Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19866354
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 74000 characters in sequence are not A, C, G, or T
File 75 of 100
Found at i:16273539 original size:368 final size:355
Alignment explanation
Indices: 16272875--16273539 Score: 820
Period size: 368 Copynumber: 1.8 Consensus size: 355
16272865 TCCCGCTACT
*
16272875 ACAACCCTCGGTTCGGTTGGGGCTTAGACATGGAATGAACTCTCTATGCCTAAGCAAACCCACGA
1 ACAACCCTCGGTTCAGTTGGGGCTTAGACATGGAATGAACTCTCTATGCCTAAGCAAACCCACGA
* * * * *
16272940 AACAGGCGTGCAGGTGCTCAGCTGGCTGGAGAGGCAGAATGCGTAAGCCGGGGATCAGCCCGATC
66 AACAGGCGTACAGGCGCTCAGCTGGCTGAAGAGGCAGAATGCGCAAGCCGGGGACCAGCCCGATC
* * ** *
16273005 CCCCCTATGTGCTACTGATCTTACTGTCACAACCCTTGGTTCGGTCCGATCTTAGACTGGGAAAG
131 CCCCCTATGTGCTACCGATCTTACTGTCACAACCCTCGGCCCGATCCGATCTTAGACTGGGAAAG
*** ** *
16273070 AACTCCATATGCTTAGATTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
196 AACTCCATATGCTTAGACACGAAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGC
* * *
16273135 GGGTACTCAATCAGCCAGAGAGGCATAATGCGCAAGCTGGGGATCAGCCCAATCCCCCTCTGCGT
261 GGGCACTCAACCAGCCAGAGAGGCAAAATGCGCAAGCTGGGGATCAGCCCAATCCCCCTCTGCGT
16273200 GCTGTCGATCCCGTTGTCAGTCCTGCTGCC
326 GCTGTCGATCCCGTTGTCAGTCCTGCTGCC
*
16273230 ACAACCCTCGGTTCAGTTGGGGCTTAGACATGGAATGAACTC-CATATGCCTAAGCCAACCCACG
1 ACAACCCTCGGTTCAGTTGGGGCTTAGACATGGAATGAACTCTC-TATGCCTAAGCAAACCCACG
* * * *
16273294 AAAC-GAGCGTACGGGCGCTCAG-TCGGTTGAAGAGGTAGAATGCGCAAGCCGGGGACC-GACCT
65 AAACAG-GCGTACAGGCGCTCAGCT-GGCTGAAGAGGCAGAATGCGCAAGCCGGGGACCAG-CCC
*
16273356 GATCCTCCCT-TGCATGCTACCGATCCTGCTACTGGTCCTACTGCCACAACCCTCGGCCCGATCC
127 GATCCCCCCTATG--TGCTACCGAT-CT--TACT-G------T--CACAACCCTCGGCCCGATCC
* *
16273420 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACACGAAATGAACTCCGTATGCCTAAGCCAA
178 GATCTTAGACTGGGAAAGAACTCCATATGCTTAGACACGAAATGAACTCCGTATGCCTAAGCCAA
* ** * *
16273485 CCCATGAAACGAGCGTGCGGGCGGTCAACC-GATCGGAGAGGCAAAATGCGCAAGC
243 CCCACGAAACGAGCGTGCGGGCACTCAACCAG-CCAGAGAGGCAAAATGCGCAAGC
16273540 CAGGGACCTG
Statistics
Matches: 258, Mismatches: 33, Indels: 25
0.82 0.10 0.08
Matches are distributed among these distances:
354 6 0.02
355 116 0.45
356 9 0.03
357 2 0.01
359 4 0.02
360 1 0.00
366 1 0.00
367 1 0.00
368 118 0.46
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (355 bp):
ACAACCCTCGGTTCAGTTGGGGCTTAGACATGGAATGAACTCTCTATGCCTAAGCAAACCCACGA
AACAGGCGTACAGGCGCTCAGCTGGCTGAAGAGGCAGAATGCGCAAGCCGGGGACCAGCCCGATC
CCCCCTATGTGCTACCGATCTTACTGTCACAACCCTCGGCCCGATCCGATCTTAGACTGGGAAAG
AACTCCATATGCTTAGACACGAAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGC
GGGCACTCAACCAGCCAGAGAGGCAAAATGCGCAAGCTGGGGATCAGCCCAATCCCCCTCTGCGT
GCTGTCGATCCCGTTGTCAGTCCTGCTGCC
Found at i:16273705 original size:135 final size:135
Alignment explanation
Indices: 16273460--16273706 Score: 307
Period size: 135 Copynumber: 1.8 Consensus size: 135
16273450 TTAGACACGA
* * ** * *
16273460 AATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGGTCAACCGATCGGAGAG
1 AATGAACTCCGTATGCCTAAACCAACCCACGAAACGAGCGTGCGGGCACTCAACCGACCGAAGAG
**
16273525 GCAAAATGCGCAAGCCAGGGACCTGCTCGGTCCCCCCCTGTGTGCTGTTGATCCTGCTGCTTAGA
66 GCAAAATGCGCAAGCCAGGGACCTGCTCGGTCCCCCCCTACGTGCTGTTGATCCTGCTGCTTAGA
16273590 CTGGG
131 CTGGG
* * * * * *
16273595 AATGAACTCCGTATGCCTAAATCAACCCACGAAACGAGCGTTCGGGCACTGAGCGGGCCGAAGAG
1 AATGAACTCCGTATGCCTAAACCAACCCACGAAACGAGCGTGCGGGCACTCAACCGACCGAAGAG
* * * * *
16273660 GCATAATGCGTAAGCTAGGGATC-GCTCCGGTCCCCCTCTACGTGCTG
66 GCAAAATGCGCAAGCCAGGGACCTGCT-CGGTCCCCCCCTACGTGCTG
16273707 CTGGTCCCGC
Statistics
Matches: 92, Mismatches: 19, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
134 3 0.03
135 89 0.97
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.18
Consensus pattern (135 bp):
AATGAACTCCGTATGCCTAAACCAACCCACGAAACGAGCGTGCGGGCACTCAACCGACCGAAGAG
GCAAAATGCGCAAGCCAGGGACCTGCTCGGTCCCCCCCTACGTGCTGTTGATCCTGCTGCTTAGA
CTGGG
Found at i:16273945 original size:26 final size:26
Alignment explanation
Indices: 16273902--16273953 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16273892 TGATCCAATT
* *
16273902 TTAGATTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATAAACTCCGTATGC
*
16273928 TTAGACTGGGGATAAACTCCGTATGC
1 TTAGACTGGGAATAAACTCCGTATGC
16273954 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATAAACTCCGTATGC
Found at i:16275044 original size:159 final size:157
Alignment explanation
Indices: 16274620--16275056 Score: 434
Period size: 159 Copynumber: 2.8 Consensus size: 157
16274610 TCCATACGCT
* * *
16274620 TAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCATAAAATGAGG-GTACGGGCGCTCAGCC
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA-CAGGCGTACGGGCGCTCAG-C
* * * * * *
16274684 T-GCCGGAGAGGCAGAATGAGCAAGCCGAGGATCGACCTGATCTCTCCCTGCGTGCTGTTGATCC
64 TGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCG-CCTGGTC-CCCCCTACGTGCTGTTGATCC
* * * * *
16274748 TGCTACCACAACCCTCGGTCCGATCTGAGCT
127 CGCTACCACAACCCACAGTCCGAGCTGAGCC
* * * * * * *
16274779 TAGACAGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAAC-GAGCATTCAGGCGCTGAGTT
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAG-GCGTACGGGCGCTCAGCT
* * * * *
16274843 GGTCGAAGAGGCATAATGCGCAAGTCGGGGATCGGCTCGGTCCCCCTCTATGTGCTGCTTG-TCC
65 GGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGCCT-GGTCCCCC-CTACGTGCTG-TTGATCC
* * *
16274907 CGCTAGCACAACCCACAGTCTG-GCTAGGGCC
127 CGCTACCACAACCCACAGTCCGAGCT-GAGCC
* * * * *
16274938 TAGACATGGAATGAACTCCCTATGCATAAGCCAACCCACGAAACAGGCGTGCGGGCGCTTAGCTG
1 TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAGGCGTACGGGCGCTCAGCTG
*
16275003 GTCGGAGAGGCAGAATGCGCAAGCCGGGGATTAGCCTGGTCCCCCCTACGTGCT
66 GTCGGAGAGGCAGAATGCGCAAGCCGGGGA-TCGCCTGGTCCCCCCTACGTGCT
16275057 ATCGATCTTG
Statistics
Matches: 224, Mismatches: 45, Indels: 19
0.78 0.16 0.07
Matches are distributed among these distances:
157 1 0.00
158 17 0.08
159 198 0.88
160 8 0.04
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (157 bp):
TAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAGGCGTACGGGCGCTCAGCTG
GTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGCCTGGTCCCCCCTACGTGCTGTTGATCCCGCT
ACCACAACCCACAGTCCGAGCTGAGCC
Found at i:16275124 original size:26 final size:26
Alignment explanation
Indices: 16275095--16275146 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
16275085 CGATTCAATT
16275095 TTAGACGGGGGATGAACTCCGTATGC
1 TTAGACGGGGGATGAACTCCGTATGC
*
16275121 TTAGACGGGGGATGAACTCTGTATGC
1 TTAGACGGGGGATGAACTCCGTATGC
16275147 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.17, G:0.35, T:0.25
Consensus pattern (26 bp):
TTAGACGGGGGATGAACTCCGTATGC
Found at i:16275854 original size:26 final size:26
Alignment explanation
Indices: 16275816--16275868 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16275806 GGTTCAAAAT
16275816 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16275842 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16275868 C
1 C
16275869 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16276354 original size:159 final size:159
Alignment explanation
Indices: 16276136--16276628 Score: 446
Period size: 159 Copynumber: 3.1 Consensus size: 159
16276126 AGACCGACCT
* * * *
16276136 GATCCTCC-CTGTGTGCTGTCGATCCTACTACCGCAACCTTCAGTCTGGTCT--GATCTTAGAC-
1 GATCCCCCTCTGTGTGCTGTCGGTCCCACTACCACAACCTTCAGTCTGG-CTGGGA-CTTAGACA
* * * ** * *
16276197 TGGGAATGAACTCCGTATGCGTAAGTCAACCAACGAAAT-GAGTGTGCGGGCACTGAGCC-AGCC
64 T-GGAATGAACTCCCTATGCCTAAGCCAACCAACGAAATGGA-CATGCGGGCACTCAACCGA-CC
* * * *
16276260 GAAGAGGCATAATGTGTAAGCCAGGGATTAGCCC
126 GAAGAGGCAGAATGCGCAAGCCAGGGATCAGCCC
16276294 GATCCCCCTCTGTGTGCTGTCGGTCCCACTACCACAACCTTCAGTCTGGCTGGGACTTAGACATG
1 GATCCCCCTCTGTGTGCTGTCGGTCCCACTACCACAACCTTCAGTCTGGCTGGGACTTAGACATG
* * * * *
16276359 GAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGACATGCGGGCGCTCAACCGATCGGAGA
66 GAATGAACTCCCTATGCCTAAGCCAACCAACGAAATGGACATGCGGGCACTCAACCGACCGAAGA
* * *
16276424 GGCAGAATGCGCAAGCCGGGGATCGGCCT
131 GGCAGAATGCGCAAGCCAGGGATCAGCCC
* * * *
16276453 GGTCCCCATCTGCGTGCTGTCGGTCCCACTACCACAACCCTCAGT-TCGGCTGTGG-CTTAGACA
1 GATCCCCCTCTGTGTGCTGTCGGTCCCACTACCACAACCTTCAGTCT-GGCTG-GGACTTAGACA
* * * * * * * * * *** * *
16276516 TCGAATGAACTCCTTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGACTCTCAGTAGGCCGGA
64 TGGAATGAACTCCCTATGCCTAAGCCAACCAACGAAATGGACATGCGGGCACTCAACCGACCGAA
* * *
16276581 GAGGCAGAATGCGCAAGTCATGGATCAGTCC
129 GAGGCAGAATGCGCAAGCCAGGGATCAGCCC
* *
16276612 GGTCCCCC-CTGCGTGCT
1 GATCCCCCTCTGTGTGCT
16276629 ACCGATCCTG
Statistics
Matches: 281, Mismatches: 46, Indels: 16
0.82 0.13 0.05
Matches are distributed among these distances:
158 19 0.07
159 254 0.90
160 8 0.03
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.21
Consensus pattern (159 bp):
GATCCCCCTCTGTGTGCTGTCGGTCCCACTACCACAACCTTCAGTCTGGCTGGGACTTAGACATG
GAATGAACTCCCTATGCCTAAGCCAACCAACGAAATGGACATGCGGGCACTCAACCGACCGAAGA
GGCAGAATGCGCAAGCCAGGGATCAGCCC
Found at i:16276702 original size:26 final size:26
Alignment explanation
Indices: 16276666--16276718 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16276656 CCAGTCCAAT
*
16276666 CTTAGATTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
16276692 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
16276718 C
1 C
16276719 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:16277767 original size:26 final size:26
Alignment explanation
Indices: 16277731--16277783 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16277721 CCGGTTCAAT
*
16277731 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16277757 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16277783 C
1 C
16277784 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16278496 original size:26 final size:26
Alignment explanation
Indices: 16278459--16278510 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16278449 GCTCAAACTT
* *
16278459 TTAGACTAGGAATGAATTTCGTATGC
1 TTAGACTAGGAATGAACTCCGTATGC
16278485 TTAGAC-ATGGAATGAACTCCGTATGC
1 TTAGACTA-GGAATGAACTCCGTATGC
16278511 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATGC
Found at i:16278842 original size:26 final size:26
Alignment explanation
Indices: 16278801--16278853 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16278791 CCAATCTGAT
16278801 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
16278827 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16278853 C
1 C
16278854 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16280227 original size:68 final size:68
Alignment explanation
Indices: 16280118--16280250 Score: 239
Period size: 68 Copynumber: 2.0 Consensus size: 68
16280108 CGGGGATCGG
*
16280118 CCCGATCCCCCTTACGTGCTACCGATCCTACTGTCGATCCTGCTGTCGCAACCCTTAATCCGATC
1 CCCGATCCCCCTTACGTGCTACCGATCCTACTGTCGATCCTGCTATCGCAACCCTTAATCCGATC
16280183 TGA
66 TGA
* *
16280186 CCCGATCCCCCTTACGTGTTGCCGATCCTACTGTCGATCCTGCTATCGCAACCCTTAATCCGATC
1 CCCGATCCCCCTTACGTGCTACCGATCCTACTGTCGATCCTGCTATCGCAACCCTTAATCCGATC
16280251 CGATCTTAGA
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
68 62 1.00
ACGTcount: A:0.17, C:0.40, G:0.16, T:0.27
Consensus pattern (68 bp):
CCCGATCCCCCTTACGTGCTACCGATCCTACTGTCGATCCTGCTATCGCAACCCTTAATCCGATC
TGA
Found at i:16280291 original size:26 final size:26
Alignment explanation
Indices: 16280255--16280307 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16280245 CCGATCCGAT
*
16280255 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
*
16280281 CTTAGACTGGGGATAAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
16280307 C
1 C
16280308 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:16280828 original size:159 final size:156
Alignment explanation
Indices: 16280431--16280945 Score: 446
Period size: 158 Copynumber: 3.2 Consensus size: 156
16280421 CTACTGCTGT
*
16280431 AACCCTCGGTCCGGTTCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA
1 AACCCTCGGTCCGGCT-GATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA
* * * * * *
16280496 TGAGG-GTGTGGGCGCTCAGCCGTCCAGAAAGGTAGAATGCGCAAGCCGGGGACCGACCCGATCC
65 -CAGGCGTGCGGGTGCTCAGCCG-CCAGAGAGGTAGAATGCGTAAGCCGGGGATCGACCCGATCC
* * * ** *
16280560 CCCCTGTATGCTGTCGATCTTGCTGCCGC
