Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19866354
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 74000 characters in sequence are not A, C, G, or T
File 71 of 100
Found at i:15956360 original size:26 final size:26
Alignment explanation
Indices: 15956324--15956375 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15956314 TTGACTTAGA
* *
15956324 CATACGGAGTTCATCCCCAGTGTAAG
1 CATACAGAGTTCATCCCCAGTCTAAG
*
15956350 CATACAGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATCCCCAGTCTAAG
15956376 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (26 bp):
CATACAGAGTTCATCCCCAGTCTAAG
Found at i:15956669 original size:159 final size:158
Alignment explanation
Indices: 15956473--15957168 Score: 578
Period size: 158 Copynumber: 4.4 Consensus size: 158
15956463 TGACCGGCTG
* * * * *
15956473 AGCGCCCGCACGCCCATTTCGTGGGTTGGGTTAGGCATAGGGAGTTCATTCTATGTCTAAGCCCC
1 AGCG-CCGCACGCTCGTTTCGTGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC
* * *
15956538 AATCGAACCGAGGGTTGTGGCAGCGAGACCGGCAGCACGCAGAGGGGGATCGGGTCGATCCCCAG
65 AACCGGACCGAGGGTTGTGGCAGCGAGACCGACAGCACGCAGAGGGGGATCGGGTCGATCCCCAG
* **
15956603 CTTGCACATTATGCCTCTCCGGCCGACTC
130 CTTGCACATTTTGCCTCTCCGGCCGGTTC
* * * * * * ** * **
15956632 AGCGCCTGAATGCTCATTCCGTGGGTTAACTTGGGCATACAGAGTTCATTCCCA-ATCTAAG-AT
1 AGCGCC-GCACGCTCGTTTCGTGGGTTAGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCC
* * * ** * * * * * * * *
15956695 TAGACCGGACCAAGGGTTGCGAAAGCAAGATCAACAGCACG-AAAAGGGGATTGGGCCGGTCCCC
64 CA-ACCGGACCGAGGGTTGTGGCAGCGAGACCGACAGCACGCAGAGGGGGATCGGGTCGATCCCC
* ** *
15956759 -GACTTGCACATTTTGTCTCTCCGATCGGTTG
128 AG-CTTGCACATTTTGCCTCTCCGGCCGGTTC
* * * * * * *
15956790 AGTGCGCGTACGCTCGTTTCGTGGGTTGGTTTATGCATAGCGAGTTCATTCCATGTCGAAGCCCC
1 AGCGC-CGCACGCTCGTTTCGTGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC
* * * * * * ** *
15956855 AGCCGTACTGAGGGTTTTTGCAACG-GACCGACAGCACTTAGAGGGGGATCGGGTCGATCCTCAG
65 AACCGGACCGAGGGTTGTGGCAGCGAGACCGACAGCACGCAGAGGGGGATCGGGTCGATCCCCAG
* ** * * *
15956919 ATTGTGCATTTTGCCTCTCTGGTCGGTTG
130 CTTGCACATTTTGCCTCTCCGGCCGGTTC
*
15956948 AGCGGCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC
1 AGC-GCCGCACGCTCGTTTCGTGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC
** ** * * ***
15957013 AGTCGGATTGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGGGGGA-CAGGGTCGATCCATG
65 AACCGGACCGAGGGTTGTGGCAGCGAGACCGACAGCACGCAGAGGGGGATC-GGGTCGATCCCCA
*
15957077 GCTTGCACATTCTGCCTCTCCGGCCGG-TC
129 GCTTGCACATTTTGCCTCTCCGGCCGGTTC
* * *
15957106 GAGCGCCCCCACGATCGTTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 -AGCG-CCGCACGCTCGTTTCGTGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
15957169 ATACAGAGTT
Statistics
Matches: 414, Mismatches: 109, Indels: 28
0.75 0.20 0.05
Matches are distributed among these distances:
157 14 0.03
158 215 0.52
159 183 0.44
160 2 0.00
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (158 bp):
AGCGCCGCACGCTCGTTTCGTGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
ACCGGACCGAGGGTTGTGGCAGCGAGACCGACAGCACGCAGAGGGGGATCGGGTCGATCCCCAGC
TTGCACATTTTGCCTCTCCGGCCGGTTC
Found at i:15957191 original size:26 final size:26
Alignment explanation
Indices: 15957141--15957193 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15957131 GTTAGCTTAG
* *
15957141 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
15957167 GCATACAGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
15957193 G
1 G
15957194 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:15958075 original size:26 final size:26
Alignment explanation
Indices: 15958039--15958091 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15958029 GTTGACTTAG
15958039 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
15958065 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15958091 G
1 G
15958092 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15959100 original size:26 final size:26
Alignment explanation
Indices: 15959070--15959125 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
15959060 TGGGTTGGCT
*
15959070 TAAGCATCCGGAGTTCATT-CCATGTC
1 TAAGCATACGGAGTTCATTCCCA-GTC
15959096 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
15959122 TAAG
1 TAAG
15959126 ATCAGACCAG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 25 0.89
27 3 0.11
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:15959581 original size:11 final size:11
Alignment explanation
Indices: 15959565--15959595 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
15959555 CGGGGCACCG
15959565 TCGTCGGAGCA
1 TCGTCGGAGCA
15959576 TCGTCGGAGCA
1 TCGTCGGAGCA
*
15959587 TCGCCGGAG
1 TCGTCGGAG
15959596 AGCCTAACCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.16, C:0.29, G:0.39, T:0.16
Consensus pattern (11 bp):
TCGTCGGAGCA
Found at i:15960586 original size:26 final size:26
Alignment explanation
Indices: 15960550--15960602 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15960540 GTTAGCTTAT
*
15960550 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15960576 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15960602 G
1 G
15960603 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15961800 original size:26 final size:26
Alignment explanation
Indices: 15961761--15961810 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
15961751 GGCTTAGGCG
*
15961761 TACGAAGTTCATT-CCATGTCTAAGCA
1 TACGAAGTTAATTCCCA-GTCTAAGCA
15961787 TACGAAGTTAATTCCCAGTCTAAG
1 TACGAAGTTAATTCCCAGTCTAAG
15961811 ATCAGACCGG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.30
Consensus pattern (26 bp):
TACGAAGTTAATTCCCAGTCTAAGCA
Found at i:15961991 original size:26 final size:26
Alignment explanation
Indices: 15961955--15962007 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15961945 GTTGACTTAG
15961955 GCATAAGGAGTTCATCCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
* *
15961981 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
15962007 G
1 G
15962008 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATAAGGAGTTCATCCCCAGTCTAA
Found at i:15963535 original size:26 final size:26
Alignment explanation
Indices: 15963505--15963583 Score: 115
Period size: 26 Copynumber: 3.0 Consensus size: 26
15963495 GTTGGCTTAG
* *
15963505 GCATACAGAGTTCGTTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
15963531 GCATATGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
15963557 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
15963583 G
1 G
15963584 ATTGGACTGG
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
26 45 0.94
27 3 0.06
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:15964253 original size:26 final size:26
Alignment explanation
Indices: 15964224--15964279 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
15964214 TTTGTTGACT
15964224 TAAGCATACGAAGCTCATCCCCAGTC
1 TAAGCATACGAAGCTCATCCCCAGTC
* * *
15964250 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGAAGCTCATCCCCAGTC
15964276 TAAG
1 TAAG
15964280 ATTAGATCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.23
Consensus pattern (26 bp):
TAAGCATACGAAGCTCATCCCCAGTC
Found at i:15969869 original size:26 final size:26
Alignment explanation
Indices: 15969819--15969871 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15969809 GTTGACTTAG
*
15969819 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
15969845 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
15969871 G
1 G
15969872 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:15971160 original size:25 final size:25
Alignment explanation
Indices: 15971117--15971186 Score: 95
Period size: 25 Copynumber: 2.7 Consensus size: 25
15971107 AGGCATATGA
* *
15971117 AGTTCATCCCCAATCTAAGCATACGG
1 AGTTCAT-CCCAGTCTAAGCACACGG
*
15971143 AGTTCATCCCAGTATAAGCACACGG
1 AGTTCATCCCAGTCTAAGCACACGG
15971168 AGTTCATTCCCAGTCTAAG
1 AGTTCA-TCCCAGTCTAAG
15971187 ATTGGACCAG
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
25 21 0.54
26 18 0.46
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.24
Consensus pattern (25 bp):
AGTTCATCCCAGTCTAAGCACACGG
Found at i:15972431 original size:26 final size:26
Alignment explanation
Indices: 15972382--15972434 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15972372 GTTGGCTTAG
*
15972382 GCATACGGAGTTCATTCTATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
15972408 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
15972434 G
1 G
15972435 ATCAGATAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:15972972 original size:26 final size:26
Alignment explanation
Indices: 15972923--15972975 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15972913 GTTGGCTTAG
*
15972923 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCAGGTCTAA
*
15972949 GCATACGGAGTTCATTCTC-GGTCTAA
1 GCATACGAAGTTCATTC-CAGGTCTAA
15972975 G
1 G
15972976 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCAGGTCTAA
Found at i:15973676 original size:26 final size:26
Alignment explanation
Indices: 15973646--15973696 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15973636 GTTGACTTAG
15973646 GCATACGGAGTTCA-TCACCAGTCTAA
1 GCATACGGAGTTCATTC-CCAGTCTAA
*
15973672 GCATATGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
15973697 GGATCAGAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15973866 original size:26 final size:26
Alignment explanation
Indices: 15973830--15973882 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15973820 GGTGGCTTAG
15973830 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15973856 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15973882 G
1 G
15973883 ATTGGATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15974059 original size:26 final size:26
Alignment explanation
Indices: 15974029--15974078 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
15974019 TGACTTAGCC
15974029 ATACGAAGTTCATCCCCAGTCTAACT
1 ATACGAAGTTCATCCCCAGTCTAACT
* *
15974055 ATACGGAGTTCATTCCCAGTCTAA
1 ATACGAAGTTCATCCCCAGTCTAA
15974079 GATCACACTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (26 bp):
ATACGAAGTTCATCCCCAGTCTAACT
Found at i:15974240 original size:26 final size:26
Alignment explanation
Indices: 15974210--15974262 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15974200 GTTGACTTAG
15974210 GCATAC-AGAGTTCATCCCCAGTCTAA
1 GCATACGA-AGTTCATCCCCAGTCTAA
* *
15974236 GCATACGAAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
15974262 G
1 G
15974263 ATCAGACGAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:15974281 original size:183 final size:184
Alignment explanation
Indices: 15973620--15974355 Score: 513
Period size: 183 Copynumber: 3.9 Consensus size: 184
15973610 TGAGCGTCCT
* * * * * * *
15973620 CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCACCAGTCTAAGC-ATATGGAGTT
1 CACGCTCATTTCATAGGTTGACTTAGCCATACGAAGTTCATCCCCAGTCTAA-CTATACGAAGTT
* * * *** * *
15973684 CATTCCCAGTCTAGGATCAGAGTGGGTTGAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGCG
65 CATTCCCAGTCTAAGATCACACTGGAACGAGGGTTACGACAGCAGGATCGACAGCACGCAGGGGG
* * * * * * * * ***
15973749 GACTGGGCC-AGTCC-CTGGCTTGCACATTTTGCCTCTCCGGTC-AGCTGAGCACATG
130 GACTAGACCGA-TCCTC-GGCTTACGCATTCTACCTCTCTGGCCGA-CTGAGCACCCA
* * * * * * * * *
15973804 CACGCTCGTTTCGTGGGGTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGC-ATACGGAGT
1 CACGCTCATTTCATAGGTTGACTTAGCCATACGAAGTTCATCCCCA-GTCTAA-CTATACGAAGT
* ** ** * * * *
15973867 TCATTCCCAGTCTAAGATTGGATCAGACTTAGGGTTGCGACAGTAGGACCAACAGCAGGATCAAT
64 TCATTCCCAGTCT-A-A---GATCACAC-T--GG-AACGAGGGT--TA-CGACAGCAGGATCGAC
* * * * * * * *
15973932 AGCACGCAGGGAGGGATTGGGCCGATCTTCGGCTTGCGCATTCTGCCTTTCTGGCTGACTGAGCA
117 AGCACGCAGGG-GGGACTAGACCGATCCTCGGCTTACGCATTCTACCTCTCTGGCCGACTGAGCA
15973997 CCCA
181 CCCA
* * *
15974001 CATGCTCATTTCATGGGTTGACTTAGCCATACGAAGTTCATCCCCAGTCTAACTATACGGAGTTC
1 CACGCTCATTTCATAGGTTGACTTAGCCATACGAAGTTCATCCCCAGTCTAACTATACGAAGTTC
* * ** * *
15974066 ATTCCCAGTCTAAGATCACACTGGACCGAGGGTTACGACAGTAGGATCGGTAGCACGTAGGTGGG
66 ATTCCCAGTCTAAGATCACACTGGAACGAGGGTTACGACAGCAGGATCGACAGCACGCAGGGGGG
* * * * **
15974131 A-TCGACCGATCC-CTGGCTTTCGCATTCTACCTGTCTGGCCGACTGAGCGCCTG
131 ACTAGACCGATCCTC-GGCTTACGCATTCTACCTCTCTGGCCGACTGAGCACCCA
* * *
15974184 CACGTTCGTTTCATAGGTTGACTTAGGCATAC-AGAGTTCATCCCCAGTCTAAGC-ATACGAAGT
1 CACGCTCATTTCATAGGTTGACTTAGCCATACGA-AGTTCATCCCCAGTCTAA-CTATACGAAGT
* *
15974247 TTATTCCCAGTCTAAGATCAGAC-GAGAACGAGGGTTACGACAGCAGGATCGACAGCACGCAGGG
64 TCATTCCCAGTCTAAGATCACACTG-GAACGAGGGTTACGACAGCAGGATCGACAGCACGCAGGG
* * *
15974311 GGGACTAGGCCGATCCTCGACTTACGCATTCTACCTCTCTAGCCG
128 GGGACTAGACCGATCCTCGGCTTACGCATTCTACCTCTCTGGCCG
15974356 GTTGAGTGCC
Statistics
Matches: 448, Mismatches: 79, Indels: 50
0.78 0.14 0.09
Matches are distributed among these distances:
182 3 0.01
183 154 0.34
184 104 0.23
185 23 0.05
186 1 0.00
188 5 0.01
189 9 0.02
190 1 0.00
191 1 0.00
192 9 0.02
193 4 0.01
195 1 0.00
196 26 0.06
197 101 0.23
198 6 0.01
ACGTcount: A:0.23, C:0.26, G:0.27, T:0.24
Consensus pattern (184 bp):
CACGCTCATTTCATAGGTTGACTTAGCCATACGAAGTTCATCCCCAGTCTAACTATACGAAGTTC
ATTCCCAGTCTAAGATCACACTGGAACGAGGGTTACGACAGCAGGATCGACAGCACGCAGGGGGG
ACTAGACCGATCCTCGGCTTACGCATTCTACCTCTCTGGCCGACTGAGCACCCA
Found at i:15974420 original size:184 final size:185
Alignment explanation
Indices: 15973599--15974421 Score: 681
Period size: 184 Copynumber: 4.4 Consensus size: 185
15973589 CATCCTGCCA
* * * * *
15973599 CTCTGGTCGGCTGAGCGTCCTCAC-GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCA
1 CTCTGGCCGACTGAGCGCCCACACTGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCC
* * * *** *
15973663 CCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAGGATCAGA-GTGGGTTGAGGGTTGCGACAGC
66 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACG-AGAACGAGGGTTACGACAGC
* * * *
15973727 AGGATCGACAGCACGCAGGGCGGACTGGGCC-AGTCCCTGGCTTGCACATTTTGCCT
130 AGGATCGACAGCACGCAGGGGGGACTGGGCCGA-TCCCTGGCTTGCGCATTCTACCT
* * * *** * * *
15973783 CTCCGGTC-AGCTGAGCACATGCAC-GCTCGTTTCGTGGGGTGGCTTAGGCATACGGAGTTCAT-
1 CTCTGGCCGA-CTGAGCGCCCACACTGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATC
* ** *
15973845 TCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGATC-AG-ACTTAGGGTTGCGAC
65 CCCA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CGAGAAC-GAGGGTT---AC
* * * *
15973908 AGTAGGACCAACAGCAGGATCAATAGCACGCAGGGAGGGATTGGGCCGAT-CTTCGGCTTGCGCA
124 -----G----ACAGCAGGATCGACAGCACGCAGGG-GGGACTGGGCCGATCCCT-GGCTTGCGCA
*
15973972 TTCTGCCT
178 TTCTACCT
* * * * * *
15973980 TTCTGGCTGACTGAGCACCCACA-TGCTCATTTCATGGGTTGACTTAGCCATACGAAGTTCATCC
1 CTCTGGCCGACTGAGCGCCCACACTGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCC
* *
15974044 CCAGTCTAA-CTATACGGAGTTCATTCCCAGTCTAAGATCACACTG-GACCGAGGGTTACGACAG
66 CCAGTCTAAGC-ATACGGAGTTCATTCCCAGTCTAAGATCAGAC-GAGAACGAGGGTTACGACAG
* ** * * * * *
15974107 TAGGATCGGTAGCACGTAGGTGGGA-TCGACCGATCCCTGGCTTTCGCATTCTACCT
129 CAGGATCGACAGCACGCAGGGGGGACTGGGCCGATCCCTGGCTTGCGCATTCTACCT
* ** * * *
15974163 GTCTGGCCGACTGAGCGCCTGCAC-GTTCGTTTCATAGGTTGACTTAGGCATACAGAGTTCATCC
1 CTCTGGCCGACTGAGCGCCCACACTGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCC
* *
15974227 CCAGTCTAAGCATACGAAGTTTATTCCCAGTCTAAGATCAGACGAGAACGAGGGTTACGACAGCA
66 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACGAGAACGAGGGTTACGACAGCA
* * *
15974292 GGATCGACAGCACGCAGGGGGGACTAGGCCGAT-CCTCGACTTACGCATTCTACCT
131 GGATCGACAGCACGCAGGGGGGACTGGGCCGATCCCT-GGCTTGCGCATTCTACCT
* ** * * * * * *
15974347 CTCTAGCCGGTTGAGTGCCCACACTCCT-GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAT-T
1 CTCTGGCCGACTGAGCGCCCACACTGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCC
15974410 CCATGTCTAAGC
66 CCA-GTCTAAGC
15974422 CCCAGCCAGA
Statistics
Matches: 509, Mismatches: 95, Indels: 70
0.76 0.14 0.10
Matches are distributed among these distances:
182 1 0.00
183 159 0.31
184 177 0.35
185 21 0.04
187 1 0.00
189 1 0.00
192 1 0.00
194 2 0.00
196 27 0.05
197 113 0.22
198 6 0.01
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.25
Consensus pattern (185 bp):
CTCTGGCCGACTGAGCGCCCACACTGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCC
CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACGAGAACGAGGGTTACGACAGCA
GGATCGACAGCACGCAGGGGGGACTGGGCCGATCCCTGGCTTGCGCATTCTACCT
Found at i:15974742 original size:26 final size:26
Alignment explanation
Indices: 15974712--15974764 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15974702 GTTGGCTTAG
15974712 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15974738 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15974764 G
1 G
15974765 TTCAGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15975417 original size:26 final size:27
Alignment explanation
Indices: 15975380--15975431 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 27
15975370 TTTTGTGGGT
15975380 TGCCTTAAGCATACGGAGTTCATTCCA
1 TGCCTTAAGCATACGGAGTTCATTCCA
15975407 TGCC-TAAGCATACGGAGTTCATTCC
1 TGCCTTAAGCATACGGAGTTCATTCC
15975432 CAGTCTAAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (27 bp):
TGCCTTAAGCATACGGAGTTCATTCCA
Found at i:15975621 original size:26 final size:26
Alignment explanation
Indices: 15975585--15975637 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15975575 GTTGACTTAG
*
15975585 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
15975611 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15975637 G
1 G
15975638 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15977058 original size:26 final size:26
Alignment explanation
Indices: 15977006--15977058 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15976996 ATTGACTTAG
*
15977006 GCATACGGAGTTCATCCCCAATTTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
15977032 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
15977058 G
1 G
15977059 ATCGAACTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:15977404 original size:710 final size:702
Alignment explanation
Indices: 15974184--15977404 Score: 2728
Period size: 710 Copynumber: 4.6 Consensus size: 702
15974174 TGAGCGCCTG
* * * * *
15974184 CACGTTCGTTTCATAGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGAAGTTT
1 CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTC
* * * * *
15974249 ATTCCCAGTCTAAGATC-AGACGAGAACGAGGGTTACGACAGCAGGATCGACAGCACGCAGGGGG
66 ATTCCCAGTCTAAGATCGA-ACGA-ACCGAGGGTTGCGTCAGCAGGATCGAAAGCACGCAAGGGG
* * * * * * ** ** * * *
15974313 GA-CTAGGCCGATCCTCGACTTACGCATTCTACCTCT-CTAGCCGGTTGAGTGCCCACACTCCTG
129 GATCGA-GTCGATCC-CGGCTTGCGCATTCTGCCTCTCCGA-CCGACTGAGCACCCGCACACCCG
*
15974376 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTT
191 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTT
* * * * * *
15974441 GTGGCAGTGGGA-TCGACAGCACGTAGAGGGGGA-CCAAGTCGAT-CCTCAGCTTGCGCATTATG
256 GTGGCAGCGGGACT-GGCAGCA-GAAGAAGGGGATCGAGGT-GATCCCT-AGCTTGCGCATTATG
* ** * ** * * *
15974503 CCTCTCCGATCGGCTCAACGCCCGAATGCTCATTTTATGGGTTGAGTTTGGCATACGAAGTTCAT
317 CCTCTCCGGTCGGCTCAGTGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * * * * * ** *
15974568 TCCCAGTCTAAGATCAGACCGGACTGAAGGTTGCGATAGCAGGATCGATAGCTCATAGAAAGGGA
382 TCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGATAGCAAGATCGACAACACGCAG-GAGGGA
* ** * * ** * * * *
15974633 CTGGACCGATCCTC-GACTTAG-GCATTCTGGCTCTCCGATCGGCTGAGTGTCCACAAGCTCGTT
446 CAGGGTCGATCCCCTGACTT-GCACATTCTACCTCT-CGATCGGCTGAGCGCCCGC-AGCTCATT
* *
15974696 TCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTC
508 TCATGGATTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTC
* ** * * * * * * *
15974761 TAAGTTCAGACTGGATCGAGGGTTATGAAAGTAGGACCAGCAGCAGGATCGGCAGCACGTAAGAG
573 TAAGATCAGACCAGACCGAGGGTTACGATAGCAGAACCAGCAGCAGGATCGACAGCACGT-AGGG
* ** * * *
15974826 GGGACCGAACCGATCCCCGGCTTACGCATTCTACCTCTTCG-G---T-T-GAT---TGAGCA-CC
637 GGGACCGAGCCGATCCCCAACTTGCACATTCTACCTCTCCGTGACCTCTCGATGACTGAGCACCC
*
15974881 G
702 A
* * * **
15974882 CACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTTAACCCCAGTCTAAGCATATAGAGTTC
1 CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTC
* ** * * *
15974947 ATTCCCAGTCTAAGATCGAACTGGACCGACAGTTGCAGT-AGCAAGATTGGCAA-CAC-C-AGAG
66 ATTCCCAGTCTAAGATCGAAC-GAACCGAGGGTTGC-GTCAGCAGGA-TCGAAAGCACGCAAG-G
* ** ** * *
15975008 GGGATCGAGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGGTTGAGCACTTGCACGCCTG
127 GGGATCGAGTCGATCCC-GGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCACCCGCACACCCG
* * *
15975073 TTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGAACCGAGGGTT
191 TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTT
* * * * **
15975138 GTGGTAGCGGGACTGGCAGCA-AACATAGGGGGTCTG-GGCCGATCCCCGGCTTGCGCATTATGC
256 GTGGCAGCGGGACTGGCAGCAGAAGA-AGGGGATC-GAGG-TGATCCCTAGCTTGCGCATTATGC
* * * * *
15975201 CTATCCGGTCGGCTCAGTGCCCGAACGTTCGTTTCGTGGGTTGACTTATGCATATGGAGTTCATT
318 CTCTCCGGTCGGCTCAGTGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
* * * * * * * **
15975266 CCTAGTCTAAGATCTGATCGGACCGAGGGTTGCGACAGCAGGATCAACAACATGCA-GAGGGATT
383 CCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGATAGCAAGATCGACAACACGCAGGAGGGACA
* *
15975330 GGGTCGGT-CCCTGACTTGCACATTCTACCTCTC-A-C-GCT---------CA--T--TTT-GTG
448 GGGTCGATCCCCTGACTTGCACATTCTACCTCTCGATCGGCTGAGCGCCCGCAGCTCATTTCATG
* * * * *
15975377 GGTTGCCTTAAGCATACGGAGTTCATTCCATGCCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
513 GATTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * * * * **
15975442 TCGGACCGGACTGAAGGATGCGATAGCA-AGACCAGCAGCATGATCGACAGCACACAGGAGGGGA
578 TCAGACCAGACCGAGGGTTACGATAGCAGA-ACCAGCAGCAGGATCGACAGCACGTAGG-GGGGA
* * * ** **
15975506 CCGGGCTGATCCCTAACTTGTGCATTCTACCTCTCCG-G-----TC-A-G-CTGAGCGTCCA
641 CCGAGCCGATCCCCAACTTGCACATTCTACCTCTCCGTGACCTCTCGATGACTGAGCACCCA
* * *
15975559 CACGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACGGAGTTC
1 CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTC
* ** * *
15975624 ATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGT-AATAGGATC-AGCAGCATGC-AGGG
66 ATTCCCAGTCTAAGATCGAACGA-ACCGAGGGTTGC-GTCAGCAGGATCGA-AAGCACGCAAGGG
* *
15975686 GGATCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACACCCGT
128 GGATCGAGTCGATCCC-GGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCACCCGCACACCCGT
* ** * * *
15975751 TTCATGGGTTGGCTTAGGCATAGGGAGTTTGTTCCATGTCTAAGCCCTAACCGGATCGAGGGTTG
192 TTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTG
* * * * * * * *
15975816 TGGTAGTGGGACCGACAGCATGTAGAGGGGGATCGAGCTGATCCCT-GACTTACGCATTATGCCT
257 TGGCAGCGGGACTGGCAGCA-GAAGAAGGGGATCGAGGTGATCCCTAG-CTTGCGCATTATGCCT
* * * * * *
15975880 CTTCGGCCAGCTCAGTGCCTGAACGCTCATTTCGTGGGTTAACTTAGGCATACAGAGTTCATTCC
320 CTCCGGTCGGCTCAGTGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * ** * * *
15975945 CAGTCTAAGATCAGATCGGACCGAGGATTGTGGCAG-AAGGATCGACAGCACGCGGGGGGGGACA
385 CAGTCTAAGATCAGACCGGACCGAGGGTTGCGATAGCAA-GATCGACAACACGC-AGGAGGGACA
* * * * * * * * * *
15976009 GGG-CTGGTCCCC-GGCTTGCACATTTTGCTTCTCTGGTCGACTGAGCGCCTGTACGCTCATTGC
448 GGGTC-GATCCCCTGACTTGCACATTCTACCTCTC-GATCGGCTGAGCGCCCGCA-GCTCATTTC
* *
15976072 AT-GATTTGGCTGAGGCATACAAAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCT
510 ATGGA-TTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * * **
15976136 AAGATCAGACTAGACCGAGGGTTAC-AGCAGCAGGACCAATAGCAGGATCGACAGCACGTAGGGG
574 AAGATCAGACCAGACCGAGGGTTACGA-TAGCAGAACCAGCAGCAGGATCGACAGCACGTA-GGG
* * * * * * ** * ** *
15976200 GGGACTGGGTCAATTCTCGGCTTGCGCATTCTACCTCTCCGACCAACCTCTCTGGTAGACTGAGC
637 GGGACCGAGCCGATCCCCAACTTGCACATTCTACCTCTCCG--TGACCTCTC-GAT-GACTGAGC
* *
15976265 GCCCG
698 ACCCA
* * ** * * *
15976270 TATGCTCGTTTTGTGGGTTGACTTAGGTATACGGAGTTCATCTCCAGTCTAAGCATATGGAGTTC
1 CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTC
* * * * * *
15976335 ATTCCCAATCTAAGATCAGACCGAACCGAAGGTTGCGACAGCAGGATCGATAGCACG-TAGGAGG
66 ATTCCCAGTCTAAGATC-GAACGAACCGAGGGTTGCGTCAGCAGGATCGAAAGCACGCAAGG-GG
* ** ** * * * * * * *
15976399 GATCG-GATTGATCCTCGATTTATGCATTCTACCTCTCCGATCGACTGATCACCTGTACGCTCGT
129 GATCGAG-TCGATCC-CGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCACCCGCACACCCGT
* * * *
15976463 TTCGTGGGTTGGCTTCGACATAGGGAGTTCATTCCATGTGTAAGCCCCAGCCAGACCGAGGGTTG
192 TTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTG
* * * * * ** ** *
15976528 TGGCAGCGGGGCTGGTAGCACACAGAAGAGGACCGAGCCGATCCCCGGCTTGGGCATTATGCCTC
257 TGGCAGCGGGACTGGCAGCAGA-AGAAGGGGATCGAGGTGATCCCTAGCTTGCGCATTATGCCTC
** * * * *
15976593 TCCGG-CTGGCTCAGCACCCAAACGCTCATTTTGTGGGTTGACTTAGGCATACAGAGTTCGTTCC
321 TCCGGTC-GGCTCAGTGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
** * * * * *
15976657 CAGTCTAAGATTGGACCAGATCGAGTGTTGCGATAGCAAGATCGATAACACGCAGGGGGGATC-G
385 CAGTCTAAGATCAGACCGGACCGAGGGTTGCGATAGCAAGATCGACAACACGCAGGAGGGA-CAG
* * * * *
15976721 GGTCGATCCCCTG-CTTGCGCATTCTACCTCTTCGATTGGCTAAGCGCCCGCATGCTCGTTTTAT
449 GGTCGATCCCCTGACTTGCACATTCTACCTC-TCGATCGGCTGAGCGCCCGCA-GCTCATTTCAT
* *
15976785 GGATTGGCTTAGGCATACAGAGTTCATTCGATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAG
512 GGATTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
* * * *
15976850 ATC-GTACCAGACCGAGGGTTACGGTAGCCA-AACTAGTAGCAAGATCGACAGCACGTAGGGGGG
577 ATCAG-ACCAGACCGAGGGTTACGATAG-CAGAACCAGCAGCAGGATCGACAGCACGTAGGGGGG
* * *
15976913 ACCGAGCCGATCCCCAACTTGCACGTTCTGCCTCTCCGATCGACCTCTTCGATCGATTGAGCACC
640 ACCGAGCCGATCCCCAACTTGCACATTCTACCTCTCCG-T-GACCTC-TCGAT-GACTGAGCACC
15976978 CA
701 CA
* * *
15976980 CACGCTCGTTTCATGGATTGACTTAGGCATACGGAGTTCATCCCCAATTTAAGCATACGGAGTTC
1 CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTC
* * *
15977045 ATTCCCAGTCTAAGATCGAACTGAACCGAGGGTTGCGTCAGTAGGATCGAAAGCACGTAAAGGGG
66 ATTCCCAGTCTAAGATCGAAC-GAACCGAGGGTTGCGTCAGCAGGATCGAAAGCACGCAAGGGGG
* * *
15977110 ATCGAATCGATCCCGGGCTTGTGCATTCTGCCTCTCCGACCGACTGAGCACCCACACACCCGTTT
130 ATCGAGTCGATCCC-GGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCACCCGCACACCCGTTT
* *
15977175 CGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACTGAGGGTTGTG
194 CGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTG
* * * *
15977240 GCAGCGAGACTGGCAACATGAAGAAGGGGATCGAGGTGATCCCTAGCTTGCACATTATGCCTCTT
259 GCAGCGGGACTGGCAGCA-GAAGAAGGGGATCGAGGTGATCCCTAGCTTGCGCATTATGCCTCTC
* * * *
15977305 CGGTTGGCTCAGTGCCCGAACGCTCATTTCATTGGTTGACTTAGGCATACGGAGTTTATTCCCAG
323 CGGTCGGCTCAGTGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * *
15977370 TCTAAGATCAGACCGAACAGAGGGTTGTGATAGCA
388 TCTAAGATCAGACCGGACCGAGGGTTGCGATAGCA
15977405 GGACCAGCAG
Statistics
Matches: 1999, Mismatches: 426, Indels: 184
0.77 0.16 0.07
Matches are distributed among these distances:
675 4 0.00
676 145 0.07
677 350 0.18
678 11 0.01
679 31 0.02
680 3 0.00
681 1 0.00
682 2 0.00
683 2 0.00
691 3 0.00
692 2 0.00
693 1 0.00
694 4 0.00
695 29 0.01
696 6 0.00
697 241 0.12
698 227 0.11
699 8 0.00
706 2 0.00
709 4 0.00
710 396 0.20
711 267 0.13
712 256 0.13
713 4 0.00
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (702 bp):
CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTC
ATTCCCAGTCTAAGATCGAACGAACCGAGGGTTGCGTCAGCAGGATCGAAAGCACGCAAGGGGGA
TCGAGTCGATCCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCACCCGCACACCCGTTTCG
TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGC
AGCGGGACTGGCAGCAGAAGAAGGGGATCGAGGTGATCCCTAGCTTGCGCATTATGCCTCTCCGG
TCGGCTCAGTGCCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
AAGATCAGACCGGACCGAGGGTTGCGATAGCAAGATCGACAACACGCAGGAGGGACAGGGTCGAT
CCCCTGACTTGCACATTCTACCTCTCGATCGGCTGAGCGCCCGCAGCTCATTTCATGGATTGGCT
TAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
GACCGAGGGTTACGATAGCAGAACCAGCAGCAGGATCGACAGCACGTAGGGGGGACCGAGCCGAT
CCCCAACTTGCACATTCTACCTCTCCGTGACCTCTCGATGACTGAGCACCCA
Found at i:15977515 original size:26 final size:26
Alignment explanation
Indices: 15977479--15977575 Score: 151
Period size: 26 Copynumber: 3.7 Consensus size: 26
15977469 GCCTCTCCGA
15977479 AGTTCATTCCCAGTCTAAGCATATGG
1 AGTTCATTCCCAGTCTAAGCATATGG
*
15977505 AGTTCATTCCCAGTCTAAGCATATAG
1 AGTTCATTCCCAGTCTAAGCATATGG
*
15977531 AGTTCA-TCCCTAGTCTAAGCATACGG
1 AGTTCATTCCC-AGTCTAAGCATATGG
*
15977557 AGTTCATTCCTAGTCTAAG
1 AGTTCATTCCCAGTCTAAG
15977576 AATGGATCAG
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
25 4 0.06
26 58 0.89
27 3 0.05
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.31
Consensus pattern (26 bp):
AGTTCATTCCCAGTCTAAGCATATGG
Found at i:15978038 original size:158 final size:158
Alignment explanation
Indices: 15977549--15978366 Score: 674
Period size: 158 Copynumber: 5.2 Consensus size: 158
15977539 CCTAGTCTAA
* *
15977549 GCATACGGAGTTCATTCC-TAGTCTAAGAAT-GGATC-AGACCGAGGGTTGCGACAGCAGGATCG
1 GCATACGGAGTTCATTCCAT-GTCTAAG-ATCAGA-CGAGACCGAGGGTTGCGGCAGCAGGATCG
* * * ** * *
15977611 ATAGCAC-TCA-AGGGGGATCGAGTCGATCCATGGCTTGTGCATTCTGCCTCTCCAGCCGGCTGA
63 ACAGCACGT-AGAGGGGGATCGGGTAGATCCCCGGCTTG-GCATTCTGCCTCACCGGCCGGCTGA
* * *
15977674 GCGCCCGCACGC-CTGTTTCATGGGTTGGGTTAC
126 GCGCCCGCACGCTC-GTTTCGTGGGTTGGCTTAG
* * ** * * *** *
15977707 GCATAGGGATTTCATTCCATGTCTAAGCCCTAGCCGA-ACCGAGGGTTGTGGCAATGGGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAAGATC-AGACGAGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * * * * * * *
15977771 AGCACGTAAAGGTGGACCGGGCT-GATCCCCGGCTTGCGCATTATGCCTCTCCAGCCGACTCAGT
65 AGCACGTAGAGGGGGATCGGG-TAGATCCCCGGCTTG-GCATTCTGCCTCACCGGCCGGCTGAGC
**
15977835 GCCCAAACGCTCGTTTCGTGGGTTGGCTTAG
128 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
15977866 GCATATGGAGTTCATTCCCA-GTCTAAGATCAGATGAGACTGAGGGTTGCGGTAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACGAGACCGAGGGTTGCGGCAGCAGGATCGAC
* * * ** *
15977930 AGCACGTAGAGGGGGACCGGGTAGGTCCCCGACTTGGCATTCTGCCTCACCGGTTGGCTGAACGC
65 AGCACGTAGAGGGGGATCGGGTAGATCCCCGGCTTGGCATTCTGCCTCACCGGCCGGCTGAGCGC
*
15977995 CCGCACGCTCGTTTCGTGGGTTGACTTAG
130 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
** * * * *
15978024 GCATACGGAGTTCATTCCATGTCTAAGCCCTAGCCGA-ACCGAGGGTTG-TGCAGC-GAGACCGG
1 GCATACGGAGTTCATTCCATGTCTAAGATC-AGACGAGACCGAGGGTTGCGGCAGCAG-GATCGA
* * * * * * * ** * *
15978086 CAGCACGCAGAGGGGGATCAGGTCGATCCTCGGCTTACGTATTATGCCTCACCGGTTGGCTCAGT
64 CAGCACGTAGAGGGGGATCGGGTAGATCCCCGGCTT-GGCATTCTGCCTCACCGGCCGGCTGAGC
* * * * *
15978151 GCTCGAACACTCGTTTCATGGGTTGACTTAG
128 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * * *
15978182 GCATATGAAGTTCATTCCCA-GTCTAAGATCGGACGGGACCGAGGGTTGCGGCAGTAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACGAGACCGAGGGTTGCGGCAGCAGGATCGAC
* ** * * * * * *
15978246 AGCACGCAG-GAGAAGATCGGGTAGGTCCCCTGCTTGGCATTCTACCTCACCGACCGACTGAGCA
65 AGCACGTAGAG-GGGGATCGGGTAGATCCCCGGCTTGGCATTCTGCCTCACCGGCCGGCTGAGCG
*
15978310 CCCGCACGCTCGTTTCGTGGATTGGCTTAG
129 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
15978340 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
15978367 CATATGGAGT
Statistics
Matches: 518, Mismatches: 121, Indels: 42
0.76 0.18 0.06
Matches are distributed among these distances:
156 1 0.00
157 46 0.09
158 280 0.54
159 185 0.36
160 6 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACGAGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACGTAGAGGGGGATCGGGTAGATCCCCGGCTTGGCATTCTGCCTCACCGGCCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:15978232 original size:316 final size:316
Alignment explanation
Indices: 15977557--15978367 Score: 963
