Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19866354
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 74000 characters in sequence are not A, C, G, or T
File 70 of 100
Found at i:15884606 original size:26 final size:26
Alignment explanation
Indices: 15884576--15884628 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15884566 GTTGACTTAG
15884576 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
15884602 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
15884628 G
1 G
15884629 ATCGAATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:15885464 original size:159 final size:157
Alignment explanation
Indices: 15885102--15885604 Score: 386
Period size: 159 Copynumber: 3.2 Consensus size: 157
15885092 CAATGTCTAA
* * *
15885102 GCATACGGAGTTCATTTCCAGTCTAAGATCAGACCAGACCTAGGGTTGTGGCAGCAGGATCGACA
1 GCATACGGAGTTCA-TTCCAGTCTAAGATCAGACCAGACCGAGGGTTGGGGCAGCAGGACCGACA
* ** * * * * * *
15885167 GCACGCAGGGGGGACCAGGTGGATCCCTGGCTTGCTCATTCTGCCTCTCTAGTCGACTGAGCGCC
65 GCACACAGGGGGGACCAGGCCGATCCCCGGCTTACGCATTATGCCTCTCGAGTCGACTCAGCGCC
* *
15885232 CACACACCCATTTTGTGGGTTGGCTTAG
130 CACACACCCATTTCGTGGGTTGACTTAG
* * ** * *
15885260 GTATAGGGAGTTCATTCCATGTCTAAGCCCA-AGCCAGACTGAGGGTTGGGGCAGCGGGACCGAC
1 GCATACGGAGTTCATTCCA-GTCTAAGATCAGA-CCAGACCGAGGGTTGGGGCAGCAGGACCGAC
* * * *
15885324 AGCACACAGAGGGGGATCGGGCCGATCCCCGGCTTACGCATTATGCCTCTTCGA-TCGGCTCAGT
64 AGCACACAG-GGGGGACCAGGCCGATCCCCGGCTTACGCATTATGCCTC-TCGAGTCGACTCAGC
* *
15885388 GCCCGA-ACGCTCATTTCGTGGGTTGACTTAG
127 GCCC-ACACACCCATTTCGTGGGTTGACTTAG
* * * ** * **
15885419 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGGTAGCAGGATTGACA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGACCAGACCGAGGGTTGGGGCAGCAGGACCGACA
** * * * ** * * * * * *
15885484 GGGCACATGGGGGGACCTGGCCCG-TCCCTGACTTGTGCATTCTACCACTTCGA-TTGGCTGAGC
65 GCACACA-GGGGGGACCAGG-CCGATCCCCGGCTTACGCATTATGCCTC-TCGAGTCGACTCAGC
* * * * * *
15885547 GCCCACACGCTCGTTTCATGGTTTGGCTTAG
127 GCCCACACACCCATTTCGTGGGTTGACTTAG
*
15885578 GCATACGGAGTTTATTCCAGGTCTAAG
1 GCATACGGAGTTCATTCCA-GTCTAAG
15885605 CATACGAAGT
Statistics
Matches: 275, Mismatches: 59, Indels: 21
0.77 0.17 0.06
Matches are distributed among these distances:
157 6 0.02
158 59 0.21
159 198 0.72
160 12 0.04
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGACCAGACCGAGGGTTGGGGCAGCAGGACCGACAG
CACACAGGGGGGACCAGGCCGATCCCCGGCTTACGCATTATGCCTCTCGAGTCGACTCAGCGCCC
ACACACCCATTTCGTGGGTTGACTTAG
Found at i:15885607 original size:26 final size:26
Alignment explanation
Indices: 15885578--15885630 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15885568 TTTGGCTTAG
* *
15885578 GCATACGGAGTTTATT-CCAGGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
15885604 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15885630 G
1 G
15885631 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15885674 original size:12 final size:12
Alignment explanation
Indices: 15885654--15885686 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
15885644 GAGGGTCATG
*
15885654 GCAGCAGGACCA
1 GCAGTAGGACCA
15885666 GCAGTAGGACCA
1 GCAGTAGGACCA
15885678 GCAGTAGGA
1 GCAGTAGGA
15885687 TCGACAGCAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.33, C:0.24, G:0.36, T:0.06
Consensus pattern (12 bp):
GCAGTAGGACCA
Found at i:15886158 original size:26 final size:26
Alignment explanation
Indices: 15886128--15886180 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
15886118 GTTGGCTTAG
15886128 GCATAC-AACGTTCATTCC-ATGTCTAA
1 GCATACGAA-GTTCATTCCTA-GTCTAA
*
15886154 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
15886180 G
1 G
15886181 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:15887527 original size:26 final size:26
Alignment explanation
Indices: 15887491--15887543 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15887481 GTTAACTTAG
15887491 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
15887517 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15887543 G
1 G
15887544 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15888309 original size:158 final size:158
Alignment explanation
Indices: 15888054--15888360 Score: 391
Period size: 158 Copynumber: 1.9 Consensus size: 158
15888044 AGATTGGATC
* * *
15888054 GGACAGAGGGTTGCGACAGCAGGATCAACAGCACGCAGGGGGGACTGGGGCGATCCCCGGCTTAT
1 GGACAGAGGGTTGCGACAGCAGAATCAACAGCACGCAGGGGGGACTGGGCCGATCCCCGGCTTAC
*
15888119 GCATTCCACCTCTCCGACCGGCTGAGCACCCGCACACCCATTTCATGGGTTGGCTTAGGCATAGG
66 GCATTCCACCTCTCCGACCGGCTGAGCACCCGCACACCCATTTCATAGGTTGGCTTAGGCATAGG
15888184 GAGTTCATTCCATATCTAAACCCCAGTG
131 GAGTTCATTCCATATCTAAACCCCAGTG
* * * * * * *
15888212 GGACCGAGGGTTGTGGCAGCAGAATCGACAGCACGTAGGGGGGATTGGGCCGGTCCCCGGC-TAG
1 GGACAGAGGGTTGCGACAGCAGAATCAACAGCACGCAGGGGGGACTGGGCCGATCCCCGGCTTA-
* * ** ** * * * * *
15888276 CGCATTCTACCTCTCTGGTCGGCTGAGTGCCCGCACGCTCGTTTCGTAGGTTGGCTTAGGCATAT
65 CGCATTCCACCTCTCCGACCGGCTGAGCACCCGCACACCCATTTCATAGGTTGGCTTAGGCATAG
*
15888341 GGAGTTCATTCCATGTCTAA
130 GGAGTTCATTCCATATCTAA
15888361 GTATATGAAG
Statistics
Matches: 125, Mismatches: 23, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
157 2 0.02
158 123 0.98
ACGTcount: A:0.20, C:0.28, G:0.31, T:0.21
Consensus pattern (158 bp):
GGACAGAGGGTTGCGACAGCAGAATCAACAGCACGCAGGGGGGACTGGGCCGATCCCCGGCTTAC
GCATTCCACCTCTCCGACCGGCTGAGCACCCGCACACCCATTTCATAGGTTGGCTTAGGCATAGG
GAGTTCATTCCATATCTAAACCCCAGTG
Found at i:15888386 original size:26 final size:26
Alignment explanation
Indices: 15888337--15888386 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
15888327 TGGCTTAGGC
* *
15888337 ATATGGAGTTCATTCCATGTCTAAGT
1 ATATGAAGTTCATTCCATGCCTAAGT
15888363 ATATGAAGTTCATTCCCA-GCCTAA
1 ATATGAAGTTCATT-CCATGCCTAA
15888387 AAGTTTGAGC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 18 0.86
27 3 0.14
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.34
Consensus pattern (26 bp):
ATATGAAGTTCATTCCATGCCTAAGT
Found at i:15888594 original size:26 final size:26
Alignment explanation
Indices: 15888564--15888616 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15888554 GTTGGCTTAG
15888564 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
15888590 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15888616 G
1 G
15888617 AGTTTGAGCT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15889606 original size:26 final size:26
Alignment explanation
Indices: 15889570--15889622 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15889560 GTTGGCTTAG
*
15889570 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
15889596 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15889622 G
1 G
15889623 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15889609 original size:184 final size:182
Alignment explanation
Indices: 15889300--15889873 Score: 637
Period size: 184 Copynumber: 3.1 Consensus size: 182
15889290 CAGAATGCAG
* * * *
15889300 GGGGGGATCGGGCCGATCCCCAGCTTACGCATTCTTCCTCTCC-GACTGGCTGAGTGCCCGCACG
1 GGGGGGA-CCGGCCGATCCCCAGCTTACGCATTCTGCCTCTCCAGTC-GGCTGAGCGCCCGCACG
* * * *
15889364 CTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCA-TCCCTAGTTTAAGCATACGGAGTTCATC
64 CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCATACGGAGTTCATT
* *
15889428 CCCAGTCTAAAATC-AGACCGAAACGAGGGTTGCGACAGTAGGATTGA-TAGCACGCA
128 CCCAGTCTAAGATCGA-ACCGAAACGAGGGTTGCGACAGCA-GA-TGACTAGCACGCA
* * ** *
15889484 GGGGGGACCGTGCTGATCCCCAGCTTACGCATTCTGCCTCTCCAGTCAGCTGAGCGCTTGCACAC
1 GGGGGGACCG-GCCGATCCCCAGCTTACGCATTCTGCCTCTCCAGTCGGCTGAGCGCCCGCACGC
* * * *
15889549 CCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCC
65 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCC
* * * * *
15889614 CAGTCTAAGATCGAACCG-GACTGAGGGTTACGGCAGCA-A-GACCAGTA-GCA
130 CAGTCTAAGATCGAACCGAAAC-GAGGGTTGCGACAGCAGATGACTAGCACGCA
* *
15889664 GGGGGGACCAGGCCGATCCCCAGCTTATGCATTCTGCCTCTCCAGTCGGCTGAACGCCCGCACGC
1 GGGGGGACC-GGCCGATCCCCAGCTTACGCATTCTGCCTCTCCAGTCGGCTGAGCGCCCGCACGC
* * *
15889729 TCATGTCATGAGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGCATACGGAGTTCATTC
65 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCATACGGAGTTCATTC
* * * *
15889793 TCAGTCTAAGATCGAACCGAACCAAGGGTTGCGACAGCAAGATCGACT-GCACGTA
129 CCAGTCTAAGATCGAACCGAAACGAGGGTTGCGACAGC-AGAT-GACTAGCACGCA
* * *
15889848 GGGGGGACTGGGCCTATCCCCGGCTT
1 GGGGGGAC-CGGCCGATCCCCAGCTT
15889874 GCGGAGTTCA
Statistics
Matches: 325, Mismatches: 50, Indels: 30
0.80 0.12 0.07
Matches are distributed among these distances:
180 144 0.44
181 9 0.03
182 2 0.01
183 6 0.02
184 157 0.48
185 7 0.02
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.23
Consensus pattern (182 bp):
GGGGGGACCGGCCGATCCCCAGCTTACGCATTCTGCCTCTCCAGTCGGCTGAGCGCCCGCACGCT
CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCC
AGTCTAAGATCGAACCGAAACGAGGGTTGCGACAGCAGATGACTAGCACGCA
Found at i:15889754 original size:180 final size:178
Alignment explanation
Indices: 15889300--15889834 Score: 621
Period size: 180 Copynumber: 2.9 Consensus size: 178
15889290 CAGAATGCAG
* * * *
15889300 GGGGGGATCGGGCCGATCCCCAGCTTACGCATTCTTCCTCTCC-GACTGGCTGAGTGCCCGCACG
1 GGGGGGA-CCGGCCGATCCCCAGCTTACGCATTCTGCCTCTCCAGTC-GGCTGAGCGCCCGCACG
* * * *
15889364 CTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCA-TCCCTAGTTTAAGCATACGGAGTTCATC
64 CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCATACGGAGTTCATT
* * *
15889428 CCCAGTCTAAAATC-AGACCGAAACGAGGGTTGCGACAGTAGGATTGATAGCACGCA
128 CCCAGTCTAAGATCGA-ACCG-AACGAGGGTTGCGACAGCA--A--GACAGCACGCA
* * ** *
15889484 GGGGGGACCGTGCTGATCCCCAGCTTACGCATTCTGCCTCTCCAGTCAGCTGAGCGCTTGCACAC
1 GGGGGGACCG-GCCGATCCCCAGCTTACGCATTCTGCCTCTCCAGTCGGCTGAGCGCCCGCACGC
* * * *
15889549 CCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCC
65 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCC
* * * *
15889614 CAGTCTAAGATCGAACCGGACTGAGGGTTACGGCAGCAAGACCAGTA-GCA
130 CAGTCTAAGATCGAACCGAAC-GAGGGTTGCGACAGCAAGA-CAGCACGCA
* *
15889664 GGGGGGACCAGGCCGATCCCCAGCTTATGCATTCTGCCTCTCCAGTCGGCTGAACGCCCGCACGC
1 GGGGGGACC-GGCCGATCCCCAGCTTACGCATTCTGCCTCTCCAGTCGGCTGAGCGCCCGCACGC
* * *
15889729 TCATGTCATGAGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGCATACGGAGTTCATTC
65 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCATACGGAGTTCATTC
* *
15889793 TCAGTCTAAGATCGAACCGAACCAAGGGTTGCGACAGCAAGA
129 CCAGTCTAAGATCGAACCGAA-CGAGGGTTGCGACAGCAAGA
15889835 TCGACTGCAC
Statistics
Matches: 299, Mismatches: 43, Indels: 22
0.82 0.12 0.06
Matches are distributed among these distances:
180 149 0.50
181 8 0.03
182 1 0.00
183 4 0.01
184 130 0.43
185 7 0.02
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.23
Consensus pattern (178 bp):
GGGGGGACCGGCCGATCCCCAGCTTACGCATTCTGCCTCTCCAGTCGGCTGAGCGCCCGCACGCT
CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCC
AGTCTAAGATCGAACCGAACGAGGGTTGCGACAGCAAGACAGCACGCA
Found at i:15889779 original size:26 final size:26
Alignment explanation
Indices: 15889750--15889802 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15889740 GTTGACTTAG
15889750 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15889776 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15889802 G
1 G
15889803 ATCGAACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15889990 original size:11 final size:11
Alignment explanation
Indices: 15889974--15889998 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
15889964 ACCATTTTCG
15889974 GAGCATCGCCA
1 GAGCATCGCCA
15889985 GAGCATCGCCA
1 GAGCATCGCCA
15889996 GAG
1 GAG
15889999 AGCCAAACCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.32, G:0.32, T:0.08
Consensus pattern (11 bp):
GAGCATCGCCA
Found at i:15890614 original size:25 final size:26
Alignment explanation
Indices: 15890579--15890631 Score: 81
Period size: 25 Copynumber: 2.1 Consensus size: 26
15890569 GTAGACCTAG
15890579 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
15890605 GCAT-CGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
15890630 GC
1 GC
15890632 TCAGATTGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 21 0.84
26 4 0.16
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:15891095 original size:158 final size:159
Alignment explanation
Indices: 15890668--15891119 Score: 433
Period size: 159 Copynumber: 2.9 Consensus size: 159
15890658 CAGGACCAGC
* * **
15890668 AGTAGGATCGACAGCACGCAGGGGGGATCGGGTCGATCCCCGGTTTGCGCATTCTGCCTCTTCGG
1 AGTAGGATCGACAGCACGCAAGGGGGATC-GGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGG
* * * *
15890733 TCGACTGAGCGCCCGCACTC-CCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCA-TTCCATGT
65 ACGACTGAGCGCCCGCACGCTCGATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTTCCATGT
* *
15890796 CTAAGCCCCAGCTAGACCGAGGGTTGTGGT
130 CTAAGCACCAGCTAGAACGAGGGTTGTGGT
* * * ** * * * * *
15890826 AATGGGACCGACAGCACATAGAGGGGGATCGGGCTAACCCCCAGCTTGCGCATTAC-GCCTCGTC
1 AGTAGGATCGACAGCACGCA-AGGGGGATCGGCCGATCCCCGA-CTTGCGCATT-CTGCCTCTTC
* * * * * *
15890890 -GACTGCCTCAGCGCCTGCATGCTCG-TTTCGTGGGTTGACTTATGCATACGGAGTTCATTTCCA
63 GGAC-GACTGAGCGCCCGCACGCTCGATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTTCCA
* * *
15890953 -GTTTAAG-ATCAGACT-GAAATGAGGGTTGTGGT
127 TGTCTAAGCACCAG-CTAG-AACGAGGGTTGTGGT
*
15890985 AGTAGGATC-AGCAGCACGCAAGGGGGATCGAGCCGATCCTCGACTTGCGCATTCTGCCTCTTCG
1 AGTAGGATCGA-CAGCACGCAAGGGGGATCG-GCCGATCCCCGACTTGCGCATTCTGCCTCTTCG
* * *
15891049 G-CCAGCTGAGCGCCCGCACGCTCGATTT-ATGGGTTGGCTTAGGCATACGAAGTTCA-TTCCAT
64 GACGA-CTGAGCGCCCGCACGCTCGATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTTCCAT
15891111 GTCTAAGCA
128 GTCTAAGCA
15891120 TACAGAGTTC
Statistics
Matches: 229, Mismatches: 49, Indels: 31
0.74 0.16 0.10
Matches are distributed among these distances:
157 6 0.03
158 104 0.45
159 112 0.49
160 7 0.03
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (159 bp):
AGTAGGATCGACAGCACGCAAGGGGGATCGGCCGATCCCCGACTTGCGCATTCTGCCTCTTCGGA
CGACTGAGCGCCCGCACGCTCGATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTTCCATGTC
TAAGCACCAGCTAGAACGAGGGTTGTGGT
Found at i:15891141 original size:26 final size:26
Alignment explanation
Indices: 15891091--15891142 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
15891081 GTTGGCTTAG
*
15891091 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATATCTAA
15891117 GCATAC-AGAGTTCATTCCCA-ATCTAA
1 GCATACGA-AGTTCATT-CCATATCTAA
15891143 TATTTTGAGC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