128 CCCCTGCATGCTATCAATCCCGCTGCCAC
* * * * *
16280589 AACCCTTGGTCCGATCTGATCTTAGACTGGGAATGAACTACGTATGCCTAAGTCAACCCATGAAA
1 AACCCTCGGTCCG-GCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA
* * * * * * * * *
16280654 C-GAGCATTCGAGTGCTGAGCCAGCCAGAGAGGCATAATGCGTAAGCCGGGGATTGGCTCGATCC
65 CAG-GCGTGCGGGTGCTCAGCC-GCCAGAGAGGTAGAATGCGTAAGCCGGGGATCGACCCGATCC
*
16280718 CTCTCTGCATGCTATCAATCCCGCTGCCAC
128 C-CCCTGCATGCTATCAATCCCGCTGCCAC
** * *
16280748 AACCCTCGGTCCGGCTGGGGCTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
1 AACCCTCGGTCCGGCT-GATCTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAA
* * * *
16280812 ACAGGCGTGCGGGTGCTCAGTCGGCCGGAGAGATAGAATGCGTAAGCTGGGGATC-AGCCCGATC
64 ACAGGCGTGCGGGTGCTCAG-CCGCCAGAGAGGTAGAATGCGTAAGCCGGGGATCGA-CCCGATC
* *** * * * * *
16280876 CTCCCTATGTGCCA-CTGATCCTGCTGTCGC
127 CCCCCTGCATGCTATC-AATCCCGCTGCCAC
* * *
16280906 AACCCTTGATCCGGTCTTATCTTAGACTAGGAATGAACTC
1 AACCCTCGGTCCGG-CTGATCTTAGACTAGGAATGAACTC
16280946 TACATGGTTA
Statistics
Matches: 279, Mismatches: 65, Indels: 26
0.75 0.18 0.07
Matches are distributed among these distances:
156 1 0.00
157 2 0.01
158 150 0.54
159 124 0.44
160 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.21
Consensus pattern (156 bp):
AACCCTCGGTCCGGCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAC
AGGCGTGCGGGTGCTCAGCCGCCAGAGAGGTAGAATGCGTAAGCCGGGGATCGACCCGATCCCCC
CTGCATGCTATCAATCCCGCTGCCAC
Found at i:16281162 original size:26 final size:26
Alignment explanation
Indices: 16281133--16281185 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16281123 CTAATCTGAT
16281133 CTTAGAC-TGGGAATGAACTCTATATG
1 CTTAGACAT-GGAATGAACTCTATATG
*
16281159 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCTATATG
16281185 C
1 C
16281186 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTATATG
Found at i:16281506 original size:159 final size:158
Alignment explanation
Indices: 16281158--16281588 Score: 456
Period size: 159 Copynumber: 2.7 Consensus size: 158
16281148 AACTCTATAT
* *
16281158 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAG
* * * * * * * *
16281223 CGGACCGAAGAGGTAGAATGCGTAAGTCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCC
66 CAGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCAGTCCCCCCGGCATGCTGTCGATCC
* *
16281288 TACTGCCGCAACCCTTGGTCCGATCCGA
131 TACTGCCACAACCCTCGGTCCGATCCGA
* * * * *
16281316 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTTCAGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCA
* * * *
16281380 GCCAG-CCGGAGAGGCATAATGCGCAAGCCAGGGATCGGCCCATTCCCCCTCGGCATGCTGTGGG
65 G-CAGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCAGTCCCCC-CGGCATGCTGT-CG
* * * ** *
16281444 TTCC-GCTGCCACAACCCTCGGTCCGGTTGGG
127 ATCCTACTGCCACAACCCTCGGTCCGATCCGA
* * * *
16281475 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAG
* * * * * *
16281540 CCGA-CTAGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGGTCCCCCC
66 CAGACCGA-AGAGGCAGAATGCGCAAGCCAGGGATCGGCCCAGTCCCCCC
16281589 TGCGTGCTAC
Statistics
Matches: 221, Mismatches: 45, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
157 1 0.00
158 96 0.43
159 119 0.54
160 5 0.02
ACGTcount: A:0.22, C:0.31, G:0.29, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAG
CAGACCGAAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCAGTCCCCCCGGCATGCTGTCGATCC
TACTGCCACAACCCTCGGTCCGATCCGA
Found at i:16282635 original size:26 final size:26
Alignment explanation
Indices: 16282605--16282657 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16282595 GTTAGCGTAG
16282605 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16282631 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16282657 G
1 G
16282658 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16282794 original size:28 final size:28
Alignment explanation
Indices: 16282762--16282820 Score: 91
Period size: 28 Copynumber: 2.1 Consensus size: 28
16282752 CTCTCCAATT
*
16282762 GGCTGAGCACCCGCACGCTCGTTTCGTG
1 GGCTGAGCACCCACACGCTCGTTTCGTG
* *
16282790 GGCTGAGCGCCCACACGCTTGTTTCGTG
1 GGCTGAGCACCCACACGCTCGTTTCGTG
16282818 GGC
1 GGC
16282821 CGATCCCCGG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.10, C:0.34, G:0.34, T:0.22
Consensus pattern (28 bp):
GGCTGAGCACCCACACGCTCGTTTCGTG
Found at i:16282936 original size:26 final size:26
Alignment explanation
Indices: 16282907--16282959 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16282897 GTTGACTTAG
16282907 GCATACAGAGTTCATCTCC-AGTCTAA
1 GCATACAGAGTTCAT-TCCTAGTCTAA
16282933 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
16282959 G
1 G
16282960 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 3 0.12
26 23 0.88
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:16283968 original size:26 final size:26
Alignment explanation
Indices: 16283932--16283984 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16283922 GTTGGCTGAG
16283932 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
16283958 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16283984 G
1 G
16283985 AGATTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16284671 original size:26 final size:26
Alignment explanation
Indices: 16284641--16284693 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16284631 GTTGACTTAG
*
16284641 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
* *
16284667 GCATATGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
16284693 G
1 G
16284694 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGCCTAA
Found at i:16284982 original size:159 final size:158
Alignment explanation
Indices: 16284738--16286278 Score: 1020
Period size: 159 Copynumber: 9.7 Consensus size: 158
16284728 GACAGCACGC
** * *
16284738 AGGGGGA-TCGGGTCGATCCCTGGCTTGCACATTCTGCCTCTCC-AGTCGACTGAGCACCCGCAC
1 AGGGGGACT-GGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGA-TCGACTGAGCTCCCGCAC
** *
16284801 GC-CTGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCG
64 GCTC-GTTTCCTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCG
* * *
16284865 AGGGTTGTGGTAGCGGTACCGGCAGCATACAG