Period size: 316 Copynumber: 2.6 Consensus size: 316
15977547 AAGCATACGG
* * *
15977557 AGTTCATTCCTAGTCTAAGAAT-GGATC-AGACCGAGGGTTGCGACAGCAGGATCGATAGCAC-T
1 AGTTCATTCCCAGTCTAAG-ATCGGA-CGAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGT
* * * ** * *
15977619 CA-AGGGGGATCGAGTCGATCCATGGCTTGTGCATTCTGCCTCTCCAGCCGGCTGAGCGCCCGCA
64 -AGAGGGGGATCGGGTAGGTCC-CCGCTTG-GCATTCTGCCTCACCGGCCGGCTGAGCGCCCGCA
* * * * *
15977683 CGC-CTGTTTCATGGGTTGGGTTACGCATAGGGATTTCATTCCATGTCTAAGCCCTAGCCGAACC
126 CGCTC-GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGCCGAACC
* * * * * *
15977747 GAGGGTTGTGGCAATGGGACCGACAGCACGTAAAGGTGGACCGGGCTGATCCCCGGCTTGCGCAT
190 GAGGGTTGTGGCAACGAGACCGACAGCACGCAAAGGGGGACAGGGCTGATCCCCGGCTTACGCAT
* * * * *
15977812 TATGCCTCTCCAGCCGACTCAGTGCCCAAACGCTCGTTTCGTGGGTTGGCTTAGGCATATGG
255 TATGCCTCACCAGCCGACTCAGTGCCCAAACACTCGTTTCATGGGTTGACTTAGGCATATGA
* * * *
15977874 AGTTCATTCCCAGTCTAAGATCAGATGAGACTGAGGGTTGCGGTAGCAGGATCGACAGCACGTAG
1 AGTTCATTCCCAGTCTAAGATCGGACGAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAG
* ** *
15977939 AGGGGGACCGGGTAGGTCCCCGACTTGGCATTCTGCCTCACCGGTTGGCTGAACGCCCGCACGCT
66 AGGGGGATCGGGTAGGTCCCCG-CTTGGCATTCTGCCTCACCGGCCGGCTGAGCGCCCGCACGCT
*
15978004 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGCCGAACCGAGGG
130 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGCCGAACCGAGGG
* * * * * *
15978069 TTGT-GCAGCGAGACCGGCAGCACGCAGAGGGGGATCAGGTC-GATCCTCGGCTTACGTATTATG
195 TTGTGGCAACGAGACCGACAGCACGCAAAGGGGGA-CAGGGCTGATCCCCGGCTTACGCATTATG
* ** * * *
15978132 CCTCACCGGTTGGCTCAGTGCTCGAACACTCGTTTCATGGGTTGACTTAGGCATATGA
259 CCTCACCAGCCGACTCAGTGCCCAAACACTCGTTTCATGGGTTGACTTAGGCATATGA
* * *
15978190 AGTTCATTCCCAGTCTAAGATCGGACGGGACCGAGGGTTGCGGCAGTAGGATCGACAGCACGCAG
1 AGTTCATTCCCAGTCTAAGATCGGACGAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAG
** * * * *
15978255 -GAGAAGATCGGGTAGGTCCCCTGCTTGGCATTCTACCTCACCGACCGACTGAGCACCCGCACGC
66 AG-GGGGATCGGGTAGGTCCCC-GCTTGGCATTCTGCCTCACCGGCCGGCTGAGCGCCCGCACGC
*
15978319 TCGTTTCGTGGATTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
129 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
15978368 ATATGGAGTT
Statistics
Matches: 419, Mismatches: 66, Indels: 19
0.83 0.13 0.04
Matches are distributed among these distances:
315 1 0.00
316 246 0.59
317 151 0.36
318 21 0.05
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (316 bp):
AGTTCATTCCCAGTCTAAGATCGGACGAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTAG
AGGGGGATCGGGTAGGTCCCCGCTTGGCATTCTGCCTCACCGGCCGGCTGAGCGCCCGCACGCTC
GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGCCGAACCGAGGGT
TGTGGCAACGAGACCGACAGCACGCAAAGGGGGACAGGGCTGATCCCCGGCTTACGCATTATGCC
TCACCAGCCGACTCAGTGCCCAAACACTCGTTTCATGGGTTGACTTAGGCATATGA
Found at i:15978571 original size:26 final size:26
Alignment explanation
Indices: 15978535--15978587 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15978525 GTTGACCTAG
15978535 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
15978561 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15978587 G
1 G
15978588 ATCGGATTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15978744 original size:183 final size:183
Alignment explanation
Indices: 15978182--15978745 Score: 544
Period size: 183 Copynumber: 3.0 Consensus size: 183
15978172 GTTGACTTAG
* * * * *
15978182 GCATATGAAGTTCATTCCCAGTCTAAGATCGGA-CGGGACCGAGGGTTGCGGCAGTAGGATCGAC
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATC-GGATCGAGGGTTACGACAGCAGGATCGAC
* * * * *
15978246 AGCACGCAGGAGAAGATCGGGTAGGTCCCCTG-CTTG-GCATTCTACCTCACCGACCGACTGAGC
65 AGCACGCAGG-G-GGATCGGGTCGAT-CCCTGACTTGTGCATTCTGCCTCTCCGACCGACTGAGC
* * *
15978309 ACCCGCACGCTCGTTTCGTGGATTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
127 GCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
** * * *
15978366 GCATATGGAGTTCATTCGTAGTCTAAGTTCAGATCGGATCGAAGGTTGTGACAGTAGGACCAGCA
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCG-AGG--GT-----TACGA-CAGC-
** * * * * * *
15978431 GTAGGATCGGTAGCACGCAAGGGGA-CTGGGTCGATCCCTGACTTTTTCATTTTGCCTTTTCGAC
56 --AGGATCGACAGCACGCAGGGGGATC-GGGTCGATCCCTGACTTGTGCATTCTGCCTCTCCGAC
* * * * * *
15978495 CGACTGAGCGCCCACACGTTTGTTTTGTGGGTTGACCTAGGCATACGGAGTTCATCCCCA-GTCT
118 CGACTGAGCGCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCT
15978559 AA
182 AA
**
15978561 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATTAGATCGAGGGTTACGACAGCAGGATCGACA
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTACGACAGCAGGATCGACA
* ** ** *
15978626 GCACGCAGGGGGATCGGGCCGATCCCTGACTTGTGCATTCTGCCTCTCCGGTCGGTTGAGTGCCC
66 GCACGCAGGGGGATCGGGTCGATCCCTGACTTGTGCATTCTGCCTCTCCGACCGACTGAGCGCCC
* * *
15978691 ACGCGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
131 ACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
15978744 GC
1 GC
15978746 CCCAGCCAGA
Statistics
Matches: 299, Mismatches: 62, Indels: 39
0.75 0.16 0.10
Matches are distributed among these distances:
182 3 0.01
183 101 0.34
184 34 0.11
185 4 0.01
186 4 0.01
187 6 0.02
192 4 0.01
193 9 0.03
194 14 0.05
195 101 0.34
196 19 0.06
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (183 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTACGACAGCAGGATCGACA
GCACGCAGGGGGATCGGGTCGATCCCTGACTTGTGCATTCTGCCTCTCCGACCGACTGAGCGCCC
ACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:15980445 original size:26 final size:26
Alignment explanation
Indices: 15980408--15980460 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15980398 GTTGGATTAG
15980408 GCATACAAAGTTCATTCCAAGTCTAA
1 GCATACAAAGTTCATTCCAAGTCTAA
* *
15980434 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCAAGTCTAA
15980460 G
1 G
15980461 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCAAGTCTAA
Found at i:15982178 original size:26 final size:26
Alignment explanation
Indices: 15982128--15982180 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15982118 GTTGGCTTAG
*
15982128 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATATCTAA
*
15982154 GCATATGAAGTTCATTCCCA-ATCTAA
1 GCATACGAAGTTCATT-CCATATCTAA
15982180 G
1 G
15982181 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATATCTAA
Found at i:15983391 original size:26 final size:26
Alignment explanation
Indices: 15983352--15983401 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
15983342 GGCTTAGGCG
15983352 TACGGAGTTAATT-CCATGTCTAAGCA
1 TACGGAGTTAATTCCCA-GTCTAAGCA
*
15983378 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTAATTCCCAGTCTAAG
15983402 ATCAGATCAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTAATTCCCAGTCTAAGCA
Found at i:15984054 original size:26 final size:26
Alignment explanation
Indices: 15984025--15984077 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15984015 TTTGGCTTAG
15984025 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
15984051 GCATACTGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15984077 G
1 G
15984078 ATTGGATGGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15984195 original size:195 final size:195
Alignment explanation
Indices: 15983940--15984416 Score: 502
Period size: 195 Copynumber: 2.5 Consensus size: 195
15983930 AGCACGTAGG
* * *
15983940 GGGGGATCGGGCCGATCCTCGGCTTGTGCATTCTGCCTCTCCGGTCGACTGAGTGCCCACATGCT
1 GGGGGATCGGGCCGATCCTCGGCTTGTGCATTCTGCCTCTCCGGTCGACTGAGCGCCCACACGAT
* * *
15984005 AGTTTCGA-GGTTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACTG-AGTTCATT
66 AGTTTC-ATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATAC-GAAGTTCATT
**
15984067 CCCAGTCTAAGATTGGATGGGACCGAGGGTTGCGGCAGTAGGACTAGCAGTAGGATCGACAACAC
128 CCCAGTCTAAGATTGGACAGGACCGAGGGTTGCGGCAGTAGGACTAGCAGTAGGATCGACAACAC
15984132 GCA
193 GCA
* * **
15984135 GGGGGATCGGGGCGATCC-CTGGCTTGTGCATTCTGCCTCTTCGGTCGGTTGAGCGCCCACACGA
1 GGGGGATCGGGCCGATCCTC-GGCTTGTGCATTCTGCCTCTCCGGTCGACTGAGCGCCCACACGA
* * *
15984199 TCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTACGCATACGAAGTTCATTCC
65 TAGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCC
* * ** * *
15984264 CAGTTTAAGATTGGACAGGCCCGAGGGTTATGGCAGCAGGA-T--CGGTA-G-TC--C-ACA-G-
130 CAGTCTAAGATTGGACAGGACCGAGGGTTGCGGCAGTAGGACTAGCAGTAGGATCGACAACACGC
15984319 -
195 A
* * * * * * * *
15984319 GGGGGACCAGGCTGATCCCCGGCTAGCGCATTCTGCCTCTCC-GACTGACTGAGCGCCCACACGC
1 GGGGGATCGGGCCGATCCTCGGCTTGTGCATTCTGCCTCTCCGGTC-GACTGAGCGCCCACACGA
* *
15984383 TCA-TTTCATGGGTTGGCTTAGGCATAGGGAGTTC
65 T-AGTTTCATGGGTTGACTTAGGCATACGGAGTTC
15984417 GTTCCATGTC
Statistics
Matches: 240, Mismatches: 35, Indels: 25
0.80 0.12 0.08
Matches are distributed among these distances:
183 2 0.01
184 78 0.32
185 1 0.00
186 1 0.00
187 3 0.01
188 1 0.00
190 2 0.01
191 1 0.00
192 4 0.02
194 4 0.02
195 140 0.58
196 3 0.01
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (195 bp):
GGGGGATCGGGCCGATCCTCGGCTTGTGCATTCTGCCTCTCCGGTCGACTGAGCGCCCACACGAT
AGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCC
AGTCTAAGATTGGACAGGACCGAGGGTTGCGGCAGTAGGACTAGCAGTAGGATCGACAACACGCA
Found at i:15984731 original size:158 final size:158
Alignment explanation
Indices: 15984538--15984905 Score: 463
Period size: 158 Copynumber: 2.3 Consensus size: 158
15984528 CAATGGCTGA
* * * *
15984538 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-TGAATCGGAC
1 ACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ATAGGAC
** *
15984602 TGAGGGTTACGGCAGCAGGATCGATAGCA-CATAGGGGGGATCAGGCCGGACCCTAGCTTGCACA
65 TGAACGTTACGGCAGCAGGATCGATAGCATCAT-GGGGGGACCAGGCCGGACCCTAGCTTGCACA
* *
15984666 TTATGCCACTCCGATCGGTTGAGCGCCCGC
129 TTATGCCACTCCAATCGGCTGAGCGCCCGC
* *
15984696 ACGCTTGTTTCATGGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGATAGGACT
1 ACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATAGGACT
** * * * * * * *
15984761 GAACGTTGTGGTAGTAGGATCGATAGCATGATGGGGGGACCGGGTCGGTCCCTAGCTTGCGCATT
66 GAACGTTACGGCAGCAGGATCGATAGCATCATGGGGGGACCAGGCCGGACCCTAGCTTGCACATT
* * *
15984826 CTGCCTCTCCAATCGGCTGAGTGCCCGC
131 ATGCCACTCCAATCGGCTGAGCGCCCGC
* *
15984854 ACGCTTGTTTCATGGGTTGCCTTAGGCATACGGAGTTTATT-CCATGTCTAAG
1 ACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG
15984906 CATACGGAGT
Statistics
Matches: 181, Mismatches: 26, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
157 3 0.02
158 175 0.97
159 3 0.02
ACGTcount: A:0.20, C:0.23, G:0.30, T:0.27
Consensus pattern (158 bp):
ACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATAGGACT
GAACGTTACGGCAGCAGGATCGATAGCATCATGGGGGGACCAGGCCGGACCCTAGCTTGCACATT
ATGCCACTCCAATCGGCTGAGCGCCCGC
Found at i:15984908 original size:26 final size:26
Alignment explanation
Indices: 15984879--15984931 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15984869 GTTGCCTTAG
*
15984879 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15984905 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15984931 G
1 G
15984932 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15985138 original size:184 final size:184
Alignment explanation
Indices: 15984721--15985138 Score: 491
Period size: 184 Copynumber: 2.3 Consensus size: 184
15984711 GTTGGCTTAG
* * * ** *
15984721 GCATATGGAGTTCATTCCCAGTCTAAGATCAGATAGGACTGAACGTTGTGGTAGTAGGATCGATA
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATAGGACTGAAGGTTGCGACAGTAGGATCGACA
* * * ** **
15984786 GCATGATGGGGGGACCGGGTCGGTCCCTAGCTTGCGCATTCTGCCTCTCCAATCGGCTGAGTGCC
66 GCATGATGGGGGGACCGGGCCGATCCCTAGCTTGCGCATTCTGCCTCTCCAACCGAATGAGCACC
* * * * *
15984851 CGCACGCTTGTTTCATGGGTTGCCTTAGGCATACGGAGTTTATTCCATGTCTAA
131 CGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAA
* * *
15984905 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCA-GACTGAAGGTTGCGACAGTAGGATCGGC
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGA-TAGGACTGAAGGTTGCGACAGTAGGATCGAC
* ** * **
15984969 AGCATGCTGGGGGGATTGGGCCGAT-CCTCAGCTTGTGCATTCTGCCTCTCCGGCCGAATGAGCA
65 AGCATGATGGGGGGACCGGGCCGATCCCT-AGCTTGCGCATTCTGCCTCTCCAACCGAATGAGCA
*
15985033 CCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCC-TAGTCTAC
129 CCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCAT-GTCTAA
* * * * *
15985089 GTATATGGAGTTCATTCTCAATCTAAGATCGGATAGGCCTGAGGGTTGCG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATAGGACTGAAGGTTGCG
15985139 GCAGCACGCA
Statistics
Matches: 195, Mismatches: 35, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
183 5 0.03
184 189 0.97
185 1 0.01
ACGTcount: A:0.21, C:0.24, G:0.29, T:0.27
Consensus pattern (184 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATCGGATAGGACTGAAGGTTGCGACAGTAGGATCGACA
GCATGATGGGGGGACCGGGCCGATCCCTAGCTTGCGCATTCTGCCTCTCCAACCGAATGAGCACC
CGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAA
Found at i:15985755 original size:26 final size:26
Alignment explanation
Indices: 15985719--15985771 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15985709 GTTGACTTAG
15985719 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
15985745 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
15985771 G
1 G
15985772 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:15986896 original size:26 final size:26
Alignment explanation
Indices: 15986860--15986912 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15986850 GTTGACTTAG
15986860 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
15986886 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15986912 G
1 G
15986913 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15987370 original size:158 final size:157
Alignment explanation
Indices: 15986987--15987388 Score: 436
Period size: 158 Copynumber: 2.5 Consensus size: 157
15986977 TCGACTTGCA
* * * *
15986987 CATTCTGCCTTTCTGGCCGGC-GAGTGCCCGCACGCCCATTTCATGGGTTAGCTTAGGCATAGGG
1 CATTCTGCCTCTCTGG-CGGCTGAGTGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGG
* * * * *
15987051 AGTTCATTCCATGTCTAAGCCCCAACCGGACCGAGGGTTGGGGTAGCCGGACAGACAGCATGTAG
65 AGTTCATTCCATGTCTAAGCACCAACAGGACCGAGGGCTGCGGTAGCAGGACAGACAGCATGTAG
* *
15987116 AGGGGACCTGGGCCAATCCCCGGCTTGTG
130 AGGGGA-CTCGACCAATCCCCGGCTTGTG
* * ** * *
15987145 CATTATGCCTCTCTGGCTGGCTCAGCACCCGAACGCTCATTTCATGGGTTGACTTAGGCATACGG
1 CATTCTGCCTCTCTGGC-GGCTGAGTGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGG
* * *
15987210 AGTTCATTCCCA-GTCTAAG-ATCAGACAGGATCGAGGGCTGCGGTAGTAGGATC-GACAGCATG
65 AGTTCATT-CCATGTCTAAGCACCA-ACAGGACCGAGGGCTGCGGTAGCAGGA-CAGACAGCATG
* * ** * *
15987272 TAGGGGTGGA-TCGATCGGTCCCTGGCTTGTT
127 TAGAGG-GGACTCGACCAATCCCCGGCTTGTG
* * *
15987303 CATTCTACCTCTCTGGTCGGCTGAGTGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATATGG
1 CATTCTGCCTCTCTGG-CGGCTGAGTGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGG
15987368 AGTTCATTCCATGTCTAAGCA
65 AGTTCATTCCATGTCTAAGCA
15987389 TACGGAGTTC
Statistics
Matches: 200, Mismatches: 35, Indels: 17
0.79 0.14 0.07
Matches are distributed among these distances:
157 4 0.02
158 102 0.51
159 87 0.44
160 7 0.04
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (157 bp):
CATTCTGCCTCTCTGGCGGCTGAGTGCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGA
GTTCATTCCATGTCTAAGCACCAACAGGACCGAGGGCTGCGGTAGCAGGACAGACAGCATGTAGA
GGGGACTCGACCAATCCCCGGCTTGTG
Found at i:15987396 original size:26 final size:25
Alignment explanation
Indices: 15987360--15987411 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
15987350 GTTGGCTTAG
*
15987360 GCATATGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCA-GTCTAA
15987386 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
15987411 G
1 G
15987412 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:15987597 original size:26 final size:26
Alignment explanation
Indices: 15987568--15987618 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
