Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19866354
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 74000 characters in sequence are not A, C, G, or T
File 72 of 100
Found at i:16042400 original size:26 final size:26
Alignment explanation
Indices: 16042371--16042423 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16042361 GTAGGCTTAG
**
16042371 GCATACGGCGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
16042397 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16042423 G
1 G
16042424 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16042619 original size:26 final size:26
Alignment explanation
Indices: 16042583--16042658 Score: 125
Period size: 26 Copynumber: 2.9 Consensus size: 26
16042573 GACTTAGGCT
16042583 TACGGAGTTCATCCCCAATCTAAGCA
1 TACGGAGTTCATCCCCAATCTAAGCA
**
16042609 TACGGAGTTCATCCCCAGCCTAAGCA
1 TACGGAGTTCATCCCCAATCTAAGCA
*
16042635 TACGGAGTTCATTCCCAATCTAAG
1 TACGGAGTTCATCCCCAATCTAAG
16042659 ATCAGATCGG
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.24
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAATCTAAGCA
Found at i:16042839 original size:26 final size:26
Alignment explanation
Indices: 16042803--16042855 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16042793 GTTGACTTAG
16042803 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16042829 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16042855 G
1 G
16042856 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16043177 original size:26 final size:26
Alignment explanation
Indices: 16043146--16043198 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16043136 GTTGGCTTAG
*
16043146 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
16043172 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
16043198 G
1 G
16043199 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:16043372 original size:26 final size:26
Alignment explanation
Indices: 16043342--16043394 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16043332 GTTGACTTAG
16043342 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
16043368 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16043394 G
1 G
16043395 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16043756 original size:26 final size:26
Alignment explanation
Indices: 16043726--16043776 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
16043716 TGACTGAGGC
*
16043726 ATACGGAGTTCATCCCCAGTCTAAGT
1 ATACGAAGTTCATCCCCAGTCTAAGT
* *
16043752 ATACGAAGTTCATTCTCAGTCTAAG
1 ATACGAAGTTCATCCCCAGTCTAAG
16043777 ATCGGACTGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACGAAGTTCATCCCCAGTCTAAGT
Found at i:16044096 original size:26 final size:26
Alignment explanation
Indices: 16044066--16044118 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16044056 GTTGGCTTAG
*
16044066 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
16044092 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16044118 G
1 G
16044119 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16045108 original size:158 final size:158
Alignment explanation
Indices: 16044809--16045144 Score: 379
Period size: 158 Copynumber: 2.1 Consensus size: 158
16044799 CATCCCTAGT
* * * * * * *
16044809 CTAAGCATACAGAGTTCATTCCTAGTCTAAGATTGGACCGGACCGAGGGTTGCGGTAGCAGGATC
1 CTAAGCATACGGAGTTCATTCCCAGTATAAGATTAGACCAGACCGAGGGTTGCGGCAACAGGATC
* * * * *
16044874 GACAGCACGCAGAAGGGATCGGACAGATCCCTGACATGTGCATTTTGCCTCTCCGACCGGCTTAG
66 GACAGCACGCAGAAGGGATCGGACAGATCCCCGACATGTGCATTCTGCCTCTCCGACCGACTGAA
* *
16044939 CACCCGAACGCTTATTTCATTGGTTGAC
131 CACCCGAACGCTCATTTCATGGGTTGAC
** *
16044967 CTAAGCATACGGAGTTCATTCCCAGTATAAGATTAGATTAGACCGAGGGTTGTGGCAACAGGATC
1 CTAAGCATACGGAGTTCATTCCCAGTATAAGATTAGACCAGACCGAGGGTTGCGGCAACAGGATC
* * * * * *
16045032 GATAGCACGCA-AGGGGGATCGGGTC-GGTCCCCGGCTTGTGCATTCTGCCTCTCCGACCGACTG
66 GACAGCACGCAGA-AGGGATC-GGACAGATCCCCGACATGTGCATTCTGCCTCTCCGACCGACTG
* * * *
16045095 AACGCCCGCACGCTCGTTTCATGGGTTGGC
129 AACACCCGAACGCTCATTTCATGGGTTGAC
* *
16045125 TTAGGCATACGGAGTTCATT
1 CTAAGCATACGGAGTTCATT
16045145 TCTTGTCTAA
Statistics
Matches: 147, Mismatches: 29, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
157 1 0.01
158 143 0.97
159 3 0.02
ACGTcount: A:0.23, C:0.26, G:0.28, T:0.24
Consensus pattern (158 bp):
CTAAGCATACGGAGTTCATTCCCAGTATAAGATTAGACCAGACCGAGGGTTGCGGCAACAGGATC
GACAGCACGCAGAAGGGATCGGACAGATCCCCGACATGTGCATTCTGCCTCTCCGACCGACTGAA
CACCCGAACGCTCATTTCATGGGTTGAC
Found at i:16045178 original size:26 final size:26
Alignment explanation
Indices: 16045129--16045181 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16045119 GTTGGCTTAG
* * **
16045129 GCATACGGAGTTCATTTCTTGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16045155 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16045181 G
1 G
16045182 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16045545 original size:159 final size:159
Alignment explanation
Indices: 16045308--16045670 Score: 331
Period size: 159 Copynumber: 2.3 Consensus size: 159
16045298 CACACGTCCG
* * * * ** *
16045308 TTTCGTGGGTTGGCTTAGGCATA-GGAAGTTCATTCCATGTCTAAGCCCTAG-TCGGA-TCGAGG
1 TTTCATGGGTTGCCTTAGGCAAACAG-AGTTCATTCCATGTCTAAGATC-AGATCGGACT-AAGG
* * ** * * * *
16045370 GTTGTGGTAGTGGGATCGACAGCACG-AAGATGGAGATCGAG-CTGATCCCCGACTTGTGCATTA
63 GTTGCGGCAGCAGGATCAACAGCACGTAAG-GGGAGATCGAGCCAG-TCCCCGACTTGCGCATTA
* * ** *
16045433 TGCCTCTTCGATCGGCTCAGCACCTGAACGCTCA
126 TGCCTCTCCGACCAACTCAGCACCCGAACGCTCA
*
16045467 TTTCATGGGTTGCCTTAGGCAAACAGAGTTCATTCCCTGTCTAAGATCAGATCGGACTAAGGGTT
1 TTTCATGGGTTGCCTTAGGCAAACAGAGTTCATTCCATGTCTAAGATCAGATCGGACTAAGGGTT
* * * * * *
16045532 GCGGCAGCAGGATCAATAGCACGTAAGGGGGGATTGGGCCAGTCCTCGACTTGCGCATTCTGCCT
66 GCGGCAGCAGGATCAACAGCACGTAAGGGGAGATCGAGCCAGTCCCCGACTTGCGCATTATGCCT
* * * *
16045597 CTCCGGCCAACTGAGCGCCCGCACGCTCA
131 CTCCGACCAACTCAGCACCCGAACGCTCA
* * * *
16045626 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 TTTCATGGGTTGCCTTAGGCAAACAGAGTTCATTCCATGTCTAAG
16045671 CATATGGAGT
Statistics
Matches: 163, Mismatches: 36, Indels: 10
0.78 0.17 0.05
Matches are distributed among these distances:
158 2 0.01
159 154 0.94
160 7 0.04
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.26
Consensus pattern (159 bp):
TTTCATGGGTTGCCTTAGGCAAACAGAGTTCATTCCATGTCTAAGATCAGATCGGACTAAGGGTT
GCGGCAGCAGGATCAACAGCACGTAAGGGGAGATCGAGCCAGTCCCCGACTTGCGCATTATGCCT
CTCCGACCAACTCAGCACCCGAACGCTCA
Found at i:16045680 original size:26 final size:26
Alignment explanation
Indices: 16045644--16045696 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16045634 GTTGGCTTAG
16045644 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
16045670 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16045696 G
1 G
16045697 ATCGGGCTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16045924 original size:196 final size:197
Alignment explanation
Indices: 16045536--16045913 Score: 542
Period size: 196 Copynumber: 1.9 Consensus size: 197
16045526 AGGGTTGCGG
* ** * * *
16045536 CAGCAGGATCAATAGCACGTAAGGGGGGATTGGGCCAGTCCTCGACTTGCGCATTCTGCCTCTCC
1 CAGCAGGATCAACAGCACGTAAGGGGGGACCGGGCCAATCCTCGACTTGCACATTCTACCTCTCC
* * * * *
16045601 GGCCAACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
66 GACCAACTGAGCGCCCGCACGCTCATTTCATGGGTTGACATAGGCATACGGAGTTCATCCCATGT
* * *
16045666 CTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGGCTGGACTGAGGGTTGCGACAGCAGGACC
131 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGAACTGAGGGTTGCGACAGCAGGACC
16045731 AA
196 AA
* * *
16045733 CAGCAGGATCGACAGCACGT-AGGGGGGACCGGGCCAATCCTCGGCTTGCACATTCTACCTCTTC
1 CAGCAGGATCAACAGCACGTAAGGGGGGACCGGGCCAATCCTCGACTTGCACATTCTACCTCTCC
* ** * *
16045797 GACCGACTGAGCGCCCGCACGCTTGTTTCATGGGTTGACATAGGCATATGGAGTTCATCCCCTGT
66 GACCAACTGAGCGCCCGCACGCTCATTTCATGGGTTGACATAGGCATACGGAGTTCATCCCATGT
*
16045862 CTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGACTGAACTGAGGGTTG
131 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGAACTGAGGGTTG
16045914 TGGTAGCAGG
Statistics
Matches: 158, Mismatches: 23, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
196 140 0.89
197 18 0.11
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (197 bp):
CAGCAGGATCAACAGCACGTAAGGGGGGACCGGGCCAATCCTCGACTTGCACATTCTACCTCTCC
GACCAACTGAGCGCCCGCACGCTCATTTCATGGGTTGACATAGGCATACGGAGTTCATCCCATGT
CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGAACTGAGGGTTGCGACAGCAGGACC
AA
Found at i:16046996 original size:26 final size:26
Alignment explanation
Indices: 16046960--16047012 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16046950 GTTGGTTTAG
16046960 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
16046986 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16047012 G
1 G
16047013 ATCAGAACAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16047189 original size:26 final size:26
Alignment explanation
Indices: 16047160--16047212 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16047150 GTTGACTTAG
16047160 GCATAC-GAAGTTCATCCCCAATCTAA
1 GCATACAG-AGTTCATCCCCAATCTAA
* *
16047186 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
16047212 G
1 G
16047213 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:16047553 original size:26 final size:26
Alignment explanation
Indices: 16047503--16047553 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
16047493 GTTGACTTAG
* *
16047503 GCATATGGAGTTCATCCCCAGTCTAT
1 GCATACGGAGTTCATCCCCAATCTAT
* *
16047529 GCATACGGAGTTCATTCCTAATCTA
1 GCATACGGAGTTCATCCCCAATCTA
16047554 AGATCGAACC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAT
Found at i:16047802 original size:343 final size:342
Alignment explanation
Indices: 16047137--16047777 Score: 707
Period size: 343 Copynumber: 1.9 Consensus size: 342
16047127 GTGCCCGCAT
16047137 GCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTAAGCATACAGAGTTCATT
1 GCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTAAGCATACAGAGTTCATT
* * * * * * * *
16047202 CCCAGTCTAAGATTGGATCGGACCGAGGGTTGCAGTAGCAGGATCGATAGCATGCAAGGGGGATT
66 CCCAATCTAAGATCGAACCGAACCGAAGGTTACAGCAGCAGGATCGATAGCA-GCAAGGGGGATT
* ** * ** **
16047267 GGGTCGATCCCCAGCTTACGCATTCTACCTCTCCAATCGGTTGAGTGCCCGCACCCCCATTTCGT
130 CGAACGATCCCCAGCTTACGCATTCTACCTCTCCAACCGACTGAGCCCCCGCACCCCCATTTCGT
* * * *
16047332 GGGTTGGGTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACGGAGGGTTATGGTA
195 GGGTTAGCTTAGGCATAGCGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTATGGTA
* * * * * * * *
16047397 GCGAGACCGACAGCACGCAGAGGAGGATCGGGCCGGTCTCCGGCTTATGCATTCTACCTCTCCGA
260 GCGAGACAGACAGCACACAGAGGAGGACCAGACCGATCTCCGACTTACGCATTCTACCTCTCCGA
16047462 CCGGTTGAGCGCCCACAC
325 CCGGTTGAGCGCCCACAC
* * * * * *
16047480 GCTCGTTTTGTGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTATGCATACGGAGTTCATT
1 GCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTAAGCATACAGAGTTCATT
* **
16047545 CCTAATCTAAGATCGAACCGAACCGAAGGTTATGGCAGCAGGATC-ATCAGCA-CACAGGAGGGA
66 CCCAATCTAAGATCGAACCGAACCGAAGGTTACAGCAGCAGGATCGAT-AGCAGCA-AGG-GGGA
* ** * * *
16047608 -TCGAACAGATCCCCAGCTTACGCATTCTGCCTCTCCGGCCGACTGAGCCCCCGTACGCCTATTT
128 TTCGAAC-GATCCCCAGCTTACGCATTCTACCTCTCCAACCGACTGAGCCCCCGCACCCCCATTT
* * *** *
16047672 CGTGGGTTAGCTTAGGCATTGCGAGTTCATTCTATGTCTAAGCCCCAGTTGGACCGAGGGTTGTG
192 CGTGGGTTAGCTTAGGCATAGCGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTATG
* * * *
16047737 GTCGTGAGACTAG-CAGCACATAGA-GAGGGACCAGATCGATC
257 GTAGCGAGAC-AGACAGCACACAGAGGA-GGACCAGACCGATC
16047778 CTCGATTTAC
Statistics
Matches: 241, Mismatches: 51, Indels: 12
0.79 0.17 0.04
Matches are distributed among these distances:
341 2 0.01
342 10 0.04
343 228 0.95
344 1 0.00
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (342 bp):
GCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTAAGCATACAGAGTTCATT
CCCAATCTAAGATCGAACCGAACCGAAGGTTACAGCAGCAGGATCGATAGCAGCAAGGGGGATTC
GAACGATCCCCAGCTTACGCATTCTACCTCTCCAACCGACTGAGCCCCCGCACCCCCATTTCGTG
GGTTAGCTTAGGCATAGCGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTTATGGTAG
CGAGACAGACAGCACACAGAGGAGGACCAGACCGATCTCCGACTTACGCATTCTACCTCTCCGAC
CGGTTGAGCGCCCACAC
Found at i:16048185 original size:26 final size:26
Alignment explanation
Indices: 16048148--16048198 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16048138 TGGTCCGATC
*
16048148 TTAGACTGGGAATGAACTTCGTATGG
1 TTAGACTGGGAATGAACTCCGTATGG
16048174 TTAGACAT-GGAATGAACTCCGTATG
1 TTAGAC-TGGGAATGAACTCCGTATG
16048199 CCTAAGCCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGG
Found at i:16049927 original size:26 final size:26
Alignment explanation
Indices: 16049883--16049935 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16049873 CTGGTCCGAT
*
16049883 CTTAGACTGGGAACGAACTTCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
*
16049909 CTTAGACTGGGGATC-AACTCCGTATG
1 CTTAGACT-GGGAACGAACTCCGTATG
16049935 C
1 C
16049936 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGTATG
Found at i:16050089 original size:26 final size:26
Alignment explanation
Indices: 16050039--16050089 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
16050029 CCGGTCTGAT
**
16050039 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16050065 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
16050090 ACCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16051489 original size:21 final size:21
Alignment explanation
Indices: 16051463--16051503 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
16051453 CTGGTGTTCA
*
16051463 GTCCCTCTCTGCGTGCTGTCG
1 GTCCCTCTCTGCATGCTGTCG
16051484 GTCCCTCTCTGCATGCTGTC
1 GTCCCTCTCTGCATGCTGTC
16051504 AGACCCACTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.02, C:0.39, G:0.24, T:0.34
Consensus pattern (21 bp):
GTCCCTCTCTGCATGCTGTCG
Found at i:16051737 original size:26 final size:26
Alignment explanation
Indices: 16051695--16051746 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16051685 TCTGGTCTGA
16051695 TCTTAGACTGGGAATGAACTCCGTAT
1 TCTTAGACTGGGAATGAACTCCGTAT
16051721 TCTTAGACTAGGG-ATGAACTCCGTAT
1 TCTTAGACT-GGGAATGAACTCCGTAT
16051747 GCCTAAGTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (26 bp):
TCTTAGACTGGGAATGAACTCCGTAT
Found at i:16052153 original size:158 final size:158
Alignment explanation
Indices: 16051862--16052353 Score: 576
Period size: 158 Copynumber: 3.1 Consensus size: 158
16051852 CTGCTGGTCC
* * * *
16051862 TGCTACCATAACCCTCGGTCCGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTACCACAACCCTCGGTCCGATCGGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * * * * *
16051927 CCCACGAAATGAGCGTGCGGGTGTTCAACCGGTCGGAGAGGTAGAATGCGCAA-ACTGGGAACCA
66 CCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCGGAGAGGCAGAATGCACAAGCCAGGG-ATCG
*
16051991 ACCCGATCCTCCCTGCGTGCTATCGATCT
130 ACCCGATCCCCCCTGCGTGCTATCGATCT
*
16052020 TGCTACCACAACCCTCGGTCCGATCGGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
1 TGCTACCACAACCCTCGGTCCGATCGGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
16052085 CCCACGAAACGAGCGTTCGGGCGCTGAGCCGGCCGGAGAGGCATAATACTCAAGCCAGGGATCGA
66 CCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCGGAGAGGCAGAATGCACAAGCCAGGGATCGA
* *
16052150 CCCGATCCCCCTCTTCGTGCTGTCGATCT
131 CCCGATCCCCC-CTGCGTGCTATCGATCT
* * ** *
16052179 CGCTGCCACAACCCTCGGTCCGA-CTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCC
1 TGCTACCACAACCCTCGGTCCGATC-GGATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCC
* * * * *
