Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19866354
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 74000 characters in sequence are not A, C, G, or T
File 68 of 100
Found at i:15740828 original size:318 final size:317
Alignment explanation
Indices: 15740226--15740944 Score: 886
Period size: 318 Copynumber: 2.3 Consensus size: 317
15740216 CCCAGTCTAA
* * * * *
15740226 GCATACGGAGTTCATTCTCAGTCTAAGATCAGACCGAATCGAGGGTT-ACGACAGTAGGATCGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGA-GGCAGCAGGATCGAC
* ** * * * *
15740290 AGCACGTAGGGGGGCCCGGGCCGATCCCTGGCTTGCACATTCTGTCTCTCCGACCGACTGAGTGC
65 AGCACGCAGGGGGGATCGGGCCGATCCCTGGCTTACACATTCTGCCTCTCCGACCAACTGAGCGC
* * *
15740355 CCGCACATTCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGCCTAAGCCCCAGTCA
130 CCGCACACTCGTTTCATGGGTTGACTGAGGCATAGGGAGTTCATTCCATGCCTAAGCCCCAGTCA
* * * * * * * * *
15740420 GACCGACTGTTGTGGCAGTGAAACCGGCTACACGTAGAGGGGGACCGGGTTGATCCCTGTCTTGT
195 GACCGACGGTTGTGGCAGCGAAACCGGATACACGTAGAAGAGGACCGGGTCGATCCCTGACATGC
* * *
15740485 GCATTATGGCTCTTCGACTGGCTCAGTGCCCGAACGCTCATTTCGTGGGTTGAATTAG
260 GCATCATGCCTCTCCGACTGGCTCAGTGCCCGAACGCTCATTTCGTGGGTTGAATTAG
* * * *
15740543 GCATACGGAGTTCATTCCCAGTCTAAAATCAGAGCGGACCGAGGGTTGAGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGAGGCAGCAGGATCGACA
15740608 GCACGCAGGGGGGGATCGGGCCGATCCCTGGCTTACACATTCTGCCTCTCCGACCAACTGAGCGC
66 GCACGCA-GGGGGGATCGGGCCGATCCCTGGCTTACACATTCTGCCTCTCCGACCAACTGAGCGC
* * * * *
15740673 CCGTACGCTCGTTTCGTGGGTTGACTGAGGCATAGGGAGTTCATTCCTTGTCTAAGCCCCAGTCA
130 CCGCACACTCGTTTCATGGGTTGACTGAGGCATAGGGAGTTCATTCCATGCCTAAGCCCCAGTCA
* ** * **
15740738 GACCGAGGGTTGTGGCAGCGGGATC-GATAGCACGTAGAAGAGGATGGGGTCGATCCCTGACATG
195 GACCGACGGTTGTGGCAGCGAAACCGGATA-CACGTAGAAGAGGACCGGGTCGATCCCTGACATG
* * * * *
15740802 CGCATCATGCCTCTCCG-GTAGGCTCAGTGCCCGAATGCTCGTTTTGTGGGTTGACTTAG
259 CGCATCATGCCTCTCCGACT-GGCTCAGTGCCCGAACGCTCATTTCGTGGGTTGAATTAG
* * ** * * *
15740861 CCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACTAAGGGTTGTGGCAACAGGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGAGGCAGCAGGATCGACA
*
15740926 GCACGGAGGGGGGATCGGG
66 GCACGCAGGGGGGATCGGG
15740945 TTGATCCCCG
Statistics
Matches: 339, Mismatches: 59, Indels: 8
0.83 0.15 0.02
Matches are distributed among these distances:
317 76 0.22
318 263 0.78
ACGTcount: A:0.21, C:0.26, G:0.31, T:0.23
Consensus pattern (317 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGAGGCAGCAGGATCGACA
GCACGCAGGGGGGATCGGGCCGATCCCTGGCTTACACATTCTGCCTCTCCGACCAACTGAGCGCC
CGCACACTCGTTTCATGGGTTGACTGAGGCATAGGGAGTTCATTCCATGCCTAAGCCCCAGTCAG
ACCGACGGTTGTGGCAGCGAAACCGGATACACGTAGAAGAGGACCGGGTCGATCCCTGACATGCG
CATCATGCCTCTCCGACTGGCTCAGTGCCCGAACGCTCATTTCGTGGGTTGAATTAG
Found at i:15741579 original size:26 final size:26
Alignment explanation
Indices: 15741543--15741621 Score: 106
Period size: 26 Copynumber: 3.0 Consensus size: 26
15741533 GTTGACTTAG
15741543 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
* *
15741569 GCATATGGAGTTCATTCCC-AGTGTAA
1 GCATACGGAGTTCA-TCCCTAGTCTAA
**
15741595 GCATACGGAGTTCATTACTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
15741621 G
1 G
15741622 ATTGGACCGG
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
25 2 0.04
26 39 0.87
27 4 0.09
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:15742270 original size:26 final size:26
Alignment explanation
Indices: 15742234--15742286 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15742224 GTTGGCTTAG
15742234 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
15742260 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
15742286 G
1 G
15742287 ATCAGGCCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:15744255 original size:26 final size:26
Alignment explanation
Indices: 15744219--15744271 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15744209 GTTGACCTAG
* *
15744219 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTGCATCCCCAGTCTAA
* *
15744245 GCATACAGAGTGCATTCTCAGTCTAA
1 GCATACAGAGTGCATCCCCAGTCTAA
15744271 G
1 G
15744272 ATTGGATCAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTGCATCCCCAGTCTAA
Found at i:15744611 original size:26 final size:26
Alignment explanation
Indices: 15744575--15744627 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15744565 GTTGACTTAG
*
15744575 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
15744601 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15744627 G
1 G
15744628 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15744956 original size:184 final size:184
Alignment explanation
Indices: 15744524--15744970 Score: 542
Period size: 184 Copynumber: 2.4 Consensus size: 184
15744514 TCTCCAGTCA
* * *
15744524 ACCTCTCCGATCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCA
1 ACCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
*
15744589 TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACA
66 TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACA
* ** *
15744654 GCAGGATCGGCAGCATGCAGAGGGGACCAGGCTGATCCCTGACTTGCGCATTCG
131 CCAGGATCGGCAGCACACAGAGGGGACCAGGCCGATCCCTGACTTGCGCATTCG
** *
15744708 ACCTCTCCGACCGATTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCA
1 ACCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * * * *
15744773 TCCCCAGTCTAAGCATATGGAGTTCATTCTCAGTCTAAGATCAGATCAGACCGAGGGTTGTGGCA
66 TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACA
* * * * ** *
15744838 CCAGGATCGGTAGCACATAGGGGGGACC-GAGCCGATCCCTGGCTTGCTTATTTTG
131 CCAGGATCGGCAGCACACAGAGGGGACCAG-GCCGATCCCTGACTTGCGCA-TTCG
* * * * * * * *
15744893 -CCTCTCCGACCGGCTGAGAGCCCACACACCCGTATTC-TGGGTTGGCTTCGACATAGGGAGTTC
1 ACCTCTCCGACCGGCTGAGCGCCCGCACGCTCGT-TTCGTGGGTTGACTTAGGCATACGGAGTTC
*
15744956 AT-TCCATGTCTAAGC
65 ATCCCCA-GTCTAAGC
15744971 CCCAGCCGGA
Statistics
Matches: 224, Mismatches: 35, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
183 4 0.02
184 214 0.96
185 6 0.03
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (184 bp):
ACCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
TCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACA
CCAGGATCGGCAGCACACAGAGGGGACCAGGCCGATCCCTGACTTGCGCATTCG
Found at i:15745180 original size:158 final size:159
Alignment explanation
Indices: 15745030--15745378 Score: 382
Period size: 159 Copynumber: 2.2 Consensus size: 159
15745020 GGACCGGACC
* * * **
15745030 GATCCCCGGCTTGTGCATTATGCCTCT-CTGTC-GACTCAGTGCCCGAACGCTCGTTTCATGGGT
1 GATCCCCGACTTGCGCATTATGCCTCTCCGGTCAG-CTCAGCACCCGAACGCTCGTTTCATGGGT
* * * ** * *
15745093 TGACTTAGGTATAC-GAAGTTCATTCCCAGTCTACGATCAGATCAGACTGAGGGTTTTGGTAGTA
65 TGACTTAGGCATACAG-AGTTCATTCCCAGTATAAGATCAGATCAGACCAAGGGTTATGGTAGCA
*
15745157 GGATCAACAGCACGTAAGAGGGGACCAGGTA
129 GGACCAACAGCACGTAAGAGGGGACCAGGTA
* * * * *
15745188 GGTCCCCGACTTGCGCATTCTGCCTCTCCGGTCAGCTGAGCACCCGCACGCTCGTTTCGTGGGTT
1 GATCCCCGACTTGCGCATTATGCCTCTCCGGTCAGCTCAGCACCCGAACGCTCGTTTCATGGGTT
* *
15745253 GGCTTAGGCATACAGAGTTCATTCCTAGTATAAGATCAGATCAGACCAAGGGTTATGGTAGCAGG
66 GACTTAGGCATACAGAGTTCATTCCCAGTATAAGATCAGATCAGACCAAGGGTTATGGTAGCAGG
* * * * *
15745318 ACCGACAGCACGTAGGA-GGGATCGGGTC
131 ACCAACAGCACGTAAGAGGGGACCAGGTA
* * * * *
15745346 GATCCCTGGCTTACGCATTCTACCTCTCCGGTC
1 GATCCCCGACTTGCGCATTATGCCTCTCCGGTC
15745379 GGCTGAATGC
Statistics
Matches: 158, Mismatches: 30, Indels: 6
0.81 0.15 0.03
Matches are distributed among these distances:
158 59 0.37
159 97 0.61
160 2 0.01
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (159 bp):
GATCCCCGACTTGCGCATTATGCCTCTCCGGTCAGCTCAGCACCCGAACGCTCGTTTCATGGGTT
GACTTAGGCATACAGAGTTCATTCCCAGTATAAGATCAGATCAGACCAAGGGTTATGGTAGCAGG
ACCAACAGCACGTAAGAGGGGACCAGGTA
Found at i:15745421 original size:158 final size:159
Alignment explanation
Indices: 15745096--15745435 Score: 387
Period size: 158 Copynumber: 2.1 Consensus size: 159
15745086 CATGGGTTGA
* * * ** * *
15745096 CTTAGGTATAC-GAAGTTCATTCCCAGTCTACGATCAGATCAGACTGAGGGTTTTGGTAGTAGGA
1 CTTAGGCATACAG-AGTTCATTCCCAGTATAAGATCAGATCAGACCAAGGGTTATGGTAGCAGGA
* * * *
15745160 TCAACAGCACGTAAGAGGGGACCAGGTAGGTCCCCGACTTGCGCATTCTGCCTCTCCGGTCAGCT
65 CCAACAGCACGTAAGAGGGGACCAGGTAGATCCCCGACTTACGCATTCTACCTCTCCGGTCAGCT
* * * *
15745225 GAGCACCCGCACGCTCGTTTCGTGGGTTGG
130 GAACACCCGCACGCCCATTTCGTGGGATGG
*
15745255 CTTAGGCATACAGAGTTCATTCCTAGTATAAGATCAGATCAGACCAAGGGTTATGGTAGCAGGAC
1 CTTAGGCATACAGAGTTCATTCCCAGTATAAGATCAGATCAGACCAAGGGTTATGGTAGCAGGAC
* * * * * * * *
15745320 CGACAGCACGTAGGA-GGGATCGGGTCGATCCCTGGCTTACGCATTCTACCTCTCCGGTCGGCTG
66 CAACAGCACGTAAGAGGGGACCAGGTAGATCCCCGACTTACGCATTCTACCTCTCCGGTCAGCTG
** *
15745384 AATGCCTGCACGCCCATTTCGTGGGATGG
131 AACACCCGCACGCCCATTTCGTGGGATGG
* **
15745413 CTTGGGCATAGGGAGTTCATTCC
1 CTTAGGCATACAGAGTTCATTCC
15745436 ATGTCTAAGC
Statistics
Matches: 150, Mismatches: 30, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
158 82 0.55
159 67 0.45
160 1 0.01
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.24
Consensus pattern (159 bp):
CTTAGGCATACAGAGTTCATTCCCAGTATAAGATCAGATCAGACCAAGGGTTATGGTAGCAGGAC
CAACAGCACGTAAGAGGGGACCAGGTAGATCCCCGACTTACGCATTCTACCTCTCCGGTCAGCTG
AACACCCGCACGCCCATTTCGTGGGATGG
Found at i:15745984 original size:184 final size:184
Alignment explanation
Indices: 15745553--15745985 Score: 512
Period size: 184 Copynumber: 2.4 Consensus size: 184
15745543 CTCCGGTCGA
* *
15745553 CTGAGCGCCCGTACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
1 CTGAGCGCCCGTACACTCGTTTCATGGGTTGACTTAGGCATAAGGAGTTCATCCCCAGTTTAAGC
* *
15745618 ATACGAAGTTCATTCTCAATCTCAGATCAGACCAGACCGAAGGTTGCAGTAGCAGGATCGACAGC
66 ATACGAAGTTCATTCCCAATCTAAGATCAGACCAGACCGAAGGTTGCAGTAGCAGGATCGACAGC
* * * ***
15745683 ACACAGGGGGGACCGGGCTGATCCTCGGCTTGCGCATTCAGCCTCTCTGGTTGG
131 ACACAGGGGGGACCGGGCTGATCCCCGACTTGCGCATTCAGCCTCTCCGACCGG
* * * * * *
15745737 TTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTCGACATAAGGAGTTCATCCCCAGTTTAAGC
1 CTGAGCGCCCGTACACTCGTTTCATGGGTTGACTTAGGCATAAGGAGTTCATCCCCAGTTTAAGC
* * * * * * **
15745802 ATACGAAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGC-GATAGTAGGTTCGGTAG
66 ATACGAAGTTCATTCCCAATCTAAGATCAGACCAGACCGAAGGTTGCAG-TAGCAGGATCGACAG
** * **
15745866 CACGTAGGGGGGACCGGG-TCGATCCCCGACTTGTGCATTTTGCCTCTCCGACCGG
130 CACACAGGGGGGACCGGGCT-GATCCCCGACTTGCGCATTCAGCCTCTCCGACCGG
* * * * *
15745921 CTGAGAGCCCGTACACCCGTATCATGGGTTGGCTTAGGCATAAGGAGTTCAT-TCCATGTTTAAG
1 CTGAGCGCCCGTACACTCGTTTCATGGGTTGACTTAGGCATAAGGAGTTCATCCCCA-GTTTAAG
15745985 C
65 C
15745986 CCCAGTCGAA
Statistics
Matches: 206, Mismatches: 40, Indels: 6
0.82 0.16 0.02
Matches are distributed among these distances:
183 5 0.02
184 201 0.98
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.24
Consensus pattern (184 bp):
CTGAGCGCCCGTACACTCGTTTCATGGGTTGACTTAGGCATAAGGAGTTCATCCCCAGTTTAAGC
ATACGAAGTTCATTCCCAATCTAAGATCAGACCAGACCGAAGGTTGCAGTAGCAGGATCGACAGC
ACACAGGGGGGACCGGGCTGATCCCCGACTTGCGCATTCAGCCTCTCCGACCGG
Found at i:15746162 original size:159 final size:157
Alignment explanation
Indices: 15745800--15746163 Score: 355
Period size: 159 Copynumber: 2.3 Consensus size: 157
15745790 CCCAGTTTAA
* * *
15745800 GCATAC-GAAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGATAGTAGGTTCGGT
1 GCATACAG-AGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGATAG-AGGATCGAT
* ** * * * *
15745864 AGCACGTAGGGGGGACCGGGTCGATCCCCGACTTGTGCATTTTGCCTCTCCGACCGGCTGAGAGC
64 AGCACGCAGGGGGGACCGGACCGATCCCCGACTTGAGCATTATGCCTCTCCGACCAGCTCAGAGC
* *
15745929 CCGTACACCCGTATCATGGGTTGGCTTAG
129 CCGAACACCCGTATCATGGGTTGACTTAG
* * ** * * *
15745958 GCATA-AGGAGTTCATT-CCATGTTTAAG-CCCCAGTCGAACCGAGGGTTGTGGCTACG-GGATC
1 GCATACA-GAGTTCATTCCCA-GTCTAAGATCGGA-TCGGACCGAGGGTTG-CGATA-GAGGATC
*
15746019 GATAGCACGCAGAGGGGGACCGGACCGATCCCCGGCTTGAGCATTATGCCTCTCC-ATCCAGCTC
61 GATAGCACGCAG-GGGGGACCGGACCGATCCCCGACTTGAGCATTATGCCTCTCCGA-CCAGCTC
* * *
15746083 A-ATGCCCGAACGCTCGTTTCATGGGTTGACTTAG
124 AGA-GCCCGAACACCCGTATCATGGGTTGACTTAG
* * *
15746117 GCATACAGAGTTCATTCCCAGTCGACGATCGGATCGGACTGAGGGTT
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTT
15746164 ACAGCAGCAG
Statistics
Matches: 163, Mismatches: 31, Indels: 23
0.75 0.14 0.11
Matches are distributed among these distances:
157 5 0.03
158 48 0.29
159 103 0.63
160 7 0.04
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGATAGAGGATCGATAG
CACGCAGGGGGGACCGGACCGATCCCCGACTTGAGCATTATGCCTCTCCGACCAGCTCAGAGCCC
GAACACCCGTATCATGGGTTGACTTAG
Found at i:15746483 original size:26 final size:26
Alignment explanation
Indices: 15746447--15746496 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
15746437 GTTGACTTAG
15746447 GCATACGGAGTTCATCCCCAGTCTGA
1 GCATACGGAGTTCATCCCCAGTCTGA
* *
15746473 GCATATGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATCCCCAGTCT
15746497 AAGATTGAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTGA
Found at i:15747965 original size:158 final size:157
Alignment explanation
Indices: 15747630--15747975 Score: 364
Period size: 158 Copynumber: 2.2 Consensus size: 157
15747620 GTTGATCCTT
* * * * *
15747630 GGCTTGCGCATTCTGCCTCTCTGGCCTGCTGAGCGCTCGTACGCCCATTTCATGGGTTGGATTAG
1 GGCTTGCGCATTCTGCCTCTCCGGCCGGCTCAGCGCTCGAACACCCATTTCATGGGTTGGATTAG
* * *
15747695 GCATAGGGAGTTTATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTGTGAGAGCGAGATCGGTA
66 GCATACGGAGTTTATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGCGAGAGCGAGATC-G-A
* * *
15747760 GCACGTAGAGGGAGATCGGGTCGATCCTC
129 ACACGTAGAGGGAGATCGGGCCGATCCCC
* * * * *
15747789 GGCTTACGCA-TATGCCTCTCCGGTCGGCTCAGCTCTCGAACACTCATTTCATGGGTT-GACTTA
1 GGCTTGCGCATTCTGCCTCTCCGGCCGGCTCAGCGCTCGAACACCCATTTCATGGGTTGGA-TTA
** * *
15747852 GGCATACGGAGTTTATTCCCA-GTCTAAGATCC-GACCGGACCTAGGGTTGCGATAGC-AGGATC
65 GGCATACGGAGTTTATT-CCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGCGAGAGCGA-GATC
15747914 -AACA-GTATGTAGGGAGGATCGGGCCGATCCCC
127 GAACACGTA-G-AGGGA-GATCGGGCCGATCCCC
