Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19866354
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 74000 characters in sequence are not A, C, G, or T
File 73 of 100
Found at i:16110667 original size:158 final size:159
Alignment explanation
Indices: 16110162--16110667 Score: 366
Period size: 159 Copynumber: 3.2 Consensus size: 159
16110152 GGTCTGGTCT
* * * * * *
16110162 GATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAACCTACGAAATGAGCGTACGGGTGCTC
1 GATCTTAGACTGGGTATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGCTGCTC
*** * * * * ** * *
16110227 AGCCGGTC-GAAAAGGCAGAATGTC-GAAGCTGGA-GATTGGTTCGATCCC-CTCCTGCGTGATA
66 AGCCAACCAG-AGAGGCAGAATG-CACAAG-TCGAGGATCGGCCCGATCCCACT-CTGCGTGCTG
* ** * * ** *
16110288 TCGATCCTACTACCATAACCCTCGGTTTGATCC-
127 CCGATCCCGCTGCCACAACCCTCGG-TCCAGCCA
* * * * * *
16110321 GATCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTTCGGGTGCTG
1 GATCTTAGACTGGGTATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGCTGCTC
* * * * * *
16110386 AGCCAACCGGAGGGGCATAATGCACAAGTCGGGGATCGGCCCGATCCCATTCTGCGTGCTGCCGG
66 AGCCAACCAGAGAGGCAGAATGCACAAGTCGAGGATCGGCCCGATCCCACTCTGCGTGCTGCCGA
*
16110451 TCCCGCTGCCACAACCCTCGGTCCAGCTA
131 TCCCGCTGCCACAACCCTCGGTCCAGCCA
** * *
16110480 GGGCTTAGACAT--GTAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCAGGCT-
1 GATCTTAGAC-TGGGT-ATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGC-GGCTG
* ** * * ** * * * *
16110542 CTCTGCCGGCCAGAGAGGTAGAATGCACAATTCGAGGATCGGGTCGGTCCC-CTCTGTGTGTTGT
63 CTCAGCCAACCAGAGAGGCAGAATGCACAAGTCGAGGATCGGCCCGATCCCACTCTGCGTGCTGC
* *
16110606 CGATCCTGCTGCCGCAACCCTCGGTCCAGTCCA
128 CGATCCCGCTGCCACAACCCTCGGTCCAG-CCA
16110639 -ATCTTAGACTGGGTATGAACTCCGTATGC
1 GATCTTAGACTGGGTATGAACTCCGTATGC
16110668 TTAGACTAGG
Statistics
Matches: 271, Mismatches: 65, Indels: 23
0.75 0.18 0.06
Matches are distributed among these distances:
157 1 0.00
158 63 0.23
159 201 0.74
160 6 0.02
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (159 bp):
GATCTTAGACTGGGTATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGCTGCTC
AGCCAACCAGAGAGGCAGAATGCACAAGTCGAGGATCGGCCCGATCCCACTCTGCGTGCTGCCGA
TCCCGCTGCCACAACCCTCGGTCCAGCCA
Found at i:16110682 original size:26 final size:26
Alignment explanation
Indices: 16110641--16110693 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16110631 CCAGTCCAAT
16110641 CTTAGACTGGGTATGAACTCCGTATG
1 CTTAGACTGGGTATGAACTCCGTATG
16110667 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGTATGAACTCCGTATG
16110693 C
1 C
16110694 CTAAGTCAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGTATGAACTCCGTATG
Found at i:16111733 original size:26 final size:26
Alignment explanation
Indices: 16111704--16111755 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16111694 CGATCTGATG
*
16111704 TTAGACTGGGAATGAATTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
16111730 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
16111756 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:16111938 original size:26 final size:25
Alignment explanation
Indices: 16111898--16111949 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
16111888 CTGGTTTGAT
16111898 CTTAGACGGGAATGAACTCCGTATG
1 CTTAGACGGGAATGAACTCCGTATG
* *
16111923 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGAC-GGGAATGAACTCCGTATG
16111949 C
1 C
16111950 CTAAGCTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (25 bp):
CTTAGACGGGAATGAACTCCGTATG
Found at i:16112317 original size:159 final size:155
Alignment explanation
Indices: 16111922--16112321 Score: 385
Period size: 159 Copynumber: 2.5 Consensus size: 155
16111912 AACTCCGTAT
* * * * *
16111922 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCTAACCCACAAAACGAATGTGCGGGCGCTCAG
1 GCTTAGATATGGAATGAACTCT-TATGCCTAAGCCAACCCACGAAA-GGACGTGCGGGCGCTCAG
* * ** *
16111987 CTGGTCAGAGAGGCAGAATGCGCAAGTCGAGACTGACCTGATCCCCTCTTGTGTGCTGTCAATCC
64 CTGGTCAGAGAGGCAGAATGCGCAAGTCAAGACTGACCGGATCCCCTCTTACGTGCTGCCAATCC
*
16112052 TACTACCACAACCCTCGGTCCGATCGA
129 TACTACCACAACCCTCGATCCGATCGA
* * * * * * *
16112079 TCTTAGAT-TGGAAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCACTGA
1 GCTTAGATATGG-AATGAAC-TCTTATGCCTAAGCCAACCCACGAAAGGA-CGTGCGGGCGCTCA
* * * * * * *
16112143 GCCT-GTCGGAGAGGCATAATGCGTATGTCAAAGATTGGCCCGGTTCCCCTC-TACGTGCTGCCA
63 G-CTGGTCAGAGAGGCAGAATGCGCAAGTC-AAGACT-GACCGGATCCCCTCTTACGTGCTGCCA
* * *
16112206 GT-CTCACTACCACAACCCTCGATCCGACTGGG
125 ATCCT-ACTACCACAACCCTCGATCCGA-TCGA
* *
16112238 GCTTAGATATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAATGGACATGCAGGCGCTCAG
1 GCTTAGATATGGAATGAACT-CTTATGCCTAAGCCAACCCACGAAA-GGACGTGCGGGCGCTCAG
*
16112303 CTGGCCAGAGAGGCAGAAT
64 CTGGTCAGAGAGGCAGAAT
16112322 ATGCAAGCTG
Statistics
Matches: 191, Mismatches: 40, Indels: 22
0.75 0.16 0.09
Matches are distributed among these distances:
156 4 0.02
157 67 0.35
158 42 0.22
159 73 0.38
160 5 0.03
ACGTcount: A:0.26, C:0.28, G:0.25, T:0.21
Consensus pattern (155 bp):
GCTTAGATATGGAATGAACTCTTATGCCTAAGCCAACCCACGAAAGGACGTGCGGGCGCTCAGCT
GGTCAGAGAGGCAGAATGCGCAAGTCAAGACTGACCGGATCCCCTCTTACGTGCTGCCAATCCTA
CTACCACAACCCTCGATCCGATCGA
Found at i:16112641 original size:26 final size:26
Alignment explanation
Indices: 16112612--16112663 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
16112602 ACGGTCCGAT
16112612 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGGATAAACTCCGTATG
*
16112638 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATAAACTCCGTATG
16112664 GCTAAGTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGGATAAACTCCGTATG
Found at i:16112773 original size:216 final size:216
Alignment explanation
Indices: 16112387--16112824 Score: 642
Period size: 216 Copynumber: 2.0 Consensus size: 216
16112377 TCCCTTAGTC
* * * **
16112387 CGGTTCGATCTTATACTGGGAATGAACTTTGTATGCTTAGACTGGGGATGAACTCCATATGCCTA
1 CGGTCCGATCTTAGACTGGGAATAAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTA
* * * * ** * *
16112452 AGTCAACTCACAAAACGAGCGTGTGGATGATCAGTCGACCCTAGAGGTAGGATGCGCAAGTCGGG
66 AGTCAACCCACAAAACGAGCGTGCGGACGATCAGCCGACCAGAGAGGCAGGATGCGCAAGCCGGG
16112517 GATCGAACGGGTGGTAGGTGGGTTCAAGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTT
131 GATCGAACGGGTGGTAGGTGGGTTCAAGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTT
* *
16112582 ATGGCTTGTAAATTCATACAA
196 ACGGCTTGTAAAGTCATACAA
* * *
16112603 CGGTCCGATCTTAGACTGGGGATAAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGGCTA
1 CGGTCCGATCTTAGACTGGGAATAAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTA
* * *
16112668 AGTCAACCCACGAAACGAGTGTGCGGACGCTCAGCCGACCAGAGAGGCAGGATGCGCAAGCCGGG
66 AGTCAACCCACAAAACGAGCGTGCGGACGATCAGCCGACCAGAGAGGCAGGATGCGCAAGCCGGG
* * * *
16112733 GATCGAACGGGTGGTAGGTGGGTTGAAGCACATTTTCATATTTTTGCCATGGCAATGCCATTTTT
131 GATCGAACGGGTGGTAGGTGGGTTCAAGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTT
16112798 ACGGCTTGTAAAGTCATACAA
196 ACGGCTTGTAAAGTCATACAA
*
16112819 TGGTCC
1 CGGTCC
16112825 CCTAAGCCTT
Statistics
Matches: 196, Mismatches: 26, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
216 196 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (216 bp):
CGGTCCGATCTTAGACTGGGAATAAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTA
AGTCAACCCACAAAACGAGCGTGCGGACGATCAGCCGACCAGAGAGGCAGGATGCGCAAGCCGGG
GATCGAACGGGTGGTAGGTGGGTTCAAGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTT
ACGGCTTGTAAAGTCATACAA
Found at i:16113373 original size:26 final size:26
Alignment explanation
Indices: 16113335--16113387 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16113325 GGCTCAAACT
16113335 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16113361 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16113387 C
1 C
16113388 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16113730 original size:159 final size:153
Alignment explanation
Indices: 16113360--16113735 Score: 389
Period size: 153 Copynumber: 2.4 Consensus size: 153
16113350 AACTCCGTAT
*
16113360 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAG
* * * * * *** *
16113425 TCAATCGAAAAGGCAGAATGCGCAAGCCGGGGACTGATCCCCCCTGCGTGCTGTTGATCCTGCTG
66 TCAACCAAAAAGGCAGAATGCACAAGCCGGGGACCGATCCCCCCTACGTGCTACCGATCCCGCTG
*
16113490 CCACAACCCTCAGCCCGATCTGA
131 CCACAACCCTCAGCCCGAGCTGA
* * * * * *
16113513 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACGCACGAAACGAGCGTTCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCA
** * *
16113577 GTCGGCCAAAAAGGCATAATGCACAAGCCGGGGATCGGCCCGATCCCCCTCTATGTGCTACCGAT
65 GTCAACCAAAAAGGCAGAATGCACAAGCCGGGGA-----CCGATCCCCC-CTACGTGCTACCGAT
* ** *
16113642 CCCGCTGTCACAACCCTTGGTCCG-GCTGGA
124 CCCGCTGCCACAACCCTCAGCCCGAGCT-GA
* * * *
16113672 GCTTAGACATTGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAT-AGGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGA-GCGTACGGGCGCTCA
16113736 ACTGACCGGA
Statistics
Matches: 179, Mismatches: 34, Indels: 14
0.79 0.15 0.06
Matches are distributed among these distances:
152 1 0.01
153 83 0.46
158 12 0.07
159 82 0.46
160 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.19
Consensus pattern (153 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAG
TCAACCAAAAAGGCAGAATGCACAAGCCGGGGACCGATCCCCCCTACGTGCTACCGATCCCGCTG
CCACAACCCTCAGCCCGAGCTGA
Found at i:16113872 original size:26 final size:26
Alignment explanation
Indices: 16113831--16113881 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16113821 CTGATCTGAT
16113831 CTTAGACTGGGAATGAACTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
*
16113857 CTTAGACTAGGG-ATGATCTCCGTAT
1 CTTAGACT-GGGAATGAACTCCGTAT
16113882 GCCTAAGTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:16114591 original size:26 final size:26
Alignment explanation
Indices: 16114554--16114605 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16114544 GCTTAAATTT
16114554 TTAGACTGGGAATGAACTCCATATGC
1 TTAGACTGGGAATGAACTCCATATGC
*
16114580 TTAGACAT-GGAATGAACTCCGTATGC
1 TTAGAC-TGGGAATGAACTCCATATGC
16114606 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:16114924 original size:26 final size:26
Alignment explanation
Indices: 16114895--16114947 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16114885 CCGATCTGAT
16114895 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
16114921 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
16114947 C
1 C
16114948 CAAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:16115655 original size:26 final size:27
Alignment explanation
Indices: 16115614--16115671 Score: 84
Period size: 26 Copynumber: 2.2 Consensus size: 27
16115604 CCGATCTGAT
*
16115614 CTTAGACTGGGAATGAACTTCGTATG-
1 CTTAGACTGGGAATGAACTCCGTATGC
16115640 CTTAGACTAGGG-ATGAACTCCGTATGC
1 CTTAGACT-GGGAATGAACTCCGTATGC
16115667 CTTAG
1 CTTAG
16115672 TCAACCCACG
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
26 21 0.72
27 8 0.28
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (27 bp):
CTTAGACTGGGAATGAACTCCGTATGC
Found at i:16115898 original size:197 final size:197
Alignment explanation
Indices: 16115530--16115906 Score: 469
Period size: 197 Copynumber: 1.9 Consensus size: 197
16115520 TCGGCCGGAG
* * *
16115530 AGGTAGAATGCGTAAGTCGGGGATCAGTCCGAACCCCCCTGCGTGCTGCCGATCCTGCGATCGCA
1 AGGTAGAATGCGTAAGTCGAGGATCAGCCCGAACCCCCCTGCGTGCTGCCGATCCTGCGACCGCA
* * *
16115595 ACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTAGGGATGAACTC
66 ACCCTCGGTCAGATCTCATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTAGGAATGAACTC
* * * * *
16115660 CGTATGCCTTAGTCAACCCACGAAACAAGCGTGCGAGTGCTCAGCCGACCAGAGAGGCCGATCGA
131 CGCATGCCTAAGTCAACCCACAAAACAAGCGTGCAAGTGCTCAACCGACCAGAGAGGCCGATCGA
16115725 AA
196 AA
* * * *
16115727 AGGTAGAATGCGTAAGTCGAGGAT-TGACCCGGACCCCCC-GACGTGCTGCTGGTCCTGCTG-CC
1 AGGTAGAATGCGTAAGTCGAGGATCAG-CCCGAACCCCCCTG-CGTGCTGCCGATCCTGC-GACC
* *
16115789 GCAACCCTCGGTTCAGTTC-CATCTTAGACTGGGAATGAACTTCGTATGCTTGGAC-ATGGAATG
63 GCAACCCTCGG-TCAGATCTCATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTA-GGAATG
** * *
16115852 AACTCCGCATGCCTAAG-CTAACCCACAAAATGAGTGTTCAAGTGCTCAACCGACC
126 AACTCCGCATGCCTAAGTC-AACCCACAAAACAAGCGTGCAAGTGCTCAACCGACC
16115907 GGATAGGTAG
Statistics
Matches: 153, Mismatches: 21, Indels: 12
0.82 0.11 0.06
Matches are distributed among these distances:
196 4 0.03
197 143 0.93
198 6 0.04
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (197 bp):
AGGTAGAATGCGTAAGTCGAGGATCAGCCCGAACCCCCCTGCGTGCTGCCGATCCTGCGACCGCA
ACCCTCGGTCAGATCTCATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTAGGAATGAACTC
CGCATGCCTAAGTCAACCCACAAAACAAGCGTGCAAGTGCTCAACCGACCAGAGAGGCCGATCGA
AA