16052242 AACCCATGAAACGGGCGTGCGGGCGCTCAATCGACCAGAGAGGCAGAATGCACAAGCCAGGGATC
64 AACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCGGAGAGGCAGAATGCACAAGCCAGGGATC
* * * *
16052307 GACCCGGTCCCCCCTGTGTGCTACCGATCC
129 GACCCGATCCCCCCTGCGTGCTATCGATCT
*
16052337 TGCTACCGCAACCCTCG
1 TGCTACCACAACCCTCG
16052354 ATCTGGTTTG
Statistics
Matches: 281, Mismatches: 49, Indels: 8
0.83 0.14 0.02
Matches are distributed among these distances:
158 142 0.51
159 138 0.49
160 1 0.00
ACGTcount: A:0.23, C:0.33, G:0.26, T:0.18
Consensus pattern (158 bp):
TGCTACCACAACCCTCGGTCCGATCGGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCGGAGAGGCAGAATGCACAAGCCAGGGATCGA
CCCGATCCCCCCTGCGTGCTATCGATCT
Found at i:16054691 original size:159 final size:159
Alignment explanation
Indices: 16054300--16054725 Score: 500
Period size: 159 Copynumber: 2.7 Consensus size: 159
16054290 TTCGTATGCC
* * * * *
16054300 TAGATATGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAATGAGCGTGCGAGCGCTC-ACTG
1 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCTATGAAATGGGCGTGCGAGCGCTCAACCG
* * * *
16054364 ACCGAAGAGGCAGAATGAGCAAGCCGAGGATCGGCTCGGTCCCCATCTGCATGCTACCGGTCCCG
66 ACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCATCTGCATGCTACCAGTCCCG
* *
16054429 CTGCCACAACTCTCGATCTAGCTGGGGCT
131 CTGCCACAACCCTCGATCCAGCTGGGGCT
* * * * * *
16054458 TAGACATCGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGAGCGGGCACTTAACCG
1 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCTATGAAATGGGCGTGCGAGCGCTCAACCG
* * * * *
16054523 ACCGAAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCTC-TTTGCGTGCTGCTAGTCCC
66 ACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCC-CATCTGCATGCTACCAGTCCC
16054587 GCTGCCACAACCCTC-AGTCCAGCTGGGGCT
130 GCTGCCACAACCCTCGA-TCCAGCTGGGGCT
* * * *
16054617 TAGACATGGAGTGAACTCCCTATGCCTGAGCCAACCTATGAAATGGGTGTGCAAGCGCTCAACCA
1 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCTATGAAATGGGCGTGCGAGCGCTCAACC-
*** * * **
16054682 GTTTG-AGAGGCACAATGCGTAAGCCGGGGATCAACCCGGTCCCC
65 GACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCC
16054726 CTTGTGTTGT
Statistics
Matches: 224, Mismatches: 40, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
158 52 0.23
159 169 0.75
160 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.18
Consensus pattern (159 bp):
TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCTATGAAATGGGCGTGCGAGCGCTCAACCG
ACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCATCTGCATGCTACCAGTCCCG
CTGCCACAACCCTCGATCCAGCTGGGGCT
Found at i:16055402 original size:158 final size:158
Alignment explanation
Indices: 16054931--16055452 Score: 367
Period size: 158 Copynumber: 3.3 Consensus size: 158
16054921 CCTGTTGCCA
* * * * *
16054931 CAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG-CTGAAGCCAACCCACGA
1 CAACCTTCGGTCTGGTCTGATCTTAGACTGCGAATGAACTCCCTATGCCT-AAGCCAACCAACGA
** * * * ** * *
16054995 AACAAGCGAGT-GGGCGCTCAGCCGACCGGAGAGGTAGAATGCGCAAGTCGGGGA-CTGG-CCTA
65 AATGAGCG-TTCGGGCACTCAGCCGACCGGAGAGGCA-AATGAACAAGCCGGGGATC-GGCCCGA
* * *
16055057 GTCCCCC-CTGCATGCT-GTCGATC-C--TGCTATCG
127 -TCCCCCTCTACGTG-TACTCGATCTCGTTGC-A--G
* * * * * * * *
16055089 CAACCCTCGATCTGATCCGATCTTAGACTGGGAATGAACTCCCTATACGTAAGTCAACCAACGAA
1 CAACCTTCGGTCTGGTCTGATCTTAGACTGCGAATGAACTCCCTATGCCTAAGCCAACCAACGAA
** * * ** *
16055154 ATGAGCGTTCGGGCGTTGAGCCGACCGGAGAGGCACATGCGCAAGCCGGGGATTGGCCCGATCCC
66 ATGAGCGTTCGGGCACTCAGCCGACCGGAGAGGCAAATGAACAAGCCGGGGATCGGCCCGATCCC
* **
16055219 CCTCTCCGTGTTGTCGATCTCGTTGCCA-
131 CCTCTACGTGTACTCGATCTCGTTG-CAG
* *
16055247 CAATCCTT-GGTCTGG-CTGGTGCTTAGACAT-CGAATGAACTCCCTATGCCTAAGCCAACCCAC
1 CAA-CCTTCGGTCTGGTCTGAT-CTTAGAC-TGCGAATGAACTCCCTATGCCTAAGCCAACCAAC
* * * *
16055309 GAAATGGGC-TTGCGGGCACTCAGCCGATCGGAGAGGCAGAATGAATAAGCCGGGGATCGGCTCG
63 GAAATGAGCGTT-CGGGCACTCAGCCGACCGGAGAGGCA-AATGAACAAGCCGGGGATCGGCCCG
*
16055373 GTCCCCC-CTACGTGCTACT-GATC-CTGTTGCAG
126 ATCCCCCTCTACGTG-TACTCGATCTC-GTTGCAG
* * *
16055405 TAACCTTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
1 CAACCTTCGGTCTGGTCTGATCTTAGACTGCGAATGAACTCCCTATGC
16055453 TTAGACTGAG
Statistics
Matches: 293, Mismatches: 50, Indels: 42
0.76 0.13 0.11
Matches are distributed among these distances:
157 38 0.13
158 214 0.73
159 37 0.13
161 3 0.01
162 1 0.00
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (158 bp):
CAACCTTCGGTCTGGTCTGATCTTAGACTGCGAATGAACTCCCTATGCCTAAGCCAACCAACGAA
ATGAGCGTTCGGGCACTCAGCCGACCGGAGAGGCAAATGAACAAGCCGGGGATCGGCCCGATCCC
CCTCTACGTGTACTCGATCTCGTTGCAG
Found at i:16055467 original size:26 final size:26
Alignment explanation
Indices: 16055426--16055479 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
16055416 CTGGTCTGAT
16055426 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16055452 CTTAGACTGAGG-ATGAACTCTGTATG
1 CTTAGACTG-GGAATGAACTCCGTATG
16055478 CT
1 CT
16055480 GAAGTGAACC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16055649 original size:26 final size:26
Alignment explanation
Indices: 16055611--16055663 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16055601 CTGGTCTGAT
16055611 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16055637 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16055663 C
1 C
16055664 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16056140 original size:26 final size:26
Alignment explanation
Indices: 16056111--16056163 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16056101 CTGATCCGAT
16056111 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* * *
16056137 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
16056163 C
1 C
16056164 CTAAGTGAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:16056890 original size:26 final size:26
Alignment explanation
Indices: 16056861--16056913 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16056851 CTGGTCCGAT
16056861 CTTAGAC-TGGGAATAAACTCCGTATG
1 CTTAGACAT-GGAATAAACTCCGTATG
*
16056887 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATAAACTCCGTATG
16056913 C
1 C
16056914 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCCGTATG
Found at i:16058131 original size:26 final size:26
Alignment explanation
Indices: 16058093--16058145 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16058083 GGCTCAAACT
16058093 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
16058119 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
16058145 C
1 C
16058146 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:16058426 original size:158 final size:158
Alignment explanation
Indices: 16058118--16058405 Score: 346
Period size: 158 Copynumber: 1.8 Consensus size: 158
16058108 AACTCTGTAT
* ** ** *
16058118 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACAAGCGTGTGGGTGCTCAG
1 GCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAAGCGTGCAGGCGCTCAG
* * * * ** *
16058183 CTAACTGAAGAGGCAGAATGCACAAGCCGGGGATCAACCTGACCCCTTTTACGTGCTTTCGATCC
66 CTAACCGAAAAGGCAGAATGCACAAGCCGAGGATCAACCCGACCCCTCCTACGTGCTGTCGATCC
16058248 CACTGCCACAACCCTCGGTCCAGCTGGG
131 CACTGCCACAACCCTCGGTCCAGCTGGG
* *
16058276 GCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCTTGCAGGCGCTCAG
1 GCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAAGCGTGCAGGCGCTCAG
* * ** * **
16058341 -TCGACCGAAAAGGTAGAATGCGTAAGCTGAGGATCGGCCCGATCCCC-CCTACGTGCTGTCGAT
66 CT-AACCGAAAAGGCAGAATGCACAAGCCGAGGATCAACCCGA-CCCCTCCTACGTGCTGTCGAT
16058404 CC
129 CC
16058406 TGCTGCCGTA
Statistics
Matches: 106, Mismatches: 22, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
157 1 0.01
158 101 0.95
159 4 0.04
ACGTcount: A:0.26, C:0.30, G:0.25, T:0.19
Consensus pattern (158 bp):
GCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAAGCGTGCAGGCGCTCAG
CTAACCGAAAAGGCAGAATGCACAAGCCGAGGATCAACCCGACCCCTCCTACGTGCTGTCGATCC
CACTGCCACAACCCTCGGTCCAGCTGGG
Found at i:16058464 original size:26 final size:26
Alignment explanation
Indices: 16058435--16058487 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16058425 CCGGTCCAAT
16058435 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
16058461 CTTAGACTGGGGATGAACTCGGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16058487 C
1 C
16058488 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16058678 original size:26 final size:26
Alignment explanation
Indices: 16058649--16058701 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16058639 CCGGTCCGAT
16058649 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
16058675 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
16058701 C
1 C
16058702 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:16059193 original size:26 final size:26
Alignment explanation
Indices: 16059151--16059206 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
16059141 CTAGGATGAT
16059151 CTTAGACTGGGAGTGAACTCCATATG
1 CTTAGACTGGGAGTGAACTCCATATG
16059177 CTTAGACTAGGGA-TGAACTCCATATG
1 CTTAGACT-GGGAGTGAACTCCATATG
16059203 CTTA
1 CTTA
16059207 AGTCAACCCA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 25 0.86
27 4 0.14
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAGTGAACTCCATATG
Found at i:16059399 original size:26 final size:26
Alignment explanation
Indices: 16059361--16059413 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16059351 TCGATTTGAT
16059361 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16059387 CTTAGACAT-GGAATGAACTCGGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16059413 C
1 C
16059414 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16059724 original size:712 final size:710
Alignment explanation
Indices: 16058191--16059964 Score: 1872
Period size: 712 Copynumber: 2.5 Consensus size: 710
16058181 AGCTAACTGA
* * ** * * * * * *
16058191 AGAGGCAGAATGCACAAGCCGGGGATCAACCTGA-CCCCTTTTACGTGCTTTCGATCCCACTGCC
1 AGAGGCAGAATGCACAAACCAGGGATCGGCCAGATCCCCCTCTCCGTGC-TTCGGTCCCACTACC
* *
16058255 ACAACCCTCGGTCCAGCTGGGGCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCATGA
65 ACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGA
* * * * * *
16058320 AACAGGCTTGCA-GGCGCTCAGTC-GACCGAAAAGGTAGAATGCGTAAGCTGAGGATCGGCCCGA
130 AACGGGCATG-AGGGCGCTCAGCCAG-CCGAGAAGGTAGAATGCGTAAGCCGAGGATCGACCCGA
* * * * *
16058383 TCCCCCCTACGTGCTGTCGATCCTGCTGCCGTAACCCTTGGTCCGGTCCAATCTTAGACTGGGAA
193 T-CCCCCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCTGGT-CGATCTTAGACTGGGAA
* *
16058448 TGAACTCCGTATGCTTAGACTGGGGATGAACTCGGTATGCCTAAGTCAACCCATGAAACGAGTGT
256 TGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGT
* * ** * * * *** * ** **
16058513 GCGGGTGCTCAGTCGATTGAAGAGGCTGGCCAGAGAGGCAGAATGTGCAAGCTGGGGATCGGCTT
321 GCGGGCGCTCAGCCGACCGGAGAGGCCGACCAGAGAGGCAGAATGCAAAAGCTAGGGAAAGGCCC
* * * * * *
16058578 GATCCCCCCTGCGTGCTGCCGATCCTGCTGCTGGTTCTACTGTCGTAACCCTCGATTCAGTCCGG
386 CATCCCCCCTGCGTGCTACCGATCCTACTGCTGGTCCTACTGACGCAACCCTCGATTCAGT-C--
16058643 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTTCGTATGCCTAAGC
448 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTTCGTATGCCTAAGC
* * * * * * *
16058708 CAACCCACGAAATGAATGTGCGGGCACTCAGCCGATCGAAGAGGCAGAATGCGTAAGCTGGGGAT
513 CAACCAACGAAACGAACGTGCGGGCACTCAACCGACCGAAGAGGCAGAATGCGCAAGCCGGGGAT
* * * ** * *
16058773 CGACCTGATCCTCGCCTGCGTACTGTCGATCTTACTATCGTAACCCTCGATCTGGTTCGATCTTA
578 CGACCTGATCCCCGCCTGCGTACTATCGATCCTACTATCACAACCCTCGATCCGATTCGATCTTA
* * * * * * *
16058838 GACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGGAATGAGCTTTTGAGCGCTGAACCGGT
643 GACTGAGAATGAACTCTGTATACCTAAGTCAACCCACGGAATGAGCATTTGAGCACTGAACCAGC
*
16058903 TAG
708 CAG
* * ** * * * ** * *
16058906 AGAGGTAGAATGCGCAAGTCGGGGATTGGCCCGATCCTTCTCTCCAT-CTTACGGGTCCCGCTAC
1 AGAGGCAGAATGCACAAACCAGGGATCGGCCAGATCCCCCTCTCCGTGCTT-C-GGTCCCACTAC
* * ** *
16058970 CACAACACTCGGTCCGACTAAGGCTTAAACATGGAATGAACTCCCTATGCCTAAGCCAACCCATG
64 CACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATG
* * * * * * *
16059035 AAATGGGCGTGAGGGCGCTCAGCCAGCCGAGGAGGTAAAATGCGTAAGCCGATGATCAACCTGAT
129 AAACGGGCATGAGGGCGCTCAGCCAGCCGAGAAGGTAGAATGCGTAAGCCGAGGATCGACCCGAT
* *
16059100 CCCTCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCTAGGAT-GATCTTAGACTGGGAG
194 CCC-CCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCT-GG-TCGATCTTAGACTGGGAA
* * * *
16059164 TGAACTCCATATGCTTAGACTAGGGATGAACTCCATATGCTTAAGTCAACCCATGAAACGAGCGT
256 TGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGT
* *
16059229 GCGGGCGCTCAGCCAACCGGAGAGGCCGACCAGAGAGGTAGAATGCAAAAGCTAGGGAAAGGCCC
321 GCGGGCGCTCAGCCGACCGGAGAGGCCGACCAGAGAGGCAGAATGCAAAAGCTAGGGAAAGGCCC
* * *
16059294 CATCCCCCCCTGCGTGCTATCGATCCTACTGCTGGTCCTGCTGACGCAACCCTCGGTTC-GAT-T
386 CAT-CCCCCCTGCGTGCTACCGATCCTACTGCTGGTCCTACTGACGCAACCCTCGATTCAG-TCT
*
16059357 -TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAAC-TCGGTATGCCTAAGC
449 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTTC-GTATGCCTAAGC
* ** * * *
16059420 CAACCAACGAAACGAGCGTGCGGGCGTTCAACC-AGCCGGATAGGTAGAATGCGCAAGCCGGGGA
513 CAACCAACGAAACGAACGTGCGGGCACTCAACCGA-CCGAAGAGGCAGAATGCGCAAGCCGGGGA
* * * * *
16059484 -CTGACCCT-ATCCCCTCCTTCGTGCTATCGATCCTGCTATCACAACCCTCGGTCCGA-TCTGAT
577 TC-GA-CCTGATCCCCGCCTGCGTACTATCGATCCTACTATCACAACCCTCGATCCGATTC-GAT
* * *
16059546 CTTAGACTGAGAATGAACTCTGTATACCTAAGTTAACCCACGGAATGAGCATTTGGGCACTGAGC
639 CTTAGACTGAGAATGAACTCTGTATACCTAAGTCAACCCACGGAATGAGCATTTGAGCACTGAAC
*
16059611 CAGCCGG
704 CAGCCAG
* * *
16059618 AGAGGCATG-ATGCATAAACCAGGGATCGGCTCAG-TCCCCCTCTGCGTGCTGTCGGTCCTACTA
1 AGAGGCA-GAATGCACAAACCAGGGATCGGC-CAGATCCCCCTCTCCGTGCT-TCGGTCCCACTA
* * *
16059681 CCACAACCCTCGGTCCGGTTGGGGCTTAGATATGGAATGAACTCCCTACG-CTGAAGCCAACCCA
63 CCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCT-AAGCCAACCCA
* * * * * * * * * * * *
16059745 CGAAACGGGCACGCGAGAGTTGAGCCAGCC-AGAAAGGCAGAATGCGCAAGTCGGGGATCGGCCC
127 TGAAACGGGCATGAGGGCGCTCAGCCAGCCGAG-AAGGTAGAATGCGTAAGCCGAGGATCGACCC
* * ** *
16059809 GGTTCCCCCTGCGTGCTATCGATCCTGCTGTTGCAACCCTCGGTCTGGTTCGATCTTAGATTGGG
191 -GATCCCCCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCTGG-TCGATCTTAGACTGGG
** *
16059874 AATGAACTTTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
254 AATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGC
* *
16059939 GTGCGGACGCTCAGCCGACCAGAGAG
319 GTGCGGGCGCTCAGCCGACCGGAGAG
16059965 ACAGGATGCG
Statistics
Matches: 865, Mismatches: 171, Indels: 49
0.80 0.16 0.05
Matches are distributed among these distances:
711 13 0.02
712 470 0.54
713 15 0.02
714 3 0.00
715 33 0.04
716 279 0.32
717 51 0.06
718 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (710 bp):
AGAGGCAGAATGCACAAACCAGGGATCGGCCAGATCCCCCTCTCCGTGCTTCGGTCCCACTACCA
CAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAA
ACGGGCATGAGGGCGCTCAGCCAGCCGAGAAGGTAGAATGCGTAAGCCGAGGATCGACCCGATCC
CCCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCTGGTCGATCTTAGACTGGGAATGAAC
TCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGG
CGCTCAGCCGACCGGAGAGGCCGACCAGAGAGGCAGAATGCAAAAGCTAGGGAAAGGCCCCATCC
CCCCTGCGTGCTACCGATCCTACTGCTGGTCCTACTGACGCAACCCTCGATTCAGTCTCCGATCT
TAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCAAC
GAAACGAACGTGCGGGCACTCAACCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCTGA
TCCCCGCCTGCGTACTATCGATCCTACTATCACAACCCTCGATCCGATTCGATCTTAGACTGAGA
ATGAACTCTGTATACCTAAGTCAACCCACGGAATGAGCATTTGAGCACTGAACCAGCCAG
Found at i:16059913 original size:26 final size:26
Alignment explanation
Indices: 16059863--16059915 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16059853 CTGGTTCGAT
* **
