Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19866354
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 74000 characters in sequence are not A, C, G, or T
File 67 of 100
Found at i:15671502 original size:159 final size:159
Alignment explanation
Indices: 15671192--15672007 Score: 608
Period size: 159 Copynumber: 5.1 Consensus size: 159
15671182 CTAAGCATGC
* * * * *
15671192 GGAGTTCATTCCATGTCTAAGCCCCAGTCGAATCGAGGGTTGTGGCAGCAGGATCGGCAGCACGC
1 GGAGTTCATTCCATGTCTAAGCCCAAGTCGGATAGAGGGTTGTGGCAGCAGGACCGACAGCACGC
* *
15671257 A-AGGGGGACCGGGCCGATCCCCGGCTTTTACATTCTACCTCTCCGACCA-GCTGAGCGCCCGCA
66 AGAGGGGGACCGGGCCGATCCCCGGCTTATACATTTTACCTCTCCGA-CAGGCTGAGCGCCCGCA
* *
15671320 TGCCCGTTTTGTGGGTTGGCTTAGGCATAG
130 CGCCCGTTTCGTGGGTTGGCTTAGGCATAG
* * * * *
15671350 GGAGTTCATTCCGTGTCTAAGCCCTAACT-GGATAGAGGGTTGTGGCAACGGGACCGATAGCACG
1 GGAGTTCATTCCATGTCTAAGCCC-AAGTCGGATAGAGGGTTGTGGCAGCAGGACCGACAGCACG
* * * * * * * * *
15671414 TAGAGGGAGACCAGGTCGATCCCCAGCTTATACATTTTGCCTCTCCGATAGGCTGAACGCCTGCA
65 CAGAGGGGGACCGGGCCGATCCCCGGCTTATACATTTTACCTCTCCGACAGGCTGAGCGCCCGCA
*
15671479 CGCCCATTTCGTGGGTTGGCTTAGGCATAG
130 CGCCCGTTTCGTGGGTTGGCTTAGGCATAG
* *
15671509 GGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTA-AGGGTTGTGGCAGCCGGACCGACAGCACG
1 GGAGTTCATTCCATGTCTAAGCCCAAGTCGGA-TAGAGGGTTGTGGCAGCAGGACCGACAGCACG
** * ** * * ** * *
15671573 CAGAGGGGGTTCGGGCCGATCCCCGGTTTACGCATTTTACCTCTCTGACCGTTTGAGCACCCACA
65 CAGAGGGGGACCGGGCCGATCCCCGGCTTATACATTTTACCTCTCCGACAGGCTGAGCGCCCGCA
15671638 CGCCCGTTTCGTGGGTTGGCTTAGGCATAG
130 CGCCCGTTTCGTGGGTTGGCTTAGGCATAG
* * * ** * * *
15671668 GGAGTTCATTCCATGTTTAAGCCCTAGCCGGACCGATGGTTGTTGC--CATGGGACTGACAGCAC
1 GGAGTTCATTCCATGTCTAAGCCCAAGTCGGATAGAGGGTTGTGGCAGCA--GGACCGACAGCAC
* * * ** * * ** * * * ** * *
15671731 TCAAAGAGGGATTGGGTCGATCCTCGGCTTACGCATTATGCCTTTTTGGCCA-GCTCAGCGCCCG
64 GCAGAGGGGGACCGGGCCGATCCCCGGCTTATACATTTTACC-TCTCCGACAGGCTGAGCGCCCG
* * * * *
15671795 AACGCTCGTTTCATGGGTTGACTTAGGCATAC
128 CACGCCCGTTTCGTGGGTTGGCTTAGGCATAG
* ** ** * * * **
15671827 GGAGTTTATTCCCA-GTCTAAGATC-AGATCGGACCGAGGGTTATGGTAGCAGGATCGATGGCAC
1 GGAGTTCATT-CCATGTCTAAGCCCAAG-TCGGATAGAGGGTTGTGGCAGCAGGACCGACAGCAC
* * * * * ** ** * ** *
15671890 ACA-AGGGGGAATCGGGTCGGTCCCTGGCTTACGCATTTTACCTCTCCGGTAGACTGAATGCCAG
64 GCAGAGGGGG-ACCGGGCCGATCCCCGGCTTATACATTTTACCTCTCCGACAGGCTGAGCGCCCG
* ** * * *
15671954 CACGCTCGTTTTATGGTTTGGCTTAGGCAAAT
128 CACGCCCGTTTCGTGGGTTGGCTTAGGCATAG
**
15671986 GGAGTTCATTCCACATCTAAGC
1 GGAGTTCATTCCATGTCTAAGC
15672008 ATACGGAGTT
Statistics
Matches: 517, Mismatches: 125, Indels: 31
0.77 0.19 0.05
Matches are distributed among these distances:
157 1 0.00
158 69 0.13
159 436 0.84
160 9 0.02
161 2 0.00
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (159 bp):
GGAGTTCATTCCATGTCTAAGCCCAAGTCGGATAGAGGGTTGTGGCAGCAGGACCGACAGCACGC
AGAGGGGGACCGGGCCGATCCCCGGCTTATACATTTTACCTCTCCGACAGGCTGAGCGCCCGCAC
GCCCGTTTCGTGGGTTGGCTTAGGCATAG
Found at i:15671814 original size:318 final size:317
Alignment explanation
Indices: 15671186--15671937 Score: 775
Period size: 318 Copynumber: 2.4 Consensus size: 317
15671176 CCCAGTCTAA
* * *
15671186 GCATGCGGAGTTCATTCCATGTCTAAGCCCCAGTC-GAATCGAGGGTTGTGGCAGCAGGATCGGC
1 GCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACT-GAGGGTTGTGGCAGCAGGATCGAC
* *
15671250 AGCACGCAAGGGGGACCGGGCCGATCCCCGGCTTTTA--CATTCTACCTCTCCGACCAGCTGAGC
65 AGCACGCAAGGGGGATCGGGCCGATCCCCGG--TTTACGCATTTTACCTCTCCGACCAGCTGAGC
* * * * *
15671313 GCCCGCATGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCGTGTCTAAGCCCTAAC
128 ACCCACACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAAC
* * * *
15671378 TGGATAGAGGGTTGTGGCAACGGGACCGATAGCACGTAGAGGGAGACCAGGTCGATCCCCAGCTT
193 CGGACAGAGGGTTGTGGCAACGGGACCGACAGCACGTAAAGGGAGACCAGGTCGATCCCCAGCTT
* * * * * * * *
15671443 ATACATTTTGCCTCTCCGATAGGCTGAACGCCTGCACGCCCATTTCGTGGGTTGGCTTAG
258 ACACATTATGCCTCTCCGACAGGCTCAACGCCCGAACGCCCATTTCATGGGTTGACTTAG
* * * *
15671503 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTAAGGGTTGTGGCAGCCGGACCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGCAGCAGGATCGACA
* * *
15671568 GCACGCAGAGGGGGTTCGGGCCGATCCCCGGTTTACGCATTTTACCTCTCTGACC-GTTTGAGCA
66 GCACGCA-AGGGGGATCGGGCCGATCCCCGGTTTACGCATTTTACCTCTCCGACCAG-CTGAGCA
* *
15671632 CCCACACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTTTAAGCCCTAGCC
129 CCCACACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAACC
* * * * * * *** * *
15671697 GGACCGATGGTTGTTGCCATGGGACTGACAGCAC-TCAAAGAGG-GATTGGGTCGATCCTCGGCT
194 GGACAGAGGGTTGTGGCAACGGGACCGACAGCACGT-AAAG-GGAGACCAGGTCGATCCCCAGCT
* * ** * * * *
15671760 TACGCATTATGCCTTTTTGGCCA-GCTCAGCGCCCGAACGCTCGTTTCATGGGTTGACTTAG
257 TACACATTATGCC-TCTCCGACAGGCTCAACGCCCGAACGCCCATTTCATGGGTTGACTTAG
* ** * * *
15671821 GCATACGGAGTTTATTCCCA-GTCTAAG-ATCAGATCGGACCGAGGGTTATGGTAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCCAG-TCGGACTGAGGGTTGTGGCAGCAGGATCGA
** * * * * *
15671884 TGGCACACAAGGGGGAATCGGGTCGGTCCCTGGCTTACGCATTTTACCTCTCCG
64 CAGCACGCAAGGGGG-ATCGGGCCGATCCCCGGTTTACGCATTTTACCTCTCCG
15671938 GTAGACTGAA
Statistics
Matches: 355, Mismatches: 69, Indels: 21
0.80 0.16 0.05
Matches are distributed among these distances:
316 4 0.01
317 72 0.20
318 270 0.76
319 9 0.03
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (317 bp):
GCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGCAGCAGGATCGACA
GCACGCAAGGGGGATCGGGCCGATCCCCGGTTTACGCATTTTACCTCTCCGACCAGCTGAGCACC
CACACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAACCGG
ACAGAGGGTTGTGGCAACGGGACCGACAGCACGTAAAGGGAGACCAGGTCGATCCCCAGCTTACA
CATTATGCCTCTCCGACAGGCTCAACGCCCGAACGCCCATTTCATGGGTTGACTTAG
Found at i:15672382 original size:159 final size:159
Alignment explanation
Indices: 15672217--15672574 Score: 438
Period size: 159 Copynumber: 2.3 Consensus size: 159
15672207 CAGCCGGACT
* *
15672217 GAGGGTTGTGGCAGTGAGACCGATAGCACGCAGAAGGGGACCAG-GCTGATCCCCGGCTTACGCA
1 GAGGGTTGTGGCAGTGAGACCGACAGCACGCAGAAGGGGA-CAGAGCTGATCCCCGACTTACGCA
* * ** *
15672281 TTATGCCTCTCTGGTTGGCTCAACGCCCGAACGCTTGTTTCATGGGTTGACTTAGGCATACGGAG
65 TTATGCCTCTCCGGCTGGCTCAACGCCCGAACGCTCATTTCATGGGTTGACTTAGGCATACGAAG
** *
15672346 TTCATTTTCAATCTTAGATCGGACATGATC
130 TTCATTCCCAATCTAAGATCGGACATGATC
* * * *
15672376 GAGGGTTGTGGCAGTGGGACCGACAGCACGCAGAAGGGGACTGAGCTGATCCTCGACTTACGTAT
1 GAGGGTTGTGGCAGTGAGACCGACAGCACGCAGAAGGGGACAGAGCTGATCCCCGACTTACGCAT
* * * *
15672441 TATGCCTCTCCGGCTGGCTTAGCGCCCGCACGGTCATTTCATGGGTTGACTTAGGCATACGAAGT
66 TATGCCTCTCCGGCTGGCTCAACGCCCGAACGCTCATTTCATGGGTTGACTTAGGCATACGAAGT
* *
15672506 TCCTTCCCAATCTAAGATCGGGC-TAGA-C
131 TCATTCCCAATCTAAGATCGGACAT-GATC
* * *
15672534 TGAGGGTTTTGACAGT-AGGATCGACAGCACGCAG-AGGGGAC
1 -GAGGGTTGTGGCAGTGA-GACCGACAGCACGCAGAAGGGGAC
15672575 TGGGTCGATC
Statistics
Matches: 171, Mismatches: 24, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
158 11 0.06
159 160 0.94
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.24
Consensus pattern (159 bp):
GAGGGTTGTGGCAGTGAGACCGACAGCACGCAGAAGGGGACAGAGCTGATCCCCGACTTACGCAT
TATGCCTCTCCGGCTGGCTCAACGCCCGAACGCTCATTTCATGGGTTGACTTAGGCATACGAAGT
TCATTCCCAATCTAAGATCGGACATGATC
Found at i:15672689 original size:26 final size:26
Alignment explanation
Indices: 15672653--15672705 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15672643 GTTGGCTTAG
*
15672653 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
15672679 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15672705 G
1 G
15672706 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15673180 original size:343 final size:343
Alignment explanation
Indices: 15672813--15673550 Score: 903
Period size: 343 Copynumber: 2.2 Consensus size: 343
15672803 GAGTGTCCAC
*
15672813 ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCA
1 ACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCA
* * * *
15672878 TTCCCAGTCCAAGATTAGA-CCGTTCCGAGAGTTACGACAGGAGGATCGACCA-CACACAGGGGG
66 TTCCCAGTCCAAGATCAGATCCGAT-CGAGAGTTACAACAGCAGGATCGA-CAGCACACAGGGGG
**
15672941 GACTGAGCCGATCCCCAGCTTACGCATTCTACCTCT-CTGGCTAGCTGA-TCGCCAGCACGCCCG
129 GACCAAGCCGATCCCCAGCTTACGCATTCTACCTCTCCTGGC-AGCTGAGT-GCCAGCACGCCCG
* * * *
15673004 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCC-AGACCGAGGGT
192 TTTCATGGGTTGGCTTAGGCACACGGAGTTCATTCCACGTCTAAGCCCCAACCGA-ACCGAGGGT
* * * *
15673068 TGTGGCAGCGGGACC-AGTAGCATGCAAAGAAGGACCGGGCCGATCCCCGGCTTGCGCATTCTGC
256 TGTGGCAGCGAGACCGA-CAGCACGCAAAGAAGGACCGGGCCGATCCCCGGCTTGCGCATTATGC
* *
15673132 CTCTCCGACCGACTGAGCACCCGT
320 CTCTCCGACCGACTCAGCACCCGA
* *
15673156 ACGCTCATTTCATGGGTTGACTTAGGCTTACGGAGTTCATCCCCAGTCTAAGCATACGGCGTTCA
1 ACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCA
* * * *
15673221 TTCCTAGTCTAAGATCAGATCGGATCGAGGGTTACAACAGCAGGATCGACAGCACACAGGGGGGA
66 TTCCCAGTCCAAGATCAGATCCGATCGAGAGTTACAACAGCAGGATCGACAGCACACAGGGGGGA
* * * * * * * * *
15673286 CCAAGCTGATCCGCGGCTTGCGCATTCTGCCTCTCCTGTCGGCTGAGTGCCCGCATGCCCGTTTC
131 CCAAGCCGATCCCCAGCTTACGCATTCTACCTCTCCTGGCAGCTGAGTGCCAGCACGCCCGTTTC
* *
15673351 ATGGGTTGGCTTAGGCACAGGGAGTTCATTCCACGTCTAAGCCCCAATCGAACCGAGGGTTGTGG
196 ATGGGTTGGCTTAGGCACACGGAGTTCATTCCACGTCTAAGCCCCAACCGAACCGAGGGTTGTGG
* * * ** * * * *
15673416 TAGCGAGACCGACAGTACGCAGAGGGGGACGGGGCCGATCCCCGGCTTGTGCATTATGCTTCTTC
261 CAGCGAGACCGACAGCACGCAAAGAAGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCC
* ** ** *
15673481 GATCGGTTCAGTGCCTGA
326 GACCGACTCAGCACCCGA
* * * *
15673499 ACGCTCATTTCGTGGGGTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAG
1 ACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
15673551 ATCGAATCGG
Statistics
Matches: 335, Mismatches: 54, Indels: 12
0.84 0.13 0.03
Matches are distributed among these distances:
342 2 0.01
343 323 0.96
344 10 0.03
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (343 bp):
ACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCA
TTCCCAGTCCAAGATCAGATCCGATCGAGAGTTACAACAGCAGGATCGACAGCACACAGGGGGGA
CCAAGCCGATCCCCAGCTTACGCATTCTACCTCTCCTGGCAGCTGAGTGCCAGCACGCCCGTTTC
ATGGGTTGGCTTAGGCACACGGAGTTCATTCCACGTCTAAGCCCCAACCGAACCGAGGGTTGTGG
CAGCGAGACCGACAGCACGCAAAGAAGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCC
GACCGACTCAGCACCCGA
Found at i:15673214 original size:26 final size:26
Alignment explanation
Indices: 15673184--15673233 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
15673174 GACTTAGGCT
15673184 TACGGAGTTCATCCCCAGTCTAAGCA
1 TACGGAGTTCATCCCCAGTCTAAGCA
* * *
15673210 TACGGCGTTCATTCCTAGTCTAAG
1 TACGGAGTTCATCCCCAGTCTAAG
15673234 ATCAGATCGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAGTCTAAGCA
Found at i:15673705 original size:157 final size:158
Alignment explanation
Indices: 15673207--15673792 Score: 484
Period size: 157 Copynumber: 3.7 Consensus size: 158
15673197 CCCAGTCTAA
* * * **** *
15673207 GCATACGGCGTTCATTCC-TAGTCTAAGATC-AGATCGGATCGAGGGTTACAACAGCAGGATCGA
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCGA-ATCGAACCGAGGGTTGTGGCAGCAAGATCGA
* ** * * * *
15673270 CAGCACACAGGGGGGACCAAGCTGATCCGCGGCTTGCGCATTCTGCCTCTCCTGTCGGCTGAGTG
64 CAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGAGCATTCTGCCTCTCCTGTCGGTTGAGTG
* * * *
15673335 CCCGCATGCCCGTTTCATGGGTTGGCTTAG
129 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * ** * * * *
15673365 GCACAGGGAGTTCATTCCACGTCTAAGCCCCAATCGAACCGAGGGTTGTGGTAGCGAGACCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGATCGAATCGAACCGAGGGTTGTGGCAGCAAGATCGACA
* * * * * * *
15673430 GTACGCAGAGGGGGACGGGGCCGATCCCCGGCTTGTGCATTATGCTTCTTC-GATCGGTTCAGTG
66 GCACGCAG-GGGGGACCGGGCCGATCCCCGGCTTGAGCATTCTGCCTCTCCTG-TCGGTTGAGTG
* * * *
15673494 CCTGAACGCTCATTTCGTGGGGTGACTTAG
129 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
* *
15673524 GCATATGGAGTTCATTCCCA-GTCTAAGATCGAATCGGACCGAGGGTTGTGGCAGCAAGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGAATCGAACCGAGGGTTGTGGCAGCAAGATCGAC
* * * * *
15673588 AGCACGTAGGAGGGACCGGGCCGA-CCTCGACTTGAGCATTCTGCCTCTCCTG-CTGGTTGAGCG
65 AGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGAGCATTCTGCCTCTCCTGTC-GGTTGAGTG
* * *
15673651 CCCGCACACTCATTTTGTGGGTTGGCATAG
129 CCCGCACGCTCATTTCGTGGGTTGGCTTAG
* * * ** * * **
15673681 GCATACGGATTTCATTCCATGTCTAAGATCGGATCGAACTGAGGGTTGCAGCAGCAGGATAGGTA
1 GCATACGGAGTTCATTCCATGTCTAAGATCGAATCGAACCGAGGGTTGTGGCAGCAAGATCGACA
* * * * ** *
15673746 GCAGGTAGGGGGGGCCGGGTCGATCCCCTACTTGCGCATT-TGCCTCT
66 GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGAGCATTCTGCCTCT
15673793 TCGATCGGCA
Statistics
Matches: 336, Mismatches: 83, Indels: 19
0.77 0.19 0.04
Matches are distributed among these distances:
156 4 0.01
157 126 0.38
158 80 0.24
159 123 0.37
160 3 0.01
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGAATCGAACCGAGGGTTGTGGCAGCAAGATCGACA
GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGAGCATTCTGCCTCTCCTGTCGGTTGAGTGCC
CGCACGCTCATTTCGTGGGTTGGCTTAG
Found at i:15673924 original size:26 final size:26
Alignment explanation
Indices: 15673855--15673917 Score: 126
Period size: 26 Copynumber: 2.4 Consensus size: 26
15673845 ACTTAGGCAT
15673855 ACGGAGTTCATCCCCAGTTTAAGCAC
1 ACGGAGTTCATCCCCAGTTTAAGCAC
15673881 ACGGAGTTCATCCCCAGTTTAAGCAC
1 ACGGAGTTCATCCCCAGTTTAAGCAC
15673907 ACGGAGTTCAT
1 ACGGAGTTCAT
15673918 TCTCAGTCTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 37 1.00
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.24
Consensus pattern (26 bp):
ACGGAGTTCATCCCCAGTTTAAGCAC
Found at i:15674660 original size:26 final size:26
Alignment explanation
Indices: 15674582--15674648 Score: 134
Period size: 26 Copynumber: 2.6 Consensus size: 26
15674572 GTTGACTTAG
15674582 GCATATGGAGTTCATCTCCAGTTTAA
1 GCATATGGAGTTCATCTCCAGTTTAA
15674608 GCATATGGAGTTCATCTCCAGTTTAA
1 GCATATGGAGTTCATCTCCAGTTTAA
15674634 GCATATGGAGTTCAT
1 GCATATGGAGTTCAT
15674649 TCCTAGTCTA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.34
Consensus pattern (26 bp):
GCATATGGAGTTCATCTCCAGTTTAA
Found at i:15675092 original size:26 final size:26
Alignment explanation
Indices: 15675056--15675108 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15675046 GATGACTTAG
15675056 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
*
15675082 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15675108 G
1 G
15675109 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15675557 original size:158 final size:157
Alignment explanation
Indices: 15675082--15675614 Score: 482
Period size: 158 Copynumber: 3.4 Consensus size: 157
15675072 CCTAGTCTAA
* * *
15675082 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTGCGATACCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCG-TAGCAGGATCGACA
** * * * * * *
15675147 GCACGCAGGGGGGACTAGGCCGATGCCCGACTTGCGCATTCTGCCTTTCCGGCTGGCTGAGCG-T
65 GCACGCAGGGGGGACCGGGCTGATCCCCGACTTGCGCATTCTGCCTCTCTGACCGGCTGAGCGCT
* * *
15675211 CGGCATGC-CTGTTTTATGGGTTGGCTTAG
130 C-GAACGCTC-GTTTCATGGGTTGGCTTAG
* ** * * * * * * *
15675240 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCA-ATCGGATCGAGGGTTGTGGCAGCGGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGAACCGAGGGTTG-CGTAGCAGGATCGA
* * * * * *
15675303 CAGCACCCGGAGGGGGACCGGGCCT-ATCCCCGACTTGCGCATTATGTCGCTCTGACCGGCTCAG
63 CAGCACGCAG-GGGGGACCGGG-CTGATCCCCGACTTGCGCATTCTGCCTCTCTGACCGGCTGAG
* * **
15675367 CACCCGAACGCTCGTTTCATGGGTTGAATTAG
126 CGCTCGAACGCTCGTTTCATGGGTTGGCTTAG
* *
15675399 GCATACGGTGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCAGTAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGC-GTAGCAGGATCGACA
* * * * **
15675464 GTACGCAGGGGGGACCGGGCTGATCCCCGGCTTGCGCATTCTACCTCTCTGATCGATTGAGCGCT
65 GCACGCAGGGGGGACCGGGCTGATCCCCGACTTGCGCATTCTGCCTCTCTGACCGGCTGAGCGCT
* * **
15675529 CGTACGCTCGTTCCATATGTTGGCTTAG
130 CGAACGCTCGTTTCATGGGTTGGCTTAG
* * * * *
15675557 GCATACGGAGTTCATTCCCAGTCTATGATTAGACTGGACCGAGGGTTGTGATAGCAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCG-TAGCAGG
15675615 CCAATAGTAG
Statistics
Matches: 290, Mismatches: 73, Indels: 24
0.75 0.19 0.06