25 1 0.04
26 19 0.83
27 3 0.13
ACGTcount: A:0.33, C:0.25, G:0.13, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATATCTAA
Found at i:15891838 original size:26 final size:26
Alignment explanation
Indices: 15891802--15891855 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
15891792 GTTGACTTAG
*
15891802 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
15891828 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
15891854 GC
1 GC
15891856 TCAGACCGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.24
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:15892341 original size:26 final size:26
Alignment explanation
Indices: 15892307--15892358 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15892297 TGGCTTAGGC
*
15892307 ATACGGAGTTCATT-CCATGTCTAAGA
1 ATACAGAGTTCATTCCCA-GTCTAAGA
15892333 ATACAGAGTTCATTCCCAGTCTAAGA
1 ATACAGAGTTCATTCCCAGTCTAAGA
15892359 TTAGACCAGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGA
Found at i:15893216 original size:26 final size:26
Alignment explanation
Indices: 15893186--15893238 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15893176 GTTGGCTTAC
15893186 GCATACGGAGTTCATT-CTATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
15893212 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
15893238 G
1 G
15893239 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:15894440 original size:26 final size:26
Alignment explanation
Indices: 15894410--15894462 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15894400 GTTGGCATAG
*
15894410 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
15894436 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15894462 G
1 G
15894463 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15895746 original size:26 final size:26
Alignment explanation
Indices: 15895698--15895748 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
15895688 TGACTTATTC
* *
15895698 ATATGGAGTTCATCCCTAGTCTAAGT
1 ATATAGAGTTCATCCCTAATCTAAGT
15895724 ATATAGAGTTCATTCCC-AATCTAAG
1 ATATAGAGTTCA-TCCCTAATCTAAG
15895749 ATCAGACCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (26 bp):
ATATAGAGTTCATCCCTAATCTAAGT
Found at i:15896083 original size:159 final size:157
Alignment explanation
Indices: 15895728--15896085 Score: 373
Period size: 159 Copynumber: 2.3 Consensus size: 157
15895718 CTAAGTATAT
* * ** *
15895728 AGAGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTTTGGCAGCAGGATTGACAGTACGC
1 AGAGTTCATTCCCAGTCTAAGATCAGACC-GACCGAGGGTTGTGGCAGCAGGACCGACAGCACGC
* * * *
15895793 AAGGGGGACTGGATCGATCCCCGACTTGCGCATTCAAGCTCTTCGGCAAGCTGAGCGCCCGCACG
65 AAGGGGGACCGGATCGATCCCCGACTTGCGCATTCAAGCTCTCCGGCAAGCTCAGCGCCCGAACG
* *
15895858 CCCGTTTCGTGGGTTGGCTGAGGCATAG
130 CCCGTTTCATGGGTTGACTGAGGCATAG
* ** * * *
15895886 GGAGTTCATT-CCATGTCTAAGCCCCAGTCCGACTGAGGGTTGTGGCAGCGGGACCGACAGCACG
1 AGAGTTCATTCCCA-GTCTAAG-ATCAGACCGACCGAGGGTTGTGGCAGCAGGACCGACAGCACG
* * * **
15895950 CAGAGGGGGACCGGATCGATCCCC-AGTTTGTGCATT-ATGCCTCTCCGGCCGGCTCAGCGCCCG
64 CA-AGGGGGACCGGATCGATCCCCGA-CTTGCGCATTCAAG-CTCTCCGGCAAGCTCAGCGCCCG
* * *
15896013 AACGCTCGTTTCATTGGTTGACTTAGGCAT-G
126 AACGCCCGTTTCATGGGTTGACTGAGGCATAG
* *
15896044 CAGAGTTCATTCCCAGTCTAAGATCGGAACGAACCGAGGGTT
1 -AGAGTTCATTCCCAGTCTAAGATCAGACCG-ACCGAGGGTT
15896086 ACTGTAGTAG
Statistics
Matches: 160, Mismatches: 32, Indels: 15
0.77 0.15 0.07
Matches are distributed among these distances:
157 3 0.02
158 53 0.33
159 101 0.63
160 3 0.02
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (157 bp):
AGAGTTCATTCCCAGTCTAAGATCAGACCGACCGAGGGTTGTGGCAGCAGGACCGACAGCACGCA
AGGGGGACCGGATCGATCCCCGACTTGCGCATTCAAGCTCTCCGGCAAGCTCAGCGCCCGAACGC
CCGTTTCATGGGTTGACTGAGGCATAG
Found at i:15896226 original size:26 final size:26
Alignment explanation
Indices: 15896197--15896249 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15896187 GTTGGCTTAG
*
15896197 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGCAGTTCATTCCATGTCTAA
*
15896223 GCATACGCAGTTCATTCCCTGTCTAA
1 GCATACGCAGTTCATTCCATGTCTAA
15896249 G
1 G
15896250 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGCAGTTCATTCCATGTCTAA
Found at i:15896435 original size:26 final size:26
Alignment explanation
Indices: 15896406--15896458 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15896396 GTTGACATAG
15896406 GCATACAGAGTTCATCCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAGTCTAA
* *
15896432 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAGTCTAA
15896458 G
1 G
15896459 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAGTCTAA
Found at i:15897490 original size:26 final size:26
Alignment explanation
Indices: 15897452--15897504 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15897442 GTTGACTTAG
* *
15897452 GCATACGATGTTCATTCGCTGTCTAA
1 GCATACGATGTTCATTCCCAGTCTAA
15897478 GCATACAGA-GTTCATTCCCAGTCTAA
1 GCATAC-GATGTTCATTCCCAGTCTAA
15897504 G
1 G
15897505 ATCAGATAGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGATGTTCATTCCCAGTCTAA
Found at i:15897686 original size:26 final size:26
Alignment explanation
Indices: 15897636--15897687 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15897626 GTTGGCTTAG
*
15897636 GCATACGGAGTTCATTTCCTATCTAA
1 GCATACGGAGTTCATTTCCCATCTAA
*
15897662 GCATATGGAGTTCA-TTCCCAGTCTAA
1 GCATACGGAGTTCATTTCCCA-TCTAA
15897688 TAGTTTGAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 5 0.22
26 18 0.78
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (26 bp):
GCATACGGAGTTCATTTCCCATCTAA
Found at i:15898721 original size:134 final size:135
Alignment explanation
Indices: 15898572--15898819 Score: 320
Period size: 134 Copynumber: 1.8 Consensus size: 135
15898562 TAGCGGGACT
* * * * * ***
15898572 GACAGCATGCAAAGGGGGACCG-GATCGATCCCCGGCTTACACATTATGCCTCTCCGGTTGACTC
1 GACAGCACGCAAAGGGGGACCGAG-CCAATCCCCGACTTACACATTATACCTCTCCGACCGACTC
*
15898636 AGTGCCTGAACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCAGT
65 AGTGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCAGT
15898701 CGGATC
130 CGGATC
* * * * *
15898707 GACAGCACGC-AAGGGGGACCGAGCCAATCCCCGACTTGCGCATTCTACCTCTCCGACCGATTGA
1 GACAGCACGCAAAGGGGGACCGAGCCAATCCCCGACTTACACATTATACCTCTCCGACCGACTCA
* * *
15898771 GTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT
66 GTGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
15898820 ACATGTCAAA
Statistics
Matches: 95, Mismatches: 17, Indels: 3
0.83 0.15 0.03
Matches are distributed among these distances:
134 85 0.89
135 10 0.11
ACGTcount: A:0.20, C:0.29, G:0.27, T:0.24
Consensus pattern (135 bp):
GACAGCACGCAAAGGGGGACCGAGCCAATCCCCGACTTACACATTATACCTCTCCGACCGACTCA
GTGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCAGTC
GGATC
Found at i:15898882 original size:26 final size:26
Alignment explanation
Indices: 15898804--15898871 Score: 109
Period size: 26 Copynumber: 2.6 Consensus size: 26
15898794 GTTGGCTTAG
*
15898804 GCATACGGAGTTCATTACATGTCAAA
1 GCATACGGAGTTCATTACATGTCTAA
* *
15898830 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTACATGTCTAA
15898856 GCATACGGAGTTCATT
1 GCATACGGAGTTCATT
15898872 TTCAGTCTAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTACATGTCTAA
Found at i:15899075 original size:26 final size:26
Alignment explanation
Indices: 15899039--15899091 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15899029 GTTGACTTAG
15899039 GCATACGGAGTTCA-TCTCCAGTCTAA
1 GCATACGGAGTTCATTC-CCAGTCTAA
15899065 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15899091 G
1 G
15899092 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15899539 original size:159 final size:157
Alignment explanation
Indices: 15899142--15899568 Score: 430
Period size: 158 Copynumber: 2.7 Consensus size: 157
15899132 ATGCAGAGGG
* * * * *
15899142 GACCGGGCCAATCCTCGACTTACACATTCTGCCTCTCCGGTCGGCTGAGCGCCCGTACGCCCGTT
1 GACCAGGCCAATCCTCGACTTACGCATTCTGCCTCTCCGGTC-GCTGAGCACCCGAACGCTCGTT
* * *
15899207 TCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCGAACCGAGTGTTGT
65 TCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACTAGTCGAACCGAGGGTTGT
* * * *
15899272 GGCAGCGGGACTTGCAGCACGCAGATGG
130 GGCAGCAGGACTCGCAACACGCAGATGA
* * * * * * * * * *
15899300 GACCGGGCTAATCCCCGACTTGCGCATTTTGCCTATTCGGCCTGCTCAGCACCCAAACGCTCGTT
1 GACCAGGCCAATCCTCGACTTACGCATTCTGCCTCTCCGGTC-GCTGAGCACCCGAACGCTCGTT
* * * * * *
15899365 TCATGGGTTGACTTAGGCATACGGAGTTCATTCC-TAGTCTAAG-ATTGGATCGGACTGAGGGTT
65 TCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCACTAG-TCGAACCGAGGGTT
**
15899428 GTGGCAGCAGGA-TCGACAACACGTTGGGA-GA
128 GTGGCAGCAGGACTCG-CAACACG--CAGATGA
* * * * *
15899459 GATCAGGCCAGTCCTCGGCTTACGCATTCTGCCTCTCCGGTCGACTGAGCACCGGCACGCTCGTT
1 GACCAGGCCAATCCTCGACTTACGCATTCTGCCTCTCCGGTCG-CTGAGCACCCGAACGCTCGTT
*
15899524 TCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCA
65 TCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
15899569 TATGGAGTTC
Statistics
Matches: 214, Mismatches: 47, Indels: 14
0.78 0.17 0.05
Matches are distributed among these distances:
157 5 0.02
158 118 0.55
159 87 0.41
160 4 0.02
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.25
Consensus pattern (157 bp):
GACCAGGCCAATCCTCGACTTACGCATTCTGCCTCTCCGGTCGCTGAGCACCCGAACGCTCGTTT
CGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACTAGTCGAACCGAGGGTTGTG
GCAGCAGGACTCGCAACACGCAGATGA
Found at i:15899777 original size:26 final size:26
Alignment explanation
Indices: 15899748--15899800 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15899738 GTTGACTTAG
15899748 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* * *
15899774 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
15899800 G
1 G
15899801 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:15899947 original size:710 final size:711
Alignment explanation
Indices: 15898830--15900119 Score: 1682
Period size: 710 Copynumber: 1.8 Consensus size: 711
15898820 ACATGTCAAA
*
15898830 GCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTTTCAGTCTAAGATCAGACCGAAC
1 GCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTTCCAGTCTAAGATCAGACCGAAC
* * * * * *
15898895 CGAGGGTTACGATAGCAGGACCAGTAGCAGGATCGACAGCATGCAGGGGGGATCGAGCCCATCCT
66 CAAGGGTTACGATAGCAAGACCAGCAGCAGGATCGACAGCACGCAGGGAGGATCGAGCCCATCCC
** * * * * *
15898960 CGACTTGTGCATTCTGCCTCTCTGATTGGCCTTTCTGGCCAGCTGAGTGCCCGCACGCTCGTTTT
131 CGACTTGTGCATTCTGCCTCTCTGACCGGCCTCTCCGGCCAGCTGAGCGCCCGCACGCTCATTTC
* *
15899025 GTGGGTTGACTTAGGCATACGGAGTTCATCTCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
196 GTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTA
* * * * *
15899090 AGATCGGACTGGATCAAGGGTTACGATAGCAGGATCGACAGCATGCAGAGGGGACCGGGCCAATC
261 AGATCAGACCGGATCAAGGGTTACGACAGCAGGATCGACAGCACGCAGAGGGGACCAGGCCAATC
* * * * **
15899155 CTCGACTTACACATTCTGCCTCTCCGGTCGGCTGAGCGCCCGTACGCCCGTTTCGTGGGTTGGCT
326 CCCGACTTACACATTCTGCCTCTCCAGTCGACTGAGCGCCCGCACGCCCGTTTAATGGGTTGGCT
* ** *
15899220 TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTC-GAACCGAGTGTTGTGGCAGCGGGACT
391 TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCACCCAG-ACCGAGGGTTGTGGCAGCGGGAC-
* * * * * * * *
15899284 TG-CAGCACGCAGA-TGGGACCGGGCTAATCCCCGACTTGCGCATTTTGCCTATTCGGCCTGCTC
454 CGACAGCACGCAGAGGGGGACCGGGCCAATCCCCGACTTGCACATTCTGCCTATCCGACCGGCTC
* *
15899347 AGCACCCAAACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTG
519 AGCACCCAAACGCTCGTTTCATGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGATTG
15899412 GATCGGACTGAGGGTTGTGGCAGCAGGATCGACAACACGTTGGGAGAGATCAGGCCAGTCCTCGG
584 GATCGGACTGAGGGTTGTGGCAGCAGGATCGACAACACGTTGGGAGAGATCAGGCCAGTCCTCGG
15899477 CTTACGCATTCTGCCTCTCCGGTCGACTGAGCACCGGCACGCTCGTTTCGTGGGTTGGCTTAG
649 CTTACGCATTCTGCCTCTCCGGTCGACTGAGCACCGGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
15899540 GCATAC-GAAGTTCATTCCATGTCTAAGCATATGGAGTTCATTTCCAGTCTAAGATCAGACCGGA
1 GCATACAG-AGTTCATTCCATGTCTAAGCATACGGAGTTCATTTCCAGTCTAAGATCAGACCGAA
* * * * * * * ***
15899604 TCAAGGGTTGCGGTAGCAAGACTAGCAGTC-GGATTGACAGCACGC-GGGAGGCTCGGGGTGATC
65 CCAAGGGTTACGATAGCAAGACCAGCAG-CAGGATCGACAGCACGCAGGGAGGATCGAGCCCATC
* ** *
15899667 CCC-AGCTTGTGCATTCTGCCTCTTTGACCGGCCTCTCCGATC-GACTGAGCGCCCGTACGCTCA
129 CCCGA-CTTGTGCATTCTGCCTCTCTGACCGGCCTCTCCGGCCAG-CTGAGCGCCCGCACGCTCA
*
15899730 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATATGGAGTTCATTCCCAG
192 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCCAG
** * *
15899795 TCTAAGATCAGACCGGATCGGGGGTTACGACAGCAGGATC-AGTAGCACGCAGGGGGGGACCAGG
257 TCTAAGATCAGACCGGATCAAGGGTTACGACAGCAGGATCGA-CAGCACGCA-GAGGGGACCAGG
* * *** * *
15899859 TCGATCCCCGACTTGTGCATTCTGCCTCTTCAGTCGACTGA-CTGCCCGCACGCCTGTTTAATGG
320 CCAATCCCCGACTTACACATTCTGCCTCTCCAGTCGACTGAGC-GCCCGCACGCCCGTTTAATGG
* * *
15899923 GTTGGCTTAGGCATAGGTAGTTCATTCCGTGTCTGAGCCCCACCCAGACCGAGGGTTGTGGCAGC
384 GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCACCCAGACCGAGGGTTGTGGCAGC
* ** * *
15899988 GGGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCTTGGCTTGCACATTCTGCCTCTCCGACC
449 GGGACCGACAGCACGCAGAGGGGGACCGGGCCAATCCCCGACTTGCACATTCTGCCTATCCGACC
* * ** * *
15900053 GGCTGAGCACCCACACGCTCGTTTTGTGGGTTGGCTTAAGCGTACGGAGTTCATTCCCAGTCTAA
514 GGCTCAGCACCCAAACGCTCGTTTCATGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAA
15900118 GA
579 GA
15900120 GTTTGAGCAA
Statistics
Matches: 487, Mismatches: 83, Indels: 19
0.83 0.14 0.03
Matches are distributed among these distances:
708 3 0.01
709 166 0.34
710 224 0.46
711 94 0.19
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (711 bp):
GCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTTCCAGTCTAAGATCAGACCGAAC
CAAGGGTTACGATAGCAAGACCAGCAGCAGGATCGACAGCACGCAGGGAGGATCGAGCCCATCCC
CGACTTGTGCATTCTGCCTCTCTGACCGGCCTCTCCGGCCAGCTGAGCGCCCGCACGCTCATTTC
GTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTA
AGATCAGACCGGATCAAGGGTTACGACAGCAGGATCGACAGCACGCAGAGGGGACCAGGCCAATC
CCCGACTTACACATTCTGCCTCTCCAGTCGACTGAGCGCCCGCACGCCCGTTTAATGGGTTGGCT
TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCACCCAGACCGAGGGTTGTGGCAGCGGGACCG
ACAGCACGCAGAGGGGGACCGGGCCAATCCCCGACTTGCACATTCTGCCTATCCGACCGGCTCAG
CACCCAAACGCTCGTTTCATGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGA
TCGGACTGAGGGTTGTGGCAGCAGGATCGACAACACGTTGGGAGAGATCAGGCCAGTCCTCGGCT
TACGCATTCTGCCTCTCCGGTCGACTGAGCACCGGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:15901145 original size:159 final size:159
Alignment explanation
