Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19866354
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 74000 characters in sequence are not A, C, G, or T
File 74 of 100
Found at i:16181730 original size:26 final size:26
Alignment explanation
Indices: 16181700--16181752 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16181690 GTTGACTTAG
*
16181700 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
16181726 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16181752 G
1 G
16181753 ATCGTATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16182111 original size:159 final size:158
Alignment explanation
Indices: 16181733--16182125 Score: 432
Period size: 159 Copynumber: 2.5 Consensus size: 158
16181723 TAAGCATACA
* *
16181733 GAGTTCATTCCCAGTCTAAGATC-GTATCAGATCGAGGGTTGTGGCAGTAGGATCGATAGCACGC
1 GAGTTCATTTCCAGTCTAAGATCAG-ATCGGATCGAGGGTTGTGGCAGTAGGATCGATAGCACGC
* * * * * * * * *
16181797 AGGGGGGATCGGGCTGACCCCCGACTTGTGCATTCTGCTTCTGCGATCAACTGAGCACCCGCACG
65 AGGGGGGACCGGGCTGACCCCCGACTTGCGCATTATGCCTATCCGACCAACTGAACACCCGAACG
*
16181862 CTCGTTTCATGGGTTGGCTTAGGCATAGG
130 CTCGTTTCATGGGTTGACTTAGGCATAGG
** * * *
16181891 GAGTTCA-TTCCATGTCTAAGCCCTAG-TCGGATCGAGGGTTGTGGCAGTGGGACCGATAGCACA
1 GAGTTCATTTCCA-GTCTAAGATC-AGATCGGATCGAGGGTTGTGGCAGTAGGATCGATAGCACG
* * * * * *
16181954 CAGAGGGGGACCGGGCTGATCCCCGGCTTGCGCATTATGCCTATCCGACCAGCTTAACATCTGAA
64 CAG-GGGGGACCGGGCTGACCCCCGACTTGCGCATTATGCCTATCCGACCAACTGAACACCCGAA
**
16182019 CGCTCGTTTCATGGGTTGACTTAGGCATATT
128 CGCTCGTTTCATGGGTTGACTTAGGCATAGG
* * * * * * *
16182050 GAGTTCATTTCCAGTCTAAGATCAGATCGGACCAAGGGTTGCGGTAGCAGGATTGACAGCACGCA
1 GAGTTCATTTCCAGTCTAAGATCAGATCGGATCGAGGGTTGTGGCAGTAGGATCGATAGCACGCA
*
16182115 GGAGGGACCGG
66 GGGGGGACCGG
16182126 ACCGAGGGTT
Statistics
Matches: 191, Mismatches: 38, Indels: 12
0.79 0.16 0.05
Matches are distributed among these distances:
157 4 0.02
158 62 0.32
159 119 0.62
160 6 0.03
ACGTcount: A:0.21, C:0.24, G:0.31, T:0.24
Consensus pattern (158 bp):
GAGTTCATTTCCAGTCTAAGATCAGATCGGATCGAGGGTTGTGGCAGTAGGATCGATAGCACGCA
GGGGGGACCGGGCTGACCCCCGACTTGCGCATTATGCCTATCCGACCAACTGAACACCCGAACGC
TCGTTTCATGGGTTGACTTAGGCATAGG
Found at i:16182144 original size:46 final size:46
Alignment explanation
Indices: 16182077--16182166 Score: 144
Period size: 46 Copynumber: 2.0 Consensus size: 46
16182067 AAGATCAGAT
* *
16182077 CGGACCAAGGGTTGCGGTAGCAGGATTGACAGCACGCAGGAGGGAC
1 CGGACCAAGGGTTACGGTAGCAGGATCGACAGCACGCAGGAGGGAC
* *
16182123 CGGACCGAGGGTTATGGTAGCAGGATCGACAGCACGCAGGAGGG
1 CGGACCAAGGGTTACGGTAGCAGGATCGACAGCACGCAGGAGGG
16182167 GATCGGGCTG
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 40 1.00
ACGTcount: A:0.26, C:0.21, G:0.42, T:0.11
Consensus pattern (46 bp):
CGGACCAAGGGTTACGGTAGCAGGATCGACAGCACGCAGGAGGGAC
Found at i:16182284 original size:26 final size:26
Alignment explanation
Indices: 16182248--16182326 Score: 124
Period size: 26 Copynumber: 3.0 Consensus size: 26
16182238 GTTGGCTTAG
*
16182248 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
16182274 GCATACGGAGTTCATTCCATGGCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
16182300 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
16182326 G
1 G
16182327 ATCGGACTGG
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
26 46 0.94
27 3 0.06
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:16182774 original size:26 final size:26
Alignment explanation
Indices: 16182725--16182777 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16182715 GTTGGCTTAG
* *
16182725 GCATATGGAGTTCATTGCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
16182751 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
16182777 G
1 G
16182778 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:16182973 original size:26 final size:26
Alignment explanation
Indices: 16182939--16182989 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16182929 TGGCGTAGGT
16182939 ATACAGAGTTCATT-CCATGTCTAAGC
1 ATACAGAGTTCATTCCCA-GTCTAAGC
*
16182965 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
16182990 AGTTTGAGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:16183884 original size:26 final size:26
Alignment explanation
Indices: 16183846--16183898 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16183836 GGCTCAAACT
*
16183846 CTTAGTCTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
* * *
16183872 CTTAGACTTGGAATTAACTCTTTATG
1 CTTAGACTGGGAATGAACTCTGTATG
16183898 C
1 C
16183899 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.17, G:0.21, T:0.38
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:16184401 original size:26 final size:26
Alignment explanation
Indices: 16184372--16184423 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16184362 TCCAATCCGA
16184372 TCTTAGAC-TGGGAATGAACTCCGTAT
1 TCTTAGACAT-GGAATGAACTCCGTAT
16184398 TCTTAGACATGGAATGAACTCCGTAT
1 TCTTAGACATGGAATGAACTCCGTAT
16184424 ACCTAAGCCA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (26 bp):
TCTTAGACATGGAATGAACTCCGTAT
Found at i:16185966 original size:158 final size:158
Alignment explanation
Indices: 16185631--16185930 Score: 361
Period size: 158 Copynumber: 1.9 Consensus size: 158
16185621 ATGCTTAGAA
* * * * *
16185631 ATGGAATGAACTCCGTATGCCTAAGCCAAACCACGAAATGAGCGTGCGGGTGCTCAGCCAGTCGA
1 ATGGAATGAACTCCGTATGCCTAAGCCAAACCACGAAACGAGCGTACGGGCGCTCAGACAGCCGA
* * * * * * * *
16185696 AGAGGCAGAATGCGCAAGCTAGGGATTGGCCCGGTCCCCCTTTACGTGCTGTCGGTCCCACTGCC
66 AAAGGCAGAATACGCAAGCGAGAGATCGGCCCGGTCCCCCTCTACATGCTGTCGATCCCACTGCC
* * *
16185761 ACCACCCTCGGTCCAGCTGGGGCTTGAC
131 ACAACCCTCGATCCAGCTGGAGCTTGAC
* * * *
16185789 ATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAGACGGCCGA
1 ATGGAATGAACTCCGTATGCCTAAGCCAAACCACGAAACGAGCGTACGGGCGCTCAGACAGCCGA
* * *
16185854 AAAGGCAGAATACGCAAGCCGA-AGATCGGCTCGGTCCCCC-CTGCATGCTGTCGATCCTACTGC
66 AAAGGCAGAATACGCAAG-CGAGAGATCGGCCCGGTCCCCCTCTACATGCTGTCGATCCCACTGC
*
16185917 CGCAACCCTCGATC
130 CACAACCCTCGATC
16185931 TGATTTGATC
Statistics
Matches: 118, Mismatches: 23, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
157 29 0.25
158 87 0.74
159 2 0.02
ACGTcount: A:0.23, C:0.33, G:0.27, T:0.17
Consensus pattern (158 bp):
ATGGAATGAACTCCGTATGCCTAAGCCAAACCACGAAACGAGCGTACGGGCGCTCAGACAGCCGA
AAAGGCAGAATACGCAAGCGAGAGATCGGCCCGGTCCCCCTCTACATGCTGTCGATCCCACTGCC
ACAACCCTCGATCCAGCTGGAGCTTGAC
Found at i:16186464 original size:159 final size:159
Alignment explanation
Indices: 16186163--16186571 Score: 351
Period size: 159 Copynumber: 2.6 Consensus size: 159
16186153 ACTCCGTATG
* * * *
16186163 CTTAGACATGGAATGAACTCCGTATGCCTAAGTTACCCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAAC
* *
16186228 CAGTCGAAGAGGTAGAATGCGCAAGCCAAGGACCGACCCTGTCCCCGCCTACATGCTGTCGATCC
66 CAGTCGAAGAGGCAGAATGCGCAAGCCAAGGACCGACCCGGTCCCCGCCTACATGCTGTCGATCC
* *
16186293 TGCTACCGCAACCCTTGGTCTGGTCCAAT
131 TACTACCACAACCCTTGGTCTGGTCCAAT
* * * *
16186322 CTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGCACTGAA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAA
* * * * * * * * * * *
16186386 CCGGTCGAAGAGGCATAATGCGTAAGTCGAGGATCGGCTCGGTCCCC-CTTTGCGTGCTGTC-AG
65 CCAGTCGAAGAGGCAGAATGCGCAAGCCAAGGACCGACCCGGTCCCCGC-CTACATGCTGTCGA-
* * *** * ****
16186449 TCTTACTGCCACAACCCTCAATCT-GACTGGGG
128 TCCTACTACCACAACCCTTGGTCTGGTC-CAAT
* * * * * *
16186481 CTTAGACATGGAATGAACTCCTTATGCCTAAG-CTAGCCCACGAAATGAGCATGCGGGTACTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGTC-AACCCACGAAACGAGCGTGCGGGCACTCAA
* ** *
16186545 CCAGTCGGAGAGATAGAATGCGTAAGC
65 CCAGTCGAAGAGGCAGAATGCGCAAGC
16186572 TGGGGATCGG
Statistics
Matches: 195, Mismatches: 49, Indels: 12
0.76 0.19 0.05
Matches are distributed among these distances:
158 6 0.03
159 188 0.96
160 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAAC
CAGTCGAAGAGGCAGAATGCGCAAGCCAAGGACCGACCCGGTCCCCGCCTACATGCTGTCGATCC
TACTACCACAACCCTTGGTCTGGTCCAAT
Found at i:16187559 original size:26 final size:26
Alignment explanation
Indices: 16187523--16187575 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16187513 CCGATCCAAT
*
16187523 CTTAGACTGGGAATGACCTCTATATG
1 CTTAGACTGGGAATGAACTCTATATG
* *
16187549 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
16187575 C
1 C
16187576 CTAAGTCATC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:16187894 original size:26 final size:26
Alignment explanation
Indices: 16187865--16187917 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16187855 CCGATCTGAT
* *
16187865 CTTAGACTGTGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
16187891 CTTAGACTGAGGATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
16187917 C
1 C
16187918 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:16188432 original size:184 final size:183
Alignment explanation
Indices: 16188076--16188435 Score: 440
Period size: 184 Copynumber: 2.0 Consensus size: 183
16188066 TGACTGGGGT
** * *
16188076 TTAGACATGGAATGAACTCCATATGCCCTAGAAAACCCATGAAACGAACGTGCGGGTGCTCAGCC
1 TTAGACATGGAATGAACTCCATATGCCCTAGAAAACCCACCAAACGAACGTGCGGGCGCTCAACC
* * *
16188141 GGCCGGAGAGGCAGTATGCGTAAGTCAGGGATTAGCCCGATCCCCCCCTTCATGCTGTCGATCTT
66 GGCCGAAAAGGCAATATGCGTAAGTCAGGGATTAGCCCGAT-CCCCCCTTCATGCTGTCGATCTT
* *
16188206 GCTGCCGCAACCCTTGGCCTGATCCGATCATATACTGGAATGAACTTCGTATGC
130 GCTGCCGCAACCCTCGGCCTGATCCGATCATAGACTGGAATGAACTTCGTATGC
** *
16188260 TTAGACATGGAATGAACTCCATATG-CCTAAGCCAACCCACCAAACGAGCGTGCGGGCGCTCAAC
1 TTAGACATGGAATGAACTCCATATGCCCT-AGAAAACCCACCAAACGAACGTGCGGGCGCTCAAC
* * *
16188324 CGGTCGAAAAGGCAATATGCGTAAGTCAGGGA-TAGGCCCGGT-CCCCCTTGCGTGCTGTCGAT-
65 CGGCCGAAAAGGCAATATGCGTAAGTCAGGGATTA-GCCCGATCCCCCCTT-CATGCTGTCGATC
* * ** * * *
16188386 TCTGCTGTCGTAACCCTCGGTTTGGTCTGATCTTAGACTGGGAATGAACT
128 T-TGCTGCCGCAACCCTCGGCCTGATCCGATCATAGACT-GGAATGAACT
16188436 CCATATGCCT
Statistics
Matches: 149, Mismatches: 22, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
182 8 0.05
183 44 0.30
184 97 0.65
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.23
Consensus pattern (183 bp):
TTAGACATGGAATGAACTCCATATGCCCTAGAAAACCCACCAAACGAACGTGCGGGCGCTCAACC
GGCCGAAAAGGCAATATGCGTAAGTCAGGGATTAGCCCGATCCCCCCTTCATGCTGTCGATCTTG
CTGCCGCAACCCTCGGCCTGATCCGATCATAGACTGGAATGAACTTCGTATGC
Found at i:16188761 original size:26 final size:26
Alignment explanation
Indices: 16188732--16188782 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
16188722 CCGGTCTGAT
16188732 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
16188758 CTTAGACTAGGGATGAACTCCGTAT
1 CTTAGACTAGGAATGAACTCCGTAT
16188783 ACCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16190726 original size:26 final size:26
Alignment explanation
Indices: 16190688--16190740 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16190678 GGCTCAAAAT
16190688 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16190714 CTTAGACCT-GGAATGAACTCCGTATG
1 CTTAGA-CTAGGAATGAACTCCGTATG
16190740 C
1 C
16190741 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16191216 original size:26 final size:26
Alignment explanation
Indices: 16191187--16191239 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16191177 CTGGTCCAAT
*
16191187 CTTAGACT-GGGAATGAACTCTGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
16191213 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
16191239 C
1 C
16191240 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:16191665 original size:158 final size:158
Alignment explanation
Indices: 16191397--16191897 Score: 499
Period size: 158 Copynumber: 3.2 Consensus size: 158
16191387 CCGACTGGGG
* *
16191397 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * * * *
16191462 CGATCGGAGAGGCAAAATGTGCAAGTCGAGGATTGGCTCGATCCCCCCTGCGTGCTGTTGATCCT
66 CGACCGGAGAGGCAAAATGCGCAAGTCGAGGATCGGCTCGGTCCCCCCTGCGTGCTGTCGATCCT
* * *
16191527 GCTACCGCAACCCTCGATTTGATTTGAT
131 GCTACCGCAACCCTCGGTCTGATTCGAT
* * * * *
16191555 CTTAGA-ATAGGAATGAACTCCGTATGCCTATGTCAACCCATGAAA-GAAGCGTGCGGGTGCTGA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACG-AGCGTGCGGGCGCTCA
* * * * * * * * * * *
16191618 CTCGGCCGAATAGGCATAATGCGTAAGTCGTGGATCAGCCCGGTCCCCCTCTACGTGCTGTCGCT
64 GTCGACCGGAGAGGCAAAATGCGCAAGTCGAGGATCGGCTCGGTCCCCC-CTGCGTGCTGTCGAT
* * * * * * **
16191683 CCCGTTACCACAACCCTCGGTCCGACTGGGG
128 CCTGCTACCGCAACCCTCGGTCTGATTCGAT
* *
16191714 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG-GACGTGCGGGCGTTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG-CGTGCGGGCGCTCAG
* * * * * * *
16191778 TCGACCGGAGAGGCAGAATGCGCAAGGCGGGGATCGGCTCGGTCCCTCTTGTGTACTGTCGATCC
65 TCGACCGGAGAGGCAAAATGCGCAAGTCGAGGATCGGCTCGGTCCCCCCTGCGTGCTGTCGATCC
* * * *
16191843 TGCTGCTGCAACGCTCGGTCTGATCCGAT
130 TGCTACCGCAACCCTCGGTCTGATTCGAT
16191872 CTTAGAC-TGGGAATGAACTCC-TATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
16191898 TTAGACTGGG
Statistics
Matches: 269, Mismatches: 67, Indels: 15
0.77 0.19 0.04
Matches are distributed among these distances:
157 9 0.03
158 137 0.51
159 120 0.45
160 3 0.01
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
CGACCGGAGAGGCAAAATGCGCAAGTCGAGGATCGGCTCGGTCCCCCCTGCGTGCTGTCGATCCT
GCTACCGCAACCCTCGGTCTGATTCGAT
Found at i:16191821 original size:159 final size:158
Alignment explanation
Indices: 16191374--16191823 Score: 492
Period size: 159 Copynumber: 2.8 Consensus size: 158
16191364 ATCCTGCTGT
16191374 CACAACCCAT-GGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
1 CACAACCC-TCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
* * * * * *
16191438 GAAATGAGCGTGCAGGCGCTCAGTCGATCGGAGAGGCAAAATGTGCAAGTCGAGGATTGGCTCGA
65 GAAAGGAGCGTGCGGGCGCTCAGTCGACCGGAGAGGCAAAATGCGCAAGTCGAGGATCGGCTCGG
* * *
16191503 TCCCCCCTGCGTGCTGTTGATCCTGCTAC
130 TCCCCCCTACGTGCTGTCGATCCCGCTAC
* * ** * * ** * * *
16191532 CGCAACCCTCGATTTGATTTGATCTTAGA-ATAGGAATGAACTCCGTATGCCTATGTCAACCCAT
1 CACAACCCTCGGTCCGACTGGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCAC
* * * * * * * * * * * *
16191596 GAAAGAAGCGTGCGGGTGCTGACTCGGCCGAATAGGCATAATGCGTAAGTCGTGGATCAGCCCGG
65 GAAAGGAGCGTGCGGGCGCTCAGTCGACCGGAGAGGCAAAATGCGCAAGTCGAGGATCGGCTCGG
* *
16191661 TCCCCCTCTACGTGCTGTCGCTCCCGTTAC
130 TCCCCC-CTACGTGCTGTCGATCCCGCTAC
*
16191691 CACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
1 CACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACG
* * * *
