Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19866354
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 74000 characters in sequence are not A, C, G, or T
File 69 of 100
Found at i:15813485 original size:26 final size:26
Alignment explanation
Indices: 15813449--15813499 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15813439 TTGGCTTAGG
15813449 CATACGGAGTTCATT-CCATGTCTAAT
1 CATACGGAGTTCATTCCCA-GTCTAAT
15813475 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
15813500 GATCAGACCG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAT
Found at i:15813643 original size:183 final size:184
Alignment explanation
Indices: 15813293--15814211 Score: 970
Period size: 184 Copynumber: 5.0 Consensus size: 184
15813283 TGACTTAGGT
* * *
15813293 ATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAAGATCGACAGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGACAGC
* * * * ** * * *
15813358 ATGCATGAGGGACCG-GACCG-TCCATGGCTTGTGCATTCTACCTCTCTGACCGGCTGAGCGCCC
66 ATGCAGGGGGGATCGAG-CCGATCCCTGGCTTACGCATTCTGCCTCTCCGACCGACTGAGCGCCC
* * * *
15813421 GCACGATCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAATC
130 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGC
* * **
15813476 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATC-ATGGGTTACAATAGCAGGATCGACAG
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGA-GGGTTGCGGTAGCAGGATCGACAG
* * * *
15813540 CATGCAGGGGGGACCGAGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCC
65 CATGCAGGGGGGATCGAGCCGATCCCTGGCTTACGCATTCTGCCTCTCCGACCGACTGAGCGCCC
* *
15813605 GTACGCTCGTTTCGTGGGTTGACTTAGGCATA-GGAGTTCATCCCCA-GTCTAAGC
130 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-TCCATGTCTAAGC
* * * * * *
15813659 ATAGGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAAGGTTGCGGCAGCAGGATCGACAGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGACAGC
*** * * * ** *
15813724 ACATAGGGGGGATCGGGCCGAT-CCTCGACTTACGCATTCTGCCTCTACGGGCTACTGAGCGCCC
66 ATGCAGGGGGGATCGAGCCGATCCCT-GGCTTACGCATTCTGCCTCTCCGACCGACTGAGCGCCC
* * * * *
15813788 ACACGATCATTTCATGGGTTGCCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
130 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGC
* * * ** * * **
15813843 ATACGGAGTCCATTTCTAGTCTAAGATTGGACCGGACCGAGGGTTGCGGTAACAAGATCGGTAGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGACAGC
* * * * * *** *
15813908 ATGCAGGGGGGATCGAGCCGATCCCTAGCTCACGCATTCTGCCTCTCCAGTCGGCCTTTTCGGCC
66 ATGCAGGGGGGATCGAGCCGATCCCTGGCTTACGCATTCTGCCTCTCC-GACCGACTGAGCGCCC
*
15813973 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGC
130 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-TCCATGTCTAAGC
* * ** * * * *
15814028 ATACGGAGTTCATTCCCAGTCTAAGATCAAACTGGATTGAGGTTTGCGGCAGTAGGATCGGCAGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGACAGC
* * * ** * * **
15814093 ACGCAGGGGGGATCGAGCCGATCCCCGGCTTACGCATTCTGTCTCTCCGACCGGTTGGGCACTGG
66 ATGCAGGGGGGATCGAGCCGATCCCTGGCTTACGCATTCTGCCTCTCCGACCGACTGAGCGCCCG
* * *
15814158 CACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
131 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGC
15814212 CCTAATCGGA
Statistics
Matches: 603, Mismatches: 121, Indels: 23
0.81 0.16 0.03
Matches are distributed among these distances:
182 4 0.01
183 221 0.37
184 227 0.38
185 148 0.25
186 3 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (184 bp):
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGACAGC
ATGCAGGGGGGATCGAGCCGATCCCTGGCTTACGCATTCTGCCTCTCCGACCGACTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGC
Found at i:15813669 original size:26 final size:25
Alignment explanation
Indices: 15813632--15813683 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
15813622 GTTGACTTAG
15813632 GCATAGGAGTTCATCCCCAGTCTAA
1 GCATAGGAGTTCATCCCCAGTCTAA
*
15813657 GCATAGGGAGTTCATTCCCAGTCTAA
1 GCATA-GGAGTTCATCCCCAGTCTAA
15813683 G
1 G
15813684 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 5 0.20
26 20 0.80
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (25 bp):
GCATAGGAGTTCATCCCCAGTCTAA
Found at i:15814036 original size:26 final size:26
Alignment explanation
Indices: 15814000--15814052 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15813990 GTTGACTTAG
15814000 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
15814026 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15814052 G
1 G
15814053 ATCAAACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15814177 original size:369 final size:367
Alignment explanation
Indices: 15813293--15814211 Score: 1022
Period size: 367 Copynumber: 2.5 Consensus size: 367
15813283 TGACTTAGGT
* * * * * *
15813293 ATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAAGATCGACAGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCAAATCAGACCGAAGGTTGCGGCAGCAGGATCGACAGC
** * * * ** * ** * * *
15813358 ATGCATGAGGGACCG-GACCG-TCCATGGCTTGTGCATTCTACCTCT-CTGACCGGCTGAGCGCC
66 ACACAGGGGGGATCGAG-CCGATCCCCGACTTACGCATTCTGCCTCTAC-GACCGACTGAGCACC
* * *
15813420 CGCACGATCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAATCATACGGAGT
129 CACACGACCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGT
* * * *
15813485 TCATTCCCAGTCTAAGATCAGACCGGATCATGGGTTACAATAGCAGGATCGACAGCATGCAGGGG
194 CCATTCCCAGTCTAAGATCAGACCGGACCATGGGTTACAATAACAAGATCGACAGCATGCAGGGG
* * ** *
15813550 GGACCGAGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGTACGCTCGT
259 GGACCGAGCCGATCCCTAGCTCACGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCGT
15813615 TTCGTGGGTTGACTTAGGCATAGGAGTTCATCCCCAGTCTAAGC
324 TTCGTGGGTTGACTTAGGCATAGGAGTTCATCCCCAGTCTAAGC
* **
15813659 ATAGGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAAGGTTGCGGCAGCAGGATCGACAGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCAAATCAGACCGAAGGTTGCGGCAGCAGGATCGACAGC
* * * ** * *
15813724 ACATAGGGGGGATCGGGCCGATCCTCGACTTACGCATTCTGCCTCTACGGGCTACTGAGCGCCCA
66 ACACAGGGGGGATCGAGCCGATCCCCGACTTACGCATTCTGCCTCTACGACCGACTGAGCACCCA
* * *
15813789 CACGATCATTTCATGGGTTGCCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTCC
131 CACGACCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTCC
* * ** * ** **
15813854 ATTTCTAGTCTAAGATTGGACCGGACCGA-GGGTTGCGGTAACAAGATCGGTAGCATGCAGGGGG
196 ATTCCCAGTCTAAGATCAGACCGGACC-ATGGGTTACAATAACAAGATCGACAGCATGCAGGGGG
* * * * *** *
15813918 GATCGAGCCGATCCCTAGCTCACGCATTCTGCCTCTCCAGTCGGCCTTTTCGGCCGCACGCTCGT
260 GACCGAGCCGATCCCTAGCTCACGCATTCTGCCTCTCC-GGCCGACTGAGCGCCCGCACGCTCGT
15813983 TTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
324 TTCGTGGGTTGACTTAGGCATA-GGAGTTCATCCCCAGTCTAAGC
* ** * *
15814028 ATACGGAGTTCATTCCCAGTCTAAGATCAAA-CTGGATTG-AGGTTTGCGGCAGTAGGATCGGCA
1 ATACGGAGTTCATTCCCAGTCTAAGATCAAATC-AGACCGAAGG-TTGCGGCAGCAGGATCGACA
* * * * ** * *
15814091 GCACGCAGGGGGGATCGAGCCGATCCCCGGCTTACGCATTCTGTCTCTCCGACCGGTTGGGCACT
64 GCACACAGGGGGGATCGAGCCGATCCCCGACTTACGCATTCTGCCTCTACGACCGACTGAGCACC
** * * *
15814156 GGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
129 CACACGACCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
15814212 CCTAATCGGA
Statistics
Matches: 461, Mismatches: 84, Indels: 13
0.83 0.15 0.02
Matches are distributed among these distances:
366 70 0.15
367 176 0.38
368 46 0.10
369 169 0.37
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (367 bp):
ATACGGAGTTCATTCCCAGTCTAAGATCAAATCAGACCGAAGGTTGCGGCAGCAGGATCGACAGC
ACACAGGGGGGATCGAGCCGATCCCCGACTTACGCATTCTGCCTCTACGACCGACTGAGCACCCA
CACGACCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTCC
ATTCCCAGTCTAAGATCAGACCGGACCATGGGTTACAATAACAAGATCGACAGCATGCAGGGGGG
ACCGAGCCGATCCCTAGCTCACGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCGTTT
CGTGGGTTGACTTAGGCATAGGAGTTCATCCCCAGTCTAAGC
Found at i:15814838 original size:197 final size:197
Alignment explanation
Indices: 15814477--15814838 Score: 503
Period size: 197 Copynumber: 1.8 Consensus size: 197
15814467 AACGCCCGCA
* * *
15814477 CGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAATTCATTCCATGTCTAAGCATACGGAGTTCAT
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGAAATTCATCCCATGTCTAAGCATACGAAGTTCAT
* * * * * *
15814542 TCCCAATCTAAGATCAAATCAGACTGAGGGTTGTGGCAGCAGGATTGGCACCACGTAAGGGGGAT
66 TCCCAATCTAAGATCAAATCAAACTGAGGGTTGCGACAGCAGGATCGGCACCACGCAAGGGGGAC
* * * * **
15814607 CGGGTCGATCCCTGGCTTGCGTGTTCTACCTCTCCGGTCAGCCTCTCTGGTCGATTGAGCGTCCG
131 CAGGCCGATCCCCGGCTTACGCATTCTACCTCTCCGGTCAGCCTCTCTGGTCGATTGAGCGTCCG
15814672 TT
196 TT
* *
15814674 CGCTCGTTTCGTGGGTTGACTTAGGCATAC-AGAGTTCATCCCCA-GTCTAAGCATATGAAGTTC
1 CGCTCGTTTCGTGGGTTGACTTAGGCATACGA-AATTCAT-CCCATGTCTAAGCATACGAAGTTC
* * *
15814737 ATTCCCAATCTAAGATCGAATCAAACTGAGGGTTGCGACAGCAGGATCGGCAGCACGCAGGGGGG
64 ATTCCCAATCTAAGATCAAATCAAACTGAGGGTTGCGACAGCAGGATCGGCACCACGCAAGGGGG
*
15814802 ACCAGGCCGATCCCCGGCTTACGCATTCTGCCTCTCC
129 ACCAGGCCGATCCCCGGCTTACGCATTCTACCTCTCC
15814839 AGTCGGCTGA
Statistics
Matches: 142, Mismatches: 21, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
196 1 0.01
197 138 0.97
198 3 0.02
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.25
Consensus pattern (197 bp):
CGCTCGTTTCGTGGGTTGACTTAGGCATACGAAATTCATCCCATGTCTAAGCATACGAAGTTCAT
TCCCAATCTAAGATCAAATCAAACTGAGGGTTGCGACAGCAGGATCGGCACCACGCAAGGGGGAC
CAGGCCGATCCCCGGCTTACGCATTCTACCTCTCCGGTCAGCCTCTCTGGTCGATTGAGCGTCCG
TT
Found at i:15815228 original size:26 final size:26
Alignment explanation
Indices: 15815198--15815250 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15815188 GTTGGCATAG
*
15815198 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTAATTCCCA-GTCTAA
15815224 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
15815250 G
1 G
15815251 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:15816149 original size:11 final size:13
Alignment explanation
Indices: 15816118--15816152 Score: 70
Period size: 13 Copynumber: 2.7 Consensus size: 13
15816108 TGTGCATTCT
15816118 GCCTCTCTGGTTG
1 GCCTCTCTGGTTG
15816131 GCCTCTCTGGTTG
1 GCCTCTCTGGTTG
15816144 GCCTCTCTG
1 GCCTCTCTG
15816153 ATCGGCTGAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.00, C:0.34, G:0.29, T:0.37
Consensus pattern (13 bp):
GCCTCTCTGGTTG
Found at i:15817253 original size:26 final size:26
Alignment explanation
Indices: 15817215--15817267 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15817205 GTTAACTTAG
**
15817215 GCATATGTTGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
*
15817241 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
15817267 G
1 G
15817268 ATGAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:15824222 original size:26 final size:26
Alignment explanation
Indices: 15824186--15824238 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15824176 GTTGGCTTAG
15824186 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15824212 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15824238 G
1 G
15824239 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15824414 original size:197 final size:197
Alignment explanation
Indices: 15824079--15824435 Score: 500
Period size: 197 Copynumber: 1.8 Consensus size: 197
15824069 GGGTTGTGAC
* * * *
15824079 AGCAGGATCGATAGCACACAGGAAGGGACTGGGTTGGTCCCCGACTTGCACATTCTGCCTCTCCG
1 AGCAGGATAGATAGCACACAGGAAGGGACCGAGTTGATCCCCGACTTGCACATTCTGCCTCTCCG
* * * * * * * *
15824144 GCCGGTTGAGCACCCGCTCGCTCGTTTCTTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
66 GCCAGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCATGTC
* *
15824209 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGTAGGATCG
131 TAAGCATACAGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGGCAGTAGGATCG
15824274 GT
196 GT
* * * *
15824276 AGCAGGATAGGTAGCACACAGGGAGGGACCGAGTTGATCCCCGACTTGCGCATTCTTCCTCTCCG
1 AGCAGGATAGATAGCACACAGGAAGGGACCGAGTTGATCCCCGACTTGCACATTCTGCCTCTCCG
** *
15824341 GCCAGCTGAGTGCCTGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCA-GT
66 GCCAGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCAT-CCCATGT
*
15824405 CTAAGCATACAGAGTTCATTTCCAATCTAAG
130 CTAAGCATACAGAGTTCATTCCCAATCTAAG
15824436 CCCACACGCC
Statistics
Matches: 137, Mismatches: 22, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
197 134 0.98
198 3 0.02
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (197 bp):
AGCAGGATAGATAGCACACAGGAAGGGACCGAGTTGATCCCCGACTTGCACATTCTGCCTCTCCG
GCCAGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCATGTC
TAAGCATACAGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGGCAGTAGGATCG
GT
Found at i:15824813 original size:26 final size:26
Alignment explanation
Indices: 15824783--15824835 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15824773 GTTGGATTAG
15824783 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
15824809 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15824835 G
1 G
15824836 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15825009 original size:26 final size:26
Alignment explanation
Indices: 15824980--15825031 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
15824970 TTGACTTAGC
*
15824980 CATACAGAGTTTATCCCCAGTCTAAG
1 CATACAGAGTTCATCCCCAGTCTAAG
* * *
15825006 CATACGGAGTTCATTCCTAGTCTAAG
1 CATACAGAGTTCATCCCCAGTCTAAG
15825032 ATCGGATCAG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATCCCCAGTCTAAG
Found at i:15826640 original size:26 final size:26
Alignment explanation
Indices: 15826591--15826640 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
15826581 GACTTAGACT
*
15826591 TACGGAGTTCATCCCTAGTCTAAGCA
1 TACGGAGTTCATCCCTAGTATAAGCA
15826617 TACGGAGTTCATTCCC-AGTATAAG
1 TACGGAGTTCA-TCCCTAGTATAAG
15826641 ATCACACCAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATCCCTAGTATAAGCA
Found at i:15826967 original size:26 final size:26
Alignment explanation
Indices: 15826931--15826983 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15826921 GTTGGCTTAG
15826931 GCATACGAAGTTCATTCC-ATGTCTAA
1 GCATACGAAGTTCATTCCTA-GTCTAA
15826957 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
15826983 G
1 G
15826984 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:15827588 original size:26 final size:26
Alignment explanation
Indices: 15827558--15827608 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15827548 GTTGACTTAG
*
15827558 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
15827584 GCATACGAAGTTCATTCCCAGTCTA
1 GCATACGAAGTTCATCCCCAGTCTA
15827609 CGATCGGATC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:15828138 original size:348 final size:341
Alignment explanation
Indices: 15827485--15828936 Score: 1244
Period size: 348 Copynumber: 4.3 Consensus size: 341
15827475 ATCACCCGTT
* * ** * *
15827485 CGATCCCTGGCTTGCGCATCCTGCCTCTCTGGTCGGCTGAGCGACCGCACGCTCGTTTCATGGGT
1 CGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCATGGGT
* * * *
15827550 TGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACGAAGTTCATTCCCAGTCTAC-GAT
66 TGACTTAGGCATACGAAGTTCAT-TCCATGTCTAAGCATACG-GGTTCATTCCTAGTCTACAGAT
* * * * * * * *
15827613 CGGATCAGACCGAGGGTTACGACAGTAGGATCGACAACACGCAGGGGGGATCGGGCCGATCCCCG
129 CGGATCGGACCGAAGGTTACGATAGCAGGATCGACAGCGCGCAGGGGGGATCGGGTCGATCCCTG
* ** *
15827678 ACTTGCGCATTCTACCTCTCCGTTCGACTGAGCGCCCGCACGCCTGTTTCATGGGTTGGCTTAGG
194 ACTTGTGCATTCTACCTCTCCGGCCGGCTGAGCGCCCGCACGCCTGTTTCATGGGTTGGCTTAGG
* * * **
15827743 GATAGGGAGTTCATTCCATGTCTGAGCCCCAACCAGACCGAGGGATGTCGCAGTAGGACCGGTAA
259 CATA-GGAGTTCATTCCACGTCT-AACCCCAGTCAGACCGAGGGATGTCGCAGTAGGACCGGTAA
* *
15827808 CACGTAGAGTGGGATCGGGC
322 CACGTAGAGTGGGACCGAGC
* * * *
15827828 CGATCCCTGGCTTGCGCATTTTGCCTCTCCGACCGACTGAGTGCCCGCACGCTTGTTTCGTGGGT
1 CGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCATGGGT
* * *
15827893 TGGCTTAGGCATACGGAGTTCATTCCATGCCTAAGCATACAGGGTTCATTCCTAGTCTAAGATCA
66 TGACTTAGGCATACGAAGTTCATTCCATGTCTAAGCATAC-GGGTTCATTCCTAGTCT---A-CA
* * ** * *
15827958 GATCGGATCGGATCGAAGGTTACGATAGCAGGATCGACAGCGCGTAAAGGGGACCGGGTCAATCC
126 GATCGGATCGGACCGAAGGTTACGATAGCAGGATCGACAGCGCGCAGGGGGGATCGGGTCGATCC
* * * ** ** * *
15828023 CTGACTTGTGCATTCTAGCTCTTCGGCCGGTTGAATGCCTACCCGTCTGTTTCATGGGTTGGCTT
191 CTGACTTGTGCATTCTACCTCTCCGGCCGGCTGAGCGCCCGCACGCCTGTTTCATGGGTTGGCTT
* * * *
15828088 AGGCATACGGAGTTCATTCCACGTCTAACCCCCAGTCAAACCGAGGGATGTGGCAGTGGGACAGG
256 AGGCATA-GGAGTTCATTCCACGTCTAA-CCCCAGTCAGACCGAGGGATGTCGCAGTAGGACCGG
* *
15828153 CAACACGCAGAGTGGGACCGAGC
319 TAACACGTAGAGTGGGACCGAGC
* * *
15828176 CGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGTACACTCGTTTCATGGGT
1 CGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCATGGGT
* * *
15828241 TGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGCATATGGGGTTCATTCCTAGTCTA-AGATC
66 TGACTTAGGCATACGAAGTTCATTCCATGTCTAAGCATA-CGGGTTCATTCCTAGTCTACAGATC
* * *
15828305 GGACCGGACCGAAGGTTGCAACTA-CAGGATCGACAGCGCGCAGGGGGGATCGGGTCGAT-CCTC
130 GGATCGGACCGAAGGTTACGA-TAGCAGGATCGACAGCGCGCAGGGGGGATCGGGTCGATCCCT-
*
15828368 GACTTGTGCATTCTACCTCTCCGGCCGGCTGAGCACCCGCACGCCCT-TTTCATGGGTTGGCTTA
193 GACTTGTGCATTCTACCTCTCCGGCCGGCTGAGCGCCCGCACG-CCTGTTTCATGGGTTGGCTTA
* *** * *
15828432 AGCATAGGAGTTCATTCC-CAGTCTAA-GATAGGATCAGACCGAGGGTTG-CGACAGTAGGATCG
257 GGCATAGGAGTTCATTCCAC-GTCTAACCCCA-G-TCAGACCGAGGGATGTCG-CAGTAGGACCG
* * *
15828494 ATAGCACGTAG-GAGGGACCGAGC
318 GTAACACGTAGAGTGGGACCGAGC
* * * *** * * * *
15828517 CG-TCCCTGGCTTGCACATTCTGCGTCTCCGACC-AGCTCAGCTTTCGAATGCTAGTTTCGTGGG
1 CGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGA-CTGAGCGCCCGCACGCTCGTTTCATGGG
*
15828580 TTGACTTAGGCATAC---G---A----A-GT-T---C--A----TTC---CC-AGTCTA-AGATT
65 TTGACTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGGGTTCATTCCTAGTCTACAGATC
* * * * * * * * *
15828619 GGATCGGACCAAGGGTTGCGGTAGCAGGATCGACAGCACGCAGGGGGGATCGAGCCGATCCCCGG
130 GGATCGGACCGAAGGTTACGATAGCAGGATCGACAGCGCGCAGGGGGGATCGGGTCGATCCCTGA
** * ** * *
15828684 CTTACGCATTCTGCCTCTTTGGCCAGCTGAGCACCCGCACGTCC-GTTTCATGGGTTGGCTTAGG
195 CTTGTGCATTCTACCTCTCCGGCCGGCTGAGCGCCCGCACG-CCTGTTTCATGGGTTGGCTTAGG
* * * * * * *
15828748 CATAGGGAGTTCATTCTATGTCTAAGCCCCAGTCGGACCGAGAGTTGTGGCAG-CGAGACCGGTA
259 CATA-GGAGTTCATTCCACGTCTAA-CCCCAGTCAGACCGAGGGATGTCGCAGTAG-GACCGGTA
* ** *
15828812 GCACACAGAGGGGGACC-AGGC
321 ACACGTAGAGTGGGACCGA-GC
* * * * * * * *
15828833 CAAT-CCTCGACTTGCGCATTCTACCTCTCTGACCTG-CTGAGCACCCGTAAGCTCGTTTCGTGG
1 CGATCCCT-GGCTTGCGCATTCTGCCTCTCCGACC-GACTGAGCGCCCGCACGCTCGTTTCATGG
* *
15828896 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATA
64 GTTGACTTAGGCATACGAAGTTCATTCCATGTCTAAGCATA
15828937 TGAAATTCAT
Statistics
Matches: 899, Mismatches: 161, Indels: 107
0.77 0.14 0.09
Matches are distributed among these distances:
313 2 0.00
314 119 0.13
315 50 0.06
316 15 0.02
317 58 0.06
318 3 0.00
320 1 0.00
323 2 0.00
325 1 0.00
327 1 0.00
328 3 0.00
329 3 0.00
330 1 0.00
332 1 0.00
334 2 0.00
337 1 0.00
340 63 0.07
341 16 0.02
342 52 0.06
343 210 0.23
344 5 0.01
345 1 0.00
346 1 0.00
347 2 0.00
348 286 0.32
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (341 bp):
CGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCATGGGT
TGACTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGGGTTCATTCCTAGTCTACAGATCG
GATCGGACCGAAGGTTACGATAGCAGGATCGACAGCGCGCAGGGGGGATCGGGTCGATCCCTGAC
TTGTGCATTCTACCTCTCCGGCCGGCTGAGCGCCCGCACGCCTGTTTCATGGGTTGGCTTAGGCA
TAGGAGTTCATTCCACGTCTAACCCCAGTCAGACCGAGGGATGTCGCAGTAGGACCGGTAACACG
TAGAGTGGGACCGAGC
Found at i:15828772 original size:158 final size:158
Alignment explanation
Indices: 15828275--15828932 Score: 553
Period size: 157 Copynumber: 4.2 Consensus size: 158
15828265 CCATGTCTAA
* * * * **
15828275 GCATATGGGGTTCATTCCTAGTCTAAGATCGGACCGGACCGAA-GGTTGCAACTA-CAGGATCGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACC-AAGGGTTGCGGC-AGCAGGATCGA
* * * * * * *
15828338 CAGCGCGCAGGGGGGATCGGGTCGATCCTCGACTTGTGCATTCTACCTCTCCGGCCGGCTGAGCA
64 CAGCACGCAGGGGGGATCGAGCCGATCCCCGACTTGCGCATTCTACCTCTCCGACCAGCTGAGCA
* * *
15828403 CCCGCACGCCCTTTTCATGGGTTGGCTTAA
129 CCCGCACGCTCGTTTCATGGGTTGGCTTAG
* * * * * *
15828433 GCATA-GGAGTTCATTCCCAGTCTAAGATAGGATCAGACCGAGGGTTGCGACAGTAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTGCGGCAGCAGGATCGACA
* * * * * * * * * ***
15828497 GCACGTAGGAGGGACCGAGCCG-TCCCTGGCTTGCACATTCTGCGTCTCCGACCAGCTCAGCTTT
66 GCACGCAGGGGGGATCGAGCCGATCCCCGACTTGCGCATTCTACCTCTCCGACCAGCTGAGCACC
* * * * *
15828561 CGAATGCTAGTTTCGTGGGTTGACTTAG
131 CGCACGCTCGTTTCATGGGTTGGCTTAG
* * *
15828589 GCATACGAAGTTCATTCCCAGTCTAAGATTGGATCGGACCAAGGGTTGCGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTGCGGCAGCAGGATCGACA
* * * ** *
15828654 GCACGCAGGGGGGATCGAGCCGATCCCCGGCTTACGCATTCTGCCTCTTTGGCCAGCTGAGCACC
66 GCACGCAGGGGGGATCGAGCCGATCCCCGACTTGCGCATTCTACCTCTCCGACCAGCTGAGCACC
15828719 CGCACG-TCCGTTTCATGGGTTGGCTTAG
131 CGCACGCT-CGTTTCATGGGTTGGCTTAG
* * * ** * * * *
15828747 GCATAGGGAGTTCATT-CTATGTCTAAG-CCCCAGTCGGACCGAGAGTTGTGGCAGC-GAGACCG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGA-TCGGACCAAGGGTTGCGGCAGCAG-GATCG
** * * * * * *
15828809 GTAGCACACAGAGGGGGA-CCAGGCCAATCCTCGACTTGCGCATTCTACCTCTCTGACCTGCTGA
63 ACAGCACGCAG-GGGGGATCGA-GCCGATCCCCGACTTGCGCATTCTACCTCTCCGACCAGCTGA
* * *
15828873 GCACCCGTAAGCTCGTTTCGTGGGTTGGCTTAG
126 GCACCCGCACGCTCGTTTCATGGGTTGGCTTAG
15828906 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
15828933 CATATGAAAT
Statistics
Matches: 397, Mismatches: 92, Indels: 21
0.78 0.18 0.04
Matches are distributed among these distances:
156 56 0.14
157 137 0.35
158 110 0.28
159 93 0.23
160 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGGGGGGATCGAGCCGATCCCCGACTTGCGCATTCTACCTCTCCGACCAGCTGAGCACC
CGCACGCTCGTTTCATGGGTTGGCTTAG
Found at i:15829144 original size:26 final size:26
Alignment explanation
Indices: 15829115--15829193 Score: 115
Period size: 26 Copynumber: 3.0 Consensus size: 26
15829105 GTTGACTTAG
15829115 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
15829141 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
15829167 GCATA-TAGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATCCCCAGTCTAA
15829193 G
1 G
15829194 ATCAGACTAG
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:15829525 original size:26 final size:26
Alignment explanation
Indices: 15829495--15829547 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
15829485 GTTGACGTAG
15829495 GCATAC-GAAGTTCATT-CCATGTCTAA
1 GCATACAG-AGTTCATTCCCA-GTCTAA
*
15829521 GCATACAGTGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15829547 G
1 G
15829548 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15830741 original size:26 final size:26
Alignment explanation
Indices: 15830711--15830763 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15830701 GTTGACTTAG
*
15830711 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15830737 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15830763 G
1 G
15830764 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15831151 original size:329 final size:330
Alignment explanation
Indices: 15830543--15831240 Score: 1089
Period size: 329 Copynumber: 2.1 Consensus size: 330
15830533 TGCCCGAACG
* * * *
15830543 CTCGTTTCGTGGGTTGACTTA-GCATATGGAGTTCATTCCCAAGTATCAAGATTGGATCGGACCG
1 CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAAGTATCAAGATTGGACCGGACCG
* *
15830607 AGGATTGCGACAATATGCAGGGGGGCCAGGCCGGTTCCTGGCTTGCGCATTCTGCCTCTCCGACC
66 AGGATTGCGACAATATGCAGGGGGGCCAGGCCGGTGCCTGGCTTACGCATTCTGCCTCTCCGACC
* *
15830672 TGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
131 TACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
* *
15830737 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACTGTAGCAGGATTGGCA
196 GCATACAAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATTGGCA
* * *
15830802 GCATGCAGGGGGATCTGGTCGATCCCTGGCTTACACATTCTGCCTCTCCGATCGACTGAGCGCTC
261 GCACGCAGGGGGACCTGGTCGATCCCTAGCTTACACATTCTGCCTCTCCGATCGACTGAGCGCTC
15830867 GTC-CA
326 G-CACA
* * *
15830872 CTCGTTGCATGGGTTGGCTTAGGCATACGGAGTTCATTCCC-AGTCT-AGGATTGGACCGGACCG
1 CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAAGTATCAAGATTGGACCGGACCG
*
15830935 AGGATTGCGACAATATGCAAGGGGGGCCAGGCTGGTGCCTGGCTTACGCATTCTGCCTCTCCGAC
66 AGGATTGCGACAATATGC-AGGGGGGCCAGGCCGGTGCCTGGCTTACGCATTCTGCCTCTCCGAC
*
15831000 CTACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
130 CTACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
* *
15831065 AGCATACAAAGTTCATTCCCAGTCTATGATCAGACTAGACCGAGGGTTACGGTAGCAGGATTGGC
195 AGCATACAAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATTGGC
* * * * **
15831130 AGCACGTAGGGGGACCTGGTCGATCCTTAGCTTACGCATTCTGCCTCTCCGGTCGGTTGAGCGCT
260 AGCACGCAGGGGGACCTGGTCGATCCCTAGCTTACACATTCTGCCTCTCCGATCGACTGAGCGCT
*
15831195 CGCACG
325 CGCACA
* *
15831201 CCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCC
1 CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCC
15831241 ATGTCTAAGC
Statistics
Matches: 336, Mismatches: 30, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
328 34 0.10
329 284 0.85
330 18 0.05
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (330 bp):
CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAAGTATCAAGATTGGACCGGACCG
AGGATTGCGACAATATGCAGGGGGGCCAGGCCGGTGCCTGGCTTACGCATTCTGCCTCTCCGACC
TACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
GCATACAAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATTGGCA
GCACGCAGGGGGACCTGGTCGATCCCTAGCTTACACATTCTGCCTCTCCGATCGACTGAGCGCTC
GCACA
Found at i:15831377 original size:159 final size:159
Alignment explanation
Indices: 15831164--15831568 Score: 398
Period size: 159 Copynumber: 2.5 Consensus size: 159
15831154 CCTTAGCTTA
** ** * * * * * * *
15831164 CGCATTCTGCCTCTCCGGTCGGTTGAGCGCTCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAG
1 CGCATTCTGCCTCTCCGACCGACTGAGCGCACGTACACTCATTTCGTGGCTTGGCTTAGGCATAG
**** * * * * *
15831229 GGAGTTCATTCCATGTCTAAGCCCCAGTTGGACCAAGGGTTGTGGCAGCGGGA-CTGGCAGCACG
66 GGAGTTCATTCCATGTCTAAGCCCCAACCAGACCAAGGGATGTCGCAGCAGGATC-GACAACACG
15831293 CAGAGGGGGACCGAGCCGATCCCTGACTTG
130 CAGAGGGGGACCGAGCCGATCCCTGACTTG
* * *
15831323 TGCATTCTGCCTCTCTGACCGACTGAGCGCACGTACACTCATTTTGTGGCTTGGCTTAGGCATAG
1 CGCATTCTGCCTCTCCGACCGACTGAGCGCACGTACACTCATTTCGTGGCTTGGCTTAGGCATAG
* * * * * *
15831388 GGAGTTCATTCCAGGTCTGAGCCCCAACCAGATCGAGGGATGTCGCAGTAGGATCGACAACACGT
66 GGAGTTCATTCCATGTCTAAGCCCCAACCAGACCAAGGGATGTCGCAGCAGGATCGACAACACGC
* * * *
15831453 AGAGTGGGATCGGGCCGATCCCTGGCTTG
131 AGAGGGGGACCGAGCCGATCCCTGACTTG
* * * * * * * * *
15831482 CGCATTTTGCCTCTCCGATCGACTGAGTGCCCGTACGCTCGTTTCGTGGGTTAGCTTAGGCATAC
1 CGCATTCTGCCTCTCCGACCGACTGAGCGCACGTACACTCATTTCGTGGCTTGGCTTAGGCATAG
* *
15831547 GAAGTTCATTCCATGCCTAAGC
66 GGAGTTCATTCCATGTCTAAGC
15831569 ATACGGGTTT
Statistics
Matches: 196, Mismatches: 49, Indels: 2
0.79 0.20 0.01
Matches are distributed among these distances:
159 195 0.99
160 1 0.01
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (159 bp):
CGCATTCTGCCTCTCCGACCGACTGAGCGCACGTACACTCATTTCGTGGCTTGGCTTAGGCATAG
GGAGTTCATTCCATGTCTAAGCCCCAACCAGACCAAGGGATGTCGCAGCAGGATCGACAACACGC
AGAGGGGGACCGAGCCGATCCCTGACTTG
Found at i:15831812 original size:502 final size:501
Alignment explanation
Indices: 15830972--15831907 Score: 1213
Period size: 502 Copynumber: 1.9 Consensus size: 501
15830962 CAGGCTGGTG
*
15830972 CCTGGCTTACGCATTCTGCCTCTCCGACCTACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
1 CCTGGCTTACGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
* * * *
15831037 TAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAAAGTTCATTCCCAGTCTATGATCAGACTA
66 TAGGCATACGAAGTTCATCCCCAGCCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCAGACCA
* ** * * * *
15831102 GACCGAGGGTTACGGTAGCAGGATTGGCAGCACGTAGGGGGACCTGGTCGATCCTTAGCTTACGC
131 GACCGAAGGTTACAATAGCAGGATCGACAGCACGCAGGGGGACCTGGTCGATCCTGAGCTTACGC
* *
15831167 ATTCTGCCTCTCCGGTCGGTTGAGCGCTCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGA
196 ATTCTGCCTCTCCGATCGGCTGAGCGCTCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGA
* * * * * *
15831232 GTTCATTCCATGTCTAAGCCCCAGTTGGACCAAGGGTTGTGGCAGCGGGACTGGCAGCACGCAGA
261 GTTCATTCCACGTCTAACCCCCAGTCGGACCAAGGGATGTGGCAGCGGGACCGGCAACACGCAGA
* * * *
15831297 GGGGGACCGAGCCGATCCCTGACTTGTGCATTCTGCCTCTCTGACCGACTGAGCGCACGTACACT
326 GGGGGACCGAGCCGATCCCTGACGTGCGCATTCTGCCTCTCCGACCGACTGAACGCACGTACACT
** *
15831362 CATTTTGTGGCTTGGCTTAGGCATAGGGAGTTCATTCCAGGTCTGAGCCCCAACCAGATCGAGGG
391 CATTTCATGGCTTGGCTTAGGCATACGGAGTTCATTCCAGGTCTGAGCCCCAACCAGATCGAGGG
15831427 ATGTCGCAGTAGGATCGACAACACGTAGAGTGGGATCGGGCCGATC
456 ATGTCGCAGTAGGATCGACAACACGTAGAGTGGGATCGGGCCGATC
* * * * *
15831473 CCTGGCTTGCGCATTTTGCCTCTCCGATCGACTGAGTGCCCGTACGCTCGTTTCGTGGGTT-AGC
1 CCTGGCTTACGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA-C
* ** *
15831537 TTAGGCATACGAAGTTCAT-TCCATGCCTAAGCATAC-GGGTTTCATTCCTAGTCTAAGATCAGA
65 TTAGGCATACGAAGTTCATCCCCA-GCCTAAGCATACAAAG-TTCATTCCCAGTCTAAGATCAGA
* * * *
15831600 CCGGATCGAAGGTTACAATAGTAGGATCGACAGCGCGCAGAGGGGACC-GGATCGATCCCTGA-C
128 CCAGACCGAAGGTTACAATAGCAGGATCGACAGCACGCAG-GGGGACCTGG-TCGAT-CCTGAGC
** * * *
15831663 TTGTGCATTCTAG-CTCTTCGATCGGCTGAATGC-CT-GCCCGTCCGTTTCATGGGTTGGCTTAG
190 TTACGCATTCT-GCCTCTCCGATCGGCTG-A-GCGCTCGCACGCCCGTTTCATGGGTTGGCTTAG
* * *
15831725 GCATATGGAGTTCATTCCACGTCTAACCCCCAGTCGGACCGAGGGATGTGGCAGTGGGACCGGCA
252 GCATAGGGAGTTCATTCCACGTCTAACCCCCAGTCGGACCAAGGGATGTGGCAGCGGGACCGGCA
* * * * * *
15831790 ACATGCAGAGTGGGATCGAGCCGATCCCTGGCGTGCGCATTCTGCCTCTCCGATCGGCTGAACGC
317 ACACGCAGAGGGGGACCGAGCCGATCCCTGACGTGCGCATTCTGCCTCTCCGACCGACTGAACGC
* * * *
15831855 CCGTACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
382 ACGTACACTCATTTCATGGCTTGGCTTAGGCATACGGAGTTCATTCCAGGTCT
15831908 AAGCATATGG
Statistics
Matches: 368, Mismatches: 58, Indels: 17
0.83 0.13 0.04
Matches are distributed among these distances:
500 5 0.01
501 137 0.37
502 216 0.59
503 8 0.02
504 2 0.01
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (501 bp):
CCTGGCTTACGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
TAGGCATACGAAGTTCATCCCCAGCCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCAGACCA
GACCGAAGGTTACAATAGCAGGATCGACAGCACGCAGGGGGACCTGGTCGATCCTGAGCTTACGC
ATTCTGCCTCTCCGATCGGCTGAGCGCTCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGA
GTTCATTCCACGTCTAACCCCCAGTCGGACCAAGGGATGTGGCAGCGGGACCGGCAACACGCAGA
GGGGGACCGAGCCGATCCCTGACGTGCGCATTCTGCCTCTCCGACCGACTGAACGCACGTACACT
CATTTCATGGCTTGGCTTAGGCATACGGAGTTCATTCCAGGTCTGAGCCCCAACCAGATCGAGGG
ATGTCGCAGTAGGATCGACAACACGTAGAGTGGGATCGGGCCGATC
Found at i:15831914 original size:26 final size:26
Alignment explanation
Indices: 15831884--15831936 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15831874 GTTGGCTTAG
15831884 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
* *
15831910 GCATATGGGGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
15831936 G
1 G
15831937 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:15831926 original size:343 final size:342
Alignment explanation
Indices: 15831373--15832092 Score: 978
Period size: 343 Copynumber: 2.1 Consensus size: 342
15831363 ATTTTGTGGC
* * * *
15831373 TTGGCTTAGGCATAGGGAGTTCATTCCAGGTCTGAGCCCCAACCAGATCGAGGGATGTCGCAGTA
1 TTGGCTTAGGCATA-GGAGTTCATTCCACGTCTAACCCCCAACCAGACCGAGGGATGTCGCAGTA
* * * * *
15831438 GGATCGACAACACGTAGAGTGGGATCGGGCCGATCCCTGGCTTGCGCATTTTGCCTCTCCGATCG
65 GGACCGACAACACGCAGAGTGGGATCGAGCCGATCCCTGGCGTGCGCATTCTGCCTCTCCGATCG
** * *
15831503 ACTGAGTGCCCGTACGCTCGTTTCGTGGGTTAGCTTAGGCATACGAAGTTCATTCCATGCCTAAG
130 ACTGAACGCCCGTACACTCGTTTCATGGGTTAGCTTAGGCATACGAAGTTCATTCCATGCCTAAG
* * *
15831568 CATACGGGTTTCATTCCTAGTCTAAGATCAGACCGGATCGAAGGTTACAA-TAGTAGGATCGACA
195 CATACGGGGTTCATTCCTAGTCTAAGATCAGACCGGACCGAAGGTTACAACTA-CAGGATCGACA
* * **
15831632 GCGCGCAGAGGGGACCGGATCGATCC-CTGACTTGTGCATTCTAGCTCTTCGATCGGCTGAATGC
259 GCGCGCAGAGGGGACCGGATCGATCCTC-GACTTGTGCATTCTACCTCTCCGATCGGCTGAACAC
* * *
15831696 CTGCCCGTCCGTTTCATGGG
323 CCGCACGCCCGTTTCATGGG
** * * *
15831716 TTGGCTTAGGCATATGGAGTTCATTCCACGTCTAACCCCCAGTCGGACCGAGGGATGTGGCAGTG
1 TTGGCTTAGGCATA-GGAGTTCATTCCACGTCTAACCCCCAACCAGACCGAGGGATGTCGCAGTA
* *
15831781 GGACCGGCAACATGCAGAGTGGGATCGAGCCGATCCCTGGCGTGCGCATTCTGCCTCTCCGATCG
65 GGACCGACAACACGCAGAGTGGGATCGAGCCGATCCCTGGCGTGCGCATTCTGCCTCTCCGATCG
* * * *
15831846 GCTGAACGCCCGTACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
130 ACTGAACGCCCGTACACTCGTTTCATGGGTTAGCTTAGGCATACGAAGTTCATTCCATGCCTAAG
* *
15831911 CATATGGGGTTCATTCCTAGTCTAAGATCAGACCGGACCGAAGGTTGCAACTACAGGATCGACAG
195 CATACGGGGTTCATTCCTAGTCTAAGATCAGACCGGACCGAAGGTTACAACTACAGGATCGACAG
* * * * * *
15831976 CGCGTAGGGGGGATCGGGTTGATCCTCGACTTGTGCATTCTACCTCTCCGATCGGCTGAGCACCC
260 CGCGCAGAGGGGACCGGATCGATCCTCGACTTGTGCATTCTACCTCTCCGATCGGCTGAACACCC
*
15832041 GCATGCCCGTTTCATGGG
325 GCACGCCCGTTTCATGGG
*
15832059 TTGGCTTAAGCATAGGAGTTCATTCC-CAGTCTAA
1 TTGGCTTAGGCATAGGAGTTCATTCCAC-GTCTAA
15832093 GATCGGATTA
Statistics
Matches: 329, Mismatches: 45, Indels: 7
0.86 0.12 0.02
Matches are distributed among these distances:
341 1 0.00
342 18 0.05
343 307 0.93
344 3 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (342 bp):