Indices: 15900953--15901317 Score: 420
Period size: 159 Copynumber: 2.3 Consensus size: 159
15900943 CCAAACGTTT
* * * *
15900953 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCA-GTCTAAG-ATCAGATC-GAACCG-A
1 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCA-TTCCATGTCTAAGCCTAAG-CCAG-A-CGAA
* * * ** *
15901014 GGGTTATGGTAGCAGGATCGACAGCA-AGCA-AGGGGGGACCGGGTCGGTCCCTGGT-TTGCCCA
62 GGGTTATGGCAGCAGGACCGACAGCACA-CAGA-GGGGGACCGGGCCGAACCC-CGTCTTGCCCA
* *
15901076 TTCTGCCTCTCCGACCGGCTGAGCGCCCGTACGCCC
124 TTCTGCCTCTCCGACCGACTGAGCGCCCGCACGCCC
* *
15901112 GTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCTAAGCCAGACGAAGGGT
1 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCTAAGCCAGACGAAGGGT
* * * * *
15901177 TGTGGCAGCTGGACCGGCAGCACACAGAGGGGGATCGGGCCGAACCCCGTCTTGCGCATTCTGCC
66 TATGGCAGCAGGACCGACAGCACACAGAGGGGGACCGGGCCGAACCCCGTCTTGCCCATTCTGCC
**
15901242 TCTCCGACCGACTGAGCGCCCGCACGTTC
131 TCTCCGACCGACTGAGCGCCCGCACGCCC
*
15901271 ATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
15901318 ATACAGAGTT
Statistics
Matches: 175, Mismatches: 24, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
158 9 0.05
159 160 0.91
160 6 0.03
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (159 bp):
GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCTAAGCCAGACGAAGGGT
TATGGCAGCAGGACCGACAGCACACAGAGGGGGACCGGGCCGAACCCCGTCTTGCCCATTCTGCC
TCTCCGACCGACTGAGCGCCCGCACGCCC
Found at i:15901326 original size:26 final size:26
Alignment explanation
Indices: 15901290--15901342 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15901280 GTTGGCTTAG
*
15901290 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
15901316 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15901342 G
1 G
15901343 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15902405 original size:26 final size:26
Alignment explanation
Indices: 15902368--15902420 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15902358 GTTGGCTTAG
* *
15902368 GCATACGGAGTTGATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
15902394 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15902420 G
1 G
15902421 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15903468 original size:26 final size:26
Alignment explanation
Indices: 15903431--15903483 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15903421 GTTGGCTTAG
* *
15903431 GCATACGGAGTTGATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
15903457 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15903483 G
1 G
15903484 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15904877 original size:26 final size:26
Alignment explanation
Indices: 15904847--15904899 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15904837 GTTGGCTTAG
*
15904847 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
15904873 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15904899 G
1 G
15904900 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15904918 original size:197 final size:195
Alignment explanation
Indices: 15904542--15905070 Score: 747
Period size: 197 Copynumber: 2.7 Consensus size: 195
15904532 GAGGGTAGTG
* * ** * *
15904542 GCAGTAGGATCGACAGCACGTAGGAGGGACTGGGTCGATCCCTAGC-TTGCACTTTCTACCTCTC
1 GCAGTAGGATCGACAACACGTAGGGGGGACCAGATCGATCCCTGGCTTTGCA--TTCTACCTCTC
** *
15904606 CGGTCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
64 CGACCGGCTGAGCGCCCGTACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
**
15904671 TCAAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGGCCGAGGGTTACGGTAGCAGGAC
129 TCAAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGGCCGAGGGTTACGGTAGCAGGAC
15904736 CA
194 CA
*
15904738 GCAGTAGGATCGACAACACGTAAGGGGGGACCAGATCGATCCCTGGCTTATGCATTCTGCCTCTC
1 GCAGTAGGATCGACAACACGT-AGGGGGGACCAGATCGATCCCTGGCTT-TGCATTCTACCTCTC
* * *
15904803 CGACCGACTGAGCACCCGTATGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
64 CGACCGGCTGAGCGCCCGTACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
* * * *
15904868 TCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGGTCGAGGGTTATGGTAGCAGGAC
129 TCAAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGGCCGAGGGTTACGGTAGCAGGAC
15904933 CA
194 CA
* * * * *
15904935 GTAGTAGGATCAACAACACGTAGGGGGGA-CTGAGCCGATCCCTGGCTTGTGCATTCTACCTCTT
1 GCAGTAGGATCGACAACACGTAGGGGGGACCAGA-TCGATCCCTGGCTT-TGCATTCTACCTCTC
* * *
15904999 CGACCGGTTGAGCGCCCGTACGCTCATTTCATGGGTTGGCTTAGGCATACGAAGTTCATTTCATG
64 CGACCGGCTGAGCGCCCGTACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG
15905064 TCAAAGC
129 TCAAAGC
15905071 CCCAACCAGA
Statistics
Matches: 296, Mismatches: 33, Indels: 8
0.88 0.10 0.02
Matches are distributed among these distances:
195 3 0.01
196 119 0.40
197 169 0.57
198 1 0.00
199 4 0.01
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.25
Consensus pattern (195 bp):
GCAGTAGGATCGACAACACGTAGGGGGGACCAGATCGATCCCTGGCTTTGCATTCTACCTCTCCG
ACCGGCTGAGCGCCCGTACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
AAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGGCCGAGGGTTACGGTAGCAGGACCA
Found at i:15905253 original size:26 final size:26
Alignment explanation
Indices: 15905223--15905278 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
15905213 TGGGTTGACT
*
15905223 TAAGCATACGGAGTTCATTCCCATTC
1 TAAGCATACGGAGTTCATTCCCAGTC
*
15905249 TAAGCATACGGAGTTCATTCCTAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
15905275 TAAG
1 TAAG
15905279 ATCAGATCGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:15906184 original size:355 final size:355
Alignment explanation
Indices: 15905642--15906331 Score: 907
Period size: 355 Copynumber: 1.9 Consensus size: 355
15905632 AGCACGGAAG
** * * * * * *
15905642 GGGGGACCGGGCTGATCCCTGGCTTGTGCATTCTACCTCTCCGACCGGTTGAGCGCCCGTACGTT
1 GGGGGACCGGGCTGATCCCTAACTTGCGCATTATACCTCTCCGACCGGCTGAGCACCCGCACGCT
* * ** * * * * *
15905707 CGTTTCGTGTTTTGGCTTACGCATTCGGAGTTCATTCCATGTTTAAGCATACAGAGCTCATTCCC
66 CATTTCATGGGTTGACTTAAGCATACGGAGTTCATCCCATGTCTAAGCATACAGAGCTCATTCCC
* * * *
15905772 AGTCTAAGATCAGACCGGGCTAAGAGTTGCAGCAGTAGGATCAACAGCACGCAGGGGGGACTGAG
131 AATCTAAGATCAGACCGGACCAAGAGTTGCAGCAGTAAGATCAACAGCACGCAGGGGGGACTGAG
*** * *
15905837 TTGATCCCCGACTTTCACATTCTGCCTCTCCGACCAGCTGAGCACCCGTACACTCATTTCATGGC
196 CCAATCCCCGACTTGCACATTCTGCCTCTCCGACCAGCTGAGCACCCGCACACTCATTTCATGGC
*
15905902 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCGAGGGTTGTGGCAGTA
261 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGTA
15905967 GGACCGACAGTGGGATCGATAGCACATAGA
326 GGACCGACAGTGGGATCGATAGCACATAGA
* * *
15905997 GGGGGATCGGGCTGATCCCTAACTTGCGCATTATGCCTCTTCGACCGGCTGAGCACCCGCACGCT
1 GGGGGACCGGGCTGATCCCTAACTTGCGCATTATACCTCTCCGACCGGCTGAGCACCCGCACGCT
* * *
15906062 CATTTCATGGGTTGACTTAAGCATACGGAGTTTATCCC-TAGTCTAAGCATACAGAGTTCCTTCC
66 CATTTCATGGGTTGACTTAAGCATACGGAGTTCATCCCAT-GTCTAAGCATACAGAGCTCATTCC
* * * *
15906126 CAATCTAAGATCAGATCGGACCAAG-GTTTGCAGTAGTAAGATCGATAGCACGCAGGGGGGACTG
130 CAATCTAAGATCAGACCGGACCAAGAG-TTGCAGCAGTAAGATCAACAGCACGCAGGGGGGACTG
* * * * * * * * *
15906190 GGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGATCGCTCGCACGCTCGTTTCATG
194 AGCCAATCCCCGACTTGCACATTCTGCCTCTCCGACCAGCTGAGCACCCGCACACTCATTTCATG
* *
15906255 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAG
259 GCTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAG
*
15906320 TGGGACCGACAG
324 TAGGACCGACAG
15906332 CACGTAGAGG
Statistics
Matches: 284, Mismatches: 49, Indels: 4
0.84 0.15 0.01
Matches are distributed among these distances:
354 2 0.01
355 282 0.99
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (355 bp):
GGGGGACCGGGCTGATCCCTAACTTGCGCATTATACCTCTCCGACCGGCTGAGCACCCGCACGCT
CATTTCATGGGTTGACTTAAGCATACGGAGTTCATCCCATGTCTAAGCATACAGAGCTCATTCCC
AATCTAAGATCAGACCGGACCAAGAGTTGCAGCAGTAAGATCAACAGCACGCAGGGGGGACTGAG
CCAATCCCCGACTTGCACATTCTGCCTCTCCGACCAGCTGAGCACCCGCACACTCATTTCATGGC
TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGTA
GGACCGACAGTGGGATCGATAGCACATAGA
Found at i:15906414 original size:159 final size:158
Alignment explanation
Indices: 15906195--15906529 Score: 386
Period size: 159 Copynumber: 2.1 Consensus size: 158
15906185 GACTGGGCCA
* * * * *
15906195 ATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGATCGCTCGCACGCTCGTTTCATGGGTTG
1 ATCCCCGGCTTGCACATTATGCCTCTCCGACCAGCTCATCGCCCGCACGCTCGTTTCATGGGTTG
* * * * * **
15906260 GCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGTGGG
66 ACTTAGGCATACGGAGTTCATTCCCA-ATCTAAGACCCA-CCGGACCGAGGGTTGCGGCAGCAGG
*
15906324 ACCGACAGCACGTAGAGGGGGATCGGGTCG
129 ACCGACAGCACGTAGAGGGGGATCGAGTCG
* * * *
15906354 ATCCCCAGCTTGCACATTATGCCTCTCCGACCAGTTCAGT-GCCCGCATGCTTGTTTCATGGGTT
1 ATCCCCGGCTTGCACATTATGCCTCTCCGACCAGCTCA-TCGCCCGCACGCTCGTTTCATGGGTT
* *** * * *
15906418 GACTTATGCATACGGAGTTCATTCCCAATCTAAGATGGATCGGATCGAGGGTTGCGGTAGCAGGA
65 GACTTAGGCATACGGAGTTCATTCCCAATCTAAGACCCACCGGACCGAGGGTTGCGGCAGCAGGA
* *
15906483 TCGACAGCACGTAGGGGGGGATCGAGTCG
130 CCGACAGCACGTAGAGGGGGATCGAGTCG
*
15906512 ATCCCTGGCTTGCACATT
1 ATCCCCGGCTTGCACATT
15906530 CTACCTTTCC
Statistics
Matches: 146, Mismatches: 28, Indels: 5
0.82 0.16 0.03
Matches are distributed among these distances:
158 62 0.42
159 80 0.55
160 4 0.03
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
ATCCCCGGCTTGCACATTATGCCTCTCCGACCAGCTCATCGCCCGCACGCTCGTTTCATGGGTTG
ACTTAGGCATACGGAGTTCATTCCCAATCTAAGACCCACCGGACCGAGGGTTGCGGCAGCAGGAC
CGACAGCACGTAGAGGGGGATCGAGTCG
Found at i:15906556 original size:158 final size:158
Alignment explanation
Indices: 15906108--15906576 Score: 469
Period size: 158 Copynumber: 3.0 Consensus size: 158
15906098 CCTAGTCTAA
* * * * * * *
15906108 GCATACAGAGTTCCTTCCCAATCTAAGATCAGATCGGACCAAGGTTTGCAGTAGTAAGATCGATA
1 GCATACGGAGTTCATTCCCAATCTAAGAT-AGATCGGACCGAGGGTTGCGGTAGTAGGATCGACA
* * * * * *
15906173 GCACGCA-GGGGGGA-CTGGGCCAATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGATCG
65 GCACGTAGGGGGGGATC-GGGTCGATCCCCGGCTTGCACATTCTGCCTCTCCGACCGGTTGAGCG
* *
15906236 CTCGCACGCTCGTTTCATGGGTTGGCTTAG
129 CCCGCACGCTCGTTTCATGGGTTGACTTAG
* * ** * * * * *
15906266 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACCGAGGGTTGTGGCAGTGGGACCGA
1 GCATACGGAGTTCATTCCCA-ATCTAAG--ATAGATCGGACCGAGGGTTGCGGTAGTAGGATCGA
* * * * * *
15906329 CAGCACGTAGAGGGGGATCGGGTCGATCCCCAGCTTGCACATTATGCCTCTCCGACCAGTTCAGT
63 CAGCACGTAGGGGGGGATCGGGTCGATCCCCGGCTTGCACATTCTGCCTCTCCGACCGGTTGAGC
* * *
15906394 GCCCGCATGCTTGTTTCATGGGTTGACTTAT
128 GCCCGCACGCTCGTTTCATGGGTTGACTTAG
* * *
15906425 GCATACGGAGTTCATTCCCAATCTAAGATGGATCGGATCGAGGGTTGCGGTAGCAGGATCGACAG
1 GCATACGGAGTTCATTCCCAATCTAAGATAGATCGGACCGAGGGTTGCGGTAGTAGGATCGACAG
* * * * **
15906490 CACGTAGGGGGGGATCGAGTCGATCCCTGGCTTGCACATTCTACCTTTCCGGTCGGTTGAGCGCC
66 CACGTAGGGGGGGATCGGGTCGATCCCCGGCTTGCACATTCTGCCTCTCCGACCGGTTGAGCGCC
**
15906555 CGCACGCTCGTTTTGTGGGTTG
131 CGCACGCTCGTTTCATGGGTTG
15906577 GTTCCAGTCT
Statistics
Matches: 243, Mismatches: 61, Indels: 14
0.76 0.19 0.04
Matches are distributed among these distances:
157 4 0.02
158 144 0.59
159 91 0.37
160 4 0.02
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAATCTAAGATAGATCGGACCGAGGGTTGCGGTAGTAGGATCGACAG
CACGTAGGGGGGGATCGGGTCGATCCCCGGCTTGCACATTCTGCCTCTCCGACCGGTTGAGCGCC
CGCACGCTCGTTTCATGGGTTGACTTAG
Found at i:15906952 original size:26 final size:26
Alignment explanation
Indices: 15906916--15906968 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15906906 GTTGACTTAG
15906916 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
15906942 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15906968 G
1 G
15906969 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15909381 original size:24 final size:24
Alignment explanation
Indices: 15909354--15909415 Score: 115
Period size: 24 Copynumber: 2.6 Consensus size: 24
15909344 TGAGAACTTG
*
15909354 TGGTCCACTGACCAATGTAGCTCA
1 TGGTCCACTGACCAATGCAGCTCA
15909378 TGGTCCACTGACCAATGCAGCTCA
1 TGGTCCACTGACCAATGCAGCTCA
15909402 TGGTCCACTGACCA
1 TGGTCCACTGACCA
15909416 TCCCGCTTGT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (24 bp):
TGGTCCACTGACCAATGCAGCTCA
Found at i:15911798 original size:26 final size:26
Alignment explanation
Indices: 15911768--15911820 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15911758 GTTGGCTTAG
15911768 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
15911794 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15911820 G
1 G
15911821 ATCGGACTTG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15911997 original size:26 final size:26
Alignment explanation
Indices: 15911967--15912017 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15911957 TGACTTAGGC
*
15911967 ATACGGAGTTCATCCCCAGTCTAAGT
1 ATACGGAGTTCATCCCCAGCCTAAGT
*
15911993 ATACGGAGTTCATTCCCAGCCTAAG
1 ATACGGAGTTCATCCCCAGCCTAAG
15912018 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGCCTAAGT
Found at i:15913069 original size:26 final size:26
Alignment explanation
Indices: 15913033--15913082 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
15913023 GACTTAGGCA
*
15913033 TACGGAGTTCATCCCCAGTCTAAGCG
1 TACGAAGTTCATCCCCAGTCTAAGCG
*
15913059 TACGAAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATCCCCAGTCTAAG
15913083 ATCGGACCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (26 bp):
TACGAAGTTCATCCCCAGTCTAAGCG
Found at i:15913269 original size:25 final size:26
Alignment explanation
Indices: 15913240--15913291 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
15913230 GTTGAATTAG
* *
15913240 GCATACGGAGTTCA-TCCCAGTTTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15913265 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15913291 G
1 G
15913292 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 13 0.54
26 11 0.46
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15915037 original size:26 final size:26
Alignment explanation
Indices: 15915007--15915059 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15914997 GTTGACTTAG
* *
15915007 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAATTCATCCCCAGTCTAA
*
15915033 GCATACAGAATTCATTCCCAGTCTAA
1 GCATACAGAATTCATCCCCAGTCTAA
15915059 G
1 G
15915060 ATCGAAGGGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAATTCATCCCCAGTCTAA
Found at i:15915380 original size:26 final size:26
Alignment explanation
Indices: 15915350--15915402 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15915340 GTTGGCTTAG