* *
15747946 GGCTTGTGCATTCTACCTCTCCGGCCGGCT
1 GGCTTGCGCATTCTGCCTCTCCGGCCGGCT
15747976 GAGCACCCAC
Statistics
Matches: 154, Mismatches: 25, Indels: 17
0.79 0.13 0.09
Matches are distributed among these distances:
154 3 0.02
155 4 0.03
156 5 0.03
157 26 0.17
158 104 0.68
159 12 0.08
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.25
Consensus pattern (157 bp):
GGCTTGCGCATTCTGCCTCTCCGGCCGGCTCAGCGCTCGAACACCCATTTCATGGGTTGGATTAG
GCATACGGAGTTTATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGCGAGAGCGAGATCGAAC
ACGTAGAGGGAGATCGGGCCGATCCCC
Found at i:15748262 original size:26 final size:26
Alignment explanation
Indices: 15748232--15748284 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15748222 GTCGACTTAG
15748232 GCATACGGAGTTCA-TCCTCAGTCTAA
1 GCATACGGAGTTCATTCC-CAGTCTAA
15748258 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15748284 G
1 G
15748285 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15749727 original size:26 final size:26
Alignment explanation
Indices: 15749697--15749752 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
15749687 TGGGTTGACT
15749697 TAAGCATACAGAGTTCATCCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
* * *
15749723 TAAGCATACGGAGTTCATTCCTAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
15749749 TAAG
1 TAAG
15749753 ATCAGACCGA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATCCCCAGTC
Found at i:15750621 original size:158 final size:158
Alignment explanation
Indices: 15750381--15750737 Score: 371
Period size: 158 Copynumber: 2.3 Consensus size: 158
15750371 GTGCCCGAAT
** * ** *
15750381 GCTCATTTTATGGGTTGACTTAAGTGTACTGAGTTCATTCCCAGTCTAAGATCGGATCAGATCGA
1 GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGATCGA
* * *
15750446 GCATTGTGACAACAGGATCGACAGCACGTAAGGGGGACCGAACCGGTCCCTGGCTTGTGCATTCT
66 GCATTGAGACAACAGGATCGACAGCACGTAAGGGGGACCGAACCGGTCCCCGGCTTGCGCATTCT
15750511 ACCTCTTC-GGCCAGCTGAGCGCC-CCTAC
131 A-CTCTTCTGGCCAGCTGAGCGCCTCC-AC
*
15750539 GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGA-CTG
1 GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGATC-G
* ** ** * * * * ***
15750603 AAG-GTTGAGGTAGTAGGATTGATAGCACGTAGGGGGGATCGGGTCGGTCCCCGGCTTGCGCATT
65 -AGCATTGAGACAACAGGATCGACAGCACGTAAGGGGGACCGAACCGGTCCCCGGCTTGCGCATT
* * * * * *
15750667 CTACTTTTCTGGTCGGTTGAGTGCCTGCAC
129 CTACTCTTCTGGCCAGCTGAGCGCCTCCAC
* * *
15750697 CCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCC
1 GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
15750738 ATCTCTAAGC
Statistics
Matches: 164, Mismatches: 31, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
157 6 0.04
158 155 0.95
159 3 0.02
ACGTcount: A:0.19, C:0.24, G:0.29, T:0.28
Consensus pattern (158 bp):
GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGATCGA
GCATTGAGACAACAGGATCGACAGCACGTAAGGGGGACCGAACCGGTCCCCGGCTTGCGCATTCT
ACTCTTCTGGCCAGCTGAGCGCCTCCAC
Found at i:15751360 original size:26 final size:26
Alignment explanation
Indices: 15751331--15751383 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15751321 GGTAACTTAG
15751331 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
15751357 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15751383 G
1 G
15751384 ATCAGATCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15751711 original size:159 final size:157
Alignment explanation
Indices: 15751357--15751737 Score: 359
Period size: 159 Copynumber: 2.4 Consensus size: 157
15751347 CCCAGTCTAA
** * * * *
15751357 GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCAAACTGAGGGTTGCGACAGCAGGATCGGCA
1 GCATACGGAGTTCATT-CTAGTCTAAGATCAGATCGGACTGAGGGTTGCGGCAGCGGGACCAGCA
* * * * * * * ** * * * *
15751422 GCACGCAGGAGGGATCGGGTTGATCCCCGACTTATGTATTCTGCCTCTCTGACCGGCTGAGCGCT
65 GCACACAGAAGGGACCGGGTCGATCCCCGACTTACGCATTATGCCTCTCCCACCGGCTCAACACC
* * * *
15751487 CGTACGCCCATTTCGTGGGTTGGCTTTG
130 CGAACGCCCATTTCGTGGATTGACTTAG
* * * ** *
15751515 GCATAGGGAGTTCATTCCATGTCTAGGCCCCAG-TCGGACTGAGGGTTGTGGCAGCGGGACCAGC
1 GCATACGGAGTTCATTCTA-GTCTAAG-ATCAGATCGGACTGAGGGTTGCGGCAGCGGGACCAGC
* * *
15751579 AGCACACAGAAGGGGACCGGGTCGATCTCCGGCTTGCGCATTATGCCTCTCCCACCGGCTCAACA
64 AGCACACAGAA-GGGACCGGGTCGATCCCCGACTTACGCATTATGCCTCTCCCACCGGCTCAACA
* *
15751644 CCCGAACGCTCGTTTCGTGGATTGACTTAG
128 CCCGAACGCCCATTTCGTGGATTGACTTAG
* * * *
15751674 GCATACGGAATTCATTCGTAGTCTAAGATCAGATCGGACCCGAGGGTTGCAGTAGCGGGACCAG
1 GCATACGGAGTTCATTC-TAGTCTAAGATCAGATCGGA-CTGAGGGTTGCGGCAGCGGGACCAG
15751738 TAGTAGGATT
Statistics
Matches: 173, Mismatches: 44, Indels: 10
0.76 0.19 0.04
Matches are distributed among these distances:
157 2 0.01
158 57 0.33
159 92 0.53
160 22 0.13
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCTAGTCTAAGATCAGATCGGACTGAGGGTTGCGGCAGCGGGACCAGCAG
CACACAGAAGGGACCGGGTCGATCCCCGACTTACGCATTATGCCTCTCCCACCGGCTCAACACCC
GAACGCCCATTTCGTGGATTGACTTAG
Found at i:15751875 original size:26 final size:26
Alignment explanation
Indices: 15751845--15751897 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15751835 GTTGACTTAG
*
15751845 GCATATAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
15751871 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
15751897 G
1 G
15751898 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:15752055 original size:184 final size:184
Alignment explanation
Indices: 15751787--15752437 Score: 589
Period size: 184 Copynumber: 3.5 Consensus size: 184
15751777 CTCAGCTTAC
* * * *
15751787 GCATTTTACCTCTCCGATCGACTGAGCGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATATA
1 GCATTCTACCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACA
* *
15751852 GAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGT
66 GAGTTCATCTCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGT
* * *
15751917 TACGGCAATAGGATTGACAGCACGCAGGGGGGACTGGG-CTGGTCCCCGGCTTGCT
131 TACGGCAATAGGATAGGCAGCACGCAGGGGGGACTGGGTC-GATCCCCGGCTTG-T
* * ** *
15751972 -CATTCTGCCTCAT-CGACCGGCTGAGCGCCCGCA-GCCTCGTTTTGTGGGTTGGCTTAGGCATA
1 GCATTCTACCTC-TCCGATCGGCTGAGCGCCCGCACG-CTCGTTTCATGGGTTGACTTAGGCATA
* * * * * *
15752034 CGGAGTTCAT-TCCATGTCTAAGCATACGAAGTTCATTCCTAGTCCAAGATTGGATTGGA-TCGA
64 CAGAGTTCATCTCCA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACT-GA
* * * * * * * *
15752097 GGGTTACGACCCCAGGACCACCAGCAGGATCGGCAGGACACACGGGGTGTCCGGGTCGATCTCCG
127 GGGTT---A---C-GG--CA--A-TAGGATAGGCAGCACGCA-GGGGGGACTGGGTCGATCCCCG
* *
15752162 ACTTTT
179 GCTTGT
* *
15752168 GCATTCTACCTCTCCGATCGGCTGAGCGCTCGCACGCTCGTTTCATGGGTTGACTTAAGCATACA
1 GCATTCTACCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACA
* * * * * *
15752233 GAGTTAATCTCTACTATAAGCATACGGAGTTCATTCCCAGTCTATGATCGGACAGGACTGAGGGT
66 GAGTTCATCTCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGT
* * * * * *
15752298 TGCGGCAGTAAGATAGGCAGCACGTAGGAGGGA-TCGAGTCGATCCCCGGCTTGT
131 TACGGCAATAGGATAGGCAGCACGCAGGGGGGACT-GGGTCGATCCCCGGCTTGT
* * * * * **
15752352 GCATTCTACCTCTCCGATCGACTGAGCGTCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGG
1 GCATTCTACCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACA
*
15752417 GAGTTTAT-TCCATGTCTAAGC
66 GAGTTCATCTCCA-GTCTAAGC
15752438 CCCAACCGAA
Statistics
Matches: 364, Mismatches: 77, Indels: 51
0.74 0.16 0.10
Matches are distributed among these distances:
183 8 0.02
184 191 0.52
185 13 0.04
187 1 0.00
188 2 0.01
190 3 0.01
191 3 0.01
193 2 0.01
195 1 0.00
196 15 0.04
197 119 0.33
198 6 0.02
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (184 bp):
GCATTCTACCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACA
GAGTTCATCTCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGT
TACGGCAATAGGATAGGCAGCACGCAGGGGGGACTGGGTCGATCCCCGGCTTGT
Found at i:15752785 original size:157 final size:158
Alignment explanation
Indices: 15752539--15752910 Score: 430
Period size: 157 Copynumber: 2.4 Consensus size: 158
15752529 CGGTTCAGTG
* * * * *
15752539 CCCGAACGCTCATTTTATGGGTTGACTTAAGCAAACGGAGTTCATTCCCAGTCTAAGATCGGATC
1 CCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC
* * *
15752604 AGACCGAGCGTTGTGACAGCAGGATCGATAGCACGTAAGGGGGACC-GAGCCGGTCCCTAGCTTG
66 AGACCGAGCGTTGAGACAGCAGGATCGACAGCACGTAAGGGGGACCAG-GCCGGTCCCCAGCTTG
15752668 CGCATTCTACCTCT-TCGGCCAGCTGAGCA
130 CGCATTCTACCTCTCT-GGCCAGCTGAGCA
*
15752697 CCC-TACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC
1 CCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC
* * ** * * * * * *
15752761 GGACTGAAG-GTTGAGGTAGTAGGATTGACAGCACGTAGGGGGGATCAGGTCGGTCCCCGGCTTG
66 AGACCG-AGCGTTGAGACAGCAGGATCGACAGCACGTAAGGGGGACCAGGCCGGTCCCCAGCTTG
* * * * **
15752825 TGCATTCTACTTCTCTGGCCTGTTGAGTG
130 CGCATTCTACCTCTCTGGCCAGCTGAGCA
* *
15752854 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCGTACGGAGTTCATT-CCATGTCTAAG
1 CCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG
15752911 CATATGGAGT
Statistics
Matches: 182, Mismatches: 27, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
157 129 0.71
158 53 0.29
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.26
Consensus pattern (158 bp):
CCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC
AGACCGAGCGTTGAGACAGCAGGATCGACAGCACGTAAGGGGGACCAGGCCGGTCCCCAGCTTGC
GCATTCTACCTCTCTGGCCAGCTGAGCA
Found at i:15753346 original size:26 final size:26
Alignment explanation
Indices: 15753309--15753359 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15753299 GCTCAAACTC
15753309 TTAGACTGGGAATGAACTCCGTATGT
1 TTAGACTGGGAATGAACTCCGTATGT
15753335 TTAGACAT-GGAATGAACTCCGTATG
1 TTAGAC-TGGGAATGAACTCCGTATG
15753360 CCTAAGCCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGT
Found at i:15753677 original size:158 final size:159
Alignment explanation
Indices: 15753335--15753677 Score: 377
Period size: 159 Copynumber: 2.2 Consensus size: 159
15753325 CTCCGTATGT
* *
15753335 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCGCTTAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCACTCAGCC
* * * * *
15753400 GGTCGGAGAGGTAGAATGCACAAGCCAGGGATCGGCTCGATCCCCCTCTGCATGCTACCGATCCC
66 GATCAGAGAGGCAGAATGCACAAGCCAGGGATCAGCCCGATCCCCCTCTGCATGCTACCGATCCC
* * *
15753465 GCTGCCACAACCCTTAGTCTAGCTGGGGC
131 GCTGCCACAACCCTCAGTCCAGCTGGAGC
* * * * *
15753494 TTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAGTC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCACTCAGCC
** *** * ** *
15753559 GATCAGAGAGGCAGAATGCGTAAGTTGGGGATCAGCCCGGTCTTCC-CTGCATGCTACCGATCCT
66 GATCAGAGAGGCAGAATGCACAAGCCAGGGATCAGCCCGATCCCCCTCTGCATGCTACCGATCCC
** * * *
15753623 GCTGCCGTAACCCTCGGTCCGGTCT-GATC
131 GCTGCCACAACCCTCAGTCCAG-CTGGAGC
*
15753652 TTAGA-TTGGGAATGAACTCCGTATGC
1 TTAGACAT-GGAATGAACTCCGTATGC
15753678 TTAGACTGGG
Statistics
Matches: 151, Mismatches: 31, Indels: 5
0.81 0.17 0.03
Matches are distributed among these distances:
157 1 0.01
158 57 0.38
159 93 0.62
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (159 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCACTCAGCC
GATCAGAGAGGCAGAATGCACAAGCCAGGGATCAGCCCGATCCCCCTCTGCATGCTACCGATCCC
GCTGCCACAACCCTCAGTCCAGCTGGAGC
Found at i:15753680 original size:26 final size:26
Alignment explanation
Indices: 15753651--15753703 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15753641 CCGGTCTGAT
*
15753651 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
15753677 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15753703 C
1 C
15753704 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15753889 original size:26 final size:26
Alignment explanation
Indices: 15753860--15753912 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15753850 CCAGTCTGAT
*
15753860 CTTAGAC-TAGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
15753886 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
15753912 C
1 C
15753913 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:15754404 original size:26 final size:26
Alignment explanation
Indices: 15754360--15754412 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15754350 CCGGTCGGAT
*
15754360 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATAAACTCCATATG
* * *
15754386 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCATATG
15754412 C
1 C
15754413 CTATGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCATATG
Found at i:15755109 original size:26 final size:26
Alignment explanation
Indices: 15755071--15755123 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15755061 GGCTCAAAAT
*
15755071 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15755097 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
15755123 C
1 C
15755124 CTAAGGCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15755458 original size:157 final size:158
Alignment explanation
Indices: 15755094--15755469 Score: 379
Period size: 158 Copynumber: 2.4 Consensus size: 158
15755084 TGAACTTCGT
* * *
15755094 ATGCTTAGACATGGAATGAACTCCGTATGCCTAAGGC-AACCCACGAAACGAGCGCGTGGGCGCT
1 ATGCTTAGACATGGAATGAACTCCATATGCCTAA-GCTAACCCACGAAACGAGCGTGCGGGCGCT
* * ** * * *
15755158 TAGCCGGTCGGAGAGGTAGAATGAACAAGCCGAGGATTGGCCCGATCCCCCCTACGTGCTGTTGA
65 GAGCCGATCAAAGAGGTAGAAAGAACAAGCCGAGGATCGGCCCGATCCCCCCTACGTGCTGTCGA
* * * *
15755223 TCCTGCTGCCATAACCCTCAGTCTAGTCCA
130 TCCCGCTACCACAACCCTCAGTCCAG-CCA
* *
15755253 AT-CTTAGAC-TGGGAATGAACTCCATATGCATAAG-TCAACCCACGAAACGAGCGTGCGGGTGC
1 ATGCTTAGACAT-GGAATGAACTCCATATGCCTAAGCT-AACCCACGAAACGAGCGTGCGGGCGC
* ** * * *
15755315 TGAGCCGATCAAAGAGGTATAAAGCGCAAGCCGGGGATCGGCCC-AGT-CCCCTTCCGTGCTGTC
64 TGAGCCGATCAAAGAGGTAGAAAGAACAAGCCGAGGATCGGCCCGA-TCCCCCCTACGTGCTGTC
* ** *
15755378 GGTCCCGCTACCACAACCCTTGGTCCAG-CT
128 GATCCCGCTACCACAACCCTCAGTCCAGCCA
* * * *
15755408 GTGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCACAAAACGGGCGTGCGGGC
1 AT-GCTTAGACATGGAATGAACTCCATATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGC
15755470 ACTCAGTCGG
Statistics
Matches: 177, Mismatches: 32, Indels: 18