TTGGCTTAGGCATAGGAGTTCATTCCACGTCTAACCCCCAACCAGACCGAGGGATGTCGCAGTAG
GACCGACAACACGCAGAGTGGGATCGAGCCGATCCCTGGCGTGCGCATTCTGCCTCTCCGATCGA
CTGAACGCCCGTACACTCGTTTCATGGGTTAGCTTAGGCATACGAAGTTCATTCCATGCCTAAGC
ATACGGGGTTCATTCCTAGTCTAAGATCAGACCGGACCGAAGGTTACAACTACAGGATCGACAGC
GCGCAGAGGGGACCGGATCGATCCTCGACTTGTGCATTCTACCTCTCCGATCGGCTGAACACCCG
CACGCCCGTTTCATGGG
Found at i:15832419 original size:158 final size:158
Alignment explanation
Indices: 15831910--15832567 Score: 589
Period size: 157 Copynumber: 4.2 Consensus size: 158
15831900 CCATGTCTAA
* * * * * ** *
15831910 GCATATGGGGTTCATTCCTAGTCTAAGATCAGACCGGACCGAAGGTTGCAACTA-CAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGC-GGTAGCAGGATCGGC
* * ** * * ** * *
15831974 AGCGCGTAGGGGGGATCGGGTTGATCCTCGACTTGTGCATTCTACCTCTCCGATCGGCTGAGCAC
65 AGCACGTAGGGGGGATCGAGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGACCGGCTGAGCAC
* * *
15832039 CCGCATGCCCGTTTCATGGGTTGGCTTAA
130 CCGCACGCCCATTTCATGGGTTGGCTTAG
* ** * *
15832068 GCATA-GGAGTTCATTCCCAGTCTAAGATCGGATTAGACCGAGGGTTGCGACT-GCAGGATCGGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCG-GTAGCAGGATCGGC
* * * * * **
15832131 AGCACGCAGGGGGGACCGAGCCG-TCCCCGGCTTGCACATTCTGCGTCTCCGACCAGCTCAGCTT
65 AGCACGTAGGGGGGATCGAGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGACCGGCTGAGCAC
* * * * *
15832195 CCGAATG-CTAGTTTCATGGTTTGACTTAG
130 CCGCACGCCCA-TTTCATGGGTTGGCTTAG
* *
15832224 GCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTGCGGTAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGTAGCAGGATCGGCA
* *
15832289 GCACGTAGGGGGGATCGAGCCGATCCCCGGCTTGCACATTCTGCCTCTCTGGCCGGCTGAGCACC
66 GCACGTAGGGGGGATCGAGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGACCGGCTGAGCACC
* *
15832354 CGCACGTCCATTTCGTGGGTTGGCTTAG
131 CGCACGCCCATTTCATGGGTTGGCTTAG
* * ** * * * *
15832382 GCATAGGGAGTTCATT-CTATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGCGGGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGACCGAGGGTTGCGGTAGCAGGATCGG
* ** * * * * *
15832445 TAGCACACAAAGGGGGA-CCAGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACCTGCTGAG
64 CAGCAC-GTAGGGGGGATCGA-GCCGATCCCCGGCTTGCACATTCTGCCTCTCCGACCGGCTGAG
* * **
15832509 CGCTCGCAC-CCTCATTTTGTGGGTTGGCTTAG
127 CACCCGCACGCC-CATTTCATGGGTTGGCTTAG
15832541 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
15832568 CATATGAAAT
Statistics
Matches: 407, Mismatches: 81, Indels: 23
0.80 0.16 0.05
Matches are distributed among these distances:
155 1 0.00
156 57 0.14
157 135 0.33
158 113 0.28
159 101 0.25
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGTAGCAGGATCGGCA
GCACGTAGGGGGGATCGAGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGACCGGCTGAGCACC
CGCACGCCCATTTCATGGGTTGGCTTAG
Found at i:15832779 original size:26 final size:26
Alignment explanation
Indices: 15832750--15832828 Score: 124
Period size: 26 Copynumber: 3.0 Consensus size: 26
15832740 GTTGACTTAG
15832750 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
15832776 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
15832802 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATCCCCAGTCTAA
15832828 G
1 G
15832829 ATCAGACTAG
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:15833159 original size:26 final size:26
Alignment explanation
Indices: 15833130--15833182 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
15833120 GTTGACGTAG
15833130 GCATAC-GAAGTTCATT-CCATGTCTAA
1 GCATACAG-AGTTCATTCCCA-GTCTAA
*
15833156 GCATACAGTGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15833182 G
1 G
15833183 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15834118 original size:21 final size:21
Alignment explanation
Indices: 15834092--15834141 Score: 91
Period size: 21 Copynumber: 2.4 Consensus size: 21
15834082 TTGTGGCAGC
15834092 GGGACCGGCAGCACCCAGAAG
1 GGGACCGGCAGCACCCAGAAG
*
15834113 GGGACCGGCAGCACCCAGAGG
1 GGGACCGGCAGCACCCAGAAG
15834134 GGGACCGG
1 GGGACCGG
15834142 GCTGATCCTA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.24, C:0.32, G:0.44, T:0.00
Consensus pattern (21 bp):
GGGACCGGCAGCACCCAGAAG
Found at i:15834399 original size:26 final size:26
Alignment explanation
Indices: 15834363--15834415 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15834353 GTTGACTTAG
15834363 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
15834389 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15834415 G
1 G
15834416 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15834690 original size:159 final size:158
Alignment explanation
Indices: 15834428--15834727 Score: 381
Period size: 159 Copynumber: 1.9 Consensus size: 158
15834418 CAGACCAGAT
* *
15834428 CGAGGGTTGCGGTAGCAGGATTGGCAGCACGCAGGGGGGACCTGGTCGATCCCTAGCTTATGCAT
1 CGAGGGTTGCGGCAGCAGGACTGGCAGCACGCAGGGGGGACCTGGTCGATCCCTAGCTTATGCAT
** * * * **
15834493 TCTGCCTCTCCGGTCGACTGAGCGCTCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGAAGT
66 TCTGCCTCTCCGACCGACTGAGCGCCCGCACGCCCGTTTCATGGCTTAGCTTAGGCATACAAAGT
15834558 TCATTCCATGTATATGCCCCAGCCGGAC
131 TCATTCCATGTATATGCCCCAGCCGGAC
* * * *
15834586 CGAGGGTTGTGGCAGCGGGACTGGCAGCACGCAGAGGGGGATC-GAG-CTGATCCCT-GACTTGT
1 CGAGGGTTGCGGCAGCAGGACTGGCAGCACGCAG-GGGGGACCTG-GTC-GATCCCTAG-CTTAT
* * * *
15834648 GCATTCTGCCTCTCCGACCGGCTGAGCGCCCGTACGCTCGTTTCGTGGCTTAGCTTAGGCATACA
62 GCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCCCGTTTCATGGCTTAGCTTAGGCATACA
*
15834713 AAGTTCATTGCATGT
127 AAGTTCATTCCATGT
15834728 CTAATCATAC
Statistics
Matches: 120, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
158 33 0.28
159 87 0.73
ACGTcount: A:0.17, C:0.27, G:0.32, T:0.24
Consensus pattern (158 bp):
CGAGGGTTGCGGCAGCAGGACTGGCAGCACGCAGGGGGGACCTGGTCGATCCCTAGCTTATGCAT
TCTGCCTCTCCGACCGACTGAGCGCCCGCACGCCCGTTTCATGGCTTAGCTTAGGCATACAAAGT
TCATTCCATGTATATGCCCCAGCCGGAC
Found at i:15836075 original size:355 final size:355
Alignment explanation
Indices: 15835429--15836076 Score: 847
Period size: 355 Copynumber: 1.8 Consensus size: 355
15835419 CATTTCGTGA
* * *
15835429 GTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGAT
1 GTTGACTTAGGCATACGGAGTTCATCCCCACTCTAAGCATAAGAAGTTCATTCCCAGTCTAAGAT
* * * *
15835494 TGAACCAGATCGAAGGTTGCAGTAGAAGGATTGGCAGCGCGCAGGGGGGACCTAGCCGATCCCTG
66 AGAACCAGACCGAAGGTTGCAGTAGAAGGATCGGCAGCACGCAGGGGGGA-CTAGCCGATCCCTG
* * * * * * *
15835559 ACTTGCACATTCTGCCTCTCCGGCCAGCTGAGCGCCCGCACGCCTGTTTCGTGGGTTGGCTTAGG
130 ACTTGCACATTCTGCCTCACCGGCCAGCTGAGCACCCCCACACCCGTTCCATGGGTTGGCTTAGG
* * ** *
15835624 CATAGGGAGTTCATTCCAAGTCTAAGTCCCAATCGGATCGAGGGTTGTGGTAACAGGACCGGCAG
195 CATAGGGAGTTCATTCCAAGTCTAAGCCCCAACCGGATCGAGGGTTGTGACAACAGGACCGACAG
* * * *
15835689 CATGCAAGGGGGGACTGTGTCGATCCCCGACTTATGCATTTTGCATCTTCGATCGGCCTCTCCGG
260 CACGCAAAGGGGGACCGGGTCGATCCCCGACTTATGCATTTTGCATCTTCGATCGGCCTCTCCGG
15835754 TCGTCTCAATGCCCGCACGCTTGTTTCATGG
325 TCGTCTCAATGCCCGCACGCTTGTTTCATGG
*
15835785 GTTGACTTAGGCATACGGAGTTCATCCCCACTCTAAGCATATAG-AGTTCATTTCCAGTCTAAGA
1 GTTGACTTAGGCATACGGAGTTCATCCCCACTCTAAGCATA-AGAAGTTCATTCCCAGTCTAAGA
* * ** * * * * *
15835849 TCAG-ACCGGACCGAGGGTTGTGGTAGCAGTATCGGCAGCACGTAGGGGGG-CTGGGCCGATCTC
65 T-AGAACCAGACCGAAGGTTGCAGTAGAAGGATCGGCAGCACGCAGGGGGGACT-AGCCGATCCC
* * *
15835912 TGACTTGCGCATTCTGCCTCACCGGCCGGTTGAGCACCCCCACACCCGTTCCATGGGTTGGCTTA
128 TGACTTGCACATTCTGCCTCACCGGCCAGCTGAGCACCCCCACACCCGTTCCATGGGTTGGCTTA
* * * *
15835977 GGCATAGGGAGTTCATTCCATGTGTAAGCCCCAACCGGA-CTGAGGGTTGTGACAGCTGGACCGA
193 GGCATAGGGAGTTCATTCCAAGTCTAAGCCCCAACCGGATC-GAGGGTTGTGACAACAGGACCGA
15836041 CAGCACGCAAAGGGGGACCGGG-CTGATCCCCGACTT
257 CAGCACGCAAAGGGGGACCGGGTC-GATCCCCGACTT
15836077 GCGTATTATG
Statistics
Matches: 247, Mismatches: 40, Indels: 11
0.83 0.13 0.04
Matches are distributed among these distances:
354 4 0.02
355 146 0.59
356 95 0.38
357 2 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (355 bp):
GTTGACTTAGGCATACGGAGTTCATCCCCACTCTAAGCATAAGAAGTTCATTCCCAGTCTAAGAT
AGAACCAGACCGAAGGTTGCAGTAGAAGGATCGGCAGCACGCAGGGGGGACTAGCCGATCCCTGA
CTTGCACATTCTGCCTCACCGGCCAGCTGAGCACCCCCACACCCGTTCCATGGGTTGGCTTAGGC
ATAGGGAGTTCATTCCAAGTCTAAGCCCCAACCGGATCGAGGGTTGTGACAACAGGACCGACAGC
ACGCAAAGGGGGACCGGGTCGATCCCCGACTTATGCATTTTGCATCTTCGATCGGCCTCTCCGGT
CGTCTCAATGCCCGCACGCTTGTTTCATGG
Found at i:15836331 original size:26 final size:26
Alignment explanation
Indices: 15836291--15836348 Score: 82
Period size: 26 Copynumber: 2.2 Consensus size: 26
15836281 CGTGGGTTGG
*
15836291 CTAAGGCATATGGAGTTCATT-CCATGT
1 CTAA-GCATAAGGAGTTCATTCCCA-GT
15836318 CTAAGCATAAGGAGTTCATTCCCAGT
1 CTAAGCATAAGGAGTTCATTCCCAGT
15836344 CTAAG
1 CTAAG
15836349 ATCAGACCGG
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
26 22 0.76
27 7 0.24
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (26 bp):
CTAAGCATAAGGAGTTCATTCCCAGT
Found at i:15836820 original size:159 final size:157
Alignment explanation
Indices: 15836555--15837021 Score: 454
Period size: 159 Copynumber: 2.9 Consensus size: 157
15836545 GATCAGACTG
** * * * *
15836555 GACCGAGGGTTACAACAGCAAGATC-AGCAGCACGCAGGGGGGATC-GAGCCGATCCCTGGCTTG
1 GACCGAGGGTTACGGCAGCAGGATCGA-CAACACACAGGGGGGACCAGA-CCGATCCCTGGCTTG
* * * * *
15836618 CGTATTCTACCTCTCCGATCGGCTGAGCGCCCGCACGCCCATTTCGTGGGATGGCTTAGGCATAT
64 CGCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAT
15836683 GGAGTTCATTCCATGTCTAAGCCCCAACCA
129 -GAGTTCATTCCATGTCTAAGCCCCAACCA
* * * * * *
15836713 GACCGAGTGTTATGGCAGCGGGATCGACAACACACAGAGGGGGACTAGATCGATCCCCGGCTTGC
1 GACCGAGGGTTACGGCAGCAGGATCGACAACACACAG-GGGGGACCAGACCGATCCCTGGCTTGC
* * * * * * *
15836778 GCATTATGCCTCTCCGGTTGGCTTAACGCCCGAACGCTCATTTTGTGGGTTGACTTAGGCATACT
65 GCATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATA-T
***** * *
15836843 GAGTTCATTCCCA-GTCTAAGATTGGATCG
129 GAGTTCATT-CCATGTCTAAGCCCCAACCA
* * * ** * **
15836872 GACCGAGGGTTGCGGTAGCAGGATCGACATCATGCAGGGGGGACCAGGCCGATCCCTGGCTTGTA
1 GACCGAGGGTTACGGCAGCAGGATCGACAACACACAGGGGGGACCAGACCGATCCCTGGCTTGCG
* * * * *
15836937 CATTCTGCCTCTCTGGTCGGCTGAGCACCCGCACGTTCGTTTCGTGGGTTGGCTTAGGCATACAG
66 CATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATA-TG
15837002 AGTTCATTCCATGTCTAAGC
130 AGTTCATTCCATGTCTAAGC
15837022 ATATAGAGTT
Statistics
Matches: 245, Mismatches: 58, Indels: 12
0.78 0.18 0.04
Matches are distributed among these distances:
157 3 0.01
158 117 0.48
159 119 0.49
160 6 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (157 bp):
GACCGAGGGTTACGGCAGCAGGATCGACAACACACAGGGGGGACCAGACCGATCCCTGGCTTGCG
CATTCTGCCTCTCCGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATATGA
GTTCATTCCATGTCTAAGCCCCAACCA
Found at i:15836996 original size:158 final size:158
Alignment explanation
Indices: 15836520--15837020 Score: 472
Period size: 158 Copynumber: 3.2 Consensus size: 158
15836510 TCAGTCTAAC
* * * * ** ** *
15836520 CATACGGATTTCATTCCAAGTCTAAGA-TCAGACTGGACCGAGGGTTACAACAGCAAGATC-AGC
1 CATACTGAGTTCATTCCATGTCTAAGACCCA-ACCAGACCGAGGGTTACGGCAGCAGGATCGA-C
* * * * *
15836583 AGCACGCAGGGGGGATC-GAGCCGATCCCTGGCTTGCGTATTCTACCTCTCCGATCGGCTGAGCG
64 AACACGCAGGGGGGACCAG-GCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCG
* *
15836647 CCCGCACGCCCATTTCGTGGGATGGCTTAGG
128 CCCGCACGCTCATTTCGTGGGTTGGCTTAGG
* * * *
15836678 CATA-TGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGTGTTATGGCAGCGGGATCGACA
1 CATACT-GAGTTCATTCCATGTCTAAGACCCAACCAGACCGAGGGTTACGGCAGCAGGATCGACA
* * ** * * * * *
15836742 ACACACAGAGGGGGACTAGATCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTTGGCTTAACGC
65 ACACGCAG-GGGGGACCAGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGC
* * *
15836807 CCGAACGCTCATTTTGTGGGTTGACTTAGG
129 CCGCACGCTCATTTCGTGGGTTGGCTTAGG
**** * * * *
15836837 CATACTGAGTTCATTCCCA-GTCTAAGATTGGATCGGACCGAGGGTTGCGGTAGCAGGATCGACA
1 CATACTGAGTTCATT-CCATGTCTAAGACCCAACCAGACCGAGGGTTACGGCAGCAGGATCGACA
* * ** * *
15836901 TCATGCAGGGGGGACCAGGCCGATCCCTGGCTTGTACATTCTGCCTCTCTGGTCGGCTGAGCACC
65 ACACGCAGGGGGGACCAGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCC
* *
15836966 CGCACGTTCGTTTCGTGGGTTGGCTTAGG
130 CGCACGCTCATTTCGTGGGTTGGCTTAGG
*
15836995 CATACAGAGTTCATTCCATGTCTAAG
1 CATACTGAGTTCATTCCATGTCTAAG
15837021 CATATAGAGT
Statistics
Matches: 270, Mismatches: 65, Indels: 16
0.77 0.19 0.05
Matches are distributed among these distances:
157 3 0.01
158 141 0.52
159 121 0.45
160 5 0.02
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (158 bp):
CATACTGAGTTCATTCCATGTCTAAGACCCAACCAGACCGAGGGTTACGGCAGCAGGATCGACAA
CACGCAGGGGGGACCAGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCC
GCACGCTCATTTCGTGGGTTGGCTTAGG
Found at i:15837044 original size:26 final size:26
Alignment explanation
Indices: 15836994--15837046 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15836984 GTTGGCTTAG
*
15836994 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
*
15837020 GCATATAGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
15837046 G
1 G
15837047 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:15837226 original size:26 final size:26
Alignment explanation
Indices: 15837190--15837242 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15837180 GTTGACTTAG
15837190 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
15837216 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
15837242 G
1 G
15837243 ATCAGGCTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:15837349 original size:697 final size:699
Alignment explanation
Indices: 15835776--15837408 Score: 1869
Period size: 698 Copynumber: 2.3 Consensus size: 699
15835766 CCGCACGCTT
* * ** *
15835776 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCACTCTAAGCATATAGAGTTCATTTCCA
1 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCCA
* ** * * *
15835841 GTCTAAGATCAGACCGGACCGAGGGTTGTGGTAGCAGTATCGGCAGCACGTAGGGGGG-CTGGGC
66 GTCTAAGATCAGACTGGACCGAGGGTTACGGTAGCAGGATCGGCAGCACGCAGGGGGGATTGGGC
* * * * * * * * * *
15835905 CGAT-CTCTGACTTGCGCATTCTGCCTCACCGGCCGGTTGAGCACCCCCACACCCGTTCCATGGG
131 CGATCCCCAG-CTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCCCATTTCGTGGG
* * * * *
15835969 TTGGCTTAGGCATAGGGAGTTCATTCCATGTGTAAGCCCCAACCGGACTGAGGGTTGTGACAGCT
195 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTATGACAGCG
* * * * * * *
15836034 GGACCGACAGCACGCAAAGGGGGACCGGGCTGATCCCCGACTTGCGTATTATGCCTTTTCGATCG
260 GGACCGACAACACACAAAGGGGGACAGAGCTGATCCCCGACTTGCGCATTATGCCTCTCCGATCG
* * * * *
15836099 GTTTAGCACCCGAATGCTCGTTTCATTGGTTGACTTAGGCATACAGAGTTAATTCCCAGTCTAAG
325 GCTTAACACCCGAACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTAATTCCCAGTCTAAG
* * ** * * *
15836164 ATTGGGCCGGACGGAAGGTTACAGTAGCAGGATCGACAGCACGTTGGGGGGGATCGGGTCGATCC
390 ATTGGACCGGACCGAAGGTTACAGTAGCAGGATCGACAGCACGTCAGGGGGGACCAGGCCGATCC
* * *
15836229 CTGGCTTACACATTCTACCTCTCTGATCGACTGAGCGCTCGTACGCTTGTTTCGTGGGTTGGCTA
455 CTGGCTTACACATTCTACCTCTCTGATCGACTGAGCACCCGCACGCTTGTTTCGTGGGTTGGCTA
** *
15836294 AGGCATATGGAGTTCATTCCATGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCAGACCGG
520 AGGCATACAGAGTTCATTCCATGTCTAAGCATAAGGAGTTCATTCCCAATCTAAGATCAGACCGG
* * * * * * * * * * * * *
15836359 ATCGAGTGTTGCGGTAGTAAGACTAGTAGCAGTACTGGTAGCATGCAGAGGAGGACCGGGTCGAT
585 ACCAAGGGTTGCGGCAGCAAGACCAGCAACAGGACTGGTAGCACGCAGAGGAGGACCAGGCCAAT
* * * ** * * **
15836424 CCTCGGCTTATGCATTCTACCTCTCCGGTCGACTGAGCGCCCGTATGCTC
650 CCCCAGCTTACGCATTCTACCTCTCCGACCGACTAAGCACCCGTACACTC
* * * * * *
15836474 GTTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCTCAGTCTAACCATACGGATTTCATTCCAA
1 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCCA
*** * * * *
15836539 GTCTAAGATCAGACTGGACCGAGGGTTACAACAGCAAGATCAGCAGCACGCAGGGGGGATCGAGC
66 GTCTAAGATCAGACTGGACCGAGGGTTACGGTAGCAGGATCGGCAGCACGCAGGGGGGATTGGGC
** * * ** *
15836604 CGATCCCTGGCTTGCGTATTCTACCTCTCCGATCGGCTGAGCGCCCGCACGCCCATTTCGTGGGA
131 CGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCCCATTTCGTGGGT
* * *
15836669 TGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGTGTTATGGCAGCGG
196 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTATGACAGCGG
* * * * * *
15836734 GATCGACAACACACAGAGGGGGACTAGATC-GATCCCCGGCTTGCGCATTATGCCTCTCCGGTTG
261 GACCGACAACACACAAAGGGGGAC-AGAGCTGATCCCCGACTTGCGCATTATGCCTCTCCGATCG
* ** * *
15836798 GCTTAACGCCCGAACGCTCATTTTGTGGGTTGACTTAGGCATACTGAGTTCATTCCCAGTCTAAG
325 GCTTAACACCCGAACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTAATTCCCAGTCTAAG
* * * * * *
15836863 ATTGGATCGGACCGAGGGTTGCGGTAGCAGGATCGACATCATG-CAGGGGGGACCAGGCCGATCC
390 ATTGGACCGGACCGAAGGTTACAGTAGCAGGATCGACAGCACGTCAGGGGGGACCAGGCCGATCC
** * * *
15836927 CTGGCTTGTACATTCTGCCTCTCTGGTCGGCTGAGCACCCGCACG-TTCGTTTCGTGGGTTGGCT