16191756 AAACGGA-CGTGCGGGCGTTCAGTCGACCGGAGAGGCAGAATGCGCAAGGCGGGGATCGGCTCGG
66 AAA-GGAGCGTGCGGGCGCTCAGTCGACCGGAGAGGCAAAATGCGCAAGTCGAGGATCGGCTCGG
16191820 TCCC
130 TCCC
16191824 TCTTGTGTAC
Statistics
Matches: 227, Mismatches: 60, Indels: 9
0.77 0.20 0.03
Matches are distributed among these distances:
157 3 0.01
158 101 0.44
159 119 0.52
160 4 0.02
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (158 bp):
CACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACG
AAAGGAGCGTGCGGGCGCTCAGTCGACCGGAGAGGCAAAATGCGCAAGTCGAGGATCGGCTCGGT
CCCCCCTACGTGCTGTCGATCCCGCTAC
Found at i:16191906 original size:25 final size:26
Alignment explanation
Indices: 16191872--16191923 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
16191862 CTGATCCGAT
16191872 CTTAGACTGGGAATGAACTCC-TATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16191897 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16191923 C
1 C
16191924 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 20 0.80
26 5 0.20
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16192953 original size:159 final size:157
Alignment explanation
Indices: 16192617--16192975 Score: 370
Period size: 157 Copynumber: 2.3 Consensus size: 157
16192607 TGAACTCCGT
* * * * * * *
16192617 ATGCTTAGACATGTAATGAACTCTGTATGCCTAAGCTAATCCATGAAACGAGTGTGCGGTCGCTC
1 ATGCTTAGACATGGAATGAACTCCGTATGCCTAAGC-AACCCATAAAACGAGCGTGCGGGCACTC
* * * * **
16192682 AGCCGGTCGGAGAGGCAAATGCGCAAGCCAGAGATCGGTCTAGTCCCCCCTGCGTGCTGTCGATC
65 AGCCGATCGAAGAGGCAAATGCGCAAGCCAGAGATCAGCCTAGTCCCCCCTGCGTGCTACCGATC
** * * *
16192747 GTACTGTCACAACCTTGGATCTGGTCTG
130 CCACTGCCACAACCCTCGATCTGGTCTG
* *
16192775 AT-CTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCATAAAACGGGCGTGCGGGCACT
1 ATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAG-CAACCCATAAAACGAGCGTGCGGGCACT
* * *
16192838 GAGCCGATCGAAGAGGCATAATGCGCAAGCC-GAGGATCAGCCT-GATCCCTCTCTGTGTGCTAC
64 CAGCCGATCGAAGAGGCA-AATGCGCAAGCCAGA-GATCAGCCTAG-TCCC-CCCTGCGTGCTAC
16192901 CGATCCCACTGCCACAACCCTCGATCTGG-CT-
125 CGATCCCACTGCCACAACCCTCGATCTGGTCTG
* *
16192932 AGTGCTTTGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
1 A-TGCTTAGACATGGAATGAACTCCGTATGCCTAAG-CAACCCA
16192976 CGTAATAGGC
Statistics
Matches: 165, Mismatches: 27, Indels: 17
0.79 0.13 0.08
Matches are distributed among these distances:
156 1 0.01
157 67 0.41
158 29 0.18
159 67 0.41
160 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (157 bp):
ATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCAACCCATAAAACGAGCGTGCGGGCACTCA
GCCGATCGAAGAGGCAAATGCGCAAGCCAGAGATCAGCCTAGTCCCCCCTGCGTGCTACCGATCC
CACTGCCACAACCCTCGATCTGGTCTG
Found at i:16193489 original size:26 final size:26
Alignment explanation
Indices: 16193460--16193512 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16193450 CCAGTCCAAT
16193460 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
16193486 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16193512 C
1 C
16193513 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16193770 original size:355 final size:354
Alignment explanation
Indices: 16192777--16193932 Score: 1015
Period size: 355 Copynumber: 3.2 Consensus size: 354
16192767 CTGGTCTGAT
* ** * * * * *
16192777 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCATAAAACGGGCGTGCGGGCACTGAGC
1 CTTAGACTGGG-ATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGCGCTCAGC
* * ** * * * **
16192842 CGATCGAAGAGGCATAATGCGCAAGCCGAGGATCAGCCTGATCCCTCTCTGTGTGCTACCGATC-
65 CGGTCGGAGAGGCATAATGCATAAGTCGAGGATCAGCCCGATCCCCCTCTACGTGCTACCGATCT
*** * * * *
16192906 C-C-A------CTG---CCACAACCCTC-GATCTGGCTAGTGCTTTGACATGGAATGAACTCCCT
130 CGCTATCGGTCCTGCTACCACAACCCTCAG-TCAAACTGGGGCTTAGACATGGAATGAACTCCGT
* * * * *
16192959 ATGCCTAAGCCAACCCACGTAAT-AGGCGTGCAGGCGCTCAACCGACCGGATAGGTAGAATGCGC
194 ATGCCTAAGCCAACCCATGAAATGA-GCGTGCAGGCGCTCAGCCGACCGAAGAGGTAGAATGCGC
* * * **
16193023 AAGTCGGGGATCTGCTCGGTCCCCCTGCATGT-TG-T-CGATCTTGCTGCCATAACCCTCGATCC
258 AAGCCGGGGATCAGCTCGG-CCCCCT-CATGTGTGCTACGATCTTGCTACCGCAACCCTCGATCC
* *
16193085 GATCTGATCTTAGACTGGGAATGAACTCTATAAG
321 GATCTGATCTTAGACTGGGAATGAACTCCATATG
* * *
16193119 CTTAGACTTGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGTGGGCACTCAGCC
1 CTTAGACTGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGCGCTCA---
* *
16193184 GACCGGAGAGGTTGGTCGGAGTGGCATAATGCATAAGTCGAGGATCAGCCTGATCCCCCTCTACG
63 G-CC---------GGTCGGAGAGGCATAATGCATAAGTCGAGGATCAGCCCGATCCCCCTCTACG
* * *
16193249 TGCTACCGATCTCGCTGTCGGTCCTGCTGCCACAACCCTCAGTCAAACTGGGGCTGAGACATGGA
118 TGCTACCGATCTCGCTATCGGTCCTGCTACCACAACCCTCAGTCAAACTGGGGCTTAGACATGGA
*
16193314 ATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGTAGGCGCTCAGCCGACC-AGAGAG
183 ATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCGCTCAGCCGACCGA-AGAG
* * **
16193378 GCAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCTC-TGTGTGCTACCGATCTTGCTACCGCAA
247 GTAGAATGCGCAAGCCGGGGATCAGCTCGGCCCCCTCATGTGTGCTA-CGATCTTGCTACCGCAA
**
16193442 CCCTCGATCC-AGTCCAATCTTAGACTGGGAATGAACTCCATATG
311 CCCTCGATCCGA-TCTGATCTTAGACTGGGAATGAACTCCATATG
* * *
16193486 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCATGCGGCCGTTCAGC
1 CTTAGACT-GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGCGCTCAGC
* * * *
16193551 CGGTCGGAGAGGCATAATGCGTAAGT-TAGGAATCAGCCCGATCCCCCTCTGCGTGCTACTGATC
65 CGGTCGGAGAGGCATAATGCATAAGTCGAGG-ATCAGCCCGATCCCCCTCTACGTGCTACCGATC
* ** **** * * *
16193615 -CTGCTATCGGTCCTGCTACCACAACGCTTGGTCCGGTTGTGGCTTAGACAAGGAATTAACTCCG
129 TC-GCTATCGGTCCTGCTACCACAACCCTCAGTCAAACTGGGGCTTAGACATGGAATGAACTCCG
* * * * * *
16193679 TATGCTTAAGCCAACCCATGAAATGAGCGTGCGGGTGCCCAGTCGACCGAAGAGGTAGAATGCGT
193 TATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCGCTCAGCCGACCGAAGAGGTAGAATGCGC
* * *
16193744 AAGCCGGGGATCAGCCCGGCCCCCTCTTATGTGCTATCGATCCTGCTGCTAGCCCTGCTACCATA
258 AAGCCGGGGATCAGCTCGGCCCCCTCATGTGTGCTA-CGAT-CT--TGCTA--CC-G----C--A
* * * *
16193809 ACCCTCGATCCGATCTGATCTTAGACTGCGAACGAACTTCGTATG
310 ACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCATATG
* * * * * * *
16193854 CTTAGACATGGAATGGATTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGAC-TGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGCGCTCAGC
*
16193919 CGGTCGAAGAGGCA
65 CGGTCGGAGAGGCA
16193933 AAATCCGCAA
Statistics
Matches: 661, Mismatches: 101, Indels: 78
0.79 0.12 0.09
Matches are distributed among these distances:
341 43 0.07
342 10 0.02
344 1 0.00
345 2 0.00
354 58 0.09
355 180 0.27
356 14 0.02
357 2 0.00
359 5 0.01
361 2 0.00
362 1 0.00
363 6 0.01
364 5 0.01
365 7 0.01
366 109 0.16
367 62 0.09
368 152 0.23
369 2 0.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (354 bp):
CTTAGACTGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGCGCTCAGCC
GGTCGGAGAGGCATAATGCATAAGTCGAGGATCAGCCCGATCCCCCTCTACGTGCTACCGATCTC
GCTATCGGTCCTGCTACCACAACCCTCAGTCAAACTGGGGCTTAGACATGGAATGAACTCCGTAT
GCCTAAGCCAACCCATGAAATGAGCGTGCAGGCGCTCAGCCGACCGAAGAGGTAGAATGCGCAAG
CCGGGGATCAGCTCGGCCCCCTCATGTGTGCTACGATCTTGCTACCGCAACCCTCGATCCGATCT
GATCTTAGACTGGGAATGAACTCCATATG
Found at i:16194248 original size:159 final size:159
Alignment explanation
Indices: 16193853--16194248 Score: 363
Period size: 159 Copynumber: 2.5 Consensus size: 159
16193843 AACTTCGTAT
* * * *
16193853 GCTTAGACATGGAATGGATTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAA
* * * * * * *
16193918 CCGGTCGAAGAGGCAAAATCCGCAAGCTGGGGATTGGCTCGGTCCCCTCTTACGTGCTATCAATC
66 CTGGCCGAAGAGGCAAAATCCACAAGCTGGGGATTAGCCCGATCCCCTCTTACATGCTATCAATC
*** * *
16193983 TTGCTGCCACAACCCTCAGTCTGATCTGA
131 CCACTACCACAACCCTCAGTCTGAGCTGA
* * * * * * *
16194012 TCTTAGA-TTGGAATTGAACTTCGTACGCCTAAGTCAACCCACGAAACGAGG-GTGCAGGCGCT-
1 GCTTAGACATGGAA-TGAACTCCGTATGCCTAAGCCAACCCACGAAACG-GGCGTGCGGGTGCTC
* * * * * * * *
16194074 GAGTCGGCCGAAGAGGCATAATGCACAAGGC-GTGGATTAGCCCGAT-CCCTTTCTGCATGCTGT
64 AACT-GGCCGAAGAGGCAAAATCCACAA-GCTGGGGATTAGCCCGATCCCCTCT-TACATGCTAT
* * *
16194137 CAGTCCCACTACCACAACCCTCGGTCTG-GCTGGG
126 CAATCCCACTACCACAACCCTCAGTCTGAGCT-GA
*
16194171 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAA
* *
16194236 CTGACCGGAGAGG
66 CTGGCCGAAGAGG
16194249 TAGTACACGT
Statistics
Matches: 182, Mismatches: 46, Indels: 18
0.74 0.19 0.07
Matches are distributed among these distances:
158 14 0.08
159 158 0.87
160 10 0.05
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAA
CTGGCCGAAGAGGCAAAATCCACAAGCTGGGGATTAGCCCGATCCCCTCTTACATGCTATCAATC
CCACTACCACAACCCTCAGTCTGAGCTGA
Found at i:16194362 original size:26 final size:26
Alignment explanation
Indices: 16194322--16194372 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16194312 CCCTCGATCC
*
16194322 TAGACTAGGAGTGAACTCTGTATGCT
1 TAGACTAGGAGTGAACTCCGTATGCT
16194348 TAGACT-GGAGATGAACTCCGTATGC
1 TAGACTAGGAG-TGAACTCCGTATGC
16194373 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 4 0.17
26 19 0.83
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTAGGAGTGAACTCCGTATGCT
Found at i:16194730 original size:26 final size:26
Alignment explanation
Indices: 16194701--16194753 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16194691 CCGGTCCGAT
16194701 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
16194727 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
16194753 C
1 C
16194754 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:16195652 original size:158 final size:156
Alignment explanation
Indices: 16195376--16196067 Score: 453
Period size: 158 Copynumber: 4.4 Consensus size: 156
16195366 CCGACCGGGG
* * * * * * * ** **
16195376 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCTACGAACCGAGCGTGCGGGCGCTCAGT
1 CTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTACGGGTACTCAAC
* * * *
16195441 CAGTCGCAGAGGCAAAATGCACAAGCGGGGGATCAGCCCGATCCCCCTCTGTGTGCTGTCGATCC
66 CAGCCGAAGAGGCAAAATGCACAAGCCGGGGATC-GGCCGAT-CCCCTCTGTGTGCTGTCGATCC
*
16195506 TGCTGTCACAACTCTCGA-TCCGATCTGAT
129 TGCTGCCACAACTCTC-ACTCCG-TCTGAT
* * * * * *
16195535 CTTAGACAGGGAATGAACTCCGTATGCATAAGTCAAACCACAAAATGAGC-TGAC-GGTGCTGAG
1 CTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGT-ACGGGTACTCAA
* * *
16195598 CC-GACCGAAGAGGCATAATGCACAAGCCGGGGATCGGGCCGATCACCCTCTGTGTGCTGCCGGT
65 CCAG-CCGAAGAGGCAAAATGCACAAGCCGGGGATC-GGCCGATC-CCCTCTGTGTGCTGTCGAT
** * * * **
16195662 CCCACTACCACAACCCTCACTCCGGCTAGGG
127 CCTGCTGCCACAACTCTCACTCCGTCT-GAT
* * * * * *
16195693 CTTAGACATGGAATCAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGTACTCAAC
1 CTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTACGGGTACTCAAC
* * * * * * * * *
16195758 CAGCCGGAGAGGCAGAATGCGCAAGTCAGGGATCGGCCCAGTCCCCTCTGCGTGCTGTCAATCTT
66 CAGCCGAAGAGGCAAAATGCACAAGCCGGGGATCGGCCGA-TCCCCTCTGTGTGCTGTCGATCCT
*
16195823 GCTGCCACAACTCTCAGTCCAGT-TCGAT
130 GCTGCCACAACTCTCACTCC-GTCT-GAT
** * * * * **
16195851 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGGGCATGCGGGCGCT-AAG
1 CTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTACGGGTACTCAA-
*** * * * * * ** * *
16195915 TGGGCCAAAAAAGGCATAATACGCAAGCCGGGGATCAACCCAGTCCCCCTCTGTGTGCTG-CCAG
65 CCAGCC-GAAGAGGCAAAATGCACAAGCCGGGGATCGGCCGA-T-CCCCTCTGTGTGCTGTCGA-
* * * * **
16195979 TCCTGCTGCCACAACCCTCAGTCTGGCTGGGG
126 TCCTGCTGCCACAACTCTCACTCCGTCT-GAT
* * * ** *
16196011 CGTAGACATGGAATGAACTCCCTATGCCTAAGGAAACCCACGAAACGAGCGTACGGG
1 CTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTACGGG
16196068 CGCTCGACCC
Statistics
Matches: 416, Mismatches: 102, Indels: 29
0.76 0.19 0.05
Matches are distributed among these distances:
157 7 0.02
158 213 0.51
159 111 0.27
160 85 0.20
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.18
Consensus pattern (156 bp):
CTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTACGGGTACTCAAC
CAGCCGAAGAGGCAAAATGCACAAGCCGGGGATCGGCCGATCCCCTCTGTGTGCTGTCGATCCTG
CTGCCACAACTCTCACTCCGTCTGAT
Found at i:16196024 original size:318 final size:317
Alignment explanation
Indices: 16195217--16196068 Score: 865
Period size: 317 Copynumber: 2.6 Consensus size: 317
16195207 TAAACTGGGG
* * * * * ** *
16195217 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCAT-ACGGGCGCTCAGCCGATCGGAGAG
1 ATGAACTCCGTATGCATAAGTCAAACCACAAAACGAGC-TGAC-GGCGCTAAGCCGACCAAAAAG
* * *
16195281 GCATAATACACAAGCCGAGGATCAACCCGATCCCCCTCTATGTGCTATCGATCCCGTTGTAGGTC
64 GCATAATACACAAGCCGGGGATCAACCCGATCACCCTCTGTGTGC--T-G---CC-----A-GTC
* * * *
16195346 CCACTGCCACAACCCTCAGTCCGACCGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCA
117 CCACTGCCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * * * ** * *
16195411 ACCTACGAACCGAGCGTGCGGGCGCTCAGTCAGTCGCAGAGGCAAAATGCACAAGCGGGGGATCA
182 ACCCACGAAACGAGCGTACGGGCACTCAACCAGCCGCAGAGGCAAAATGCACAAGCGAGGGATCA
* * *
16195476 GCCCGATCCCCCTCTGTGTGCTGTCGATCCTGCTGTCACAACTCTCGATCCGATCTGATCTTAGA
247 GCCCGATCCCCCTCTGCGTGCTGTCAATCCTGCTGCCACAACTCTCGATCCGATCTGATCTTAGA
16195541 CAGGGA
312 CAGGGA
* * * * *
16195547 ATGAACTCCGTATGCATAAGTCAAACCACAAAATGAGCTGACGGTGCTGAGCCGACCGAAGAGGC
1 ATGAACTCCGTATGCATAAGTCAAACCACAAAACGAGCTGACGGCGCTAAGCCGACCAAAAAGGC
* *** * *
16195612 ATAATGCACAAGCCGGGGATCGGGCCGATCACCCTCTGTGTGCTGCCGGTCCCACTACCACAACC
66 ATAATACACAAGCCGGGGATCAACCCGATCACCCTCTGTGTGCTGCCAGTCCCACTGCCACAACC
* * * *
16195677 CTCACTCCGGCTAGGGCTTAGACATGGAATCAACTCCCTATGCCTAAGCCAACCCACGAAACGGG
131 CTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAG
* * * * *
16195742 CGTACGGGTACTCAACCAGCCGGAGAGGCAGAATGCGCAAGTC-AGGGATCGGCCC-AGT-CCCC
196 CGTACGGGCACTCAACCAGCCGCAGAGGCAAAATGCACAAG-CGAGGGATCAGCCCGA-TCCCCC
* * **
16195804 TCTGCGTGCTGTCAATCTTGCTGCCACAACTCTC-AGTCCAGTTC-GATCTTAGATTGGGA
259 TCTGCGTGCTGTCAATCCTGCTGCCACAACTCTCGA-TCC-GATCTGATCTTAGACAGGGA
* * * * ** *
16195863 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGGGCATG-CGGGCGCTAAGTGGGCCAAAAAA
1 ATGAACTCCGTATGCATAAGTCAAACCACAAAACGAGC-TGAC-GGCGCTAAGCCGACC-AAAAA
* * **
16195927 GGCATAATACGCAAGCCGGGGATCAACCC-AGTCCCCCTCTGTGTGCTGCCAGTCCTGCTGCCAC
63 GGCATAATACACAAGCCGGGGATCAACCCGA-TCACCCTCTGTGTGCTGCCAGTCCCACTGCCAC
* * **
16195991 AACCCTCAGTCTGGCTGGGGCGTAGACATGGAATGAACTCCCTATGCCTAAGGAAACCCACGAAA
127 AACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
16196056 CGAGCGTACGGGC
192 CGAGCGTACGGGC
16196069 GCTCGACCCG
Statistics
Matches: 437, Mismatches: 76, Indels: 30
0.80 0.14 0.06
Matches are distributed among these distances:
315 1 0.00
316 85 0.19
