Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19866354
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 74000 characters in sequence are not A, C, G, or T
File 66 of 100
Found at i:15595418 original size:159 final size:159
Alignment explanation
Indices: 15595115--15595703 Score: 505
Period size: 158 Copynumber: 3.7 Consensus size: 159
15595105 ACTCCATATG
* * * * *
15595115 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGACACTCAAC
1 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCACTGAGC
* * ** * *
15595180 CGGTC-AGAGAGGCAGAATGTACATGCCGGGGATCGACCCGGTCCCTCC-CTATGTGCTGTCGAT
66 CGGTCTAGAGAGGCAGAATGCACAAG-TAGGGATCGACTCGGTCCC-CCTCTACGTGCTGTCGAT
* * *
15595243 CCTACTACCACAACCCTCGATCTGGTCCGAT
129 CCTGCTGCCACAACCCTCGATCTGGTCTGAT
* * *
15595274 CTTAGAC-TGGGAATGAACTCTGTATGCATAAGTCAACCCATGAAACGAGCATGCGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCACTGAG
* * * * ** *
15595338 CCGGCCGA-AGAGGCATAATGCACAAGTAGAGGATCGACTTGGTCCCCCTCTACGTGCTACCAAT
65 CCGGTCTAGAGAGGCAGAATGCACAAGTAG-GGATCGACTCGGTCCCCCTCTACGTGCTGTCGAT
* * **
15595402 CCCGCTGCCACGACCCTCGATCTGG-CTGGG
129 CCTGCTGCCACAACCCTCGATCTGGTCTGAT
* ** * * ** ** * *
15595432 GTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGCGTATGGGTGCTTAAC
1 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCACTGAGC
* * * * *
15595497 GGGT-TAGAGAGGCAGAATACGCAAGTCAGGGATCGGCTCGGTCCCCCT-TGCGTGCTGTCGATC
66 CGGTCTAGAGAGGCAGAATGCACAAGT-AGGGATCGACTCGGTCCCCCTCTACGTGCTGTCGATC
* * * * *
15595560 TTGCTGTCGCAACCCTCGATCCGGTTTGAT
130 CTGCTGCCACAACCCTCGATCTGGTCTGAT
* * *
15595590 CTTAGAC-TAGGAATGAACT-TCATATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCACTGA
1 CTTAGACAT-GGAATGAACTCT-GTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCACTGA
* * * ** * * *
15595653 GTCGGTCTA-ACAGGCATAATGCACAAGCCGGGATCGGCCCGGTCCACCTCT
64 GCCGGTCTAGAGAGGCAGAATGCACAAGTAGGGATCGACTCGGTCCCCCTCT
15595704 GCATGCTGCT
Statistics
Matches: 335, Mismatches: 83, Indels: 25
0.76 0.19 0.06
Matches are distributed among these distances:
157 49 0.15
158 160 0.48
159 125 0.37
160 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCACTGAGC
CGGTCTAGAGAGGCAGAATGCACAAGTAGGGATCGACTCGGTCCCCCTCTACGTGCTGTCGATCC
TGCTGCCACAACCCTCGATCTGGTCTGAT
Found at i:15595508 original size:158 final size:158
Alignment explanation
Indices: 15595114--15595552 Score: 429
Period size: 159 Copynumber: 2.8 Consensus size: 158
15595104 AACTCCATAT
* *
15595114 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGACACTCAA
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAA
* * ** * * ** *
15595179 CCGGTCAGAGAGGCAGAATGTACATGCCGGGGATCGACCCGGTCCCTCC-CTATGTGCTGTCGAT
66 CCGGTCAGAGAGGCAGAATGCACAAG-TAGGGATCGACTCGGTCCC-CCTCTACGTGCTACCAAT
*
15595243 CCTACTACCACAACCCTCGATCTGGTCCGA
129 CCCACTACCACAACCCTCGATCTGGTCCGA
* * * * * *
15595273 TCTTAGAC-TGGGAATGAACTCTGTATGCATAAGTCAACCCATGAAACGAGCATGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCA
* * * *
15595337 GCCGG-CCGAAGAGGCATAATGCACAAGTAGAGGATCGACTTGGTCCCCCTCTACGTGCTACCAA
65 ACCGGTCAG-AGAGGCAGAATGCACAAGTAG-GGATCGACTCGGTCCCCCTCTACGTGCTACCAA
* * * * *
15595401 TCCCGCTGCCACGACCCTCGATCTGG-CTGG
128 TCCCACTACCACAACCCTCGATCTGGTCCGA
* ** ** * *
15595431 GGTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGCGTATGGGTGCTTAA
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAA
* * * * * *
15595496 CGGGTTAGAGAGGCAGAATACGCAAGTCAGGGATCGGCTCGGTCCCCCT-TGCGTGCT
66 CCGGTCAGAGAGGCAGAATGCACAAGT-AGGGATCGACTCGGTCCCCCTCTACGTGCT
15595553 GTCGATCTTG
Statistics
Matches: 224, Mismatches: 49, Indels: 16
0.78 0.17 0.06
Matches are distributed among these distances:
157 7 0.03
158 94 0.42
159 123 0.55
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAA
CCGGTCAGAGAGGCAGAATGCACAAGTAGGGATCGACTCGGTCCCCCTCTACGTGCTACCAATCC
CACTACCACAACCCTCGATCTGGTCCGA
Found at i:15595740 original size:21 final size:21
Alignment explanation
Indices: 15595701--15595740 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
15595691 CCGGTCCACC
* * *
15595701 TCTGCATGCTGCTGGTCCCCT
1 TCTGCATGCTACCGATCCCCT
15595722 TCTGCATGCTACCGATCCC
1 TCTGCATGCTACCGATCCC
15595741 GCTGCCATAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.10, C:0.40, G:0.20, T:0.30
Consensus pattern (21 bp):
TCTGCATGCTACCGATCCCCT
Found at i:15595968 original size:26 final size:26
Alignment explanation
Indices: 15595927--15595982 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
15595917 TCGGTCTGAT
*
15595927 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15595953 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15595979 CTTA
1 CTTA
15595983 AGTCAACTCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15598121 original size:158 final size:156
Alignment explanation
Indices: 15597618--15598121 Score: 410
Period size: 158 Copynumber: 3.2 Consensus size: 156
15597608 GTCTAATCCA
** * * * ** * ** *
15597618 ATCTTAGACTACGAATGAACTCCGTATGCCTAAACGAACCCACAAAATAAGCGTACGGGTGATCA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAGGAGCGTGCGGGCAATGA
*** * * * *
15597683 GCCAACCGGAGAGGCAGAATGAGCAAGCC-AGGGACCGACCCGGTCCCTCTTGCGTGCTGTCAAT
66 GCTGGCCGGAGAGGCAGAATGCGCAAGCCGA-GGATCGACCCGATCCCTC-TGCGTGCTGTCGAT
* * *
15597747 CCTTCTGCTGCAACCCTCGGTCTGGTCTA
129 CCTACTGC-GCAACCCTCGGTCCGGTCTG
* * **
15597776 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTTTGGGCAATGA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAGGAGCGTGCGGGCAATGA
* * * * * *
15597841 GCTGGCCGAAGAGGCATAATGCGCAGGCTGGGGATCGGCCC-AGTCCCCCTCTGCGTGCTGTCGA
66 GCTGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGA-T--CCCTCTGCGTGCTGTCGA
* * *
15597905 TCCTGCTACCACAACCCT-GCGTCCGGT-TGG
128 TCCTACT-GCGCAACCCTCG-GTCCGGTCT-G
** * * **
15597935 GGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGA-CGTGCGGGCGCT
1 ATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA-GGAGCGTGCGGGCAAT
* ** * * *
15597998 TAGCCT-GTTGGAGAGGCAGAATGCGCAAGCCGAAGATCGACCCGATCCCTTCTACGTGCTATCG
64 GAG-CTGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCC-TCTGCGTGCTGTCG
15598062 ATCCTACTGTCGCAACCCTCGGTCCGGTCTG
127 ATCCTACTG-CGCAACCCTCGGTCCGGTCTG
*
15598093 ATCTTACACTGGGAATGAACTCCGTATGC
1 ATCTTAGACTGGGAATGAACTCCGTATGC
15598122 TTAGACTAGG
Statistics
Matches: 271, Mismatches: 59, Indels: 32
0.75 0.16 0.09
Matches are distributed among these distances:
157 4 0.01
158 143 0.53
159 112 0.41
160 12 0.04
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (156 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAGGAGCGTGCGGGCAATGA
GCTGGCCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCTCTGCGTGCTGTCGATCC
TACTGCGCAACCCTCGGTCCGGTCTG
Found at i:15598124 original size:26 final size:26
Alignment explanation
Indices: 15598095--15598147 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15598085 CCGGTCTGAT
15598095 CTTACACT-GGGAATGAACTCCGTATG
1 CTTACACTAGGG-ATGAACTCCGTATG
*
15598121 CTTAGACTAGGGATGAACTCCGTATG
1 CTTACACTAGGGATGAACTCCGTATG
15598147 C
1 C
15598148 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTAGGGATGAACTCCGTATG
Found at i:15598307 original size:26 final size:26
Alignment explanation
Indices: 15598278--15598330 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15598268 CCGGTTCGAT
15598278 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
* *
15598304 CTTAGACATGGAATGATCTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
15598330 C
1 C
15598331 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:15598331 original size:183 final size:183
Alignment explanation
Indices: 15597936--15598489 Score: 631
Period size: 183 Copynumber: 3.0 Consensus size: 183
15597926 TCCGGTTGGG
* *
15597936 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACG-GACGTGCGGGCGCTTA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAG-CGTGCGGGCGCTCA
* * * * *
15598000 GCCTGTTGGAGAGGCAGAATGCGCAAGCCGAAGATCGACCCGAT--CCCTTCTACG-TGCTATCG
65 GCCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATTGACCCGATCCCCCTTC-AAGTTGC-A--G
* * *
15598062 ATCCTACTGTCGCAACCCTCGGTCCGG-TCTGATCTTACACTGGGAATGAACTCCGTAT
126 ATCCTACTGCCGCAACCCTCAGTCCGGTTC-GATCTTAGACTGGGAATGAACTCCGTAT
* * * *
15598120 GCTTAGAC-TAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGACGCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * *
15598184 GCCGGTCGGAGAGGCAGAATGCGCAAG-CTAGGGATTGGCTCGATCCCCCTGCAAGTTGCAGATC
65 GCCGGTCGGAGAGGCAGAATGCGCAAGCCGA-GGATTGACCCGATCCCCCTTCAAGTTGCAGATC
*
15598248 CTACTGCCGCAACCCTCAGTCCGGTTCGATCTTAGACTAGGAATGAACTCCGTAT
129 CTACTGCCGCAACCCTCAGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTAT
* * *
15598303 GCTTAGACATGGAATGATCTCTGTATGCCTAAGCCAACCCATGAAACAAGCGT-CTGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGC-GGGCGCTCA
* * * ***
15598367 GCCGATCGGAGAGGCAGAATGCACAAGCCGAGGACTGACCCGATCCCCCTTTGTGTTCTGTC-GA
65 GCCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATTGACCCGATCCCCCTTCAAG-T-TG-CAGA
* * * * * *
15598431 TCTTGCTGCCGTAACCTTCAGTCTGGTTCAATCTTAGACTGGGAATGAACTCCGTAT
127 TCCTACTGCCGCAACCCTCAGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTAT
15598488 GC
1 GC
15598490 CTAAGTCGAC
Statistics
Matches: 314, Mismatches: 43, Indels: 25
0.82 0.11 0.07
Matches are distributed among these distances:
182 1 0.00
183 150 0.48
184 94 0.30
185 60 0.19
186 9 0.03
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (183 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGATTGACCCGATCCCCCTTCAAGTTGCAGATCCT
ACTGCCGCAACCCTCAGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:15598650 original size:26 final size:26
Alignment explanation
Indices: 15598621--15598673 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15598611 CCGATTCGAT
15598621 CTTAGACTAGGAATGAACTCCGCATG
1 CTTAGACTAGGAATGAACTCCGCATG
* *
15598647 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGCATG
15598673 C
1 C
15598674 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGCATG
Found at i:15599628 original size:25 final size:26
Alignment explanation
Indices: 15599593--15599641 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
15599583 GTTTTCTATT
*
15599593 TTTCATGATTTTTGAAACTTTTTTGG
1 TTTCATGATTTTTGAAAATTTTTTGG
*
15599619 TTTCA-GATTTTTTAAAATTTTTT
1 TTTCATGATTTTTGAAAATTTTTT
15599642 TGGAAAGAGT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 16 0.76
26 5 0.24
ACGTcount: A:0.22, C:0.06, G:0.10, T:0.61
Consensus pattern (26 bp):
TTTCATGATTTTTGAAAATTTTTTGG
Found at i:15599630 original size:26 final size:26
Alignment explanation
Indices: 15599593--15599644 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15599583 GTTTTCTATT
*
15599593 TTTCATGATTTTTGAAACTTTTTTGG
1 TTTCATGATTTTTAAAACTTTTTTGG
*
15599619 TTTCA-GATTTTTTAAAATTTTTTTGG
1 TTTCATGA-TTTTTAAAACTTTTTTGG
15599645 AAAGAGTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 2 0.09
26 21 0.91
ACGTcount: A:0.21, C:0.06, G:0.13, T:0.60
Consensus pattern (26 bp):
TTTCATGATTTTTAAAACTTTTTTGG
Found at i:15600103 original size:26 final size:26
Alignment explanation
Indices: 15600065--15600117 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
15600055 GGCTCAAAAT
15600065 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
15600091 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
15600117 C
1 C
15600118 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:15601142 original size:26 final size:26
Alignment explanation
Indices: 15601106--15601184 Score: 124
Period size: 26 Copynumber: 3.0 Consensus size: 26
15601096 CCAGTCCTAT
15601106 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
15601132 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15601158 CTTAGACTGGGGAA-GAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
15601184 C
1 C
15601185 CTAAGTGAAC
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
26 44 0.92
27 4 0.08
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15601819 original size:355 final size:355
Alignment explanation
Indices: 15601325--15601964 Score: 888
Period size: 355 Copynumber: 1.8 Consensus size: 355
15601315 CGATTCAGTC
* * * *
15601325 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAGACAAGGAATGAACTCCGTATGCCTAAGCCA
1 TGATCTTAGACAGAGAATGAACTCCGTACGCCTAGACAAGAAATGAACTCCGTATGCCTAAGCCA
** * * * *
15601390 ACCCACGAAATGAGAGTACGGGTGCTCAGCCGATCGAAGAGGCAGAATGTGTAAGCTGGGGACCG
66 ACCCACGAAACAAGAGTACGGGTGCTCAGCCGACCGAAGAGGCAGAATGCGCAAGCTGGGGACCA
* *
15601455 ACCCGGTCCCCCCTACATGCTATTGATCCTGCTACCGCAAC-CTTCAGTCCGGTCTAATCTTAGA
131 ACCCGGTCCCCCCTACATGCTATCGATCCTGCTACCGCAACTC-TCAGTCCGATCTAATCTTAGA
* * * *
15601519 CTGGGAATAAACTTCATATGCGTAAGTCAACCCACGAAACGAGCATTCGGGCGCTGAGCCGACCA
195 CTGGGAATAAACTCCATATGCCTAAGTCAACCCACGAAACAAGCATTCGGGCGCTGAACCGACCA
* * *
15601584 GAGAGGCATAATGCGCAAGTCGGGGATCGACCCGATCCCCCTCTGTGTGCTGTCGATCCTGCTGC
260 GAAAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGTGTGCTGTCGATCCTGCTGC
15601649 TGGCCCTACAACTGCAACCTTCGATCTGGTA
325 TGGCCCTACAACTGCAACCTTCGATCTGGTA
* * *
15601680 TGATCTTAGACAGAGAATGAACTCTGTACGCTTAGACATGAAATGAACTCCGTATGCCTAAGCCA
1 TGATCTTAGACAGAGAATGAACTCCGTACGCCTAGACAAGAAATGAACTCCGTATGCCTAAGCCA
* * * *
15601745 ACCCATGAAACAAGCGTACGGGTGCTCAGCCGACCGGAGAGGCAGAATGCGCAAG-TCGGGGACT
66 ACCCACGAAACAAGAGTACGGGTGCTCAGCCGACCGAAGAGGCAGAATGCGCAAGCT-GGGGACC
* * ** * * *
15601809 AACTCGGTCCCCTCTATGTGCTATCGATCCTGCTGCTGCAACTCTCAGTCCGATCTGATCTTAGA
130 AACCCGGTCCCCCCTACATGCTATCGATCCTGCTACCGCAACTCTCAGTCCGATCTAATCTTAGA
* * * * * *
15601874 CTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACAAGCGTTCGGGCGTTGAACCGATCG
195 CTGGGAATAAACTCCATATGCCTAAGTCAACCCACGAAACAAGCATTCGGGCGCTGAACCGACCA
*
15601939 GAAAGGTAGAATGCGCAAGCCGGGGA
260 GAAAGGCAGAATGCGCAAGCCGGGGA
15601965 CTGGCCTGGT
Statistics
Matches: 243, Mismatches: 40, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
354 1 0.00
355 241 0.99
356 1 0.00
ACGTcount: A:0.27, C:0.27, G:0.26, T:0.21
Consensus pattern (355 bp):
TGATCTTAGACAGAGAATGAACTCCGTACGCCTAGACAAGAAATGAACTCCGTATGCCTAAGCCA
ACCCACGAAACAAGAGTACGGGTGCTCAGCCGACCGAAGAGGCAGAATGCGCAAGCTGGGGACCA
ACCCGGTCCCCCCTACATGCTATCGATCCTGCTACCGCAACTCTCAGTCCGATCTAATCTTAGAC
TGGGAATAAACTCCATATGCCTAAGTCAACCCACGAAACAAGCATTCGGGCGCTGAACCGACCAG
AAAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGTGTGCTGTCGATCCTGCTGCT
GGCCCTACAACTGCAACCTTCGATCTGGTA
Found at i:15601998 original size:158 final size:157
Alignment explanation
Indices: 15601721--15602158 Score: 524
Period size: 158 Copynumber: 2.8 Consensus size: 157
15601711 TTAGACATGA
* * * *
15601721 AATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTACGGGTGCTCAGCCGACCGGAGAG
1 AATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTTCGGGCGCTGAGCCGACCGGAGAG
* * *
15601786 GCAGAATGCGCAAGTCGGGGACT-AACTCGGTCCCCTCTATGTGCTATCGATCCTGCTG-CTGCA
66 GTAGAATGCGCAAGCCGGGGACTGACCT-GGTCCCC-CTATGTGCTATCGATCCTGCTGTC-GCA
* **
15601849 ACTCTCAG-TCCGATCTGATCTTAGACTGGG
128 ACCCT-AGATCCGATCCAATCTTAGACTGGG
* * * * *
15601879 AATGAACTCCATATGCCTAAGTCAACCCATGAAACAAGCGTTCGGGCGTTGAACCGATCGGAAAG
1 AATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTTCGGGCGCTGAGCCGACCGGAGAG
* *
15601944 GTAGAATGCGCAAGCCGGGGACTGGCCTGGTCCCTCCTATGTGCTATTGATCCTGCTGTCGCAAC
66 GTAGAATGCGCAAGCCGGGGACTGACCTGGTCCC-CCTATGTGCTATCGATCCTGCTGTCGCAAC
* * *
15602009 CCTTGATCTGGTCCAATCTTAGACTGGG
130 CCTAGATCCGATCCAATCTTAGACTGGG
* * * * * *
15602037 AATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCATTCGGGCACTGAGCTGACCAGAGAG
1 AATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTTCGGGCGCTGAGCCGACCGGAGAG
* * *
15602102 GTATAATGCGCAAGCCAGGGA-TCGACCCGGTCCCCCCTATGTGCTATCGATCCTGCT
66 GTAGAATGCGCAAGCCGGGGACT-GACCTGGT-CCCCCTATGTGCTATCGATCCTGCT
15602159 ACTGATCCTG
Statistics
Matches: 238, Mismatches: 36, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
157 2 0.01
158 229 0.96
159 7 0.03
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (157 bp):
AATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTTCGGGCGCTGAGCCGACCGGAGAG
GTAGAATGCGCAAGCCGGGGACTGACCTGGTCCCCCTATGTGCTATCGATCCTGCTGTCGCAACC
CTAGATCCGATCCAATCTTAGACTGGG
Found at i:15602375 original size:512 final size:513
Alignment explanation
Indices: 15601357--15602440 Score: 1392
Period size: 512 Copynumber: 2.1 Consensus size: 513
15601347 TCCGTATGCC
* * ** * * * *
15601357 TAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGAGTACGGGTGCTCAGCCG
1 TAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTTCGGGCGCTCAACCG
* * *