15987558 GTTGACTTAG
*
15987568 GCATACGGAGTTCATCCCCAGTCTAT
1 GCATACAGAGTTCATCCCCAGTCTAT
* *
15987594 GCATATAGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATCCCCAGTCTA
15987619 AGATCAGATC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAT
Found at i:15987801 original size:26 final size:26
Alignment explanation
Indices: 15987752--15987802 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
15987742 TTTTTTTAGG
*
15987752 CATACGGAGTTCATTCCATGTCTAAC
1 CATACGGAGTTCATTCCATATCTAAC
*
15987778 CATATGGAGTTCATTCCCA-ATCTAA
1 CATACGGAGTTCATT-CCATATCTAA
15987803 GAGTTTGAGC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCATATCTAAC
Found at i:15989544 original size:26 final size:26
Alignment explanation
Indices: 15989508--15989560 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15989498 GTTGACTTAG
*
15989508 GCATATAGAGTTCATCCCCAGTCTAA
1 GCATATAGAGTTCATCCCCAATCTAA
* *
15989534 GCATATGGAGTTCATTCCCAATCTAA
1 GCATATAGAGTTCATCCCCAATCTAA
15989560 G
1 G
15989561 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATATAGAGTTCATCCCCAATCTAA
Found at i:15990561 original size:159 final size:159
Alignment explanation
Indices: 15990244--15991053 Score: 625
Period size: 159 Copynumber: 5.2 Consensus size: 159
15990234 CCCAGTCCAA
* * * * *
15990244 GCATACGGAGTTCATTCCCA-GTCTAAG-ATC-GAATCGGACCGTGGGTTATGGTC-GCAGGATC
1 GCATACGGAGTTCATT-CCATGTCTAAGCATCAG-ACCGGACCGAGGGTTGTGG-CAGCGGGACC
** * * * * * * * * *
15990305 GGTAGCATGCAGGGGGGATCGGGCTGATCCCCGGCTTACGCATTCTGCCCCTCCGACCGGCTGAG
63 GACAGCACGCAGGGGGGACCGGGCTGATCCCCGACTTGCGCATTATGCCTCTCCGATCGGTTCAG
* * * *
15990370 TGCCCGCACGCCCATTTCATGGGTTGGCTTAG
128 CGCCCGAACGCTCATTTCATGGGTTAGCTTAG
*
15990402 GCATAGGGAGTTCATTCCATGTCTAAGCCA-CAG-CCGGACCGAGGGTTGTGGCAGCGGGACCGA
1 GCATACGGAGTTCATTCCATGTCTAAG-CATCAGACCGGACCGAGGGTTGTGGCAGCGGGACCGA
* * * *
15990465 CAGCACGCAGAGGGGCACCGGGCTAATCCCACG-CTTGCGCATTATGCCTTTCCGGTCGGTTCAG
65 CAGCACGCAG-GGGGGACCGGGCTGATCCC-CGACTTGCGCATTATGCCTCTCCGATCGGTTCAG
* **
15990529 CGCCCGAATGCTCATTTCATGGGTTAATTTAG
128 CGCCCGAACGCTCATTTCATGGGTTAGCTTAG
* ** * *
15990561 GCATATGGAGTTCATTCCCA-GTCTAAG-ATTGGATCGGACTGAGGG-T-T--------G--CGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCATCAGACCGGACCGAGGGTTGTGGCAGCGGGACCGA
* * ** * * * *
15990612 CAGCACGTAGGGGGGATCGGG-TCGATCCCTAACTTACGCATTCTGCCTCTCCGATCGATTGAGC
65 CAGCACGCAGGGGGGACCGGGCT-GATCCCCGACTTGCGCATTATGCCTCTCCGATCGGTTCAGC
* *
15990676 GCCC-ACACGC-CTGTTTCATGGGTTCGCTTAG
129 GCCCGA-ACGCTC-ATTTCATGGGTTAGCTTAG
* ** ** *
15990707 GCATAAGGAGTTCATTCCATGTCTAAGCCCCAG-CCGGACTAAGGGTTGTGGCAGTGGGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAAGCATCAGACCGGACCGAGGGTTGTGGCAGCGGGACCGAC
* * * *
15990771 AGCACACAGAGGGGGACCGGGCTGATCCCTGACTTGCGCATTATGTCC-CTCCGATCGGCTCAGT
66 AGCACGCAG-GGGGGACCGGGCTGATCCCCGACTTGCGCATTATG-CCTCTCCGATCGGTTCAGC
* * *
15990835 GACCGAACGCTCATTTCGTGGGTTAACTTAG
129 GCCCGAACGCTCATTTCATGGGTTAGCTTAG
* * * ** * *
15990866 GCATACGAAGTTCATTCCCA-ATCTAAG-ATCAGATCGGACCGAGGGTTGCAGCAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGCATCAGACCGGACCGAGGGTTGTGGCAGCGGGACCGA
* * * * *
15990929 CAGCATGCAGGGGGGACCGGGCTGATCCCCGACTTGCGCATTCTACCTCTCC-AGTAGGTTGAGC
65 CAGCACGCAGGGGGGACCGGGCTGATCCCCGACTTGCGCATTATGCCTCTCCGA-TCGGTTCAGC
* * ** * *
15990993 ACCCGTACGCTTGTTTCGTGGGTTGGCTTAG
129 GCCCGAACGCTCATTTCATGGGTTAGCTTAG
15991024 GCATACGGAGTTCATTCCATGTCTAAGCAT
1 GCATACGGAGTTCATTCCATGTCTAAGCAT
15991054 ACGGAGTTCA
Statistics
Matches: 511, Mismatches: 102, Indels: 77
0.74 0.15 0.11
Matches are distributed among these distances:
145 6 0.01
146 94 0.18
147 14 0.03
148 1 0.00
149 1 0.00
156 1 0.00
157 12 0.02
158 155 0.30
159 212 0.41
160 15 0.03
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGCATCAGACCGGACCGAGGGTTGTGGCAGCGGGACCGAC
AGCACGCAGGGGGGACCGGGCTGATCCCCGACTTGCGCATTATGCCTCTCCGATCGGTTCAGCGC
CCGAACGCTCATTTCATGGGTTAGCTTAG
Found at i:15990868 original size:305 final size:314
Alignment explanation
Indices: 15990244--15991051 Score: 935
Period size: 305 Copynumber: 2.6 Consensus size: 314
15990234 CCCAGTCCAA
* * * *** *
15990244 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAATCGGACCGTGGGTTATGGTC-GCAGGATCGG
1 GCATACGAAGTTCATTCCCAATCTAAGATCAG-ATCGGACCGAGGGTTGCAG-CAGCAGGA-CGA
* * * * * *
15990307 TAGCATGCAGGGGGGATCGGGCTGATCCCCGGCTTACGCATTCTGCCCCTCCGACCGGCTGAGTG
63 CAG-AT-CAGGGGGGATCGGGCTGATCCCCGACTTACGCATTCTGCCTCTCCGATCGGTTGAGCG
** *
15990372 CCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCACAGCC
126 CCCGCACGCCTGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCACAGCC
* *
15990437 GGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGCACCGGGCTAATCCCACGCTTG
191 GGACCAAGGGTTGTGGCAGCGGGACCGACAGCACACAGAGGGGCACCGGGCTAATCCCACGCTTG
* * * * * *
15990502 CGCATTATGCCTTTCCGGTCGGTTCAGCGCCCGAATGCTCATTTCATGGGTTAATTTAG
256 CGCATTATGCCTCTCCGATCGGCTCAGCGACCGAACGCTCATTTCATGGGTTAACTTAG
* * * ** *
15990561 GCATATGGAGTTCATTCCCAGTCTAAGATTGGATCGGACTGAGGGTTGC-G-A-CA-G-C-AC-G
1 GCATACGAAGTTCATTCCCAATCTAAGATCAGATCGGACCGAGGGTTGCAGCAGCAGGACGACAG
** * *
15990619 -T-AGGGGGGATCGGG-TCGATCCCTAACTTACGCATTCTGCCTCTCCGATCGATTGAGCGCCCA
66 ATCAGGGGGGATCGGGCT-GATCCCCGACTTACGCATTCTGCCTCTCCGATCGGTTGAGCGCCCG
* *
15990681 CACGCCTGTTTCATGGGTTCGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCGGAC
130 CACGCCTGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCACAGCCGGAC
* * * * *
15990746 TAAGGGTTGTGGCAGTGGGACCGACAGCACACAGAGGGGGACCGGGCTGATCCC-TGACTTGCGC
195 CAAGGGTTGTGGCAGCGGGACCGACAGCACACAGAGGGGCACCGGGCTAATCCCACG-CTTGCGC
* *
15990810 ATTATGTCC-CTCCGATCGGCTCAGTGACCGAACGCTCATTTCGTGGGTTAACTTAG
259 ATTATG-CCTCTCCGATCGGCTCAGCGACCGAACGCTCATTTCATGGGTTAACTTAG
15990866 GCATACGAAGTTCATTCCCAATCTAAGATCAGATCGGACCGAGGGTTGCAGCAGCAGGATCGACA
1 GCATACGAAGTTCATTCCCAATCTAAGATCAGATCGGACCGAGGGTTGCAGCAGCAGGA-CGACA
* * * * *
15990931 GCATGCAGGGGGGACCGGGCTGATCCCCGACTTGCGCATTCTACCTCTCC-AGTAGGTTGAGCAC
65 G-AT-CAGGGGGGATCGGGCTGATCCCCGACTTACGCATTCTGCCTCTCCGA-TCGGTTGAGCGC
* * * *
15990995 CCGTACGCTTGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
127 CCGCACGCCTGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGC
15991052 ATACGGAGTT
Statistics
Matches: 415, Mismatches: 57, Indels: 38
0.81 0.11 0.07
Matches are distributed among these distances:
304 2 0.00
305 253 0.61
306 3 0.01
307 2 0.00
308 2 0.00
309 2 0.00
311 2 0.00
312 2 0.00
313 2 0.00
314 2 0.00
315 1 0.00
316 2 0.00
317 138 0.33
318 2 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (314 bp):
GCATACGAAGTTCATTCCCAATCTAAGATCAGATCGGACCGAGGGTTGCAGCAGCAGGACGACAG
ATCAGGGGGGATCGGGCTGATCCCCGACTTACGCATTCTGCCTCTCCGATCGGTTGAGCGCCCGC
ACGCCTGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCACAGCCGGACC
AAGGGTTGTGGCAGCGGGACCGACAGCACACAGAGGGGCACCGGGCTAATCCCACGCTTGCGCAT
TATGCCTCTCCGATCGGCTCAGCGACCGAACGCTCATTTCATGGGTTAACTTAG
Found at i:15991053 original size:26 final size:26
Alignment explanation
Indices: 15991024--15991076 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15991014 GTTGGCTTAG
15991024 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15991050 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15991076 G
1 G
15991077 ATCGGATCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15991938 original size:26 final size:26
Alignment explanation
Indices: 15991908--15991960 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15991898 GTTGGCTTAG
*
15991908 GCATATGGAGTTCATTCC-ATGTCTAA
1 GCATAGGGAGTTCATTCCTA-GTCTAA
15991934 GCATAGGGAGTTCATTCCTAGTCTAA
1 GCATAGGGAGTTCATTCCTAGTCTAA
15991960 G
1 G
15991961 ATCAGGTAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (26 bp):
GCATAGGGAGTTCATTCCTAGTCTAA
Found at i:15992472 original size:26 final size:26
Alignment explanation
Indices: 15992421--15992473 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15992411 GTTGGCTTAG
**
15992421 GCATATGGAGTTCATTCCATGTCTAA
1 GCATATGGAGTTCATTCCATACCTAA
15992447 GCATATGGAGTTCATTCCCA-ACCTAA
1 GCATATGGAGTTCATT-CCATACCTAA
15992473 G
1 G
15992474 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCATACCTAA
Found at i:15993609 original size:26 final size:26
Alignment explanation
Indices: 15993572--15993624 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15993562 GTTGACTTAG
*
15993572 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
15993598 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
15993624 G
1 G
15993625 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:15994074 original size:157 final size:157
Alignment explanation
Indices: 15993598--15994098 Score: 461
Period size: 159 Copynumber: 3.2 Consensus size: 157
15993588 CCCAGTCTAA
* * ** * * *
15993598 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAACAAGATCCACA
1 GCATACGGAGTTCATTTCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGGCAGCAAGATCGACA
* * * * * *
15993663 GCACGCAAGAGGGATCGGGTCGATCCCCGGCTTGCAAATTCTGCCTCTCCGATCGGCTGCGCGCT
66 G-ACACAAGGGGGATCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGATCGGCTGAGCGCC
* * *
15993728 C-ACACACCCGTTTTATGGGTTGGCTTAG
130 CGA-ACGCTCGTTTCATGGGTTGGCTTAG
* ** * * * * *** *
15993756 GCATAGGGAGTTCA-TTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTGTGGCAGTGGGACCGGT
1 GCATACGGAGTTCATTTCCA-GTCTAAGATCAAACCGGACCGAGGGTTGCGGCAGCAAGATC-G-
* * * * * * *
15993820 AGCATG-CA-AAAGGGGATCGGGCTGATCCTCGGCTTGCACATTATGCCTTTTCGATCGGCTTAG
63 A-CA-GACACAAGGGGGATCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGATCGGCTGAG
* * * * *
15993883 CACCAGAACGCTCATTTCATGGATTGACTTAG
126 CGCCCGAACGCTCGTTTCATGGGTTGGCTTAG
*
15993915 GCATACGGAGTTCATTTCCAGTCTAAGATCAAACCGGACCGAGGGTTACGGCAGCAAGATCGACA
1 GCATACGGAGTTCATTTCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGGCAGCAAGATCGACA
* * * * * *
15993980 GACACAGGGGGGATCGGGCCAATCCCCGACTTGCACATTCTACCTCTCCGGTTGGCTGAGCGCCC
66 GACACAAGGGGGATCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGATCGGCTGAGCGCCC
*
15994045 GTACGCTCGTTTCATGGGTTGGCTTAG
131 GAACGCTCGTTTCATGGGTTGGCTTAG
* **
15994072 GCATACTGAGTTCATTTCTTGTCTAAG
1 GCATACGGAGTTCATTTCCAGTCTAAG
15994099 CATACGGAGT
Statistics
Matches: 262, Mismatches: 72, Indels: 19
0.74 0.20 0.05
Matches are distributed among these distances:
155 1 0.00
156 4 0.02
157 97 0.37
158 41 0.16
159 108 0.41
160 8 0.03
161 2 0.01
162 1 0.00
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTTCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGGCAGCAAGATCGACA
GACACAAGGGGGATCGGGCCGATCCCCGGCTTGCACATTCTGCCTCTCCGATCGGCTGAGCGCCC
GAACGCTCGTTTCATGGGTTGGCTTAG
Found at i:15994121 original size:26 final size:26
Alignment explanation
Indices: 15994072--15994124 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15994062 GTTGGCTTAG
* * **
15994072 GCATACTGAGTTCATTTCTTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15994098 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15994124 G
1 G
15994125 ATCAGACCAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.34
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15994382 original size:26 final size:26
Alignment explanation
Indices: 15994346--15994397 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
15994336 GTTGACTTAG
15994346 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
15994372 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
15994398 CATTGAACCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:15994560 original size:26 final size:26
Alignment explanation
Indices: 15994530--15994582 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15994520 GTTGACTTAG
*
15994530 GCATAGGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
15994556 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15994582 G
1 G
15994583 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15994569 original size:184 final size:182
Alignment explanation
Indices: 15994273--15994909 Score: 743
Period size: 184 Copynumber: 3.5 Consensus size: 182
15994263 GGGATCAGAC
* * * * * * * * ** * *
15994273 CGATCCACGACTTGTGCATTCTGCCTCTCTGGTCGTCTGAGCGCCTACACGTTCATTTCGTGGGT
1 CGATCCCCGGCTTGCGCATTCTACCTCTCCGATCGGCTAAGCGCCCGCACGCTCATTTCATGGGT
* * *
15994338 TGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAACATTG
66 TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTG
* * * * *
15994403 AACCGGATCAAGGGTTGTGGTAGTAGGATTGGTAGAACGTAGGGGAGACTGGG
131 AACCGGATCGAGGGTTGCGGTAGTAGGATTGATAGAACGCAGGGG-GACCGGG
* * * * * *
15994456 TCGATCCCCGGCTTACGCATTCTACCTCTCCGGTCAGCTGAGTGCCCGCACGCTCGTTTCATGGG
1 -CGATCCCCGGCTTGCGCATTCTACCTCTCCGATCGGCTAAGCGCCCGCACGCTCATTTCATGGG
*
15994521 TTGACTTAGGCATAGGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATT
65 TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATT
* * * * *
15994586 GGATCGGACCGAGGGTTGCGGTAGTAGGATCGATAGCACGCAGGGGGGACCGGG
130 GAACCGGATCGAGGGTTGCGGTAGTAGGATTGATAGAACGCA-GGGGGACCGGG
* ** * * *
15994640 CCAGTCCATGGCTTGCGCATTCTGCCTGTCCGATCGGCTAAGCGCCTGCACGCTCATTTCATGGG
1 CGA-TCCCCGGCTTGCGCATTCTACCTCTCCGATCGGCTAAGCGCCCGCACGCTCATTTCATGGG
*
15994705 TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
65 TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATT
* * * *
15994770 AAACCGGATCGAGGGTTGCGGTAGCAGGATTGACAGTACGCAGGGGGAACCGGG
130 GAACCGGATCGAGGGTTGCGGTAGTAGGATTGATAGAACGCAGGGGG-ACCGGG
* * * * * * * *
15994824 CTGATCCCCAGCTTGTGCATTCTACCTCTCCAATCGGTTAAGCGCCCGCATGCCCGTTTCGTGGG
1 C-GATCCCCGGCTTGCGCATTCTACCTCTCCGATCGGCTAAGCGCCCGCACGCTCATTTCATGGG
* *
15994889 TTGGCTTAGGCATAGGGAGTT
65 TTGACTTAGGCATACGGAGTT
15994910 AATTCCATGC
Statistics
Matches: 383, Mismatches: 66, Indels: 8
0.84 0.14 0.02
Matches are distributed among these distances:
183 7 0.02
184 371 0.97
185 5 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (182 bp):
CGATCCCCGGCTTGCGCATTCTACCTCTCCGATCGGCTAAGCGCCCGCACGCTCATTTCATGGGT
TGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTG
AACCGGATCGAGGGTTGCGGTAGTAGGATTGATAGAACGCAGGGGGACCGGG
Found at i:15994744 original size:26 final size:26
Alignment explanation
Indices: 15994714--15994766 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15994704 GTTGACTTAG
15994714 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
15994740 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
15994766 G
1 G
15994767 ATCAAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:15995087 original size:26 final size:26
Alignment explanation
Indices: 15995057--15995109 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15995047 GTTGTCTTAG
15995057 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
15995083 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15995109 G
1 G
15995110 AGTTAGCCAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15995813 original size:26 final size:26
Alignment explanation
Indices: 15995783--15995835 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15995773 GTTGGCTTAG
*
15995783 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
15995809 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
15995835 G
1 G
15995836 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:15996285 original size:158 final size:158
Alignment explanation
Indices: 15995809--15996310 Score: 537
Period size: 158 Copynumber: 3.2 Consensus size: 158
15995799 CCCAGTCTAA
* * ** * *
15995809 GCATACAGAGTTCATTCCCA-GTCTAAGATCGAACCAGACCGAGGGTTGCGATAGTAGGTTCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGTAGGATCGAT
* * * * *
15995873 AGCACGCA-GAAGGGATCGGGCCGATCCCCGGCTTGCAAATTTTGCCTTTCTGATCGGCTGAGCG
65 AGCACGCAGGAA-GGATCGGGTCGATCCCCGACTTGCAGATTTTGCCTCTCCGATCGGCTGAGCG
* *
15995937 CTCGCACGCCCGTTTCGTGGGTTGACTTAG