128 AGGGTTGTGGCAGCGG-ACCGACAGCATGCAG
* * * * * * * * ** * * *
16284897 AAGGGGACTGTGTCGATCCTCGGCTTGCGCATTATGCCTCTCCGGTCGATTCAGCTTTCGAATGG
1 AGGGGGACTGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCTCCCGCACGC
* * ** ** * *
16284962 TCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAGATCGAACCAGACCGAG
66 TCGTTTCCTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGCCAGACCGAG
* * * *
16285026 GGTTGCGGTAGCAGGATCGACAACATGCAG
130 GGTTGTGGCAGC-GGACCGACAGCATGCAG
* ** * * * *
16285056 -GGAGGACCAGGT-TAGTCCCC-GACTTGCGCATTCTGCCTCTCCGATTGGCTGAGCGCCCGCAC
1 AGGGGGACTGGGTCGA-TCCCCAG-CTTGCGCATTCTGCCTCTCCGATCGACTGAGCTCCCGCAC
* * * *
16285118 GCCCGTTTCCTGGGTTGGCTTAGACATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGA
64 GCTCGTTTCCTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGA
16285183 GGGTTGTGGCAGCGGGACCGACAGCATGCAG
129 GGGTTGTGGCAGC-GGACCGACAGCATGCAG
* * * * * * *
16285214 AGGGGGACTGGGTTGATCCCTAGCTTGCGTATTCTACCTCTCCGACCGACTGAGCACCCGCATGC
1 AGGGGGACTGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCTCCCGCACGC
* * * * *
16285279 CCGTTTCGTGGGTTGGCTTTGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTGAAG
66 TCGTTTCCTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGG
* * *
16285344 GTTGTGACAGCAGGACCGGCAGCACGCAG
131 GTTGTGGCAGC-GGACCGACAGCATGCAG
* * * * * * * *
16285373 AGGGGGA-TCGGGCCAATCCCCAGCTTACGCATTATGCCTCTTCG-GCTGGCTCAG-TGCCCGCA
1 AGGGGGACT-GGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGATC-GACTGAGCT-CCCGCA
* * * * * **
16285435 CGCTCGTTTCGTTGGTTGACTTACGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGAC
63 CGCTCGTTTCCTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGAC
* * * * * *
16285498 CGAGGGTTATGGTAGTAGGATCAACAGCACGCAG
126 CGAGGGTTGTGGCAG-CGGACCGACAGCATGCAG
** * * ** * * *
16285532 -GGAAGACCGGGTCGGTCTTCAGCTTGTGCATTCTACCTCTCCAATCGACTGAG-TGCCCGCACG
1 AGGGGGACTGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCT-CCCGCACG
* * * * *
16285595 CTCCTTTCCTGGGTTGGCTTAGGCATAGGGAGTTCATTACATGTCTAAGCCTCAGTCAAACCGAG
65 CTCGTTTCCTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAG
* *
16285660 GGTTGTGGCAACGGGACCGGCAGCATGCAG
130 GGTTGTGGCAGC-GGACCGACAGCATGCAG
* * * *
16285690 AGGGGGACTGGGTCGATCCCC-GACTTGCTCATTTTGCCTCTCCGGGTCGGACTGAGCGCCCGCA
1 AGGGGGACTGGGTCGATCCCCAG-CTTGCGCATTCTGCCTCTCC-GATC-GACTGAGCTCCCGCA
* * * * * *
16285754 TGC-CTGTTT-C-AGG-TGGCGTTAGGCACAGTGAG-TCATTACCATGTCTAAGCCCTAGCCGGA
63 CGCTC-GTTTCCTGGGTTGGC-TTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGCCAGA
** * * *
16285814 CTAAGGGTTGTGGCAGCGGGACCGATAACACGCAG
125 CCGAGGGTTGTGGCAGC-GGACCGACAGCATGCAG
* * * * * * * * * * **
16285849 AGGGGGA-TCGGGCCGATCCCTAGCTTGCGTATTATGCCTTTTCGGTCGGCTCAGCACCCAAACG
1 AGGGGGACT-GGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCTCCCGCACG
* * ** * ** *
16285913 CTCGTTTCGTGGGTTGACTTAGGCATACAGAATTCATTCCCA-GTCTAAG-ATCAGACCAGACCA
65 CTCGTTTCCTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACCG
** * * * * *
16285976 AGGGTTGTTACAGTAGGATCGATAGCACGTAG
128 AGGGTTGTGGCAG-CGGACCGACAGCATGCAG
*** ** * * ** *
16286008 A-GGGGACCAAGTCGATCCCTGGCTTGCGCATTCTACCTCACCGATCGGTTGAGCGCCCGCACGC
1 AGGGGGACTGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCTCCCGCACGC
* ** * *
16286072 CCGTTTGATGAGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTAGA-CGAGG
66 TCGTTTCCTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGG
* *
16286136 GTTGT-GCAAACGGGACCAGTAGCA-CAT--AA
131 GTTGTGGC-AGC-GGACC-G-A-CAGCATGCAG
* * * ** * * *
16286165 AGGGGGA-TCGGGCCGATCCCTAGCTTGCGCATTCTGCCT-TAACGGCCGGCTGAGCGCCTGCAC
1 AGGGGGACT-GGGTCGATCCCCAGCTTGCGCATTCTGCCTCT-CCGATCGACTGAGCTCCCGCAC
* * **
16286228 ACTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
64 GCTCGTTTCCTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
16286279 ATACGGAGTT
Statistics
Matches: 1059, Mismatches: 273, Indels: 101
0.74 0.19 0.07
Matches are distributed among these distances:
156 1 0.00
157 42 0.04
158 425 0.40
159 544 0.51
160 29 0.03
161 18 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
AGGGGGACTGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCTCCCGCACGC
TCGTTTCCTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGG
GTTGTGGCAGCGGACCGACAGCATGCAG
Found at i:16285256 original size:317 final size:317
Alignment explanation
Indices: 16284674--16286277 Score: 1205
Period size: 317 Copynumber: 5.1 Consensus size: 317
16284664 TAAGCATATG
* * * ** *
16284674 GAGTTCATTCCCAGCCTAAGATCAGATCAGACCGAAGGTTACGGTAGCAGGATCGACAGCACGCA
1 GAGTTCATTCCCAGTCTAAGATCA-ACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCA
* * * * * *
16284739 G-GGGGATC-GGGTCGATCCCTGGCTTGCACATTCTGCCTCTCC-AGTCGACTGAGCACCCGCAC
65 GAGGGGACCAGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGA-TCGGCTGAGCGCCCGCAC
* ** *
16284801 GCCTGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGA
129 GCCCGTTTCCTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGA
* * * ** * * *
16284866 GGGTTGTGGTAGCGGTACCGGCAGCATACAGAAGGGGACTGTGTCGATCCTCGGCTTGCGCATTA
194 GGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACTGGGTCGATCCTCAGCTTGCGCATTA
* * * *** * * *
16284931 TGCCTCTCCGGTCGATTCAGCTTTCGAATGGTCGTTTCATGGGTTGACTTAGGCATACA
259 TACCTCTCCGATCGACTCAGCACCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACA
* * * *
16284990 GAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGTAGCAGGATCGACAACATGCA
1 GAGTTCATTCCCAGTCTAAGATC-AACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCA
* * *
16285055 G-GGAGGACCAGGTTAG-TCCCCGACTTGCGCATTCTGCCTCTCCGATTGGCTGAGCGCCCGCAC
65 GAGG-GGACCAGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCAC
* * *
16285118 GCCCGTTTCCTGGGTTGGCTTAGACATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGA
129 GCCCGTTTCCTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGA
* * *
16285183 GGGTTGTGGCAGCGGGACCGACAGCATGCAGAGGGGGACTGGGTTGATCC-CTAGCTTGCGTATT
194 GGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACTGGGTCGATCCTC-AGCTTGCGCATT
* * * * * * * * **
16285247 CTACCTCTCCGACCGACTGAGCACCCGCATGCCCGTTTCGTGGGTTGGCTTTGGCATAGG