0.78 0.14 0.08
Matches are distributed among these distances:
155 2 0.01
157 86 0.49
158 87 0.49
159 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (158 bp):
ATGCTTAGACATGGAATGAACTCCATATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCGCTG
AGCCGATCAAAGAGGTAGAAAGAACAAGCCGAGGATCGGCCCGATCCCCCCTACGTGCTGTCGAT
CCCGCTACCACAACCCTCAGTCCAGCCA
Found at i:15760876 original size:158 final size:158
Alignment explanation
Indices: 15760569--15760878 Score: 417
Period size: 158 Copynumber: 2.0 Consensus size: 158
15760559 TCAGAGTCTG
* * * * *
15760569 ATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
1 ATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCACTCA
* *
15760634 ACCGACCGGAGAGGCAGAATGCACAAGCCAGGGATTAGCCCGATCCCCTCTACGTGCTGTCGATC
66 ACCGACCGAAGAGGCAGAATGCACAAGCCAGGGATTAGCCCGATCCCCTCTACGTGCTATCGATC
** *
15760699 TTGCTACGACAACCATCGGTCTCATCCA
131 TCACTACCACAACCATCGGTCTCATCCA
* *
15760727 ATCTTAGACTAGGAATGAACTCCGTATGCCTAAG-CATA-CAACGAAACGAGCGTGTGGGCACTG
1 ATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA-ACCAACGAAACGAGCGTGCGGGCACTC
* * * * *
15760790 AGCCGACCGAAGAGGCATAATGCGCAAGCCAGGGATTAGCCCGATCCCCCTCTGCGTGCTATCGG
65 AACCGACCGAAGAGGCAGAATGCACAAGCCAGGGATTAGCCCGAT-CCCCTCTACGTGCTATCGA
* *
15760855 TCTCACTGCCACAACCTTCGGTCT
129 TCTCACTACCACAACCATCGGTCT
15760879 GGCTGGGGCT
Statistics
Matches: 131, Mismatches: 19, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
157 63 0.48
158 68 0.52
ACGTcount: A:0.26, C:0.30, G:0.25, T:0.19
Consensus pattern (158 bp):
ATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCACTCA
ACCGACCGAAGAGGCAGAATGCACAAGCCAGGGATTAGCCCGATCCCCTCTACGTGCTATCGATC
TCACTACCACAACCATCGGTCTCATCCA
Found at i:15761086 original size:26 final size:26
Alignment explanation
Indices: 15761046--15761100 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
15761036 TGGTCTGATT
**
15761046 TTAGACTGGGAATGAACTTTGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
* *
15761072 TTAGATTGGGGATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
15761098 TTA
1 TTA
15761101 AGTCCACCCA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.13, G:0.27, T:0.35
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:15761803 original size:26 final size:26
Alignment explanation
Indices: 15761763--15761815 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15761753 GGCTCAAACT
*
15761763 CTTAGACTGGTAATGAACTCTGTATG
1 CTTAGACTGGTAATGAACTCCGTATG
15761789 CTTAGACATGG-AATGAACTCCGTATG
1 CTTAGAC-TGGTAATGAACTCCGTATG
15761815 C
1 C
15761816 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGTAATGAACTCCGTATG
Found at i:15762253 original size:26 final size:26
Alignment explanation
Indices: 15762223--15762275 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15762213 GTTGGCTTAG
*
15762223 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
15762249 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15762275 G
1 G
15762276 ATAGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15762956 original size:26 final size:26
Alignment explanation
Indices: 15762920--15762972 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15762910 GTTGGCTTAG
*
15762920 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTACCA-GTCTAA
15762946 GCATACAGAGTTCATTACCAGTCTAA
1 GCATACAGAGTTCATTACCAGTCTAA
15762972 G
1 G
15762973 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTACCAGTCTAA
Found at i:15763669 original size:26 final size:26
Alignment explanation
Indices: 15763635--15763689 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
15763625 TGGGTGGACT
**
15763635 TAAGCATACGGAGTTCATCCCCAATC
1 TAAGCATACAAAGTTCATCCCCAATC
* * *
15763661 TAAGTATACAAAGTTCATTCCCAGTC
1 TAAGCATACAAAGTTCATCCCCAATC
15763687 TAA
1 TAA
15763690 AATCAGACCA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.35, C:0.25, G:0.13, T:0.27
Consensus pattern (26 bp):
TAAGCATACAAAGTTCATCCCCAATC
Found at i:15763972 original size:159 final size:158
Alignment explanation
Indices: 15763693--15764167 Score: 458
Period size: 159 Copynumber: 3.0 Consensus size: 158
15763683 AGTCTAAAAT
* * * * * * *
15763693 CAGACC-AGACCGAAGGTTGCGGTATCAAGATCGGCAGCATGCAGGGGGGACCGAGTTGATCCTC
1 CAGACCGA-ACCGAAGGTTACGGCAGCAGGACCGGCAGCATGCAGGGGGGACCGGGTCGATCCTC
* * * * * *
15763757 GATTTACGCATTCTGCCTCTCCGACCGACTGAGCGCCTGCAC-TTCCGTTTCATGGGTTGGCTTA
65 GACTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGAACGCT-CGTTTCGTGGGTTGGCTTA
*
15763821 GGCATAGGGAGTTCATTCCATGTCTAAGCC
129 GGCATACGGAGTTCATTCCATGTCTAAGCC
* * * *
15763851 CTAG-CC-AGACCGAAGGTTATGGCAGTAGGACCGGCAGCACGCAGAAGGGGACCGGGTCGATCC
1 C-AGACCGA-ACCGAAGGTTACGGCAGCAGGACCGGCAGCATGCAG-GGGGGACCGGGTCGATCC
* * * * * * *
15763914 TCGGCTTACGCATTATGCCTATCCGATCGGCTTAGCGCCCGAACGCTCATTTCGTGGGTTGACTT
63 TCGACTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGAACGCTCGTTTCGTGGGTTGGCTT
* **
15763979 ATGCATACGGAGTTCATTCCCA-GTCTAAGAT
128 AGGCATACGGAGTTCATT-CCATGTCTAAGCC
* * * * * * *
15764010 CAGACCGAACCGAGGGTTGCGGTAGCAGGATCGACAGCATGCAGGGGGGGATCGGGTCGGTCCTC
1 CAGACCGAACCGAAGGTTACGGCAGCAGGACCGGCAGCATGCA-GGGGGGACCGGGTCGATCCTC
* * * * * *
15764075 GACTTATGCATTCTACCTCTTCGACCAGCTGAGTGCCC-ACACGCTCGTTTCGGGGGTTGGCTTA
65 GACTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGA-ACGCTCGTTTCGTGGGTTGGCTTA
*
15764139 GGCATACGGAGTTCATTCCATGTGTAAGC
129 GGCATACGGAGTTCATTCCATGTCTAAGC
15764168 ATACAGAGTT
Statistics
Matches: 253, Mismatches: 55, Indels: 17
0.78 0.17 0.05
Matches are distributed among these distances:
158 39 0.15
159 208 0.82
160 6 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
CAGACCGAACCGAAGGTTACGGCAGCAGGACCGGCAGCATGCAGGGGGGACCGGGTCGATCCTCG
ACTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGAACGCTCGTTTCGTGGGTTGGCTTAGG
CATACGGAGTTCATTCCATGTCTAAGCC
Found at i:15764192 original size:26 final size:26
Alignment explanation
Indices: 15764140--15764192 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15764130 GTTGGCTTAG
* *
15764140 GCATACGGAGTTCATTCCATGTGTAA
1 GCATACAGAGTTCATTCCATGTCTAA
15764166 GCATACAGAGTTCATTCTCA-GTCTAA
1 GCATACAGAGTTCATTC-CATGTCTAA
15764192 G
1 G
15764193 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:15764386 original size:26 final size:25
Alignment explanation
Indices: 15764350--15764401 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
15764340 GTTAACTTAG
*
15764350 GCATACGGAGTTCATCCCCTGTCTAA
1 GCATACGGAGTTCAT-CCCAGTCTAA
15764376 GCATACGGAGTTCATCCCAGTCTAA
1 GCATACGGAGTTCATCCCAGTCTAA
15764401 G
1 G
15764402 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 10 0.40
26 15 0.60
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (25 bp):
GCATACGGAGTTCATCCCAGTCTAA
Found at i:15764726 original size:26 final size:26
Alignment explanation
Indices: 15764690--15764742 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15764680 GTTGGCTTAG
*
15764690 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
15764716 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15764742 G
1 G
15764743 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15765437 original size:26 final size:26
Alignment explanation
Indices: 15765407--15765461 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
15765397 TGGGTGGACT
15765407 TAAGCATACAAAGTTCATCCCCAGTC
1 TAAGCATACAAAGTTCATCCCCAGTC
*
15765433 TAAGCATACAAAGTTCATTCCCAGTC
1 TAAGCATACAAAGTTCATCCCCAGTC
15765459 TAA
1 TAA
15765462 AATCAGACCA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.36, C:0.27, G:0.11, T:0.25
Consensus pattern (26 bp):
TAAGCATACAAAGTTCATCCCCAGTC
Found at i:15766151 original size:26 final size:25
Alignment explanation
Indices: 15766121--15766172 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
15766111 GTTAACTTAG
*
15766121 GCATACGGAGTTCATCCCCTGTCTAA
1 GCATACGGAGTTCAT-CCCAGTCTAA
15766147 GCATACGGAGTTCATCCCAGTCTAA
1 GCATACGGAGTTCATCCCAGTCTAA
15766172 G
1 G
15766173 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 10 0.40
26 15 0.60
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (25 bp):
GCATACGGAGTTCATCCCAGTCTAA
Found at i:15766729 original size:705 final size:708
Alignment explanation
Indices: 15765387--15766737 Score: 1526
Period size: 705 Copynumber: 1.9 Consensus size: 708
15765377 GCGTTCGAAT
* *
15765387 GCTCGTTTCATGGGTGGACTTAAGCATACAAAGTTCATCCCCAGTCTAAGCATACAAAGTTCATT
1 GCTCATTTCATGGGTGAACTTAAGCATACAAAGTTCATCCCCAGTCTAAGCATACAAAGTTCATT
* * * *
15765452 CCCAGTCTAAAATCAGACCAGACCAAAGGTTACGGTAGTAAGATCGGTAGCATGTAGGGGGGAAT
66 CCCAGTCTAAAATCAGACCAGACCAAAGGGTACGGTAGTAAGATCGATAGCACGCAGGGGGGAAT
* * * *
15765517 CGAGCCGATCCCCGGTTTACGTATTCTGCCTCTCCGACCGACTGAACGCCTGCACTTCTGTTTCA
131 CGAGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGACTGAACGCCCGCACCTCTGTTTCA
* *
15765582 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGATCGAGGGTTATGGC
196 TGGGTTGGCTTAGGCATAGGGAGTTCATTACATGTCTAAGCCCCAGCCAGACCGAGGGTTATGGC
* * * * * *
15765647 AGTAGGACTGACAGCACGTAGAAGGGGACCGGGTCGATCCCCGGCTTACGCATTATGCCTCTTCG
261 AGCAGAACAGACAGCACGTAGAAGGGGACCGAGTCGATCCCCGACTTACGCATTATGCCTCTCCG
* * *
15765712 ATCGGCTTAGTGCCCGAACGCTCATTTCATGGGTTGACTTATGCATACGGAGTTCATTCCCAGTC
326 ATAGGCTCAGTGCCCGAACGCTCATTTCATGGGTTGACTTAGGCATACGGAG----TTCCCAGTC
* ** * * *
15765777 TAAGATTAGACCGAATCGAGGGTTACGACAGCAGGATCGATAGCACACAGGAGGGGATCGGGTCA
387 TAAGATCAGACCGAATCGAGGGTTACGACAGCAAAATCGACAGCACACAGGAGGAGACCGGGTCA
* * ** *
15765842 GTCCTCGACTTACGCATTCTACCTTTCCGGCCAACTGAGTGCCCACATGCTCGTTTCGGGGGTTA
452 GTCCTCGACTTACGCATTCTACCTTTCCGACCAACTAAGCACCCACACGCTCGTTTCGGGGGTTA
*
15765907 GCTTAGGCATACGAAGTTTATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAA
517 GCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAA
* * * * *
15765972 CCAGATCGAGAGTTACGATAGTAGCACCAACTGCAAGATCGATAACACGTAGG-GGGACCGGGTT
582 CCAGACCAAGAGTTACGACAGCAGCACCAACAGCAAGATCGATAACACGTAGGAGGGACCGGGTT
15766036 GATCCTCGGCTTGTGTATTCTGCCTCTCCGACCGGCCTCTTCGACCGGCTGAGTGCCCGTAC
647 GATCCTCGGCTTGTGTATTCTGCCTCTCCGACCGGCCTCTTCGACCGGCTGAGTGCCCGTAC
* * ** * **
15766098 GCTCATTTCATGGGTTAACTTAGGCATACGGAGTTCATCCCCTGTCTAAGCATACGGAGTTCA-T
1 GCTCATTTCATGGGTGAACTTAAGCATACAAAGTTCATCCCCAGTCTAAGCATACAAAGTTCATT
* * * * *
15766162 CCCAGTCTAAGATCAGATCAGACC-GAGGGTAGCGGTAGTAGGATCGATAGTACGCAGGGGGG-A
66 CCCAGTCTAAAATCAGACCAGACCAAAGGGTA-CGGTAGTAAGATCGATAGCACGCAGGGGGGAA
* * ** * * * * *
15766225 TCGGGCTGATCCCCGGCTTGTGCATTCTGGCTCTTCGACCGGCTGAGCGCCCGTACGCTC-GTTT
130 TCGAGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGACTGAACGCCCGCAC-CTCTGTTT
* * *
15766289 CATGGGTTGGCTTAGGCATAGGGAGTTTATTACATGTCTAAGCCCCAGTCAGACCGAGGGTTGTG
194 CATGGGTTGGCTTAGGCATAGGGAGTTCATTACATGTCTAAGCCCCAGCCAGACCGAGGGTTATG
* * **
15766354 GCAGCAGAACCAG-CAGCACGTAGAGGGGGGACCGAGTCGATCCCCGATTTGTGCATTATGCCTC
259 GCAGCAGAA-CAGACAGCACGTAGA-AGGGGACCGAGTCGATCCCCGACTTACGCATTATGCCTC
* * * ** *
15766418 TCCGGTAGGCTCAGTGCCTGAACGTTCATTTTGTGGGTTGACTTAGGCATACGGAG-TCCTAGTC
322 TCCGATAGGCTCAGTGCCCGAACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCCCAGTC
* * * * * * * **
15766482 TAAGATCGGATCGGATCGAGGGTTGCTG-TAGTAAAATTGACAGCACGTTAGG-GGAGACCGGG-
387 TAAGATCAGACCGAATCGAGGGTTAC-GACAGCAAAATCGACAGCAC-ACAGGAGGAGACCGGGT
* * *** ** *
15766544 CTGGTTCC-C-AGCTTGCGCATTCTACCTCTT-CGACTGGCTAAGCACCCGTACGCTCGTTTCGT
450 C-AG-TCCTCGA-CTTACGCATTCTACCT-TTCCGACCAACTAAGCACCCACACGCTCGTTTCGG
* * *
15766606 GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATAC-GAAGTTCATTCCCAGTTTAA
511 GGGTTAGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACAG-AGTTCATTCCCAGTCTAA
* * * ** * * * * **
15766670 GATCGGACCGGACCAAGGGTTGTGACAGCATG-ACCAGCAGTAGGATCGGTAGGACGTAGGAGGG
575 GATCGAACCAGACCAAGAGTTACGACAGCA-GCACCAACAGCAAGATCGATAACACGTAGGAGGG
15766734 ACCG
639 ACCG
15766738 AGCCAATTCC
Statistics
Matches: 524, Mismatches: 103, Indels: 31
0.80 0.16 0.05
Matches are distributed among these distances:
704 3 0.01
705 186 0.35
706 17 0.03
709 132 0.25
710 132 0.25
711 54 0.10
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.25
Consensus pattern (708 bp):
GCTCATTTCATGGGTGAACTTAAGCATACAAAGTTCATCCCCAGTCTAAGCATACAAAGTTCATT
CCCAGTCTAAAATCAGACCAGACCAAAGGGTACGGTAGTAAGATCGATAGCACGCAGGGGGGAAT
CGAGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGACTGAACGCCCGCACCTCTGTTTCA
TGGGTTGGCTTAGGCATAGGGAGTTCATTACATGTCTAAGCCCCAGCCAGACCGAGGGTTATGGC
AGCAGAACAGACAGCACGTAGAAGGGGACCGAGTCGATCCCCGACTTACGCATTATGCCTCTCCG
ATAGGCTCAGTGCCCGAACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCCCAGTCTAAG
ATCAGACCGAATCGAGGGTTACGACAGCAAAATCGACAGCACACAGGAGGAGACCGGGTCAGTCC
TCGACTTACGCATTCTACCTTTCCGACCAACTAAGCACCCACACGCTCGTTTCGGGGGTTAGCTT
AGGCATACGAAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCAG
ACCAAGAGTTACGACAGCAGCACCAACAGCAAGATCGATAACACGTAGGAGGGACCGGGTTGATC
CTCGGCTTGTGTATTCTGCCTCTCCGACCGGCCTCTTCGACCGGCTGAGTGCCCGTAC
Found at i:15767819 original size:26 final size:25
Alignment explanation
Indices: 15767790--15767841 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
15767780 GTTGACTTTG
* *
15767790 GCATACGGAGTTTATCCTCAGTCTAA
1 GCATACGGAGTTCATCC-CAATCTAA
*
15767816 GCATATGGAGTTCATCCCAATCTAA
1 GCATACGGAGTTCATCCCAATCTAA
15767841 G
1 G
15767842 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 8 0.35
26 15 0.65
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATCCCAATCTAA
Found at i:15768125 original size:160 final size:158
Alignment explanation
Indices: 15767924--15768316 Score: 429
Period size: 160 Copynumber: 2.5 Consensus size: 158
15767914 CACATTCTGG
*
15767924 CTCTCCGATCGACTGAGCGCCC-ACACGCTCG-TTCTGTGGGTTGGCTTAGGCATAGGGAGTTCA
1 CTCTCCGATCGACTGAGCGCCCGA-ACGCTCGTTTC-GTGGGTTGGCTTAGGCATACGGAGTTCA
* * * * *
15767987 TTCCATGTCTAAGCCCCAG-TCAGACCAAGGGTTGTGGCAGCGAGACCAG-TAGCACGTAAAGGG
64 TTCCATGTCTAAG-ACCAGACCAGACCAAGGGTTGTAGCAGCAAGA-CAGACAGCACGT--AGGG
* * * *
15768050 GGGA-CTGGGCTGATCCCTGACTTACGCATTATGC