16059863 CTTAGATTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16059889 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16059915 C
1 C
16059916 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16060932 original size:26 final size:26
Alignment explanation
Indices: 16060903--16060955 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16060893 CCGGTCCGAT
*
16060903 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
16060929 CTTATACTGGGGATGAATTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
16060955 C
1 C
16060956 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16062807 original size:26 final size:26
Alignment explanation
Indices: 16062769--16062821 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16062759 CCGGTCTGAT
*
16062769 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16062795 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16062821 C
1 C
16062822 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16063140 original size:159 final size:158
Alignment explanation
Indices: 16062794--16063187 Score: 418
Period size: 159 Copynumber: 2.5 Consensus size: 158
16062784 AACTTCGTAT
* * *
16062794 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCCTGC-GGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAACGTGCGGGCGCTCAG
* * * * * *
16062858 TCGGACAGAGAGGCAAAATGTGCAAGTCAGGGATCGGCCCGGTCCCCTCTGCATACTGTCGATCC
66 CCGGCCAGAGAGGCAAAATGCGCAAGTCAGGGATCAGCCCGATCCCCTCTGCATACTGCCGATCC
* ** * *
16062923 TGCTGCTGCAACCCTCGGTCTGGTCTGA
131 CGCTGCCACAACCCTCGGTCTCGACTGA
** * * *
16062951 TATTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAACGTTCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAACGTGCGGGCGCTCA
* * * * * *
16063015 GCCGGCCGGAGAGGCATAATGCGCAAG-CAGGGGATCAGCCCGATCCACCTTTGCGTGCTGCCGG
65 GCCGGCCAGAGAGGCAAAATGCGCAAGTCA-GGGATCAGCCCGATCC-CCTCTGCATACTGCCGA
*
16063079 TCCCGCTGCCACAACCCTCGGTC-CGACTGGG
128 TCCCGCTGCCACAACCCTCGGTCTCGACT-GA
* ** ** **
16063110 GCTTAGACATGGAATGAACACTTTATGCCTAAGCCAACCCACAAAATGGCCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAACGTGCGGGCGCTCAG
*
16063175 CCAGCCAGAGAGG
66 CCGGCCAGAGAGG
16063188 TAGAATACGT
Statistics
Matches: 191, Mismatches: 40, Indels: 10
0.79 0.17 0.04
Matches are distributed among these distances:
156 1 0.01
157 48 0.25
158 46 0.24
159 95 0.50
160 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAACGTGCGGGCGCTCAG
CCGGCCAGAGAGGCAAAATGCGCAAGTCAGGGATCAGCCCGATCCCCTCTGCATACTGCCGATCC
CGCTGCCACAACCCTCGGTCTCGACTGA
Found at i:16063221 original size:159 final size:158
Alignment explanation
Indices: 16062974--16063259 Score: 340
Period size: 159 Copynumber: 1.8 Consensus size: 158
16062964 ATGAACTCCG
* ** * * * * * *
16062974 TATGCCTAAGTCAACCCATGAAATGAACGTTCGGGCGCTGAGCCGGCCGGAGAGGCATAATGCGC
1 TATGCCTAAGCCAACCCACAAAATGAACGTGCGGGCGCTCAGCCAGCCAGAGAGGCAGAATACGC
* * * * *
16063039 AAGCAGGGGATCAGCCCGATCCACCTTTGCGTGCTGCCGGTCCCGCTGCCACAACCCTCGGTCCG
66 AAGCAGAGGATCAACCCGATCCACC-ATGCGTGCTGCCGATCCCACTGCCACAACCCTCGGTCCG
16063104 ACTGGGGCTTAGACATGGAATGAACACTT
130 ACTGGGGCTTAGACATGGAATGAACACTT
** * *
16063133 TATGCCTAAGCCAACCCACAAAATGGCCGTGCGGGCGCTCAGCCAGCCAGAGAGGTAGAATACGT
1 TATGCCTAAGCCAACCCACAAAATGAACGTGCGGGCGCTCAGCCAGCCAGAGAGGCAGAATACGC
* * * * *
16063198 AAGCTA-AGGATCAACCCGGTCCACCATGCGTGCTGTCGATCCTACTGCTACAACCTTCGGTC
66 AAGC-AGAGGATCAACCCGATCCACCATGCGTGCTGCCGATCCCACTGCCACAACCCTCGGTC
16063260 TGATTCAATC
Statistics
Matches: 103, Mismatches: 23, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
158 30 0.29
159 72 0.70
160 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (158 bp):
TATGCCTAAGCCAACCCACAAAATGAACGTGCGGGCGCTCAGCCAGCCAGAGAGGCAGAATACGC
AAGCAGAGGATCAACCCGATCCACCATGCGTGCTGCCGATCCCACTGCCACAACCCTCGGTCCGA
CTGGGGCTTAGACATGGAATGAACACTT
Found at i:16063242 original size:696 final size:696
Alignment explanation
Indices: 16061905--16063334 Score: 1771
Period size: 696 Copynumber: 2.1 Consensus size: 696
16061895 TTTTTATTCC
* * * ** * * *
16061905 TAGACTGGGGATAAACTCTGTATGCCTAAGTCAACCTATGAAACGAGCGTGCGGGCGCTCAGCCT
1 TAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCGTGCGGACGCTCAGCCG
* *
16061970 ATCGGAGAGGCAAAATGCGCAAACCGAGGATCATCTCAGTCCCCCTTACGTGCTACCGATCCTGC
66 ATCGGAGAGGCAAAATGCGCAAACCGAGGATCATCCCAGTCCCCCCTACGTGCTACCGATCCTGC
* * * * *
16062035 TGCTGGTCCTGCTGCCGCAACCCTCGGTCTAGTCTGATCATAAACTGAGAATGAACTCCGTATGC
131 TGCTGGTCCTACTACCACAACCCTCAGTCCAGTCTGATCATAAACTGAGAATGAACTCCGTATGC
* * *
16062100 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGCGTTCAGTCA
196 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCCTGCGGCGCTCAGTCA
* * * *
16062165 GAGAAAGAGGTAGAATGCGCAAGTCAGGGATCAGCCCGGTCCCCCCTACGCACTGTCGATCCTAC
261 GACAAAGAGGCAAAATGCGCAAGTCAGGGATCAGCCCGGTCCCCCCTACACACTGTCGATCCTAC
* * * *
16062230 TGTCGCAACCCTTGATCTAGTCTGATCTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCC
326 TGTCGCAACCCTCGATCTAGTCTGATATTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * ** * *
16062295 ATGAAATCAGCGTCCGGGCGCTGAGCCGATCGGAGAGGCAGAATGCGCAAGTTGGGGATCGGCCT
391 ATGAAATCAACGTCCGGGCGCTGAGCCGACCGGAGAGGCAGAATGCGCAAGCAGGGGATCGCCCG
* * *
16062360 AGTCCCCCTTTGCATTCTGTAGGTCCCACTGCCACAACCCTCGGTCCGACGGGGGCTTAGACATG
456 AGTCCACCTTTGCATGCTGCAGGTCCCACTGCCACAACCCTCGGTCCGACGGGGGCTTAGACATG
* * * **
16062425 GAATGAACTCCCTAAGCCTAAGCCAACCCACGAAACTGGCATGTGGGCGCTCAACAGACTGGAGA
521 GAATGAACACCCTAAGCCTAAGCCAACCCACGAAAATGGCATGCGGGCGCTCAACAGACCAGAGA
* * * * * *
16062490 GGAAACATGCGCAAGTCAGGGATCGACCCGACCCCCCCTGCGTGCTACCTATCCTACTGCCACAA
586 GGAAACATACGCAAGTCAAGGATCAACCCGACCCACCATGCGTGCTACCGATCCTACTGCCACAA
* *
16062555 CCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCT
651 CCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCATATGCT
* * *
16062601 TAGACTGGGGATGAACTCCGTTTGCCTAAGTCAACCCACAAAACAAGCGTGCGGATGCTCAGTCG
1 TAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCGTGCGGACGCTCAGCCG
* * * * * **
16062666 GTCGGAGAGGCAGAATGTGCAAGCTG-GGAATCGA-CCCAGTCCCCCCTACGTGCTGTCGATCCT
66 ATCGGAGAGGCAAAATGCGCAAACCGAGG-ATC-ATCCCAGTCCCCCCTACGTGCTACCGATCCT
* * * * * * * *
16062729 GCTGCTGGTCCTACTACCATAACCTTTAGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTAT
129 GCTGCTGGTCCTACTACCACAACCCTCAGTCCAGTCTGATCATAAACTGAGAATGAACTCCGTAT
*
16062794 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCCTGCGGCGCTCAGT
194 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCCTGCGGCGCTCAGT
* * * * * * *
16062859 CGGACAGAGAGGCAAAATGTGCAAGTCAGGGATCGGCCCGGTCCCCTCTGCATACTGTCGATCCT
259 CAGACAAAGAGGCAAAATGCGCAAGTCAGGGATCAGCCCGGTCCCCCCTACACACTGTCGATCCT
* * *
16062924 GCTG-CTGCAACCCTCGGTCTGGTCTGATATTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
324 ACTGTC-GCAACCCTCGATCTAGTCTGATATTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * *
16062988 CCCATGAAATGAACGTTCGGGCGCTGAGCCGGCCGGAGAGGCATAATGCGCAAGCAGGGGATCAG
388 CCCATGAAATCAACGTCCGGGCGCTGAGCCGACCGGAGAGGCAGAATGCGCAAGCAGGGGATC-G
* * * *
16063053 CCCGA-TCCACCTTTGCGTGCTGCCGGTCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGA
452 CCCGAGTCCACCTTTGCATGCTGCAGGTCCCACTGCCACAACCCTCGGTCCGACGGGGGCTTAGA
** * * *
16063117 CATGGAATGAACACTTTATGCCTAAGCCAACCCAC-AAAATGGCCGTGCGGGCGCTCAGCCAG-C
517 CATGGAATGAACACCCTAAGCCTAAGCCAACCCACGAAAATGG-CATGCGGGCGCTCA-ACAGAC
* * ** **
16063180 CAGAGAGGTAGA-ATACGTAAG-CTAAGGATCAACCCGGTCCACCATGCGTGCTGTCGATCCTAC
580 CAGAGAGG-AAACATACGCAAGTC-AAGGATCAACCCGACCCACCATGCGTGCTACCGATCCTAC
* * * * * *
16063243 TGCTACAACCTTCGGTCTGATTCAATCTTAGACTGGGGATGAACTCCGTATGCT
643 TGCCACAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCATATGCT
* * *
16063297 TAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCA
1 TAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCA
16063335 TGAAACGAGC
Statistics
Matches: 619, Mismatches: 106, Indels: 18
0.83 0.14 0.02
Matches are distributed among these distances:
695 10 0.02
696 598 0.97
697 11 0.02
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.21
Consensus pattern (696 bp):
TAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCGTGCGGACGCTCAGCCG
ATCGGAGAGGCAAAATGCGCAAACCGAGGATCATCCCAGTCCCCCCTACGTGCTACCGATCCTGC
TGCTGGTCCTACTACCACAACCCTCAGTCCAGTCTGATCATAAACTGAGAATGAACTCCGTATGC
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCCTGCGGCGCTCAGTCA
GACAAAGAGGCAAAATGCGCAAGTCAGGGATCAGCCCGGTCCCCCCTACACACTGTCGATCCTAC
TGTCGCAACCCTCGATCTAGTCTGATATTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
ATGAAATCAACGTCCGGGCGCTGAGCCGACCGGAGAGGCAGAATGCGCAAGCAGGGGATCGCCCG
AGTCCACCTTTGCATGCTGCAGGTCCCACTGCCACAACCCTCGGTCCGACGGGGGCTTAGACATG
GAATGAACACCCTAAGCCTAAGCCAACCCACGAAAATGGCATGCGGGCGCTCAACAGACCAGAGA
GGAAACATACGCAAGTCAAGGATCAACCCGACCCACCATGCGTGCTACCGATCCTACTGCCACAA
CCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCATATGCT
Found at i:16063449 original size:11 final size:11
Alignment explanation
Indices: 16063433--16063460 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
16063423 CTTACTGTCG
16063433 CAACCCTCGGT
1 CAACCCTCGGT
16063444 CAACCCTCGGT
1 CAACCCTCGGT
16063455 CAACCC
1 CAACCC
16063461 CCACTTCGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.21, C:0.50, G:0.14, T:0.14
Consensus pattern (11 bp):
CAACCCTCGGT
Found at i:16063794 original size:26 final size:26
Alignment explanation
Indices: 16063765--16063817 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16063755 CCGGTTCGAT
16063765 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
*
16063791 CTTAGATTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
16063817 C
1 C
16063818 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:16064003 original size:26 final size:26
Alignment explanation
Indices: 16063965--16064017 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16063955 CCGGTCTGAT
*
16063965 CTTAGACTGGGAATAAACTTCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
16063991 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATAAACTCCGTATG
16064017 C
1 C
16064018 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:16064944 original size:26 final size:26
Alignment explanation
Indices: 16064915--16064967 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16064905 CCGATCTGAT
* *
16064915 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
*
16064941 CTTAGAATGGGGATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
16064967 C
1 C
16064968 CTAAGTCAGC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:16065350 original size:26 final size:26
Alignment explanation
Indices: 16065310--16065360 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
16065300 TGATCCAATC
16065310 TTAGACTGGGAATGAACTCCGTATGT
1 TTAGACTGGGAATGAACTCCGTATGT
*
16065336 TTAGACTGGGGATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
16065361 CCTAAGTCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGT
Found at i:16065732 original size:26 final size:26
Alignment explanation
Indices: 16065703--16065753 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16065693 GATCTGATCT
16065703 TAGACTGGGAATGAACTCGATATGCA
1 TAGACTGGGAATGAACTCGATATGCA
* *
16065729 TAGACTGGGGATGAACTCTATATGC
1 TAGACTGGGAATGAACTCGATATGC
16065754 CTAAGTCAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCGATATGCA
Found at i:16065938 original size:26 final size:26
Alignment explanation
Indices: 16065909--16065958 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
16065899 CCGATCCAAT
16065909 CTTAGAC-TGGGAATGAACTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
16065935 CTTAGACATGGAATGAACTCCATA
1 CTTAGACATGGAATGAACTCCATA
16065959 CGCCTAAGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:16066162 original size:393 final size:392
Alignment explanation
Indices: 16064907--16066197 Score: 1305
Period size: 392 Copynumber: 3.3 Consensus size: 392
16064897 CTCTCAGTCC
* ** *
16064907 GATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGAATGGGGATGAACTCCGTATGCCTAA
1 GATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAA
* * * * * * * * * * *
16064972 GTCAGCCCACGGAACGAG-ATTACAGGTGCTCAGC-CGACTGGAGAGG-CC-AGCCGAAGAGGCA
66 GTCAGCCCATGAAACAAGCA-TGCGGGCGCTCAGCTGGTC-GGAGAGGTCCGA-CTGGAGAGGTA
** * * ** * * * *
16065033 GAATGCCAAGCTGAGGATAGGCTTGATCCCCCTCCTACGTCCTGTCGA-CCCTGCTGCTGGTCCT
128 GAATGCCAAGCCAAGGATCGACCCGAT--CCCTCATACGTGCTGTCCATTCCTGCTGCTGGTCCT
* * *
16065097 GCTGCCGTAACCCTAGGTTCGATCTGATCTTCGACTGGGAATGAACTCCATATGCTTAGACATGG
191 GCTGCCGTAACCCTCGG-TCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGG
* * * * * *
16065162 AATGAACTCCGTATGCCTAAGGCAACCCACGAAATGAGCGTGCGGGCACTCAATCGGTCGGATAG
255 AATGAACTCCGTACGCCTAAGCCAACCCATGAAATGAGCATG-AGGCACTCAATCGGTCGGAGAG
* * * * *
16065227 GTAAAATGCATAAGCCGGGGACCGGTTCGATCCCCC-CTGCATGCTGTCGATCTTGCTATCGCAA
319 GCAGAATGCATAAGCCGGGGACCGGCTCGATCCCCCACTGCGTGCTGTCGATCTTGCTCT-GCAA
*
16065291 CCCTCGATCT
383 CCCTCGATCA
* * *
16065301 GATCCAATCTTAGACTGGGAATGAACTCCGTATGTTTAGACTGGGGATGAACTCCGTATGCCTAA
1 GATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAA
** * * * *
16065366 GTCAGCCCACAAAACGAGCGTGCGGGCGCTCA-ATCGATCGGAGAGG-CCGACTGGAGAGGTAGA
66 GTCAGCCCATGAAACAAGCATGCGGGCGCTCAGCT-GGTCGGAGAGGTCCGACTGGAGAGGTAGA
* * * * ** *
16065429 ATGCCAAGCTAAGGATCGGCCCGATCCCTCATGCGTGTTGTCGGTT-CTGCTACTGGTCCTGCTG
130 ATGCCAAGCCAAGGATCGACCCGATCCCTCATACGTGCTGTCCATTCCTGCTGCTGGTCCTGCTG
* * *
16065493 CCGTAACCCTCGATCTAGTCCGATCTTAGACTGGGAATGAACT-CATATGCTTAGACATAGAATG
195 CCGTAACCCTCGGTCGA-TCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATG
* * ** *
16065557 AACTCCGTACGCCTAAGCCAACCCATGAAACGAGCATGCAGGCTCTCAATCAATCAGAGAGGCAG
259 AACTCCGTACGCCTAAGCCAACCCATGAAATGAGCATG-AGGCACTCAATCGGTCGGAGAGGCAG
* * * * * * * *
16065622 AATGTAAAAGTCGGGGATCGGCTTGGTCCCCCACTGCGTGCGGTGGATCTTGCTACTGCAACCCT
323 AATGCATAAGCCGGGGACCGGCTCGATCCCCCACTGCGTGCTGTCGATCTTGCT-CTGCAACCCT
* *
16065687 TGATCC
387 CGATCA
* * * **
16065693 GATCTGATCTTAGACTGGGAATGAACTCGATATGCATAGACTGGGGATGAACTCTATATGCCTAA
1 GATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAA
* * * * *
16065758 GTCAGCCCATGAAACTAGCATGCGGGCACTCAGCTGGCCGGAGAGGTCGGTC-GGAGAGGTAGAA
66 GTCAGCCCATGAAACAAGCATGCGGGCGCTCAGCTGGTCGGAGAGGTCCGACTGGAGAGGTAGAA
* * * *
16065822 TGCCAAGCCAAGGATCGATCCGATCCCCTC-TACGTGCTG-CCATTCCTGCTGGTAGTCCTGCTA
131 TGCCAAGCCAAGGATCGACCCGAT-CCCTCATACGTGCTGTCCATTCCTGCTGCTGGTCCTGCTG
* *
16065885 CCGTAATCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATG
195 CCGTAACCCTCGGT-CGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATG
* * * * * ** *
16065950 AACTCCATACGCCTAAGCCAACCAATGAAATTAGCATGTGGACGCTCAGCCGGTTGGAGAGGCAG
259 AACTCCGTACGCCTAAGCCAACCCATGAAATGAGCATGAGG-CACTCAATCGGTCGGAGAGGCAG
* * * * * * *
16066015 GATGCATAAGCCAGGGACCGACCCGATCCCCCACTGCGTGCTGTCGATCCTACTGCTGTAACCCT
323 AATGCATAAGCCGGGGACCGGCTCGATCCCCCACTGCGTGCTGTCGATCTTGCT-CTGCAACCCT
*
16066080 CGGTCA
387 CGATCA
* * *
16066086 GGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACAT-GGAATGAACTCCGTACGCCTA
1 GATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGAC-TGGGGATGAACTCCGTATGCCTA
** * * *
16066150 AACCAACCCATGAAACAAGCATACGGGTGCTCAGCTGGTCGGAGAGGT
65 AGTCAGCCCATGAAACAAGCATGCGGGCGCTCAGCTGGTCGGAGAGGT
16066198 AGAATGAGTA
Statistics
Matches: 739, Mismatches: 142, Indels: 33
0.81 0.16 0.04
Matches are distributed among these distances:
391 103 0.14
392 280 0.38
393 228 0.31
394 126 0.17
395 2 0.00
ACGTcount: A:0.25, C:0.27, G:0.26, T:0.22
Consensus pattern (392 bp):
GATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAA
GTCAGCCCATGAAACAAGCATGCGGGCGCTCAGCTGGTCGGAGAGGTCCGACTGGAGAGGTAGAA
TGCCAAGCCAAGGATCGACCCGATCCCTCATACGTGCTGTCCATTCCTGCTGCTGGTCCTGCTGC
CGTAACCCTCGGTCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAA
CTCCGTACGCCTAAGCCAACCCATGAAATGAGCATGAGGCACTCAATCGGTCGGAGAGGCAGAAT
GCATAAGCCGGGGACCGGCTCGATCCCCCACTGCGTGCTGTCGATCTTGCTCTGCAACCCTCGAT
CA
Found at i:16066249 original size:185 final size:185
Alignment explanation
Indices: 16065877--16066371 Score: 555
Period size: 185 Copynumber: 2.7 Consensus size: 185
16065867 CTGCTGGTAG
* * * *
16065877 TCCTGCTACCGTAATCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGAC
1 TCCTACTACCGTAACCCTCGGTCAGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGAC
* * ** ** *
16065942 ATGGAATGAACTCCATACGCCTAAGCCAACCAATGAAATTAGCATGTGGACGCTCAGCCGGTTGG
66 ATGGAATGAACTCCGTACGCCTAAGCCAACCCATGAAACAAGCATACGGACGCTCAGCCGGTCGG
* * *
16066007 AGAGGCAGGATGCATAAGCCAGGGACCGACCCGATCCCCCACTGCGTGCTGTCGA
131 AGAGGCAGAATGCATAAGCCAGGGACCGACCCGATCCCCCACTGCATGCTATCGA
* * *
16066062 TCCTACTGCTGTAACCCTCGGTCAGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGAC
1 TCCTACTACCGTAACCCTCGGTCAGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGAC
* ** *
16066127 ATGGAATGAACTCCGTACGCCTAAACCAACCCATGAAACAAGCATACGGGTGCTCAGCTGGTCGG
66 ATGGAATGAACTCCGTACGCCTAAGCCAACCCATGAAACAAGCATACGGACGCTCAGCCGGTCGG
* * ** * *
16066192 AGAGGTAGAATG-AGTAAGCC-GAGGACTGGTCCGGTCCCTCACTGCATGCTATCGA
131 AGAGGCAGAATGCA-TAAGCCAG-GGACCGACCCGATCCCCCACTGCATGCTATCGA
* * * * * **
16066247 TCCTGCTACCGTAACCCTTGGTCTGATCTGATCTTAGACTGGGAATGATCTCTGTATGCTTAGA-
1 TCCTACTACCGTAACCCTCGGTCAGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGAC
* * * * * * * **
16066311 TTGGGTATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGGACGCTCAGCCG
66 AT-GGAATGAACTCCGTACGCCTAAGCCAACCCATGAAACAAGCATACGGACGCTCAGCCG
16066372 ACTAGAGAGG
Statistics
Matches: 257, Mismatches: 50, Indels: 6
0.82 0.16 0.02
Matches are distributed among these distances:
184 3 0.01
185 254 0.99
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.23
Consensus pattern (185 bp):
TCCTACTACCGTAACCCTCGGTCAGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGAC
ATGGAATGAACTCCGTACGCCTAAGCCAACCCATGAAACAAGCATACGGACGCTCAGCCGGTCGG
AGAGGCAGAATGCATAAGCCAGGGACCGACCCGATCCCCCACTGCATGCTATCGA
Found at i:16066833 original size:160 final size:159
Alignment explanation
Indices: 16066496--16066855 Score: 445
Period size: 160 Copynumber: 2.3 Consensus size: 159
16066486 GACATGGAAC
* * * *
16066496 GAACTCTGTACGCCTAAGGCAACCCACGAAATGAGCGTGCGAGCACTCAACCGGTCGGAGAGGCA
1 GAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGAGCACTCAACCGGCCGAAGAGGCA
* * * *
16066561 GAATGCGCAACTCGGGGACTGGCCCAATCCCCTCCTGCGTGCTATCGATCCTACTATCGCAACCT
66 GAATGCACAACTCGGGGACTGGCCCAATCCCCCCCTGCGTGCTATCAATCCTACTATCACAACCT
* * *
16066626 TCGGTCTGATCCAATCTTAGACTAGGAAT
131 TCGATCTGATCCAATCTTAGACCAAGAAT
* * * * **
16066655 GAACTCCGTATGCCTAAGTCAAACCACGAAACGAGCGTGC-AGGCGCTCAGTCGGCCGAAGAGGC
1 GAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGA-GCACTCAACCGGCCGAAGAGGC
* * * * *
16066719 AGAATGCACAAGTCGGGGACTGGCTCGATCCCCCCCCTGTGTGCTATCAATCCTGCTATCACAAT
65 AGAATGCACAACTCGGGGACTGGCCCAAT-CCCCCCCTGCGTGCTATCAATCCTACTATCACAA-
* *
16066784 GC-TCGATCTGATCTAATCTTAGACCAAGAAT
128 CCTTCGATCTGATCCAATCTTAGACCAAGAAT
* *
16066815 GAACTCTGTATGCCTAAGTCAACCCATGAAATAAGCGTGCG
1 GAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCG
16066856 GGTACACAGC
Statistics
Matches: 168, Mismatches: 29, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
158 1 0.01
159 77 0.46
160 89 0.53
161 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.24, T:0.20
Consensus pattern (159 bp):
GAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGAGCACTCAACCGGCCGAAGAGGCA
GAATGCACAACTCGGGGACTGGCCCAATCCCCCCCTGCGTGCTATCAATCCTACTATCACAACCT
TCGATCTGATCCAATCTTAGACCAAGAAT
Found at i:16067637 original size:26 final size:26
Alignment explanation
Indices: 16067608--16067659 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16067598 CTGGTCTGAT
*
16067608 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16067634 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16067660 TCTATGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16068351 original size:26 final size:26
Alignment explanation
Indices: 16068314--16068364 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16068304 GCTCAAACTC
*
16068314 TTAGACTGGGAATGAACTCTGTATGT
1 TTAGACTGGGAATGAACTCCGTATGT
16068340 TTAGACAT-GGAATGAACTCCGTATG
1 TTAGAC-TGGGAATGAACTCCGTATG
16068365 CCTAAGCCAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGT
Found at i:16068683 original size:26 final size:26
Alignment explanation
Indices: 16068654--16068706 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16068644 CCAGTCCGAT
16068654 CTTAGACT-GAGAATGAACTCCGTATG
1 CTTAGACTAG-GAATGAACTCCGTATG
*
16068680 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16068706 C
1 C
16068707 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16068823 original size:183 final size:182
Alignment explanation
Indices: 16068509--16068863 Score: 403
Period size: 183 Copynumber: 1.9 Consensus size: 182
16068499 AAGACGTGGA
* * * **
16068509 ATGAACTCCCTATGCCTAAGTCAACCCATGAAATGGGCATATGGGCGCTCAGTCGATCGGAGAGC
1 ATGAACTCCCTATGCCTAAGTCAACCCACGAAATGAGCATACGGGCGCTCAACCGATCGGAGAGC
* * * *
16068574 AGATTGCGAAAGCCGATGATCAGCTCGATCCCCCTTGCGTGCTGTCGATCCTACTTCCATAACCC
66 AGAATGCGAAAGCCGAGGACCAGCTCGATCCCCCTTACGTGCTGTCGATCCTACTTCCA-AACCC
* *
16068639 TCGATCCAGTCCGATCTTAGACTGAG-AATGAACTCCGTATGCTTAGACTAGGG
130 TCGATCCAGTCCAATCTTAGACTG-GCAATGAACTCCATATGCTTAGACTAGGG
* * * *
16068692 ATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCCTGCGGGCGCTCAACCGGTCGGAGAGG
1 ATGAACTCCCTATGCCTAAGTCAACCCACGAAATGAGCATACGGGCGCTCAACCGATCGGAGA-G
* * * * * * *
16068757 CAGAATGTGCAAGCCGAGGGCCAGC-CTGGTCCCCC-TACGTGCTGTCGATCTTGCTGTTGC-AA
65 CAGAATGCGAAAGCCGAGGACCAGCTC-GATCCCCCTTACGTGCTGTCGATCCTAC--TTCCAAA
* * *
16068819 CCCTCGGTCTAGTTCAATCTTAGACTGGCAATGAACTCCATATGC
127 CCCTCGATCCAGTCCAATCTTAGACTGGCAATGAACTCCATATGC
16068864 CTAAGTCAAC
Statistics
Matches: 142, Mismatches: 25, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
182 1 0.01
183 111 0.78
184 27 0.19
185 3 0.02
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.23
Consensus pattern (182 bp):
ATGAACTCCCTATGCCTAAGTCAACCCACGAAATGAGCATACGGGCGCTCAACCGATCGGAGAGC
AGAATGCGAAAGCCGAGGACCAGCTCGATCCCCCTTACGTGCTGTCGATCCTACTTCCAAACCCT
CGATCCAGTCCAATCTTAGACTGGCAATGAACTCCATATGCTTAGACTAGGG
Found at i:16069140 original size:158 final size:158
Alignment explanation
Indices: 16068837--16069124 Score: 341
Period size: 158 Copynumber: 1.8 Consensus size: 158
16068827 CTAGTTCAAT
* * * *
16068837 CTTAGACTGGCAATGAACTCCATATGCCTAAGTCAACCTATGAAACGAGCATTCGAGTGCTAGGT
1 CTTAGACTGGCAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCATGCGAGTGCTAGCT
* * * * * ** *
16068902 CGACCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCTGATCCCCTTTGCGTGCTGTCGGTCCT
66 CGACCGAAGAGGCAGAACGCGCAAGCCGGGGATCGGCCTGATCCCCTCTACGTGCTACCGATCCT
16068967 ACTGCCACAACCCTCGATCCGACTGGGG
131 ACTGCCACAACCCTCGATCCGACTGGGG
* * *
16068995 CTTAGACATGG-AATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGC-AGGTGCTCA
1 CTTAGAC-TGGCAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCATGCGA-GTGCT-A
* * * *
16069058 GCT-GACCGAAGAGGCAGAACGCGTAAGCCGGGGATCGATCC-GGTCTCCTCTACGTGCTACCGA
63 GCTCGACCGAAGAGGCAGAACGCGCAAGCCGGGGATCG-GCCTGATCCCCTCTACGTGCTACCGA
16069121 TCCT
127 TCCT
16069125 GTTGTCGCAA
Statistics
Matches: 107, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
157 1 0.01
158 98 0.92
159 8 0.07
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
CTTAGACTGGCAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCATGCGAGTGCTAGCT
CGACCGAAGAGGCAGAACGCGCAAGCCGGGGATCGGCCTGATCCCCTCTACGTGCTACCGATCCT
ACTGCCACAACCCTCGATCCGACTGGGG
Found at i:16069904 original size:26 final size:26
Alignment explanation
Indices: 16069875--16069927 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16069865 GGCTCCAACT
16069875 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
* *
16069901 CTTATACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
16069927 C
1 C
16069928 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:16070195 original size:159 final size:159
Alignment explanation
Indices: 16069906--16070331 Score: 439
Period size: 159 Copynumber: 2.7 Consensus size: 159
16069896 GTATGCTTAT
** * * **
16069906 ACATGGAATGAACTCTGTATGCCTAAGCCAA-CCACGAAACGAGCGTGCGGGCGCTCAGTCAGTT
1 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCAGCC
* *
16069970 GGAGAGGCAGAATACGCAAGTCGGGGATCGACCCGATCCCCCTCTGCATGCTGGTGGTCTCACTG
66 GGAGAGGCAGAATACGCAAGTCGAGGATCGACCCGATCCCCCTCTGCATGCTGGTGGTCACACTG
* *
16070035 CCACAACCCT-GGGTCTGGCTGGGGCGTAG
131 CCACAACCCTCGGTTC-GACTGGGGCGTAG
* ** * *
16070064 ACATGTAATGAACTCCCTATGCCTAAGTGAACCCACGAAACGAGCGTTCGGGCACTGAGCC-GAC
1 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCAG-C
* * * * * * *
16070128 CGGAGAGGCATAATTCGCAAG-CTGAGGATCGGCTCGGTCCCCCTCTGCGTGCT-GTCGGTCACG
65 CGGAGAGGCAGAATACGCAAGTC-GAGGATCGACCCGATCCCCCTCTGCATGCTGGT-GGTCACA
* *
16070191 CTGCCACAACTCTCGGTTCGACTGGGGCTTAG
128 CTGCCACAACCCTCGGTTCGACTGGGGCGTAG
* * * * * ** * *
16070223 ACATGGAATGAACTCCCTATACCTAAGCCAACCCATGAAACGGGCATGCAGGCTTTCAGCCGGTC
1 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCAGCC
** * *
16070288 GGAGAGGCAGAATGTGCAAGTCGGGGATCGACTCGATCCTCCCT
66 GGAGAGGCAGAATACGCAAGTCGAGGATCGACCCGATCC-CCCT
16070332 GCGTGGTGTC
Statistics
Matches: 217, Mismatches: 43, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
158 30 0.14
159 177 0.82
160 10 0.05
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.19
Consensus pattern (159 bp):
ACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCCAGCC
GGAGAGGCAGAATACGCAAGTCGAGGATCGACCCGATCCCCCTCTGCATGCTGGTGGTCACACTG
CCACAACCCTCGGTTCGACTGGGGCGTAG
Found at i:16070412 original size:26 final size:26
Alignment explanation
Indices: 16070376--16070428 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16070366 CCGGTCCGAT
16070376 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTTTGTATG
*
16070402 CTTAGACTGGGGATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTTTGTATG
16070428 C
1 C
16070429 AAAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.13, G:0.28, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTTGTATG
Found at i:16071136 original size:26 final size:26
Alignment explanation
Indices: 16071099--16071151 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16071089 GGCTCAAACT
*
16071099 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
16071125 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
16071151 C
1 C
16071152 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATG
Found at i:16071470 original size:26 final size:26
Alignment explanation
Indices: 16071441--16071493 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16071431 CTGGTTTGAT
* *
16071441 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACACCGTATG
* *
16071467 CTTAGATTGGGGATGAACACCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
16071493 C
1 C
16071494 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGTATG
Found at i:16072158 original size:26 final size:26
Alignment explanation
Indices: 16072129--16072181 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16072119 CCGATCCGAT
16072129 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
16072155 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16072181 C
1 C
16072182 CTAAGTCAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16072534 original size:26 final size:26
Alignment explanation
Indices: 16072496--16072548 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16072486 CCGGTCTGAC
*
16072496 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACCCCGTATG
16072522 CTTAGAC-ATGGAATGAACCCCGTATG
1 CTTAGACTA-GGAATGAACCCCGTATG
16072548 C
1 C
16072549 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACCCCGTATG
Found at i:16073026 original size:26 final size:26
Alignment explanation
Indices: 16072997--16073049 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16072987 CCAGTCCGAT
*
16072997 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCATATG
16073023 CTTAGACTAGGGATGAACTCCATATG
1 CTTAGACTAGGGATGAACTCCATATG
16073049 C
1 C
16073050 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCATATG
Found at i:16074052 original size:12 final size:12
Alignment explanation
Indices: 16074035--16074060 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
16074025 GGAGATCCAA
16074035 AGTGAGCTTACC
1 AGTGAGCTTACC
16074047 AGTGAGCTTACC
1 AGTGAGCTTACC
16074059 AG
1 AG
16074061 GGATGGAAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (12 bp):
AGTGAGCTTACC
Found at i:16078765 original size:26 final size:26
Alignment explanation
Indices: 16078714--16078766 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
16078704 CCGGTCTGAC
**
16078714 CTTAGACTGGGAATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCATATG
*
16078740 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATAAACTCCATATG
16078766 C
1 C
16078767 CTAAATCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:16079035 original size:12 final size:12
Alignment explanation
Indices: 16079018--16079046 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
16079008 CCTCTGTGTG
16079018 CTGCCGGTCTCA
1 CTGCCGGTCTCA
16079030 CTGCCGGTCTCA
1 CTGCCGGTCTCA
16079042 CTGCC
1 CTGCC
16079047 ACAACTCTCG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.07, C:0.45, G:0.24, T:0.24
Consensus pattern (12 bp):
CTGCCGGTCTCA
Found at i:16080330 original size:159 final size:158
Alignment explanation
Indices: 16079984--16080476 Score: 515
Period size: 158 Copynumber: 3.1 Consensus size: 158
16079974 GCTTATACAT
* * * *
16079984 GGAATGAACTCCGTATGCTTAAGCTAACCCACGAAAAGAGCGTGTGGGTGCTCAGCCGGTCGGAG
1 GGAATGAACTCCGTATGCATAAGCCAACCCACGAAAAGAGCGTGCGGGTGCTAAGCCGGTCGGAG
* * * ** * * * *
16080049 AGGCAGAATGCACAATCCGAGGATCGAAATGGTCCCCCCTACGTGCTGTCGATCCTACTATCATA
66 AGGCAGAATGCGCAAGCCGGGGATCGGCATGGTCCCCCCTACGTGCTGCCGATCCTGCTACCACA
* * * *
16080114 ACCATCGGTCCGGTCCGATCTTAGACTG
131 ACCCTCGGTCTGATACGATCTTAGACTG
* * * * *** *
16080142 GGAATGAACTCTGTATGCATAAGTCAACCCATGAAATGAGCGTGCGGGTGCTAAGCCAACCGAAG
1 GGAATGAACTCCGTATGCATAAGCCAACCCACGAAAAGAGCGTGCGGGTGCTAAGCCGGTCGGAG
* ** * *
16080207 AGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTACGTGTTGCCGGTCCTGCTACCAC
66 AGGCAGAATGCGCAAGCCGGGGATCGGCATGGTCCCCC-CTACGTGCTGCCGATCCTGCTACCAC
* *
16080272 AACCCTCGGTCTGATTAGGGT-TTAGACAT-
130 AACCCTCGGTCTGA-TACGATCTTAGAC-TG
* * * * **
16080301 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGCCGCTCAA-CCGGTCGGA
1 GGAATGAACTCCGTATGCATAAGCCAACCCACGAAAAGAGCGTGCGGGTGCT-AAGCCGGTCGGA
* * * * *
16080365 GAGGCAGAATGCGCAAGTCGGGGATCGGCTTGGTCCCCCCTGCGTGCTGCCGATCTTGCTACCGC
65 GAGGCAGAATGCGCAAGCCGGGGATCGGCATGGTCCCCCCTACGTGCTGCCGATCCTGCTACCAC
* * *
16080430 TACTCTCGGTCTGATATGATCTTAGACTG
130 AACCCTCGGTCTGATACGATCTTAGACTG
16080459 GGAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
16080477 TTAGATTGGG
Statistics
Matches: 270, Mismatches: 59, Indels: 12
0.79 0.17 0.04
Matches are distributed among these distances:
157 5 0.02
158 139 0.51
159 120 0.44
160 6 0.02
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (158 bp):