258 ATACCTCTCCGATCGACTCAGCACCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACA
** * * * * * *
16285307 GAGTTCATT-CCATGTCTAAGCCCCAGCCAGACTGAAGGTTGTGACAGCAGGACCGGCAGCACGC
1 GAGTTCATTCCCA-GTCTAAG-ATCAACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGC
* * * * * * * * *
16285371 AGAGGGGGATC-GGGCCAATCCCC-AGCTTACGCATTATGCCTCTTCG-GCTGGCTCAGTGCCCG
64 AGA-GGGGACCAGGGTCGATCCCCGA-CTTGCGCATTCTGCCTCTCCGATC-GGCTGAGCGCCCG
* * * * * * **
16285433 CACGCTCGTTTCGTTGGTTGACTTACGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAG
126 CACGCCCGTTTCCTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAG
* * ** * * ** * * * *
16285496 ACCGAGGGTTATGGTAGTAGGATCAACAGCACGCAG-GGAAGACCGGGTCGGTCTTCAGCTTGTG
189 ACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACTGGGTCGATCCTCAGCTTGCG
* * * ** * * * * **
16285560 CATTCTACCTCTCCAATCGACTGAGTGCCCGCACGCTCCTTTCCTGGGTTGGCTTAGGCATAGG
254 CATTATACCTCTCCGATCGACTCAGCACCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACA
* * ** * * * * * *
16285624 GAGTTCATT-ACATGTCTAAGCCTCAGTCAAACCGAGGGTTGTGGCAACGGGACCGGCAGCATGC
1 GAGTTCATTCCCA-GTCTAAG-ATCAACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGC
* * * *
16285688 AGAGGGGGA-CTGGGTCGATCCCCGACTTGCTCATTTTGCCTCTCCGGGTCGGACTGAGCGCCCG
64 AGA-GGGGACCAGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCC-GATCGG-CTGAGCGCCCG
* * * * * * *
16285752 CATGCCTGTTT-C-AGG-TGGCGTTAGGCACAGTGAG-TCATTACCATGTCTAAGCCCTAGCCGG
126 CACGCCCGTTTCCTGGGTTGGC-TTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGCCAG
** * * *
16285813 ACTAAGGGTTGTGGCAGCGGGACCGATAACACGCAGAGGGGGA-TCGGGCCGATCC-CTAGCTTG
189 ACCGAGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACT-GGGTCGATCCTC-AGCTTG
* * * * * * *
16285876 CGTATTATGCCTTTTCGGTCGGCTCAGCACCCAAACGCTCGTTTCGTGGGTTGACTTAGGCATAC
252 CGCATTATACCTCTCCGATCGACTCAGCACCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATAC
16285941 A
317 A
* * ** * * *
16285942 GAATTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGTTACAGTAGGATCGATAGCACGTA
1 GAGTTCATTCCCAGTCTAAGATCA-ACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCA
* * * * * *
16286007 GAGGGGACCA-AGTCGATCCCTGGCTTGCGCATTCTACCTCACCGATCGGTTGAGCGCCCGCACG
65 GAGGGGACCAGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACG
** * *
16286071 CCCGTTTGATGAGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTAGA-CGAG
130 CCCGTTTCCTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAG
* * ** * *
16286135 GGTTGT-GCAAACGGGACC-AGTAGCACATAAAGGGGGA-TCGGGCCGATCC-CTAGCTTGCGCA
195 GGTTGTGGC-AGCGGGACCGA-CAGCACGCAGAGGGGGACT-GGGTCGATCCTC-AGCTTGCGCA
* * * ** * * * * * * *
16286196 TTCTGCCT-TAACGGCCGGCTGAGCGCCTGCACACTCGTTTCGTGGGTTGGCTTAGGCATACA
256 TTATACCTCT-CCGATCGACTCAGCACCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACA
16286258 GAGTTCATT-CCATGTCTAAG
1 GAGTTCATTCCCA-GTCTAAG
16286278 CATACGGAGT
Statistics
Matches: 1021, Mismatches: 230, Indels: 74
0.77 0.17 0.06
Matches are distributed among these distances:
315 26 0.03
316 198 0.19
317 531 0.52
318 241 0.24
319 25 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (317 bp):
GAGTTCATTCCCAGTCTAAGATCAACCAGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAG
AGGGGACCAGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGC
CCGTTTCCTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGG
GTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACTGGGTCGATCCTCAGCTTGCGCATTATA
CCTCTCCGATCGACTCAGCACCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACA
Found at i:16285630 original size:476 final size:473
Alignment explanation
Indices: 16284738--16286278 Score: 1702
Period size: 476 Copynumber: 3.2 Consensus size: 473
16284728 GACAGCACGC
* * *
16284738 AGGGGGATCGGGTCGATCCCTGGCTTGCACATTCTGCCTCTCC-AGTCGACTGAGCACCCGCACG
1 AGGGGGATCGGGTCGATCCCTAGCTTGCGCATTCTGCCTCTCCGA-CCGACTGAGCACCCGCACG
* * * * *
16284802 CCTGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAG
65 CCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTGAA
* ** * * * * *
16284867 GGTTGTGGTAGCGGTACCGGCAGCATACAGAAGGGGA-CTGTGTCGATCCTCGGCTTGCGCATTA
130 GGTTGTGGCAGCGG-ACCGGCAGCACGCAGAGGGGGATC-GGGCCGATCCCCAGCTTGCGCATTA
* ** ** * * *
16284931 TGCCTCTCCGGTCGATTCAGCTTTCGAATGGTCGTTTCATGGGTTGACTTAGGCATACAGAGTTC
193 TGCCTCTTCGGTCGGCTCAG-TCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTC
* * * *
16284996 ATTCCCAGTCTAAGATC-GAACCAGACCGAGGGTTGCGGTAGCAGGATCGACAACATGCAGGGAG
257 ATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGTGGTAGTAGGATCGACAGCACGCAGGGAG
** * * *
16285060 GACCAGGTTAGTCCCCGACTTGCGCATTCTGCCTCTCCGATTGGCTGAGCGCCCGCACGCCCGTT
321 GACCAGGTCGGTCCCAG-CTTGCGCATTCTACCTCTCCGATCGGCTGAGCGCCCGCACGCCCGTT
* *
16285125 TCCTGGGTTGGCTTAGACATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGT
385 TCCTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGT
*
16285190 GGCAGCGGGACCGACAGCATGCAG
450 GGCAACGGGACCGACAGCATGCAG
* * * *
16285214 AGGGGGA-CTGGGTTGATCCCTAGCTTGCGTATTCTACCTCTCCGACCGACTGAGCACCCGCATG
1 AGGGGGATC-GGGTCGATCCCTAGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCACCCGCACG
*
16285278 CCCGTTTCGTGGGTTGGCTTTGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTGAA
65 CCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTGAA
* * *
16285343 GGTTGTGACAGCAGGACCGGCAGCACGCAGAGGGGGATCGGGCCAATCCCCAGCTTACGCATTAT
130 GGTTGTGGCAGC-GGACCGGCAGCACGCAGAGGGGGATCGGGCCGATCCCCAGCTTGCGCATTAT
* * * *
16285408 GCCTCTTCGG-CTGGCTCAGTGCCCGCACGCTCGTTTCGTTGGTTGACTTACGCATACGGAGTTC
194 GCCTCTTCGGTC-GGCTCAGT-CCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTC
* * *
16285472 ATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTATGGTAGTAGGATCAACAGCACGCAGGGAAG
257 ATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGTAGGATCGACAGCACGCAGGGAGG
* * * * * *
16285537 ACCGGGTCGGTCTTCAGCTTGTGCATTCTACCTCTCCAATCGACTGAGTGCCCGCACGCTCC-TT
322 ACCAGGTCGGTC-CCAGCTTGCGCATTCTACCTCTCCGATCGGCTGAGCGCCCGCACGC-CCGTT
* * *
16285601 TCCTGGGTTGGCTTAGGCATAGGGAGTTCATTACATGTCTAAGCCTCAGTCAAACCGAGGGTTGT
385 TCCTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGT
*
16285666 GGCAACGGGACCGGCAGCATGCAG
