, C:0.04, G:0.03, T:0.20
Consensus pattern (10 bp):
AAAAATAAAT
Found at i:15543106 original size:69 final size:69
Alignment explanation
Indices: 15542948--15543107 Score: 159
Period size: 70 Copynumber: 2.3 Consensus size: 69
15542938 AACAAGAAAA
* * * * *
15542948 AAAAGAAAAAAAATAAAAA-AGATATATACATATTAATAAATACATAAATCTAAGATAAAAAAAA
1 AAAATAAAAAAAATAAAAATAGATATATACATATTAAAAAATACATAAATCAAAAAAAAAAAAAA
*
15543012 TAAT
66 TAAC
* *
15543016 AAAATAAAAAAAAGAAAAAAATATATATATACATATATAAAATAATA-AT-AAT-AAAAAAAAAA
1 AAAAT-AAAAAAA-ATAAAAATAGATATATACATAT-TAAAA-AATACATAAATCAAAAAAAAAA
15543078 TAAAAT-AC
62 -AAAATAAC
15543086 AAAATAAAAATAAATAAAAATA
1 AAAATAAAAA-AAATAAAAATA
15543108 AAATAAAAAA
Statistics
Matches: 76, Mismatches: 9, Indels: 13
0.78 0.09 0.13
Matches are distributed among these distances:
68 4 0.05
69 20 0.26
70 21 0.28
71 21 0.28
72 6 0.08
73 4 0.05
ACGTcount: A:0.73, C:0.03, G:0.03, T:0.21
Consensus pattern (69 bp):
AAAATAAAAAAAATAAAAATAGATATATACATATTAAAAAATACATAAATCAAAAAAAAAAAAAA
TAAC
Found at i:15543116 original size:6 final size:6
Alignment explanation
Indices: 15543059--15543120 Score: 64
Period size: 6 Copynumber: 11.2 Consensus size: 6
15543049 TATATAAAAT
*
15543059 AATAAT AATAAA AA-AAA AAT-AA AATACAA AATAAA AAT--A AATAAA
1 AATAAA AATAAA AATAAA AATAAA AATA-AA AATAAA AATAAA AATAAA
15543104 AAT-AA AATAAA AA-AAA A
1 AATAAA AATAAA AATAAA A
15543121 GAAAAAGAGA
Statistics
Matches: 49, Mismatches: 1, Indels: 13
0.78 0.02 0.21
Matches are distributed among these distances:
4 4 0.08
5 19 0.39
6 20 0.41
7 6 0.12
ACGTcount: A:0.82, C:0.02, G:0.00, T:0.16
Consensus pattern (6 bp):
AATAAA
Found at i:15543133 original size:28 final size:28
Alignment explanation
Indices: 15543059--15543142 Score: 84
Period size: 28 Copynumber: 3.0 Consensus size: 28
15543049 TATATAAAAT
15543059 AATAATAATAAAAA-AAAAATAAAATACAA
1 AATAA-AA-AAAAAGAAAAATAAAATACAA
* *
15543088 AATAAAAATAAATAAAAATAAAATA-AA
1 AATAAAAAAAAAGAAAAATAAAATACAA
*
15543115 AA-AAAAGAAAAAGAGAAAAAAAAATACA
1 AATAAAA-AAAAAGA-AAAATAAAATACA
15543143 GACTTACCCA
Statistics
Matches: 47, Mismatches: 4, Indels: 8
0.80 0.07 0.14
Matches are distributed among these distances:
26 4 0.09
27 13 0.28
28 24 0.51
29 6 0.13
ACGTcount: A:0.81, C:0.02, G:0.04, T:0.13
Consensus pattern (28 bp):
AATAAAAAAAAAGAAAAATAAAATACAA
Found at i:15543134 original size:39 final size:39
Alignment explanation
Indices: 15543054--15543140 Score: 97
Period size: 39 Copynumber: 2.3 Consensus size: 39
15543044 ATACATATAT
* * * *
15543054 AAAAT-AATAATAATAAAAAAAAAATAAAATACAAAATA
1 AAAATAAATAAAAATAAAAAAAAAATAAAAGAAAAAAGA
*
15543092 AAAATAAATAAAAATAAAATAAAAA-AAAAGAAAAAGAGA
1 AAAATAAATAAAAATAAAAAAAAAATAAAAGAAAAA-AGA
*
15543131 AAAAAAAATA
1 AAAATAAATA
15543141 CAGACTTACC
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
38 13 0.32
39 28 0.68
ACGTcount: A:0.82, C:0.01, G:0.03, T:0.14
Consensus pattern (39 bp):
AAAATAAATAAAAATAAAAAAAAAATAAAAGAAAAAAGA
Found at i:15543389 original size:40 final size:39
Alignment explanation
Indices: 15543310--15543476 Score: 248
Period size: 40 Copynumber: 4.2 Consensus size: 39
15543300 TTTTATCAAA
*
15543310 GCTCCTCTAAACAGAGGC-CAACGACTTTGAGAAAATAAATT
1 GCTCCTCTAAACAGAGGCAC-ACGACTTT--GAAAGTAAATT
15543351 GCTCCTCTAAACAGAGGCA-ACGACTTTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACACGACTTT-G-AAAGTAAATT
15543391 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCA-CACGACTTTGAAAGTAAATT
15543431 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCA-CACGACTTTGAAAGTAAATT
15543471 GCTCCT
1 GCTCCT
15543477 TGACAATCAT
Statistics
Matches: 120, Mismatches: 2, Indels: 9
0.92 0.02 0.07
Matches are distributed among these distances:
39 1 0.01
40 92 0.77
41 19 0.16
42 8 0.07
ACGTcount: A:0.35, C:0.24, G:0.18, T:0.23
Consensus pattern (39 bp):
GCTCCTCTAAACAGAGGCACACGACTTTGAAAGTAAATT
Found at i:15544472 original size:8 final size:8
Alignment explanation
Indices: 15544460--15544556 Score: 108
Period size: 8 Copynumber: 11.6 Consensus size: 8
15544450 TGAGTCCTCC
*
15544460 TTTTTCAC
1 TTTTTCAT
15544468 TTTTTC--
1 TTTTTCAT
15544474 TTTTTCAT
1 TTTTTCAT
*
15544482 TTTTTTAT
1 TTTTTCAT
15544490 TTTTTCAT
1 TTTTTCAT
15544498 TTTTTCAT
1 TTTTTCAT
15544506 TTTTTCATT
1 TTTTTCA-T
15544515 TTTTCATCAT
1 TTTT--TCAT
15544525 TTTTTCATTT
1 TTTTTCA--T
15544535 TTTTTCATT
1 TTTTTCA-T
15544544 TTTTTCAT
1 TTTTTCAT
15544552 TTTTT
1 TTTTT
15544557 TCAAGCATAG
Statistics
Matches: 80, Mismatches: 2, Indels: 14
0.83 0.02 0.15
Matches are distributed among these distances:
6 6 0.08
8 44 0.55
9 14 0.17
10 13 0.16
11 3 0.04
ACGTcount: A:0.11, C:0.12, G:0.00, T:0.76
Consensus pattern (8 bp):
TTTTTCAT
Found at i:15544493 original size:16 final size:17
Alignment explanation
Indices: 15544474--15544559 Score: 122
Period size: 19 Copynumber: 4.9 Consensus size: 17
15544464 TCACTTTTTC
15544474 TTTTTCATTTTTTT-AT
1 TTTTTCATTTTTTTCAT
15544490 TTTTTCA-TTTTTTCAT
1 TTTTTCATTTTTTTCAT
15544506 TTTTTCATTTTTTCATCAT
1 TTTTTCATTTTTT--TCAT
15544525 TTTTTCATTTTTTTTCATT
1 TTTTTCA-TTTTTTTCA-T
15544544 TTTTTCATTTTTTTCA
1 TTTTTCATTTTTTTCA
15544560 AGCATAGTAT
Statistics
Matches: 64, Mismatches: 0, Indels: 10
0.86 0.00 0.14
Matches are distributed among these distances:
15 6 0.09
16 16 0.25
17 5 0.08
18 12 0.19
19 19 0.30
20 6 0.09
ACGTcount: A:0.13, C:0.12, G:0.00, T:0.76
Consensus pattern (17 bp):
TTTTTCATTTTTTTCAT
Found at i:15544518 original size:46 final size:45
Alignment explanation
Indices: 15544460--15544556 Score: 117
Period size: 46 Copynumber: 2.1 Consensus size: 45
15544450 TGAGTCCTCC
*
15544460 TTTTTCACTTTTTCTTTTTCATTTTTT-TATTTTTTCA-TTTTTTCAT
1 TTTTTCACTTTTTC---ATCATTTTTTATATTTTTTCATTTTTTTCAT
* *
15544506 TTTTTCATTTTTTCATCATTTTTTCATTTTTTTTCATTTTTTTCAT
1 TTTTTCACTTTTTCATCATTTTTT-ATATTTTTTCATTTTTTTCAT
15544552 TTTTT
1 TTTTT
15544557 TCAAGCATAG
Statistics
Matches: 45, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
43 9 0.20
45 9 0.20
46 27 0.60
ACGTcount: A:0.11, C:0.12, G:0.00, T:0.76
Consensus pattern (45 bp):
TTTTTCACTTTTTCATCATTTTTTATATTTTTTCATTTTTTTCAT
Found at i:15544526 original size:11 final size:9
Alignment explanation
Indices: 15544474--15544559 Score: 110
Period size: 8 Copynumber: 9.8 Consensus size: 9
15544464 TCACTTTTTC
15544474 TTTTTCATT
1 TTTTTCATT
15544483 TTTTT-A-T
1 TTTTTCATT
15544490 TTTTTCA-T
1 TTTTTCATT
15544498 TTTTTCA-T
1 TTTTTCATT
15544506 TTTTTCA-T
1 TTTTTCATT
15544514 TTTTTCATCAT
1 TTTTTCAT--T
15544525 TTTTTCATTT
1 TTTTTCA-TT
15544535 TTTTTCATT
1 TTTTTCATT
15544544 TTTTTCATT
1 TTTTTCATT
15544553 TTTTTCA
1 TTTTTCA
15544560 AGCATAGTAT
Statistics
Matches: 72, Mismatches: 0, Indels: 10
0.88 0.00 0.12
Matches are distributed among these distances:
7 6 0.08
8 26 0.36
9 23 0.32
10 8 0.11
11 8 0.11
12 1 0.01
ACGTcount: A:0.13, C:0.12, G:0.00, T:0.76
Consensus pattern (9 bp):
TTTTTCATT
Found at i:15544532 original size:27 final size:26
Alignment explanation
Indices: 15544474--15544556 Score: 118
Period size: 27 Copynumber: 3.2 Consensus size: 26
15544464 TCACTTTTTC
15544474 TTTTTCATTTTTTT-A-TTTTTTCAT
1 TTTTTCATTTTTTTCATTTTTTTCAT
15544498 TTTTTCA-TTTTTTCATTTTTTCATCAT
1 TTTTTCATTTTTTTCATTTTTT--TCAT
15544525 TTTTTCATTTTTTTTCATTTTTTTCAT
1 TTTTTCA-TTTTTTTCATTTTTTTCAT
15544552 TTTTT
1 TTTTT
15544557 TCAAGCATAG
Statistics
Matches: 53, Mismatches: 0, Indels: 9
0.85 0.00 0.15
Matches are distributed among these distances:
23 6 0.11
24 8 0.15
25 5 0.09
27 20 0.38
29 14 0.26
ACGTcount: A:0.12, C:0.11, G:0.00, T:0.77
Consensus pattern (26 bp):
TTTTTCATTTTTTTCATTTTTTTCAT
Found at i:15553128 original size:58 final size:59
Alignment explanation
Indices: 15552921--15553137 Score: 311
Period size: 57 Copynumber: 3.8 Consensus size: 59
15552911 GTTCTTGTGC
* *
15552921 AAGGAAATTTGATACTTTCAACTTTTCCCCAAAAATA--TTTTTTGAAAATTTATTTTT
1 AAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGGAAATTTATTTTT
* ***
15552978 AAGGAAAATTGATACTTTCAACTTTTCCTCAAAAA-CCCTTTTTT-GAAATTCTA-TTTT
1 AAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGGAAATT-TATTTTT
* *
15553035 AAGGAAAATTGACACTTTCAACTTGTCCCCAAAAATATTTTTTTTGGAAATTTATTTTT
1 AAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGGAAATTTATTTTT
15553094 AAGGAAAATTGATACTTTCAAC-TTTCCCCAAAAATATTTTTTTT
1 AAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTT
15553138 TAATTTTATT
Statistics
Matches: 142, Mismatches: 12, Indels: 11