455 CTGGCTTACACATTCTACCTCTCTGATCGACTGAGCACCCGCACGCTT-GTTTCGTGGGTTGGCT
* * *
15836991 TAGGCATACAGAGTTCATTCCATGTCTAAGCATATA-GAGTTCATTCCCAATCTAAGATCGGACT
519 AAGGCATACAGAGTTCATTCCATGTCTAAGCATA-AGGAGTTCATTCCCAATCTAAGATCAGACC
* * * *
15837055 GGACCAAGGGTTGTGGCAGCAGGACCAGCAACAGGA-TCGGTCGCACGCAG-GGGGGACCAGGCC
583 GGACCAAGGGTTGCGGCAGCAAGACCAGCAACAGGACT-GGTAGCACGCAGAGGAGGACCAGGCC
* * * *
15837118 AATCCCCAGCTTACGCATTCTGCCTCTCCGACCGGCTAAGCACCCGTACATTG
647 AATCCCCAGCTTACGCATTCTACCTCTCCGACCGACTAAGCACCCGTACACTC
15837171 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCCA
1 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCCA
* * ** * * *
15837236 GTCTAAGATCAGGCTAGTTCGATGGTTACGGTAGCAGGATTGGCAGCACGCAGGGGGGATTGGGT
66 GTCTAAGATCAGACTGGACCGAGGGTTACGGTAGCAGGATCGGCAGCACGCAGGGGGGATTGGGC
* * * *
15837301 CGATCCCCAGCTTGCACATTCTGCCTCTTCGGCCGACTGAGCGCCCGCACGCCCAGTTCGTGGGT
131 CGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCCCATTTCGTGGGT
* * * *
15837366 TGGTTTAGGAATAGGGAGTTGATTCAATGTCTAAGCCCCAACC
196 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACC
15837409 GAACTGAAGG
Statistics
Matches: 766, Mismatches: 163, Indels: 13
0.81 0.17 0.01
Matches are distributed among these distances:
697 254 0.33
698 263 0.34
699 245 0.32
700 4 0.01
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.24
Consensus pattern (699 bp):
GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCCA
GTCTAAGATCAGACTGGACCGAGGGTTACGGTAGCAGGATCGGCAGCACGCAGGGGGGATTGGGC
CGATCCCCAGCTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCACGCCCATTTCGTGGGT
TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTATGACAGCGG
GACCGACAACACACAAAGGGGGACAGAGCTGATCCCCGACTTGCGCATTATGCCTCTCCGATCGG
CTTAACACCCGAACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTAATTCCCAGTCTAAGA
TTGGACCGGACCGAAGGTTACAGTAGCAGGATCGACAGCACGTCAGGGGGGACCAGGCCGATCCC
TGGCTTACACATTCTACCTCTCTGATCGACTGAGCACCCGCACGCTTGTTTCGTGGGTTGGCTAA
GGCATACAGAGTTCATTCCATGTCTAAGCATAAGGAGTTCATTCCCAATCTAAGATCAGACCGGA
CCAAGGGTTGCGGCAGCAAGACCAGCAACAGGACTGGTAGCACGCAGAGGAGGACCAGGCCAATC
CCCAGCTTACGCATTCTACCTCTCCGACCGACTAAGCACCCGTACACTC
Found at i:15837447 original size:18 final size:19
Alignment explanation
Indices: 15837424--15837464 Score: 75
Period size: 18 Copynumber: 2.2 Consensus size: 19
15837414 GAAGGTTGTG
15837424 GCAGTGGGATTGGTA-CAC
1 GCAGTGGGATTGGTAGCAC
15837442 GCAGTGGGATTGGTAGCAC
1 GCAGTGGGATTGGTAGCAC
15837461 GCAG
1 GCAG
15837465 AGGGGGACCG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 15 0.68
19 7 0.32
ACGTcount: A:0.22, C:0.17, G:0.41, T:0.20
Consensus pattern (19 bp):
GCAGTGGGATTGGTAGCAC
Found at i:15837720 original size:26 final size:26
Alignment explanation
Indices: 15837682--15837737 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
15837672 TGGGTTGGCT
*
15837682 TAAGCATACGGAGTTCATT-CCATGTC
1 TAAGCAGACGGAGTTCATTCCCA-GTC
*
15837708 TAAGCAGATGGAGTTCATTCCCAGTC
1 TAAGCAGACGGAGTTCATTCCCAGTC
15837734 TAAG
1 TAAG
15837738 ATCAGACTGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 24 0.89
27 3 0.11
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (26 bp):
TAAGCAGACGGAGTTCATTCCCAGTC
Found at i:15838229 original size:26 final size:26
Alignment explanation
Indices: 15838195--15838249 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 26
15838185 GGGTTGGCTA
*
15838195 AAGCATACGAATTTCATTC-CATGTCT
1 AAGCATACGAAGTTCATTCTCA-GTCT
* *
15838221 AAGCTTACGGAGTTCATTCTCAGTCT
1 AAGCATACGAAGTTCATTCTCAGTCT
15838247 AAG
1 AAG
15838250 ATTAGACCGG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (26 bp):
AAGCATACGAAGTTCATTCTCAGTCT
Found at i:15838443 original size:26 final size:26
Alignment explanation
Indices: 15838407--15838459 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15838397 GTTGACATAG
*
15838407 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTCCATCCCCAGTCTAA
* *
15838433 GCATATGGAGTCCATTCCCAGTCTAA
1 GCATACGGAGTCCATCCCCAGTCTAA
15838459 G
1 G
15838460 ATCGAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTCCATCCCCAGTCTAA
Found at i:15839836 original size:26 final size:26
Alignment explanation
Indices: 15839800--15839852 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15839790 GTTGACTTAG
* *
15839800 GCATACGGAGTTCCTCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
15839826 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
15839852 G
1 G
15839853 ATTGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:15840172 original size:25 final size:25
Alignment explanation
Indices: 15840143--15840210 Score: 136
Period size: 25 Copynumber: 2.7 Consensus size: 25
15840133 GTTGACTTAG
15840143 GCATACGGAGTTCATTCCATGCTAA
1 GCATACGGAGTTCATTCCATGCTAA
15840168 GCATACGGAGTTCATTCCATGCTAA
1 GCATACGGAGTTCATTCCATGCTAA
15840193 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
15840211 TAGTCTAAGA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCATGCTAA
Found at i:15840936 original size:26 final size:26
Alignment explanation
Indices: 15840900--15840952 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15840890 GTTGACTTAG
15840900 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
15840926 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
15840952 G
1 G
15840953 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:15841102 original size:26 final size:26
Alignment explanation
Indices: 15841072--15841124 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15841062 GTTGTCTTAG
15841072 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
15841098 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15841124 G
1 G
15841125 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15842127 original size:159 final size:158
Alignment explanation
Indices: 15841857--15842328 Score: 454
Period size: 158 Copynumber: 3.0 Consensus size: 158
15841847 TTTGGATCGA
** * * * * ***
15841857 ACCGGACTAAGGGTTAC-GCCAGCAGGATCGACAGCACGCAGGAGGGA-CTGGGCTGATCCCTGG
1 ACCGGACCGAGGGTTACAG-CAGCAAGATCGATAGCACGCAGGGGGGATC-GGGCCGATCCCCAA
* *
15841920 CTTACGCATTCTGCCTCTCCGGTCGGCTGAGCACCCGCATGC-CTGTTTCGTGGGTTGGCTTAGG
64 CTTGCGCATTCTGCCTCTCCGATCGGCTGAGCACCCGCATGCTC-GTTTCGTGGGTTGGCTTAGG
*
15841984 CATAGTGAGTTCATTCCATGTCTAAGCCCTAG
128 CATAG-GAGTTCATTCCATGTCTAAGCACTAG
* *** * *
15842016 -TCGGACCGAGGGTTGTGGCAGCAAGATCGGTAGCACGTAGAGGGGGATCGGGCCGATCCCCAAC
1 ACCGGACCGAGGGTTACAGCAGCAAGATCGATAGCACGCAG-GGGGGATCGGGCCGATCCCCAAC
* * * * * * *
15842080 TTGCGCATTATGCCTCTTCGATCGGTTCAGCACCCGAACGCTCGTTTCGTGGGTTGACTTAGGCA
65 TTGCGCATTCTGCCTCTCCGATCGGCTGAGCACCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCA
* *
15842145 TACGGAGTTCATTCCCA-GTCTAAG-ATTGG
130 TA-GGAGTTCATT-CCATGTCTAAGCACTAG
* * * * * *
15842174 ACCGGATCGAGGGTTACAGTAGTAGGATCGATAGCACGCAGGGGGGATCGGGTCGGTCCCCAACT
1 ACCGGACCGAGGGTTACAGCAGCAAGATCGATAGCACGCAGGGGGGATCGGGCCGATCCCCAACT
* * * * * *
15842239 TGTGCATTCTGCCTCTCCGACCGACTGAGCGCCCTCATGCTC-TTATCGTGGGTTGGATTAGGCA
66 TGCGCATTCTGCCTCTCCGATCGGCTGAGCACCCGCATGCTCGTT-TCGTGGGTTGGCTTAGGCA
*
15842303 TACAGAGTTCATTCCATGTCTAAGCA
130 TA-GGAGTTCATTCCATGTCTAAGCA
15842329 TACGGAGTTC
Statistics
Matches: 251, Mismatches: 52, Indels: 20
0.78 0.16 0.06
Matches are distributed among these distances:
157 5 0.02
158 120 0.48
159 120 0.48
160 6 0.02
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.24
Consensus pattern (158 bp):
ACCGGACCGAGGGTTACAGCAGCAAGATCGATAGCACGCAGGGGGGATCGGGCCGATCCCCAACT
TGCGCATTCTGCCTCTCCGATCGGCTGAGCACCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCAT
AGGAGTTCATTCCATGTCTAAGCACTAG
Found at i:15842300 original size:158 final size:158
Alignment explanation
Indices: 15841866--15842328 Score: 447
Period size: 159 Copynumber: 2.9 Consensus size: 158
15841856 AACCGGACTA
* * * * *** *
15841866 AGGGTTAC-GCCAGCAGGATCGACAGCACGCAG-GAGGGA-CTGGGCTGATCCCTGGCTTACGCA
1 AGGGTTACAG-CAGCAAGATCGATAGCACGCAGAGGGGGATC-GGGCCGATCCCCAACTTGCGCA
* * *
15841928 TTCTGCCTCTCCGGTCGGCTGAGCACCCGCATGCCTGTTTCGTGGGTTGGCTTAGGCATA-GTGA
64 TTCTGCCTCTCCGATCGGCTGAGCACCCGCATG-CTCTTTCGTGGGTTGGATTAGGCATACG-GA
* *
15841992 GTTCATTCCATGTCTAAGCCCTAGTCGGACCG
127 GTTCATTCCATGTCTAAGCACTAGCCGGACCG
*** * *
15842024 AGGGTTGTGGCAGCAAGATCGGTAGCACGTAGAGGGGGATCGGGCCGATCCCCAACTTGCGCATT
1 AGGGTTACAGCAGCAAGATCGATAGCACGCAGAGGGGGATCGGGCCGATCCCCAACTTGCGCATT
* * * * * *
15842089 ATGCCTCTTCGATCGGTTCAGCACCCGAACGCTCGTTTCGTGGGTT-GACTTAGGCATACGGAGT
66 CTGCCTCTCCGATCGGCTGAGCACCCGCATGCTC-TTTCGTGGGTTGGA-TTAGGCATACGGAGT
* * *
15842153 TCATTCCCA-GTCTAAG-ATTGGACCGGATCG
129 TCATT-CCATGTCTAAGCACTAG-CCGGACCG
* * * * * *
15842183 AGGGTTACAGTAGTAGGATCGATAGCACGCAG-GGGGGATCGGGTCGGTCCCCAACTTGTGCATT
1 AGGGTTACAGCAGCAAGATCGATAGCACGCAGAGGGGGATCGGGCCGATCCCCAACTTGCGCATT
* * * * *
15842247 CTGCCTCTCCGACCGACTGAGCGCCCTCATGCTCTTATCGTGGGTTGGATTAGGCATACAGAGTT
66 CTGCCTCTCCGATCGGCTGAGCACCCGCATGCTCTT-TCGTGGGTTGGATTAGGCATACGGAGTT
15842312 CATTCCATGTCTAAGCA
130 CATTCCATGTCTAAGCA
15842329 TACGGAGTTC
Statistics
Matches: 245, Mismatches: 48, Indels: 23
0.78 0.15 0.07
Matches are distributed among these distances:
157 5 0.02
158 117 0.48
159 118 0.48
160 5 0.02
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.24
Consensus pattern (158 bp):
AGGGTTACAGCAGCAAGATCGATAGCACGCAGAGGGGGATCGGGCCGATCCCCAACTTGCGCATT
CTGCCTCTCCGATCGGCTGAGCACCCGCATGCTCTTTCGTGGGTTGGATTAGGCATACGGAGTTC
ATTCCATGTCTAAGCACTAGCCGGACCG
Found at i:15842336 original size:26 final size:26
Alignment explanation
Indices: 15842300--15842352 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15842290 GTTGGATTAG
15842300 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
15842326 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15842352 G
1 G
15842353 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15842531 original size:197 final size:196
Alignment explanation
Indices: 15842190--15842552 Score: 493
Period size: 197 Copynumber: 1.8 Consensus size: 196
15842180 TCGAGGGTTA
* * **
15842190 CAGTAGTAGGATCGATAGCACGCAGGGGGGATCGGGTCGGTCCCCAACTTGTGCATTCTGCCTCT
1 CAGTAGCAGGATCGATAGCACGCAGGGGGGATCGGGCCAATCCCCAACTTGTGCATTCTGCCTCT
* * *
15842255 CCGACCGACTGAGCGCCCTCATGCTCTTATCGTGGGTTGGATTAGGCATACAGAGTTCATTCCAT
66 CCGACCGACTGAGCGCCCGCACGCTCTTATCGTGGGTTGGATTAGGCATACAGAGTTCATCCCAT
*
15842320 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTAGGTCAATAGGA
131 ATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTAGGTCAATAGGA
15842385 C
196 C
* * * *
15842386 CAGTAGCAGGATCGGTAGCACGCAGGGGGGGATCGGGCCAATCCTCGACTTGTGCATTTTGCCTC
1 CAGTAGCAGGATCGATAGCACGCA-GGGGGGATCGGGCCAATCCCCAACTTGTGCATTCTGCCTC
* * *
15842451 TCCGACCTG-TTGAGCGCTCGCACGCTCATT-TTGTGGGTT-GACTTAGGCATA-AGGAGTTCAT
65 TCCGACC-GACTGAGCGCCCGCACGCTC-TTATCGTGGGTTGGA-TTAGGCATACA-GAGTTCAT
*
15842512 CCCCA-ATCTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
126 -CCCATATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
15842553 CCCGGTGTCA
Statistics
Matches: 145, Mismatches: 16, Indels: 11
0.84 0.09 0.06
Matches are distributed among these distances:
196 25 0.17
197 114 0.79
198 6 0.04
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (196 bp):
CAGTAGCAGGATCGATAGCACGCAGGGGGGATCGGGCCAATCCCCAACTTGTGCATTCTGCCTCT
CCGACCGACTGAGCGCCCGCACGCTCTTATCGTGGGTTGGATTAGGCATACAGAGTTCATCCCAT
ATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTAGGTCAATAGGA
C
Found at i:15842532 original size:26 final size:26
Alignment explanation
Indices: 15842494--15842547 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
15842484 TGGGTTGACT
15842494 TAGGCATAAGGAGTTCATCCCCAATC
1 TAGGCATAAGGAGTTCATCCCCAATC
* * *
15842520 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATAAGGAGTTCATCCCCAATC
15842546 TA
1 TA
15842548 AGATCCCCGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (26 bp):
TAGGCATAAGGAGTTCATCCCCAATC
Found at i:15845266 original size:24 final size:23
Alignment explanation
Indices: 15845239--15845317 Score: 88
Period size: 24 Copynumber: 3.3 Consensus size: 23
15845229 TTGTGATCTT
15845239 CTGACCACG-AGAACTCATGGTCCA
1 CTGACCACGCAG--CTCATGGTCCA
* *
15845263 CTGACTAACGTAGCTCATGGTCCA
1 CTGAC-CACGCAGCTCATGGTCCA
*
15845287 CTAACCAACGCAGCTCATGGTCCA
1 CTGACC-ACGCAGCTCATGGTCCA
15845311 CTGACCA
1 CTGACCA
15845318 TCCCGCTTGT
Statistics
Matches: 47, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
23 1 0.02
24 41 0.87
25 3 0.06
26 2 0.04
ACGTcount: A:0.28, C:0.34, G:0.19, T:0.19
Consensus pattern (23 bp):
CTGACCACGCAGCTCATGGTCCA
Found at i:15847760 original size:26 final size:26
Alignment explanation
Indices: 15847724--15847776 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15847714 GTTGGCTTAG
15847724 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15847750 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15847776 G
1 G
15847777 ATTGGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15847958 original size:26 final size:26
Alignment explanation
Indices: 15847921--15847973 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15847911 GTTGACTTAG
15847921 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
15847947 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
15847973 G
1 G
15847974 ATGAAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:15848256 original size:159 final size:158
Alignment explanation
Indices: 15847947--15848291 Score: 435
Period size: 159 Copynumber: 2.2 Consensus size: 158
15847937 CCCAGTCTAA
**** * * *
15847947 GCATACGGAGTTCATTCC-TAGTCTAAGATGAAACCAGACTGAGGGTTGCGGTAGTAGGATCGAT
1 GCATACGGAGTTCATTCCAT-GTCTAAGCCCTAGCTAGACTGAGGGTTGCGGTAGTAGGATCGAA
* * *
15848011 AGCACGCAGGGGGGACCGGGCCGATCTCTAGCTTGCGCATTCTGCCTCTTCGGCCGGTTAAGCAC
65 AGCACACAGGGGGGACCGGGCCAATCCCTAGCTTGCGCATTCTGCCTCTTCGGCCGGTTAAGCAC
*
15848076 CTGCACACCTGTTTCATGGGTTGGCTTAG
130 CCGCACACCTGTTTCATGGGTTGGCTTAG
* * *
15848105 GCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCTAGACTGAGGGTTGTGGTAGTGGGATCGAAA
1 GCATACGGAGTTCATTCCATGTCTAAGCCCTAGCTAGACTGAGGGTTGCGGTAGTAGGATCGAAA
* * * * * *
15848170 GCATACAGAGGGGGACCGGGCCAATCCCTTA-CTTGCTCATTCTGCCTTTTCGGTCGGTTGAGCC
66 GCACACAG-GGGGGACCGGGCCAATCCC-TAGCTTGCGCATTCTGCCTCTTCGGCCGGTTAAGCA
* *
15848234 CCCGTAC-GCTCGTTTCATGGGTTGGCTTAG
129 CCCGCACACCT-GTTTCATGGGTTGGCTTAG
15848264 GCATACGGAGTTCATTCCATGTCTAAGC
1 GCATACGGAGTTCATTCCATGTCTAAGC
15848292 ATACGGAGTT
Statistics
Matches: 160, Mismatches: 23, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
158 61 0.38
159 97 0.61
160 2 0.01
ACGTcount: A:0.20, C:0.24, G:0.30, T:0.26
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGCCCTAGCTAGACTGAGGGTTGCGGTAGTAGGATCGAAA
GCACACAGGGGGGACCGGGCCAATCCCTAGCTTGCGCATTCTGCCTCTTCGGCCGGTTAAGCACC
CGCACACCTGTTTCATGGGTTGGCTTAG
Found at i:15848294 original size:26 final size:26
Alignment explanation
Indices: 15848264--15848316 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15848254 GTTGGCTTAG
15848264 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCATTCTCA-GTCTAA
15848290 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
15848316 G
1 G
15848317 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAA
Found at i:15849618 original size:158 final size:157
Alignment explanation
Indices: 15849290--15849656 Score: 418
Period size: 158 Copynumber: 2.3 Consensus size: 157
15849280 GTGCCTGAAT
** *
15849290 GCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAGATTGGACCGAACTG
1 GCTCATTTCGTGGGTTG-CTTAGGCATA-AGAGTTCATT-CCATGTCTAAGATCAGACCGAACCG
* * * *
15849354 AGGGTTGCGATAGTAGGATCGACAGCACGCAGGCGGGGACCAGGCTGATCCCCGACTTGCACATT
63 AGAGTTGCGATAGAAGGATCGACAGCACGCACGCGGGGACCAGGCCGATCCCCGACTTGCACATT
* **
15849419 CTGTCTCTCCGACCGGCTGAGTGCCCACAC
128 CTGCCTCTCCGACCGGCTGAGCACCCACAC
* * *
15849449 GCTCATTTCGTGGGTTAGCTTAGACATATAGAGTTTATTCCATGTGTAAGATCAGACC-AGACCG
1 GCTCATTTCGTGGGTT-GCTTAGGCATA-AGAGTTCATTCCATGTCTAAGATCAGACCGA-ACCG
* * * ** *
15849513 AGAGTTGCGGTAGAAGGATCGATAGCATGCACG-GGGGACTGGGCCGATCCTCGACTTGCACATT
63 AGAGTTGCGATAGAAGGATCGACAGCACGCACGCGGGGACCAGGCCGATCCCCGACTTGCACATT
* * * *
15849577 CTGCCTCTCCGATCGGCTGAGCATCCGCTC
128 CTGCCTCTCCGACCGGCTGAGCACCCACAC
15849607 G-TCCATTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAG
1 GCT-CATTTCGTGGGTT-GCTTAGGCATAA-GAGTTCATTCCATGTCTAAG
15849657 CCCCAACCAG
Statistics
Matches: 175, Mismatches: 28, Indels: 11
0.82 0.13 0.05
Matches are distributed among these distances:
157 2 0.01
158 96 0.55
159 76 0.43
160 1 0.01
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.25
Consensus pattern (157 bp):