129 CACGCACGCTCGTTTCGTGGGTTGACTTAG
* * ** * * * ** *
15995967 GCATAGGGAGTTCATTCCATCTCTAAGCCCTAGCCGGACCGAGGGTTGTGGCAGCGGGACCGATA
1 GCATACGGAGTTCATTCCATGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGTAGGATCGATA
* * * * *
15996032 GCACGCAGAGAAGGACCGGGTCGATCACCGACTTGC-GCATTATGCCTCTCCGA-CTGGCTCAAC
66 GCACGCAG-GAAGGATCGGGTCGATCCCCGACTTGCAG-ATTTTGCCTCTCCGATC-GGCTGAGC
* * *
15996095 GCACGAACGCTCGTTTCATGGGTTAACTTAG
128 GCACGCACGCTCGTTTCGTGGGTTGACTTAG
* * ** *
15996126 GCATATGGAGTTCATTCCCA-GTCTAAGATCGGATTGGATCGAGGGTTGCGGCAGTAGGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGTAGGATCGAT
* * *
15996190 AGCATGCAGGGAGGATCGGGTCGATCCCCGACTTACAGATTTTGCCTCTCCGATCGGCTGAGCGC
65 AGCACGCAGGAAGGATCGGGTCGATCCCCGACTTGCAGATTTTGCCTCTCCGATCGGCTGAGCGC
* * *
15996255 CCGCACGCTCGTTTTGTGGGTTGGCTTAG
130 ACGCACGCTCGTTTCGTGGGTTGACTTAG
15996284 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
15996311 CATACGAAGT
Statistics
Matches: 275, Mismatches: 60, Indels: 18
0.78 0.17 0.05
Matches are distributed among these distances:
157 6 0.02
158 143 0.52
159 120 0.44
160 6 0.02
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGTAGGATCGATA
GCACGCAGGAAGGATCGGGTCGATCCCCGACTTGCAGATTTTGCCTCTCCGATCGGCTGAGCGCA
CGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:15996334 original size:26 final size:26
Alignment explanation
Indices: 15996284--15996335 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15996274 GTTGGCTTAG
* *
15996284 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCATATCTAA
*
15996310 GCATACGAAGTTCATTCCCTATCTAA
1 GCATACGAAGTTCATTCCATATCTAA
15996336 CATCAGACCG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATATCTAA
Found at i:15996669 original size:355 final size:343
Alignment explanation
Indices: 15996218--15997033 Score: 881
Period size: 343 Copynumber: 2.3 Consensus size: 343
15996208 GGTCGATCCC
* * * *
15996218 CGACTTACAGATTTTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGGCTTA
1 CGACTTGCACATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTA
*
15996283 GGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCTA-TCTAACATCAGACCGG
66 GGCATACGAAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCC-AGTCTAACATCAGACCGG
* * * * *
15996347 ACTGAGGGTTGTGGCAGCAGGATCGACAGTAGGATCGACAGCACGCTGGGGAGACCGGGCT-GAT
130 ACCGAGGGTTATGGCAGCAGGATCG---GCA--A-C-AC-GCA---AGGAG-GACCGGG-TAGAT
** * ** *
15996411 CCCCGGTTGGCGTATTCTACCTCTCC-GACCGACTGAGCACCCGCACGCCCGTTTCATGGGTTGG
182 CCCCGACTCGCACATTCTACCTCTCCAG-CCGACTGAGCACCCGCACGCCCGTTTCATGGGTTCG
* * * *
15996475 CTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCAGACCGAGGGTTGTGGCAGTGGGAC
246 CCTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGTGGCAGCGGGAC
* * * *
15996540 TGGCATCACGTAGAGGTGGG-CCGGGCTGAT-CT
311 CGGCAGCACGTAGAGG-GGGACCAGGCCGATGCT
* ** * * ** * *
15996572 ACGGCTTGTGCATTCTGCCTTTTCGATCGGCTGAATGCTCGCACGCTCGTTTCGTGGGTTGACTT
1 -CGACTTGCACATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTT
* * * * *
15996637 AGGCATACGAAGTTCATCCCCA-ATCTAAGCATAC-AGAGTTCATTCCCAGTCTAAGATCGGATC
65 AGGCATACGAAGTTCAT-TCCATGTCTAAGCATACGA-AGTTCATTCCCAGTCTAACATCAGACC
* *
15996700 GGACCGAGGGTTATGGTAGCAGGATCGGCAACACGCAAGGAGGACCGGGTAGATCCCTGACTCGC
128 GGACCGAGGGTTATGGCAGCAGGATCGGCAACACGCAAGGAGGACCGGGTAGATCCCCGACTCGC
* * * * ** *
15996765 ACATTCTACTTTTCCAGTCGGCTGAGTGCCCGCACGCCCGTTTCCTGGGTTCGCCTAGGCATAGG
193 ACATTCTACCTCTCCAGCCGACTGAGCACCCGCACGCCCGTTTCATGGGTTCGCCTAGGCATAGG
* *** *
15996830 GAGTTCATTCCATGTCTCAGCCCCAATTGGACCGAGGGTTGTGGCAGCGGGACCGGTAGCACGTA
258 GAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGTGGCAGCGGGACCGGCAGCACGTA
*
15996895 GAGGGGGATCAGGCCGATGCT
323 GAGGGGGACCAGGCCGATGCT
* * ** *
15996916 CGACTTGCACATTCTGCCTCTCCGATCGACTGAGCACCCGCACGCTTTTTTCATGGGTTGGCTTA
1 CGACTTGCACATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTA
*
15996981 GGCATACGAAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
66 GGCATACGAAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAA
15997034 GAGTTTGAGC
Statistics
Matches: 382, Mismatches: 70, Indels: 30
0.79 0.15 0.06
Matches are distributed among these distances:
342 7 0.02
343 231 0.60
344 6 0.02
347 3 0.01
348 2 0.01
349 1 0.00
350 1 0.00
352 2 0.01
354 2 0.01
355 124 0.32
356 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.25
Consensus pattern (343 bp):
CGACTTGCACATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTA
GGCATACGAAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAACATCAGACCGGA
CCGAGGGTTATGGCAGCAGGATCGGCAACACGCAAGGAGGACCGGGTAGATCCCCGACTCGCACA
TTCTACCTCTCCAGCCGACTGAGCACCCGCACGCCCGTTTCATGGGTTCGCCTAGGCATAGGGAG
TTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGTGGCAGCGGGACCGGCAGCACGTAGAG
GGGGACCAGGCCGATGCT
Found at i:15996676 original size:26 final size:26
Alignment explanation
Indices: 15996639--15996691 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15996629 GTTGACTTAG
15996639 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
15996665 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATCCCCAATCTAA
15996691 G
1 G
15996692 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:15997012 original size:26 final size:26
Alignment explanation
Indices: 15996982--15997034 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15996972 GTTGGCTTAG
15996982 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
15997008 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15997034 G
1 G
15997035 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15997738 original size:26 final size:26
Alignment explanation
Indices: 15997708--15997760 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15997698 GTTGGCTTAG
*
15997708 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
15997734 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
15997760 G
1 G
15997761 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:15998214 original size:158 final size:157
Alignment explanation
Indices: 15997734--15998235 Score: 490
Period size: 158 Copynumber: 3.2 Consensus size: 157
15997724 CCCAGTCTAA
* * * *
15997734 GCATACAGAGTTCATTCCCA-GTCTAAGATCGAACCGGACCGAGGGTTGCGATAGTAGGTTCGAC
1 GCATACAGAGTTCATT-CCATGTCTAAGATCGAACCTGATCGAGGGTTGCGATAGCAGGATCGAC
* * * ** * * *
15997798 AGCACGCAGAGGGGACCGGACCGATCCTCGACTTATGAATTTTGCCTCTTCGATCGGCTTAGTGC
65 AGCACGCAGGGGGGACCGGGCCGATCCCCG-CTTGCGTATTATGCCTCTTCGATCGGCTAAGTGC
*
15997863 CCGCACGAC-CATTTTGTGGGTTTGCTTAG
129 CCGCACG-CTCATTTTGTGGGTTAGCTTAG
** * ** * * * ** *
15997892 GCATAGGGAGTTCATTCCATGTCTAAG-CCCCAGCTGGATCGAGGGTCGTGGCAGCGGGATCGAC
1 GCATACAGAGTTCATTCCATGTCTAAGATCGAACCT-GATCGAGGGTTGCGATAGCAGGATCGAC
* * * * * *
15997956 AGCACGTAGAGGGGGATCGAGCCGATCACCGGCTTGCGTATTATGCCTCTTCGATCGGCTCAGCG
65 AGCACGCAG-GGGGGACCGGGCCGATC-CCCGCTTGCGTATTATGCCTCTTCGATCGGCTAAGTG
* * * * *
15998021 CACGAATGCTCATTTCGTGGGTTAACTTAG
128 CCCGCACGCTCATTTTGTGGGTTAGCTTAG
* * *
15998051 GCATACAGAGTTCATTCCCA-GTCTAAGATAGGACCTGATCGAGGGTTGCGATAGCAGGATCGAT
1 GCATACAGAGTTCATT-CCATGTCTAAGATCGAACCTGATCGAGGGTTGCGATAGCAGGATCGAC
* * * * * *
15998115 AGCACACAGGGGGGACCGGGTCGATCCCCAGCTTGCGTGTTCTGTCTCTCCGATCGGCTAAGTGC
65 AGCACGCAGGGGGGACCGGGCCGATCCCC-GCTTGCGTATTATGCCTCTTCGATCGGCTAAGTGC
* *
15998180 CCGCACGCTCGTTTTGTGGGTTGGCTTAG
129 CCGCACGCTCATTTTGTGGGTTAGCTTAG
15998209 GCATACAGAGTTCATTCCATGTCTAAG
1 GCATACAGAGTTCATTCCATGTCTAAG
15998236 CATATAGAGT
Statistics
Matches: 269, Mismatches: 66, Indels: 18
0.76 0.19 0.05
Matches are distributed among these distances:
157 11 0.04
158 138 0.51
159 112 0.42
160 8 0.03
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (157 bp):
GCATACAGAGTTCATTCCATGTCTAAGATCGAACCTGATCGAGGGTTGCGATAGCAGGATCGACA
GCACGCAGGGGGGACCGGGCCGATCCCCGCTTGCGTATTATGCCTCTTCGATCGGCTAAGTGCCC
GCACGCTCATTTTGTGGGTTAGCTTAG
Found at i:15998245 original size:26 final size:26
Alignment explanation
Indices: 15998209--15998268 Score: 88
Period size: 26 Copynumber: 2.4 Consensus size: 26
15998199 GTTGGCTTAG
15998209 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
* *
15998235 GCATATAGAGTTCATTTCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
15998261 G-AT-CAGAG
1 GCATACAGAG
15998269 CAGACTGAGG
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
24 4 0.13
25 2 0.06
26 25 0.81
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:15998943 original size:26 final size:26
Alignment explanation
Indices: 15998907--15998959 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15998897 GTTGGCTTAG
15998907 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
15998933 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15998959 G
1 G
15998960 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15999657 original size:26 final size:26
Alignment explanation
Indices: 15999627--15999679 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15999617 GTTGAATTAG
* *
15999627 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCAAGTCTAA
*
15999653 GCATACGAAGTTCATTCCAAGTCTAA
1 GCATACGAAGTTCATCCCAAGTCTAA
15999679 G
1 G
15999680 ATAGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCAAGTCTAA
Found at i:16000164 original size:26 final size:26
Alignment explanation
Indices: 16000128--16000180 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16000118 GCTGGCTTAG
16000128 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCATTCTCA-GTCTAA
16000154 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
16000180 G
1 G
16000181 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAA
Found at i:16001421 original size:27 final size:26
Alignment explanation
Indices: 16001391--16001444 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16001381 GTTGACTTAG
16001391 GCATACGGAATGTCATCCCCAGTCTAA
1 GCATACGGAAT-TCATCCCCAGTCTAA
* * *
16001418 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATCCCCAGTCTAA
16001444 G
1 G
16001445 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 15 0.62
27 9 0.38
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (26 bp):
GCATACGGAATTCATCCCCAGTCTAA
Found at i:16001874 original size:158 final size:158
Alignment explanation
Indices: 16001500--16002225 Score: 607
Period size: 158 Copynumber: 4.5 Consensus size: 158
16001490 GGGGGATCGA
* * * * * *
16001500 TCTGCCTCTCCGACCGACTGATCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGT
1 TCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGT
** * * * * * * *
16001565 TCATTCCATGTCTAAGCCCCTG-TCGGTCTGAGTGTTGTGGCAG-TGGGATCGACAGCACGAAGA
66 TCATTCCATGTCTAAG-ATCAGACCAGACCGAGGGTTGTGGCAGCT-GGATCGACAGCACGCAG-
* * * * * * * *
16001628 GAGGGACTGGGCCGATCGCCGGCATGCGTAT
128 GGGGGACCGGGTCGATCCCCGACTTGTGCAT
* * ** * * ** ** *
16001659 TATGCCTCTCTGACCGATTCAGCACCCAAACGCTCGTTTCATGGGTTGATTTAGGCATACGAAGT
1 TCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGT
* * **
16001724 TCATTCC-TAGTCTAAGATCAGACCAGACCGAGCGTTGTGGTAGCTGGATCGACAGCACATAGGG
66 TCATTCCAT-GTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCTGGATCGACAGCACGCAGGG
*
16001788 GGGACCGGGTCGATCCCCGACTTATGCAT
130 GGGACCGGGTCGATCCCCGACTTGTGCAT
* *
16001817 TCTACCTCTCCGACCGGCTGAGCGCCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGT
1 TCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGT
** *
16001882 TCATTCC-TGGTCTAAGATTGGACCGGACCGAGGGTTGCGGTAGCAGGACCAGCAGTAGGATCGA
66 TCATTCCAT-GTCTAAGATCAGACCAGACCGAGGGTT---GT----GG--CAGC--T-GGATCGA
* * * * * *
16001946 CAGCACGCAGGGGGAACTGGGCCAATCCTCGACTTGCGCAT
118 CAGCACGCAGGGGGGACCGGGTCGATCCCCGACTTGTGCAT
* * * ** *
16001987 TCTGCCTCTCTGACCGGCTGAGCGCCCGTACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGT
1 TCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGT
* ** * * * *
16002052 TCATTCCATGTCTAAG-CCCCACCAGACCAAGGGTTGTGGCAGCAGGACCGGCAGCACGCAGAGG
66 TCATTCCATGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCTGGATCGACAGCACGCAG-GG
* * *
16002116 GGGACCGAGTCGATCCCTGGCTTGTGCAT
130 GGGACCGGGTCGATCCCCGACTTGTGCAT
* * * * * *
16002145 TCTGCCTCCCCGATCGGGTAAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGT
1 TCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGT
16002210 TCATTCCATGTCTAAG
66 TCATTCCATGTCTAAG
16002226 CATACAGTGT
Statistics
Matches: 453, Mismatches: 97, Indels: 35
0.77 0.17 0.06
Matches are distributed among these distances:
157 15 0.03
158 201 0.44
159 96 0.21
160 5 0.01
161 2 0.00
162 2 0.00
165 2 0.00
166 2 0.00
167 3 0.01
169 14 0.03
170 110 0.24
171 1 0.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
TCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGT
TCATTCCATGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCTGGATCGACAGCACGCAGGGG
GGACCGGGTCGATCCCCGACTTGTGCAT
Found at i:16002120 original size:328 final size:329
Alignment explanation
Indices: 16001604--16002225 Score: 770
Period size: 328 Copynumber: 1.9 Consensus size: 329
16001594 GAGTGTTGTG
* * * *
16001604 GCAGTGGGATCGACAGCACGAAGAGAGGGACTGGGCCGATCGCCGGCATGCGTATTATGCCTCTC
1 GCAGTAGGATCGACAGCACGAAGAGAGGGACTGGGCCAATCGCCGACATGCGCATTATGCCTCTC
* * *
16001669 TGACCGATTCAGCACCCAAACGCTCGTTTCATGGGTTGATTTAGGCATACGAAGTTCATTCCTAG
66 TGACCGACTCAGCACCCAAACGCCCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCTAG
* * * * * * * *
16001734 TCTAAGATCAGACCAGACCGAGCGTTGTGGTAGCTGGATCGACAGCACATAGGGGGGACCGGGTC
131 TCTAAGACCACACCAGACCAAGCGTTGTGGCAGCAGGACCGACAGCACACAGGGGGGACCGAGTC
* * *
16001799 GATCCCCGACTTATGCATTCTACCTCTCCGACCGGCTGAGCGCCCGCATGCTCGTTTCATGGGTT
196 GATCCCCGACTTATGCATTCTACCTCCCCGACCGGCTAAGCGCCCGCACGCTCGTTTCATGGGTT
16001864 GGCTTAGGCATACGGAGTTCATTCC-TGGTCTAAGATTGGACCGGACCGAGGGTTGCGGTAGCAG
261 GGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGATTGGACCGGACCGAGGGTTGCGGTAGCAG
16001928 GACCA
325 GACCA
* * *
16001933 GCAGTAGGATCGACAGCACGCAG-G-GGGAACTGGGCCAATC-CTCGACTTGCGCATTCTGCCTC
1 GCAGTAGGATCGACAGCACGAAGAGAGGG-ACTGGGCCAATCGC-CGACATGCGCATTATGCCTC
* * * ** ** * * *
16001995 TCTGACCGGCTGAGCGCCCGTACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCC-
64 TCTGACCGACTCAGCACCCAAACGCCCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCT
* * * *
16002059 ATGTCTAAG-CCCCACCAGACCAAGGGTTGTGGCAGCAGGACCGGCAGCACGCAGAGGGGGACCG
129 A-GTCTAAGACCACACCAGACCAAGCGTTGTGGCAGCAGGACCGACAGCACACAG-GGGGGACCG
* * * * * * * *
16002123 AGTCGATCCCTGGCTTGTGCATTCTGCCTCCCCGATCGGGTAAGTGCCCGCACGCTCGTTTCGTG
192 AGTCGATCCCCGACTTATGCATTCTACCTCCCCGACCGGCTAAGCGCCCGCACGCTCGTTTCATG
16002188 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
257 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
16002226 CATACAGTGT
Statistics
Matches: 245, Mismatches: 43, Indels: 11
0.82 0.14 0.04
Matches are distributed among these distances:
327 39 0.16
328 184 0.75
329 22 0.09
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.22
Consensus pattern (329 bp):
GCAGTAGGATCGACAGCACGAAGAGAGGGACTGGGCCAATCGCCGACATGCGCATTATGCCTCTC
TGACCGACTCAGCACCCAAACGCCCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCTAG
TCTAAGACCACACCAGACCAAGCGTTGTGGCAGCAGGACCGACAGCACACAGGGGGGACCGAGTC
GATCCCCGACTTATGCATTCTACCTCCCCGACCGGCTAAGCGCCCGCACGCTCGTTTCATGGGTT
GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGATTGGACCGGACCGAGGGTTGCGGTAGCAGG
ACCA
Found at i:16002237 original size:26 final size:26
Alignment explanation
Indices: 16002199--16002251 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16002189 GTTGGCTTAG
*
16002199 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
16002225 GCATACAGTGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16002251 G
1 G
16002252 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16002644 original size:26 final size:26
Alignment explanation