Matches are distributed among these distances:
157 6 0.02
158 165 0.57
159 113 0.39
160 6 0.02
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGTAGCAGGATCGACAG
CACGCAGGGGGGACCGGGCTGATCCCCGACTTGCGCATTCTGCCTCTCTGACCGGCTGAGCGCTC
GAACGCTCGTTTCATGGGTTGGCTTAG
Found at i:15675755 original size:26 final size:26
Alignment explanation
Indices: 15675726--15675777 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
15675716 GTTGACTTAG
**
15675726 GCATACGAAGTTTATCCCCAGTCTAA
1 GCATACGAAGTCCATCCCCAGTCTAA
* *
15675752 GCATACGGAGTCCATTCCCAGTCTAA
1 GCATACGAAGTCCATCCCCAGTCTAA
15675778 AATCGGATCG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTCCATCCCCAGTCTAA
Found at i:15676056 original size:159 final size:160
Alignment explanation
Indices: 15675891--15676256 Score: 393
Period size: 159 Copynumber: 2.3 Consensus size: 160
15675881 TTGCATGCTT
* * * *
15675891 GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCAGACCAAAGG
1 GTTTCGTGAGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCAAAGG
* ** * * * *
15675955 TTGTGCCAATGGGACCGGCAGCACGTAGAGG-GGGATTGGGCCGATACCT-GGCTTGCGCATTAT
66 TTGCGCCAACAGGACCGACAGCACGGA-AGGAGGGATCGGGCCGAT-CCTCGGCTTACGCATTAT
* * *
15676018 GCCTCTCTGATCGACTCAGTGCC-ATAACGCTC
129 ACCTCTCCGACCGACTCAGTGCCTATAA-GCTC
* * * * *
15676050 GTTTCGTGAGTTGACTTAGGGAAACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCAAGG
1 GTTTCGTGAGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGACCAAAG
* * * *
15676113 GTTGCGGCAACAGGATCGACAGCACGGAAGGAGGGATCGGGCTGATCCTCGGCTTACGCATTCTA
65 GTTGCGCCAACAGGACCGACAGCACGGAAGGAGGGATCGGGCCGATCCTCGGCTTACGCATTATA
* * *
15676178 CCTCTCCGACCGGCTGAGTGCCTGTAAGCTC
130 CCTCTCCGACCGACTCAGTGCCTATAAGCTC
* * *
15676209 ATTTCATGAGTTGGGTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 GTTTCGTGAGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
15676257 TATGAAGTTC
Statistics
Matches: 168, Mismatches: 32, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
158 12 0.07
159 149 0.89
160 7 0.04
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.24
Consensus pattern (160 bp):
GTTTCGTGAGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCAAAGG
TTGCGCCAACAGGACCGACAGCACGGAAGGAGGGATCGGGCCGATCCTCGGCTTACGCATTATAC
CTCTCCGACCGACTCAGTGCCTATAAGCTC
Found at i:15676258 original size:26 final size:26
Alignment explanation
Indices: 15676228--15676280 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15676218 GTTGGGTTAG
*
15676228 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
15676254 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15676280 G
1 G
15676281 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15676427 original size:184 final size:185
Alignment explanation
Indices: 15676077--15676439 Score: 453
Period size: 184 Copynumber: 2.0 Consensus size: 185
15676067 AGGGAAACGG
* * *
15676077 AGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAACAGGATCGACAGCACGGAA
1 AGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGGCAACAGGATCAACAGCACGAAA
* * * * * *
15676142 GGAGGGATCGGGCTGATCCTCGGCTTACGCATTCTACCTCTCCGACCGGCTGAGTGCCTGTAAGC
66 GGAGGGATCGGGCTGATCCCCGACTTACACATTCTACCTCTCCGACCGACTGAGTGCCCGCAAGC
* * *
15676207 TCATTTCATGAGTTGGGTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGA
131 CCATTTCATGAGTTGGCTTAGCCATACGGAGTTCATTCCATGTCTAAGCATATGA
* * * ** *
15676262 AGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACGGCAGTAGGATTAACAGCACGAAA
1 AGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGGCAACAGGATCAACAGCACGAAA
* * * *
15676327 GG-GGGATCGGG-TCGATCCCCGACTTGCACATTCTGCCTCTCC-AGTCGACTGAGTGCCCGCAC
66 GGAGGGATCGGGCT-GATCCCCGACTTACACATTCTACCTCTCCGA-CCGACTGAGTGCCCGCAA
* * * *
15676389 GCCCGTTTCGTGGGTTGGCTTAGCCATAGGGAGTTCATTCCATGTCTAAGC
129 GCCCATTTCATGAGTTGGCTTAGCCATACGGAGTTCATTCCATGTCTAAGC
15676440 CCCAGCCGAA
Statistics
Matches: 150, Mismatches: 26, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
183 2 0.01
184 90 0.60
185 58 0.39
ACGTcount: A:0.23, C:0.26, G:0.28, T:0.24
Consensus pattern (185 bp):
AGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGGCAACAGGATCAACAGCACGAAA
GGAGGGATCGGGCTGATCCCCGACTTACACATTCTACCTCTCCGACCGACTGAGTGCCCGCAAGC
CCATTTCATGAGTTGGCTTAGCCATACGGAGTTCATTCCATGTCTAAGCATATGA
Found at i:15677081 original size:26 final size:26
Alignment explanation
Indices: 15677045--15677094 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
15677035 TTGACTTAGC
15677045 CATACAGAGTTCA-TCCCTAGTCTAAG
1 CATACAGAGTTCATTCCC-AGTCTAAG
15677071 CATACAGAGTTCATTCCCAGTCTA
1 CATACAGAGTTCATTCCCAGTCTA
15677095 TGATCGGACT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAG
Found at i:15677522 original size:135 final size:135
Alignment explanation
Indices: 15677280--15677535 Score: 336
Period size: 135 Copynumber: 1.9 Consensus size: 135
15677270 TGTGGTAGCG
* * *
15677280 GGATTGGCAGCACGCAGAGGGGGACTGGGTCGATCCCCAGCTTGCCCATTATACCTTTCTGATCG
1 GGATTGACAGCACGCAGAGGGGGACTGGGTCGATCCCCAGCTTGCCCATTATACCTTCCAGATCG
*
15677345 GCTCAGCGCCTGAACGCTCATTTCATGGGATGACTTAGGCATACGGAGTTCATTCCCAGTTTAAG
66 GCTCAGCGCCCGAACGCTCATTTCATGGGATGACTTAGGCATACGGAGTTCATTCCCAGTTTAAG
15677410 GAGCA
131 GAGCA
* * * * *
15677415 GGATTGACAGCACGCATG-GGGGGACTTGGTCGGTCCCCAGCTTGCGCATTCTGCCTCTCCAG-T
1 GGATTGACAGCACGCA-GAGGGGGACTGGGTCGATCCCCAGCTTGCCCATTATACCT-TCCAGAT
* * * * * * *
15677478 CGGTTGAGTGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCC
64 CGGCTCAGCGCCCGAACGCTCATTTCATGGGATGACTTAGGCATACGGAGTTCATTCC
15677536 ATGTCTAAGC
Statistics
Matches: 103, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
135 99 0.96
136 4 0.04
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.26
Consensus pattern (135 bp):
GGATTGACAGCACGCAGAGGGGGACTGGGTCGATCCCCAGCTTGCCCATTATACCTTCCAGATCG
GCTCAGCGCCCGAACGCTCATTTCATGGGATGACTTAGGCATACGGAGTTCATTCCCAGTTTAAG
GAGCA
Found at i:15677548 original size:26 final size:26
Alignment explanation
Indices: 15677518--15677570 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15677508 GTTGGCTTAG
15677518 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15677544 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15677570 G
1 G
15677571 ATTTGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15678821 original size:26 final size:26
Alignment explanation
Indices: 15678792--15678844 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
15678782 GTTGACTTAG
* *
15678792 GCATACGGAGTTTA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
*
15678818 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15678844 G
1 G
15678845 ATTAGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15679187 original size:26 final size:26
Alignment explanation
Indices: 15679135--15679187 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15679125 GTTGGCTTAG
*
15679135 GCATACGGAGTTCATTCCATGTTTAA
1 GCATACGGAGTTCATTCCATGTCTAA
15679161 GCATACGGAGTTCATTCC-TAGTCTAA
1 GCATACGGAGTTCATTCCAT-GTCTAA
15679187 G
1 G
15679188 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:15680264 original size:26 final size:26
Alignment explanation
Indices: 15680228--15680280 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15680218 GTTGGCTTAG
15680228 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
15680254 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15680280 G
1 G
15680281 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15680455 original size:26 final size:26
Alignment explanation
Indices: 15680425--15680477 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15680415 GTTGACTTAG
15680425 GCATACGGAGTTCA-TCCTCAGTCTAA
1 GCATACGGAGTTCATTCC-CAGTCTAA
15680451 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15680477 G
1 G
15680478 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15680957 original size:26 final size:26
Alignment explanation
Indices: 15680927--15680979 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15680917 GTTGGCTCAG
15680927 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
*
15680953 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
15680979 G
1 G
15680980 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:15680999 original size:699 final size:697
Alignment explanation
Indices: 15679700--15681396 Score: 1887
Period size: 699 Copynumber: 2.4 Consensus size: 697
15679690 TGAGAGTCTG
* * *
15679700 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTTAGCCAT-AGTCTAAGCATACGAAGTT
1 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCC-TCAGTCTAAGCATACGGAGTT
* * * * * *
15679764 AATTCCCAG-CGTAAGATTGGACCGAACCAAGGGTTGCGACAGTAGGATCGGTAGCACACAGAGG
65 AATTCCCAGTC-TAAGATTGGACCGGACCGAGGGTTACGGCAGTAGGATCGATAGCACGCAGAGG
* ** * * *
15679828 GGACCGGGCCGAT-CCTCGGCTTATGCATTTTGCCTCTCC-GACTGACTGAGCACCCGCACGCCC
129 GGACCAGGCCGATCCCT-GGCTTGCGCATTCTGCCTCTCCGGTC-GGCTGAGCACCCGCACGCCC
* *
15679891 GTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGATCGAGGGT
192 GTTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGATCGAGGGT
* * * * * * * * *
15679956 TGTGGTAGCGGGATCGACAGCACGTAGAGGGGCACCGGGTCGATCCCCAGTTTGCGCATTATGCC
257 TGTGGCAGCGGGACCGATAGCATGCAGAGGGGGATCGGCTCGATCCCCAGCTTGCGCATTATGCC
* * * *
15680021 TCTCCAACTGGCTTAACGCCCAAACACTCGTTTCGTGGATTGACTTAGGCATATAGAGTTCATTC
322 TCTCCAACCGGCTCAACGCCCAAACACTCGTTTCATGGATTGACTTAGGCATACAGAGTTCATTC
* * * *
15680086 CCAGTCTAAGATTGGACCAAACAGAGGGTTGCGATAGCAGGATCGATAGCACGCAGGGGGGAACC
387 CCAGTCTAAGATTGGACCAAACAGAGGGTTACGATAGCAGGATCGACAACACACAGGGGGGAACC
* ** * * * * *
15680151 AAGTCGGTCCTCGACTTACGCATTCTGCCTCTCCGGTCGGCTGAGCGCCTGTACGCTTGTTTCGT
452 AAGTCGATCCTCGACTTACGCATTCTGCCTCTCCGACCGACTGAACGCCTGCACGCTAGTTTCAT
*
15680216 GGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
517 GGGTTGGCTCAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
* * * ** * *
15680281 ATCAGATCGGACTGAGGGTTACGACAGCAGGACC-GACAGCAGGATTC-ATAGCATGCAGAGGGG
582 ATCAGACCAGACCGAGGGTTACG-CAGCAGGACCAG-CAGCAACA-TCGACAGCAAGCAG-GGGG
* * * *
15680344 GACCGAG-TCGGTCCCCGGCTTCCATATTCTACGTCTCC-AGCCGGCTGAGCACCCA
643 GACCGGGCT-GATCCCCGACTTCCATATTCTACCTCTCCGA-CCGGCTGAGCACCCA
* * *
15680399 CACGCTCCTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCTCAGTCTAAGCATACGGAGTTC
1 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCTCAGTCTAAGCATACGGAGTTA
* * * *
15680464 ATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGGCAGCAGGATCGACAGTACGCAGTGGGG
66 ATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGGCAGTAGGATCGATAGCACGCAGAGGGG
* * * * * * * * *
15680529 ACCAAGTCGATCCCTGGCTTGCGCGTTCTGGCTCTCCGGTCGGCTAAGCGCCCGCGCACCCATTT
131 ACCAGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGCCCGTTT
* * * * * *
15680594 CGTGGGTTAGCTTAGGCTTAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGATCGAGGGTTATA
196 CATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGATCGAGGGTTGTG
* * * *
15680659 GCAACGAGACCGGTTGCATGCAGAGGGGGATCGAGCT-GATCCCC-GACTTGCGCATTATGCCTC
261 GCAGCGGGACCGATAGCATGCAGAGGGGGATCG-GCTCGATCCCCAG-CTTGCGCATTATGCCTC
**** ** * * * *
15680722 TTTGGCCGGCTCAGTGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCC
324 TCCAACCGGCTCAACGCCCAAACACTCGTTTCATGGATTGACTTAGGCATACAGAGTTCATTCCC
** * * * *
15680787 AGTCTAAGATTGGACCGGACTGAGGGTTACGATAGCAGGATCGACAACACACAGGGGGGGATCGA
389 AGTCTAAGATTGGACCAAACAGAGGGTTACGATAGCAGGATCGACAACACACAGGGGGGAACCAA
** * * *
15680852 GTCGATCC-CTGACTTGTGCATTCTGTCTTTCCGACCGACTGAATG-CTCGCACGCTAGTTTCAT
454 GTCGATCCTC-GACTTACGCATTCTGCCTCTCCGACCGACTGAACGCCT-GCACGCTAGTTTCAT
* * *
15680915 GGGTTGGCTCAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCTAGTCTAAG
517 GGGTTGGCTCAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
** ** * *
15680980 ATC-GAACCAGACCGAGGGTTGTGGTGCAGGACCAGCAGCAACATCGACAGCAAGTAGGGGGGAT
582 ATCAG-ACCAGACCGAGGGTTACGCAGCAGGACCAGCAGCAACATCGACAGCAAGCAGGGGGGAC
** * * * * *
15681044 CGGGCTGATCCTTGACTTGCATATTCTGCCTCTCCGATCGGTTGAGCGCCCA
646 CGGGCTGATCCCCGACTTCCATATTCTACCTCTCCGACCGGCTGAGCACCCA
* * *
15681096 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTAAGCATACGGAGTTA
1 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCTCAGTCTAAGCATACGGAGTTA
* ** * * * * *
15681161 ATT-CCAAT-TAAAGATCAGATCAGACTGAGGGTTATGGCAGTAGGATC-AGTAGCACGCAGGGG
66 ATTCCCAGTCT-AAGATTGGACCGGACCGAGGGTTACGGCAGTAGGATCGA-TAGCACGCAGAGG
* * * * *
15681223 GGATCAGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGGTCGGCTGAGCATCCGTACGCCCGT
129 GGACCAGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGCCCGT
* * *
15681288 TTCATGGGTTTGCTTAGGCATAAGGAGTTCATTCTATGTCTAAGCCCCAACCGGATCGAGGGTTG
194 TTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGATCGAGGGTTG
* *
15681353 TGGCAGTGGGACCGATAGCATGCAGAGGGGGATCGGGTCGATCC
259 TGGCAGCGGGACCGATAGCATGCAGAGGGGGATCGGCTCGATCC
15681397 TCGATTTGTG
Statistics
Matches: 819, Mismatches: 163, Indels: 35
0.81 0.16 0.03
Matches are distributed among these distances:
695 4 0.00
696 186 0.23
697 107 0.13
698 30 0.04
699 484 0.59
700 8 0.01
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.24
Consensus pattern (697 bp):
CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCTCAGTCTAAGCATACGGAGTTA
ATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGGCAGTAGGATCGATAGCACGCAGAGGGG
ACCAGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCACCCGCACGCCCGTTT
CATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGATCGAGGGTTGTG
GCAGCGGGACCGATAGCATGCAGAGGGGGATCGGCTCGATCCCCAGCTTGCGCATTATGCCTCTC
CAACCGGCTCAACGCCCAAACACTCGTTTCATGGATTGACTTAGGCATACAGAGTTCATTCCCAG
TCTAAGATTGGACCAAACAGAGGGTTACGATAGCAGGATCGACAACACACAGGGGGGAACCAAGT
CGATCCTCGACTTACGCATTCTGCCTCTCCGACCGACTGAACGCCTGCACGCTAGTTTCATGGGT
TGGCTCAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
GACCAGACCGAGGGTTACGCAGCAGGACCAGCAGCAACATCGACAGCAAGCAGGGGGGACCGGGC
TGATCCCCGACTTCCATATTCTACCTCTCCGACCGGCTGAGCACCCA
Found at i:15683229 original size:158 final size:157
Alignment explanation
Indices: 15682753--15683253 Score: 487
Period size: 159 Copynumber: 3.2 Consensus size: 157
15682743 CCCAGTCTAA
*
15682753 GCATACAGAGTTCATTCCCA-GTCTAAGATCAGACCGGATCGAGGGTTACGACAGCA-GATTCGC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGATCGAGGGTTACGACAGCAGGA-TCGC
** * * * * * *
15682816 AGCACGCAATGGGGACCGAGTCGATCCCCAACTTGCGCGTCCTGGCTCTCCGATCGACTGAGTGC
64 AGCACGCAGGGGGGATCGAGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGTGC
*
15682881 CCGCACAC-CTGTTTCGTGGGTTGGCTTAG
129 CCGCACGCTC-GTTTCGTGGGTTGGCTTAG
* ** * * ** *
15682910 GCATAGGGAGTTCATTCCATGTCTAAGCCCCA-ATCGGATCGAGGGTTATGGTAGC-GAGACCGG
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCGGATCGAGGGTTACGACAGCAG-GATC-G
* * * *
15682973 CAGCACGCAGAGGGGGATCGAGTCGATCCCTGATTTGCGCATTATGCCTCTCCGA-CTGGCTTAG
63 CAGCACGCAG-GGGGGATCGAGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGATC-GGCTGAG
* * * * *
15683037 CGCCCGAACGCTCATTTCATGGGTTGACTTAG
126 TGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
** * *
15683069 GCATACGGAGTTCATTCCCA-GTCTAAGATTGGACC-GAACTGAGAGTTACGACAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCGGATC-GAGGGTTACGACAGCAGGATCG-
* * * * * *
15683132 CAGTACGCAGGGGGGATCGGGTCGATCCCCGACTTGTGCATTCTGCCTTTTCGATCGGCTGAATG
63 CAGCACGCAGGGGGGATCGAGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGTG
* *
15683197 CTCGCACGCTCGTTTCGTGGGTTGGCTCAG
128 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
15683227 GCATACGGGGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
15683254 CATATGGAGT
Statistics
Matches: 272, Mismatches: 57, Indels: 29
0.76 0.16 0.08
Matches are distributed among these distances:
156 3 0.01
157 44 0.16
158 108 0.40
159 112 0.41
160 5 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCGGATCGAGGGTTACGACAGCAGGATCGCAG
CACGCAGGGGGGATCGAGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGTGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:15683265 original size:26 final size:26
Alignment explanation
Indices: 15683227--15683279 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15683217 GTTGGCTCAG