GCTCATTTCGTGGGTTGCTTAGGCATAAGAGTTCATTCCATGTCTAAGATCAGACCGAACCGAGA
GTTGCGATAGAAGGATCGACAGCACGCACGCGGGGACCAGGCCGATCCCCGACTTGCACATTCTG
CCTCTCCGACCGGCTGAGCACCCACAC
Found at i:15849698 original size:158 final size:159
Alignment explanation
Indices: 15849055--15849817 Score: 498
Period size: 159 Copynumber: 4.8 Consensus size: 159
15849045 GATAGCAGGG
* * * * * * *
15849055 TCGACAGCACGCAG-GGGGGATCGGGCCAATCCCCAGCTTGCATATTCTGCCTCT-CTAGCTGGC
1 TCGACAGCATGCAGAGGGGGACCGGGCCGATCCCGA-CTTGCACATTCTGCCTCTCCGATC-GGC
* * * * * * * * *
15849118 TGAGCGCCCGCACGCCCATTTCATGAGTTGGCTTAGGCATAGGGAGCTCATTCAATGTCTAAGCC
64 TGAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAAGGAGTTTATTCCATGTCTAAGCA
* * * **
15849183 CCAG--CAGGACCGAGGGTTGTGGTAGCGGGA
129 CCAGACCA-GACCGAGAGTTGCGGCAGAAGGA
* * * * * * * * * * * * * *
15849213 -CCAGCAGCACGTAGAGGGGGACTGAGCCAATCCTTGGCTTACGCATTATACCTCTCCGGTTGGC
1 TCGA-CAGCATGCAGAGGGGGACCGGGCCGATCC-CGACTTGCACATTCTGCCTCTCCGATCGGC
* ** * * * * *
15849277 TCAGTGCCTGAATGCTCATTTCGTGGGTTGACTTAGGCATACA-GAGTTCATTCCCA-GTCTAAG
64 TGAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATA-AGGAGTTTATT-CCATGTCTAAG
*** * * ** *
15849340 -ATTGGACC-GAACTGAGGGTTGCGATAGTAGGA
127 CACCAGACCAG-ACCGAGAGTTGCGGCAGAAGGA
* * * * *
15849372 TCGACAGCACGCAG-GCGGGGACCAGGCTGATCCCCGACTTGCACATTCTGTCTCTCCGACCGGC
1 TCGACAGCATGCAGAG-GGGGACCGGGCCGAT-CCCGACTTGCACATTCTGCCTCTCCGATCGGC
** * * * *
15849436 TGAGTGCCCACACGCTCATTTCGTGGGTTAGCTTAGACATATA-GAGTTTATTCCATGTGTAAG-
64 TGAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATA-AGGAGTTTATTCCATGTCTAAGC
* *
15849499 ATCAGACCAGACCGAGAGTTGCGGTAGAAGGA
128 ACCAGACCAGACCGAGAGTTGCGGCAGAAGGA
* * *
15849531 TCGATAGCATGCA-CGGGGGACTGGGCCGATCCTCGACTTGCACATTCTGCCTCTCCGATCGGCT
1 TCGACAGCATGCAGAGGGGGACCGGGCCGATCC-CGACTTGCACATTCTGCCTCTCCGATCGGCT
* * * *
15849595 GAGCATCCGCTCG-TCCATTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCC
65 GAGCACCCGCACGCT-CATTTCGTGGGTTGGCTTAGGCATAAGGAGTTTATTCCATGTCTAAGCA
* * * *
15849659 CCA-ACCAGACTGAGGGTTGTGGCA-ACGCGA
129 CCAGACCAGACCGAGAGTTGCGGCAGAAG-GA
* * * * * ** *
15849689 -CTGGCAGCATGCAGAGGGGGACCGGGTCGATCCCCAGCTTACACATTCTACCTCTTTGATCGGT
1 TC-GACAGCATGCAGAGGGGGACCGGGCCGATCCCGA-CTTGCACATTCTGCCTCTCCGATCGGC
* *
15849753 TGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGCA
64 TGAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAAGGAGTTTATTCCATGTCTAAGCA
15849818 TACGGTGTTC
Statistics
Matches: 469, Mismatches: 112, Indels: 47
0.75 0.18 0.07
Matches are distributed among these distances:
157 9 0.02
158 135 0.29
159 315 0.67
160 10 0.02
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (159 bp):
TCGACAGCATGCAGAGGGGGACCGGGCCGATCCCGACTTGCACATTCTGCCTCTCCGATCGGCTG
AGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAAGGAGTTTATTCCATGTCTAAGCACC
AGACCAGACCGAGAGTTGCGGCAGAAGGA
Found at i:15850420 original size:26 final size:26
Alignment explanation
Indices: 15850391--15850443 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15850381 GTTGGCTTAG
15850391 GCATACAAAGTTCATT-CCATGTCTAA
1 GCATACAAAGTTCATTCCCA-GTCTAA
**
15850417 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
15850443 G
1 G
15850444 ATTAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:15850631 original size:26 final size:26
Alignment explanation
Indices: 15850601--15850652 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15850591 TTGACTTAGT
* *
15850601 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACAGAGTTCATCCCCAATCTAAG
*
15850627 CATACAGAGTTCATTCCCAATCTAAG
1 CATACAGAGTTCATCCCCAATCTAAG
15850653 ATAGGACCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (26 bp):
CATACAGAGTTCATCCCCAATCTAAG
Found at i:15850822 original size:26 final size:26
Alignment explanation
Indices: 15850786--15850838 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15850776 GTTGGCTTAG
15850786 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15850812 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15850838 G
1 G
15850839 ATCAGACTAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15850976 original size:395 final size:389
Alignment explanation
Indices: 15850233--15851075 Score: 1021
Period size: 395 Copynumber: 2.2 Consensus size: 389
15850223 GTTGACTTAG
* * * *
15850233 GCATACAGAGTTTATTCCCAATCTTAGATCGGATCAGACCGAGGGTTACGGTAGCAGGATTGACA
1 GCATACAGAGTTCATTCCCAATCTAAGATAGGATCAGACCGAGGGTTACGGTAGCAGGATCGACA
** * * * *
15850298 GCACGTAGGGGGGACCGAGCCGATCCTTGGCTTACGCATTCTACCTCTTTGGCCGACTGAGCGCC
66 GCACGTAGGGGGGACCGAGCCGATCCCCGGCTTACGCATTCTACCTCTTCGACCGACTGAACACC
* *
15850363 CGCATGCTCGTTCCGTGGGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGCATACGGAGT
131 AGCACGCTCGTTCCGTGGGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGCATACGGAGT
* * * * * *
15850428 TCATTCCCAGTCTAAGATTAGATCGGACCGAGGGTTACGAAAGTAGGACTAGCAGCAGGATTGGC
196 TCATTCCCAGTCTAAGATCAGATCAGACCAAGGGTTACGAAAGCAGGACCAGCAGCAGGATCGGC
* * * * * * *
15850493 AACACACAGGGGGGATCGGGCTGATCCCTGGCTTGCACATTTTGCCTCTCCGACTGGCCCCTCCG
261 AACACACAAGGGGGACCGGGCCGATCCCTAGCTTGCACATTCTACCTCTCCGACCGGCCCCTCCG
* * * * * *
15850558 ATCGGCTGAGTGCCCTCACGCTTGTTTCATGAGTTGACTTAGTCATACGGAGTTCATCCCCAGTC
326 ATCAGCTGAGAGACCTCACGCTTG--T--TGAGTTAACTTAGGCATACGAAGTTCATCCCCAGTC
15850623 TAA
387 TAA
* * *
15850626 GCATACAGAGTTCATTCCCAATCTAAGATAGGACCAGACCGAAGGTTACGGTAGCAGGATCGATA
1 GCATACAGAGTTCATTCCCAATCTAAGATAGGATCAGACCGAGGGTTACGGTAGCAGGATCGACA
* *
15850691 GCACGTAAGGGGGGAACC-AGGTCGATCCCCGGCTTACGCATTCTGCCTCTTCGACCGACTGAAC
66 GCACGT-AGGGGGG-ACCGA-GCCGATCCCCGGCTTACGCATTCTACCTCTTCGACCGACTGAAC
* * **
15850755 ACCAGCACGCTCTTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGG
128 ACCAGCACGCTCGTTCCGTGGGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGCATACGG
* * *
15850820 AGTTCATTCCCAGTCTAAGATCAGA-CTAGACCAAGGGTTGCGACAGCAGGACCAGTAGCAGGAT
193 AGTTCATTCCCAGTCTAAGATCAGATC-AGACCAAGGGTTACGAAAGCAGGACCAGCAGCAGGAT
* ** * ** *
15850884 CGGCAGCACACAAGGGGGACCGGGCCGAT-CCTCAGCTTGTGCATTCTACCTTTTTGACCGGCCT
257 CGGCAACACACAAGGGGGACCGGGCCGATCCCT-AGCTTGCACATTCTACCTCTCCGACCGGCCC
* * *
15850948 CTCCGATCAGTTGA-AGACCTGTACGCTTGTTGGGTTAACTTAGGCATACGAAGTTCATCCCCAG
321 CTCCGATCAGCTGAGAGACCT-CACGCTTGTTGAGTTAACTTAGGCATACGAAGTTCATCCCCAG
*
15851012 TTTAA
385 TCTAA
* * * * *
15851017 GCATACGGAGTTCATTCCTAGTCTAAGATCA-GATCGGACCGAGGGTTACGGTTGCAGGA
1 GCATACAGAGTTCATTCCCAATCTAAGAT-AGGATCAGACCGAGGGTTACGGTAGCAGGA
15851076 CCAGTAGTAG
Statistics
Matches: 382, Mismatches: 61, Indels: 16
0.83 0.13 0.03
Matches are distributed among these distances:
391 84 0.22
392 1 0.00
393 65 0.17
394 16 0.04
395 216 0.57
ACGTcount: A:0.23, C:0.26, G:0.27, T:0.24
Consensus pattern (389 bp):
GCATACAGAGTTCATTCCCAATCTAAGATAGGATCAGACCGAGGGTTACGGTAGCAGGATCGACA
GCACGTAGGGGGGACCGAGCCGATCCCCGGCTTACGCATTCTACCTCTTCGACCGACTGAACACC
AGCACGCTCGTTCCGTGGGTTGGCTTAGGCATACAAAGTTCATTCCATGTCTAAGCATACGGAGT
TCATTCCCAGTCTAAGATCAGATCAGACCAAGGGTTACGAAAGCAGGACCAGCAGCAGGATCGGC
AACACACAAGGGGGACCGGGCCGATCCCTAGCTTGCACATTCTACCTCTCCGACCGGCCCCTCCG
ATCAGCTGAGAGACCTCACGCTTGTTGAGTTAACTTAGGCATACGAAGTTCATCCCCAGTCTAA
Found at i:15851027 original size:205 final size:205
Alignment explanation
Indices: 15850781--15851266 Score: 575
Period size: 205 Copynumber: 2.4 Consensus size: 205
15850771 CGTGGGTTGG
*
15850781 CTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
1 CTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * *
15850845 -CTAGACCAAGGGTTGCGACAGCAGGACCAGTAGCAGGATCGGCAGCACACAAGGGGGACCGGGC
65 TC-AGACCAAGGGTTACGACAGCAGGACCAGTAGCAGGATCGGCAGCACACAAGGAGGACCGAGC
* * ** * ** * *
15850909 CGATCCTCAGCTTGTGCATTCTACCTTTTTGACCGGCCTCTCCGATC-AGTTGAAG-ACCTGTAC
129 CAATCCCCAGCTTGCACATTCTACCTCTCCGACCGGCCTCTCCGATCGA-CT-AAGTACCCGTAC
**
15850972 GCTTGTTGGGTTAA
192 GCACGTTGGGTTAA
* * *
15850986 CTTAGGCATACGAAGTTCATCCCCAGTTTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGAT
1 CTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAT
* * *** * * ** * *
15851051 CGGACCGAGGGTTACGGTTGCAGGACCAGTAGTAGGATCGGTAGCACGTAAGGAGGATCGAGCTA
66 CAGACCAAGGGTTACGACAGCAGGACCAGTAGCAGGATCGGCAGCACACAAGGAGGACCGAGCCA
* * * *
15851116 ATCCCCGGCTTGCACATTCTGCCTCTCCGACCGGCCTCTTCGATCGACTAAGTACCCGTATGCAC
131 ATCCCCAGCTTGCACATTCTACCTCTCCGACCGGCCTCTCCGATCGACTAAGTACCCGTACGCAC
15851181 GTTGGGTTAA
196 GTTGGGTTAA
* *
15851191 CTTAGGCTTACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGAT
1 CTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAT
* *
15851256 CGGACCGAGGG
66 CAGACCAAGGG
15851267 ATGCAGCAGT
Statistics
Matches: 239, Mismatches: 38, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
204 3 0.01
205 231 0.97
206 5 0.02
ACGTcount: A:0.24, C:0.26, G:0.26, T:0.24
Consensus pattern (205 bp):
CTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAT
CAGACCAAGGGTTACGACAGCAGGACCAGTAGCAGGATCGGCAGCACACAAGGAGGACCGAGCCA
ATCCCCAGCTTGCACATTCTACCTCTCCGACCGGCCTCTCCGATCGACTAAGTACCCGTACGCAC
GTTGGGTTAA
Found at i:15851043 original size:26 final size:26
Alignment explanation
Indices: 15850991--15851043 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15850981 GTTAACTTAG
*
15850991 GCATACGAAGTTCATCCCCAGTTTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
15851017 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
15851043 G
1 G
15851044 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:15851235 original size:26 final size:26
Alignment explanation
Indices: 15851199--15851248 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
15851189 AACTTAGGCT
*
15851199 TACGGAGTTCATCCCCAGTCTAAGCA
1 TACGGAGTTCATCCCCAATCTAAGCA
*
15851225 TACGGAGTTCATTCCCAATCTAAG
1 TACGGAGTTCATCCCCAATCTAAG
15851249 ATCAGATCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAATCTAAGCA
Found at i:15851589 original size:26 final size:26
Alignment explanation
Indices: 15851539--15851591 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15851529 GTTGGCTTAG
* *
15851539 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATATCTAA
15851565 GCATACGAAGTTCATTCCCA-ATCTAA
1 GCATACGAAGTTCATT-CCATATCTAA
15851591 G
1 G
15851592 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATATCTAA
Found at i:15852066 original size:26 final size:26
Alignment explanation
Indices: 15852030--15852080 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15852020 GTTGGCTTAG
15852030 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCATTCACA-GTCTAA
15852056 GCATACGGAGTTCATTCACAGTCTA
1 GCATACGGAGTTCATTCACAGTCTA
15852081 GGATCGGACT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:15852254 original size:26 final size:26
Alignment explanation
Indices: 15852225--15852278 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
15852215 GGTTGACTTC
15852225 AGCATACAAAGTTCA-TTCCATGTCTA
1 AGCATACAAAGTTCATTTCCA-GTCTA
**
15852251 AGCATACGGAGTTCATTTCCAGTCTA
1 AGCATACAAAGTTCATTTCCAGTCTA
15852277 AG
1 AG
15852279 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.30
Consensus pattern (26 bp):
AGCATACAAAGTTCATTTCCAGTCTA
Found at i:15853386 original size:184 final size:183
Alignment explanation
Indices: 15853068--15853497 Score: 513
Period size: 184 Copynumber: 2.3 Consensus size: 183
15853058 TGGGTTGACT
* * * *
15853068 TAGGCATAAGGAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGTAGGATCA
1 TAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCA
* * * * *
15853133 ACAACACACAGGAGGGATCGGACCGGTCCCTGGCTTGCGCATTCTGCTTATCTGGTCGGCTGAGC
66 ACAACACACAGGAGGGAACGGACCGGTCCCTGGCTTGCGCATTCTACCTATCCGGCCGGCTGAGC
* *
15853198 GCCCGCATAC-TCGTTTCGTTGGTTGGCCTAGGCATAAGGATTTCATTCCATGTC
131 GCCCG--TACGTCGTTTCGTGGGTTGGCCTAGGCATAAGGAGTTCATTCCATGTC
* * * *
15853252 TTGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCAAGGGTTGCAGCAGCAGTATCG
1 TAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCA
* * * * ** *
15853317 ATAGCACGCAGGGGGGAACGGGTCGGTGCCC-GGCTTGCGCATTCTACCTCTCCGGCCGGCTGAG
66 ACAACACACAGGAGGGAACGGACCGGT-CCCTGGCTTGCGCATTCTACCTATCCGGCCGGCTGAG
* *
15853381 CGCCCGTACGTTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTC
130 CGCCCGTACG-TCGTTTCGTGGGTTGGCCTAGGCATAAGGAGTTCATTCCATGTC
* * * * * ** * *
15853436 TAAGCATACGGAGTTCATTCCCAATCTATGATCAAACTAGACCGAGGGTTGCAACTGCAGGA
1 TAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGA
15853498 CCAGTAGCAG
Statistics
Matches: 207, Mismatches: 36, Indels: 6
0.83 0.14 0.02
Matches are distributed among these distances:
182 3 0.01
184 201 0.97
185 3 0.01
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.24
Consensus pattern (183 bp):
TAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGATCA
ACAACACACAGGAGGGAACGGACCGGTCCCTGGCTTGCGCATTCTACCTATCCGGCCGGCTGAGC
GCCCGTACGTCGTTTCGTGGGTTGGCCTAGGCATAAGGAGTTCATTCCATGTC
Found at i:15853680 original size:197 final size:196
Alignment explanation
Indices: 15853319--15853683 Score: 480
Period size: 197 Copynumber: 1.9 Consensus size: 196
15853309 CAGTATCGAT
* * * * * *
15853319 AGCACGCAGGGGGGAACGGGTCGGTGCCCGGCTTGCGCATTCTACCTCTCCGGCCGGCTGAGCGC
1 AGCACGCAGGGGGGAACGGGCCGATCCCCGGCTTACGCATTCTACCTCTCCAGCCGGCTGAGCAC
* * * * * * * *
15853384 CCGTACGTTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCATACGGAG
66 CCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAAGAAAAAGGAG
* *
15853449 TTCATTCCCAATCTATGATCAAACTAGACCGAGGGTTGCAACTGCAGGACCAGTAGCAGGATCAG
131 TTCATTCCCAATCGAAGATCAAACTAGACCGAGGGTTGCAACTGCAGGACCAGTAGCAGGATCAG
15853514 C
196 C
* * * *
15853515 AGCACGCAGGAGGGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCTAGCCGGCTGAGTA
1 AGCACGCAGG-GGGGAACGGGCCGATCCCCGGCTTACGCATTCTACCTCTCCAGCCGGCTGAGCA
* *
15853580 CCTGTATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGAAAAAGG
65 CCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT-CCCATGTCTAAGAAAAAGG
** *
15853644 AGTTCATTCCCAATCGAAGATCCGACTGGACCGAGGGTTG
129 AGTTCATTCCCAATCGAAGATCAAACTAGACCGAGGGTTG
15853684 TGACAGCAGG
Statistics
Matches: 142, Mismatches: 25, Indels: 3
0.84 0.15 0.02
Matches are distributed among these distances:
196 10 0.07
197 129 0.91
198 3 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (196 bp):
AGCACGCAGGGGGGAACGGGCCGATCCCCGGCTTACGCATTCTACCTCTCCAGCCGGCTGAGCAC
CCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAAGAAAAAGGAG
TTCATTCCCAATCGAAGATCAAACTAGACCGAGGGTTGCAACTGCAGGACCAGTAGCAGGATCAG
C
Found at i:15854335 original size:26 final size:26
Alignment explanation
Indices: 15854298--15854350 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15854288 GTTGACTTAG
15854298 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
15854324 GCATAC-AGAGTTTATTCCCAGTCTAA
1 GCATACGA-AGTTCATCCCCAGTCTAA
15854350 G
1 G
15854351 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:15855024 original size:26 final size:26
Alignment explanation
Indices: 15854995--15855047 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15854985 GTTGACTTAG
15854995 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
15855021 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15855047 G
1 G
15855048 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15855214 original size:26 final size:26
Alignment explanation
Indices: 15855178--15855230 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15855168 GTTGACTTAG
15855178 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
15855204 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
15855230 G
1 G
15855231 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:15855250 original size:183 final size:184
Alignment explanation
Indices: 15854889--15855415 Score: 618
Period size: 183 Copynumber: 2.9 Consensus size: 184
15854879 TAGGACCAGC
** * * * * *
15854889 AGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCCCGGCTTGCACATTCTGCCTCTCCAA
1 AGCAGGATCGGTAGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTAG
** * *
15854954 CCGGCTGAATGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCT
66 CCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCT
* * *
15855019 AAGCATATGGAGTTCATTCCCAGTCTAAGATTGGATCGGACTGAGGGTTACGACT
131 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACG-CT
* * **
15855074 -GCAGGATCGGTAGCATGTA-GGGGGATCGGGCCGATCGTCGGCTTGCGCATTCTGCCTCTCTAG
1 AGCAGGATCGGTAGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTAG
* * *
15855137 CCAGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCT
66 CCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCT
* * * *
15855202 AAGCATACGAAGTTCATTCCTAGTCTAAGATCGGA-CTGGACCGAGGGTTGCGGT