317 130 0.30
318 125 0.29
323 2 0.00
326 1 0.00
327 1 0.00
329 56 0.13
330 36 0.08
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.18
Consensus pattern (317 bp):
ATGAACTCCGTATGCATAAGTCAAACCACAAAACGAGCTGACGGCGCTAAGCCGACCAAAAAGGC
ATAATACACAAGCCGGGGATCAACCCGATCACCCTCTGTGTGCTGCCAGTCCCACTGCCACAACC
CTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAG
CGTACGGGCACTCAACCAGCCGCAGAGGCAAAATGCACAAGCGAGGGATCAGCCCGATCCCCCTC
TGCGTGCTGTCAATCCTGCTGCCACAACTCTCGATCCGATCTGATCTTAGACAGGGA
Found at i:16197159 original size:159 final size:159
Alignment explanation
Indices: 16196869--16197371 Score: 392
Period size: 159 Copynumber: 3.2 Consensus size: 159
16196859 ACTTCGTATG
* *
16196869 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGAGCTCAGC
1 CTTAGACAGGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGAGCTCAGC
* * * * *
16196934 CGGTCGGAGACGCAGAATGCACAAGCCAGGGATTCGCTCGGTCCCCCCCAACGTGCTGTCGATCC
66 CGGCCGAAGACGCAGAATGCACAAGCCAGGGATTCGCTCGGTCCCCCCCAACCTACTGCCGATCC
16196999 TGCTGCCACAACCCTTGATCCAATCCAAT
131 TGCTGCCACAACCCTTGATCCAATCCAAT
* ** * * * *
16197028 CTTAGATAGGGAATGAACTCTGTATGCCTAAGTCTACCCATGAAACAAGTGTGC-GGACGCTGAG
1 CTTAGACAGGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGA-GCTCAG
* * * * * * * * *
16197092 CCGGCCGAAGAGGCATAATGCGCAAGTCGGGGA-TCGGTCCGGTCCCCCTCTACCTACTGCCGGT
65 CCGGCCGAAGACGCAGAATGCACAAGCCAGGGATTCGCT-CGGTCCCCCCCAACCTACTGCCGAT
* * ****
16197156 CCTGCTGCCACAACCCTCAGTTTGCC--T-GGGG
129 CCTGCTGCCACAACCCT-TG-AT-CCAATCCAAT
* * * * * ** *
16197187 CTTAGACATGGAATGAACTCCCTATGCCTAATCCAAACCACGAAACGGGCG-GACGGGCGCTCAG
1 CTTAGACAGGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACAAGCGTG-CGGGAGCTCAG
* * * * ** * * * * * * *
16197251 CCAGCTGAAGAGGTAGAATGTGCAAGCCGGGGA-TCAGCCCGAT-CCCCCCTACGTGCTGTCGAT
65 CCGGCCGAAGACGCAGAATGCACAAGCCAGGGATTC-GCTCGGTCCCCCCCAACCTACTGCCGAT
* * *
16197314 CCTGCTGCCACAACCCTCGGTCCAATCCGAT
129 CCTGCTGCCACAACCCTTGATCCAATCCAAT
* *
16197345 CTTAGACTGGGAATGAACTTCATATGC
1 CTTAGACAGGGAATGAACTCCATATGC
16197372 TTAGACTGGG
Statistics
Matches: 267, Mismatches: 66, Indels: 23
0.75 0.19 0.06
Matches are distributed among these distances:
155 2 0.01
156 1 0.00
157 2 0.01
158 64 0.24
159 190 0.71
160 5 0.02
161 1 0.00
162 2 0.01
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (159 bp):
CTTAGACAGGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGAGCTCAGC
CGGCCGAAGACGCAGAATGCACAAGCCAGGGATTCGCTCGGTCCCCCCCAACCTACTGCCGATCC
TGCTGCCACAACCCTTGATCCAATCCAAT
Found at i:16197396 original size:26 final size:26
Alignment explanation
Indices: 16197345--16197397 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16197335 CCAATCCGAT
*
16197345 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
16197371 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16197397 C
1 C
16197398 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16198234 original size:159 final size:157
Alignment explanation
Indices: 16197837--16198287 Score: 386
Period size: 158 Copynumber: 2.8 Consensus size: 157
16197827 TGTGTGATGC
* * *
16197837 CAGTCCCACTGCCACAACCCTCGCTCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTA
1 CAGTCCCGCTGCCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCATATGCCTA
* * ** ** * * *
16197902 AGCCAACCCATGAAATGGACGTGCGGGTGCTCAACCGGTCGAAGAGGCAAAATGCGCAGGCCAGG
66 AGCCAACCCATGAAACGG-CGTCCGGGCACTCAACCGACCAAAAAGGCAAAATGCGCAAGCCAGG
16197967 GATCGACCCGGTCCCCCCTGCGTGCTAT
130 GATCGACCCGGTCCCCCCTGCGTGCTAT
* * ** * * * * ** *
16197995 C-GATCCTGCTACTGCAACTCTCAGTCTGATTCA-ATCTTAGAC-TGGGAATGAACTCCGTATGC
1 CAG-TCCCGCTGCCACAACCCTCGGTCCGACT-AGGGCTTAGACAT-GGAATGAACTCCATATGC
* * * * * * * * *
16198057 ATAAGTCAACCCACGAAACGAGCGTCCGGGCATTGAGCTGACCAAAAAGGCATAATGCGCAAGCT
63 CTAAGCCAACCCATGAAACG-GCGTCCGGGCACTCAACCGACCAAAAAGGCAAAATGCGCAAGCC
* * * * *
16198122 AGGGATTGACCTGGTCCCCCTTTGCTTGCTGT
127 AGGGATCGACCCGGTCCCCC-CTGCGTGCTAT
* *
16198154 CAGTCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCATATGCCTA
1 CAGTCCCGCTGCCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCATATGCCTA
* * * * * ** * *
16198219 AGCCAACCCATGAAACGGGCGTACGGACGCTCGACCGATCGGAGAGGCAAAATGCGCAAGCCGGG
66 AGCCAACCCATGAAAC-GGCGTCCGGGCACTCAACCGACCAAAAAGGCAAAATGCGCAAGCCAGG
16198284 GATC
130 GATC
16198288 CGTCCGGACC
Statistics
Matches: 216, Mismatches: 68, Indels: 17
0.72 0.23 0.06
Matches are distributed among these distances:
157 2 0.01
158 106 0.49
159 105 0.49
160 3 0.01
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.18
Consensus pattern (157 bp):
CAGTCCCGCTGCCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCATATGCCTA
AGCCAACCCATGAAACGGCGTCCGGGCACTCAACCGACCAAAAAGGCAAAATGCGCAAGCCAGGG
ATCGACCCGGTCCCCCCTGCGTGCTAT
Found at i:16198306 original size:317 final size:317
Alignment explanation
Indices: 16197517--16198373 Score: 1013
Period size: 317 Copynumber: 2.7 Consensus size: 317
16197507 TCGATCCCGT
* *
16197517 TGCCAGTCCCGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCGTATGC
1 TGCCAGTCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCATATGC
* * * * * *
16197582 CTAAGCCAACTCACGAAATGAGCGTGCGGGTGCTCAACCGGTTGGAGAGGCAGAATGCACAAGCC
66 CTAAGCCAACCCATGAAATGGGCGTGCGGGTGCTCAACCGGTCGGAGAGGCAAAATGCGCAAGCC
* * * ** * * *
16197647 GAGGATCGGTCTGGTCCCCCCCACGTGCTATCGATCCTTCTACCGTAACCCTTGATCTGATCCAA
131 GGGGATCCGTCCGGTCCCCCCTGCGTGCTATCGATCCTGCTACCGCAACCCTAGATCTGATCCAA
* * *
16197712 TCTTAGATTGGGAATGAACTCTGTATGCATAAGTCAAACCACAGAATGAGCCTACGGGCACTGAG
196 TCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAAACCACAGAACGAGCCTACGGGCACTGAG
* * *
16197777 CCGACCGAAGAGGCATAATGCGCAAGTCACGCATCGGCCTAATCCCCCTCTGTGTGA
261 CCGACCAAAAAGGCATAATGCGCAAGTCACGCATCGACCTAATCCCCCTCTGTGTGA
* * * * *
16197834 TGCCAGTCCCACTGCCACAACCCTCGCTCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGC
1 TGCCAGTCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCATATGC
* * *
16197899 CTAAGCCAACCCATGAAATGGACGTGCGGGTGCTCAACCGGTCGAAGAGGCAAAATGCGCAGGCC
66 CTAAGCCAACCCATGAAATGGGCGTGCGGGTGCTCAACCGGTCGGAGAGGCAAAATGCGCAAGCC
* * * * *
16197964 AGGGAT-CGACCCGGTCCCCCCTGCGTGCTATCGATCCTGCTACTGCAACTCTCAG-TCTGATTC
131 GGGGATCCG-TCCGGTCCCCCCTGCGTGCTATCGATCCTGCTACCGCAACCCT-AGATCTGATCC
* * * *
16198027 AATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCAC-GAAACGAGCGTCCGGGCATT
194 AATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAAACCACAG-AACGAGCCTACGGGCACT
* * * * ** * *
16198091 GAGCTGACCAAAAAGGCATAATGCGCAAG-CTAGGGATTGACCTGGTCCCCCTTTGCT-TGC
258 GAGCCGACCAAAAAGGCATAATGCGCAAGTC-ACGCATCGACCTAATCCCCCTCTG-TGTGA
*
16198151 TGTCAGTCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCATATGC
1 TGCCAGTCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCATATGC
* * ** * *
16198216 CTAAGCCAACCCATGAAACGGGCGTACGGACGCTCGACCGATCGGAGAGGCAAAATGCGCAAGCC
66 CTAAGCCAACCCATGAAATGGGCGTGCGGGTGCTCAACCGGTCGGAGAGGCAAAATGCGCAAGCC
* * * * * ** * * * * * **
16198281 GGGGATCCGTCCGGACCCTCCTGCGTACTGTCGATTCTGCTGTCGTAACCCTTGGTCCGGTCGGA
131 GGGGATCCGTCCGGTCCCCCCTGCGTGCTATCGATCCTGCTACCGCAACCCTAGATCTGATCCAA
*
16198346 TCTTAGACTGGGAATGAACTCTGTATGC
196 TCTTAGACTGGGAATGAACTCCGTATGC
16198374 TTAGATTGGG
Statistics
Matches: 453, Mismatches: 80, Indels: 14
0.83 0.15 0.03
Matches are distributed among these distances:
316 4 0.01
317 445 0.98
318 4 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (317 bp):
TGCCAGTCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCATATGC
CTAAGCCAACCCATGAAATGGGCGTGCGGGTGCTCAACCGGTCGGAGAGGCAAAATGCGCAAGCC
GGGGATCCGTCCGGTCCCCCCTGCGTGCTATCGATCCTGCTACCGCAACCCTAGATCTGATCCAA
TCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAAACCACAGAACGAGCCTACGGGCACTGAG
CCGACCAAAAAGGCATAATGCGCAAGTCACGCATCGACCTAATCCCCCTCTGTGTGA
Found at i:16198383 original size:26 final size:26
Alignment explanation
Indices: 16198347--16198398 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
16198337 CCGGTCGGAT
*
16198347 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
* **
16198373 CTTAGATTGGGGTTGAACTCTATATG
1 CTTAGACTGGGAATGAACTCTATATG
16198399 TCTAAGTCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.13, G:0.27, T:0.35
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:16199108 original size:26 final size:26
Alignment explanation
Indices: 16199057--16199109 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16199047 GGCTCAAAAT
*
16199057 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16199083 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
16199109 C
1 C
16199110 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16199381 original size:183 final size:184
Alignment explanation
Indices: 16199055--16199397 Score: 505
Period size: 183 Copynumber: 1.9 Consensus size: 184
16199045 ATGGCTCAAA
* *
16199055 ATCTTAGACTGGGAATGAACTTCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
1 ATCTTAAACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * *
16199120 CCACGAAACGAGCGTGCGGGCGTTCAGTCGGTCGGAAAGGCAGAATGCATAATCCGGGGATCGAC
66 CCACGAAACGAGCGTACGGGCGCTCAGACGGCCGGAAAGGCAGAATGCATAATCCGGGGATAGAC
*
16199185 CCAGTCACCCCTACGTGTTGTCGATCCTGCGGCCACAACCCTCGGCTCGGTCCG
131 CCAGTCACCCCTACGTGCTGTCGATCCTGCGGCCACAACCCTCGGCTCGGTCCG
* *
16199239 ATCTTAAATTGGGAATGAACTCCGTATGCTTAGACATGGAATG-ACTCCGTATGCCTAAGCCAAC
1 ATCTTAAACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* *
16199303 CCACGAAAGGAGCGTACGGGCGCTCAGACGGCCGGAGAGGCAGAATGTGCA-AA-CCGGGGATAG
66 CCACGAAACGAGCGTACGGGCGCTCAGACGGCCGGAAAGGCAGAA--TGCATAATCCGGGGATAG
* *
16199366 A-CCTGATCCCCCCTACGTGCTGTCGATCCTGC
129 ACCCAG-TCACCCCTACGTGCTGTCGATCCTGC
16199398 TGCAGAAACC
Statistics
Matches: 142, Mismatches: 14, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
182 3 0.02
183 94 0.66
184 41 0.29
185 4 0.03
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.20
Consensus pattern (184 bp):
ATCTTAAACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
CCACGAAACGAGCGTACGGGCGCTCAGACGGCCGGAAAGGCAGAATGCATAATCCGGGGATAGAC
CCAGTCACCCCTACGTGCTGTCGATCCTGCGGCCACAACCCTCGGCTCGGTCCG
Found at i:16199841 original size:26 final size:26
Alignment explanation
Indices: 16199802--16199854 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16199792 CCGGTCTGAT
16199802 CTTAGACTGTGAATGAACTCCGTATG
1 CTTAGACTGTGAATGAACTCCGTATG
*
16199828 CTTAGACATG-GAATTAACTCCGTATG
1 CTTAGAC-TGTGAATGAACTCCGTATG
16199854 C
1 C
16199855 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTGTGAATGAACTCCGTATG
Found at i:16200353 original size:26 final size:26
Alignment explanation
Indices: 16200302--16200354 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16200292 CCAGTCTGAT
* *
16200302 CTTAGACTAGGAATGAACTTTGTATG
1 CTTAGACTAGGAATGAACTCTATATG
* *
16200328 CTTAGACTGGGGATGAACTCTATATG
1 CTTAGACTAGGAATGAACTCTATATG
16200354 C
1 C
16200355 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTATATG
Found at i:16202349 original size:159 final size:157
Alignment explanation
Indices: 16202060--16202562 Score: 476
Period size: 159 Copynumber: 3.2 Consensus size: 157
16202050 ACTCCGCATG
* * *
16202060 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATGAACATGC-AGGCGCTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGA-GCGCTCAG
* * * * * * **
16202124 CCGGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGGTCCCTCCATGCTTGCTGTTGATC
65 CCGATCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCC-CCCTGCGTGCTGCCGATC
* *
16202189 TTACTGCCACAACCCTCAGTCCGGTCTGAT
129 TTGCTGCCACAACCCTCGGT-CGGTCTGAT
* ** * *
16202219 CTTAGAC-TGGGAATGAACTCCGTATGCATAATTCAACCCACGAAACGAGCATGCGAGCACTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGAGCGCTCAG
* * * * *
16202283 TCGATCGAAGAGGCATAATGTGCAAGCCGGGGATCGGCCTGGTCCCCCTCTACGTGCTGCCGATC
65 CCGATCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCC-CTGCGTGCTGCCGATC
* * * * **
16202348 TTGTTGCCACAACCCTTGGTCTGACTAGGG
129 TTGCTGCCACAACCCTCGGTCGGTCT-GAT
* * * * * *
16202378 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACG-GGAGTGTGGGCGCTCAA
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCA-TGCGAGCGCTCAG
* * ** * *
16202442 CCGA-CCAGAGAGGCAGAATGCGCAAGCCGGGGATTGGCCCAATCCCCCCTGTGTGCTGGCGATC
65 CCGATCGA-AGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATC
* * *
16202506 TTGCTACCGCAACCCTCGGTTCGGTCCGAT
129 TTGCTGCCACAACCCTCGG-TCGGTCTGAT
*
16202536 CTTAGAC-TAGGAATGAACTCCATATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
16202563 TTAGATTGGG
Statistics
Matches: 274, Mismatches: 61, Indels: 19
0.77 0.17 0.05
Matches are distributed among these distances:
157 1 0.00
158 64 0.23
159 207 0.76
160 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGAGCGCTCAGC
CGATCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGCCGATCTT
GCTGCCACAACCCTCGGTCGGTCTGAT
Found at i:16203284 original size:159 final size:157
Alignment explanation
Indices: 16202928--16203290 Score: 373
Period size: 158 Copynumber: 2.3 Consensus size: 157
16202918 AACTCCATAT
16202928 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCTTGTGGGCACTCGA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGC-TGTGGGCACTCGA
* * * *
16202993 TCGGTCGAAGAGGCTGAATGCATAAGCCAGGGATCGGCCTGGTCCCCCCTGCATGCTATCGATCC
65 TAGGTCGAAGAGGCTGAATCCATAAGCCAGGGATCGGCCTGGTCCCCCCTACATGCGATCGATCC
* *
16203058 TGCTGCCGCAACCCTCGATCCGTTCCGA
130 TGCTGCCACAACCCTCGATCCGCTCCGA
* * * *
16203086 TCTTAGAC-TGGGAATGAACTCCGTATGCTTAAGTCAACCCATGAAATGAG-TGTGCGG-ACGTT
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCTGTG-GGCAC-TC
* * ** * * *
16203148 GAGTAGGTCGAAGAGGCAT-AATCCGTAAG-CTGAGGATC-GATTCGGTCCCTCTCTACTTGCGG
63 GA-TAGGTCGAAGAGGC-TGAATCCATAAGCCAG-GGATCGGCCT-GGTCCC-CCCTACATGCGA
* * * *
16203210 TCGGT-CTCGCTGCCACAACCCTCGGTCCGGCT-GGG
123 TCGATCCT-GCTGCCACAACCCTCGATCC-GCTCCGA
*
16203245 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA
16203291 CGGGTGTGTG
Statistics
Matches: 169, Mismatches: 25, Indels: 21
0.79 0.12 0.10
Matches are distributed among these distances:
156 6 0.04
157 10 0.06
158 79 0.47
159 71 0.42
160 3 0.02
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCTGTGGGCACTCGAT
AGGTCGAAGAGGCTGAATCCATAAGCCAGGGATCGGCCTGGTCCCCCCTACATGCGATCGATCCT
GCTGCCACAACCCTCGATCCGCTCCGA
Found at i:16203433 original size:26 final size:26
Alignment explanation
Indices: 16203404--16203456 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16203394 CCGGTCTGAT