125 GGGATCAGGGCAG-TCCCCGACTTACGCATTATAC
* ** *
15768084 CTCTCCGATCGGCTCCGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
1 CTCTCCGATCGACTGAGCGCCCGAACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT
* * **
15768149 CCCA-GTCTAAGATCAGACCAGACCAAGGGTTGTAGTAGCAAGATTGACAGCACGTAGGGGGGAT
66 -CCATGTCTAAGACCAGACCAGACCAAGGGTTGTAGCAGCAAGACAGACAGCACGTAGGGGGGAT
* ** *
15768213 CAGGTCAGTCCCCGACTTGTGCATTTTAC
130 CAGGGCAGTCCCCGACTTACGCATTATAC
* * * * *
15768242 CTCTCTGACCGACTGAGCACCCGCACGCTCGTTTCGTGCGTTGGCTTAGGCATACGGAGTTCATT
1 CTCTCCGATCGACTGAGCGCCCGAACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT
15768307 CCATGTCTAA
66 CCATGTCTAA
15768317 CCATGTGAAG
Statistics
Matches: 195, Mismatches: 31, Indels: 16
0.81 0.13 0.07
Matches are distributed among these distances:
157 3 0.02
158 86 0.44
159 9 0.05
160 90 0.46
161 7 0.04
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.24
Consensus pattern (158 bp):
CTCTCCGATCGACTGAGCGCCCGAACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT
CCATGTCTAAGACCAGACCAGACCAAGGGTTGTAGCAGCAAGACAGACAGCACGTAGGGGGGATC
AGGGCAGTCCCCGACTTACGCATTATAC
Found at i:15768525 original size:26 final size:26
Alignment explanation
Indices: 15768489--15768541 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15768479 ATTGACCTAG
15768489 GCATACAGAGTTC-TTCCCCAGTCTAA
1 GCATACAGAGTTCATT-CCCAGTCTAA
* *
15768515 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15768541 G
1 G
15768542 ATAGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15768868 original size:26 final size:26
Alignment explanation
Indices: 15768832--15768884 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15768822 GTTGGCTTAG
*
15768832 GCATACGGAGTTCATTCCAAGTGTAA
1 GCATACGGAGTTCATTCCAAGTATAA
* *
15768858 GCATATGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCATTCCAAGTATAA
15768884 G
1 G
15768885 AGTTTGAGCT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTATAA
Found at i:15770085 original size:26 final size:26
Alignment explanation
Indices: 15770056--15770108 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15770046 GTTGACTTAG
15770056 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
15770082 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15770108 G
1 G
15770109 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15770655 original size:196 final size:196
Alignment explanation
Indices: 15770316--15770678 Score: 471
Period size: 196 Copynumber: 1.9 Consensus size: 196
15770306 GAGGGTTGTG
* * *
15770316 GCAGCAGGATCGACAGCACGTAAGGGGGATCAGGCCGATCCCCGACTTACGCATTCTGCCTCTTC
1 GCAGCAGGATCGACAGCACGTAAGGGGGACCAGGCCGATCCCCGACTTACGCACTCTACCTCTTC
* * * * * * * *
15770381 GGCCGGTTGAGTGCCCGCACGCTCGTTTCATGGATTGGCTTAGGCATACATAGTTCATTCCATGT
66 AGCCGGCTGAGCGCCCACACGCTCGTTTCATGGATTGACTTAGGCAAACAGAGTTCATCCCATGT
15770446 CTAAGCATACGGAGTTCATTCCCAGTCAAAGATCAGATCGGACCGAGGGTTACAGCAGCAGGAGT
131 CTAAGCATACGGAGTTCATTCCCAGTCAAAGATCAGATCGGACCGAGGGTTACAGCAGCAGGAGT
15770511 A
196 A
* * * * *
15770512 GCAGTAGGATCGATAGCACGTAAGGGGGACC-GAGCTGATCCCTGACTTATGCACTCTACCT-TT
1 GCAGCAGGATCGACAGCACGTAAGGGGGACCAG-GCCGATCCCCGACTTACGCACTCTACCTCTT
* * * * *
15770575 CCAGTCGGCTGAGCGCTCACACGCTCGTTTTATGGGTTGACTTAGGCAAACGGAGTTCATCCC-T
65 -CAGCCGGCTGAGCGCCCACACGCTCGTTTCATGGATTGACTTAGGCAAACAGAGTTCATCCCAT
* *
15770639 AGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGA
129 -GTCTAAGCATACGGAGTTCATTCCCAGTCAAAGATCAGA
15770679 CTAGATCGAG
Statistics
Matches: 141, Mismatches: 23, Indels: 6
0.83 0.14 0.04
Matches are distributed among these distances:
195 4 0.03
196 137 0.97
ACGTcount: A:0.24, C:0.26, G:0.26, T:0.24
Consensus pattern (196 bp):
GCAGCAGGATCGACAGCACGTAAGGGGGACCAGGCCGATCCCCGACTTACGCACTCTACCTCTTC
AGCCGGCTGAGCGCCCACACGCTCGTTTCATGGATTGACTTAGGCAAACAGAGTTCATCCCATGT
CTAAGCATACGGAGTTCATTCCCAGTCAAAGATCAGATCGGACCGAGGGTTACAGCAGCAGGAGT
A
Found at i:15771298 original size:184 final size:184
Alignment explanation
Indices: 15770963--15771358 Score: 453
Period size: 184 Copynumber: 2.2 Consensus size: 184
15770953 GTTGACTTAG
* ** * *
15770963 GCATAC-GAAGTTCATCCCCAGTCTAAGATCAGAACAGACTGAGGGTTACGACAGTAGGATTGAT
1 GCATACAG-AGTTCATTCCCAGTCTAAGATCAGAACAGACTGAGGGTTACGACAACAGGATCGAC
* ** *
15771027 AGCACGCAGGGGGGACCGGGTCAGTCTTCGACTTACGCATTTTACCTCTCCGACTGGCTGAGCGC
65 AGAACGCAGGGGGGACCGGGTCAGTCCCCGACTTACGCATTTTACCTCTCCGACTGGCTGAGCAC
* **
15771092 CTGCACACTCATTTTGTGGGTTGACTTAGGCATACGGAGTTC-TTCCCCAGTCTAA
130 CCGCACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCCAGTCTAA
* * * *
15771147 GCATATAGAGTTCATTCCCAGTCTAAGATCAGATA-GGA-TCGAGGGTTACGGCAACAGGATCGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGA-ACAGACT-GAGGGTTACGACAACAGGATCGA
* * * * *
15771210 CAGAACGTAGGGGGGATCGGGTC-GATCCCCGACTTGCGTATTTTGCCTCTCCGA-TCGGCTGAG
64 CAGAACGCAGGGGGGACCGGGTCAG-TCCCCGACTTACGCATTTTACCTCTCCGACT-GGCTGAG
* * * *
15771273 CACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCTGTCTAA
127 CACCCGCACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
15771331 GCATACGGAGTTCATTCCCAGTGTAAGA
1 GCATACAGAGTTCATTCCCAGTCTAAGA
15771359 GTTTGAGCCA
Statistics
Matches: 178, Mismatches: 28, Indels: 12
0.82 0.13 0.06
Matches are distributed among these distances:
183 3 0.02
184 171 0.96
185 4 0.02
ACGTcount: A:0.23, C:0.25, G:0.27, T:0.25
Consensus pattern (184 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGAACAGACTGAGGGTTACGACAACAGGATCGACA
GAACGCAGGGGGGACCGGGTCAGTCCCCGACTTACGCATTTTACCTCTCCGACTGGCTGAGCACC
CGCACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:15771357 original size:26 final size:26
Alignment explanation
Indices: 15771305--15771357 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15771295 GTTGGCTTAG
*
15771305 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15771331 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15771357 G
1 G
15771358 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15772500 original size:26 final size:26
Alignment explanation
Indices: 15772471--15772523 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15772461 GTTGACTTAG
15772471 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15772497 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15772523 G
1 G
15772524 ATCAAACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15773245 original size:184 final size:184
Alignment explanation
Indices: 15772681--15773246 Score: 598
Period size: 196 Copynumber: 3.0 Consensus size: 184
15772671 GTTGACTTAG
* * ** * *
15772681 GCATACGGAGTTCATCCCTAGTCTAAGATCGGACCAGACCGAGGGTTATGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGTAGGATCGACA
* * * * * *
15772746 GCACGTAAGGGGGATCGGG-TCGGTCCCCGGCTTACGCATTCTGCCTCTTCGGTCGGTTGAGTGC
66 GCACGTAGGGGGGATCGGGCT-GATCCCCGACTTGCGCATTCTACCTCTCCGGTCGGTTGAGTGC
*
15772810 CCGCACGCTCGTTTCATGGATTGGCTTAGGCATACGTAGTTCATTCCATGTCTAA
130 CCGCACGCTCGTTTCATGGATTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * * *
15772865 GCATACAGAGTTCATTCCCAGTCAAAGATCAGATCGGACCGAGGGTTACAGCAGCAGGAGCAGCA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTT------GC----G-A-CA
* *
15772930 GTAGGATCGACAGCACGTAGGGGGGACCGAGCTGATCCCCGACTTGCGCATTCTACCTCTCCGGT
54 GTAGGATCGACAGCACGTAGGGGGGATCGGGCTGATCCCCGACTTGCGCATTCTACCTCTCCGGT
* * * * * * * * *
15772995 CGGCTAAGCGCTCGCACGCTCGTTTTATGGGTTGACTTAGGCAAACGGAGTTCA-TCCCTAGTCT
119 CGGTTGAGTGCCCGCACGCTCGTTTCATGGATTGGCTTAGGCATACGGAGTTCATTCCAT-GTCT
15773059 AA
183 AA
* *
15773061 GCATACGGAGTTCATTCCTAGTCTAAGATCAGAGCAGATCGAGGGTTGCGACAGTAGGATCGACA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGTAGGATCGACA
* * * * **
15773126 GCACGCAGGGGGGATCGGGCTAATCCCTGACTTGGGCATTCTACCTCTCCGACCGGTTGAGTGCC
66 GCACGTAGGGGGGATCGGGCTGATCCCCGACTTGCGCATTCTACCTCTCCGGTCGGTTGAGTGCC
* * * * *
15773191 CGCATGC-CTGTTTCGTGCATTGGCTTAGCCATAGGGAGTTCATTCCATGTCTAA
131 CGCACGCTC-GTTTCATGGATTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
15773245 GC
1 GC
15773247 CCCAGTCGGA
Statistics
Matches: 309, Mismatches: 57, Indels: 32
0.78 0.14 0.08
Matches are distributed among these distances:
183 1 0.00
184 146 0.47
185 5 0.02
186 1 0.00
190 2 0.01
194 1 0.00
195 4 0.01
196 148 0.48
197 1 0.00
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.23
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGTAGGATCGACA
GCACGTAGGGGGGATCGGGCTGATCCCCGACTTGCGCATTCTACCTCTCCGGTCGGTTGAGTGCC
CGCACGCTCGTTTCATGGATTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:15773401 original size:158 final size:159
Alignment explanation
Indices: 15773200--15773563 Score: 364
Period size: 158 Copynumber: 2.3 Consensus size: 159
15773190 CCGCATGCCT
** * * * * * * *
15773200 GTTTCGTGCATTGGCTTAGCCATAGGGAGTTCAT-TCCATGTCTAAGCCCCAG-TCGGACCGAGA
1 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCACCAGAACAGACCGAGA
* * * *
15773263 GTTGTGGCAGTGGGACCGACAGCACACAGAGGGGGA-CGAAAC-GATCC-CTGTCTTACGCATTA
65 GTTGCGGCAGTAGGACCGACAGCACACAG-GAGGGACCGAAACAG-TCCTC-GACTTACGCATTA
* **
15773325 TGCCTCTCCGACGGGCTTAACGCCCGA-ACGTTC
127 TGCCTCTCCGACGGGCTGAACG-CCGACACACTC
* *
15773358 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG-ATCAGAACAGACCGAGGG
1 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCACCAGAACAGACCGAGAG
* * *** * *
15773422 TTGCGGCAGTAGGATCGATAGCACACAGGAGGGACCGGGTCAGTCTTCGACTTACGCATTTTGCC
66 TTGCGGCAGTAGGACCGACAGCACACAGGAGGGACCGAAACAGTCCTCGACTTACGCATTATGCC
** *
15773487 TCTCCGATTGGCTGAACGCCTACACACTC
131 TCTCCGACGGGCTGAACGCCGACACACTC
* *
15773516 ATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCA
1 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCA
15773564 AACAGAGTTC
Statistics
Matches: 169, Mismatches: 30, Indels: 13
0.80 0.14 0.06
Matches are distributed among these distances:
157 11 0.07
158 152 0.90
159 6 0.04
ACGTcount: A:0.23, C:0.26, G:0.27, T:0.24
Consensus pattern (159 bp):
GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCACCAGAACAGACCGAGAG
TTGCGGCAGTAGGACCGACAGCACACAGGAGGGACCGAAACAGTCCTCGACTTACGCATTATGCC
TCTCCGACGGGCTGAACGCCGACACACTC
Found at i:15773712 original size:184 final size:183
Alignment explanation
Indices: 15773384--15773772 Score: 449
Period size: 184 Copynumber: 2.1 Consensus size: 183
15773374 TAGGCATACG
* ** * * *
15773384 GAGTTCATCCCCAGTCTAAGATCAGAACAGACCGAGGGTTGCGGCAGTAGGATCGATAGCACACA
1 GAGTTCATTCCCAGTCTAAGATCAGAACAGACCGAGGGTTGCGGCAACAAGATCGACAGAACACA
** ** * *
15773449 GGAGGGACCGGGTCAGTCTTCGACTTACGCATTTTGCCTCTCCGATTGGCTGAACGCCTACACAC
66 GGAGGGACCGGGTCAGTCCCCGACTTACGCATTTTGCCTCTCCGACCGGCTGAACACCCACACAC
* *
15773514 TCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCAAAC
131 CCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCAAAC
* * *
15773567 AGAGTTCATTCCCAGTCTAAGATCAG-ACAAGATCGAGGGTTGCGGCAACAAGATCGGCAGAACG
1 -GAGTTCATTCCCAGTCTAAGATCAGAAC-AGACCGAGGGTTGCGGCAACAAGATCGACAGAACA
* * * * * *
15773631 TAGGGGGGATCGGGTC-GATCCCCGACTTGCGCATTTTGCCTCTCCGACCGGCTGAGCACCCGCA
64 CAGGAGGGACCGGGTCAG-TCCCCGACTTACGCATTTTGCCTCTCCGACCGGCTGAACACCCACA
* * * * * * *
15773695 CGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCTGTCTAAGCATAC
128 CACCCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCAAAC
*
15773751 GAAGTTCATTCCCAGTGTAAGA
1 G-AGTTCATTCCCAGTCTAAGA
15773773 GTTTGAGCCA
Statistics
Matches: 171, Mismatches: 31, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
183 4 0.02
184 167 0.98
ACGTcount: A:0.24, C:0.27, G:0.26, T:0.23
Consensus pattern (183 bp):
GAGTTCATTCCCAGTCTAAGATCAGAACAGACCGAGGGTTGCGGCAACAAGATCGACAGAACACA
GGAGGGACCGGGTCAGTCCCCGACTTACGCATTTTGCCTCTCCGACCGGCTGAACACCCACACAC
CCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCAAAC
Found at i:15773771 original size:26 final size:26
Alignment explanation
Indices: 15773719--15773771 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15773709 GTTGGCTTAG
* *
15773719 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
15773745 GCATACGAAGTTCATTCCCAGTGTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15773771 G
1 G
15773772 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15774896 original size:179 final size:182
Alignment explanation
Indices: 15774675--15775129 Score: 501
Period size: 184 Copynumber: 2.5 Consensus size: 182
15774665 CCTCTCCTGT
* * ** * * * *
15774675 CGGCTGAGCGCCCGTATGCTCGTTCCGTGGGTAGACTTAGGCATACAGAGTTCATCCCCA-GTCT
1 CGGCTGAGCACCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCAT-TCCATGTCT
* * * * *
15774739 AAGCAGACGGAGTTCATTTCCAGTCTAAGATCGGACCAGACCGAGGGTTGC-AGC-GG-TAGGGT
65 AAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAACAGACCGAGGGTTGCGAGCAGGAT-CGGT
* * **
15774801 TGCATGCAG-GGGGACTGGG-CTGGTACCCGCCTTACGCATTC-TGCCTCTCCGAC
129 AGCATGCAGTGGGGACTGGGTC-GATACCCGCCTTACGCATTCAAACC-CTCCGAC
* * * * *
15774854 CGGTTGAGTACCCGTACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCAATGTCTA
1 CGGCTGAGCACCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTA
* * * *
15774919 AGCATACGGAGTTCGTTCCCAGCCTAAGATCAGAACGGACTGAGGGTTGCGGTAGCAGGATCGGT
66 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGAACAGACCGAGGGTTGC-G-AGCAGGATCGGT
* * * *
15774984 AGCATGTAGTGGGGACTGGGTCGATCCCCGGCTTGCGCATTCAAACCCTCCGAC
129 AGCATGCAGTGGGGACTGGGTCGATACCCGCCTTACGCATTCAAACCCTCCGAC
* * * *
15775038 CGGCTGAGCACCCGCACGCTCGTTTCATTGGTTCGCTTAGGCATACAGAGTTCATTCCATGTCTA
1 CGGCTGAGCACCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTA
15775103 AGCATACGGAGTTCATTCCCAGTCTAA
66 AGCATACGGAGTTCATTCCCAGTCTAA
15775130 AAGTTTGTGC
Statistics
Matches: 228, Mismatches: 39, Indels: 13
0.81 0.14 0.05
Matches are distributed among these distances:
178 2 0.01
179 93 0.41
182 3 0.01
183 12 0.05
184 115 0.50
185 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (182 bp):
CGGCTGAGCACCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTA
AGCATACGGAGTTCATTCCCAGTCTAAGATCAGAACAGACCGAGGGTTGCGAGCAGGATCGGTAG
CATGCAGTGGGGACTGGGTCGATACCCGCCTTACGCATTCAAACCCTCCGAC