131 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-GGACCGAGGGTTACGCT
* ** * *
15855256 AGTAGGATCGGTAGCACGCAGGGGGGATCGGGCCGATCCCCAACTTGTGCATTCTACCTCT-TCA
1 AGCAGGATCGGTAGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCT-A
* * * * * *
15855320 GTCGGCTGAGCGCCCGCATGCTCATTTCATAGGTTGGCTTAGGCATAC-AGAGTTCAT-TCCATG
65 GCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGA-AGTTCATCCCCA-G
*
15855383 TCTGAGCAT-CTGGAGTTCATTCCCAGTCTAAGA
128 TCTAAGCATAC-GGAGTTCATTCCCAGTCTAAGA
15855416 GTTTGAGCCA
Statistics
Matches: 289, Mismatches: 46, Indels: 15
0.83 0.13 0.04
Matches are distributed among these distances:
182 2 0.01
183 161 0.56
184 126 0.44
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.24
Consensus pattern (184 bp):
AGCAGGATCGGTAGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCTAG
CCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCT
AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGCT
Found at i:15856511 original size:158 final size:157
Alignment explanation
Indices: 15856088--15856551 Score: 506
Period size: 159 Copynumber: 2.9 Consensus size: 157
15856078 GACCCGGATC
* *
15856088 GAGGGTTGCGGTAGTAGGATCGACAGCACGTAGGGGGGGATCGGGTCGAT-CCTCGGCTTGCCCA
1 GAGGGTTGCGGTAGTAGGATCGACAGCACGTA-GGGGGGACCGGG-CGATCCCT-GGCTTGCGCA
* * * * *
15856152 TTCTGCCTCTCCGGCCGGCTGA-CTGCTCGCACGCACGTTTCGTGGGTTGGCTTAGGCATAGGGA
63 TTCTGCCTCTCCGGCCGGCTGAGCT-CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAA
15856216 GTTCATTCCATGTCTAAGCCCCAGCTGGACT
127 GTTCATTCCATGTCTAAGCCCCAGCTGGACT
* * * ** *
15856247 GAGGGTTGTGGTAGCAGGACCGACAGCACACAGAGGGGGACCGAGCTGATCCCTGGCTTGCGCAT
1 GAGGGTTGCGGTAGTAGGATCGACAGCACGTAG-GGGGGACCGGGC-GATCCCTGGCTTGCGCAT
* * * * * * * *
15856312 TATGCCTCTTCGGCAGGCTCAGCGCCTGCACGCTCGTTTCATGGGTTGACTTAGCCATACGAAGT
64 TCTGCCTCTCCGGCCGGCTGAGCTCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGT
* **
15856377 TCATTCCCA-GTTTAAG-GTCAGACCT-GACT
129 TCATT-CCATGTCTAAGCCCCAG--CTGGACT
* * * *
15856406 GAGGGTTGCGGCAGTAGGATCGACAGCACGTAGGGGGGACCGGGCCAGTCCCTGACTTACGCATT
1 GAGGGTTGCGGTAGTAGGATCGACAGCACGTAGGGGGGACCGGGCGA-TCCCTGGCTTGCGCATT
* * * **
15856471 CTGCCTCTCCAGCCGGCTGAGCTCCCGCACGCTCGTTTCATGGCTTGGCTTAGGCATATGGCGTT
65 CTGCCTCTCCGGCCGGCTGAGCTCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTT
15856536 CATTCCATGTCTAAGC
130 CATTCCATGTCTAAGC
15856552 ATACGGAGTT
Statistics
Matches: 247, Mismatches: 48, Indels: 20
0.78 0.15 0.06
Matches are distributed among these distances:
157 4 0.02
158 93 0.38
159 141 0.57
160 9 0.04
ACGTcount: A:0.17, C:0.28, G:0.31, T:0.23
Consensus pattern (157 bp):
GAGGGTTGCGGTAGTAGGATCGACAGCACGTAGGGGGGACCGGGCGATCCCTGGCTTGCGCATTC
TGCCTCTCCGGCCGGCTGAGCTCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTC
ATTCCATGTCTAAGCCCCAGCTGGACT
Found at i:15858362 original size:26 final size:26
Alignment explanation
Indices: 15858332--15858384 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15858322 GTTGACTTAG
*
15858332 GCATACGGAGTTCA-TCCTCAATCTAA
1 GCATACGAAGTTCATTCC-CAATCTAA
15858358 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
15858384 G
1 G
15858385 ATTGAACCTG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:15858710 original size:147 final size:146
Alignment explanation
Indices: 15858422--15858685 Score: 354
Period size: 147 Copynumber: 1.8 Consensus size: 146
15858412 CAGGATCGGT
* * * * *
15858422 AGCACGCAGAGGGGATCGGGCCGATCCCTGGCTTGCCCATTCTGCCTCTCCGGCTGGCTGAGCAC
1 AGCACGCAGAGGGGATCGGGCCGATCCCTGGCTTGCCCATTATGCCTCTCCGGCCGACTCAACAC
* * * * * *
15858487 CCATACGCCGGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCCAAGCCCTAGCCG
66 CCATACGCCGATTTCCTGGGTTGACTTAGGCATACGGAGTTCATTCCAAGTCCAAGACCTAGCCG
15858552 AAACGAGGGTTGTGGC
131 AAACGAGGGTTGTGGC
* *
15858568 AGCACGCAGAGGGGGA-CTGGGCCGATCCTTGGCTTGCGCATTATGCCTCTCCGGCCGACTCAAC
1 AGCACGCAGA-GGGGATC-GGGCCGATCCCTGGCTTGCCCATTATGCCTCTCCGGCCGACTCAAC
15858632 ACCCGAT-CGCTC-ATTTCCTGGGTTGACTTAGGCATACGGAGTTCATTCCAAGTC
64 ACCC-ATACGC-CGATTTCCTGGGTTGACTTAGGCATACGGAGTTCATTCCAAGTC
15858686 TATGATCAGA
Statistics
Matches: 102, Mismatches: 12, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
146 11 0.11
147 88 0.86
148 3 0.03
ACGTcount: A:0.17, C:0.30, G:0.30, T:0.23
Consensus pattern (146 bp):
AGCACGCAGAGGGGATCGGGCCGATCCCTGGCTTGCCCATTATGCCTCTCCGGCCGACTCAACAC
CCATACGCCGATTTCCTGGGTTGACTTAGGCATACGGAGTTCATTCCAAGTCCAAGACCTAGCCG
AAACGAGGGTTGTGGC
Found at i:15858857 original size:26 final size:26
Alignment explanation
Indices: 15858821--15858873 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15858811 GTTGGCTTAG
15858821 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
15858847 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15858873 G
1 G
15858874 ATTAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15858983 original size:184 final size:184
Alignment explanation
Indices: 15858663--15859032 Score: 474
Period size: 184 Copynumber: 2.0 Consensus size: 184
15858653 GTTGACTTAG
* * **
15858663 GCATACGGAGTTCATTCCAAGTCTATGATCAGATCAGACTGAGGGTTGCGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCAAGTCTAAGATCAGACCAGACCAAGGGTTGCGACAGCAGGATCGACA
** * * * * * *
15858728 GCACGTAGGGGGGATCGGGCCGATCCCCGGCTTGTGCATTCTACCTTTTCGATAGGTTGAGCGCT
66 GCACACAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACAGGCTGAGCGCC
* *
15858793 CGCACACTCATTTCTTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
131 CGCACACCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
* * * * * * *
15858847 GCATATGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCAAGGGTTGTGGCAGTAGGATC-AGT
1 GCATACGGAGTTCATTCCAAGTCTAAGATCAGACCAGACCAAGGGTTGCGACAGCAGGATCGA-C
*
15858911 AGCACACAGGGGGGA-CTGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCG
65 AGCACACAGGGGGGATC-GGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACAGGCTGAGCG
* * * *
15858975 CCCGCACACCCGTTTCATGGTTTGGCTTAGGCATAGGGAGTTCATTCCATGTTTAA
129 CCCGCACACCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
15859031 GC
1 GC
15859033 CCCCAATCAG
Statistics
Matches: 158, Mismatches: 26, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
183 2 0.01
184 156 0.99
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.25
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCAAGTCTAAGATCAGACCAGACCAAGGGTTGCGACAGCAGGATCGACA
GCACACAGGGGGGATCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACAGGCTGAGCGCC
CGCACACCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:15859181 original size:344 final size:343
Alignment explanation
Indices: 15858568--15859218 Score: 853
Period size: 344 Copynumber: 1.9 Consensus size: 343
15858558 GGGTTGTGGC
* ** * *
15858568 AGCACGCAGAGGGGGACTGGGCCGATCCTTGGCTTGCGCATTATGCCTCTCCGGCCGACTCAACA
1 AGCACACAGAGGGGGACTGGGCCGATCCCCGGCTTGCGCATTATACCTCTCCGACCGACTCAACA
* * * * *
15858633 CCCGATCGCTCATTTCCTGGGTTGACTTAGGCATACGGAGTTCATTCCAAGTCTATGATCAGATC
66 CCCGATCACCCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAAGTCTAAGACCAGATC
*
15858698 AGACTGAGGGTTGCGACAGCAGGATCGACAGCACGTAGGGGGGATCGGGCCGATCCCCGGCTTGT
131 AGACTGAGGGTTGCGACAACAGGATCGACAGCACGTAGGGGGGATCGGGCCGATCCCCGGCTTGT
* * * *
15858763 GCATTCTACCTTTTCGATAGGTTGAGCGCTCGCACACTCATTTCTTGGGTTGGCTTAGGCATACG
196 GCATTCTACCTCTCCGATAGGCTGAGCGCTCGCACACTCATTTCGTGGGTTGGCTTAGGCATACG
* *
15858828 GAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCAAGGGT
261 GAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATTAGACCAGACCAAGGGT
15858893 TGTGGCAGTAGGATCAGT
326 TGTGGCAGTAGGATCAGT
* * * * *
15858911 AGCACACAG-GGGGGACTGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCG
1 AGCACACAGAGGGGGACTGGGCCGATCCCCGGCTTGCGCATTATACCTCTCCGACCGACTCAACA
* * * * * * *
15858975 CCCGCA-CACCCGTTTCATGGTTTGGCTTAGGCATAGGGAGTTCATTCCATGTTTAAGCCCCCA-
66 CCCG-ATCACCCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAAGTCTAAG--ACCAG
* ** * * **
15859038 ATCAGA-TCGAGGGTTGTGGTAACAGGATCGGCAGCACGTAGAGGGGGATCGGGCCTATCGTCGG
128 ATCAGACT-GAGGGTTGCGACAACAGGATCGACAGCACGTAG-GGGGGATCGGGCCGATCCCCGG
* * *
15859102 CTTGTGCATTCTACCTCTCCGATCGGCTGAGCG-TCCGCACGCTCGTTTCGTGGGTTGGCTTAGG
191 CTTGTGCATTCTACCTCTCCGATAGGCTGAGCGCT-CGCACACTCATTTCGTGGGTTGGCTTAGG
*
15859166 CATTCGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGA
255 CATACGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGA
15859219 GTTTGAGCCA
Statistics
Matches: 262, Mismatches: 40, Indels: 11
0.84 0.13 0.04
Matches are distributed among these distances:
342 92 0.35
343 44 0.17
344 126 0.48
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (343 bp):
AGCACACAGAGGGGGACTGGGCCGATCCCCGGCTTGCGCATTATACCTCTCCGACCGACTCAACA
CCCGATCACCCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAAGTCTAAGACCAGATC
AGACTGAGGGTTGCGACAACAGGATCGACAGCACGTAGGGGGGATCGGGCCGATCCCCGGCTTGT
GCATTCTACCTCTCCGATAGGCTGAGCGCTCGCACACTCATTTCGTGGGTTGGCTTAGGCATACG
GAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATTAGACCAGACCAAGGGT
TGTGGCAGTAGGATCAGT
Found at i:15859913 original size:26 final size:26
Alignment explanation
Indices: 15859877--15859928 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
15859867 GTTGACTTAG
15859877 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
*
15859903 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
15859929 TATTGGATAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:15860246 original size:26 final size:26
Alignment explanation
Indices: 15860210--15860259 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
15860200 GGCTTAGGCT
15860210 TACGGAGTTCATTCC-ATGTCTAAGCA
1 TACGGAGTTCATTCCTA-GTCTAAGCA
15860236 TACGGAGTTCATTCCTAGTCTAAG
1 TACGGAGTTCATTCCTAGTCTAAG
15860260 AGTTTGAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.32
Consensus pattern (26 bp):
TACGGAGTTCATTCCTAGTCTAAGCA
Found at i:15860967 original size:26 final size:25
Alignment explanation
Indices: 15860938--15861034 Score: 113
Period size: 26 Copynumber: 3.8 Consensus size: 25
15860928 AGATATACGG
15860938 AGTTCATCCCCAGTATAAGCATACA
1 AGTTCATCCCCAGTATAAGCATACA
* *
15860963 TAGTTCATTCCCAGTATAAGCATACGG
1 -AGTTCATCCCCAGTATAAGCATAC-A
* *
15860990 AGTTCATCCCTAGTATAAGTATACGA
1 AGTTCATCCCCAGTATAAGCATAC-A
* *
15861016 AGTTCATTCCCAGTCTAAG
1 AGTTCATCCCCAGTATAAG
15861035 ATCAGACTGG
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
26 61 1.00
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29
Consensus pattern (25 bp):
AGTTCATCCCCAGTATAAGCATACA
Found at i:15860994 original size:52 final size:52
Alignment explanation
Indices: 15860932--15861034 Score: 163
Period size: 52 Copynumber: 2.0 Consensus size: 52
15860922 TCACTTAGAT
15860932 ATACGGAGTTCATCCCCAGTATAAGCATAC-ATAGTTCATTCCCAGTATAAGC
1 ATACGGAGTTCATCCCCAGTATAAGCATACGA-AGTTCATTCCCAGTATAAGC
* * *
15860984 ATACGGAGTTCATCCCTAGTATAAGTATACGAAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATCCCCAGTATAAGCATACGAAGTTCATTCCCAGTATAAG
15861035 ATCAGACTGG
Statistics
Matches: 47, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
52 46 0.98
53 1 0.02
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (52 bp):
ATACGGAGTTCATCCCCAGTATAAGCATACGAAGTTCATTCCCAGTATAAGC
Found at i:15861361 original size:26 final size:26
Alignment explanation
Indices: 15861327--15861377 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15861317 GAGCTTAGGA
15861327 ATATAGAGTTCATT-CCATGTCTAAGC
1 ATATAGAGTTCATTCCCA-GTCTAAGC
*
15861353 ATATGGAGTTCATTCCCAGTCTAAG
1 ATATAGAGTTCATTCCCAGTCTAAG
15861378 AGTTTGAGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (26 bp):
ATATAGAGTTCATTCCCAGTCTAAGC
Found at i:15862040 original size:26 final size:26
Alignment explanation
Indices: 15862011--15862063 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15862001 GTTGGCTTTG
15862011 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15862037 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15862063 G
1 G
15862064 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15862570 original size:159 final size:157
Alignment explanation
Indices: 15862189--15862697 Score: 478
Period size: 159 Copynumber: 3.2 Consensus size: 157
15862179 CGCACACTTG
* *
15862189 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTT
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGA-CGAGGGTT
* ** * ** *
15862254 ACGACAATAGGATCGACAACACGCAGA-GGGGACCGAGTCGATCCCTGGCTTGCGCATTCTGCCT
65 ACGGCAGCAGGATCGACAGCACGCAGAGGGGGAATGAGCCGATCCCTGGCTTGCGCATTCTGCCT
* * * * *
15862318 CTCCGGTCGGCTGAGCACCCACATGCCCA
130 CTCCGGTCGGCTAAGCATCGA-ACGCTCA
* * * ** * *
15862347 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGCCAGACTGAGGG
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCGGA-TCGGAC-GAGGG
** * * * *
15862410 TTGTGGCAGCGGGATCGGCAGCACGCAGAGGGGGAATGGGCCGAT-CCTCGGCTTGCGCATTATG
63 TTACGGCAGCAGGATCGACAGCACGCAGAGGGGGAATGAGCCGATCCCT-GGCTTGCGCATTCTG
* *
15862474 CGTCTCCGGTCGACTCAATGC-TCGAACGCTCA
127 CCTCTCCGGTCGGCT-AA-GCATCGAACGCTCA
*
15862506 TTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACGAAGGGTT
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACG-AGGGTT
* * * * * *
15862571 ACAGCAGCAGGATCGATAGCACGC--AGGGGG-ATCAGCCGATCCCTGACTAGTGCATTCTGCCT
65 ACGGCAGCAGGATCGACAGCACGCAGAGGGGGAATGAGCCGATCCCTGGCTTGCGCATTCTGCCT
* * * * *
15862633 CTTCGATCGGCTGAACGCGT-GCACGCTCG
130 CTCCGGTCGGCT-AA-GCATCGAACGCTCA
*
15862662 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCC
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
15862698 ATCTCTAAGC
Statistics
Matches: 280, Mismatches: 59, Indels: 26
0.77 0.16 0.07
Matches are distributed among these distances:
156 75 0.27
157 15 0.05
158 71 0.25
159 109 0.39
160 8 0.03
161 2 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (157 bp):
TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACGAGGGTTA
CGGCAGCAGGATCGACAGCACGCAGAGGGGGAATGAGCCGATCCCTGGCTTGCGCATTCTGCCTC
TCCGGTCGGCTAAGCATCGAACGCTCA
Found at i:15862914 original size:26 final size:26
Alignment explanation
Indices: 15862877--15862929 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15862867 GTTGACTTAG
*
15862877 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
15862903 GCATAC-GTAGTTCATTCCCAATCTAA
1 GCATACAG-AGTTCATCCCCAATCTAA
15862929 G
1 G
15862930 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:15864641 original size:26 final size:26
Alignment explanation
Indices: 15864611--15864663 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15864601 GTTAGCCTAG
15864611 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
15864637 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15864663 G
1 G
15864664 AGTTTGAACC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15865689 original size:159 final size:159
Alignment explanation
Indices: 15865511--15865861 Score: 361
Period size: 158 Copynumber: 2.2 Consensus size: 159
15865501 CGTGGGCTGG
* * * * * *
15865511 CTTAGGCATAGGGATTTCATTCCATATCTAAGCCCCAGCTAG-ATCGAGGGTTGTC-GCAGC-GG
1 CTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGATAGAACCGAGGGTTG-CGGCAGCAGG
** * * * *
15865573 CACCCGCAGCACGCAGAGGGGGATCGGGCCGATCCCCCGTTTACGCATTATGCCTCTTCGGCTAG
65 -ACCAACAGCACGCAG-GGGGGACCAGGCCGATCCCCCGTTTACGCATTATGCCTCTCCGACTAG
*
15865638 CTCAGTGCCCGCACGCTCGTTTCATGGGTTGA
128 CTCAGTGCCCACACGCTCGTTTCATGGGTTGA
* * * * *
15865670 CTTAGGCATACAGAGTTCATTCTCA-GTCTAAG-ATCGGATCGAACCGAGGGTTGCGGTAGCAGG
1 CTTAGGCATACGGAGTTCATTC-CATGTCTAAGCACCAGATAGAACCGAGGGTTGCGGCAGCAGG
* * * * * * *
15865733 ATCAATAGCACGCAGGGGGGACCAGGTCGATCCCCGGTTTACGCATTCTGCCTCTCCGATTGGCT
65 ACCAACAGCACGCAGGGGGGACCAGGCCGATCCCCCGTTTACGCATTATGCCTCTCCGACTAGCT
* * * *
15865798 GAGTGCCTACACGCTCGTTTCGTGGGTTGG
130 CAGTGCCCACACGCTCGTTTCATGGGTTGA
*
15865828 CTTAAGCATACGGAGTTCATTCCATGTCTAAGCA
1 CTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
15865862 TACGGAGTTC
Statistics
Matches: 155, Mismatches: 31, Indels: 12
0.78 0.16 0.06
Matches are distributed among these distances:
157 2 0.01
158 98 0.63
159 51 0.33
160 4 0.03
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.25
Consensus pattern (159 bp):
CTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGATAGAACCGAGGGTTGCGGCAGCAGGA
CCAACAGCACGCAGGGGGGACCAGGCCGATCCCCCGTTTACGCATTATGCCTCTCCGACTAGCTC
AGTGCCCACACGCTCGTTTCATGGGTTGA
Found at i:15865866 original size:26 final size:26
Alignment explanation
Indices: 15865830--15865885 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
15865820 TGGGTTGGCT
15865830 TAAGCATACGGAGTTCATT-CCATGTC
1 TAAGCATACGGAGTTCATTCCCA-GTC