15601422 ATCGAAGAGGCAGAATGTGTAAGCTGGGGACCGACCCGGTCCCCCCTACATGCTATTGATCCTGC
66 ATCGAAGAGGCAGAATGCGCAAGCCGGGGACCGACCCGGTCCCCCCTACATGCTATTGATCCTGC
* * *
15601487 TACCGCAACCTTCAGTCCGGTCTAATCTTAGACTGGGAATAAACTTCATATGCGTAAGTCAACCC
131 TACCGCAACCTTCAGTCCGGTCCAATCTTAGACTGGGAATAAACTCCATATGCATAAGTCAACCC
* * *
15601552 ACGAAACGAGCATTCGGGCGCTGAGCCGACCAGAGAGGCATAATGCGCAAGTCGGGGATCGACCC
196 ACGAAACGAGCATTCGGGCACTGAGCCGACCAGAGAGGCATAATGCGCAAGCCAGGGATCGACCC
* * * * **
15601617 GATCCCCCTCTGTGTGCTGTCGATCCTGCTGCTGGCCCTACAACTGCAACCTTCGATCTGGTATG
261 GATCCCCCTCTATGTGCTATCGATCCTGCTACTGACCCTACAACTGCAACCTTCGATCTGGTACA
15601682 ATCTTAGACAGAGAATGAACTCTGTACGCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAAC
326 ATCTTAGACAGAGAATGAACTCTGTACGCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAAC
* * *
15601747 CCATGAAACAAGCGTACGGGTGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGTCGGGGACTAAC
391 CCACGAAACAAGCGTACGGGTGCTCAGCAGACCGGAAAGGCAGAATGCGCAAGTCGGGGACTAAC
* * * ** * *
15601812 TCGGTCCCCTCTATGTGCTATCGATCCTGCTGCTGCAACTCTCAGTCCGATCTGATCT
456 CCGGTCCCCCCTACGTGCTATAAATCCTACTGCTGCAACCCTCAGTCCGATCTGATCT
* * * * *
15601870 TAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACAAGCGTTCGGGCGTTGAACCG
1 TAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTTCGGGCGCTCAACCG
* * * * * **
15601935 ATCGGAA-AGGTAGAATGCGCAAGCCGGGGACTGGCCTGGTCCCTCCTATGTGCTATTGATCCTG
66 ATC-GAAGAGGCAGAATGCGCAAGCCGGGGACCGACCCGGTCCCCCCTACATGCTATTGATCCTG
** * * * *
15601999 CTGTCGCAACCCTTGA-TCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAAC
130 CTACCGCAA-CCTTCAGTCCGGTCCAATCTTAGACTGGGAATAAACTCCATATGCATAAGTCAAC
* * *
15602063 CCATGAAACGAGCATTCGGGCACTGAGCTGACCAGAGAGGTATAATGCGCAAGCCAGGGATCGAC
194 CCACGAAACGAGCATTCGGGCACTGAGCCGACCAGAGAGGCATAATGCGCAAGCCAGGGATCGAC
* * *** *
15602128 CCGGTCCCCC-CTATGTGCTATCGATCCTGCTACTGATCCTGTTA-TAGCAACCTTCGGTCTGGT
259 CCGATCCCCCTCTATGTGCTATCGATCCTGCTACTGACCCTACAACT-GCAACCTTCGATCTGGT
* * * *
15602191 CCAATCTTAGACTGGGAATGAACTCTGTATGCTTAGACAT-AGAATGAACTCCGTATGCCTAAGC
323 ACAATCTTAGACAGAGAATGAACTCTGTACGCTTAGACATGA-AATGAACTCCGTATGCCTAAGC
** *
15602255 CAACCCACGAAATGAGCGTACGGGTGCTCAGTCAG-TCGGAAAGGCAGAATGCGCAAGTCGGGGA
387 CAACCCACGAAACAAGCGTACGGGTGCTCAG-CAGACCGGAAAGGCAGAATGCGCAAGTCGGGGA
* ** * *
15602319 TTGGCCCGGTCCCCCCTACGTGCTATAAATCCTACT-ATCGGAACCCTC-GATCCGATCTGATCT
451 CTAACCCGGTCCCCCCTACGTGCTATAAATCCTACTGCT-GCAACCCTCAG-TCCGATCTGATCT
*
15602382 TAGACTAGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAACAAGCGTTCGGGCGCT
1 TAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTTCGGGCGCT
15602441 GAGCCACCCA
Statistics
Matches: 487, Mismatches: 77, Indels: 15
0.84 0.13 0.03
Matches are distributed among these distances:
511 4 0.01
512 254 0.52
513 221 0.45
514 8 0.02
ACGTcount: A:0.26, C:0.28, G:0.25, T:0.22
Consensus pattern (513 bp):
TAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTTCGGGCGCTCAACCG
ATCGAAGAGGCAGAATGCGCAAGCCGGGGACCGACCCGGTCCCCCCTACATGCTATTGATCCTGC
TACCGCAACCTTCAGTCCGGTCCAATCTTAGACTGGGAATAAACTCCATATGCATAAGTCAACCC
ACGAAACGAGCATTCGGGCACTGAGCCGACCAGAGAGGCATAATGCGCAAGCCAGGGATCGACCC
GATCCCCCTCTATGTGCTATCGATCCTGCTACTGACCCTACAACTGCAACCTTCGATCTGGTACA
ATCTTAGACAGAGAATGAACTCTGTACGCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAAC
CCACGAAACAAGCGTACGGGTGCTCAGCAGACCGGAAAGGCAGAATGCGCAAGTCGGGGACTAAC
CCGGTCCCCCCTACGTGCTATAAATCCTACTGCTGCAACCCTCAGTCCGATCTGATCT
Found at i:15602470 original size:512 final size:512
Alignment explanation
Indices: 15601357--15602630 Score: 1409
Period size: 513 Copynumber: 2.5 Consensus size: 512
15601347 TCCGTATGCC
* * ** * * * *
15601357 TAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGAGTACGGGTGCTCAGCCG
1 TAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTTCGGGCGCTGAGCCG
* * *
15601422 ATCGAAGAGGCAGAATGTGTAAGCTGGGGACCGACCCGGTCCCCCCTACATGCTATTGATCCTGC
66 ATCGAA-AGGCAGAATGCGCAAGCCGGGGACCGACCCGGTCCCCCCTACATGCTATTGATCCTGC
* * *
15601487 TACCGCAACCTTCAGTCCGGTCTAATCTTAGACTGGGAATAAACTTCATATGCGTAAGTCAACCC
130 TACCGCAACCTTCAGTCCGGTCCAATCTTAGACTGGGAATAAACTCCATATGCATAAGTCAACCC
* * *
15601552 ACGAAACGAGCATTCGGGCGCTGAGCCGACCAGAGAGGCATAATGCGCAAGTCGGGGATCGACCC
195 ACGAAACGAGCATTCGGGCACTGAGCCGACCAGAGAGGCATAATGCGCAAGCCAGGGATCGACCC
* * * * **
15601617 GATCCCCCTCTGTGTGCTGTCGATCCTGCTGCTGGCCCTACAACTGCAACCTTCGATCTGGTATG
260 GATCCCCCTCTATGTGCTATCGATCCTGCTACTGACCCTACAACTGCAACCTTCGATCTGGTACA
15601682 ATCTTAGACAGAGAATGAACTCTGTACGCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAAC
325 ATCTTAGACAGAGAATGAACTCTGTACGCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAAC
* * *
15601747 CCATGAAACAAGCGTACGGGTGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGTCGGGGACTAAC
390 CCACGAAACAAGCGTACGGGTGCTCAGCAGACCGGAAAGGCAGAATGCGCAAGTCGGGGACTAAC
* * * ** * *
15601812 TCGGTCCCCTCTATGTGCTATCGATCCTGCTGCTGCAACTCTCAGTCCGATCTGATCT
455 CCGGTCCCCCCTACGTGCTATAAATCCTACTGCTGCAACCCTCAGTCCGATCTGATCT
* * * * *
15601870 TAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACAAGCGTTCGGGCGTTGAACCG
1 TAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTTCGGGCGCTGAGCCG
* * * * * **
15601935 ATCGGAAAGGTAGAATGCGCAAGCCGGGGACTGGCCTGGTCCCTCCTATGTGCTATTGATCCTGC
66 ATC-GAAAGGCAGAATGCGCAAGCCGGGGACCGACCCGGTCCCCCCTACATGCTATTGATCCTGC
** * * * *
15602000 TGTCGCAACCCTTGA-TCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACC
130 TACCGCAA-CCTTCAGTCCGGTCCAATCTTAGACTGGGAATAAACTCCATATGCATAAGTCAACC
* * *
15602064 CATGAAACGAGCATTCGGGCACTGAGCTGACCAGAGAGGTATAATGCGCAAGCCAGGGATCGACC
194 CACGAAACGAGCATTCGGGCACTGAGCCGACCAGAGAGGCATAATGCGCAAGCCAGGGATCGACC
* * *** * *
15602129 CGGTCCCCC-CTATGTGCTATCGATCCTGCTACTGATCCTGTTA-TAGCAACCTTCGGTCTGGTC
259 CGATCCCCCTCTATGTGCTATCGATCCTGCTACTGACCCTACAACT-GCAACCTTCGATCTGGTA
* * *
15602192 CAATCTTAGACTGGGAATGAACTCTGTATGCTTAGACAT-AGAATGAACTCCGTATGCCTAAGCC
323 CAATCTTAGACAGAGAATGAACTCTGTACGCTTAGACATGA-AATGAACTCCGTATGCCTAAGCC
** * *
15602256 AACCCACGAAATGAGCGTACGGGTGCTCAGTCAG-TCGGAAAGGCAGAATGCGCAAGTCGGGGAT
387 AACCCACGAAACAAGCGTACGGGTGCTCAG-CAGACCGGAAAGGCAGAATGCGCAAGTCGGGGAC
** * *
15602320 TGGCCCGGTCCCCCCTACGTGCTATAAATCCTACT-ATCGGAACCCTC-GATCCGATCTGATCT
451 TAACCCGGTCCCCCCTACGTGCTATAAATCCTACTGCT-GCAACCCTCAG-TCCGATCTGATCT
*
15602382 TAGACTAGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAACAAGCGTTCGGGCGCTGAGCC-
1 TAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTTCGGGCGCTGAGCCG
* * * * * * * * * * *** * *
15602446 ACCCAGAAAGGCATAATACGCAAGCCGAGGATCGACCTGATCCCTCTCTGCATGTTGCCGGTCCC
66 A-TC-GAAAGGCAGAATGCGCAAGCCGGGGACCGACCCGGTCCC-CCCTACATGCTATTGATCCT
* * * ** * * * *
15602511 GCTACCACAACCCTT-GGTCCGG-CTAGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCC
128 GCTACCGCAA-CCTTCAGTCCGGTCCA-ATCTTAGAC-TGGGAATAAACTCCATATGCATAAGTC
* * * * * * *
15602573 AACCCATGAAACGGGCGTACGGGCACTCAGCCGACCAGAGAGGCAGAATACGCAAGCC
190 AACCCACGAAACGAGCATTCGGGCACTGAGCCGACCAGAGAGGCATAATGCGCAAGCC
15602631 GAAGATCGGC
Statistics
Matches: 631, Mismatches: 118, Indels: 24
0.82 0.15 0.03
Matches are distributed among these distances:
511 5 0.01
512 292 0.46
513 325 0.52
514 9 0.01
ACGTcount: A:0.26, C:0.28, G:0.25, T:0.21
Consensus pattern (512 bp):
TAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTTCGGGCGCTGAGCCG
ATCGAAAGGCAGAATGCGCAAGCCGGGGACCGACCCGGTCCCCCCTACATGCTATTGATCCTGCT
ACCGCAACCTTCAGTCCGGTCCAATCTTAGACTGGGAATAAACTCCATATGCATAAGTCAACCCA
CGAAACGAGCATTCGGGCACTGAGCCGACCAGAGAGGCATAATGCGCAAGCCAGGGATCGACCCG
ATCCCCCTCTATGTGCTATCGATCCTGCTACTGACCCTACAACTGCAACCTTCGATCTGGTACAA
TCTTAGACAGAGAATGAACTCTGTACGCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAACC
CACGAAACAAGCGTACGGGTGCTCAGCAGACCGGAAAGGCAGAATGCGCAAGTCGGGGACTAACC
CGGTCCCCCCTACGTGCTATAAATCCTACTGCTGCAACCCTCAGTCCGATCTGATCT
Found at i:15602738 original size:26 final size:26
Alignment explanation
Indices: 15602697--15602749 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15602687 CCGGTCTGAT
15602697 CTTAGACTGGAAATGAACTCCATATG
1 CTTAGACTGGAAATGAACTCCATATG
** *
15602723 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCATATG
15602749 C
1 C
15602750 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCATATG
Found at i:15604165 original size:26 final size:26
Alignment explanation
Indices: 15604127--15604179 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15604117 GGCTCAAACT
15604127 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15604153 CTTAGACAT-GGAATGCACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15604179 C
1 C
15604180 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15604673 original size:159 final size:157
Alignment explanation
Indices: 15604348--15605017 Score: 551
Period size: 159 Copynumber: 4.2 Consensus size: 157
15604338 CTTAGACATA
* * * * * * * * *
15604348 GAATAAACTCCGTATGCTTAAGCCAACACACGAAACGAGCGTGCAGGCGCTCAGCCGACCGGAGA
1 GAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTTCGGGCGCTGAGCCG-CCGAAGA
* * * * * * * * * *
15604413 GGTAGAATACGCAAGTCGAGGA-CCAGCCCGGTGCCCC-CTGCATGCTATCGATCCTGCTGCCAC
65 GGCATAATGCGCAAGCCGGGGATCGA-CCCGATCCCCCTCTGCATGCTGTCGATCCTGCTACCAC
* * * * **
15604476 AACCCTCAGTCCGATCCGATCTTAGACTGG
129 AACCCTCGGTCTGGT-AGGGCTTAGACTGG
* * *
15604506 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCGCTGAGCCAGCC-ATAG
1 GAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTTCGGGCGCTGAGCC-GCCGA-AG
* * **
15604570 AGGCATAATGTGCAAGCCGGGGATCGACCCGATCCCCCTCTGCATGCTGTTGATCCCACTACCAC
64 AGGCATAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGCATGCTGTCGATCCTGCTACCAC
* *
15604635 AACCCTCGGTTTGGCTGGGGCTTAGACAT-G
129 AACCCTCGGTCTGG-TAGGGCTTAGAC-TGG
* * * * * * * * * *
15604665 GAATGAACTCCCTATTCCTAAGCCAACTCATGAAACGGGCATGCAGGCACTCAACCGGCCGAAGG
1 GAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTTCGGGCGCTGAGCC-GCCGAAGA
* * * * * * * ** * *
15604730 GGCAGAATGCGTAAGTCGAGGATCGACCTGGTCCCCCCCTGTGTGCTGTCGATCCTGCTATCGCA
65 GGCATAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGCATGCTGTCGATCCTGCTACCACA
**
15604795 ACCCTCGGTCTGGTCCA-ATCTTAGACTGG
130 ACCCTCGGTCTGGT--AGGGCTTAGACTGG
* * * * * * *
15604824 GAATGAACTCCGTATGCCTAAGTCAACACATGAAACAAGCGTTCGAGTGCTGAGCCGACCGAAAA
1 GAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTTCGGGCGCTGAGCCG-CCGAAGA
* * * * *
15604889 GGCATAATGCGCAACCCGGGGATCGACTCGATCCCCCTCTGCATGCTATCGGTCCTGCTGCCACA
65 GGCATAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGCATGCTGTCGATCCTGCTACCACA
*
15604954 ACCCTCGATCTGGTTAGGGCTTAGACAT-G
130 ACCCTCGGTCTGG-TAGGGCTTAGAC-TGG
15604983 GAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
1 GAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
15605018 TGGGGGGTGT
Statistics
Matches: 398, Mismatches: 100, Indels: 27
0.76 0.19 0.05
Matches are distributed among these distances:
158 83 0.21
159 310 0.78
160 5 0.01
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.19
Consensus pattern (157 bp):
GAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTTCGGGCGCTGAGCCGCCGAAGAG
GCATAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGCATGCTGTCGATCCTGCTACCACAA
CCCTCGGTCTGGTAGGGCTTAGACTGG
Found at i:15605092 original size:318 final size:318
Alignment explanation
Indices: 15604337--15605157 Score: 911
Period size: 318 Copynumber: 2.6 Consensus size: 318
15604327 AACTCCGTAT
* * * * * * * * * *
15604337 GCTTAGACATAGAATAAACTCCGTATGCTTAAGCCAACACACGAAACGAGCGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCAGGCACTCAA
* *** * * * **
15604402 CCGACCGGAGAGGTAGAATACGCAAGTCGAGGA-CCAGCCCGGTGCCCC-CTGCATGCTATCGAT
66 CCGACCGAAGACACAGAATACGCAAGTCGAGGATCGA-CCTGGTCCCCCACTGTGTGCTATCGAT
* * *
15604465 CCTGCTGCCACAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
130 CCTGCTACCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * * *
15604530 AACCCACGAAACGAGCGTTCGGGCGCTGAGCCAGCCATAGAGGCATAATGTGCAAGCCGGGGATC
195 AACACACGAAACAAGCGTTCGAGCGCTGAGCCAGCCATAAAGGCATAATGCGCAACCCGGGGATC
* * * * *
15604595 GACCCGATCCCCCTCTGCATGCTGTTGATCCCACTACCACAACCCTCGGTTTGGCTGGG
260 GACCCGATCCCCCTCTGCATGCTATCGATCCCACTACCACAACCCTCGATCTGGCTAGG
* *
15604654 GCTTAGACATGGAATGAACTCCCTATTCCTAAGCCAACTCATGAAACGGGCATGCAGGCACTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCAGGCACTCAA
* *** * * * *
15604719 CCGGCCGAAGGGGCAGAATGCGTAAGTCGAGGATCGACCTGGTCCCCCCCTGTGTGCTGTCGATC
66 CCGACCGAAGACACAGAATACGCAAGTCGAGGATCGACCTGGTCCCCCACTGTGTGCTATCGATC
* * * *
15604784 CTGCTATCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
131 CTGCTACCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* *
15604849 ACACATGAAACAAGCGTTCGAGTGCTGAGCC-GACCGA-AAAGGCATAATGCGCAACCCGGGGAT
196 ACACACGAAACAAGCGTTCGAGCGCTGAGCCAG-CC-ATAAAGGCATAATGCGCAACCCGGGGAT
* * ** * *
15604912 CGACTCGATCCCCCTCTGCATGCTATCGGTCCTGCTGCCACAACCCTCGATCTGGTTAGG
259 CGACCCGATCCCCCTCTGCATGCTATCGATCCCACTACCACAACCCTCGATCTGGCTAGG
* ** ** *
15604972 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGGGGTGTGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA-CGGGCATGCAGGCACTCA
** * *
15605037 GTCGACCGGAGACACA-AATTACGCAAG-CTGGGGATCGACCTGGT-CCCCACTGTGTGCTATCG
65 ACCGACCGAAGACACAGAA-TACGCAAGTC-GAGGATCGACCTGGTCCCCCACTGTGTGCTATCG
* * * *
15605099 ATCCAGCTACCGCAACCCTCAATCCGGTCTGATCTTAGACTAGGAATGAACTCC-TATGC
128 ATCCTGCTACCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
15605158 TTAGACTGGG
Statistics
Matches: 420, Mismatches: 77, Indels: 14
0.82 0.15 0.03
Matches are distributed among these distances:
317 96 0.23
318 282 0.67
319 42 0.10
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (318 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCAGGCACTCAA
CCGACCGAAGACACAGAATACGCAAGTCGAGGATCGACCTGGTCCCCCACTGTGTGCTATCGATC
CTGCTACCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
ACACACGAAACAAGCGTTCGAGCGCTGAGCCAGCCATAAAGGCATAATGCGCAACCCGGGGATCG
ACCCGATCCCCCTCTGCATGCTATCGATCCCACTACCACAACCCTCGATCTGGCTAGG
Found at i:15605836 original size:485 final size:484
Alignment explanation
Indices: 15605229--15606142 Score: 1126
Period size: 485 Copynumber: 1.9 Consensus size: 484
15605219 AGTCGGCCAG
* * * *
15605229 AGAGGCAGAATGCGTAAGCCGGGGACCAGCTTGGTCCCCCCTATGTGCTATCGATCCTGCTACTA
1 AGAGGCAGAATGCGCAAGCCAGGGACCAGCTCGGTCCCCCCTACGTGCTATCGATCCTGCTACTA
* * * * *
15605294 CAACCCTCAGTCCGGTCTGATTTTTGACTACGAATGAACTCCTTATGCCTAAGTCAACCCACGAA
66 CAACCCTCAGTCCGATCTGATCTTAGACTAAGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * * ** *
15605359 ACGAGCGTTCGGGCACTAAGCCGGTCGGGGAGGCATAATGTGCAAGCCAGGGATCAGCCCGGTCC
131 ACGAGCGTTCGGGCACTAAGCCGATCAGAGAGGCATAATGTGCAAGCCAAAGATCAGCCCGATCC
* * * *
15605424 CTCTCTGCGTGCT-ATCGGTCCCATTGCCACATCCTCGATCGG-A-CTGGGGCTTAGACATGCAA
196 CTCTCTACGTGCTGCT-GGTCCCACTGCCACAACC-C-AT-GGCAGCTGGGGCTTAGACATGCAA
* * * * * *
15605486 TGAACTCGCTATGCCTAAGCCAACCCACGAAAC-GGACGTGCGGGCGCTCAGTCGGTCGGAGAGG
257 TGAACTCCCTATGCCTAAGCCAACCCACGAAACAAG-CGTACGGGCGCTCAGCCAGTCGAAGAGG
* * * *
15605550 CAGAATACGTAAGCTAGAGATCGACCCGATCCCCCCTGCGTGCTACCGATCCTACGTCGTAA-CT
321 CAGAATACGTAAGCCAGAGATCGACCCGATCCCCCCTGCATGCTACCGATCCTACGCCGTAACCC
*
15605614 TTCAGTTCGATCCGATCTTAGACTGGGGAA-GAACTCCGTATGCCTAAGTCAACCCATGAAACGA
386 TTCA-TTCGATCCGATCTTAGACT-AGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGA
15605678 GCGTGCAGGCGCGTAGCTGGCCGAAAGGCCGATCGA
449 GCGTGCAGGCGCGTAGCTGGCCGAAAGGCCGATCGA
* * *
15605714 AGAGGCAGAATGCGCAAGCCAGGGATCAGCTCGG-CCCCTCCTACGTGCT-GCTGGTCCTGCTA-
1 AGAGGCAGAATGCGCAAGCCAGGGACCAGCTCGGTCCCC-CCTACGTGCTATC-GATCCTGCTAC
** *
15605776 TCACAACCCTTGGTCCGATCTGATCTTAGACTAAGAATGAACTCCGTATGCCTAAGTCAACCCAT
64 T-ACAACCCTCAGTCCGATCTGATCTTAGACTAAGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * ** * * *
15605841 GAAATGAGTGTTCGGGCGTTAAGCCGATTAGAGAGGCATAATGTGTAAGCCAAAGATTAGCCCGA
128 GAAACGAGCGTTCGGGCACTAAGCCGATCAGAGAGGCATAATGTGCAAGCCAAAGATCAGCCCGA
* *
15605906 TCTCTCTCTACGTGCTGCTGGTCCCACTGCCACAACCCATGGTCCAGCTGGGGCTTAGACATGGA
193 TCCCTCTCTACGTGCTGCTGGTCCCACTGCCACAACCCATGG--CAGCTGGGGCTTAGACATGCA
* * * *
15605971 ATGAACTCCCTATGCCTAAGCCAATCGATGAAACAAGCGTACGGGGGCTCAGCCAGTCGAAGAGG
256 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTACGGGCGCTCAGCCAGTCGAAGAGG
* * * * * * *
15606036 TAGAATGCGTAAGCCGGGGATCGACCTGGTCCCCCCTGCATGCTACCGATCCTATGCCGTAACCC
321 CAGAATACGTAAGCCAGAGATCGACCCGATCCCCCCTGCATGCTACCGATCCTACGCCGTAACCC
* * *
15606101 TTGATTCGATCCTATCTTAGACTAGGAATGAACTCTGTATGC
386 TTCATTCGATCCGATCTTAGACTAGGAATGAACTCCGTATGC
15606143 TGAGAGTGGG
Statistics
Matches: 359, Mismatches: 59, Indels: 21
0.82 0.13 0.05
Matches are distributed among these distances:
482 2 0.01
483 2 0.01
484 7 0.02
485 190 0.53
486 153 0.43
487 5 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (484 bp):
AGAGGCAGAATGCGCAAGCCAGGGACCAGCTCGGTCCCCCCTACGTGCTATCGATCCTGCTACTA
CAACCCTCAGTCCGATCTGATCTTAGACTAAGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
ACGAGCGTTCGGGCACTAAGCCGATCAGAGAGGCATAATGTGCAAGCCAAAGATCAGCCCGATCC
CTCTCTACGTGCTGCTGGTCCCACTGCCACAACCCATGGCAGCTGGGGCTTAGACATGCAATGAA
CTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTACGGGCGCTCAGCCAGTCGAAGAGGCAGAA
TACGTAAGCCAGAGATCGACCCGATCCCCCCTGCATGCTACCGATCCTACGCCGTAACCCTTCAT
TCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCA
GGCGCGTAGCTGGCCGAAAGGCCGATCGA
Found at i:15606330 original size:26 final size:26
Alignment explanation
Indices: 15606301--15606353 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15606291 CCGATTCGAT
15606301 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
15606327 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
15606353 C
1 C
15606354 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:15606354 original size:185 final size:184
Alignment explanation
Indices: 15605958--15606511 Score: 575
Period size: 185 Copynumber: 3.0 Consensus size: 184
15605948 TCCAGCTGGG
* * * * *
15605958 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAATCGATGAAACAAGCGTACGGGGGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
* * * *
15606023 CC-AGTCGAAGAGGTAGAATGCGTAAGCCGGGGATCGAC-CTGGTCCCCCCTGCATGCTACCGAT
66 CCGA-TCGAAGAGGTAGAATGCGTAAGTCGGGGATCGACTC-GATCCCCCCTACATGCTACTGAT
* * * * * * * *
15606086 CCT-ATGCCGTAACCCTTGATTCGATCCTATCTTAGACTAGGAATGAACTCTGTAT
129 CCTGCTACCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTAT
* * * * * *
15606141 GCTGAGA-GTGGGGAA-GAACTCTGTATGCCTATGTCAACCCACGAAACGAGCGTACGGGCG-TA
1 GCTTAGACAT--GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCT-
* * *
15606203 CAGCCGATCGGAGAGGCAGAATGCGTAAATCGGGGATCGACTCGATCCCCTCCTACATGCTACTG
63 CAGCCGATCGAAGAGGTAGAATGCGTAAGTCGGGGATCGACTCGATCCCC-CCTACATGCTACTG
* *
15606268 GTCCTGCTACCGCAACCCTCGATCCGATTCGATCTTAGACTGGGAATGAACTCCGTAT
127 ATCCTGCTACCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTAT
* * * *
15606326 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATATGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
* ** * * * *
15606391 TCGGCCGAAGAGGTAGAATGCGTAAGTCGAGGATCGGCTCGATCCCCCCTACGTGCT-GTCGATC
66 CCGATCGAAGAGGTAGAATGCGTAAGTCGGGGATCGACTCGATCCCCCCTACATGCTACT-GATC
* * * * * *
15606455 CTGCTATCACAACCTTC-AGTCTGGTCCGATCTTAGATTGGGAATGAACTCCGTAT
130 CTGCTACCGCAACCCTCGA-TCCGATCCGATCTTAGACTGGGAATGAACTCCGTAT
15606510 GC
1 GC
15606512 CTAAGTCAAC
Statistics
Matches: 303, Mismatches: 56, Indels: 23
0.79 0.15 0.06
Matches are distributed among these distances:
182 2 0.01
183 85 0.28
184 86 0.28
185 128 0.42
186 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.26, T:0.22
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
CCGATCGAAGAGGTAGAATGCGTAAGTCGGGGATCGACTCGATCCCCCCTACATGCTACTGATCC
TGCTACCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:15608074 original size:158 final size:159
Alignment explanation
Indices: 15607692--15608112 Score: 429
Period size: 158 Copynumber: 2.7 Consensus size: 159
15607682 GGTTTAGTCT
* * * * *
15607692 GATCTTAGATTGGGAATGAAC-TCTGCATGCCTATGTCAACCCACGAAATGAGCGTTCGGACGTT
1 GATCTTAGACTGGGAATGAACTTC-GTATGCCTAAGTCAACCCATGAAATGAGCGTTCGGACGCT
* * * * * *
15607756 GAGCC-AGCCGGAGAGGCATAATGCGCAAGCTGGGGATCGACCCGGTCCTTCTCTGCGTGCTGTT
65 CAGCCGA-CCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGGTCCTCCTCTACGTGCTGTT
* * ** *
15607820 GGTCCCACTACCACAACCCTCGATCTGGCTG
129 GATCCCACTACCACAACCCTCAATCCAGCTC
* * * * * * ** *
15607851 GAGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGAGGGCGCT
1 GATCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAGCGTTCGGACGCT
* * * *
15607915 CAGCCGACTGGAGAGGTAGAATGCATAAGCCGGGGATCGACCCGGTCC-CCTTTACGTGCTGTTG
65 CAGCCGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGGTCCTCCTCTACGTGCTGTTG
** * *
15607979 ATCCTGCTATCACAACCCTCAATCCAGTTC
130 ATCCCACTACCACAACCCTCAATCCAGCTC
* *
15608009 GATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAAACCATGAAATGAGCGTTCGGATGCTC
1 GATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAGCGTTCGGACGCTC
* * *
15608074 AGCCGACCAGAGAGGCA-AGATGCGCAAGCTGGGGATCGA
66 AGCCGACCGGAGAGGCAGA-ATGCACAAGCCGGGGATCGA
15608113 ACGGGTGGTA
Statistics
Matches: 207, Mismatches: 50, Indels: 11
0.77 0.19 0.04
Matches are distributed among these distances:
157 2 0.01
158 117 0.57
159 85 0.41
160 3 0.01
ACGTcount: A:0.25, C:0.27, G:0.28, T:0.21
Consensus pattern (159 bp):
GATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAGCGTTCGGACGCTC
AGCCGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGGTCCTCCTCTACGTGCTGTTGA
TCCCACTACCACAACCCTCAATCCAGCTC
Found at i:15609042 original size:26 final size:26
Alignment explanation
Indices: 15609013--15609066 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
15609003 AGTTCGATCT
*
15609013 TAGACTG-GGAATGAACTTCGTATGCC
1 TAGACTGAGG-ATGAACTCCGTATGCC
*
15609039 TAGACTGAGGATGAAGTCCGTATGCC
1 TAGACTGAGGATGAACTCCGTATGCC
15609065 TA
1 TA
15609067 AGTCAACCCA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
TAGACTGAGGATGAACTCCGTATGCC
Found at i:15609249 original size:26 final size:26
Alignment explanation
Indices: 15609220--15609272 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15609210 CCGGTCCGAT
15609220 CTTAGAC-TGAGAATGAACTCCGTATG
1 CTTAGACAT-AGAATGAACTCCGTATG
*
15609246 CTTAGACATTGAATGAACTCCGTATG
1 CTTAGACATAGAATGAACTCCGTATG
15609272 C
1 C
15609273 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACATAGAATGAACTCCGTATG
Found at i:15609734 original size:26 final size:26
Alignment explanation
Indices: 15609698--15609753 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
15609688 CTGGTTCGAT
15609698 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
15609724 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15609750 CTTA
1 CTTA
15609754 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15610904 original size:26 final size:26
Alignment explanation
Indices: 15610866--15610918 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15610856 CTGGTTTGAT
* *
15610866 CTTAGACAGGGAATGAACTCGGTATG
1 CTTAGACAGGGAATCAACTCCGTATG
*
15610892 CTTAGACATGGAATCAACTCCGTATG
1 CTTAGACAGGGAATCAACTCCGTATG
15610918 C
1 C
15610919 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATCAACTCCGTATG
Found at i:15610990 original size:184 final size:182
Alignment explanation
Indices: 15610681--15611174 Score: 532
Period size: 184 Copynumber: 2.7 Consensus size: 182
15610671 TGGCTCAAAC
* * *
15610681 TCTTAGACTGGGAATGAACTTCGTAT-CTTTAGAGATGGAATGAACTCCATATACCTAAGCCAAC
1 TCTTAGACAGGGAATGAAC-TCGTATGC-TTAGACATGGAATGAACTCCATATGCCTAAGCCAAC
* ** * *
15610745 CCACGAAACAAGCGTGCGGGCGCTCAGCCGACCGAAGAGGCAGAATGCACAATCCGGGGATCGAC
64 CCACGAAACGAGCGTGCAAGCGCTCAGCCGACCGAAGAGGCAGAATGCACAAGCCGGGGATCAAC
* * * * **
15610810 CCGGTCGC-CCTTACGTGCTGCCAATCCTACTGTCACAACCCTCGGTCTGGTTTGA
129 CCGATC-CTCC-TACGTGCTGCCAATACTACTATCACAACCCTCGGTCCGGTTCAA
* *
15610865 TCTTAGACAGGGAATGAACTCGGTATGCTTAGACATGGAATCAACTCCGTATGCCTAAGCCAACC
1 TCTTAGACAGGGAATGAACTC-GTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACC
* * ** *
15610930 CATGAAACGAGCGTGCAAGCGCTCAGCCGACCGGAGAGGCAGAATGCGTAAGCTGGGGATCAACC
65 CACGAAACGAGCGTGCAAGCGCTCAGCCGACCGAAGAGGCAGAATGCACAAGCCGGGGATCAACC
* * * * *
15610995 CGATCCTTCCTGCGTGCTGTCGATACTGCTATCGCAACCCTCGGTCCGGTTCAA
130 CGATCC-TCCTACGTGCTGCCAATACTACTATCACAACCCTCGGTCCGGTTCAA
* *
15611049 TCTTAGACTA-GGAATGAACTCCGTATGCTTAGAC-TGGGGATGAACTCCATATGCCTAAGTCAA
1 TCTTAGAC-AGGGAATGAACT-CGTATGCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAA
* * * * * * *
15611112 CCCACGAAATGAGCGTAC-GGACGCTCAACCGA-CTAGAGAGGCAGGATGCACAAGTCGGGGATC
63 CCCACGAAACGAGCGTGCAAG-CGCTCAGCCGACCGA-AGAGGCAGAATGCACAAGCCGGGGATC
15611175 GAACGAGTGG
Statistics
Matches: 259, Mismatches: 42, Indels: 18
0.81 0.13 0.06
Matches are distributed among these distances:
183 6 0.02
184 248 0.96
185 5 0.02
ACGTcount: A:0.27, C:0.27, G:0.26, T:0.20
Consensus pattern (182 bp):
TCTTAGACAGGGAATGAACTCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCC
ACGAAACGAGCGTGCAAGCGCTCAGCCGACCGAAGAGGCAGAATGCACAAGCCGGGGATCAACCC
GATCCTCCTACGTGCTGCCAATACTACTATCACAACCCTCGGTCCGGTTCAA
Found at i:15611079 original size:26 final size:26
Alignment explanation
Indices: 15611050--15611102 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15611040 CCGGTTCAAT
*
15611050 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
15611076 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
15611102 C
1 C
15611103 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:15612483 original size:158 final size:157
Alignment explanation
Indices: 15612004--15612488 Score: 487
Period size: 158 Copynumber: 3.1 Consensus size: 157
15611994 GCTTACACAT
* * *
15612004 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCAACCGACCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGACCGAAG
** * * * * *
15612069 AGGCAGAATTTGCAAGCCGAGGATTGGCCCAGTCCCTCCTATGT-CTTGTCGATCCTGCTGCCAC
66 AGGCAGAATGAGCAAG-CTAGGGTTGGCCCGGTCCCCCCTACGTGC-TGTCGATCCTGCTGCCAC
* *
15612133 AACCCTCGGTCTGGTCTGATCTTAGACTG
129 AACCCTCGGTCTGGACGGATCTTAGACTG
* * * * * *
15612162 AGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAACGTACGGGAGCTGAGCCGACCGAAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGACCGAAG
* * * * *
15612227 AGGCATAATGAGCAAG-TCAGGGATTGGCCCGGTCCCCCTCTACGTGCTGCCGGTCCCGATGCCA
66 AGGCAGAATGAGCAAGCT-AGGG-TTGGCCCGGTCCCCC-CTACGTGCTGTCGATCCTGCTGCCA
** **
15612291 CAACCCTCAATCT-GACTGGGGCTTAGACAT-
128 CAACCCTCGGTCTGGAC-GGATCTTAGAC-TG
* * * * * * *
15612321 -GAATGAACTCCCTATACCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTTAG-CAAGCTGAA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGA-CCGAA
* * * * **
15612384 GAGGCAGAATGCGCAAGCTAGGGTTCGACCCGGTCCCCCCTACGTGCTATCGATCTTGCTGCCGT
65 GAGGCAGAATGAGCAAGCTAGGGTT-GGCCCGGTCCCCCCTACGTGCTGTCGATCCTGCTGCCAC
15612449 AACCCTCGGTCTGGACGGATCTTAGACTG
129 AACCCTCGGTCTGGACGGATCTTAGACTG
15612478 GGAATGAACTC
1 GGAATGAACTC
15612489 TATATGCTTA
Statistics
Matches: 262, Mismatches: 53, Indels: 24
0.77 0.16 0.07
Matches are distributed among these distances:
156 1 0.00
157 44 0.17
158 177 0.68
159 38 0.15
160 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (157 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGACCGAAG
AGGCAGAATGAGCAAGCTAGGGTTGGCCCGGTCCCCCCTACGTGCTGTCGATCCTGCTGCCACAA
CCCTCGGTCTGGACGGATCTTAGACTG
Found at i:15613217 original size:26 final size:26
Alignment explanation
Indices: 15613178--15613230 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15613168 GGCTCAAAAT
*
15613178 CTTAGACTGAGAATGAATTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
15613204 CTTAGACATG-GAATGAACTCCGTATG
1 CTTAGAC-TGAGAATGAACTCCGTATG
15613230 C
1 C
15613231 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:15613557 original size:157 final size:155
Alignment explanation
Indices: 15613203--15613696 Score: 528
Period size: 157 Copynumber: 3.1 Consensus size: 155
15613193 AATTCCGTAT
*
15613203 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAG
* * * **
15613268 CCAATCGGAGAGGCATAATGCCAAAGCCGAGGATCGGCCTGGTCCCTCCCTGTGTGCTGTCGATC
66 CCGACCGGAGAGGCATAATGCC-AAGCCG-GGATCGGCCCGG-CCC-CCCTACGTGCTGTCGATC
* * **
15613333 CTGCTATCACAACCCTTGGTCTGGTCTGA
127 CTGCTGTCACAACCCTCGGTCCAGTCTGA
* * * * * * *
15613362 TCTTAGAC-TGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAACGAGCATGCGGGAGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCA
* * * * *
15613426 GCCGGCCGAAGAGGCATAATGCACAAGCCAGGGATCGGCCCGAG-CCCCCTCCGTGCTGCCGGTC
65 GCCGACCGGAGAGGCATAATGC-CAAGCC-GGGATCGGCCCG-GCCCCCCTACGTGCTGTCGATC
* *
15613490 CTGCTGCCACAACCCTCGGTCCAGT-TGGG
127 CTGCTGTCACAACCCTCGGTCCAGTCT-GA
* *
15613519 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGAGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAG
* * * * *
15613584 CCGACCGGAGAGGCAGAATGCGCAAATCGGGGATCAGTCCGGTCCCCCCTACGTGCTGTCGATCC
66 CCGACCGGAGAGGCATAATGC-C-AAGCCGGGATCGGCCCGG-CCCCCCTACGTGCTGTCGATCC
* * *
15613649 TGCCGTCGCAACCCTCGGTCCAGTCAGA
128 TGCTGTCACAACCCTCGGTCCAGTCTGA
*
15613677 TCTTAGAC-TGAGAATGAACT
1 GCTTAGACATG-GAATGAACT
15613697 TTGTATGGTT
Statistics
Matches: 275, Mismatches: 49, Indels: 23
0.79 0.14 0.07
Matches are distributed among these distances:
156 2 0.01
157 120 0.44
158 63 0.23
159 87 0.32
160 3 0.01
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (155 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGAGCTCAG
CCGACCGGAGAGGCATAATGCCAAGCCGGGATCGGCCCGGCCCCCCTACGTGCTGTCGATCCTGC
TGTCACAACCCTCGGTCCAGTCTGA
Found at i:15620149 original size:26 final size:26
Alignment explanation
Indices: 15620111--15620163 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15620101 GGCTCAAAAT
15620111 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15620137 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
15620163 C
1 C
15620164 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:15620439 original size:159 final size:157
Alignment explanation
Indices: 15620137--15620639 Score: 519
Period size: 159 Copynumber: 3.2 Consensus size: 157
15620127 ACTCCGTATG
* * * *
15620137 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGTGTGCGGGCGCTCAA
1 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGCCAACCCATGAAACGAGTGTACGGGCGCTCAG
* * ** * * *
15620201 CCGACCGGAAAGGCAGAATGCGCAAGCCAGGGATTGGCCC-GATCCCCCCCTATGTTCTATTGAT
65 CCGACCGGAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCAG-TCCCCCTTTA-GTGCTGTCGAT
* *
15620265 CTTGCTGCCGTAACCCTCAGTCCAGTCTGAT
128 CTTGCTGCCGCAACCCTCGGTCC-GTCTGAT
* * * * * *
15620296 CTTAAACTGGGAATGAACTCTGTATGCATAAGTCAACCCATGAAACGAGCGTACGGGCGTTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCATAAGCCAACCCATGAAACGAGTGTACGGGCGCTCAGC
* * * * * *
15620361 CGACCGAAAATGCATAATGCGCAAGCTGGGGATCGGCCCAGTCCCCCTTTACGTGCTGTCGGTCC
66 CGACCGGAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCTTTA-GTGCTGTCGATCT
* * * **
15620426 CGCTGCCACAACCCTCGGTCCGGCTGGGG
130 TGCTGCCGCAACCCTCGGTCCGTCT-GAT
* * * * *
15620455 CTTAGACAT-GGAATGAACTCCCTATGCTTAAGCCAAACCACGAAACGGGTGTACGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGCCAACCCATGAAACGAGTGTACGGGCGCTCAG
* * * *
15620519 CCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCAGTCCCCCTTGT-GTGCTGTCGATC
65 CCGACCGGAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCTT-TAGTGCTGTCGATC
* *
15620583 TTGCTACCGCAACCCTCGGTCCGATTTGAT
129 TTGCTGCCGCAACCCTCGGTCCG-TCTGAT
*
15620613 CTTAGACTGGGAATGAAATCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
15620640 TTATACTGGT
Statistics
Matches: 276, Mismatches: 61, Indels: 15
0.78 0.17 0.04
Matches are distributed among these distances:
157 1 0.00
158 58 0.21
159 214 0.78
160 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCGTATGCATAAGCCAACCCATGAAACGAGTGTACGGGCGCTCAGC
CGACCGGAAAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCCCTTTAGTGCTGTCGATCTT
GCTGCCGCAACCCTCGGTCCGTCTGAT
Found at i:15620642 original size:26 final size:26
Alignment explanation
Indices: 15620613--15620665 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
15620603 CCGATTTGAT
*
15620613 CTTAGACTGG-GAATGAAATCCGTATG
1 CTTAGACTGGTG-ACGAAATCCGTATG
* *
15620639 CTTATACTGGTGACGAACTCCGTATG
1 CTTAGACTGGTGACGAAATCCGTATG
15620665 C
1 C
15620666 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGTGACGAAATCCGTATG
Found at i:15621079 original size:159 final size:159
Alignment explanation
Indices: 15620790--15621089 Score: 440
Period size: 159 Copynumber: 1.9 Consensus size: 159
15620780 CCGTTGTCGG
* * ** * *
15620790 TCCTGCTACCACAACCCTTGGTCCGACTGGGTCTTAATGGTGGAATGAACTCTGTATGCCTAAGC
1 TCCTGCTACCACAACCCTCGGTCCGACTGGGGCTTAATCATGGAATGAACTCCGCATGCCTAAGC
* * * *
15620855 CAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGCCGGAGAGGCATAATGCTCAAGCCGAGGAT
66 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGAT
15620920 CAGCCCGATCCCCCTCTACGAGCTGCTGA
131 CAGCCCGATCCCCCTCTACGAGCTGCTGA
* * *
15620949 TCCTGCTGCCACAGCCCTCGGTCCGGCTGGGGCTTAGA-CATGGAATGAACTCCGCATGCCTAAG
1 TCCTGCTACCACAACCCTCGGTCCGACTGGGGCTTA-ATCATGGAATGAACTCCGCATGCCTAAG
* * *
15621013 CCAACCCACGAAACGAGCGTGTGGGCGTTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGA
65 CCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGA
15621078 TCAGCCCGATCC
130 TCAGCCCGATCC
15621090 ACCCCTGCTT
Statistics
Matches: 124, Mismatches: 16, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
159 123 0.99
160 1 0.01
ACGTcount: A:0.22, C:0.32, G:0.29, T:0.17
Consensus pattern (159 bp):
TCCTGCTACCACAACCCTCGGTCCGACTGGGGCTTAATCATGGAATGAACTCCGCATGCCTAAGC
CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCGAGGAT
CAGCCCGATCCCCCTCTACGAGCTGCTGA
Found at i:15621184 original size:26 final size:26
Alignment explanation
Indices: 15621146--15621198 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15621136 CCGATCTAGT
*
15621146 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
15621172 CTTAGACAT-GGAATAAACTCCGTATG
1 CTTAGAC-TGGGAATAAACTCCGTATG
15621198 C
1 C
15621199 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:15621286 original size:57 final size:57
Alignment explanation
Indices: 15621175--15621286 Score: 170
Period size: 57 Copynumber: 2.0 Consensus size: 57
15621165 CCGTATGCTT
* *
15621175 AGACATGGAATAAACTCCGTATGCCTAAGCCAACCAACAAAATGAACGTGCGGGCTG
1 AGACATGGAATAAACTCCGTATGCCTAAGCCAACCAACAAAATGAACCTACGGGCTG
* * * *
15621232 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAATGAGCCTACGGGC
1 AGACATGGAATAAACTCCGTATGCCTAAGCCAACCAACAAAATGAACCTACGGGC
15621287 GCTCAGCCGG
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
57 49 1.00
ACGTcount: A:0.36, C:0.26, G:0.22, T:0.16
Consensus pattern (57 bp):
AGACATGGAATAAACTCCGTATGCCTAAGCCAACCAACAAAATGAACCTACGGGCTG
Found at i:15621430 original size:26 final size:26
Alignment explanation
Indices: 15621400--15621452 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15621390 TCAATCCGTT
15621400 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
15621426 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
15621452 C
1 C
15621453 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:15621481 original size:254 final size:248
Alignment explanation
Indices: 15620978--15621483 Score: 663
Period size: 248 Copynumber: 2.0 Consensus size: 248
15620968 GGTCCGGCTG
* * * ** *
15620978 GGGCTTAGACATGGAATGAACTCCGCATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGTTC
1 GGGCTGAGACATGGAATGAACTCCGCATGCCTAAGCCAACCCACAAAACGAGCCTACGGGCGCTC
* * * **
15621043 AGCCGGCCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCCACCCCTGCTTACTGCCTG
66 AGCCGGCCGGAAAGGCAGAATACGCAAGCAGAAGATCAGCCCGATCCACCCCTGCTTACTGCCTG
* *
15621108 TTGCTGGTCCTATTGCTGCACCCTCAACCCGATCTAGTCTTAGACTGGGAATGAACTCCGTATGC
131 TTGCTGGTCCTACTGCTGCACCCTCAACCCAATCTAGTCTTAGACTGGGAATGAACTCCGTATGC
15621173 TTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCAACAAAATGAACGTGC
196 TTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCAACAAAATGAACGTGC
* * *
15621226 GGGCTGAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAATGAGCCTACGGGCGCTC
1 GGGCTGAGACATGGAATGAACTCCGCATGCCTAAGCCAACCCACAAAACGAGCCTACGGGCGCTC
* * * * **
15621291 AGCCGGTCGGAAAGGCAGAATACGTAAGCAGAAGATTAGCCCGGTCCACCCCTGCTTGTTGTCGA
66 AGCCGGCCGGAAAGGCAGAATACGCAAGCAGAAGATCAGCCCGATCCACCCCTGC-T-TACT-G-
** * *
15621356 TCCTGTTGCTGGTCCTACTGCTGCAACCCTCGGCTCAATC-CGTTCTTAGACTGGGAATGAACTC
127 -CCTGTTGCTGGTCCTACTGCTGC-ACCCTCAACCCAATCTAG-TCTTAGACTGGGAATGAACTC
* * ** *
15621420 CGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGC
189 CGTATGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCAACAAAATGAACGTGC
15621480 GGGC
1 GGGC
15621484 GCTCAGCCGG
Statistics
Matches: 220, Mismatches: 31, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
248 102 0.46
249 1 0.00
250 2 0.01
251 1 0.00
253 23 0.10
254 91 0.41
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.20
Consensus pattern (248 bp):
GGGCTGAGACATGGAATGAACTCCGCATGCCTAAGCCAACCCACAAAACGAGCCTACGGGCGCTC
AGCCGGCCGGAAAGGCAGAATACGCAAGCAGAAGATCAGCCCGATCCACCCCTGCTTACTGCCTG
TTGCTGGTCCTACTGCTGCACCCTCAACCCAATCTAGTCTTAGACTGGGAATGAACTCCGTATGC
TTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCAACAAAATGAACGTGC
Found at i:15621781 original size:159 final size:159
Alignment explanation
Indices: 15621425--15622193 Score: 563
Period size: 159 Copynumber: 4.8 Consensus size: 159
15621415 AACTCCGTAT
* *
15621425 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAATCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * *
15621490 CCGGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCAACCCGGTGCCCCCTAT--GTGCTATCGAT
66 CCGGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGAT-CCCCCTCTGCGTGCTGTCGAT
* * * * *
15621553 CCTGCTGCCATAACCCTTGGTCTGATCT-GA
130 CCTGCTACCACAACCCTCGGTC-CAGCTGGA
* * * *
15621583 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGT-CAACCCACGAAACGAGCGTGCAGGCGCTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAA-TCCAACCCATGAAACGAGCGTGCGGGCGCTC
* * * * * * * * *
15621646 AGCTGTCCGAAGAGGCATAATGCGTAAGTCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGCCGG
64 AGCCGGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCTCTGCGTGCTGTCGA
* *
15621711 TCTTGCTACCACAACCCTCGGTCCAGCTGGG
129 TCCTGCTACCACAACCCTCGGTCCAGCTGGA
* * *
15621742 GCTTAGACATGGAATGAACTCCCTATGCCTAATCTAACCCATGAAACGAGCGTGCGGGCGTTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAATCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * *
15621807 TCGGCCGGAA-AGGCAGAATGCGCAAGTCGGGGACCGGCCC-AGTCCCCCCCTCCGTGCTGTCAA
66 CCGGCC-GAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGA-TCCCCCTCTGCGTGCTGTCGA
* * * * * * * **
15621870 TCTTGCTATCTCATCCCTCAGT-CTGATCCAA
129 TCCTGCTACCACAACCCTCGGTCCAGCT-GGA
* * * * * * * *
15621901 TCTTAGAC-TAAGAATGAACTTCGTATGCCCAAGT-TAACCCATGAAACAAGCATGCGGGGGCAC
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAA-TCCAACCCATGAAACGAGCGTGC--GGGCGC
* * * *
15621964 TGAGCCGACTGAAGAGGCATAATGCGCAAGCCAGGGATCGACCCGATCCCCCTCTGCGTGCTGTC
62 TCAGCCGGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCTCTGCGTGCTGTC
** * * * * * * * *
15622029 GATCCCACTGCTACAACCCTTGATTCGGTTGGG
127 GATCCTGCTACCACAACCCTCGGTCCAGCTGGA
* * * * * * * * * *
15622062 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGGGTACGGGTGTTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAATCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * * *
15622127 TCGACTGGAGAGGCAGAATGCGCAAGCTAGGG-CCTGACTCGGTCCCCC-CTGCGTGCTATCGAT
66 CCGGCCGAAGAGGCAGAATGCGCAAGCCAGGGATC-GACCCGATCCCCCTCTGCGTGCTGTCGAT
15622190 CCTG
130 CCTG
15622194 TTGCCTTAAA
Statistics
Matches: 472, Mismatches: 119, Indels: 40
0.75 0.19 0.06
Matches are distributed among these distances:
157 8 0.02
158 116 0.25
159 233 0.49
160 8 0.02
161 102 0.22
162 5 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAATCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CCGGCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCTCTGCGTGCTGTCGATC
CTGCTACCACAACCCTCGGTCCAGCTGGA
Found at i:15622075 original size:320 final size:316
Alignment explanation
Indices: 15621425--15622247 Score: 862
Period size: 320 Copynumber: 2.6 Consensus size: 316
15621415 AACTCCGTAT
* *
15621425 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGTTCAG
* * * * * *
15621490 CCGGCC-GAAGAGGCAGAATGCGCAAGCCAGGGATCAACCCGGTGCCCCCTATGTGCTATCGATC
66 TCGGCCGGAA-AGGCAGAATGCGCAAGCCAGGGACCAACCCAGTCCCCCCTACGTGCTATCAATC
** ** ** *
15621554 CTGCTGCCATAACCCTTGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
130 CTGCTGCCAT-ACCCTCAGTCTGATCCAATCTTAGACTAAGAATGAACTCCGTATGCCCAAGTCA
* * * * * * * *
15621619 ACCCACGAAACGAGCGTGCAGGCGCTGAGCTGTCCGAAGAGGCATAATGCGTAAGTCGGGGATCG
194 ACCCACGAAACAAGCATGCAGGCACTGAGCCGACCGAAGAGGCATAATGCGCAAGCCAGGGATCG
* * *** *
15621684 GCCCGATCCCCCTCTGCGTGCTGCCGGTCTTGCTACCACAACCCTCGGTCCAGCTGGG
259 ACCCGATCCCCCTCTGCGTGCTGCCGATCCCACTACCACAACCCTCGATCCAGCTGGG
* * *
15621742 GCTTAGACATGGAATGAACTCCCTATGCCTAATCTAACCCATGAAACGAGCGTGCGGGCGTTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGTTCAG
* * ** * *
15621807 TCGGCCGGAAAGGCAGAATGCGCAAGTCGGGGACCGGCCCAGTCCCCCCCTCCGTGCTGTCAATC
66 TCGGCCGGAAAGGCAGAATGCGCAAGCCAGGGACCAACCCAGT-CCCCCCTACGTGCTATCAATC
* * * *
15621872 TTGCTATCTCAT-CCCTCAGTCTGATCCAATCTTAGACTAAGAATGAACTTCGTATGCCCAAGTT
130 CTGCT-GC-CATACCCTCAGTCTGATCCAATCTTAGACTAAGAATGAACTCCGTATGCCCAAGTC
* * *
15621936 AACCCATGAAACAAGCATGCGGGGGCACTGAGCCGACTGAAGAGGCATAATGCGCAAGCCAGGGA
193 AACCCACGAAACAAGCATGC--AGGCACTGAGCCGACCGAAGAGGCATAATGCGCAAGCCAGGGA
* * * * * * *
15622001 TCGACCCGATCCCCCTCTGCGTGCTGTCGATCCCACTGCTACAACCCTTGATTCGGTTGGG
256 TCGACCCGATCCCCCTCTGCGTGCTGCCGATCCCACTACCACAACCCTCGATCCAGCTGGG
* * * * * *
15622062 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGGGTACGGGTGTTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGTTCAG
* * * * * * * * *
15622127 TCGACTGGAGAGGCAGAATGCGCAAGCTAGGG-CCTGACTCGGTCCCCCCTGCGTGCTATCGATC
66 TCGGCCGGAAAGGCAGAATGCGCAAGCCAGGGACC-AACCCAGTCCCCCCTACGTGCTATCAATC
* * * * ** *
15622191 CTGTTGCCTTAAACCTC-GATCTGATTCAATCTTAGACTGGGAATGAACTCTGTATGC
130 CTGCTGCCAT-ACCCTCAG-TCTGATCCAATCTTAGACTAAGAATGAACTCCGTATGC
15622248 TATGACTGGG
Statistics
Matches: 413, Mismatches: 83, Indels: 18
0.80 0.16 0.04
Matches are distributed among these distances:
317 94 0.23
318 85 0.21
319 61 0.15
320 173 0.42
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.21
Consensus pattern (316 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGTTCAG
TCGGCCGGAAAGGCAGAATGCGCAAGCCAGGGACCAACCCAGTCCCCCCTACGTGCTATCAATCC
TGCTGCCATACCCTCAGTCTGATCCAATCTTAGACTAAGAATGAACTCCGTATGCCCAAGTCAAC
CCACGAAACAAGCATGCAGGCACTGAGCCGACCGAAGAGGCATAATGCGCAAGCCAGGGATCGAC
CCGATCCCCCTCTGCGTGCTGCCGATCCCACTACCACAACCCTCGATCCAGCTGGG
Found at i:15623460 original size:26 final size:26
Alignment explanation
Indices: 15623424--15623479 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
15623414 CCAGTCTGAT
15623424 CTTAGACT-GGGATTGAACTCCGTATG
1 CTTAGACTGGGGA-TGAACTCCGTATG
15623450 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
15623476 CTTA
1 CTTA
15623480 AGTTAACCGA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 25 0.86
27 4 0.14
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:15623833 original size:26 final size:26
Alignment explanation
Indices: 15623796--15623846 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15623786 TCTGATCTTA
15623796 GACTGGGAATGAACTCCATATGCTTT
1 GACTGGGAATGAACTCCATATGCTTT
* *
15623822 GACTGGGGATGAACTCCGTATGCTT
1 GACTGGGAATGAACTCCATATGCTT
15623847 AAGTCAACCC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (26 bp):
GACTGGGAATGAACTCCATATGCTTT
Found at i:15624059 original size:357 final size:358
Alignment explanation
Indices: 15623227--15624111 Score: 1023
Period size: 357 Copynumber: 2.4 Consensus size: 358
15623217 CTCTACGTGT
* * ** * * *
15623227 TACCGGTCCCGCTGCCACAATGCTCGGTCCGACTGGGGCTTAGACATGGAATGAACCCCCTATAC
1 TACCGGTCCTGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGC
* * * *** *
15623292 CTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAAATG-GCTGGAGAGGCAGAATGTGCAAGC
66 CTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGATC-GGAGAGGCAGAATGTGCAAGC
* * * *
15623356 CAGGGATCGGATCGGATCCCCC-TACGTGCTGTCCGATCTTGCTGCCGCAACCCTCGGTCCAGTC
130 CGGGGATC-GACCGG-TCCCCCTTACGTGCTGTCCGATCCTGCTACCGCAACCCTCGGTCCAGTC
* * *
15623420 TGATCTTAGACTGGGATTGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCTTAAGTTA
193 TGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCTTAAGTCA
* * *
15623485 ACCGACGAAACGAGCGTACGGGTCATCAACCGGTTGGAGAGGCTGATCGGAGAGGCATAATGCAC
258 ACCCACGAAACGAACGTACGGCTCATCAACC---------GGC-GATCGGAGAGGCATAATGCAC
* * * * *
15623550 AAGTCAGGGATCAACCTGGTCCCCCTCTACGTACTGTCGATCCCGC
313 AAGCCAGGCATCAACCTGATCCCCCTCTACGTACTGCCAATCCCGC
* *
15623596 TACCGGTCCTGCTGCCACAACCCTCGGTCCGACTGGGGTTTAGACATGGAATGAACTCCGTATGC
1 TACCGGTCCTGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGC
* * *
15623661 CTAAGCCAACCCATGAAATGAGCGTACGGGCGCTCAGCCGATCAGAGAGGCAGAATGTGCAAGCC
66 CTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGTGCAAGCC
* *
15623726 GGGGATCGACCCGGTCCCCCTTACGTGCTGT-CGATCCTGCTACCGTAACCCTTGGTCC-GATCT
131 GGGGATCGA-CCGGTCCCCCTTACGTGCTGTCCGATCCTGCTACCGCAACCCTCGGTCCAG-TCT
*
15623789 GATCTTAGACTGGGAATGAACTCCATATGCTTTGACTGGGGATGAACTCCGTATGCTTAAGTCAA
194 GATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCTTAAGTCAA
* * * *
15623854 CCCACGACATGAACGTGCGGCTGC-TCAACC-G-G-TCGGAGAGGCATAATGCATAAGCCAGGCA
259 CCCACGAAACGAACGTACGGCT-CATCAACCGGCGATCGGAGAGGCATAATGCACAAGCCAGGCA
* * * *
15623915 TCAGCCTGATCCCCCCCTCTACGTGCTGCCAATCTCGT
323 TCAACCTGAT--CCCCCTCTACGTACTGCCAATCCCGC
** * * *
15623953 TGTCGGTCTTGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTTCGTATGC
1 TACCGGTCCTGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGC
* * * *
15624018 CAAAGCCAACCCATGAAACGAGCGTGTGGGCGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGTC
66 CTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGTGCAAGCC
* *
15624083 GAGGATCGGTCCGGT-CCCCTCTACGTGCT
131 GGGGATC-GACCGGTCCCCCT-TACGTGCT
15624112 ACCGATCTTG
Statistics
Matches: 448, Mismatches: 59, Indels: 30
0.83 0.11 0.06
Matches are distributed among these distances:
355 34 0.08
356 6 0.01
357 156 0.35
358 2 0.00
367 1 0.00
368 117 0.26
369 131 0.29
370 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.21
Consensus pattern (358 bp):
TACCGGTCCTGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGC
CTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAGAATGTGCAAGCC
GGGGATCGACCGGTCCCCCTTACGTGCTGTCCGATCCTGCTACCGCAACCCTCGGTCCAGTCTGA
TCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCTTAAGTCAACC
CACGAAACGAACGTACGGCTCATCAACCGGCGATCGGAGAGGCATAATGCACAAGCCAGGCATCA
ACCTGATCCCCCTCTACGTACTGCCAATCCCGC
Found at i:15625411 original size:26 final size:26
Alignment explanation
Indices: 15625373--15625425 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15625363 GGCTCAAAAT
15625373 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15625399 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
15625425 C
1 C
15625426 CTAAGCAACC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15625889 original size:26 final size:26
Alignment explanation
Indices: 15625853--15625905 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15625843 CTGGTTCGAT
15625853 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
15625879 CTTAGACTGGGGATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
15625905 C
1 C
15625906 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:15632766 original size:159 final size:159
Alignment explanation
Indices: 15632477--15632767 Score: 390
Period size: 159 Copynumber: 1.8 Consensus size: 159
15632467 TTGGCTCAAA
* * * *
15632477 ATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAAGAAGCGTGCGGGTGCTCA
1 ATCTTAGACTGGGAATGAACTTCGTATGCATAAGCCAACCCACGAAAGAAGCGTACGGGCGCTCA
* * * *
15632542 GCCGACCGCAGAGGCAGAATGTGCAAGCCAGGGATCGACCCGATTCCCCCCTACGTGATGTCGAT
66 GCCGACCGAAGAGGCAAAATGCGCAAGCCAGGGATCGACCCGATTCCCCCCTACGTGATGCCGAT
15632607 CCTGCTACTGCAACCCTCGGTCTGGTTTG
131 CCTGCTACTGCAACCCTCGGTCTGGTTTG
** *
15632636 ATCTTAGACTGGGAATGAAC-TCTGTATGCATAAGTTAACCCACGAAACG-AGTGTACGGGCGCT
1 ATCTTAGACTGGGAATGAACTTC-GTATGCATAAGCCAACCCACGAAA-GAAGCGTACGGGCGCT
* * * * *
15632699 GAGCCGGCCGAAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGA-TCCCCCTCTGCGTGCTGCC
64 CAGCCGACCGAAGAGGCAAAATGCGCAAGCCAGGGATCGACCCGATTCCCCC-CTACGTGATGCC
15632763 GATCC
128 GATCC
15632768 CACTGCCACA
Statistics
Matches: 113, Mismatches: 16, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
158 8 0.07
159 104 0.92
160 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (159 bp):
ATCTTAGACTGGGAATGAACTTCGTATGCATAAGCCAACCCACGAAAGAAGCGTACGGGCGCTCA
GCCGACCGAAGAGGCAAAATGCGCAAGCCAGGGATCGACCCGATTCCCCCCTACGTGATGCCGAT
CCTGCTACTGCAACCCTCGGTCTGGTTTG
Found at i:15632780 original size:159 final size:159
Alignment explanation
Indices: 15632477--15632836 Score: 386
Period size: 159 Copynumber: 2.3 Consensus size: 159
15632467 TTGGCTCAAA
* * * *
15632477 ATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAAGAAGCGTGCGGGTGCTCA
1 ATCTTAGACTGGGAATGAACTTCGTATGCATAAGCCAACCCACGAAAGAAGCGTACGGGCGCTCA
* * * *
15632542 GCCGACCGCAGAGGCAGAATGTGCAAGCCAGGGATCGACCCGATTCCCCCCTACGTGATGTCGAT
66 GCCGACCGAAGAGGCAAAATGCGCAAGCCAGGGATCGACCCGATTCCCCCCTACGTGATGCCGAT
** **
15632607 CCTGCTACTGCAACCCTCGGTCTGGTTTG
131 CCCACTACCACAACCCTCGGTCTGGTTTG
** *
15632636 ATCTTAGACTGGGAATGAAC-TCTGTATGCATAAGTTAACCCACGAAACG-AGTGTACGGGCGCT
1 ATCTTAGACTGGGAATGAACTTC-GTATGCATAAGCCAACCCACGAAA-GAAGCGTACGGGCGCT