0.86 0.07 0.07
Matches are distributed among these distances:
57 74 0.52
58 37 0.26
59 31 0.22
ACGTcount: A:0.35, C:0.15, G:0.08, T:0.43
Consensus pattern (59 bp):
AAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGGAAATTTATTTTT
Found at i:15553137 original size:116 final size:114
Alignment explanation
Indices: 15552921--15553127 Score: 335
Period size: 116 Copynumber: 1.8 Consensus size: 114
15552911 GTTCTTGTGC
* * *
15552921 AAGGAAATTTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGAAAATTTATTTTTAAGGAAAA
1 AAGGAAAATTGACACTTTCAACTTGTCCCCAAAAATATTTTTTGAAAATTTATTTTTAAGGAAAA
* *
15552986 TTGATACTTTCAACTTTTCCTCAAAAACCCTTTTTTGAAATTCTATTTT
66 TTGATACTTTCAACTTTTCCCCAAAAAACCTTTTTTGAAATTCTATTTT
*
15553035 AAGGAAAATTGACACTTTCAACTTGTCCCCAAAAATATTTTTTTTGGAAATTTATTTTTAAGGAA
1 AAGGAAAATTGACACTTTCAACTTGTCCCCAAAAATA--TTTTTTGAAAATTTATTTTTAAGGAA
15553100 AATTGATACTTTCAAC-TTTCCCCAAAAA
64 AATTGATACTTTCAACTTTTCCCCAAAAA
15553128 TATTTTTTTT
Statistics
Matches: 86, Mismatches: 5, Indels: 3
0.91 0.05 0.03
Matches are distributed among these distances:
114 34 0.40
115 11 0.13
116 41 0.48
ACGTcount: A:0.36, C:0.15, G:0.08, T:0.41
Consensus pattern (114 bp):
AAGGAAAATTGACACTTTCAACTTGTCCCCAAAAATATTTTTTGAAAATTTATTTTTAAGGAAAA
TTGATACTTTCAACTTTTCCCCAAAAAACCTTTTTTGAAATTCTATTTT
Found at i:15554193 original size:22 final size:21
Alignment explanation
Indices: 15554168--15554235 Score: 68
Period size: 22 Copynumber: 3.1 Consensus size: 21
15554158 AAAATAAATA
15554168 AGATAAATTAGAAAAAATTAAC
1 AGATAAATTA-AAAAAATTAAC
15554190 AGATAAATTAAAATTAAA-TAAC
1 AGATAAATTAAAA--AAATTAAC
*
15554212 AGAT-AATTACATAAATATTAAC
1 AGATAAATTA-A-AAAAATTAAC
15554234 AG
1 AG
15554236 GAAAAAAAGA
Statistics
Matches: 40, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
21 10 0.25
22 25 0.62
23 5 0.12
ACGTcount: A:0.60, C:0.06, G:0.07, T:0.26
Consensus pattern (21 bp):
AGATAAATTAAAAAAATTAAC
Found at i:15554394 original size:6 final size:6
Alignment explanation
Indices: 15554357--15554411 Score: 67
Period size: 6 Copynumber: 9.2 Consensus size: 6
15554347 TATATAAAAT
* * *
15554357 AATAAT AATAAA AATAAA AATAAA ATACAAA AAT-AA AATCAA AATAAA
1 AATAAA AATAAA AATAAA AATAAA A-ATAAA AATAAA AATAAA AATAAA
15554405 AATAAA A
1 AATAAA A
15554412 TGAAGAGAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
5 5 0.12
6 33 0.77
7 5 0.12
ACGTcount: A:0.78, C:0.04, G:0.00, T:0.18
Consensus pattern (6 bp):
AATAAA
Found at i:15554422 original size:17 final size:17
Alignment explanation
Indices: 15554385--15554439 Score: 58
Period size: 17 Copynumber: 3.3 Consensus size: 17
15554375 AATAAAATAC
* * *
15554385 AAAAATAAAATCAAAAT
1 AAAAATAAAATGAAGAG
15554402 AAAAATAAAATGAAGAG
1 AAAAATAAAATGAAGAG
* *
15554419 AAAAAGAAAAAG-AGAG
1 AAAAATAAAATGAAGAG
15554435 AAAAA
1 AAAAA
15554440 AATACAGGCT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
16 9 0.27
17 24 0.73
ACGTcount: A:0.76, C:0.02, G:0.13, T:0.09
Consensus pattern (17 bp):
AAAAATAAAATGAAGAG
Found at i:15555451 original size:26 final size:26
Alignment explanation
Indices: 15555422--15555474 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15555412 CTGGTCTGAT
*
15555422 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
15555448 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15555474 C
1 C
15555475 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:15555601 original size:184 final size:184
Alignment explanation
Indices: 15555267--15555815 Score: 595
Period size: 184 Copynumber: 3.0 Consensus size: 184
15555257 GATGGGGCTC
* * * * * *
15555267 AGACATGGAATGAACTCCCTATGCCTAAGCCAACCTACAAAAC-AGGCGTGCGGGCGCTCAACC-
1 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-GCATGCGGACGCTCAGCCA
* * * * * *
15555330 GATCGGAGAGGCAGAATGCGTAAGCCAAGGATCAGCCCGGTCCCTCCTGCGTGCTG-CTGATCCT
65 GCT-GGAGAGGCAGAATGCGTAAGTCGAGGATCGGCCCGATCCCCCCTGCGTGCTGTC-GATCCT
* * *** * **
15555394 GTTACTGCAACCCTTGGTCTGGTCTGATCTTAGACTAGGAATGAACTCTGTATGCTT
128 GCTACCGCAACCCTCAATCTGGTCCGATCTTAGACTAGGAATGAACTCCATATGCTT
* * * * ** * *
15555451 AGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTTAGTCA
1 AGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGACGCTCAGCCA
* * * *
15555515 GTTGGAGAGGCAAAATACGCAAGTCGAGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTGC
65 GCTGGAGAGGCAGAATGCGTAAGTCGAGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTGC
* *
15555580 TACCGTAACCCTCAATCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTT
130 TACCGCAACCCTCAATCTGGTCCGATCTTAGACTAGGAATGAACTCCATATGCTT
*
15555635 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGACGCTCAGCCGG
1 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGACGCTCAGCCAG
* * * **
15555700 CTGGAGAGGCAGAATGCGTAAGTCGGGGATCGACCCGAT-CCCCCTACGTGCTGTCGATCCCACT
66 CTGGAGAGGCAGAATGCGTAAGTCGAGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCT
* * ** * * * *
15555764 GCAGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAATTCCATATGC
131 ACCGCAACCCTCAATCTGGTCCGATCTTAGACTAGGAATGAACTCCATATGC
15555816 CTAAGTCAAC
Statistics
Matches: 305, Mismatches: 55, Indels: 11
0.82 0.15 0.03
Matches are distributed among these distances:
183 67 0.22
184 233 0.76
185 5 0.02
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (184 bp):
AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGACGCTCAGCCAG
CTGGAGAGGCAGAATGCGTAAGTCGAGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCT
ACCGCAACCCTCAATCTGGTCCGATCTTAGACTAGGAATGAACTCCATATGCTT
Found at i:15555644 original size:26 final size:26
Alignment explanation
Indices: 15555606--15555658 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15555596 CTGGTCCGAT
15555606 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15555632 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
15555658 C
1 C
15555659 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15556046 original size:159 final size:156
Alignment explanation
Indices: 15555631--15556075 Score: 395
Period size: 159 Copynumber: 2.8 Consensus size: 156
15555621 AACTCCATAT
* * *
15555631 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGACGCTCAG
1 GCTTAGACAAGGAATGAACT-TGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGG-CGCTCAG
*
15555696 CCGGCTGGAGAGGCAGAATGCGTAAG-TCGGGGATCGACCCGATCCCCCTAC--GTGCTGTCGAT
64 CCGGCTGGAGAGGCAGAATGCGCAAGCT-GGGGATCGACCCGATCCCCCT-CTGGTGCTGTCGAT
**
15555758 CCCACTGCAGCAACCCTCGGTCCGATCCGA
127 CCCACTGCAGCAACCCTCAATCCGATCCGA
* ** * * * *
15555788 TCTTAGACTGGGAATGAA-TTCCATATGCCTAAGTCAACCCACGAAACGAGCGTTTG-GGCACTG
1 GCTTAGACAAGGAATGAACTT--GTATGCCTAAGCCAACCCACGAAACGAGCG--TGCGGCGCTC
* * *** * *
15555851 AGCC-GATCGGAGAGGCATAATGCGCAAGCCAAGGATCGGCCCAATCCCCCTCTGTGTGCTGTCG
62 AGCCGGCT-GGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCTCTG-GTGCTGTCG
* ** * * ** *
15555915 GTCCTGCTGCCA-CAATCCTCAATCCGGTTGGG
125 ATCCCACTG-CAGCAACCCTCAATCCGATCCGA
* * *
15555947 GCTTAGACAAGGAATGAACTTGTTATGCCTAAGCCAACCCACGAAAAGGGCGTGCGAGTGCTCAG
1 GCTTAGACAAGGAATGAACTTG-TATGCCTAAGCCAACCCACGAAACGAGCGTGCG-GCGCTCAG
* *
15556012 CCGGCTGGAGATGCAGAATGCGCAAGCTGGGGATC-ACCCCGATCCCCC-CTGCGTGCTGCCGAT
64 CCGGCTGGAGAGGCAGAATGCGCAAGCTGGGGATCGA-CCCGATCCCCCTCTG-GTGCTGTCGAT
15556075 C
127 C
15556076 TTGCTGTCAT
Statistics
Matches: 224, Mismatches: 48, Indels: 31
0.74 0.16 0.10
Matches are distributed among these distances:
156 4 0.02
157 86 0.38
158 16 0.07
159 112 0.50
160 6 0.03
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (156 bp):
GCTTAGACAAGGAATGAACTTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGCGCTCAGCC
GGCTGGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCTCTGGTGCTGTCGATCCCA
CTGCAGCAACCCTCAATCCGATCCGA
Found at i:15556866 original size:26 final size:26
Alignment explanation
Indices: 15556828--15556880 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15556818 GGCTCAAACT
*
15556828 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15556854 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
15556880 C
1 C
15556881 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:15557405 original size:159 final size:158
Alignment explanation
Indices: 15556853--15557407 Score: 485
Period size: 159 Copynumber: 3.5 Consensus size: 158
15556843 AACTCTGTAT
* ** * *
15556853 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGTGGGTGCTTAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCAGGCGCTCAA
* * * * * *
15556918 CCGATCGGAGAGGCAGAATGCGCAAGTCAGGGATCGATCCGATCTCCTTCTGCGTGCT-ACAGGA
66 CCGGTCGGAGAGGCA-AATGCGCAAGCCGGGGATCGATCCGATCCCCCTCTGCGTGCTGTC--GA
* * *
15556982 -CCCGCTGCCACAACCCTTAGTCCAATTGGG
128 TCCCGCTGCCACAACCCTCAGTCCGACTGGG
* *
15557012 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCT-TACAGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG-TGTGCAGGCGCTCA
* * * * *
15557076 ATCGGCCGTAGAGGCAGATGCGCAAGCCGGGGATCGATCTGATCCCCC-CTGCGTGCTGTCGATC
65 ACCGGTCGGAGAGGCAAATGCGCAAGCCGGGGATCGATCCGATCCCCCTCTGCGTGCTGTCGATC
* * * ** * * * *
15557140 CTGTTGTCGTAACCTTCGGTCCGGTCT-GA
130 CCGCTGCCACAACCCTCAGTCC-GACTGGG
* ** * * ** * *
15557169 GCTTAGAC-TGGGAATGAACTCCATATGGATAAGTCAACCCACAAAACGAGCATGCAGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCAGGCGCTCA
* * * * * * * *
15557233 GCTGGTTGAAGAGGAATAATGCGCAAGCCGGGGAT-TAGCCCGGTCCCCCTCTGCGTGCTGTCGA
65 ACCGGTCGGAGAGGCA-AATGCGCAAGCCGGGGATCGA-TCCGATCCCCCTCTGCGTGCTGTCGA
*
15557297 TCCCGCTGCCACAACCCTCAGTTCGACTGGG
128 TCCCGCTGCCACAACCCTCAGTCCGACTGGG
* * * * * * *
15557328 GCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCAGGCGCTCAA
*
15557393 CCAGTCGGAGAGGCA
66 CCGGTCGGAGAGGCA
15557408 GAATACGTAA
Statistics
Matches: 304, Mismatches: 81, Indels: 22
0.75 0.20 0.05
Matches are distributed among these distances:
156 3 0.01
157 86 0.28
158 56 0.18
159 157 0.52
160 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.28, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCAGGCGCTCAA
CCGGTCGGAGAGGCAAATGCGCAAGCCGGGGATCGATCCGATCCCCCTCTGCGTGCTGTCGATCC
CGCTGCCACAACCCTCAGTCCGACTGGG
Found at i:15558128 original size:183 final size:183
Alignment explanation
Indices: 15557852--15558271 Score: 517
Period size: 183 Copynumber: 2.3 Consensus size: 183
15557842 CTGGTTCAAT
** * * * **
15557852 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGCGTGGTTGCTCAGC
1 CTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGC
* * * *
15557917 CGGCCAGAGAGGCCGATCGAGAGGCATAATGCGCAAGCCAAGGATCAG-CTCGATCCCCCTCTGC
66 CGACCAGAGAGGCAGATCGAAAGGCATAATGCGCAAGCCAAGGATCAGCCT-GATCCCCCTCTAC
* * *
15557981 GTGCT-GCCAATCCCGCTGCCGGTCTTGCTGCCACAACCTTTGGTCCAAC-AGTGG
130 GTGCTAG-CAATCCCGCTGCCGGTCCTGCTGCCACAACCCTCGGTCCAACTAG-GG
* * *
15558035 CTTAGACAAGGAATGAACTCCGTATGCCTAA-CCAACCCGTGAAATGAACGTGCGGGCGTTCAGC
1 CTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGC
* * *
15558099 CGATCGGAGAGGCTAG-TCGGAAAGGCATAATGCGCAAGCCGAGGATCAGCCTGATCCCCCTCTA
66 CGACCAGAGAGGC-AGATC-GAAAGGCATAATGCGCAAGCCAAGGATCAGCCTGATCCCCCTCTA
* * * *
15558163 TGTGCTAGCAATCCCGTTGCTGGTCCTGCTGCCACAACCCTCGGTCCAGCTAGGG
129 CGTGCTAGCAATCCCGCTGCCGGTCCTGCTGCCACAACCCTCGGTCCAACTAGGG
* * *
15558218 CTTAAACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGC
1 CTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGC
15558272 CGGTGCTCTG
Statistics
Matches: 202, Mismatches: 29, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
182 37 0.18
183 141 0.70
184 24 0.12
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (183 bp):
CTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGC
CGACCAGAGAGGCAGATCGAAAGGCATAATGCGCAAGCCAAGGATCAGCCTGATCCCCCTCTACG
TGCTAGCAATCCCGCTGCCGGTCCTGCTGCCACAACCCTCGGTCCAACTAGGG
Found at i:15558425 original size:25 final size:26
Alignment explanation
Indices: 15558388--15558439 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
15558378 CCGATTCGAT
15558388 CTTAGACACGGAATGAAC-CCGTATG
1 CTTAGACACGGAATGAACTCCGTATG
*
15558413 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACACGGAATGAACTCCGTATG
15558439 C
1 C
15558440 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 17 0.68
26 8 0.32
ACGTcount: A:0.31, C:0.23, G:0.23, T:0.23
Consensus pattern (26 bp):
CTTAGACACGGAATGAACTCCGTATG
Found at i:15558893 original size:158 final size:156
Alignment explanation
Indices: 15558413--15558913 Score: 445
Period size: 158 Copynumber: 3.2 Consensus size: 156
15558403 AACCCGTATG
* *
15558413 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGTGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * * *
15558477 CCGATCGAAGACGTAAAATGCACAAGTC-AGGGATCGACCCGATCCCCTCTGCGTGCTATCGATC
65 CCGA-CCAAGAGGCAAAATGCACAAGCCGA-GGATCG-CTCGATCCCCCCTACGTGCTACCAATC
* * * * * *
15558541 CTGCTGTCGCAACTCTCGGTCTGGTCTAAT
127 CTACTGCCACAACCCTCGGTCCGGTCTGAT
* * * * *
15558571 CTTAGACTGGGAATGAACTCCATATGCCGAAGTCAACCCACGAAACGAGCATGCGGGCACTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** * * * * * *
15558636 AGACCGAAGAGGCATAATGTGCAAGCCGGGGATTGGTCCGGTCCCCCTCTACGTGCTGCCAGTCC
66 CGACC-AAGAGGCAAAATGCACAAGCCGAGGATCGCT-CGATCCCCC-CTACGTGCTACCAATCC
* * * * * **
15558701 CACTGCCATAACCCTTGATCCGAT-TGGG
128 TACTGCCACAACCCTCGGTCCGGTCTGAT
** * *
15558729 GATAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-AGGCGTGCGGGCGCTCA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA-GCGTGCGGGCGCTCA
* * *
15558792 GCCGGCCATAGAGGCAGATTGCACAAGCCGAGGATCAGCTCGATCCCCCCTACGTGCTACCAATC
64 GCCGACCA-AGAGGCAAAATGCACAAGCCGAGGATC-GCTCGATCCCCCCTACGTGCTACCAATC
*
15558857 CTACTGCCACAACCCTCGGTCCGGTCCGAT
127 CTACTGCCACAACCCTCGGTCCGGTCTGAT
15558887 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
15558914 TTAGACTGGG
Statistics
Matches: 262, Mismatches: 70, Indels: 22
0.74 0.20 0.06
Matches are distributed among these distances:
157 39 0.15
158 194 0.74
159 29 0.11
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.19
Consensus pattern (156 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGACCAAGAGGCAAAATGCACAAGCCGAGGATCGCTCGATCCCCCCTACGTGCTACCAATCCTAC
TGCCACAACCCTCGGTCCGGTCTGAT
Found at i:15558916 original size:26 final size:26
Alignment explanation
Indices: 15558887--15558939 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15558877 CCGGTCCGAT
*
15558887 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15558913 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
15558939 C
1 C
15558940 CTAAGTCAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15559798 original size:26 final size:26
Alignment explanation
Indices: 15559769--15559821 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15559759 CCAGTTCGAT
* *
15559769 CTTAGACTGGGAATGAATTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15559795 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15559821 C
1 C
15559822 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15560478 original size:170 final size:171
Alignment explanation
Indices: 15560130--15560485 Score: 423
Period size: 171 Copynumber: 2.1 Consensus size: 171
15560120 CAGTCCGATG
* * * * *
15560130 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCTGAAGAGG
1 ATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGACCGAAGAGG
* * *
15560195 CATAATGCGCAAGCCAGGGATCAGCCCGATCCCCCTCTGCTTGCTGTCAATCCTACTGCCGGTCC
66 CAGAATGCGCAAGCCAGGGATCAGCCAGATCCCCCTCTGCGTGCTGTCAATCCTACTGCCGGTCC
***
15560260 TGCTACCACAACCCTCAGTTTGGCTGAGGCTTAGACATGGA
131 TGCTACCACAACCCTCAGCCAGGCTGAGGCTTAGACATGGA
* * * * *
15560301 ATGAACTTCGTATGCCTAAGCCAACCCATGAAATGAGCTTACGGGCGCTCAGTCGACCGGAGAGG
1 ATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGACCGAAGAGG
* * * * *
15560366 CAGAATGCGTAAGCCAGGGATCGGTCCAG-T-CCCCTCTGCGTGCTGTCGATCCTGCTGCTGGTC
66 CAGAATGCGCAAGCCAGGGATCAG-CCAGATCCCCCTCTGCGTGCTGTCAATCCTACTGCCGGTC
* * * *
15560429 CTGCTGCCACAACCCTCTGCCCAGTCTGA-TCTTAGAC-TAGGA
130 CTGCTACCACAACCCTCAG-CCAGGCTGAGGCTTAGACAT-GGA
*
15560471 ATGAACTTTGTATGC
1 ATGAACTTCGTATGC
15560486 TTAGACATGG
Statistics
Matches: 156, Mismatches: 26, Indels: 7
0.83 0.14 0.04
Matches are distributed among these distances:
169 1 0.01
170 70 0.45
171 82 0.53
172 3 0.02
ACGTcount: A:0.22, C:0.31, G:0.26, T:0.21
Consensus pattern (171 bp):
ATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGACCGAAGAGG
CAGAATGCGCAAGCCAGGGATCAGCCAGATCCCCCTCTGCGTGCTGTCAATCCTACTGCCGGTCC
TGCTACCACAACCCTCAGCCAGGCTGAGGCTTAGACATGGA
Found at i:15560497 original size:26 final size:26
Alignment explanation
Indices: 15560459--15560511 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15560449 CCAGTCTGAT
*
15560459 CTTAGACTAGGAATGAACTTTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
15560485 CTTAGAC-ATGGAATGAACTCTGTATG
1 CTTAGACTA-GGAATGAACTCTGTATG
15560511 C
1 C
15560512 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:15560964 original size:158 final size:157
Alignment explanation
Indices: 15560485--15560986 Score: 472