15865856 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
15865882 TAAG
1 TAAG
15865886 ATCGGACCGG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 26 0.90
27 3 0.10
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:15865927 original size:12 final size:12
Alignment explanation
Indices: 15865910--15865941 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
15865900 AGGGTTGCGA
15865910 CAGTAGGACCAG
1 CAGTAGGACCAG
15865922 CAGTAGGACCAG
1 CAGTAGGACCAG
15865934 CAGTAGGA
1 CAGTAGGA
15865942 TCGATAGCAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.34, C:0.22, G:0.34, T:0.09
Consensus pattern (12 bp):
CAGTAGGACCAG
Found at i:15866243 original size:26 final size:26
Alignment explanation
Indices: 15866213--15866265 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15866203 GTTGACTTAT
*
15866213 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
15866239 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
15866265 G
1 G
15866266 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:15866530 original size:159 final size:159
Alignment explanation
Indices: 15866303--15866741 Score: 526
Period size: 159 Copynumber: 2.8 Consensus size: 159
15866293 TAAGATCGAT
* * * * * *
15866303 AGCACGTA-AGGGGGATCGGGCAGATCCCCAGCTTGCGCATTCTGCCTTTTCGACC-GACTGAGC
1 AGCACGCAGAGGGGGATCGGGCCGATCCCTAGCTTGCGCATTCTGCCTCTTCGGCCTG-CTGAGT
* * * * *
15866366 ACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGT
65 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG-ACCAGA
* *
15866431 C-GGACCAAGGATTGTGGCAGCGGGAGCGAC
129 CTGGACCAAGGATTGCGGCAGCAGGAGCGAC
* *
15866461 AGCACGCAGAGGGGGATCGGGCCGATCCCTAGCTTGCGCATTATGCCTCTTCGGCCTGCTCAGTG
1 AGCACGCAGAGGGGGATCGGGCCGATCCCTAGCTTGCGCATTCTGCCTCTTCGGCCTGCTGAGTG
* * * * *
15866526 CCCGCACGCTCGTTTCATGGGTTGACTTATGCATACGAAGTTCATTCCCA-GTCTAAGATCAGAC
66 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCAGAC
*** * * *
15866590 TGGATTGAGGGTTGCGGCAGTAGGATCGAC
130 TGGACCAAGGATTGCGGCAGCAGGAGCGAC
* * * * *
15866620 AGCACGCAGAGGGGGACCGGGCCGATCCCTGGCTTGCGTATTCTGCCTCTCCGGCCTGTTGAGTG
1 AGCACGCAGAGGGGGATCGGGCCGATCCCTAGCTTGCGCATTCTGCCTCTTCGGCCTGCTGAGTG
* *
15866685 CCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATCTCTAAG
66 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
15866742 GTGCCAAGGT
Statistics
Matches: 237, Mismatches: 39, Indels: 9
0.83 0.14 0.03
Matches are distributed among these distances:
158 14 0.06
159 219 0.92
160 4 0.02
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.24
Consensus pattern (159 bp):
AGCACGCAGAGGGGGATCGGGCCGATCCCTAGCTTGCGCATTCTGCCTCTTCGGCCTGCTGAGTG
CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAGACT
GGACCAAGGATTGCGGCAGCAGGAGCGAC
Found at i:15871586 original size:159 final size:157
Alignment explanation
Indices: 15871275--15871610 Score: 408
Period size: 159 Copynumber: 2.1 Consensus size: 157
15871265 TAAGCATATG
* * * *
15871275 GAGTTCATTCCTAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGTAGGATCGACAGCATGCA
1 GAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTACGACAGCAGGATCGACAGCATGCA
* * *
15871340 AGGGGATCAGGCTGATCCCTGGCTTACGCATTCTGCCTCTCCGACCAACTGAGTGCCCGCACGCT
66 AGGGGACCAGGCTGATCCCTGGCTTACGCATTCTGCCTCTCAGACCAACTGAGTGCCCGCACACT
**
15871405 TGTTTCGTGGGTTGACTTAGGCATACA
131 CATTTCGTGGGTTGACTTAGGCATACA
* *
15871432 GAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTATGATAGCAGGATCGACAGCATGCA
1 GAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTACGACAGCAGGATCGACAGCATGCA
* * * * * ***
15871497 GGGGGGGACCGGGTTGTTCCCTGGCTTGCGCATTCTGCCTCTCTAG-CTGGCTGAG-GACCCGCA
66 --AGGGGACCAGGCTGATCCCTGGCTTACGCATTCTGCCTCTC-AGACCAACTGAGTG-CCCGCA
* * *
15871560 CACTCATTTTGTGGGTTGGCTTAGGCATACG
127 CACTCATTTCGTGGGTTGACTTAGGCATACA
15871591 GAGTTCATT-CCATGTCTAAG
1 GAGTTCATTCCCA-GTCTAAG
15871611 CCCCAGACGG
Statistics
Matches: 152, Mismatches: 22, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
157 59 0.39
158 4 0.03
159 88 0.58
160 1 0.01
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.25
Consensus pattern (157 bp):
GAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTACGACAGCAGGATCGACAGCATGCA
AGGGGACCAGGCTGATCCCTGGCTTACGCATTCTGCCTCTCAGACCAACTGAGTGCCCGCACACT
CATTTCGTGGGTTGACTTAGGCATACA
Found at i:15871818 original size:26 final size:26
Alignment explanation
Indices: 15871768--15871820 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15871758 GTTCACTTAG
*
15871768 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
15871794 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
15871820 G
1 G
15871821 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:15872198 original size:26 final size:26
Alignment explanation
Indices: 15872148--15872200 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15872138 GTTGACTTAG
*
15872148 GCATACGGAGTTCATCCCCATTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
15872174 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15872200 G
1 G
15872201 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15872201 original size:380 final size:372
Alignment explanation
Indices: 15871425--15872365 Score: 1048
Period size: 380 Copynumber: 2.5 Consensus size: 372
15871415 GTTGACTTAG
* * ** * * *
15871425 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTA---T-GATAGCAGGATC
1 GCATACGGAGTTCATTCCCAATCTAAGATCAAACCGGACCGAGGGTTACGGTAGCTAGCAGGATC
* * * * * *
15871486 GACAGCATGCAGGGGGGGACCGGGTTGTTCCCTGGCTTGCGCATTCTGCCTCT-CTAGCTGGCTG
66 GACAGCATGCAGGGGGGGACTGGGTCGATCCC-GGCTTGCGCATTCTACCTCTCCGA-CCGGCTG
* * * **
15871550 AGGACCCGCACACTCATTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCC
129 AGCACCCGTACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCC
* * *
15871615 AGACGGATCGAGGGTTGTGATAGTAGGACCGGCAGCGGGATCGACAGCATGCAGAGAGGGATCGA
194 AGACGGATCAAGGGTTGTGACAATAGGACCGGCAGCGGGATCGACAGCATGCAGAGAGGGATCGA
* **
15871680 ACTGATCCCCGCCTTGCGTATTATGCCTCTCCGACCGGCCTCTCCGGTCAGCTGAGCACGCACAC
259 ACTGATCCCCGCCTTGCGCATTATGCCTCTCCGACCGGCCTCTCCGACCAGCTGAGCACGCACAC
* *
15871745 ACTCATTTTGTGGGTTCACTTAGGCATACGGAGTTCATTCCATGTCTAA
324 ACTCATTTCGTGGGTTCACTTAGGCATACGGAGTTCATCCCATGTCTAA
* *
15871794 GCATACGGAGTTCATTCCCAATCTAAGATCAAACCGGGCCGAGGGTTGCGGCAGTAGGACCAGTA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAAACCGGACCGAGGGTTAC-G--GTA-G--C--TA
* * *
15871859 GCAGGATCGACAGCACGCA-GGGGGGACTGGGCCGATCCACGGCTTGCACATTCTACCTCTCCGA
58 GCAGGATCGACAGCATGCAGGGGGGGACTGGGTCGATCC-CGGCTTGCGCATTCTACCTCTCCGA
* *
15871923 CCGGTTGAGCACCCGTACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCT
122 CCGGCTGAGCACCCGTACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
* * * * * *
15871988 AAGCCCCAGTCGGATCAAGGGTTGTGGCAATAGGACCGGTAGCGGGATCGATAGCATGTAGAGGG
187 AAGCCCCAGACGGATCAAGGGTTGTGACAATAGGACCGGCAGCGGGATCGACAGCATGCAGAGAG
** *
15872053 GGATCGGGCTGATCCCCAG-CTTGCGCATTATGCCTCTCCG-GCGGACCTCTCCGACC-GACTGA
252 GGATCGAACTGATCCCC-GCCTTGCGCATTATGCCTCTCCGACCGG-CCTCTCCGACCAG-CTGA
* * * * *
15872115 GCGTC-CGCACTCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAT-TCTAA
314 GC-ACGCACACACTCATTTCGTGGGTTCACTTAGGCATACGGAGTTCAT-CCCATGTCTAA
* * * *
15872174 GCATATGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGC-A--A-GATC
1 GCATACGGAGTTCATTCCCAATCTAAGATCAAACCGGACCGAGGGTTACGGTAGCTAGCAGGATC
* * * * * * * * *
15872235 GATAGCATGTAGGGGGGGACTAGGTCGATCCTCGGCTCGTGCTTTTTTCCTCTCTGACCGGCTGA
66 GACAGCATGCAGGGGGGGACTGGGTCGATCC-CGGCTTGCGCATTCTACCTCTCCGACCGGCTGA
* * * *
15872300 GCGCCCGTACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
130 GCACCCGTACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCA
15872365 G
195 G
15872366 CTGGACTGAG
Statistics
Matches: 480, Mismatches: 72, Indels: 40
0.81 0.12 0.07
Matches are distributed among these distances:
368 12 0.03
369 144 0.30
371 1 0.00
374 1 0.00
375 1 0.00
376 1 0.00
377 4 0.01
379 5 0.01
380 282 0.59
381 29 0.06
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (372 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCAAACCGGACCGAGGGTTACGGTAGCTAGCAGGATC
GACAGCATGCAGGGGGGGACTGGGTCGATCCCGGCTTGCGCATTCTACCTCTCCGACCGGCTGAG
CACCCGTACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAG
ACGGATCAAGGGTTGTGACAATAGGACCGGCAGCGGGATCGACAGCATGCAGAGAGGGATCGAAC
TGATCCCCGCCTTGCGCATTATGCCTCTCCGACCGGCCTCTCCGACCAGCTGAGCACGCACACAC
TCATTTCGTGGGTTCACTTAGGCATACGGAGTTCATCCCATGTCTAA
Found at i:15872463 original size:159 final size:160
Alignment explanation
Indices: 15872283--15872680 Score: 437
Period size: 159 Copynumber: 2.5 Consensus size: 160
15872273 GTGCTTTTTT
* * * *
15872283 CCTCTCTGACCGGCTGAGCGCCCGTACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCAT
1 CCTCTCTGACCGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
* * * ** * * * *
15872348 TCCATGTCTAAGCCCCAGCT-GGACTGAGGGTTGTGGCAGCTGGACCGGCAGCGCGTA-GAGGGG
66 TCCATGTCTAAGCACCAGATCGGACCGAGGGTTGCAGCAGCAGGACCGACAGCACGCAGGA-GGG
15872411 GACCGAGCCAATCCCCGGCTTGCGCATTATG
130 GACCGAGCCAATCCCCGGCTTGCGCATTATG
** * * ** *
15872442 CCTCTGC-GGTCGGCTCAGCGCCCGCACGCTCATTTCGTGGGTTCACTTATGCATACGGAGTTCA
1 CCTCT-CTGACCGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCA
* * *
15872506 TTCCCAT-TCTAAG-ATCAGATCGGACCGAGGGTTGCAGCAGCAGGATCGATAGCACGCAGGAGG
65 TT-CCATGTCTAAGCACCAGATCGGACCGAGGGTTGCAGCAGCAGGACCGACAGCACGCAGGAGG
* * *
15872569 GGACCGGGCCGATCCCCGGCTTGCGCATTCTG
129 GGACCGAGCCAATCCCCGGCTTGCGCATTATG
* ** ** *
15872601 CCTCTCTGACCGACTGAGCGCTTGCACGCTCTTTTTCGTGGGTTGGCTTAGGCATACGAAGTTCA
1 CCTCTCTGACCGGCTGAGCGCCCGCACGC-CCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCA
15872666 TTCCATGTCTAAGCA
65 TTCCATGTCTAAGCA
15872681 TAAGGAGTTC
Statistics
Matches: 192, Mismatches: 39, Indels: 14
0.78 0.16 0.06
Matches are distributed among these distances:
158 5 0.03
159 143 0.74
160 43 0.22
161 1 0.01
ACGTcount: A:0.17, C:0.29, G:0.30, T:0.23
Consensus pattern (160 bp):
CCTCTCTGACCGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
TCCATGTCTAAGCACCAGATCGGACCGAGGGTTGCAGCAGCAGGACCGACAGCACGCAGGAGGGG
ACCGAGCCAATCCCCGGCTTGCGCATTATG
Found at i:15873411 original size:26 final size:26
Alignment explanation
Indices: 15873375--15873427 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15873365 GTTGACTTAG
15873375 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
15873401 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15873427 G
1 G
15873428 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15873763 original size:159 final size:158
Alignment explanation
Indices: 15873401--15873796 Score: 395
Period size: 159 Copynumber: 2.5 Consensus size: 158
15873391 CCCAGTCTAA
* *
15873401 GCATATGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGTAGTAGCAAGATCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGTAGCAGCAAGATCAGCA
* * * * ** * * *
15873466 GCACGCAGGGGGGACTGGGTCGATCCCTGGCTTACGTATTCTTCCTCTCCAGTCGGCTCAGCACC
66 GCACACAGGGGGGACCGGGCCGATCCCCGGCTTACACATTATGCCTCTCCACTCGGCTCAGCACC
* * * * *
15873531 CGCACGCCCTTTTTGTGGGTTGGCTTTG
131 CGAACGCACGTTTTGTGGGTTGACTTAG
* ** * * * * *
15873559 GCATAGGGAGTTCATT-CCATGTCTAAGCCCTAGCCAGACTGAGGGTTGTGGCAG-AGAGATCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGAACCAGACCGAGGGTTGTAGCAGCA-AGATCAG
* *
15873622 TAGCACACAGAGGGGGACCGGGCCGATCCCCGGCTTGCACATTATGCCTCTCCGACT-GGCTCAG
64 CAGCACACAG-GGGGGACCGGGCCGATCCCCGGCTTACACATTATGCCTCTCC-ACTCGGCTCAG
** *
15873686 TGCTCGAACGCACGTTTTGTGGGTTGACTTAG
127 CACCCGAACGCACGTTTTGTGGGTTGACTTAG
* * * * *
15873718 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTAGCAACAGGATC-GAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGTAGCAGCAAGATCAG-C
**
15873782 AGCACGTAGGGGGGA
65 AGCACACAGGGGGGA
15873797 TCAGGTCGGT
Statistics
Matches: 188, Mismatches: 43, Indels: 14
0.77 0.18 0.06
Matches are distributed among these distances:
157 4 0.02
158 63 0.34
159 115 0.61
160 6 0.03
ACGTcount: A:0.21, C:0.26, G:0.31, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGTAGCAGCAAGATCAGCA
GCACACAGGGGGGACCGGGCCGATCCCCGGCTTACACATTATGCCTCTCCACTCGGCTCAGCACC
CGAACGCACGTTTTGTGGGTTGACTTAG
Found at i:15873908 original size:26 final size:26
Alignment explanation
Indices: 15873879--15873928 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
15873869 GGCTTCGACA
15873879 TACGGAGTACATT-CCACGTCTAAGCG
1 TACGGAGTACATTCCCA-GTCTAAGCG
*
15873905 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTACATTCCCAGTCTAAG
15873929 ATCGAACCAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (26 bp):
TACGGAGTACATTCCCAGTCTAAGCG
Found at i:15874088 original size:26 final size:26
Alignment explanation
Indices: 15874058--15874110 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15874048 GTTGACTTAG
15874058 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
15874084 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
15874110 G
1 G
15874111 ATTGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:15874269 original size:184 final size:182
Alignment explanation
Indices: 15873718--15874269 Score: 581
Period size: 182 Copynumber: 3.0 Consensus size: 182
15873708 GTTGACTTAG
* * * *
15873718 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTAGCAACAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAAGGTTGTGGCAGCAGGATCGGCA
* * * * * **
15873783 GCACGTAGGGGGGATCAGGTCGGTCCCCGATTTGTGCATTCTACCTCTCCGATCGGTTGAGCACC
66 GCACG-AGGGGGGATCAGGTCGATCCCCGACTTGCGCATTCTTCCTCTCCGACCGACTGAGCACC
* * * * * *
15873848 CGCATGCTCGTTTCATTGGTTGGCTTCGACATACGGAGTACATTCCACGTCTAA
130 CACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCA-GTCTAA
* * * * * * * * *
15873902 GCGTACGGAGTTCATTCCCAGTCTAAGATCGAACCAGATCGATGGTTGAGGCAGCAGGACCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAAGGTTGTGGCAGCAGGATCGGCA
* * * * *
15873967 GCA-GAGGGGGGACCGGGTCGATCCCCGAGTTACGTATTCTGT-CTCTCCGACCGACTGAGCACC
66 GCACGAGGGGGGATCAGGTCGATCCCCGACTTGCGCATTCT-TCCTCTCCGACCGACTGAGCACC
* * * * *
15874030 CTCACGCTGGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAA
130 CACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT-TCCAGTCTAA
* * *
15874084 GCATACAGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAAGGTTGTGGCAGCTGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAAGGTTGTGGCAGCAGGATCGGCA
* ** **
15874149 GCACGCAGGGGAGATCAGACCGATCCCTC-ACTTGCGCATTCTTCCTCTCCGACCGACTGAGTGC
66 GCACG-AGGGGGGATCAGGTCGATCCC-CGACTTGCGCATTCTTCCTCTCCGACCGACTGAGCAC
* * *
15874213 TCACACG-TCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATTTCTAA
129 CCACACGCTC-GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCA-GTCTAA
15874268 GC
1 GC
15874270 CCCAGCCGAA
Statistics
Matches: 297, Mismatches: 63, Indels: 16
0.79 0.17 0.04
Matches are distributed among these distances:
182 143 0.48
183 10 0.03
184 143 0.48
185 1 0.00
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.24
Consensus pattern (182 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAAGGTTGTGGCAGCAGGATCGGCA
GCACGAGGGGGGATCAGGTCGATCCCCGACTTGCGCATTCTTCCTCTCCGACCGACTGAGCACCC
ACACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAGTCTAA
Found at i:15875979 original size:26 final size:26
Alignment explanation
Indices: 15875949--15876001 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15875939 GTTGGCTTAG
15875949 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15875975 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15876001 G
1 G
15876002 ATTGAACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15876125 original size:183 final size:184
Alignment explanation
Indices: 15875791--15876159 Score: 474
Period size: 183 Copynumber: 2.0 Consensus size: 184
15875781 GTTGACTTAG
*
15875791 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAGGGTTACGGCAGCAGCATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAGGGTTACGACAGCAGCATTGACA
* * * * *
15875856 GCACACAGGGGGGATCGGGCCGATCCCTGGTTTACACATTCTACCTCTCCAATCGGCTGAGCGCC
66 GCACACAGGGGGGATCGGGCCAATCCCCGGCTTACACATTCTACCTCTCCAACCGACTGAGCGCC
* * *
15875921 CGTAAGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
131 CGCAAGCTAGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
* * * * *
15875975 GCATACGGAGTTCATTCCCAGTCTAAGAT-TGAACC--AGCTGAGGGTTGCGACAGTAGGATTGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGAATC-GAGGGTTACGACAGCAGCATTGA
* * * * * * * *
15876037 CAGCACACAGGGTGGATCGGGTCAATCCCCGGCTTGCGCATTTTGCCTCTCCGACCGACTGAGTG
64 CAGCACACAGGGGGGATCGGGCCAATCCCCGGCTTACACATTCTACCTCTCCAACCGACTGAGCG
* **
15876102 CCCGCACGCTAGTTTTGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