* * * * *
15632699 GAGCCGGCCGAAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGA-TCCCCCTCTGCGTGCTGCC
64 CAGCCGACCGAAGAGGCAAAATGCGCAAGCCAGGGATCGACCCGATTCCCCC-CTACGTGATGCC
* * * *
15632763 GATCCCACTGCCACAACCCTTGGTCTGGCTGG
128 GATCCCACTACCACAACCCTCGGTCTGGTTTG
** * * * *
15632795 GGCTTAGACAT-GGAATAAACTCCCTATGCCTAAGCCAACCCA
1 ATCTTAGAC-TGGGAATGAACTTCGTATGCATAAGCCAACCCA
15632837 TACAACAGGC
Statistics
Matches: 164, Mismatches: 32, Indels: 10
0.80 0.16 0.05
Matches are distributed among these distances:
158 8 0.05
159 153 0.93
160 3 0.02
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (159 bp):
ATCTTAGACTGGGAATGAACTTCGTATGCATAAGCCAACCCACGAAAGAAGCGTACGGGCGCTCA
GCCGACCGAAGAGGCAAAATGCGCAAGCCAGGGATCGACCCGATTCCCCCCTACGTGATGCCGAT
CCCACTACCACAACCCTCGGTCTGGTTTG
Found at i:15632985 original size:26 final size:26
Alignment explanation
Indices: 15632949--15633007 Score: 95
Period size: 26 Copynumber: 2.3 Consensus size: 26
15632939 CTCAGTCCAG
15632949 TCCG-ATG-TTAGACTGGGAATGAAC
1 TCCGTATGCTTAGACTGGGAATGAAC
*
15632973 TCCGTATGCTTAGACTGGGGATGAAC
1 TCCGTATGCTTAGACTGGGAATGAAC
15632999 TCCGTATGC
1 TCCGTATGC
15633008 CTAAGTCAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
24 4 0.12
25 3 0.09
26 25 0.78
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (26 bp):
TCCGTATGCTTAGACTGGGAATGAAC
Found at i:15633374 original size:26 final size:26
Alignment explanation
Indices: 15633336--15633388 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
15633326 CTGGTTTGAT
15633336 CTTAGACTAGGAATGAA-TTCCGTATG
1 CTTAGACTAGGAATGAACTT-CGTATG
15633362 CTTAGAC-ATGGAATGAACTTCGTATG
1 CTTAGACTA-GGAATGAACTTCGTATG
15633388 C
1 C
15633389 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 22 0.88
27 2 0.08
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCGTATG
Found at i:15633470 original size:368 final size:343
Alignment explanation
Indices: 15632638--15633474 Score: 763
Period size: 368 Copynumber: 2.3 Consensus size: 343
15632628 CTGGTTTGAT
* * * *
15632638 CTTAGACTGGGAATGAAC-TCTGTATGCATAAGTTAACCCACGAAACGAGTGTACGGGCGCTGAG
1 CTTAGACTGGGAATGAACTTC-GTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * *
15632702 CCGGCCGAAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGCGTGCTGCCGATC
65 CCGGTCGAAGAGGCAAAATGCGCAAGTCGGGGATCGACCCGATCCCCCTCTGCATGCTACCGATC
* *
15632767 CCACTGCCACAACCCTTGGTCTGGCTGGGGCTTAGACATGGAATAAACTCCCTATGCCTAAGCCA
130 CCACTGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATAAACTCCCTATGCCTAAGCCA
* * * * *
15632832 ACCCATACAACAGGCGTGCAGGCGGTCAACCGGCCGGAGAGGCAGAATAATCAAGTCGGGGATCA
195 ACCCAGACAACAGGCGTGCAGGCGCTCAACCGACCGAAGAGGCAGAATAATCAAGCCGGGGATCA
* * *
15632897 GCCCGGTCCCCCCTACGTGCTACTGATCTTGCTGCCTCAACCCTCAGTCCAGTCCGATGTTAGAC
260 GCCCAGTCCCCCCTACGTGCTACTGATCTTGCTGCCTCAACCCTCAGGCCAGTCCGATCTTAGAC
*
15632962 TGGGAATGAACTCCGTATG
325 TAGGAATGAACTCCGTATG
* * * * *
15632981 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAATCCACGAAACAAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCA--
* * * *
15633046 CGACCGGAGAGGCCTACCGGAGAGGCATAATGCGTAAGTCGAGGATC-AGCCCGATCCCCCTCTG
64 -G-CC-----GG--T--CGAAGAGGCAAAATGCGCAAGTCGGGGATCGA-CCCGATCCCCCTCTG
15633110 CATGCTACCGATATCACTACTGATCCTGCTACCACAACCCTCGGTCTGACTGGGGCTTAGACATG
117 CATGCTACCG--ATC-C--C--A--CTG---CCACAACCCTCGGTCTGACTGGGGCTTAGACATG
* * * *
15633175 GAATGAACTCCGTATGCCTAAGCCAACCCACGA-AAC-GAGCGTGCGGGCGCTTAACCGACCGAA
170 GAATAAACTCCCTATGCCTAAGCCAACCCA-GACAACAG-GCGTGCAGGCGCTCAACCGACCGAA
* ** * ** *
15633238 GAGTCAGAATGCGT-AAGCCGGGGATTAGCCCAGTCCCCCCCTGTGTGCT-GTCGATCCTACTGC
233 GAGGCAGAAT-AATCAAGCCGGGGATCAGCCCAGT-CCCCCCTACGTGCTACT-GAT-CT--TGC
* * ** *
15633301 TGGTCCTGCTATCACAACC-CTTGGCCTGGTTTGATCTTAGACTAGGAATGAATTCCGTATG
292 T-G-CCT-C-A--AC--CCTC-AGGCC-AGTCCGATCTTAGACTAGGAATGAACTCCGTATG
* * *
15633362 CTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTCCGGGCACTCAG
1 CTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAG
* *
15633426 CCGGTCGAAGAGGCAGAATGCGCAAGTCGGGGATCGATCCGATCCCCCT
65 CCGGTCGAAGAGGCAAAATGCGCAAGTCGGGGATCGACCCGATCCCCCT
15633475 TACGTGCTGT
Statistics
Matches: 391, Mismatches: 56, Indels: 69
0.76 0.11 0.13
Matches are distributed among these distances:
343 52 0.13
344 1 0.00
346 1 0.00
347 2 0.01
352 2 0.01
355 1 0.00
356 48 0.12
358 3 0.01
359 1 0.00
361 1 0.00
363 1 0.00
365 3 0.01
367 1 0.00
368 147 0.38
369 18 0.05
370 3 0.01
372 6 0.02
373 1 0.00
374 3 0.01
375 1 0.00
376 1 0.00
377 2 0.01
378 3 0.01
379 1 0.00
380 5 0.01
381 82 0.21
382 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (343 bp):
CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
CGGTCGAAGAGGCAAAATGCGCAAGTCGGGGATCGACCCGATCCCCCTCTGCATGCTACCGATCC
CACTGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATAAACTCCCTATGCCTAAGCCAA
CCCAGACAACAGGCGTGCAGGCGCTCAACCGACCGAAGAGGCAGAATAATCAAGCCGGGGATCAG
CCCAGTCCCCCCTACGTGCTACTGATCTTGCTGCCTCAACCCTCAGGCCAGTCCGATCTTAGACT
AGGAATGAACTCCGTATG
Found at i:15633870 original size:26 final size:26
Alignment explanation
Indices: 15633834--15633886 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15633824 CCTGTCTAAT
15633834 CTTAGACT-GGGAGTGAACTCCATATG
1 CTTAGACTGGGGA-TGAACTCCATATG
15633860 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGGATGAACTCCATATG
15633886 C
1 C
15633887 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCATATG
Found at i:15634593 original size:26 final size:26
Alignment explanation
Indices: 15634555--15634607 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15634545 GGCTCAAACT
15634555 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15634581 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15634607 C
1 C
15634608 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15635604 original size:26 final size:26
Alignment explanation
Indices: 15635566--15635617 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15635556 GGCTCAAACT
15635566 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15635592 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15635618 ACTAAGCCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15635948 original size:26 final size:26
Alignment explanation
Indices: 15635907--15635959 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15635897 CCAGTCTGAT
15635907 CTTAGACTAGGAATGAACCCCGTATG
1 CTTAGACTAGGAATGAACCCCGTATG
* * **
15635933 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACCCCGTATG
15635959 C
1 C
15635960 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACCCCGTATG
Found at i:15636224 original size:197 final size:196
Alignment explanation
Indices: 15635889--15636263 Score: 481
Period size: 197 Copynumber: 1.9 Consensus size: 196
15635879 ACTGTCGCAA
* *
15635889 CCCTCGGTCCAGTCTGATCTTAGACTAGGAATGAACCCCGTATGCTTAGACTGGGGATGAACTTC
1 CCCTCGGTCCAGTCTGATCTGAGACTAGGAATGAACCCCGTATGCTTAGACTGGGAATGAACTTC
* ** * * * *
15635954 GTATGCCTAAGTCAACCCACGAAACAAGCGTGCAGGCGCTCAGCCGGCTGGAGAGGCAGAATGTA
66 GTATGCCGAAACCAACCCACAAAACAAGCATGCAGGCGCTCAGCCGACCGGAGAGGCAGAATGTA
* *
15636019 TAAGCCGGGGATCGGCCTAG-TCTCCCCCTGCATACTGTCGATCCTGCTGCTGGTCCTGTTACTG
131 CAAGCCGGGGATCGACC-AGATC-CCCCCTGCATACTGTCGATCCTGCTGCTGGTCCTGTTACTG
15636083 CAG
194 CAG
* *
15636086 CCCTCGGTCCGGTCCT-ATCTGAGACTAGGAATGAACTCCGTATGCTTAGACAT-GGAATGAAC-
1 CCCTCGGTCCAGT-CTGATCTGAGACTAGGAATGAACCCCGTATGCTTAGAC-TGGGAATGAACT
* *
15636148 TCTGTATGCCGAAACCAACCCACAAAACGAGCATGC-GAGCGCTCAGCCGACCGGAGAGGTAGAA
64 TC-GTATGCCGAAACCAACCCACAAAACAAGCATGCAG-GCGCTCAGCCGACCGGAGAGGCAGAA
* * ** *
15636212 TGTGCAAGCCGGGGATCGACCCGATCCCCCCTGTGTGCTGTCGATCCTGCTG
127 TGTACAAGCCGGGGATCGACCAGATCCCCCCTGCATACTGTCGATCCTGCTG
15636264 TCGTAACCCT
Statistics
Matches: 153, Mismatches: 20, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
196 27 0.18
197 123 0.80
198 3 0.02
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (196 bp):
CCCTCGGTCCAGTCTGATCTGAGACTAGGAATGAACCCCGTATGCTTAGACTGGGAATGAACTTC
GTATGCCGAAACCAACCCACAAAACAAGCATGCAGGCGCTCAGCCGACCGGAGAGGCAGAATGTA
CAAGCCGGGGATCGACCAGATCCCCCCTGCATACTGTCGATCCTGCTGCTGGTCCTGTTACTGCA
G
Found at i:15636484 original size:159 final size:158
Alignment explanation
Indices: 15636129--15636575 Score: 452
Period size: 159 Copynumber: 2.8 Consensus size: 158
15636119 AACTCCGTAT
* *
15636129 GCTTAGACATGGAATGAACTCTGTATGCCGAAACCAACCCACAAAACGAGCATGCGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACGAGCATGCGAGCGCTCAG
* ** * **
15636194 CCGACCGGAGAGGTAGAATGTGCAAGCCGGGGATCGACCCGATCCCCCCTGTGTGCTGTCGATCC
66 CCGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTACCGATCC
** * ** *
15636259 TGCTGTCGTAACCCTGGGTCTGGTCTGA
131 CACTGCCACAACCCTCGGTCTGGTCTGA
* * * * *
15636287 TCTTAGAC-TAGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCATTC-AGGCGCTG
1 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACGAGCATGCGA-GCGCTC
* * * * * * *
15636350 AGTCGACCGGAGAGGCATAATGCACAAGTCGGGGATTGGCCTGGTCCCCCTCTGCGTGCTACCTG
64 AGCCGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGATCCCCC-CTGCGTGCTACC-G
*
15636415 -TCCCACTGCCACAACCCTCGGTCTGG-CTGGG
127 ATCCCACTGCCACAACCCTCGGTCTGGTCT-GA
** * * ** * *
15636446 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCCCAAAACGGGTGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACGAGCATGCGAGCGCTCAG
* * * * * *
15636511 CCGACCGAAGAGGCAGAATGCTCAAACCGAGGATCGACTCGATCCCCCCAGCGTGCTACCGATCC
66 CCGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTACCGATCC
15636576 TGCTGTTGCA
Statistics
Matches: 229, Mismatches: 52, Indels: 16
0.77 0.18 0.05
Matches are distributed among these distances:
157 3 0.01
158 108 0.47
159 116 0.51
160 2 0.01
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACGAGCATGCGAGCGCTCAG
CCGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTACCGATCC
CACTGCCACAACCCTCGGTCTGGTCTGA
Found at i:15638227 original size:26 final size:26
Alignment explanation
Indices: 15638198--15638250 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15638188 CCGGTTCGAT
15638198 CTTAGACTGGGAAAGAACTTCGTATG
1 CTTAGACTGGGAAAGAACTTCGTATG
* *
15638224 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAAAGAACTTCGTATG
15638250 C
1 C
15638251 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTTCGTATG
Found at i:15638825 original size:26 final size:27
Alignment explanation
Indices: 15638747--15638819 Score: 107
Period size: 26 Copynumber: 2.8 Consensus size: 27
15638737 CCAATCCGAT
15638747 CTTAGACT-AGGAATGAACTTCAAATG
1 CTTAGACTGAGGAATGAACTTCAAATG
* *
15638773 CTTAGATTG-GGAATGAACTCCAAATG
1 CTTAGACTGAGGAATGAACTTCAAATG
15638799 CTTAGACTGAGG-ATGAACTTC
1 CTTAGACTGAGGAATGAACTTC
15638820 GTATGCCTAA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
26 39 0.95
27 2 0.05
ACGTcount: A:0.34, C:0.16, G:0.22, T:0.27
Consensus pattern (27 bp):
CTTAGACTGAGGAATGAACTTCAAATG
Found at i:15639195 original size:26 final size:26
Alignment explanation
Indices: 15639166--15639218 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15639156 TCGATTCGAT
* *
15639166 CTTAGGCTGGGAATGAATTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
15639192 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15639218 C
1 C
15639219 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15639414 original size:26 final size:26
Alignment explanation
Indices: 15639376--15639428 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15639366 CCGGTCTAAT
*
15639376 CTTAGACAGGGAATGAACTTCGTATG
1 CTTAGACAGGGAATGAACTACGTATG
*
15639402 CTTAGACATGGAATGAACTACGTATG
1 CTTAGACAGGGAATGAACTACGTATG
15639428 C
1 C
15639429 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTACGTATG
Found at i:15639711 original size:159 final size:159
Alignment explanation
Indices: 15639402--15639764 Score: 403
Period size: 159 Copynumber: 2.3 Consensus size: 159
15639392 ACTTCGTATG
* * *
15639402 CTTAGACATGGAATGAACTACGTATGCCTAAGCCAACCCATGAAACAAACGTGCAGCCGCTCAGC
1 CTTAGACATGGAATAAACTACGTATGCCTAAGCCAACCCATGAAACAAACGTGCAGCCACTCAAC
15639467 CAGCCAGAGAGGCAGAATGCGTAAGCTGGAGATCGGCCCGATCCCCCCCTGCGTGCTGTCGATCC
66 CAGCCAGAGAGGCAGAATGCGTAAGCTGGAGATCGGCCCGATCCCCCCCTGCGTGCTGTCGATCC
* * * *
15639532 TGCTACCGCATCCCTTGGTCCAGTCTGAT
131 CGCTACCACAACCCTCGGTCCAGTCTGAT
* * * * *
15639561 CTTAGAC-TGGGAATAAACTTCGTATGCCTAAGTCAACCCATGAAACAAGCGTTCGAG-CACTGA
1 CTTAGACAT-GGAATAAACTACGTATGCCTAAGCCAACCCATGAAACAAACGTGC-AGCCACTCA
* ** * * * *
15639624 ACCGGCTGGAGAGGCATAATGCGTAAG-TCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTC-A
64 ACCAGCCAGAGAGGCAGAATGCGTAAGCT-GGAGATCGGCCCGATCCCCCCCTGCGTGCTGTCGA
* **
15639687 GTCCCGCTGCCACAACCCTCGGTCCAG-CTCGGG
128 -TCCCGCTACCACAACCCTCGGTCCAGTCT-GAT
* * * * *
15639720 CTTAGACATGGAATGAACTCCCTATGCTTAAGCCAACCCGTGAAA
1 CTTAGACATGGAATAAACTACGTATGCCTAAGCCAACCCATGAAA
15639765 TGGGTGTGTG
Statistics
Matches: 170, Mismatches: 28, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
158 5 0.03
159 162 0.95
160 3 0.02
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.20
Consensus pattern (159 bp):
CTTAGACATGGAATAAACTACGTATGCCTAAGCCAACCCATGAAACAAACGTGCAGCCACTCAAC
CAGCCAGAGAGGCAGAATGCGTAAGCTGGAGATCGGCCCGATCCCCCCCTGCGTGCTGTCGATCC
CGCTACCACAACCCTCGGTCCAGTCTGAT
Found at i:15639914 original size:26 final size:26
Alignment explanation
Indices: 15639878--15639930 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15639868 TTGGTCCGAT
**
15639878 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
*
15639904 CTTAGACTGGGGATGAACCCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
15639930 C
1 C
15639931 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCGTATG
Found at i:15640113 original size:26 final size:26
Alignment explanation
Indices: 15640065--15640115 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
15640055 GATCCGATCC
**
15640065 TAGACTGGGAATGAACTTTGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
15640091 TAGACTAGGG-ATGAACTCCGTATGC
1 TAGACT-GGGAATGAACTCCGTATGC
15640116 CTAAGTTAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:15641164 original size:26 final size:26
Alignment explanation
Indices: 15641128--15641180 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15641118 CCAGTCCAAT
*
15641128 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15641154 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15641180 C
1 C
15641181 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15641888 original size:26 final size:26
Alignment explanation
Indices: 15641850--15641902 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15641840 GGCTCAAACT
15641850 CTTAGACTGGGAATGAACTCTGAATG
1 CTTAGACTGGGAATGAACTCTGAATG
*
15641876 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGAATG
15641902 C
1 C
15641903 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGAATG
Found at i:15642429 original size:26 final size:27
Alignment explanation
Indices: 15642389--15642442 Score: 85
Period size: 27 Copynumber: 2.0 Consensus size: 27
15642379 TCGATCTGAT
15642389 CTTAGACTGGAAATG-AACTCCGTATG
1 CTTAGACTGGAAATGAAACTCCGTATG
15642415 CTTAGACATGG-AATGAAACTCCGTATG
1 CTTAGAC-TGGAAATGAAACTCCGTATG
15642442 C
1 C
15642443 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
26 11 0.42
27 15 0.58
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.26
Consensus pattern (27 bp):
CTTAGACTGGAAATGAAACTCCGTATG
Found at i:15642919 original size:26 final size:26
Alignment explanation
Indices: 15642890--15642942 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15642880 CCAGTTCGAT
15642890 CTTAGACTGGGAATAAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
* * *
15642916 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCATATG
15642942 C
1 C
15642943 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:15643327 original size:159 final size:158
Alignment explanation
Indices: 15643039--15643508 Score: 417
Period size: 159 Copynumber: 3.0 Consensus size: 158
15643029 TGGGTTCAAG
* * * * ** * * *
15643039 CCAGACCGAGGGTTGCGACAGTAGGATCAACAGCACGTAGGGGGGACTGGGCCGATCCCTGGCTT
1 CCAGACTGAGGGTTACGACAGCAGGATCGACAGCACACAGGGGGGACAGGGCCGATCCCCGACTT
* * * * * * * * * * * *
15643104 GCACATTCTGCCTCTTCGGCAGGCTGAGCGCCCGCACACCCGTTTCGTGGGTTGGCTTATGCATA
66 GCGCATTATGCCTCTCCGACCGACTCAACG-CCGAACGCTCGTTTCGTGGGTTGGCTTAGGCATA
* *
15643169 GGGAGTTCATTCCATGTCTAAGCCCCAG-
130 CGGAGTTCATTCCATGTCTAAGCACCAGA
** * ** * * *
15643197 CCAGACTGAGGGTTGTGGCAGTGGGA-CAGGCAGCACACAGAGGGGGACCGGGCCTATCCCCGAC