*
15683227 GCATACGGGGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
15683253 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15683279 G
1 G
15683280 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15684508 original size:26 final size:26
Alignment explanation
Indices: 15684464--15684513 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
15684454 TGGACATAGA
*
15684464 CATACGAAGTTCATCCCCAGTCTAGG
1 CATACGAAGTGCATCCCCAGTCTAGG
* *
15684490 CATACGGAGTGCATTCCCAGTCTA
1 CATACGAAGTGCATCCCCAGTCTA
15684514 AGATCTAATC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.24
Consensus pattern (26 bp):
CATACGAAGTGCATCCCCAGTCTAGG
Found at i:15684982 original size:26 final size:26
Alignment explanation
Indices: 15684952--15685003 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15684942 GTTGGCTTAG
15684952 GCATAC-AGAGTTCATT-CCATGTCTAA
1 GCATACGA-AGTTCATTCCCA-GTCTAA
15684978 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15685004 CATCGGATCA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15685179 original size:26 final size:26
Alignment explanation
Indices: 15685149--15685199 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15685139 TTGGCTTAGG
15685149 CATACGGAGTTCATT-CCATGTCTAAC
1 CATACGGAGTTCATTCCCA-GTCTAAC
15685175 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
15685200 GAGTTTAAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAC
Found at i:15691821 original size:26 final size:26
Alignment explanation
Indices: 15691771--15691823 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15691761 GTTGACTTAG
*
15691771 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
15691797 GCATACGGAGTTCATTCCTAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
15691823 G
1 G
15691824 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:15692151 original size:26 final size:26
Alignment explanation
Indices: 15692115--15692166 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15692105 TTGGCTTAGT
*
15692115 CATACGGAGTTAATT-CCATGTCTAAG
1 CATACAGAGTTAATTGCCA-GTCTAAG
*
15692141 CATACAGAGTTCATTGCCAGTCTAAG
1 CATACAGAGTTAATTGCCAGTCTAAG
15692167 AGTTTGAGCC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTAATTGCCAGTCTAAG
Found at i:15692841 original size:26 final size:26
Alignment explanation
Indices: 15692804--15692856 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15692794 GTTGACTTAG
*
15692804 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
15692830 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
15692856 G
1 G
15692857 ATTGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:15693353 original size:26 final size:26
Alignment explanation
Indices: 15693306--15693356 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15693296 TGGCTAAGGC
*
15693306 ATACAGAGTTCATTCCATGTCTAAGT
1 ATACAGAGTTCATTCCAGGTCTAAGT
15693332 ATACAGAGTTCATTCTC-GGTCTAAG
1 ATACAGAGTTCATTC-CAGGTCTAAG
15693357 ATTGGATCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (26 bp):
ATACAGAGTTCATTCCAGGTCTAAGT
Found at i:15693537 original size:26 final size:26
Alignment explanation
Indices: 15693501--15693552 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15693491 TTGACTTAGC
*
15693501 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACAGAGTTCATCCCCAGTCTAAG
*
15693527 CATACAGAGTTCATCCCTAGTCTAAG
1 CATACAGAGTTCATCCCCAGTCTAAG
15693553 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (26 bp):
CATACAGAGTTCATCCCCAGTCTAAG
Found at i:15693879 original size:26 final size:26
Alignment explanation
Indices: 15693845--15693895 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15693835 TGACTTAGCT
15693845 ATACAGAGTTCATTC-CATGTCTAAGC
1 ATACAGAGTTCATTCTCA-GTCTAAGC
*
15693871 ATACGGAGTTCATTCTCAGTCTAAG
1 ATACAGAGTTCATTCTCAGTCTAAG
15693896 ATCGAACTAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (26 bp):
ATACAGAGTTCATTCTCAGTCTAAGC
Found at i:15694136 original size:550 final size:539
Alignment explanation
Indices: 15693302--15694446 Score: 1261
Period size: 550 Copynumber: 2.1 Consensus size: 539
15693292 GGGTTGGCTA
* * * * * *
15693302 AGGCATACAGAGTTCATTCCATGTCTAAGTATACAGAGTTCATTCTCGGTCTAAGATTGGATCGG
1 AGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCTCAGTCTAAGATCGAATCAG
* ** * *
15693367 ACCGAGGGTTGCGGCAGCAGGACCAACAGCAGGATCGACAGCGTAGGGGGTGATCGAGCCGATCC
66 ACCGAGGGTTGCGACAGCAGGACCAACAGCAGGATCGACAGCCCAGGGGGTGACCGAGCCGAACC
* * * *
15693432 CCGGCTTGCGCATTCTGCCTCTCCGGTCAGCCTCTCCAGTCACACGCTCATTTCGTGTGTTGACT
131 CCGGCTTGCACATTCTACCTCTCCGGTCAGCCTCTCCAGCCACACGCTCATTTCATGTGTTGACT
* *
15693497 TAGCCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATCCCTAGTCTAAGATCAGACCG
196 TAGCCATACGGAGTTCATCCCCAGTCGAAGCATACAGAGTTCATCCCTAGTCTAAGATCAGACAG
* * * * *
15693562 AACCAAGGGTTACGGTAGCAGGATCGACTGAACGCAGAGGGGACTGGGTCGAT-CCTCGGCTTGC
261 AACCAAGAGTTACGATAGCAGGATCGACAGAACGCAGAGGGGACCGGGTCGATCCCT-GGCTTAC
* * * * * *
15693626 GTATTTTACCTCTCTGCCCGGTTGAGCACCCGCACACCCATTTCGTGGGTTGGCTTAGGCATAGG
325 GCATTCTACCTCTCCGCCCGGCTAAGCACCCGCACACCCATTTCATGGGTTGGCTTAGGCATAGG
* * * * * *
15693691 GAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGATTTTGGTAGTGGGATCGATAGCATGCA
390 GAGTTCATTCCATGTCTAAGCCCCAGCCGAATCGAGGATTGTGGCAGCGGGACCGATAGCACGCA
* * * *
15693756 GAGGGTGACCGGGTCT-ATCCCCTGCTTGCAAATTATACCTCTCGGGTCAG-CTCAGTGACCGAA
455 GAGGGGGACCGGG-CTGATCCCCGGCTTGCAAATTATACCTCTCCGG-CAGACTCAGCGACCGAA
15693819 CACTCATTTCATGAGTTGACTT
518 CACTCATTTCATGAGTTGACTT
15693841 A-GCTATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCTCAGTCTAAGATCGAA-CT
1 AGGC-ATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCTCAGTCTAAGATCGAATC-
* * * *
15693904 AGACCGAGGGTTGCGATAGCAGGGCCAGCAGCTGGATCGACAGCACCAGGGGG-GACCGA-CCGA
64 AGACCGAGGGTTGCGACAGCAGGACCAACAGCAGGATCGACAGC-CCAGGGGGTGACCGAGCCGA
* *
15693967 ACCCTGGCTTGCATATTCTACCTCTCCGGTC-GACCTCTCCGGCCGGTTAAGCACCCACACGCTC
128 ACCCCGGCTTGCACATTCTACCTCTCCGGTCAG-CCTCT----CC-----AG---CCACACGCTC
* * * *
15694031 GTTTCATG-GATTGACTTAGGCATACGGAGTTCATCCCTAGTCGAAGCATACGGAGTTCATTCCC
180 ATTTCATGTG-TTGACTTAGCCATACGGAGTTCATCCCCAGTCGAAGCATACAGAGTTCA-TCCC
*** ** * *
15694095 -AGTCTAAGAT-AGGATCAG-ATTGAGAGTTGTGATAGCAGGATCGACAGCACGCAGGGGGGACC
243 TAGTCTAAGATCA-GA-CAGAACCAAGAGTTACGATAGCAGGATCGACAGAACGCAGAGGGGACC
* * * * * *
15694157 GGGTCGATCCCTGGCTTACGCATTCTACCTCTCCGGCCTGCTAAGCGCCCGTACGCCCGTTTCAT
306 GGGTCGATCCCTGGCTTACGCATTCTACCTCTCCGCCCGGCTAAGCACCCGCACACCCATTTCAT
* *
15694222 GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAATTGAGGGTTGTGGCA
371 GGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAATCGAGGATTGTGGCA
* * * ** * *
15694287 GCGGGACCGGTAGCACGTAGAGGGGGATCGGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGG
436 GCGGGACCGATAGCACGCAGAGGGGGACCGGGCTGATCCCCGGCTTGCAAATTATACCTCTCCGG
* * * * ** * * * *
15694352 CCGACTGAGCGCCCGCACGTTCGTTTCGTGGGTTGGCTT
501 CAGACTCAGCGACCGAACACTCATTTCATGAGTTGACTT
* *
15694391 AGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
1 AGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCTCAGTCTAAGA
15694447 GTTTGAGCCA
Statistics
Matches: 500, Mismatches: 82, Indels: 37
0.81 0.13 0.06
Matches are distributed among these distances:
537 1 0.00
538 38 0.08
539 96 0.19
540 6 0.01
542 2 0.00
547 2 0.00
549 6 0.01
550 338 0.68
551 11 0.02
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (539 bp):
AGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCTCAGTCTAAGATCGAATCAG
ACCGAGGGTTGCGACAGCAGGACCAACAGCAGGATCGACAGCCCAGGGGGTGACCGAGCCGAACC
CCGGCTTGCACATTCTACCTCTCCGGTCAGCCTCTCCAGCCACACGCTCATTTCATGTGTTGACT
TAGCCATACGGAGTTCATCCCCAGTCGAAGCATACAGAGTTCATCCCTAGTCTAAGATCAGACAG
AACCAAGAGTTACGATAGCAGGATCGACAGAACGCAGAGGGGACCGGGTCGATCCCTGGCTTACG
CATTCTACCTCTCCGCCCGGCTAAGCACCCGCACACCCATTTCATGGGTTGGCTTAGGCATAGGG
AGTTCATTCCATGTCTAAGCCCCAGCCGAATCGAGGATTGTGGCAGCGGGACCGATAGCACGCAG
AGGGGGACCGGGCTGATCCCCGGCTTGCAAATTATACCTCTCCGGCAGACTCAGCGACCGAACAC
TCATTTCATGAGTTGACTT
Found at i:15694429 original size:26 final size:26
Alignment explanation
Indices: 15694393--15694445 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15694383 GTTGGCTTAG
15694393 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15694419 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15694445 G
1 G
15694446 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15695324 original size:26 final size:26
Alignment explanation
Indices: 15695288--15695339 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15695278 TGGCTTAGGC
15695288 ATACGGAGTTCATT-CCATGTCTAAGA
1 ATACGGAGTTCATTCCCA-GTCTAAGA
15695314 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACGGAGTTCATTCCCAGTCTAAGA
15695340 TCAGACCGGA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGA
Found at i:15695672 original size:26 final size:26
Alignment explanation
Indices: 15695643--15695693 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
15695633 TTGCATAGGG
*
15695643 ATACGGAGTTCATTCCGTGTCTAAGC
1 ATACGGAGTTCATTCCATGTCTAAGC
15695669 ATACGGAGTTCATTCCATGTCTAAG
1 ATACGGAGTTCATTCCATGTCTAAG
15695694 ATCCAACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATTCCATGTCTAAGC
Found at i:15695680 original size:355 final size:354
Alignment explanation
Indices: 15695222--15695863 Score: 837
Period size: 355 Copynumber: 1.8 Consensus size: 354
15695212 CTAATCCTCA
* * * * * * *
15695222 GCTTGTGCATTCTGCCTCTTCGGTCGGTTGAGCACCCGCACGCTCGTTACATGGGTTGGCTTAGG
1 GCTTATGCATTATGCCTCTCCGGTCGGTTGAGCACCCGCAAGCTCATTACAGGGGTTGGCATAGG
15695287 CATACGGAGTTCATTCCATGTCTAAGAATACGGAGTTCATTCCCA-GTCTAAGAT-CAGACCGGA
66 CATACGGAGTTCATTCCATGTCTAAGAATACGGAGTTCATT-CCATGTCTAAGATCCA-ACCGGA
** * *
15695350 CCA-AGGGTTGCGGCAACAGGACCAACAGCAGGATCGACAGCACGTAGAGGGGGACCGGGCTGAT
129 -CAGAGGGTTGCGGCAACAGGACCAACAGCAGGATCGACAGCACACAG-GGGGGACCGGACCGAT
* * *
15695414 CCTC-GACTTACGCATTATGCCTCTCCGACCGGCTCAGCGCTCGAACGCTCATTTCATGGGTTGA
192 CCCCAG-CTTACACATTATGCCTCTCCGACCGGCTCAGCGCCCGAACGCTCATTTCATGGGTTGA
**
15695478 CTTAGGCATATGGAGATCATTCCCA-GTCTAAGATCGGACCGGACCGAGGGTTACAGCAGCAAGA
256 CTTAGGCATACAGAGATCATT-CCATGTCTAAGATCGGACCGGACCGAGGGTTACAGCAGCAAGA
15695542 TTGACAGCATGTAGGGGGGACCGGGCCGATCCCTG
320 TTGACAGCATGTAGGGGGGACCGGGCCGATCCCTG
* * *
15695577 GCTTATGCATTATGCCTCTCCGGTCGGTTGAGCGCCCGTAAGCTCATTTCACGGGGTT-GCATAG
1 GCTTATGCATTATGCCTCTCCGGTCGGTTGAGCACCCGCAAGCTCATTACA-GGGGTTGGCATAG
* * *
15695641 GGATACGGAGTTCATTCCGTGTCTAAGCATACGGAGTTCATTCCATGTCTAAGATCCAACCGGAC
65 GCATACGGAGTTCATTCCATGTCTAAGAATACGGAGTTCATTCCATGTCTAAGATCCAACCGGAC
* * * **
15695706 AGAGGGTTGCGGCAGCATGACCAGCAGCAGGATCGGTAGCACACAGGGGGGACCGGACCGATCCC
130 AGAGGGTTGCGGCAACAGGACCAACAGCAGGATCGACAGCACACAGGGGGGACCGGACCGATCCC
* * * ** * * * * *
15695771 CAGCTTGCACATTTTGCCTCTCTGGTCGGTTGAGTGCCCGCACGCTCATTTCATGGGTTGGCTTA
195 CAGCTTACACATTATGCCTCTCCGACCGGCTCAGCGCCCGAACGCTCATTTCATGGGTTGACTTA
*
15695836 GGCATACAGAGTTCATTCCATGTCTAAG
260 GGCATACAGAGATCATTCCATGTCTAAG
15695864 CATACGGAGT
Statistics
Matches: 243, Mismatches: 38, Indels: 13
0.83 0.13 0.04
Matches are distributed among these distances:
353 3 0.01
354 93 0.38
355 140 0.58
356 7 0.03
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.23
Consensus pattern (354 bp):
GCTTATGCATTATGCCTCTCCGGTCGGTTGAGCACCCGCAAGCTCATTACAGGGGTTGGCATAGG
CATACGGAGTTCATTCCATGTCTAAGAATACGGAGTTCATTCCATGTCTAAGATCCAACCGGACA
GAGGGTTGCGGCAACAGGACCAACAGCAGGATCGACAGCACACAGGGGGGACCGGACCGATCCCC
AGCTTACACATTATGCCTCTCCGACCGGCTCAGCGCCCGAACGCTCATTTCATGGGTTGACTTAG
GCATACAGAGATCATTCCATGTCTAAGATCGGACCGGACCGAGGGTTACAGCAGCAAGATTGACA
GCATGTAGGGGGGACCGGGCCGATCCCTG
Found at i:15695867 original size:26 final size:26
Alignment explanation
Indices: 15695837--15695889 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15695827 GTTGGCTTAG
15695837 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
15695863 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15695889 G
1 G
15695890 AGTTTGACGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15696197 original size:27 final size:27
Alignment explanation
Indices: 15696159--15696211 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
15696149 GTTGACTTAG
15696159 GCATACGGAGTTCATCCCCAGTCTAAA
1 GCATACGGAGTTCATCCCCAGTCTAAA
* * *
15696186 GCATATGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15696212 GATCAGACCG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (27 bp):
GCATACGGAGTTCATCCCCAGTCTAAA
Found at i:15696647 original size:157 final size:153
Alignment explanation
Indices: 15696186--15696685 Score: 482
Period size: 157 Copynumber: 3.2 Consensus size: 153
15696176 CCAGTCTAAA
* * * * * **
15696186 GCATATGGAGTTTATTCCCAGTCTAAGATCAGACCGGACCGATGGTTGCGACAGCAGGAT-TGCA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGA-TGGACCGAGGGTTGCGGCAGCAGGATCAACA
* * * * * *
15696250 GCACACAGGGGGGACTGGACCGATCCTCGACTTGCGCATTCTGCCTCTCCGATCGGTTGAATGCC
64 GCACGCA-GGGGGACAGG-CCGATCCCCGACTTGCGCATTCTACCTCTCCGATCGATTGAACGCC
* * *
15696315 CACACGCCCGTTTCATGGGTTTGCTTAG
127 CGCACGCTCGTTTCGTGGG-TTGCTTAG
* * ** * * *
15696343 GCATAGGGAGTTCATTCCATGTCTATGCCCCAGATGGACCGAGGGGTGTGGCAGCAGGA-CTGAC
1 GCATACGGAGTTCATTCCA-GTCTAAG-ATCAGATGGACCGAGGGTTGCGGCAGCAGGATC-AAC
* * * * * *
15696407 AGCACGTAGAGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTACCTCTTCGACCGACTCAACG
63 AGCACG--CAGGGGGA-CAGGCCGATCCCCGACTTGCGCATTCTACCTCTCCGATCGATTGAACG
* *
15696472 CCCGAACGCTCATTTCGTGGGTTGACTTAG
125 CCCGCACGCTCGTTTCGTGGGTTG-CTTAG
* * * *
15696502 GCATACAGAGTTCATTCCTAGTCTAAGATCGGATTGGACAGAGGGTTGCGGTAGCAGGATCAACA
1 GCATACGGAGTTCATTCC-AGTCTAAGATCAGA-TGGACCGAGGGTTGCGGCAGCAGGATCAACA
* *
15696567 GCACGCAGGGGGACCAGGCCGATCCCCGACTTGCGCATTCTACCTCTCCGGTCGATTGAGCGCCC
64 GCACGCAGGGGGA-CAGGCCGATCCCCGACTTGCGCATTCTACCTCTCCGATCGATTGAACGCCC
15696632 GCACGCTCGTTTCGTGGGTTGGCTTAG
128 GCACGCTCGTTTCGTGGGTT-GCTTAG
* *
15696659 GGATACGGAGTTCATTGCATGTCTAAG
1 GCATACGGAGTTCATTCCA-GTCTAAG
15696686 CATATAGAGT
Statistics
Matches: 277, Mismatches: 53, Indels: 26
0.78 0.15 0.07
Matches are distributed among these distances:
156 4 0.01
157 136 0.49
158 17 0.06
159 114 0.41
160 6 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (153 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGATGGACCGAGGGTTGCGGCAGCAGGATCAACAGC
ACGCAGGGGGACAGGCCGATCCCCGACTTGCGCATTCTACCTCTCCGATCGATTGAACGCCCGCA
CGCTCGTTTCGTGGGTTGCTTAG
Found at i:15696922 original size:26 final size:26
Alignment explanation
Indices: 15696855--15696924 Score: 122
Period size: 26 Copynumber: 2.7 Consensus size: 26
15696845 GTTGACTTAG
*
15696855 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15696881 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15696907 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
15696925 TGAACCATAA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.24
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15697215 original size:26 final size:26
Alignment explanation
Indices: 15697164--15697215 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15697154 GTTGACTTAG
* *
15697164 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCAAGTCTAA
15697190 GCATACAGAGTTCATTCCCAAG-CTAA
1 GCATACAGAGTTCA-TCCCAAGTCTAA
15697216 AATCGAACCG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 17 0.74
27 6 0.26
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCAAGTCTAA
Found at i:15697536 original size:26 final size:26
Alignment explanation
Indices: 15697507--15697559 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15697497 GTTGACTTAG
15697507 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
15697533 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15697559 G
1 G
15697560 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15697834 original size:343 final size:342
Alignment explanation
Indices: 15697139--15697878 Score: 897
Period size: 343 Copynumber: 2.2 Consensus size: 342
15697129 GAGCGTCCGT
*
15697139 ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCA
1 ACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCA
* * * *
15697204 TTCCCAAGCTAAAATCGAACCGAACTGAGGGTTGCGATAGCAGGATCAGTAGCACGTAGGGTGGA
66 TTCCCAAGCTAAAATCGAACCGAACCGAAGGTTGCGACAGCAGGATCAGTAGCACGTAGGGAGGA
* * * *
15697269 TCAGGCCGATCCCGGGCTTCCTCACTTTACCTCTCCGATAGGCTGAGCGCCCGCACGCACGTTTC
131 TCAGGCCGATCCCGAGCTTCCACACTTTACCTCTCCGATAGGCTGAGCACCCGCACACACGTTTC
* *
15697334 ATGGATTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCCAGCCGGACCGAGGGTTGTGG
196 ATGGATTGGCTTAGGCATAGGAAGTTCATTCCATGTCTAAACCCCAACCGGACCGAGGGTTGTGG
* * * *
15697399 TAGCGGCACCGACAGCACGTAGAGGAGGACTAGGTCGACCCTCAGCTTGCGCATTCTACCTCTCC
261 CAGAGG-ACCGACAGCACGTAGAGGAGGACCAGGTCGACCCTCAGCTTGCGCATTATACCTCTCC
* *
15697464 GACGGACTGAGCACCCGT
325 GACGGACTCAGCACCCGA
* * **
15697482 ACACTCATTTCACGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCA
1 ACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCA
* * *
15697547 TTCCC-AGTCTAAGATCGAACC-AGACCGAAGGTTGTGGCAGCAGGAT-AGGTAGCACGTAGGGA
66 TTCCCAAG-CTAAAATCGAACCGA-ACCGAAGGTTGCGACAGCAGGATCA-GTAGCACGTAGGGA
* * * * *
15697609 GGATC-GAGCCGATCCTC-AGCTTGCACA-TTCTACCTCTCCGGTCGGTTGAGCACCCGCACACC
128 GGATCAG-GCCGATCC-CGAGCTTCCACACTT-TACCTCTCCGATAGGCTGAGCACCCGCACACA
* * *
15697671 CGTTTCATGGGTTGGCTTAGGCATAGGAAGTTCATTCCATGTCTAAGCCCCAACCGGATCGAGGG
190 CGTTTCATGGATTGGCTTAGGCATAGGAAGTTCATTCCATGTCTAAACCCCAACCGGACCGAGGG
* * * * *
15697736 TTGTGGCAGTTAGG-CCGGCAGCACTTAGA-GAGGGACCGGGTCGATCCCTGA-CTTGTGCATTA
255 TTGTGGCAG--AGGACCGACAGCACGTAGAGGA-GGACCAGGTCGA-CCCTCAGCTTGCGCATTA
* * * *
15697798 TGCCTTTTCGATCGG-CTCAGTACCCGA
316 TACCTCTCCGA-CGGACTCAGCACCCGA
* * * *
15697825 ACGCTCATTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTGTAAGCA
1 ACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
15697879 CCAGGATCGA
Statistics
Matches: 339, Mismatches: 47, Indels: 22
0.83 0.12 0.05
Matches are distributed among these distances:
342 9 0.03
343 319 0.94
344 9 0.03
345 2 0.01
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.23
Consensus pattern (342 bp):
ACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCA
TTCCCAAGCTAAAATCGAACCGAACCGAAGGTTGCGACAGCAGGATCAGTAGCACGTAGGGAGGA
TCAGGCCGATCCCGAGCTTCCACACTTTACCTCTCCGATAGGCTGAGCACCCGCACACACGTTTC
ATGGATTGGCTTAGGCATAGGAAGTTCATTCCATGTCTAAACCCCAACCGGACCGAGGGTTGTGG
CAGAGGACCGACAGCACGTAGAGGAGGACCAGGTCGACCCTCAGCTTGCGCATTATACCTCTCCG
ACGGACTCAGCACCCGA
Found at i:15698014 original size:26 final size:26
Alignment explanation
Indices: 15697984--15698036 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15697974 GTTGGCTTAG
*
15697984 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCACGTCTAA
* *
15698010 GCATATGGAGTTCATTCCCCGTCTAA
1 GCATACGGAGTTCATTCCACGTCTAA
15698036 G
1 G
15698037 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCACGTCTAA
Found at i:15699031 original size:26 final size:26
Alignment explanation
Indices: 15699001--15699053 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
15698991 GTTGACTTAG
15699001 GCATAC-GAAGTTCA-TCCCAAGTCTAA
1 GCATACAG-AGTTCATTCCC-AGTCTAA
15699027 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15699053 G
1 G
15699054 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15699539 original size:26 final size:26
Alignment explanation
Indices: 15699503--15699555 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15699493 GTTGGCTTAG
15699503 GCATACGAAGTTCAAT-CCATGTCTAA
1 GCATACGAAGTTCAATCCCA-GTCTAA
*
15699529 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCAATCCCAGTCTAA
15699555 G
1 G
15699556 AACGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCAATCCCAGTCTAA
Found at i:15699727 original size:26 final size:26
Alignment explanation
Indices: 15699698--15699748 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
15699688 TGACTTAGGC
*
15699698 ATACGGTGTTCATCCCCAATCTAAGT
1 ATACGGAGTTCATCCCCAATCTAAGT
* *
15699724 ATACGGAGTTCATTCCCACTCTAAG
1 ATACGGAGTTCATCCCCAATCTAAG
15699749 ATCGAATCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAATCTAAGT
Found at i:15700399 original size:26 final size:26
Alignment explanation
Indices: 15700362--15700414 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15700352 GTTGACCTAG
15700362 GCATACAAAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
* *
15700388 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
15700414 G
1 G
15700415 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:15700572 original size:184 final size:190
Alignment explanation
Indices: 15700115--15700573 Score: 477
Period size: 191 Copynumber: 2.4 Consensus size: 190
15700105 CGATTTGCGT
** **
15700115 ATTCTACCTCTCCAACCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGA
1 ATTCTACCTCTCCGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGA
** * * *
15700180 GTTCATTCCATGTCTATA-CATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTT
66 GTTCATTCCATGTCTA-AGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACAGACGGTT
*
15700244 ACGGTAGCAGGACCAACAGCAGGCAGCACGCAAGGTGGAATGGGCCGATCCCCGGCTTACGC
130 ACGGTAGCAGGA-CAACAGCAGGCAGCACGCAAGGGGGAATGGGCCGATCCCCGGCTTACGC
* ** * * *
15700306 ATTCTGCCTCTCCGGCCGACTGAGCGCTTGCACGCTCGTTTCGTGGGTTGACCTAGGCATACAAA
1 ATTCTACCTCTCCGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGA
* * *
15700371 GTTCATCCCCA-GTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGATAGACGGTT
66 GTTCAT-TCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACAGACGGTT
* ** * * * * **
15700435 GC-G-A-CA-G-CAGGATC-GGCAGCACGC-AGGGGGGATCGGGTCGATCCCCGGTTTGTGC
130 ACGGTAGCAGGACAACAGCAGGCAGCACGCAAGGGGGAAT-GGGCCGATCCCCGGCTTACGC
* * * * * * * * **
15700490 ATTCTACCTTTCTGGTCGACTGAGCTCCCGTACGCCCGTTTCATGGGTTGGTTTAGGCATAGGGA
1 ATTCTACCTCTCCGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGA
15700555 GTTCATTCCATGTCTAAGC
66 GTTCATTCCATGTCTAAGC
15700574 CCCAATCGGA
Statistics
Matches: 219, Mismatches: 45, Indels: 15
0.78 0.16 0.05
Matches are distributed among these distances:
183 10 0.05
184 90 0.41
185 4 0.02
187 1 0.00
188 2 0.01
189 1 0.00
190 2 0.01
191 106 0.48
192 3 0.01
ACGTcount: A:0.21, C:0.28, G:0.27, T:0.24
Consensus pattern (190 bp):
ATTCTACCTCTCCGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGA
GTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACAGACGGTTA
CGGTAGCAGGACAACAGCAGGCAGCACGCAAGGGGGAATGGGCCGATCCCCGGCTTACGC
Found at i:15700733 original size:26 final size:26
Alignment explanation
Indices: 15700704--15700756 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15700694 GTTGGCTTAG
15700704 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
15700730 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
15700756 G
1 G
15700757 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:15701472 original size:26 final size:26
Alignment explanation
Indices: 15701436--15701488 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15701426 GTTGACTTAG
15701436 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
*
15701462 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15701488 G
1 G
15701489 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15701974 original size:26 final size:26
Alignment explanation
Indices: 15701938--15701990 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15701928 GTTGGCTTAG
15701938 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
15701964 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15701990 G
1 G
15701991 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15702511 original size:25 final size:26
Alignment explanation
Indices: 15702477--15702528 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
15702467 GTTGGCTTAG
15702477 GCATACGGAGTTCATTCC-AGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
15702502 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
15702528 G
1 G
15702529 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 18 0.69
26 8 0.31
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:15702619 original size:11 final size:11
Alignment explanation
Indices: 15702603--15702630 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
15702593 GGCACCATCA
15702603 TCGGAGCATTG
1 TCGGAGCATTG
15702614 TCGGAGCATTG
1 TCGGAGCATTG
15702625 TCGGAG
1 TCGGAG
15702631 AGCCTAACCG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.18, C:0.18, G:0.39, T:0.25
Consensus pattern (11 bp):
TCGGAGCATTG
Found at i:15703244 original size:26 final size:26
Alignment explanation
Indices: 15703207--15703259 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
15703197 GTTGACTTAG
15703207 GCATACGCAGTTCA-TCCCCAGTCTAA
1 GCATACGCAGTT-ATTCCCCAGTCTAA
*
15703233 GCATACAG-AGTTATTTCCCAGTCTAA
1 GCATAC-GCAGTTATTCCCCAGTCTAA
15703259 G
1 G
15703260 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.04
26 22 0.92
27 1 0.04
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGCAGTTATTCCCCAGTCTAA
Found at i:15703704 original size:26 final size:26
Alignment explanation
Indices: 15703668--15703720 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15703658 GGTTGCTTAG
*
15703668 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
15703694 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
15703720 G
1 G
15703721 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:15703984 original size:159 final size:159
Alignment explanation
Indices: 15703761--15704195 Score: 597
Period size: 159 Copynumber: 2.7 Consensus size: 159
15703751 GATCAGAAGT
* * *
15703761 ACACA-AGGGGGACCG-GGCCGATCCCCGACTTGTGCATTTTGCGTCTCCGATCGGCTGAGCGCC
1 ACACAGAGGGGGA-CGAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCC
*
15703824 CGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACACCAG-CTA
65 CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACACCAGTC-A
15703888 GATCGAGGGTTGTGGCAGCGGGACCGACAGC
129 GATCGAGGGTTGTGGCAGCGGGACCGACAGC
* *
15703919 ACACAGAGGGGGACGAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGCTGAGTGCCC
1 ACACAGAGGGGGACGAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCC
* * * * * ** *
15703984 GCACGTCCATTTCGTGGGTTGGCTTAAGCGTGGGGAGTTCATTCCATGTCTAGGCCCCAGTCAGA
66 GCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACACCAGTCAGA
* * *
15704049 TTGAGGGTTGTGGTAGCGGGACTGACAGC
131 TCGAGGGTTGTGGCAGCGGGACCGACAGC
* * * * * *
15704078 ACATAGAGAGGGACTAAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCGCCC
1 ACACAGAGGGGGACGAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCC
** *
15704143 GCACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
66 GCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
15704196 GCATACGGAG
Statistics
Matches: 240, Mismatches: 34, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
158 7 0.03
159 232 0.97
160 1 0.00
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (159 bp):
ACACAGAGGGGGACGAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCC
GCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACACCAGTCAGA
TCGAGGGTTGTGGCAGCGGGACCGACAGC
Found at i:15704206 original size:26 final size:26
Alignment explanation
Indices: 15704170--15704222 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15704160 GTTGGCTTAG
15704170 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15704196 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15704222 G
1 G
15704223 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15705090 original size:26 final size:27
Alignment explanation
Indices: 15705060--15705113 Score: 83
Period size: 26 Copynumber: 2.0 Consensus size: 27
15705050 GTTGGCTTAG
15705060 GCATACGGAGTTCA-TCCCCAGTCTAA
1 GCATACGGAGTTCATTCCCCAGTCTAA
* *
15705086 GCATATGGAGTTCATTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCCAGTCTAA
15705113 G
1 G
15705114 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 13 0.52
27 12 0.48
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (27 bp):
GCATACGGAGTTCATTCCCCAGTCTAA
Found at i:15705411 original size:159 final size:159
Alignment explanation
Indices: 15705147--15705589 Score: 469
Period size: 159 Copynumber: 2.8 Consensus size: 159
15705137 GCAGCAGGAT
** * * * *
15705147 CGACAGCACACAG-GAGGGACCGAGTCGATCCTCGACTTGTGTAATCTGCCTCTCCGACCGGCTG
1 CGACAGCATGCAGAGAGGGACCGAGTTGATCCTCGGCTTGTGTATTCTGCCTCTCCGGCCGGCTG
* *
15705211 AGCGCCCGCATAC-CCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACC
66 AGCGCCCG--TACGCTCGTTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACC
* ** *
15705275 CCAGCCAGATTGAAGGTTGTGGCAGTGGGAC
129 CCAGCCAGATCGAAGGTTGTGGCAACGAGAC
* * * * *
15705306 CGACAGCATGCAGAGGGGGACCGTGTTGATCCCCGGCTTGTGTATTCTGCCTCTCCGGGCAGCTG
1 CGACAGCATGCAGAGAGGGACCGAGTTGATCCTCGGCTTGTGTATTCTGCCTCTCCGGCCGGCTG
* * * *
15705371 AGCACCCGTACGCTCGTTTCGTGGGTTAGCTTAGGCATAGGAAGTTCATTCCATGTCTAAGCCCC
66 AGCGCCCGTACGCTCGTTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCC
* * *
15705436 AGCCGGATCGAGGGTTGTGGCAACGAGAG
131 AGCCAGATCGAAGGTTGTGGCAACGAGAC
* ** * * * * * ** * *
15705465 TGGTAGCATGTAGAGAAGGATCGGGCTGATCCTCGGCTT-TCACATTCTACCTTTCCGGCCGGCT
1 CGACAGCATGCAGAGAGGGACCGAGTTGATCCTCGGCTTGT-GTATTCTGCCTCTCCGGCCGGCT
* * * * *
15705529 GAGCGCCCGCATGCTCATTTCATGGGTTAGTTTAGGCATACGGAGTTCATTCCATGTCTAA
65 GAGCGCCCGTACGCTCGTTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
15705590 GCATACGGAG
Statistics
Matches: 233, Mismatches: 48, Indels: 6
0.81 0.17 0.02
Matches are distributed among these distances:
158 4 0.02
159 180 0.77
160 49 0.21
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (159 bp):
CGACAGCATGCAGAGAGGGACCGAGTTGATCCTCGGCTTGTGTATTCTGCCTCTCCGGCCGGCTG
AGCGCCCGTACGCTCGTTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAACCCC
AGCCAGATCGAAGGTTGTGGCAACGAGAC
Found at i:15705594 original size:26 final size:26
Alignment explanation
Indices: 15705564--15705616 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15705554 GTTAGTTTAG
15705564 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15705590 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15705616 G
1 G
15705617 AGTGTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15706951 original size:26 final size:26
Alignment explanation
Indices: 15706911--15706963 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15706901 GTTGACTTAG
15706911 GCATACAGAGGTCATCCCCAGTCTAA
1 GCATACAGAGGTCATCCCCAGTCTAA
* * * *
15706937 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGGTCATCCCCAGTCTAA
15706963 G
1 G
15706964 ATCGAACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGGTCATCCCCAGTCTAA
Found at i:15708330 original size:158 final size:159
Alignment explanation
Indices: 15708116--15708409 Score: 358
Period size: 158 Copynumber: 1.9 Consensus size: 159
15708106 CAGCTGGATC
* **
15708116 GAGGGTTGTGGCAGCAGGACTGACAGCACACAGAGAGGGACCGGGCCGATCCCCGACTTACACAT
1 GAGGGTTGCGGCAGCAGGACTGACAGCACACAGAGAGGGACCAAGCCGATCCCCGACTTACACAT
* ** * * *
15708181 TATGCCTCTCCGGTAGGCTCAGTGCCCGAACGCTCATTTTGTGGGTT-GACTTAGGCATACGGAG
66 TATACCTCTCCGACAGACTCAGCGCCCGAACGCTCATTTCGTGGGTTAG-CTTAGGCATACGGAG
15708245 TTCATTCCCAGTCTAAGATCAGATCAGACT
130 TTCATTCCCAGTCTAAGATCAGATCAGACT
* * ** * ***
15708275 GAGGGTTGCGGCAGTAGGATTGACAGCATGCAG-GGGGGACCAAGCCGATCCCCGACTTGTGCAT
1 GAGGGTTGCGGCAGCAGGACTGACAGCACACAGAGAGGGACCAAGCCGATCCCCGACTTACACAT
* * * * * *
15708339 TCTACCTCTCCGACCGACTGAGCGCCCGTACGTTCGTTTCGTGGGTTAGCTTAGGCATACGGAGT
66 TATACCTCTCCGACAGACTCAGCGCCCGAACGCTCATTTCGTGGGTTAGCTTAGGCATACGGAGT
15708404 TCATTC
131 TCATTC
15708410 TATGTCTAAG
Statistics
Matches: 111, Mismatches: 23, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
158 82 0.74
159 29 0.26
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
GAGGGTTGCGGCAGCAGGACTGACAGCACACAGAGAGGGACCAAGCCGATCCCCGACTTACACAT
TATACCTCTCCGACAGACTCAGCGCCCGAACGCTCATTTCGTGGGTTAGCTTAGGCATACGGAGT
TCATTCCCAGTCTAAGATCAGATCAGACT
Found at i:15708631 original size:26 final size:26
Alignment explanation
Indices: 15708602--15708654 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15708592 GTTGACTTAG