Found at i:15775109 original size:26 final size:26
Alignment explanation
Indices: 15775078--15775129 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15775068 GTTCGCTTAG
15775078 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
15775104 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15775130 AAGTTTGTGC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15777200 original size:27 final size:27
Alignment explanation
Indices: 15777170--15777226 Score: 71
Period size: 26 Copynumber: 2.1 Consensus size: 27
15777160 TTCGTGGGTT
*
15777170 GTCTTAGGCATACAAAGTTCATCCCCA
1 GTCTTAAGCATACAAAGTTCATCCCCA
* **
15777197 GTC-TAAGCATACAGAGTTCATTTCCA
1 GTCTTAAGCATACAAAGTTCATCCCCA
15777223 GTCT
1 GTCT
15777227 AAGAACAGGA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (27 bp):
GTCTTAAGCATACAAAGTTCATCCCCA
Found at i:15777207 original size:26 final size:26
Alignment explanation
Indices: 15777177--15777229 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15777167 GTTGTCTTAG
15777177 GCATACAAAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
* **
15777203 GCATACAGAGTTCATTTCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
15777229 G
1 G
15777230 AACAGGATGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:15777543 original size:26 final size:26
Alignment explanation
Indices: 15777507--15777559 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15777497 GTTGACTTAG
15777507 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
15777533 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
15777559 G
1 G
15777560 ATTAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:15777742 original size:26 final size:26
Alignment explanation
Indices: 15777691--15777743 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15777681 GTTGGTTTAG
*
15777691 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGCCTAA
15777717 GCATACGGAGTTCATTCCCA-GCCTAA
1 GCATACGGAGTTCATT-CCATGCCTAA
15777743 G
1 G
15777744 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGCCTAA
Found at i:15778416 original size:26 final size:26
Alignment explanation
Indices: 15778386--15778438 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15778376 GTTGACTTAG
*
15778386 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
** *
15778412 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
15778438 G
1 G
15778439 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:15778894 original size:26 final size:26
Alignment explanation
Indices: 15778864--15778916 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15778854 GTTGGCTTAC
15778864 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
15778890 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
15778916 G
1 G
15778917 ATCAAACCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:15779103 original size:26 final size:26
Alignment explanation
Indices: 15779073--15779125 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15779063 GTTGACTTAG
15779073 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
15779099 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15779125 G
1 G
15779126 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15779483 original size:159 final size:158
Alignment explanation
Indices: 15779099--15779507 Score: 347
Period size: 159 Copynumber: 2.6 Consensus size: 158
15779089 CCCAGTCTAA
* * * *
15779099 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACTGGATTGAGGGTTATGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAAATCAGACTGGACTGAGGGTTGTGGCAGCAGGATCGACA
* * * * *
15779164 GCACGCAAAAGGGATCGGGCCAATCCTTGACTTATGCATTCTGCCTCTTCGGTCAGCTGAACGCC
66 GCACGCAAAAGGGATCGGGCCAATCCCTGACTTATGCATTCTGCCTATTCAGCCAGCTCAACGCC
* * * *
15779229 CGTACGCCCGTTTCGTGCGTTGGCTTGG
131 CGAACGCCCATTTCGTGCGTTGACTTAG
* * *** * * ** * * *
15779257 GCAGAGGGAGTTCATT-CCATGTCTAAGCCCCAGTC-AGACCAAGTGTTGTGGCAGCGGGACCTG
1 GCATACGGAGTTCATTCCCA-GTCTAA-AATCAGACTGGACTGAGGGTTGTGGCAGCAGGATC-G
* * *** * * * * *
15779320 -CAGCACGTAGAAGGGGATCGGGTTGATCCCTGACTTGTGCATTTTGCCTATTCAGCCGGTTCAG
63 ACAGCACGCA-AAAGGGATCGGGCCAATCCCTGACTTATGCATTCTGCCTATTCAGCCAGCTCAA
* * *
15779384 TGCCCGAACGCTCATTTCGTGGGTTGACTTAG
127 CGCCCGAACGCCCATTTCGTGCGTTGACTTAG
* * *
15779416 GCATACGGAGTTCATTCCCAGTCTAAAATCGGACTGGAGTGAGGGTTGTGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAAATCAGACTGGACTGAGGGTTGTGGCAGCAGGATCGACA
* ***
15779481 GCACACAGGGGGGGATCGGGCCAATCC
66 GCACGCA-AAAGGGATCGGGCCAATCC
15779508 TCGGCTTGCG
Statistics
Matches: 185, Mismatches: 59, Indels: 13
0.72 0.23 0.05
Matches are distributed among these distances:
157 2 0.01
158 50 0.27
159 130 0.70
160 3 0.02
ACGTcount: A:0.21, C:0.24, G:0.31, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAAATCAGACTGGACTGAGGGTTGTGGCAGCAGGATCGACA
GCACGCAAAAGGGATCGGGCCAATCCCTGACTTATGCATTCTGCCTATTCAGCCAGCTCAACGCC
CGAACGCCCATTTCGTGCGTTGACTTAG
Found at i:15781164 original size:159 final size:159
Alignment explanation
Indices: 15780903--15781350 Score: 467
Period size: 159 Copynumber: 2.8 Consensus size: 159
15780893 TTTCGACAGC
* * * * * * *
15780903 AGGATCGGTAGCACGC-AGGGGGGACAGGGTCGATCCCCGGCTTGCACATTATGCCTCTCCGGTC
1 AGGATCGGCAGCACGCAAGGGGGGACAGGGCCGATCCCCAGCTTACGCATTCTGCCTCTCCGGCC
* * * ** * * * *
15780967 GACTCAGTGCCCAAACGCTCATTTCGTGGGTTGACTTAGGCACACAGAGTTCATTCCCA-GTCTA
66 GGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTA
* *
15781031 AGATC-AGACCATACCAAGGGTCATGATAGT
130 AGACCAAG-CCAGACCAAGGGTCATGATAGT
* *
15781061 AGGATCGACAGCACGCAAGGGGGGACAGGGCCGATCCCCAGCTTACGCATTCTGCCTCTCCGACC
1 AGGATCGGCAGCACGCAAGGGGGGACAGGGCCGATCCCCAGCTTACGCATTCTGCCTCTCCGGCC
* * *
15781126 GGCTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCCAA
66 GGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * ** *
15781191 GCCCAAGCCAGACCGAGGGTTGTGCTAGT
131 GACCAAGCCAGACCAAGGGTCATGATAGT
* * * * ** * *
15781220 GGGA-CTGGCAGCA--CATAGAGGGGGACCGAGCTGATCCCCAGCTTACGCATTCTATCTTTTCG
1 AGGATC-GGCAGCACGCA-AG-GGGGGACAGGGCCGATCCCCAGCTTACGCATTCTGCCTCTCCG
* *
15781282 GCCGGCTGAACGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
63 GCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
15781347 TAAG
128 TAAG
15781351 CATACGGAGT
Statistics
Matches: 241, Mismatches: 43, Indels: 11
0.82 0.15 0.04
Matches are distributed among these distances:
157 2 0.01
158 20 0.08
159 217 0.90
160 2 0.01
ACGTcount: A:0.21, C:0.29, G:0.29, T:0.22
Consensus pattern (159 bp):
AGGATCGGCAGCACGCAAGGGGGGACAGGGCCGATCCCCAGCTTACGCATTCTGCCTCTCCGGCC
GGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
GACCAAGCCAGACCAAGGGTCATGATAGT
Found at i:15781376 original size:26 final size:26
Alignment explanation
Indices: 15781324--15781376 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15781314 GTTGGCTTAG
*
15781324 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTATAA
15781350 GCATACGGAGTTCATTCCCA-GTATAA
1 GCATACGGAGTTCATT-CCATGTATAA
15781376 G
1 G
15781377 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTATAA
Found at i:15782391 original size:159 final size:157
Alignment explanation
Indices: 15782089--15782592 Score: 523
Period size: 159 Copynumber: 3.2 Consensus size: 157
15782079 CCCAAGCTAA
* * * * *
15782089 GCATATGGAGTTCATTCCCA-GTCTAAGATCGGACCGGACCGAGGGTTCCGACAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCAGACCGAGGG-TCTGACAGTAGGATCGAC
* * * * * * * *
15782153 AGCACGTAAGGGGGGACCGAGTCGATCCTCGGCTTCCGCATTATGCCTCTCTGATCGGCTCAGTG
64 AGCACGCAAGGGGGGA-CGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTGAGCG
* * *
15782218 CCCAAACGCTCGTTTCGTGGGTTGACTTAG
128 CCCACACGCTCGTTTCATGGGTTGGCTTAG
* *
15782248 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCATACCAAGGGTCATGACAGTAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCAGACCGAGGGTC-TGACAGTAGGATCGAC
*
15782312 AGCACGCAAGGGGGGACAGGGTCGGTCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTGAGCG
64 AGCACGCAAGGGGGGAC-GGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTGAGCG
* *
15782377 CCCGCACGCCCGTTTCATGGGTTGGCTTAG
128 CCCACACGCTCGTTTCATGGGTTGGCTTAG
* * * ** * * * * *
15782407 GCGTAAGGAGTTCATTCCATGTCCAAGCCCA-AGCCAGACCGAGCGTTGTGGCAGTGGGA-CTGG
1 GCATACGGAGTTCATTCCATGTCTAAGATCAGA-CCAGACCGAG-GGTCTGACAGTAGGATC-GA
* * * * ** * *
15782470 CAGCACAC-AGAGGGGGATCGGGCCAATCCCCGGCTTGCGCATTCTATCTTTCCGGCCGGCTGAG
63 CAGCACGCAAG-GGGGGA-CGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTGAG
15782534 CGCCCACACGCTCGTTTCATGGGTTGGCTTAG
126 CGCCCACACGCTCGTTTCATGGGTTGGCTTAG
15782566 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
15782593 CATATGGAGT
Statistics
Matches: 290, Mismatches: 47, Indels: 16
0.82 0.13 0.05
Matches are distributed among these distances:
158 10 0.03
159 277 0.96
160 3 0.01
ACGTcount: A:0.20, C:0.29, G:0.30, T:0.21
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCAGACCGAGGGTCTGACAGTAGGATCGACAG
CACGCAAGGGGGGACGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTGAGCGCCC
ACACGCTCGTTTCATGGGTTGGCTTAG
Found at i:15782596 original size:26 final size:26
Alignment explanation
Indices: 15782566--15782618 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15782556 GTTGGCTTAG
15782566 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
15782592 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15782618 G
1 G
15782619 ACTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15783627 original size:159 final size:159
Alignment explanation
Indices: 15783326--15783988 Score: 638
Period size: 159 Copynumber: 4.2 Consensus size: 159
15783316 CCAAGCTAAC
** * * * *
15783326 CATACGGAGTTCATTCCCAGTCTAAG-ATCGGACCGGACCGAGGGTT-TCGACAGCAGGATCGAC
1 CATACGGAGTTCATTCCCAGTCTAAGCCCCAG-CCAGACCGAGGGTTGT-GACAGTAGGACCGAC
* * * * * * * *
15783389 AGCACGCAAAGGGGGATCGGGTCGATCCCCGGCTTGCACATTCTGCCTCTTCGGCCGGCTGAGTG
64 AGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTGAGCG
* * *
15783454 CTCGCACGCCCGTTTCGTGGGTTGGATTAGG
129 CCCGCACGCTCGTTTCATGGGTTGGATTAGG
* * * *
15783485 CATA-GAGAGTTCACT-CCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGTGGGACCGAC
1 CATACG-GAGTTCATTCCCA-GTCTAAGCCCCAGCCAGACCGAGGGTTGTGACAGTAGGACCGAC
* ** * * * *
15783548 AGCACGCAGAGGGGGACCGGGCCAATCATCGGCTTGCGCATTATGGCTCTCCGATCGGCTCAGTG
64 AGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTGAGCG
* *
15783613 CCCGAACGCTCGTTTCGTGGGTT-GACTTAGG
129 CCCGCACGCTCGTTTCATGGGTTGGA-TTAGG
** * * ** *
15783644 CATACGGAGTTCATTCCCAGTCTAAG-ATCAGACCATACCAAGGGTCATGACAGTAGGATCGACA
1 CATACGGAGTTCATTCCCAGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGACAGTAGGACCGACA
* * * *
15783708 GCACGCAAGGGGGGGACAGGGTCGGTCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTGAGCG
65 GCACGC-AGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTGAGCG
* *
15783773 CCCGCACGCTTGTTTCATGGGTTGGCTTAGG
129 CCCGCACGCTCGTTTCATGGGTTGGATTAGG
* * * * ** * * * *
15783804 CGTAGGGAGTTCATT-CCATGTCCAAGCCCAAGCCAGACCGAGCATTGTGGCAGTGGGACTGGCA
1 CATACGGAGTTCATTCCCA-GTCTAAGCCCCAGCCAGACCGAGGGTTGTGACAGTAGGACCGACA
* * * ** * **
15783868 GCACACATAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTATCTTTCCGGTCGGCTGAGCGC
65 GCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTGAGCGC
* *
15783933 CCGCACACTCGTTTCATGGGTTGGCTTAGG
130 CCGCACGCTCGTTTCATGGGTTGGATTAGG
15783963 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
15783989 AGTTTGAGCC
Statistics
Matches: 407, Mismatches: 84, Indels: 26
0.79 0.16 0.05
Matches are distributed among these distances:
158 9 0.02
159 268 0.66
160 127 0.31
161 3 0.01
ACGTcount: A:0.19, C:0.29, G:0.31, T:0.21
Consensus pattern (159 bp):
CATACGGAGTTCATTCCCAGTCTAAGCCCCAGCCAGACCGAGGGTTGTGACAGTAGGACCGACAG
CACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTGAGCGCC
CGCACGCTCGTTTCATGGGTTGGATTAGG
Found at i:15783904 original size:319 final size:318
Alignment explanation
Indices: 15783326--15783989 Score: 891
Period size: 319 Copynumber: 2.1 Consensus size: 318
15783316 CCAAGCTAAC
* * * *
15783326 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTTCGACAGCAGGATCGACAG
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTATCGACAGCAGGATCGACAG
* * * * *
15783391 CACGCAAAGGGGGATCGGGTCGATCCCCGGCTTGCACATTCTGCCTCTTCGGCCGGCTGAGTGCT
66 CACGCAAAGGGGGATCGGGTCGATCCCCGGCTTGCACATTATGCCTCTCCGACCGGCTGAGCGCC
* * * *
15783456 CGCACGCCCGTTTCGTGGGTTGGATTAGGCATAGAGAGTTCACTCCATGTCTAAGCCCCAGCCGG
131 CGCACGCCCGTTTCATGGGTTGGATTAGGCATAGAGAGTTCACTCCATGTCCAAGCCCAAGCCAG
** * *
15783521 ACCGAGGGTTGTGGCAGTGGGACCGACAGCACGCAGAGGGGGACCGGGCCAATCATCGGCTTGCG
196 ACCGAGCATTGTGGCAGTGGGACCGACAGCACACAGAGGGGGACCGGGCCAATCACCGGCTTGCG
* * * *
15783586 CATTATGGCTCTCCGATCGGCTCAGTGCCCGAACGCTCGTTTCGTGGGTTGACTTAGG
261 CATTATAGCTCTCCGATCGGCTCAGCGCCCGAACACTCGTTTCATGGGTTGACTTAGG
* *
15783644 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCATACCAAGGGTCAT-GACAGTAGGATCGACA
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGT-ATCGACAGCAGGATCGACA
* * *
15783708 GCACGCAAGGGGGGGA-CAGGGTCGGTCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTGAGC
65 GCACGCAA-AGGGGGATC-GGGTCGATCCCCGGCTTGCACATTATGCCTCTCCGACCGGCTGAGC
** * * * *
15783772 GCCCGCACGCTTGTTTCATGGGTTGGCTTAGGCGTAGGGAGTTCATTCCATGTCCAAGCCCAAGC
128 GCCCGCACGCCCGTTTCATGGGTTGGATTAGGCATAGAGAGTTCACTCCATGTCCAAGCCCAAGC
* * * * *
15783837 CAGACCGAGCATTGTGGCAGTGGGACTGGCAGCACACATAGGGGGACCGGGCCGATCCCCGGCTT
193 CAGACCGAGCATTGTGGCAGTGGGACCGACAGCACACAGAGGGGGACCGGGCCAATCACCGGCTT
* * * * * * *
15783902 GCGCATTCTATCTTTCCGGTCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAGG
258 GCGCATTATAGCTCTCCGATCGGCTCAGCGCCCGAACACTCGTTTCATGGGTTGACTTAGG
15783963 CATACGGAGTTCATTCCCAGTCTAAGA
1 CATACGGAGTTCATTCCCAGTCTAAGA
15783990 GTTTGAGCCA
Statistics
Matches: 299, Mismatches: 44, Indels: 5
0.86 0.13 0.01
Matches are distributed among these distances:
318 65 0.22
319 234 0.78