450 GGCAACGGGACCGACAGCATGCAG
* * * * * *
16285690 AGGGGGA-CTGGGTCGATCCC-CGACTTGCTCATTTTGCCTCTCCGGGTCGGACTGAGCGCCCGC
1 AGGGGGATC-GGGTCGATCCCTAG-CTTGCGCATTCTGCCTCTCC--GACCGACTGAGCACCCGC
* * * * * * *
16285753 ATGCCTGTTTC--AGG-TGGCGTTAGGCACAGTGAG-TCATTACCATGTCTAAGCCCTAGCCGGA
62 ACGCCCGTTTCGTGGGTTGGC-TTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGCCAGA
** * *
16285814 CT-AAGGGTTGTGGCAGCGGGACCGATAACACGCAGAGGGGGATCGGGCCGATCCCTAGCTTGCG
125 CTGAA-GGTTGTGGCAGC-GGACCGGCAGCACGCAGAGGGGGATCGGGCCGATCCCCAGCTTGCG
* * * *
16285878 TATTATGCCTTTTCGGTCGGCTCAGCACCCAAACGCTCGTTTCGTGGGTTGACTTAGGCATACAG
188 CATTATGCCTCTTCGGTCGGCTCAG-TCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACAG
* * *** * *
16285943 AATTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGTTACAGTAGGATCGATAGCACGTAG
252 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGTAGGATCGACAGCACGCAG
* * * * *
16286008 AGG-GGACCAAGTCGATCCCTGGCTTGCGCATTCTACCTCACCGATCGGTTGAGCGCCCGCACGC
317 -GGAGGACCAGGTCGGTCCC-AGCTTGCGCATTCTACCTCTCCGATCGGCTGAGCGCCCGCACGC
** *
16286072 CCGTTTGATGAGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CTAGA-CGAG
380 CCGTTTCCTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC-AGACCGAG
*
16286135 GGTTGT-GCAAACGGGACCAGTAGCA-CAT--AA
444 GGTTGTGGC-AACGGGACC-G-A-CAGCATGCAG
* * * * * * *
16286165 AGGGGGATCGGGCCGATCCCTAGCTTGCGCATTCTGCCT-TAACGGCCGGCTGAGCGCCTGCACA
1 AGGGGGATCGGGTCGATCCCTAGCTTGCGCATTCTGCCTCT-CCGACCGACTGAGCACCCGCACG
* **
16286229 CTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
65 CCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
16286279 ATACGGAGTT
Statistics
Matches: 894, Mismatches: 139, Indels: 65
0.81 0.13 0.06
Matches are distributed among these distances:
473 21 0.02
474 3 0.00
475 96 0.11
476 732 0.82
477 15 0.02
478 27 0.03
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (473 bp):
AGGGGGATCGGGTCGATCCCTAGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCACCCGCACGC
CCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTGAAG
GTTGTGGCAGCGGACCGGCAGCACGCAGAGGGGGATCGGGCCGATCCCCAGCTTGCGCATTATGC
CTCTTCGGTCGGCTCAGTCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTC
CCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGTAGGATCGACAGCACGCAGGGAGGACCA
GGTCGGTCCCAGCTTGCGCATTCTACCTCTCCGATCGGCTGAGCGCCCGCACGCCCGTTTCCTGG
GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGCAAC
GGGACCGACAGCATGCAG
Found at i:16286302 original size:26 final size:26
Alignment explanation
Indices: 16286251--16286303 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16286241 GTTGGCTTAG
*
16286251 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGACTAA
*
16286277 GCATACGGAGTTCATTCCCA-GACTAA
1 GCATACAGAGTTCATT-CCATGACTAA
16286303 G
1 G
16286304 AGTTTGTGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGACTAA
Found at i:16287627 original size:159 final size:159
Alignment explanation
Indices: 16287036--16288761 Score: 915
Period size: 159 Copynumber: 10.9 Consensus size: 159
16287026 GATCGAACCT
* * * *
16287036 GACCGAGGGTTGCGGTAGCAGGATCGACAACATGCAG-GGGGGACCGGGTCGATCCCCGACTTGC
1 GACCGAGGGTTGTGGTAGCGGGATCGACAGCATGCAGAGGGGGACTGGGTCGATCCCCGACTTGC
* * * * * * *
16287100 ACATTCTACCTCTCC-AGTCGACTGAGCGCCCGTAAGCCTATTTTGTGGGTTGGCTTAGGCATAG
66 GCATTCTGCCTCTCCGA-TCGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAG
* * *
16287164 AGAGTT-AGTCCATGTCTAAGCCCCAGCCG
130 GGAGTTCATTCCATGTCTAAGCCCCAGCCA
* * * *
16287193 GACCGAGGGTTGTGGTAGCGGTATCGACAGCATGCAGAGGGGGACTGGGTCGATCCTCGGCTTGT
1 GACCGAGGGTTGTGGTAGCGGGATCGACAGCATGCAGAGGGGGACTGGGTCGATCCCCGACTTGC
* * * * * * * * *
16287258 GCATTATGCCTCTCC-AGTCGACTCAGCTCCTGAACGCTCATTTCGTGGGTTGACTTAGGCATAT
66 GCATTCTGCCTCTCCGA-TCGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAG
* ** *
16287322 AGAGTTCATTCCCA-GTCTAAG-ATCGGACCA
130 GGAGTTCATT-CCATGTCTAAGCCCCAG-CCA
*** * * * * * * * * *
16287352 GACCGAGGGTTACAGTAGCAGCATCGATAGCACGCTG-GGAGGACCGGGTCGATCCTCAACTTGC
1 GACCGAGGGTTGTGGTAGCGGGATCGACAGCATGCAGAGGGGGACTGGGTCGATCCCCGACTTGC
* * * * * ** *
16287416 GCATTCTACCTCTCCGA-CTGGCTGAGTGTCCACATGCCTGTTTCCTGGGTTGGCTTAGGCATAG
66 GCATTCTGCCTCTCCGATC-GGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAG
*
16287480 GGAGTTCATTCCATGTCTAAGCCCCAGTCA
130 GGAGTTCATTCCATGTCTAAGCCCCAGCCA
* * * * *
16287510 GACCGAGGGTTATGGCAGTGGGATCGACAGCATACAGAGGGGGACTGGGTCGATCCCCAACTTGC
1 GACCGAGGGTTGTGGTAGCGGGATCGACAGCATGCAGAGGGGGACTGGGTCGATCCCCGACTTGC
* * * *
16287575 ACATTCTGCCTCTCCGATCGGTTGAGCGCTCGCATGCCCATTTCGTGGGTTGGCTTAGGCATAGG
66 GCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGG
*
16287640 GAGTTCATTCCATGTCTAAGCCCTAGCCA
131 GAGTTCATTCCATGTCTAAGCCCCAGCCA
** * ** * * * *
16287669 GATTGAGGGTTGTGGTAGCGGGACCGGTAGCAAGTAGAGGGGGA-TCGGGCCAATCCCCTG-CTT
1 GACCGAGGGTTGTGGTAGCGGGATCGACAGCATGCAGAGGGGGACT-GGGTCGATCCCC-GACTT
* * * * * * * ** * * * *
16287732 ACGCATTATGCCTCTTCG-GCTAGCTCAGTGCCCGCACGTTCATTTCATTGGTTGACTTACGCAT
64 GCGCATTCTGCCTCTCCGATC-GGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCAT
* ** * *
16287796 ACGGAGTTCATTCCCA-GTCTAAGATCAAACCA
128 AGGGAGTTCATT-CCATGTCTAAGCCCCAGCCA
* ** ** * * * * *
16287828 GATCGAGGGTTACGGTAGTAGGATCGATAGCACGCAG-GGAGGA-TCGGGTC-AGTCTCTGACTT
1 GACCGAGGGTTGTGGTAGCGGGATCGACAGCATGCAGAGGGGGACT-GGGTCGA-TCCCCGACTT
* * * * * * * *
16287890 ACGCATTCTGCCTCTCCGACCAGCTGAGTGCCTGCACGCCCGTTTCCTAGGTTGGCTTAGGCATA
64 GCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATA
* ** *
16287955 GGGAGTTCATTACATGTCTAAGCCTTAGTC-
129 GGGAGTTCATTCCATGTCTAAGCCCCAGCCA
* ** * * * * *
16287985 GAACCGAGGGTTGTGGCAAAGGGATCGGCAGCATGTAGAGGGTGACTGGTTTGATCCCCGACTTG
1 G-ACCGAGGGTTGTGGTAGCGGGATCGACAGCATGCAGAGGGGGACTGGGTCGATCCCCGACTTG
* * * * * *
16288050 CTCATTCTGCCTCTCC-AGCCAGCTGAGCACCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATA
65 CGCATTCTGCCTCTCCGA-TCGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATA
* * *
16288114 GGGAGTTCATTTCATGTCTAAGCCCCAGTCG
129 GGGAGTTCATTCCATGTCTAAGCCCCAGCCA
* * * * * *
16288145 GACCGATGGTTGTGGCAGC-----CG---G-A--CCGAGGGGGA-TCGAGCCGAT-CCCTAGCTT