Period size: 158 Copynumber: 3.2 Consensus size: 157
15560475 ACTTTGTATG
*
15560485 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGTGTGCAGGCACTAAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCAGGCACTAAGC
* * * * * * *
15560550 TGGCCAGAAAAGGTAGAATGCACAAGTCGGGGATCAGCCCGGTCCCCCCTGCTTGCTGTCGATCC
66 -CGACAGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCC
* * **
15560615 TGCTGTCACAACCTTCTGTCTGGTCCAAT
130 TGCTGTCACAACC-TCAGTCCGGTCTGAT
* * ** * * * * *
15560644 CTTAGAAAGGGAATGAACTTTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTGAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCAGGCACTAAGC
* * * * * * ** *
15560709 CGACCGAAGAGGCATAATGCGCAAGCCGGGGATCA-ACTGATCCCCCTCTGCGTACTACCG-TTC
66 CGACAGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCC-CTGCGTGCTGTCGATCC
* * * * **
15560772 TCGCTGCCACAACCCTCGGT-CTGACTGGGG
130 T-GCTGTCACAA-CCTCAGTCCGGTCT-GAT
* * * * *
15560802 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGTGTGCAGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCAGGCACTAAGC
* * * * * *
15560867 CGACTGGAGAGGCAGAATGTGCAAGCCAGGGATCAGCCCGGTCTCCCCTGCGTGCTGTTGATCCT
66 CGACAGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCCT
15560932 GCTGTCACAACTCTCAGTCCGGTCTGAT
131 GCTGTCACAAC-CTCAGTCCGGTCTGAT
*
15560960 CTTAGAC-TGAGAATGAACTCCATATGC
1 CTTAGACATG-GAATGAACTCCGTATGC
15560987 TTAGACTGGG
Statistics
Matches: 267, Mismatches: 67, Indels: 19
0.76 0.19 0.05
Matches are distributed among these distances:
157 16 0.06
158 178 0.67
159 73 0.27
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.21
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCAGGCACTAAGC
CGACAGAAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCCT
GCTGTCACAACCTCAGTCCGGTCTGAT
Found at i:15560999 original size:26 final size:26
Alignment explanation
Indices: 15560960--15561012 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15560950 CCGGTCTGAT
15560960 CTTAGACTGAGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
* *
15560986 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCATATG
15561012 C
1 C
15561013 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:15567531 original size:26 final size:26
Alignment explanation
Indices: 15567493--15567545 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15567483 GGCTCAAAAT
15567493 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
*
15567519 CTTAGAC-ATGGAATGAACTTTGTATG
1 CTTAGACTA-GGAATGAACTTCGTATG
15567545 C
1 C
15567546 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCGTATG
Found at i:15567819 original size:159 final size:159
Alignment explanation
Indices: 15567519--15568019 Score: 400
Period size: 159 Copynumber: 3.2 Consensus size: 159
15567509 ACTTCGTATG
** * * *
15567519 CTTAGACATGGAATGAACTTTGTATGCCTAAGCCAACCTACGAAACGAGCGTGCGGGCGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAAC
* * * *
15567584 CAGTCGGAGAGGCAGAATGAGCAAGCCGGGGACCGACCCGGTGCCCCCCTGCTTGCTGTCGATCC
66 CAGCCGGAGAGGCAGAATGAGCAAGCCGGGGACCGACCCGATGCCCCCCTACGTGCTGTCGATCC
* **
15567649 TACTGTGACAACCCTCGATCCGATCTGAT
131 CACTGCCACAACCCTCGATCCGATCTGAT
* *
15567678 CTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATTCGGGCACT-AA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAA
* * * * *
15567741 GCTAGCCGGA-AGGGCATAATGTGCAAGCCGGGGATCGACCTGAT-CCCCCTCTACGTGCTGT-G
65 -CCAGCCGGAGA-GGCAGAATGAGCAAGCCGGGGACCGACCCGATGCCCCC-CTACGTGCTGTCG
* * * **
15567803 AGTCCCACTGCCACAACCCT-TAGTCTG-GCTAGGG
127 A-TCCCACTGCCACAACCCTCGA-TCCGATCT-GAT
* * * * * * * * ** *
15567837 CTTAGAAATGGAATGAACTCCCTATGCCTAAGCTAACTCAAGAAATGGGCGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAAC
* * * * * *
15567902 C-GATCGGAG-GGCAGAATGTGCAAGCTGGGGAATCGACCCGAT--CCCCCTGCATGCTGTCGAT
66 CAG-CCGGAGAGGCAGAATGAGCAAGCCGGGG-ACCGACCCGATGCCCCCCTACGTGCTGTCGAT
* * **
15567963 CCTACTGTCACAACCCTCGATCC-AGTCCAAT
129 CCCACTGCCACAACCCTCGATCCGA-TCTGAT
15567994 CTTA-AC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
15568020 TTAGACTGGG
Statistics
Matches: 270, Mismatches: 55, Indels: 37
0.75 0.15 0.10
Matches are distributed among these distances:
155 1 0.00
156 18 0.07
157 31 0.11
158 42 0.16
159 176 0.65
160 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACTCAAC
CAGCCGGAGAGGCAGAATGAGCAAGCCGGGGACCGACCCGATGCCCCCCTACGTGCTGTCGATCC
CACTGCCACAACCCTCGATCCGATCTGAT
Found at i:15568029 original size:26 final size:25
Alignment explanation
Indices: 15567994--15568045 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
15567984 CCAGTCCAAT
*
15567994 CTTAACTGGGAATGAACTCCGTATG
1 CTTAACTGGGAATGAACTCAGTATG
*
15568019 CTTAGACTGGGGATGAACTCAGTATG
1 CTTA-ACTGGGAATGAACTCAGTATG
15568045 C
1 C
15568046 CTAAATCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 4 0.17
26 20 0.83
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (25 bp):
CTTAACTGGGAATGAACTCAGTATG
Found at i:15568412 original size:26 final size:26
Alignment explanation
Indices: 15568374--15568426 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15568364 CCGGTTTGAT
*
15568374 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCATATG
*
15568400 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACAGGGAATGAACTCCATATG
15568426 C
1 C
15568427 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCATATG
Found at i:15568747 original size:159 final size:158
Alignment explanation
Indices: 15568399--15568768 Score: 395
Period size: 158 Copynumber: 2.3 Consensus size: 158
15568389 AACTCCGTAT
* * *
15568399 GCTTAGACATGGAATG-AACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCA
1 GCTTAGACATGGAATGAAATTCC-TATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCACTCA
* * * * * *
15568463 ATCGACCGGAGAGGTAGAATGAGCAAGCTGGGGATCGGCCCGATCCCCCCTGTGTGCTGTCGATC
65 ACCGACCGAAAAGGCAGAATGAGCAAGCTGAGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATC
* **** * **
15568528 TTGCTGTTGGAACCCTCGGTCCGTTTCGA
130 TCGCTGCCACAACCCTCAGTCCGACTCGA
* * * * * *
15568557 TCTTAGAC-TAGGAATGAACTTCATATGCCTAAGTCAACCCATGAAATGAGCGTGCAGGCACTGA
1 GCTTAGACAT-GGAATGAAATTCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCACTCA
* * * * * *
15568621 GCCGGCCGAAAAGGCATAATGCGCAAGCTGAGGATTGGCCCGATCCCCCTCTGCGTGCTGTCGGT
65 ACCGACCGAAAAGGCAGAATGAGCAAGCTGAGGATCGGCCCGATCCCCC-CTGCGTGCTGTCGAT
* *
15568686 -TCGACTGCCACAACCCTCAGTCCGACTGGG
129 CTCG-CTGCCACAACCCTCAGTCCGACTCGA
*
15568716 GCTTAGACATGGAATGAAATTCCTATGCCTAAGCCAACCCATGAAACGGGCGT
1 GCTTAGACATGGAATGAAATTCCTATGCCTAAGCCAACCCATGAAACGAGCGT
15568769 ACGGGTGCTC
Statistics
Matches: 170, Mismatches: 37, Indels: 9
0.79 0.17 0.04
Matches are distributed among these distances:
157 1 0.01
158 90 0.53
159 78 0.46
160 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAAATTCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCACTCAA
CCGACCGAAAAGGCAGAATGAGCAAGCTGAGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCT
CGCTGCCACAACCCTCAGTCCGACTCGA
Found at i:15568904 original size:26 final size:26
Alignment explanation
Indices: 15568875--15568931 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
15568865 CCGGTCTGAT
15568875 CTTAAACTAAGAATGAACTCCGTATG
1 CTTAAACTAAGAATGAACTCCGTATG
* * * *
15568901 CTTAGACTAGGGATGAACTCTGTATG
1 CTTAAACTAAGAATGAACTCCGTATG
15568927 CTTAA
1 CTTAA
15568932 GTGAACCCAC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30
Consensus pattern (26 bp):
CTTAAACTAAGAATGAACTCCGTATG
Found at i:15570145 original size:26 final size:26
Alignment explanation
Indices: 15570104--15570156 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15570094 CCAGTTCAAT
15570104 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
15570130 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
15570156 C
1 C
15570157 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:15570863 original size:26 final size:26
Alignment explanation
Indices: 15570825--15570877 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15570815 GGCACAAACT
15570825 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15570851 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15570877 C
1 C
15570878 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15571203 original size:26 final size:26
Alignment explanation
Indices: 15571167--15571219 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
15571157 CTGATTTGAT
15571167 CTTAGACTGGG-ATTGAA-TGCCGTATG
1 CTTAGACTGGGTA-TGAACT-CCGTATG
*
15571193 CTTAGATTGGGTATGAACTCCGTATG