Indices: 16002613--16002665 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16002603 GTTGGCTTAG
16002613 GCATACGAAATTCATT-CCATGTCTAA
1 GCATACGAAATTCATTCCCA-GTCTAA
* *
16002639 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
16002665 G
1 G
16002666 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAATTCATTCCCAGTCTAA
Found at i:16002687 original size:196 final size:196
Alignment explanation
Indices: 16002346--16002766 Score: 508
Period size: 196 Copynumber: 2.1 Consensus size: 196
16002336 CACCTGTTCA
* * * * * *
16002346 ATCCCCAGCTTGCGCATCCTGCCTCTCTGGTCGGCTGAGCGTCCGTACGCTCATTTCATGGGTTG
1 ATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCAGCTGAGCGCCCGTACACTCATTTCATGGGTTG
* * * *
16002411 ACTTAGGCATACGGAGTTCAACCTTAGTCTAAGCATACAGAATTCATTCCTAGCCTAAGATCAGA
66 ACTTAGGCATACGAAATTCAACCATAGTCTAAGCATACAGAATTCATTCCCAGCCTAAGATCAGA
*** * *
16002476 CCGGATTGAGGGTTGCAGTAGCAGGACCAACAGCAGGATTGGCAGCA-TGCAGGGGGGACCAAGC
131 CCGGACCAAGGGTTGCAGTAGCACGACCAACAGCAGGATTGACAGCACT-CAGGGGGGACCAAGC
16002540 CG
195 CG
* *
16002542 ATCCCTGGCTTGCGCATTCTACCTCTCCGG-CTAGCTGAGCGCCCGTACACTCGA-TTCATGGGT
1 ATCCCCGGCTTGCGCATTCTGCCTCTCCGGTC-AGCTGAGCGCCCGTACACTC-ATTTCATGGGT
* * * * *
16002605 TGGCTTAGGCATACGAAATTCATTCCAT-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
64 TGACTTAGGCATACGAAATTCA-ACCATAGTCTAAGCATACAGAATTCATTCCCAGCCTAAGATC
* * * *
16002669 AGACCGGACCAAGGGTTGCGGTAGTACGACCAGCAGCAGGATTGACAGCACTCAGGGGGGACCAG
128 AGACCGGACCAAGGGTTGCAGTAGCACGACCAACAGCAGGATTGACAGCACTCAGGGGGGACCAA
*
16002734 GCTG
193 GCCG
** *
16002738 ATCCCCGATTTACGCATTCTGCCTCTCCG
1 ATCCCCGGCTTGCGCATTCTGCCTCTCCG
16002767 ACCGGCCTCT
Statistics
Matches: 189, Mismatches: 32, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
195 1 0.01
196 183 0.97
197 5 0.03
ACGTcount: A:0.23, C:0.28, G:0.26, T:0.23
Consensus pattern (196 bp):
ATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCAGCTGAGCGCCCGTACACTCATTTCATGGGTTG
ACTTAGGCATACGAAATTCAACCATAGTCTAAGCATACAGAATTCATTCCCAGCCTAAGATCAGA
CCGGACCAAGGGTTGCAGTAGCACGACCAACAGCAGGATTGACAGCACTCAGGGGGGACCAAGCC
G
Found at i:16002851 original size:25 final size:26
Alignment explanation
Indices: 16002822--16002873 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
16002812 GTTGACTTAG
*
16002822 GCATACGGAGTTCA-TCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
16002847 GCATACAGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16002873 G
1 G
16002874 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 12 0.50
26 12 0.50
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16003764 original size:26 final size:26
Alignment explanation
Indices: 16003728--16003779 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16003718 TTGACTTAAT
16003728 CATACGGAGTTCA-TCCCTAGTCTAAG
1 CATACGGAGTTCATTCCC-AGTCTAAG
16003754 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
16003780 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:16004202 original size:26 final size:26
Alignment explanation
Indices: 16004166--16004218 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16004156 GTTGGCTTAG
16004166 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16004192 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16004218 G
1 G
16004219 ATCAGATTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16005761 original size:26 final size:26
Alignment explanation
Indices: 16005732--16005784 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16005722 GTTGGCTTAG
*
16005732 GCATACAGAGCTCATT-CCATGTCTAA
1 GCATACAGAACTCATTCCCA-GTCTAA
*
16005758 GCATACAGAATTCATTCCCAGTCTAA
1 GCATACAGAACTCATTCCCAGTCTAA
16005784 G
1 G
16005785 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAACTCATTCCCAGTCTAA
Found at i:16007006 original size:26 final size:26
Alignment explanation
Indices: 16006955--16007007 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16006945 GTTGGCTTAG
*
16006955 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGCCTAA
*
16006981 GCATACGGAGTTCATTCC-TAGCCTAA
1 GCATACAGAGTTCATTCCAT-GCCTAA
16007007 G
1 G
16007008 AACGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGCCTAA
Found at i:16007208 original size:26 final size:26
Alignment explanation
Indices: 16007179--16007229 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16007169 CGACTTAGTT
*
16007179 ATACGGAGTTTATCCCCAGTCTAAGC
1 ATACGGAGTTCATCCCCAGTCTAAGC
*
16007205 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATCCCCAGTCTAAG
16007230 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGC
Found at i:16009732 original size:26 final size:26
Alignment explanation
Indices: 16009696--16009748 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16009686 GTTGACTTAG
*
16009696 GCATATGGAGTTCATCTCC-AGTCTAA
1 GCATATAGAGTTCAT-TCCTAGTCTAA
16009722 GCATATAGAGTTCATTCCTAGTCTAA
1 GCATATAGAGTTCATTCCTAGTCTAA
16009748 G
1 G
16009749 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATATAGAGTTCATTCCTAGTCTAA
Found at i:16010226 original size:26 final size:26
Alignment explanation
Indices: 16010197--16010249 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16010187 GTTGGCTTAG
16010197 GCATACGGAATTCATTCC-ATGTCTAA
1 GCATACGGAATTCATTCCTA-GTCTAA
*
16010223 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAATTCATTCCTAGTCTAA
16010249 G
1 G
16010250 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAATTCATTCCTAGTCTAA
Found at i:16010427 original size:26 final size:26
Alignment explanation
Indices: 16010397--16010446 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
16010387 GACTTAGGCC
*
16010397 TATGGAGTTCATCCCCAGTCTAAGCA
1 TATGGAGTTCATCCCCAATCTAAGCA
*
16010423 TATGGAGTTCATTCCCAATCTAAG
1 TATGGAGTTCATCCCCAATCTAAG
16010447 ATAGGACTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (26 bp):
TATGGAGTTCATCCCCAATCTAAGCA
Found at i:16010739 original size:159 final size:158
Alignment explanation
Indices: 16010461--16010764 Score: 391
Period size: 159 Copynumber: 1.9 Consensus size: 158
16010451 GACTGGATCG
* *
16010461 AGGGTTGCGGCAGCAGGATCGGCAGCACGCAGGGGGGATCGAGTCGATACCCGGCTTGCGCATTC
1 AGGGTTGCGGCAGCAGGACCGGCAGCACGCAGGGGGGACCGAGTCGATACCCGGCTTGCGCATTC
** ** *
16010526 TACCTCTCCGGTAGGCTGAGCACCCGTACGCCCGTTTCGTGGGTTGGCTCAGGCATAG-GGAGTT
66 TACCTCTCCGACAGGCTGAGCACCCACACGCCCGTTTCATGGGTTGGCTCAGGCAT-GCGGAGTT
16010590 CATTCCATGTCTAAGCCCCAGCCAGACTA
130 CATTCCATGTCTAAGCCCCAGCCAGACTA
* *
16010619 AGGGTTGTGGCAGC-GAGACCGGCAGCACGCAGAGGGGGACC-AGGTCGAT-CCTCGGCTTGCGT
1 AGGGTTGCGGCAGCAG-GACCGGCAGCACGCAG-GGGGGACCGA-GTCGATACC-CGGCTTGCGC
* * * * * * *
16010681 ATTTTGCCTTTCCGACCGGCTGAGCGCCCACACGCTCGTTTCATGGGTTGGCTTAGGCATGCGGA
62 ATTCTACCTCTCCGACAGGCTGAGCACCCACACGCCCGTTTCATGGGTTGGCTCAGGCATGCGGA
16010746 GTTCATTCCATGTCTAAGC
127 GTTCATTCCATGTCTAAGC
16010765 ATACGGAGTT
Statistics
Matches: 125, Mismatches: 16, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
157 1 0.01
158 32 0.26
159 92 0.74
ACGTcount: A:0.17, C:0.28, G:0.33, T:0.22
Consensus pattern (158 bp):
AGGGTTGCGGCAGCAGGACCGGCAGCACGCAGGGGGGACCGAGTCGATACCCGGCTTGCGCATTC
TACCTCTCCGACAGGCTGAGCACCCACACGCCCGTTTCATGGGTTGGCTCAGGCATGCGGAGTTC
ATTCCATGTCTAAGCCCCAGCCAGACTA
Found at i:16010771 original size:26 final size:26
Alignment explanation
Indices: 16010737--16010789 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16010727 GTTGGCTTAG
*
16010737 GCATGCGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16010763 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16010789 G
1 G
16010790 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16011508 original size:26 final size:26
Alignment explanation
Indices: 16011458--16011510 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16011448 GTTGACTTAG
* *
16011458 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCAAATCTAA
*
16011484 GCATATGGAGTTCATTCCAAATCTAA
1 GCATATGGAGTTCATCCCAAATCTAA
16011510 G
1 G
16011511 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCAAATCTAA
Found at i:16012097 original size:733 final size:722
Alignment explanation
Indices: 16010711--16012244 Score: 2278
Period size: 733 Copynumber: 2.1 Consensus size: 722
16010701 TGAGCGCCCA
* * *
16010711 CACGCTCGTTTCATGGGTTGGCTTAGGCATGCGGAGTTCAT-TCCATGTCTAAGCATACGGAGTT
1 CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACGGAGTT
16010775 CATTCCCAGTCTAAGAGTTTGAGCCATGGTGCACATGCTAGGCTCGAGCATGTGCTGGTGCCACA
65 CATTCCCAGTCTAAGAGTTTGAGCCATGGTGCACATGCTAGGCTCGAGCATGTGCTGGTGCCACA
* * * ** *
16010840 TTTTTTTTGCTCGGGGCACCATTGTTGGAGCATCGTCGGAGAGCCTAACCGACGGCGTTGGGGGT
130 TTTTTTTCGCACGGGCCACCATTGTTGGAGCATCACCGGAGAGCCTAACCGACGGCATTGGGGGT
* *
16010905 TCTGACGATTGGGGGGGCCGGGGGGTGTTCACACATGATGTACGATGGGTGCTGGTACTTGGCCG
195 TCTGACAATTGGGGGGGCCGGGGGGTGTTCACACATGATGTACGATGGGTGCTGGTACTTGCCCG
*
16010970 TATATTGGCCCCCTAACCATCATTAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
260 TATATTGGCCCCCTAACCATCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* * *
16011035 TTTATAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGAAATTTTTTTCAAACGGTCA
325 TTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGAAACTTTTTTCAAACGGTCA
* *
16011100 CAAAATCTTCTCCATTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAGGGA
390 CAAAATCTTCTCCACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGA
* *
16011165 TCACCTCTACCAATTTTGGGGACAAAAATCTTTCTAAAAAAATTTTAAAAAATCCTGAACCGCAA
455 TCACCTCTACCAAATTTGGGGACAAAAATCTTTCTAAAAAAATTTTAAAAAATCCTGAACCACAA
*
16011230 AAAGTTTCAAAAATCATGAAAAATAGAAAACGGGTCATCTTCCCACGAAACTTCACTTGAAGGCT
520 AAAGTTTCAAAAATCATGAAAAATAGAAAACGGGTCATCTTCCCACGAAACTTCACATGAAGGCT
*
16011295 TAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGACATGGCAGAAATATGAAGAT
585 TAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGACATGGCAGAAATATGAACAT
* * * * * *
16011360 GTGCTTGAAC-CCATCTACCAC-CTGTTTGATCCCGGGC-TAGCG-ATTCTGCCTCTCTGGTCGG
650 GTGCTTG-ACTCCACCTACCACTC-GTTCGATCCCCGGCAT-GCGCATCCAGCCTCTCTGGTCGA
*
16011421 CTGAGCATCTG
712 CTGAGCATCCG
* * *
16011432 CATGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATATGGAGTTC
1 CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTC
* * * * *
16011497 ATTCCAAATCTAAGAGTTTGAGCCATGGTGCACATGCTGGGCTCGGGCATGTGTTGGTGCCACAT
66 ATTCCCAGTCTAAGAGTTTGAGCCATGGTGCACATGCTAGGCTCGAGCATGTGCTGGTGCCACAT
* *
16011562 TTTTTTCGCACGGGCCACCATCGTCGGAGCATTGCCGGAGCATCACCGTAGAGCCTAACCGGCGG
131 TTTTTTCGCACGGGCCACCAT--T----G--TT---GGAGCATCACCGGAGAGCCTAACCGACGG
* * * **
16011627 CATTGGGGGTTCTGGCAATTGTGGGGGCCGGGGGGTGTTCGCACATGATGTGTGATGGGTGCTGG
185 CATTGGGGGTTCTGACAATTGGGGGGGCCGGGGGGTGTTCACACATGATGTACGATGGGTGCTGG
* * *
16011692 TACTTGACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
250 TACTTG-CCCGTATATTGGCCCCCTAACCATCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* *
16011757 GCATTTGAGATTTTATAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTT
314 GCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGAAACTTTTT
16011822 TCAAACGGTCACAAAATCTTCTCCACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
379 TCAAACGGTCACAAAATCTTCTCCACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
*
16011887 AAATACAAGGA-CAACCTCTACCAAATTTGGGGACAAAACGT-TTTCTAAAAAAATTTTAAAAAA
444 AAATACAAGGATC-ACCTCTACCAAATTTGGGGACAAAA-ATCTTTCTAAAAAAATTTTAAAAAA
* * ** * *
16011950 T-CTCGAACTACAAAAAGTTTCAAAAATCGTGAAAAATAGAAATTGGGTCGTCTTGCCACGAAAC
507 TCCT-GAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGGGTCATCTTCCCACGAAAC
*
16012014 TTCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGC
571 TTCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGACATGGC
16012079 AG-AATAATGAACATGTGCTTGACTCCACCTACCACTCGTTCGATCCCCGGCATGCGCATCCAGC
636 AGAAAT-ATGAACATGTGCTTGACTCCACCTACCACTCGTTCGATCCCCGGCATGCGCATCCAGC
16012143 CTCTCTGGTCGACTGAGCATCCG
700 CTCTCTGGTCGACTGAGCATCCG
* *
16012166 CACGCTTGTTT-AGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCGTACGGAGTT
1 CACGCTCGTTTCA-TGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTT
*
16012230 GATTCCCAGTCTAAG
65 CATTCCCAGTCTAAG
16012245 CATATGGAGT
Statistics
Matches: 727, Mismatches: 64, Indels: 31
0.88 0.08 0.04
Matches are distributed among these distances:
721 133 0.18
722 3 0.00
723 1 0.00
727 1 0.00
729 2 0.00
732 97 0.13
733 392 0.54
734 98 0.13
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (722 bp):
CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTC
ATTCCCAGTCTAAGAGTTTGAGCCATGGTGCACATGCTAGGCTCGAGCATGTGCTGGTGCCACAT
TTTTTTCGCACGGGCCACCATTGTTGGAGCATCACCGGAGAGCCTAACCGACGGCATTGGGGGTT
CTGACAATTGGGGGGGCCGGGGGGTGTTCACACATGATGTACGATGGGTGCTGGTACTTGCCCGT
ATATTGGCCCCCTAACCATCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
TTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGAAACTTTTTTCAAACGGTCAC
AAAATCTTCTCCACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGAT
CACCTCTACCAAATTTGGGGACAAAAATCTTTCTAAAAAAATTTTAAAAAATCCTGAACCACAAA
AAGTTTCAAAAATCATGAAAAATAGAAAACGGGTCATCTTCCCACGAAACTTCACATGAAGGCTT
AGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGACATGGCAGAAATATGAACATG
TGCTTGACTCCACCTACCACTCGTTCGATCCCCGGCATGCGCATCCAGCCTCTCTGGTCGACTGA
GCATCCG
Found at i:16012237 original size:26 final size:26
Alignment explanation
Indices: 16012192--16012270 Score: 113
Period size: 26 Copynumber: 3.0 Consensus size: 26
16012182 GTTGACTTAG
*
16012192 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
16012218 GCGTACGGAGTTGATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
16012244 GCATATGGAGTCCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16012270 G
1 G
16012271 ATCGGACCGG
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16012594 original size:159 final size:159
Alignment explanation
Indices: 16012426--16012734 Score: 392
Period size: 159 Copynumber: 1.9 Consensus size: 159
16012416 GCCCCAGTTG
* ** * *
16012426 GACCGAGGGTTGTGGCAGCGGGA-CTGGCAGCACGTAGAGGGGGACCGGGTCGATCCCCAACTTG
1 GACCGAGGGTTGCGGCAGCAAGATC-GACAGCACGCAGAGGGGGACCGGGTCGATCCCCAACTTG
* *
16012490 TGCATTAC-GCCTCT-TTGGTCGGCTCAGCGCCCAAACGCTCGTTTAGTGGGTTGACTTAGGCAT
65 TGCATT-CTGCCTCTCTT-GTAGGCTCAGCGCCCAAACGCTCATTTAGTGGGTTGACTTAGGCAT
16012553 ACGGAGTTCATTCC-TAGTCTAAGATTTGACCA
128 ACGGAGTTCATTCCAT-GTCTAAGATTTGACCA
* * ***
16012585 GACCGAGGGTTGCGGCAGCAAGATCGACAGCACGCCGGGGGGGACCGGGTCGATCCCTGGCTTGT
1 GACCGAGGGTTGCGGCAGCAAGATCGACAGCACGCAGAGGGGGACCGGGTCGATCCCCAACTTGT
* * ** * *
16012650 GCATTCTGCCTCTCTTGTAGGCTGAGTGCCCTTACGCTCATTTCGTGGGTTGGCTTAGGCATACG
66 GCATTCTGCCTCTCTTGTAGGCTCAGCGCCCAAACGCTCATTTAGTGGGTTGACTTAGGCATACG
16012715 GAGTTCATTCCATGTCTAAG
131 GAGTTCATTCCATGTCTAAG
16012735 CATACGAAGT
Statistics
Matches: 128, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
158 1 0.01
159 123 0.96
160 4 0.03
ACGTcount: A:0.18, C:0.26, G:0.32, T:0.25
Consensus pattern (159 bp):
GACCGAGGGTTGCGGCAGCAAGATCGACAGCACGCAGAGGGGGACCGGGTCGATCCCCAACTTGT
GCATTCTGCCTCTCTTGTAGGCTCAGCGCCCAAACGCTCATTTAGTGGGTTGACTTAGGCATACG
GAGTTCATTCCATGTCTAAGATTTGACCA
Found at i:16013810 original size:158 final size:158
Alignment explanation
Indices: 16013520--16013918 Score: 450
Period size: 158 Copynumber: 2.5 Consensus size: 158
16013510 TCCTCGGTTG
* * * * **
16013520 AGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGAATAGGGAGTTCATT-CCATGTCTAAGCCC
1 AGCGCTCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA-CGAGTTCATTCCCA-GTCTAAG-AT
* * * * * * *
16013584 CAGCCGA-ACCGAGGGTTGTGGCAGCGGGATCGACAGCATGCAAAAGGGGATCGGGCCGATCCTC
63 CGGACTAGACCGAGGGTTGTGGCAGCAGGATCGACAGCATGCAAAAGGGGACCGAGCCAATCCTC
*
16013648 GACTTGTGCATTATGCCTCT-TCGACC-AGCTC
128 GACTTGCGCATTATGCCTCTCT-GACCGA-CTC
* *
16013679 AGCGCTCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGAGTTCATTCCCAGTCTAAGATCGG