1 CCAGACTGAGGGTTACGACAGCAGGATC-GACAGCACACAG-GGGGGACAGGGCCGATCCCCGAC
* * * *
15643261 TTGCGCATTATGCCTCTCCGGCTGACTCAACGTCCGAACGCTCGTTTTGTGGGTTGACTTAGGCA
64 TTGCGCATTATGCCTCTCCGACCGACTCAACG-CCGAACGCTCGTTTCGTGGGTTGGCTTAGGCA
* * *
15643326 TACGAAGTTCATTCCCA-GTCTAAG-ATCGGA
128 TACGGAGTTCATT-CCATGTCTAAGCACCAGA
* * * *
15643356 CCAGACTGAGGGTTACGATAGCAGGATCGACAGCACACAGGGGGGATAGGGTCGATCCCCGGCTT
1 CCAGACTGAGGGTTACGACAGCAGGATCGACAGCACACAGGGGGGACAGGGCCGATCCCCGACTT
* * ** * * *
15643421 GTGCATTCTGCCTCTCCGACCGGTTGAGCGCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
66 GCGCATTATGCCTCTCCGACCGACTCAACGCCGAACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
*
15643486 GGAGTTCATTTCATGTCTAAGCA
131 GGAGTTCATTCCATGTCTAAGCA
15643509 TATGGAGTTC
Statistics
Matches: 249, Mismatches: 56, Indels: 14
0.78 0.18 0.04
Matches are distributed among these distances:
156 2 0.01
157 49 0.20
158 75 0.30
159 119 0.48
160 4 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.22
Consensus pattern (158 bp):
CCAGACTGAGGGTTACGACAGCAGGATCGACAGCACACAGGGGGGACAGGGCCGATCCCCGACTT
GCGCATTATGCCTCTCCGACCGACTCAACGCCGAACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
GGAGTTCATTCCATGTCTAAGCACCAGA
Found at i:15643529 original size:26 final size:26
Alignment explanation
Indices: 15643480--15643532 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15643470 GTTGGCTTAG
*
15643480 GCATACGGAGTTCATTTCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
15643506 GCATATGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
15643532 G
1 G
15643533 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:15644690 original size:134 final size:135
Alignment explanation
Indices: 15644433--15644683 Score: 351
Period size: 134 Copynumber: 1.9 Consensus size: 135
15644423 ATAGCGGGAC
* * * * *
15644433 CGACAGCACGTAGAGGGGGATCGGGTCGATCCTCGACTTGCGCATTATGCCTCTCTGGCCGGCTC
1 CGACAGCACGTAGAGGGGGATCGGGCCGATCCTCGACTTACGCATTATGCCTCTCCGACCGACTC
** *
15644498 AGCGCTTGAACACTCATTTCATGGGTTGATTTAGGCATATGGAGTTCATTCCCAGTCTATGCAGT
66 AGCGCCCGAACACTCATTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTATGCAGT
15644563 AGGAT
131 AGGAT
* *
15644568 CGACAGCACGTAGA-GGGGATCGGGCCGGTCCTCGACTTACGCATTATGCCTCTCCGACCGACTG
1 CGACAGCACGTAGAGGGGGATCGGGCCGATCCTCGACTTACGCATTATGCCTCTCCGACCGACTC
* * * ** *
15644632 AGTGCCCGCACGCTTGTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCC
66 AGCGCCCGAACACTCATTTCATGGGTTGACTTAGGCATATGGAGTTCATTCC
15644684 ATGTCTAAGC
Statistics
Matches: 100, Mismatches: 16, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
134 86 0.86
135 14 0.14
ACGTcount: A:0.19, C:0.26, G:0.29, T:0.26
Consensus pattern (135 bp):
CGACAGCACGTAGAGGGGGATCGGGCCGATCCTCGACTTACGCATTATGCCTCTCCGACCGACTC
AGCGCCCGAACACTCATTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTATGCAGT
AGGAT
Found at i:15645644 original size:159 final size:159
Alignment explanation
Indices: 15645263--15645988 Score: 577
Period size: 158 Copynumber: 4.6 Consensus size: 159
15645253 GTCGATTCGT
*** * *
15645263 AGCTTGCGCATTATGCCTCTCCGGTCGACTGAGGGCCCGCACGCTTGTTTCATGGGTTGACTTAG
1 AGCTTGCGCATTATGCCTCTCCTACCGACTGAGGGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * * * **
15645328 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAAACCGAAGGTTGCGGCAGCATGATCGGTA
66 GCATACGGAGTTCATTCCCAGTCTAAGACCAAACCAGACTGAAGGTTACGGCAGCAGGACCGACA
* * *
15645393 GCACGCACA-GGGGATCGAGTCGATCCCC
131 GCACGCAGAGGGGGACCGAGCCGATCCCC
* * * * ** * * *
15645421 GGGTTGTGCATTCTGCCTCTCCTACCGACTGAAAGCCCGCACGCCCGTTTGGTGGGTTGGCTTAG
1 AGCTTGCGCATTATGCCTCTCCTACCGACTGAGGGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * *** * ** **
15645486 GTATAGGGAGTTCATT-CCATGTCTAAGCCCCGCCCAGA-TCGAGGGTTGTGGCAGTGGGACCGA
66 GCATACGGAGTTCATTCCCA-GTCTAAGACCAAACCAGACT-GAAGGTTACGGCAGCAGGACCGA
* *
15645549 CAGCACGCAGAGGGGGACCGAGCCAATCTCC
129 CAGCACGCAGAGGGGGACCGAGCCGATCCCC
** * *
15645580 AGCTTGCGCATTATGCCTCTCCTACCGGTTGAGGGCCCGAACGCTCGTTTTGTGGGTTGACTTAG
1 AGCTTGCGCATTATGCCTCTCCTACCGACTGAGGGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * * *
15645645 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAAGGTTACAGTAGCAGGATCGACA
66 GCATACGGAGTTCATTCCCAGTCTAAGACCAAACCAGACTGAAGGTTACGGCAGCAGGACCGACA
* * *
15645710 GCACGCAG-GGGGGATCGAGCTGGTCCCC
131 GCACGCAGAGGGGGACCGAGCCGATCCCC
* * * * * * *
15645738 AGCTTGCGCATTCTGCCTCT-CTAGCTGGCTGAGCGCCCGCACGCTCATTTCGTGAGTTGGCTTA
1 AGCTTGCGCATTATGCCTCTCCTA-CCGACTGAGGGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* * * * * * **
15645802 GGCATAAGGAGTTCATT-CCATGTCTATGCCCCAACC-GAACTGAGGGTTATGGCAGTGGGACCG
65 GGCATACGGAGTTCATTCCCA-GTCTAAGACCAAACCAG-ACTGAAGGTTACGGCAGCAGGACCG
** * *
15645865 GTAGCACGCAGAGGGGGACCGAGCTGATCCTC
128 ACAGCACGCAGAGGGGGACCGAGCCGATCCCC
* * * **** * * * * *
15645897 GGCTTACGCATTATGCCTTTCCGGGTGGCTCAGCGCCCGAACGCTCATTTCGTGGGTTGA-TGTA
1 AGCTTGCGCATTATGCCTCTCCTACCGACTGAGGGCCCGCACGCTCGTTTCGTGGGTTGACT-TA
** *
15645961 GGCATACATAGTTCATTTCCAGTCTAAG
65 GGCATACGGAGTTCATTCCCAGTCTAAG
15645989 CAACAGGATC
Statistics
Matches: 445, Mismatches: 111, Indels: 23
0.77 0.19 0.04
Matches are distributed among these distances:
157 10 0.02
158 221 0.50
159 206 0.46
160 8 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (159 bp):
AGCTTGCGCATTATGCCTCTCCTACCGACTGAGGGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
GCATACGGAGTTCATTCCCAGTCTAAGACCAAACCAGACTGAAGGTTACGGCAGCAGGACCGACA
GCACGCAGAGGGGGACCGAGCCGATCCCC
Found at i:15645815 original size:317 final size:317
Alignment explanation
Indices: 15645263--15645988 Score: 886
Period size: 317 Copynumber: 2.3 Consensus size: 317
15645253 GTCGATTCGT
* * * * *
15645263 AGCTTGCGCATTATGCCTCTCCGGTCGACTGAGGGCCCGCACGCTTGTTTCATGGGTTGACTTAG
1 AGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGGGCCCGAACGCTCGTTTCGTGGGTTGACTTAG
* * * * **
15645328 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAAACCGAAGGTTGCGGCAGCATGATCGGTA
66 GCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAAACCGAAGGTTACAGCAGCAGGATCGACA
* * *
15645393 GCACGCACAGGGGATCGAGTCGATCCCCGGGTTGTGCATTCTGCCTCTCCTACCGACTGAAAGCC
131 GCACGCACAGGGGATCGAGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCTACCGACTGAAAGCC
* * * * * **
15645458 CGCACGCCCGTTTGGTGGGTTGGCTTAGGTATAGGGAGTTCATTCCATGTCTAAGCCCCGCCCAG
196 CGCACGCCCATTTCGTGAGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAACC-G
* *
15645523 ATC-GAGGGTTGTGGCAGTGGGACCGACAGCACGCAGAGGGGGACCGAGCCAAT-CTCC
260 AACTGAGGGTTATGGCAGTGGGACCGACAGCACGCAGAGGGGGACCGAGCCAATCCT-C
** * *
15645580 AGCTTGCGCATTATGCCTCTCCTACCGGTTGAGGGCCCGAACGCTCGTTTTGTGGGTTGACTTAG
1 AGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGGGCCCGAACGCTCGTTTCGTGGGTTGACTTAG
* * * *
15645645 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAAGGTTACAGTAGCAGGATCGACA
66 GCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAAACCGAAGGTTACAGCAGCAGGATCGACA
** * * * **
15645710 GCACGCAGGGGGGATCGAG-CTGGTCCCCAGCTTGCGCATTCTGCCTCT-CTAGCTGGCTGAGCG
131 GCACGCACAGGGGATCGAGTC-GATCCCCAGCTTGCGCATTCTGCCTCTCCTA-CCGACTGAAAG
* *
15645773 CCCGCACGCTCATTTCGTGAGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTATGCCCCAACC
194 CCCGCACGCCCATTTCGTGAGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAACC
** **
15645838 GAACTGAGGGTTATGGCAGTGGGACCGGTAGCACGCAGAGGGGGACCGAGCTGATCCTC
259 GAACTGAGGGTTATGGCAGTGGGACCGACAGCACGCAGAGGGGGACCGAGCCAATCCTC
* * * ** * * *
15645897 GGCTTACGCATTATGCCTTTCCGGGTGGCTCAGCGCCCGAACGCTCATTTCGTGGGTTGA-TGTA
1 AGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGGGCCCGAACGCTCGTTTCGTGGGTTGACT-TA
* *
15645961 GGCATACATAGTTCATTTCCAGTCTAAG
65 GGCATACAGAGTTCATTCCCAGTCTAAG
15645989 CAACAGGATC
Statistics
Matches: 346, Mismatches: 58, Indels: 10
0.84 0.14 0.02
Matches are distributed among these distances:
316 8 0.02
317 336 0.97
318 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (317 bp):
AGCTTGCGCATTATGCCTCTCCGGCCGGCTGAGGGCCCGAACGCTCGTTTCGTGGGTTGACTTAG
GCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAAACCGAAGGTTACAGCAGCAGGATCGACA
GCACGCACAGGGGATCGAGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCTACCGACTGAAAGCC
CGCACGCCCATTTCGTGAGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAACCGA
ACTGAGGGTTATGGCAGTGGGACCGACAGCACGCAGAGGGGGACCGAGCCAATCCTC
Found at i:15646132 original size:26 final size:25
Alignment explanation
Indices: 15646096--15646147 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
15646086 GTTGGCTTAG
*
15646096 GCATATGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCA-GTCTAA
15646122 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
15646147 G
1 G
15646148 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:15646319 original size:26 final size:26
Alignment explanation
Indices: 15646289--15646341 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15646279 GTTGACTTAG
* *
15646289 GCATACAGAGTTCATCCCCAGTTTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
*
15646315 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
15646341 G
1 G
15646342 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:15646475 original size:184 final size:188
Alignment explanation
Indices: 15645986--15646499 Score: 519
Period size: 193 Copynumber: 2.7 Consensus size: 188
15645976 TTTCCAGTCT
* * * * * * *
15645986 AAGCAACAGGATCGATGGCACGCAGGGGGGATCGGGCAGTTACCCGACTTGTGCATTCTGCCTC-
1 AAGCAGCAGGATCGATAGCACGCAGGGGGGACCGGGCCGATCCCCGACTT-TGCGTTCTGCCTCT
* * * *
15646050 TCTGATCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCA
65 TC-GGTCGGCTGAGCGCCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATCCCA
** **
15646115 TGTCTAAGCATACGGAGTTCATTCCAGTCTAAGATCAGACTGGACTGAGGGTTATGGTAGG
129 TGTCTAAGCATACAAAGTTCATTCCAGTCTAAGATCAGACCAGACTGAGGGTTATGG-AGG
** * * * *
15646176 ACTAGCAGCAGGATCGGCAACATGCAAGGGGGATCAGGGCCGATCCCCGAC-TTGCGTATTCTGC
1 A--AGCAGCAGGATCGATAGCACGCAGGGGGGA-CCGGGCCGATCCCCGACTTTGCG--TTCTGC
* * *
15646240 CTTTTCGG-CTGGCTGAGCGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCAT
61 CTCTTCGGTC-GGCTGAGCGCCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
*
15646304 CCCCA-GTTTAAGCATACAAAGTTCATTCCCAGTCTAAGATCAGACCAGA-TCGAGGG-T-T-G-
125 -CCCATGTCTAAGCATACAAAGTTCATT-CCAGTCTAAGATCAGACCAGACT-GAGGGTTATGGA
15646363 GG
187 GG
* * *
15646365 -A-CAGTAGGATCGATAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTATGCGTTATGCCTCT
1 AAGCAGCAGGATCGATAGCACGCAGGGGGGACCGGGCCGATCCCCGACTT-TGCGTTCTGCCTCT
* * * ** * *
15646428 TCGGTCGGCTGAGCGCCCGTACGCCCGTTTTTTGGGTTGGCTTAGGCATAGGGAGTTCATTCCAT
65 TCGGTCGGCTGAGCGCCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATCCCAT
15646493 GTCTAAG
130 GTCTAAG
15646500 TCCCAACCGG
Statistics
Matches: 265, Mismatches: 45, Indels: 34
0.77 0.13 0.10
Matches are distributed among these distances:
183 3 0.01
184 79 0.30
185 24 0.09
186 5 0.02
189 2 0.01
190 1 0.00
191 4 0.02
192 26 0.10
193 92 0.35
194 29 0.11
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (188 bp):
AAGCAGCAGGATCGATAGCACGCAGGGGGGACCGGGCCGATCCCCGACTTTGCGTTCTGCCTCTT
CGGTCGGCTGAGCGCCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATCCCATG
TCTAAGCATACAAAGTTCATTCCAGTCTAAGATCAGACCAGACTGAGGGTTATGGAGG
Found at i:15646624 original size:159 final size:158
Alignment explanation
Indices: 15646354--15646658 Score: 409
Period size: 159 Copynumber: 1.9 Consensus size: 158
15646344 CAGACCAGAT
* * * *
15646354 CGAGGGTTGGGACAGTAGGATCGATAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTATGCGT
1 CGAGGGTTGGGACAGCAGGATCGACAGCACACAGGGGGGACCGGGCCGATCCCCAGCTTATGCGT
* * * * ** *
15646419 TATGCCTCTTCGGTCGGCTGAGCGCCCGTACGCCCGTTTTTTGGGTTGGCTTAGGCATAGGGAGT
66 TATGCCTCTCCGGCCGGCTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
15646484 TCATTCCATGTCTAAGTCCCAACCGGAC
131 TCATTCCATGTCTAAGTCCCAACCGGAC
*
15646512 CGAGGGTTGTGG-CAGCGGGATCGACAGCACACAGAGGGGGACCGGGCCGATCCCCAGC-T-TGC
1 CGAGGGTTG-GGACAGCAGGATCGACAGCACACAG-GGGGGACCGGGCCGATCCCCAGCTTATGC
* * *
15646574 GTATTCTGCCTCTCCGGCCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
64 G--TTATGCCTCTCCGGCCGGCTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACG
*
15646639 GAGTTCGTTCCATGTCTAAG
127 GAGTTCATTCCATGTCTAAG
15646659 CATACAGAGT
Statistics
Matches: 127, Mismatches: 16, Indels: 7
0.85 0.11 0.05
Matches are distributed among these distances:
157 4 0.03
158 28 0.22
159 95 0.75
ACGTcount: A:0.16, C:0.28, G:0.34, T:0.23
Consensus pattern (158 bp):
CGAGGGTTGGGACAGCAGGATCGACAGCACACAGGGGGGACCGGGCCGATCCCCAGCTTATGCGT
TATGCCTCTCCGGCCGGCTGAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
TCATTCCATGTCTAAGTCCCAACCGGAC
Found at i:15646662 original size:26 final size:26
Alignment explanation
Indices: 15646632--15646684 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15646622 GTTGGCTTAG
* *
15646632 GCATACGGAGTTCGTT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
15646658 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15646684 G
1 G
15646685 GGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15646771 original size:11 final size:11
Alignment explanation
Indices: 15646755--15646787 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
15646745 CTCGGGGCAC
15646755 CATCGTCGGAG
1 CATCGTCGGAG
15646766 CATCGTCGGAG
1 CATCGTCGGAG
15646777 CATCGTCGGAG
1 CATCGTCGGAG
15646788 AGCTTAACCG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.18, C:0.27, G:0.36, T:0.18
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:15647940 original size:26 final size:26
Alignment explanation
Indices: 15647903--15647955 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15647893 GTTGGCTTAG
*
15647903 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
15647929 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15647955 G
1 G
15647956 ATCAAATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15648615 original size:26 final size:26
Alignment explanation
Indices: 15648586--15648635 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
15648576 GACTTAGGTG
*
15648586 TACAGAGTTCATCCCCAGTCTAAGCA
1 TACAGAGTTCATCCCCAATCTAAGCA
*
15648612 TACAGAGTTCATTCCCAATCTAAG
1 TACAGAGTTCATCCCCAATCTAAG
15648636 ATTGGATCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.32, C:0.28, G:0.14, T:0.26
Consensus pattern (26 bp):
TACAGAGTTCATCCCCAATCTAAGCA
Found at i:15649090 original size:26 final size:26
Alignment explanation
Indices: 15649060--15649112 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15649050 GTTGGCTTAG
*
15649060 GCATACGGAGTTCA-GTCCATGTCTAA
1 GCATACAGAGTTCATGTCCA-GTCTAA
*
15649086 GCATACAGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATGTCCAGTCTAA
15649112 G
1 G
15649113 ATTAGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATGTCCAGTCTAA
Found at i:15649629 original size:26 final size:26
Alignment explanation
Indices: 15649599--15649651 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15649589 GTTGGCTTAG
*
15649599 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAATTCATTCCCA-GTCTAA
*
15649625 GCATATGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
15649651 G
1 G
15649652 ATCGAATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:15650864 original size:26 final size:26
Alignment explanation
Indices: 15650835--15650887 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15650825 GTTAACTTAG
* *
15650835 GCATACGGAGTTCATCCCCCGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
15650861 GCATACATAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
15650887 G
1 G
15650888 ATCGAACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:15651349 original size:159 final size:159
Alignment explanation
Indices: 15650948--15651364 Score: 362
Period size: 159 Copynumber: 2.6 Consensus size: 159
15650938 GATCGGACCG
* * ** * * *
15650948 ATCCCCAGCTTGCGCATTCTGCCTCTCT-GATCGACTGAGTGCTTGCACGTCCGTTTCATGGCTT
1 ATCCCCAGCTTGTGCATTCTGCCTCTCTAG-TCGGCTGAGTGCCCGCACGTTCATTTCGTGGCTT
* **
15651012 GGCTTAGGCATAG-GGAGTTTATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGTAGTAG
65 GGCTTAGGCAT-GCGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGCAGTAGTAG
* * *
15651076 GATCGACAGCACGTAGAAGGGGACCGGTTCG
129 GATCGACAGCACGAAGAAGGGGACCGGGTCA
*** * * * * ** ** *
15651107 ATCCTTGGTTTGTGCATTATACCTCT-TCAGTCGGCTCAACGCCCGCACACTCTTTTCGTGAG-T
1 ATCCCCAGCTTGTGCATTCTGCCTCTCT-AGTCGGCTGAGTGCCCGCACGTTCATTTCGTG-GCT
* * * * * ** * *
15651170 TGACTTATGCATACGAAGTTCATTCCCA-GTCTTAG-ATCGGACCGGACCGAGGGTTGCAGTAGT
64 TGGCTTAGGCATGCGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGCAGTAGT
* ** **
15651233 AGGATCGACAGCATGAAGGGGGGGATTGGGTCA
127 AGGATCGACAGCACGAAGAAGGGGACCGGGTCA
15651266 ATCCCCAGCTTGTGCATTCTGCCTCTCTAGTCGGCTGAGTGCCCGCACGTTCATTTCGTGGCTTG
1 ATCCCCAGCTTGTGCATTCTGCCTCTCTAGTCGGCTGAGTGCCCGCACGTTCATTTCGTGGCTTG
*
15651331 GCTTAGGCATGCGGAGTTCACTCC-TGGTCTAAGC
66 GCTTAGGCATGCGGAGTTCATTCCAT-GTCTAAGC
15651365 ATACGGAGTT
Statistics
Matches: 191, Mismatches: 56, Indels: 21
0.71 0.21 0.08
Matches are distributed among these distances:
158 6 0.03
159 179 0.94
160 6 0.03
ACGTcount: A:0.18, C:0.26, G:0.28, T:0.28
Consensus pattern (159 bp):
ATCCCCAGCTTGTGCATTCTGCCTCTCTAGTCGGCTGAGTGCCCGCACGTTCATTTCGTGGCTTG
GCTTAGGCATGCGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGCAGTAGTAGGA
TCGACAGCACGAAGAAGGGGACCGGGTCA
Found at i:15651386 original size:26 final size:26
Alignment explanation
Indices: 15651337--15651389 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15651327 CTTGGCTTAG
* **
15651337 GCATGCGGAGTTCACTCCTGGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
*
15651363 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
15651389 G
1 G
15651390 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:15651488 original size:11 final size:11
Alignment explanation
Indices: 15651459--15651495 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
15651449 CCCGGGGCAC
*
15651459 CATCGCTAGTG
1 CATCGCTGGTG
15651470 CATCGCTGGTG
1 CATCGCTGGTG
*
15651481 CATCGCTGGAG
1 CATCGCTGGTG
15651492 CATC
1 CATC
15651496 ACAGGAGAGC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.16, C:0.30, G:0.30, T:0.24
Consensus pattern (11 bp):
CATCGCTGGTG
Found at i:15652307 original size:158 final size:158
Alignment explanation
Indices: 15652031--15652577 Score: 420
Period size: 159 Copynumber: 3.4 Consensus size: 158
15652021 TTACGCATCC
* * * * *
15652031 TGCCTCTCTGGTCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTC
1 TGCCTCTCCGATCGACTGAGTGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTC
* * * * *
15652096 ATTCCCAGTCTAAGATCGAACTGAACTGAGGGTTGCGACAGCAGGATCGACAGCATGTAG-GGGG
66 ATT-CCAGTCTAAGACCGAACAGAACTGAGGGTTGCGACAGCAGGACCGACAGCACGCAGAGGGG
* * * * *
15652160 GACTGGGCCGATCCCCTACTTGCGCATTT
130 GACCGGACAGATCCCCGACTTGCGCATTA
* * * * *
15652189 TGCCTCTCCGATCGACTGAATGCCCGCATGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTC
1 TGCCTCTCCGATCGACTGAGTGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTC
* * * * * * * *
15652254 ATTCCATGTCTAAGCCCTAGCCAG-ATTGAGGGTTGTGGCAGCGGGACCTACAGCACGCAGAGGG
66 ATTCCA-GTCTAAGACCGA-ACAGAACTGAGGGTTGCGACAGCAGGACCGACAGCACGCAGAGGG
*
15652318 GGACCGGACAGATCCTCGACTTGCGCATTA
129 GGACCGGACAGATCCCCGACTTGCGCATTA
* * * * * * * *
15652348 TGCTTTTTCGATCGGCTCAGTGCCCGTATGCTCGTTTCCTGGGTTGACTTAGGCATACGAAGTTC
1 TGCCTCTCCGATCGACTGAGTGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTC
* * * * * ** * * *
15652413 ATTCCCAATCTGAGATCGAATC-GGACCGAGGGTTGCGGTAGCAGGATCAACAGCACGTAG-GAG
66 ATT-CCAGTCTAAGACCGAA-CAGAACTGAGGGTTGCGACAGCAGGACCGACAGCACGCAGAG-G
* * * * * *
15652476 GGCACCGGGTC-GATCACCGGCTTACGCATTC
128 GGGACC-GGACAGATCCCCGACTTGCGCATTA
* * * * * * * * * * *
15652507 TACCTCTCCGGTCGTCTGAGCGCTCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATATGGAGCTC
1 TGCCTCTCCGATCGACTGAGTGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTC
15652572 ATTCCA
66 ATTCCA
15652578 TGATTAAAAA
Statistics
Matches: 302, Mismatches: 79, Indels: 16
0.76 0.20 0.04
Matches are distributed among these distances:
157 3 0.01
158 101 0.33
159 192 0.64
160 6 0.02
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (158 bp):
TGCCTCTCCGATCGACTGAGTGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTC
ATTCCAGTCTAAGACCGAACAGAACTGAGGGTTGCGACAGCAGGACCGACAGCACGCAGAGGGGG
ACCGGACAGATCCCCGACTTGCGCATTA
Found at i:15652652 original size:12 final size:12
Alignment explanation
Indices: 15652635--15652664 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
15652625 GAGGGTTGCG
15652635 GCAGCAGGATCA
1 GCAGCAGGATCA
*
15652647 GCAGCAGGATCG
1 GCAGCAGGATCA
15652659 GCAGCA
1 GCAGCA
15652665 CGTAGAGGGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.30, C:0.27, G:0.37, T:0.07
Consensus pattern (12 bp):
GCAGCAGGATCA
Found at i:15653459 original size:26 final size:26
Alignment explanation
Indices: 15653423--15653475 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15653413 GTTGACTTAG
*
15653423 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
15653449 GCATATGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15653475 G
1 G
15653476 GTCAAACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15653811 original size:159 final size:159
Alignment explanation
Indices: 15653648--15653942 Score: 344
Period size: 159 Copynumber: 1.9 Consensus size: 159
15653638 AGTTGGACTG
* * *
15653648 AGGGTTGTGGTAG-CGGGACCGACAGCATGCAGAGGGGGACCAGGCCGATACCCGGCTTGC-GCA
1 AGGGTTGTGGTAGTAGGG-CCGACAGCACGCAGAGGGGGACCAGGCCGATACCCGGCTTACAG-A
* *
15653711 TTATGCCTCTTC-AACGACCTCAGTGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGA
64 TTATGCCTCTTCGAACGA-CTCAATGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAA
15653775 GTTCATTCCCAGTCTAAGATCAGACCAAATCA
128 GTTCATTCCCAGTCTAAGATCAGACCAAATCA
** * * * * *
15653807 AGGGTTGTGGTAGTAGGGTTGACAGCACGTAGAGGGGGATCGGGTCGATTCCCGGCTTACAGATT
1 AGGGTTGTGGTAGTAGGGCCGACAGCACGCAGAGGGGGACCAGGCCGATACCCGGCTTACAGATT
* ** * * * * * * *
15653872 CTGCCTCTTCGGTCGATTGAATGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATATGAAGTT
66 ATGCCTCTTCGAACGACTCAATGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTT
15653937 CATTCC
131 CATTCC
15653943 ATGTCTAGGC
Statistics
Matches: 111, Mismatches: 22, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
159 104 0.94
160 7 0.06
ACGTcount: A:0.20, C:0.24, G:0.30, T:0.25
Consensus pattern (159 bp):
AGGGTTGTGGTAGTAGGGCCGACAGCACGCAGAGGGGGACCAGGCCGATACCCGGCTTACAGATT
ATGCCTCTTCGAACGACTCAATGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTT
CATTCCCAGTCTAAGATCAGACCAAATCA
Found at i:15654322 original size:26 final size:26
Alignment explanation
Indices: 15654293--15654343 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15654283 GTTGACTTAG
15654293 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
15654319 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
15654344 TGTTCAGACC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15656024 original size:26 final size:26
Alignment explanation
Indices: 15655994--15656046 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15655984 GTTGGCTTAG
*
15655994 GCATACGCAGTTCATTCC-ATGTCTAA
1 GCATACGAAGTTCATTCCTA-GTCTAA
*
15656020 GCATATGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
15656046 G
1 G
15656047 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:15656220 original size:26 final size:26
Alignment explanation
Indices: 15656190--15656242 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15656180 GTTGACTTTG
15656190 GCATACAG-AGTTCATCCCCAGTCTAA
1 GCATA-AGAAGTTCATCCCCAGTCTAA
* *
15656216 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATAAGAAGTTCATCCCCAGTCTAA
15656242 G
1 G
15656243 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATAAGAAGTTCATCCCCAGTCTAA
Found at i:15656401 original size:184 final size:184
Alignment explanation
Indices: 15655924--15656513 Score: 548
Period size: 184 Copynumber: 3.1 Consensus size: 184
15655914 ATCGGATAGG
* * * * *
15655924 TCCCCGGCTTACGCATTCTGCCTCT-TCGATCGACTGAATGCCCGCACACTCATTTCATGGGTTG
1 TCCCCGGCTTGCGCATTCTGCCTCTCT-GATCGGCTGAACGCCCGCACGCTCGTTTCATGGGTTG
* * * * *
15655988 GCTTAGGCATACGCAGTTCAT-TCCATGTCTAAGCATATGAAGTTCATTCCTAGTCTAAGATTGG
65 ACTTAGGCATACGGAGTTCATCTCCCT-TCTAAGCATATGAAGTTCATTCCCAGTCTAAGATCGG
* *
15656052 ACCGGATCGAGGGTTGCGGTAGCAGGACCAGAAGTAGGATCGACAGCATGTA-AGGAGGGATCGG
129 ACCGGACCGAGGGTTGCGG-A-CA-G--C---A--A-GATCGACAGCA--CACAGG-GGGATCGG
15656116 GCCGA
180 GCCGA
* * * * * * *
15656121 TCCCTGGCTTGTGCATT-TACCTCTCTGATCAGTTGAGCGCCCGTACGCTCGTTTCATGGGTTGA
1 TCCCCGGCTTGCGCATTCTGCCTCTCTGATCGGCTGAACGCCCGCACGCTCGTTTCATGGGTTGA
* * *
15656185 CTTTGGCATACAGAGTTCATC-CCCAGTCTAAGCATATGAAGTTCATTCCCAGTCTAAGATCGGA
66 CTTAGGCATACGGAGTTCATCTCCC-TTCTAAGCATATGAAGTTCATTCCCAGTCTAAGATCGGA
* *
15656249 CCGGACCGAGGGTTG-GGACAGCAAGATCGACAGCACACAGGGGAGATCGGGCTGG
130 CCGGACCGAGGGTTGCGGACAGCAAGATCGACAGCACACAGGGG-GATCGGGCCGA
* * * * *
15656304 TCCCCAGCTTGCGCATTCTGCCTCTCTGGTCGGCTGAACGCCCGCATGCTCGTTTCTTAGGTTGA
1 TCCCCGGCTTGCGCATTCTGCCTCTCTGATCGGCTGAACGCCCGCACGCTCGTTTCATGGGTTGA
* * ** * ** * * *
15656369 CTTAGGCATATGGAGTTCATCTCCCTTCTAAGCTTGCGGAGTTCATTTACAGGCTAAAATCGAAC
66 CTTAGGCATACGGAGTTCATCTCCCTTCTAAGCATATGAAGTTCATTCCCAGTCTAAGATCGGAC
* * * * *
15656434 CGGTCCGAGGGTTGCGG-CAAC-AGCATCGACAGCACGCAGGGGGGACCGAGCCGA
131 CGGACCGAGGGTTGCGGACAGCAAG-ATCGACAGCACACA-GGGGGATCGGGCCGA
15656488 TCCCCGGCTTGCGCATTCTGCCTCTC
1 TCCCCGGCTTGCGCATTCTGCCTCTC
15656514 CGGATGTCTA
Statistics
Matches: 326, Mismatches: 57, Indels: 33
0.78 0.14 0.08
Matches are distributed among these distances:
182 3 0.01
183 28 0.09
184 158 0.48
185 10 0.03
187 1 0.00
190 1 0.00
192 1 0.00
193 2 0.01
194 1 0.00
195 2 0.01
196 104 0.32
197 15 0.05
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.25
Consensus pattern (184 bp):
TCCCCGGCTTGCGCATTCTGCCTCTCTGATCGGCTGAACGCCCGCACGCTCGTTTCATGGGTTGA
CTTAGGCATACGGAGTTCATCTCCCTTCTAAGCATATGAAGTTCATTCCCAGTCTAAGATCGGAC
CGGACCGAGGGTTGCGGACAGCAAGATCGACAGCACACAGGGGGATCGGGCCGA
Found at i:15657729 original size:26 final size:26
Alignment explanation
Indices: 15657700--15657752 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15657690 GTTAGCTTAG
*
15657700 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
15657726 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15657752 G
1 G
15657753 AGTTTAAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15658223 original size:27 final size:27
Alignment explanation
Indices: 15658165--15658223 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
15658155 ACTCTATCTA
* ***
15658165 AAAAAGTTTTAAAAAATCTTGAACCGT
1 AAAAAGTTTTAAAAAATCATGAAAAAT
15658192 AAAAAGTTTT-AAAAATCATGAAAAAT
1 AAAAAGTTTTAAAAAATCATGAAAAAT
15658218 AGAAAA
1 A-AAAA
15658224 CGGGTCGTCT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 13 0.48
27 14 0.52
ACGTcount: A:0.58, C:0.07, G:0.10, T:0.25
Consensus pattern (27 bp):
AAAAAGTTTTAAAAAATCATGAAAAAT
Found at i:15658454 original size:26 final size:26
Alignment explanation
Indices: 15658424--15658474 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15658414 TTGACTTAGG
*
15658424 CATACGGAGTTCA-TCCTCAGTCTAAA
1 CATACCGAGTTCATTCC-CAGTCTAAA
15658450 CATACCGAGTTCATTCCCAGTCTAA
1 CATACCGAGTTCATTCCCAGTCTAA
15658475 GATTGAATTG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACCGAGTTCATTCCCAGTCTAAA
Found at i:15658949 original size:26 final size:26
Alignment explanation
Indices: 15658900--15658952 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15658890 GTTGGCTTAG
* *
15658900 GCATATGGAGTTCATTTCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
15658926 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
15658952 G
1 G
15658953 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:15659925 original size:158 final size:158
Alignment explanation
Indices: 15659384--15660145 Score: 628
Period size: 158 Copynumber: 4.8 Consensus size: 158
15659374 GCAGTAAGAT
* * * * * *
15659384 CGACAGCACGTAAGGTGGGACCGGGCTGATCGCC-GACTTGCGCATTCTGCCTCTTCGGCCGGTT
1 CGACAGCACGT-AGGGGGGATCGAGCTGATCCCCTG-CTTGCGCATTATGCCTCTCCGGCCGGTT
* ** **
15659448 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG-AT
64 GAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCCAGTCTAAGCCC
* * * * *
15659512 CAGATCGGACCGAGGGTTACGACAGCATGAT
129 CAG-TCAGACCGAGGGTTGCGGCAGCAGGAC
** * * *
15659543 CGGTAGCTTAC--AGGGGGGATCGAGCTGATCCCC-GACTTGCACATTTTGCCTCTCCTGCCGGT
1 CGACAGC--ACGTAGGGGGGATCGAGCTGATCCCCTG-CTTGCGCATTATGCCTCTCCGGCCGGT
* * * * * * *
15659605 TGAGAGCCCGTACGCCCATTTCATGGGTTGGCTTAGGGATAGGGAGTTCATT-CCATGTCTAAGC
63 TGAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCCA-GTCTAAGC
* * *
15659669 CCCAGCCAGACCGAGGGTTGTGGCAGCGGGAC
127 CCCAGTCAGACCGAGGGTTGCGGCAGCAGGAC
* * * * * *
15659701 CGACAGCACGCAGAGGGGGGACCGAG-TCGATCCCCAGCTTGTGCATTATGCCTCTCCGGCCAGC
1 CGACAGCACG--TAGGGGGGATCGAGCT-GATCCCCTGCTTGCGCATTATGCCTCTCCGGCCGGT
* * * * * *
15659765 TGAGCTCCCGAACGCTCGTTTCATGGGTTGACCTAGGCATATGAAGTTCATTCCCAGTCTAAG-A
63 TGAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCCAGTCTAAGCC
* * * * * *
15659829 TCGGATCAGACCAAGGGTTGCGGTAGTAGGAT
128 CCAG-TCAGACCGAGGGTTGCGGCAGCAGGAC
* * * ** * * *
15659861 CAACAGCATGTAGGGGGGATCG-GGTCGATCCCCTGCTTTTGCATTCTGCCTCTCCGGTCGGCTG
1 CGACAGCACGTAGGGGGGATCGAGCT-GATCCCCTGCTTGCGCATTATGCCTCTCCGGCCGGTTG
* * * *
15659925 AGCGCCGGCACGCTTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCC
65 AGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCCA-GTCTAAGCCC
* * **
15659989 CAGTCAGACTGAGGGTTGTGGCAGTGGGAC
129 CAGTCAGACCGAGGGTTGCGGCAGCAGGAC
* * * **
15660019 CGACAGCACGTAGAGGGGGATCGGGCTGA-CCCCTGGCTTACGCATTATACCTCTCCGATCGGTT
1 CGACAGCACGTAG-GGGGGATCGAGCTGATCCCCT-GCTTGCGCATTATGCCTCTCCGGCCGGTT
* * * * * *
15660083 TAGCACCCGAACGCTCATTTTGTGGGTTGATTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
64 GAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCCAGTCTAAGC
15660146 AGTAGGATCG
Statistics
Matches: 480, Mismatches: 104, Indels: 38
0.77 0.17 0.06
Matches are distributed among these distances:
156 2 0.00
157 7 0.01
158 247 0.51
159 96 0.20
160 122 0.25
161 6 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
CGACAGCACGTAGGGGGGATCGAGCTGATCCCCTGCTTGCGCATTATGCCTCTCCGGCCGGTTGA
GCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCCAGTCTAAGCCCCA
GTCAGACCGAGGGTTGCGGCAGCAGGAC
Found at i:15659977 original size:318 final size:316
Alignment explanation
Indices: 15659384--15660144 Score: 850
Period size: 318 Copynumber: 2.4 Consensus size: 316
15659374 GCAGTAAGAT
* * * * *
15659384 CGACAGCACGTA-AGGTGGGACCGGGCTGATCGCCGA-CTTGCGCATTCTGCCTCTTCGGCCGGT
1 CGACAGCACGCAGAGG-GGGACCGGGCTGA-CCCCTAGCTTGCGCATTATGCCTCTCCGGCCGGT
* * *
15659447 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGAT
64 TGAGCACCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATAGA-AGTTCATTCCCAGTCTAAGAT
* * * *** *
15659512 CAGATCGGACCGAGGGTTACGACAGCATGATCGGTAGCTTACAGGGGGGATCGAGCTGATCCCCG
128 CAGATCAGACCAAGGGTTACGACAGCAGGATCAACAGCATACAGGGGGGATCGAGCTGATCCCCG
* * * *
15659577 ACTTGCACATTTTGCCTCTCCTGCCGGTTGAGAGCCCGTACGCCCATTTCATGGGTTGGCTTAGG
193 ACTTGCACATTCTGCCTCTCCGGCCGGCTGAGAGCCCGCACGCCCATTTCATGGGTTGGCTTAGG
*
15659642 GATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGGGAC
258 CATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGGGAC
* * *
15659701 CGACAGCACGCAGAGGGGGGACCGAG-TCGATCCCC-AGCTTGTGCATTATGCCTCTCCGGCCAG
1 CGACAGCACGCAGA-GGGGGACCGGGCT-GA-CCCCTAGCTTGCGCATTATGCCTCTCCGGCCGG
* * * *
15659764 CTGAGCTCCCGAACGCTCGTTTCATGGGTTGACCTAGGCATATGAAGTTCATTCCCAGTCTAAGA
63 TTGAGCACCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATA-GAAGTTCATTCCCAGTCTAAGA
* * ** * ** *
15659829 TCGGATCAGACCAAGGGTTGCGGTAGTAGGATCAACAGCATGTAGGGGGGATCG-GGTCGATCCC
127 TCAGATCAGACCAAGGGTTACGACAGCAGGATCAACAGCATACAGGGGGGATCGAGCT-GATCCC
*** * * * *** *
15659893 CTG-CTTTTGCATTCTGCCTCTCCGGTCGGCTGAGCGCCGGCACGCTTGTTTCGTGGGTTGGCTT
191 C-GACTTGCACATTCTGCCTCTCCGGCCGGCTGAGAGCCCGCACGCCCATTTCATGGGTTGGCTT
* * *
15659957 AGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACTGAGGGTTGTGGCAGTGGGAC
255 AGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGGGAC
* * * * * ** *
15660019 CGACAGCACGTAGAGGGGGATCGGGCTGACCCCTGGCTTACGCATTATACCTCTCCGATCGGTTT
1 CGACAGCACGCAGAGGGGGACCGGGCTGACCCCTAGCTTGCGCATTATGCCTCTCCGGCCGGTTG
* * * *
15660084 AGCACCCGAACGCTCATTTTGTGGGTTGATTTAGGCATACGGAGTTCATTCCCAGTCTAAG
66 AGCACCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATA-GAAGTTCATTCCCAGTCTAAG
15660145 CAGTAGGATC
Statistics
Matches: 369, Mismatches: 66, Indels: 18
0.81 0.15 0.04
Matches are distributed among these distances:
316 4 0.01
317 101 0.27
318 260 0.70
319 4 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (316 bp):
CGACAGCACGCAGAGGGGGACCGGGCTGACCCCTAGCTTGCGCATTATGCCTCTCCGGCCGGTTG
AGCACCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATAGAAGTTCATTCCCAGTCTAAGATCAG
ATCAGACCAAGGGTTACGACAGCAGGATCAACAGCATACAGGGGGGATCGAGCTGATCCCCGACT