15915350 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
15915376 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15915402 G
1 G
15915403 AGTTTAAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15915934 original size:26 final size:26
Alignment explanation
Indices: 15915904--15915956 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15915894 GTTAGCTTAG
15915904 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
15915930 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15915956 G
1 G
15915957 ATCAGATCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15916512 original size:26 final size:26
Alignment explanation
Indices: 15916476--15916528 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15916466 GTTGACTTAG
*
15916476 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
15916502 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
15916528 G
1 G
15916529 ATCGAAACGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:15916710 original size:26 final size:26
Alignment explanation
Indices: 15916680--15916732 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15916670 GTTGACTTAG
*
15916680 GCATACAGAGTTCATCCCCATTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
15916706 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
15916732 G
1 G
15916733 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:15917052 original size:26 final size:26
Alignment explanation
Indices: 15917023--15917075 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15917013 GTTGGCTTAG
15917023 GCATACGGAGTTCACT-CCATGTCTAA
1 GCATACGGAGTTCACTCCCA-GTCTAA
*
15917049 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
15917075 G
1 G
15917076 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:15918019 original size:26 final size:26
Alignment explanation
Indices: 15917968--15918020 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15917958 GTTGGCTTAG
* *
15917968 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGCCTAA
15917994 GCATACAGAGTTCATTCCCA-GCCTAA
1 GCATACAGAGTTCATT-CCATGCCTAA
15918020 G
1 G
15918021 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGCCTAA
Found at i:15918409 original size:26 final size:26
Alignment explanation
Indices: 15918380--15918432 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15918370 GTTGACTTAG
15918380 GCATAC-AGAGTTCATCCCCAGTCTAA
1 GCATACGA-AGTTCATCCCCAGTCTAA
*
15918406 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
15918432 G
1 G
15918433 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:15918463 original size:206 final size:204
Alignment explanation
Indices: 15917955--15918464 Score: 519
Period size: 206 Copynumber: 2.5 Consensus size: 204
15917945 GCTCGTTTTG
* * * *
15917955 TGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATAC-AGAGTTCATTCCCAGCCT
1 TGGGTTGACTTAGGCATACAGAGTTCATCCCCA-GTCTAAGCATACGA-AGTTCATTCCCAGTCT
** * * * * *
15918018 AAGATTGGACCGGA-TCGGGGGTTGCGGCAGCAGGACCAGTAACAGGATCGACAGCACACACCGA
64 AAGATCAGACC-GACT-GAGGGTT-CAGTAGTAGGACCAATAACAGGATCGACAGCACACACCGA
* ** * * *
15918082 AGGACCGGGTCAATCCTCGGCTTACGCATTCTGCCTCTCTGACAGGCCTTTTCGATCGGTTGAGG
126 AGGACCGGCTCAATCCTCGGCTTACGCATTCTGCCTCTCCAACAGGCCTCTCCGATCGGCTGAGG
* *
15918147 ACCCGCATGCTCGT
191 ACCCGCACGCTCAT
* * * * * * *
15918161 TTGGTTGACTTAGGCATACTGAGTTTATCCTCAGTTTAAGCATACGGAGTTCATTCCCAGTCTAG
1 TGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAA
** ** * ** ** *
15918226 GATCAGACCGAACCAAGGGTTGTGATAGTAGGACCAATAGCAGGATCGGTAGCACACAGGGAGGG
66 GATCAGACCG-ACTGAGGGTTCAG-TAGTAGGACCAATAACAGGATCGACAGCACACACCGAAGG
* * *
15918291 ACCAGGCT-GATCC-CTGGCTTACGCATTCTGCCTCTCCAACTGGCCTCTCCTA-CTGGCTGAGG
129 ACC-GGCTCAATCCTC-GGCTTACGCATTCTGCCTCTCCAACAGGCCTCTCCGATC-GGCTGAGG
15918353 ACCCGCACGCTCAT
191 ACCCGCACGCTCAT
15918367 TGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAA
1 TGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAA
15918432 GATCAGACCAGACTGAGGGTTACAGTAGTAGGA
66 GATCAGACC-GACTGAGGGTT-CAGTAGTAGGA
15918465 TCGGCAACAT
Statistics
Matches: 246, Mismatches: 48, Indels: 20
0.78 0.15 0.06
Matches are distributed among these distances:
205 4 0.02
206 235 0.96
207 7 0.03
ACGTcount: A:0.24, C:0.26, G:0.26, T:0.24
Consensus pattern (204 bp):
TGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAA
GATCAGACCGACTGAGGGTTCAGTAGTAGGACCAATAACAGGATCGACAGCACACACCGAAGGAC
CGGCTCAATCCTCGGCTTACGCATTCTGCCTCTCCAACAGGCCTCTCCGATCGGCTGAGGACCCG
CACGCTCAT
Found at i:15918775 original size:26 final size:26
Alignment explanation
Indices: 15918723--15918775 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
15918713 GTTGGCTTAG
* *
15918723 GCATACGGAGTTCACTGCATGTTTAA
1 GCATACGGAGTTCACTCCATGTCTAA
*
15918749 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCACT-CCATGTCTAA
15918775 G
1 G
15918776 AGTTTGAGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCATGTCTAA
Found at i:15919995 original size:26 final size:26
Alignment explanation
Indices: 15919945--15919997 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15919935 GTTGGCTTAG
***
15919945 GCATACGGAGTTCATTCCGTGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
15919971 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
15919997 G
1 G
15919998 ATCGGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:15920158 original size:26 final size:26
Alignment explanation
Indices: 15920129--15920181 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15920119 GTTGACTTAG
* * *
15920129 GCATACGGAGTTGATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCACTCTAA
*
15920155 GCATACAGAGTTCATTCCCACTCTAA
1 GCATACAGAGTTCATCCCCACTCTAA
15920181 G
1 G
15920182 ATCGAACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCACTCTAA
Found at i:15920261 original size:184 final size:181
Alignment explanation
Indices: 15919787--15920327 Score: 512
Period size: 184 Copynumber: 2.9 Consensus size: 181
15919777 GTTGACTTAG
* * * * * *
15919787 GCATACGGAGTTCATTCCCAGTCTAAGATTGGA-TCGGGCCAAGGGTTGCAGTAGCAGGATCGAT
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACT-GGACC-GGGGTTGCAGCAGCAGGATCGGT
* * * *
15919851 AGCACGCAGAGGGGACCGGGCTACTCCCCGACTTGCT-CATTCTGCCTCTCCAATCGCCTGAGTG
64 AGCACGCAG-GGGGACCGGGC-AATCCCTGACTTG-TGCATTCTGCCTCTCCGATCGCCTGAGCG
* * **
15919915 CCCGTACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCGTGTCTAA
126 CCCGTACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
* * * *
15919971 GCATATGGAGTTCATTCCCAATCTAAGATCGGACTGGACTGAGGGTTGCGGCAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACTGGACCG-GGGTTGCAGCAGCAGGATCGGTA
* * * * * ** * * * *
15920036 GCACGTAATGGGGATCGGGCCGAT-CCTCGGCTTACGCATTCTTCCTTTCCGATTGGCTGAGCGC
65 GCACG-CAGGGGGACCGGG-CAATCCCT-GACTTGTGCATTCTGCCTCTCCGATCGCCTGAGCGC
** * * *
15920100 TTGTACGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTGATCCCCAGTCTAA
127 CCGTACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
* * * *
15920155 GCATACAGAGTTCATTCCCACTCTAAGATCGAACTGGACCGGGAGTTGCAGCAGTAGGATCGGTA
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACTGGACCGGG-GTTGCAGCAGCAGGATCGGTA
* ** *
15920220 GCACGCAGGGGAGACCGGGTCAATCCCTGACTTGTGCATTCTGCCTCTCCGGTCGGTTGAGCACC
65 GCACGCAGGGG-GACCGGG-CAATCCCTGACTTGTGCATTCTGCCTCTCCGATCGCCTGAGCGCC
** * * * * *
15920285 CACACGCCCGTTTCATGGGTTGGCTTAGGCATATGGAGTTCAT
128 CGTACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
15920328 TCCATGTCTA
Statistics
Matches: 282, Mismatches: 66, Indels: 18
0.77 0.18 0.05
Matches are distributed among these distances:
183 8 0.03
184 268 0.95
185 6 0.02
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (181 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCGGACTGGACCGGGGTTGCAGCAGCAGGATCGGTAG
CACGCAGGGGGACCGGGCAATCCCTGACTTGTGCATTCTGCCTCTCCGATCGCCTGAGCGCCCGT
ACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
Found at i:15921178 original size:181 final size:181
Alignment explanation
Indices: 15920908--15921343 Score: 486
Period size: 181 Copynumber: 2.4 Consensus size: 181
15920898 CACATGCCCG
* * * *
15920908 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCTACAGAGTTCATTCCTAG
1 TTTCATGGGTTGGCTTAGGCATACGGAG-T-GTTCCATGTCTAAGCATACGGAGTTCATTCCCAG
* * *
15920973 TCTAAGATCAGACCGAACCGAGGGTTACGGCAGCAAGATCGAAAGCATGCAGGGGGGGACCGAGC
64 TCTAAGATCAGACCGAACCGAGGGTTACAGCAGCAAGATCGAAAGCACGCA-GGAGGGACCGAGC
* * ** * * * *
15921038 CGATCCTCGGCTTGTGCATTCTTTCTCTCCTATC-GGCTGAGTACCCGCACGTTCA
128 CGATCCTCGACTTGCGCA-TCTGCCTCTCC-AGCTGGCTAAGCACCCGCACGCTCA
* * *
15921093 TTTCATGGGTTGACTTAGGCATACGG-G-GTTCCATGTGTAAGCATATGGAGTTCATTCCCAGTC
1 TTTCATGGGTTGGCTTAGGCATACGGAGTGTTCCATGTCTAAGCATACGGAGTTCATTCCCAGTC
* * * * * * * *
15921156 TAAGAT-TGAACC-AGATCGAGGGTTGCAGCAGCAGGATCGATAGCACGGAGGAGGGACCGGGTC
66 TAAGATCAG-ACCGA-ACCGAGGGTTACAGCAGCAAGATCGAAAGCACGCAGGAGGGACCGAGCC
* *
15921219 GATCCTCGACTTGCGCATCTGCCTCTTCGGCTGGCTAAGCACCCGCACGCTCA
129 GATCCTCGACTTGCGCATCTGCCTCTCCAGCTGGCTAAGCACCCGCACGCTCA
* *
15921272 TTTCGTGGGTTGGCTTAGGCATACGGAGTTGATTCCATGTCTAAGCATACGGCGTTCATTCCCAG
1 TTTCATGGGTTGGCTTAGGCATACGGAG-TG-TTCCATGTCTAAGCATACGGAGTTCATTCCCAG
15921337 TCTAAGA
64 TCTAAGA
15921344 GTTTGAGCCA
Statistics
Matches: 211, Mismatches: 33, Indels: 16
0.81 0.13 0.06
Matches are distributed among these distances:
178 1 0.00
179 50 0.24
180 29 0.14
181 67 0.32
182 1 0.00
183 37 0.18
184 1 0.00
185 25 0.12
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.26
Consensus pattern (181 bp):
TTTCATGGGTTGGCTTAGGCATACGGAGTGTTCCATGTCTAAGCATACGGAGTTCATTCCCAGTC
TAAGATCAGACCGAACCGAGGGTTACAGCAGCAAGATCGAAAGCACGCAGGAGGGACCGAGCCGA
TCCTCGACTTGCGCATCTGCCTCTCCAGCTGGCTAAGCACCCGCACGCTCA
Found at i:15921332 original size:26 final size:26
Alignment explanation
Indices: 15921290--15921342 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15921280 GTTGGCTTAG
*
15921290 GCATACGGAGTTGATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
15921316 GCATACGGCGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15921342 G
1 G
15921343 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15922050 original size:26 final size:26
Alignment explanation
Indices: 15922014--15922066 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15922004 GTTGACTTAG
15922014 GCATACAGAGTTCA-TCCTCAGTCTAA
1 GCATACAGAGTTCATTCC-CAGTCTAA
*
15922040 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15922066 G
1 G
15922067 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15923750 original size:158 final size:160
Alignment explanation
Indices: 15923096--15923750 Score: 516
Period size: 159 Copynumber: 4.1 Consensus size: 160
15923086 AATCTAAGCG
* * * * *
15923096 TACAGAGTTCATTCCCA-GTCTAAGATCAAACCGGACCGAGGGTTGCGGTAGCAGAATCGACAGC
1 TACAGAGTTCATT-CCATGTCTAAGACCAGACCGGACCGAGGGTTGTGGTAGCAGGACCGACAGC
** * *
15923160 ACGCA-A-AGGGGATCGGGCTGATCCCTGGCTTACGCAGTCTGCCTCTCCGATCAGCTGAGCGCC
65 ACGCACAGAGGGGATCGGGCCAATCCCTGGCTTACGCATTCTGCCTCTCCGATCGGCTGAGCGCC
** * * * *
15923223 CGTAAGCCCATTTCATGGGTTGGCTTAGGGA
130 CACACGCTCGTTTCATGGGTTGGCTTAGGCA
** * * * *
15923254 TAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGCGGGACCGACAGC
1 TACAGAGTTCATTCCATGTCTAAG-ACCAGACCGGACCGAGGGTTGTGGTAGCAGGACCGACAGC
* * ** * ** * *
15923318 ACGCAGAGA-GGGATCGGGCAAATCCCTGGCTTGTGCATTCTACCTCTCCGGCCGACTGAGTGCC
65 ACGCACAGAGGGGATCGGGCCAATCCCTGGCTTACGCATTCTGCCTCTCCGATCGGCTGAGCGCC
* ** *
15923382 CGCACATTCGTTTCGTGGGTTGGCTTAGGCA
130 CACACGCTCGTTTCATGGGTTGGCTTAGGCA
** * * * *
15923413 TAGGGAGTTCATTCCGTGTCTAAGGCCA-AGCCGGACTGAGGGTTGTGGT-GACGGGACCGACAG
1 TACAGAGTTCATTCCATGTCTAAGACCAGA-CCGGACCGAGGGTTGTGGTAG-CAGGACCGACAG
* * * * * * * *
15923476 TA--CACAGAGGGGGACCGGGCCGAT-CCTCGACTTACGGATTATGCCTCTCCGATCGGCTCAAC
64 CACGCACAGA-GGGGATCGGGCCAATCCCT-GGCTTACGCATTCTGCCTCTCCGATCGGCTGAGC
* *
15923538 ACCCGA-ACGCTCGTTTCAT-GGTTGACTTAGGCA
127 GCCC-ACACGCTCGTTTCATGGGTTGGCTTAGGCA
* ** * * * * * *
15923571 TACAAAGTTCATTTTGA-GTCTAAGATCAGATCGGACCGAGGGTTATGGTAGTAGGATCGACGGC
1 TACAGAGTTCA-TTCCATGTCTAAGACCAGACCGGACCGAGGGTTGTGGTAGCAGGACCGACAGC
* * * * * *
15923635 ACGTA-AGACGAGA-CTGGGCCAAT-CCTGGCTTGCGCATTCTGCCTCTCCGATCGGTTGAGTGC
65 ACGCACAGAGGGGATC-GGGCCAATCCCTGGCTTACGCATTCTGCCTCTCCGATCGGCTGAGCGC
15923697 CCACACGCTCGTTTCATGGGTTGGCTTAGGTC-
129 CCACACGCTCGTTTCATGGGTTGGCTTAGG-CA
15923729 TACAGAGTTCATTCCATGTCTA
1 TACAGAGTTCATTCCATGTCTA
15923751 CGTATATGGA
Statistics
Matches: 385, Mismatches: 91, Indels: 42
0.74 0.18 0.08
Matches are distributed among these distances:
156 1 0.00
157 54 0.14
158 152 0.39
159 176 0.46
160 2 0.01
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (160 bp):
TACAGAGTTCATTCCATGTCTAAGACCAGACCGGACCGAGGGTTGTGGTAGCAGGACCGACAGCA
CGCACAGAGGGGATCGGGCCAATCCCTGGCTTACGCATTCTGCCTCTCCGATCGGCTGAGCGCCC
ACACGCTCGTTTCATGGGTTGGCTTAGGCA
Found at i:15924257 original size:26 final size:26
Alignment explanation
Indices: 15924208--15924260 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15924198 GTTAGCTTAG
* *
15924208 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCACGTCTAA
15924234 GCATACAGAGTTCATTGCC-CGTCTAA
1 GCATACAGAGTTCATT-CCACGTCTAA
15924260 G
1 G
15924261 ATTGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCACGTCTAA
Found at i:15924577 original size:483 final size:482
Alignment explanation
Indices: 15923670--15924592 Score: 1183
Period size: 483 Copynumber: 1.9 Consensus size: 482
15923660 TGGCTTGCGC
* * * *
15923670 ATTCTGCCTCTCCGATCGGTTGAGTGCCCACACGCTCGTTTCATGGGTTGGCTTAGGTCTACAGA
1 ATTCTGCCTCTCCGACCGGCTGAGTGCCCACACGCTCATTTCATGGGTTAGCTTAGGTCTACAGA
* * ** * * * * **
15923735 GTTCATTCCATGTCTACGTATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTG
66 GTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAAAGTTG
* * * * *
15923800 TCGCAGTAGGACCAGCAGCAGGATCGACAGCACGCAAGGGGGACAAGGCTGATCCCCGCCTTGCG
131 TCGCAGTAGGACCAGCAGCAGGATCGACAGCACACAAGAGGGACAAGGCCGATCCCAGCCTTACG
* *
15923865 CATTCTGCCTCTCCGGTCGGTTGAGCGCCTGCACGCCCATTCCATCGGTTGGCTTAGGCATAGGG
196 CATTCTGCCTCTCCGGTCGGTTGAGCGCCCGCACACCCATTCCATCGGTTGGCTTAGGCATAGGG
* * *
15923930 AGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGTGGTAACGGGACCGGCAGCACGTAG
261 AGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGTGGCAACGGGACCGACAGCACGCAG
* * * ** *
15923995 AGGGGGACCGGGCCGATCCCCAGCTTGCGCATTATCCTTTTCCGGTGGGCTCAACGCCTGAACGA
326 AGGGGGACCGGGCCGATCCCCAGCATGCACATTATCCTTCTCCACTGGGCTCAACGCCCGAACGA
* *