15708602 GCATAAGGAGTTC-TTCCCCAGTCTAA
1 GCATAAGGAGTTCATT-CCCAGTCTAA
* *
15708628 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
15708654 G
1 G
15708655 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:15709863 original size:26 final size:26
Alignment explanation
Indices: 15709826--15709878 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15709816 GTTGGCTTAG
*
15709826 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
15709852 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15709878 G
1 G
15709879 AGTTTGAACC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15710437 original size:881 final size:880
Alignment explanation
Indices: 15708881--15710574 Score: 2728
Period size: 881 Copynumber: 1.9 Consensus size: 880
15708871 CCGATCCCCG
* * *
15708881 GCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCTGCACACTCGTTTCATGGGTTGGCTTAGG
1 GCTTGCACATTCTGCCTCTCCGATCGACTGAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAGG
* *
15708946 CATACAGAGTTCATTCTATGTCTAAGCGTACGAAGTTCATTCCCAGTCTAAGAGTTTGAACCACG
66 CATACAGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGAGTTTGAACCACG
* *
15709011 GTGCACATGCTGGGCTCGGGCATGTGATGGTGCCACATATTTTTCACCCGAGGCACCATCGCCGG
131 GTGCACATGCTGGGCTCAGGCATGTGATGGTGCCACATATTTTTCACCCGAGGCACCATCGCCAG
15709076 AGCATCGCCAGAGAGCCTAACCGACGGCATTGGGGGTTCCGACGATTTGGGGGCACCAGGGGGTG
196 AGCATCGCCAGAGAGCCTAACCGACGGCATTGGGGGTTCCGACGATTTGGGGGCACCAGGGGGTG
* *
15709141 TGCACACATGATGTGTGATGGGTGCTGGTACTTCACCCTTATATTGGCCCCTATCCCTCATCAAA
261 TGCACACATGATGTGCGATGGGTGCTGGTAATTCACCCTTATATTGGCCCCTATCCCTCATCAAA
* *
15709206 CCTCGAGAACTCACACCCCCTTAAAGAGGATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATT
326 CCTCAAGAACTCACACCCCCTTAAAGAGGATTTGAGATTTTATAGGTTTGCTACCAGTAGCCATT
* * * *
15709271 AAAGTGTTTGAAATGGGGACATTTTTTTCAAACGGTCACAAAATCTTCTCCACTTTGAGTTTTTA
391 AAAGTGTTAGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTCTCCACCTCGAGTTTTTA
*
15709336 GCTGAATTGTTTAGTGCATGCCAATAAAAATACAAGGATCACCTCTACCAAATTTGGGGACAAAA
456 GCTGAATTGTTTAGTGCATGCCAATAAAAATACAAGGATCACATCTACCAAATTTGGGGACAAAA
* *
15709401 CTCTTTCTAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAACAGA
521 CTCTTTCTAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTAAAAAACAGA
*
15709466 AAACGGGTCATTTTGCCATGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAG
586 AAACGGGTCATCTTGCCATGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAG
** *
15709531 CCATAAAAATGGCATTGGGATGGCAGAAATATGAAGATGTGCTTGAACCCACCTACCACCCGTTC
651 CCATAAAAATGAAATTGGCATGGCAGAAATATGAAGATGTGCTTGAACCCACCTACCACCCGTTC
* * * * * * *
15709596 GATCCCCGGCTTATGCGTCCTGCCTCTCTGGTCGGCTGAGCGTCCGCACACTTGTTTCGTGGGTT
716 GATCCCCAGCTTACGCAT-CTGCCTCTCTGGTCGACTGAGCGTCCGCACACTCGTTTCATGGGCT
* *
15709661 GACTTAGGCATACGGAGTTCATTCCCAGTATAAGATTGGATTGAATCAAGGGTAGCGGTAGCAGG
780 GACTTAGGCATACAGAGTTCATCCCCAGTATAAGATTGGATTGAATCAAGGGTAGCGGTAGCAGG
15709726 ATGGATAGCACACAGGGGAGACCAGACCGGTTCCCA
845 ATGGATAGCACACAGGGGAGACCAGACCGGTTCCCA
* * * *
15709762 GCTTGCACATTCTGTCTCTCCGGTCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGG
1 GCTTGCACATTCTGCCTCTCCGATCGACTGAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAGG
* *
15709827 CATACGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGAGTTTGAACCATG
66 CATACAGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGAGTTTGAACCACG
* * * * *
15709892 GTGCACATGCTGGGCTTAGGCATGTGATGGTGCCATATTTTTTTCGCCCGGGGCACCATCGCCAG
131 GTGCACATGCTGGGCTCAGGCATGTGATGGTGCCACATATTTTTCACCCGAGGCACCATCGCCAG
** * *
15709957 AGCATCGCTGGAGAGCCTAACCGACGGCATTGGGGGTTCCGATGATTTGGGGGCACCGGGGGGGT
196 AGCATCGCCAGAGAGCCTAACCGACGGCATTGGGGGTTCCGACGATTTGGGGGCACC-AGGGGGT
*
15710022 GTGCGCACATGATGTGCGATGGGTGCTGGTAATTCACCCATT-TATTGGCCCCTATCCCTCATCA
260 GTGCACACATGATGTGCGATGGGTGCTGGTAATTCACCC-TTATATTGGCCCCTATCCCTCATCA
**
15710086 AACCTCAAGAACTCACACTGCCTTAAAGAGGATTTGAGATTTTATAGGTTTGCTACCAGTAGCCA
324 AACCTCAAGAACTCACACCCCCTTAAAGAGGATTTGAGATTTTATAGGTTTGCTACCAGTAGCCA
* *
15710151 TTAAAGTGTCTAG-AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTCTCCACCTCGTGTTT
389 TTAAAGTGT-TAGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTCTCCACCTCGAGTTT
* * * *
15710215 TTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACGAGGATCACATCTACTAAATTTGGGGACA
453 TTAGCTGAATTGTTTAGTGCATGCCAATAAAAATACAAGGATCACATCTACCAAATTTGGGGACA
* * ** *
15710280 AAACTCTTTGT-AAAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTTGAAAATCGTAAAAAAT
518 AAACTCTTTCTAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTAAAAAAC
*
15710344 AGAAAACGGGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTAC
583 AGAAAACGGGTCATCTTGCCATGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTAC
15710409 AAGCCATAAAAATGAAATTGGCATGGCAGAAATATGAAGATGTGCTTGAACCCACCTACCACCCG
648 AAGCCATAAAAATGAAATTGGCATGGCAGAAATATGAAGATGTGCTTGAACCCACCTACCACCCG
* * * *
15710474 TTCGATCCCCAGCTTGCGCATCTGTCTCTCTGGTCGACTGAGCGTCCGCACGCTCGTTTTATGGG
713 TTCGATCCCCAGCTTACGCATCTGCCTCTCTGGTCGACTGAGCGTCCGCACACTCGTTTCATGGG
* *
15710539 CTGACTTAGGCATACAGAGTTTATCCCCAGTCTAAG
778 CTGACTTAGGCATACAGAGTTCATCCCCAGTATAAG
15710575 CATACGGAGT
Statistics
Matches: 743, Mismatches: 67, Indels: 7
0.91 0.08 0.01
Matches are distributed among these distances:
880 69 0.09
881 420 0.57
882 250 0.34
883 4 0.01
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (880 bp):
GCTTGCACATTCTGCCTCTCCGATCGACTGAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAGG
CATACAGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGAGTTTGAACCACG
GTGCACATGCTGGGCTCAGGCATGTGATGGTGCCACATATTTTTCACCCGAGGCACCATCGCCAG
AGCATCGCCAGAGAGCCTAACCGACGGCATTGGGGGTTCCGACGATTTGGGGGCACCAGGGGGTG
TGCACACATGATGTGCGATGGGTGCTGGTAATTCACCCTTATATTGGCCCCTATCCCTCATCAAA
CCTCAAGAACTCACACCCCCTTAAAGAGGATTTGAGATTTTATAGGTTTGCTACCAGTAGCCATT
AAAGTGTTAGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTCTCCACCTCGAGTTTTTA
GCTGAATTGTTTAGTGCATGCCAATAAAAATACAAGGATCACATCTACCAAATTTGGGGACAAAA
CTCTTTCTAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTAAAAAACAGA
AAACGGGTCATCTTGCCATGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAG
CCATAAAAATGAAATTGGCATGGCAGAAATATGAAGATGTGCTTGAACCCACCTACCACCCGTTC
GATCCCCAGCTTACGCATCTGCCTCTCTGGTCGACTGAGCGTCCGCACACTCGTTTCATGGGCTG
ACTTAGGCATACAGAGTTCATCCCCAGTATAAGATTGGATTGAATCAAGGGTAGCGGTAGCAGGA
TGGATAGCACACAGGGGAGACCAGACCGGTTCCCA
Found at i:15710578 original size:26 final size:26
Alignment explanation
Indices: 15710548--15710600 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15710538 GCTGACTTAG
* *
15710548 GCATACAGAGTTTATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
15710574 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
15710600 G
1 G
15710601 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:15710940 original size:26 final size:26
Alignment explanation
Indices: 15710891--15710943 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15710881 GTTGGCTTAG
* *
15710891 GCATACGGAGTTCATTCGATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
15710917 GCATACAGAGTTCATTCCCA-GTCTAA
1 GCATACAGAGTTCATT-CCATGTCTAA
15710943 G
1 G
15710944 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:15711582 original size:157 final size:158
Alignment explanation
Indices: 15711134--15711626 Score: 455
Period size: 157 Copynumber: 3.1 Consensus size: 158
15711124 AAGCATATGG
* *
15711134 AGTTCATTCCCAGTCTAAGATCAGACCCGACTGAGGGTTGCGATAGTAGGATCGATAGCACGTAG
1 AGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCG-TAGTAGGATCGATAGCACGCAG
* * * * * ** ** *
15711199 GGGGGACCGGGCTGAT-CCCTAGCTTGTGCATTCTGCCTCTTCGGTTGGTTGAGTGCCCACACA-
65 GGGGGACCGGGCCGATCCCCGA-CTTGCGCATTATGCCTCTCCGGCCGGTTGAGCACCCGCACAG
* * * *
15711262 C-CCTTTTCATGGGTTGGCTTACGCATAGGG
129 CTCATTTT-ATGGGTTGGCTTAGGCATACGA
** * * ** * *
15711292 AGTTCATT-CCATGTCTAAGCCCCAG-CCGGAATGAGGGTTGTGGTAGCGGGACCGACAGCACGC
1 AGTTCATTCCCA-GTCTAAG-ATCAGACCGGACTGAGGGTTG-CGTAGTAGGATCGATAGCACGC
* * * * * *
15711355 AGAGGGGGACTGGGCCAATCCCTGGCTTGCGCATTATGCCTCTCTGGCCGGTTCAGCACCCG-AT
63 AG-GGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGGCCGGTTGAGCACCCGCA-
* *
15711419 C-GCTCATTTTTTGGGTTGACTTAGGCATACGA
126 CAGCTCATTTTATGGGTTGGCTTAGGCATACGA
* * *
15711451 AGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTGCGCAGTAGGATCGATAGCACGCAGG
1 AGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGTAGTAGGATCGATAGCACGCAGG
* * * *
15711516 GGGGACCGGGCCGGTCCCCGACTTGCGCATTTTGCCTCTCCGGCCGGCTGAGCCCCCGCA-AGCT
66 GGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGGCCGGTTGAGCACCCGCACAGCT
**
15711580 CATTTCGTGGGTTGGCTTAGGCATAC-A
131 CATTTTATGGGTTGGCTTAGGCATACGA
**
15711607 GAGTTCATTCCTTGTCTAAG
1 -AGTTCATTCCCAGTCTAAG
15711627 CATACGAAGT
Statistics
Matches: 264, Mismatches: 58, Indels: 27
0.76 0.17 0.08
Matches are distributed among these distances:
156 1 0.00
157 95 0.36
158 67 0.25
159 91 0.34
160 10 0.04
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.25
Consensus pattern (158 bp):
AGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGTAGTAGGATCGATAGCACGCAGG
GGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGGCCGGTTGAGCACCCGCACAGCT
CATTTTATGGGTTGGCTTAGGCATACGA
Found at i:15711637 original size:26 final size:26
Alignment explanation
Indices: 15711600--15711652 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
15711590 GTTGGCTTAG
**
15711600 GCATACAGAGTTCATTCCTTGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
15711626 GCATAC-GAAGTTTATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
15711652 G
1 G
15711653 ATCAGACCGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15711751 original size:184 final size:183
Alignment explanation
Indices: 15711443--15711807 Score: 516
Period size: 184 Copynumber: 2.0 Consensus size: 183
15711433 GTTGACTTAG
* *
15711443 GCATACGAAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTGCGCAGTAGGATCGATAG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGCAGTAGGATCGATAG
* * * * * *
15711508 CACGCAGGGGGGACCGGGCCGGTCCCCGACTTGCGCATTTTGCCTCTCCGGCCGGCTGAGCCCCC
66 CACGCAGAGGGGACCAGGCCGATCCCCGACTTGCGCATTCTACCTCTCCGACCGGCTGAGCCCCC
* *
15711573 GCAAG-CTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCTTGTCTAA
131 GCAAGTC-CATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
* * *
15711626 GCATACGAAGTTTATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGGCAGTAGGATCGGTA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTG-CGCAGTAGGATCGATA
* * * *
15711691 GCACGTAGAGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGATCGGCTGAGCGCC
65 GCACGCAGAGGGGACCAGGCCGATCCCCGACTTGCGCATTCTACCTCTCCGACCGGCTGAGCCCC
* * **
15711756 CGCACGTCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
130 CGCAAGTCCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCT
15711808 GAGCCCCAGT
Statistics
Matches: 159, Mismatches: 21, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
183 45 0.28
184 113 0.71
185 1 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (183 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGCAGTAGGATCGATAG
CACGCAGAGGGGACCAGGCCGATCCCCGACTTGCGCATTCTACCTCTCCGACCGGCTGAGCCCCC
GCAAGTCCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
Found at i:15715779 original size:23 final size:23
Alignment explanation
Indices: 15715753--15715801 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
15715743 AAGAGGCCTT
15715753 TGAGGGATTGAAGAATGCTATTA
1 TGAGGGATTGAAGAATGCTATTA
15715776 TGAGGGATTGAAGAATGCTATTA
1 TGAGGGATTGAAGAATGCTATTA
15715799 TGA
1 TGA
15715802 AGGACCCCAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.35, C:0.04, G:0.31, T:0.31
Consensus pattern (23 bp):
TGAGGGATTGAAGAATGCTATTA
Found at i:15718371 original size:26 final size:26
Alignment explanation
Indices: 15718341--15718393 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15718331 GTTGACTTAG
*
15718341 GCATACACAGTTCATCCCCAGTCTAA
1 GCATACACAGTTCATCCCCAATCTAA
** *
15718367 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACACAGTTCATCCCCAATCTAA
15718393 G
1 G
15718394 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.30, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACACAGTTCATCCCCAATCTAA
Found at i:15718813 original size:159 final size:156
Alignment explanation
Indices: 15718367--15718869 Score: 455
Period size: 159 Copynumber: 3.2 Consensus size: 156
15718357 CCCAGTCTAA
* * * * *
15718367 GCATACGGAGTTCATTCCCA-ATCTAAGATCAGACCGGACCGAGGGTTGCGACAGTAGGATCTAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCAGACTGAGGGTTGCG-CAGCAGGATCGAT
* * * *
15718431 AGCACGCAA-GGGGGATCGGGCCAATCCCTGACTTACGTATTCTGCCTCTCCAACCTGCTGAGTG
64 AGCACGCAAGGGGGGATCGGG-CAGTCCCTGACTTACGCATTCTGCCTCTCCAGCCGGCTGAGTG
* * *
15718495 TCCGCAC-ATCTGTTTCATGGATTGGCTTAG
128 CCCGAACGCT-TGTTTCATGG-TTGGCTTAG
* ** * * * * *
15718525 GCATAGGGAGTTCATTCCATGTCTAAGCCCCA-ACCAGA-TCGAGGGTTGTGGTAGCGGGACCGG
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCAGACT-GAGGGTTG-CGCAGCAGGATCGA
* * * ** * * * * *
15718588 TAGCACGC-AGAGGGGGATCGGGCCGATCCCCGGCTTGTGCATTATGCCTTTTC-GACCGACTCA
63 TAGCACGCAAG-GGGGGATCGGGCAG-TCCCTGACTTACGCATTCTGCCTCTCCAG-CCGGCTGA
*
15718651 GTGCCCGAACGCTTGTTTCATGCGTTGACTTAG
125 GTGCCCGAACGCTTGTTTCATG-GTTGGCTTAG
* *
15718684 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGACCAAACTGAGGGTTGCAGCAGCAGGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCAGACTGAGGGTTGC-GCAGCAGGATCGAT
* * * *
15718748 AGCACGCAAGGGGGGATCGGGCTAGTCCCTGACTTACGGATTCTACCTCTCCAGTCGGTTGAGTG
64 AGCACGCAAGGGGGGATCGGGC-AGTCCCTGACTTACGCATTCTGCCTCTCCAGCCGGCTGAGTG
* *
15718813 CCCGTACGCTCGTTTCATGGGTTGGCTTAG
128 CCCGAACGCTTGTTTCAT-GGTTGGCTTAG
15718843 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
15718870 CATACGCAGT
Statistics
Matches: 268, Mismatches: 58, Indels: 37
0.74 0.16 0.10
Matches are distributed among these distances:
157 4 0.01
158 53 0.20
159 200 0.75
160 11 0.04
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCAGACTGAGGGTTGCGCAGCAGGATCGATAG
CACGCAAGGGGGGATCGGGCAGTCCCTGACTTACGCATTCTGCCTCTCCAGCCGGCTGAGTGCCC
GAACGCTTGTTTCATGGTTGGCTTAG
Found at i:15719082 original size:26 final size:26
Alignment explanation
Indices: 15719052--15719104 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15719042 GTTGACTTAG
15719052 GCATATGGAGTTCATCCCTAGTCTAA
1 GCATATGGAGTTCATCCCTAGTCTAA
*
15719078 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATATGGAGTTCATCCCTAGTCTAA
15719104 G
1 G
15719105 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCTAGTCTAA
Found at i:15720657 original size:26 final size:26
Alignment explanation
Indices: 15720620--15720671 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15720610 GTTGGCTTAG
*
15720620 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
15720646 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15720672 CATCGGACCG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15720853 original size:26 final size:26
Alignment explanation
Indices: 15720817--15720869 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15720807 GATGAGTTAG
*
15720817 GCATATAGAGTTCATCCCCAGTCTAA
1 GCATATAGAGTTCATCCCCAATCTAA
* *
15720843 GCATATGGAGTTCATTCCCAATCTAA
1 GCATATAGAGTTCATCCCCAATCTAA
15720869 G
1 G
15720870 ATCTGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATATAGAGTTCATCCCCAATCTAA
Found at i:15720915 original size:197 final size:197
Alignment explanation
Indices: 15720584--15720955 Score: 498
Period size: 197 Copynumber: 1.9 Consensus size: 197
15720574 TCCGGCCGGT
* * * *
15720584 TGAGCGCCTGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 TGAGCGCCCGCACGCTCGTTTCGTGGGATGGCTTAGGCATACAGAGTTCATCCCATGTCTAAGCA
* * *
15720649 TACGAAGTTCATTCCCAGTCTAACATCGGACCGAATCGAGGGTTGCGATAGCAGGATCAACAGCA
66 TACGAAGTTCATTCCCAATCTAACATCGGACCGAATCGAGGGTTGCGATAACAGGATCAACAACA
* * * *
15720714 CGCAGGTGGGATCAGGTCGATCCCCGGCTTGCGTATTCTGCCTCTTCGACCGACCTCTCCGGCTT
131 CGCAGGGGGGATCAGGCCGATCCCCAGCTTGCGCATTCTGCCTCTTCGACCGACCTCTCCGGCTT