1 GACCGAGGGTTGTGGTAGCGGGATCGACAGCATGCAGAGGGGGACT-GGGTCGATCCCCGA-CTT
* * * * ** * * ** * * * * * *
16288197 GCGTATTATGCCTTTTCGGCCAGCTCAATGCTCGAACGCTCGTTTCGTGGGTTGACTTAGGTATA
64 GCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATA
* * ** * *
16288262 CGAAGTTCATTCCCA-GTCTAAG-ATCGGACCG
129 GGGAGTTCATT-CCATGTCTAAGCCCCAG-CCA
** ** ** * * * * * * *
16288293 GACCGAGGGTTACGACAGTAGGATCGACAGTACGTAG-GAGGGACCGAGTCGAT-CCCTAGCTTG
1 GACCGAGGGTTGTGGTAGCGGGATCGACAGCATGCAGAGGGGGACTGGGTCGATCCCCGA-CTTG
* ** ** * ** **
16288356 CGCATTCTACCTCGACGGCCAGCTGAGCGCCCGCACGCCCATTTTATGGGTTGGCTTAGGTGTAG
65 CGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAG
*
16288421 GGAGTTCATTCCTTGTCTAAGCCCCAGCC-
130 GGAGTTCATTCCATGTCTAAGCCCCAGCCA
* * * * * **
16288450 GAATCGAGGGTTGTGGCAGCGGGATCGGGCAACATGCAGAGGGGGA-TCGGGTCGATCCCTGGGT
1 G-ACCGAGGGTTGTGGTAGCGGGATC-GACAGCATGCAGAGGGGGACT-GGGTCGATCCCCGACT
* * * * * * *** * *
16288514 TGCGCATTATGCCTCTTCGA-CTGGCTCAACGTCCGTACGCTTGTTTCGTGGGTTGACATAGGCA
63 TGCGCATTCTGCCTCTCCGATC-GGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCA
* ** *
16288578 TATGGAGTTCATTCCCA-GTCTAAGATCGAGCCA
127 TAGGGAGTTCATT-CCATGTCTAAGCCCCAGCCA
** ** ** * * * * * * * *
16288611 GACTAAGGGTTACGACAGCAGGATCGATAGCACGTAG-GGCGTGAAC-AGGTCGATCCCAGGCTT
1 GACCGAGGGTTGTGGTAGCGGGATCGACAGCATGCAGAGG-G-GGACTGGGTCGATCCCCGACTT
* * * * *
16288674 GCGCATTCTGCCTCTTCGA-CTGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCAT
64 GCGCATTCTGCCTCTCCGATC-GGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCAT
* * *
16288738 ACGAAGTTCATTACATGTCTAAGC
128 AGGGAGTTCATTCCATGTCTAAGC
16288762 ATACGGAGTT
Statistics
Matches: 1192, Mismatches: 322, Indels: 108
0.73 0.20 0.07
Matches are distributed among these distances:
147 7 0.01
148 94 0.08
149 2 0.00
150 1 0.00
151 1 0.00
153 2 0.00
154 2 0.00
156 1 0.00
157 46 0.04
158 416 0.35
159 506 0.42
160 109 0.09
161 5 0.00
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.25
Consensus pattern (159 bp):
GACCGAGGGTTGTGGTAGCGGGATCGACAGCATGCAGAGGGGGACTGGGTCGATCCCCGACTTGC
GCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGG
GAGTTCATTCCATGTCTAAGCCCCAGCCA
Found at i:16287634 original size:317 final size:316
Alignment explanation
Indices: 16287000--16287659 Score: 806
Period size: 316 Copynumber: 2.1 Consensus size: 316
16286990 CCCAGTCTAA
* * * * *
16287000 GCATATGGAGTTCATTCCCAGTCGAAGATCGAACCTGACCGAGGGTTGCGGTAGCAGGATCGACA
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACAGTAGCAGCATCGACA
* * * *
16287065 ACATGCAGGGGGGACCGGGTCGATCCCCGACTTGCACATTCTACCTCTCCAGTCGACTGAGCGCC
66 ACACGCAGGGAGGACCGGGTCGATCCCCAACTTGCACATTCTACCTCTCCACTCGACTGAGCGCC
** ** *
16287130 CGTAAGCCTATTTTGTGGGTTGGCTTAGGCATAGAGAGTTAGTCCATGTCTAAGCCCCAGCCGGA
131 CACAAGCCTATTTCCTGGGTTGGCTTAGGCATAGAGAGTTAGTCCATGTCTAAGCCCCAGCCAGA
* * * * * ** **
16287195 CCGAGGGTTGTGGTAGCGGTATCGACAGCATGCAGAGGGGGACTGGGTCGATCCTCGGCTTGTGC
196 CCGAGGGTTATGGCAGCGGGATCGACAGCATACAGAGGGGGACTGGGTCGATCCCCAACTTGCAC
* *
16287260 ATTATGCCTCTCCAGTCGACTCAGCTCCTGAACGCTCATTTCGTGGGTTGACTTAG
261 ATTATGCCTCTCCAGTCGACTCAGCGCCTGAACGCCCATTTCGTGGGTTGACTTAG
* * *
16287316 GCATATAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACAGTAGCAGCATCGATA
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACAGTAGCAGCATCGACA
* * * * * * *
16287381 GCACGCTGGGAGGACCGGGTCGATCCTCAACTTGCGCATTCTACCTCTCCGACT-GGCTGAGTGT
66 ACACGCAGGGAGGACCGGGTCGATCCCCAACTTGCACATTCTACCTCTCC-ACTCGACTGAGCGC
* * * * *
16287445 CCACATGCCTGTTTCCTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCA
130 CCACAAGCCTATTTCCTGGGTTGGCTTAGGCATAGAGAGTT-AGTCCATGTCTAAGCCCCAGCCA
*
16287510 GACCGAGGGTTATGGCAGTGGGATCGACAGCATACAGAGGGGGACTGGGTCGATCCCCAACTTGC
194 GACCGAGGGTTATGGCAGCGGGATCGACAGCATACAGAGGGGGACTGGGTCGATCCCCAACTTGC
* ** * * * *
16287575 ACATTCTGCCTCTCC-GATCGGTTGAGCG-CTCGCATGCCCATTTCGTGGGTTGGCTTAG
259 ACATTATGCCTCTCCAG-TCGACTCAGCGCCT-GAACGCCCATTTCGTGGGTTGACTTAG
*
16287633 GCATAGGGAGTTCATT-CCATGTCTAAG
1 GCATATGGAGTTCATTCCCA-GTCTAAG
16287660 CCCTAGCCAG
Statistics
Matches: 289, Mismatches: 50, Indels: 9
0.83 0.14 0.03
Matches are distributed among these distances:
316 147 0.51
317 142 0.49
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (316 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACAGTAGCAGCATCGACA
ACACGCAGGGAGGACCGGGTCGATCCCCAACTTGCACATTCTACCTCTCCACTCGACTGAGCGCC
CACAAGCCTATTTCCTGGGTTGGCTTAGGCATAGAGAGTTAGTCCATGTCTAAGCCCCAGCCAGA
CCGAGGGTTATGGCAGCGGGATCGACAGCATACAGAGGGGGACTGGGTCGATCCCCAACTTGCAC
ATTATGCCTCTCCAGTCGACTCAGCGCCTGAACGCCCATTTCGTGGGTTGACTTAG
Found at i:16287679 original size:317 final size:316
Alignment explanation
Indices: 16287007--16287659 Score: 758
Period size: 317 Copynumber: 2.1 Consensus size: 316
16286997 TAAGCATATG
* * * * * * *
16287007 GAGTTCATTCCCAGTCGAAGATC-GAACCTGACCGAGGGTTGCGGTAGCAGGATCGACAACATGC
1 GAGTTCATTCCCAGTCTAAGACCAG-ACCAGACCGAGGGTTACAGTAGCAGCATCGACAACACGC
* * * **
16287071 AGGGGGGACCGGGTCGATCCCCGACTTGCACATTCTACCTCTCCAGTCGACTGAGCGCCCGTAAG
65 AGGGAGGACCGGGTCGATCCCCAACTTGCACATTCTACCTCTCCACTCGACTGAGCGCCCACAAG
** *
16287136 CCTATTTTGTGGGTTGGCTTAGGCATAGAGAGTTAGTCCATGTCTAAGCCCCAGCCGGACCGAGG
130 CCTATTTCCTGGGTTGGCTTAGGCATAGAGAGTTAGTCCATGTCTAAGCCCCAGCCAGACCGAGG
* * * * * ** **
16287201 GTTGTGGTAGCGGTATCGACAGCATGCAGAGGGGGACTGGGTCGATCCTCGGCTTGTGCATTATG
195 GTTATGGCAGCGGGATCGACAGCATACAGAGGGGGACTGGGTCGATCCCCAACTTGCACATTATG
* * *
16287266 CCTCTCCAGTCGACTCAGCTCCTGAACGCTCATTTCGTGGGTTGACTTAGGCATATA
260 CCTCTCCAGTCGACTCAGCGCCTGAACGCCCATTTCGTGGGTTGACTTAGGCATAGA
* * * * *
16287323 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACAGTAGCAGCATCGATAGCACGCT
1 GAGTTCATTCCCAGTCTAAGACCAGACCAGACCGAGGGTTACAGTAGCAGCATCGACAACACGCA
* * * * * *
16287388 GGGAGGACCGGGTCGATCCTCAACTTGCGCATTCTACCTCTCCGACT-GGCTGAGTGTCCACATG
66 GGGAGGACCGGGTCGATCCCCAACTTGCACATTCTACCTCTCC-ACTCGACTGAGCGCCCACAAG
* * * *
16287452 CCTGTTTCCTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAG
130 CCTATTTCCTGGGTTGGCTTAGGCATAGAGAGTT-AGTCCATGTCTAAGCCCCAGCCAGACCGAG
* *
16287517 GGTTATGGCAGTGGGATCGACAGCATACAGAGGGGGACTGGGTCGATCCCCAACTTGCACATTCT