1 AGCGCTCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAGTTCATTCCCAGTCTAAGATCGG
* * * *
16013744 ACTAGACCGAGGGTTGTGGTAGTAGGATCGATAGCATGCAAAAGGGGACCGAGCTAATCC-CTGA
66 ACTAGACCGAGGGTTGTGGCAGCAGGATCGACAGCATGCAAAAGGGGACCGAGCCAATCCTC-GA
* *
16013808 CTTGCGCATTCTGCCTCTCTGACCGACTG
130 CTTGCGCATTATGCCTCTCTGACCGACTC
* * *
16013837 AGCGTTGGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCG
1 AGCGCTCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG-AGTTCATTCCCAGTCTAAGATCG
*
16013902 GA-TCGAGCCGAGGGTTG
65 GACTAGA-CCGAGGGTTG
16013919 CGACAACAGG
Statistics
Matches: 205, Mismatches: 28, Indels: 14
0.83 0.11 0.06
Matches are distributed among these distances:
157 5 0.02
158 126 0.61
159 74 0.36
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (158 bp):
AGCGCTCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAGTTCATTCCCAGTCTAAGATCGG
ACTAGACCGAGGGTTGTGGCAGCAGGATCGACAGCATGCAAAAGGGGACCGAGCCAATCCTCGAC
TTGCGCATTATGCCTCTCTGACCGACTC
Found at i:16014237 original size:26 final size:26
Alignment explanation
Indices: 16014201--16014253 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16014191 GTTGACTTAG
*
16014201 GCATATAGAGTTAATCCCCAGTCTAA
1 GCATACAGAGTTAATCCCCAGTCTAA
* * *
16014227 GCATACAGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTAATCCCCAGTCTAA
16014253 G
1 G
16014254 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTAATCCCCAGTCTAA
Found at i:16014752 original size:26 final size:26
Alignment explanation
Indices: 16014702--16014754 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16014692 GTTGGCTTAG
* *
16014702 GCATATGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
16014728 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
16014754 G
1 G
16014755 ATTGGACTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:16015403 original size:159 final size:160
Alignment explanation
Indices: 16015240--16015600 Score: 394
Period size: 159 Copynumber: 2.3 Consensus size: 160
16015230 TGGCTGTTTT
* *
16015240 GTGGGTTGGCTTAGGCATAGCGAGTTCATTCCATGTCTAAGCCCCAG-CCAGACCAAGGGTTG-T
1 GTGGGTTGGCTTAGGCATAGCGAGTTCATTCCATGTCTAAGCACCAGACCAGACCAAGGGTTGCA
* * * * *
16015303 GGCAGCGGGACCGACAGCACGTAGAGG-GGGACCGGACGGATCCCCATCTTGCGCATTATGCCTC
66 GG-AGCAGGACCGACAGCACGCA-AGGAGGGACCGGACCGATCCCCAGCTTACGCATTATGCCTC
* ** *
16015367 TTCGGTCGGCTCAGCGCCCGCACGCTCATTTC
129 TCCGACCGGCTCAGCACCCGCACGCTCATTTC
* * * *
16015399 GTGGGTTGACTTATGCATA-CAGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTG
1 GTGGGTTGGCTTAGGCATAGC-GAGTTCATT-CCATGTCTAAGCACCAGACCAGACCAAGGGTTG
* * * * * * *
16015461 CAGGAGTAGGATCGATAGCACGCAAGGAGGGACTGGGCCGATCCCCGGCTTACGCATTCTGCCTC
64 CAGGAGCAGGACCGACAGCACGCAAGGAGGGACCGGACCGATCCCCAGCTTACGCATTATGCCTC
* *
16015526 TCCGACCGGGTGAGCACCCGCACGCTCATTTC
129 TCCGACCGGCTCAGCACCCGCACGCTCATTTC
* *
16015558 ATAGGTTGGCTTAGGCATATG-GAGTTCATTCCATGTCTAAGCA
1 GTGGGTTGGCTTAGGCATA-GCGAGTTCATTCCATGTCTAAGCA
16015601 TATGGAGTTC
Statistics
Matches: 165, Mismatches: 28, Indels: 17
0.79 0.13 0.08
Matches are distributed among these distances:
158 10 0.06
159 149 0.90
160 6 0.04
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (160 bp):
GTGGGTTGGCTTAGGCATAGCGAGTTCATTCCATGTCTAAGCACCAGACCAGACCAAGGGTTGCA
GGAGCAGGACCGACAGCACGCAAGGAGGGACCGGACCGATCCCCAGCTTACGCATTATGCCTCTC
CGACCGGCTCAGCACCCGCACGCTCATTTC
Found at i:16015602 original size:26 final size:26
Alignment explanation
Indices: 16015572--16015623 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16015562 GTTGGCTTAG
16015572 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATATGGAGTTCATTCCCA-GTCTAA
16015598 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
16015624 CATTTTGAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:16016509 original size:158 final size:159
Alignment explanation
Indices: 16016219--16016797 Score: 546
Period size: 159 Copynumber: 3.6 Consensus size: 159
16016209 TACCACCCAT
* * * * * * * *
16016219 TCGATCCCCGGCTTGCGCATCCTGCCTCTCTGGTCGGCTGAACGCCCGCACGTTGGTTTCGTGGG
1 TCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCTGCACGCTCGTTTCATGGG
* * * * * * * *
16016284 TTGACTTAGGCACACGGAGTTTATTCCCA-GTCTAAG-ATCAGACCGAATCGAGGGTTGTGACAG
66 TTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCGGACCGAGGGTTGTGGCAA
16016347 CAGGATTGACAGCACGCAGAGGGGATCGGG
130 CAGGATTGACAGCACGCAGAGGGGATCGGG
* * * * *
16016377 TCGATCCCCAACTTGCACATTCTGCCTCTCCGATCGACTGAGCGCCTGCACGCCCGTTTCATGGG
1 TCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCTGCACGCTCGTTTCATGGG
* * * * * *
16016442 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGTCTGAGGGTTATGGCAAC
66 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTGTGGCAAC
* * *
16016506 AGGACTGACAGCACGTAGAGGGGAATCGAG
131 AGGATTGACAGCACGCAGAGGGG-ATCGGG
* * * * * *
16016536 -CTGGTCCCCGACTTGCGCATTATGCCTCTTCGGTCGGCTCAACG-TTCGCACGCTCGTTTCATG
1 TC-GATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCT-GCACGCTCGTTTCATG
* * * *
16016599 GGTTGACTTAGGCATACAGAGTTCATTCTCA-GTCTAAG-ATCGGACCGGACCGAGGGTTGTGG-
64 GGTTGGCTTAGGCATACGGAGTTCATTC-CATGTCTAAGCACCAGACCGGACCGAGGGTTGTGGC
* * * * *
16016661 AAGTAGGATTTATAGCATGCAGGGGGGGA-CTGGG
128 AA-CAGGATTGACAGCACGCA-GAGGGGATC-GGG
* * * ** **
16016695 TCGATCCTCGACTTACGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCACACGCTCGTTTTGTGGG
1 TCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCTGCACGCTCGTTTCATGGG
*
16016760 TTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
66 TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
16016798 TATGGAATTC
Statistics
Matches: 332, Mismatches: 75, Indels: 26
0.77 0.17 0.06
Matches are distributed among these distances:
157 3 0.01
158 124 0.37
159 196 0.59
160 9 0.03
ACGTcount: A:0.19, C:0.26, G:0.29, T:0.25
Consensus pattern (159 bp):
TCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCTGCACGCTCGTTTCATGGG
TTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGACCGGACCGAGGGTTGTGGCAAC
AGGATTGACAGCACGCAGAGGGGATCGGG
Found at i:16016808 original size:26 final size:26
Alignment explanation
Indices: 16016769--16016821 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16016759 GTTAGCTTAG
*
16016769 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAATTCATTCCCA-GTCTAA
*
16016795 GCATATGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
16016821 G
1 G
16016822 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:16017014 original size:26 final size:26
Alignment explanation
Indices: 16016977--16017029 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
16016967 GTTGGCTTAG
16016977 GCATACTGAGTTCATT-CCATGTCTAA
1 GCATACTGAGTTCATTCCCA-GTCTAA
16017003 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACTG-AGTTCATTCCCAGTCTAA
16017029 G
1 G
16017030 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 21 0.84
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACTGAGTTCATTCCCAGTCTAA
Found at i:16026051 original size:26 final size:26
Alignment explanation
Indices: 16026021--16026073 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16026011 GTTGACTTAG
16026021 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
16026047 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16026073 G
1 G
16026074 ATCAGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16026376 original size:159 final size:159
Alignment explanation
Indices: 16026047--16026549 Score: 547
Period size: 158 Copynumber: 3.2 Consensus size: 159
16026037 CCCAGTCTAA
* ** * *
16026047 GCATATGGAGTTCATTCCCA-GTCTAAGATCAGATTGGACCAAGGGTTGTGGCAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCAGACTGGACCGAGGGTTGTGGCAGCAGGATCGAC
* *
16026111 AGCACGCA-AGGGGGA-CTGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGACCAGCTGAGC
65 AGCACGCAGAGGGGGATC-GAGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGC
*
16026174 ACCCGTACGC-CTGTTTCATGGGTTGGCTTAG
129 ACCCGCACGCTCT-TTTCATGGGTTGGCTTAG
* ** **
16026205 GCATAGGGAGTTCATTCCATGTCTAAGCCCTAG-CTGGACCGAGGGTTGTGGCAGTGGGATCGGT
1 GCATACGGAGTTCATTCCATGTCTAAGCCC-AGACTGGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * * *
16026269 AGCACGCAGAGAGGGATCGAGCCGAT-CCTCGACTTGTGCATTATGCCTCTTCGACTGGCTCAGC
65 AGCACGCAGAGGGGGATCGAGCCGATCCCT-GGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGC
* *
16026333 ACCCGCACGCTCTTTTCGTGGGTTGACTTAG
129 ACCCGCACGCTCTTTTCATGGGTTGGCTTAG
* * ** ** * *
16026364 GCATACGAAGTTCATTCCCA-GTATAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCAGACTGGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * * *
16026428 AGCACACAG-GGGGGATCGAGCTGATCCCTGGCTTACGCATTCTGCCTCTCCGACCGACTGAGCG
65 AGCACGCAGAGGGGGATCGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCA
* *
16026492 CCCCCACACTCGTTTT-ATGGGTTGGCTTAG
130 CCCGCACGCTC-TTTTCATGGGTTGGCTTAG
16026522 GCATACGGAGTTCATTCCATGTCTAAGC
1 GCATACGGAGTTCATTCCATGTCTAAGC
16026550 ATACAGAGTT
Statistics
Matches: 282, Mismatches: 52, Indels: 22
0.79 0.15 0.06
Matches are distributed among these distances:
157 6 0.02
158 143 0.51
159 127 0.45
160 6 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGCCCAGACTGGACCGAGGGTTGTGGCAGCAGGATCGACA
GCACGCAGAGGGGGATCGAGCCGATCCCTGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCAC
CCGCACGCTCTTTTCATGGGTTGGCTTAG
Found at i:16026558 original size:26 final size:26
Alignment explanation
Indices: 16026522--16026574 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16026512 GTTGGCTTAG
*
16026522 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
16026548 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
16026574 G
1 G
16026575 ATCGGATCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:16032946 original size:159 final size:157
Alignment explanation
Indices: 16032659--16033085 Score: 383
Period size: 159 Copynumber: 2.7 Consensus size: 157
16032649 AGCACGTAGG
* * * * * * * ** * * *
16032659 GGGGATCGGGCCGAT-CCCAGCTTGCGTATTCTGCCTCTCCGGCTGGCAAAAAGCCCGCACACCC
1 GGGGACCGGGCCGATCCCCGGCTTGCGCATTATACCTCTCCGACCGGCTCAACGACCGCACACTC
* * ** *
16032723 GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAGGGT
66 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCGAGCCAAACCAAGGGT
** ** * *
16032788 TGTGGTAGCGGGACCGGCAGCATGCAGA
131 TACGGTAGCAAGACCGACAACATGCA-A
* * * * ** *
16032816 GGGGGACTGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTCGACCGGCTCAACGATTGCACGCT
1 -GGGGACCGGGCCGATCCCCGGCTTGCGCATTATACCTCTCCGACCGGCTCAACGACCGCACACT
* * * **
16032881 CGTTTTGTGGGTTGACTTAGGCGTACGGAGTTCATTCCCA-GTCTAAGATCG-GACCAAACCAAG
65 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCGAG-CCAAACCAAG
*
16032944 GGTTACGGTAGCAAGATCGACAACATGCAA
128 GGTTACGGTAGCAAGACCGACAACATGCAA
** * * * * * * *
16032974 GGGGACCGGGCCGATCCTTGGCTTGTGTATTCTACCTCTCCGGCCGGCTGAGCGCCCGCACACTC
1 GGGGACCGGGCCGATCCCCGGCTTGCGCATTATACCTCTCCGACCGGCTCAACGACCGCACACTC
*
16033039 ATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
66 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
16033086 ATACAGAGTT
Statistics
Matches: 210, Mismatches: 55, Indels: 9
0.77 0.20 0.03
Matches are distributed among these distances:
156 3 0.01
157 87 0.41
158 14 0.07
159 103 0.49
160 3 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (157 bp):
GGGGACCGGGCCGATCCCCGGCTTGCGCATTATACCTCTCCGACCGGCTCAACGACCGCACACTC
GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCGAGCCAAACCAAGGGT
TACGGTAGCAAGACCGACAACATGCAA
Found at i:16033059 original size:157 final size:157
Alignment explanation
Indices: 16032585--16033084 Score: 495
Period size: 157 Copynumber: 3.2 Consensus size: 157
16032575 CAAAGTCTAA
* * * *
16032585 GCATACGGAGTTCATTCC-TAGTCTAAGATAGGATCGGACTGAGGGTTGTGGCAGCAAGATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCGGACCGGACCGAGGGTTGTGGTAGCAAGATCGAC
* * * * * * * *
16032649 AGCACGTAGGGGGGATCGGGCCGATCCCAGCTTGCGTATTCTGCCTCTCCGGCTGGCAAAAAGCC
65 AGCATGCAGAGGGGACCGGGCCGATCCCGGCTTGCGTATTCTGCCTCTCCGGCCGGCTAAACGCC
*
16032714 CGCACACCCGTTTCGTGGGTTGGCTTAG
130 CGCACACTCGTTTCGTGGGTTGGCTTAG
* * ** ** * *
16032742 GCATAGGGAGTTCATTCCATGTCTAAG-CCCTAGCCGGACCGAGGGTTGTGGTAGCGGGACCGGC
1 GCATACGGAGTTCATTCCATGTCTAAGATCGGA-CCGGACCGAGGGTTGTGGTAGCAAGATCGAC
* * * * * * *
16032806 AGCATGCAGAGGGGGACTGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTCGACCGGCTCAACG
65 AGCATGCAGA-GGGGACCGGGCCGAT-CCCGGCTTGCGTATTCTGCCTCTCCGGCCGGCTAAACG
*** * * *
16032871 ATTGCACGCTCGTTTTGTGGGTTGACTTAG
128 CCCGCACACTCGTTTCGTGGGTTGGCTTAG
* ** * **
16032901 GCGTACGGAGTTCATTCCCA-GTCTAAGATCGGACCAAACCAAGGGTTACGGTAGCAAGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGGACCGGACCGAGGGTTGTGGTAGCAAGATCGAC
* * * * * *
16032965 AACATGCA-AGGGGACCGGGCCGATCCTTGGCTTGTGTATTCTACCTCTCCGGCCGGCTGAGCGC
65 AGCATGCAGAGGGGACCGGGCCGATCC-CGGCTTGCGTATTCTGCCTCTCCGGCCGGCTAAACGC
*
16033029 CCGCACACTCATTTCGTGGGTTGGCTTAG
129 CCGCACACTCGTTTCGTGGGTTGGCTTAG
16033058 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
16033085 CATACAGAGT
Statistics
Matches: 267, Mismatches: 68, Indels: 16
0.76 0.19 0.05
Matches are distributed among these distances:
156 6 0.02
157 140 0.52
158 14 0.05
159 102 0.38
160 5 0.02
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGGACCGGACCGAGGGTTGTGGTAGCAAGATCGACA
GCATGCAGAGGGGACCGGGCCGATCCCGGCTTGCGTATTCTGCCTCTCCGGCCGGCTAAACGCCC
GCACACTCGTTTCGTGGGTTGGCTTAG
Found at i:16033094 original size:26 final size:26
Alignment explanation
Indices: 16033058--16033110 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16033048 GTTGGCTTAG
*
16033058 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
16033084 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16033110 G
1 G
16033111 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16033785 original size:159 final size:160
Alignment explanation
Indices: 16033592--16033968 Score: 422
Period size: 159 Copynumber: 2.4 Consensus size: 160
16033582 CGGCTGAACG
* * * * * *
16033592 CCCGCACACCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-T
1 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGAC
* ** ** * * * * *
16033656 CGGACTGAGGGTTGTGGCAGT-GGCACCGGCAGCACGTAGAGTGGTATCGGGTCGATCCCTGGCT
66 CAGACTGAGGGTTGTGGCAGTAGG-ACCAACAGCACACAGAGGGGGATAGGGCCGATCCCTGACT
* * * *
16033720 TGTGCATTATGCCTTTTCGA-TCGGTTCAGCA
130 TGCGCATTATGCCTCTCCAACT-GGTTCAGCA
* * * *
16033751 CCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCA-GTCTAAG-ATCGGA
1 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAGA
* *
16033814 CCAGACTGAGGGTTGTGGCAGTAGGATCAACAGCACACAGGGGGGGATAGGGCCGATCCCTGACT
65 CCAGACTGAGGGTTGTGGCAGTAGGACCAACAGCACACAGAGGGGGATAGGGCCGATCCCTGACT
* *
16033879 TGCGCATTCTGCCTCTCCAACTGGTTGAGCA
130 TGCGCATTATGCCTCTCCAACTGGTTCAGCA
* *
16033910 CCCGTACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
16033969 TACGGAGTTC
Statistics
Matches: 180, Mismatches: 32, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
158 5 0.03
159 168 0.93
160 7 0.04
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.26
Consensus pattern (160 bp):
CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGAC
CAGACTGAGGGTTGTGGCAGTAGGACCAACAGCACACAGAGGGGGATAGGGCCGATCCCTGACTT
GCGCATTATGCCTCTCCAACTGGTTCAGCA
Found at i:16033969 original size:26 final size:26
Alignment explanation
Indices: 16033940--16033992 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16033930 GTTGGCTTAG
16033940 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16033966 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16033992 G
1 G
16033993 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16035179 original size:158 final size:156
Alignment explanation
Indices: 16034710--16035189 Score: 459