15720779 AC
196 AC
* * *
15720781 TGAGTGCCCGCACGCTTGTTTCGTGGGATGAG-TTAGGCATATAGAGTTCATCCCCA-GTCTAAG
1 TGAGCGCCCGCACGCTCGTTTCGTGGGATG-GCTTAGGCATACAGAGTTCAT-CCCATGTCTAAG
* * * * * *
15720844 CATATGGAGTTCATTCCCAATCTAAGATCTGACCGGATCGAGGGTTGC-AGTAACAGGATCAGCA
64 CATACGAAGTTCATTCCCAATCTAACATCGGACCGAATCGAGGGTTGCGA-TAACAGGATCAACA
* *
15720908 ACACGCAGGGGGGATCGGGCCTATCCCCAGCTTGCGCATTCTGCCTCT
128 ACACGCAGGGGGGATCAGGCCGATCCCCAGCTTGCGCATTCTGCCTCT
15720956 CCGGCTGGCT
Statistics
Matches: 150, Mismatches: 22, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
196 1 0.01
197 145 0.97
198 4 0.03
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.25
Consensus pattern (197 bp):
TGAGCGCCCGCACGCTCGTTTCGTGGGATGGCTTAGGCATACAGAGTTCATCCCATGTCTAAGCA
TACGAAGTTCATTCCCAATCTAACATCGGACCGAATCGAGGGTTGCGATAACAGGATCAACAACA
CGCAGGGGGGATCAGGCCGATCCCCAGCTTGCGCATTCTGCCTCTTCGACCGACCTCTCCGGCTT
AC
Found at i:15721283 original size:159 final size:159
Alignment explanation
Indices: 15720916--15721504 Score: 487
Period size: 159 Copynumber: 3.7 Consensus size: 159
15720906 CAACACGCAG
* * * * *
15720916 GGGGGATCGGGCCTATCCCCAGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAACGCCCGCACGCC
1 GGGGGATCGGGCCTATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGTTGAGCGCCCGCACGCC
** ** * *
15720981 CGTTTCATGGGTAGGCTTAGGCATAGTGAGTTGGTTTCATGTCTAAGCCCCAGCCAGACCGAGGG
66 CGTTTCATGGGTAGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGG
* *
15721046 TTGTGGCAGCGGGACCAGTACTACGTAGA
131 TTGTGGCAGCGGGACCAGCACTACGTAAA
* * *
15721075 GGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCT-CTACCCGGTTGAGCACCCGCACGC
1 GGGGGATCGGGCCTATCCCCGGCTTGCGCATTCTGCCTCTCCGA-CCGGTTGAGCGCCCGCACGC
* * *
15721139 CCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAATCAGACTGAGG
65 CCGTTTCATGGGTAGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGG
* **
15721204 GTTGTGGCAGTGGGACTGGCAGC-ACGTAAA
130 GTTGTGGCAGCGGGACCAGCA-CTACGTAAA
* * * * * * * * * *
15721234 GGTGGATCGGGTCTACCCCCGGCTTGCACATTATGCCTCTCCGATCGGTTCAGCGCTCGAACGCT
1 GGGGGATCGGGCCTATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGTTGAGCGCCCGCACGCC
* * * * * *** *
15721299 CATTTCATGGGTCGACTTAGGCATAC-GAAGATCATTCCCA-ATCTAAG-ATTAGACCAGATCGA
66 CGTTTCATGGGTAGGCTTAGGCATACAG-AGTTCATT-CCATGTCTAAGCCCCA-ACCAGACCGA
** * **
15721361 GGGTTGTGCGGCAGCATCGA-TAG--C-ACGTAGG
128 GGGTTGT--GGCAGC-GGGACCAGCACTACGTAAA
** ** * * * * *
15721392 GGGGGATTAGGCC-AGTCCTTGGCTTGCACATTCTACCTCTCCGGCCGGCTGAGTGCCCGCACGC
1 GGGGGATCGGGCCTA-TCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGTTGAGCGCCCGCACGC
* * * **
15721456 TCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGC
65 CCGTTTCATGGGTAGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
15721505 ATACGGAGTT
Statistics
Matches: 342, Mismatches: 75, Indels: 26
0.77 0.17 0.06
Matches are distributed among these distances:
157 4 0.01
158 90 0.26
159 233 0.68
160 6 0.02
161 7 0.02
162 2 0.01
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (159 bp):
GGGGGATCGGGCCTATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGTTGAGCGCCCGCACGCC
CGTTTCATGGGTAGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGG
TTGTGGCAGCGGGACCAGCACTACGTAAA
Found at i:15721527 original size:26 final size:26
Alignment explanation
Indices: 15721477--15721529 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15721467 GTTGGCTTAG
* *
15721477 GCATATGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
15721503 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
15721529 G
1 G
15721530 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:15721723 original size:26 final size:26
Alignment explanation
Indices: 15721687--15721739 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15721677 GTTGACTTAG
15721687 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
15721713 GCATACGAAGTTCATTCCCAGTTTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
15721739 G
1 G
15721740 ATCGGATTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:15722043 original size:870 final size:855
Alignment explanation
Indices: 15720273--15722057 Score: 2164
Period size: 870 Copynumber: 2.1 Consensus size: 855
15720263 TGACTGAGCG
* * * * * *
15720273 CCCACATGCCCGTTTCATGCGTTGGCTTAGGCATAGGGAGTTTATTCCATGTCTAAGCCCTAGCC
1 CCCACACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACC
* * * * *
15720338 GGACCGGGGGTTGTGGTAGTGAGACTGGCAGCACGTAGAGGGGGATCGGGTCGATCCCCGACTTC
66 AGACCGAGGGTTGTGGCAGTGAGACTGGCAGCACGTAAAGGGGGATCGGGTCGACCCCCGACTTC
* * * * * *
15720403 CGCATTATGCCTCTCCGGTCGGCTCAGTGCCCGAAAGCTCGTTTCGTGGGTTGACTTAGGCATAC
131 CACATTATGCCTCTCCGATCGGCTCAGCGCCCGAAAGCTCATTTCATGGGTCGACTTAGGCATAC
* * ** *
15720468 GAAGTTCATTCCCAGTCTAAGATCAAACTGGACTGAGGGTTGTGACAGCAAGATCGACAGCCCGC
196 GAAGATCATTCCCAATCTAAGATCAAACCAGACTGAGGGTTGTGACAGCAAGATCGACAGCACGC
* * * * *
15720533 AGGGGGGATCGGACCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGGTTGAGCGCCTGCACG
261 AGGGGGGATAGGACCGATCCCTGGCTTGCACATTCTACCTCTCCGGCCGGCTGAGCGCCCGCACG
15720598 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTC
326 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTC
* *
15720663 CCAGTCTAACATCGGACCGAATCGAGGGTTGCGATAGCAGGATCAACAGCACGCAGGTGGGATCA
391 CCAATCTAACATCGGACCGAATCGAGGGTTGCGATAGCAGGATCAACAGCACGCAGGAGGGATCA
* * ** * * * *
15720728 GGTCGATCCCCGGCTTGCGTATTCTGCCTCTTCGACCGACCTCTCCGGCTTACTGAGTGCCCGCA
456 GGCCGATCCCCAGCTTGCACATTCTACCTCTCCGACAGACCTCTCCGGCTGACTGAGTGCCCGCA
* * * * * *
15720793 CGCTTGTTTCGTGGGATGAGTTAGGCATATAGAGTTCATCCCCAGTCTAAGCATATGGAGTTCAT
521 CGCTCGTTTCCTGGGATGACTTAGGCATAGAGAGTTCATCCCCAGTCTAAGCATACGAAGTTCAT
* * * *
15720858 TCCCAATCTAAGATCTGACCGGATCGAGGGTTGCAGTAACAGGATCAGCAACACGCAGGGGGGAT
586 TCCCAATCTAAGATCGGACCAGATCGAGGGTTGCAGT-A-AGGATCAGCAACACGCAGGGGCGAC
** *
15720923 CGGGCCTATCCCCAGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAACGCCCGCACGCCCGTTTCA
649 CGGGCAGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAACGCCCGCACGCCCATTTCA
* ** * *
15720988 TGGGTAGGCTTAGGCATAGTGAGTTGGTTTCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGC
714 TGGGTAGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGTGGC
** ** * * * *
15721053 AGCGGGACCAGTACTACGTAGAGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTA
779 AGCGGGACCACAACTACACAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCACGA
*
15721118 CCCGGTTGAGCA
844 CCCGGTTGAACA
* * *
15721130 CCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAATC
1 CCCACACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACC
* * * * * *
15721195 AGACTGAGGGTTGTGGCAGTGGGACTGGCAGCACGTAAAGGTGGATCGGGTCTACCCCCGGCTTG
66 AGACCGAGGGTTGTGGCAGTGAGACTGGCAGCACGTAAAGGGGGATCGGGTCGACCCCCGACTTC
* * *
15721260 CACATTATGCCTCTCCGATCGGTTCAGCGCTCGAACGCTCATTTCATGGGTCGACTTAGGCATAC
131 CACATTATGCCTCTCCGATCGGCTCAGCGCCCGAAAGCTCATTTCATGGGTCGACTTAGGCATAC
* * * *
15721325 GAAGATCATTCCCAATCTAAGATTAGACCAGA-TCGAGGGTTGTG-CGGC-AGCATCGATAGCAC
196 GAAGATCATTCCCAATCTAAGATCAAACCAGACT-GAGGGTTGTGACAGCAAG-ATCGACAGCAC
* * *
15721387 GTAGGGGGGGATTAGG-CC-AGTCCTTGGCTTGCACATTCTACCTCTCCGGCCGGCTGAGTGCCC
259 GCA-GGGGGGA-TAGGACCGA-TCCCTGGCTTGCACATTCTACCTCTCCGGCCGGCTGAGCGCCC
* *
15721450 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCATACGGAGTT
321 GCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTT
* *
15721515 CATTCCCAATCTAAGATCGGACCGAA-CTGAGGGTTGCGGTAGCAGCACCAATAGCAGGATCGAC
386 CATTCCCAATCTAACATCGGACCGAATC-GAGGG-T----T-GC-G-----ATAGCAGGATCAAC
*
15721579 AGCACGCAGAGAGGGA-CCGGCCCGATCCCCAGCTTGCACATTCTACCTCTCCGACA-AGCCTCT
438 AGCACGCAG-GAGGGATCAGG-CCGATCCCCAGCTTGCACATTCTACCTCTCCGACAGA-CCTCT
* *
15721642 CCGG-TCGGCTGAGCT-CCCGCACGCTCGTTTCCTGGGTTGACTTAGGCATACGA-AGTTCATCC
500 CCGGCT-GACTGAG-TGCCCGCACGCTCGTTTCCTGGGATGACTTAGGCATA-GAGAGTTCATCC
* * ** *
15721704 CCAGTCTAAGCATACGAAGTTCATTCCCAGTTTAAGATCGGATTAGATTGAGGGTTGTGACAGT-
562 CCAGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATCGGACCAGATCGAGGG-T-TG-CAGTA
* * *
15721768 AGGATC-GACAGCATGCAGGGGCGACCGGGCAGATCCCCAGCTTGCGCATTCTGCCTTTCCGG-T
624 AGGATCAG-CAACACGCAGGGGCGACCGGGCAGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCT
*
15721831 CGGCT-AAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
688 -GGCTGAA-CGCCCGCACGCCCATTTCATGGGTAGGCTTAGGCATAGGGAGTTCATTCCATGTCT
* *
15721895 AAGCCCCAACCAGACCGAGGGTTGTGGCAGCTGGACCGACAAC-ACACAGAGGGGGACCGGGTCG
751 AAGCCCCAACCAGACCGAGGGTTGTGGCAGCGGGACC-ACAACTACACAGAGGGGGACCGGGCCG
* * * *
15721959 ATCCTCGGCTTGCGCATTTTACCTCAACGA-TCGGTTGAACG
815 ATCCCCGGCTTGCGCATTCTACCTC-ACGACCCGGTTGAACA
* * * *
15722000 CCTACACGCTCGTTTCGTGGGTTGGATTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 CCCACACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
15722058 ATACGAAGTT
Statistics
Matches: 785, Mismatches: 111, Indels: 51
0.83 0.12 0.05
Matches are distributed among these distances:
855 2 0.00
856 17 0.02
857 340 0.43
858 4 0.01
862 1 0.00
863 2 0.00
864 1 0.00
869 31 0.04
870 373 0.48
871 8 0.01
872 2 0.00
873 4 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (855 bp):
CCCACACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACC
AGACCGAGGGTTGTGGCAGTGAGACTGGCAGCACGTAAAGGGGGATCGGGTCGACCCCCGACTTC
CACATTATGCCTCTCCGATCGGCTCAGCGCCCGAAAGCTCATTTCATGGGTCGACTTAGGCATAC
GAAGATCATTCCCAATCTAAGATCAAACCAGACTGAGGGTTGTGACAGCAAGATCGACAGCACGC
AGGGGGGATAGGACCGATCCCTGGCTTGCACATTCTACCTCTCCGGCCGGCTGAGCGCCCGCACG
CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTC
CCAATCTAACATCGGACCGAATCGAGGGTTGCGATAGCAGGATCAACAGCACGCAGGAGGGATCA
GGCCGATCCCCAGCTTGCACATTCTACCTCTCCGACAGACCTCTCCGGCTGACTGAGTGCCCGCA
CGCTCGTTTCCTGGGATGACTTAGGCATAGAGAGTTCATCCCCAGTCTAAGCATACGAAGTTCAT
TCCCAATCTAAGATCGGACCAGATCGAGGGTTGCAGTAAGGATCAGCAACACGCAGGGGCGACCG
GGCAGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAACGCCCGCACGCCCATTTCATG
GGTAGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGTGGCAG
CGGGACCACAACTACACAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCACGACC
CGGTTGAACA
Found at i:15722067 original size:26 final size:26
Alignment explanation
Indices: 15722030--15722082 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15722020 GTTGGATTAG
*
15722030 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGAAGTTCATTCCTA-GTCTAA
15722056 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
15722082 G
1 G
15722083 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:15722792 original size:26 final size:26
Alignment explanation
Indices: 15722742--15722794 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15722732 GTTGACTTAG
*
15722742 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
**
15722768 GCATACGGAGTTCATTTCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
15722794 G
1 G
15722795 ATTGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:15723236 original size:158 final size:158
Alignment explanation
Indices: 15722882--15723259 Score: 426
Period size: 158 Copynumber: 2.4 Consensus size: 158
15722872 ACCGACTGAG
* ** * * *
15722882 CGCCCGCACGCCCGTTTTATGGGTTGGCTTTGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
1 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAG
* ** * * * * *
15722947 CCGAACCGAGGGTTGTGGCAGTGGGACCGGTAGCATGCATAGGGGGATCGGGTCGATCCCTGGCT
66 CCGAACCGACGGTTGTGGCAGCAGGACCGATAGCA-GCATAGGGGGATCAGATCGATCCCCGACT
* * *
15723012 TGCGCGTTATGCCTCTCTGGTCGGCTTAG
130 TGCGCATTATGCCTCTCCGGTCGGCTTAA
* * * * *
15723041 CACCCGAACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-TAGTCTAAG-ATCA
1 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCACCA
*
15723104 GACCGAACCGACGGTTGTGGCAGCAGGATCGATAGCA-CATAGGGGGGATCAGATC-AGTCCCCG
65 G-CCGAACCGACGGTTGTGGCAGCAGGACCGATAGCAGCATA-GGGGGATCAGATCGA-TCCCCG
*
15723167 ACTTGCGCATTCTGCCTCTCCGG-CTGG-TTGAA
127 ACTTGCGCATTATGCCTCTCCGGTC-GGCTT-AA
*
15723199 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGTGTTCATTCCATGTCTAAGCA
1 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
15723260 TACGGAGTTC
Statistics
Matches: 182, Mismatches: 29, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
157 8 0.04
158 94 0.52
159 80 0.44
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.25
Consensus pattern (158 bp):
CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAG
CCGAACCGACGGTTGTGGCAGCAGGACCGATAGCAGCATAGGGGGATCAGATCGATCCCCGACTT
GCGCATTATGCCTCTCCGGTCGGCTTAA
Found at i:15723471 original size:26 final size:26
Alignment explanation
Indices: 15723441--15723493 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15723431 GTTGACTTAG
15723441 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
15723467 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15723493 G
1 G
15723494 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15725144 original size:26 final size:26
Alignment explanation
Indices: 15725106--15725159 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
15725096 TGGTTTGACT
15725106 TAGGCATACGGAGTTCATCCCCAGTC
1 TAGGCATACGGAGTTCATCCCCAGTC
* *
15725132 TAGGCATATGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATCCCCAGTC
15725158 TA
1 TA
15725160 AGATCAGACC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATCCCCAGTC
Found at i:15725490 original size:159 final size:157
Alignment explanation
Indices: 15725132--15725504 Score: 392
Period size: 159 Copynumber: 2.4 Consensus size: 157
15725122 ATCCCCAGTC
* * * * * *
15725132 TAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGATGCGACAGTAGGATCG
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGACAGCAGGACCG
* * * ***
15725197 ACAGCACGCAGGGGGGCCAGGCCGATCCTCAGCTTGCACATTTTGCCTCTCCGGTCGGCTGAGCG
66 ACAGCACGCAGGGGGGCCAGGACGATCCTCAGCTTACACATTCTGCCTCTCCAACCGGCTGAGCG
* *
15725262 CCCGTACACCCGTTTCATGGGTTGGCT
131 CCCGCACACCCATTTCATGGGTTGGCT
* * * ** * * *
15725289 TTGGCATAGGGAGGTCATT-CCATGTCTAAGCCCTAG-CTGGACCGAGGGTTGTGGCAGCGGGAC
1 TAGGCATACGGAGTTCATTCCCA-GTCTAAGATC-AGACCGGACCGAGGGTTGTGACAGCAGGAC
** * *
15725352 CGACAGCACGCAGAGGGGGACTGGGACGATCCTC-GACTTACGCATTCTGCCTCTCCAACCGGTT
64 CGACAGCACGCAG-GGGGG-CCAGGACGATCCTCAG-CTTACACATTCTGCCTCTCCAACCGGCT
* *
15725416 GAGCGCCCGCACACTCATTTCGTGGGTTGGCT
126 GAGCGCCCGCACACCCATTTCATGGGTTGGCT
* * * *
15725448 TAGGTATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGGGGGTTGTGACAG
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGACAG
15725505 TAAGACTAGT
Statistics
Matches: 171, Mismatches: 38, Indels: 12
0.77 0.17 0.05
Matches are distributed among these distances:
156 3 0.02
157 56 0.33
158 9 0.05
159 100 0.58
160 3 0.02
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.21
Consensus pattern (157 bp):
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGACAGCAGGACCG
ACAGCACGCAGGGGGGCCAGGACGATCCTCAGCTTACACATTCTGCCTCTCCAACCGGCTGAGCG
CCCGCACACCCATTTCATGGGTTGGCT
Found at i:15726002 original size:26 final size:26
Alignment explanation
Indices: 15725966--15726018 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15725956 GTTGGCTTAG
15725966 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15725992 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15726018 G
1 G
15726019 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15727061 original size:26 final size:26
Alignment explanation
Indices: 15727031--15727083 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15727021 GTTGGCTTAG
*
15727031 GCATACAGAGTTCGTT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
15727057 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15727083 G
1 G
15727084 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15727821 original size:26 final size:26
Alignment explanation
Indices: 15727766--15727833 Score: 82
Period size: 26 Copynumber: 2.6 Consensus size: 26
15727756 CCCGGCTTGT
*
15727766 GCATTCTGCCTCTCCGACCGACTTAT
1 GCATTCTGCCTCTCCGACCGACTTAC
* ** *
15727792 GCATTCTGCCTCTCCGACTGGTTTGC
1 GCATTCTGCCTCTCCGACCGACTTAC
*
15727818 GCATTCTACCTCTCCG
1 GCATTCTGCCTCTCCG
15727834 GCCGGCTAAG