15924060 TTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATTGGACCGAAG
391 TCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGATTGGACCGAAG
15924125 GTTACGACAACAGGATCGACAGAGCAT
456 GTTACGACAACAGGATCGACAGAGCAT
* * *
15924152 ATTCTGCCTCTCCGACCGGCTGAGTGCCCGCACGCTCATTTCGTGGGTTAGCTTAGG-CATACGG
1 ATTCTGCCTCTCCGACCGGCTGAGTGCCCACACGCTCATTTCATGGGTTAGCTTAGGTC-TACAG
*
15924216 AGTTCATTCCATGTCTAAGCATACAGAGTTCATTGCCC-GTCTAAGATTGGACCAGACCAAAAGT
65 AGTTCATTCCATGTCTAAGCATACAGAGTTCATT-CCCAGTCTAAGATCGGACCAGACCAAAAGT
* * * * *
15924280 TG-CGACAGTATGACCAGCAGCAGGATCGATAGCATACAAGAAGGGACAGGGCCGATCCCAGGCT
129 TGTCG-CAGTAGGACCAGCAGCAGGATCGACAGCACACAAG-AGGGACAAGGCCGATCCCAGCCT
* * * * ** * *
15924344 TACGCATTCTGCCTCTCTGGTCGGTTGAGTGCCCGTACATCTGTTTCATGGGTTGGCTTAGGCAT
192 TACGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCGCACACCCATTCCATCGGTTGGCTTAGGCAT
* * * * * *
15924409 ATGGAGTTCATTCCATGTCTAAGCCCTAGCC-GAATCGAGGGTTGTGGCAGCGGGACTGACAGCA
257 AGGGAGTTCATTCCATGTCTAAGCCCCAACCAG-ACCGAGGGTTGTGGCAACGGGACCGACAGCA
* * ** **
15924473 TGCAGAGGGGGACTGGGCCGATCCCTGGCATGCACATTATGCC-TCTCCAACT-GGCTCAGTGCC
321 CGCAGAGGGGGACCGGGCCGATCCCCAGCATGCACATTAT-CCTTCTCC-ACTGGGCTCAACGCC
*
15924536 CGAACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGAT
384 CGAACGATCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGAT
15924593 TGGACCGGAC
Statistics
Matches: 372, Mismatches: 62, Indels: 13
0.83 0.14 0.03
Matches are distributed among these distances:
481 3 0.01
482 138 0.37
483 228 0.61
484 3 0.01
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.24
Consensus pattern (482 bp):
ATTCTGCCTCTCCGACCGGCTGAGTGCCCACACGCTCATTTCATGGGTTAGCTTAGGTCTACAGA
GTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAAAGTTG
TCGCAGTAGGACCAGCAGCAGGATCGACAGCACACAAGAGGGACAAGGCCGATCCCAGCCTTACG
CATTCTGCCTCTCCGGTCGGTTGAGCGCCCGCACACCCATTCCATCGGTTGGCTTAGGCATAGGG
AGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGTGGCAACGGGACCGACAGCACGCAG
AGGGGGACCGGGCCGATCCCCAGCATGCACATTATCCTTCTCCACTGGGCTCAACGCCCGAACGA
TCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGATTGGACCGAAG
GTTACGACAACAGGATCGACAGAGCAT
Found at i:15924608 original size:159 final size:158
Alignment explanation
Indices: 15924386--15924749 Score: 396
Period size: 158 Copynumber: 2.3 Consensus size: 158
15924376 CCGTACATCT
* *
15924386 GTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCTAGCCGAATCGAGGGT
1 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACTAGCCGAATCGAGGGT
* * **
15924451 TGTGGCAGCGGGA-CTGACAGCATGCAGAGGGGGACTGGGCC-GATCCCTGGCATGCACATTATG
66 TATGGCAGCAGGATC-GACAGCATGCAG-GGGGGACCAGGCCAG-TCCCTGGCATGCACATTATG
* **
15924514 CCTCTCCAACTGGCTCAGTGCCCGAACGCTC
128 CCTCTCCAACAGGCTCAGCACCCGAACGCTC
* * * * *
15924545 GTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAG-ATTGGACCGGA-CTGAG
1 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACTAG-CCGAATC-GAG
* * * * * *
15924607 GGTTATGGCAGCAGGATCGACAGCATGTAGGGGGGACCAGGTCAGTCCTTGGCTTGCGCATTCTG
63 GGTTATGGCAGCAGGATCGACAGCATGCAGGGGGGACCAGGCCAGTCCCTGGCATGCACATTATG
*** * * * *
15924672 CCTCTCTGGCAGGTTGAGCACCCGTATGCTC
128 CCTCTCCAACAGGCTCAGCACCCGAACGCTC
15924703 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
15924750 GTACGGAGTT
Statistics
Matches: 169, Mismatches: 29, Indels: 14
0.80 0.14 0.07
Matches are distributed among these distances:
157 3 0.02
158 90 0.53
159 72 0.43
160 4 0.02
ACGTcount: A:0.20, C:0.24, G:0.30, T:0.26
Consensus pattern (158 bp):
GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACTAGCCGAATCGAGGGT
TATGGCAGCAGGATCGACAGCATGCAGGGGGGACCAGGCCAGTCCCTGGCATGCACATTATGCCT
CTCCAACAGGCTCAGCACCCGAACGCTC
Found at i:15924727 original size:158 final size:157
Alignment explanation
Indices: 15924322--15924749 Score: 447
Period size: 159 Copynumber: 2.7 Consensus size: 157
15924312 CATACAAGAA
* * *
15924322 GGGACAGGGCCGATCCCAGGCTTACGCATTCTGCCTCTCTGGTCGGTTGAGTGCCCGTA-CATCT
1 GGGACAGGGCAGATCCCTGGCTTGCGCATTCTGCCTCTCTGG-CGGTTGAGTGCCCGTAGC-TC-
* *
15924386 GTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCTAGCCGAATCGAGGGT
63 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACTAGCCGAATCGAGGGT
* *
15924451 TGTGGCAGCGGGACTGACAGCATGCAGAGG
128 TATGGCAGCAGGACTGACAGCATGCAGAGG
* * * * * *** * * *
15924481 GGGACTGGGCCGATCCCTGGCATGCACATTATGCCTCTCCAACTGGCTCAGTGCCCGAACGCTCG
1 GGGACAGGGCAGATCCCTGGCTTGCGCATTCTGCCTCTCTGGC-GGTTGAGTGCCCGTA-GCTCG
* * * * *
15924546 TTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAG-ATTGGACCGGA-CTGAGG
64 TTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACTAG-CCGAATC-GAGG
*
15924608 GTTATGGCAGCAGGA-TCGACAGCATGTAG-GG
126 GTTATGGCAGCAGGACT-GACAGCATGCAGAGG
* * **
15924639 GGGACCAGGTCAG-TCCTTGGCTTGCGCATTCTGCCTCTCTGGCAGGTTGAGCACCCGTATGCTC
1 GGGA-CAGGGCAGATCCCTGGCTTGCGCATTCTGCCTCTCTGGC-GGTTGAGTGCCCGTA-GCTC
15924703 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
63 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
15924750 GTACGGAGTT
Statistics
Matches: 218, Mismatches: 41, Indels: 20
0.78 0.15 0.07
Matches are distributed among these distances:
157 3 0.01
158 88 0.40
159 121 0.56
160 5 0.02
161 1 0.00
ACGTcount: A:0.19, C:0.25, G:0.30, T:0.26
Consensus pattern (157 bp):
GGGACAGGGCAGATCCCTGGCTTGCGCATTCTGCCTCTCTGGCGGTTGAGTGCCCGTAGCTCGTT
TCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACTAGCCGAATCGAGGGTTAT
GGCAGCAGGACTGACAGCATGCAGAGG
Found at i:15925892 original size:26 final size:26
Alignment explanation
Indices: 15925862--15925914 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15925852 GTTGACTTAG
*
15925862 GCATACGGAGTTCATCCCCAGCCTAA
1 GCATACAGAGTTCATCCCCAGCCTAA
* *
15925888 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGCCTAA
15925914 G
1 G
15925915 ATCGGATAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGCCTAA
Found at i:15926241 original size:26 final size:26
Alignment explanation
Indices: 15926204--15926255 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15926194 GTTGGGTTAG
*
15926204 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
15926230 GCATACGAAGTTCTTTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15926256 AAGTTTGAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15927331 original size:159 final size:157
Alignment explanation
Indices: 15926953--15927346 Score: 353
Period size: 159 Copynumber: 2.5 Consensus size: 157
15926943 CCTAGTCTAA
* * * * *
15926953 GCATATGGAGTTCATTCCCAGTCCAAGATTAGACCAGACTGAGGGTTGCAGCAGCAAGATCGATA
1 GCATA-GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTAGCAGCAAGATCGAAA
*** * * * * * * * *
15927018 GCACGTTCGGGGGACCGGGCCGATCCCCAGCTTATGCATTCTGCCTCTCCGGCCGACTGAGTGCC
65 GCACGAGAGGGGGAACGGACCGATCCCCAGCATACGCATTATGCCTCTCCGGCAGACTCAGTGCA
* * *
15927083 CGTACGCCTGTTTAATGGGTTGGCTTAG
130 CGAACGCCTATTTAATGGGTTGACTTAG
** ** * * * * **
15927111 GCATAGAGAGTTCATTCCTTGTCTAAGCCCCA-ACCGGATCGAGGGTTGTGGTAGCGGGATCGAA
1 GCATAG-GAGTTCATTCCCAGTCTAAG-ATCAGACCAGACCGAGGGTTGTAGCAGCAAGATCGAA
* *
15927175 AGCATGCAGAGGGGGAACGGATCGATCCCCAGCATACGCATTATGCCTCTCCGGTCAG-CTCAGT
64 AGCACG-AGAGGGGGAACGGACCGATCCCCAGCATACGCATTATGCCTCTCCGG-CAGACTCAGT
* * * *
15927239 GCATGAATGCTTATTTCATGGGTTGACTTAG
127 GCACGAACGCCTATTTAATGGGTTGACTTAG
* * * *
15927270 GTATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGTAGCAGCCAGATCGACA
1 GCATA-GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTAGCAGCAAGATCGAAA
*
15927335 GCAC-ATAGGGGG
65 GCACGAGAGGGGG
15927347 GATCGGGTCG
Statistics
Matches: 180, Mismatches: 50, Indels: 13
0.74 0.21 0.05
Matches are distributed among these distances:
157 8 0.04
158 52 0.29
159 117 0.65
160 3 0.02
ACGTcount: A:0.23, C:0.25, G:0.29, T:0.23
Consensus pattern (157 bp):
GCATAGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTAGCAGCAAGATCGAAAG
CACGAGAGGGGGAACGGACCGATCCCCAGCATACGCATTATGCCTCTCCGGCAGACTCAGTGCAC
GAACGCCTATTTAATGGGTTGACTTAG
Found at i:15927457 original size:26 final size:26
Alignment explanation
Indices: 15927428--15927480 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15927418 GTTCGCTTAG
*
15927428 GCATACGGACTTCATTCC-ATGTCTAA
1 GCATACGAACTTCATTCCTA-GTCTAA
*
15927454 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAACTTCATTCCTAGTCTAA
15927480 G
1 G
15927481 ATCGGGCCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAACTTCATTCCTAGTCTAA
Found at i:15927679 original size:26 final size:26
Alignment explanation
Indices: 15927650--15927702 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15927640 GTTGACTTAG
*
15927650 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
15927676 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15927702 G
1 G
15927703 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15928162 original size:157 final size:159
Alignment explanation
Indices: 15927807--15928175 Score: 397
Period size: 159 Copynumber: 2.3 Consensus size: 159
15927797 CTGAGTGCCT
* * * * * *
15927807 GCACGCCCATTTCGT-GGTTGGCTTAGGCATAGGGAGTTCA-TTCCATGTCTAAGCCCCAGCTGG
1 GCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCA-GTCTAAGACCAAACTGG
* * * * *
15927870 ACCGAGGGTTGTGGTAGCAGGATCGGCAGCCCGTAGAGGGGGACCGGGTCGATCCCCGACTTGCG
65 ACCGAGGGTTGCGGTAGCAGGATCGGCAACACGCAGAGGGGGACCGGGCCGATCCCCGACTTGCG
* ** **
15927935 TATTATGCCTCTTTGGTAGGCTCAGTGCCC
130 CATTATGCCTCTCCGGTAGGCTCAACGCCC
* * * * *
15927965 GAACGCTCGTTTCGTGGCTTGACTTAGGCATACGGAGTTCATTTCCAGTCTATGATCAAACTGGA
1 GCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAAGACCAAACTGGA
* * * *
15928030 TCGAGGGTTGCGGTAGCAGGATTGGCAACACGCAG-GGGGGATCGGGCCGATCCCC-AGCTTGTG
66 CCGAGGGTTGCGGTAGCAGGATCGGCAACACGCAGAGGGGGACCGGGCCGATCCCCGA-CTTGCG
* * * *
15928093 CATTCTG-TTCTCCGGTCGGCTGAACGCCC
130 CATTATGCCTCTCCGGTAGGCTCAACGCCC
* **
15928122 GCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
1 GCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAAG
15928176 CATACGGAGT
Statistics
Matches: 172, Mismatches: 36, Indels: 7
0.80 0.17 0.03
Matches are distributed among these distances:
157 63 0.37
158 40 0.23
159 64 0.37
160 5 0.03
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.25
Consensus pattern (159 bp):
GCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAAGACCAAACTGGA
CCGAGGGTTGCGGTAGCAGGATCGGCAACACGCAGAGGGGGACCGGGCCGATCCCCGACTTGCGC
ATTATGCCTCTCCGGTAGGCTCAACGCCC
Found at i:15928199 original size:26 final size:26
Alignment explanation
Indices: 15928149--15928201 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15928139 GTTGACTTAG
*
15928149 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
15928175 GCATACGGAGTTCATTCCTAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
15928201 G
1 G
15928202 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:15928524 original size:26 final size:26
Alignment explanation
Indices: 15928495--15928547 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15928485 GTTGGCTTAG
15928495 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
15928521 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15928547 G
1 G
15928548 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15928537 original size:346 final size:344
Alignment explanation
Indices: 15927906--15928548 Score: 788
Period size: 344 Copynumber: 1.9 Consensus size: 344
15927896 CAGCCCGTAG
* * * ** *
15927906 AGGGGGACCGGGTCGATCCCCGACTTGCGTATTATGCCTCTTTGGTAGGCTCAGTGCCCGAACGC
1 AGGGGGACCAGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGGTAGGCTCAGCGCCCGAACGC
* * *
15927971 TCGTTTCGTGGCTTGACTTAGGCATACGGAGTTCATTTCCAGTCTATGATCAAACTGGATCGAGG
66 CCGTTTCGTGGCTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAAGACCAAACTGGATCGAGG
* * * ** * *
15928036 GTTGCGGTAGCAGGATTGGCAACACGCAGGGGGGATCGGGCCGATCCCCAGCTTGTGCATTCTGT
131 GTTGCGGTAGCAGGATCGACAACACGCAGAGGGGATCGGGCCGATCCCCAGCTTACGCATTATGC
* *
15928101 TCTCCGGTCGGCTGAACGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCC
196 TCTCCGGTCGACTGAACGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATCC
*
15928166 CCAGTCTAAGCATACGGAGTTCATTCCTAATCTAAGATCGGATCGGATCAGACCGAAGGATACGG
261 CCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGATCGGATCAGACCGAAGGATACGG
15928231 CCATAGGATCGAAGCACGT
326 CCATAGGATCGAAGCACGT
* * * * *
15928250 AGGGGGACCAGGCCTATCCCCGACTTGCGCATTCTGCCTCTCCGGTTGGCTTAGCGCCCGTACGC
1 AGGGGGACCAGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGGTAGGCTCAGCGCCCGAACGC
* * ** * * * * * * *
15928315 CCGTTTCGTGGGTTGGCTTAGTTATAGGGAGTTCA-TTCCTTGTTTAAGCCCCAGCTGGATTGAG
66 CCGTTTCGTGGCTTGACTTAGGCATACGGAGTTCATTTCC-AGTCTAAGACCAAACTGGATCGAG
* * * * * *
15928379 GGTTGTGGTAGCGGGATCGACAGCACGTAGAAGGGGATCGGGCTGATCCCCGGCTTACGCATTAT
130 GGTTGCGGTAGCAGGATCGACAACACGCAG-AGGGGATCGGGCCGATCCCCAGCTTACGCATTAT
* * ** *
15928444 GCCTCTCCGG-CAGACTGAGCGCCCGCATGCTCATTTTGTGGGTTGGCTTAGGCATACGAAGTTC
194 G-CTCTCCGGTC-GACTGAACGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTC
* *
15928508 AT-TCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
257 ATCCCCA-GTCTAAGCATACGGAGTTCATTCCCAATCTAAGA
15928549 GTTTGAGCCA
Statistics
Matches: 246, Mismatches: 48, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
343 4 0.02
344 123 0.50
345 33 0.13
346 86 0.35
ACGTcount: A:0.19, C:0.26, G:0.29, T:0.26
Consensus pattern (344 bp):
AGGGGGACCAGGCCGATCCCCGACTTGCGCATTATGCCTCTCCGGTAGGCTCAGCGCCCGAACGC
CCGTTTCGTGGCTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAAGACCAAACTGGATCGAGG
GTTGCGGTAGCAGGATCGACAACACGCAGAGGGGATCGGGCCGATCCCCAGCTTACGCATTATGC
TCTCCGGTCGACTGAACGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATCC
CCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGATCGGATCAGACCGAAGGATACGG
CCATAGGATCGAAGCACGT
Found at i:15929222 original size:26 final size:26
Alignment explanation
Indices: 15929173--15929225 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15929163 GATGACGTAG
* *
15929173 GCATATGGAGTTCATTCTATGTCTAA
1 GCATAAGGAGTTCATTCCATGTCTAA
15929199 GCATAAGGAGTTCATTCCCA-GTCTAA
1 GCATAAGGAGTTCATT-CCATGTCTAA
15929225 G
1 G
15929226 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCATGTCTAA
Found at i:15929756 original size:666 final size:671
Alignment explanation
Indices: 15928492--15929809 Score: 1917
Period size: 666 Copynumber: 2.0 Consensus size: 671
15928482 TGGGTTGGCT
*
15928492 TAGGCATACGAAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAGTTTGAGC
1 TAGGCATACGAAGTTCATTCCATGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGAGTTTGAGC
* * * * * * ** *
15928557 CACGGTGCATAGGCTGGGCTCGGGCTTGTGTTGGTGCCGCATTTTTTTTGCTCGAGGCACCATCG
66 CACGGTGCACAGGCTAGGCTCGGGCATGTGCTGGTGCCACATTGTTTTAACCCGAGGCACCATCG
* * *
15928622 CCGGAGCATCACCGGAGCATTGCTGGAGAGCCTAACCGACGGCATTGGGGATTCCGATGATTGAG
131 CCGGAGCAT--CC-G-GC--T-CTAGAGAGCCTAACCGACGACATTGGGGATTCCGACGATTGAG
15928687 GGCAGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
189 GGCAGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
*
15928752 CTCCCTCATCAAACCTCGAGAACTCACACCCCCCTTAAAGGAGCATTTAGTCGATTTTATAGGTT
254 CTCCCTCATCAAACCTCGAGAACTCACACCCCCCTTAAAGGAGCATTTAGTAGATTTTATAGGTT
* * *
15928817 TGCTGCCAGAGCCATTAAAGTGTCTGGAATGGGGGACCATATTTTTTAACGATTACAAAATCTTC
319 TGCTACCAGAGCCATTAAAGTGTCTGAAATGGGGGACCATATTTTTTAACGATCACAAAATCTTC
* * * * * *
15928882 TCCACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAAGAAAAATACAAGGATCACCTCTAC
384 TCCACTTCGAGTCTTTAGCTGAATTTGTTTGTGCATGCCAACAAAAATACAAGGATAAACTCTAC
** * *
15928947 CTAATTTGGGGACATAACTCTTTCTAAAAAAATTTTAAAAAAGCCCGAACCGCAAAAAGTTTCAA
449 AAAATTTGGGGACAAAACTCTTTCTAAAAAAAATTTAAAAAAGCCCGAACCGCAAAAAGTTTCAA
* *
15929012 AAATCAAGAAAAATAGAAAACGGGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAGGGGACCA
514 AAATCAAGAAAAATAGAAAACGGGTCGTCTTGCCACGAAACTTAACATGAAGGCTTAGGGGACCA
15929077 TTGTATGAATTTACAAGCCATAAAAATGACATTGGCATGG-CAGAAATATGAAGATGTGCTTGAA
579 TTGTATGAATTTACAAGCCATAAAAATGACATTGGCA-GGTCAGAAATATGAAGATGTGCTTGAA
15929141 CCCCCGCACTCTCATTTCATGGGATGACG
643 CCCCCGCACTCTCATTTCATGGGATGACG
* * *
15929170 TAGGCATATGGAGTTCATTCTATGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGAGTTTGAGC
1 TAGGCATACGAAGTTCATTCCATGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGAGTTTGAGC
* * * *
15929235 CACGGTGCACATGCTAGGCTTGGGCATGTGCTGGTGCCACATTGTTTTAACCCGGGGCACCATTG
66 CACGGTGCACAGGCTAGGCTCGGGCATGTGCTGGTGCCACATTGTTTTAACCCGAGGCACCATCG
* * * *
15929300 TCGGAGCAT-C-GC-C-AGAGAGCCTAACCGACGACATTGGGGGTTCCGACGATTGGGGGGGCCG
131 CCGGAGCATCCGGCTCTAGAGAGCCTAACCGACGACATTGGGGATTCCGACGATT--GAGGG-CA
* *
15929361 GGGGTGTGTATGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTA-TC
193 GGGG-GTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTACTC
*
15929425 CCTCATCAAACCTCGAGAACTCACA-CCCCCTTAAA-GAGCATTT-G-AGATTTTATTGGTTTGC
257 CCTCATCAAACCTCGAGAACTCACACCCCCCTTAAAGGAGCATTTAGTAGATTTTATAGGTTTGC
*
15929486 TACCAGTAGCCATTAAAGTGTCTGAAAT-GGGGA-CACT-TTTTTTAAACGGTCACAAAATCTTC
322 TACCAG-AGCCATTAAAGTGTCTGAAATGGGGGACCA-TATTTTTT-AACGATCACAAAATCTTC
15929548 TCCACTTCGAGTCTTTAGCTGAATTTGTTTGTGCATGCCAACAAAAATACAAGGATAAACTCTAC
384 TCCACTTCGAGTCTTTAGCTGAATTTGTTTGTGCATGCCAACAAAAATACAAGGATAAACTCTAC
* * *
15929613 AAAATTTTGGGACAAAACTCTTT-TAAAAAAAAATTTAAAAAATCCCGAACCGTAAAAAGTTTCA
449 AAAATTTGGGGACAAAACTCTTTCT-AAAAAAAATTTAAAAAAGCCCGAACCGCAAAAAGTTTCA
* * *
15929677 AAAATCATGAAAAATAGAAAACGGGTCGTCTTGCCACGAAACTTAACATGAATGCTTATGGGACC
513 AAAATCAAGAAAAATAGAAAACGGGTCGTCTTGCCACGAAACTTAACATGAAGGCTTAGGGGACC
* * *
15929742 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAGGTTAGAAATATGAAGATGTGCTTTAA
578 ATTGTATGAATTTACAAGCCATAAAAATGACATTGGCAGGTCAGAAATATGAAGATGTGCTTGAA
15929807 CCC
643 CCC
15929810 ACCTACCACC
Statistics
Matches: 578, Mismatches: 53, Indels: 30
0.87 0.08 0.05
Matches are distributed among these distances:
665 11 0.02
666 278 0.48
667 55 0.10
668 9 0.02
669 14 0.02
670 32 0.06
671 55 0.10
672 2 0.00
675 1 0.00
678 121 0.21
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (671 bp):
TAGGCATACGAAGTTCATTCCATGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGAGTTTGAGC
CACGGTGCACAGGCTAGGCTCGGGCATGTGCTGGTGCCACATTGTTTTAACCCGAGGCACCATCG
CCGGAGCATCCGGCTCTAGAGAGCCTAACCGACGACATTGGGGATTCCGACGATTGAGGGCAGGG
GGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTACTCCCTC
ATCAAACCTCGAGAACTCACACCCCCCTTAAAGGAGCATTTAGTAGATTTTATAGGTTTGCTACC
AGAGCCATTAAAGTGTCTGAAATGGGGGACCATATTTTTTAACGATCACAAAATCTTCTCCACTT
CGAGTCTTTAGCTGAATTTGTTTGTGCATGCCAACAAAAATACAAGGATAAACTCTACAAAATTT
GGGGACAAAACTCTTTCTAAAAAAAATTTAAAAAAGCCCGAACCGCAAAAAGTTTCAAAAATCAA
GAAAAATAGAAAACGGGTCGTCTTGCCACGAAACTTAACATGAAGGCTTAGGGGACCATTGTATG
AATTTACAAGCCATAAAAATGACATTGGCAGGTCAGAAATATGAAGATGTGCTTGAACCCCCGCA
CTCTCATTTCATGGGATGACG
Found at i:15929932 original size:26 final size:26
Alignment explanation
Indices: 15929898--15929948 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
15929888 ATGACTTAGG
*
15929898 CATATGGAGTTCATCCCCAGTCTAAT
1 CATACGGAGTTCATCCCCAGTCTAAT
* * *
15929924 CATACGGAGTTTATTCCTAGTCTAA
1 CATACGGAGTTCATCCCCAGTCTAA
15929949 GATCAGACCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.27, C:0.24, G:0.16, T:0.33
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAT
Found at i:15930286 original size:159 final size:158
Alignment explanation
Indices: 15929924--15930424 Score: 531
Period size: 158 Copynumber: 3.2 Consensus size: 158
15929914 CCAGTCTAAT
* ** * ** *
15929924 CATACGGAGTTTATTCCTAGTCTAAGATCAGACCAGACCAAGAGTTGCAACAGCAGGATCGAAAG
1 CATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGACAG
* *
15929989 CACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGGCTGGCTGAGCGCCC
66 CACGCAGGGGGGATCGGGCCGATCCCCGACTTGCACATTCTGCCTCTCCGACTGGCTGAGCGCCC
* * ** *
15930054 GTACGCTCATTTTTTGGGTTGGCTTAGG
131 GAACGCTCGTTTCATGGGTTGACTTAGG
* ** * * * * *
15930082 CATAGGGAGTTCATTCC-ATGTCTAAGCCCCAG-CCGGACTGAGGGTTGTGGCAGCGGGACCGGC
1 CATACGGAGTTCATTCCTA-GTCTAAG-ATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGAC
* * ** * * * * * * *
15930145 AGCACCCAGAAGGGGATCGAACTGATCCCCGACCTGCACATTATGCCTTTCTGACTGGCTCAGTG
64 AGCACGCAG-GGGGGATCGGGCCGATCCCCGACTTGCACATTCTGCCTCTCCGACTGGCTGAGCG
* * *
15930210 CTCGAATGCTCGTTTCATGGGTTGACTTATG
128 CCCGAACGCTCGTTTCATGGGTTGACTTAGG
* * *
15930241 CATACAGAGTTCATTCCTAGTCTAAGATCAGACCAGACTGAGGGTTACGGTAGCAGGATCGACAG
1 CATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGACAG
* * * *
15930306 CACGCAGGGGGGGTCGGGCCGATCCCC-AGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCC
66 CACGCAGGGGGGATCGGGCCGATCCCCGA-CTTGCACATTCTGCCTCTCCGACTGGCTGAGCGCC
* *
15930370 CGCACGCTCGTTTCGTGGGTTGACTTAGG
130 CGAACGCTCGTTTCATGGGTTGACTTAGG
*
15930399 CATACGGAGTTCATCCCTAGTCTAAG
1 CATACGGAGTTCATTCCTAGTCTAAG
15930425 CATACGGAGT
Statistics
Matches: 268, Mismatches: 69, Indels: 12
0.77 0.20 0.03
Matches are distributed among these distances:
157 2 0.01
158 142 0.53
159 123 0.46
160 1 0.00
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
CATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGACAG
CACGCAGGGGGGATCGGGCCGATCCCCGACTTGCACATTCTGCCTCTCCGACTGGCTGAGCGCCC
GAACGCTCGTTTCATGGGTTGACTTAGG
Found at i:15930434 original size:26 final size:26
Alignment explanation
Indices: 15930398--15930450 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15930388 GTTGACTTAG
15930398 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
15930424 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15930450 G
1 G
15930451 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15930575 original size:184 final size:184
Alignment explanation
Indices: 15930240--15930609 Score: 510
Period size: 184 Copynumber: 2.0 Consensus size: 184
15930230 GTTGACTTAT
*
15930240 GCATACAGAGTTCATTCCTAGTCTAAGATCAGACCAGACTGAGGGTTACGGTAGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGTAGCAGGATCGACA
** * *
15930305 GCACGCAGGGGGGGTCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCC
66 GCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGACCGACTGAGCACC
* *
15930370 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCC-TAGTCTAA
131 CGCACGCCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCAT-GTCTAA
* * * *
15930424 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATTGAGGGTTGCGGTAGCAGGATTGGA-
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGTAGCAGGA-TCGAC
* * * * * * *
15930488 AGCATGCAGGGGGGACCTGGCCGATGCTCAGCTTGCGCATTCTATCTCTCTGGCCGACTGAGCAC
65 AGCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGACCGACTGAGCAC
* * * *
15930553 CCGTACGCCCGTTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
130 CCGCACGCCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAA
15930608 GC
1 GC
15930610 CCCAGCTGGA
Statistics
Matches: 162, Mismatches: 22, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
184 158 0.98
185 4 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (184 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGTAGCAGGATCGACA
GCACGCAGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGACCGACTGAGCACC
CGCACGCCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAA
Found at i:15931851 original size:26 final size:26
Alignment explanation
Indices: 15931822--15931874 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15931812 GTTGACTTAG
15931822 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
15931848 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15931874 G
1 G
15931875 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15932185 original size:26 final size:26
Alignment explanation
Indices: 15932135--15932187 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15932125 GTTGGCTTAG
*
15932135 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
15932161 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
15932187 G
1 G
15932188 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:15932394 original size:13 final size:12
Alignment explanation
Indices: 15932360--15932395 Score: 63
Period size: 12 Copynumber: 2.9 Consensus size: 12
15932350 GTGCTGGTAC
15932360 TTGGCCCTTATA
1 TTGGCCCTTATA
15932372 TTGGCCCTTATA
1 TTGGCCCTTATA
15932384 TTGGTCCCTTAT
1 TTGG-CCCTTAT
15932396 CCCTCATCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 16 0.70
13 7 0.30
ACGTcount: A:0.14, C:0.25, G:0.17, T:0.44
Consensus pattern (12 bp):
TTGGCCCTTATA
Found at i:15932775 original size:27 final size:27
Alignment explanation
Indices: 15932745--15932802 Score: 75
Period size: 26 Copynumber: 2.2 Consensus size: 27
15932735 CATGGGTTGG
* *
15932745 CTAAGGCATATGGAGTTCCTT-CCATGT
1 CTAAGGCATACGGAGTTCATTCCCA-GT
15932772 CTAA-GCATACGGAGTTCATTCCCAGT
1 CTAAGGCATACGGAGTTCATTCCCAGT
15932798 CTAAG
1 CTAAG
15932803 ATCAGATTGG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
26 20 0.74
27 7 0.26
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (27 bp):
CTAAGGCATACGGAGTTCATTCCCAGT
Found at i:15932983 original size:26 final size:26
Alignment explanation
Indices: 15932947--15932999 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15932937 GTTGACTTAG
15932947 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
15932973 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15932999 G
1 G
15933000 ATCGAATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15933031 original size:197 final size:197
Alignment explanation
Indices: 15932675--15933031 Score: 466
Period size: 197 Copynumber: 1.8 Consensus size: 197
15932665 GAGGGATCGG
* * ** **
15932675 GCCGGTCCCCGACTTGCACATTCTACCTCTCTGGCCGGTTGAGCGCCCGCACGCTCATTCCATGG
1 GCCGATCCCCGACTTACACATTCTACCTCTCCAGCCGACTGAGCGCCCGCACGCTCATTCCATGG
* * * *
15932740 GTTGGCTAAGGCATATGGAGTTCCTTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
66 GTTGACTAAGGCATACGGAGTTCATCCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
** * * *
15932805 CAGATTGGATCAAAGGTTGCGGTAGCAGGACTAGCAACAATATCGACAGCATGCAGGGGAGGACC
131 CAGATCAGACCAAAGGTGGCGGCAGCAGGACTAGCAACAATATCGACAGCATGCAGGGGAGGACC
15932870 AA
196 AA
* * * * *
15932872 GCCGATCCCCGACTTACGCATTCTGCCTCTCCAGCCGACTGAGCGCCCGCACGCTCGTTTCGTGG
1 GCCGATCCCCGACTTACACATTCTACCTCTCCAGCCGACTGAGCGCCCGCACGCTCATTCCATGG
*
15932937 GTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
66 GTTGACTAAGGCATACGGAGTTCAT-CCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * *
15933001 TC-GAATCAGACCGAGGGTGGTGGCAGCAGGA
130 TCAG-ATCAGACCAAAGGTGGCGGCAGCAGGA
15933032 TCTGCAGCAC
Statistics
Matches: 134, Mismatches: 24, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
196 1 0.01
197 130 0.97
198 3 0.02
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.22
Consensus pattern (197 bp):
GCCGATCCCCGACTTACACATTCTACCTCTCCAGCCGACTGAGCGCCCGCACGCTCATTCCATGG
GTTGACTAAGGCATACGGAGTTCATCCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
CAGATCAGACCAAAGGTGGCGGCAGCAGGACTAGCAACAATATCGACAGCATGCAGGGGAGGACC
AA
Found at i:15933290 original size:159 final size:157
Alignment explanation
Indices: 15932973--15933317 Score: 401
Period size: 159 Copynumber: 2.2 Consensus size: 157
15932963 CCCAGTCTAA
** * * *
15932973 GCATACGGAGTTCATTCCCA-GTCTAAGATCGAATCAGACCGAGGGTGGTGGCAGCAGGATCTGC
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCCAATCAGACCGAGGGTGATGGCAGCAGGATCGGC
* * * * * * *
15933037 AGCACGTAAGGGGGATCGGGTCGATCCTCGACTTACGCATTCTGCCTCTCCGGTCGGCTGAGCAC
65 AACACGCAAGGGGGACCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCAGTCGACTGAGCAC
15933102 CCACATGCCTGTTTCATGGGTTGGCTTAG
130 CCACA-GCCTGTTTCATGGGTTGGCTTAG
* * *
15933131 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTATGGCAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCCCCAATCAGACCGAGGGTGATGGCAGCAGGATCGGCA
*
15933196 ACACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGTA-G-ATTCTGCCTCTCCAGTCGACTGAGC
66 ACACGCA-AGGGGGACCGGGCCGATCCCCGAC-T-TACGCATTCTGCCTCTCCAGTCGACTGAGC
** * *
15933259 GACCGCAC-GTTTGTTTCGTTGGTTGGCTTAG
128 -ACC-CACAGCCTGTTTCATGGGTTGGCTTAG
* *
15933290 GCACACAGAGTTCATTCCATGTCTAAGC
1 GCATACGGAGTTCATTCCATGTCTAAGC
15933318 ATATGGAGTT
Statistics
Matches: 158, Mismatches: 23, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
157 3 0.02
158 58 0.37
159 87 0.55
160 5 0.03
161 5 0.03
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGCCCCAATCAGACCGAGGGTGATGGCAGCAGGATCGGCA
ACACGCAAGGGGGACCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCAGTCGACTGAGCACC
CACAGCCTGTTTCATGGGTTGGCTTAG
Found at i:15934838 original size:887 final size:876
Alignment explanation
Indices: 15933130--15934857 Score: 2514
Period size: 887 Copynumber: 2.0 Consensus size: 876
15933120 GGTTGGCTTA
* * *
15933130 GGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTATGGCAGCAGGATCGGC
1 GGCACAGGGAGTGCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTATGGCAGCAGGACCGGC
* * * *
15933195 AACACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGTAGATTCTGCCTCTCCAGTCGACTGAGCG
66 AACACGCAGAGGGGGACCGGGCCGATCCCCGACTTGTACATTCTGCATCTCCAGCCGACTGAGCG