129 CCCGCAAGCTAGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
15876158 GC
1 GC
15876160 CCCAGTCAGA
Statistics
Matches: 158, Mismatches: 25, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
182 2 0.01
183 124 0.78
184 32 0.20
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.25
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAGGGTTACGACAGCAGCATTGACA
GCACACAGGGGGGATCGGGCCAATCCCCGGCTTACACATTCTACCTCTCCAACCGACTGAGCGCC
CGCAAGCTAGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
Found at i:15876560 original size:356 final size:355
Alignment explanation
Indices: 15875908--15876595 Score: 794
Period size: 356 Copynumber: 1.9 Consensus size: 355
15875898 ACCTCTCCAA
* * *
15875908 TCGGCTGAGCGCCCGTAAGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
1 TCGGCTGAGCGCCCGCAAGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCT
* * ** * * * *
15875973 AAGCATACGGAGTTCATTCCCAGTCTAAGATTGAACCAGCTGAGGGTTGCGACAGTAGGATTGAC
66 AAGCATACGAAGTTCATTCCCAGTCTAAGATCGAACCAGCCAAGGGTTACGACAGCAAGATCGAC
* * * * *
15876038 AGCACACAGGGTGGATCGGGTCAATCCCCGGCTTGCGCATTTTGCCTCTCCGACCGACTGAGTGC
131 AGCACACAGGGTGGATCGGGCCAATCCCCAGCTTGCGCATTCTACCTCTCCGACCGACTGAGTCC
* ** * * *
15876103 CCGCACGCTAGTTTTGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTCA
196 CCGCACGCCAGTTTCATGGGTTGGCCTAGGCATACAGAGTTCATTCCACGTCTAAACCCCAGTCA
* * * * * * * * * *
15876168 GACCGAGGGTTGTGGTAGTGGGAGTGGTAGCATGCAG-AGGGGGATCGGGCTGATCCCCAACTTG
261 AACCGAGGGTTGTGGTAGCGGGACTAGCAACATGCAGCA-AGAGATCGGGCCGATCCCCAACTTA
15876232 CGCATTATGTCTCTCCGGTCGGCCTCTACGG
325 CGCATTATGTCTCTCCGGTCGGCCTCTACGG
* * *
15876263 TCGGCTGAGCGCCCGCATGCTCGTTTCATGGGTTGACTTAGGTATACGGAGTTGATCCCCA-GTC
1 TCGGCTGAGCGCCCGCAAGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT-CCCATGTC
* * * * * *
15876327 TAAGCATATGAAGTTCATTTCCAGTCTAAGATCGGATCGGACCAAGGGTTACGGCAGCAAGATCG
65 TAAGCATACGAAGTTCATTCCCAGTCTAAGATCGAACCAG-CCAAGGGTTACGACAGCAAGATCG
* * ** *
15876392 ACAGCACGTA-AGGG-GGATCGGGCCGATCCCTAGCTTGCTTATTCTACCTCTCCGGCCTG-CTG
129 ACAGCAC--ACAGGGTGGATCGGGCCAATCCCCAGCTTGCGCATTCTACCTCTCCGACC-GACTG
* * **
15876454 A-TCCCCTGTATGCCAGTTTCATGGGTTGGCCTAGGCATAGGGAGTTCATTCCACGTCTAAACCC
191 AGTCCCC-GCACGCCAGTTTCATGGGTTGGCCTAGGCATACAGAGTTCATTCCACGTCTAAACCC
* * *
15876518 CAGTCAAACTGAGGGTTGTGGTAGCGGGACTAGCAACATGCAGCAAGAGATCGGGCCGATCCTCG
255 CAGTCAAACCGAGGGTTGTGGTAGCGGGACTAGCAACATGCAGCAAGAGATCGGGCCGATCCCCA
15876583 ACTTACGCATTAT
320 ACTTACGCATTAT
15876596 CCCTCTTTGG
Statistics
Matches: 273, Mismatches: 53, Indels: 13
0.81 0.16 0.04
Matches are distributed among these distances:
355 91 0.33
356 175 0.64
357 6 0.02
358 1 0.00
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (355 bp):
TCGGCTGAGCGCCCGCAAGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCT
AAGCATACGAAGTTCATTCCCAGTCTAAGATCGAACCAGCCAAGGGTTACGACAGCAAGATCGAC
AGCACACAGGGTGGATCGGGCCAATCCCCAGCTTGCGCATTCTACCTCTCCGACCGACTGAGTCC
CCGCACGCCAGTTTCATGGGTTGGCCTAGGCATACAGAGTTCATTCCACGTCTAAACCCCAGTCA
AACCGAGGGTTGTGGTAGCGGGACTAGCAACATGCAGCAAGAGATCGGGCCGATCCCCAACTTAC
GCATTATGTCTCTCCGGTCGGCCTCTACGG
Found at i:15877565 original size:26 final size:26
Alignment explanation
Indices: 15877529--15877579 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15877519 TTGAGTTAGG
15877529 CATACGGAGTTCATCCCCAGTCTAAA
1 CATACGGAGTTCATCCCCAGTCTAAA
* *
15877555 CATATGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATCCCCAGTCTAA
15877580 GATCAGACTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAA
Found at i:15879432 original size:26 final size:26
Alignment explanation
Indices: 15879396--15879448 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15879386 GTTGGCTTAG
15879396 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
15879422 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15879448 G
1 G
15879449 ATTGGACTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15879791 original size:184 final size:184
Alignment explanation
Indices: 15879565--15880001 Score: 585
Period size: 184 Copynumber: 2.4 Consensus size: 184
15879555 GCCTGTCTGA
* * ** *
15879565 CGGGCTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATATGGAGTTCATCCCCA-GTC
1 CGGG-TGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCAT-TCCATGTC
* * * *
15879629 TAAGCATAC-GAAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGATAGCAGGATC
64 TAAGCATACAG-AGTTCATTCCCAGTCTAAGATCAAACCGGATCGAGGGTTGCGACAACAGGATC
* * *
15879693 GACAGCATGCA-GAGGGGA-CTGGGTTGATCCCTGACTTGCGCATTCTACCTCTCTGGC
128 GACAGCACGCAGGA-GGGATC-GGGTCGATCCCCGACTTGCGCATTCTACCTCTCTGGC
*
15879750 CGGGTGAGCACCCGCACGCTCGTTTCTTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTA
1 CGGGTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTA
* *
15879815 AGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCGGATTGAGGGTTGCGACAATAGGATCGAC
66 AGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCGGATCGAGGGTTGCGACAACAGGATCGAC
* * *
15879880 AGCACGCAGGAGGGATCGGGTCGATCCCCGGCTTGGGCATTCTGCCTCTCTGGC
131 AGCACGCAGGAGGGATCGGGTCGATCCCCGACTTGCGCATTCTACCTCTCTGGC
* ** * * *
15879934 CGGCTGAGTGCCCGCATGCTAGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTA
1 CGGGTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTA
15879999 AGC
66 AGC
15880002 CCCAGTCGGA
Statistics
Matches: 224, Mismatches: 24, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
183 3 0.01
184 213 0.95
185 8 0.04
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (184 bp):
CGGGTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTA
AGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCGGATCGAGGGTTGCGACAACAGGATCGAC
AGCACGCAGGAGGGATCGGGTCGATCCCCGACTTGCGCATTCTACCTCTCTGGC
Found at i:15879826 original size:26 final size:26
Alignment explanation
Indices: 15879790--15879842 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15879780 GTTGGCTTAG
15879790 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
15879816 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15879842 G
1 G
15879843 ATCAAACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15880176 original size:26 final size:26
Alignment explanation
Indices: 15880146--15880198 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15880136 GTTGACTTAG
*
15880146 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
15880172 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
15880198 G
1 G
15880199 ATCGGATTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:15880452 original size:356 final size:356
Alignment explanation
Indices: 15879754--15880452 Score: 796
Period size: 356 Copynumber: 2.0 Consensus size: 356
15879744 TCTGGCCGGG
* * *
15879754 TGAGCACCCGCACGCTCGTTTCTTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCA
1 TGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCATGTCTAAGCA
* *** * *
15879819 TACAGAGTTCATTCCCAGTCTAAGATCAAACCGGATTGAGGGTTGCGACAATAGGATCGACAGCA
66 TACAGAGTTCATTCCCAGTCTAAGATCAAACCAGACCAAGGGTTACGACAATAAGATCGACAGCA
* * * *
15879884 CGCAGGAGGGATCGGGTCGATCCCCGGCTTGGGCATTCTGCCTCTCTGGCCGGCTGAGTGCCCGC
131 CGCAGGAGGGATCAGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCTGGCCGGCTGAGTCCCCGC
* * * *
15879949 ATGCTAGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTCGGACC
196 ATGCCAGTTTCGTGGGTTCGCCTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTCGAACC
* ** * * * * * *
15880014 GAGGGTTGTGGCAGCGAGAGTGGTAGCACGCAGAGGGGGATCAGGCTGATCACCAACTTGCACAT
261 GAGGGTTATGGCAGCGAGACCGGCAACACGCAGAGAGAGATCAGGCCGATCACCAACTTACACAT
**
15880079 TATGTCTCTCCGGTTGGCCTCTACGGTCCGC
326 TATCCCTCTCCGGTTGGCCTCTACGGTCCGC
* * *
15880110 TGAGCGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGC
1 TGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCAT-CCCATGTCTAAGC
** ** * * **
15880174 ATAC-GAAGTTCATTCCCAGTCTAAGATCGGATTAGACCAAGGGTTACGGCAGTAAGATCGGTAG
65 ATACAG-AGTTCATTCCCAGTCTAAGATCAAACCAGACCAAGGGTTACGACAATAAGATCGACAG
* * ** * * *
15880238 CATGCAGGGGGGATCAGGTCGATCCCCAGCTTGCTTATTCTGCCTTTCTGGCCTGTTGAG-CCCC
129 CACGCAGGAGGGATCAGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCTGGCCGGCTGAGTCCCC
* **
15880302 TGTATGCCAGTTTCGTGGGTTCGCCTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGA
194 -GCATGCCAGTTTCGTGGGTTCGCCTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTCGA
* * * ** *
15880367 ATCGAGGGTTATGGTAGCGAGACCGGCAACATGCA-ATGAGAGATTGGGCCGATC-CTCGACTTA
258 ACCGAGGGTTATGGCAGCGAGACCGGCAACACGCAGA-GAGAGATCAGGCCGATCAC-CAACTTA
* **
15880430 CGCATTATCCCTCTTTGGTTGGC
321 CACATTATCCCTCTCCGGTTGGC
15880453 TCAGCGCCCG
Statistics
Matches: 280, Mismatches: 58, Indels: 10
0.80 0.17 0.03
Matches are distributed among these distances:
355 6 0.02
356 271 0.97
357 3 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (356 bp):
TGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCATGTCTAAGCA
TACAGAGTTCATTCCCAGTCTAAGATCAAACCAGACCAAGGGTTACGACAATAAGATCGACAGCA
CGCAGGAGGGATCAGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCTGGCCGGCTGAGTCCCCGC
ATGCCAGTTTCGTGGGTTCGCCTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTCGAACC
GAGGGTTATGGCAGCGAGACCGGCAACACGCAGAGAGAGATCAGGCCGATCACCAACTTACACAT
TATCCCTCTCCGGTTGGCCTCTACGGTCCGC
Found at i:15881408 original size:26 final size:26
Alignment explanation
Indices: 15881372--15881422 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15881362 TTGACTTAGG
15881372 CATACGGAGTTCATCCCCAGTCTAAA
1 CATACGGAGTTCATCCCCAGTCTAAA
* *
15881398 CATATGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATCCCCAGTCTAA
15881423 GATTAGACTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAA
Found at i:15881909 original size:26 final size:26
Alignment explanation
Indices: 15881873--15881925 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15881863 GTTGGCTTAG
15881873 GCATACAGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
*
15881899 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
15881925 G
1 G
15881926 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:15883279 original size:26 final size:26
Alignment explanation
Indices: 15883242--15883294 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15883232 GTTGGTTTAG
*
15883242 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
15883268 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15883294 G
1 G
15883295 ATCGGACTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15883328 original size:520 final size:515
Alignment explanation
Indices: 15882343--15883341 Score: 1197
Period size: 520 Copynumber: 1.9 Consensus size: 515
15882333 ATCCTTGGCT
* * **
15882343 TGCACATTCTGCCTGTCCAGTCGCTTGAGCACCCACACGTCTGTTTCATGGGTTGGCTTAGGCAT
1 TGCACATTCTGCCTCTCCAGCCAATTGAGCACCCACACGTCTGTTTCATGGGTTGGCTTAGGCAT
* * * *
15882408 AGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCAAGGGTTGTAGCAGCGAGACTGACAGCGT
66 AGGAAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTAGCAGCGAGACTGACAGCGC
* ** ** * * * *
15882473 ATAGAGAGGGACCCGATCGATCCATGGCTTGTGCATTATGCCTCTTCGATCGGCTTAGTGCCCGC
131 AGAGAGAGGGACCCGATCGATCCATAACTTACGCATTATGCCTCTTCGACCAGCTCAGCGCCCGC
* * * * * *
15882538 ACACTCGTTTCGTGGGTGGACTTATGTATATGAAGTTCATTCCCAGTCTAAGATTAGACTGGACT
196 ACACTCATTTCATGGGTGGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGACT
* * * *
15882603 GAGGGTTGACGCAGCAGGATCGACAGCACGCAGGGGGGGATCGGGTCGATCCCCGACTTGCGCAT
261 GAGGGTTGACGCAACAGAATCGACAGCACGCAGAGGGGGATCGGGCCGATCCCCGACTTGCGCAT
* * *
15882668 TCTGCCTCTCCGGCTGCCTGAGCACCTGCATGCTCGTTTCATGGGTTGGCTTAGGCATACAAAGT
326 TCTACCTCTCCGGCTGCCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAAAGT
* * ** * *
15882733 TCATTCCATGTCTAAGCATGCGGAGTTCATTCCCAATCTAAGATAGGATCGGGCTGAGGGTTGCA
391 TCATTCCATGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATAGGATCGGAATGAGCGTTACA
15882798 GTAACAGGACCAGCAACAGGATCGGTAGCACGCAAGAGGGGACTGGACCGATCCCCGGCA
456 GTAACAGGACCAGCAACAGGATCGGTAGCACGCAAGAGGGGACTGGACCGATCCCCGGCA
* * * *
15882858 TGCACATTCTGCCTCTCCGGCCAATTGAGCGCCCGCACG-CTCGTTTCGTGGGTTGGCTTAGGCA
1 TGCACATTCTGCCTCTCCAGCCAATTGAGCACCCACACGTCT-GTTTCATGGGTTGGCTTAGGCA
* * *
15882922 TATGAAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTAGCAGCGAGACTGGCAGTA
65 TAGGAAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTAGCAGCGAGACTGACAG--
* * * * * *
15882987 CGCAGAG-GGGGGACCGGGTCTATCCCTAACTTACGCATTATGCCTCTTCGGCCAGCTCAGCGCC
128 CGCAGAGAGAGGGACCCGATCGATCCATAACTTACGCATTATGCCTCTTCGACCAGCTCAGCGCC
* * * * *
15883051 TGTACACTCATTTTATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGATTGG
193 CGCACACTCATTTCATGGGTGGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGG
* *
15883116 A-TCGAACCAAGGGTTG-CAGCAATAGAATCGACAGCACGCA-AGGGGGATCGGGCCGATCCCTG
258 ACT-G-----AGGGTTGAC-GCAACAGAATCGACAGCACGCAGAGGGGGATCGGGCCGATCCCCG
* * * * *
15883178 ACTTGCGCATTCTACCTCTCCGG-TCGGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGGTTTAG
316 ACTTGCGCATTCTACCTCTCCGGCT-GCCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAG
** * * *
15883242 GCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGA-CTGAA
380 GCATACAAAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATAGGATCGGAA
* *
15883306 TCGAGCGTTAC-G-ACAGCAGGACCAGTAGCAGGATCG
445 T-GAGCGTTACAGTA-A-CAGGACCAGCAACAGGATCG
15883342 ACAGCACACA
Statistics
Matches: 402, Mismatches: 68, Indels: 23
0.82 0.14 0.05
Matches are distributed among these distances:
514 2 0.00
515 111 0.28
516 99 0.25
517 5 0.01
518 1 0.00
519 6 0.01
520 152 0.38
521 26 0.06
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (515 bp):
TGCACATTCTGCCTCTCCAGCCAATTGAGCACCCACACGTCTGTTTCATGGGTTGGCTTAGGCAT
AGGAAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTTGTAGCAGCGAGACTGACAGCGC
AGAGAGAGGGACCCGATCGATCCATAACTTACGCATTATGCCTCTTCGACCAGCTCAGCGCCCGC
ACACTCATTTCATGGGTGGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGACT
GAGGGTTGACGCAACAGAATCGACAGCACGCAGAGGGGGATCGGGCCGATCCCCGACTTGCGCAT
TCTACCTCTCCGGCTGCCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAAAGT
TCATTCCATGTCTAAGCATACGAAGTTCATTCCCAATCTAAGATAGGATCGGAATGAGCGTTACA
GTAACAGGACCAGCAACAGGATCGGTAGCACGCAAGAGGGGACTGGACCGATCCCCGGCA
Found at i:15883434 original size:26 final size:26
Alignment explanation
Indices: 15883395--15883447 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15883385 GTTGACTTAG
*
15883395 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
15883421 GCATACGGATTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15883447 G
1 G
15883448 ATCAAATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15884236 original size:158 final size:157
Alignment explanation
Indices: 15883728--15884252 Score: 455
Period size: 158 Copynumber: 3.3 Consensus size: 157
15883718 TGGCTGGCAA
* ** *** *
15883728 AGCGCCCGTACGCTCGTTTCATCAGTTGACTTAGGCATGCAGAGTTCATTCCCAGTCCAAGATCA
1 AGCGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCA
* ** * * * * *
15883793 GACTGGACCGAAGGTTGCGACAGTAGGATCGGTAGTACGCAGGAGGGATCGGGTCGATCCCTGGC
66 GACCGGACCG-AGGTTGCGACAGTAGGATCGACAGCACGAAGGGGGGATCGGGCCGATCCCTGAC
* * *
15883858 TTACCCATTCTACCTCTCCGGCCGGCTG
130 TTACGCATTCTGCCTCTCCGGTCGGCTG
* * * * * *
15883886 AGCACCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCAT-TGGGAGTTCATT-CCATGTGTAAGCC
1 AGCGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATAT-GGAGTTCATTCCCA-GTCTAAG-A
* * * * * * ** ** *
15883949 CCAG-TCGGACCGAGGGTTGTGGCAGCAGGATAGACAGCACGCAAATGGGGATCGGGCTAAT-TC
63 TCAGACCGGACCGA-GGTTGCGACAGTAGGATCGACAGCACG-AAGGGGGGATCGGGCCGATCCC
* ** * *
15884012 TCGACTTGCGCATTAAGCCTCTCCGATCGGCTC
126 T-GACTTACGCATTCTGCCTCTCCGGTCGGCTG
* * *
15884045 AGCGCCCGAACGCTCATTTTATGGGTTGACTTAGGCATATGGAGTTCGTTCCCAGTCTAAGATCA
1 AGCGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCA
* * *
15884110 GACCAGACCGAGTGTTGCGACAGTAGGATCGACAGCACGTAGGGGGGATCGGGCCGGTCCCTGAC
66 GACCGGACCGAG-GTTGCGACAGTAGGATCGACAGCACGAAGGGGGGATCGGGCCGATCCCTGAC
* * *
15884175 TTATGCATTCTGCCTCTCTGGTCGACTG
130 TTACGCATTCTGCCTCTCCGGTCGGCTG
** * * * *
15884203 AGCGTTCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATT
1 AGCGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATT
15884253 GCATGTCTAA
Statistics
Matches: 279, Mismatches: 77, Indels: 22
0.74 0.20 0.06
Matches are distributed among these distances:
157 4 0.01
158 156 0.56
159 115 0.41
160 4 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.25
Consensus pattern (157 bp):
AGCGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCA
GACCGGACCGAGGTTGCGACAGTAGGATCGACAGCACGAAGGGGGGATCGGGCCGATCCCTGACT
TACGCATTCTGCCTCTCCGGTCGGCTG
Done.