1 CTTAGACTGGGTATGAACTCCGTATG
15571219 C
1 C
15571220 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGTATGAACTCCGTATG
Found at i:15571540 original size:26 final size:26
Alignment explanation
Indices: 15571504--15571556 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15571494 TCGGTTCGAT
15571504 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
15571530 CTTATACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15571556 C
1 C
15571557 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15573012 original size:26 final size:26
Alignment explanation
Indices: 15572908--15573005 Score: 180
Period size: 26 Copynumber: 3.8 Consensus size: 26
15572898 CAGGTCTGAT
15572908 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
15572934 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
15572960 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
15572986 CTTAGACATGGAATGAACTC
1 CTTAGACATGGAATGAACTC
15573006 TGAATGCCTA
Statistics
Matches: 71, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
26 70 0.99
27 1 0.01
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:15573498 original size:26 final size:26
Alignment explanation
Indices: 15573462--15573514 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15573452 TCGGTCCAAT
*
15573462 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15573488 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15573514 C
1 C
15573515 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15574110 original size:159 final size:158
Alignment explanation
Indices: 15573698--15574198 Score: 422
Period size: 159 Copynumber: 3.2 Consensus size: 158
15573688 ACTCCGTACA
* * * * *
15573698 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAA-CCAAGAAACAAGAGTGTGGGCGCTCAAT
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAAC
* * * * ** *
15573762 CGATCGGAGAGGCAGATTGCGCAAGCATG-GGACCAGCTCGGTCCCCCCTACATGCTATCGATCC
66 CGATCGGAGAGGCAGAATGCACAAGC-TGAGGATCAGCCCAATCCCCCCTACATGCTACCGATCC
* * *
15573826 TGCTACCACAACCCTCGGTCCGGTCTGAT
130 CGCTACCACAACCCTCGGTCCGGACTGAG
* * * * * *
15573855 CTTAGA-TTGTTAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCATACGGGCGCTCAA
1 CTTAGACATG-GAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
* * * * * * ** *
15573919 CAGGTCGAAGAGGTAAAATGCATAAG-TCGAGGATCAGCCCAATCCCACTTTGCATGCTACC-AG
65 CCGATCGGAGAGGCAGAATGCACAAGCT-GAGGATCAGCCCAATCCC-CCCTACATGCTACCGA-
* *
15573982 TCCCGCTGCCACAACCCTCGGTCC-GACTGGGG
127 TCCCGCTACCACAACCCTCGGTCCGGACT-GAG
* * * *
15574014 CTTAGACATGGAATGAACTCCCTATGCCGAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAAC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAAC
* **** * * * *
15574079 CGATCGGAGAGGCAGAATGCACAAGCTGAGGATCGGCTTGGTCACCTCTACATGCTACCTATCCT
66 CGATCGGAGAGGCAGAATGCACAAGCTGAGGATCAGCCCAATCCCCCCTACATGCTACCGATCCC
* * * * *
15574144 GCTACCGCAACCTTCGGTCCAGTCTGAT
131 GCTACCACAACCCTCGGTCCGGACTGAG
* *
15574172 CTTAGAC-TGGGAATGATCTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCATATGC
15574199 TTAGACTGGG
Statistics
Matches: 268, Mismatches: 64, Indels: 23
0.75 0.18 0.06
Matches are distributed among these distances:
156 3 0.01
157 31 0.12
158 110 0.41
159 121 0.45
160 3 0.01
ACGTcount: A:0.26, C:0.29, G:0.24, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAAC
CGATCGGAGAGGCAGAATGCACAAGCTGAGGATCAGCCCAATCCCCCCTACATGCTACCGATCCC
GCTACCACAACCCTCGGTCCGGACTGAG
Found at i:15574208 original size:26 final size:26
Alignment explanation
Indices: 15574172--15574224 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15574162 CCAGTCTGAT
*
15574172 CTTAGACTGGGAATGATCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15574198 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15574224 C
1 C
15574225 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15575447 original size:26 final size:26
Alignment explanation
Indices: 15575409--15575461 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15575399 CTAGTCTGAT
*
15575409 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15575435 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15575461 C
1 C
15575462 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15575553 original size:30 final size:30
Alignment explanation
Indices: 15575517--15575575 Score: 118
Period size: 30 Copynumber: 2.0 Consensus size: 30
15575507 AGAGGCAGAA
15575517 TGCGCTGTCGATCCTGTTGTTGCAACCCTG
1 TGCGCTGTCGATCCTGTTGTTGCAACCCTG
15575547 TGCGCTGTCGATCCTGTTGTTGCAACCCT
1 TGCGCTGTCGATCCTGTTGTTGCAACCCT
15575576 CGGTCCGATC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.10, C:0.31, G:0.25, T:0.34
Consensus pattern (30 bp):
TGCGCTGTCGATCCTGTTGTTGCAACCCTG
Found at i:15575641 original size:26 final size:26
Alignment explanation
Indices: 15575590--15575642 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15575580 CCGATCTAAT
*
15575590 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15575616 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
15575642 C
1 C
15575643 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15580836 original size:8 final size:8
Alignment explanation
Indices: 15580823--15580917 Score: 82
Period size: 8 Copynumber: 10.8 Consensus size: 8
15580813 ATACTATGCT
15580823 TAAAAAAA
1 TAAAAAAA
15580831 TAAAAAAAA
1 T-AAAAAAA
15580840 TAAAAAAAAA
1 T--AAAAAAA
15580850 TAAAAAATTGA
1 TAAAAAA---A
15580861 TGAAAAAAA
1 T-AAAAAAA
15580870 TGAAAAAAA
1 T-AAAAAAA
*
15580879 TGAAAAAA
1 TAAAAAAA
15580887 TGAAAAAAA
1 T-AAAAAAA
15580896 TAAAAAAA
1 TAAAAAAA
*
15580904 TGAAAAAA
1 TAAAAAAA
*
15580912 GAAAAA
1 TAAAAA
15580918 GTGAAAAAGG
Statistics
Matches: 75, Mismatches: 5, Indels: 14
0.80 0.05 0.15
Matches are distributed among these distances:
8 32 0.43
9 26 0.35
10 9 0.12
11 2 0.03
12 6 0.08
ACGTcount: A:0.80, C:0.00, G:0.07, T:0.13
Consensus pattern (8 bp):
TAAAAAAA
Found at i:15580839 original size:10 final size:10
Alignment explanation
Indices: 15580824--15580856 Score: 59
Period size: 10 Copynumber: 3.4 Consensus size: 10
15580814 TACTATGCTT
15580824 AAAAAAAT-A
1 AAAAAAATAA
15580833 AAAAAAATAA
1 AAAAAAATAA
15580843 AAAAAAATAA
1 AAAAAAATAA
15580853 AAAA
1 AAAA
15580857 TTGATGAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 8 0.35
10 15 0.65
ACGTcount: A:0.91, C:0.00, G:0.00, T:0.09
Consensus pattern (10 bp):
AAAAAAATAA
Found at i:15580917 original size:17 final size:17
Alignment explanation
Indices: 15580823--15580911 Score: 99
Period size: 17 Copynumber: 4.9 Consensus size: 17
15580813 ATACTATGCT
*
15580823 TAAAAAAATAAAAAAAA
1 TAAAAAAATGAAAAAAA
15580840 TAAAAAAAAAT-AAAAAATTGA
1 T--AAAAAAATGAAAAAA---A
15580861 TGAAAAAAATGAAAAAAA
1 T-AAAAAAATGAAAAAAA
*
15580879 TGAAAAAATGAAAAAAA
1 TAAAAAAATGAAAAAAA
15580896 TAAAAAAATGAAAAAA
1 TAAAAAAATGAAAAAA
15580912 GAAAAAGTGA
Statistics
Matches: 63, Mismatches: 3, Indels: 12
0.81 0.04 0.15
Matches are distributed among these distances:
17 31 0.49
18 8 0.13
19 8 0.13
20 8 0.13
21 8 0.13
ACGTcount: A:0.80, C:0.00, G:0.07, T:0.13
Consensus pattern (17 bp):
TAAAAAAATGAAAAAAA
Found at i:15580925 original size:9 final size:9
Alignment explanation
Indices: 15580824--15580911 Score: 101
Period size: 9 Copynumber: 9.7 Consensus size: 9
15580814 TACTATGCTT
*
15580824 AAAAAAATA
1 AAAAAAATG
*
15580833 AAAAAAATAA
1 AAAAAAAT-G
15580843 AAAAAAAT-
1 AAAAAAATG
15580851 AAAAAATTGATG
1 AAAAAA---ATG
15580863 AAAAAAATG
1 AAAAAAATG
15580872 AAAAAAATG
1 AAAAAAATG
15580881 -AAAAAATG
1 AAAAAAATG
15580889 AAAAAAAT-
1 AAAAAAATG
15580897 AAAAAAATG
1 AAAAAAATG
15580906 AAAAAA
1 AAAAAA
15580912 GAAAAAGTGA
Statistics
Matches: 72, Mismatches: 0, Indels: 14
0.84 0.00 0.16
Matches are distributed among these distances:
8 22 0.31
9 33 0.46
10 9 0.12
11 2 0.03
12 6 0.08
ACGTcount: A:0.81, C:0.00, G:0.07, T:0.12
Consensus pattern (9 bp):
AAAAAAATG
Found at i:15580926 original size:8 final size:8
Alignment explanation
Indices: 15580864--15580925 Score: 81
Period size: 8 Copynumber: 7.6 Consensus size: 8
15580854 AAATTGATGA
15580864 AAAAAATG
1 AAAAAATG
15580872 AAAAAAATG
1 -AAAAAATG
15580881 AAAAAATG
1 AAAAAATG
*
15580889 AAAAAAATA
1 -AAAAAATG
15580898 AAAAAATG
1 AAAAAATG
15580906 AAAAAA-G
1 AAAAAATG
*
15580913 AAAAAGTG
1 AAAAAATG
15580921 AAAAA
1 AAAAA
15580926 GGAGGACTCA
Statistics
Matches: 48, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
7 6 0.12
8 27 0.56
9 15 0.31
ACGTcount: A:0.79, C:0.00, G:0.11, T:0.10