TGCACATTCTGCCTCTCCGGCCGGCTGAGAGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCAT
AGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGCGGGAC
Found at i:15660477 original size:26 final size:26
Alignment explanation
Indices: 15660447--15660499 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15660437 CTTGACTTAG
15660447 GCATACGGAGTTCA-TCCCAAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
15660473 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15660499 G
1 G
15660500 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15660515 original size:196 final size:195
Alignment explanation
Indices: 15660143--15660520 Score: 510
Period size: 196 Copynumber: 1.9 Consensus size: 195
15660133 TCCCAGTCTA
* * * *
15660143 AGCAGTAGGATCGACAACACATAGGGGGACCGAGTAGGTCCCCGGCTTGCACACTCTGCCTCTCC
1 AGCAGTAGGATCGACAACACAAAAGAGGACCGAGTAGATCCCCGGCTTGCACACTCTGCCTCTCC
* * * * * * * *
15660208 GACCGGTTGAACGCCCGTATGCTCATTTCGTGGGTTGGCTTAGGCATACGTAGTTCATTCCATGT
66 GACCGGTTGAACGCCCGCACGCTCATTTCATGGCTTGACTTAGGCATACGGAGTTCATCCCAAGT
*
15660273 CTAAGCATAAGGAGTTCATTCCTAGTCTAAGATCAAACCAGACCGAGGGTTGCGGTAACAGGACC
131 CTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGGTAACAGGACC
*
15660338 AGCAGTAGGATCGGCAACACGCAAAAGAGGACCGAGCT-GATCCCCGGCTTGCACA-TCTGCCTC
1 AGCAGTAGGATCGACAACA--CAAAAGAGGACCGAG-TAGATCCCCGGCTTGCACACTCTGCCTC
* *
15660401 TCC-AGCCGGTTGAACGTCTGCACGCTCATTTCATGGCTTGACTTAGGCATACGGAGTTCATCCC
63 TCCGA-CCGGTTGAACGCCCGCACGCTCATTTCATGGCTTGACTTAGGCATACGGAGTTCATCCC
* ** * *
15660465 AAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTG
127 AAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTG
15660521 GGACAGCAGG
Statistics
Matches: 158, Mismatches: 21, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
195 19 0.12
196 110 0.70
197 28 0.18
198 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.26, T:0.22
Consensus pattern (195 bp):
AGCAGTAGGATCGACAACACAAAAGAGGACCGAGTAGATCCCCGGCTTGCACACTCTGCCTCTCC
GACCGGTTGAACGCCCGCACGCTCATTTCATGGCTTGACTTAGGCATACGGAGTTCATCCCAAGT
CTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCGGTAACAGGACC
Found at i:15660837 original size:159 final size:157
Alignment explanation
Indices: 15660480--15660848 Score: 370
Period size: 159 Copynumber: 2.3 Consensus size: 157
15660470 TAAGCATACG
* * *
15660480 GAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGGGACAGCAGGATCGACAGCACACA
1 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGGG-CAGCAGGACCGACAGCACACA
* **
15660545 GGGGGGATCAGGCCGATCCCTGGCTTCCGCATTATGCCTCTCCGATCGGCTGAGCCCCCGTACGC
65 GGGGGGATCAGGCCGATCCCTGGCTTCCGCATTATGCCTCTCCGATCGGCTCAGCCCCCAAACGC
* * * **
15660610 CCATTTCATGGGTTGGCGTAGGCATAGG
130 CCAGTTCATGGGTTGACGTAGGCACACA
** * *
15660638 GAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCAAAGGTTGTGGCAGCAGGACCTG-CAGCAC
1 GAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTG-GGCAGCAGGACC-GACAGCAC
** * * * * * *
15660700 GTAGAGGGGGATCGGGTCGATCCTTGGCTTGCGCATTATGCCTCTCCG-GCTGGCTCAGCGCCCA
62 ACAG-GGGGGATCAGGCCGATCCCTGGCTTCCGCATTATGCCTCTCCGATC-GGCTCAGCCCCCA
* * *
15660764 AACGCTC-GTTCGGTGGGTTGACTTAGGCACACA
125 AACGCCCAGTTC-ATGGGTTGACGTAGGCACACA
* *
15660797 GAGTTCATTCCCAGTCTTAGATCAGACCGAACCGAGGGTTGCGGCAGCAGGA
1 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTG-GGCAGCAGGA
15660849 TAAATAGCAT
Statistics
Matches: 169, Mismatches: 33, Indels: 17
0.77 0.15 0.08
Matches are distributed among these distances:
157 3 0.02
158 52 0.31
159 111 0.66
160 3 0.02
ACGTcount: A:0.20, C:0.28, G:0.31, T:0.21
Consensus pattern (157 bp):
GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGGGCAGCAGGACCGACAGCACACAG
GGGGGATCAGGCCGATCCCTGGCTTCCGCATTATGCCTCTCCGATCGGCTCAGCCCCCAAACGCC
CAGTTCATGGGTTGACGTAGGCACACA
Found at i:15660982 original size:26 final size:26
Alignment explanation
Indices: 15660946--15660998 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15660936 GTTGGCTTAG
15660946 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15660972 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15660998 G
1 G
15660999 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15661499 original size:696 final size:695
Alignment explanation
Indices: 15660165--15661503 Score: 1729
Period size: 696 Copynumber: 1.9 Consensus size: 695
15660155 GACAACACAT
* *
15660165 AGGGGGACCGAGTAGGTCCCCGGCTTGCACACTCTGCCTCTCCGACCGGTTGAACGCCCGTATGC
1 AGGGGGACCGAGTAGGTCCCCGGCTTGCACACTCTGCCTCT-CGACCGGTTGAACGCCCGCACGC
*
15660230 TCATTTCGTGGGTTGGCTTAGGCATACGTAGTTCATTCCATGTCTAAGCATAAGGAGTTCATTCC
65 TCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAAGGAGTTCATTCC
* * * *
15660295 TAGTCTAAGATCAAACCAGACCGAGGGTTGCGGTAACAGGACCAGCAGTAGGATCGGCAACACGC
130 CAGTCTAAGATCAAACCAGACCAAGGGTTGCGGTAACAGGACCAACAGTAGGATCGACAACACGC
* ** * ** * *
15660360 AAAAGAGGACCGAGCTGATCCCCGGCTTGCACATCTGCCTCTCCAGCCGGTTGAACGTCTGCACG
195 AAAAGAGGACCGAACCAATCCCCGACTTGCACATCTGCCTCTCCAGCCGACTGAACGCCCGCACG
*
15660425 CTCATTTCATGGCTTGACTTAGGCATACGGAGTTCATCCCAAGTCTAAGCATACGGAGTTCATTC
260 CTCATTTCATGGCTTGACTTAGGCATACGGAGTTCATCCCAAGTCTAAGCATACGAAGTTCATTC
* * *
15660490 CCAGTCTAAGATCGGATCGGACCGAGGGTTGGGACAGCAGGATCGACAGCACACAGGGGGGATCA
325 CCAGTCTAAGATCGGACCGGACCGAAGGTTGCGACAGCAGGATCGACAGCACACAGGGGGGATCA
* * * * * *
15660555 GGCCGATCCCTGGCTTCCGCATTATGCCTCTCCGATCGGCTGAGCCCCCGTACGCCCATTTCATG
390 GGCCGATCCCCGACATCCACATTATGCCTCTCCGATCGGCTAAGCACCCGTACGCCCATTTCATG
* **
15660620 GGTTGGCGTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAAGGTTGTGGCAG
455 GGCTGGCGTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAAGGTTGTGGCAG
** * * **
15660685 CAGGACCTGCAGCACGTAGAGGGGGATCGGGTCGATCCTTGGCTTGCGCATTATGCCTCTCCGGC
520 CAGGACCTGCAGCACACAGAAGGGGATCGAGTCGATCCTCAGCTTGCGCATTATGCCTCTCCGGC
* * *
15660750 TGGCTCAGCGCCCAAACGCTCGTTCGGTGGGTTGACTTAGGCACACAGAGTTCATTCCCAGTCTT
585 TAGCTCAGCACCCAAACACTCGTTCGGTGGGTTGACTTAGGCACACAGAGTTCATTCCCAGTCTT
15660815 AGATCAGACCGAACCGAGGGTTGCGGCAGCAGGATAAATAGCATGC
650 AGATCAGACCGAACCGAGGGTTGCGGCAGCAGGATAAATAGCATGC
* * * * **
15660861 AGGGGGACCGAGTCGGTCCCTGGCTTGCGCATTCTGCCTCT-GTAGCCGGTTGAGTG-CCGCACG
1 AGGGGGACCGAGTAGGTCCCCGGCTTGCACACTCTGCCTCTCG-A-CCGGTTGAACGCCCGCACG
* *
15660924 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTC
64 CTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAAGGAGTTCATTC
* * * *
15660989 CCAGTCTAAGATCGAACCGGACCAAGGGTTGCGGTAGCAGGACCAACAGCT-GGATCGACAGCAC
129 CCAGTCTAAGATCAAACCAGACCAAGGGTTGCGGTAACAGGACCAACAG-TAGGATCGACAACAC
*** * ** * * *
15661053 GCACGGGGGGACCGAACCAATCCCCGACTTGTGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGT
193 GCAAAAGAGGACCGAACCAATCCCCGACTTGCACA-TCTGCCTCTCCAGCCGACTGAACGCCCGC
* * * * * * *
15661118 AGGCTCGTTTCGTGGGTTTACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGAAGTTCA
257 ACGCTCATTTCATGGCTTGACTTAGGCATACGGAGTTCATCCCAAGTCTAAGCATACGAAGTTCA
* * *
15661183 TTCCCAGTCTAAGATCGGACCGGATCGAAGGTTGCGACAGTAGGATCGACAGCACGCAGGGGGGA
322 TTCCCAGTCTAAGATCGGACCGGACCGAAGGTTGCGACAGCAGGATCGACAGCACACAGGGGGGA
* * * * * * **
15661248 TCGGGTCGATCCCCGACATGCACATTCTGCCTCTCCTG-TCGGTTAAGCACCCGTACTCCTGTTT
387 TCAGGCCGATCCCCGACATCCACATTATGCCTCTCC-GATCGGCTAAGCACCCGTACGCCCATTT
* * ** * *
15661312 CGTGGGCTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTTGGACCGAGGGTTGTG
451 CATGGGCTGGCGTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAAGGTTGTG
** * *
15661377 GCAGTGGGA-CTGGCAGCACACAGAAGGGGATCGAGTCGATCCTCAGCTTGCGTATTTTGCCTCT
516 GCAGCAGGACCT-GCAGCACACAGAAGGGGATCGAGTCGATCCTCAGCTTGCGCATTATGCCTCT
* * * * *
15661441 CCGG-TCAGCTGAGCACCCAAACACTCGTTTC-GTGGGTTGGCTTTGGCATACGGAGTTCATTCC
580 CCGGCT-AGCTCAGCACCCAAACACTCG-TTCGGTGGGTTGACTTAGGCACACAGAGTTCATTCC
15661504 ATGTCTAAGC
Statistics
Matches: 544, Mismatches: 91, Indels: 16
0.84 0.14 0.02
Matches are distributed among these distances:
694 1 0.00
695 150 0.28
696 389 0.72
697 4 0.01
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (695 bp):
AGGGGGACCGAGTAGGTCCCCGGCTTGCACACTCTGCCTCTCGACCGGTTGAACGCCCGCACGCT
CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAAGGAGTTCATTCCC
AGTCTAAGATCAAACCAGACCAAGGGTTGCGGTAACAGGACCAACAGTAGGATCGACAACACGCA
AAAGAGGACCGAACCAATCCCCGACTTGCACATCTGCCTCTCCAGCCGACTGAACGCCCGCACGC
TCATTTCATGGCTTGACTTAGGCATACGGAGTTCATCCCAAGTCTAAGCATACGAAGTTCATTCC
CAGTCTAAGATCGGACCGGACCGAAGGTTGCGACAGCAGGATCGACAGCACACAGGGGGGATCAG
GCCGATCCCCGACATCCACATTATGCCTCTCCGATCGGCTAAGCACCCGTACGCCCATTTCATGG
GCTGGCGTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAAGGTTGTGGCAGC
AGGACCTGCAGCACACAGAAGGGGATCGAGTCGATCCTCAGCTTGCGCATTATGCCTCTCCGGCT
AGCTCAGCACCCAAACACTCGTTCGGTGGGTTGACTTAGGCACACAGAGTTCATTCCCAGTCTTA
GATCAGACCGAACCGAGGGTTGCGGCAGCAGGATAAATAGCATGC
Found at i:15661522 original size:26 final size:26
Alignment explanation
Indices: 15661486--15661538 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15661476 GTTGGCTTTG
15661486 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15661512 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15661538 G
1 G
15661539 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15662237 original size:26 final size:26
Alignment explanation
Indices: 15662208--15662258 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
15662198 GTTGACTTAG
*
15662208 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
15662234 GCATACGAAGTTCATTCCCAGTCTA
1 GCATACGAAGTTCATCCCCAATCTA
15662259 TGCTCGCATG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:15665194 original size:24 final size:23
Alignment explanation
Indices: 15665167--15665245 Score: 77
Period size: 24 Copynumber: 3.3 Consensus size: 23
15665157 CGTGATCCTT
*
15665167 TGACCATGAAAACTCGTGGTCCAC
1 TGACCATG-AAACTCATGGTCCAC
* *
15665191 TGACCAATGTATCTCATGGTCCAC
1 TGACC-ATGAAACTCATGGTCCAC
* * *
15665215 TGACCAACGCAGCTCATGGTCCAC
1 TGACC-ATGAAACTCATGGTCCAC
15665239 TGACCAT
1 TGACCAT
15665246 CCCGCTTGTG
Statistics
Matches: 47, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
23 1 0.02
24 43 0.91
25 3 0.06
ACGTcount: A:0.27, C:0.32, G:0.19, T:0.23
Consensus pattern (23 bp):
TGACCATGAAACTCATGGTCCAC
Found at i:15667880 original size:26 final size:26
Alignment explanation
Indices: 15667850--15667902 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15667840 GTTGACTTAG
*
15667850 GCATACGGAGTTCA-TCTCCAGTCTAA
1 GCATACAGAGTTCATTC-CCAGTCTAA
15667876 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15667902 G
1 G
15667903 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15668594 original size:158 final size:158
Alignment explanation
Indices: 15668305--15668596 Score: 383
Period size: 158 Copynumber: 1.8 Consensus size: 158
15668295 TAGCACACTG
* * * *
15668305 TGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGATCAGTTGAACGCCCACACGC
1 TGGGGGACCGGGCCAATCCCCGACTTGCGCATTCTACCTCTCCGATCAGTTGAACACCCACACGC
* * * * * **
15668370 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGG
66 CCGTTTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCAGATCAGACCAAGG
15668435 GTTGCGATAGTAGGATCAGTAGCATGCA
131 GTTGCGATAGTAGGATCAGTAGCATGCA
* * * *
15668463 TGGGGGACCGGGCCAATCCTCGACTTGCGCATTGTACCTCTTCGATCGGTTGAGA-ACCCACACG
1 TGGGGGACCGGGCCAATCCCCGACTTGCGCATTCTACCTCTCCGATCAGTTGA-ACACCCACACG
* *
15668527 CCCGTTTCATGGGTTAGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCTAG-TCAGACCA
65 CCCGTTTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCCA-GTCTAAGACC-AGATCAGACCA
15668590 AGGGTTG
128 AGGGTTG
15668597 TGGCAGCGGG
Statistics
Matches: 114, Mismatches: 17, Indels: 6
0.83 0.12 0.04
Matches are distributed among these distances:
157 3 0.03
158 109 0.96
159 2 0.02
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (158 bp):
TGGGGGACCGGGCCAATCCCCGACTTGCGCATTCTACCTCTCCGATCAGTTGAACACCCACACGC
CCGTTTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCAGATCAGACCAAGG
GTTGCGATAGTAGGATCAGTAGCATGCA
Found at i:15668918 original size:26 final size:26
Alignment explanation
Indices: 15668889--15668939 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15668879 TGACTTAGGC
15668889 ATACAGAGTTCATCCCCAGTCTAAGT
1 ATACAGAGTTCATCCCCAGTCTAAGT
* *
15668915 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATCCCCAGTCTAAG
15668940 ATCACACCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATCCCCAGTCTAAGT
Found at i:15669119 original size:26 final size:26
Alignment explanation
Indices: 15669080--15669132 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15669070 GTTGACTTAG
15669080 GCATACGAACTTCATCCCCAGTCTAA
1 GCATACGAACTTCATCCCCAGTCTAA
* *
15669106 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAACTTCATCCCCAGTCTAA
15669132 G
1 G
15669133 ATCAGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.30, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAACTTCATCCCCAGTCTAA
Found at i:15669454 original size:26 final size:26
Alignment explanation
Indices: 15669424--15669474 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15669414 TTGGCTTAGG
15669424 CATACGGAGTTCATT-CCATGTCTAAC
1 CATACGGAGTTCATTCCCA-GTCTAAC
15669450 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
15669475 GAGTTTGACC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAC
Found at i:15670696 original size:26 final size:26
Alignment explanation
Indices: 15670647--15670699 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15670637 GTTGGCTTAG
***
15670647 GCATACGGAGTTCATTCTGTGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
*
15670673 GCATATGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
15670699 G
1 G
15670700 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:15671195 original size:25 final size:26
Alignment explanation
Indices: 15671161--15671213 Score: 81
Period size: 25 Copynumber: 2.1 Consensus size: 26
15671151 GTTGACTTAG
15671161 GCATACGGAGTTCATCCCA-GTCTAA
1 GCATACGGAGTTCATCCCATGTCTAA
* *
15671186 GCATGCGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATCCCATGTCTAA
15671212 GC
1 GC
15671214 CCCAGTCGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 17 0.68
26 8 0.32
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCATGTCTAA
Found at i:15671345 original size:343 final size:343
Alignment explanation
Indices: 15670898--15671530 Score: 837
Period size: 342 Copynumber: 1.8 Consensus size: 343
15670888 TTGCGACAGT
* * * * * *
15670898 AGGATAGGCACCACGCAAGGGGGATCGGGTCGATCCCCGGTTTACACATTCTGCCTTTCCGGCTG
1 AGGATAGGCACCACGCAAGGGGGACCGGGCCGATCCCCGGTTTACACATTCTACCTCTCCGCCAG
*
15670963 ACTGAGTACCCGCATGCCCATTTCTTGGGTTGACTTAGGCATAGGGAGTTCATTACATGTCTAAG
66 ACTGAGCACCCGCATGCCCATTTCTTGGGTTGACTTAGGCATAGGGAGTTCATTACATGTCTAAG
* * *
15671028 CCCCAGCCGGGGGAGAGGGTTGTGGCAGCGAGACCGATAGCACGCAGAGGGAGACCGAACT-GAT
131 CCCCA-ACGGGAGAGAGGGTTGTGGCAACGAGACCGATAGCACGCAGAGGGAGACC-AACTCGAT
* * *
15671092 CCTCAACTTATGCATTCTACCTCTCCGACCA-GCTGAACGCCCACACGCTCATTTCGTGGGTTGA
194 CCCCAACTTATACATTCTACCTCTCCGA-CAGGCTGAACGCCCACACGCCCATTTCGTGGGTTGA
15671156 CTTAGGCATACGGAGTTCATCCCA-GTCTAAGCATGCGGAGTTCATTCCATGTCTAAGCCCCAGT
258 CTTAGGCATACGGAGTTCATCCCATGTCTAAGCATGCGGAGTTCATTCCATGTCTAAGCCCCAGT
15671220 CGAATCGAGGGTTGTGGCAGC
323 CGAATCGAGGGTTGTGGCAGC
* * *
15671241 AGGATCGGCAGCACGCAAGGGGGACCGGGCCGATCCCCGGCTTT-TACATTCTACCTCTCCGACC
1 AGGATAGGCACCACGCAAGGGGGACCGGGCCGATCCCCGG-TTTACACATTCTACCTCTCCG-CC
* * * * *
15671305 AG-CTGAGCGCCCGCATGCCCGTTT-TGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCGTGTCT
64 AGACTGAGCACCCGCATGCCCATTTCT-TGGGTTGACTTAGGCATAGGGAGTTCATTACATGTCT
* * * * * **
15671368 AAGCCCTAACTGGATAGAGGGTTGTGGCAACGGGACCGATAGCACGTAGAGGGAGACCAGGTCGA
128 AAGCCCCAACGGGAGAGAGGGTTGTGGCAACGAGACCGATAGCACGCAGAGGGAGACCAACTCGA
* * * * ** *
15671433 TCCCCAGCTTATACATTTTGCCTCTCCGATAGGCTGAACGCCTGCACGCCCATTTCGTGGGTTGG
193 TCCCCAACTTATACATTCTACCTCTCCGACAGGCTGAACGCCCACACGCCCATTTCGTGGGTTGA
* *
15671498 CTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
258 CTTAGGCATACGGAGTTCATCCCATGTCTAAGC
15671531 CCCAGTCGGA
Statistics
Matches: 247, Mismatches: 37, Indels: 12
0.83 0.12 0.04
Matches are distributed among these distances:
341 3 0.01
342 121 0.49
343 118 0.48
344 5 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (343 bp):
AGGATAGGCACCACGCAAGGGGGACCGGGCCGATCCCCGGTTTACACATTCTACCTCTCCGCCAG
ACTGAGCACCCGCATGCCCATTTCTTGGGTTGACTTAGGCATAGGGAGTTCATTACATGTCTAAG
CCCCAACGGGAGAGAGGGTTGTGGCAACGAGACCGATAGCACGCAGAGGGAGACCAACTCGATCC
CCAACTTATACATTCTACCTCTCCGACAGGCTGAACGCCCACACGCCCATTTCGTGGGTTGACTT
AGGCATACGGAGTTCATCCCATGTCTAAGCATGCGGAGTTCATTCCATGTCTAAGCCCCAGTCGA
ATCGAGGGTTGTGGCAGC
Done.