Found at i:16116257 original size:26 final size:26
Alignment explanation
Indices: 16116218--16116268 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16116208 CCGATCTGAT
*
16116218 CTTAGACTGAGAATGAACTGCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
16116244 CTTAGACATG-GAATGAACTCCGTAT
1 CTTAGAC-TGAGAATGAACTCCGTAT
16116269 TCCTAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:16117059 original size:26 final size:26
Alignment explanation
Indices: 16117008--16117060 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16116998 CCGATCCGGT
**
16117008 CTTAGACTGGGAATGAAGTCCATATG
1 CTTAGACTGGGAATGAACACCATATG
* *
16117034 CTTAGACTGGGGATGAACACCGTATG
1 CTTAGACTGGGAATGAACACCATATG
16117060 C
1 C
16117061 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCATATG
Found at i:16117770 original size:26 final size:26
Alignment explanation
Indices: 16117732--16117784 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16117722 GGCTCAAACT
16117732 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
16117758 CTTAGACAT-GGAATTAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
16117784 C
1 C
16117785 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16118051 original size:158 final size:157
Alignment explanation
Indices: 16117765--16118185 Score: 502
Period size: 158 Copynumber: 2.7 Consensus size: 157
16117755 ATGCTTAGAC
* * * * * *
16117765 ATGGAATTAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAGCTGGTCGG
1 ATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAGGA-CGTGCGGGCGCTCAGCCGGTCGA
* * * ***
16117830 AGGGCAGAATGCGCAAGCTGGGGATCAGCTCGGTCCCTCTCTGCATGTTGCCGGTCTTGCTGCCA
65 AGGGCAGAATGCGCAAGCTGGGGATCGGCTCGGTCCCCCTCTGCATGCTGCCGGTCCCACTGCCA
* *
16117895 CAACCCT-TGATCCGGCTGGGGCTTACAT
130 CAACCCTCAG-TCCGACTGGGGCTTACAT
* *
16117923 ATGGAATGAACTCCCTATGCCTAAGCCAAACCATGAAATGGACGTGCGGGCGCTCAGCCGGTTGA
1 ATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA-GGACGTGCGGGCGCTCAGCCGGTCGA
* * * **
16117988 AGGGCAGAATGTGTAAGCTGGGGATCGGCTCGGTCCCCCTCTGCGTGCTGTTGGTCCCACTGCCA
65 AGGGCAGAATGCGCAAGCTGGGGATCGGCTCGGTCCCCCTCTGCATGCTGCCGGTCCCACTGCCA
** *
16118053 CAACCCTCAGTTTGACTGGGGCTTAGAT
130 CAACCCTCAGTCCGACTGGGGCTTACAT
* * * **
16118081 ATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGAAGTGCAGGCACTCAGCCGACCGA
1 ATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA-GGACGTGCGGGCGCTCAGCCGGTCG-
* * *
16118146 AAAGGAAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCC
64 AAGGGCAGAATGCGCAAGCTGGGGATCGGCTCGGTCCCCC
16118186 ATGAGTGCTA
Statistics
Matches: 223, Mismatches: 37, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
158 185 0.83
159 38 0.17
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.19
Consensus pattern (157 bp):
ATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAGGACGTGCGGGCGCTCAGCCGGTCGAA
GGGCAGAATGCGCAAGCTGGGGATCGGCTCGGTCCCCCTCTGCATGCTGCCGGTCCCACTGCCAC
AACCCTCAGTCCGACTGGGGCTTACAT
Found at i:16118237 original size:158 final size:156
Alignment explanation
Indices: 16117757--16118225 Score: 501
Period size: 158 Copynumber: 3.0 Consensus size: 156
16117747 AACTCCATAT
* * * *
16117757 GCTTAGACATGGAATTAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCA-TGCGGGCGCTCA
1 GCTTAGATATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACG-GAAGTGCGGGCGCTCA
* * * *
16117821 GCTGGTCGGAGGGCAGAATGCGCAAGCTGGGGATCAGCTCGGTCCCTCTCTGCA-TGTTGCCGGT
65 GCCGGTCGAAGGGCAGAATGCGCAAGCTGGGGATCGGCTCGGTCCC-C-CTG-AGTGCTGCCGGT
* *
16117885 CTTGCTGCCACAACCCTTGATCCGGCTGGG
127 CCTGCTGCCACAACCCTTGGTCCGGCTGGG
* * * *
16117915 GCTTACATATGGAATGAACTCCCTATGCCTAAGCCAAACCATGAAATGGACGTGCGGGCGCTCAG
1 GCTTAGATATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGAAGTGCGGGCGCTCAG
* * * * **
16117980 CCGGTTGAAGGGCAGAATGTGTAAGCTGGGGATCGGCTCGGTCCCCCTCTGCGTGCTGTTGGTCC
66 CCGGTCGAAGGGCAGAATGCGCAAGCTGGGGATCGGCTCGGT-CCCC-CTGAGTGCTGCCGGTCC
** ** ** *
16118045 CACTGCCACAACCCTCAGTTTGACTGGG
129 TGCTGCCACAACCCTTGGTCCGGCTGGG
* *
16118073 GCTTAGATATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGAAGTGCAGGCACTCAG
1 GCTTAGATATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGAAGTGCGGGCGCTCAG
** * * * * *
16118138 CCGACCGAAAAGGAAGAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCATGAGTGCTACCGATCC
66 CCGGTCG-AAGGGCAGAATGCGCAAGCTGGGGATCGGCTCGGTCCCCC-TGAGTGCTGCCGGTCC
* **
16118203 TGCTACCGTAACCCTTGGTCCGG
129 TGCTGCCACAACCCTTGGTCCGG
16118226 TCTGATCTTA
Statistics
Matches: 250, Mismatches: 56, Indels: 10
0.79 0.18 0.03
Matches are distributed among these distances:
157 2 0.01
158 215 0.86
159 33 0.13
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.20
Consensus pattern (156 bp):
GCTTAGATATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGAAGTGCGGGCGCTCAG
CCGGTCGAAGGGCAGAATGCGCAAGCTGGGGATCGGCTCGGTCCCCCTGAGTGCTGCCGGTCCTG
CTGCCACAACCCTTGGTCCGGCTGGG
Found at i:16119002 original size:26 final size:26
Alignment explanation
Indices: 16118963--16119041 Score: 142
Period size: 26 Copynumber: 3.0 Consensus size: 26
16118953 CTGGTCTGAT
16118963 CTTAGA-ATGAGAATGAACTCCGTATG
1 CTTAGACATG-GAATGAACTCCGTATG
16118989 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
16119015 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
16119041 C
1 C
16119042 CTAAGCCAAC
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
26 49 0.94
27 3 0.06
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:16119738 original size:26 final size:25
Alignment explanation
Indices: 16119692--16119751 Score: 79
Period size: 26 Copynumber: 2.4 Consensus size: 25
16119682 CCCTCGATCT
*
16119692 ACTCCG-AT-CTTAGATTGGAATGA
1 ACTCCGTATGCTTAGAATGGAATGA
16119715 ACTCCGTATGCTTAGACATGGAATGA
1 ACTCCGTATGCTTAGA-ATGGAATGA
*
16119741 ACTCTGTATGC
1 ACTCCGTATGC
16119752 CTAAGCGAAC
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
23 6 0.19
24 2 0.06
25 6 0.19
26 18 0.56
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (25 bp):
ACTCCGTATGCTTAGAATGGAATGA
Found at i:16120140 original size:159 final size:159
Alignment explanation
Indices: 16119724--16120220 Score: 431
Period size: 159 Copynumber: 3.1 Consensus size: 159
16119714 AACTCCGTAT
* ** * *
16119724 GCTTAGACATGGAATGAACTCTG-TATGCCTAAGCGAACCCATAAAACAAGCGTGCGAGCGCTCA
1 GCTTAGACATGGAATGAACTC-GCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* *
16119788 GTCGGCTGGAGAGGCAGAATGCACAAGCCGGGGATCAGCCCGATCACCCCCTACGTGCTATCGAT
65 GTCGGCTAGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCACCCCCTACGTGCTATCGAT
* **
16119853 CCTGCTACTGCAACCCTCGATCCGGTCTGA
130 CCCGCTACCACAACCCTCGATCCGGTCTGA
** * * * * * *
16119883 TTTTAGACTTGGAATGAACTC-CTTTTGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCGATGA
1 GCTTAGACATGGAATGAACTCGC-TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
16119947 GCCGGCCTA-AGAGGCATAATGCGCAAGCCAGGGATC-GACTCGGTC-CCCCTCTACGTGCTGCT
65 GTCGG-CTAGAGAGGCAGAATGCGCAAGCCGGGGATCAG-CCCGATCACCCC-CTACGTGCT-AT
* * *
16120009 GGA-CCCGCTGCCACAACCCTCTG-TCCGGT-TAGG
126 CGATCCCGCTACCACAACCCTC-GATCCGGTCT-GA
* * *
16120042 GCTTAGACATGGAATGAACTCGCTATGCCTAAGCCAACCCACGAAATGGGAGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCGCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* ** * * * *
16120107 TCGG-TCAGAGAGGCAGAATGCGCAAGTCGGGGATTGGCCTGGTC-CCCCCTGCGTGCTGTCGAT
66 TCGGCT-AGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCACCCCCTACGTGCTATCGAT
** * ** *
16120170 CCTACTATCGTAACCCTCGATCCGATCTGA
130 CCCGCTACCACAACCCTCGATCCGGTCTGA
*
16120200 TCTTAGAC-TGGGAATGAACTC
1 GCTTAGACAT-GGAATGAACTC
16120221 CGTATGCTTA
Statistics
Matches: 265, Mismatches: 57, Indels: 33
0.75 0.16 0.09
Matches are distributed among these distances:
157 6 0.02
158 51 0.19
159 200 0.75
160 8 0.03
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCGCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
TCGGCTAGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGATCACCCCCTACGTGCTATCGATC
CCGCTACCACAACCCTCGATCCGGTCTGA
Found at i:16120230 original size:26 final size:26
Alignment explanation
Indices: 16120201--16120253 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16120191 CCGATCTGAT
16120201 CTTAGACTGGGA-ATGAACTCCGTATG
1 CTTAGACTGGGATA-GAACTCCGTATG
*
16120227 CTTAGACTGGGGTAGAACTCCGTATG
1 CTTAGACTGGGATAGAACTCCGTATG
16120253 C
1 C
16120254 ATAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGATAGAACTCCGTATG
Found at i:16121658 original size:26 final size:26
Alignment explanation
Indices: 16121609--16121661 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16121599 GTTGTCTTAG
*
16121609 GCATACGGAGTTCATTCTATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
16121635 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
16121661 G
1 G
16121662 AGTTTGAACC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:16122643 original size:26 final size:26
Alignment explanation
Indices: 16122606--16122658 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16122596 GTTAGCCTAG
*
16122606 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
16122632 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16122658 G
1 G
16122659 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16122841 original size:26 final size:26
Alignment explanation
Indices: 16122812--16122865 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
16122802 TGGGTTGACT
*
16122812 TAGGCATACGGAGTTCATCCCCAGTC
1 TAGGCATACGAAGTTCATCCCCAGTC
*
16122838 TAGGCATACGAAGTTCATTCCCAGTC
1 TAGGCATACGAAGTTCATCCCCAGTC
16122864 TA
1 TA
16122866 AGATCAGATC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (26 bp):
TAGGCATACGAAGTTCATCCCCAGTC
Found at i:16123354 original size:26 final size:26
Alignment explanation
Indices: 16123316--16123368 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16123306 GTTGGCTTAG
16123316 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
* *
16123342 GCATATGGGGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16123368 G
1 G
16123369 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16123737 original size:26 final size:26
Alignment explanation
Indices: 16123659--16123727 Score: 138
Period size: 26 Copynumber: 2.7 Consensus size: 26
16123649 GTTGGCTTAG
16123659 GCATACGGAGTTCATTCAATGTCTAA
1 GCATACGGAGTTCATTCAATGTCTAA
16123685 GCATACGGAGTTCATTCAATGTCTAA
1 GCATACGGAGTTCATTCAATGTCTAA
16123711 GCATACGGAGTTCATTC
1 GCATACGGAGTTCATTC
16123728 CCAGTCTAAG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCAATGTCTAA
Found at i:16130122 original size:26 final size:26
Alignment explanation
Indices: 16130082--16130135 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
16130072 TGGGTTGACT
*
16130082 TAGGCATACGTAGTTCATACCCAGTC
1 TAGGCATACGGAGTTCATACCCAGTC
*
16130108 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATACCCAGTC
16130134 TA
1 TA
16130136 AGATCGGATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATACCCAGTC
Found at i:16130465 original size:26 final size:26
Alignment explanation
Indices: 16130428--16130479 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16130418 GTTGGCTTAG
16130428 GCATACCGAGTTCATT-CCATGTCTAA
1 GCATACCGAGTTCATTCCCA-GTCTAA
16130454 GCATA-CGAAGTTCATTCCCAGTCTAA
1 GCATACCG-AGTTCATTCCCAGTCTAA
16130480 TAGTTTGAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 2 0.08
26 19 0.79
27 3 0.12
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCCAGTCTAA
Found at i:16131372 original size:26 final size:26
Alignment explanation
Indices: 16131336--16131387 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16131326 TGGCTTAGGC
*
16131336 ATACGGAGTTCATT-CCATGTCTAAGA
1 ATACAGAGTTCATTCCCA-GTCTAAGA
16131362 ATACAGAGTTCATTCCCAGTCTAAGA
1 ATACAGAGTTCATTCCCAGTCTAAGA
16131388 TCAGACCGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGA
Found at i:16131750 original size:158 final size:159
Alignment explanation
Indices: 16131462--16131761 Score: 370
Period size: 158 Copynumber: 1.9 Consensus size: 159
16131452 TGGGCCCCCG
* * *
16131462 GCTTGCGCATTCTACCTCTCCGATCGACTGAGCGCCCGCACGCTCGTTTAGTGGGTTGGCTTAGG
1 GCTTGCACATTCTACCTCTCCGATCGACTGAGCGCCCACACGCCCGTTTAGTGGGTTGGCTTAGG
*** *
16131527 CATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGACAGTAGGATCAGCAG
66 CATACGGAGTTCATTCCCAGTCTAAGACCAGACCAGACCGAGGGTTGCGACAGTAGGACCAGCAG
16131592 CACGTA-AGGGGAACCGTGTCGATCCTCA
131 CACGTAGAGGGGAACCGTGTCGATCCTCA
* * * *
16131620 GCTTGCACATTCTACCTCTCTGATCGACTGAGTGCCCACACGCCCGTTTCGTGGGTTGGTTTAGG
1 GCTTGCACATTCTACCTCTCCGATCGACTGAGCGCCCACACGCCCGTTTAGTGGGTTGGCTTAGG
* ** * * * * * ** * *
16131685 CATAGGGAGTTCATTCCGTGTCTAAGCCCCAG-TCGGATCGAGGGTTGTGGTAGTGGGACCGGCA