* * * *
15933260 ACCGCACGTTTGTTTCGTTGGTTGGCTTAGGCACACAGAGTTCATTCCATGTCTAAGCATATGGA
131 ACCGCACGCTCGTTTCGTGGGTTGGCTTAGGCACACAGAGTTCATTCCATGTCTAAGCATACGGA
* *
15933325 GTTCATTCTCAGTCTAAGACTTTGAGCCACGATGCACATGCTGGGCTCGGGCATCTACTGGTGCT
196 GTTCATTCTCAGTCTAAGACTTTGAGCCACGATGCACATGCTAGGCTCGGGCATCTACTGGTGCC
* *
15933390 GTATTTTTTTCGCTCGAGGCACCATCACCGGAGAGCCTAACCGACGGCATTGGGGGTTCCAGCGA
261 ATATTTTTTTCGCTCGAGGCACCATCACCGGAGAGCCTAACCGACGGCATTGGGGGTTCCAGCAA
** *
15933455 TTAGAGGGGCCAGGGGGTGGACGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTG
326 TTAGAGGGGCCAGGGGGTGGACGCACATGATACGTGATGGGTACTGGTACTTGGCCCTTATATTG
*
15933520 GCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAG
391 GCCCCCTATACCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAG
* * * *
15933585 GTTTGCTGCCAGTAGCCATTAAAGTGTTTAAAATGGGGACACCTTTTTCAAATGGTCACAAAATC
456 GTTTGCTACCAGTAGCCATTAAAATGTCTAAAATGGGGACACCTTTTTCAAACGGTCACAAAATC
* * *
15933650 TTCTTCGCTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAAAAAAATACAAGGATCACCTC
521 TTCTGCACTTCAAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAAAAAAATACAAGGATCACCTC
* *** * *
15933715 TACCAAATTTGGGGACAAAACTCTTTCTAAAAAAATTTTAAAAAATTTGAAACCGTAAAAAGTTT
586 TACCAAATTTGGGGACAAAACACTTTCTAAAAAAATTTTAAAAAATCCCAAACAGCAAAAAGTTT
** * *
15933780 TGAAAATCGTGAAAAATAGAAAACGGGTCGTCTTGCCACGAAACTTCACATGAAGGCTTAGGGGA
651 CAAAAATCGTGAAAAATAGAAAACGGGTCATCTTGCCACAAAACTTCACATGAAGGCTTAGGGGA
* * *
15933845 ACATTGTATGAATTTATAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCTTG
716 ACATTGTATGAATTTACAAGCCATAAAAATGACATTGGAATGGCAGAAATATGAAGATGTGCTTG
*
15933910 AACCCACCTACCACCCGTTCGATCCTCGGATTACGCATCCTGCATCTCTGATCGGCTGAGCGTCC
781 AACCCACCTACCACCCGTTCGATCCCCGGATTACGCATCCTGCATCTCTGATCGGCTGAGCGTCC
15933975 GTACGCTCGTTTCGTGAGTTGACTTAGGCAT
846 GTACGCTCGTTTCGTGAGTTGACTTAGGCAT
* ** * * * **
15934006 GGCACAGGGAGTGCATTCCATGTCTGAGCCCCAGTTGGATCGAGGGTTGTGGTAGTGGGACCGGC
1 GGCACAGGGAGTGCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTATGGCAGCAGGACCGGC
* * * *
15934071 AGCACTCAGAGGGGGACCGGGCCGATCCCCGACTTGCT-CATTCTGTATCTCCAGCCGGCTGAGC
66 AACACGCAGAGGGGGACCGGGCCGATCCCCGACTTG-TACATTCTGCATCTCCAGCCGACTGAGC
* * **
15934135 GCCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCTTACAGAGTTCATTCCATGTCTAAGCATACGG
130 GACCGCACGCTCGTTTCGTGGGTTGGCTTAGGCACACAGAGTTCATTCCATGTCTAAGCATACGG
* * * *
15934200 AGTTCATTC-CTAGTCTAAGAGTTTGAGCCACGGTGCACATGCTAGGCTCGGGCATGTGCTGGTG
195 AGTTCATTCTC-AGTCTAAGACTTTGAGCCACGATGCACATGCTAGGCTCGGGCATCTACTGGTG
* *
15934264 CCATA-TTTTTTCGCTCGGGGCACCATTGCTGGAGCATCGTCGGAGAGCCTAACCGGCGGCATTG
259 CCATATTTTTTTCGCTCGAGGCACCA----T----CA-C--CGGAGAGCCTAACCGACGGCATTG
* * * * *
15934328 GGGGTT-CTGACAATTTGGGGGGGCCGGGGGGTGTG-CGCATATGATACGTGATGGGTACTGGTA
313 GGGGTTCCAG-CAA-TTAGAGGGGCCAGGGGGTG-GACGCACATGATACGTGATGGGTACTGGTA
*
15934391 CTTGGCCCTTATATTGGCCCCCTATACCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG-
375 CTTGGCCCTTATATTGGCCCCCTATACCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGC
* * *
15934455 ATTTTGAGATTTTATAGGTTTGCTACCAGTAGCCGTTAAAATGTCTGAAATGGGGACACTTTTTT
440 A-TTTGAGATTTTATAGGTTTGCTACCAGTAGCCATTAAAATGTCTAAAATGGGGACACCTTTTT
* *
15934520 CAAACGGTCACAAAATCTTCTGCACTTCAAGTTTTTAGCTGAATGTTTTTGTTCATGCCAACAAA
504 CAAACGGTCACAAAATCTTCTGCACTTCAAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAAAAA
15934585 AATACAAGGATCACCTCTACCAAATTTGGGGACAAAACACTTTCTAAAAAAATTTTAAAAAATCC
569 AATACAAGGATCACCTCTACCAAATTTGGGGACAAAACACTTTCTAAAAAAATTTTAAAAAATCC
*
15934650 CAAACAGCAAAAAGTTTCAAAAATCGTTAAAAATAGAAAACGGGTCATCTTGCCACAAAACTTCA
634 CAAACAGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGGGTCATCTTGCCACAAAACTTCA
* * * **
15934715 CATGAAGGCTTAGGGGACCATTGTATGATTTTACAAGCCATAAAAATGATATTGGAATTTCAGAA
699 CATGAAGGCTTAGGGGAACATTGTATGAATTTACAAGCCATAAAAATGACATTGGAATGGCAGAA
* * *
15934780 ATATGAAGATGTGCTTGAACCCACCTACCACCCGTTCGATCCCCGGCTTGCGCATCCTGCCTCTC
764 ATATGAAGATGTGCTTGAACCCACCTACCACCCGTTCGATCCCCGGATTACGCATCCTGCATCTC
*
15934845 TGGTCGGCTGAGC
829 TGATCGGCTGAGC
15934858 CTCGGCATGC
Statistics
Matches: 752, Mismatches: 83, Indels: 23
0.88 0.10 0.03
Matches are distributed among these distances:
875 20 0.03
876 225 0.30
877 1 0.00
879 1 0.00
883 2 0.00
884 1 0.00
885 2 0.00
886 32 0.04
887 467 0.62
888 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (876 bp):
GGCACAGGGAGTGCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTATGGCAGCAGGACCGGC
AACACGCAGAGGGGGACCGGGCCGATCCCCGACTTGTACATTCTGCATCTCCAGCCGACTGAGCG
ACCGCACGCTCGTTTCGTGGGTTGGCTTAGGCACACAGAGTTCATTCCATGTCTAAGCATACGGA
GTTCATTCTCAGTCTAAGACTTTGAGCCACGATGCACATGCTAGGCTCGGGCATCTACTGGTGCC
ATATTTTTTTCGCTCGAGGCACCATCACCGGAGAGCCTAACCGACGGCATTGGGGGTTCCAGCAA
TTAGAGGGGCCAGGGGGTGGACGCACATGATACGTGATGGGTACTGGTACTTGGCCCTTATATTG
GCCCCCTATACCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAG
GTTTGCTACCAGTAGCCATTAAAATGTCTAAAATGGGGACACCTTTTTCAAACGGTCACAAAATC
TTCTGCACTTCAAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAAAAAAATACAAGGATCACCTC
TACCAAATTTGGGGACAAAACACTTTCTAAAAAAATTTTAAAAAATCCCAAACAGCAAAAAGTTT
CAAAAATCGTGAAAAATAGAAAACGGGTCATCTTGCCACAAAACTTCACATGAAGGCTTAGGGGA
ACATTGTATGAATTTACAAGCCATAAAAATGACATTGGAATGGCAGAAATATGAAGATGTGCTTG
AACCCACCTACCACCCGTTCGATCCCCGGATTACGCATCCTGCATCTCTGATCGGCTGAGCGTCC
GTACGCTCGTTTCGTGAGTTGACTTAGGCAT
Found at i:15934941 original size:26 final size:26
Alignment explanation
Indices: 15934889--15934941 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15934879 GTTCATTTAG
*
15934889 GCATACAGAGTTCATCCCCAGTATAA
1 GCATACAGAGTTCATCCCCAATATAA
* *
15934915 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATATAA
15934941 G
1 G
15934942 ATTAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATATAA
Found at i:15935261 original size:26 final size:26
Alignment explanation
Indices: 15935231--15935283 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15935221 GTTGGCTTAG
15935231 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15935257 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15935283 G
1 G
15935284 TGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15935786 original size:26 final size:26
Alignment explanation
Indices: 15935757--15935809 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15935747 CTTGGCTTAG
*
15935757 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
15935783 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15935809 G
1 G
15935810 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15935989 original size:26 final size:26
Alignment explanation
Indices: 15935953--15936005 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15935943 GTTGACTTAG
*
15935953 GCATACGGAGTTCATCTC-CAGTCTAA
1 GCATACAGAGTTCAT-TCGCAGTCTAA
15935979 GCATACAGAGTTCATTCGCAGTCTAA
1 GCATACAGAGTTCATTCGCAGTCTAA
15936005 G
1 G
15936006 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCGCAGTCTAA
Found at i:15936690 original size:537 final size:537
Alignment explanation
Indices: 15935725--15936883 Score: 1343
Period size: 537 Copynumber: 2.2 Consensus size: 537
15935715 ACCAGCTGAG
* ** * * *
15935725 CGCCCGAACGTTCGTTTCAAGGCTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACA
1 CGCCCGAACGATCGTTTCGTGGGTTGACTTAGGCATAC-GAGTTCATTCCATGTCTAAGCATACG
* * **
15935790 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGCGGCAGTAGGACCAGCAGCAGGAT
65 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTACGGCAGTAAGACCAGCAGCAAAAT
* * *
15935855 CGACAGCACACAGGGGGAACCGAGTCGATCCCCGACTTACACATTCTACCTCTCCGGCCAGCTGA
130 AGACAGAACACAGGGGGAACCGAGTCGATCCCCGACTTACACATTCTACCTCTCCGACCAGCTGA
* *
15935920 GCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCTCCAGTCTAAGCATAC
195 GCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATAC
* * * * *
15935985 AGAGTTCATTCGCAGTCTAAGATCGGACCGGACCGAGGGTTACGACAGTAGGATCGATAGCACGC
260 AGAGTTCATTCGCAATCTAAGATCAGACCAGACCGAGGGTTACGACAGTAGGATCGACAGCACAC
* * * * * * ** *
15936050 AGGGGGGATCGGGTCTATTCTCGACTTGCGCATTCTGGCTCTTCGGTCGGTTGAGCGCCCGTACG
325 AGGGGGGATCGAGTCTATCCCCAACTTGCGCATTCTGCCTCTCCGACCAGTTGAGCGCCCGTACG
* * *
15936115 CCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTCATTCCATGTCTAAGCCCCAGCCAGA-TCGAG
390 CCCATTTCATGGGTTGGCTTAGGCATAGGGAGTCATTCCATGTCTAAGCCCCAGCCAGACT-AAA
* * * * * ** * *
15936179 GGCTGTGGCAGTGGGATCGACAGCACGCAGAAGGGGACGGGGTTGATCCCCGACTTGTGCGTTAT
454 GGCTGTGGCAGCGGGACCGACAACACGCAGAAGGGGACCGAGCCGATCCCCGACTTATGCATTAT
* *
15936244 GCC-TCTCTGGCTGGCTCAA
519 ACCTTCTC-GGCCGGCTCAA
* * * *
15936263 TGCCGGAACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCATATCTAAGCATACG
1 CGCCCGAACGATCGTTTCGTGGGTTGACTTAGGCATAC-GAGTTCATTCCATGTCTAAGCATACG
* * *
15936328 GAGTTCATTCCCAGTCTAAGATCAGACCGGATC-AAGGGTTACGGTAGTAAGACCAGCAGCAAAA
65 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAA-GGTTACGGCAGTAAGACCAGCAGCAAAA
* * * * * * *
15936392 TTAG-CAGAACACAGGAGGG-ATCG-GGCTGATCCCTG-CTTGCGCATTCTGCCTGTCCGACC-G
129 -TAGACAGAACACAGG-GGGAACCGAGTC-GATCCCCGACTTACACATTCTACCTCTCCGACCAG
*
15936452 ACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAG
191 -CTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAG
* * * * **
15936517 CATACATATTTCATTAC-CAATCTAAGATCAGACCAGATCGAGGGTTGCGGTAGTAGGATCGACA
255 CATACAGAGTTCATT-CGCAATCTAAGATCAGACCAGACCGAGGGTTACGACAGTAGGATCGACA
* *
15936581 GCACACA-GGGGGA-CTGAGT-TGATCCCCAACTTGTGCATTCTGCCTCTCCGACCAGTTGAGGG
319 GCACACAGGGGGGATC-GAGTCT-ATCCCCAACTTGCGCATTCTGCCTCTCCGACCAGTTGAGCG
** **
15936643 CCCGTACGCCTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTT
382 CCCGTACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAG-TCATTCCATGTCTAAGCCCCAGCC
* * * *
15936708 GGACTAAAGGTTGTGGCAGCGGGACCGACAACACGCAGAGGGGGACCGAGCCGATCCCCGGCTTA
446 AGACTAAAGGCTGTGGCAGCGGGACCGACAACACGCAGAAGGGGACCGAGCCGATCCCCGACTTA
* * * * *
15936773 TGCATTCTACCTTTTCGGCCGGTTGAG
511 TGCATTATACCTTCTCGGCCGGCTCAA
* * * * *
15936800 CGCCCGTACGATCGTTTCGTGTGTTGGCCTAGGCATACGAAGTTCATTCCATGTCTAAACATACG
1 CGCCCGAACGATCGTTTCGTGGGTTGACTTAGGCATACG-AGTTCATTCCATGTCTAAGCATACG
*
15936865 TAGTTCATTCCCAGTCTAA
65 GAGTTCATTCCCAGTCTAA
15936884 TAGTTTGAGC
Statistics
Matches: 520, Mismatches: 89, Indels: 25
0.82 0.14 0.04
Matches are distributed among these distances:
535 2 0.00
536 79 0.15
537 300 0.58
538 134 0.26
539 5 0.01
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (537 bp):
CGCCCGAACGATCGTTTCGTGGGTTGACTTAGGCATACGAGTTCATTCCATGTCTAAGCATACGG
AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTACGGCAGTAAGACCAGCAGCAAAATA
GACAGAACACAGGGGGAACCGAGTCGATCCCCGACTTACACATTCTACCTCTCCGACCAGCTGAG
CGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACA
GAGTTCATTCGCAATCTAAGATCAGACCAGACCGAGGGTTACGACAGTAGGATCGACAGCACACA
GGGGGGATCGAGTCTATCCCCAACTTGCGCATTCTGCCTCTCCGACCAGTTGAGCGCCCGTACGC
CCATTTCATGGGTTGGCTTAGGCATAGGGAGTCATTCCATGTCTAAGCCCCAGCCAGACTAAAGG
CTGTGGCAGCGGGACCGACAACACGCAGAAGGGGACCGAGCCGATCCCCGACTTATGCATTATAC
CTTCTCGGCCGGCTCAA
Found at i:15936863 original size:26 final size:26
Alignment explanation
Indices: 15936833--15936883 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15936823 TTGGCCTAGG
15936833 CATACGAAGTTCATT-CCATGTCTAAA
1 CATACGAAGTTCATTCCCA-GTCTAAA
*
15936859 CATACGTAGTTCATTCCCAGTCTAA
1 CATACGAAGTTCATTCCCAGTCTAA
15936884 TAGTTTGAGC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.31, C:0.25, G:0.12, T:0.31
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAGTCTAAA
Found at i:15937583 original size:26 final size:26
Alignment explanation
Indices: 15937553--15937605 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15937543 GTTGACTTAG
*
15937553 GCATACAAAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAATCTAA
* *
15937579 GCATACAAAGTTTATTCCCAATCTAA
1 GCATACAAAGTTCATCCCCAATCTAA
15937605 G
1 G
15937606 ATTGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.36, C:0.26, G:0.11, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAATCTAA
Found at i:15938289 original size:26 final size:26
Alignment explanation
Indices: 15938252--15938304 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
15938242 GTTGGCCTAG
15938252 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
15938278 GCATAC-GTAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
15938304 G
1 G
15938305 AGATTGAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 21 0.84
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15944543 original size:26 final size:26
Alignment explanation
Indices: 15944494--15944545 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15944484 GTTGGCTTAG
* *
15944494 GCATACGGAGTTCATTCCACGTCTAA
1 GCATACAGAGTTCATACCACGTCTAA
15944520 GCATACAGAGTTCATACC-CTGTCTAA
1 GCATACAGAGTTCATACCAC-GTCTAA
15944546 AATTTTGAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATACCACGTCTAA
Found at i:15945244 original size:26 final size:26
Alignment explanation
Indices: 15945214--15945266 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15945204 GTTGACTTAG
* *
15945214 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
15945240 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
15945266 G
1 G
15945267 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:15946443 original size:157 final size:156
Alignment explanation
Indices: 15945976--15946476 Score: 495
Period size: 159 Copynumber: 3.2 Consensus size: 156
15945966 TCGAGTCTAA
* * * * * *
15945976 GCATATGGAGTTCATTCCTAGTCTAAGATCGGACCAGATCGAGGGTTACGGTAGCAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGGACCGAGGGTTGCGGTAGCAAGATCGACA
* * * *
15946041 GCACGCAAGAGGGACCGGGCTGATCCCTGGCTTCCGTATTCTTCCTCTCCGATCGGCTGAGCTCC
65 GCACGCAAGGGGGA-CGGGCTGATCCCTGGCTTGCGTATTCTACCTCTCCGATCGGCTGAGCGCC
* *
15946106 TGCACGCCCGTTTCGTGGGTTGGCTTAG
129 CGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** * * * ** * *
15946134 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGACGGACTGAGGGTTGTGGCAGCGGGACCGGC
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACGGACCGAGGGTTGCGGTAGCAAGATCGAC
** * * * * * * *
15946198 AGCACGCAGAGGGGGACTGGGCCAATCCCCGGCTTGCGTATTATGCCTCTGCGGTTGGCTCAGCG
64 AGCACGCA-AGGGGGAC-GGGCTGATCCCTGGCTTGCGTATTCTACCTCTCCGATCGGCTGAGCG
* * *
15946263 CCCGCACGCTCATTTCGTGGGTTGACTTAT
127 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* ** *
15946293 GCATACGGAGTTCATTCCCAGCCTAAGATCAGATCGGACCGAGGGTTGCAATAGC-AGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGGACCGAGGGTTGCGGTAGCAAGATCGACA