GGAATGAACTCCGTATGCATAAGCCAACCCACGAAAAGAGCGTGCGGGTGCTAAGCCGGTCGGAG
AGGCAGAATGCGCAAGCCGGGGATCGGCATGGTCCCCCCTACGTGCTGCCGATCCTGCTACCACA
ACCCTCGGTCTGATACGATCTTAGACTG
Found at i:16080486 original size:26 final size:26
Alignment explanation
Indices: 16080450--16080502 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16080440 CTGATATGAT
16080450 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
16080476 CTTAGATTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16080502 C
1 C
16080503 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16081131 original size:26 final size:26
Alignment explanation
Indices: 16081102--16081154 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16081092 CCAGTCCGAT
16081102 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16081128 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16081154 C
1 C
16081155 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16082220 original size:159 final size:158
Alignment explanation
Indices: 16081860--16082352 Score: 452
Period size: 158 Copynumber: 3.1 Consensus size: 158
16081850 GCTTATACAT
* * * * ** * *** *
16081860 GGAATGAACTCCGTATGCTTAAGCTAACCCACGAAAAGAGCGTGTGGGTGCTCAGCCGGTCGGAG
1 GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGCCGCTCAACCAACCGAAG
* * * **** * * * * *
16081925 AGGCAGAATGCACAATCCGAGGATCGAAATGGTCCCCCCTACGTGCTGTCGATCCTACTATCATA
66 AGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCCTGCTACCACA
* * * **
16081990 ACCATCGGTCCGGTCCGATCTTAGACTG
131 ACCCTCGGTCTGATAGGATCTTAGACTG
* * * * **
16082018 GGAATGAACTCTGTATGCATAAGTCAACCCATGAAATGAGCGTGCGGGTGCT-AAGCCAACCGAA
1 GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGCCGCTCAA-CCAACCGAA
* * *
16082082 GAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGTTGCCGGTCCTGCTACCA
65 GAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCC-CTGCGTGCTGCCGATCCTGCTACCA
*
16082147 CAACCCTCGGTCTGATTAGGGT-TTAGACAT-
129 CAACCCTCGGTCTGA-TAGGATCTTAGAC-TG
* * * *** *
16082177 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGCCGCTCAACCGGTCGGAG
1 GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGCCGCTCAACCAACCGAAG
* ** * * *
16082242 AGGCAGAATGCGCAAGTCGGGGATCGGCTTGGTCCCCCCTGCGTGCTGCCGATCTTGCTACCGCT
66 AGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCCTGCTACCACA
* *
16082307 ACTCTCGGTCTGATATGATCTTAGACTG
131 ACCCTCGGTCTGATAGGATCTTAGACTG
16082335 GGAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
16082353 TTAGATTGGG
Statistics
Matches: 269, Mismatches: 59, Indels: 14
0.79 0.17 0.04
Matches are distributed among these distances:
157 6 0.02
158 138 0.51
159 119 0.44
160 6 0.02
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (158 bp):
GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCGTGCGGCCGCTCAACCAACCGAAG
AGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCCTGCTACCACA
ACCCTCGGTCTGATAGGATCTTAGACTG
Found at i:16082362 original size:26 final size:26
Alignment explanation
Indices: 16082326--16082378 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16082316 CTGATATGAT
16082326 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
16082352 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16082378 C
1 C
16082379 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16083244 original size:524 final size:521
Alignment explanation
Indices: 16082009--16083270 Score: 1330
Period size: 524 Copynumber: 2.4 Consensus size: 521
16081999 CCGGTCCGAT
*
16082009 CTTAGACTG-GGAATGAACTCTGTATGCATAAGTCAACCCATGAAATGAGCGTGCGGGTGCTAAG
1 CTTAGA-TGTGGAATGAACTCCGTATGCATAAGTCAACCCATGAAATGAGCGTGCGGGTGCTAAG
* * * *
16082073 CCAACCGAAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGTTGCCGGTC
65 -CAGCCGAAGAGGCATAATGCGCAAG-CGGGGATCGGCCCGGTCCCCCTCTGCATGCT-ACGGTC
16082138 CTGCTACCACAACCCTCGGTCTGAT-TAGGGT-TTAGACATGGAATGAACTCCCTATGCCTAAGC
127 CTGCTA-CA-AACCCTCGGTCTGATCT-GGGTCTTAGACATGGAATGAACTCCCTATGCCTAAGC
* * *
16082201 CAACCCACGAAACGGGCGTGCGGCCGCTCAACCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGAT
189 CAACCCACGAAACGGGCGTGCGGCCGCTCAACCGGCCGGAGAGGCAGAATGAGCAAGTCGAGGAT
*** * * **
16082266 CGGCTTGGTCCCCCCTGCGTGCTGCCGATCTTGCTACCGCTACTCTCGGTCTGATATGATCTTAG
254 CGGCCCAGTCCCCCCTGCATGCTGCCGATCTTGCTACCGCTACCCTCGGTCTGATACAATCTTAG
* * * *
16082331 ACTGGGAATGAACTCCGTATGCTTAGATTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAA
319 ACTGGGAATGAACTCCATATGCTTAGACTGCGGATGAACTCCGTATGCCAAAGTCAACCCACGAA
* * ** *
16082396 TCAAGCATGTGGGCGCTCAGTCGGTCGGGGAGGCCGACTAGAGATGCATAATACGCAAGCTAGGG
384 TCAAGCATGTGGGCGCTCAGCCGGTCGAGGAGGCCGACTAGAGACACATAATACGCAAGCCAGGG
* * * *
16082461 ATCAACCCGATCCCCTTTTACGTGCTGCCAATTCGCTACCGGTCCTGCTACAAGAACCCTCGGTC
449 ATCAACCCGATCCCC-TCTACGTGCTACCAATCCGCTACCGGTCCTGCTACAACAACCCTCGGTC
**
16082526 CTGCTGGGG
513 CTGCTAAGG
* * * ** *
16082535 CTTAGACGTGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGTGTGCGACAT--TGAG
1 CTTAGATGTGGAATGAACTCCGTATGCATAAGTCAACCCATGAAATGAGCGTGCG-GGTGCTAAG
* * * * * * *
16082598 CCGATCGAAGAGGCATAATGCGCAAGCTGAGGATCGGCCCGGTCTCTCTTTGTATGCTACTGGTC
65 CAG-CCGAAGAGGCATAATGCGCAAGC-GGGGATCGGCCCGGTCCCCCTCTGCATGCTAC-GGT-
* * * *
16082663 CCATTGCTA-AAACCCTCAGTCCGA-CTGGGGCTTAGACATGGAA-GAACACCCTATGCCTAAGC
126 CC--TGCTACAAACCCTCGGTCTGATCTGGGTCTTAGACATGGAATGAACTCCCTATGCCTAAGC
* * * *
16082725 CAACCCACGAAACGGGCGTGCGGGCGCTCAGCCGGCCGGAGAGGTAGAATGAGCAAGTTGAGGAT
189 CAACCCACGAAACGGGCGTGCGGCCGCTCAACCGGCCGGAGAGGCAGAATGAGCAAGTCGAGGAT
* * * * * *
16082790 TGGCCCAGTCCCCCCTGCATGCTGTCGATCTTGCTGCTGCTACCCTCGGT-TCGGTCCAATCTTA
254 CGGCCCAGTCCCCCCTGCATGCTGCCGATCTTGCTACCGCTACCCTCGGTCT-GATACAATCTTA
* * *
16082854 GACTGGGAATGAACTCCATATGCTTTGACTGCGGATGAACTCTGTATGCCAAAGTCAACCCATGA
318 GACTGGGAATGAACTCCATATGCTTAGACTGCGGATGAACTCCGTATGCCAAAGTCAACCCACG-
* * * * * ** *
16082919 AAT-GAGCGTGTGGGCGCTCAGCCGGTCGAGGAGGCGGTC-GGAGACACATAATGTGCAAGCCGG
382 AATCAAGCATGTGGGCGCTCAGCCGGTCGAGGAGGCCGACTAGAGACACATAATACGCAAGCCAG
* * * *
16082982 GGATCAGCCCGATCCCC-CTACGTGCTACCGATCCCGCTGCCGGTCCTGCTACCACAACCCTCGG
447 GGATCAACCCGATCCCCTCTACGTGCTACCAAT-CCGCTACCGGTCCTGCTACAACAACCCTCGG
16083046 T-CTGGCTAAGG
511 TCCT-GCTAAGG
* * * * *
16083057 CTTAGATGTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAACGTGCGGGTGCTCAGT
1 CTTAGATGTGGAATGAACTCCGTATGCATAAGTCAACCCATGAAATGAGCGTGCGGGTGCTAAG-
* * * * * * ** * *
16083122 CAGCCGGAGAGGCAGAATGCACAAGTCGGGGATCGGTCCGATCCCCCCCAACATGCCATCGATCC
65 CAGCCGAAGAGGCATAATGCGCAAG-CGGGGATCGGCCCGGTCCCCCTCTGCATGCTA-CGGTCC
* * * * * **
16083187 TGGTATCATAACCCTCGGTCTGATCT-GATCTTTGAC-TGGGAATGTACTCCGTATGCCTAAGTT
128 TGCTA-CA-AACCCTCGGTCTGATCTGGGTCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCC
* *
16083250 AACCCACGAAATGAGCGTGCG
190 AACCCACGAAACGGGCGTGCG
16083271 AGAGTTGAGC
Statistics
Matches: 599, Mismatches: 112, Indels: 52
0.79 0.15 0.07
Matches are distributed among these distances:
520 4 0.01
521 15 0.03
522 85 0.14
523 100 0.17
524 258 0.43
525 79 0.13
526 52 0.09
527 1 0.00
528 5 0.01
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (521 bp):
CTTAGATGTGGAATGAACTCCGTATGCATAAGTCAACCCATGAAATGAGCGTGCGGGTGCTAAGC
AGCCGAAGAGGCATAATGCGCAAGCGGGGATCGGCCCGGTCCCCCTCTGCATGCTACGGTCCTGC
TACAAACCCTCGGTCTGATCTGGGTCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
CGAAACGGGCGTGCGGCCGCTCAACCGGCCGGAGAGGCAGAATGAGCAAGTCGAGGATCGGCCCA
GTCCCCCCTGCATGCTGCCGATCTTGCTACCGCTACCCTCGGTCTGATACAATCTTAGACTGGGA
ATGAACTCCATATGCTTAGACTGCGGATGAACTCCGTATGCCAAAGTCAACCCACGAATCAAGCA
TGTGGGCGCTCAGCCGGTCGAGGAGGCCGACTAGAGACACATAATACGCAAGCCAGGGATCAACC
CGATCCCCTCTACGTGCTACCAATCCGCTACCGGTCCTGCTACAACAACCCTCGGTCCTGCTAAG
G
Found at i:16083562 original size:26 final size:26
Alignment explanation
Indices: 16083533--16083583 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16083523 CTGATCCGAT
16083533 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
*
16083559 CTTAGACTAGGGATGAACTTCGTAT
1 CTTAGACTAGGGATGAACTCCGTAT
16083584 ACCTAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:16083876 original size:343 final size:341
Alignment explanation
Indices: 16083236--16083953 Score: 899
Period size: 343 Copynumber: 2.1 Consensus size: 341
16083226 GAATGTACTC
* * *
16083236 CGTATGCCTAAGTTAACCCACGAAATGAGCGTGCGAGAGTTGAGCCGACCGAAGAGGCATAATGC
1 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGAGATGAGCCGACCGAAGAGGCATAATGC
* * * * * * * *
16083301 GTAAGTCGGGGATCGACCCGGTCCTCCTCTGTGAGCTGTCGGTCCCGCTGCCACAACCCTTGGTC
66 GTAAGACAGGGATCGACCCGATCCCCCTCTGTGAGCTATCGGTCCCGCTACCACAACCCTCGATC
* *
16083366 CAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAACCCACGAAACGGGCGTGCG
131 CAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAACCCACGAAACAGGCGTGCA
* * *
16083431 GGTGCTCAGCTGGTCGAAGAGGCAGAATGCGCAAGCCGAGGATCCGCTCGATCCCCCTACGTGCT
196 GGCGCTCAGCTGGTCGAAGAGGCAGAATGCGCAAGCCGAGGATCCACCCGATCCCCCTACGTGCT
* * **
16083496 ACCGATCTTACTACCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCT
261 ACCGATCCTACTACCGCAACCCACGGTCTGATCCGATCTTAGACTACG-ATGAACTCCGTATGCT
*
16083561 TAGACTAGGGATGAACTT
325 TAGACTAGGCATGAAC-T
* * * * *
16083579 CGTATACCTAAGTCAACCCACGAAACGAGGGTGC-AGGCGATGAGTCGGCCGAAGAGGCATAATG
1 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGA-GAGATGAGCCGACCGAAGAGGCATAATG
* * * *
16083643 C-TCAAGACAGGGATTGGCCCGATCCCCCTCTGTGTGCTATCGGTCCCGCTACCAGAACCCTCGA
65 CGT-AAGACAGGGATCGACCCGATCCCCCTCTGTGAGCTATCGGTCCCGCTACCACAACCCTCGA
* * *
16083707 TCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC-AACCCATGAAACAGGCGTG
129 TCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAACCCACGAAACAGGCGTG
* * * *
16083771 CAGGCGCTCA-ATCGGTCGGAGAGGCAGAATGCGCAAGCCGAGGA-CCAACCCGGTCCCCCCTGC
194 CAGGCGCTCAGCT-GGTCGAAGAGGCAGAATGCGCAAGCCGAGGATCC-ACCCGAT-CCCCCTAC
* ** * * * **
16083834 GTGCTATCGATCCTGGTATCGTAACCCACGGT-TGGGTCCGATCTTAGACTACGATGAACTTTGT
256 GTGCTACCGATCCTACTACCGCAACCCACGGTCT-GATCCGATCTTAGACTACGATGAACTCCGT
16083898 ATGCTTAGACTAGGCATGAACT
320 ATGCTTAGACTAGGCATGAACT
*
16083920 CTGTATGCCTATGTCAACCCACGAAACGAGCGTG
1 C-GTATGCCTAAGTCAACCCACGAAACGAGCGTG
16083954 TGGATGCTCA
Statistics
Matches: 320, Mismatches: 48, Indels: 15
0.84 0.13 0.04
Matches are distributed among these distances:
341 5 0.02
342 120 0.38
343 195 0.61
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (341 bp):
CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGAGATGAGCCGACCGAAGAGGCATAATGC
GTAAGACAGGGATCGACCCGATCCCCCTCTGTGAGCTATCGGTCCCGCTACCACAACCCTCGATC
CAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAACCCACGAAACAGGCGTGCA
GGCGCTCAGCTGGTCGAAGAGGCAGAATGCGCAAGCCGAGGATCCACCCGATCCCCCTACGTGCT
ACCGATCCTACTACCGCAACCCACGGTCTGATCCGATCTTAGACTACGATGAACTCCGTATGCTT
AGACTAGGCATGAACT
Found at i:16083924 original size:26 final size:25
Alignment explanation
Indices: 16083876--16083927 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
16083866 TGGGTCCGAT
*
16083876 CTTAGACTACGATGAACTTTGTATG
1 CTTAGACTACGATGAACTCTGTATG
*
16083901 CTTAGACTAGGCATGAACTCTGTATG
1 CTTAGACTACG-ATGAACTCTGTATG
16083927 C
1 C
16083928 CTATGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 10 0.42
26 14 0.58
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (25 bp):
CTTAGACTACGATGAACTCTGTATG
Found at i:16084939 original size:159 final size:159
Alignment explanation
Indices: 16084619--16085033 Score: 566
Period size: 159 Copynumber: 2.6 Consensus size: 159
16084609 AATTCCGTAT
* * * *
16084619 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAACGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * *
16084684 CCGACCGGAGAGGCAGAATGCACAA-GCGGGGATCGGCCCGGTCCCCCTTTGCGTGCTGCCGGTC
66 CCGACCGGAGAGGCATAATGCGCAAGGCGGGGATCGGCCCGGTACCCCTTTGCGTGCTGCCGGTC
**
16084748 CCGATGCCACAACCCTCGATCCGGTTGGG
131 CCGATGCCACAACCCTCGATCCGACTGGG
* ** *
16084777 GCTTAGAC-TGGGAATGAACTCCCTATGCATAAGTTAACCCATGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * *
16084841 GCCCACCGAAGAGGCATAATGCGCAAGGCGGGGATCGGCCCGGTACCCCTTTGCGTGCTGGCGGT
65 GCCGACCGGAGAGGCATAATGCGCAAGGCGGGGATCGGCCCGGTACCCCTTTGCGTGCTGCCGGT
* * **
16084906 CTCGTTGCCACAACCCTCGATTTGACTGGG
130 CCCGATGCCACAACCCTCGATCCGACTGGG
* * *
16084936 GCTTAGACATTGG-ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTTA
1 GCTTAGACA-TGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* *
16085000 GCCGACCGGAGAGGTATAATGCGCAAGCCGGGGA
65 GCCGACCGGAGAGGCATAATGCGCAAGGCGGGGA
16085034 CCAACCCGGT
Statistics
Matches: 223, Mismatches: 30, Indels: 7
0.86 0.12 0.03
Matches are distributed among these distances:
157 1 0.00
158 76 0.34
159 143 0.64
160 2 0.01
161 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.31, T:0.17
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CCGACCGGAGAGGCATAATGCGCAAGGCGGGGATCGGCCCGGTACCCCTTTGCGTGCTGCCGGTC
CCGATGCCACAACCCTCGATCCGACTGGG
Found at i:16085130 original size:26 final size:26
Alignment explanation
Indices: 16085094--16085146 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16085084 TGGGTCCAAT
*
16085094 CTTACACTGGGAATAAACTTTGTATG
1 CTTACACTGGGAATAAACTCTGTATG
* * *
16085120 CTTAGACTGGGGATGAACTCTGTATG
1 CTTACACTGGGAATAAACTCTGTATG
16085146 C
1 C
16085147 CTATGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTACACTGGGAATAAACTCTGTATG
Found at i:16086245 original size:159 final size:159
Alignment explanation
Indices: 16085842--16086265 Score: 464
Period size: 159 Copynumber: 2.7 Consensus size: 159
16085832 ATTTTCGTAT
* *
16085842 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCT-CTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGG-TGCTCA
* * * ** * *
16085906 GCCGACCGGAGAGGCAAAATGATCAAGTCGTGGATCGGCTCGGTCCCGCTTTGCGTGCTGCCGGT
65 GCCGGCTGGAAAGGCAAAATGCGCAAGTCGGGGATCGGCCCGGTCCCGCTTTGCGTGCTGCCGGT
* *
16085971 CCTGATGCCACAACCCTCGATCTGATTGGG
130 CCTGATGCCACAACCCTCGATCCGACTGGG
* * * * * *
16086001 GCTTAGAC-TAGGAATGAACTCCCTATGCATAAGTCAACCCATGAAATGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCA
* * * * *
16086065 GCCGG-TCGAAGAGGCATAATGCGCAAGGCGGGGATCGGCCCGGTACCC-CTTTGCGTGGTGGCG
65 GCCGGCTGGAA-AGGCAAAATGCGCAAGTCGGGGATCGGCCCGGT-CCCGCTTTGCGTGCTGCCG
* * *
16086128 GT-CTCGTTGCCACAACCCTCGGTCCGGCTGGG
128 GTCCT-GATGCCACAACCCTCGATCCGACTGGG
* *
16086160 GCTTAGACATGGAATGAACTCCCTATGCCTAGGCCAACCCACGAAAC-AGGTGTGCGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGGTGCTCA
* * * * *
16086224 GCTGGCTGGAAAGGTAGAATGCGCAAATCGGCGATCGGCCCG
65 GCCGGCTGGAAAGGCAAAATGCGCAAGTCGGGGATCGGCCCG
16086266 ATCTCCCCTG
Statistics
Matches: 217, Mismatches: 40, Indels: 16
0.79 0.15 0.06
Matches are distributed among these distances:
158 6 0.03
159 203 0.94
160 8 0.04
ACGTcount: A:0.22, C:0.28, G:0.31, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
CCGGCTGGAAAGGCAAAATGCGCAAGTCGGGGATCGGCCCGGTCCCGCTTTGCGTGCTGCCGGTC
CTGATGCCACAACCCTCGATCCGACTGGG
Found at i:16086370 original size:26 final size:26
Alignment explanation
Indices: 16086319--16086371 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16086309 CCAATTCGAT
*
16086319 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
16086345 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16086371 C
1 C
16086372 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16086717 original size:354 final size:343
Alignment explanation
Indices: 16086001--16086817 Score: 842
Period size: 354 Copynumber: 2.4 Consensus size: 343
16085991 TCTGATTGGG
* * *
16086001 GCTTAGACTAGGAATGAACTCCCTATGCATAAGTCAACCCATGAAATGAGCGTGCGGGCGCTGAG
1 GCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAG
* * * * * *