Consensus pattern (8 bp):
AAAAAATG
Found at i:15582077 original size:43 final size:42
Alignment explanation
Indices: 15581920--15582093 Score: 217
Period size: 42 Copynumber: 4.1 Consensus size: 42
15581910 ATGATTGTCA
* *
15581920 AGGAGTAATTTA-CTTTCCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTATCTTTCCAAAGTCGTGGAGCCTCTGTTTAG
* *
15581961 AGGAGCAATTTA-CTTTCCCAAAGTCGTGGTGCCTTTGTTTAG
1 AGGAGCAATTTATCTTT-CCAAAGTCGTGGAGCCTCTGTTTAG
* * * *
15582003 AGGAGCAATTTATTTTTCCAAAGTCGTTGAGCCTCTGATCAG
1 AGGAGCAATTTATCTTTCCAAAGTCGTGGAGCCTCTGTTTAG
* * *
15582045 AGGAGCCATTTATGTTTCTCAAAGTCGTTGAGCCTCTGTTTAG
1 AGGAGCAATTTATCTTTC-CAAAGTCGTGGAGCCTCTGTTTAG
15582088 AGGAGC
1 AGGAGC
15582094 TTTGATAAAA
Statistics
Matches: 118, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
41 15 0.13
42 72 0.61
43 31 0.26
ACGTcount: A:0.23, C:0.18, G:0.24, T:0.34
Consensus pattern (42 bp):
AGGAGCAATTTATCTTTCCAAAGTCGTGGAGCCTCTGTTTAG
Found at i:15582309 original size:6 final size:6
Alignment explanation
Indices: 15582300--15582355 Score: 69
Period size: 6 Copynumber: 9.2 Consensus size: 6
15582290 TTTCTCTTCA
*
15582300 TTTTAT TTTTA- TTTTAT TTTTAT TTTGTAT TTTACAT TTTTAT TTTTAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTT-TAT TTT-TAT TTTTAT TTTTAT
*
15582349 TATTAT T
1 TTTTAT T
15582356 ATTTTATATA
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
5 5 0.11
6 28 0.64
7 11 0.25
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.77
Consensus pattern (6 bp):
TTTTAT
Found at i:15582532 original size:19 final size:21
Alignment explanation
Indices: 15582490--15582534 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
15582480 ATTTATGTAA
*
15582490 TTATCTGTTATTTAATTTTAAT
1 TTATCTGTTAATT-ATTTTAAT
15582512 TTATCTGTTAATT-TTTT-AT
1 TTATCTGTTAATTATTTTAAT
15582531 TTAT
1 TTAT
15582535 TTATCTGATT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 6 0.27
20 4 0.18
22 12 0.55
ACGTcount: A:0.24, C:0.04, G:0.04, T:0.67
Consensus pattern (21 bp):
TTATCTGTTAATTATTTTAAT
Found at i:15583201 original size:26 final size:26
Alignment explanation
Indices: 15583165--15583217 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15583155 GTTGACCTAG
15583165 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
15583191 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15583217 G
1 G
15583218 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15583492 original size:159 final size:160
Alignment explanation
Indices: 15583191--15583695 Score: 445
Period size: 159 Copynumber: 3.2 Consensus size: 160
15583181 CCCAGTCTAA
* * * * * * * *
15583191 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACTGGATCGAGGGTTGCGACAGTAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCGAACCAAGGGTTGCGACAGCAAGACCGA
* * * * * * *
15583254 CAGCACGTAGGG-GGGA-CTGTGTCGATCCCTGGCTTACGCATTCTGCCTCTCTGGCCGGCTGAG
65 TAGCACGCAGGGAGGGATC-GGGCCGATCCCTGGCTTACGCATTCTGCCTCTCCGGCCAGCTAAG
* * *
15583317 CGCCCGTATGCCCGTTTCATGGGTTGGCTTAG
129 CGCCCGAACGCCCGTTTCGTGGGTTGGCTTAG
* * * * * * ***
15583349 GCGTAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGAACCAAGGGTTGTGGCAGTGGGACCAGA
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGAACCAAGGGTTGCGACAGCAAGACC-GA
* * * * * *
15583413 -AGCATGCAGAGG-GGGATCGGGCTGATCCCTGGCTTGCGCATTATGCCTCTCCGGCCAACTCAG
65 TAGCACGCAG-GGAGGGATCGGGCCGATCCCTGGCTTACGCATTCTGCCTCTCCGGCCAGCTAAG
* * *
15583476 CGCCCGAACGCTCGTTTTGTGGGTTGACTTAG
129 CGCCCGAACGCCCGTTTCGTGGGTTGGCTTAG
* * * * * *
15583508 GCATACAGAGTTCATTCC-TAGTCTAAG-ATCTGACCGGACCATGGGTTGCGACAGCAAGATCGA
1 GCATACGGAGTTCATTCCAT-GTCTAAGCACCAGACCGAACCAAGGGTTGCGACAGCAAGACCGA
15583571 TAGCACGCAGGGAGGGATCGGGCCGAT-CCTCGGCTTACGCATTCTGCCTCTCCGGCCAGCTAAG
65 TAGCACGCAGGGAGGGATCGGGCCGATCCCT-GGCTTACGCATTCTGCCTCTCCGGCCAGCTAAG
* * * * *
15583635 CACCCGCACACGCGTTTCGTGGGTTAGCTTAG
129 CGCCCGAACGCCCGTTTCGTGGGTTGGCTTAG
* *
15583667 GCATACGGAGTTCATTCTATGTCCAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
15583696 TACAGAATTC
Statistics
Matches: 274, Mismatches: 61, Indels: 22
0.77 0.17 0.06
Matches are distributed among these distances:
157 3 0.01
158 57 0.21
159 211 0.77
160 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (160 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGAACCAAGGGTTGCGACAGCAAGACCGAT
AGCACGCAGGGAGGGATCGGGCCGATCCCTGGCTTACGCATTCTGCCTCTCCGGCCAGCTAAGCG
CCCGAACGCCCGTTTCGTGGGTTGGCTTAG
Found at i:15584405 original size:26 final size:26
Alignment explanation
Indices: 15584376--15584428 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15584366 GGCTCAAACT
*
15584376 CTTAGAC-TGGGAATGAACTCGATATG
1 CTTAGACAT-GGAATGAACTCCATATG
15584402 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
15584428 C
1 C
15584429 CTAAGCCAGC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:15586025 original size:159 final size:160
Alignment explanation
Indices: 15585615--15586055 Score: 434
Period size: 159 Copynumber: 2.8 Consensus size: 160
15585605 GAACTCCATA
* * *
15585615 GGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCACTCA
1 GGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * * * *
15585680 GCTGACCCGAGTGGCAGAATGCGTAAGCCAGGGA-CCGACTTGGTCCCCTCCTGCGTGCTGTCAA
66 GCTGACCGGAGAGGCAGAATACGCAAGTCAGGGATCAGACCTGATCCCCTCCTACGTGCTGTCAA
** ** *
15585744 TCTTGCTGCTGCAACCCTCGGTCCGATCTG
131 TCCCGCTGCCACAACCCTCGGTCCGAGCTG
** * * * * *
15585774 ATCTTAGAC-TGGGAATAAAC-CCCGTATGCCTAAGTCAACCCACGAAA-GAAGCGTTCGGGTGT
1 GGCTTAGACAT-GGAATGAACTCCC-TATGCCTAAGCCAACCCACGAAACG-AGCGTGCGGGCGC
* * * * * * *
15585836 TGAGCTGACCGGAGAGGCATAATACACAAGTCGGGGATCAG-CCTGATCCCTTTCTATGTGCTGT
63 TCAGCTGACCGGAGAGGCAGAATACGCAAGTCAGGGATCAGACCTGATCCCCTCCTACGTGCTGT
**
15585900 CGGTCCCGCTGCCACAACCCTCGGTCCG-GCTGG
128 CAATCCCGCTGCCACAACCCTCGGTCCGAGCT-G
*
15585933 GGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACG-GCCGTGCGGGCGCTC
1 GGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAG-CGTGCGGGCGCTC
* *
15585997 AGCCTG-TCGGAGAGGCAGAATACGCAAGTCAGGGATC-GACCCGATCCCCT-CTACGTGCT
65 AG-CTGACCGGAGAGGCAGAATACGCAAGTCAGGGATCAGACCTGATCCCCTCCTACGTGCT
15586056 ACCAATCCAA
Statistics
Matches: 222, Mismatches: 49, Indels: 23
0.76 0.17 0.08
Matches are distributed among these distances:
158 16 0.07
159 196 0.88
160 10 0.05
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (160 bp):
GGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
GCTGACCGGAGAGGCAGAATACGCAAGTCAGGGATCAGACCTGATCCCCTCCTACGTGCTGTCAA
TCCCGCTGCCACAACCCTCGGTCCGAGCTG
Found at i:15586202 original size:13 final size:13
Alignment explanation
Indices: 15586184--15586209 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
15586174 GGCGCTCTGT
15586184 CGATCGGAGAGGC
1 CGATCGGAGAGGC
15586197 CGATCGGAGAGGC
1 CGATCGGAGAGGC
15586210 AGAATGCGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.46, T:0.08
Consensus pattern (13 bp):
CGATCGGAGAGGC
Found at i:15586373 original size:710 final size:705
Alignment explanation
Indices: 15584860--15587220 Score: 2798
Period size: 710 Copynumber: 3.3 Consensus size: 705
15584850 TCCTGCTGCT
** ** * *
15584860 GTAACCCTCGATCCGATTTGATCTTTCACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAA
1 GTAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCATAGGCTTAGACATGGAATGAA
* * * *
15584925 CTCAGTATGCCTAAGCCAACCTACGAAACGAGCGTGCGAGCGCTCAGCTGATCGGAGAGGCAGAA
66 CTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCGACCGGAGAGGCAGAA
* * * * * ** * *
15584990 TGCGTAAGCCGAGGACTGACCTGGTCCCTTCCTTTGTGCTGTCGATCCTGCTGGTGCAACCCTTG
131 TGCGCAAGCCGGGGACCGACCCGGTCCCCTCCTGCGTGCTGTCGATCCTGCTGCTGCAACCCTCG
* * * *
15585055 GTCTGATCCGATCTTAGACTGGGAATAAAATCCGTATGCCTAAGTCAACCCACGAAATGAGTGTT
196 GTCCGATCTGATCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTT
* * * * *
15585120 CGGGTGTTGAACCGGTCGGAGAGGCATAATGCGCAAGTCGGGGATCGGCCCGATCCCCTTCTATG
261 CGGGTGTTGAGCTGGCCGGAGAGGCATAATACGCAAGTCGGGGATCGGCCTGATCCCCTTCTATG
* *
15585185 TGCTGTCGGTCCCACTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTA
326 TGCTGTCGGTCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTA
* *
15585250 TGCCTAAGCCAACCTATGAAACGGGCGTGCGGGTGCTCAGCCTGTCGGAGAGGCA-AATACGTAA
391 TGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAGCCTGTCGGAGAGGCAGAATACGCAA
* * *
15585314 GTCGGGGATCAACCCTATCCCCTCTACGTGCTACCGATCCTGCTGTCGCAACCCTTGATCCGATC
456 GTCAGGGATC-ACCCGATCCCCTCTACGTGCTACCGAT-C--CTGTCGCAACCCTTGATCCGGTC
*