66 CATACGGAGTTCATTCCCAGTCTAAG-ACCAGACCAGACCGAGGGTTGCGACAGTAGGACCAGCA
16131749 GCACGTAGAGGGG
130 GCACGTAGAGGGG
16131762 GACAGGGCTG
Statistics
Matches: 117, Mismatches: 23, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
158 111 0.95
159 6 0.05
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (159 bp):
GCTTGCACATTCTACCTCTCCGATCGACTGAGCGCCCACACGCCCGTTTAGTGGGTTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGACCAGACCAGACCGAGGGTTGCGACAGTAGGACCAGCAG
CACGTAGAGGGGAACCGTGTCGATCCTCA
Found at i:16132599 original size:26 final size:26
Alignment explanation
Indices: 16132569--16132621 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16132559 GTTGACTTAG
16132569 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
**
16132595 GCATACGTTGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16132621 G
1 G
16132622 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16132783 original size:26 final size:26
Alignment explanation
Indices: 16132753--16132805 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16132743 GTTGGCTTAG
*
16132753 GCATATGGAGTTCATTCC-ATGTCTAA
1 GCATATGAAGTTCATTCCTA-GTCTAA
16132779 GCATATGAAGTTCATTCCTAGTCTAA
1 GCATATGAAGTTCATTCCTAGTCTAA
16132805 G
1 G
16132806 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (26 bp):
GCATATGAAGTTCATTCCTAGTCTAA
Found at i:16133157 original size:26 final size:26
Alignment explanation
Indices: 16133120--16133172 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16133110 TTTGGCTTAG
16133120 GCATACGAAGTTCATTC-CATGTCTAA
1 GCATACGAAGTTCATTCTCA-GTCTAA
*
16133146 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATTCTCAGTCTAA
16133172 G
1 G
16133173 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCTCAGTCTAA
Found at i:16133354 original size:26 final size:26
Alignment explanation
Indices: 16133320--16133369 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
16133310 GACTTAGGCA
*
16133320 TACGTAGTTCATCCCCAGTCTAAGCC
1 TACGGAGTTCATCCCCAGTCTAAGCC
*
16133346 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATCCCCAGTCTAAG
16133370 ATCGGACCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAGTCTAAGCC
Found at i:16133695 original size:26 final size:25
Alignment explanation
Indices: 16133659--16133710 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
16133649 GTTAGCTTAG
*
16133659 GCATATGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCA-GTCTAA
16133685 GCATACGAAGTTCATTCCAGTCTAA
1 GCATACGAAGTTCATTCCAGTCTAA
16133710 G
1 G
16133711 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (25 bp):
GCATACGAAGTTCATTCCAGTCTAA
Found at i:16134414 original size:26 final size:26
Alignment explanation
Indices: 16134384--16134436 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16134374 GTTGACTTAG
16134384 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
**
16134410 GCATACGTTGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16134436 G
1 G
16134437 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16134598 original size:26 final size:26
Alignment explanation
Indices: 16134568--16134620 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16134558 GTTGGCTTAG
*
16134568 GCATATGGAGTTCATTCC-ATGTCTAA
1 GCATATGAAGTTCATTCCTA-GTCTAA
16134594 GCATATGAAGTTCATTCCTAGTCTAA
1 GCATATGAAGTTCATTCCTAGTCTAA
16134620 G
1 G
16134621 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (26 bp):
GCATATGAAGTTCATTCCTAGTCTAA
Found at i:16134972 original size:26 final size:26
Alignment explanation
Indices: 16134935--16134987 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16134925 TTTGGCTTAG
16134935 GCATACGAAGTTCATTC-CATGTCTAA
1 GCATACGAAGTTCATTCTCA-GTCTAA
*
16134961 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATTCTCAGTCTAA
16134987 G
1 G
16134988 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCTCAGTCTAA
Found at i:16135169 original size:26 final size:26
Alignment explanation
Indices: 16135135--16135184 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
16135125 GACTTAGGCA
*
16135135 TACGTAGTTCATCCCCAGTCTAAGCC
1 TACGGAGTTCATCCCCAGTCTAAGCC
* *
16135161 TACGGAGTTTATTCCCAGTCTAAG
1 TACGGAGTTCATCCCCAGTCTAAG
16135185 ATCGGACCGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAGTCTAAGCC
Found at i:16135510 original size:26 final size:25
Alignment explanation
Indices: 16135474--16135525 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
16135464 GTTAGCTTAG
*
16135474 GCATATGAAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCA-GTCTAA
16135500 GCATACGAAGTTCATTCCAGTCTAA
1 GCATACGAAGTTCATTCCAGTCTAA
16135525 G
1 G
16135526 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (25 bp):
GCATACGAAGTTCATTCCAGTCTAA
Found at i:16136519 original size:11 final size:11
Alignment explanation
Indices: 16136503--16136535 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
16136493 CCTAGGGCAC
16136503 CATCGCCAGAG
1 CATCGCCAGAG
16136514 CATCGCCAGAG
1 CATCGCCAGAG
16136525 CATCGCCAGAG
1 CATCGCCAGAG
16136536 AGCCTAACCG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.27, C:0.36, G:0.27, T:0.09
Consensus pattern (11 bp):
CATCGCCAGAG
Found at i:16137146 original size:26 final size:26
Alignment explanation
Indices: 16137116--16137165 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
16137106 GTTGACTTAG
16137116 GCATACAG-AGTTCATCCCTAGTCTAA
1 GCATAC-GTAGTTCATCCCTAGTCTAA
* *
16137142 GCATACGTTGTTCATTCCTAGTCT
1 GCATACGTAGTTCATCCCTAGTCT
16137166 CAGATCAAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 1 0.05
26 20 0.95
ACGTcount: A:0.24, C:0.26, G:0.16, T:0.34
Consensus pattern (26 bp):
GCATACGTAGTTCATCCCTAGTCTAA
Found at i:16137653 original size:26 final size:26
Alignment explanation
Indices: 16137617--16137669 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16137607 GTTGGCTAGG
16137617 GCATATAGAGTTCATT-TCATGTCTAA
1 GCATATAGAGTTCATTCTCA-GTCTAA
*
16137643 GCATATGGAGTTCATTCTCAGTCTAA
1 GCATATAGAGTTCATTCTCAGTCTAA
16137669 G
1 G
16137670 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (26 bp):
GCATATAGAGTTCATTCTCAGTCTAA
Found at i:16138146 original size:158 final size:157
Alignment explanation
Indices: 16137858--16138192 Score: 397
Period size: 158 Copynumber: 2.1 Consensus size: 157
16137848 TAAGCATATA
* * ** *
16137858 GAGTTCATTCCCAGTCTAAGATCGGATAGGATCGAAGGTTGTGGTAGCAGGATCGATAGCACACA
1 GAGTTCATT-CCAGTCTAAGATCGGATAGAACCGAAGGTTACGATAGCAGGATCGATAGCACACA
* * *
16137923 AGGGGGACCGGGTCGATCCTCGGCTTGCGTATTATGCCTCTCCGATCGGCTCAACACCCGAACGC
65 AGGGGGACCAGGTCGATCCCCGGCTTACGTATTATGCCTCTCCGATCGGCTCAACACCCGAACGC
16137988 TCATTTCGTGGGTTGACTTAGGCATACG
130 TCATTTCGTGGGTTGACTTAGGCATACG
* * * *
16138016 GAGTTCATTCCTAGTCTAAGATTGGATCA-AACCGAGGGTTACGATAGCAGGATGGATAGCAC-G
1 GAGTTCATTCC-AGTCTAAGATCGGAT-AGAACCGAAGGTTACGATAGCAGGATCGATAGCACAC
* * * * * *
16138079 TAGGTGGGACCAGGTCGATCCCCGGCTTACGTATTTTGCCTCTCCGA-CTGGCTGAGCGCCCGCA
64 AAGG-GGGACCAGGTCGATCCCCGGCTTACGTATTATGCCTCTCCGATC-GGCTCAACACCCGAA
* * * *
16138143 CGCTCGTTTCGTGGGTTGGCTTAGGCTTATG
127 CGCTCATTTCGTGGGTTGACTTAGGCATACG
16138174 GAGTTCATTCCATGTCTAA
1 GAGTTCATTCCA-GTCTAA
16138193 CAATATGGAG
Statistics
Matches: 150, Mismatches: 22, Indels: 10
0.82 0.12 0.05
Matches are distributed among these distances:
157 7 0.05
158 142 0.95
159 1 0.01
ACGTcount: A:0.21, C:0.24, G:0.29, T:0.26
Consensus pattern (157 bp):
GAGTTCATTCCAGTCTAAGATCGGATAGAACCGAAGGTTACGATAGCAGGATCGATAGCACACAA
GGGGGACCAGGTCGATCCCCGGCTTACGTATTATGCCTCTCCGATCGGCTCAACACCCGAACGCT
CATTTCGTGGGTTGACTTAGGCATACG
Found at i:16139171 original size:159 final size:159
Alignment explanation
Indices: 16138953--16139366 Score: 494
Period size: 159 Copynumber: 2.6 Consensus size: 159
16138943 CAGACCGATC
* * * ** * * **
16138953 CCTGACTTGCGCATTCTACCTCTCCGGCCAATTGAGCGCACGCACACCCATTTCGTGGGTTAACT
1 CCTGGCTTACGCATTCTGCCTCTCCGGCCAGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCT
*
16139018 TAGGCATAGGGAGTTCATTCCATGTGTAAGCCCCAGCC-GAATCGAGGGTTGTGGTAACGGGACC
66 TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAG-ATCGAGGGTTGTGGTAACGGGACC
* * *
16139082 GACAGCACGCAGAAAGGGG-TCGGTCCGA-T
130 GACAGCACGCAG-AAGGGGACCGGGCCAATT
* * * *
16139111 CCTCGGCTTATGCATTCTGCCTCTCTGGCCAGCTGAGCACCCGCACGCCCATTTCATGGGTTGGC
1 CCT-GGCTTACGCATTCTGCCTCTCCGGCCAGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGC
* * * **
16139176 TTAGGCATAGGGAGTTTATTCCACGTCTAAGCCTCAGCCAGATCGAGGGTTGTGGTTGCGGGACC
65 TTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGATCGAGGGTTGTGGTAACGGGACC
*
16139241 GACAGCACGCAGAGGGGGACCGGGCCAATT
130 GACAGCACGCAGAAGGGGACCGGGCCAATT
* ** * * *
16139271 CCTGGCTTGCGCATTCTGCCTCTCCGATC-GACTGAGCGCCCACACGCTCGTTTCGTGGGTTGGC
1 CCTGGCTTACGCATTCTGCCTCTCCGGCCAG-CTGAGCGCCCGCACGCCCATTTCGTGGGTTGGC
*
16139335 TTAGGCATACGGAGTTCATTCCATGTCTAAGC
65 TTAGGCATAGGGAGTTCATTCCATGTCTAAGC
16139367 ATACGGAGTT
Statistics
Matches: 215, Mismatches: 36, Indels: 9
0.83 0.14 0.03
Matches are distributed among these distances:
158 9 0.04
159 201 0.93
160 5 0.02
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.23
Consensus pattern (159 bp):
CCTGGCTTACGCATTCTGCCTCTCCGGCCAGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCT
TAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGATCGAGGGTTGTGGTAACGGGACCG
ACAGCACGCAGAAGGGGACCGGGCCAATT
Found at i:16139375 original size:26 final size:26
Alignment explanation
Indices: 16139339--16139391 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16139329 GTTGGCTTAG
16139339 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16139365 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16139391 G
1 G
16139392 ATCTGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16139875 original size:26 final size:26
Alignment explanation
Indices: 16139845--16139897 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16139835 GTTGACTTAG
*
16139845 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
*
16139871 GCATACGAAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16139897 G
1 G
16139898 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16140656 original size:26 final size:26
Alignment explanation
Indices: 16140619--16140671 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16140609 GTTGGCTTAG
*
16140619 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
16140645 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16140671 G
1 G
16140672 ATCGGATCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16141900 original size:26 final size:26
Alignment explanation
Indices: 16141864--16141950 Score: 113
Period size: 26 Copynumber: 3.3 Consensus size: 26
16141854 GTTGGCTTAG
*
16141864 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
* * *
16141890 GCATATGGAGTTCATTCCCA-ATCTAG
1 GCATACGGAGTTCATT-CCATGTCTAA
*
16141916 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
16141942 GCATACGGA
1 GCATACGGA
16141951 TCGAGGTTTA
Statistics
Matches: 50, Mismatches: 9, Indels: 4
0.79 0.14 0.06
Matches are distributed among these distances:
25 3 0.06
26 44 0.88
27 3 0.06
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:16142127 original size:26 final size:26
Alignment explanation
Indices: 16142097--16142146 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
16142087 TTGGCTTAGG
16142097 CATACGGAGTTCATCCCCAATCTATA
1 CATACGGAGTTCATCCCCAATCTATA
*
16142123 CATACGGAGTTCATTCCCAATCTA
1 CATACGGAGTTCATCCCCAATCTA
16142147 AGATTGGACT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.30, G:0.12, T:0.28
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAATCTATA
Found at i:16142660 original size:26 final size:26
Alignment explanation
Indices: 16142624--16142675 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16142614 TTGACTTAGA
16142624 CATATAGAGTTCAGCCCCAGTCTAAG
1 CATATAGAGTTCAGCCCCAGTCTAAG
* **
16142650 CATATGGAGTTCATTCCCAGTCTAAG
1 CATATAGAGTTCAGCCCCAGTCTAAG
16142676 ATCTGACAGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
CATATAGAGTTCAGCCCCAGTCTAAG
Found at i:16142893 original size:184 final size:183
Alignment explanation
Indices: 16142340--16142893 Score: 549
Period size: 184 Copynumber: 3.0 Consensus size: 183
16142330 GCAGTGGGAC
* * * * * *
16142340 CGGTAGCACGTAGAGGGGGATCGGGCTGATCCTCGA-CTTGTGCATTCTGTTTCTCTGATCGGTT
1 CGGTAGCACGTA-CGGGGGACCAGGCTGATCC-CTATCTTGTGCATTCTGCTTCTCCGATCGGTT
* * ** * * *
16142404 GAGTGCCTGCACATTCATTTCATGGGTTGGCTTAGGCATAC-GAAGGTCATTCTATGTCCAAGCA
64 GAGTGCCCGTACGCTCATTTCGTGGGTT-GCTTAGGCATACAG-AGTTCATTCCATGTCCAAGCA
* **
16142468 TATAGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGATGCGAAAGCAGGAT
127 TATAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGATGCGGCAGCAGGAT
* * * * * * * ** * * *
16142525 TGGCAACACGCACGAGGGACCA-GATCGATCCCTGTCTTGCACATTCTGCTTCTTCGGTCGGCTG
1 CGGTAGCACGTACGGGGGACCAGGCT-GATCCCTATCTTGTGCATTCTGCTTCTCCGATCGGTTG
* * * * ** *
16142589 AATGCCCGTATGCTCATTTCGTGGGTTGACTTAGACATATAGAGTTCAGCCCCA-GTCTAAGCAT
65 AGTGCCCGTACGCTCATTTCGTGGGTTG-CTTAGGCATACAGAGTTCA-TTCCATGTCCAAGCAT
* * * * *
16142653 ATGGAGTTCATTCCCAGTCTAAGATCTGACAGGATTGAGGGATGCGGCATCAGGAT
128 ATAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGATGCGGCAGCAGGAT
* *
16142709 CGGTAGCACGTACGGGGGACCAGGCTGATCCCTATCTTATGCATTCTGCCTCTCCGATCGGTTGA
1 CGGTAGCACGTACGGGGGACCAGGCTGATCCCTATCTTGTGCATTCTGCTTCTCCGATCGGTTGA
** * * *
16142774 GCACCCGTACGCTCGTTTCGTGGGCTTGCTTAGGCATACAGAGTTCATTCCATGTCGAAGCATAC
66 GTGCCCGTACGCTCATTTCGTGGG-TTGCTTAGGCATACAGAGTTCATTCCATGTCCAAGCATAT
** * *
16142839 AGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTGGCAGCAGGAT
130 AGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGATGCGGCAGCAGGAT
16142893 C
1 C
16142894 AATAGCAAAA
Statistics
Matches: 287, Mismatches: 74, Indels: 17
0.76 0.20 0.04
Matches are distributed among these distances:
183 7 0.02
184 264 0.92
185 16 0.06
ACGTcount: A:0.22, C:0.24, G:0.27, T:0.26
Consensus pattern (183 bp):
CGGTAGCACGTACGGGGGACCAGGCTGATCCCTATCTTGTGCATTCTGCTTCTCCGATCGGTTGA
GTGCCCGTACGCTCATTTCGTGGGTTGCTTAGGCATACAGAGTTCATTCCATGTCCAAGCATATA
GAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGATGCGGCAGCAGGAT
Found at i:16143658 original size:26 final size:26
Alignment explanation
Indices: 16143622--16143674 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16143612 GTTGACTTAG
16143622 GCATACGGAGTTCAACCCCAGTCTAA
1 GCATACGGAGTTCAACCCCAGTCTAA
**
16143648 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAACCCCAGTCTAA
16143674 G
1 G
16143675 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCAACCCCAGTCTAA
Found at i:16143869 original size:16 final size:16
Alignment explanation
Indices: 16143845--16143876 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
16143835 ATGGAGTTCA
16143845 TTCCCACGATTGGGGG
1 TTCCCACGATTGGGGG
*
16143861 TTCCGACGATTGGGGG
1 TTCCCACGATTGGGGG
16143877 GGCCGGGGGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.12, C:0.22, G:0.41, T:0.25
Consensus pattern (16 bp):
TTCCCACGATTGGGGG
Found at i:16144446 original size:26 final size:26
Alignment explanation
Indices: 16144417--16144469 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16144407 GTTGACTTAG
*
16144417 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16144443 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16144469 G
1 G
16144470 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16144969 original size:26 final size:26
Alignment explanation
Indices: 16144915--16144970 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
16144905 TGTGTTGGCT
** *
16144915 TAAGCATACAGAGTTCATTCCTTGTC
1 TAAGCATACAGAGTTCATTCCCAGCC
16144941 TAAGCATACAGAGTTCATTCCCAGCC
1 TAAGCATACAGAGTTCATTCCCAGCC
16144967 TAAG
1 TAAG
16144971 ATCAGATCGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAGCC
Found at i:16145157 original size:26 final size:26
Alignment explanation
Indices: 16145127--16145178 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16145117 GTTGACTTAG
*
16145127 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
16145153 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16145179 AATCGAATCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16145402 original size:158 final size:158
Alignment explanation
Indices: 16145196--16145496 Score: 388
Period size: 158 Copynumber: 1.9 Consensus size: 158
16145186 TCAGATCGAT
*
16145196 GGTTGTGGCAACAGCATTAACAGCACACAGGGGGGGCCGAGCCCATCCTCGGCTTGCACATTCTG
1 GGTTGTGGCAACAGCATTAACAGCACACAGGGGGGACCGAGCCCATCCTCGGCTTGCACATTCTG
* * * * * *
16145261 CCTTTCTGGCCGACTGAGCG-CTCGTAAGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCA
66 CCTTTCCGACCGACTGAGCGCCT-GCAAGCTCATTTCGTGGGTTGGCTTAGGCAAACGGAGTTCA
* *
16145325 TTCCATGTTTAAGCCCCAGTCGGACCGAG
130 TTACATGTCTAAGCCCCAGTCGGACCGAG
* * ** * * * * *
16145354 GGTTGTGGCAGCAGGATTGGCAGCACGCAGGGGGGATCGGGCCGATCCTCGGCTTGCGCATTCTG
1 GGTTGTGGCAACAGCATTAACAGCACACAGGGGGGACCGAGCCCATCCTCGGCTTGCACATTCTG
* * * *
16145419 CCTTTCCGACTGACTGAGTGCCTGCACGCTCATTTTGTGGGTTGGCTTAGGCAAACGGAGTTCAT
66 CCTTTCCGACCGACTGAGCGCCTGCAAGCTCATTTCGTGGGTTGGCTTAGGCAAACGGAGTTCAT
16145484 TACATGTCTAAGC
131 TACATGTCTAAGC
16145497 ATACGGAGTT
Statistics
Matches: 120, Mismatches: 22, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
158 118 0.98
159 2 0.02
ACGTcount: A:0.18, C:0.26, G:0.32, T:0.25
Consensus pattern (158 bp):
GGTTGTGGCAACAGCATTAACAGCACACAGGGGGGACCGAGCCCATCCTCGGCTTGCACATTCTG
CCTTTCCGACCGACTGAGCGCCTGCAAGCTCATTTCGTGGGTTGGCTTAGGCAAACGGAGTTCAT
TACATGTCTAAGCCCCAGTCGGACCGAG
Found at i:16146116 original size:26 final size:26
Alignment explanation
Indices: 16146078--16146130 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16146068 GTTGACATAG
16146078 GCATACGATGTTCATCCCCAGTCTAA
1 GCATACGATGTTCATCCCCAGTCTAA
*
16146104 GCATACGGA-GTTCATTCCCAGTCTAA
1 GCATAC-GATGTTCATCCCCAGTCTAA
16146130 G
1 G
16146131 ATTGAATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGATGTTCATCCCCAGTCTAA
Found at i:16147103 original size:26 final size:26
Alignment explanation
Indices: 16147054--16147106 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16147044 GTTGGCTTAG
*
16147054 GCATACGGAGTTCATTCGATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
16147080 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
16147106 G
1 G
16147107 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:16147813 original size:26 final size:26
Alignment explanation
Indices: 16147777--16147829 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16147767 GTTGACTTAG
16147777 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
16147803 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16147829 G
1 G
16147830 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16148169 original size:159 final size:157
Alignment explanation
Indices: 16147943--16148304 Score: 359
Period size: 158 Copynumber: 2.3 Consensus size: 157
16147933 CGCAAGCCCG
* * * *
16147943 TTTCGTGGGTTGCCTTAGGCATAGGGAGTTCATTCCATGTCTAAGTCCCAGCCAGACCGAGGGTT
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCA-ATCTAAGTCCCAGCCAGACCGAGGATT
* ** * ** *
16148008 GTGGTAGTGGGACC-AGCAGCACGCAGAGGAGGACCGGGTCGATCCTTGGCTTGCGCATTATGCC
65 GTGATAGCAGGACCGA-CAGCACACAG-GGAGGACCGGGTCGATCCCCGACTTGCGCATTATGCC
* * *
16148072 TCTCCGGTCGACTCAATGCCCAAACGCTCA
128 TCTCCGATCGACTCAACGCCCAAACACTCA
* ** * *
16148102 TTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGATCGA-ACCGAGGAT
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCAATCTAAG-TCCCAGCCAGACCGAGGAT
* * * * * *
16148166 TGTGATAGCAGGATCGACAGCACACAGGGGGGATCGGGTTGGTCCCCGACTTGCGCATTCTGCCT
64 TGTGATAGCAGGACCGACAGCACACAGGGAGGACCGGGTCGATCCCCGACTTGCGCATTATGCCT
* * * ** *
16148231 CTCTGATCGATTGAACGCCCGTACACTCG
129 CTCCGATCGACTCAACGCCCAAACACTCA
* *
16148260 TTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCAAGTCTAAG
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAA-TCTAAG
16148305 CATACAGAGT
Statistics
Matches: 165, Mismatches: 34, Indels: 9
0.79 0.16 0.04
Matches are distributed among these distances:
157 4 0.02
158 87 0.53
159 65 0.39
160 9 0.05
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (157 bp):
TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAATCTAAGTCCCAGCCAGACCGAGGATTG
TGATAGCAGGACCGACAGCACACAGGGAGGACCGGGTCGATCCCCGACTTGCGCATTATGCCTCT
CCGATCGACTCAACGCCCAAACACTCA
Found at i:16148307 original size:26 final size:26
Alignment explanation
Indices: 16148278--16148356 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
16148268 GTTGGCTTAG
16148278 GCATACAGAGTTCATTCCAAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
16148304 GCATACAGAGTTCATTCCAAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
* * *
16148330 GCATACGGAGGTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCAAGTCTAA
16148356 G
1 G
16148357 ATCAAACAGG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCAAGTCTAA
Found at i:16150122 original size:25 final size:26
Alignment explanation
Indices: 16150093--16150144 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16150083 GTTGACTTAG
*
16150093 GCATAC-GACGTTCA-TCCCAGTCTAA
1 GCATACGGA-GTTCATTCCCAATCTAA
16150118 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
16150144 G
1 G
16150145 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 11 0.46
26 13 0.54
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:16150585 original size:158 final size:158
Alignment explanation
Indices: 16150248--16150928 Score: 516
Period size: 158 Copynumber: 4.3 Consensus size: 158
16150238 TTGAATGCCT
* * * * *
16150248 GCACGCCCGTTTCACGGTTTGGGTTAAGCATAGGGAGTTAATTCCATGTCTAAGCCCCAGCCGAA
1 GCACG-CCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAA
* * * * * * *
16150313 CCGTGGGTTGTGTGGTAGCGGGATCAACAGCACACAGAAAGAGA-CAGGGCTGATCCCCGACTTG
65 CCGAGGG-T-TGTGGCAGCGAGACCAACAGCACACAGAAGGGGATC-GGGCTGATCCCCAACTTG
* * *
16150377 TGCATTCTGCCTCTCTAGTCGA-CTGAGTGCCC
127 TGCATTCTGCCTCTC-CGTCAAGCTGAGCGCCC
* * * * *
16150409 GCACGCCTATTTCGTGGGTTGGCTTAGGCATAGGGA-TTCATTCCATGTCTAAGTCCCAGGCAAA
1 GCACGCC-GTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAA
* ** * *
16150473 CCGAGGGTTGTGGCAGCGAGACCGACAGCATGCAGAAGGGCA-CTGGGCTGATCCCCAACTTGCG
65 CCGAGGGTTGTGGCAGCGAGACCAACAGCACACAGAAGGGGATC-GGGCTGATCCCCAACTTGTG
16150537 CATTCTGCCTCTCCGTCAAGCTGAGCGCCC
129 CATTCTGCCTCTCCGTCAAGCTGAGCGCCC
* * * * * **
16150567 GTACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCTCCA-ATCTAAG-ATCAGACCG
1 GCACGC-CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCAT-TCCATGTCTAAGCCCCAG-CCG
* * * * *** **
16150630 GACTGAGGGTTGTGGCAG-TAGGATCGGTAGCACACAG-AGGGGATCGGG-TCGATCCCGGACTT
63 AACCGAGGGTTGTGGCAGCGA-GACCAACAGCACACAGAAGGGGATCGGGCT-GATCCCCAACTT
* * * * *
16150692 GTGCATTCTGCCACTTCGGCCAGCTGAGCACCC
126 GTGCATTCTGCCTCTCCGTCAAGCTGAGCGCCC
* * * * *
16150725 GCACGCCCGTTTCATTGGTTGGCTTAGGCATAAGGAGTTCATTCCAAGTCTAAGCCCCAGTCGGA
1 GCACG-CCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAA
* * * * * * * **
16150790 TCGAGGGTTGTGGTAACGGGACCAACAGCACGCAGAAGGGGATCGGGATGATCCCCAGCTTGTAT
65 CCGAGGGTTGTGGCAGCGAGACCAACAGCACACAGAAGGGGATCGGGCTGATCCCCAACTTGTGC
* ** ** * *
16150855 ATTATGCCTCTCCAACCTGCTAAACGCCC
130 ATTCTGCCTCTCCGTCAAGCTGAGCGCCC
* * * * * *
16150884 GAACGCTCATTTCGTGGCTTGACTTAGGCATACGGAGTTCATTCC
1 GCACGC-CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCC
16150929 CAATTTAAGA
Statistics
Matches: 409, Mismatches: 95, Indels: 34
0.76 0.18 0.06
Matches are distributed among these distances:
157 9 0.02
158 212 0.52
159 124 0.30
160 37 0.09
161 27 0.07
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (158 bp):
GCACGCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGAAC
CGAGGGTTGTGGCAGCGAGACCAACAGCACACAGAAGGGGATCGGGCTGATCCCCAACTTGTGCA
TTCTGCCTCTCCGTCAAGCTGAGCGCCC
Found at i:16151115 original size:317 final size:316
Alignment explanation
Indices: 16150364--16151093 Score: 769
Period size: 317 Copynumber: 2.3 Consensus size: 316
16150354 AGACAGGGCT
* **
16150364 GATCCCCGACTTGTGCATTCTGCCTCTCTAGTC-GACTGAGTGCCCGCACGCCTATTTCGTGGGT
1 GATCCCCGGCTTGTGCATTCTGCCTCTCTAGTCAG-CTGAGCACCCGCACGCC-ATTTCGTGGGT
* * ** *
16150428 TGGCTTAGGCATAGGGA-TTCATT-CCATGTCTAAGTCCCAGGCAAACCGAGGGTTGTGGCAGCG
64 TGGCTTAGGCATAAGGAGTTCATTCCCA-GTCTAAGTCCCAGCCGGACCGAGGGTTGTGGCAACG
* * * * * **
16150491 AGACCGACAGCATGCAGAAGGGCACTGGGCTGATCCCCAACTTGCGCATTCTGCCTCTCCGTCAA
128 AGACCAACAGCACGCAGAAGGGCACTGGGATGATCCCCAACTTGCACATTATGCCTCTCCAACAA
* * * * *
16150556 GCTGAGCGCCCGTACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCTCCAATCTAAG
193 GCTAAACGCCCGAACACTCATTTCATGGCTTGACTTAGGCATACGGAGTTCATCTCCAATCTAAG
* * * ** * *
16150621 ATCAGACCGGACTGAGGGTTGTGGCAGTAGGATCGGTAGCACACAGAGGGGATCGGGTC
258 ATCAGACCGAACTGAGGGTTGTGACAGCAGGATCGACAGCACACAGAGGGGACCGAGTC
* * * * * *
16150680 GAT-CCCGGACTTGTGCATTCTGCCACT-TCGGCCAGCTGAGCACCCGCACGCCCGTTTCATTGG
1 GATCCCCGG-CTTGTGCATTCTGCCTCTCT-AGTCAGCTGAGCACCCGCACG-CCATTTCGTGGG
* * * * *
16150743 TTGGCTTAGGCATAAGGAGTTCATTCCAAGTCTAAGCCCCAGTCGGATCGAGGGTTGTGGTAACG
63 TTGGCTTAGGCATAAGGAGTTCATTCCCAGTCTAAGTCCCAGCCGGACCGAGGGTTGTGGCAACG
* * * * * *
16150808 GGACCAACAGCACGCAGAAGGGGA-TCGGGATGATCCCCAGCTTGTATATTATGCCTCTCCAACC
128 AGACCAACAGCACGCAGAAGGGCACT-GGGATGATCCCCAACTTGCACATTATGCCTCTCCAACA
* * * *
16150872 TGCTAAACGCCCGAACGCTCATTTCGTGGCTTGACTTAGGCATACGGAGTTCAT-TCCCAATTTA