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.21
Consensus pattern (318 bp):
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTATCGACAGCAGGATCGACAG
CACGCAAAGGGGGATCGGGTCGATCCCCGGCTTGCACATTATGCCTCTCCGACCGGCTGAGCGCC
CGCACGCCCGTTTCATGGGTTGGATTAGGCATAGAGAGTTCACTCCATGTCCAAGCCCAAGCCAG
ACCGAGCATTGTGGCAGTGGGACCGACAGCACACAGAGGGGGACCGGGCCAATCACCGGCTTGCG
CATTATAGCTCTCCGATCGGCTCAGCGCCCGAACACTCGTTTCATGGGTTGACTTAGG
Found at i:15784999 original size:159 final size:158
Alignment explanation
Indices: 15784704--15785361 Score: 610
Period size: 159 Copynumber: 4.1 Consensus size: 158
15784694 TAACCATACG
* * * *
15784704 GAGTTCATTCCCA-GTCTAAGATCGGACCGGACCGAGGGTT-TCGACAGCAGGATCGACAGCACG
1 GAGTTCATT-CCATGTCTAAGACCAG-CCGGACCGAGGGTTGT-GGCAGCAGGACCGACAGCACG
* * * * * * * *
15784767 CAAAGGGGGATCGGGTCGATCCCCGGCTTGCACATTCTGCCTCTTCGGCCGGCTGAGTGCTCGCA
63 CAGAGGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTTCGACCGGCTCAGTGCCCGCA
*
15784832 CGCCCGTTTCGTGGGTTGGATTAGGCATAGA
128 CGCCCATTTCGTGGGTTGGATTAGGCATAGA
* * **
15784863 GAGTTCACTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGTGGGACCGACAGCACGCA
1 GAGTTCATTCCATGTCTAAG-ACCAGCCGGACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCA
** * * * * *
15784928 GAGGGGGACCGGGCCAATCATCGGCTTGCGCATTATGGCTCTCCGATCGGCTCAGTGCCCGAACG
65 GAGGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTTCGACCGGCTCAGTGCCCGCACG
* *
15784993 CTCGTTTCGTGGGTT-GACTTAGGCATACG-
130 CCCATTTCGTGGGTTGGA-TTAGGCATA-GA
* * *** * * *
15785022 GAGTTCATTCCCA-GTCTAAGATCGGACCGGACCGAGGGTTACAGTAGTAGGATCGACAGCACGC
1 GAGTTCATT-CCATGTCTAAGACCAG-CCGGACCGAGGGTTGTGGCAGCAGGACCGACAGCACGC
* * * * *
15785086 AG-GGGGGACCGGGCCAGTCCCTGGGTTGCGCATTCTGCCTCTTCGACCGACTGAGTGCCCGCAC
64 AGAGGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTTCGACCGGCTCAGTGCCCGCAC
* * *
15785150 GCCCATTTCATGGGTTGGCTTAGGCATAGG
129 GCCCATTTCGTGGGTTGGATTAGGCATAGA
* * * * * * *
15785180 GAGTTCATTCCATGTCTAAGGCAAGCCAGATCAAGGGTTGTGGCAGCGGGACCGACAGCACACAG
1 GAGTTCATTCCATGTCTAAGACCAGCCGGACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCAG
* ** * * * **
15785245 AGGGGGATCGGGCTGATCCCCGGCTTGCGTATTCTACCTCTTC-AGTCGGCTGAGCACCCGCCCG
66 AGGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTTCGA-CCGGCT---CA-GTGCCCG
* * *
15785309 CACGCTCATTTCGTGGGTTGGCTTAGGCATACA
126 CACGCCCATTTCGTGGGTTGGATTAGGCATAGA
15785342 GAGTTCATTCCATGTCTAAG
1 GAGTTCATTCCATGTCTAAG
15785362 CATACGAAGT
Statistics
Matches: 401, Mismatches: 82, Indels: 29
0.78 0.16 0.06
Matches are distributed among these distances:
157 34 0.08
158 134 0.33
159 171 0.43
160 7 0.02
161 1 0.00
162 54 0.13
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.21
Consensus pattern (158 bp):
GAGTTCATTCCATGTCTAAGACCAGCCGGACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCAG
AGGGGGACCGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTTCGACCGGCTCAGTGCCCGCACGC
CCATTTCGTGGGTTGGATTAGGCATAGA
Found at i:15786112 original size:26 final size:26
Alignment explanation
Indices: 15786061--15786113 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15786051 GTTGACTTAG
* *
15786061 GCATACGGGGTTCATCCCTAATCTAA
1 GCATACGGAGTTCATCCCTAACCTAA
* *
15786087 GCATACGGAGTTCATTCCTAGCCTAA
1 GCATACGGAGTTCATCCCTAACCTAA
15786113 G
1 G
15786114 ATCGAACTAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAACCTAA
Found at i:15786612 original size:26 final size:26
Alignment explanation
Indices: 15786562--15786614 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15786552 GTTGGCATAG
* *
15786562 GCATACTGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
15786588 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
15786614 G
1 G
15786615 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:15786794 original size:26 final size:26
Alignment explanation
Indices: 15786758--15786810 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15786748 GATGGCTTAG
*
15786758 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
15786784 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15786810 G
1 G
15786811 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15786802 original size:196 final size:196
Alignment explanation
Indices: 15786527--15786981 Score: 556
Period size: 196 Copynumber: 2.3 Consensus size: 196
15786517 CCGATCGGTT
** * * *
15786527 GAGCGCCCGCACGCTAATTTTATGGGTTGGCATAGGCATACTGAGTTCATTCCATGTCTAAGCAT
1 GAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAT
* *** *
15786592 ACGGAGTTCATTCCCAATCTAAGATCAGA-CTGGGCCGAGCGTTGCGGTAGCAGGACCAACAGCA
66 ACAGAGTTCATTCCCAATCTAAGATCAGATC-GGGCCGAGCGTTGCAACAACAGGACCAACAGCA
* ** * * *
15786656 GGATCGGTAGCACGCAAGGGGGGATC-GAGCCGATTC-TGGCTTATGCATTCTGCCTCTTCGACT
130 GGATCGGCAGCACGC-AGGGGGGATCAG-GCCGATTCACAGCTTACGCATTCTACCTCTTCGACC
15786719 GACA
193 GACA
* *
15786723 GAGCGCCCGCACGCTCGTTTCGTGGGATGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAT
1 GAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAT
* * * * *
15786788 ACAGAGTTCATTCCCAGTCTAAGATCAGATCGGGTCGAGGGTTGCAACAACAGGACCAGCAGTAG
66 ACAGAGTTCATTCCCAATCTAAGATCAGATCGGGCCGAGCGTTGCAACAACAGGACCAACAGCAG
* * * *
15786853 GATCGGCAGCACGCAGGGGGGATCAGGCTGATTCACAGCTTGCGTATTCTACCTCTTCGACCGGC
131 GATCGGCAGCACGCAGGGGGGATCAGGCCGATTCACAGCTTACGCATTCTACCTCTTCGACCGAC
*
15786918 T
196 A
* * * * * *
15786919 GAGCACCTGTACGCTCGTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTTCATGTCAAAGC
1 GAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
15786982 CCCAGTCAGA
Statistics
Matches: 220, Mismatches: 36, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
195 17 0.08
196 202 0.92
197 1 0.00
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (196 bp):
GAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCAT
ACAGAGTTCATTCCCAATCTAAGATCAGATCGGGCCGAGCGTTGCAACAACAGGACCAACAGCAG
GATCGGCAGCACGCAGGGGGGATCAGGCCGATTCACAGCTTACGCATTCTACCTCTTCGACCGAC
A
Found at i:15787648 original size:26 final size:26
Alignment explanation
Indices: 15787612--15787664 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15787602 GTTGGCTTAG
15787612 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15787638 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15787664 G
1 G
15787665 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15787837 original size:26 final size:26
Alignment explanation
Indices: 15787808--15787860 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15787798 GTTGGCTTAG
* *
15787808 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
15787834 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15787860 G
1 G
15787861 ATCGAATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15787840 original size:196 final size:196
Alignment explanation
Indices: 15787575--15788030 Score: 693
Period size: 196 Copynumber: 2.3 Consensus size: 196
15787565 TTCCGGTAGC
* * *
15787575 TTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCTAAG
1 TTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAG
* * * * * *
15787639 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGGCTGAGGGTTGCGGTAGTAGGACCAGTAG
65 CATACGAAGTTCATTCCCAGTCTAAGATCGAACCGGGCAGAGGGTTGCGGCAGCAGGACCAGCAG
* * *
15787704 CAGGATCGGCAGCACGCAGGGGGGATCAGGCCGAT-CCTCGACTTACGCATTATGCCTCTCCGGC
130 CAGGATCGACAGCACGCAGAGGGGATCAGGCCGATCCCT-GACTTACGCATTATGCCTCTCCGAC
15787768 CGG
194 CGG
*
15787771 TTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGC
1 TTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
*
15787836 ATACGAAGTTCATTCCCAGTCTAAGATCGAATCGGGCAGAGGGTTGCGGCAGCAGGACCAGCAGC
66 ATACGAAGTTCATTCCCAGTCTAAGATCGAACCGGGCAGAGGGTTGCGGCAGCAGGACCAGCAGC
* * * * *
15787901 AGGATCGACAGCACGTAGAGGGGATCGGGCCGATCCCTTACTTGCGCATTCTGCCTCTCCGACCG
131 AGGATCGACAGCACGCAGAGGGGATCAGGCCGATCCCTGACTTACGCATTATGCCTCTCCGACCG
15787966 G
196 G
*
15787967 CTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC-AAGC
1 TTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
15788031 CCCAGTCAGA
Statistics
Matches: 237, Mismatches: 21, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
195 7 0.03
196 227 0.96
197 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (196 bp):
TTGAGCGCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
ATACGAAGTTCATTCCCAGTCTAAGATCGAACCGGGCAGAGGGTTGCGGCAGCAGGACCAGCAGC
AGGATCGACAGCACGCAGAGGGGATCAGGCCGATCCCTGACTTACGCATTATGCCTCTCCGACCG
G
Found at i:15788128 original size:170 final size:169
Alignment explanation
Indices: 15787874--15788188 Score: 461
Period size: 170 Copynumber: 1.9 Consensus size: 169
15787864 GAATCGGGCA
* *
15787874 GAGGGTTGCGGCAGCAGGACCAGCAGCAGGATCGACAGCACGTAGAGGGGATCGGGCCGATCCCT
1 GAGGGTTGCGGCAGCAGGACCAGCAGCAGGATCGACAACACGTAGAGGGGATCGGGCCAATCCCT
* * * *
15787939 TACTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGTACGCTCGTTTCATGGGTTG-GCTTA
66 GACTTACGCATTATGCCTCTCCGACCGGCTGAGCACCCGTACGCTCGTTTCATGGGTTGAG-TTA
15788003 GGCATACGGAGTTCATTCCATGTCAAGCCCCAGTCAGATC
130 GGCATACGGAGTTCATTCCATGTCAAGCCCCAGTCAGATC
* * ** * *
15788043 GAGGGTTGTGGCAGTAGGACCAGCAGTGGGATCGGCAACACGTAGAGAGGGATCGGGCTAATCCC
1 GAGGGTTGCGGCAGCAGGACCAGCAGCAGGATCGACAACACGTAGAG-GGGATCGGGCCAATCCC
** * *
15788108 TGACTTACGCATTATGCCTCTCCGGTCGGTTGAGCACCCGTACGCTCGTTTCGTGGGTTGAGTTA
65 TGACTTACGCATTATGCCTCTCCGACCGGCTGAGCACCCGTACGCTCGTTTCATGGGTTGAGTTA
15788173 GGCATACGGAGTTCAT
130 GGCATACGGAGTTCAT
15788189 CCCCAGTCTA
Statistics
Matches: 128, Mismatches: 16, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
169 41 0.32
170 86 0.67
171 1 0.01
ACGTcount: A:0.19, C:0.26, G:0.32, T:0.22
Consensus pattern (169 bp):
GAGGGTTGCGGCAGCAGGACCAGCAGCAGGATCGACAACACGTAGAGGGGATCGGGCCAATCCCT
GACTTACGCATTATGCCTCTCCGACCGGCTGAGCACCCGTACGCTCGTTTCATGGGTTGAGTTAG
GCATACGGAGTTCATTCCATGTCAAGCCCCAGTCAGATC
Found at i:15788203 original size:26 final size:26
Alignment explanation
Indices: 15788174--15788226 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15788164 GTTGAGTTAG
*
15788174 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
15788200 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
15788226 G
1 G
15788227 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:15788689 original size:158 final size:157
Alignment explanation
Indices: 15788200--15788691 Score: 427
Period size: 158 Copynumber: 3.1 Consensus size: 157
15788190 CCCAGTCTAA
* ** * * * *
15788200 GCATACAGAGTTCATTCCTAGTCTAAGATCAGATCGGACTGAGGATTGCGACAGCAAGATCGGCA
1 GCATACGGAGTTCATTCCTAGTCTAAGAT-AGATAAGACTGAGGGTTGTGGCAGCAGGATCGGCA
* * * * * *
15788265 GCACGCAGG-GGGGACTAGGCCGATCCCTGGCTTGTGCATTCTACCTCTCCGATCGACTGATCGC
65 GCACGCAGGAGGGGACGA-GCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGACTGAACGC
* * *
15788329 CCGTATGCTCATTTCGTGGGTTGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * **** * ** * * *
15788358 G-AAAGGGAGTTCATTCC-ATGTCTAAGCCCCA-ACCGACCCAAGAGTTGTGGCAGCGGGACCGG
1 GCATACGGAGTTCATTCCTA-GTCTAAGATAGATA-AGA-CTGAGGGTTGTGGCAGCAGGATCGG
* * * * * * * ** *
15788420 CAGCACACA-GAGTGGGATTGGGCCGATCCCCGGCTTGCGCATTATGCATTTTCGACCGGTTCAA
63 CAGCACGCAGGAG-GGGA-CGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGACTGAA
* * * * * *
15788484 CGCCAGCACGCTTGTTTCATGGTTTGACTTAT
126 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
15788516 GCATACGAAGTTCATTCCTAGTCTAAGATGGATAAGACTGAGGGTTGTGGCAGTAGGATCGACAG
1 GCATACGGAGTTCATTCCTAGTCTAAGATAGATAAGACTGAGGGTTGTGGCAGCAGGATCGGCAG
*
15788581 CACGCAGGAGGGGACCGAGCCGATCCCCGGCTTGCGTATTCTGCCTCTTCGATCGACTGAACGCC
66 CACGCAGGAGGGGA-CGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGACTGAACGCC
15788646 CGCACGCTCGTTTCGTGGGTTGGCTTAG
130 CGCACGCTCGTTTCGTGGGTTGGCTTAG
*
15788674 GCATATGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
15788692 ACATCCAAGC
Statistics
Matches: 246, Mismatches: 78, Indels: 20
0.72 0.23 0.06
Matches are distributed among these distances:
156 5 0.02
157 45 0.18
158 168 0.68
159 26 0.11
160 2 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATAGATAAGACTGAGGGTTGTGGCAGCAGGATCGGCAG
CACGCAGGAGGGGACGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTTCGATCGACTGAACGCCC
GCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:15790633 original size:24 final size:24
Alignment explanation
Indices: 15790606--15790664 Score: 100
Period size: 24 Copynumber: 2.5 Consensus size: 24
15790596 GAACTCGTGC
*
15790606 TCCACTAACCAACGTAGCTCATGG
1 TCCACTAACCAACGCAGCTCATGG
*
15790630 TCCACTGACCAACGCAGCTCATGG
1 TCCACTAACCAACGCAGCTCATGG
15790654 TCCACTAACCA
1 TCCACTAACCA
15790665 TCCCACTTGT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.29, C:0.37, G:0.15, T:0.19
Consensus pattern (24 bp):
TCCACTAACCAACGCAGCTCATGG
Found at i:15790751 original size:20 final size:22
Alignment explanation
Indices: 15790711--15790751 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 22
15790701 TCTTTTGTGT
15790711 AATAGCTTCATGCTTGAACCCA
1 AATAGCTTCATGCTTGAACCCA
*
15790733 AATA-CTTCA-GCTTGCACCC
1 AATAGCTTCATGCTTGAACCC
15790752 CCGCTGGGGC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
21 5 0.28
22 4 0.22
ACGTcount: A:0.29, C:0.32, G:0.12, T:0.27
Consensus pattern (22 bp):
AATAGCTTCATGCTTGAACCCA
Found at i:15793272 original size:26 final size:26
Alignment explanation
Indices: 15793236--15793288 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15793226 GTTAACTTAG
15793236 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* **
15793262 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
15793288 G
1 G
15793289 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:15793631 original size:26 final size:26
Alignment explanation
Indices: 15793579--15793631 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15793569 GTTGGCTTAG
* *
15793579 GCATACGGAGTTCATTCCATGTTTAA
1 GCATACAGAGTTCATTCCATGTCTAA
15793605 GCATACAGAGTTCATTCCCA-GTCTAA
1 GCATACAGAGTTCATT-CCATGTCTAA
15793631 G
1 G