15585379 TAATCTTACACTGGGAATGAACTCCGTATGCGTAGATTGGTGATGAACTCCGTATGCCTAAGTCA
517 TAATCTTACACTGGGAATGAACTCCGTATGCGTAGACTGGTGATGAACTCCGTATGCCTAAGTCA
* *
15585444 ACCCATGAAATAAGCGTGCGGGCACTCTGCCGACCGGAGAGGCCGATCGGAGAGGCAGAATGTGC
582 ACCCATGAAATGAGCGTGCGGGCGCTCTGCCGACCGGAGAGGCCGATCGGAGAGGCAGAATGTGC
** *
15585509 AAGCCAGGGATCGGTTC-GATCCCCCTACGTGTTGCCAATCTTGCTGCTGGTCTTGCTATC
647 AAGCCAGGGATC-GACCAG-TCCCCCTACGTGTTGCCAATCTTGCTGCTGGTCTTCCTATC
* * * *
15585569 GCAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATAGGCTTAGACATGGAATGAA
1 GTAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCATAGGCTTAGACATGGAATGAA
* * * *
15585634 CTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCACTCAGCTGACCCGAGTGGCAGAA
66 CTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCGACCGGAGAGGCAGAA
* * ** * *
15585699 TGCGTAAGCCAGGGACCGACTTGGTCCCCTCCTGCGTGCTGTCAATCTTGCTGCTGCAACCCTCG
131 TGCGCAAGCCGGGGACCGACCCGGTCCCCTCCTGCGTGCTGTCGATCCTGCTGCTGCAACCCTCG
*
15585764 GTCCGATCTGATCTTAGACTGGGAATAAACCCCGTATGCCTAAGTCAACCCACGAAA-GAAGCGT
196 GTCCGATCTGATCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAATG-AGCGT
* * * *
15585828 TCGGGTGTTGAGCTGACCGGAGAGGCATAATACACAAGTCGGGGATCAGCCTGATCCCTTTCTAT
260 TCGGGTGTTGAGCTGGCCGGAGAGGCATAATACGCAAGTCGGGGATCGGCCTGATCCCCTTCTAT
15585893 GTGCTGTCGGTCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCT
325 GTGCTGTCGGTCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCT
* *
15585958 ATGCCTAAGCCAACCCATGAAACGGCCGTGCGGGCGCTCAGCCTGTCGGAGAGGCAGAATACGCA
390 ATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAGCCTGTCGGAGAGGCAGAATACGCA
* *
15586023 AGTCAGGGATCGACCCGATCCCCTCTACGTGCTACCAATCCAAATGTCGCAACCCTTGATCTGGT
455 AGTCAGGGATC-ACCCGATCCCCTCTACGTGCTACCGATCC---TGTCGCAACCCTTGATCCGGT
15586088 CTAATCTTACACTGGGAATGAACTCCGTATGCGTAGACTGGTGATGAACTCCGTATGCCTAAGTC
516 CTAATCTTACACTGGGAATGAACTCCGTATGCGTAGACTGGTGATGAACTCCGTATGCCTAAGTC
* * * *
15586153 AACCCATGAAATGAGCGTACGGGCGCTCTGTCGATCGGAGAGGCCGATCGGAGAGGCAGAATGCG
581 AACCCATGAAATGAGCGTGCGGGCGCTCTGCCGACCGGAGAGGCCGATCGGAGAGGCAGAATGTG
* *
15586218 TAAGCCAGGGATC-AGCCAAGTCCCCCTACGTGTTGCCAATCTTGCTGCTGGTCTTTCTATC
646 CAAGCCAGGGATCGA-CC-AGTCCCCCTACGTGTTGCCAATCTTGCTGCTGGTCTTCCTATC
* * *
15586279 GTAACCCTTGGTCCGATCTGATCTTAGACTGGGAATGAACTCCATAGGCTTAGACATGGAATGAA
1 GTAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCATAGGCTTAGACATGGAATGAA
* *
15586344 CTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAA
66 CTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCGACCGGAGAGGCAGAA
* * ** * * ** * *
15586409 TGCACAAGCTGGGGATAGGCTCAATCCCCCCCTGCGTGCTGTCGATCCTGCT-ATCGCAACCCTC
131 TGCGCAAGCCGGGGACCGACCCGGTCCCCTCCTGCGTGCTGTCGATCCTGCTGCT-GCAACCCTC
* * * * *
15586473 AGTCCGATCCT-ATCTTAGATTGGGAATGAACTCCATATGCCTAAGTCAACCCACAAAATGAGCG
195 GGTCCGAT-CTGATCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCG
* ** * * * * * * * *
15586537 TTTGAATGCTGAGCTGGCCGGAGAGACATAATACGTAAGCCGAGGATCGGCTTGATCCCCCTCTG
259 TTCGGGTGTTGAGCTGGCCGGAGAGGCATAATACGCAAGTCGGGGATCGGCCTGATCCCCTTCTA
* ** * * * * * * * * *
15586602 CGTGCTACCGATCCTGCTGTCACAAACTTCAGTCCGGTTGCGGCTTAGACATGGAATGAA-TTCC
324 TGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCC
* * * * * * *
15586666 TGATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGTGCTCA-TCTGGCCAGAGAGGTAGAATGC
389 T-ATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAGCCT-GTCGGAGAGGCAGAATAC
* * * * ** * * * *
15586730 ACAAGCCAGGGATCAGCCCGGTCCCCCCTATATGCTATCGATCCTGCTACTGTAACCCTAGGTCC
452 GCAAGTCAGGGATCA-CCCGATCCCCTCTACGTGCTACCGATCCTG-T-C-GCAACCCTTGATCC
* * * *
15586795 GGTATGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGG-GATGAACTCCGTATGCCTA
513 GGTCTAATCTTACACTGGGAATGAACTCCGTATGCGTAGACT-GGTGATGAACTCCGTATGCCTA
* * * * ** *
15586859 AGTCAACCCACGAAATGAGCGTGCGGGTGCT-AGCCGGCCGGAGAGGTGGA-CTGGAGAGGTAGA
577 AGTCAACCCATGAAATGAGCGTGCGGGCGCTCTGCCGACCGGAGAGGCCGATC-GGAGAGGCAGA
* ** * * * * ** *
15586922 ATATGCAAGCTGGGGATCGACTCGGTCCCCCT-TGTG-GGCTATCGATCTTGCTATTGGTCCTCC
641 ATGTGCAAGCCAGGGATCGAC-CAGTCCCCCTACGTGTTGC---CAATCTTGCTGCTGGTCTTCC
15586985 TATC
702 TATC
* *
15586989 GTAACCCTCGATCC-AGTCCGATCTTAGACAT-GGAATGAACTCCGTATGCTTAGACATGGAATG
1 GTAACCCTCGATCCGA-TCCGATCTTAGAC-TGGGAATGAACTCCATAGGCTTAGACATGGAATG
* * * * **
15587052 AACTCCGTATGCCTAAGCCAA-CCAAGAAACGAGCGTGTGGGCGCTCAACCGATTGGAGAGGCAG
64 AACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCGACCGGAGAGGCAG
* * * *
15587116 AATGCGCAAGCTGGGGAAC-AGCCCGGTCCCC-CCTACGTGCTGTCGATCCTTCTGCTGCAACCC
129 AATGCGCAAGCCGGGGACCGA-CCCGGTCCCCTCCTGCGTGCTGTCGATCCTGCTGCTGCAACCC
* * * * *
15587179 TCGGTCCAGTTC-GATCTTAAACCGGGAATGAACTCTGTATGC
193 TCGGTCC-GATCTGATCTTAGACTGGGAATAAACTCCGTATGC
15587221 TTAGACTAGG
Statistics
Matches: 1426, Mismatches: 196, Indels: 61
0.85 0.12 0.04
Matches are distributed among these distances:
707 5 0.00
708 64 0.04
709 517 0.36
710 833 0.58
711 7 0.00
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.22
Consensus pattern (705 bp):
GTAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCATAGGCTTAGACATGGAATGAA
CTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCGACCGGAGAGGCAGAA
TGCGCAAGCCGGGGACCGACCCGGTCCCCTCCTGCGTGCTGTCGATCCTGCTGCTGCAACCCTCG
GTCCGATCTGATCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTT
CGGGTGTTGAGCTGGCCGGAGAGGCATAATACGCAAGTCGGGGATCGGCCTGATCCCCTTCTATG
TGCTGTCGGTCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTA
TGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAGCCTGTCGGAGAGGCAGAATACGCAA
GTCAGGGATCACCCGATCCCCTCTACGTGCTACCGATCCTGTCGCAACCCTTGATCCGGTCTAAT
CTTACACTGGGAATGAACTCCGTATGCGTAGACTGGTGATGAACTCCGTATGCCTAAGTCAACCC
ATGAAATGAGCGTGCGGGCGCTCTGCCGACCGGAGAGGCCGATCGGAGAGGCAGAATGTGCAAGC
CAGGGATCGACCAGTCCCCCTACGTGTTGCCAATCTTGCTGCTGGTCTTCCTATC
Found at i:15586743 original size:159 final size:158
Alignment explanation
Indices: 15586325--15586743 Score: 423
Period size: 159 Copynumber: 2.6 Consensus size: 158
15586315 GAACTCCATA
* *
15586325 GGCTTAGACATGGAATGAACTCC-GTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC
1 GGCTTAGACATGGAATGAACTCCTG-ATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTC
* * * **
15586389 AGCCGGCCGGAGAGGCAGAATGCACAAGCTGGGGATAGGCTCAATCCCCCCCTGCGTGCTGTCGA
65 AGCTGGCCGGAGAGGCAGAATGCACAAGC-CGGGATCGGCTCAATCCCCCCCTGCGTGCTACCGA
* *
15586454 TCCTGCTATCGCAACCCTCAGTCCGATCCT
129 TCCTGCTATCACAAACCTCAGTCCGATCCT
** * * * ** **
15586484 ATCTTAGA-TTGGGAATGAACTCCAT-ATGCCTAAGTCAACCCACAAAATGAGCGTTTGAATGCT
1 GGCTTAGACAT-GGAATGAACTCC-TGATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCT
* * * * ** ** *
15586547 GAGCTGGCCGGAGAGACATAATACGTAAGCCGAGGATCGGCTTGATCCCCCTCTGCGTGCTACCG
64 CAGCTGGCCGGAGAGGCAGAATGCACAAGCCG-GGATCGGCTCAATCCCCCCCTGCGTGCTACCG
* * * *
15586612 ATCCTGCTGTCACAAACTTCAGTCCGGTTGC-
128 ATCCTGCTATCACAAACCTCAGTCC-GATCCT
* *
15586643 GGCTTAGACATGGAATGAATTCCTGATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGTGCTCA
1 GGCTTAGACATGGAATGAACTCCTGATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCA
* * *
15586708 TCTGGCCAGAGAGGTAGAATGCACAAGCCAGGGATC
66 GCTGGCCGGAGAGGCAGAATGCACAAGCC-GGGATC
15586744 AGCCCGGTCC
Statistics
Matches: 201, Mismatches: 51, Indels: 16
0.75 0.19 0.06
Matches are distributed among these distances:
158 3 0.01
159 193 0.96
160 5 0.02
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.20
Consensus pattern (158 bp):
GGCTTAGACATGGAATGAACTCCTGATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCA
GCTGGCCGGAGAGGCAGAATGCACAAGCCGGGATCGGCTCAATCCCCCCCTGCGTGCTACCGATC
CTGCTATCACAAACCTCAGTCCGATCCT
Found at i:15586833 original size:26 final size:26
Alignment explanation
Indices: 15586803--15586855 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15586793 CCGGTATGAT
15586803 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
15586829 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
15586855 C
1 C
15586856 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:15587040 original size:26 final size:26
Alignment explanation
Indices: 15587011--15587063 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15587001 CCAGTCCGAT
15587011 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
15587037 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
15587063 C
1 C
15587064 CTAAGCCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:15588285 original size:26 final size:26
Alignment explanation