16203404 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
16203430 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16203456 C
1 C
16203457 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16210400 original size:175 final size:175
Alignment explanation
Indices: 16210104--16210442 Score: 398
Period size: 175 Copynumber: 1.9 Consensus size: 175
16210094 AACGAGCGTG
* * * * *
16210104 CGGGTGCTCAGTCGGTCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCT
1 CGGGTGCTCAGTCGGTCGAAGAGGTAGAATGCACAAACCGGGGATCGGCCCGATCCCCCTCTGCG
* ** * * * *
16210169 TGCTGTCGATCCTACTGTCGCAACCCTTGGTCCGGTCTGATCTTAGGCTGGGAATGAACT-CTGT
66 TGCTGTCGATCCCACTACCACAACCCTCGGTCCGGTCTGAGCTTAGACTGGGAATGAACTCCT-T
* *
16210233 ATGCCTAAGTCAACCCATAAAAAAAGCGTGCGGGCGCTAAGTCGGT
130 ATGCCTAAGCCAACCCACAAAAAAAGCGTGCGGGCGCTAAGTCGGT
* * *
16210279 CGGGTGCTGAGTCGGTCGAAGAGG-CGTAATGCACAAACCGGGGATCGGCCCGATCCCCCTCTTC
1 CGGGTGCTCAGTCGGTCGAAGAGGTAG-AATGCACAAACCGGGGATCGGCCCGATCCCCCTCTGC
* * * *
16210343 GTGCTGTCGGTCCCGCTACCACAACCCTCGGTCTGG-CTAGGGCTTAGAC-GTGGAATGAACTCC
65 GTGCTGTCGATCCCACTACCACAACCCTCGGTCCGGTCT-GAGCTTAGACTG-GGAATGAACTCC
* * *
16210406 TTATGCCTAAGCCAACCCACGAAATAGGCGTGCGGGC
128 TTATGCCTAAGCCAACCCACAAAAAAAGCGTGCGGGC
16210443 ACTCAGCCGA
Statistics
Matches: 136, Mismatches: 24, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
174 4 0.03
175 130 0.96
176 2 0.01
ACGTcount: A:0.20, C:0.29, G:0.30, T:0.21
Consensus pattern (175 bp):
CGGGTGCTCAGTCGGTCGAAGAGGTAGAATGCACAAACCGGGGATCGGCCCGATCCCCCTCTGCG
TGCTGTCGATCCCACTACCACAACCCTCGGTCCGGTCTGAGCTTAGACTGGGAATGAACTCCTTA
TGCCTAAGCCAACCCACAAAAAAAGCGTGCGGGCGCTAAGTCGGT
Found at i:16210565 original size:17 final size:17
Alignment explanation
Indices: 16210539--16210571 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
16210529 CGGTCCGGTT
*
16210539 TGATCGTACACTGGGAA
1 TGATCATACACTGGGAA
16210556 TGATCATACACTGGGA
1 TGATCATACACTGGGA
16210572 TCGGCCTGGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.24
Consensus pattern (17 bp):
TGATCATACACTGGGAA
Found at i:16211134 original size:158 final size:157
Alignment explanation
Indices: 16210590--16211126 Score: 438
Period size: 158 Copynumber: 3.4 Consensus size: 157
16210580 GTCCCCCCCA
* * * * * * *
16210590 GCGTGCTATCGATCCTACTGCTGTAACCCTCAACCCGGTCTAATCTTAGACTGGGAATGAACTTC
1 GCGTGCTATCGATCCTACTGCCGCAACCCTCGATCCGATCCAATCTTAGACTGGGAATGAACTCC
* * * *** ** * *
16210655 GTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGTGCTCAGTTGGTTAGAGAGGTAGAATGCA
66 GTATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCGCTCAACCGGTCGGAGAGGCAGAATGCG
* * *
16210720 TAAGCCGTGGATCGACCCGGTCCCCCCT
131 CAAGCCGAGGATCG-CCCGGTCCCCTCT
* * * * * * * *
16210748 GTGTGCTGTCAATCCTGCTGTCGCAACCCTCGGTCTGATCCAATCTTAGACTGGGAATAAACTCC
1 GCGTGCTATCGATCCTACTGCCGCAACCCTCGATCCGATCCAATCTTAGACTGGGAATGAACTCC
* * * *
16210813 GTATGCCTACA-TCAACCCAC-AAAAGAAGCGTGCGGGCGCT-AAGCCGATCGAAGAGGCATAAT
66 GTATGCCTA-AGCCAACCCACGAAAAG-AGCGTGCGGGCGCTCAA-CCGGTCGGAGAGGCAGAAT
*
16210875 GCGCAAGCCGAAGATCGGCCCGGTCCCCCTCT
128 GCGCAAGCCGAGGATC-GCCCGGT-CCCCTCT
* * ** * * ***** *
16210907 GCATGCTGTC-AGTCCCGCTGCCACAACCCTCGGTCCGA-CTGGGGTTAGACAT-GGAATGAAAT
1 GCGTGCTATCGA-TCCTACTGCCGCAACCCTCGATCCGATCCAATCTTAGAC-TGGGAATGAACT
* * * * *
16210969 CCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAACCGGCCGGAGAGACAGAATG
64 CCGTATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCGCTCAACCGGTCGGAGAGGCAGAATG
* * *
16211034 CGCAACCCGAGGATCAGCCCGATCCCCTTT
129 CGCAAGCCGAGGATC-GCCCGGTCCCCTCT
* * * *
16211064 ACGTGCTATCGATCCTACTGCCGCAACCCTCGATCCAATCCGATCTTAGACTGAGAATGAACT
1 GCGTGCTATCGATCCTACTGCCGCAACCCTCGATCCGATCCAATCTTAGACTGGGAATGAACT
16211127 TCATATGCTT
Statistics
Matches: 292, Mismatches: 74, Indels: 26
0.74 0.19 0.07
Matches are distributed among these distances:
157 41 0.14
158 206 0.71
159 45 0.15
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.20
Consensus pattern (157 bp):
GCGTGCTATCGATCCTACTGCCGCAACCCTCGATCCGATCCAATCTTAGACTGGGAATGAACTCC
GTATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCGCTCAACCGGTCGGAGAGGCAGAATGCG
CAAGCCGAGGATCGCCCGGTCCCCTCT
Found at i:16211887 original size:26 final size:26
Alignment explanation
Indices: 16211841--16211893 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
16211831 GCCTCAAACT
* *
16211841 CTTAGACTGGGAATGAGCTCCGCATG
1 CTTAGACTGGGAATAAACTCCGCATG
*
16211867 CTTAGACAT-GGAATAAACTCCGTATG
1 CTTAGAC-TGGGAATAAACTCCGCATG
16211893 C
1 C
16211894 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGCATG
Found at i:16212235 original size:26 final size:26
Alignment explanation
Indices: 16212184--16212236 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16212174 GCAGTCTAAT
*
16212184 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
16212210 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16212236 C
1 C
16212237 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16212431 original size:26 final size:26
Alignment explanation
Indices: 16212402--16212471 Score: 122
Period size: 26 Copynumber: 2.7 Consensus size: 26
16212392 TCTTAGATTG
16212402 GGAATGAACTCCGTATGCTTAGACAT
1 GGAATGAACTCCGTATGCTTAGACAT
16212428 GGAATGAACTCCGTATGCTTAGACAT
1 GGAATGAACTCCGTATGCTTAGACAT
* *
16212454 GGAATGAAATCCCTATGC
1 GGAATGAACTCCGTATGC
16212472 CTAAGCCAAC
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26
Consensus pattern (26 bp):
GGAATGAACTCCGTATGCTTAGACAT
Found at i:16213361 original size:26 final size:26
Alignment explanation
Indices: 16213323--16213375 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16213313 GGCTCAAACT
*
16213323 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16213349 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
16213375 C
1 C
16213376 CTAAGATAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16213703 original size:26 final size:26
Alignment explanation
Indices: 16213667--16213719 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16213657 CCTATCCGAT
*
16213667 CTTAGACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
*
16213693 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
16213719 C
1 C
16213720 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:16213950 original size:343 final size:343
Alignment explanation
Indices: 16213322--16214103 Score: 876
Period size: 343 Copynumber: 2.3 Consensus size: 343
16213312 TGGCTCAAAC
* * *
16213322 TCTTAGACTAGGAATGAACTTCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGATAAA
1 TCTTAGACTAGGAATGAACTCCGTATGCTTACAC-TGGGAATGAACTCCGTATGCCTAAG-TCAA
* * *
16213386 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGAAAATGAAGAATGCGTAAGCCGAGGATCGA
64 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGATCGAAAAGGAAGAATGCGCAAGCCGAGGATCGA
* * * * ** *
16213451 CCCAATCCCCTTCTGCGTTCTACCAGTTCCACTGCCACAACCCTCGGTCCGGCTGGGGCTTAGAC
129 CCCAATCCCCCTCTACGTGCTACCAGTCCCACTGCCACAACCCTCAATCCAGCTGGGGCTTAGAC
* * **
16213516 ATGGAATTATCTCCCTATGCCAAAGCCAATCCACGAAAAGGGCGTACGGGCCCTCAACCGTCCGG
194 ATGGAATGAACTCCCTATGCCAAAGCCAATCCACGAAAAGGGCGTACGGGCCCTCAACAATCCGG
* * * *
16213581 AGAGGCAGAATGTGCAAGTCGGGGATCGACCCGATCCCCCCTGCGTGCTG-CTGATCCTGCTGTC
259 AGAGGCAAAATGCGCAAGTCGGGGATCGACCCGATCCCCCCTACGTGCTGTC-GATCCTACTGTC
* ** * *
16213645 GCATCTTTCGATCCTATCCGA
323 GCAACCCTCGATCCGATCCAA
* *
16213666 TCTTAGACTGGGAATGAACTCCATATGCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACC
1 TCTTAGACTAGGAATGAACTCCGTATGCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * * * * * * * *
16213731 CACGAAATGAGCGTTCGGGTGTTGAGCCGATCGGAGAGGCATAATGCGCAAGTCGGGGATC-AGC
66 CACGAAACGAGCGTGCGGGCGCTCAGCCGATCGAAAAGGAAGAATGCGCAAGCCGAGGATCGA-C
** * *
16213795 CCGGTCCCCCTCTACGTGCTACCGGTCCCACTGCCACAACCCTCAATCCAGTTGGGGCTTAGACA
130 CCAATCCCCCTCTACGTGCTACCAGTCCCACTGCCACAACCCTCAATCCAGCTGGGGCTTAGACA
* * * * *
16213860 TGGAATGAACTCCCTATGCCTATGCCAA-CTCATGAAACA-GGCGTACGGGCGCTCAGTCAAT-C
195 TGGAATGAACTCCCTATGCCAAAGCCAATC-CACGAAA-AGGGCGTACGGGCCCTCA-ACAATCC
* * *
16213922 GGAGAGGCAAAATGCGTAAG-CTGGGGATCGGCCCGATCCTCCCTACGTGCTGTCGATCCTACTG
257 GGAGAGGCAAAATGCGCAAGTC-GGGGATCGACCCGATCCCCCCTACGTGCTGTCGATCCTACTG
* * *
16213986 TTGCAACCCTCGATCCGGTCTAA
321 TCGCAACCCTCGATCCGATCCAA
* * * * * *
16214009 TATTAGATTAGGAATGAACTCCGTATGCTTATACTGGGGATGAACTCCATATGCCTAAGTCAACT
1 TCTTAGACTAGGAATGAACTCCGTATGCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * *
16214074 CATGAAACGAGCGTGCGGGCACTCAACCGA
66 CACGAAACGAGCGTGCGGGCGCTCAGCCGA
16214104 CTGGAGAGGT
Statistics
Matches: 361, Mismatches: 70, Indels: 15
0.81 0.16 0.03
Matches are distributed among these distances:
342 3 0.01
343 301 0.83
344 57 0.16
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.21
Consensus pattern (343 bp):
TCTTAGACTAGGAATGAACTCCGTATGCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACC
CACGAAACGAGCGTGCGGGCGCTCAGCCGATCGAAAAGGAAGAATGCGCAAGCCGAGGATCGACC
CAATCCCCCTCTACGTGCTACCAGTCCCACTGCCACAACCCTCAATCCAGCTGGGGCTTAGACAT
GGAATGAACTCCCTATGCCAAAGCCAATCCACGAAAAGGGCGTACGGGCCCTCAACAATCCGGAG
AGGCAAAATGCGCAAGTCGGGGATCGACCCGATCCCCCCTACGTGCTGTCGATCCTACTGTCGCA
ACCCTCGATCCGATCCAA
Found at i:16214246 original size:26 final size:26
Alignment explanation
Indices: 16214208--16214260 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16214198 CTGATCCAAT
16214208 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16214234 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16214260 C
1 C
16214261 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16214435 original size:26 final size:26
Alignment explanation
Indices: 16214406--16214457 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16214396 CAGTCTGATT
16214406 TTAGAC-TGGGAATGAACTCTGTATGC
1 TTAGACAT-GGAATGAACTCTGTATGC
16214432 TTAGACATGGAATGAACTCTGTATGC
1 TTAGACATGGAATGAACTCTGTATGC
16214458 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCTGTATGC
Found at i:16214435 original size:197 final size:196
Alignment explanation
Indices: 16214209--16214563 Score: 559
Period size: 197 Copynumber: 1.8 Consensus size: 196
16214199 TGATCCAATC
16214209 TTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
1 TTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
*
16214274 CGAAACGAGCACGC-AGGCGCTCAATCGGTCGGAGAGGCAGAATGTGTAAGCCGACGATCGACCC
66 CGAAACGAGCACGCGA-GCGCTCAATCGGTCGGAGAGGCAGAATGTGCAAGCCGACGATCGACCC
16214338 GATCCCCCCTTGCATGCTGCCAATCCTACTGCTGGTCCTGCTATCGCAACCCTCGGCCCAGTCTG
130 GATCCCCCC-TGCATGCTGCCAATCCTACTGCTGGTCCTGCTATCGCAACCCTCGGCCCAGTCTG
16214403 ATT
194 ATT
* *
16214406 TTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCA
1 TTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
*** * * * *
16214471 CGAAACGAGTGTGCGAGCGCTCAGTCGGTCGGAGAGGTAGAATGTGCAAGCCGAGGATCGATCCG
66 CGAAACGAGCACGCGAGCGCTCAATCGGTCGGAGAGGCAGAATGTGCAAGCCGACGATCGACCCG
* * * *
16214536 GTCCCCCCTGCGTGCTGTCTATCCTACT
131 ATCCCCCCTGCATGCTGCCAATCCTACT
16214564 ATCGTAACCT
Statistics
Matches: 143, Mismatches: 14, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
196 17 0.12
197 125 0.87
198 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.21
Consensus pattern (196 bp):
TTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
CGAAACGAGCACGCGAGCGCTCAATCGGTCGGAGAGGCAGAATGTGCAAGCCGACGATCGACCCG
ATCCCCCCTGCATGCTGCCAATCCTACTGCTGGTCCTGCTATCGCAACCCTCGGCCCAGTCTGAT
T
Found at i:16214925 original size:158 final size:157
Alignment explanation
Indices: 16214431--16214932 Score: 473
Period size: 158 Copynumber: 3.2 Consensus size: 157
16214421 ACTCTGTATG
* * *
16214431 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGAGCGCTCAG-
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
16214495 TCGGTCGGAGAGGTAGAATGTGCAAGCCGAGGATCGATCCGGTCCCCCCTGCGTGCTGTCTATCC
66 T-GGTCGAAGAGGCAGAATGAGCAAGCCGAGGAT-GGTCCGGTCCCCCCTGCGTGCTGTCTATCC
* * * * * *
16214560 TACTATCGTAACCTTCGGTTCGGTCCGAT
129 TAGTGTCGCAACCCTCGGTCCGGTCTGAT
* * * * * *
16214589 CTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTTCGGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
16214653 CCGATCGAAAAGGC-GTAATGAGCAAGCTGAGGATCGGTCCGGTCCCCCTCTACGTGCTG-CTAG
65 CTGGTCGAAGAGGCAG-AATGAGCAAGCCGAGGAT-GGTCCGGTCCCCC-CTGCGTGCTGTCTA-
* * * * **
16214716 TCC-CGCTGCCACAACCCTCGGTCCAG-CTAGGG
126 TCCTAG-TGTCGCAACCCTCGGTCCGGTCT-GAT
* * * * *
16214748 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGAGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
16214813 TGGCCGAAGAGGCAGAATGCGCAAGCC-AGGGATAGG-CTCGATCCCCCCTGCGTGCTGTCGATC
66 TGGTCGAAGAGGCAGAATGAGCAAGCCGA-GGAT-GGTC-CGGTCCCCCCTGCGTGCTGTCTATC
16214876 CTAGTGTCGCAACCCTCGGTCCGGTCTGAT
128 CTAGTGTCGCAACCCTCGGTCCGGTCTGAT
16214906 CTTAGAC-TGAGAATGAACTCCGTATGC
1 CTTAGACATG-GAATGAACTCCGTATGC
16214933 TTAGACTGGG
Statistics
Matches: 271, Mismatches: 58, Indels: 30
0.75 0.16 0.08
Matches are distributed among these distances:
157 4 0.01
158 149 0.55
159 116 0.43
160 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
TGGTCGAAGAGGCAGAATGAGCAAGCCGAGGATGGTCCGGTCCCCCCTGCGTGCTGTCTATCCTA
GTGTCGCAACCCTCGGTCCGGTCTGAT
Found at i:16214935 original size:26 final size:26
Alignment explanation
Indices: 16214906--16214958 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16214896 CCGGTCTGAT
*
16214906 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCATATG
* *
16214932 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
16214958 C
1 C
16214959 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:16215137 original size:26 final size:26
Alignment explanation
Indices: 16215108--16215160 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16215098 CCGATCTGAT
*
16215108 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
16215134 CTTAGACATGGAATGAATTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
16215160 C
1 C
16215161 CTAAGCCATC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:16215529 original size:703 final size:696
Alignment explanation
Indices: 16214121--16215685 Score: 1780
Period size: 703 Copynumber: 2.2 Consensus size: 696
16214111 GGTCGATCAG
* * * * * * * *
16214121 AGAGGTAGAATGTGCAAGTCAGGGATCGAC-CCAGTCACCCTCTGCATGCTGTCGATCCTGCTGC
1 AGAGGCAGAATGCGCAAGCCAGGGATCAACTCGA-TC-CCCCCTGCGTGCTGTCGATCCTGCTGT
* * * ** *
16214185 CGCAACCCTCGATCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATG
64 CGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGGATG
* *
16214249 AACTCCGTATGCCTAAGCCAACCCACGAAACGAGCACGCAGGCGCTCAATCGGTCGGAGAGGCAG
128 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCACGCAGCCGCTCAATCGGTCGGAGAGGCAG
*
16214314 AATGTGTAAGCCGACGATCGACCCGATCCCCCCTTGCATGCTGCCAATCCTACTGCTGGTCCTGC
193 AATGTGCAAGCCGACGATCGACCCGATCCCCCCTTGCATGCTGCCAATCCTACTGCTGGTCCTGC
*
16214379 TATCGCAACCCTCGGCCCAGTCTGATTTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAA
258 TATCGCAACCCTCGG--CAGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAA
* * * * * **
16214444 TGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGAGCGCTCAGTCGGTCGGAGAGGT
321 TGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGAGTACGAGCACTCAGCCCATCGGAGAGGT
* * * * * * *
16214509 AGAATGTGCAAGCCGAGGATCGATCCGGTCCCCCCTGCGTGCTGTCTATCCTACTATCGTAACCT
386 AGAATGTGCAAGCCGAGGACCGACCCGGTCCCCCCTACGTGCTATCGATCCTACTACCGCAACCT
* * *
16214574 TCGGTTCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGC
451 TCGGTCCAGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGC
* * * ** * * *
16214639 GTTCGGGCACTGAGCCGATCGAAAAGGCGTAATGAGCAAGCTGAGGATCGGTCCGGTCCCCCTCT
516 GTGCGGGCACTCAGCCGATCGAAAAGGAGTAATGAGCAAGCCAAGGATCGGTCCGATCCCACTAT
* * * * *
16214704 ACGTGCTGCTAGTCCCGCTGCCACAACCCTCGGTCCAGCTAGGGCTTAGACATGGAATGAACTCC
581 ACGTGCTGCCAGTCCCGCTACCACAACCCTCAGCCCAGCTAGGGATTAGACATGGAATGAACTCC
* * * *
16214769 CTATGCCTAAGCCAACCCACAAAACGGGCGTGAGGGTGCTCAGCTGGCCGA
646 CTATGCCTAAGCCAACCCACAAAACGGGCGTGAGGGCGCTCAACCGACCGA
*
16214820 AGAGGCAGAATGCGCAAGCCAGGGAT-AGGCTCGATCCCCCCTGCGTGCTGTCGATCCTAG-TGT
1 AGAGGCAGAATGCGCAAGCCAGGGATCA-ACTCGATCCCCCCTGCGTGCTGTCGATCCT-GCTGT
*
16214883 CGCAACCCTCGGTCCGGTCTGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGGATGA
64 CGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGA
* *
16214948 ACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGTGTGCGCTCAGCCGAC-CGGAGAGGTCG
129 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGC------ACG--CAGCCG-CTC--A-A--TCG
* ** * * * * *
16215012 GTCGGAGAGGCAGAATGTGCAAGCTGGGGATCGGCTCGAT-CCCCCTTGCGTGCTGCCGATCCTG
180 GTCGGAGAGGCAGAATGTGCAAGCCGACGATCGACCCGATCCCCCCTTGCATGCTGCCAATCCTA
*
16215076 CTGCTGGTCCTGTTA-CTGCAA-CC-C-G-A-TCTGATCTTAGACTGGGAATGAACTCTGTATGC
245 CTGCTGGTCCTGCTATC-GCAACCCTCGGCAGTCTGATCTTAGACTGGGAATGAACTCTGTATGC
* * * *
16215135 TTAGACATGGAATGAATTCCGTATGCCTAAGCCATCCCATGAAACGAGAGTACGGGCACTCAGCC
309 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGAGTACGAGCACTCAGCC
* * * * * * *
16215200 CATCGGAGAGGTAGAATGTGTAAGCTGGGGACCGGCCCGGTCCCTCCTACGTGCTATCGGTCCTG
374 CATCGGAGAGGTAGAATGTGCAAGCCGAGGACCGACCCGGTCCCCCCTACGTGCTATCGATCCTA
16215265 CTACCGCAACCCTT-GGTCCAGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAAC
439 CTACCGCAA-CCTTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAAC
* ** * * * *
16215329 CCATGAAATGATG-GTGCGGGTGCTCAGTCGGTC-AGAGAGGTAG-AATGCGCAAGCCAAGGATC
503 CCACGAAATGA-GCGTGCGGGCACTCAGCCGATCGA-AAAGG-AGTAATGAGCAAGCCAAGGATC
* * * * * *
16215391 GG-CTCGATCCTACTATGCGTGCTGCCAGTCTCGTTACCACAACCCTCAGCCCAGTTGGGGATTA
565 GGTC-CGATCCCACTATACGTGCTGCCAGTCCCGCTACCACAACCCTCAGCCCAGCTAGGGATTA
** ** *
16215455 GACATGGAATGAACTCTTTATGCCTAAGCCAACCCATGAAATGGGCGT-ACGGGCGCTCAACCGA
629 GACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGA-GGGCGCTCAACCGA
* *
16215519 TCGG
693 CCGA
* * * ** * *
16215523 AGAGGCAGAATGCGCAAGCCGGGGATCAATTCGGTCCCCCCTGCGTGCTACCTATCCTGCTGTCA
1 AGAGGCAGAATGCGCAAGCCAGGGATCAACTCGATCCCCCCTGCGTGCTGTCGATCCTGCTGTCG
* * *
16215588 CAACCTTCGGTCCGGTCTGATCTTAGATTGGGAATGAACTCCGCATGCTTAGACTGGGGATGAAC
66 CAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAAC
* *
16215653 TCCGTATGCCTAAGTCAACCCACAAAACAAGCA
131 TCCGTATGCCTAAGTCAACCCACGAAACGAGCA
16215686 TGCGGACGCT
Statistics
Matches: 727, Mismatches: 112, Indels: 56
0.81 0.13 0.06
Matches are distributed among these distances:
697 1 0.00
698 110 0.15
699 27 0.04
700 2 0.00
702 4 0.01
703 483 0.66
704 10 0.01
706 6 0.01
707 2 0.00
708 2 0.00
709 4 0.01
710 39 0.05
711 37 0.05
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (696 bp):
AGAGGCAGAATGCGCAAGCCAGGGATCAACTCGATCCCCCCTGCGTGCTGTCGATCCTGCTGTCG
CAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAAC
TCCGTATGCCTAAGTCAACCCACGAAACGAGCACGCAGCCGCTCAATCGGTCGGAGAGGCAGAAT
GTGCAAGCCGACGATCGACCCGATCCCCCCTTGCATGCTGCCAATCCTACTGCTGGTCCTGCTAT
CGCAACCCTCGGCAGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAAC
TCCGTATGCCTAAGCCAACCCACGAAACGAGAGTACGAGCACTCAGCCCATCGGAGAGGTAGAAT
GTGCAAGCCGAGGACCGACCCGGTCCCCCCTACGTGCTATCGATCCTACTACCGCAACCTTCGGT
CCAGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCG
GGCACTCAGCCGATCGAAAAGGAGTAATGAGCAAGCCAAGGATCGGTCCGATCCCACTATACGTG
CTGCCAGTCCCGCTACCACAACCCTCAGCCCAGCTAGGGATTAGACATGGAATGAACTCCCTATG
CCTAAGCCAACCCACAAAACGGGCGTGAGGGCGCTCAACCGACCGA
Found at i:16215638 original size:26 final size:26
Alignment explanation
Indices: 16215609--16215661 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16215599 CCGGTCTGAT
*
16215609 CTTAGATTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
* *
16215635 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
16215661 C
1 C
16215662 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:16216255 original size:11 final size:11
Alignment explanation
Indices: 16216239--16216263 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
16216229 CGGTTAGAAT
16216239 CTCTGACGATG
1 CTCTGACGATG
16216250 CTCTGACGATG
1 CTCTGACGATG
16216261 CTC
1 CTC
16216264 CGATGATGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.32, G:0.24, T:0.28
Consensus pattern (11 bp):
CTCTGACGATG
Found at i:16216931 original size:26 final size:26
Alignment explanation
Indices: 16216893--16216945 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16216883 GCAGTCTGAT
*
16216893 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16216919 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
16216945 C
1 C
16216946 CCAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16217428 original size:26 final size:26
Alignment explanation
Indices: 16217392--16217442 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
16217382 CCAGTCCGAT
*
16217392 CTTAGATTGGGAATGAACTACGTATC
1 CTTAGACTGGGAATGAACTACGTATC
* *
16217418 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTACGTAT
16217443 GCCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATC
Found at i:16217598 original size:21 final size:21
Alignment explanation
Indices: 16217539--16217598 Score: 93
Period size: 21 Copynumber: 2.9 Consensus size: 21
16217529 TGGCTCGATC
* *
16217539 CCTGTTGCTGGTCCTACCGAT
1 CCTGCTGCTGGTCCTACTGAT
16217560 CCTGCTGCTGGTCCTACTGAT
1 CCTGCTGCTGGTCCTACTGAT
*
16217581 CTTGCTGCTGGTCCTACT
1 CCTGCTGCTGGTCCTACT
16217599 ACCGTAACCC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.08, C:0.33, G:0.23, T:0.35
Consensus pattern (21 bp):
CCTGCTGCTGGTCCTACTGAT
Found at i:16217910 original size:185 final size:185
Alignment explanation
Indices: 16217592--16218209 Score: 449
Period size: 185 Copynumber: 3.3 Consensus size: 185
16217582 TTGCTGCTGG
* * *
16217592 TCCTACTACCGTAACCCTCGATCTGATCCGATCTTAGATTGGGAATGAACTCCATATGCTTAGAC
1 TCCTACTACCGTAACCCTCGATCTGATCCGATATTAGACTGGGAATGAACTCCACATGCTTAGAC
** * * * *
16217657 ATGGAATGAACTCCGTATGCTTAAGCCAACCCATGAAATGAGCGTGTGGGCACTCAGTCGGCCGG
66 ATGGAATGAACAACGTATGCCTAAGCCAAACCATGAAATGAACGTGTGGGCACTCAGCCGGCCGG
* *
16217722 AGAGGCATAATGTGCAAGCCAGGGATCGGTCCGATCCACCCCTGCGTGCTGTCGA
131 AGAGGCAGAATGCGCAAGCCAGGGATCGGTCCGATCCACCCCTGCGTGCTGTCGA
* * * * * *
16217777 TCCTATTACCGTAACCCTCGAT-TCGATTCGATATTTGACTGGGAATGAACTTCGCATGCTTATA
1 TCCTACTACCGTAACCCTCGATCT-GATCCGATATTAGACTGGGAATGAACTCCACATGCTTAGA
* * * *** *
16217841 C-TGGGGATGAACAATGTATGCCTAAGTCAAACCATGAAATGAACGTGTGGGTGTTCAGCCGGTC
65 CAT-GGAATGAACAACGTATGCCTAAGCCAAACCATGAAATGAACGTGTGGGCACTCAGCCGGCC
* * *
16217905 GGAGAGGCAGAATGCGTAAGCCAGGGACTGACCCGGTCC-CTCCTACGTGCTACC-GATCTTGCT
129 GGAGAGGCAGAATGCGCAAGCCAGGGA-T----CGGTCCGATCC-AC---C--CCTG--CGTGCT
* *
16217968 GTTGG
181 GTCGA
** ** * * * * ** *
16217973 TCCTGTTGTCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGGC
1 TCCTACTACCGTAACCCTCGATCTGATCCGATATTAGACTGGGAATGAACTCCACATGCTTAGAC
** * * * * * * * *
16218038 ATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGTCGGTCAG
66 ATGGAATGAACAACGTATGCCTAAGCCAAACCATGAAATGAACGTGTGGGCACTCAGCCGGCCGG
* * * * * *
16218103 AGAGGCAGAAAGTGCAAGTCAGGGATCGG-CCTAGTCC-CCCCTACGTGCTATCGA
131 AGAGGCAGAATGCGCAAGCCAGGGATCGGTCCGA-TCCACCCCTGCGTGCTGTCGA
* * ** * * * * *
16218157 TCCTGCTGCCACAACCCTTGGT-TAGGTCCGATCTTAGAATGGGAATGAACTCC
1 TCCTACTACCGTAACCCTCGATCT-GATCCGATATTAGACTGGGAATGAACTCC
16218210 GTATGCCTAA
Statistics
Matches: 338, Mismatches: 74, Indels: 43
0.74 0.16 0.09
Matches are distributed among these distances:
183 1 0.00
184 53 0.16
185 128 0.38
186 1 0.00
187 1 0.00
189 3 0.01
190 11 0.03
191 3 0.01
192 3 0.01
193 1 0.00
194 1 0.00
195 3 0.01
196 127 0.38
197 2 0.01
ACGTcount: A:0.24, C:0.26, G:0.26, T:0.24
Consensus pattern (185 bp):
TCCTACTACCGTAACCCTCGATCTGATCCGATATTAGACTGGGAATGAACTCCACATGCTTAGAC
ATGGAATGAACAACGTATGCCTAAGCCAAACCATGAAATGAACGTGTGGGCACTCAGCCGGCCGG
AGAGGCAGAATGCGCAAGCCAGGGATCGGTCCGATCCACCCCTGCGTGCTGTCGA
Found at i:16218389 original size:159 final size:158
Alignment explanation
Indices: 16218030--16218401 Score: 401
Period size: 158 Copynumber: 2.3 Consensus size: 158
16218020 AACTCCGTAT
* *
16218030 GCTTAGGCATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAG
* * *
16218095 TCGGTCAGAGAGGCAGAAAGTGCAAGTCAGGGATCGGCCTAGTCCCCCCTACGTGCTATCGATCC
66 TCGCTCAGAGAGGCAGAAAGTGCAAGTCAGGGATCGACCCAGTCCCCCCTACGTGCTATCGATCC
** * * *
16218160 TGCTGCCACAACCCTTGGTTAGGTCCGA
131 CACTGCCACAACCCTCGATTAGCTCCGA
* ** * *
16218188 TCTTAGA-ATGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAACGAGCGTTCAGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCA
* * ** ** * * *
16218252 GTCGACT-GGAGAGGCATATTGCT-CAAGTGGGGGATTGACCCGGTCCCCCTCTGCGTGCTATCG
65 GTCG-CTCAGAGAGGCAGAAAG-TGCAAGTCAGGGATCGACCCAGTCCCCC-CTACGTGCTATCG
* * *
16218315 GTCCCACTGCCACAACCCTCGATCTAGCT-GGG
127 ATCCCACTGCCACAACCCTCGAT-TAGCTCCGA
* * *
16218347 GCTTAGACATGGAATGATCTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGC
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGC
16218402 GGGTGCTCAA
Statistics
Matches: 174, Mismatches: 34, Indels: 11
0.79 0.16 0.05
Matches are distributed among these distances:
157 2 0.01
158 88 0.51
159 78 0.45
160 6 0.03
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAG
TCGCTCAGAGAGGCAGAAAGTGCAAGTCAGGGATCGACCCAGTCCCCCCTACGTGCTATCGATCC
CACTGCCACAACCCTCGATTAGCTCCGA
Found at i:16218422 original size:159 final size:158
Alignment explanation
Indices: 16218030--16218429 Score: 419
Period size: 159 Copynumber: 2.5 Consensus size: 158
16218020 AACTCCGTAT
*
16218030 GCTTAGGCATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
** * * *
16218095 TCGGTCAGAGAGGCAGAAAGTGCAAGTCAGGGATCGGCCTAGTCCCCCCTACGTGCTATCGATCC
66 TCGACCGGAGAGGCAGAAAGTGCAAGTCAGGGATCGACCCAGTCCCCCCTACGTGCTATCGATCC
** * * *
16218160 TGCTGCCACAACCCTTGGTTAGGTCCGA
131 CACTGCCACAACCCTCGATTAGCTCCGA
* ** * * *
16218188 TCTTAGA-ATGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAACGAGCGTTCAGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* * ** ** * * * *
16218252 GTCGACTGGAGAGGCATATTGCT-CAAGTGGGGGATTGACCCGGTCCCCCTCTGCGTGCTATCGG
65 GTCGACCGGAGAGGCAGAAAG-TGCAAGTCAGGGATCGACCCAGTCCCCC-CTACGTGCTATCGA
* *
16218316 TCCCACTGCCACAACCCTCGATCTAGCT-GGG
128 TCCCACTGCCACAACCCTCGAT-TAGCTCCGA
* * * ** *
16218347 GCTTAGACATGGAATGATCTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
*
16218412 CCGACCGGAGAGGCAGAA
66 TCGACCGGAGAGGCAGAA
16218430 TACGCAGGCT
Statistics
Matches: 192, Mismatches: 45, Indels: 9
0.78 0.18 0.04
Matches are distributed among these distances:
157 2 0.01
158 88 0.46
159 96 0.50
160 6 0.03
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
TCGACCGGAGAGGCAGAAAGTGCAAGTCAGGGATCGACCCAGTCCCCCCTACGTGCTATCGATCC
CACTGCCACAACCCTCGATTAGCTCCGA
Found at i:16218535 original size:26 final size:26
Alignment explanation
Indices: 16218506--16218558 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16218496 CCGGTCTGAT
*
16218506 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16218532 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16218558 C
1 C
16218559 CTAGGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16219551 original size:143 final size:143
Alignment explanation
Indices: 16219275--16219544 Score: 305
Period size: 143 Copynumber: 1.9 Consensus size: 143
16219265 ATGAACTCCG
* ** * *
16219275 TATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCGGTCGGAGAGGCAGAATGCAC
1 TATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCACTCAGCCGGCCGGAGAGGCAAAATGCAC
* * * * * * * * *
16219340 AAGCTGCGGATTGGCTCGGTCCCCCTCTGCATGTTGCCGATCCTGTTGCCACAACCCTTGGTCCA
66 AAGCTGAGGATCGACCCGATCCCCCTCTGCATGCTACCAATCCTGCTGCCACAACCCTTGGTCCA
16219405 TCTGCCATAACCC
131 TCTGCCATAACCC
* *
16219418 TATGCCTAAGCCAACCCATGAAACAGA-CGTGCGGGCACTCAGCTGGCCTGG-GAGGCAAAATGC
1 TATGCCTAAGCCAACCCACGAAA-AGAGCGTGCGGGCACTCAGCCGGCC-GGAGAGGCAAAATGC
* * * *
16219481 ACAAG-TCGAGGATCGACCCGATCCCCC-CTGCGTGCTACCAATCCTGCTGTCGCAACCTTTGGT
64 ACAAGCT-GAGGATCGACCCGATCCCCCTCTGCATGCTACCAATCCTGCTGCCACAACCCTTGGT
16219544 C
128 C
16219545 TGATCTGATC
Statistics
Matches: 104, Mismatches: 20, Indels: 7
0.79 0.15 0.05
Matches are distributed among these distances:
142 30 0.29
143 70 0.67
144 4 0.04
ACGTcount: A:0.22, C:0.33, G:0.26, T:0.19
Consensus pattern (143 bp):
TATGCCTAAGCCAACCCACGAAAAGAGCGTGCGGGCACTCAGCCGGCCGGAGAGGCAAAATGCAC
AAGCTGAGGATCGACCCGATCCCCCTCTGCATGCTACCAATCCTGCTGCCACAACCCTTGGTCCA
TCTGCCATAACCC
Found at i:16219590 original size:26 final size:26
Alignment explanation
Indices: 16219554--16219603 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
16219544 CTGATCTGAT
16219554 CTTAGACTGGGAATGAACTTCGTATA
1 CTTAGACTGGGAATGAACTTCGTATA
*
16219580 CTTAGACTGGGGATGAACTTCGTA
1 CTTAGACTGGGAATGAACTTCGTA
16219604 CGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATA
Found at i:16220315 original size:26 final size:26
Alignment explanation