16086066 CCGGTC-GAAGAGGCATAATGCGCAAGGCGGGGATCGGCCCGGTACCCCTTTGCGTGGTGGCGGT
66 CCGGTCGGAA-AGGCAAAATGCACAAGTCGGGGATCGGCCCGATCCCCCTTTGCGTGGTGCCGGT
* * *
16086130 CTCGTTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAGGCC
130 CTCGCTGCCACAACCCTCGGTCCGGCTGGGGCATAGACATGGAATGAACTCCCTATGCCTAAGCC
* *
16086195 AACCCACGAAACAGGTGTGCGGGTGCTCAGCTGGCTGGAAAGGTAGAATGCGCAAATCGGCGATC
195 AACCCACGAAACAGGTGTGCGGGTGCTCAGCTGGCTGGAAAGGCAGAATGCGCAAACCGGCGATC
* * * * * ** * **
16086260 GGCCCGATCTCCCCTGCGTGCTACCGATCTTGCTGCCATAACCCTCGGTCCAATTCGATCTTAGA
260 AGCCCGATCCCCCCTGCATGCCACCGATCCTGCAACCACAACCCTCGACCCAATTCGATCTTAGA
*** *
16086325 CTGGGAATGAACTTCATAT
325 CTAAAAATGAACTCCATAT
* * * *
16086344 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTCAG
1 GCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAG
* * *
16086409 TCGGTCGGAAAGGCAAAATGCACAAGTCGGGGATCAGCCCAATCCCCCTCTGTGCGCTGTCGATC
66 CCGGTCGGAAAGGCAAAATGCACAAGTCGGGGATCGGCCCGATCCCCCT-T-TGCG-TG--G---
* * *
16086474 CCACTGCCGGTC-CTGCTGCCACAACCCTCGGTCCGGTTGGGGCATAGACATGGAATTAACTCCG
123 ----TGCCGGTCTC-GCTGCCACAACCCTCGGTCCGGCTGGGGCATAGACATGGAATGAACTCCC
* * * *
16086538 TATGCCTAAGCCAACCCATGAAACGAGG-GTGC-GGTTCTCAG-TCGG-TCGGAGAGGCAGATTG
183 TATGCCTAAGCCAACCCACGAAAC-AGGTGTGCGGGTGCTCAGCT-GGCT-GGAAAGGCAGAATG
* * * * * * * *
16086599 CGTAAGCCGGGGATCAGTCTGGTCCCCCCTGCATGCCGCCGATCCTGCAACCGCAACCCTCGACC
245 CGCAAACCGGCGATCAGCCCGATCCCCCCTGCATGCCACCGATCCTGCAACCACAACCCTCGACC
** *
16086664 C-GGTCTGATCTTAGACTAAAAATGAACTCCGTAT
310 CAATTC-GATCTTAGACTAAAAATGAACTCCATAT
* * *
16086698 GCTTAGAC-ATGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAATAAGCGTGCGGGCGCTCA
1 GCTTAGACTA-GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCA
* * ** * *
16086762 GCCAGCCGGACGGGTAGAATGCACAAGTCGGGGATCGGCCCGATCCCCC-TTGCGTG
65 GCCGGTCGGAAAGGCAAAATGCACAAGTCGGGGATCGGCCCGATCCCCCTTTGCGTG
16086818 CTATCGATCC
Statistics
Matches: 386, Mismatches: 69, Indels: 31
0.79 0.14 0.06
Matches are distributed among these distances:
343 95 0.25
344 4 0.01
345 4 0.01
346 2 0.01
348 1 0.00
350 2 0.01
351 4 0.01
352 1 0.00
353 4 0.01
354 188 0.49
355 78 0.20
356 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (343 bp):
GCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAG
CCGGTCGGAAAGGCAAAATGCACAAGTCGGGGATCGGCCCGATCCCCCTTTGCGTGGTGCCGGTC
TCGCTGCCACAACCCTCGGTCCGGCTGGGGCATAGACATGGAATGAACTCCCTATGCCTAAGCCA
ACCCACGAAACAGGTGTGCGGGTGCTCAGCTGGCTGGAAAGGCAGAATGCGCAAACCGGCGATCA
GCCCGATCCCCCCTGCATGCCACCGATCCTGCAACCACAACCCTCGACCCAATTCGATCTTAGAC
TAAAAATGAACTCCATAT
Found at i:16087929 original size:26 final size:26
Alignment explanation
Indices: 16087891--16087943 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16087881 GGTTCAAAAT
* *
16087891 CTTAGACGGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTACGTATG
*
16087917 CTTAGACATGGAATGAACTACGTATG
1 CTTAGACAGGGAATGAACTACGTATG
16087943 C
1 C
16087944 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTACGTATG
Found at i:16088483 original size:159 final size:159
Alignment explanation
Indices: 16087917--16088472 Score: 478
Period size: 159 Copynumber: 3.5 Consensus size: 159
16087907 ACTCCGTATG
* * * * * * *
16087917 CTTAGACATGGAATGAACTACGTATGCCTAAGCCAACCCATGAAATGAGTGTACAGGCACTCAGT
1 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * * *
16087982 CGGTCGAAGAGGCAAAATGCACAAGCCGGGGATCGGCCTGGTCCCCCTCTGTGTACTGTCGATCC
66 CGGTCGAAGAGGCAAAATGCATAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTATCGATCC
* * * * *
16088047 TACTACCACAACCCTCGGTCTGATCTGAT
131 TGCTGCCACAACCCTCGATCCGGTCTGAT
* * * * * * *
16088076 GTTAGAC-TACGAATGAAC-TCTTTATGCATAAGTCAACCCACGAAACGAGCGTATGGGCGCTGA
1 CTTAGACAT-GGAATGAACTTC-GTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
* * * * * * * *
16088139 GCCGGCCGAAGAGGCATAATGAATAAGTCAGGGATAGGCCCGGTCCCCCTCTGCGTGCTATTGGT
64 GCCGGTCGAAGAGGCAAAATGCATAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTATCGAT
* **
16088204 CCCGCTGCCACAACCCTC-AGTCCGG-CTAGGG
129 CCTGCTGCCACAACCCTCGA-TCCGGTCT-GAT
* * * * * * * *
16088235 CTTACACATGAAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC-AGGCATGCGGGCGCTTAG
1 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGA-GCGTACGGGCGCTCAG
** * * * * *
16088299 CCAATCGGAGAGGCAAAATGCGTAAGCCGGGGTTCGATCCGGGTCCCCC-CTGCGTGCTATCGAT
65 CCGGTCGAAGAGGCAAAATGCATAAGCCGGGGATCG-GCCCGGTCCCCCTCTGCGTGCTATCGAT
* **
16088363 CTTGCTGCTGCAACCCTCGATCCGGTCTGAT
129 CCTGCTGCCACAACCCTCGATCCGGTCTGAT
* **
16088394 CTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAG
1 CTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* *
16088458 TCGGTCGAAAAGGCA
65 CCGGTCGAAGAGGCA
16088473 TAAAGCGTAA
Statistics
Matches: 302, Mismatches: 83, Indels: 24
0.74 0.20 0.06
Matches are distributed among these distances:
158 6 0.02
159 280 0.93
160 16 0.05
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.20
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGC
CGGTCGAAGAGGCAAAATGCATAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTATCGATCC
TGCTGCCACAACCCTCGATCCGGTCTGAT
Found at i:16088765 original size:26 final size:26
Alignment explanation
Indices: 16088736--16088788 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16088726 TCAATCCAAT
16088736 CTTAGAC-TGGGAATGAACTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
*
16088762 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
16088788 C
1 C
16088789 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:16090649 original size:26 final size:26
Alignment explanation
Indices: 16090613--16090665 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16090603 GTTCACTTAG
*
16090613 GCATACGGAGTTCA-TTCCACGTCTAA
1 GCATACGGAGTTCACTCCCA-GTCTAA
16090639 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
16090665 G
1 G
16090666 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:16091131 original size:184 final size:181
Alignment explanation
Indices: 16090700--16091132 Score: 458
Period size: 184 Copynumber: 2.3 Consensus size: 181
16090690 CAGTAGGACT
* * * * *
16090700 AGCAGTAGGATCGACAGCACGTAGGGGGGATCGGGCCGATCCCCGAGTTACGCATTCTGCCTCTC
1 AGCAGCAGGATCGGCAGCACGTA-GGGGGACCAGGCCGAT-CCCGACTTACGCATTCTGCCTCTC
* ** *
16090765 CGGCCGGTTGAGCACCCGCACGCTCGTTTCGTCGGTTGACTTAGATGTACTGAGTTCATCCCCAG
64 CGGCCGGCTGAGCACCCGCACGCTCGTTTCGTCGGTTGACTTAGA-GTACAAAGCTCATCCCCAG
* * * *
16090830 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGC
128 TCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACTGGACCAAAGGTTGC
* * * * * * *
16090884 AGCAGCAGGATCGGCAGAACGCAAGGGGGACTAAGCCGATCCCCAGCTTGCGCATTCTGCCTCTT
1 AGCAGCAGGATCGGCAGCACG-TAGGGGGACCAGGCCGATCCCGA-CTTACGCATTCTGCCTCTC
* * * *
16090949 CGGCCGGCTGAGC-CCGCGCATGCTTGTTTCGTGGGTTGACTTACGCA-TACAAAGCTCATCCCT
64 CGGCCGGCTGAGCACC-CGCACGCTCGTTTCGTCGGTTGACTTA-G-AGTACAAAGCTCATCCCC
* * *
16091012 AGTGTAAGCATACGGAGTTCATTCCCAATTTAAGATCAGACTGGATCAAAGGTTGC
126 AGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACTGGACCAAAGGTTGC
* * ** *
16091068 -GATAGCAGGATCGGTAGCACGTAGGTGGGACCAGGCTAATCCCTGACTTACGCATTATGCCTCT
1 AG-CAGCAGGATCGGCAGCACGTAGG-GGGACCAGGCCGATCCC-GACTTACGCATTCTGCCTCT
16091132 C
63 C
16091133 TGACTTAGGC
Statistics
Matches: 202, Mismatches: 39, Indels: 16
0.79 0.15 0.06
Matches are distributed among these distances:
183 10 0.05
184 188 0.93
185 3 0.01
186 1 0.00
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (181 bp):
AGCAGCAGGATCGGCAGCACGTAGGGGGACCAGGCCGATCCCGACTTACGCATTCTGCCTCTCCG
GCCGGCTGAGCACCCGCACGCTCGTTTCGTCGGTTGACTTAGAGTACAAAGCTCATCCCCAGTCT
AAGCATACGGAGTTCATTCCCAATCTAAGATCAGACTGGACCAAAGGTTGC
Found at i:16091561 original size:26 final size:26
Alignment explanation
Indices: 16091532--16091584 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16091522 GTTGACTTAG
*
16091532 GCATACAGAGTTTATCCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAGTCTAA
*
16091558 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAGTCTAA
16091584 G
1 G
16091585 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAGTCTAA
Found at i:16092625 original size:26 final size:26
Alignment explanation
Indices: 16092595--16092646 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
16092585 ATTGACTTAG
16092595 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
16092621 GCATACAGAGTTCATCCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16092647 CATCGAACCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16093002 original size:159 final size:158
Alignment explanation
Indices: 16092621--16093121 Score: 361
Period size: 159 Copynumber: 3.2 Consensus size: 158
16092611 CCCAGTCTAA
* * ** * *
16092621 GCATAC-AGAGTTCA-TCCCTAGTCTAACATCGAACCAGACCGAGGGTTACGGGAGTAGGATCGG
1 GCATACGA-AGTTCATTCCC-AGTCTAAGATCAAACTGGACCGAGGGTTACGGCAGTAGGATCGA
* * * * * *
16092684 CAGCACGCAAGGGGGATCGGGCTGATCCTCGGCTTGCGTATTTTGCCTCTCCGACCGATTGAGCG
64 CAGCACGAAAAGGGGATCGGGCCGATCCTCGACTTGCGCATTATGCCTCTCCGACCGATTGAGCG
* * * *
16092749 CCCGCACGCCCGTTTTGTGGGTTGGCTTAG
129 CCCGAACGCCCATTTCGTGGGTTGACTTAG
* * * ** * ** * * *
16092779 GCATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGTCGGACCGAGGGTTGTGACAG-CGGAACCG
1 GCATACGAAGTTCATTCCCA-GTCTAAGATCAAACT-GGACCGAGGGTTACGGCAGTAGG-ATCG
* * * *
16092841 ACAGCACGTAAAAGGGGATCGGGCCGATCCTCGACTTGCGCATTATGCCTCTCTGGCAGGCTT-A
63 ACAGCACG-AAAAGGGGATCGGGCCGATCCTCGACTTGCGCATTATGCCTCTCCGAC-CGATTGA
* *
16092905 GCGCCTGAACGCTCATTTCGTGGGTTGACTTAG
126 GCGCCCGAACGCCCATTTCGTGGGTTGACTTAG
*
16092938 GCATACGAAGTTCATTCCCAGTCTAAGATCAAACTGGACCGAGGGTTACGGTAGTAGGATCGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAAACTGGACCGAGGGTTACGGCAGTAGGATCGACA
* * * ** * ** * * * * * * *
16093003 GTATGCAGGGGGGA-CCGATCGATCCCCGACTTGCACATTCTGCCTCTCTGGCCGACTGAGTGCC
66 GCACGAAAAGGGGATCGGGCCGATCCTCGACTTGCGCATTATGCCTCTCCGACCGATTGAGCGCC
* * * * *
16093067 CGTACGCTCGTTTCGAGGGTTGGCTTAG
131 CGAACGCCCATTTCGTGGGTTGACTTAG
* * *
16093095 CCATGCGAAGTTCAAT-CCATGTCTAAG
1 GCATACGAAGTTCATTCCCA-GTCTAAG
16093122 CTTATGGAGT
Statistics
Matches: 264, Mismatches: 67, Indels: 25
0.74 0.19 0.07
Matches are distributed among these distances:
156 5 0.02
157 85 0.32
158 49 0.19
159 114 0.43
160 11 0.04
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAAACTGGACCGAGGGTTACGGCAGTAGGATCGACA
GCACGAAAAGGGGATCGGGCCGATCCTCGACTTGCGCATTATGCCTCTCCGACCGATTGAGCGCC
CGAACGCCCATTTCGTGGGTTGACTTAG
Found at i:16093997 original size:194 final size:195
Alignment explanation
Indices: 16093666--16094031 Score: 486
Period size: 194 Copynumber: 1.9 Consensus size: 195
16093656 ACCAAGGGTT
* ** ** * *
16093666 GCCACAGCAGGATCGATAGCATGCAGGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTC
1 GCCACAGCAGGATCGACAGCACACAGGGGGGACCGAATCGATCCCCGACTTACGCATTCTACCTC
* * * * * *
16093731 TCTAATCGGCTGAGCGCCCGAACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGGGTCCATTCCA
66 TCTAACCAGCTGAACGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTCCATCCCA
*
16093796 TGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGATCGGATAGAGGGTTGCGACAGCAAG
131 TGTCTAAGCATACGGAGTCCATTCCCAATCTAAGATCAGATCGGATAGAGGGTTGCGACAGCAAG
*
16093861 GCCAGCAGCAGGATCGACAGCACATAGGGGGGACC-AATCGATCCCCGACTTACGCATTCTACCT
1 GCCA-CAGCAGGATCGACAGCACACAGGGGGGACCGAATCGATCCCCGACTTACGCATTCTACCT
** * * * *
16093925 CTC-GGCCAGTTGAACGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCC
65 CTCTAACCAGCTGAACGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTCCAT-CC
* *
16093989 CA-GTCTAAGCATACGGAGTCCATTCCCAGTCTAAGATCGGATC
129 CATGTCTAAGCATACGGAGTCCATTCCCAATCTAAGATCAGATC
16094032 AAACAAAGGG
Statistics
Matches: 146, Mismatches: 23, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
194 85 0.58
195 35 0.24
196 26 0.18
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (195 bp):
GCCACAGCAGGATCGACAGCACACAGGGGGGACCGAATCGATCCCCGACTTACGCATTCTACCTC
TCTAACCAGCTGAACGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTCCATCCCA
TGTCTAAGCATACGGAGTCCATTCCCAATCTAAGATCAGATCGGATAGAGGGTTGCGACAGCAAG
Found at i:16094000 original size:26 final size:26
Alignment explanation
Indices: 16093971--16094023 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16093961 GTTGACTTAG
*
16093971 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTCCATCCCCAGTCTAA
* *
16093997 GCATACGGAGTCCATTCCCAGTCTAA
1 GCATACAGAGTCCATCCCCAGTCTAA
16094023 G
1 G
16094024 ATCGGATCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTCCATCCCCAGTCTAA
Found at i:16094286 original size:695 final size:675
Alignment explanation
Indices: 16092557--16094331 Score: 1911
Period size: 681 Copynumber: 2.6 Consensus size: 675
16092547 TCTCTGGTCG
* * *
16092557 GTTGAACATCCGCATGCTCGTTTCATGGATTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAG
1 GTTGAAC-GCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAG
* * * ** * * *
16092622 CATACAGAGTTCA-TCCCTAGTCTAACATCGAACCAGACCGAGGGTTACGGGAGTAGGATCGGCA
65 CATACGGAG-TCATTCCC-AGTCTAA-ATCGGATCAGACCGAGGGTTGTGGCAATAGGATCGACA
* * * * *
16092686 GCACGCAAGGGGGATCGGGCTGATCCTCGGCTTGCGTATTTTGCCTCTCCGACCGATTGAGCGCC
127 GCACGTAAGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACCGGTTGAGCGCC
* *
16092751 CGCACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCG
192 CGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCT-G
* * * * *
16092815 GACCGAGGGTTGTGACAGCGGAACCGACAGCACGTAAAAGGGGATCGGGCCGATCCTCGACTTGC
256 GACCGAGGGTTGTGGCAGCGGGACCGACAGCACGTAGAGGGGGATCGGG-CGATCCCCGACTTGC
* * * * *
16092880 GCATTATGCCTCTCTGGCAGGCTTAGCGCCTGAACGCTCATTTCGTGGGTTGACTTAGGCATACG
320 GCATTATGCCTCTC-CGCTGGCTCAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* *** * *
16092945 AAGTTCATTCCCAGTCTAAGATCAAACTGGACCGAGGGTTACGGTAGTAGGATCGACAGTATGCA
384 -AGTTCATTCCCAGTCTAAGATCAAACTGGACCAAGGGTTACCACAGCAGGATCGACAGCATGCA
** * *
16093010 GGGGGGACCGATCGATCCCCGACTTGCACATTCTGCCTCTCTGGCCGACTGAGTGCCCGTACGCT
448 GGGGGGACCGATCGATCCCCGACTTGCACATTCTGCCTCTCTAACCGACTGAGCGCCCGAACGCT
* * * *
16093075 CGTTTCGAGGGTTGGCTTAGCCATGCGAAGTTCAATCCATGTCTAAGCTTATGGAGTTCATTCCC
513 CGTTTCGAGGGTTGGCTTAGCCATACGAAGTCCAATCCATGTCTAAGCATACGGAGTTCATTCCC
** * * * * **
16093140 AATCTAAGATTGGACCGGACCGAGGGTTGTGCCAGCAGCTAAGCAGTAGGATCGCAGCATGTAGG
578 AATCTAAGATCAGACCGGACAGAGGGTTGCGACAGCAGCTAAGCAGCAGGATCGCAGCACATAGG
* * * * * * *
16093205 ATGACCAGGGGCCCTGGCTTGCCATTCGCCTCT
643 AGGACCACGAGCCCCGACTTACCATTCACCTCT
* * *
16093238 TTTG---GCCGCGATGCTCGTTTCGTGGGTTGACTTA-GCATACGGAGTATCATCCCCACTCTAA
1 GTTGAACGCCGC-ATGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGT-TCATCCCCAGTCTAA
** * * *
16093299 GCATACGGAGTCATT-CCAGTCTAAATTAAGATCGGACCGAGGGTATGCGATTGC-CTAGGATCG
64 GCATACGGAGTCATTCCCAGTCTAAA-TCGGATCAGACCGAGGGT-T--G-TGGCAATAGGATCG
* * * * * * * * * **
16093362 ACAG-ACATTAGAGGGGACCGGGTTCAATTCC-CCGCTTACACATTCTGCCATTTTTGACCGGTT
124 ACAGCACGTAAG-GGGGATCGGG-CCGA-TCCTCGGCTTGCGCATTCTGCC-TCTCCGACCGGTT
* * *
16093425 GAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC
185 GAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC
* * * * * *
16093490 TAGCCGGACCGAGGGTTATGGCAGCGGGACTGACAGTACGCAGAGGGTGATCGGGTCGATCCCCG
250 TAGCTGGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGTAGAGGGGGATCGGG-CGATCCCCG
* * * *
16093555 GCTTGCGCATTATGCCTCTTCGGTCGGCTCAGCGCCCGAACGCTCGTTTCATGGGTTGACTTAGG
314 ACTTGCGCATTATGCCTCTCCGCT-GGCTCAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGG
* * * *
16093620 CATACAGAGTTCATTCCTAGTCTAAGATCAGA-TCGGACCAAGGGTTGCCACAGCAGGATCGATA
378 CATAC-GAGTTCATTCCCAGTCTAAGATCAAACT-GGACCAAGGGTTACCACAGCAGGATCGACA