Indices: 15588256--15588308 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15588246 CCAATCCGAT
15588256 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * * *
15588282 CTTAGACTGGGGATGAATTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15588308 C
1 C
15588309 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:15588786 original size:26 final size:26
Alignment explanation
Indices: 15588757--15588809 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15588747 TCAGTCCGAT
*
15588757 CTTAGATTG-GGAATGAACTCCGTATG
1 CTTAGATTGAGG-ATAAACTCCGTATG
*
15588783 CTTAGATTGAGGATAAACTCTGTATG
1 CTTAGATTGAGGATAAACTCCGTATG
15588809 C
1 C
15588810 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGATTGAGGATAAACTCCGTATG
Found at i:15589005 original size:26 final size:26
Alignment explanation
Indices: 15588967--15589019 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15588957 CCAGTTTAAT
15588967 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15588993 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15589019 C
1 C
15589020 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15589499 original size:26 final size:26
Alignment explanation
Indices: 15589470--15589521 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15589460 CGGTCTGATT
*
15589470 TTAGACT-GGGAATGAACTCCGTATGC
1 TTAGACTAGGG-ATGAAATCCGTATGC
15589496 TTAGACTAGGGATGAAATCCGTATGC
1 TTAGACTAGGGATGAAATCCGTATGC
15589522 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTAGGGATGAAATCCGTATGC
Found at i:15589784 original size:197 final size:196
Alignment explanation
Indices: 15589446--15589803 Score: 495
Period size: 197 Copynumber: 1.8 Consensus size: 196
15589436 ATCCTACTAC
* * * * *
15589446 CGCAACCTTCGATCCGGTCTGATTTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGA
1 CGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAAGCTTAGACTAGGAATGA
* * *
15589511 AATCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGTGGGCACTCAGTCGATCGAAGAGGCAAA
66 AATCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGAGCACTCAGCCGATCGAAGAGGCAAA
*
15589576 ATGCGCAAGCCGAGGATCAGCCCAGTCTCCCCCAGCATGCTGCCAATCCTACTGCTGGTCCTGCT
131 ATGCACAAGCCGAGGATCAGCCCAGTC-CCCCCAGCATGCTGCCAATCCTACTGCTGGTCCTGCT
15589641 GT
195 GT
* * *
15589643 CGCAACCCTCGGTCCGGTCCGATCTTAGATTGGGAATGAAGCTCCGTAAGCTTAGAC-ATGAATG
1 CGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAA-CTCCGTAAGCTTAGACTAGGAATG
* * * * * *
15589707 AACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGT-TCGAGCATTGAGCCGGTCGGAGAGGCA
65 AAATCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGT-GAGCACTCAGCCGATCGAAGAGGCA
* *
15589771 TAATGCACAAGCCGGGGATCAGCCCAGTCCCCC
129 AAATGCACAAGCCGAGGATCAGCCCAGTCCCCC
15589804 TCTACGTGCT
Statistics
Matches: 139, Mismatches: 20, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
196 5 0.04
197 119 0.86
198 15 0.11
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (196 bp):
CGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTAAGCTTAGACTAGGAATGA
AATCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGAGCACTCAGCCGATCGAAGAGGCAAA
ATGCACAAGCCGAGGATCAGCCCAGTCCCCCCAGCATGCTGCCAATCCTACTGCTGGTCCTGCTG
T
Found at i:15591076 original size:330 final size:329
Alignment explanation
Indices: 15590482--15591101 Score: 760
Period size: 330 Copynumber: 1.9 Consensus size: 329
15590472 GGATCGGCTC
** * *
15590482 GATCCCCCTCTACGTGCTACCAGGCCCGCTGCCACAACCCTCAATCCGGTTGGGGCTTAGACTTG
1 GATCCCCCTCTACGTGCTACCAGGCCCGCTGCCACAACCCTCAATCCGACTAGGGCTTAGACATG
* * * ** * *
15590547 GAAGGAACTCCTTATGCCTAAGCCAACCCATGAACGGGCGTGTGGGCGCTCAGCCGACTAGAGAG
66 GAAGGAACTCCCTATGCCTAAGCAAACCCATAAACGGGCGTACGGGCACTCAGCCGACCAGAGAG
* ** * * * *
15590612 GCAAAATGCGTAAGCCGGGGATCAGCCCGGTCCCCCCTGCATGCTGTCGATCCTACTGTCGCAAC
131 GCAAAATACACAAGCCGGAGATCAGCCCGATCCCCCCTGCATGCTGTCAATCCTACTATCGCAAC
* * * *
15590677 CCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
196 CATCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATACCTAAGTCAACCCACAAAACGA
* *
15590742 GCGTGCGGGCGCTCAGTCGATCGGAGAGGCCAGCCAGAGAGGTAGAATGCGCAAGCCGGGGATCG
261 GCGTGCGGGCGCTCAATCGATCGAAGAGGCCAGCCAGAGAGGTAGAATGCGCAAGCCGGGGATCG
15590807 ACCT
326 ACCT
* * * * * *
15590811 GATCCCCCTTTGCGTGCTACC-GATCCCGTTGCCACAACCCTCGATCCGACTATGGCTTAGACAT
1 GATCCCCCTCTACGTGCTACCAG-GCCCGCTGCCACAACCCTCAATCCGACTAGGGCTTAGACAT
* *
15590875 GGAATGAACTCCCTATGCCTAAGCAAACCCATAAAATGGGCGTACGGGCACTCAGCCGACCAGAG
65 GGAAGGAACTCCCTATGCCTAAGCAAACCCAT-AAACGGGCGTACGGGCACTCAGCCGACCAGAG
* * ** * ** *
15590940 AGGCAGAATACACAA-CCTGTAGATTGGCCCGATGCCCCCTGTGTGCTG-CTAATCTTACTATCG
129 AGGCAAAATACACAAGCC-GGAGATCAGCCCGATCCCCCCTGCATGCTGTC-AATCCTACTATCG
* * *
15591003 TAACCATCGGTCTGGTCCAATTTTAGACTGGGAATGAACTCCGTATACCTAAGTCAACCCATAAA
192 CAACCATCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATACCTAAGTCAACCCACAAA
* * * *
15591068 ATGAGCGTGGGGGTGCTCAATCGGTCGAAGAGGC
257 ACGAGCGTGCGGGCGCTCAATCGATCGAAGAGGC
15591102 AAAATGCGTA
Statistics
Matches: 240, Mismatches: 47, Indels: 7
0.82 0.16 0.02
Matches are distributed among these distances:
328 1 0.00
329 84 0.35
330 155 0.65
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (329 bp):
GATCCCCCTCTACGTGCTACCAGGCCCGCTGCCACAACCCTCAATCCGACTAGGGCTTAGACATG
GAAGGAACTCCCTATGCCTAAGCAAACCCATAAACGGGCGTACGGGCACTCAGCCGACCAGAGAG
GCAAAATACACAAGCCGGAGATCAGCCCGATCCCCCCTGCATGCTGTCAATCCTACTATCGCAAC
CATCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATACCTAAGTCAACCCACAAAACGA
GCGTGCGGGCGCTCAATCGATCGAAGAGGCCAGCCAGAGAGGTAGAATGCGCAAGCCGGGGATCG
ACCT
Found at i:15591731 original size:26 final size:26
Alignment explanation
Indices: 15591695--15591747 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15591685 TCGGTCCTAT
*
15591695 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15591721 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15591747 C
1 C
15591748 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15592735 original size:26 final size:26
Alignment explanation
Indices: 15592706--15592758 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15592696 CCGGTCTGAT
15592706 CTTAGACTAAGAATGAACTCCGTATG
1 CTTAGACTAAGAATGAACTCCGTATG
* *
15592732 CTTAGACTATGGATGAACTCCGTATG
1 CTTAGACTAAGAATGAACTCCGTATG
15592758 C
1 C
15592759 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAAGAATGAACTCCGTATG
Found at i:15593692 original size:26 final size:26
Alignment explanation
Indices: 15593656--15593708 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15593646 TCTGTTCGAT
15593656 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
15593682 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15593708 C
1 C
15593709 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15594405 original size:26 final size:26
Alignment explanation
Indices: 15594367--15594419 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15594357 GGCTCAAAAT
*
15594367 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15594393 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15594419 C
1 C
15594420 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15594736 original size:159 final size:158
Alignment explanation
Indices: 15594392--15594749 Score: 373
Period size: 158 Copynumber: 2.3 Consensus size: 158
15594382 AACTCCGTAT
* ** * *
15594392 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACCAAACAAGCGTGCGGGCGCTCAG
* * * * **
15594457 TCGGCCGAAGAGGCAGAATGCGCAAGCCAGGAATCGGCCCGGCCACCCCTGCGTGCTGTCGATCC
66 TCGGCCAAAGAGGCAGAATGAGCAAGCCAGGAATCAGCCCGGCCACCCCTGCATGCTACCGATCC
* * * *
15594522 TGCTGCCGCAACCCTTGGTCTGGTAATA
131 TGCTGCCACAACCCTCGGTCCGGTAAGA
* * * * * * *
15594550 TCTTAGAC-TGGGAATGAACTCCTTATGCATAAGTCAACCCACCAAACAAGCGTGGGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACCAAACAAGCGTGCGGGCGCTCA
* * * *
15594614 GTCGGCCAAAGAGGCATAATGAGCAAGTCGAGG-ATCAGCCTGGTCC-CTCTCTGCATGCTACCG
65 GTCGGCCAAAGAGGCAGAATGAGCAAG-CCAGGAATCAGCCCGG-CCAC-CCCTGCATGCTACCG
* ** *
15594677 AT-TTCGCTGCCACAACCCTCGGTCCGGTTGGG
127 ATCCT-GCTGCCACAACCCTCGGTCCGGTAAGA
15594709 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
15594750 TAAAACTGGA
Statistics
Matches: 161, Mismatches: 33, Indels: 11
0.79 0.16 0.05
Matches are distributed among these distances:
157 1 0.01
158 85 0.53
159 74 0.46
160 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACCAAACAAGCGTGCGGGCGCTCAG
TCGGCCAAAGAGGCAGAATGAGCAAGCCAGGAATCAGCCCGGCCACCCCTGCATGCTACCGATCC
TGCTGCCACAACCCTCGGTCCGGTAAGA
Done.