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 36 1.00
ACGTcount: A:0.12, C:0.38, G:0.18, T:0.32
Consensus pattern (26 bp):
GCATTCTGCCTCTCCGACCGACTTAC
Found at i:15728070 original size:26 final size:26
Alignment explanation
Indices: 15728034--15728086 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15728024 GTTGGCTTAG
15728034 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATATGGAGTTCATTCCCA-GTCTAA
15728060 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
15728086 G
1 G
15728087 ATTTTAAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:15729124 original size:159 final size:160
Alignment explanation
Indices: 15728781--15729286 Score: 384
Period size: 159 Copynumber: 3.2 Consensus size: 160
15728771 CCTAGTCTAA
* * * ** * * *
15728781 GCATACGGAGTTCATTCCCAGTCTAAG-ATCAGACCGGACTAAGGGTTACGGCAGCA-GGATCAG
1 GCATATGGAGTTCATTCCCAGTCTAAGCACCAGATCGGACCGAGGGTTGCGACAGCAGGGA-CAA
* * * * * * * * * * * * * * *
15728844 TAGCATGCA-GAGGGGATCGGGCCAATCCCAGGCTTTACGAATTCTACCCCTCCGGTCGGCTGAG
65 CAGCACGCATGGGGGGACCGGGCCGATCCCCGACTTGA-GCATTATGCCTCTCCGGCCGACTCAG
** *
15728908 CGCCCGCACGCCCGTTTCGTGGGTTGGCTTAG
129 CGCCCAAACGCTCGTTTCGTGGGTTGGCTTAG
* * * * **
15728940 GCATA-GAGAGTTCATT-CCATTTCTAAGCCCCAGCT-GGACCGAGGGTTGTGGTAGC-GGGACT
1 GCATATG-GAGTTCATTCCCA-GTCTAAGCACCAGATCGGACCGAGGGTTGCGACAGCAGGGAC-
** * * * *
15729001 AACAGCACGCA-GAGGGGGATTGGGTCGATCCCCGACTTGCGCATTATGCCTCTCCGGCTGGCTC
63 AACAGCACGCATG-GGGGGACCGGGCCGATCCCCGACTTGAGCATTATGCCTCTCCGGCCGACTC
* * *
15729065 AGTGCCCAAACGCTCGTTTCGTAGGTTGACTTAG
127 AGCGCCCAAACGCTCGTTTCGTGGGTTGGCTTAG
*** * * *
15729099 GCATATGGAGTTCATTCCCAGTCTAAG-ATTGGATCGGACCGAGGGTTGCGACAGCAGGGTCGAT
1 GCATATGGAGTTCATTCCCAGTCTAAGCACCAGATCGGACCGAGGGTTGCGACAGCAGGGACAAC
* * * * * *
15729163 GGCACGCATGGGGGGACCGGGCCGATCCCTGGCTTGAGCATTCTGCCTCTCTGGCCGACTGAGCG
66 AGCACGCATGGGGGGACCGGGCCGATCCCCGACTTGAGCATTATGCCTCTCCGGCCGACTCAGCG
* *
15729228 CCCACACACTCGTTTCGTGGGTTGGCTTAG
131 CCCAAACGCTCGTTTCGTGGGTTGGCTTAG
15729258 GCATATGGAGTTCA-TCTCCAGTCTAAGCA
1 GCATATGGAGTTCATTC-CCAGTCTAAGCA
15729287 TACGGAGTTC
Statistics
Matches: 271, Mismatches: 63, Indels: 25
0.75 0.18 0.07
Matches are distributed among these distances:
158 9 0.03
159 230 0.85
160 32 0.12
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.23
Consensus pattern (160 bp):
GCATATGGAGTTCATTCCCAGTCTAAGCACCAGATCGGACCGAGGGTTGCGACAGCAGGGACAAC
AGCACGCATGGGGGGACCGGGCCGATCCCCGACTTGAGCATTATGCCTCTCCGGCCGACTCAGCG
CCCAAACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:15729294 original size:26 final size:26
Alignment explanation
Indices: 15729258--15729310 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15729248 GTTGGCTTAG
*
15729258 GCATATGGAGTTCA-TCTCCAGTCTAA
1 GCATACGGAGTTCATTC-CCAGTCTAA
15729284 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15729310 G
1 G
15729311 ATCAGACTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15729626 original size:502 final size:501
Alignment explanation
Indices: 15728737--15729840 Score: 1270
Period size: 502 Copynumber: 2.2 Consensus size: 501
15728727 CGCACGTTCC
* * ** * *
15728737 TTTCGTGGGTTGACTTAGACATACAAAGTTTA-TCCCTAGTCTAAGCATACGGAGTTCATTCCCA
1 TTTCATGGGTTGGCTTAGACATACGGAGTTCATTCCAT-GTCTAAGCATACGGAGTTCATTCCCA
* * * * * * * * * *
15728801 GTCTAAGATCAGACCGGACT-AAGGGTTACGGCAGCAGGATC-AGTAGCATGCAGAGGGGATCGG
65 GTCTAAGATCAGACCAGA-TAAAGGGTTACGGTAGCATGATCGA-CAGTACGTAGGGGGGACCGA
* * * * * * * **** * ** ** *
15728864 GCCAATCCCAGGCTTTACGAATTCTACCCCTCCGGTCGGCTGAGCGCCCGCACGCCCG-TTTCGT
128 GCCGATCCCCGAC-TTGCGCATTCTGCCTCTCTAACCGACTGAGCGCCTACAC-ATCGATTTTGT
* ** * *
15728928 GGGTTGGCTTAGGCATAGAGAGTTCATTCCATTTCTAAGCCCCAGCTGGACCGAGGGTTGTGGTA
191 GGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTATGGTA
* ** * * *
15728993 GCGGGACTAACAGCACGCAGAGGGGGATTGGGTCGATCCCCGACTTGCGCATTATGCCTCTCCGG
256 GCAGGACTAACAGCACGCAGAGGGGGACCGAGTCGATCCCAGACTTGCGCATTATGCCTCTCCGA
* * * * *
15729058 CTGGCTCAGTGCCCAAACGCTCGTTTCGTAGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCT
321 CCGACTCAGCGCCCAAACACTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
** * * * * ** * *
15729123 AAGATTGGATCGGACCGAGGGTTGCGACAGCAGGGTCGATGGCACGCATGGGGGGACCGGGCC-G
386 AAGATCAGACCGAACCGAGGGTTACGACAGCAGGATCGACAGCACACAT-AGGGGACCGGGCCAG
* * *
15729187 ATCCCTGGCTTGAGCATTCTGCCTCTCTGGCCGACTGAGCGCCCACACACTCG
450 -TCCCTGGCTTGAGCATTCTACCTCTCCGGCCGACTGAACGCCCACACACTCG
* * *
15729240 TTTCGTGGGTTGGCTTAGGCATATGGAGTTCATCTCCA-GTCTAAGCATACGGAGTTCATTCCCA
1 TTTCATGGGTTGGCTTAGACATACGGAGTTCAT-TCCATGTCTAAGCATACGGAGTTCATTCCCA
* * *
15729304 GTCTAAGATCAGACTAGATCAAGGGTTGCGGTAGCATGATCGACAGTACGTAGGGGGGACCGAGC
65 GTCTAAGATCAGACCAGATAAAGGGTTACGGTAGCATGATCGACAGTACGTAGGGGGGACCGAGC
15729369 CGATCCCCGACTTGCGCATTCTGCCTCTCTAACCGACTGAGCGCCTACACATCGATTTTGTGGGT
130 CGATCCCCGACTTGCGCATTCTGCCTCTCTAACCGACTGAGCGCCTACACATCGATTTTGTGGGT
*
15729434 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTATGGTAGCAG
195 TGGCTTAGGCATAGAGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTATGGTAGCAG
** *
15729499 GAC-AGGTAGCACGTAGAGGGGGACCGAGTCGATCTCCAG-CTTGCGCATTATGCCTCTCCGACC
260 GACTA-ACAGCACGCAGAGGGGGACCGAGTCGATC-CCAGACTTGCGCATTATGCCTCTCCGACC
** * * *
15729562 GACTCAGCGCCTGAACACTCGTTTCGTGGGTTGACTTAGGCATGCGGAGTTCATTCCTAGTCTAA
323 GACTCAGCGCCCAAACACTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * *
15729627 GATCAGACCGAACTGAGGGTTACGGTAGCAGGATCGACAGCACACATAGGGGATCGGGTCAGTCC
388 GATCAGACCGAACCGAGGGTTACGACAGCAGGATCGACAGCACACATAGGGGACCGGGCCAGTCC
* * ** * *
15729692 CTGGCTTGTGCATTCTACCTTTCCGGCCGGTTGAACGCCCGCACGCTCG
453 CTGGCTTGAGCATTCTACCTCTCCGGCCGACTGAACGCCCACACACTCG
15729741 TTTCATGGGTTGGCTTAGACATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAG
1 TTTCATGGGTTGGCTTAGACATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAG
15729806 TCTAAGATCAGACCAGATAAAGGGTTACGGTAGCA
66 TCTAAGATCAGACCAGATAAAGGGTTACGGTAGCA
15729841 GGACCAGTAG
Statistics
Matches: 501, Mismatches: 91, Indels: 20
0.82 0.15 0.03
Matches are distributed among these distances:
500 4 0.01
501 145 0.29
502 236 0.47
503 112 0.22
504 1 0.00
505 3 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (501 bp):
TTTCATGGGTTGGCTTAGACATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAG
TCTAAGATCAGACCAGATAAAGGGTTACGGTAGCATGATCGACAGTACGTAGGGGGGACCGAGCC
GATCCCCGACTTGCGCATTCTGCCTCTCTAACCGACTGAGCGCCTACACATCGATTTTGTGGGTT
GGCTTAGGCATAGAGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTATGGTAGCAGG
ACTAACAGCACGCAGAGGGGGACCGAGTCGATCCCAGACTTGCGCATTATGCCTCTCCGACCGAC
TCAGCGCCCAAACACTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
CAGACCGAACCGAGGGTTACGACAGCAGGATCGACAGCACACATAGGGGACCGGGCCAGTCCCTG
GCTTGAGCATTCTACCTCTCCGGCCGACTGAACGCCCACACACTCG
Found at i:15729646 original size:159 final size:156
Alignment explanation
Indices: 15729284--15729669 Score: 424
Period size: 159 Copynumber: 2.4 Consensus size: 156
15729274 TCCAGTCTAA
* * * * *
15729284 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGATCAAGGGTTGCGGTAGCATGATCGACA
1 GCATGCGGAGTTCATT-CCAGTCTAAGATCAGAC-CGAACAAGGGTTACGGTAGCAGGATCGACA
* * * * *
15729349 GTACGTAGGGGGGACCGAGCCGATCCCCGACTTGCGCATTCTGCCTCTCTAACCGACTGAGCGCC
64 GCACGTAGGGGGGACCGAGCCGATCCCAGACTTGCGCATTATGCCTCTCCAACCGACTCAGCGCC
* *
15729414 TACACATCGATTTTGTGGGTTGGCTTAG
129 TACACATCGATTTCGTGGGTTGACTTAG
** * *
15729442 GCATAG-GGAGTTCATTCCATGTCTAAGCCCCAG-CCAGACCAAGGGTTATGGTAGCAGGA-CAG
1 GCAT-GCGGAGTTCATTCCA-GTCTAAG-ATCAGACC-GAACAAGGGTTACGGTAGCAGGATC-G
** * *
15729504 GTAGCACGTAGAGGGGGACCGAGTCGATCTCCAG-CTTGCGCATTATGCCTCTCCGACCGACTCA
61 ACAGCACGTAG-GGGGGACCGAGCCGATC-CCAGACTTGCGCATTATGCCTCTCCAACCGACTCA
15729568 GCGCCTGA-ACACTCG-TTTCGTGGGTTGACTTAG
124 GCGCCT-ACACA-TCGATTTCGTGGGTTGACTTAG
*
15729601 GCATGCGGAGTTCATTCCTAGTCTAAGATCAGACCGAACTGAGGGTTACGGTAGCAGGATCGACA
1 GCATGCGGAGTTCATTCC-AGTCTAAGATCAGACCGAAC-AAGGGTTACGGTAGCAGGATCGACA
15729666 GCAC
64 GCAC
15729670 ACATAGGGGA
Statistics
Matches: 188, Mismatches: 26, Indels: 27
0.78 0.11 0.11
Matches are distributed among these distances:
157 4 0.02
158 57 0.30
159 118 0.63
160 9 0.05
ACGTcount: A:0.23, C:0.26, G:0.28, T:0.23
Consensus pattern (156 bp):
GCATGCGGAGTTCATTCCAGTCTAAGATCAGACCGAACAAGGGTTACGGTAGCAGGATCGACAGC
ACGTAGGGGGGACCGAGCCGATCCCAGACTTGCGCATTATGCCTCTCCAACCGACTCAGCGCCTA
CACATCGATTTCGTGGGTTGACTTAG
Found at i:15729790 original size:26 final size:26
Alignment explanation
Indices: 15729760--15729811 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15729750 TTGGCTTAGA
15729760 CATACGGAGTTCATT-CCATGTCTAAG
1 CATACGGAGTTCATTCCCA-GTCTAAG
15729786 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
15729812 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:15731047 original size:26 final size:26
Alignment explanation
Indices: 15731017--15731069 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15731007 GTTGACTTAG
*
15731017 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
15731043 GCATACAGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
15731069 G
1 G
15731070 ATTGAACCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:15731745 original size:26 final size:26
Alignment explanation
Indices: 15731715--15731767 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15731705 GTTGACTTAG
15731715 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
15731741 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15731767 G
1 G
15731768 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15731768 original size:196 final size:197
Alignment explanation
Indices: 15731426--15731799 Score: 502
Period size: 196 Copynumber: 1.9 Consensus size: 197
15731416 GGATCAACGA
* * * *
15731426 CACGCAAGGGGGGATCGAGCCGGTCCTCGGCTTGCACATTTTGCCTCTCCGATCGACTGAGCACC
1 CACGCAAGGGGGGATCGAGCCGATCCTCGGCTTACACATTCTGCCTCTCCGACCGACTGAGCACC
* * *
15731491 CGTACGCTCATTTCATGGGTTCGCTTTGGCATACAGAGTTCATTCAATGTCTAAGCATACGGAGT
66 CGTACACTCATTTCATGGGTTCGCTTAGGCATACAGAGTTCATCCAATGTCTAAGCATACGGAGT
* * *
15731556 TCATTCCCAATCTAAGATTAGACTGGATTGAAGGTTGCGACAGTAGGACCAACAGCAGGATCTAC
131 TCATTCCCAATCTAAGATCAGACTGGATCGAAGGTTACGACAGTAGGACCAACAGCAGGATCTAC
15731621 AG
196 AG
* * * * ** *
15731623 CACGCAA-GGGGGATGGGGTCGATCCTCGGCTTACGCATTCTGCCTCTCCGACCGGTTGAGCGCC
1 CACGCAAGGGGGGATCGAGCCGATCCTCGGCTTACACATTCTGCCTCTCCGACCGACTGAGCACC
* * *
15731687 CGTACACTCGTTTCATGGGTT-GACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACGGA
66 CGTACACTCATTTCATGGGTTCG-CTTAGGCATACAGAGTTCAT-CCAATGTCTAAGCATACGGA
* * *
15731750 GTTCATTCCTAGTCTAAGATCAGACTGGATCGAGGGTTACGACAGTAGGA
129 GTTCATTCCCAATCTAAGATCAGACTGGATCGAAGGTTACGACAGTAGGA
15731800 TCGGTAGCAC
Statistics
Matches: 152, Mismatches: 23, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
195 1 0.01
196 142 0.93
197 9 0.06
ACGTcount: A:0.23, C:0.26, G:0.27, T:0.25
Consensus pattern (197 bp):
CACGCAAGGGGGGATCGAGCCGATCCTCGGCTTACACATTCTGCCTCTCCGACCGACTGAGCACC
CGTACACTCATTTCATGGGTTCGCTTAGGCATACAGAGTTCATCCAATGTCTAAGCATACGGAGT
TCATTCCCAATCTAAGATCAGACTGGATCGAAGGTTACGACAGTAGGACCAACAGCAGGATCTAC
AG
Found at i:15732290 original size:26 final size:27
Alignment explanation
Indices: 15732249--15732303 Score: 85
Period size: 26 Copynumber: 2.1 Consensus size: 27
15732239 CATGGGTTGA
15732249 CTTAGGCATACAGAGTTCATCCCCAGT
1 CTTAGGCATACAGAGTTCATCCCCAGT
* *
15732276 CTTA-GCATACGGAGTTCATTCCCAGT
1 CTTAGGCATACAGAGTTCATCCCCAGT
15732302 CT
1 CT
15732304 AAGATCGGAC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (27 bp):
CTTAGGCATACAGAGTTCATCCCCAGT
Found at i:15732600 original size:539 final size:538
Alignment explanation
Indices: 15731456--15732614 Score: 1344
Period size: 539 Copynumber: 2.1 Consensus size: 538
15731446 CGGTCCTCGG
* * * * * * * *
15731456 CTTGCACATTTTGCCTCTCCGATCGACTGAGCACCCGTACGCTCATTTCATGGGTTCGCTTTGGC
1 CTTGCGCATTATGCCTCTCCAACCGACTCAGCGCCCGCACGCTCATTTCATGGGTT-GCTTAGGC
* * * * * *
15731521 ATACAGAGTTCATTCAATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATTAGACTGGATTG
65 ATACGGAGTTCATTCCATGTATAAGCATACAGAGTTCATTCCCAATCTAAGATCAGACTGGATCG
* * * *
15731586 AAGGTTGCGACAGTAGGACCAACAGCAGGATCTACAGCACGCAAGGGGGATGGGGTCGATCCTCG
130 AAGGTTGCGACAGTAGCACCAACAGCAGGATCGACAGCACGCAAGGGGGATCGGGTCGATCCCCG
* * ** * *
15731651 GCTTACGCATTCTGCCTCTCCGACCGGTTGAGCGCCCGTACACTCGTTTCATGGGTTGACTTAGG
195 ACTTACACATTCTGCCTCTCCGACCGACTGAGCGCCCGCACACTCATTTCATGGGTTGACTTAGG
* * * *
15731716 CATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGACTGGATC
260 CATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTCGAAC
* ** * **
15731781 GAGGGTTACGACAGTAGGATCGGTAGCACGCAGGGGGGACCGAGCTGATCCCTGACTTGTGCATT
325 GAGGGTTACGACAGCAGGATCGACAGCACGCAGGGGGGACCAAGCTGATCCCTGACTTACGCATT
* * * * * *
15731846 CTACCTCTCCGATTGGCTGAGCACTCGCATGCTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTT
390 CTACCTCTCCGATCGACTGAGCACCCACACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTT
* * * **
15731911 CATTCCATGTCTAAACCCTAGCCAGACTGAGGGTTGTGGTAGGAGGACCGGTAGCACGCAGAGAG
455 CATTCCATGTCTAAACCCTAGCCAGACCGAGGGTTGTGGAACGAGGACCGACAGCACGCAGAGAG
*
15731976 GGACCGGGCCAATCCCCAA
520 GGACCGAGCCAATCCCCAA
* * * * * * *
15731995 CTTGTGCATTCTGCCTCTCCAACCGACTGAGCGTCCGCACCCTCGTTTCATGGGTTGGCATAGGC
1 CTTGCGCATTATGCCTCTCCAACCGACTCAGCGCCCGCACGCTCATTTCATGGGTT-GCTTAGGC
*
15732060 ATACGGAGTTCATTCCATGTATAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGA-TCGGATC
65 ATACGGAGTTCATTCCATGTATAAGCATACAGAGTTCATTCCCAATCTAAGATCAGACT-GGATC
* ** * **
15732124 GAGGGTTGCGGTAGTAGCACCAGCATTAGGATCGACAGCACGC-AGAGGGGATCGGGTCGATCCC
129 GAAGGTTGCGACAGTAGCACCAACAGCAGGATCGACAGCACGCAAG-GGGGATCGGGTCGATCCC
* * * * * *
15732188 CGACTTGCATATTCTGCCTCTCCGATCGACTGAGTGCTCGCACGCTCATTTCATGGGTTGACTTA
193 CGACTTACACATTCTGCCTCTCCGACCGACTGAGCGCCCGCACACTCATTTCATGGGTTGACTTA
* *
15732253 GGCATACAGAGTTCATCCCCAGTCTTAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC-CGA
258 GGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTCGA
* * * *
15732317 ACGGAGGGTTGC-AGTAGCAGGATCGACAGCACGCAGGGGGGATCAAGAC-GATCTCC-GGCTTA
323 AC-GAGGGTTACGA-CAGCAGGATCGACAGCACGCAGGGGGGACCAAG-CTGATC-CCTGACTTA
* * * * *
15732379 CGCATTCTGCCTCTCCGATCGATTGAGCGCCCACACGCCCGTTTTATGGGTTGGCTTCGGCATAG
384 CGCATTCTACCTCTCCGATCGACTGAGCACCCACACGCCCGTTTCATGGGTTGGCTTAGGCATAG
*
15732444 GGAGTTCATTCCATGTCTAAGCCCTAGCCAGACCGAGGGTTGTGGCAACG-GGACCGACAGCACG
449 GGAGTTCATTCCATGTCTAAACCCTAGCCAGACCGAGGGTTGTGG-AACGAGGACCGACAGCACG
* * * * **
15732508 TAGAGGGGGACCGAGCCGATCCTCGG
513 CAGAGAGGGACCGAGCCAATCCCCAA
* * * * * * *
15732534 CTTGCGCATTATGGCTCTTCAGCC-AGCTCAGTGCCCGCGCGCTCATTTCGTTGGTTGACTTAGG
1 CTTGCGCATTATGCCTCTCCAACCGA-CTCAGCGCCCGCACGCTCATTTCATGGGTTG-CTTAGG
15732598 CATACGGAGTTCATTCC
64 CATACGGAGTTCATTCC
15732615 CAGTTTAAGA
Statistics
Matches: 515, Mismatches: 96, Indels: 18
0.82 0.15 0.03
Matches are distributed among these distances:
538 9 0.02
539 501 0.97
540 5 0.01
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.24
Consensus pattern (538 bp):
CTTGCGCATTATGCCTCTCCAACCGACTCAGCGCCCGCACGCTCATTTCATGGGTTGCTTAGGCA
TACGGAGTTCATTCCATGTATAAGCATACAGAGTTCATTCCCAATCTAAGATCAGACTGGATCGA
AGGTTGCGACAGTAGCACCAACAGCAGGATCGACAGCACGCAAGGGGGATCGGGTCGATCCCCGA
CTTACACATTCTGCCTCTCCGACCGACTGAGCGCCCGCACACTCATTTCATGGGTTGACTTAGGC
ATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTCGAACG
AGGGTTACGACAGCAGGATCGACAGCACGCAGGGGGGACCAAGCTGATCCCTGACTTACGCATTC
TACCTCTCCGATCGACTGAGCACCCACACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTC
ATTCCATGTCTAAACCCTAGCCAGACCGAGGGTTGTGGAACGAGGACCGACAGCACGCAGAGAGG
GACCGAGCCAATCCCCAA
Found at i:15732641 original size:159 final size:159
Alignment explanation
Indices: 15732276--15732773 Score: 348
Period size: 159 Copynumber: 3.1 Consensus size: 159
15732266 CATCCCCAGT
* * * ** * * * *
15732276 CTTA-GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACGGAGGGTTGCAGTAGCAGGAT
1 CTTAGGCATACGGAGTTCATTCCCAGTTTAAGATCGGATCGGATTGAGGGTTGCAGCAACAAGAC
* * * * * * * *