Indices: 16220277--16220329 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16220267 TGCTCAAACT
*
16220277 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
16220303 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
16220329 C
1 C
16220330 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16220505 original size:26 final size:26
Alignment explanation
Indices: 16220461--16220513 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16220451 CTGGTCTGAT
*
16220461 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
16220487 CTTAGACTAGGG-ATAAACTCCGTATG
1 CTTAGACT-GGGAATAAACTCCGTATG
16220513 C
1 C
16220514 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:16220590 original size:184 final size:182
Alignment explanation
Indices: 16220276--16220669 Score: 418
Period size: 184 Copynumber: 2.2 Consensus size: 182
16220266 GTGCTCAAAC
** *
16220276 TCTTAGACTGGGAATGAACTCTATATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATAAACTCCATATGCCTAAGCCAACC
** * * * *
16220341 CGTGAAACAAGTGTGCAGGAGCTCAGCTAGTCGAAAAGGTAGAATACGCAAGCCGAGGATCGGCC
66 CACGAAACAAGCGTGCAGGAGCTCAGCGAGTCGAAAAGGCAGAATACACAAGCCGAGGATCGGCC
* * * * ***
16220406 CAATCCCCCCTGCGAGCTATCGATCCTGCTA-TCGCAACCCTCGGTCTGGTCTGA
131 CAA--CCCCCTACGAGCTATCGATACTGCTAGT-ACAACCCTCGATCCAATCTGA
* * *
16220460 TCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TAGGGATAAACTCCGTATGCCTAAGTCAAC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATAAACTCCATATGCCTAAGCCAAC
* * * * * * * *
16220524 CCACGAAACGAGCGTGCGGGCGTTCAGCCGA-TCGAAGAA-GCAGAATGCATAAGCTGGGGATCG
65 CCACGAAACAAGCGTGCAGGAGCTCAG-CGAGTCGAA-AAGGCAGAATACACAAGCCGAGGATCG
* * * *
16220587 GCCCGACCCCCTACGTGCTGTCGATACTGCTAGTATAACCCTCGATCCAATCTGA
128 GCCCAACCCCCTACGAGCTATCGATACTGCTAGTACAACCCTCGATCCAATCTGA
*
16220642 TCTTAGATTGGGAATGAACTCCGTATGC
1 TCTTAGACTGGGAATGAACTCCGTATGC
16220670 CTAAGTCAAC
Statistics
Matches: 174, Mismatches: 32, Indels: 10
0.81 0.15 0.05
Matches are distributed among these distances:
182 64 0.37
183 2 0.01
184 104 0.60
185 4 0.02
ACGTcount: A:0.27, C:0.26, G:0.25, T:0.22
Consensus pattern (182 bp):
TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATAAACTCCATATGCCTAAGCCAACC
CACGAAACAAGCGTGCAGGAGCTCAGCGAGTCGAAAAGGCAGAATACACAAGCCGAGGATCGGCC
CAACCCCCTACGAGCTATCGATACTGCTAGTACAACCCTCGATCCAATCTGA
Found at i:16221001 original size:117 final size:117
Alignment explanation
Indices: 16220794--16221020 Score: 319
Period size: 117 Copynumber: 1.9 Consensus size: 117
16220784 CCCTCGGTCC
16220794 GATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCACACGGA
1 GATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCACACGGA
** * * * * *
16220859 TGCTTAGCCGATCGGAGAGGTAGAATGCACAAGCCGGGGATCGGCCCAGTCT
66 CACTCAACCGACCAGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCAGTCT
*** *
16220911 GATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGG
1 GATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCACACGGA
* * * *
16220976 CACTCAATCGGCCAGAGAGGCAGAATGCGCAAGCTGGGGATCGGC
66 CACTCAACCGACCAGAGAGGCAGAATGCACAAGCCGGGGATCGGC
16221021 TCGGTCCCTC
Statistics
Matches: 95, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
117 95 1.00
ACGTcount: A:0.27, C:0.26, G:0.31, T:0.16
Consensus pattern (117 bp):
GATTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCACACGGA
CACTCAACCGACCAGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCAGTCT
Found at i:16221633 original size:159 final size:157
Alignment explanation
Indices: 16221273--16221767 Score: 384
Period size: 159 Copynumber: 3.1 Consensus size: 157
16221263 AACTCTGTAT
* * * * ***
16221273 GCTTAGACATGGAATGAGCTCTGTACGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTTCTAAG
1 GCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGACACTAAG
** * * * * * *
16221338 CCGGTCGAAGAGGTAGAATGCGCAATCGAGGATTGGCTCGGTCCCCCCTGCGTGCTGTTGATCCT
66 CCGACCGAAGAGGCAGAATGCGCAACCGAGGATCGCCTCGGTCCCCCCTGCGTGCTATCGATCCT
* ***
16221403 GCTGTTGCAACCCTCGGTCCGGTCTGA
131 ACTGCCACAACCCTCGGTCCGGTCTGA
* * * * * * * *
16221430 TCTTAGACTGGGAATGAACTCCGTATGCCTATGTCGACCTACGAAATGAGCGTTCGGACACTGAG
1 GCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGACACTAAG
* * *
16221495 CCGACCGGAGAGGCATAATGCGCAAGCCGAGGATCGACCT-GGTCCCCCTCTGCGTGCTATCGGT
66 CCGACCGAAGAGGCAGAATGCGCAA-CCGAGGATCG-CCTCGGTCCCCC-CTGCGTGCTATCGAT
* *
16221559 CCTACTGCCACAACCCTCGGTCTGG-CTGGG
128 CCTACTGCCACAACCCTCGGTCCGGTCT-GA
* * * *** *
16221589 GCTTAGACTTGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAG
1 GCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGACACTAAG
* * * ** * * * * * *
16221654 CC-AGTCGAAGAAGCAAAATGCGCAAGTTGGGGATCGGCTCGATTCCCCCTTCGTGCTGTCGATC
66 CCGA-CCGAAGAGGCAGAATGCGCAA-CCGAGGATCGCCTCGGTCCCCCCTGCGTGCTATCGATC
* * ** * **
16221718 CTGCTGTCGTAACCCTCGGTCTGGTCCAA
129 CTACTGCCACAACCCTCGGTCCGGTCTGA
* *
16221747 TCTTAGACTGGGAATGAACTC
1 GCTTAGACTTGGAATGAACTC
16221768 TATATACTTA
Statistics
Matches: 263, Mismatches: 68, Indels: 13
0.76 0.20 0.04
Matches are distributed among these distances:
157 70 0.27
158 73 0.28
159 120 0.46
ACGTcount: A:0.21, C:0.29, G:0.28, T:0.22
Consensus pattern (157 bp):
GCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGACACTAAG
CCGACCGAAGAGGCAGAATGCGCAACCGAGGATCGCCTCGGTCCCCCCTGCGTGCTATCGATCCT
ACTGCCACAACCCTCGGTCCGGTCTGA
Found at i:16222998 original size:26 final size:26
Alignment explanation
Indices: 16222969--16223018 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
16222959 CAGGTCTGAT
16222969 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
16222995 CTTAGACTGGGGATGAACTCTGTA
1 CTTAGACTGGGAATGAACTCTGTA
16223019 CGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:16223285 original size:197 final size:197
Alignment explanation
Indices: 16222949--16223314 Score: 502
Period size: 197 Copynumber: 1.9 Consensus size: 197
16222939 CTACTGCCGC
** **
16222949 AACCCTCGGTCAGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACT
1 AACCCTCGGTCAGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGCAATGAACT
* *
16223014 CTGTACGCCTAAGTCAACCCACGAAACGAGAGTACGAGCGCTAAGTCAACTGGAGAGGCAGAATG
66 CTGTACGCCTAAGCCAACCCACGAAACGAGAGTACGAGCGCTAAGTCAACTAGAGAGGCAGAATG
* * * *
16223079 CGCAAGTCGGGGATCGATCTGGTCCCCCCCTGCGTGCTGCCGATCCTGCTGCTAGTCCTGCTATC
131 AGCAAGTCGGGGATCGACCCGATCCCCCCCTGCGTGCTGCCGATCCTGCTGCTAGTCCTGCTATC
16223144 GT
196 GT
* *
16223146 AACCCTCGGTCTGGTCTGATTTTAGACTGGGAATGAACTCCATATGCTTAGACAT-GCAATGAAC
1 AACCCTCGGTCAGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGAC-TGGCAATGAAC
* * ** * * *
16223210 T-TCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAGTCGACTAGAGAGGCAGAA
65 TCT-GTACGCCTAAGCCAACCCACGAAACGAGAGTACGAGCGCTAAGTCAACTAGAGAGGCAGAA
* * *
16223274 TGAGTAAGTCGGGGATCGGCCCGATCCCTCCCTGCGTGCTG
129 TGAGCAAGTCGGGGATCGACCCGATCCCCCCCTGCGTGCTG
16223315 TTGATCCTAC
Statistics
Matches: 145, Mismatches: 22, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
196 1 0.01
197 143 0.99
198 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.22
Consensus pattern (197 bp):
AACCCTCGGTCAGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGCAATGAACT
CTGTACGCCTAAGCCAACCCACGAAACGAGAGTACGAGCGCTAAGTCAACTAGAGAGGCAGAATG
AGCAAGTCGGGGATCGACCCGATCCCCCCCTGCGTGCTGCCGATCCTGCTGCTAGTCCTGCTATC
GT
Found at i:16223594 original size:159 final size:156
Alignment explanation
Indices: 16223191--16223653 Score: 378
Period size: 159 Copynumber: 2.9 Consensus size: 156
16223181 AACTCCATAT
* * * * * *
16223191 GCTTAGACATGCAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATG-CGGCACTCAG
* * * **
16223256 -TCGACTAGAGAGGCAGAATGAGTAAG-TCGGGGATCGGCCCGATCCCTCCCTGCGTGCTGTTGA
65 CT-G-CTGGAGAGGCAGAATGCGAAAGCT-GGGGATCGGCCCGAT-CCTCCCTGCGTGCTGCGGA
* * * * *
16223319 TCCTACTACCGCAACCCTTGATTCGGTCTGA
126 TCCCACTACCACAACCCTTCAGTCGGACTGA
* * ** * *
16223350 TCTTAGAC-TGTGAATGAACTCCATATGCCTAAGTCAACCCACGAAATAAGCATTCGAG-AGCTG
1 GCTTAGACATG-GAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCG-GCA-CTC
* * * *
16223413 AGCTGGCCGGAGAAGCATAATGCGAAAGCTGGGGATCGGCCCGATCCTCCTCTGCGTGCTGCGGG
63 AGCT-GCTGGAGAGGCAGAATGCGAAAGCTGGGGATCGGCCCGATCCTCC-CTGCGTGCTGCGGA
* * * *
16223478 TCCCGCTGCCACAACCC-TCAGTCTGACTAGG
126 TCCCACTACCACAACCCTTCAGTCGGACT-GA
* * *
16223509 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCAGGCACTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGC-GGCACTCAG
* * * * * * * *
16223574 CCTGCTGGTGAGGCAGAATGCGCAAGCCGGGGATCGACCTGATCCCCCCTACGTGCTGCCGATCC
65 -CTGCTGGAGAGGCAGAATGCGAAAGCTGGGGATCGGCCCGATCCTCCCTGCGTGCTGCGGATCC
** *
16223639 TGCTACCGCAACCCT
129 CACTACCACAACCCT
16223654 CGGTTCGATC
Statistics
Matches: 237, Mismatches: 55, Indels: 24
0.75 0.17 0.08
Matches are distributed among these distances:
158 40 0.17
159 188 0.79
160 9 0.04
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCGGCACTCAGC
TGCTGGAGAGGCAGAATGCGAAAGCTGGGGATCGGCCCGATCCTCCCTGCGTGCTGCGGATCCCA
CTACCACAACCCTTCAGTCGGACTGA
Found at i:16223697 original size:26 final size:26
Alignment explanation
Indices: 16223668--16223720 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16223658 TCGATCCGAT
16223668 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
16223694 CTTATACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16223720 C
1 C
16223721 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16225052 original size:197 final size:197
Alignment explanation
Indices: 16224701--16225065 Score: 450
Period size: 197 Copynumber: 1.9 Consensus size: 197
16224691 AATTCGGTTT
* * * ** *
16224701 GGTCTGATCTTAGACTAGAAATGAACTTCGTATGCTTAGACTGGGGATGAACTCTGTATGTCTAA
1 GGTCTGATCTTAGACTAGAAATGAACTTCATATGCTTAAACTGGGAATGAACTCCATATGCCTAA
* * * *
16224766 GTCAACCCATGAAACGAGCGTACAGGCGCTTAACCGGCTGGAGAGGTAGAATGTGCAAGCCGGGG
66 GCCAACCCACGAAACGAGCGTACAGGCGCTCAACCGGCTGGAAAGGTAGAATGTGCAAGCCGGGG
* * *
16224831 ATCGGTCTATTCCGCCCTTACGTGCTGCCGATCCTGCTATTGGTCCTACTGTCGCAACCCTCGGT
131 ACCGGCCTAGTCCGCCCTTACGTGCTGCCGATCCTGCTATTGGTCCTACTGTCGCAACCCTCGGT
16224896 CC
196 CC
* *
16224898 GGTCTGATCTTAGACTGGGAATGAAC-TCTATATGCTTAAACAT-GGAATGAACTCCATATGCCT
1 GGTCTGATCTTAGACTAGAAATGAACTTC-ATATGCTTAAAC-TGGGAATGAACTCCATATGCCT
* *** * *
16224961 AAGCCAACCCACGAAACGAGTGTGTGGGTGCTCAACCGG-TCGGAAAGGTAGAATGTGCAAGTCG
64 AAGCCAACCCACGAAACGAGCGTACAGGCGCTCAACCGGCT-GGAAAGGTAGAATGTGCAAGCCG
* **
16225025 GGGACCGGCCTGGTCC-CCCTCTACGTGCTGTTGATCCTGCT
128 GGGACCGGCCTAGTCCGCCCT-TACGTGCTGCCGATCCTGCT
16225066 GCCGCAACCT
Statistics
Matches: 140, Mismatches: 24, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
196 7 0.05
197 132 0.94
198 1 0.01
ACGTcount: A:0.23, C:0.25, G:0.27, T:0.25
Consensus pattern (197 bp):
GGTCTGATCTTAGACTAGAAATGAACTTCATATGCTTAAACTGGGAATGAACTCCATATGCCTAA
GCCAACCCACGAAACGAGCGTACAGGCGCTCAACCGGCTGGAAAGGTAGAATGTGCAAGCCGGGG
ACCGGCCTAGTCCGCCCTTACGTGCTGCCGATCCTGCTATTGGTCCTACTGTCGCAACCCTCGGT
CC
Found at i:16225437 original size:26 final size:26
Alignment explanation
Indices: 16225408--16225460 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16225398 CCGGTTTGAT
16225408 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
16225434 CTTAGACTGGGGATGTACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16225460 C
1 C
16225461 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16226208 original size:26 final size:26
Alignment explanation
Indices: 16226170--16226222 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16226160 CCGGTCTGAT
** *
16226170 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACAAGGAATGAACTCCGTATG
16226196 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
16226222 C
1 C
16226223 GTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATG
Found at i:16226706 original size:26 final size:26
Alignment explanation
Indices: 16226670--16226722 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16226660 CCGGTCTGAT
16226670 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
16226696 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16226722 C
1 C
16226723 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16227431 original size:26 final size:26
Alignment explanation
Indices: 16227393--16227445 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16227383 GGCTCAAACT
*
16227393 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
16227419 CTTAGACAT-GGAATGAACACCGTATG
1 CTTAGAC-TGGGAATGAACACCGTATG
16227445 C
1 C
16227446 CCAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGTATG
Found at i:16227766 original size:26 final size:26
Alignment explanation
Indices: 16227736--16227788 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16227726 CCGTTTTGAT
16227736 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
*
16227762 CTTAGACTAGGGATGAACTCTGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
16227788 C
1 C
16227789 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:16230404 original size:24 final size:24
Alignment explanation
Indices: 16230368--16230429 Score: 97
Period size: 24 Copynumber: 2.6 Consensus size: 24
16230358 ACAAGCGGGA
* * *
16230368 TGGTCAGTAGACCATGAGCTGCAT
1 TGGTCAGTGGACCATAAGCTACAT
16230392 TGGTCAGTGGACCATAAGCTACAT
1 TGGTCAGTGGACCATAAGCTACAT
16230416 TGGTCAGTGGACCA
1 TGGTCAGTGGACCA
16230430 CGAGTTCTCG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (24 bp):
TGGTCAGTGGACCATAAGCTACAT
Found at i:16239822 original size:26 final size:26
Alignment explanation
Indices: 16239778--16239830 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16239768 CCAATTCGAT
16239778 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
16239804 CTTAGACTGGGGATTAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16239830 C
1 C
16239831 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16240120 original size:15 final size:15
Alignment explanation
Indices: 16240100--16240130 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
16240090 ACATGGAATG
16240100 AACTCCGTATGCCTA
1 AACTCCGTATGCCTA
16240115 AACTCCGTATGCCTA
1 AACTCCGTATGCCTA
16240130 A
1 A
16240131 GCCAACCCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.29, C:0.32, G:0.13, T:0.26
Consensus pattern (15 bp):
AACTCCGTATGCCTA
Found at i:16240611 original size:26 final size:26
Alignment explanation
Indices: 16240575--16240627 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16240565 CTGGTTCGAT