15793632 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:15794337 original size:26 final size:26
Alignment explanation
Indices: 15794300--15794352 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15794290 GTTGACTTAG
*
15794300 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
15794326 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
15794352 G
1 G
15794353 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:15794527 original size:26 final size:26
Alignment explanation
Indices: 15794498--15794550 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15794488 GTTGACTTAG
15794498 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
15794524 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15794550 G
1 G
15794551 ATTAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15794624 original size:63 final size:63
Alignment explanation
Indices: 15794546--15794668 Score: 228
Period size: 63 Copynumber: 2.0 Consensus size: 63
15794536 CATTCCCAGT
* *
15794546 CTAAGATTAGACCGGATCGAGGGTTACGGTAGTAGGATCAACAGCATACAGGGGGGATCGGGC
1 CTAAGATTAGACCGGACCAAGGGTTACGGTAGTAGGATCAACAGCATACAGGGGGGATCGGGC
15794609 CTAAGATTAGACCGGACCAAGGGTTACGGTAGTAGGATCAACAGCATACAGGGGGGATCG
1 CTAAGATTAGACCGGACCAAGGGTTACGGTAGTAGGATCAACAGCATACAGGGGGGATCG
15794669 AGCCGATCCC
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
63 58 1.00
ACGTcount: A:0.30, C:0.18, G:0.35, T:0.17
Consensus pattern (63 bp):
CTAAGATTAGACCGGACCAAGGGTTACGGTAGTAGGATCAACAGCATACAGGGGGGATCGGGC
Found at i:15795523 original size:26 final size:26
Alignment explanation
Indices: 15795487--15795539 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15795477 GTTGGCTTAG
15795487 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
15795513 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15795539 G
1 G
15795540 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15795720 original size:26 final size:26
Alignment explanation
Indices: 15795683--15795735 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15795673 GTTGACTTAG
15795683 GCATACAGAGTTCATCCCTAATCTAA
1 GCATACAGAGTTCATCCCTAATCTAA
* *
15795709 GCATAC-GAAGTTCATTCCTAGTCTAA
1 GCATACAG-AGTTCATCCCTAATCTAA
15795735 G
1 G
15795736 ATCAAATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAATCTAA
Found at i:15796556 original size:26 final size:26
Alignment explanation
Indices: 15796520--15796572 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15796510 GTTGGCTTAG
15796520 GCATACAGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
*
15796546 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
15796572 G
1 G
15796573 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:15797613 original size:26 final size:26
Alignment explanation
Indices: 15797583--15797634 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15797573 GTTGGCTTAG
15797583 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15797609 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15797635 TAGTTTGAGC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15798357 original size:26 final size:26
Alignment explanation
Indices: 15798307--15798359 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15798297 GTTGACGTAG
* *
15798307 GCATACGGAGTTCATCCTCAGTCTAA
1 GCATACAGAGTTCATCCTCAATCTAA
15798333 GCATACAGAGTTCATTCC-CAATCTAA
1 GCATACAGAGTTCA-TCCTCAATCTAA
15798359 G
1 G
15798360 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCTCAATCTAA
Found at i:15798570 original size:21 final size:21
Alignment explanation
Indices: 15798546--15798595 Score: 91
Period size: 21 Copynumber: 2.4 Consensus size: 21
15798536 TTGTGGTAGC
*
15798546 GGGACCGACAGCATGGAGAGG
1 GGGACCGACAGCACGGAGAGG
15798567 GGGACCGACAGCACGGAGAGG
1 GGGACCGACAGCACGGAGAGG
15798588 GGGACCGA
1 GGGACCGA
15798596 GCAGATCCCC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.28, C:0.22, G:0.48, T:0.02
Consensus pattern (21 bp):
GGGACCGACAGCACGGAGAGG
Found at i:15798630 original size:180 final size:179
Alignment explanation
Indices: 15798405--15798749 Score: 494
Period size: 180 Copynumber: 1.9 Consensus size: 179
15798395 ATGGCATGCA
* * * *
15798405 AGGGGGACCGGGCCAATCCCCGACTTGTGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGTAAGC
1 AGGGGGACCGAGCCAATCCCCGACTTGTGCATTCTACCTCTCCGGTCGGCTGAGCCCCCGCAAGC
* * *
15798470 CCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTTATTCCATGTCTAAGCCCCAGTCAGACCGAAG
66 CCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAAG
* *
15798535 GTTGTGGTAGCGGGACCGACAGCATGGAGAGGGGGACCGACAGCACGGAG
131 GTTGTGGCAGC-GGACCGACAGCACGGAGAGGGGGACCGACAGCACGGAG
* *
15798585 AGGGGGACCGAG-CAGATCCCCGGCTTGTGCATTCTACCTCTCCGGTCGGCTGAGCCCCCGCACG
1 AGGGGGACCGAGCCA-ATCCCCGACTTGTGCATTCTACCTCTCCGGTCGGCTGAGCCCCCGCAAG
*** * * *
15798649 TTTGTTTCATGGGTTTGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAG
65 CCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAA
* *
15798714 GGTTGTGGCAGCGGACCGGCAGCACGTAGAGGGGGA
130 GGTTGTGGCAGCGGACCGACAGCACGGAGAGGGGGA
15798750 TCGAGTCGAT
Statistics
Matches: 145, Mismatches: 19, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
179 23 0.16
180 122 0.84
ACGTcount: A:0.18, C:0.27, G:0.34, T:0.20
Consensus pattern (179 bp):
AGGGGGACCGAGCCAATCCCCGACTTGTGCATTCTACCTCTCCGGTCGGCTGAGCCCCCGCAAGC
CCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAAG
GTTGTGGCAGCGGACCGACAGCACGGAGAGGGGGACCGACAGCACGGAG
Found at i:15798869 original size:158 final size:158
Alignment explanation
Indices: 15798568--15798883 Score: 345
Period size: 158 Copynumber: 2.0 Consensus size: 158
15798558 ATGGAGAGGG
* * *
15798568 GGACCGACAGCACGGAGAGGGGGACCGAGCAGATCCCCGGCTTGTGCATTCTACCTCTCCGGTCG
1 GGACCGACAGCACGGAGAGGGGGACCGAGCAGATCCCCGACTTGCGCATTATACCTCTCCGGTCG
* * * * * ** *
15798633 GCTGAGCCCCCGCACGTTTGTTTCATGGGTTTGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
66 GCTCAACCCCCGAACGCTAGTTTCATGGGTTTGCTTAGGCATACAGAGTTCATTCCATATCTAAG
* *
15798698 CCCCAGCCGGACCGAGGGTTGTGGCAGC
131 CCCCAGCCAGACCGAGGGTTATGGCAGC
* * * *
15798726 GGACCGGCAGCACGTAGAGGGGGATCGAGTC-GATCCCCGACTTGCGCATTATGCCTCTCCGGTC
1 GGACCGACAGCACGGAGAGGGGGACCGAG-CAGATCCCCGACTTGCGCATTATACCTCTCCGGTC
* *
15798790 TGCTCAACGCCCGAACGCTAGTTTCATGGG-TTGACTTTA-GCATACAGAGTTCATTCCCA-ATC
65 GGCTCAACCCCCGAACGCTAGTTTCATGGGTTTG-C-TTAGGCATACAGAGTTCATT-CCATATC
** * *
15798852 TAAG-ATCGGATCAGACCGAGGGTTATGGCAGC
127 TAAGCCCCAG-CCAGACCGAGGGTTATGGCAGC
15798884 AGGATCGATG
Statistics
Matches: 130, Mismatches: 23, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
157 5 0.04
158 118 0.91
159 7 0.05
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (158 bp):
GGACCGACAGCACGGAGAGGGGGACCGAGCAGATCCCCGACTTGCGCATTATACCTCTCCGGTCG
GCTCAACCCCCGAACGCTAGTTTCATGGGTTTGCTTAGGCATACAGAGTTCATTCCATATCTAAG
CCCCAGCCAGACCGAGGGTTATGGCAGC
Found at i:15799017 original size:26 final size:26
Alignment explanation
Indices: 15798988--15799040 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15798978 GTTGGCTTTG
*
15798988 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
15799014 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15799040 G
1 G
15799041 ATCAAACTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15799506 original size:26 final size:26
Alignment explanation
Indices: 15799470--15799522 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15799460 GTTGGCTTAG
15799470 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15799496 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15799522 G
1 G
15799523 ATTGAATCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15799901 original size:158 final size:157
Alignment explanation
Indices: 15799558--15800647 Score: 664
Period size: 158 Copynumber: 6.9 Consensus size: 157
15799548 AGTAGCACCA
* * * * * **
15799558 GCAGCAGGATCGATAGCACACAGGGGGGGACAGGGCTGATCCCAGGCTTATGCATTCTGCCTCT-
1 GCAGCAGGATCGACAGCACGCA-GGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTC
* ** * **** **
15799622 CGATCGGCTGAGTGCCCGTACG-TCCACATCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCAT
65 CGACCGGCTGAACGCCCGCACGCT-TGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCAT
** * * * * * *
15799686 GTCTAACCCCAG-TCAAACCGAAGGTTGTG
129 GTCTAAGACCGGACCGAA-TGAGGGTTATG
* * * * * * *
15799715 GTAGCGGGA-CTGATAGCACACAGAGGGGGACCGGGCTGATCCCTGGCATGCGCATTATGCCTCT
1 GCAGCAGGATC-GACAGCACGCAG-GGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCT
* * * * * *
15799779 CTGGCCGGTTCAACGCCCGAACGCTTGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCA
64 CCGACCGGCTGAACGCCCGCACGCTTGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATT-CCA
**
15799844 -GTCTAAGATTGGACCGAACTGAGGGTTATG
128 TGTCTAAGACCGGACCGAA-TGAGGGTTATG
* ** * *
15799874 GCAGCAGGATCGACAGCATGCAGGGGGGACCAAGCCGATCCCTGGCTTGTGCATTCTGCCTCTCT
1 GCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCC
** * * *
15799939 GACCAACTGAGCGCCCGCATGCTTGTTTCATGGGTTGGCTTTGGCATACAGAGTTCATTCCATGT
66 GACCGGCTGAACGCCCGCACGCTTGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGT
* * ** * * *
15800004 CTAAGCATACAGA--GGGTTACGG-TAGCAG
131 CTAAG-A-CCGGACCGAATGAGGGTTA--TG
* * **
15800032 GACCAGCGGTAGGATCGACAGTACGCATGGGGGAGGGGGCCGATCTCC-GGCTTGCGCATTCTGC
1 G--CAGC---AGGATCGACAGCACGCAGGGGGGACCGGGCCGATC-CCTGGCTTGCGCATTCTGC
* * *** * ** *
15800096 CTCTCCGATCGGCT-AAGCACCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTTAT
60 CTCTCCGACCGGCTGAA-CGCCCGCACGCTTGTTTCATGGGTTGGCTTAGGCATACAGAGTTCAT
* * * * * *
15800160 TCCATGTCTAAGCCCCAGTCGGAACGAGGGTTGTG
124 TCCATGTCTAAG-ACCGGACCGAATGAGGGTTATG
* * * * * * * *
15800195 GCAGCGGGACCGACAGCATGTAGAGGGTGACTGGGCCGATCCCCGGCTT-CGCATTCTACCTCTC
1 GCAGCAGGATCGACAGCACGCAG-GGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTC
* * * * * ** *
15800259 CAACCGGCTGAGCCCCCGCAC-ATCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCACTCCAT
65 CGACCGGCTGAACGCCCGCACGCT-TGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCAT
** *
15800323 GTCTAAG-CCCCAGCCGAATCGAGGGTTGTG
129 GTCTAAGACCGGA-CCGAAT-GAGGGTTATG
* * * ** * * *
15800353 GCAGCCGGA-CTGGCAGCACGCAGAGGGGGATCGGGGTGATCCCCGACTTGCGCATTATGCCTCT
1 GCAGCAGGATC-GACAGCACGCAG-GGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCT
* * * * * * * *
15800417 CCGATCGGCTCAATGCTCGAATGCTAGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCA
64 CCGACCGGCTGAACGCCCGCACGCTTGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATT-CCA
* * *
15800482 -ATCTAAGATCGGACCGGATCGAGGGTTATG
128 TGTCTAAGACCGGACCGAAT-GAGGGTTATG
* * * ** * *
15800512 GCAGTC-GGATCGACAGCACGCAATGCGGGACTGGGTTGGTCCCTGGCTTGCTCATTCTGCCTCT
1 GCAG-CAGGATCGACAGCACGC-AGGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCT
* * * * * *
15800576 CCGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
64 CCGACCGGCTGAACGCCCGCACGCTTGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCAT
15800641 GTCTAAG
129 GTCTAAG
15800648 CATACGGAGT
Statistics
Matches: 717, Mismatches: 179, Indels: 72
0.74 0.18 0.07
Matches are distributed among these distances:
156 6 0.01
157 64 0.09
158 281 0.39
159 230 0.32
160 16 0.02
161 4 0.01
162 4 0.01
163 105 0.15
164 6 0.01
165 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (157 bp):
GCAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCC
GACCGGCTGAACGCCCGCACGCTTGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGT
CTAAGACCGGACCGAATGAGGGTTATG
Found at i:15800657 original size:26 final size:26
Alignment explanation
Indices: 15800621--15800673 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15800611 GTTGGCTTAG
15800621 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15800647 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15800673 G
1 G
15800674 ATTGGACCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15801139 original size:26 final size:26
Alignment explanation
Indices: 15801099--15801154 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
15801089 TGGGTTGGCT
15801099 TAAGCATACGAAGTTCATTC-CATGTC
1 TAAGCATACGAAGTTCATTCGCA-GTC
* * *
15801125 TAAGTATACGGAGTTTATTCGCAGTC
1 TAAGCATACGAAGTTCATTCGCAGTC
15801151 TAAG
1 TAAG
15801155 ATTGAATCGA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATTCGCAGTC
Found at i:15801497 original size:479 final size:481
Alignment explanation
Indices: 15800564--15801501 Score: 1209
Period size: 479 Copynumber: 2.0 Consensus size: 481
15800554 CTGGCTTGCT
* * * * *
15800564 CATTCTGCCTCTCCGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
1 CATTCTGCCTCTCCGACAGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAAGCATACGA
* *
15800629 AGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGAACCGAGGGTT
66 AGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGAACCGAACAGAGGGTT
* * * * ** * * *
15800694 GCCGTAGCAGGACCAGCAGCAGGATCGGCAGCACGCAAGGGGGACAGGGTCGATCCCTGACTTGC
131 ACAGCAGCAGCACCAGCAGCAGGATCAACAGCACACAAGGGGGACAGGGTCGATCCCAGACTTAC
* * * * *
15800759 GTATTTTACCTCTCCAACCGGCTGAGTGCCCGCACGCCCATTCCGTGGGTTGGCTTTGGCATAGG
196 GCATTCTACCTCTCCAACCGGCTGAGCGCCCGCACGCCCATTCCATGGGTTGGCTTAGGCATAGG
* * *
15800824 GAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGCAGGACGGGCAGCACACA
261 GAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAGGACCGACAGCACACA
* * * ** *
15800889 GAGGGGAATCGGACCGATCCCCGACTTACGCATTATCCCTCTTCGGTCGGCTCAGTGCCCGAACG
326 GAGGGGAACCGGACCGATCCCCGACATACGCATTATCCCTCTCCGACCGGCTCAGCGCCCGAACG
* * * * **
15800954 TTTATTTCATGGGTTGACTTAGGCATATAGAGTTCATTCCCAGTCTAAGATCGGATTGGATCGAG
391 CTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAG
15801019 GGTTGCGGTAATAGGTTGATAAAGCG
456 GGTTGCGGTAATAGGTTGATAAAGCG
* **
15801045 CATTTTGCCTCTCCGACAGGCTGAGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAAGCATACGA
1 CATTCTGCCTCTCCGACAGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAAGCATACGA
* * * * * *
15801110 AGTTCATTCCATGTCTAAGTATACGGAGTTTATTCGCAGTCTAAGATTGAATCGAATAGAGGTTT