192 AGCTAAACGCCCGAACACTCATTTCATGGCTTGACTTAGGCATACGGAGTTCATCT-CCAATCTA
* * *
16150936 AGATCAGATCGAACTGAGGGTT-TCGATAGCAGGATTGACAGCACGTA-AG-GGGGACCGAGTC
256 AGATCAGACCGAACTGAGGGTTGT-GACAGCAGGATCGACAGCAC--ACAGAGGGGACCGAGTC
** * * *
16150997 GATCCCCGGCTTACGCATTCTGTCTCTCTAGTCAGTTGAGCACCCGTACGCTCATTTCGTGGGTT
1 GATCCCCGGCTTGTGCATTCTGCCTCTCTAGTCAGCTGAGCACCCGCACGC-CATTTCGTGGGTT
*
16151062 GGCTTAGGCATACGGAGTTCATTCCCAGTCTA
65 GGCTTAGGCATAAGGAGTTCATTCCCAGTCTA
16151094 TGATTGGACC
Statistics
Matches: 337, Mismatches: 63, Indels: 27
0.79 0.15 0.06
Matches are distributed among these distances:
315 5 0.01
316 63 0.19
317 258 0.77
318 10 0.03
319 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (316 bp):
GATCCCCGGCTTGTGCATTCTGCCTCTCTAGTCAGCTGAGCACCCGCACGCCATTTCGTGGGTTG
GCTTAGGCATAAGGAGTTCATTCCCAGTCTAAGTCCCAGCCGGACCGAGGGTTGTGGCAACGAGA
CCAACAGCACGCAGAAGGGCACTGGGATGATCCCCAACTTGCACATTATGCCTCTCCAACAAGCT
AAACGCCCGAACACTCATTTCATGGCTTGACTTAGGCATACGGAGTTCATCTCCAATCTAAGATC
AGACCGAACTGAGGGTTGTGACAGCAGGATCGACAGCACACAGAGGGGACCGAGTC
Found at i:16151277 original size:26 final size:26
Alignment explanation
Indices: 16151240--16151292 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16151230 GTTGACTTAG
16151240 GCATACGAAGTTC-ATCCCTAGTCTAA
1 GCATACGAAGTTCGATCCC-AGTCTAA
* *
16151266 GCATACGGAGTTCGTTCCCAGTCTAA
1 GCATACGAAGTTCGATCCCAGTCTAA
16151292 G
1 G
16151293 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCGATCCCAGTCTAA
Found at i:16151857 original size:13 final size:13
Alignment explanation
Indices: 16151839--16151877 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
16151829 GCGCATTCTG
16151839 CCTCTCCGACCGA
1 CCTCTCCGACCGA
* *
16151852 CCTCTCCAACCGG
1 CCTCTCCGACCGA
16151865 CCTCTCCGACCGA
1 CCTCTCCGACCGA
16151878 ATGAGCACCT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.15, C:0.54, G:0.15, T:0.15
Consensus pattern (13 bp):
CCTCTCCGACCGA
Found at i:16151951 original size:26 final size:26
Alignment explanation
Indices: 16151915--16151967 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16151905 GTTGACTTAG
*
16151915 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
16151941 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
16151967 G
1 G
16151968 TTCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:16152983 original size:26 final size:26
Alignment explanation
Indices: 16152953--16153005 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
16152943 GTTGACATAG
16152953 GCATACAG-TGTTCA-TCGCCAGTCTAA
1 GCATACAGAT-TTCATTC-CCAGTCTAA
*
16152979 GCATACGGATTTCATTCCCAGTCTAA
1 GCATACAGATTTCATTCCCAGTCTAA
16153005 G
1 G
16153006 ATCGAATCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGATTTCATTCCCAGTCTAA
Found at i:16153454 original size:159 final size:160
Alignment explanation
Indices: 16153053--16153484 Score: 426
Period size: 159 Copynumber: 2.7 Consensus size: 160
16153043 AGCACGTAGA
* * * * * * * * *
16153053 GGGGACCGAGCCGATCCTCGGCTTGCGCATTCTGCCTC-TCCAGCTGGCTGAGCGCCCGCACACC
1 GGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTCGA-CCGGTTGAGCGCCCGCACGCT
* * *
16153117 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCTCAGCCGGACTGACG
65 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGTCTAAGCATCAGCCGGACCGACG
* * *
16153181 GTTGTGGTAGCGAGACCGGCAGCACGCAAAG
130 GTTGTGGCAGCGAGACCGACAGCACACAAAG
* * * * * * * * * *
16153212 GGGGACCGGGTCGATCCCCGACCTGCGCATTATGCCTCTCCGACCTGTTCAACACTCGAATGCTC
1 GGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTCGACCGGTTGAGCGCCCGCACGCTC
* * * * * * *
16153277 ATTTCGTGTGTTGACTTAGGCATACGGAGTTGATTCCCA-GTCTAAG-ATCGGACCGGACCGAGG
66 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGTCTAAGCATCAG-CCGGACCGACG
* * *
16153340 GTTGTGGCAGC-AGGATCGACAGCATACAAGG
130 GTTGTGGCAGCGA-GACCGACAGCACACAAAG
* * * *
16153371 GGGGATCGGGTCGGTCCCCGGCTTGCGCATTTTGCCTCTTCGACCGGTTGAGCGCCCGCACGCTT
1 GGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTCGACCGGTTGAGCGCCCGCACGCTC
* *
16153436 GTTTCATGGGTTGGCTTAGGCGTACGGAGTTCATT-CCATTTCTAAGCAT
66 GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGTCTAAGCAT
16153485 ACGGAGTTCA
Statistics
Matches: 211, Mismatches: 56, Indels: 11
0.76 0.20 0.04
Matches are distributed among these distances:
158 7 0.03
159 197 0.93
160 7 0.03
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (160 bp):
GGGGACCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTCGACCGGTTGAGCGCCCGCACGCTC
GTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGTCTAAGCATCAGCCGGACCGACGG
TTGTGGCAGCGAGACCGACAGCACACAAAG
Found at i:16153488 original size:26 final size:26
Alignment explanation
Indices: 16153458--16153533 Score: 116
Period size: 26 Copynumber: 2.9 Consensus size: 26
16153448 GGCTTAGGCG
*
16153458 TACGGAGTTCATTCCATTTCTAAGCA
1 TACGGAGTTCATTCCATGTCTAAGCA
16153484 TACGGAGTTCATTCCATGTCTAAGCA
1 TACGGAGTTCATTCCATGTCTAAGCA
* * *
16153510 TACAGAGTTCATTCTATGTATAAG
1 TACGGAGTTCATTCCATGTCTAAG
16153534 ATTAGACTGG
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.34
Consensus pattern (26 bp):
TACGGAGTTCATTCCATGTCTAAGCA
Found at i:16154775 original size:26 final size:26
Alignment explanation
Indices: 16154745--16154797 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16154735 GTTGACTTAG
16154745 GCATATAG-AGTTCATCCCTAGTCTAA
1 GCATA-AGAAGTTCATCCCTAGTCTAA
* *
16154771 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATAAGAAGTTCATCCCTAGTCTAA
16154797 G
1 G
16154798 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATAAGAAGTTCATCCCTAGTCTAA
Found at i:16155114 original size:159 final size:158
Alignment explanation
Indices: 16154813--16155103 Score: 341
Period size: 159 Copynumber: 1.8 Consensus size: 158
16154803 ATCAGACCGA
* * * * *
16154813 GGGTTGCGGCAGCAGGATCGGTAGCACATAGGGGGGACCGGATCGATCCTCGGCTTGTGCATTCT
1 GGGTTGCGGCAGCAGGACCAGTAGCACATAGGGGGGACCGGATCGATCCTCGACTTGCGCATTAT
* * * * * * ** **
16154878 TCCTCTCCAGGTGGCTGAGCGCTCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCA
66 GCCTCTCCAGCTGGCTCAACGCCCGAACGCCCATTTCATGGGTTAACTTAGGCATACAGAGTTCA
16154943 TTCCATGTCTAAGCCCCAACCAGACTAG
131 TTCCATGTCTAAGCCCCAACCAGACTAG
* * * * *
16154971 GGGTTGTGGCAGCGGGACCAGTAGCA-ATCAGAGGGGGATCGGGTCGATCCTCGACTTGCGTATT
1 GGGTTGCGGCAGCAGGACCAGTAGCACAT-AG-GGGGGACCGGATCGATCCTCGACTTGCGCATT
* * **
16155035 ATGCCTCTCCAGCTGGCTCAACGCCCGAACGCTCGTTTTGTGGGTTAACTTAGGCATACAGAGTT
64 ATGCCTCTCCAGCTGGCTCAACGCCCGAACGCCCATTTCATGGGTTAACTTAGGCATACAGAGTT
16155100 CATT
129 CATT
16155104 TCTAGTCTAA
Statistics
Matches: 107, Mismatches: 24, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
157 2 0.02
158 24 0.22
159 81 0.76
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (158 bp):
GGGTTGCGGCAGCAGGACCAGTAGCACATAGGGGGGACCGGATCGATCCTCGACTTGCGCATTAT
GCCTCTCCAGCTGGCTCAACGCCCGAACGCCCATTTCATGGGTTAACTTAGGCATACAGAGTTCA
TTCCATGTCTAAGCCCCAACCAGACTAG
Found at i:16155134 original size:159 final size:157
Alignment explanation
Indices: 16154771--16155134 Score: 333
Period size: 159 Copynumber: 2.3 Consensus size: 157
16154761 CCTAGTCTAA
* * * *
16154771 GCATACGAAGTTCATTCCTAGTCTAAGATCGGA-TCAGACCGAGGGTTGCGGCAGCAGGATCGGT
1 GCATACG-AGTTCATTTCTAGTCTAAGATCAGACT-AGACCGAGGGTTGCGGCAGCAGGACCAGT
* * * * * * *
16154835 AGCACATAGGGGGGACCGGATCGATCCTCGGCTTGTGCATTCTTCCTCTCCAGGTGGCTGAGCGC
64 AGCACATAGGGGGGACCGGATCGATCCTCGACTTGCGCATTATGCCTCTCCAGCTGGCTCAACGC
* * **
16154900 TCGCACGCCCATTTCATGGGTTGGCTTAG
129 CCGAACGCCCATTTCATGGGTTAACTTAG
* * ** * * * *
16154929 GCATAGGGAGTTCA-TTCCATGTCTAAGCCCCA-ACCAGA-CTAGGGGTTGTGGCAGCGGGACCA
1 GCATA-CGAGTTCATTTCTA-GTCTAAG-ATCAGACTAGACCGA-GGGTTGCGGCAGCAGGACCA
* * *
16154991 GTAGCA-ATCAGAGGGGGATCGGGTCGATCCTCGACTTGCGTATTATGCCTCTCCAGCTGGCTCA
62 GTAGCACAT-AG-GGGGGACCGGATCGATCCTCGACTTGCGCATTATGCCTCTCCAGCTGGCTCA
* * **
16155055 ACGCCCGAACGCTCGTTTTGTGGGTTAACTTAG
125 ACGCCCGAACGCCCATTTCATGGGTTAACTTAG
*
16155088 GCATACAGAGTTCATTTCTAGTCTAAGATCAGACTGGACCGAGGGTT
1 GCATAC-GAGTTCATTTCTAGTCTAAGATCAGACTAGACCGAGGGTT
16155135 ACAGTAGCAC
Statistics
Matches: 158, Mismatches: 37, Indels: 21
0.73 0.17 0.10
Matches are distributed among these distances:
157 7 0.04
158 48 0.30
159 97 0.61
160 6 0.04
ACGTcount: A:0.21, C:0.25, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACGAGTTCATTTCTAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCAGGACCAGTAG
CACATAGGGGGGACCGGATCGATCCTCGACTTGCGCATTATGCCTCTCCAGCTGGCTCAACGCCC
GAACGCCCATTTCATGGGTTAACTTAG
Found at i:16155480 original size:26 final size:26
Alignment explanation
Indices: 16155444--16155496 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16155434 GTTGACTTAG
*
16155444 GCATAAGGAGTTCATCCCCAGTCTAA
1 GCATAAGGAGTTCATCCCAAGTCTAA
* *
16155470 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATAAGGAGTTCATCCCAAGTCTAA
16155496 G
1 G
16155497 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATAAGGAGTTCATCCCAAGTCTAA
Found at i:16155998 original size:159 final size:157
Alignment explanation
Indices: 16155470--16155999 Score: 487
Period size: 159 Copynumber: 3.3 Consensus size: 157
16155460 CCCAGTCTAA
* * * * **
16155470 GCATACGGAGTTCATTCCAAGTCTAAGATCGGATCGGACTGAAGGTTGCGACAGTAGGATCTG-C
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACTGAAGGTTGCGGTAGTAGGATC-GAC
** * *
16155534 AGCATGCAGAAGGGACCGGGCTGATCCCCAGCTTACGCATTCTACCTCTCCAGTC-GACTCAGCG
65 AGCATGCAGGGGGGACCGGGCTG-TACCCAGCTTACGCATTCTACCTCTCCAGCCAG-CTCAGCG
* * *
16155598 CCCGTACACCCATTTCGTGGGTTGGCTTAG
128 CCCGAACGCTCATTTCGTGGGTTGGCTTAG
* * * ** * * ** *
16155628 GCATAGGGAATTCATTCCATA-TCTATGCCCCA-ACCAGACTGAGGGTTGTGGTAGCGGGACCGA
1 GCATACGGAGTTCATTCC-TAGTCTAAG-ATCAGACCAGACTGAAGGTTGCGGTAGTAGGATCGA
* * * * * * *
16155691 CAGCATGCAGAGGGGGATCGAGCCG-ATCCCTAACTTGCACACTCTACCTCTCCAGCCAGCTCAG
64 CAGCATGCAG-GGGGGACCGGGCTGTA-CCC-AGCTTACGCATTCTACCTCTCCAGCCAGCTCAG
* *
16155755 CGCCCAAACGCTCATTTCGTGGGTTGACTTAG
126 CGCCCGAACGCTCATTTCGTGGGTTGGCTTAG
* * * * * *
16155787 GCATACGAACTTCATTCCCAGTCTAAGATCGGATCAGACTGAAGGTTACGGTAGTAGGATCGACA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACTGAAGGTTGCGGTAGTAGGATCGACA
* * * *
16155852 GCATGCAGCGGGGGACCGGGCTAGTACCCAGTTTACGTATTCTACCTCTCCAACCAGCTGAGCGC
66 GCATGCAG-GGGGGACCGGGCT-GTACCCAGCTTACGCATTCTACCTCTCCAGCCAGCTCAGCGC
* * * *
16155917 CCGCATGCTCGTTTCATGGGTTGGCTTAG
129 CCGAACGCTCATTTCGTGGGTTGGCTTAG
* *
16155946 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGA-TCGAGGGTTGCGGTAG
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACT-GAAGGTTGCGGTAG
16156000 CAGGGCCAGC
Statistics
Matches: 287, Mismatches: 73, Indels: 23
0.75 0.19 0.06
Matches are distributed among these distances:
157 1 0.00
158 57 0.20
159 223 0.78
160 5 0.02
161 1 0.00
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACTGAAGGTTGCGGTAGTAGGATCGACA
GCATGCAGGGGGGACCGGGCTGTACCCAGCTTACGCATTCTACCTCTCCAGCCAGCTCAGCGCCC
GAACGCTCATTTCGTGGGTTGGCTTAG
Found at i:16156162 original size:26 final size:26
Alignment explanation
Indices: 16156115--16156167 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16156105 GTTAACTTAG
*
16156115 GCATACGGAGTTCATCTGCAGTCTAA
1 GCATACGGAGTTCATCTCCAGTCTAA
*
16156141 GCATATGGAGTTCAT-TCCCAGTCTAA
1 GCATACGGAGTTCATCT-CCAGTCTAA
16156167 G
1 G
16156168 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCTCCAGTCTAA
Found at i:16156624 original size:26 final size:26
Alignment explanation
Indices: 16156595--16156660 Score: 87
Period size: 26 Copynumber: 2.5 Consensus size: 26
16156585 GTTGACTTAG
* * **
16156595 GCATACAGAGTTTAACCTTAGTCTAA
1 GCATACGGAGTTCAACCCCAGTCTAA
*
16156621 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCAACCCCAGTCTAA
16156647 GCATACGGAGTTCA
1 GCATACGGAGTTCA
16156661 TTTCCCAGTC
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCAACCCCAGTCTAA
Found at i:16156661 original size:26 final size:27
Alignment explanation
Indices: 16156614--16156670 Score: 98
Period size: 26 Copynumber: 2.1 Consensus size: 27
16156604 GTTTAACCTT
16156614 AGTCTAAGCATACGGAGTTCA-TCCCC
1 AGTCTAAGCATACGGAGTTCATTCCCC
*
16156640 AGTCTAAGCATACGGAGTTCATTTCCC
1 AGTCTAAGCATACGGAGTTCATTCCCC
16156667 AGTC
1 AGTC
16156671 CAAGATCAGA
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 21 0.72
27 8 0.28
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (27 bp):
AGTCTAAGCATACGGAGTTCATTCCCC
Found at i:16157692 original size:26 final size:26
Alignment explanation
Indices: 16157656--16157708 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16157646 GTTGGCTTAG
16157656 GCATACAGAGTTCATTC-CATGTCTAA
1 GCATACAGAGTTCATTCTCA-GTCTAA
16157682 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCTCAGTCTAA
16157708 G
1 G
16157709 ATCTGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCTCAGTCTAA
Found at i:16157901 original size:26 final size:26
Alignment explanation
Indices: 16157865--16157917 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16157855 GTTGACTTAG
*
16157865 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTGCATTCCC-AGTCTAA
*
16157891 GCATATGGAGTGCATTCCCAGTCTAA
1 GCATACGGAGTGCATTCCCAGTCTAA
16157917 G
1 G
16157918 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTGCATTCCCAGTCTAA
Found at i:16158581 original size:26 final size:26
Alignment explanation
Indices: 16158551--16158603 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16158541 GTTGACTTAG
16158551 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
16158577 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16158603 G
1 G
16158604 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16158635 original size:196 final size:197
Alignment explanation
Indices: 16158247--16158635 Score: 487
Period size: 196 Copynumber: 2.0 Consensus size: 197
16158237 AGGGTTGCGA
* ** * ** *
16158247 TAGCAAGATCGATAGCATGTAAAGGGGGATTGGGTCGGTCCCTGGCTTGCGCATTCTGCCTCTCC
1 TAGCAAGATCGACAGCATGTAAAGGGGGACCGGGTCGATCCCCAGCTTACGCATTCTGCCTCTCC
* * * * * *
16158312 GGCTGGCTGAGCGCCCGCACGCTTGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGT
66 GACCGGCTAACCGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATAAGGAGTTCATCCCATGT
* * * * ** **
16158377 CTAAGCATACGGAGTTCATTCCCAGTCAAAAATCGGATCAGACCGAGGGTTGTGGTAGCAGGACC
131 CTAAGCATACAGAGTTCATTCCCAGTCAAAAATCAGACCAGACCGAGGATTACGACAGCAGGACC
16158442 AG
196 AG
* * *
16158444 TAGCACGATCGACAGCATG-CAAGGGGGACCGGGTCGATCCCCAGCTTATGCATTCTGCCTCTCC
1 TAGCAAGATCGACAGCATGTAAAGGGGGACCGGGTCGATCCCCAGCTTACGCATTCTGCCTCTCC
*
16158508 GACCGGCTAACCGCTCGCACGCTTGTTTCATGGGTTGACTTAGGCATACA-GAGTTCATCCCCA-
66 GACCGGCTAACCGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATA-AGGAGTTCAT-CCCAT
* * *
16158571 GTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGATTACGACAGCAGGA
129 GTCTAAGCATACAGAGTTCATTCCCAGTCAAAAATCAGACCAGACCGAGGATTACGACAGCAGGA
16158636 TCGACAGCAC
Statistics
Matches: 162, Mismatches: 28, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
196 141 0.87
197 21 0.13
ACGTcount: A:0.23, C:0.26, G:0.28, T:0.23
Consensus pattern (197 bp):
TAGCAAGATCGACAGCATGTAAAGGGGGACCGGGTCGATCCCCAGCTTACGCATTCTGCCTCTCC
GACCGGCTAACCGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATAAGGAGTTCATCCCATGT
CTAAGCATACAGAGTTCATTCCCAGTCAAAAATCAGACCAGACCGAGGATTACGACAGCAGGACC
AG
Found at i:16160498 original size:26 final size:26
Alignment explanation
Indices: 16160447--16160499 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16160437 GTTGGCTTAC
*
16160447 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGCCTAA
16160473 GCATACGGAGTTCATTCTC-TGCCTAA
1 GCATACGGAGTTCATTC-CATGCCTAA
16160499 G
1 G
16160500 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGCCTAA
Found at i:16160662 original size:26 final size:26
Alignment explanation
Indices: 16160632--16160684 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16160622 GTTTGCTTAG
16160632 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
16160658 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16160684 G
1 G
16160685 ATCAGACCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16160859 original size:26 final size:26
Alignment explanation
Indices: 16160829--16160881 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16160819 GTTGAATTAG
*
16160829 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
16160855 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16160881 G
1 G
16160882 ATTAGAACGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16161240 original size:159 final size:158
Alignment explanation
Indices: 16160862--16161358 Score: 381
Period size: 158 Copynumber: 3.1 Consensus size: 158
16160852 TAAGCATACA
* * * * * * *
16160862 GAGTTCATTCCCAGTCTAAGATTAGAACGGACCGAGGGTTACGGCAGTAGGATCGGTAGCACGCA
1 GAGTTCATTCCCAGTCTAAGATCAAAACGGACTGAGGGTTGCGGTAGCAGGATCGATAGCACGCA
* * ** * * *
16160927 GGGGGGATCGGGCTGATCCCCGGCTTGTGCATTCTGCCACTCCGATCGGTTGAGCACCCACACGC
66 GAGGGGATCGAGCTGATCCCCGGCTTACGCATTATGCCACTCCAATCGATTGAGCACCCACACGC
* * *
16160992 CCGTTTCGTGGCTTGGCTTAGGCACAGG
131 CCGTTTCATGGCTTGACTTAGGCAAAGG
* ** * ** * * * * * *
16161020 GAGTTCATT-CCATGTTTAAGCCCCAGTCGGACTAAGGGTTGTGGTAGCGGGACCGACAGCACGT
1 GAGTTCATTCCCA-GTCTAAGATCAAAACGGACTGAGGGTTGCGGTAGCAGGATCGATAGCACGC
* * ** * *
16161084 AGAAGGGGATCGAGCTGATCCTCGGCTTACGCATTATGCCTCTTTAATCGATTTAGCACCTGA-A
65 AG-AGGGGATCGAGCTGATCCCCGGCTTACGCATTATGCCACTCCAATCGATTGAGCACC-CACA
* * * *
16161148 CGCTCGTTTCATGGGTTGATTTAGGCAAATG
128 CGCCCGTTTCATGGCTTGACTTAGGCAAAGG
* *
16161179 GAGTTCATTCCCAGTCTAAGATCAAAACGGACTGAGGGTTGCGGTAACAGGATCGATAGCACACA
1 GAGTTCATTCCCAGTCTAAGATCAAAACGGACTGAGGGTTGCGGTAGCAGGATCGATAGCACGCA
* * ** * * * * *
16161244 -AGAGGGACCG-GACCGATCCCCGGCTTGTGCATTATACCTCTCCAGTCGGTTGAGCGCCCACAC
66 GAG-GGGATCGAG-CTGATCCCCGGCTTACGCATTATGCCACTCCAATCGATTGAGCACCCACAC
** * * * * * * **
16161307 GTTCATTTTATGGGTTGGCTTAGCCATACA
129 GCCCGTTTCATGGCTTGACTTAGGCAAAGG
16161337 GAGTTCATTCCCAGTCTAAGAT
1 GAGTTCATTCCCAGTCTAAGAT
16161359 TGGACCGGAC
Statistics
Matches: 257, Mismatches: 75, Indels: 14
0.74 0.22 0.04
Matches are distributed among these distances:
157 7 0.03
158 129 0.50
159 117 0.46
160 4 0.02
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.25
Consensus pattern (158 bp):
GAGTTCATTCCCAGTCTAAGATCAAAACGGACTGAGGGTTGCGGTAGCAGGATCGATAGCACGCA
GAGGGGATCGAGCTGATCCCCGGCTTACGCATTATGCCACTCCAATCGATTGAGCACCCACACGC
CCGTTTCATGGCTTGACTTAGGCAAAGG
Found at i:16161860 original size:185 final size:184
Alignment explanation
Indices: 16161491--16161884 Score: 434
Period size: 185 Copynumber: 2.1 Consensus size: 184
16161481 CATTTCATGA
* *
16161491 GTTGACTTAGGCATACGGAGTTCGTCCCTAATCTAAGCATACAGAGTTCATTCCCAGTCTAAGAT
1 GTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACAGAGTTCATTCCCAGTCTAAGAT
* * * *
16161556 CAGACCGAACCGAGGGTTGCGACAGCAGGATCGATAGCATGCAAAGGGGACCGGATCGATCCCTC
66 CAGACCGAACCGAGGGTTACGACAGCAGGATCGACAGCACGCAAAGGGGACCGGACCGATCCCTC
* * * *
16161621 ACTTACGCATTCTACCTCTTCAGTCGACTGAGCACCCGCAAGCTCGTTTTGTGG
131 ACCTACGCATTCTACCTCTCCAGTCGACTGAGCACCCGCAAGCTCATGTTGTGG
* *
16161675 GTTGACTTAGGCATACAGAGTTCATCCCCAATCTAAGCATACGGAGTTCATTTCCCAGTCTAAGA
1 GTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACAGAGTTCA-TTCCCAGTCTAAGA
* ** * * ** * *
16161740 TC-GAACTGGGCTGAGGGTTAC-AGGAGCAGGATCGACAGCACGCAGGGGGGATCGGACCGATTC
65 TCAG-ACCGAACCGAGGGTTACGA-CAGCAGGATCGACAGCACGCAAAGGGGACCGGACCGATCC
** ** * * ** * *
16161803 CTTGCCTGTGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCGCACG-TCCATGTTGTGG
128 CTCACCTACGCATTCTACCTCTCCAGTCGACTGAGCACCCGCAAGCT-CATGTTGTGG
* *
16161860 GTTGGCTTAGGCATAGGGAGTTCAT
1 GTTGACTTAGGCATACGGAGTTCAT
16161885 TCCATGTCTA
Statistics
Matches: 172, Mismatches: 34, Indels: 7
0.81 0.16 0.03
Matches are distributed among these distances:
184 49 0.28
185 123 0.72
ACGTcount: A:0.23, C:0.26, G:0.27, T:0.24
Consensus pattern (184 bp):
GTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACAGAGTTCATTCCCAGTCTAAGAT
CAGACCGAACCGAGGGTTACGACAGCAGGATCGACAGCACGCAAAGGGGACCGGACCGATCCCTC
ACCTACGCATTCTACCTCTCCAGTCGACTGAGCACCCGCAAGCTCATGTTGTGG
Found at i:16162132 original size:857 final size:862
Alignment explanation
Indices: 16160609--16162213 Score: 1967
Period size: 857 Copynumber: 1.9 Consensus size: 862
16160599 ACGGTCGTAT
* * * *
16160609 GCTCGTTTCATGGGTTTGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACGAAGTTCATT
1 GCTCATTTCATGAGTTTGCTTAGGCATACGAAGTTCATCCCATATCTAAGCATACGAAGTTCATT
* *
16160674 CCCAGTCTAAGATCAGACCGAATCGATGGTTTCGGTGGCAAGACCAGCAACAGGATCGGTAGCAT
66 CCCAGTCTAAGATCAGACCGAACCGA-GG--T-GGTGGC-AGACCAG--ACAGGATCGATAGCAT
* * * * * *
16160739 GCAGAGGAGGACCGAGCCAATCCCCGGCTTACGTATTCTACCTCTCCAATCGGCTAAGCGCCCGT
124 GCAAAGGAGGACCGAGCCAATCCCCGACTTACGCATTCTACCTCTCCAATCGACTAAGCACCCGC
* * *
16160804 ATGCTCATTTCATGGGTTGAATTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCA
189 AAGCTCATTTCATGGGTTGAATTAGGCATACAGAGTTCATCCCCAATCTAAGCATACAGAGTTCA
* **
16160869 TTCCCAGTCTAAGATTAGAACGGACCGAGGGTTACGGCAGTAGGATCGGTAGCACGCAGGGGGGA
254 TTCCCAGTCTAAGATTAGAACGGACCGAGGGTTACGGCAGCAGGATCGACAGCACGCAGGGGGGA
* * * *
16160934 TCGGGCTGATCCCCGGCTTGTGCATTCTGCCACTCCGATCGGTTGAGCACCCACACGCCCGTTTC
319 TCGGACCGATCCCCGGCCTGTGCATTCTGCCACTCCGATCGGTTGAGCACCCACACGCCCATTTC
* * *
16160999 GTGGCTTGGCTTAGGCACAGGGAGTTCATTCCATGTTTAAGCCCCAGTCGGACTAAGGGTTGTGG
384 GTGGCTTGGCTTAGGCACAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTGTGG
* * **
16161064 TAGCGGGACCGACAGCACGTAGAAGGGGATCGAGCTGATCCTCGGCTTACGCATTATGCCTCTTT
449 TAGCGAGACCGACAGCACGCAGAAGGGGATCGAGCTGATCCTCGGCTTACGCATTATGCCTCTCC
* * * * * *
16161129 AATCGATTTAGCACCTGAACGCTCGTTTCATGGGTTGATTTAGGCAAATGGAGTTCATTCCCAGT
514 AATCGACTCAGCACCCGAACGCTCGGTTCATGGGTTAACTTAGGCAAATGGAGTTCATTCCCAGT
* * *
16161194 CTAAGATCAAAACGGACTGAGGGTTGCGGTAACAGGATCGATAGCACACAAGAGGGACCGGACCG
579 CTAAGATCAAAACGGACTGAGGGTTGCAGTAACAGGATCGATAGCACACAAGAGGGACAGGACCA
* *
16161259 ATCCCCGGCTTGTGCATTATACCTCTCC-AGTCGGTTGAGCGCCCACACGTTCATTTTATGGGTT
644 ATCCCCGGCTTGTGCATTATACCTCTCCGA-TCGGTTGAGCGCCCACACGCTCATTTCATGGGTT
16161323 GGCTTAGCCATACAGAGTTCATTCCCA-GTCTAAGATTGGACCGGACCAAGGGTTGTGATAGCAG
708 GGCTTAGCCATACAGAGTTCATT-CCATGTCTAAGATTGGACCGGACCAAGGGTTGTGATAGCAG
16161387 GACCAGCAGCAGGATCAGCAGCATATAGTGGGTGACCGGGCCAATCCCCGGCTTGTGCATTTTGC
772 GACCAGCAGCAGGATCAGCAGCATATAGTGGGTGACCGGGCCAATCCCCGGCTTGTGCATTTTGC
16161452 CTCTCCGGTCGACTGAACGCTTGCAC
837 CTCTCCGGTCGACTGAACGCTTGCAC
* *
16161478 GCTCATTTCATGAG-TTGACTTAGGCATACGGAGTTCGTCCC-TAATCTAAGCATAC-AGAGTTC
1 GCTCATTTCATGAGTTTG-CTTAGGCATACGAAGTTCATCCCAT-ATCTAAGCATACGA-AGTTC
*
16161540 ATTCCCAGTCTAAGATCAGACCGAACCGA-G-GGTTGC-GA-CAG-CAGGATCGATAGCATGCAA
63 ATTCCCAGTCTAAGATCAGACCGAACCGAGGTGGTGGCAGACCAGACAGGATCGATAGCATGCAA
* * * * *
16161600 AGG-GGACCG-GATCGATCCCTC-ACTTACGCATTCTACCTCTTCAGTCGACTGAGCACCCGCAA
128 AGGAGGACCGAG-CCAATCCC-CGACTTACGCATTCTACCTCTCCAATCGACTAAGCACCCGCAA
* ** * *
16161662 GCTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAATCTAAGCATACGGAGTTCATT
191 GCTCATTTCATGGGTTGAATTAGGCATACAGAGTTCATCCCCAATCTAAGCATACAGAGTTCA-T
* * *
16161727 TCCCAGTCTAAGA-TCGAACTGGGCTGAGGGTTACAGG-AGCAGGATCGACAGCACGCAGGGGGG
255 TCCCAGTCTAAGATTAGAAC-GGACCGAGGGTTAC-GGCAGCAGGATCGACAGCACGCAGGGGGG
* ** * * * * *
16161790 ATCGGACCGATTCCTTGCCTGTGCATTCTGCCTCTCCGGTCGGTTGAGCGCCCGCACGTCCATGT
318 ATCGGACCGATCCCCGGCCTGTGCATTCTGCCACTCCGATCGGTTGAGCACCCACACGCCCAT-T
* * * *
16161855 T-GTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGTACCGAGGGTTGT
382 TCGTGGCTTGGCTTAGGCACAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTGT
* * * *
16161919 GGTAGCGATACTGACAGCACGCAGAGGGGGATCGAG-TCGATCC-CTGGCTTACGCATTATGTCT
447 GGTAGCGAGACCGACAGCACGCAGAAGGGGATCGAGCT-GATCCTC-GGCTTACGCATTATGCCT
* * ** * * *
16161982 CTCCGATCGGCTCAGTGCCCGAACGCTCGGTTCGTTGGTTAACTTAGGCATATGGAGTTCATTCC
510 CTCCAATCGACTCAGCACCCGAACGCTCGGTTCATGGGTTAACTTAGGCAAATGGAGTTCATTCC
* * * * *
16162047 TAGTCTAAGATC-AGACTGGA-TCGAGGGTTGCAG-AAGTAGGATCGATAGCACACAGGGGGGAT
575 CAGTCTAAGATCAAAAC-GGACT-GAGGGTTGCAGTAA-CAGGATCGATAGCACACAAGAGGGA-
** * * * * * * *
16162109 CAGG-CCAATCCTGGGCTTGTGCATTCTGCCTCTTCGATTGGTTGAGCGCTCGCACGCTCGTTTC
636 CAGGACCAATCCCCGGCTTGTGCATTATACCTCTCCGATCGGTTGAGCGCCCACACGCTCATTTC
* * **
16162173 GTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAG
701 ATGGGTTGGCTTAGCCATACAGAGTTCATTCCATGTCTAAG
16162214 CATACGGAGT
Statistics
Matches: 622, Mismatches: 97, Indels: 46
0.81 0.13 0.06
Matches are distributed among these distances:
855 1 0.00
856 116 0.19
857 405 0.65
858 8 0.01
860 3 0.00
861 2 0.00
863 5 0.01
867 1 0.00
868 5 0.01
869 76 0.12
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.25
Consensus pattern (862 bp):
GCTCATTTCATGAGTTTGCTTAGGCATACGAAGTTCATCCCATATCTAAGCATACGAAGTTCATT
CCCAGTCTAAGATCAGACCGAACCGAGGTGGTGGCAGACCAGACAGGATCGATAGCATGCAAAGG
AGGACCGAGCCAATCCCCGACTTACGCATTCTACCTCTCCAATCGACTAAGCACCCGCAAGCTCA
TTTCATGGGTTGAATTAGGCATACAGAGTTCATCCCCAATCTAAGCATACAGAGTTCATTCCCAG
TCTAAGATTAGAACGGACCGAGGGTTACGGCAGCAGGATCGACAGCACGCAGGGGGGATCGGACC
GATCCCCGGCCTGTGCATTCTGCCACTCCGATCGGTTGAGCACCCACACGCCCATTTCGTGGCTT
GGCTTAGGCACAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGTAGCGAG
ACCGACAGCACGCAGAAGGGGATCGAGCTGATCCTCGGCTTACGCATTATGCCTCTCCAATCGAC
TCAGCACCCGAACGCTCGGTTCATGGGTTAACTTAGGCAAATGGAGTTCATTCCCAGTCTAAGAT
CAAAACGGACTGAGGGTTGCAGTAACAGGATCGATAGCACACAAGAGGGACAGGACCAATCCCCG