16240575 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
16240601 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
16240627 C
1 C
16240628 CTAAGTCATC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:16241211 original size:158 final size:159
Alignment explanation
Indices: 16240923--16241234 Score: 378
Period size: 158 Copynumber: 2.0 Consensus size: 159
16240913 CTGCTGCTGG
* * * * * *
16240923 TCCTACTGCCGTAACCCTCGACCTGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGC
1 TCCTACCGCCGTAACCCTCGACCTGATCCAATCCTAGACTGGGAATGAACTCCGCATGCCTAAGC
* * * * *
16240988 CAACCAACGAAACGAATGTGCGGGCGCTCAGCCGGCTGGAGAGGCAAAATGGCCAAGTCAAGGAT
66 CAACCAACGAAACGAACGTACGGGCGCTCAGCCGACTGAAGAGGCAAAATGGCCAAGCCAAGGAT
16241053 CGACCCGATCCCCC-CTACATGCTGTCGA
131 CGACCCGATCCCCCTCTACATGCTGTCGA
*
16241081 TCCTACCGTCGTAACCCTCGATCC-GATCCAATCCTAGACTGGGAATGAACTCCGCATGCCTAAG
1 TCCTACCGCCGTAACCCTCGA-CCTGATCCAATCCTAGACTGGGAATGAACTCCGCATGCCTAAG
* * * * * * * * **
16241145 TCAACCCATGAAACGAGCGTACGGGCGTTGAGCCGATTGAAGAGGCATAATGAG-CAAGCCGGGG
65 CCAACCAACGAAACGAACGTACGGGCGCTCAGCCGACTGAAGAGGCAAAATG-GCCAAGCCAAGG
*
16241209 ATCGACCCGATCCCCCTCTACGTGCT
129 ATCGACCCGATCCCCCTCTACATGCT
16241235 ACCAATCCCG
Statistics
Matches: 128, Mismatches: 23, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
158 117 0.91
159 11 0.09
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.19
Consensus pattern (159 bp):
TCCTACCGCCGTAACCCTCGACCTGATCCAATCCTAGACTGGGAATGAACTCCGCATGCCTAAGC
CAACCAACGAAACGAACGTACGGGCGCTCAGCCGACTGAAGAGGCAAAATGGCCAAGCCAAGGAT
CGACCCGATCCCCCTCTACATGCTGTCGA
Found at i:16241484 original size:26 final size:26
Alignment explanation
Indices: 16241432--16241485 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
16241422 GTCTGATCTT
*
16241432 AGACTGGGAATGAACTCCGTATGCTA
1 AGACTGGGAATGAACTCCGTAAGCTA
*
16241458 AGACTGGGGATGAA-TCCGTAAGCCTA
1 AGACTGGGAATGAACTCCGTAAG-CTA
16241484 AG
1 AG
16241486 TCAACCCACG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.31, C:0.19, G:0.30, T:0.20
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTAAGCTA
Found at i:16241848 original size:26 final size:26
Alignment explanation
Indices: 16241819--16241871 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16241809 CCGGTCAAAT
*
16241819 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCATATG
16241845 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCATATG
16241871 C
1 C
16241872 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:16242384 original size:26 final size:26
Alignment explanation
Indices: 16242346--16242398 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16242336 CCGATCCGAT
16242346 CTTAGACTGGGAATAAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
* *
16242372 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATAAACTCCATATG
16242398 C
1 C
16242399 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:16243270 original size:26 final size:26
Alignment explanation
Indices: 16243232--16243284 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16243222 ATGATTCGAT
*
16243232 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16243258 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
16243284 C
1 C
16243285 CTAAGACAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16248452 original size:26 final size:26
Alignment explanation
Indices: 16248416--16248468 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16248406 TTGGTTCGAT
*
16248416 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACACCGCATG
* *
16248442 CTTAGACTGGGGATGAACACCGTATG
1 CTTAGACTGGGAATGAACACCGCATG
16248468 C
1 C
16248469 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGCATG
Found at i:16249178 original size:26 final size:26
Alignment explanation
Indices: 16249139--16249191 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16249129 GGCTCAAAAT
*
16249139 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACACCGTATG
16249165 CTTAGACATG-GAATGAACACCGTATG
1 CTTAGAC-TGAGAATGAACACCGTATG
16249191 C
1 C
16249192 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACACCGTATG
Found at i:16249519 original size:159 final size:158
Alignment explanation
Indices: 16249164--16249631 Score: 532
Period size: 158 Copynumber: 3.0 Consensus size: 158
16249154 AACTCCGTAT
* * *
16249164 GCTTAGACATGGAATGAACACCGTATGCCTAAGCCAACCCATGAAATGAGTGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAG
* * * * * *
16249229 CCGACCGGAGCGGCAAAATGCACAAGCCGGGGATCGGCCTGGTCCCCCCTGTGTGCTGTCGATCC
66 CCGGCCGGAGAGGCAAAATGCACAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGCCGATCC
* *
16249294 TGCTGCCACAACCCTCGGTCCGATCTGA
131 TGCTGCCACAACCCTCAGTCCGAGCTGA
* * * * ** *
16249322 TCTTAGAC-TGAGAATGAACTCCGTAAGCATAAGTCAACCCATGAAACGAGCGTGTGGGCGCTGA
1 GCTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCA
* * * * *
16249386 GCTGGCCGAAAAGGCATAATGCACAAGCCGGGGATCGACCCGATCCCCCTCTGCGTGCTGCC-AG
65 GCCGGCCGGAGAGGCAAAATGCACAAGCCGGGGATCGACCCGGTCCCCC-CTGCGTGCTGCCGA-
* *
16249450 TCCCGCTGCCACAACCCTCAGTCCG-GCTGGG
128 TCCTGCTGCCACAACCCTCAGTCCGAGCT-GA
* * * *
16249481 GCTTAGACATGGAAAGAACTCCCTATGCCTAAGCCAACCCATGAAACCG-GCGTCCAAGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA-CGAGCGTGCAGGCGCTCA
** *
16249545 GCCGGCCGGAGAGG-AAGAATGCGTAAGCCGGGGATCGACTCGGTCCCCCCTGCGTGCTGCCGAT
65 GCCGGCCGGAGAGGCAA-AATGCACAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGCCGAT
* **
16249609 CTTGCTGCTGCAACCCTCAGTCC
129 CCTGCTGCCACAACCCTCAGTCC
16249632 CATCCAATCT
Statistics
Matches: 254, Mismatches: 48, Indels: 16
0.80 0.15 0.05
Matches are distributed among these distances:
157 2 0.01
158 127 0.50
159 121 0.48
160 4 0.02
ACGTcount: A:0.23, C:0.32, G:0.28, T:0.17
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAG
CCGGCCGGAGAGGCAAAATGCACAAGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTGCCGATCC
TGCTGCCACAACCCTCAGTCCGAGCTGA
Found at i:16249669 original size:26 final size:26
Alignment explanation
Indices: 16249640--16249692 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16249630 CCCATCCAAT
16249640 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGGATGAACTCCATATG
16249666 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGGATGAACTCCATATG
16249692 C
1 C
16249693 CTAACTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCATATG
Found at i:16250616 original size:159 final size:158
Alignment explanation
Indices: 16250145--16250621 Score: 452
Period size: 156 Copynumber: 3.0 Consensus size: 158
16250135 CCAACTGCCA
* * *
16250145 CAACCCTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAA
1 CAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
* * * * * *
16250210 ATGAGAGTGCGGGCGCTTAGCCGGTCGGAGAGGCAGAATGTGCAA-TCGGGGAT-AGGCTTGGTC
66 ACGAGAGTGCGGGCGCTCAGCC-GCCGGAGAGGCAAAATGCGCAAGTCGGGGATCA-GCCTGGTC
* *
16250273 CCCC-TGCGTGCTGTCGATCCTGCT-ACTG
129 CCCCTTGCGTGCTGTCGATCCTGCTGTCAG
* * * * ** * * * *
16250301 CAACCCTTGGTCCGGTTCGATCTTAGAC-TGGGAATGAACTTCGTATGCCTAGGTCAACCCACAA
1 CAACCCTCGATCCGGCTGGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGA
* * * *
16250365 AACGAGAGTGCGGGCGCTGAGCCGACTGAAGAGG-AATAATGC-CAAGCCGGGGATCAGCCTGGT
65 AACGAGAGTGCGGGCGCTCAGCCG-CCGGAGAGGCAA-AATGCGCAAGTCGGGGATCAGCCTGGT
* * *
16250428 CCCCCTCTGTGTGCTG-CAAGTCCCGCTGTCAG
128 CCCCCT-TGCGTGCTGTCGA-TCCTGCTGTCAG
* *
16250460 -AACCCATCGATCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGA
1 CAACCC-TCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGA
* * * * * **
16250524 AACGGGCGTGCAGGCACTCAGCCTGCCGGAGAGGCAAAATGCGCAAGTCGAGGATCAGCCCAGTC
65 AACGAGAGTGCGGGCGCTCAGCC-GCCGGAGAGGCAAAATGCGCAAGTCGGGGATCAGCCTGGTC
* *
16250589 CCCCTTGCGTGCTGTTGATCCTACTGTC-G
129 CCCCTTGCGTGCTGTCGATCCTGCTGTCAG
16250618 CAAC
1 CAAC
16250622 ACTCAGTCCG
Statistics
Matches: 252, Mismatches: 53, Indels: 29
0.75 0.16 0.09
Matches are distributed among these distances:
155 6 0.02
156 100 0.40
157 3 0.01
158 20 0.08
159 95 0.38
160 28 0.11
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.19
Consensus pattern (158 bp):
CAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
ACGAGAGTGCGGGCGCTCAGCCGCCGGAGAGGCAAAATGCGCAAGTCGGGGATCAGCCTGGTCCC
CCTTGCGTGCTGTCGATCCTGCTGTCAG
Found at i:16257696 original size:26 final size:26
Alignment explanation
Indices: 16257658--16257710 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16257648 GGCTCAAAAT
*
16257658 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAAAGAACTCCGTATG
16257684 CTTAGAC-ATGGAAAGAACTCCGTATG
1 CTTAGACTA-GGAAAGAACTCCGTATG
16257710 C
1 C
16257711 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAAAGAACTCCGTATG
Found at i:16258074 original size:158 final size:158
Alignment explanation
Indices: 16257683--16258184 Score: 539
Period size: 159 Copynumber: 3.2 Consensus size: 158
16257673 AACTCCGTAT
* * *
16257683 GCTTAGACATGGAAAGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * * *
16257748 CCGACCGGAAAGGTAGAATGCGCAAGCC-AGGAACCAGCTTGGTCCCCCTTTGTGTGCTATCGAT
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGA-CTCGATCCCCCTCTATGTGCTGTCGAT
** * * *
16257812 CCTGCTGCGGCAACCCTCAGTTCGGTCTGG
130 CCTGCTGCCACAACCCTC-GGTCCGACTGG
* * * * * * *
16257842 TCTTAGACTTGGAATGAACTCCGTATGCCTAAG-TCAACCCACGAAACAAGCGTTCGAGTGCTGA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCT-AACCCACGAAACGAGCGTGCGGGCGCTCA
* * *
16257906 GCCGACCGGAGAGGCATAATGCGCAAGCCGAGGATCGACTCGATCCCCCTCTACGTGCTGTCGGT
65 GCCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACTCGATCCCCCTCTATGTGCTGTCGAT
16257971 CCTGCTGCCACAACCCTCGGTCCGACTGG
130 CCTGCTGCCACAACCCTCGGTCCGACTGG
* * * *
16258000 GCTTAAACATGGAATGAACTCCCTATGCCTAAGCTAACCCACGAAACGGGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCGCTCAG
** * * * *
16258065 CCGGTCGGAGAGGCAGAATGCACAATCCGAGAATCGGCTC-AGT-CCCC-CTATGTGCTGTCGAT
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACTCGA-TCCCCCTCTATGTGCTGTCGAT
* *
16258127 CCTGCTGCCCCAACCCTCGGTCCGATCTGA
130 CCTGCTGCCACAACCCTCGGTCCGA-CTGG
* *
16258157 TCTTAGAC-TAGGAATGAACTCCATATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
16258185 TTAGACTGGG
Statistics
Matches: 285, Mismatches: 52, Indels: 14
0.81 0.15 0.04
Matches are distributed among these distances:
156 38 0.13
157 31 0.11
158 94 0.33
159 116 0.41
160 6 0.02
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACTCGATCCCCCTCTATGTGCTGTCGATC
CTGCTGCCACAACCCTCGGTCCGACTGG
Found at i:16258199 original size:26 final size:26
Alignment explanation
Indices: 16258158--16258210 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16258148 CCGATCTGAT
16258158 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
16258184 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
16258210 C
1 C
16258211 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:16258386 original size:184 final size:182
Alignment explanation
Indices: 16258000--16258502 Score: 567
Period size: 184 Copynumber: 2.7 Consensus size: 182
16257990 GTCCGACTGG
* * * * * *
16258000 GCTTAAACATGGAATGAACTCCCTATGCCTAAGCTAACCCACGAAACGGGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGC-AACCCACGAAATGAGCGTGTGGGCGCTCAG
* * * * * ** *
16258065 CCGGTCGGAGAGGCAGAATGCACAATCCGAGAATCGGCTCAGTCCCCCTATGTGCTGTCGATCCT
65 CCGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCCTGCGTGCTATCGATCCT
* * ** *
16258130 GCTGCCCCAACCCTCGGTCCGATCTGATCTTAGACTAGGAATGAACTCCATAT
130 GCTACCCCAACCCTCAGTCCGATCCAATCTTAGACTAGGAATGAACTCCATAC
* *
16258183 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCTACGAAATGAGCGTGTGGGCGCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAG-CAACCCACGAAATGAGCGTGTGGGCGCTCA
** * *
16258247 ATCGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTTCCCCCTGCGTGCTATTGGTC
64 GCCGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGG-TCCCCCTGCGTGCTATCGATC
* * * * *
16258312 CTGCTATCGCAACCTTCAGTCCGATCCAATCTTGGACTGGGAATGAACTCCATAC
128 CTGCTACCCCAACCCTCAGTCCGATCCAATCTTAGACTAGGAATGAACTCCATAC
* * *
16258367 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCATGTGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAG-CAACCCACGAAATGAGCGTGTGGGCGCTCAG
* * ** * * * *
16258432 CCGGCCGGAGAGGCAGAATGCGCAAGTTGGAGACCAGCCCGGTCCCCTCTGCGTGCTGTCGATCC
65 CCGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCC-CTGCGTGCTATCGATCC
*
16258497 TACTAC
129 TGCTAC
16258503 TTAGACTGGG
Statistics
Matches: 265, Mismatches: 50, Indels: 9
0.82 0.15 0.03
Matches are distributed among these distances:
182 1 0.00
183 93 0.35
184 170 0.64
185 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (182 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCAACCCACGAAATGAGCGTGTGGGCGCTCAGC
CGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCCTGCGTGCTATCGATCCTG
CTACCCCAACCCTCAGTCCGATCCAATCTTAGACTAGGAATGAACTCCATAC
Found at i:16258869 original size:26 final size:26
Alignment explanation
Indices: 16258820--16258873 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
16258810 GATCCGATCT
***
16258820 TAGACTGGGAATGAACTTTGTATGCC
1 TAGACTGGGAATGAACTCCATATGCC
*
16258846 TAGACTGGGGATGAACTCCATATGCC
1 TAGACTGGGAATGAACTCCATATGCC
16258872 TA
1 TA
16258874 AGTCAACCCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCC
Found at i:16259576 original size:26 final size:26
Alignment explanation
Indices: 16259538--16259590 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16259528 GGCTCAAAAT
*
16259538 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAAAGAACTCCGTATG
16259564 CTTAGAC-ATGGAAAGAACTCCGTATG
1 CTTAGACTA-GGAAAGAACTCCGTATG
16259590 C
1 C
16259591 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAAAGAACTCCGTATG
Found at i:16259954 original size:158 final size:158
Alignment explanation
Indices: 16259563--16260064 Score: 539
Period size: 159 Copynumber: 3.2 Consensus size: 158
16259553 AACTCCGTAT
* * *
16259563 GCTTAGACATGGAAAGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * * *
16259628 CCGACCGGAAAGGTAGAATGCGCAAGCC-AGGAACCAGCTTGGTCCCCCTTTGTGTGCTATCGAT
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGA-CTCGATCCCCCTCTATGTGCTGTCGAT
** * * *
16259692 CCTGCTGCGGCAACCCTCAGTTCGGTCTGG
130 CCTGCTGCCACAACCCTC-GGTCCGACTGG
* * * * * * *
16259722 TCTTAGACTTGGAATGAACTCCGTATGCCTAAG-TCAACCCACGAAACAAGCGTTCGAGTGCTGA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCT-AACCCACGAAACGAGCGTGCGGGCGCTCA