* * * *
15946357 GCACGCAAGGGGGATCAGGCTGATCCCTGGCTTGCGCATTCTACCTCTTCGACCGGCTGAGCGCC
65 GCACGCAAGGGGGA-CGGGCTGATCCCTGGCTTGCGTATTCTACCTCTCCGATCGGCTGAGCGCC
* * *
15946422 CGCACACTTGTTTCGTAGGTTGGCTTAG
129 CGCACGCTCGTTTCGTGGGTTGGCTTAG
15946450 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
15946477 CATACGGAGT
Statistics
Matches: 271, Mismatches: 64, Indels: 17
0.77 0.18 0.05
Matches are distributed among these distances:
156 3 0.01
157 90 0.33
158 68 0.25
159 107 0.39
160 3 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACGGACCGAGGGTTGCGGTAGCAAGATCGACAG
CACGCAAGGGGGACGGGCTGATCCCTGGCTTGCGTATTCTACCTCTCCGATCGGCTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:15946486 original size:26 final size:26
Alignment explanation
Indices: 15946450--15946502 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15946440 GTTGGCTTAG
15946450 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15946476 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15946502 G
1 G
15946503 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15947201 original size:26 final size:26
Alignment explanation
Indices: 15947171--15947226 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
15947161 TGGGTTGACT
*
15947171 TAAGCATACAGAGTTCATCCCCAGTC
1 TAAGCATACAGAGCTCATCCCCAGTC
* *
15947197 TAAGCATACGGAGCTCATTCCCAGTC
1 TAAGCATACAGAGCTCATCCCCAGTC
15947223 TAAG
1 TAAG
15947227 ATTGAACCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.23
Consensus pattern (26 bp):
TAAGCATACAGAGCTCATCCCCAGTC
Found at i:15947553 original size:26 final size:26
Alignment explanation
Indices: 15947517--15947569 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15947507 GTTGGCTTAG
*
15947517 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
15947543 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15947569 G
1 G
15947570 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15947783 original size:348 final size:342
Alignment explanation
Indices: 15947138--15947891 Score: 836
Period size: 348 Copynumber: 2.2 Consensus size: 342
15947128 TCTGATTGGT
* * * * *
15947138 TGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAAGCATACAGAGTTCATCCCCAGTCTAAGCA
1 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-TCCAGTCTAAGCA
* *
15947203 TACGGAGCTCATTCCCAGTCTAAGATTGAACCAGACCGAGGGTTGCAGGAGCAGGACCTACAGCA
65 TACAGAGCTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCAGGAGCAGGACCTACAGCA
* * * * * *
15947268 CGTAGGAGGGACTGGGCCGATCTCCGGCTTACGCATTCTGCCTCTCTAGCCGGTTGACTGCCCAC
130 CGTAGGAGGGACCGAGCCAATCTCCGACTTACCCATTCTGCCTCTCTAGCCGGCTGACTGCCCAC
* *
15947333 ATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGATTTCATTCCATGTCTAAGCCTGAGCCAGACC
195 ACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGATTTCATTCCATGTCTAAGCCTGAGCCAAACC
* ** ** * * *
15947398 GAGGGTTGTGGTAGTGGGACCGGTACCATGCAGAGGGGGATCGGGTCGATCCCAGGGTTGCACAT
260 GAGGGTTGTGGCAACGGGACCGACACCATGCAGAGGGGGATCGGGCCGATCCCAGGCTTACACAT
*
15947463 TCTACCTCTCCGACCGAC
325 TATACCTCTCCGACCGAC
* *
15947481 TGAGCGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCA-GTCTAAGCA
* * * *
15947546 TACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGGACCGAGGGTTGC-GGCAGTAGGA-TT
65 TACAGAGCTCATTCCCAGTCTAAGATCGAACC--A---GACCGAGGGTTGCAGG-AGCAGGACCT
* * * * **
15947609 GGCAGCACGTAGGGGGGACCGAGCCAATC-CCTGACTTGCCCATTCTGCCTCTCTGGTTGGCTGA
124 -ACAGCACGTAGGAGGGACCGAGCCAATCTCC-GACTTACCCATTCTGCCTCTCTAGCCGGCTGA
* * *
15947673 GC-GCCCGCACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTT-ATTCCATGTCTAAGCCC
187 -CTGCCCACACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGA-TTTCATTCCATGTCTAAG-CC
* * * * * *
15947736 T-AGCCAAACTGAGGTTTGTGGCAACGGGATCGACAGCATGTAGAGGGGGATCGGGCCGATCCCC
249 TGAGCCAAACCGAGGGTTGTGGCAACGGGACCGACACCATGCAGAGGGGGATCGGGCCGATCCCA
* * ** * * *
15947800 GGCTTACGCATTATGCCTCTTTGGCTGGC
314 GGCTTACACATTATACCTCTCCGACCGAC
* * * *
15947829 TCAGCGCCCGAACGCTCGTTTCGTGGGTTCACTTAGGCATACGGAATTCATTCCCAGTCTAAG
1 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAG
15947892 ATCGAACCGA
Statistics
Matches: 340, Mismatches: 58, Indels: 21
0.81 0.14 0.05
Matches are distributed among these distances:
342 3 0.01
343 82 0.24
345 1 0.00
347 5 0.01
348 239 0.70
349 10 0.03
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (342 bp):
TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGCAT
ACAGAGCTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCAGGAGCAGGACCTACAGCAC
GTAGGAGGGACCGAGCCAATCTCCGACTTACCCATTCTGCCTCTCTAGCCGGCTGACTGCCCACA
CGCCCGTTTCATGGGTTGGCTTAGGCATAGGGATTTCATTCCATGTCTAAGCCTGAGCCAAACCG
AGGGTTGTGGCAACGGGACCGACACCATGCAGAGGGGGATCGGGCCGATCCCAGGCTTACACATT
ATACCTCTCCGACCGAC
Found at i:15947925 original size:159 final size:158
Alignment explanation
Indices: 15947543--15947933 Score: 390
Period size: 159 Copynumber: 2.4 Consensus size: 158
15947533 CCATGTCTAA
* * * *
15947543 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGGACCGAGGGTTGCGGCAGTAGGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACC-GA----ACTGAGGGTTGCGGCAGCAGGAT
* * * * * * *
15947608 TGGCAGCACGTAGGGGGGACCGAGCCAATCCCTGACTTGCCCATTCTGCCTCTCTGGTTGGCTGA
61 CGACAGCACGTAGGGGGGACCGAGCCAATCCCCGACTTACCCATTATGCCTCTCTGGCTGGCTCA
* **
15947673 GCGCCCGCACGCCTGTTTCGTGGGTTGGCTTAG
126 GCGCCCGAACGCCTGTTTCGTGGGTTCACTTAG
* * ** * * * * * * *
15947706 GCATAGGGAGTTTATT-CCATGTCTAAGCCCTAGCCAAACTGAGGTTTGTGGCAACGGGATCGAC
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGAACCGAACTGAGGGTTGCGGCAGCAGGATCGAC
* * * * * * *
15947770 AGCATGTAGAGGGGGATCGGGCCGATCCCCGGCTTACGCATTATGCCTCTTTGGCTGGCTCAGCG
65 AGCACGTAG-GGGGGACCGAGCCAATCCCCGACTTACCCATTATGCCTCTCTGGCTGGCTCAGCG
15947835 CCCGAACG-CTCGTTTCGTGGGTTCACTTAG
129 CCCGAACGCCT-GTTTCGTGGGTTCACTTAG
* *
15947865 GCATACGGAATTCATTCCCAGTCTAAGATCGAACCGAACTGAGGGTTGCGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAACTGAGGGTTGCGGCAGCAGGATCGACA
15947930 GCAC
66 GCAC
15947934 ACAGTGGGGA
Statistics
Matches: 178, Mismatches: 46, Indels: 12
0.75 0.19 0.05
Matches are distributed among these distances:
158 29 0.16
159 119 0.67
160 3 0.02
162 4 0.02
163 23 0.13
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAACTGAGGGTTGCGGCAGCAGGATCGACA
GCACGTAGGGGGGACCGAGCCAATCCCCGACTTACCCATTATGCCTCTCTGGCTGGCTCAGCGCC
CGAACGCCTGTTTCGTGGGTTCACTTAG
Found at i:15948052 original size:26 final size:26
Alignment explanation
Indices: 15948023--15948075 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15948013 GTTGGCTTAG
*
15948023 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCAT-TCTAA
15948049 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCATTCTAA
15948075 G
1 G
15948076 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCATTCTAA
Found at i:15948262 original size:26 final size:26
Alignment explanation
Indices: 15948233--15948285 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15948223 GTTGACTTAG
15948233 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
15948259 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
15948285 G
1 G
15948286 ATCAAATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:15948613 original size:26 final size:26
Alignment explanation
Indices: 15948577--15948629 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15948567 GTTGGCTTAG
15948577 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
*
15948603 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
15948629 G
1 G
15948630 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:15951381 original size:159 final size:160
Alignment explanation
Indices: 15951200--15951564 Score: 391
Period size: 159 Copynumber: 2.3 Consensus size: 160
15951190 TGCACGCCCG
* * * * *
15951200 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGAACTGAGGGT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAAACTGAAGGT
* * * * * * * *
15951264 TGTGGTAGCGGGATTGACAGTATGCAGA-G-GGGGACCGGG-CAGATCCTCGGCTTGCACATTAT
66 TGCGATAGCAGGATTGACAGCA--CAGATGAAGGGACCGGGCCAG-TCCCCAGCTTACACATTAT
* *
15951326 GCCTCTCCGGTAGGCTCAGCACCCAAACGTTCA
128 GCCTCTCCGATAGGCTCAGCACCCAAACGCTCA
* * * * *
15951359 TTTTGTGGGTTGACTTAAGCATACAGAGTTCATTCCCA-GTCTAAG-ATCAGACCAAACTGAAGG
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAAACTGAAGG
* * *
15951422 TTGCGATAGCAGGATTGACAGCACAGATGAAGGGATCGGGCCAGTCCCCAGCTTACGCATTCTGC
65 TTGCGATAGCAGGATTGACAGCACAGATGAAGGGACCGGGCCAGTCCCCAGCTTACACATTATGC
* * ** *
15951487 CTCTCCGATCGGCTGAGCACCCGCACGCTCG
130 CTCTCCGATAGGCTCAGCACCCAAACGCTCA
*
15951518 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTTCATGTCTAAGCA
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
15951565 TGCAGAGTTC
Statistics
Matches: 166, Mismatches: 33, Indels: 13
0.78 0.16 0.06
Matches are distributed among these distances:
157 4 0.02
158 6 0.04
159 149 0.90
160 7 0.04
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.25
Consensus pattern (160 bp):
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAAACTGAAGGT
TGCGATAGCAGGATTGACAGCACAGATGAAGGGACCGGGCCAGTCCCCAGCTTACACATTATGCC
TCTCCGATAGGCTCAGCACCCAAACGCTCA
Found at i:15951770 original size:26 final size:26
Alignment explanation
Indices: 15951734--15951785 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15951724 TTGACTTAGC
*
15951734 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACGAAGTTCATCCCCAGTCTAAG
*
15951760 CATACGAAGTTCATTCCCAGTCTAAG
1 CATACGAAGTTCATCCCCAGTCTAAG
15951786 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (26 bp):
CATACGAAGTTCATCCCCAGTCTAAG
Found at i:15951946 original size:26 final size:26
Alignment explanation
Indices: 15951917--15951969 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
15951907 GTTGGCTTAG
15951917 GCATAC-GAAGTTCATT-CCATGTCTAA
1 GCATACAG-AGTTCATTCCCA-GTCTAA
15951943 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15951969 G
1 G
15951970 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15952893 original size:26 final size:26
Alignment explanation
Indices: 15952857--15952907 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15952847 TTGACTTAGG
15952857 CATACAGAGTTCA-TCCCTAGTCTAAA
1 CATACAGAGTTCATTCCC-AGTCTAAA
*
15952883 CATACGGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATTCCCAGTCTAA
15952908 GATCAGACTG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAA
Found at i:15953393 original size:26 final size:26
Alignment explanation
Indices: 15953357--15953409 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15953347 GTTGGCTTAG
15953357 GCATACAGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
*
15953383 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
15953409 G
1 G
15953410 ATCAAATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:15953748 original size:158 final size:159
Alignment explanation
Indices: 15953495--15953896 Score: 389
Period size: 158 Copynumber: 2.5 Consensus size: 159
15953485 CCGACTTGTG
* * ** * *
15953495 CATTCTGCCTCTCCGGTCGGCTGAGCGCCCATACGCTCATTTTATGGGTTAACTTAGGCATACGG
1 CATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCATTTTGTGGGTTAGCTTAGGCATACGG
* * * ** * * *
15953560 AGTTCACTCCCA-GTCTAGGAATGAACCGGACCGTGGGTTGCGGTAGCAAGATTGGCAGCACACA
66 AGTTCA-TTCCATGTCTAAGCACCAACCGGACCGAGGGTTGCGGCAGCAAGACTGGCAGCACACA
** *
15953624 -AGAGGGACCAAGTTGATC-CTTGGCTTGCA
130 GAGAGGGACCAAGCCGATCTC-CGGCTTGCA
* *
15953653 CATTCTGCCTGTCCGGCCGACTGAGCGCCCGCACG-TCCATTTTGTGGGTTAGCTTAGGCATAGG
1 CATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCT-CATTTTGTGGGTTAGCTTAGGCATACG
* ** * ** * **
15953717 GAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGACTGGTAGCATGCA
65 GAGTTCATTCCATGTCTAAGCACCAACCGGACCGAGGGTTGCGGCAGCAAGACTGGCAGCACACA
* *
15953782 GAGGGGGACCAGGCCGATCTCCGGCTTGCA
130 GAGAGGGACCAAGCCGATCTCCGGCTTGCA
* * ** * * * * *
15953812 CATTCTGCCTTTTCAACTGACTAAGCACCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGG
1 CATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCATTTTGTGGGTTAGCTTAGGCATACGG
*
15953877 AGTTCATTTCATGTCTAAGC
66 AGTTCATTCCATGTCTAAGC
15953897 TTGCAGAGTT
Statistics
Matches: 198, Mismatches: 41, Indels: 9
0.80 0.17 0.04
Matches are distributed among these distances:
157 5 0.03
158 97 0.49
159 94 0.47
160 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.25
Consensus pattern (159 bp):
CATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCATTTTGTGGGTTAGCTTAGGCATACGG
AGTTCATTCCATGTCTAAGCACCAACCGGACCGAGGGTTGCGGCAGCAAGACTGGCAGCACACAG
AGAGGGACCAAGCCGATCTCCGGCTTGCA
Found at i:15954626 original size:26 final size:26
Alignment explanation
Indices: 15954590--15954642 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15954580 GTTGACTTAG
15954590 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
15954616 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
15954642 G
1 G
15954643 ATCGGGCTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:15954935 original size:159 final size:158
Alignment explanation
Indices: 15954756--15955118 Score: 394
Period size: 157 Copynumber: 2.3 Consensus size: 158
15954746 CGCACGCCCG
* * * *
15954756 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCT-GGACCGATGG-
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGATCGAACCGA-GGC
* ** * * *
15954819 TTGTGGCATCGGGATCGGTAGCACACAGAGGGGCATCGGGTCGATCCCTGGCTTGCACATTATGC
65 TTGTGGCA-CAGGATCGACAACACACA-AGGGGCACCGGGTCAATCCCTGGCTTGCACATTATGC
** *
15954884 CTCTCC-AGCCGGCTGAGCGACCGAATGCTCA
128 CTCTCCGA-CCAACTGAGCGACCGAACGCTCA
* * * * * *
15954915 TTTCGTGGGTTGACTTAGGCAAACTGAGTTCATTCC-TAGTCTAAG-ATCGGATCGAACTGAGGC
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCACCAGATCGAACCGAGGC
* * *
15954978 TTGTGGCACAGGATCGACAACACACAAGGGGGACCGGGTCAATCCTTGGCTTGCACATTCTGCCT
65 TTGTGGCACAGGATCGACAACACACAAGGGGCACCGGGTCAATCCCTGGCTTGCACATTATGCCT
* * * * *
15955043 CTCCGATCAACTGAGCGCCCGTACGTTCG
130 CTCCGACCAACTGAGCGACCGAACGCTCA
*
15955072 TTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
15955119 TATGGAGTTC
Statistics
Matches: 167, Mismatches: 31, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
157 92 0.55
158 23 0.14
159 52 0.31
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.26
Consensus pattern (158 bp):
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGATCGAACCGAGGCT
TGTGGCACAGGATCGACAACACACAAGGGGCACCGGGTCAATCCCTGGCTTGCACATTATGCCTC
TCCGACCAACTGAGCGACCGAACGCTCA
Done.