GCTTGTGCATTATACCTCTCCGATCGGTTGAGCGCCCACACGCTCATTTCATGGGTTGGCTTAGC
CATACAGAGTTCATTCCATGTCTAAGATTGGACCGGACCAAGGGTTGTGATAGCAGGACCAGCAG
CAGGATCAGCAGCATATAGTGGGTGACCGGGCCAATCCCCGGCTTGTGCATTTTGCCTCTCCGGT
CGACTGAACGCTTGCAC
Found at i:16162192 original size:158 final size:155
Alignment explanation
Indices: 16161711--16162213 Score: 455
Period size: 158 Copynumber: 3.2 Consensus size: 155
16161701 CCCAATCTAA
* * * * *
16161711 GCATACGGAGTTCATTTCCCA-GTCTAAGATC-GAACTGGGCTGAGGGTTACAGGAGCAGGATCG
1 GCATATGGAGTTCA-TT-CCATGTCTAAGATCAG-ACTGGACCGAGGGTTGCA-GAGTAGGATCG
* * * *
16161774 ACAGCACGCAGGGGGGATCGGACCGATTCCTTGCCTGTGCATTCTGCCTCTCCGGTCGGTTGAGC
62 ACAGCACGCAGGGGGGATCGG-CC-AATCCTGGCTTGTGCATTCTGCCTCTCCGATCGGTTGAGC
*
16161839 GCCCGCACG-TCCATGTT-GTGGGTTGGCTTAG
125 GCCCGCACGCT-CGT-TTCGTGGGTTGGCTTAG
* ** * * *
16161870 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCGTACCGAGGGTTG-TG-GTAGCGATACTG
1 GCATATGGAGTTCATTCCATGTCTAAG-ATCAGACTGGACCGAGGGTTGCAGAGTAG-GAT-C-G
* * ** * * * *
16161932 ACAGCACGCAGAGGGGGATCGAGTCGATCCCTGGCTTACGCATTATGTCTCTCCGATCGGCTCAG
62 ACAGCACGCAG-GGGGGATCG-GCCAAT-CCTGGCTTGTGCATTCTGCCTCTCCGATCGGTTGAG
* * * * **
16161997 TGCCCGAACGCTCGGTTCGTTGGTTAACTTAG
124 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
16162029 GCATATGGAGTTCATTCC-TAGTCTAAGATCAGACTGGATCGAGGGTTGCAGAAGTAGGATCGAT
1 GCATATGGAGTTCATTCCAT-GTCTAAGATCAGACTGGACCGAGGGTTGCAG-AGTAGGATCGAC
* * *
16162093 AGCACACAGGGGGGATCAGGCCAATCCTGGGCTTGTGCATTCTGCCTCTTCGATTGGTTGAGCGC
64 AGCACGCAGGGGGGATC-GGCCAATCCT-GGCTTGTGCATTCTGCCTCTCCGATCGGTTGAGCGC
*
16162158 TCGCACGCTCGTTTCGTGGGTTGGCTTAG
127 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
16162187 GCATATGGAGTTCATTCCATGTCTAAG
1 GCATATGGAGTTCATTCCATGTCTAAG
16162214 CATACGGAGT
Statistics
Matches: 270, Mismatches: 55, Indels: 39
0.74 0.15 0.11
Matches are distributed among these distances:
155 3 0.01
156 4 0.01
157 7 0.03
158 125 0.46
159 119 0.44
160 5 0.02
161 3 0.01
162 4 0.01
ACGTcount: A:0.19, C:0.24, G:0.31, T:0.26
Consensus pattern (155 bp):
GCATATGGAGTTCATTCCATGTCTAAGATCAGACTGGACCGAGGGTTGCAGAGTAGGATCGACAG
CACGCAGGGGGGATCGGCCAATCCTGGCTTGTGCATTCTGCCTCTCCGATCGGTTGAGCGCCCGC
ACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:16162223 original size:26 final size:26
Alignment explanation
Indices: 16162187--16162239 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16162177 GTTGGCTTAG
*
16162187 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16162213 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16162239 G
1 G
16162240 ATTAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16162413 original size:26 final size:26
Alignment explanation
Indices: 16162384--16162436 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16162374 TTTGGCTTAG
*
16162384 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16162410 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16162436 G
1 G
16162437 AGTTTATGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16162525 original size:11 final size:11
Alignment explanation
Indices: 16162506--16162543 Score: 67
Period size: 11 Copynumber: 3.5 Consensus size: 11
16162496 CACGGGGCAC
16162506 CATCGTCGGAG
1 CATCGTCGGAG
*
16162517 CATCATCGGAG
1 CATCGTCGGAG
16162528 CATCGTCGGAG
1 CATCGTCGGAG
16162539 CATCG
1 CATCG
16162544 CCGAGAGCCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.21, C:0.29, G:0.32, T:0.18
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:16169159 original size:26 final size:26
Alignment explanation
Indices: 16169108--16169160 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
16169098 GTTGGCTTAC
* *
16169108 GCATAAGGAGTTCATTCCATGTCTAA
1 GCATAAGGAGTTAATTCCATGCCTAA
*
16169134 GCATATGGAGTTAATTCC-TAGCCTAA
1 GCATAAGGAGTTAATTCCAT-GCCTAA
16169160 G
1 G
16169161 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATAAGGAGTTAATTCCATGCCTAA
Found at i:16169957 original size:158 final size:159
Alignment explanation
Indices: 16169558--16170823 Score: 526
Period size: 158 Copynumber: 7.8 Consensus size: 159
16169548 GCGACAGCAA
* * * * *
16169558 GATCAGCAGCACGTAGGGGGGATCAGGCCGATCCCCAGCTTGCGCATTCTGCCTCTTCGACTGGC
1 GATCAACAGCACGTAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGAC-AGC
* * * *
16169623 TGAGCGCCTGCACTC-CTGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAG
65 TGAGCGCCCGCACGCTC-GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGTCTAAG
* * * ** *
16169686 GCCCCAACCGGACCGAGGGTTGTGGTAGTGG
129 GACCAAAACGGACCGAGGGTTGCAGTAGTAG
* * * * * * * * *
16169717 GACCGACAGCACGTAGAGGGGGATCGGATGGATCCCCGACTTGCGTATTATGCCTCTTCGGCCCG
1 GATCAACAGCACGTAG-GGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTC-GACAG
* * * * *
16169782 CTCAGCACCCG-AGCGCTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTGATTCCCA-GTCTAA
64 CTGAGCGCCCGCA-CGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGTCTAA
*
16169845 -GATCAAAACGGACCGAGGGTTGCAGTAGTAG
128 GGACCAAAACGGACCGAGGGTTGCAGTAGTAG
* * * * *
16169876 GATCAACAGCACGCAGGGGGTATCGGGTCGATCCCCGGCTTGCGCATTCTACCTCTCCGATCAAC
1 GATCAACAGCACGTAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGA-CAGC
* * * * *
16169941 TGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGACATATGGAGTTCATT-CCACGTCTCA--
65 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGTCTAAGG
* ** * * **
16170003 ACCGCAGTCGGACCGAAGGTTGTGGCAG-CGCGG
130 ACC-AAAACGGACCG-AGG--GTTGCAGTAGTAG
* * * * * * * * * *
16170036 GACCGACAGCACGCAGAGGGGGA-CTGGACTGATCCTCGGCTTACGCATTCTGCCTCTCCTATCG
1 GATCAACAGCACGTAG-GGGGGATCGGGTC-GATCCCCGGCTTGCGCATTCTGCCTCTTCGA-CA
* * * * *
16170100 GGTGAGTGCCCGCACCCTCGTTTTGTGGGTTGGCTTAGGCATACGAAGTTCATT-CCATGTCTAA
63 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGTCTAA
* **** * *
16170164 -GCCCCCGTCGGACCGGGGGTTGTGGCAGCAGAACTGACAGCGG
128 GGACCAAAACGGACCGAGGG-T-T-GCAGTAG---T---A---G
* * * *
16170207 GATCGACAGCACGCATA-GGGGGATCAGG-CTGATCCCCGACTTACGCATTATGCCTCTCCGGTC
1 GATCAACAGCACG--TAGGGGGGATCGGGTC-GATCCCCGGCTT--GC-----GCAT-T-C--T-
* * * * * * * *
16170270 GGCCTTTTCGGTCGGCTGAGCGTCCGCACGCTCATTCCGTGGGTTGACTTAGGCATACAGAGTTC
51 -GCCTCTTC-GACAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTC
* * * * * * * * * *
16170335 ATTTCTA-GTCTAA-GATCAGACCGGACCGAGAGTTACGGTAGCAA
114 ATTCCCATGTCTAAGGACCAAAACGGACCGAGGGTTGCAGTAGTAG
* * * * * * * * * *
16170379 GATCGACAGCATGTAGGGGGGACCGAGCCGATCCTCGGCTTACGCATTCTGCCTCTCCGGCCGAC
1 GATCAACAGCACGTAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGACAG-C
* * * * *
16170444 TGAGTGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-TCATGTCTAA-G
65 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGTCTAAGG
* * * * *** **
16170507 CCCCAATCGGATCGAGGGTTATGGTAGCGG
130 ACCAAAACGGACCGAGGGTTGCAGTAGTAG
* ** * * * * * * *
16170537 GA-CTGACAGCACGTAGAGGGGGATCGGACCGATCCCTGGCTAGCGTATTATGCCTCTCCAGCCG
1 GATC-AACAGCACGTAG-GGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTC-GACA
* * * * * *
16170601 GTTCAGCGCCTGAACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAA
63 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGTCTAA
* ** ** ** *
16170665 -GATCGGAACAAACC-ATGGGTTGTGGCAGTAG
128 GGACCAAAACGGACCGA-GGGTTGCAGTAGTAG
* * * * * * ** * * *
16170696 GATCGACAGCACGCAGGGGGTATCAGGTCGGTCCCCGACTTGTTCATTCTGCCTCTCCGGCCGGC
1 GATCAACAGCACGTAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTC-GACAGC
* * * * * * *
16170761 TGAACGCCCACAAGCTCATTTCGTGAGTTGGCTTAGGCATATGGAGGTCATT-CCATGTCTAAG
65 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGTCTAAG
16170824 CATACGGAAG
Statistics
Matches: 833, Mismatches: 216, Indels: 116
0.72 0.19 0.10
Matches are distributed among these distances:
157 14 0.02
158 266 0.32
159 168 0.20
160 110 0.13
161 113 0.14
162 4 0.00
163 1 0.00
164 3 0.00
169 1 0.00
170 2 0.00
171 49 0.06
172 16 0.02
173 2 0.00
175 1 0.00
178 3 0.00
179 1 0.00
180 1 0.00
181 4 0.00
182 2 0.00
183 1 0.00
184 69 0.08
185 2 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
GATCAACAGCACGTAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGACAGCT
GAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCATGTCTAAGGA
CCAAAACGGACCGAGGGTTGCAGTAGTAG
Found at i:16170178 original size:319 final size:317
Alignment explanation
Indices: 16169558--16170164 Score: 670
Period size: 318 Copynumber: 1.9 Consensus size: 317
16169548 GCGACAGCAA
* * * * **
16169558 GATCAGCAGCACGTAGGGGGGATCAGGCCGATCCCCAGCTTGCGCATTCTGCCTCTTCGACTGGC
1 GATCAACAGCACGCAGGGGGGATCAGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGACTAAC
* * ** * *
16169623 TGAGCGCCTGCACTCCTGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGGC
66 TGAGCGCCCGCACGCCTGTTTCATGGGTTGGCTTAGACATAGGGAGTTCATTCCACGTCTAA-GC
* * * *
16169688 CCCAACCGGACCGAGGGTTGTGGTAGTGGGACCGACAGCACGTAGAGGGGGATCGGATGGATCCC
130 CCCAACCGGACCGAAGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGATCGGATGGATCCC
* * * * *
16169753 CGACTTGCGTATTATGCCTCTTCGGCCCGCTCAGCACCCGAGCGCTCGTTCCGTGGGTTGACTTA
195 CGACTTACGCATTATGCCTCTCCGACCCGCTCAGCACCCGAGCCCTCGTTCCGTGGGTTGACTTA
* * *
16169818 GGCATACGGAGTTGATTCCCAGTCTAAGATCAAAACGGACCGAGGGTTGCAGTAGTAG
260 GGCATACGAAGTTCATTCCCAGTCTAAGACCAAAACGGACCGAGGGTTGCAGTAGTAG
* * * *
16169876 GATCAACAGCACGCAGGGGGTATCGGGTCGATCCCCGGCTTGCGCATTCTACCTCTCCGA-TCAA
1 GATCAACAGCACGCAGGGGGGATCAGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGACT-AA
*
16169940 CTGAGCGCCCGCACG-CTCGTTTCATGGGTTGGCTTAGACATATGGAGTTCATTCCACGTCTCAA
65 CTGAGCGCCCGCACGCCT-GTTTCATGGGTTGGCTTAGACATAGGGAGTTCATTCCACGTCT-AA
* **
16170004 -CCGCAGTCGGACCGAAGGTTGTGGCAGCGCGGGACCGACAGCACGCAGAGGGGGA-CTGGACT-
128 GCCCCAACCGGACCGAAGGTTGTGGCA--GCGGGACCGACAGCACGCAGAGGGGGATC-GGA-TG
* * * * * * * * ** **
16170066 GATCCTCGGCTTACGCATTCTGCCTCTCCTATCGGGTGAGTGCCCGCA-CCCTCGTTTTGTGGGT
189 GATCCCCGACTTACGCATTATGCCTCTCCGACCCGCTCAGCACCCG-AGCCCTCGTTCCGTGGGT
*
16170130 TGGCTTAGGCATACGAAGTTCATT-CCATGTCTAAG
253 TGACTTAGGCATACGAAGTTCATTCCCA-GTCTAAG
16170165 CCCCCGTCGG
Statistics
Matches: 236, Mismatches: 44, Indels: 17
0.79 0.15 0.06
Matches are distributed among these distances:
317 24 0.10
318 107 0.45
319 103 0.44
320 2 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (317 bp):
GATCAACAGCACGCAGGGGGGATCAGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGACTAAC
TGAGCGCCCGCACGCCTGTTTCATGGGTTGGCTTAGACATAGGGAGTTCATTCCACGTCTAAGCC
CCAACCGGACCGAAGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGATCGGATGGATCCCC
GACTTACGCATTATGCCTCTCCGACCCGCTCAGCACCCGAGCCCTCGTTCCGTGGGTTGACTTAG
GCATACGAAGTTCATTCCCAGTCTAAGACCAAAACGGACCGAGGGTTGCAGTAGTAG
Found at i:16171072 original size:26 final size:26
Alignment explanation
Indices: 16171043--16171096 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
16171033 GGTTGACTTC
*
16171043 AGCATACGGAGTTCATCCCCAGTCTA
1 AGCATACAGAGTTCATCCCCAGTCTA
*
16171069 AGCATACAGAGTTCATCCCTAGTCTA
1 AGCATACAGAGTTCATCCCCAGTCTA
16171095 AG
1 AG
16171097 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.24
Consensus pattern (26 bp):
AGCATACAGAGTTCATCCCCAGTCTA
Found at i:16171596 original size:26 final size:26
Alignment explanation
Indices: 16171544--16171596 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16171534 GTTGACTTAG
*
16171544 GCATACGGAGTTCATTCCATGTTTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
16171570 GCATATGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
16171596 G
1 G
16171597 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:16172110 original size:26 final size:26
Alignment explanation
Indices: 16172080--16172132 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16172070 GTTGGCTTAG
16172080 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
16172106 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16172132 G
1 G
16172133 AGGTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16173302 original size:26 final size:26
Alignment explanation
Indices: 16173273--16173325 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16173263 GTTGGCTTAG
*
16173273 GCATACGGTGTTCAAT-CCATGTCTAA
1 GCATACGGAGTTCAATCCCA-GTCTAA
*
16173299 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
16173325 G
1 G
16173326 ATTAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAGTCTAA
Found at i:16173671 original size:26 final size:26
Alignment explanation
Indices: 16173641--16173693 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16173631 GTTGACTTAG
16173641 GCATACAGAGTTCA-TCCTCAGTCTAA
1 GCATACAGAGTTCATTCCT-AGTCTAA
**
16173667 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
16173693 G
1 G
16173694 ATTGGATAGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:16173864 original size:26 final size:26