66 AGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGAACCGAACAGAGGGTT
* * * * *
15801175 ACAGCAGTAGCACCAGGAGCAGGATCAATAGCACACAA-GGGGACAGGG-CTGATTCCAGGCTTA
131 ACAGCAGCAGCACCAGCAGCAGGATCAACAGCACACAAGGGGGACAGGGTC-GATCCCAGACTTA
* ** * * *
15801238 CGCATTCTGCCTCTCCAATTGGCTGAGCGCCCGCACGTCCGTTTCATGGGTTGGCTTAGGCATAG
195 CGCATTCTACCTCTCCAACCGGCTGAGCGCCCGCACGCCCATTCCATGGGTTGGCTTAGGCATAG
** *
15801303 GGAGTTCATTCCATGTCTAA-CCCCAG-CTGGACCGAGGGTTGTGGCAGTGGGACCGACAGCACG
260 GGAGTTCATTCCATGTCTAAGCCCCAGTC-GGACCGAGGGTTGTGGCAGCAGGACCGACAGCACA
* * * * * *
15801366 CAGAGGGGGACCGGGCTGATCCCCGACATGCGCATTATGCCTCTCCTACCGGCTCAGCGCCCGAA
324 CAGAGGGGAACCGGACCGATCCCCGACATACGCATTATCCCTCTCCGACCGGCTCAGCGCCCGAA
* * * *
15801431 TGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGATCG
389 CGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCG
15801496 AGGGTT
454 AGGGTT
15801502 ATGGCAGCAG
Statistics
Matches: 386, Mismatches: 69, Indels: 6
0.84 0.15 0.01
Matches are distributed among these distances:
478 1 0.00
479 150 0.39
480 93 0.24
481 142 0.37
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (481 bp):
CATTCTGCCTCTCCGACAGGCTGAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAAGCATACGA
AGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGAACCGAACAGAGGGTT
ACAGCAGCAGCACCAGCAGCAGGATCAACAGCACACAAGGGGGACAGGGTCGATCCCAGACTTAC
GCATTCTACCTCTCCAACCGGCTGAGCGCCCGCACGCCCATTCCATGGGTTGGCTTAGGCATAGG
GAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCAGGACCGACAGCACACA
GAGGGGAACCGGACCGATCCCCGACATACGCATTATCCCTCTCCGACCGGCTCAGCGCCCGAACG
CTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAG
GGTTGCGGTAATAGGTTGATAAAGCG
Found at i:15801532 original size:158 final size:158
Alignment explanation
Indices: 15801277--15801639 Score: 410
Period size: 158 Copynumber: 2.3 Consensus size: 158
15801267 CCCGCACGTC
* ** *
15801277 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAACCCCAGCTGGACCGAGGGT
1 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAGCCGGACCGAGGGT
* ** **
15801342 TGTGGCAGTGGGACCGACAGCACGCAGAGGGGGACCGGGCTGATCCCCGA-CATGCGCATTATGC
66 TATGGCAGCAGGACCGACAGCACGCAGAGGGGGACCGGGCTGAT-CCCGAGCATGCGCATTACAC
*
15801406 CTCTCCTACCGGCTCAGCGCCCGA-ATGCT
130 CTCTCCGACCGGCTCAGCGCCC-ACATGCT
* ** *
15801435 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATTAGACCGGATCGAGG
1 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCAG-CCGGACCGAGG
* * * * * * * *
15801499 GTTATGGCAGCAGGATCGATAGCACGTAG-GGGGGACCGGGCTGGTTCCTAGCTTGCGCATTCCA
64 GTTATGGCAGCAGGACCGACAGCACGCAGAGGGGGACCGGGCTGATCCCGAGCATGCGCATTACA
** *
15801563 CCTCTCCGGTCGGCTGAGCGCCCACATGCT
129 CCTCTCCGACCGGCTCAGCGCCCACATGCT
* * *
15801593 TGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAG
1 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
15801640 CATATGGAGT
Statistics
Matches: 171, Mismatches: 29, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
157 7 0.04
158 129 0.75
159 35 0.20
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (158 bp):
CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAGCCGGACCGAGGGT
TATGGCAGCAGGACCGACAGCACGCAGAGGGGGACCGGGCTGATCCCGAGCATGCGCATTACACC
TCTCCGACCGGCTCAGCGCCCACATGCT
Found at i:15802842 original size:26 final size:26
Alignment explanation
Indices: 15802812--15802864 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15802802 GTTGACTTAG
15802812 GCATACAGAGTTCA-TCCTCAGTCTAA
1 GCATACAGAGTTCATTCC-CAGTCTAA
15802838 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15802864 G
1 G
15802865 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15803044 original size:26 final size:26
Alignment explanation
Indices: 15802995--15803047 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15802985 GTTATCTTAG
* *
15802995 GCATACGGAGTTCATTTCATGTCTAA
1 GCATACGAAGTTCATTCCATGTCTAA
15803021 GCATACGAAGTTCATTCCCA-GTCTAA
1 GCATACGAAGTTCATT-CCATGTCTAA
15803047 G
1 G
15803048 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATGTCTAA
Found at i:15803546 original size:26 final size:26
Alignment explanation
Indices: 15803510--15803562 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15803500 CTTGCCTTAG
15803510 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15803536 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15803562 G
1 G
15803563 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15803645 original size:15 final size:15
Alignment explanation
Indices: 15803622--15803651 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
15803612 ATTTTTTTCA
15803622 CCCGAGGCACCATCG
1 CCCGAGGCACCATCG
*
15803637 CCCGGGGCACCATCG
1 CCCGAGGCACCATCG
15803652 TCGGCGCATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.47, G:0.30, T:0.07
Consensus pattern (15 bp):
CCCGAGGCACCATCG
Found at i:15805187 original size:26 final size:25
Alignment explanation
Indices: 15805152--15805203 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 25
15805142 GTTGACTTAG
15805152 GCATAGGAGTTCAACT-CCAGTCTAA
1 GCATAGGAGTTC-ACTCCCAGTCTAA
*
15805177 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATA-GGAGTTCACTCCCAGTCTAA
15805203 G
1 G
15805204 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.25
Consensus pattern (25 bp):
GCATAGGAGTTCACTCCCAGTCTAA
Found at i:15805815 original size:13 final size:13
Alignment explanation
Indices: 15805797--15805823 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
15805787 TGCGTATTCT
15805797 GCCTCTTCGATCG
1 GCCTCTTCGATCG
15805810 GCCTCTTCGATCG
1 GCCTCTTCGATCG
15805823 G
1 G
15805824 ATGAGCACCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.07, C:0.37, G:0.26, T:0.30
Consensus pattern (13 bp):
GCCTCTTCGATCG
Found at i:15805889 original size:26 final size:26
Alignment explanation
Indices: 15805860--15805912 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15805850 GTTGACTTAG
15805860 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
*
15805886 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
15805912 G
1 G
15805913 ATTAGACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:15807302 original size:159 final size:158
Alignment explanation
Indices: 15807003--15807306 Score: 346
Period size: 159 Copynumber: 1.9 Consensus size: 158
15806993 GAAGGTTACA
* * * * * * *
15807003 ACAGCACGTAAGGGGGATCGGGCCGATCCCCAGCTTACGTATTCTACCTCTCCGGCCAGCTGAGT
1 ACAGCACGCAAGGGGGACCGGGCCGATCCCCAGCATACGCATTATACCTCTCCGGCCAGCTCAGC
* * * * * *
15807068 GCCCGCACGCTCGATTAATGGGTTGGCTTAGGCATAGGGAGTTCATTCCTTGTCTAAGGCCCAGT
66 GCACGAACGCTCGATTAATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGGACCAGT
*
15807133 CGGACCGAGGGTTGTGGTAGCGGGATCG
131 CGAACCGAGGGTTGTGGTAGCGGGATCG
* * *
15807161 ACAGCACGCAGAGGGGGACCGGGCCGATCCCC-GACATGCGCATTATGCCTCTCCGGCCGGCTCA
1 ACAGCACGCA-AGGGGGACCGGGCCGATCCCCAG-CATACGCATTATACCTCTCCGGCCAGCTCA
* * * *
15807225 GCGCACGAACGCTTGTTTCATGGGTTGACTTAGGTC-TACGGAGTTCATT-CTCAGTCTAA-GAT
64 GCGCACGAACGCTCGATTAATGGGTTGACTTAGG-CATACGGAGTTCATTCCT-AGTCTAAGGAC
15807287 CAGATCGAACCGAGGGTTGT
127 CAG-TCGAACCGAGGGTTGT
15807307 AGCAGTCAAA
Statistics
Matches: 120, Mismatches: 21, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
158 16 0.13
159 103 0.86
160 1 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.22
Consensus pattern (158 bp):
ACAGCACGCAAGGGGGACCGGGCCGATCCCCAGCATACGCATTATACCTCTCCGGCCAGCTCAGC
GCACGAACGCTCGATTAATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGGACCAGT
CGAACCGAGGGTTGTGGTAGCGGGATCG
Found at i:15807649 original size:26 final size:26
Alignment explanation
Indices: 15807613--15807664 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15807603 TGACTTTGGC
*
15807613 ATACGGAGTTCA-TCCCTAGTCTAAGA
1 ATACAGAGTTCATTCCC-AGTCTAAGA
15807639 ATACAGAGTTCATTCCCAGTCTAAGA
1 ATACAGAGTTCATTCCCAGTCTAAGA
15807665 TCAGATCAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGA
Found at i:15807665 original size:195 final size:197
Alignment explanation
Indices: 15807331--15807684 Score: 462
Period size: 195 Copynumber: 1.8 Consensus size: 197
15807321 TAGTACATAG
* *** *
15807331 GGGGGACCGGGTCGATCCACGACTTGCGCATTCTACCTCTCCGGTCGACTGATTGCCCGTACGCT
1 GGGGGACCGGGTCGATCCACGACTTGCACATTCTACCTCTCCGGTCGACTGAGCCCCCGCACGCT
* * * * *
15807396 CGTTTCATGGGTTGGCTTAGGCATAAGGACTTAATTCCATGTCTAAGCATACGGAGTTCATTCCT
66 CGTTTCATGGGTTGACTTAGGCATAAGGACTTAATCCCATGTCTAAGAATACAGAGTTCATTCCC
15807461 AGTCTAAGATCAGACCAGACTAAGGGTTGGGACAGTAGGACCAGCAGCAGGATTGGCAGGACACG
131 AGTCTAAGATCAGACCAGACTAAGGGTTGGGACAGTAGGACCAGCAGCAGGATTGGCAGGACACG
15807526 GA
196 GA
* * * * * *
15807528 GGGGGACCGGGTCGATCCCCGGCTTGCACATTCTACTTCTTC-GTCG-GTTAGCCCCCGCACGCT
1 GGGGGACCGGGTCGATCCACGACTTGCACATTCTACCTCTCCGGTCGACTGAGCCCCCGCACGCT
* * * * *
15807591 CGTTTCGTGGGTTGACTTTGGCATACGGAGTTCATCCC-TAGTCTAAGAATACAGAGTTCATTCC
66 CGTTTCATGGGTTGACTTAGGCATAAGGACTTAATCCCAT-GTCTAAGAATACAGAGTTCATTCC
* * *
15807655 CAGTCTAAGATCAGATCAGATTGAGGGTTG
130 CAGTCTAAGATCAGACCAGACTAAGGGTTG
15807685 CGGTAACAGG
Statistics
Matches: 132, Mismatches: 24, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
194 1 0.01
195 90 0.68
196 4 0.03
197 37 0.28
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.25
Consensus pattern (197 bp):
GGGGGACCGGGTCGATCCACGACTTGCACATTCTACCTCTCCGGTCGACTGAGCCCCCGCACGCT
CGTTTCATGGGTTGACTTAGGCATAAGGACTTAATCCCATGTCTAAGAATACAGAGTTCATTCCC
AGTCTAAGATCAGACCAGACTAAGGGTTGGGACAGTAGGACCAGCAGCAGGATTGGCAGGACACG
GA
Found at i:15808619 original size:26 final size:26
Alignment explanation
Indices: 15808589--15808641 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15808579 GTTGACTTAG
15808589 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
15808615 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15808641 G
1 G
15808642 AGTTTGATCC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15809347 original size:26 final size:26
Alignment explanation
Indices: 15809310--15809362 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15809300 GTTGACTTAG
15809310 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
15809336 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
15809362 G
1 G
15809363 ATCTGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:15809677 original size:158 final size:158
Alignment explanation
Indices: 15809336--15809678 Score: 365
Period size: 158 Copynumber: 2.2 Consensus size: 158
15809326 CCCAGTCTAA
* * * *
15809336 GCATACGGAGTTCATTCC-TAGTCTAAGATCTGATCGGATCGAGGGTTGCGACAACAGGATCGGA
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAGACCAGATCGAAGGTTGCGACAACAGGATCGGA
** * *
15809400 AGCACGCAGGGGGTATCAGGTCGATCCCCAGCTTGTGTATTATGCCTCTCCGGCCTGCTCAACGC
65 AGCACGCAGGGGGTATCAGGTCGATCCCCAGCTTAAGCATTATGCCTCTCCGGCCAGCTCAACGC
15809465 CCAAACCCTCGTTTCGTGGGTTGACTTAG
130 CCAAACCCTCGTTTCGTGGGTTGACTTAG
* * * ** *
15809494 GCATACAGAGTTCATTCCCA-ATCTAAGATCAGACCAGATTGAAGGTTGCGGTAACATGATC-GA
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACCAGATCGAAGGTTGCGACAACAGGATCGGA
* * * * * * * *
15809557 CAGCATGCAGGGGAG-ATCGGGTATG-TCCCCGGCTTAAGCATTCTGCCTCTCTGGCCAGCTGAG
65 -AGCACGCAGGGG-GTATCAGGT-CGATCCCCAGCTTAAGCATTATGCCTCTCCGGCCAGCTCAA
** *
15809620 CGCCCGCACGCTCGTTTCGTGGGTT-AGCTTAG
127 CGCCCAAACCCTCGTTTCGTGGGTTGA-CTTAG
15809652 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
15809679 CATACGGAGT
Statistics
Matches: 151, Mismatches: 27, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
157 6 0.04
158 141 0.93
159 4 0.03
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.25
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCAGATCGAAGGTTGCGACAACAGGATCGGAA
GCACGCAGGGGGTATCAGGTCGATCCCCAGCTTAAGCATTATGCCTCTCCGGCCAGCTCAACGCC
CAAACCCTCGTTTCGTGGGTTGACTTAG
Found at i:15809688 original size:26 final size:26
Alignment explanation
Indices: 15809652--15809704 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15809642 GTTAGCTTAG
15809652 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15809678 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15809704 G
1 G
15809705 ATCAGATTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15809911 original size:26 final size:26
Alignment explanation
Indices: 15809856--15809913 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 26
15809846 CATGGGTTGA
* *
15809856 CTAAGGCATACGGAGTTCATCCCTAGT
1 CTAA-GCATACAGAGTTCATCCCTAAT
15809883 CTAAGCATACAGAGTTCATTCCC-AAT
1 CTAAGCATACAGAGTTCA-TCCCTAAT
15809909 CTAAG
1 CTAAG
15809914 ATCAGATCGA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
26 20 0.71
27 8 0.29
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
CTAAGCATACAGAGTTCATCCCTAAT
Found at i:15810240 original size:26 final size:26
Alignment explanation
Indices: 15810204--15810256 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15810194 GTTGGCTTAG
15810204 GCATACGGAGTTCATTCCACA-TCTAA
1 GCATACGGAGTTCATTCC-CAGTCTAA
15810230 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15810256 G
1 G
15810257 AGTTTGAGCA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 2 0.08
26 24 0.92
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15811646 original size:26 final size:26
Alignment explanation
Indices: 15811609--15811661 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15811599 GATGACTTAG
15811609 GCATACAGAGTTCATCCTCAGTCTAA
1 GCATACAGAGTTCATCCTCAGTCTAA
*
15811635 GCATAC-GAAGTTCATTCTCAGTCTAA
1 GCATACAG-AGTTCATCCTCAGTCTAA
15811661 G
1 G
15811662 ATCATCCTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCTCAGTCTAA
Found at i:15811988 original size:26 final size:26
Alignment explanation
Indices: 15811952--15812004 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15811942 GTTGGCTTAG
15811952 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
15811978 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15812004 G
1 G
15812005 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Done.