Period size: 159 Copynumber: 3.0 Consensus size: 156
16034700 TTCATCCCCA
* * * * * * *
16034710 TCTAAGATCAGACCGGACCGAGGGTTGTAGTAGCAGGATCGACAGCATGCAGTGGGATCGGGTCG
1 TCTAAGATTAGATCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGTAGAGGGATCGGGTCG
* * * * * * * * *
16034775 AT-CCTCGGCTTACGCATTCTGCCTCCCCGACTGGCTGAGTGCCCGCACGTCCATTTTGTGGGTT
66 ATCCCT-GGCTTGCGCATTCTGCCTCTCCGACCGGCAGAGCGCCTGCAC-TCCGTTTCGTCGGTT
** *
16034839 GGCTTAGGTGTAGGGAGTTCATTCCATG
129 GGCTTAGGCATACGGAGTTCATTCCATG
** * *
16034867 TCTAAGCCCTAG-TCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCGGG
1 TCTAAG-ATTAGATCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGTAGA--GGGATCGGG
* * * * * *
16034931 TCGATCTCC-GGCTTGTGCATTATGCCTCTTCAACCGGCTA-AGC-ACTCGCACGCTCGTTTCGT
63 TCGATC-CCTGGCTTGCGCATTCTGCCTCTCCGACCGGC-AGAGCGCCT-GCACTC-CGTTTCGT
* *
16034993 TGGTTGACTTAGGCATACGGAGTTCATTCCCA-G
124 CGGTTGGCTTAGGCATACGGAGTTCATT-CCATG
* * *
16035026 TCTAAGATTGGATCGGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGAGGATCGGGTC
1 TCTAAGATTAGATCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGTAGAG-GGATCGGGTC
* * *
16035091 GATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGACAGAGCGCCTGCACATCCGTTTCATCGGTT
65 GATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCAGAGCGCCTGCAC-TCCGTTTCGTCGGTT
* *
16035156 GGCCTAGGCATACAGAGTTCATTCCATG
129 GGCTTAGGCATACGGAGTTCATTCCATG
16035184 TCTAAG
1 TCTAAG
16035190 CATACAGAGT
Statistics
Matches: 257, Mismatches: 50, Indels: 31
0.76 0.15 0.09
Matches are distributed among these distances:
157 47 0.18
158 87 0.34
159 118 0.46
160 3 0.01
161 2 0.01
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (156 bp):
TCTAAGATTAGATCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGTAGAGGGATCGGGTCG
ATCCCTGGCTTGCGCATTCTGCCTCTCCGACCGGCAGAGCGCCTGCACTCCGTTTCGTCGGTTGG
CTTAGGCATACGGAGTTCATTCCATG
Found at i:16035193 original size:26 final size:26
Alignment explanation
Indices: 16035163--16035215 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16035153 GTTGGCCTAG
16035163 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
16035189 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16035215 G
1 G
16035216 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16036269 original size:26 final size:26
Alignment explanation
Indices: 16036239--16036291 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16036229 GTTGACTTAG
*
16036239 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
*
16036265 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
16036291 G
1 G
16036292 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGTTCATCCCCAGTCTAA
Found at i:16037315 original size:26 final size:26
Alignment explanation
Indices: 16037278--16037330 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16037268 GTTGACTTAG
*
16037278 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
16037304 GCATACGAAGTTCATTCCCGGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
16037330 G
1 G
16037331 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:16038144 original size:26 final size:26
Alignment explanation
Indices: 16038114--16038164 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
16038104 TTGACTTAGG
16038114 ATACGGAGTTCATCCCCAGTCTAAGC
1 ATACGGAGTTCATCCCCAGTCTAAGC
*
16038140 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATCCCCAGTCTAAG
16038165 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGC
Found at i:16038824 original size:26 final size:26
Alignment explanation
Indices: 16038789--16038841 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16038779 GTTGACTTAG
*
16038789 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
16038815 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
16038841 G
1 G
16038842 ATTAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:16039228 original size:689 final size:676
Alignment explanation
Indices: 16037824--16039321 Score: 1938
Period size: 689 Copynumber: 2.2 Consensus size: 676
16037814 CAAGACCAAT
* * * * * ** **
16037824 AGCAGGATCGACAGCATGCAGGGGGGACCTGGCCGAT-CCTAGCTTGCGCATTCTGCCTCTCCGG
1 AGCAAGATCGACAGCACGTAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTATGG
* * * * * * *
16037888 TCGGTTGA--G--CGCCCACACGCTCATTTCGTGCGTTGGCTTAGGCATACGGAGTTCATTCCAT
66 GCAGCTGAGCGCCCGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
* * ** * *
16037949 GTCTAAGCCCCAGTCAGACCGAGGGTTGTGGCAGTAGGATTGACAGCGAGATCGATGGCATATAG
131 GTCTAAGCCCCAGTCAGACCAAGGGTTATGGCAGTAGGACCGACAGCGAGATCGATAGCATACAG
* * * * * *
16038014 AGGGGGATCGGGCTAATCCATGGCTTGCGTATTATGCCTCTCTGACCGACCTTTTTGGCTGGCTG
196 AGGGGGATCGGGCTAATCCATGGCTTGCATATTATGCCTCTCCGACCGACCTCTTCGACCGGCTG
* *
16038079 AGTGCCCATACGATCGTTTCGTTGGTTGACTTAGGATACGGAGTTCATCCCCAGTCTAAGCATAC
261 AGCGCCCATACGATCGTTTCATTGGTTGACTTAGGATACGGAGTTCATCCCCAGTCTAAGCATAC
* * * *
16038144 GGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGATAGTAAGATCAGCAGCATGC
326 GGAGTTCATTCCCAATCTAAGATCAGATCGGACCGAGGGTTGCGATAGCAAGATCAGCAGCACGC
* * *
16038209 AGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTTCCTCTCCAATCGGAGCACCCGTTTCATGG
391 AGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTTCCTCTCCAATCGGAGCACCCATTTCATGG
* * * *
16038274 GTTGGCTTACGCATAGAGAGCTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGTGGCAGT
456 GTTGGCTTACGCATAGAGAGCTCATTCCATGTCTAACCCCCAGCCAGACCGAGGGTTGTGGCAGT
* * * * *
16038339 GGGATCGATAGCACGCAGAAGGGGACTGGGTCGATCCCCGGCTTACGTATTATGCCTCTTCGACC
521 GGGACCGACAGCACGCAGAAGGGGACTAGGTCGATCCCCGACTTACGCATTATGCCTCTTCGACC
* * * ** *
16038404 AGCTCAGTGCCTGCACGCTCGTTTCGTGGGTTGACTTATGCATACAAAGTTCATTCTTGGTCTAA
586 AGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTATGCATACAAAGTTCATTCCCGATCTAA
16038469 GATCAGATCGGACAGGGGGTTACGAC
651 GATCAGATCGGACAGGGGGTTACGAC
* *
16038495 AGCAAGATCGACAGCATGTAGGGGGGACCGGGTCGATCCCCGGCTTGTGCATTCTGCCTCTATGG
1 AGCAAGATCGACAGCACGTAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTATGG
* * *
16038560 GCAGCTGAGCGCCCGCTCGCACACTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCAT
66 GCAGCTGAGCGCCCGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
* * * * * *
16038625 GTCTAAGCTCCAGTCGGATCAAGGGTTATGGCAGTAGGACCGGCAGCGGGATTGATAGCATACAG
131 GTCTAAGCCCCAGTCAGACCAAGGGTTATGGCAGTAGGACCGACAGCGAGATCGATAGCATACAG
*
16038690 AGGGGGATCGGGCTAATCC-TCGGCTTGCATATTATGCCTCTCCGGCC-ATCCTCTTCGACCGGC
196 AGGGGGATCGGGCTAATCCAT-GGCTTGCATATTATGCCTCTCCGACCGA-CCTCTTCGACCGGC
* *
16038753 TGAGCGCCCGTACGATCGTTTCATTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
259 TGAGCGCCCATACGATCGTTTCATTGGTTGACTTAGG-ATACGGAGTTCATCCCCAGTCTAAGCA
* * *
16038818 TATGGAGTTCATTCCCAATCTAAGATTAGATCGGACCGAGGGTTGCGGTAGCAAGATCAGCAGCA
323 TACGGAGTTCATTCCCAATCTAAGATCAGATCGGACCGAGGGTTGCGATAGCAAGATCAGCAGCA
*
16038883 CGCAGGGGGGATCGGGTCGATCCCCGACTTGCGCATTCTTCCTCTCCGACCAGCTAAGCGTCCGC
388 CGCA-GGGGGATCGGGCCGATCCCCGACTTGCGCATTCTTCCTCTCC-A--A--T---CG---G-
* * * *
16038948 A-CACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAACCCCCAGCCAGAC
440 AGCACCCATTTCATGGGTTGGCTTACGCATAGAGAGCTCATTCCATGTCTAACCCCCAGCCAGAC
* * * * **
16039012 CGAGGGTTGTGGTAGTGGGACCTG-CAGTATGCAG-AGGAGGA-TCAGGTCGATCCTCGACTTGT
505 CGAGGGTTGTGGCAGTGGGACC-GACAGCACGCAGAAGG-GGACT-AGGTCGATCCCCGACTTAC
*
16039074 GCATTATGCCTCTTCGGCCAGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTATGCATACA
567 GCATTATGCCTCTTCGACCAGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTATGCATACA
*
16039139 AAGTTCATTCCCGATCTAAGATCAGATCGGACAGGGGGTTACGGC
632 AAGTTCATTCCCGATCTAAGATCAGATCGGACAGGGGGTTACGAC
* * * *
16039184 AGCAAGATCGATAGCACGTAGGGGGGATCGGGTTGATCCCCGGCTTGCGTATTCTGCCTCTATGG
1 AGCAAGATCGACAGCACGTAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTATGG
* ** *
16039249 GCGGCTGAGCGCCCGCCCGCATGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCAT
66 GCAGCTGAGCGCCCGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
16039314 GTCTAAGC
131 GTCTAAGC
16039322 ATACAGAGTT
Statistics
Matches: 710, Mismatches: 93, Indels: 30
0.85 0.11 0.04
Matches are distributed among these distances:
671 33 0.05
672 27 0.04
674 1 0.00
675 2 0.00
676 184 0.26
677 88 0.12
678 39 0.05
679 1 0.00
681 1 0.00
683 1 0.00
686 2 0.00
688 4 0.01
689 325 0.46
690 2 0.00
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (676 bp):
AGCAAGATCGACAGCACGTAGGGGGGACCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTATGG
GCAGCTGAGCGCCCGCCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT
GTCTAAGCCCCAGTCAGACCAAGGGTTATGGCAGTAGGACCGACAGCGAGATCGATAGCATACAG
AGGGGGATCGGGCTAATCCATGGCTTGCATATTATGCCTCTCCGACCGACCTCTTCGACCGGCTG
AGCGCCCATACGATCGTTTCATTGGTTGACTTAGGATACGGAGTTCATCCCCAGTCTAAGCATAC
GGAGTTCATTCCCAATCTAAGATCAGATCGGACCGAGGGTTGCGATAGCAAGATCAGCAGCACGC
AGGGGGATCGGGCCGATCCCCGACTTGCGCATTCTTCCTCTCCAATCGGAGCACCCATTTCATGG
GTTGGCTTACGCATAGAGAGCTCATTCCATGTCTAACCCCCAGCCAGACCGAGGGTTGTGGCAGT
GGGACCGACAGCACGCAGAAGGGGACTAGGTCGATCCCCGACTTACGCATTATGCCTCTTCGACC
AGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACTTATGCATACAAAGTTCATTCCCGATCTAA
GATCAGATCGGACAGGGGGTTACGAC
Found at i:16039323 original size:26 final size:26
Alignment explanation
Indices: 16039294--16039346 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16039284 GTTGGCTTAG
*
16039294 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
16039320 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16039346 G
1 G
16039347 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16040692 original size:183 final size:183
Alignment explanation
Indices: 16040366--16040714 Score: 407
Period size: 183 Copynumber: 1.9 Consensus size: 183
16040356 TATGCATAAA
* * * * * *
16040366 GAGTTTATTCCCAGTCTAAGATCGGACGGGACTGAGGGTTGCGACAGTAGGATCGATAGCATGTA
1 GAGTTCATTCCCAGTCTAAGATCAGACGGGACCGAGGGTTGCGACAGTAGGATCGACAGCACGCA
* * * *
16040431 AGGGGGACCGGGCCAATCGCCAGCTTGCACATTCTGCCTCTCCGACTGGTTAAGCGCCCGCACGC
66 AGGGGGACCGGGCCAATCGCCAGCTTACAAATTCTGCCTCTCCGACTGGCTAAGCGCCCGCACAC
** *
16040496 TTGTTTCGTGGGTTGAG-TTAGGCATAGTGAGTTCATCACAATCTAAGCATATG
131 CCGTTTCGTGGGTTG-GCTTAGGCATAGGGAGTTCATCACAATCTAAGCATATG
* * *
16040549 GAGTTCATTCCCAGTCTAATATCAGACTGGACCGAGGGTTGCGGCAGTAGGATCGACAGCACGCA
1 GAGTTCATTCCCAGTCTAAGATCAGACGGGACCGAGGGTTGCGACAGTAGGATCGACAGCACGCA
* * ** * * ** * *
16040614 TGGGGGATCGGGCTGATCTCC-GACTTACAAATTTTGCCTCTTTGA-TCGGCTGAGCGCCCGTAC
66 AGGGGGACCGGGCCAATCGCCAG-CTTACAAATTCTGCCTCTCCGACT-GGCTAAGCGCCCGCAC
*
16040677 ACCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCAT
129 ACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAT
16040715 TCCATGTCCA
Statistics
Matches: 136, Mismatches: 27, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
182 3 0.02
183 133 0.98
ACGTcount: A:0.21, C:0.23, G:0.30, T:0.26
Consensus pattern (183 bp):
GAGTTCATTCCCAGTCTAAGATCAGACGGGACCGAGGGTTGCGACAGTAGGATCGACAGCACGCA
AGGGGGACCGGGCCAATCGCCAGCTTACAAATTCTGCCTCTCCGACTGGCTAAGCGCCCGCACAC
CCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATCACAATCTAAGCATATG
Found at i:16041542 original size:343 final size:339
Alignment explanation
Indices: 16041092--16042240 Score: 1317
Period size: 343 Copynumber: 3.4 Consensus size: 339
16041082 GGATTGACAA
* * * * * * * * * *
16041092 CACGTAGAGGGGGATCAGGCTGATCCCCGACTTACCCATTATGCCTCTCTGGCCGGTTGAGCACC
1 CACGTAGAGGGGGACCGGGCCGATCTCCGACTTGCGCATTATGCCTCTCCGACTGGCTGAGCACC
* ** * *
16041157 CGCACG-TGTGTTTCGTGGGTTGACTTACACATATAGAGTTCATCCCCAGTCTAAGCATACGAAG
66 CGCACGCT-CGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAG
* *
16041221 TTCATTCCCAGTCTAAGATTGGACCGGAGTGAGGGTTACGACAGCAAGATCGGTAGCACGCAAGG
130 TTCATTCCCAGTCTAAGATCGGACCGGA-TGAGGGTTACGACAGCAAGATCGATAGCACGCAAGG
* *
16041286 GGGACCAGACCGATCCGCGACTTACGCATTCTGCCTCTCCGATCTACTAAGCGCTCGCATGCCTG
194 GGGACCAGGCCGATCCCCGACTTACGCATTCTGCCTCTCCG-TCTACTAAGCGC-CGCATGCCTG
* *
16041351 TTCCATGGGCTGGCTTAAGG-ATAGAGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGAGT
257 TT-CATGGGTTGGCTT-AGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGAGT
16041415 TGTGGCAGTGGGACCGGTAG
320 TGTGGCAGTGGGACCGGTAG
* * ** *
16041435 CACGTAGAGGGGGATCGGGCCGATC-CCTGACTTGCGCATTATGCCTCTTCGACAAGCTGAGCGC
1 CACGTAGAGGGGGACCGGGCCGATCTCC-GACTTGCGCATTATGCCTCTCCGACTGGCTGAGCAC
* * * * *
16041499 CCGCACGATCGTTTCCTAGGTTGACTTAGGCATA-AGGAGTTCATCCCCAATTTAAGCATACGGA
65 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACA-GAGTTCATCCCCAGTCTAAGCATACGGA
* * * * *
16041563 GTTCATTCCCAGTCTAAGATCAGACTGGACTGAGTGTTACGACAGCAAGATCGACAGCACGTAAG
129 GTTCATTCCCAGTCTAAGATCGGACCGGA-TGAGGGTTACGACAGCAAGATCGATAGCACGCAAG
* * * *
16041628 GGGGATCGGGCCGATCCCCAACTTACGCATTCTGCCTCTCC-TGCTGGCTGAA-CGCC-CATACG
193 GGGGACCAGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGT-CT-ACT-AAGCGCCGCAT--G
* * **
16041690 CCTGTTTCATGAGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCGCCAGTTAGACCGAG
253 CCTG-TTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAG
16041755 AGTTGTGGCAGTGGGACCGGTAG
317 AGTTGTGGCAGTGGGACCGGTAG
* * * * * *
16041778 CACGCAGAGGGGGACCGGGCCGATCTCCGGCTTGTGCATTATGCCTCTCCGGCTGGCGGAGCGCC
1 CACGTAGAGGGGGACCGGGCCGATCTCCGACTTGCGCATTATGCCTCTCCGACTGGCTGAGCACC
* * *
16041843 TGCACGCTCGTTTCGTGGGTTGACTTAAGCATACAGAGTTCATCCCCAGTCTAAGCATATGGAGT
66 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGT
* *
16041908 TCATTCCCAATCTAAGATCGGACCGGATCGAGGGTTACGACAGCAAGATCGATAGCACGCAGGGG
131 TCATTCCCAGTCTAAGATCGGACCGGAT-GAGGGTTACGACAGCAAGATCGATAGCACGCAAGGG
* * * * * * ** *
16041973 GGACCAGGTCGATCCTCGACTTGCGCATTCTGCCTCTCCGGTCGACTGAGGGCACGCACACCCGT
195 GGACCAGGCCGATCCCCGACTTACGCATTCTGCCTCTCC-GTCTACTAAGCGC-CGCATGCCTGT
* * * *
16042038 T-TTGGGAGTTGGCTTAGGCATAGGGAGTTTATTCAATGTCTAAGCCCCAGCC-GAACCGAGGGT
258 TCAT-GG-GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAG-ACCGAGAGT
* **
16042101 TGTGGTAGTGGGACCGACAG
320 TGTGGCAGTGGGACCGGTAG
* * ** * *
16042121 CACGTAGAGGGGGACCGAGCTGATCTCCGGTTTGCGCATTATGCCTCTCCGACTGGTTCAGCACC
1 CACGTAGAGGGGGACCGGGCCGATCTCCGACTTGCGCATTATGCCTCTCCGACTGGCTGAGCACC
* * * *
16042186 CGGACGCTCATTTCGTGGGTTGACTTAGGCATACAGAATTCATTCCCAGTCTAAG
66 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAG
16042241 ATTAGATCAG
Statistics
Matches: 682, Mismatches: 103, Indels: 42
0.82 0.12 0.05
Matches are distributed among these distances:
341 5 0.01
342 15 0.02
343 649 0.95
344 10 0.01
345 3 0.00
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.23
Consensus pattern (339 bp):
CACGTAGAGGGGGACCGGGCCGATCTCCGACTTGCGCATTATGCCTCTCCGACTGGCTGAGCACC
CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGT
TCATTCCCAGTCTAAGATCGGACCGGATGAGGGTTACGACAGCAAGATCGATAGCACGCAAGGGG
GACCAGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGTCTACTAAGCGCCGCATGCCTGTTCA
TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGAGTTGTGGC
AGTGGGACCGGTAG
Found at i:16041580 original size:26 final size:26
Alignment explanation
Indices: 16041528--16041580 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16041518 GTTGACTTAG
*
16041528 GCATAAGGAGTTCATCCCCAATTTAA
1 GCATAAGGAGTTCATCCCCAATCTAA
* * *
16041554 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAATCTAA
16041580 G
1 G
16041581 ATCAGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGTTCATCCCCAATCTAA
Found at i:16041907 original size:26 final size:26
Alignment explanation
Indices: 16041868--16041923 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
16041858 TGGGTTGACT
*
16041868 TAAGCATACAGAGTTCATCCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAATC
** *
16041894 TAAGCATATGGAGTTCATTCCCAATC
1 TAAGCATACAGAGTTCATCCCCAATC
16041920 TAAG
1 TAAG
16041924 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATCCCCAATC
Done.