* * *
16259786 GCCGACCGGAGAGGCATAATGCGCAAGCCGAGGATCGACTCGATCCCCCTCTACGTGCTGTCGGT
65 GCCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACTCGATCCCCCTCTATGTGCTGTCGAT
16259851 CCTGCTGCCACAACCCTCGGTCCGACTGG
130 CCTGCTGCCACAACCCTCGGTCCGACTGG
* * * *
16259880 GCTTAAACATGGAATGAACTCCCTATGCCTAAGCTAACCCACGAAACGGGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCGCTCAG
** * * * *
16259945 CCGGTCGGAGAGGCAGAATGCACAATCCGAGAATCGGCTC-AGT-CCCC-CTATGTGCTGTCGAT
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACTCGA-TCCCCCTCTATGTGCTGTCGAT
* *
16260007 CCTGCTGCCCCAACCCTCGGTCCGATCTGA
130 CCTGCTGCCACAACCCTCGGTCCGA-CTGG
* *
16260037 TCTTAGAC-TAGGAATGAACTCCATATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
16260065 TTAGACTGGG
Statistics
Matches: 285, Mismatches: 52, Indels: 14
0.81 0.15 0.04
Matches are distributed among these distances:
156 38 0.13
157 31 0.11
158 94 0.33
159 116 0.41
160 6 0.02
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACTCGATCCCCCTCTATGTGCTGTCGATC
CTGCTGCCACAACCCTCGGTCCGACTGG
Found at i:16260079 original size:26 final size:26
Alignment explanation
Indices: 16260038--16260090 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16260028 CCGATCTGAT
16260038 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
16260064 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
16260090 C
1 C
16260091 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:16260266 original size:184 final size:182
Alignment explanation
Indices: 16259880--16260382 Score: 567
Period size: 184 Copynumber: 2.7 Consensus size: 182
16259870 GTCCGACTGG
* * * * * *
16259880 GCTTAAACATGGAATGAACTCCCTATGCCTAAGCTAACCCACGAAACGGGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGC-AACCCACGAAATGAGCGTGTGGGCGCTCAG
* * * * * ** *
16259945 CCGGTCGGAGAGGCAGAATGCACAATCCGAGAATCGGCTCAGTCCCCCTATGTGCTGTCGATCCT
65 CCGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCCTGCGTGCTATCGATCCT
* * ** *
16260010 GCTGCCCCAACCCTCGGTCCGATCTGATCTTAGACTAGGAATGAACTCCATAT
130 GCTACCCCAACCCTCAGTCCGATCCAATCTTAGACTAGGAATGAACTCCATAC
* *
16260063 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCTACGAAATGAGCGTGTGGGCGCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAG-CAACCCACGAAATGAGCGTGTGGGCGCTCA
** * *
16260127 ATCGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTTCCCCCTGCGTGCTATTGGTC
64 GCCGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGG-TCCCCCTGCGTGCTATCGATC
* * * * *
16260192 CTGCTATCGCAACCTTCAGTCCGATCCAATCTTGGACTGGGAATGAACTCCATAC
128 CTGCTACCCCAACCCTCAGTCCGATCCAATCTTAGACTAGGAATGAACTCCATAC
* * *
16260247 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCATGTGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAG-CAACCCACGAAATGAGCGTGTGGGCGCTCAG
* * ** * * * *
16260312 CCGGCCGGAGAGGCAGAATGCGCAAGTTGGAGACCAGCCCGGTCCCCTCTGCGTGCTGTCGATCC
65 CCGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCC-CTGCGTGCTATCGATCC
*
16260377 TACTAC
129 TGCTAC
16260383 TTAGACTGGG
Statistics
Matches: 265, Mismatches: 50, Indels: 9
0.82 0.15 0.03
Matches are distributed among these distances:
182 1 0.00
183 93 0.35
184 170 0.64
185 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (182 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCAACCCACGAAATGAGCGTGTGGGCGCTCAGC
CGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCCCGGTCCCCCTGCGTGCTATCGATCCTG
CTACCCCAACCCTCAGTCCGATCCAATCTTAGACTAGGAATGAACTCCATAC
Found at i:16260749 original size:26 final size:26
Alignment explanation
Indices: 16260698--16260750 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16260688 CTGATCCGAT
***
16260698 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16260724 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
16260750 C
1 C
16260751 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16261796 original size:26 final size:26
Alignment explanation
Indices: 16261760--16261812 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16261750 CCGATCTAAT
16261760 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
* *
16261786 CTTATACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
16261812 C
1 C
16261813 CTAAGTAAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:16262005 original size:26 final size:26
Alignment explanation
Indices: 16261969--16262021 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16261959 TCAATCCGAT
16261969 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
16261995 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
16262021 C
1 C
16262022 CTAGGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:16262698 original size:26 final size:26
Alignment explanation
Indices: 16262660--16262710 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16262650 GGCTCAAAAT
*
16262660 CTTAGACTGGGAATGAACTCGGTATC
1 CTTAGACTGGGAATGAACTCCGTATC
16262686 CTTAGACAT-GGAATGAACTCCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
16262711 GCCTAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATC
Found at i:16263376 original size:26 final size:26
Alignment explanation
Indices: 16263325--16263377 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16263315 CTGGTTCGAT
*
16263325 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16263351 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16263377 C
1 C
16263378 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16264293 original size:26 final size:26
Alignment explanation
Indices: 16264255--16264305 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16264245 GGCTCAAAAT
*
16264255 CTTAGACTGGGAATGAACTCGGTATC
1 CTTAGACTGGGAATGAACTCCGTATC
16264281 CTTAGACAT-GGAATGAACTCCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
16264306 GCCTAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATC
Found at i:16264847 original size:26 final size:26
Alignment explanation
Indices: 16264806--16264858 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16264796 CCGATCTGAT
*
16264806 CTTAGACCGGGAATGAACTTCGTATG
1 CTTAGACCGGGAATGAACTCCGTATG
* *
16264832 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACCGGGAATGAACTCCGTATG
16264858 C
1 C
16264859 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACCGGGAATGAACTCCGTATG
Found at i:16265565 original size:26 final size:26
Alignment explanation
Indices: 16265527--16265577 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16265517 GGCTTAAAAT
16265527 CTTAGACTGGGAATGAACTCAGTATC
1 CTTAGACTGGGAATGAACTCAGTATC
*
16265553 CTTAGACAT-GGAATGAACTCTGTAT
1 CTTAGAC-TGGGAATGAACTCAGTAT
16265578 GCCTAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATC
Found at i:16265895 original size:158 final size:158
Alignment explanation
Indices: 16265553--16265895 Score: 406
Period size: 158 Copynumber: 2.2 Consensus size: 158
16265543 ACTCAGTATC
* * *
16265553 CTTAGACATGGAATGAAC-TCTGTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCGCTTAG
1 CTTAGACATGGAATGAACTTCT-TATGCCTAAGCCAACCCACAAAACGAGCGTACAGGCGCTCAA
* * * * *
16265617 CCGGCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCTCGATCCCACTCTGCATGCTACCGGTCC
65 CCGGCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCACCCTGCATGCTACCGATCA
* *
16265682 CGTTGCCACAACCCTCGGTCCAGCTTGGG
130 CGTTGCCACAACCCTCAGTCCAGCTTGAG
* * * *
16265711 CTTAGACATGGAATGAA-TTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAA
1 CTTAGACATGGAATGAACTT-CTTATGCCTAAGCCAACCCACAAAACGAGCGTACAGGCGCTCAA
* * **
16265775 CCGGCTGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGGTCCC-CCCTGCATGCTGTCGATC
65 CCGGC-GGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCACCCTGCATGCTACCGATC
* * * * * *
16265839 ATGTTGTCGCAACCCTCAGTCCGGTTTGAT
129 ACGTTGCCACAACCCTCAGTCCAGCTTGAG
16265869 CTTAGAC-TGGGAATGAACTTCTTATGC
1 CTTAGACAT-GGAATGAACTTCTTATGC
16265896 TGATACTGGG
Statistics
Matches: 155, Mismatches: 25, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
157 1 0.01
158 115 0.74
159 39 0.25
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTTCTTATGCCTAAGCCAACCCACAAAACGAGCGTACAGGCGCTCAAC
CGGCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCACCCTGCATGCTACCGATCAC
GTTGCCACAACCCTCAGTCCAGCTTGAG
Found at i:16266089 original size:26 final size:26
Alignment explanation
Indices: 16266053--16266105 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16266043 CTGGTCCGAT
*
16266053 CTTAGAATGGGAATGAACTTTGTATG
1 CTTAGAATGGGAATGAACTCTGTATG
* *
16266079 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGAATGGGAATGAACTCTGTATG
16266105 C
1 C
16266106 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCTGTATG
Found at i:16266157 original size:184 final size:183
Alignment explanation
Indices: 16265733--16266163 Score: 531
Period size: 184 Copynumber: 2.3 Consensus size: 183
16265723 ATGAATTCCC
* * * * * * * **
16265733 TATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAACCGGCTGGAGAGGCAGAATGCGT
1 TATGCCTAAGTCAACCCACGAAATGAGCGTGC-GGCGCTCAATCGACCGGAGAGGCAGAATGCAC
* * * *
16265798 AAGCCGGGGATCGGCCCGGTCCCCCCTGCATGCTGTCGATCATGTTGTCGCAACCCTCAGTCCGG
65 AAACCGGGGATCAGCCCGGTCCCCCCTGCATGCTGCCGATCATGCTGTCGCAACCCTCAGTCCGG
** * *
16265863 TTTGATCTTAGACTGGGAATGAACTTCTTATGCTGATACTGGGGATGAACTCTG
130 TCCGATCTTAGAATGGGAATGAACTTCTTATGCTGAGACTGGGGATGAACTCTG
* * * *
16265917 TATGCCTAAGTCAACCCATGAAATGAGCGTGTAGGTGCTCAATCGATCGGAGAGGCAGAATGCAC
1 TATGCCTAAGTCAACCCACGAAATGAGCGTG-CGGCGCTCAATCGACCGGAGAGGCAGAATGCAC
* * * ** *
16265982 AAACCGGGGATCAGCTCGGTCCCCCCTGCGTGCTGCCGATCTTGCTGTCGCAACCCTTTGTCTGG
65 AAACCGGGGATCAGCCCGGTCCCCCCTGCATGCTGCCGATCATGCTGTCGCAACCCTCAGTCCGG
*
16266047 TCCGATCTTAGAATGGGAATGAACTT-TGTATGCTTAGACTGGGGATGAACTCTG
130 TCCGATCTTAGAATGGGAATGAACTTCT-TATGCTGAGACTGGGGATGAACTCTG
* ** *
16266101 TATGCCTAAGTCAACCCACGAAATGAGCGTGCGGACGCTCAGTCGACCAAAGAGGCAGGATGC
1 TATGCCTAAGTCAACCCACGAAATGAGCGTGCGG-CGCTCAATCGACCGGAGAGGCAGAATGC
16266164 GTAAGCCGAG
Statistics
Matches: 208, Mismatches: 36, Indels: 6
0.83 0.14 0.02
Matches are distributed among these distances:
183 3 0.01
184 205 0.99
ACGTcount: A:0.23, C:0.26, G:0.29, T:0.22
Consensus pattern (183 bp):
TATGCCTAAGTCAACCCACGAAATGAGCGTGCGGCGCTCAATCGACCGGAGAGGCAGAATGCACA
AACCGGGGATCAGCCCGGTCCCCCCTGCATGCTGCCGATCATGCTGTCGCAACCCTCAGTCCGGT
CCGATCTTAGAATGGGAATGAACTTCTTATGCTGAGACTGGGGATGAACTCTG
Found at i:16267148 original size:26 final size:26
Alignment explanation
Indices: 16267119--16267171 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
16267109 CCGGTCTGAT
16267119 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
16267145 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
16267171 C
1 C
16267172 CCAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:16268680 original size:84 final size:82
Alignment explanation
Indices: 16268523--16268681 Score: 194
Period size: 84 Copynumber: 1.9 Consensus size: 82
16268513 TCAGAAGAGC
* * *
16268523 TGTGCGCAGCTGGGGCAGTCCACCCAAGCCCCTTACGGGACTAGTATGATGGTTGGTGTCAACCA
1 TGTGCGCAGCTGGGGCAGCCCACCCAAGCCCCTTACAGGACTAGCATGATGGTTGGTGTCAACCA
***
16268588 TGTGTGCGGGCGTCTGG
66 TACATGCGGGCGTCTGG
* * *
16268605 TGTGCTGCAGCTGGGGCAGCCCACCCAAGTCCCCTTGCAGGACTGGCATGAT-GTTGGGTGTCAG
1 TGTGC-GCAGCTGGGGCAGCCCACCCAAG-CCCCTTACAGGACTAGCATGATGGTT-GGTGTCAA
*
16268669 TCATACATGCGGG
63 CCATACATGCGGG
16268682 TGGCCGATAC
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
82 5 0.08
83 25 0.39
84 34 0.53
ACGTcount: A:0.16, C:0.26, G:0.35, T:0.23
Consensus pattern (82 bp):
TGTGCGCAGCTGGGGCAGCCCACCCAAGCCCCTTACAGGACTAGCATGATGGTTGGTGTCAACCA
TACATGCGGGCGTCTGG
Found at i:16269784 original size:24 final size:24
Alignment explanation
Indices: 16269750--16269811 Score: 88
Period size: 24 Copynumber: 2.6 Consensus size: 24
16269740 ACAAGCGGGA
* *
16269750 TGGTTAATGGACCATGAGCTGCAT
1 TGGTCAATGGACCATGAGCTACAT
* *
16269774 TGGTCAGTGGACCATGAGCTACGT
1 TGGTCAATGGACCATGAGCTACAT
16269798 TGGTCAATGGACCA
1 TGGTCAATGGACCA
16269812 CGAGTTCTCA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (24 bp):
TGGTCAATGGACCATGAGCTACAT
Found at i:16273007 original size:159 final size:155
Alignment explanation
Indices: 16272510--16273008 Score: 441
Period size: 159 Copynumber: 3.1 Consensus size: 155
16272500 GAATGTGACA
* * * *
16272510 CCGGGGATCAGCCCGATCCCCCTCTACGTGTTACCGATCCCGCTGCCACAACCCTTGGTTCGGTT
1 CCGGGGATCAGCCCGATCCCCCTCTGCGTGCTA-CGATCCCGCTACCACAACCCTCGGTTCGGTT
* **
16272575 GGGGTTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGG-GCACACGGACGC
65 GGGGCTTAGACATGGAATGAACT-CCTATGCCTAAG-CAACCCACGAAACGGCGTGCA-GG-CGC
* *
16272639 TCAGCCGACCGGAGAGGTAGAATGTGCAAG
126 TCAGCTGACCGGAGAGGTAGAATGCGCAAG
* * ** * * ** * *
16272669 CCGGGGATC-GACCAGGTTGCCCTCTGTGTGCTACAGATCCTGCTACCGTAACACTCGG-TCTGA
1 CCGGGGATCAG-CCCGATCCCCCTCTGCGTGCTAC-GATCCCGCTACCACAACCCTCGGTTC-GG
** ** * *
16272732 TCCGATCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCAGCC
63 TTGGGGCTTAGACAT-GGAATGAACTCC-TATGCCTAAG-CAACCCACGAAACG-GCGTGCAGGC
* * * *
16272796 GCTGAG-TCGACCGAAGAGGTATAATGCACAAG
124 GCTCAGCT-GACCGGAGAGGTAGAATGCGCAAG
* * * * * * *
16272828 TCGGGGATCGGCTCGGTCCCCCTCTGCGTGCTGTCGGTCCCGCTACTACAACCCTCGGTTCGGTT
1 CCGGGGATCAGCCCGATCCCCCTCTGCGTGCT-ACGATCCCGCTACCACAACCCTCGGTTCGGTT
*
16272893 GGGGCTTAGACATGGAATGAACTCTCTATGCCTAAGCAAACCCACGAAACAGGCGTGCAGGTGCT
65 GGGGCTTAGACATGGAATGAACTC-CTATGCCTAAGC-AACCCACGAAAC-GGCGTGCAGGCGCT
* * * *
16272958 CAGCTGGCTGGAGAGGCAGAATGCGTAAG
127 CAGCTGACCGGAGAGGTAGAATGCGCAAG
16272987 CCGGGGATCAGCCCGATCCCCC
1 CCGGGGATCAGCCCGATCCCCC
16273009 CTATGTGCTA
Statistics
Matches: 261, Mismatches: 63, Indels: 32
0.73 0.18 0.09
Matches are distributed among these distances:
158 8 0.03
159 240 0.92
160 10 0.04
161 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (155 bp):
CCGGGGATCAGCCCGATCCCCCTCTGCGTGCTACGATCCCGCTACCACAACCCTCGGTTCGGTTG
GGGCTTAGACATGGAATGAACTCCTATGCCTAAGCAACCCACGAAACGGCGTGCAGGCGCTCAGC
TGACCGGAGAGGTAGAATGCGCAAG
Found at i:16273091 original size:26 final size:26
Alignment explanation
Indices: 16273055--16273107 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16273045 TCGGTCCGAT
16273055 CTTAGACTGGGAAAGAACTCCATATG
1 CTTAGACTGGGAAAGAACTCCATATG
* * * *
16273081 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCATATG
16273107 C
1 C
16273108 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCATATG
Done.