* * * *
16093684 GCATGCAGGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCTAATCGGCTGAGCGCC
441 GCATGCAGGGGGGACC-GATCGATCCCCGACTTGCACATTCTGCCTCTCTAACCGACTGAGCGCC
* * * *
16093749 CGAACGCTCGTTTCGTGGGTTGGCTTAGGCATAC-AGGGTCCATTCCATGTCTAAGCATACGGAG
505 CGAACGCTCGTTTCGAGGGTTGGCTTAGCCATACGA-AGTCCAATCCATGTCTAAGCATACGGAG
* * *
16093813 TTCATTCCCAATCTAAGATCAGATCGGATAGAGGGTTGCGACAGCAAGGC-CAGCAGCAGGATCG
569 TTCATTCCCAATCTAAGATCAGACCGGACAGAGGGTTGCGACAGC-A-GCTAAGCAGCAGGATCG
* *
16093877 ACAGCACATAGGGGGGACCAATCGATCCCCGACTTACGCATTCTACCTCT
632 -CAGCACATA-GGAGGACC-A-CGAGCCCCGACTTAC-CATTC-ACCTCT
16093927 CGGCCAGTTGAACGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAG
1 ------GTTGAACG-CCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAG
* **
16093992 TCTAAGCATACGGAGTCCATTCCCAGTCTAAGATCGGATCAAACAAAGGGTTGTGGCAATAGGAT
59 TCTAAGCATACGGAGT-CATTCCCAGTCTAA-ATCGGATCAGACCGAGGGTTGTGGCAATAGGAT
* * * *
16094057 CGACAGCACGTAAGGGGGATCGAGCCGATCCTCGGCTTGTGCATTCTGCCTCTCCGATCGGCTGA
122 CGACAGCACGTAAGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACCGGTTGA
* *
16094122 GCGCCTGCACGTCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTA
187 GCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTA
* * ** * *
16094187 GCTGGGCTGAGGGTTGTGGCAGCGGGACCGGTAGCACTTAGAGGGGGACCGGGCAGATCCCCGAC
252 GCTGGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGTAGAGGGGGATCGGGC-GATCCCCGAC
* * * * * *
16094252 TTACGCATTCTGCCTCTCCGACTGGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCA
316 TTGCGCATTATGCCTCTCCG-CTGGCTCAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCA
16094317 TACGGAGTTCATTCC
380 TAC-GAGTTCATTCC
16094332 ATGTTTAAGC
Statistics
Matches: 889, Mismatches: 160, Indels: 76
0.79 0.14 0.07
Matches are distributed among these distances:
675 1 0.00
676 20 0.02
677 20 0.02
678 50 0.06
679 20 0.02
680 17 0.02
681 248 0.28
682 133 0.15
683 13 0.01
684 9 0.01
685 6 0.01
686 1 0.00
687 9 0.01
688 5 0.01
689 5 0.01
694 1 0.00
695 194 0.22
696 20 0.02
697 21 0.02
698 55 0.06
699 19 0.02
700 21 0.02
701 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (675 bp):
GTTGAACGCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGC
ATACGGAGTCATTCCCAGTCTAAATCGGATCAGACCGAGGGTTGTGGCAATAGGATCGACAGCAC
GTAAGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGACCGGTTGAGCGCCCGCA
CGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCTGGACCG
AGGGTTGTGGCAGCGGGACCGACAGCACGTAGAGGGGGATCGGGCGATCCCCGACTTGCGCATTA
TGCCTCTCCGCTGGCTCAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGAGTTCAT
TCCCAGTCTAAGATCAAACTGGACCAAGGGTTACCACAGCAGGATCGACAGCATGCAGGGGGGAC
CGATCGATCCCCGACTTGCACATTCTGCCTCTCTAACCGACTGAGCGCCCGAACGCTCGTTTCGA
GGGTTGGCTTAGCCATACGAAGTCCAATCCATGTCTAAGCATACGGAGTTCATTCCCAATCTAAG
ATCAGACCGGACAGAGGGTTGCGACAGCAGCTAAGCAGCAGGATCGCAGCACATAGGAGGACCAC
GAGCCCCGACTTACCATTCACCTCT
Found at i:16095067 original size:26 final size:26
Alignment explanation
Indices: 16095037--16095089 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16095027 GTTGACTTAG
*
16095037 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
16095063 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16095089 G
1 G
16095090 ATCAGATCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16096642 original size:26 final size:26
Alignment explanation
Indices: 16096612--16096664 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
16096602 GTAGGCTTAG
16096612 GCATAC-AGAGTTCATT-CCATGTCTAA
1 GCATACGA-AGTTCATTCCCA-GTCTAA
16096638 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16096664 G
1 G
16096665 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16096707 original size:12 final size:12
Alignment explanation
Indices: 16096690--16096715 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
16096680 AGGTTGTAGT
16096690 AGTAGGACCAGC
1 AGTAGGACCAGC
16096702 AGTAGGACCAGC
1 AGTAGGACCAGC
16096714 AG
1 AG
16096716 CATGCAGGGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.35, T:0.08
Consensus pattern (12 bp):
AGTAGGACCAGC
Found at i:16097173 original size:26 final size:26
Alignment explanation
Indices: 16097144--16097210 Score: 98
Period size: 26 Copynumber: 2.6 Consensus size: 26
16097134 GTTAACTTAG
* *
16097144 GCATACGGTGTTTATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
*
16097170 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
*
16097196 GCATACGAAGTTCAT
1 GCATACGGAGTTCAT
16097211 TCTTGAACCA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 37 1.00
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:16097876 original size:26 final size:26
Alignment explanation
Indices: 16097847--16097899 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16097837 GTTGACTTAG
16097847 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
16097873 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16097899 G
1 G
16097900 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16099264 original size:25 final size:26
Alignment explanation
Indices: 16099229--16099280 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
16099219 GTTGACTTAG
*
16099229 GCATACAGAGTTCAT-CCCAGTCTAA
1 GCATACAGAGTTCATACCCAATCTAA
*
16099254 GCATACGGAGTTCATACCCAATCTAA
1 GCATACAGAGTTCATACCCAATCTAA
16099280 G
1 G
16099281 ATCGGACTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 14 0.58
26 10 0.42
ACGTcount: A:0.33, C:0.27, G:0.17, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCATACCCAATCTAA
Found at i:16099631 original size:159 final size:161
Alignment explanation
Indices: 16099327--16099915 Score: 513
Period size: 159 Copynumber: 3.7 Consensus size: 161
16099317 CAACACACAG
** * * *
16099327 GGGGGACT-GGGTCGATCCCCAACTTATGCATTCTGCCCCTCCGA-CTGACTGAGCGCCTGCACG
1 GGGGGACTAGGGTCGATCCCCGGCTTATGCATTCTGCCTCTCCGATCAGACTGAGCGCCCGCACG
* * * ** ** * *
16099390 CCCATTTTATGGGTTGGCTTAGGCATAGGGAGTTCATTCCAAGTCTAAATAGTAGCTGGATCGAG
66 CCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCGGACCGAG
* * *
16099455 GGTTGTA-GCAGCAGGACCGGTGGCACGTAGA
131 GGTTG-AGGTAGCAGGACCGGTAGCACGCAGA
* * * *
16099486 GGGGGA-TAGGGTCGATCCCCGGCTTATGCATTCTACCTTTTCGATC-GACTGAGTGCCCGCACG
1 GGGGGACTAGGGTCGATCCCCGGCTTATGCATTCTGCCTCTCCGATCAGACTGAGCGCCCGCACG
* * *
16099549 CCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCCGCCGGACCGAG
66 CCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCGGACCGAG
* * * *
16099614 AGTTGAGGTAGCGGGACCGGCAGCACACAGA
131 GGTTGAGGTAGCAGGACCGGTAGCACGCAGA
* * * * * * * * * *
16099645 GGGGGACGAGGCT-GATCCCTGGCTTGTGCATTATGCCTCTCCAACCAGA-TCAGCGCCTGAACG
1 GGGGGACTAGGGTCGATCCCCGGCTTATGCATTCTGCCTCTCCGATCAGACTGAGCGCCCGCACG
* * ** * * * * *
16099708 CTCGTTTTGTGGGATGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACTG
66 CCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCAG-CCGGACCG
* * *
16099771 AGGGTTGCGGTAGCAGGATCGATAGCACGCAG-
129 AGGGTTGAGGTAGCAGGACCGGTAGCACGCAGA
* * * * * *
16099803 GGGGGA-TCGGGCCGGTCCCCGGCTTATGCATTCTG-CTCTCC-AGTC-GGCTGAGCACCCGTAC
1 GGGGGACTAGGGTCGATCCCCGGCTTATGCATTCTGCCTCTCCGA-TCAGACTGAGCGCCCGCAC
* * *
16099864 GCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGCA
65 GCCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
16099916 TACAGAGTTC
Statistics
Matches: 341, Mismatches: 77, Indels: 25
0.77 0.17 0.06
Matches are distributed among these distances:
156 5 0.01
157 59 0.17
158 29 0.09
159 238 0.70
160 10 0.03
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.24
Consensus pattern (161 bp):
GGGGGACTAGGGTCGATCCCCGGCTTATGCATTCTGCCTCTCCGATCAGACTGAGCGCCCGCACG
CCCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCGGACCGAG
GGTTGAGGTAGCAGGACCGGTAGCACGCAGA
Found at i:16099916 original size:26 final size:26
Alignment explanation
Indices: 16099887--16099939 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16099877 GTTGGCTTAG
* *
16099887 GCATACGGAGTTTATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCGA-GTCTAA
16099913 GCATACAGAGTTCATTCCGAGTCTAA
1 GCATACAGAGTTCATTCCGAGTCTAA
16099939 G
1 G
16099940 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCGAGTCTAA
Found at i:16100134 original size:26 final size:26
Alignment explanation
Indices: 16100084--16100134 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
16100074 GTTGACTTAG
* *
16100084 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGAAGTTCATCCCTAATCTAA
16100110 GCATACGAAGTTCATTCCC-AATCTA
1 GCATACGAAGTTCA-TCCCTAATCTA
16100135 TGATAGGACC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCTAATCTAA
Found at i:16100475 original size:26 final size:26
Alignment explanation
Indices: 16100426--16100478 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16100416 GTTGGCTTAG
*
16100426 GCATACGGAGTTCATTTCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
16100452 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
16100478 G
1 G
16100479 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:16101494 original size:159 final size:160
Alignment explanation
Indices: 16101174--16102151 Score: 584
Period size: 159 Copynumber: 6.2 Consensus size: 160
16101164 CGCATTCTAA
* * * * * *
16101174 GCATACGGCGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTAC-GACAGTAGGATC-GG
1 GCATACGGAGTTCATTCCCAGTCTAAGACCAGACCAGATCGAGGGTT-CTGACAGCAAGATCAGG
* ** * * * * * * * * * *
16101237 TAGCACGTAAGAGGGACCGGG-TCGATTCTCGGCTTGCGCATTCTACCTCTCCGAT-CGACTGAG
65 CAGCACACAGGGGGGACCGGGCT-AATCCCCAGCTTGCGCATTATGCCTCTCCGATCCGGCTCAG
* * * *
16101300 TGCCCGTACGCCCATTTCATGGGTTGGCTTAG
129 CGCCCGAACGCTCGTTTCATGGGTTGGCTTAG
* * * * * *
16101332 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-TCGGATCGAGGGTTACT-ACAGTATGA-CA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ACCAGACCAGATCGAGGGTT-CTGACAGCAAGATCA
* *
16101393 GGCAGCACGCAGAGGGGGACCGGGCTAATCCCCAGCTTACGCATTATGCCTCTCC-ATCCGGCTC
63 GGCAGCACACAG-GGGGGACCGGGCTAATCCCCAGCTTGCGCATTATGCCTCTCCGATCCGGCTC
* **
16101457 AGCGCCCGAACTCTCGTTTCATGATTTGGCTTAG
127 AGCGCCCGAACGCTCGTTTCATGGGTTGGCTTAG
* * * * *
16101491 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTAC-GATAGCAAGATC-GA
1 GCATACGGAGTTCATTCCCAGTCTAAGACCAGACCAGATCGAGGGTT-CTGACAGCAAGATCAGG
* * * * * ** ** * * *
16101554 CAACACGCAGGGGGGATCGAG-TCAGTCTTCAATTTGCGCATTTTGCCTCTCC-AACCGGCTGAG
65 CAGCACACAGGGGGGACCGGGCT-AATCCCCAGCTTGCGCATTATGCCTCTCCGATCCGGCTCAG
* * *
16101617 CGGCCGCACGCTTGTTTCATGGGTTGGCTTAG
129 CGCCCGAACGCTCGTTTCATGGGTTGGCTTAG
* * * * *
16101649 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CTGAGGGTTGTGGCAGCAGGATTA-G
1 GCATACGGAGTTCATTCCCAGTCTAAGACCAGACCAGATC-GAGGGTTCTGACAGCAAGATCAGG
* * * * * * * *
16101712 TAGCACACAGGGGGGACCAGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGA-CTGGTTGAGC
65 CAGCACACAGGGGGGACCGGGCTAATCCCCAGCTTGCGCATTATGCCTCTCCGATCCGGCTCAGC
* *
16101776 ACCCGCACGC-CTGTTTCATGGGTTGGCTTAG
130 GCCCGAACGCTC-GTTTCATGGGTTGGCTTAG
* * * * * *
16101807 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGATCGAGGATTGTGGCAGCAAGA-CCG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ACCAGACCAGATCGAGGGTTCTGACAGCAAGATCAG
* * * * * *
16101869 GCAGCATACAGAGGGGGACCGGGTTGATCTCCAGCTTGTGCATTATGCCTCTCCGGT-CGGCTCA
64 GCAGCACACAG-GGGGGACCGGGCTAATCCCCAGCTTGCGCATTATGCCTCTCCGATCCGGCTCA
* * * *
16101933 GTGCCCGAATGCTCGTTTCGTGGGTTGACTTAG
128 GCGCCCGAACGCTCGTTTCATGGGTTGGCTTAG
** * * * * * * * ** * * *
16101966 GCATATAGAGTTAATTCCCAGTCTAAGATC-GAATCGGACCAAGGGTTGTGGTAGTAGGATC-GA
1 GCATACGGAGTTCATTCCCAGTCTAAGACCAG-ACCAGATCGAGGGTTCTGACAGCAAGATCAGG
** * * * * * * * * * *
16102029 CAGCATGCAGGGGGGGATCGAGCCAGTCCCGAGCTTGCACATTCTGCCTCTACGAT-TGGCTGAG
65 CAGCACACA-GGGGGGACCGGGCTAATCCCCAGCTTGCGCATTATGCCTCTCCGATCCGGCTCAG
* * * * *
16102093 CTCCCGCACGCTCATTTCGTGGATTGGCTTAG
129 CGCCCGAACGCTCGTTTCATGGGTTGGCTTAG
*
16102125 GCATACAGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
16102152 CATACGGAGT
Statistics
Matches: 645, Mismatches: 144, Indels: 61
0.76 0.17 0.07
Matches are distributed among these distances:
157 10 0.02
158 304 0.47
159 320 0.50
160 11 0.02
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (160 bp):
GCATACGGAGTTCATTCCCAGTCTAAGACCAGACCAGATCGAGGGTTCTGACAGCAAGATCAGGC
AGCACACAGGGGGGACCGGGCTAATCCCCAGCTTGCGCATTATGCCTCTCCGATCCGGCTCAGCG
CCCGAACGCTCGTTTCATGGGTTGGCTTAG
Found at i:16101653 original size:158 final size:158
Alignment explanation
Indices: 16101174--16101995 Score: 496
Period size: 158 Copynumber: 5.2 Consensus size: 158
16101164 CGCATTCTAA
* * * * * * *
16101174 GCATACGGCGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGACAGTAGGATCG-GT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAAGAT-GAGC
* ** * * * * * ** * * * * * *
16101238 AGCACGTAAGAGGGACCGGGTC-GATTCTCGGCTTGCGCATTCTACCTCTCCGATCGACTGAGTG
65 AACACACAGGGGGGACCAGG-CAGATCCCCAACTTGCGCATTATGCCTCTCCAACCGGCTGAGCG
* ***
16101302 CCCGTACGCCCATTTCATGGGTTGGCTTAG
129 CCCGCACGCTTGTTTCATGGGTTGGCTTAG
* ** * * * * * * *
16101332 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-TCGGATCGAGGGTTACTACAGTATGA-CAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTACGACAGCAAGATGA-
* * * * * * *
16101394 GCAGCACGCAGAGGGGGACCGGGCTA-ATCCCCAGCTTACGCATTATGCCTCTCCATCCGGCTCA
63 GCAACACACAG-GGGGGACCAGGC-AGATCCCCAACTTGCGCATTATGCCTCTCCAACCGGCTGA
* * * **
16101458 GCGCCCGAACTCTCGTTTCATGATTTGGCTTAG
126 GCGCCCGCACGCTTGTTTCATGGGTTGGCTTAG
* *
16101491 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGATAGCAAGATCGA-C
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAAGAT-GAGC
* * * ** * *
16101555 AACACGCAGGGGGGATCGAGTCAG-TCTTCAATTTGCGCATTTTGCCTCTCCAACCGGCTGAGCG
65 AACACACAGGGGGGA-CCAGGCAGATCCCCAACTTGCGCATTATGCCTCTCCAACCGGCTGAGCG
*
16101619 GCCGCACGCTTGTTTCATGGGTTGGCTTAG
129 CCCGCACGCTTGTTTCATGGGTTGGCTTAG
* ** * * * *
16101649 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATTAGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAAGATGAGCA
* * ** * * * * *
16101714 GCACACAGGGGGGACCAGGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGGTTGAGCACC
66 ACACACAGGGGGGACCAGGCAGATCCCCAACTTGCGCATTATGCCTCTCCAACCGGCTGAGCGCC
*
16101779 CGCACGCCTGTTTCATGGGTTGGCTTAG
131 CGCACGCTTGTTTCATGGGTTGGCTTAG
* ** * * ** * *
16101807 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGATCGAGGATTGTGGCAGCAAGACCG-
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACCGAGGGTTACGACAGCAAGA-TGA
* * * ** * * * *** *
16101869 GCAGCATACAGAGGGGGACCGGGTTGATCTCCAGCTTGTGCATTATGCCTCTCCGGTCGGCTCAG
63 GCAACACACAG-GGGGGACCAGGCAGATCCCCAACTTGCGCATTATGCCTCTCCAACCGGCTGAG
* * * * * *
16101934 TGCCCGAATGCTCGTTTCGTGGGTTGACTTAG
127 CGCCCGCACGCTTGTTTCATGGGTTGGCTTAG
** *
16101966 GCATATAGAGTTAATTCCCAGTCTAAGATC
1 GCATACGGAGTTCATTCCCAGTCTAAGATC
16101996 GAATCGGACC
Statistics
Matches: 524, Mismatches: 120, Indels: 40
0.77 0.18 0.06
Matches are distributed among these distances:
157 12 0.02
158 297 0.57
159 208 0.40
160 6 0.01
161 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAAGATGAGCA
ACACACAGGGGGGACCAGGCAGATCCCCAACTTGCGCATTATGCCTCTCCAACCGGCTGAGCGCC
CGCACGCTTGTTTCATGGGTTGGCTTAG
Found at i:16102161 original size:26 final size:26
Alignment explanation
Indices: 16102125--16102177 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16102115 ATTGGCTTAG
*
16102125 GCATACAGAGTTCA-TTCCATGTCTAA
1 GCATACAGAGTTCACTCCCA-GTCTAA
*
16102151 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACAGAGTTCACTCCCAGTCTAA
16102177 G
1 G
16102178 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCACTCCCAGTCTAA
Found at i:16102610 original size:11 final size:13
Alignment explanation
Indices: 16102585--16102616 Score: 50
Period size: 11 Copynumber: 2.6 Consensus size: 13
16102575 ATTTGGGGAC
16102585 AAAAATCTTTCTA
1 AAAAATCTTTCTA
16102598 AAAAAT-TTT-TA
1 AAAAATCTTTCTA
16102609 AAAAATCT
1 AAAAATCT
16102617 CGAACGACAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 8 0.44
12 4 0.22
13 6 0.33
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.38
Consensus pattern (13 bp):
AAAAATCTTTCTA
Found at i:16103540 original size:184 final size:184
Alignment explanation
Indices: 16103199--16103568 Score: 431
Period size: 184 Copynumber: 2.0 Consensus size: 184
16103189 GTTGACTTAG
* *
16103199 GCATACAAAGTTCATTCCCAATCTAAGATCTAACCAGACTGAAGGTTACGATAGCAAGATCGACA
1 GCATACAAAGTTCATTCCCAATCTAAGATCAAACCAGACCGAAGGTTACGATAGCAAGATCGACA
* * * ** * * * * *
16103264 GCATGTAGAAAGGGATCGGTCGGTCCCTGGTTTACGCATTCTACCTCTCTGACTGGCTGAGCGCC
66 GCACGCAGAAAGGGATCGGTCGATCCCCAGCTTACGCATTCTACCCCTCCGACCGGCTGAGCACC
* * *
16103329 TGTACGCTCGTTTCATGGGTAGGCTTAGGCATATGG-AGTTCATCCCCA-GTCTAA
131 CGGACGCCCGTTTCATGGGTAGGCTTAGGCATA-GGAAGTTCAT-CCCATGTCTAA
* * * *
16103383 GCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAAGGTTACGTTAGCAGGATCGACA
1 GCATACAAAGTTCATTCCCAATCTAAGATCAAACCAGACCGAAGGTTACGATAGCAAGATCGACA
* ** * * *
16103448 GTACGCAG-GGGGGATCGAGTCGATCCCCAGCTTGCGCATTCTACCCCTCCGGCCGGTTGAGCAC
66 GCACGCAGAAAGGGATCG-GTCGATCCCCAGCTTACGCATTCTACCCCTCCGACCGGCTGAGCAC
* * * *
16103512 CCGGACGCCCTTTTCGTGGGTTGGCTTAGGCATAGGAAGTTCATTCCATGTCTAA
130 CCGGACGCCCGTTTCATGGGTAGGCTTAGGCATAGGAAGTTCATCCCATGTCTAA
16103567 GC
1 GC
16103569 CCCAGCCAGA
Statistics
Matches: 154, Mismatches: 29, Indels: 6
0.81 0.15 0.03
Matches are distributed among these distances:
183 12 0.08
184 142 0.92
ACGTcount: A:0.24, C:0.26, G:0.25, T:0.24
Consensus pattern (184 bp):
GCATACAAAGTTCATTCCCAATCTAAGATCAAACCAGACCGAAGGTTACGATAGCAAGATCGACA
GCACGCAGAAAGGGATCGGTCGATCCCCAGCTTACGCATTCTACCCCTCCGACCGGCTGAGCACC
CGGACGCCCGTTTCATGGGTAGGCTTAGGCATAGGAAGTTCATCCCATGTCTAA
Found at i:16104028 original size:26 final size:26
Alignment explanation
Indices: 16103999--16104051 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16103989 CCGATCCAAT
16103999 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
16104025 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
16104051 C
1 C
16104052 CTAAGTCAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:16104238 original size:26 final size:25
Alignment explanation
Indices: 16104209--16104260 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 25
16104199 TCAGTCCGAT
16104209 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACT-CGTATG
*
16104235 CTTATACATGGAATGAACTCGTATG
1 CTTAGACATGGAATGAACTCGTATG
16104260 C
1 C
16104261 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 7 0.29
26 16 0.67
27 1 0.04
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (25 bp):
CTTAGACATGGAATGAACTCGTATG
Found at i:16105195 original size:696 final size:696
Alignment explanation
Indices: 16104213--16105498 Score: 1552
Period size: 696 Copynumber: 1.8 Consensus size: 696
16104203 TCCGATCTTA
* *
16104213 GACTAGGAATGAACTCCGTATGCTTATACATGGAATGAACTCGTATGCCTAAGCCAACCCACGAA
1 GACTAGGAATGAACTCCGTATGCTTAGACATGGAATAAACTCGTATGCCTAAGCCAACCCACGAA
* * * * * *
16104278 ACGAGCGTGCGGGCGCTCAGTCGATCGGAGAGGCAAAATGCGTAAATCGGGGATCGACCTGACCC
66 ACGAGCGTGCAGGCGCTCAGACGATCGGAGAGGCAAAATACATAAATCGAGGATCGACATGACCC
* * * *
16104343 CCCCTGCGTGCTATCGATCCTACTACTGCAACCCTCAGTCTGATCCGATCTTAGACTAGGAATGA
131 CCCCTACATACTATCAATCCTACTACTGCAACCCTCAGTCTGATCCGATCTTAGACTAGGAATGA
* * * * * *
16104408 ACTCTGGATGCCTAAGTTAACCCACGAAATGAGCGTTCGTACGCTGGGCCAGCCAGAAAGGCATA
196 ACTCCGGATGCCTAAGTCAACCCACAAAATGAGCGTTCGGACACTGGACCAGCCAGAAAGGCATA
** ** * *
16104473 ATGCGTAAGTCAGAGATCGGCCCGATCCCCCTCTGTGTGCTATCGATCCCGTTGCCACAACCCTC
261 ATGCACAAGTCAGAGATCAACCCGATCCCCCTCTGTGTGCCATCGATCCCGCTGCCACAACCCTC
* * *
16104538 GGCCTGGTTGGGGCTTAGACATGGAATGAAGT-CCCTATGCCTAAGCCAACCCACAAAACGGGCG
326 GACCTGGCTGGGGCTTAGACATGGAATGAA-TCCCCTATGCCTAAGCAAACCCACAAAACGGGCG
* * * * * * ** * *
16104602 TACAGGCACTCAGCTGGCTGGAGAGGCAGAATGCGTAAGCTGAGGATCGACCCAGTCCCCTATGC
390 TACAGGCACTCAACCGACCGAAGAGGCAGAATGCGCAAGCCAAGGATCAACCCAGTCCCCCATGC
* **
16104667 GTGCTGTCGATCCTGCTGTCACAACCCTC-GATCCGA-CTTGATCTTACACTGGGAATGAACTCC
455 GTGCTGTCGATCCTGCTGCCACAACCCTCAG-TCCGATC-CAATCTTACACTGGGAATGAACTCC
* * * * * *
16104730 GTATGTTTCGATTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTATGGGTGC
518 GTATGCTTAGACTGGGGATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGC
16104795 TCAACCAGCCGGAGAGGCAGAATGCACAAATCGAGGATCAACCCAGTCCCTCCAGCATGCTATCG
583 TCAACCAGCCGGAGAGGCAGAATGCACAAATCGAGGATCAACCCAGTCCCTCCAGCATGCTATCG
16104860 ATCCTGCTGCTGGTCATACTATCGTAACCCTCAGTCTGGTCTAATCATT
648 ATCCTGCTGCTGGTCATACTATCGTAACCCTCAGTCTGGTCTAATCATT
* * * *
16104909 GACT-GGAATGAACTTCGTATGGTTAGACATGGAATAAACTCCGTCTGCCTAAGCCAACCCATGA
1 GACTAGGAATGAACTCCGTATGCTTAGACATGGAATAAACT-CGTATGCCTAAGCCAACCCACGA
* *
16104973 AACGAGCGTGCAGGCGCTCA-ACAGATTGGAGAGGCAAAATACATAAGTCGAGGA-CAGGA-ATG
65 AACGAGCGTGCAGGCGCTCAGAC-GATCGGAGAGGCAAAATACATAAATCGAGGATC--GACATG
** * * * * * *
16105035 GTCCCCCCTACATACTGTCAATCCTGCTA-TCGCAACCCTCGGT-TCGGTCCTATCTTAGACTGG
127 ACCCCCCCTACATACTATCAATCCTACTACT-GCAACCCTCAGTCT-GATCCGATCTTAGACTAG
* * * * *
16105098 GAATGAACTCCGTATGCCTAAGTCAACCCATAAAATGAGCGTTCGGGCAC-GGAACC-GATCGGA
190 GAATGAACTCCGGATGCCTAAGTCAACCCACAAAATGAGCGTTCGGACACTGG-ACCAG-CCAGA
* * * * *
16105161 GAGGCATAATGCACAAGTC-GAGGATTAACCCGATCCCCCTTTGTGTGCCATCGGTCCTGCTGCC
253 AAGGCATAATGCACAAGTCAGA-GATCAACCCGATCCCCCTCTGTGTGCCATCGATCCCGCTGCC
* * * * * **
16105225 ACAGCCCTCGATCTGGCTGTGGTTTAGACATGGAATGAATCCCCTATGCCTTAGCAAACCCATGA
317 ACAACCCTCGACCTGGCTGGGGCTTAGACATGGAATGAATCCCCTATGCCTAAGCAAACCCACAA
*** ** *
16105290 AACGGGCGTGTGGGTGCTCAACCGACCGAAGAGGCAGAATGCGCAAGCCAAGGATCAACTCAGTC
382 AACGGGCGTACAGGCACTCAACCGACCGAAGAGGCAGAATGCGCAAGCCAAGGATCAACCCAGTC
* * * * *
16105355 CCCCCTGCGTGTTGTCGATCTTGGTGCCACAACCCTCAGTCCGATCCAATCTTAGACTGGGAATG
447 CCCCATGCGTGCTGTCGATCCTGCTGCCACAACCCTCAGTCCGATCCAATCTTACACTGGGAATG
* * *
16105420 AACTCTGTATGCTTAGACTGGGGATAAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGC
512 AACTCCGTATGCTTAGACTGGGGATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTAC
*
16105485 GGGTGCTCAGCCAG
577 GGGTGCTCAACCAG
16105499 TCAAAGAGGC
Statistics
Matches: 486, Mismatches: 92, Indels: 24
0.81 0.15 0.04
Matches are distributed among these distances:
695 42 0.09
696 440 0.91
697 4 0.01
ACGTcount: A:0.26, C:0.28, G:0.25, T:0.21
Consensus pattern (696 bp):
GACTAGGAATGAACTCCGTATGCTTAGACATGGAATAAACTCGTATGCCTAAGCCAACCCACGAA
ACGAGCGTGCAGGCGCTCAGACGATCGGAGAGGCAAAATACATAAATCGAGGATCGACATGACCC
CCCCTACATACTATCAATCCTACTACTGCAACCCTCAGTCTGATCCGATCTTAGACTAGGAATGA
ACTCCGGATGCCTAAGTCAACCCACAAAATGAGCGTTCGGACACTGGACCAGCCAGAAAGGCATA
ATGCACAAGTCAGAGATCAACCCGATCCCCCTCTGTGTGCCATCGATCCCGCTGCCACAACCCTC
GACCTGGCTGGGGCTTAGACATGGAATGAATCCCCTATGCCTAAGCAAACCCACAAAACGGGCGT
ACAGGCACTCAACCGACCGAAGAGGCAGAATGCGCAAGCCAAGGATCAACCCAGTCCCCCATGCG
TGCTGTCGATCCTGCTGCCACAACCCTCAGTCCGATCCAATCTTACACTGGGAATGAACTCCGTA
TGCTTAGACTGGGGATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCA
ACCAGCCGGAGAGGCAGAATGCACAAATCGAGGATCAACCCAGTCCCTCCAGCATGCTATCGATC
CTGCTGCTGGTCATACTATCGTAACCCTCAGTCTGGTCTAATCATT
Found at i:16105441 original size:26 final size:26
Alignment explanation
Indices: 16105405--16105457 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16105395 CCGATCCAAT
* *
16105405 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
16105431 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
16105457 C
1 C
16105458 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:16105833 original size:26 final size:26
Alignment explanation
Indices: 16105797--16105852 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
16105787 TTGGTCCGAT
* *
16105797 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16105823 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16105849 CTTA
1 CTTA
16105853 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16106448 original size:11 final size:11
Alignment explanation
Indices: 16106428--16106460 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
16106418 CGGTTAGTCT
16106428 CTCTGGCGATG
1 CTCTGGCGATG
*
16106439 CTCTGACGATG
1 CTCTGGCGATG
16106450 CTCTGGCGATG
1 CTCTGGCGATG
16106461 GTACCTCGGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.12, C:0.27, G:0.33, T:0.27
Consensus pattern (11 bp):
CTCTGGCGATG
Found at i:16106568 original size:26 final size:26
Alignment explanation
Indices: 16106530--16106582 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16106520 GGCTCAAACT
**
16106530 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACAAGGAATGAACTTC-GTATG
16106556 CTTAGACAAGGAATGAACTTCGTATG
1 CTTAGACAAGGAATGAACTTCGTATG
16106582 C
1 C
16106583 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTTCGTATG
Found at i:16107570 original size:158 final size:158
Alignment explanation
Indices: 16107067--16107561 Score: 496
Period size: 158 Copynumber: 3.1 Consensus size: 158
16107057 GGTGCGGTTC
*
16107067 GATCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCT
1 GATCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCT
* * * * * * *
16107131 CAGCCAATCAGAGAGGTAGAATGCGCAAGCTGGGGA-AGGCCTGGTTCCCCCCTACATGCTGTCG
65 CAGCCGATCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTAG-TCCCCCCTGCGTGCTGTCG
* * * * *
16107195 ATCTTGCTGCCGTAACCCTCAATCTGGTCT
129 ATCCTGCTGCCGCAACCTTCAGTCTGATCT
* ** * * * *
16107225 GATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAATGAGCATTCGGGTGCTG
1 GATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCTC
* * ** * *
16107290 AGCCGGTCAGAGAGGCATAATGCGCTTG-CGGGGATCGACCTAGTCCCCCTCTGCGTGCTGTCGG
66 AGCCGATCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTAGTCCCCC-CTGCGTGCTGTCGA
** * * *
16107354 TCCCACTACCACAACCTTCAGTCTGAAT-G
130 TCCTGCTGCCGCAACCTTCAGTCTG-ATCT
** ** * * *
16107383 GGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGGGCT
1 GATCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCT
* ** * *
16107447 CAGCCGATCGGAGAGGCAGAATATGCAAGCCAGGGATCGGCCCAGTCCCCCCTGCGTGCTGTCGA
65 CAGCCGATCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTAGTCCCCCCTGCGTGCTGTCGA
* *
16107512 TCCTGCTGTCGCAACCTTCGGTCTGATCT
130 TCCTGCTGCCGCAACCTTCAGTCTGATCT
*
16107541 GATCTTAGGCTGGGAATGAAC
1 GATCTTAGACTGGGAATGAAC
16107562 ATCATATGCT
Statistics
Matches: 265, Mismatches: 64, Indels: 16
0.77 0.19 0.05
Matches are distributed among these distances:
157 15 0.06
158 230 0.87
159 20 0.08
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.21
Consensus pattern (158 bp):
GATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCTC
AGCCGATCAGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTAGTCCCCCCTGCGTGCTGTCGAT
CCTGCTGCCGCAACCTTCAGTCTGATCT
Found at i:16109325 original size:26 final size:26
Alignment explanation
Indices: 16109296--16109348 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16109286 CCGATCTGAT
*
16109296 CTTAGACTGGTAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
16109322 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16109348 C
1 C
16109349 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16109450 original size:184 final size:187
Alignment explanation
Indices: 16109138--16109652 Score: 527
Period size: 196 Copynumber: 2.7 Consensus size: 187
16109128 CTGGCAGGGC
* * * * *
16109138 CTTAGACATGGAATGAACTCCCTATGCCAAAGCCAACCCATGAAATGGGCGTCCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTGCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCTCAGT
* * ** *
16109203 CGATCGGAGAGGCAGAATGCGCAAGCCGGGGAACTACCCGGTCCCTCCAACGTGCTACCGATCCT
66 CG-TCGGAGAGGCAGAATGCGCAAGCCGGGGAACGACCCGGTCCCCCCTGCGTGCTGCCGATCCT
* * * *
16109268 GCTGC-C-A-C-AACCTTCAGTCCGATCTGATCTTAGACTGGTAATGAACTCCGTATG
130 GCTGCGCTACCGAACCCTCAATCCGATCTGATCTTAGACTGGGAATGAACTACGTATG
* * ** * *
16109322 CTTAGAC-TGGGGATGAACTTCGTATGCCTAAGTTAACCCATAAAATGAGCGTACGGGCGCTCAA
1 CTTAGACAT-GGAATGAACTGCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCTCAG
* * * * * *
16109386 CCTGTCGGAGAGGCAGAATGCGTAAGCCAGGGATCGGCCTGGTCCCCCCTGCGTGCTGCCGATCC
65 TC-GTCGGAGAGGCAGAATGCGCAAGCCGGGGAACGACCCGGTCCCCCCTGCGTGCTGCCGATCC
*
16109451 TGCTACTGGTCCTGCTACCGTAACCCTCAATCCGGTCTGATCTTAGACTGGGAATGAACTACGTA
129 TG---CT-G--C-GCTACCG-AACCCTCAATCCGATCTGATCTTAGACTGGGAATGAACTACGTA
16109516 TG
186 TG
* * * * *
16109518 CTTAGACATGGAATGAACTGCGTATGCCTAAGCCAACCCATGACACGAGCGTGCAGGTGCTCAGT
1 CTTAGACATGGAATGAACTGCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCTCAGT
* * * ** * * *
16109583 CAGTCAGAAAGGCAGAATGCGCAAGCCGGGGACCGACAGGGCCCCCCCTGTGTGCTGTCGATCCT
66 C-GTCGGAGAGGCAGAATGCGCAAGCCGGGGAACGACCCGGTCCCCCCTGCGTGCTGCCGATCCT
16109648 GCTGC
130 GCTGC
16109653 TTAGACTAGG
Statistics
Matches: 266, Mismatches: 50, Indels: 24
0.78 0.15 0.07
Matches are distributed among these distances:
183 1 0.00
184 106 0.40
185 1 0.00
187 2 0.01
188 1 0.00
190 2 0.01
192 2 0.01
193 3 0.01
194 1 0.00
196 146 0.55
197 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (187 bp):
CTTAGACATGGAATGAACTGCGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCTCAGT
CGTCGGAGAGGCAGAATGCGCAAGCCGGGGAACGACCCGGTCCCCCCTGCGTGCTGCCGATCCTG
CTGCGCTACCGAACCCTCAATCCGATCTGATCTTAGACTGGGAATGAACTACGTATG
Found at i:16109530 original size:26 final size:26
Alignment explanation
Indices: 16109492--16109544 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16109482 CCGGTCTGAT
16109492 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
*
16109518 CTTAGACAT-GGAATGAACTGCGTATG
1 CTTAGAC-TGGGAATGAACTACGTATG
16109544 C
1 C
16109545 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:16109763 original size:134 final size:135
Alignment explanation
Indices: 16109516--16109777 Score: 289
Period size: 134 Copynumber: 1.9 Consensus size: 135
16109506 GAACTACGTA
* * * *
16109516 TGCTTAGACATGGAATGAACTGCGTATGCCTAAGCCAACCCATGACACGAGCGTGCAGGTGCTCA
1 TGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCA
* * * * **
16109581 GTCAGTCAGAAAGGCAGAATGCGCAAGCCGGGGACCGACAGGGCCCCCC-CTGTGTGCTGTCGAT
66 GCCAGTCAGAAAGGCAGAATGCGCAAGCCGAGGACCGACACGACCCCCCTCTGCATGCTGTCGAT
16109645 CCTGC
131 CCTGC
* * * *
16109650 TGCTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTTCAGGCGCTG
1 TGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTC
* * * * * *
16109714 AGCC-GATCAGAGAGGCATAATGCGTAAGCCGAGGATC-ACCCCGATCCCCCTCTGCATGCTGTC
65 AGCCAG-TCAGAAAGGCAGAATGCGCAAGCCGAGGACCGA-CACGACCCCCCTCTGCATGCTGTC
16109777 G
128 G
16109778 GTCCCGCTAT
Statistics
Matches: 104, Mismatches: 20, Indels: 7
0.79 0.15 0.05
Matches are distributed among these distances:
133 3 0.03
134 90 0.87
135 11 0.11
ACGTcount: A:0.25, C:0.29, G:0.28, T:0.18
Consensus pattern (135 bp):
TGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCA
GCCAGTCAGAAAGGCAGAATGCGCAAGCCGAGGACCGACACGACCCCCCTCTGCATGCTGTCGAT
CCTGC
Found at i:16110010 original size:26 final size:26
Alignment explanation
Indices: 16109969--16110021 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16109959 CTGGTTCGAT
*
16109969 CTTAGACTAGGAATGAACTCCTTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
16109995 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16110021 C
1 C
16110022 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Done.