Alignment explanation
Indices: 16173834--16173887 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
16173824 TGGGTTGGCT
*
16173834 TAGGCATGCAGAGTTCATTC-CATGTC
1 TAGGCATACAGAGTTCATTCTCA-GTC
16173860 TAGGCATACAGAGTTCATTCTCAGTC
1 TAGGCATACAGAGTTCATTCTCAGTC
16173886 TA
1 TA
16173888 AGATTGAATC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.31
Consensus pattern (26 bp):
TAGGCATACAGAGTTCATTCTCAGTC
Found at i:16174074 original size:197 final size:194
Alignment explanation
Indices: 16173605--16174088 Score: 535
Period size: 196 Copynumber: 2.5 Consensus size: 194
16173595 TCTTACCGAT
16173605 TGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCTCAGTCTAAGCA
1 TGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCT-AGTCTAAGCA
* * * * *
16173670 TATGGAGTTCATTCCTAGTCTAAGATTGGATAGGGCCGAGGGTTGCGACAGCAAGACCAGTAGTA
65 TACGAAGTTCATTCC-AGTCTAAGATTGAATAGGACCGAGGGTTGCGACAGCAAGACCAGCAGTA
* * * * * * ** * *
16173735 GGATCGACAGCATGCAGGGGGGATCGGATCGATCCCCGACTTACGCATTCTGCCTCTTTGGTCGG
129 AGATCGACAGCACGCAGGGGGGACCGGACCGATCCCAGACTTACACATTCTGCCTCTTCCGACAG
16173800 C
194 C
* * * * *
16173801 TGAGTGCCCGTACGTTCGTTTCATGGGTTGGCTTAGGCATGCAGAGTTCATTCC-ATGTCTAGGC
1 TGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCA-TCCTA-GTCTAAGC
* ** *
16173865 ATAC-AGAGTTCATTCTCAGTCTAAGATTGAATCGGACCGAGGGTTGCGGTAGCAGGACCAGCAG
64 ATACGA-AGTTCATTC-CAGTCTAAGATTGAATAGGACCGAGGGTTGCGACAGCAAGACCAGCAG
* * * *
16173929 TAAGATCGACAGTACGCAGGAGGGGACCGGGCCGATCCTCAG-CTTGCATATTCTGCCTC-TCCG
127 TAAGATCGACAGCACGCAGG-GGGGACCGGACCGATCC-CAGACTTACACATTCTGCCTCTTCCG
16173992 ACAAGC
190 AC-AGC
* * * * *
16173998 TGAGCACCCGCACGGTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCA
1 TGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCAT-CCTAGTCTAAGCA
*
16174063 TACGAAGTTCATTCCCAATCTAAGAT
65 TACGAAGTTCATT-CCAGTCTAAGAT
16174089 CAGATCAGAC
Statistics
Matches: 239, Mismatches: 38, Indels: 21
0.80 0.13 0.07
Matches are distributed among these distances:
195 1 0.00
196 126 0.53
197 107 0.45
198 5 0.02
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (194 bp):
TGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCTAGTCTAAGCAT
ACGAAGTTCATTCCAGTCTAAGATTGAATAGGACCGAGGGTTGCGACAGCAAGACCAGCAGTAAG
ATCGACAGCACGCAGGGGGGACCGGACCGATCCCAGACTTACACATTCTGCCTCTTCCGACAGC
Found at i:16174084 original size:26 final size:26
Alignment explanation
Indices: 16174034--16174086 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16174024 GTTGACTTAG
* *
16174034 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGAAGTTCATCCCTAATCTAA
16174060 GCATACGAAGTTCATTCCC-AATCTAA
1 GCATACGAAGTTCA-TCCCTAATCTAA
16174086 G
1 G
16174087 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCTAATCTAA
Found at i:16174405 original size:26 final size:26
Alignment explanation
Indices: 16174376--16174428 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16174366 GTTGGCTTAG
16174376 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
16174402 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
16174428 G
1 G
16174429 TGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:16175129 original size:26 final size:26
Alignment explanation
Indices: 16175099--16175151 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16175089 GTTGACTTAG
*
16175099 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
16175125 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
16175151 G
1 G
16175152 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:16175651 original size:26 final size:26
Alignment explanation
Indices: 16175600--16175652 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16175590 GTTGGCTTAG
*
16175600 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGCCTAA
*
16175626 GCATACGGAGTTCATTCC-TAGCCTAA
1 GCATACAGAGTTCATTCCAT-GCCTAA
16175652 G
1 G
16175653 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGCCTAA
Found at i:16176180 original size:184 final size:184
Alignment explanation
Indices: 16175776--16176192 Score: 477
Period size: 184 Copynumber: 2.3 Consensus size: 184
16175766 GTCCGAACGG
* **
16175776 TCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCCTATGGAGTTCATTCC
1 TCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-TCCAGTCTAAGCCTACAGAGTTCATTCC
* * *
16175841 CAGTCTAAGATCATATCGGAGCGAGAGTTGCGACAGTAGGATCGACAGCACGTAGGGGGAGATCG
65 CAGTCTAAGATCAGATCGGAGCGAGAGTTGCGACAGGAGGATCGACAGCACATAGGGGGAGATCG
** * * * **
16175906 GGTCGACCCTCAGCTTGCTTATTCTGCCTCTCTGATCGACTGAGCACCCGCACAC
130 GGTCGACCCTCAGCTTGCGCATTATGCCTCTCTGACCGACTCAGCACCCAAACAC
* *
16175961 TCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCGTACAGAGTTCATTCC
1 TCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCA-GTCTAAGCCTACAGAGTTCATTCC
* * * *
16176026 CAGTCTAAGATCAGA-CGGATCGAGGGTTGCGACAGCGA-GATCGATAGCACATAGAGGTG-GAT
65 CAGTCTAAGATCAGATCGGAGCGAGAGTTGCGACAG-GAGGATCGACAGCACATAG-GGGGAGAT
* ** *
16176088 CGGGTCAGTCCC-CAGCTTGCGCATTATGCCTCTCCTG-CC-AGCTCAGCGTCCAAACGC
128 CGGGTC-GACCCTCAGCTTGCGCATTATGCCTCT-CTGACCGA-CTCAGCACCCAAACAC
* * **
16176145 TCGTTTCGTGGGTTGACTTAAGCATACAAAGTTCATTCCCAGTCTAAG
1 TCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAG
16176193 ATCGAACCGG
Statistics
Matches: 197, Mismatches: 28, Indels: 15
0.82 0.12 0.06
Matches are distributed among these distances:
183 1 0.01
184 112 0.57
185 84 0.43
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.26
Consensus pattern (184 bp):
TCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGCCTACAGAGTTCATTCCC
AGTCTAAGATCAGATCGGAGCGAGAGTTGCGACAGGAGGATCGACAGCACATAGGGGGAGATCGG
GTCGACCCTCAGCTTGCGCATTATGCCTCTCTGACCGACTCAGCACCCAAACAC
Found at i:16176499 original size:159 final size:158
Alignment explanation
Indices: 16176143--16176824 Score: 542
Period size: 158 Copynumber: 4.3 Consensus size: 158
16176133 GCGTCCAAAC
* * * ** * *
16176143 GCTCGTTTCGTGGGTTGACTTAAGCATACAAAGTTCATTCCCA-GTCTAAGATCGAACCGGACCG
1 GCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATT-CCATGTCTAAGCCCCAATCGGACCG
* ** * * * * * * * *
16176207 AGGGTTGCGATAGCAGGATCGGCAGCATGCAG-G-GGGACCAGGTCGATCCTTGGCTTGCGTATT
65 AGGGTTGTGGCAGTAGGATCGGCAGCACGTAGAGAGGGACCGGGTCGATCCTCGACTTACGCATT
* * * *
16176270 CTGCCTCTCCGACCGACTG-AGCACCCGCACA
130 CTACCTCTCCGATCGGCTGAAG--CCCGTA-A
* ** * *
16176301 -C-CCTTTCGTGGGTTGGCTTAGGCATGGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGA
1 GCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAATCGGACCGA
* * * * * *
16176364 GGGTTGTGGCAATAGGATCGGTAGCACGCAGAGAAGGACCGAGCCGATCCTCGACTTACGCATTC
66 GGGTTGTGGCAGTAGGATCGGCAGCACGTAGAGAGGGACCGGGTCGATCCTCGACTTACGCATTC
*
16176429 TACCTCTCCGATCGGTTGAATGCCCGTAA
131 TACCTCTCCGATCGGCTGAA-GCCCGTAA
* * * *
16176458 GCTCGTTTCGTGGGTTAGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAGTCAGACTGA
1 GCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAATCGGACCGA
* ** * *
16176523 -GGTTGTGGCAGTGGGATTAGCAGCACGTAGA-AGGGGACCGGGTCGATCCTCGGCTTGCGCATT
66 GGGTTGTGGCAGTAGGATCGGCAGCACGTAGAGA-GGGACCGGGTCGATCCTCGACTTACGCATT
* * * * * * **
16176586 ATGCCTTTCAGGTCGGCT-CAGCACCCAAA
130 CTACCTCTCCGATCGGCTGAAGC-CCGTAA
* * ** *
16176615 CGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCA-GTATAAG-ATCAGATTGGAC
1 -GCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATT-CCATGTCTAAGCCCCA-ATCGGAC
* ** * * * * * *
16176678 CAAGGGTTGCAGTAGTAGGATCGACAGCACGTAG-GAGGGATCGGGTCGGTCCTCGATTTATGCA
63 CGAGGGTTGTGGCAGTAGGATCGGCAGCACGTAGAGAGGGACCGGGTCGATCCTCGACTTACGCA
* *
16176742 TTCTACCTCTCCGATCGGCTGAGCGCCCGTAC
128 TTCTACCTCTCCGATCGGCTGA-AGCCCGTAA
* * * *
16176774 GCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTGTAAGC
1 GCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGC
16176825 ATATGGAATT
Statistics
Matches: 410, Mismatches: 96, Indels: 35
0.76 0.18 0.06
Matches are distributed among these distances:
155 3 0.01
156 74 0.18
157 14 0.03
158 232 0.57
159 84 0.20
160 3 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (158 bp):
GCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAATCGGACCGA
GGGTTGTGGCAGTAGGATCGGCAGCACGTAGAGAGGGACCGGGTCGATCCTCGACTTACGCATTC
TACCTCTCCGATCGGCTGAAGCCCGTAA
Found at i:16176969 original size:184 final size:184
Alignment explanation
Indices: 16176652--16176999 Score: 482
Period size: 184 Copynumber: 1.9 Consensus size: 184
16176642 TACGAAGTTC
* *
16176652 ATTCCCAGTATAAGATCAGATTGGACCAAGGGTTGCAGTAGTAGGATCGACAGCACGTAGGAGGG
1 ATTCCCAGTATAAGATCAGATCGGACCAAGGGTTGCAGTAGCAGGATCGACAGCACGTAGGAGGG
* * ** * * * ** *
16176717 ATCGGGTCGGTCCTCGATTTATGCATTCTACCTCTCCGATCGGCTGAGCGCCCGTACGCTCATTT
66 ACCGGGCCAATCCCCGACTTACGCATTCTACCTCTCCGATCGGCTGAGCGCCCACACGCCCATTT
16176782 CGTGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTGTAAGCATATGGAATTT
131 CGTGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTGTAAGCATATGGAATTT
* ** * * *
16176836 ATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGTAGGGGGG
1 ATTCCCAGTATAAGATCAGATCGGACCAAGGGTTGCAGTAGCAGGATCGACAGCACGTAGGAGGG
* * * *
16176901 ACCGGGCCAATCCCC-AGCTTGCGCATTTTACCTCTCCGATCGGCTGAGCGCCCACATGCCCGTT
66 ACCGGGCCAATCCCCGA-CTTACGCATTCTACCTCTCCGATCGGCTGAGCGCCCACACGCCCATT
16176965 TCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA
130 TCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA
16177000 TGTCTATGCC
Statistics
Matches: 141, Mismatches: 22, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
183 1 0.01
184 140 0.99
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (184 bp):
ATTCCCAGTATAAGATCAGATCGGACCAAGGGTTGCAGTAGCAGGATCGACAGCACGTAGGAGGG
ACCGGGCCAATCCCCGACTTACGCATTCTACCTCTCCGATCGGCTGAGCGCCCACACGCCCATTT
CGTGGGTTGGCTTAGGCATACGGAGTTCATTCCACGTGTAAGCATATGGAATTT
Found at i:16179074 original size:26 final size:26
Alignment explanation
Indices: 16179037--16179089 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
16179027 GTTGGCTTAG
16179037 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
16179063 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
16179089 G
1 G
16179090 AACAGATCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 21 0.84
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16179274 original size:26 final size:26
Alignment explanation
Indices: 16179245--16179297 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16179235 GTTAACTTAG
*
16179245 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
16179271 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16179297 G
1 G
16179298 ATCGGTCTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16179624 original size:26 final size:26
Alignment explanation
Indices: 16179588--16179640 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16179578 GTTGGCTTAG
16179588 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
16179614 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16179640 G
1 G
16179641 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16180346 original size:26 final size:26
Alignment explanation
Indices: 16180310--16180361 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16180300 TTAACTTAAT
*
16180310 CATACGGAGTTTATCCCCAATCTAAG
1 CATACGGAGTTCATCCCCAATCTAAG
* *
16180336 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAATCTAAG
16180362 ATCAAACCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAATCTAAG
Found at i:16180839 original size:25 final size:26
Alignment explanation
Indices: 16180799--16180850 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 26
16180789 TTTGGCTTAG
*
16180799 GCATACGGTGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16180825 GCATAC-GAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16180850 G
1 G
16180851 ATCGGATTAG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 15 0.62
26 9 0.38
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16181031 original size:26 final size:26
Alignment explanation
Indices: 16180994--16181046 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16180984 GTTGACTTAG
*
16180994 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
16181020 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
16181046 G
1 G
16181047 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:16181528 original size:26 final size:26
Alignment explanation
Indices: 16181492--16181544 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16181482 GTTGGCTTAG
*
16181492 GCATATGGAGTTTATT-CCATGTCTAA
1 GCATATGGAGTTCATTCCCA-GTCTAA
16181518 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
16181544 G
1 G
16181545 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Done.