15732340 CGACAGCACGCAG-GGGGGATCAAGACGAT-CTCCGGCTTACGCATTCTGCCTCTC-CGATCGAT
66 CGACAGCACGCAGAGGGGGACCGAGCCGATCCT-CGGCTTGCGCATTATGCCTCTCTC-AGCCAC
* * * * * *
15732402 TGAGCGCCCA-CACGCCCGTTTTATGGGTTGG
129 TCAGTG-CCAGCACGCTCATTTCATGGGTTAG
* * * * ** * * ** ** **
15732433 CTTCGGCATAGGGAGTTCATT-CCATGTCTAAG-CCCTAGCCAGACCGAGGGTTGTGGCAACGGG
1 CTTAGGCATACGGAGTTCATTCCCA-GTTTAAGATCGGA-TCGGATTGAGGGTTGCAGCAACAAG
* *
15732496 ACCGACAGCACGTAGAGGGGGACCGAGCCGATCCTCGGCTTGCGCATTATGGCTCT-TCAGCCAG
64 ACCGACAGCACGCAGAGGGGGACCGAGCCGATCCTCGGCTTGCGCATTATGCCTCTCTCAGCCA-
* * * *
15732560 CTCAGTGCCCGCGCGCTCATTTCGTTGGTT-G
128 CTCAGTGCCAGCACGCTCATTTCATGGGTTAG
*
15732591 ACTTAGGCATACGGAGTTCATTCCCAGTTTAAGATCGGATCGGATTGAGGGTTGCAGCAGCAAGA
1 -CTTAGGCATACGGAGTTCATTCCCAGTTTAAGATCGGATCGGATTGAGGGTTGCAGCAACAAGA
* * * * * * * * * * * *
15732656 TCGACAGCATGCAGGGGGGGACCGAGTCGATCTTCTGCTTGTGCATTCTGCCTCTCTGATCGATT
65 CCGACAGCACGCAGAGGGGGACCGAGCCGATCCTCGGCTTGCGCATTATGCCTCTCTCAGCCACT
* *
15732721 GAGTGCCAGCACGCTCGTTTCATGGGTTAG
130 CAGTGCCAGCACGCTCATTTCATGGGTTAG
15732751 CTTAGGCATACGGAGTTCATTCC
1 CTTAGGCATACGGAGTTCATTCC
15732774 ATGTCTAAGC
Statistics
Matches: 260, Mismatches: 68, Indels: 24
0.74 0.19 0.07
Matches are distributed among these distances:
157 8 0.03
158 58 0.22
159 182 0.70
160 12 0.05
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (159 bp):
CTTAGGCATACGGAGTTCATTCCCAGTTTAAGATCGGATCGGATTGAGGGTTGCAGCAACAAGAC
CGACAGCACGCAGAGGGGGACCGAGCCGATCCTCGGCTTGCGCATTATGCCTCTCTCAGCCACTC
AGTGCCAGCACGCTCATTTCATGGGTTAG
Found at i:15732786 original size:26 final size:26
Alignment explanation
Indices: 15732756--15732808 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15732746 GTTAGCTTAG
*
15732756 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
15732782 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15732808 G
1 G
15732809 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15733084 original size:515 final size:502
Alignment explanation
Indices: 15732198--15733138 Score: 1097
Period size: 515 Copynumber: 1.8 Consensus size: 502
15732188 CGACTTGCAT
15732198 ATTCTGCCTCTCCGATCGACTGAGTGCTCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGA
1 ATTCTGCCTCTCCGATCGACTGAGTGCTCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGA
* * * *
15732263 GTTCATCCCCAGTCTTAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACGGAGGGTTG
66 GTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGAACCGAGGGTTG
* * * **
15732328 CAGTAGCAGGATCGACAGCACGCAGGGGGGATCAAGACGATCTCCGGCTTACGCATTCTGCCTCT
131 CAGCAGCAGGATCGACAGCACACAGGGGGGATCAAGACGATCCCCAACTTACGCATTCTGCCTCT
* * * * *
15732393 CCGATCGATTGAGCGCCCACACGCCCGTTTTATGGGTTGGCTTCGGCATAGGGAGTTCATTCCAT
196 CCGACCGACTGAGCGCCCACACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
* * * * *
15732458 GTCTAAGCCCTAGCCAGACCGAGGGTTGTGGCAACGGGACCGACAGCACGTAGAGGGGGACCGAG
261 GTCTAAGCCCCAACCAGACCGAGGGTTGTGACAACAGGACCGACAGCACGTAGAGGGGGACAGAG
* * * * * * * * *
15732523 CCGATCCTCGGCTTGCGCATTATGGCTCTTCAGCCAGCTCAGTGCCCGCGCGCTCATTTCGTTGG
326 CCGATCCCCGACTTACGCATTATGCCTCTACAGCCAGCTAAGTGCCCGCACGCTCATTTCATGGG
* *
15732588 TTGACTTAGGCATACGGAGTTCATTCCCAGTTTAAGATCGGATCGGATTGAGGGTTGCAGCAGCA
391 TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGATCGGATCGGATTGAGGGTTGCAGCAGCA
15732653 AGATCGACAGCATGCAGGGGGGGACCGAGTCGATCTTCTGCTTGTGC
456 AGATCGACAGCATGCAGGGGGGGACCGAGTCGATCTTCTGCTTGTGC
* * * *
15732700 ATTCTGCCTCTCTGATCGATTGAGTGC-CAGCACGCTCGTTTCATGGGTT-AGCTTAGGCATACG
1 ATTCTGCCTCTCCGATCGACTGAGTGCTC-GCACGCTCATTTCATGGGTTGA-CTTAGGCATACA
* * *
15732763 GAGTTCAT-TCCATGTCTAAGCATATAGAGTTCATTCCCAGTCTAAGATCGAACC-AGGCCGAGG
64 GAGTTCATCCCCA-GTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGA-ACCGAGG
* * ** *
15732826 GTTACGATAACAGGACCAGCAGCAGGATTGACAGCATACAGGGGGGGATCGGGTCGATCCCCAAC
127 G-T----T-----G--CAGCAGCAGGATCGACAGCACACA-GGGGGGATCAAGACGATCCCCAAC
* * * * * **
15732891 TTGCGCATTCTGCCTC-CCAGGCCGGCTGAGTGCCCGCACGCTTGTTTCATGGGTTGGCTTAGGC
179 TTACGCATTCTGCCTCTCC-GACCGACTGAGCGCCCACACGCCCGTTTCATGGGTTGGCTTAGGC
* *
15732955 ATACGGAGTTCATTCCATGTCTAAGCCCCAACCAGA-CGAAGGGTTGTGACAGCAGGATCGACAG
243 ATACGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCG-AGGGTTGTGACAACAGGACCGACAG
* * * * * * * *
15733019 CATGTAGAGGGGGATCAG-GCTGATCCCCGATTTATGCATTATTCCTCTAC-GATCGGTTAAGTG
307 CACGTAGAGGGGGA-CAGAGCCGATCCCCGACTTACGCATTATGCCTCTACAG-CCAGCTAAGTG
*
15733082 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
370 CCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
15733139 CATACGAAGT
Statistics
Matches: 358, Mismatches: 60, Indels: 29
0.80 0.13 0.06
Matches are distributed among these distances:
501 6 0.02
502 106 0.30
503 1 0.00
507 1 0.00
512 1 0.00
514 25 0.07
515 216 0.60
516 2 0.01
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.24
Consensus pattern (502 bp):
ATTCTGCCTCTCCGATCGACTGAGTGCTCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGA
GTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGAACCGAGGGTTG
CAGCAGCAGGATCGACAGCACACAGGGGGGATCAAGACGATCCCCAACTTACGCATTCTGCCTCT
CCGACCGACTGAGCGCCCACACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
GTCTAAGCCCCAACCAGACCGAGGGTTGTGACAACAGGACCGACAGCACGTAGAGGGGGACAGAG
CCGATCCCCGACTTACGCATTATGCCTCTACAGCCAGCTAAGTGCCCGCACGCTCATTTCATGGG
TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGATCGGATCGGATTGAGGGTTGCAGCAGCA
AGATCGACAGCATGCAGGGGGGGACCGAGTCGATCTTCTGCTTGTGC
Found at i:15733373 original size:343 final size:350
Alignment explanation
Indices: 15732713--15733390 Score: 806
Period size: 343 Copynumber: 1.9 Consensus size: 350
15732703 CTGCCTCTCT
* *
15732713 GATCGATTGAGTGCCAGCACGCTCGTTTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCATGT
1 GATCGATTAAGTGCCAGCACGCTCGTTTCATGGGTTAGCTTAGGCATACGGAGTTCATCCCATGT
* *
15732778 CTAAGCATATAGAGTTCATTCCCAGTCTAAGATCGAACCAGGCCGAGGGTTACGATAACAGGACC
66 CTAAGCATAGAGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTA-G---ACA-GACC
* * * * *
15732843 AGCAGCAGGATTGACAGCATACAGGGGGGGATCGGGTCGATCCCCAACTTGCGCATTCTGCCTCC
126 A-CAGCAAGATCGACAGCACACAGGGGGGGACCGGGTCGATCCCCAACTTGCGCATTCTACCTCC
* * **
15732908 CAGGCCGGCTGAGTGCCCGCACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
190 CAGACCCGCTGAGTGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
* * *
15732973 GTCTAAGCCCCAACCAGACGAAGGGTTGTGACAGCAGGATCGACAGCATGTAGAGGGGGATCAG-
255 GTCTAAGCCCCAACCAGACGAAGGGTTGTGACAGCAGGATAGACAGCACGCAGAGGGGGA-CAGA
15733037 GCTGATCCCCGATTTATGCATTATTCCTCTAC
319 GCTGATCCCCGATTTATGCATTATTCCTCTAC
* *
15733069 GATCGGTTAAGTGCCCGCACGCTCGTTTCATGGGTT-GACTTAGGCATACGGAGTTCATCCCCA-
1 GATCGATTAAGTGCCAGCACGCTCGTTTCATGGGTTAG-CTTAGGCATACGGAGTTCAT-CCCAT
* * * * *
15733132 GTCTAAGCATACGA-AGTTCATTCCCAGTGTTAGATTGGACCAGATCGAGGGTT-G-C-GA-CA-
64 GTCTAAGCATA-GAGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTAGACAGACCAC
* * ** * *
15733191 A-CAAGATCGATAGCACACA-TGGGGGACCGGGTCGATCCCTGACTTGTGCATTCTACCTCTTC-
128 AGCAAGATCGACAGCACACAGGGGGGGACCGGGTCGATCCCCAACTTGCGCATTCTACCTC-CCA
* *
15733253 GACCCGCTGAGTGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
192 GACCCGCTGAGTGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
**** * * * *
15733318 CTAAGCCCCAGTTGGACTG-AGGGTTGTGGCAGCGGGATAGGCAGCACGCAGAGGGGGACCGAGC
257 CTAAGCCCCAACCAGAC-GAAGGGTTGTGACAGCAGGATAGACAGCACGCAGAGGGGGACAGAGC
15733382 TGATCCCCG
321 TGATCCCCG
15733391 GCTTGCGCGT
Statistics
Matches: 277, Mismatches: 39, Indels: 25
0.81 0.11 0.07
Matches are distributed among these distances:
342 2 0.01
343 150 0.54
344 16 0.06
345 1 0.00
347 2 0.01
348 2 0.01
350 1 0.00
354 1 0.00
355 1 0.00
356 97 0.35
357 4 0.01
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.23
Consensus pattern (350 bp):
GATCGATTAAGTGCCAGCACGCTCGTTTCATGGGTTAGCTTAGGCATACGGAGTTCATCCCATGT
CTAAGCATAGAGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTAGACAGACCACAGC
AAGATCGACAGCACACAGGGGGGGACCGGGTCGATCCCCAACTTGCGCATTCTACCTCCCAGACC
CGCTGAGTGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
GCCCCAACCAGACGAAGGGTTGTGACAGCAGGATAGACAGCACGCAGAGGGGGACAGAGCTGATC
CCCGATTTATGCATTATTCCTCTAC
Found at i:15735352 original size:26 final size:26
Alignment explanation
Indices: 15735323--15735375 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15735313 GTTGGCTTAG
*
15735323 GCATACAGAGTTTATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
15735349 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15735375 G
1 G
15735376 ATTTTGAACC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15736831 original size:159 final size:157
Alignment explanation
Indices: 15736384--15736834 Score: 433
Period size: 159 Copynumber: 2.8 Consensus size: 157
15736374 GACCAACAGT
* * * * * *
15736384 AGGATCGATAGCACACAAGAAGGGATCGGGCCGATCCCCGGCTTACGCATTCTACCTCTCCGGCT
1 AGGATCGATAGCACATAAGGAGGGATC-GGCCGGTCCCCGACTTACGCATTCTACCTCTCCGTCG
* * * * * *
15736449 AGCTGAGCGGCCGTACGCCCATTTCATGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
65 A-CTGAGCGCCCGAACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * *
15736514 GCCCCAGCCGGATCGAGGATTGTGGTAGC
129 GCACCAGCCAGACCAAGGATTGTGGTAGC
* ** * *
15736543 AGGACCGATAGCACAT-AGAGAGGGATCGAG-CGGATCTTCGACTTACGCATTATGCCTCTCCGG
1 AGGATCGATAGCACATAAG-GAGGGATCG-GCCGG-TCCCCGACTTACGCATTCTACCTCTCC-G
* * * * * ** *
15736606 TCGGCTCAGCACCCGAACGCTCGTTTCATTGGTTGACTTAGGCATACAAAGTTCATTCTCA-ATC
62 TCGACTGAGCGCCCGAACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTC-CATGTC
* *
15736670 TAAG-ATCAGACCAGACCAAGGGTTGTGGTAGC
126 TAAGCACCAG-CCAGACCAAGGATTGTGGTAGC
* * * * *
15736702 AGGATCAACAGCACATAAGGAGGGACCAGGCCGGTCCCCGACTTCCACATTCTACCTCTCCGATC
1 AGGATCGATAGCACATAAGGAGGGATC-GGCCGGTCCCCGACTTACGCATTCTACCTCTCCG-TC
* * *
15736767 GACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGCCATACGGAGTTCATTCCATGTCTAA
64 GACTGAGCGCCCGAACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
15736832 GCA
129 GCA
15736835 TACGGAGTTC
Statistics
Matches: 228, Mismatches: 52, Indels: 23
0.75 0.17 0.08
Matches are distributed among these distances:
158 11 0.05
159 206 0.90
160 11 0.05
ACGTcount: A:0.23, C:0.28, G:0.26, T:0.23
Consensus pattern (157 bp):
AGGATCGATAGCACATAAGGAGGGATCGGCCGGTCCCCGACTTACGCATTCTACCTCTCCGTCGA
CTGAGCGCCCGAACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
ACCAGCCAGACCAAGGATTGTGGTAGC
Found at i:15736856 original size:26 final size:26
Alignment explanation
Indices: 15736807--15736858 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15736797 TTGGCTTAGC
*
15736807 CATACGGAGTTCATTCCATGTCTAAG
1 CATACGGAGTTCATTCCATATCTAAG
15736833 CATACGGAGTTCATTCCCA-ATCTAAG
1 CATACGGAGTTCATT-CCATATCTAAG
15736859 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCATATCTAAG
Found at i:15737396 original size:26 final size:26
Alignment explanation
Indices: 15737346--15737396 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
15737336 GTTGACTTAG
*
15737346 GCATACAGAGTTCATCCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAATCTAA
15737372 GCATAC-GAAGTTCATTCCC-AATCTA
1 GCATACAG-AGTTCA-TCCCTAATCTA
15737397 GGATTGGACC
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
25 1 0.05
26 17 0.77
27 4 0.18
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAATCTAA
Found at i:15737560 original size:26 final size:26
Alignment explanation
Indices: 15737530--15737582 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15737520 GTTGACTTAG
*
15737530 GCATACGGAGTTTA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
15737556 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15737582 G
1 G
15737583 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15738479 original size:26 final size:26
Alignment explanation
Indices: 15738440--15738492 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15738430 GTTGGCTTAG
15738440 GCATACAGACTTCATTC-CATGTCTAA
1 GCATACAGACTTCATTCACA-GTCTAA
* *
15738466 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACAGACTTCATTCACAGTCTAA
15738492 G
1 G
15738493 ATTAGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGACTTCATTCACAGTCTAA
Found at i:15738675 original size:26 final size:26
Alignment explanation
Indices: 15738637--15738689 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15738627 GTTAACTTAG
15738637 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
*
15738663 GCATACGGTGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15738689 G
1 G
15738690 ATCAGACCGT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15740040 original size:26 final size:26
Alignment explanation
Indices: 15740004--15740056 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15739994 GTTGGCTTAG
15740004 GCATACAGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
*
15740030 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
15740056 G
1 G
15740057 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:15740229 original size:26 final size:26
Alignment explanation
Indices: 15740200--15740252 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15740190 GTTGACTTAG
15740200 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15740226 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15740252 G
1 G
15740253 ATCAGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15740621 original size:159 final size:159
Alignment explanation
Indices: 15740226--15741086 Score: 615
Period size: 159 Copynumber: 5.4 Consensus size: 159
15740216 CCCAGTCTAA
* * * ** * * *
15740226 GCATACGGAGTTCATTCTCAGTCTAAGATCAGACCGAATCGAGGGTTACGACAGTAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
* ** * * * * * * * *
15740291 GCACGTA-GGGGGGCCCGGGCCGATCCCTGGCTTGCACATTCTGTCTCTCCGACCGACTGAGTGC
66 GCACGCAGGGGGGGATCGGGTCGATCCCTGACTTGCGCATTATGCCTCTCCGACCGGCTCAGCGC
* ** * * *
15740355 CCGCACATTCGTTTCATGGGTTGGCTTAG
131 CCGAACGCTCATTTCGTGGGTTGACTTAG
* * ** * * ** * * *
15740384 GCATAGGGAGTTCATT-CCATGCCTAAGCCCCAG-TCAGACCGACTGTTGTGGCAG-TGAAACCG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGTGGCAGCAG-GATCG
* * * * * * * * * *
15740446 GCTA-CACGTAGAGGGGGACCGGGTTGATCCCTGTCTTGTGCATTATGGCTCTTCGACTGGCTCA
63 AC-AGCACGCAGGGGGGGATCGGGTCGATCCCTGACTTGCGCATTATGCCTCTCCGACCGGCTCA
* *
15740510 GTGCCCGAACGCTCATTTCGTGGGTTGAATTAG
127 GCGCCCGAACGCTCATTTCGTGGGTTGACTTAG
* * * *
15740543 GCATACGGAGTTCATTCCCAGTCTAAAATCAGAGCGGACCGAGGGTTGAGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * * * ** *
15740608 GCACGCAGGGGGGGATCGGGCCGATCCCTGGCTTACACATTCTGCCTCTCCGACCAACTGAGCGC
66 GCACGCAGGGGGGGATCGGGTCGATCCCTGACTTGCGCATTATGCCTCTCCGACCGGCTCAGCGC
* * *
15740673 CCGTACGCTCGTTTCGTGGGTTGACTGAG
131 CCGAACGCTCATTTCGTGGGTTGACTTAG
* ** ** * * * *
15740702 GCATAGGGAGTTCATTCCTTGTCTAAGCCCCAG-TCAGACCGAGGGTTGTGGCAGCGGGATCGAT
1 GCATACGGAGTTCATTCCCAGTCTAAG-ATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGAC
* ** * * * * *** *
15740766 AGCACGTAGAAGAGGATGGGGTCGATCCCTGACATGCGCATCATGCCTCTCCGGTAGGCTCAGTG
65 AGCACGCAGGGGGGGATCGGGTCGATCCCTGACTTGCGCATTATGCCTCTCCGACCGGCTCAGCG
* * *
15740831 CCCGAATGCTCGTTTTGTGGGTTGACTTAG
130 CCCGAACGCTCATTTCGTGGGTTGACTTAG
* * * ** * *
15740861 CCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACTAAGGGTTGTGGCAACAGGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * * * * * * *
15740926 GCACGGA-GGGGGGATCGGGTTGATCCCCGACTTGTGCATTCA-GCCTCTTCGGCCGGTTGAGCA
66 GCACGCAGGGGGGGATCGGGTCGATCCCTGACTTGCGCATT-ATGCCTCTCCGACCGGCTCAGCG
* *
15740989 CCCGCACGCTCATTTCGTGGG-TCAGCTTAG
130 CCCGAACGCTCATTTCGTGGGTTGA-CTTAG
* * * * *
15741019 GCATACGGAGTTCATTTCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCAGGACCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
15741084 GCA
66 GCA
15741087 GGATTGGTAG
Statistics
Matches: 534, Mismatches: 156, Indels: 26
0.75 0.22 0.04
Matches are distributed among these distances:
157 5 0.01
158 168 0.31
159 354 0.66
160 7 0.01
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
GCACGCAGGGGGGGATCGGGTCGATCCCTGACTTGCGCATTATGCCTCTCCGACCGGCTCAGCGC
CCGAACGCTCATTTCGTGGGTTGACTTAG
Done.