194 GGTTATGGCAGCGGGATCGACAGCATACAGAGGGGGACTGGGTCGATCCCCAACTTGCACATTAT
** * * * * *
16287582 GCCTCTCC-GATCGGTTGAGCG-CTCGCATGCCCATTTCGTGGGTTGGCTTAGGCATAGG
259 GCCTCTCCAG-TCGACTCAGCGCCT-GAACGCCCATTTCGTGGGTTGACTTAGGCATAGA
16287640 GAGTTCATT-CCATGTCTAAG
1 GAGTTCATTCCCA-GTCTAAG
16287660 CCCTAGCCAG
Statistics
Matches: 283, Mismatches: 48, Indels: 11
0.83 0.14 0.03
Matches are distributed among these distances:
316 140 0.49
317 143 0.51
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (316 bp):
GAGTTCATTCCCAGTCTAAGACCAGACCAGACCGAGGGTTACAGTAGCAGCATCGACAACACGCA
GGGAGGACCGGGTCGATCCCCAACTTGCACATTCTACCTCTCCACTCGACTGAGCGCCCACAAGC
CTATTTCCTGGGTTGGCTTAGGCATAGAGAGTTAGTCCATGTCTAAGCCCCAGCCAGACCGAGGG
TTATGGCAGCGGGATCGACAGCATACAGAGGGGGACTGGGTCGATCCCCAACTTGCACATTATGC
CTCTCCAGTCGACTCAGCGCCTGAACGCCCATTTCGTGGGTTGACTTAGGCATAGA
Found at i:16287964 original size:476 final size:470
Alignment explanation
Indices: 16287037--16288508 Score: 1598
Period size: 476 Copynumber: 3.1 Consensus size: 470
16287027 ATCGAACCTG
* * *
16287037 ACCGAGGGTTGCGGTAGCA-GGATCGACAACATGCAG-GGGGGACCGGGTCGATCCCCGACTTGC
1 ACCGAGGGTTGTGGCAG-AGGGATCGACAACATGCAGAGGGGGACTGGGTCGATCCCCGACTTGC
* * * * * * *
16287100 ACATTCTACCTCTCCAGTCGACTGAGCGCCCGTAAGCCTATTTTGTGGGTTGGCTTAGGCATAGA
65 ACATTCTGCCTCTCCAGTCGGCTGAGCGCCCGCATGCCCATTTCGTGGGTTGGCTTAGGCATAGG
* * * *
16287165 GAGTT-AGTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAGCGGTATCGACAGCATGCA
130 GAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAGCGGGACCG-GAGCA-G-A
* * * * * * * *
16287229 GAGGGGGA-CTGGGTCGATCCTCGGCTTGTGCATTATGCCTCTCCAG-TCGACTCAGCT-CCTGA
192 GAGGGGGATC-GGGCCGATCCCCTGCTTGCGCATTATGCCTCTTCGGCTAG-CTCAG-TGCCCGA
**
16287291 ACGCTCATTTCGTGGGTTGACTTAGGCATATAGAGTTCATTCCCAGTCTAAGATCGGACCAGACC
254 ACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACC
* * * *
16287356 GAGGGTTACAGTAGCAGCATCGATAGCACGCTGGGAGGACCGGGTCGATCCTCAACTTGCGCATT
319 GAGGGTTACGGTAGTAGGATCGATAGCACGCAGGGAGGACCGGGTCGATCCT--ACTTGCGCATT
** * * *
16287421 CTACCTCTCCGACTGGCTGAGTGTCCACATGCCTGTTTCCTGGGTTGGCTTAGGCATAGGGAGTT
382 CTACCTCTCCGACCAGCTGAGTG-CCGCACGCCCGTTTCCTGGGTTGGCTTAGGCATAGGGAGTT
16287486 CATTCCATGTCTAAGCCCCAGTC-A
446 CATTCCATGTCTAAGCCCCAGTCGA
* * * * *
16287510 GACCGAGGGTTATGGCAGTGGGATCGACAGCATACAGAGGGGGACTGGGTCGATCCCCAACTTGC
1 -ACCGAGGGTTGTGGCAGAGGGATCGACAACATGCAGAGGGGGACTGGGTCGATCCCCGACTTGC
* *
16287575 ACATTCTGCCTCTCC-GATCGGTTGAGCGCTCGCATGCCCATTTCGTGGGTTGGCTTAGGCATAG
65 ACATTCTGCCTCTCCAG-TCGGCTGAGCGCCCGCATGCCCATTTCGTGGGTTGGCTTAGGCATAG
* * **
16287639 GGAGTTCATTCCATGTCTAAGCCCTAGCCAGATTGAGGGTTGTGGTAGCGGGACCGGTAGCAAGT
129 GGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAGCGGGACCGG-AGC-AG-
* * *
16287704 AGAGGGGGATCGGGCCAATCCCCTGCTTACGCATTATGCCTCTTCGGCTAGCTCAGTGCCCGCAC
191 AGAGGGGGATCGGGCCGATCCCCTGCTTGCGCATTATGCCTCTTCGGCTAGCTCAGTGCCCGAAC
* * * * ** *
16287769 GTTCATTTCATTGGTTGACTTACGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGATCGA
256 GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGA
* *
16287834 GGGTTACGGTAGTAGGATCGATAGCACGCAGGGAGGATCGGGTC-AGTCTCTGACTTACGCATTC
321 GGGTTACGGTAGTAGGATCGATAGCACGCAGGGAGGACCGGGTCGA-TC-CT-ACTTGCGCATTC
* *
16287898 TGCCTCTCCGACCAGCTGAGTGCCTGCACGCCCGTTTCCTAGGTTGGCTTAGGCATAGGGAGTTC
383 TACCTCTCCGACCAGCTGAGTGCC-GCACGCCCGTTTCCTGGGTTGGCTTAGGCATAGGGAGTTC
* **
16287963 ATTACATGTCTAAGCCTTAGTCGA
447 ATTCCATGTCTAAGCCCCAGTCGA
* * * * * * * *
16287987 ACCGAGGGTTGTGGCAAAGGGATCGGCAGCATGTAGAGGGTGACTGGTTTGATCCCCGACTTGCT
1 ACCGAGGGTTGTGGCAGAGGGATCGACAACATGCAGAGGGGGACTGGGTCGATCCCCGACTTGCA
* * * *
16288052 CATTCTGCCTCTCCAGCCAGCTGAGCACCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGG
66 CATTCTGCCTCTCCAGTCGGCTGAGCGCCCGCATGCCCATTTCGTGGGTTGGCTTAGGCATAGGG
* * * * *
16288117 AGTTCATTTCATGTCTAAGCCCCAGTCGGACCGATGGTTGT-G--GC-AG-CCGGA-C--CGAGG
131 AGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAGCGGGACCGGAGCAGAGAGG
* * * * * *
16288174 GGGATCGAGCCGAT-CCCTAGCTTGCGTATTATGCCTTTTCGGCCAGCTCAATGCTCGAACGCTC
196 GGGATCGGGCCGATCCCCT-GCTTGCGCATTATGCCTCTTCGGCTAGCTCAGTGCCCGAACGCTC
* * * *
16288238 GTTTCGTGGGTTGACTTAGGTATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
260 ATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGT
** * * * *
16288303 TACGACAGTAGGATCGACAGTACGTA-GGAGGGACCGAGTCGATCCCTAGCTTGCGCATTCTACC
325 TACGGTAGTAGGATCGATAGCACGCAGGGA-GGACCGGGTCGAT-CCTA-CTTGCGCATTCTACC
** * * * ** **
16288367 TCGACGGCCAGCTGAGCGCCCGCACGCCCATTTTATGGGTTGGCTTAGGTGTAGGGAGTTCATTC
387 TCTCCGACCAGCTGAGTG-CCGCACGCCCGTTTCCTGGGTTGGCTTAGGCATAGGGAGTTCATTC
* *
16288432 CTTGTCTAAGCCCCAGCCGA
451 CATGTCTAAGCCCCAGTCGA
* * *
16288452 ATCGAGGGTTGTGGCAGCGGGATCGGGCAACATGCAGAGGGGGA-TCGGGTCGATCCC
1 ACCGAGGGTTGTGGCAGAGGGATC-GACAACATGCAGAGGGGGACT-GGGTCGATCCC
16288509 TGGGTTGCGC
Statistics
Matches: 835, Mismatches: 141, Indels: 52
0.81 0.14 0.05
Matches are distributed among these distances:
464 8 0.01
465 242 0.29
466 29 0.03
469 1 0.00
470 1 0.00
471 4 0.00
472 1 0.00
473 2 0.00
474 30 0.04
475 89 0.11
476 420 0.50
477 8 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (470 bp):
ACCGAGGGTTGTGGCAGAGGGATCGACAACATGCAGAGGGGGACTGGGTCGATCCCCGACTTGCA
CATTCTGCCTCTCCAGTCGGCTGAGCGCCCGCATGCCCATTTCGTGGGTTGGCTTAGGCATAGGG
AGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGTAGCGGGACCGGAGCAGAGAGG
GGGATCGGGCCGATCCCCTGCTTGCGCATTATGCCTCTTCGGCTAGCTCAGTGCCCGAACGCTCA
TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT
ACGGTAGTAGGATCGATAGCACGCAGGGAGGACCGGGTCGATCCTACTTGCGCATTCTACCTCTC
CGACCAGCTGAGTGCCGCACGCCCGTTTCCTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
CTAAGCCCCAGTCGA
Found at i:16288121 original size:317 final size:318
Alignment explanation
Indices: 16287448--16288135 Score: 690
Period size: 317 Copynumber: 2.2 Consensus size: 318
16287438 TGAGTGTCCA
* * * * **
16287448 CATGCCTGTTTCCTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGAC
1 CATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGACCAAACCAGAC
* * * * *
16287513 CGAGGGTTATGGCAGTGGGATCGACAGCATACAGAGGGGGACTGGGTCGATCCCCAACTTGCACA
66 CGAGGGTTACGGCAGTAGGATCGACAGCACACAGAGGAGGACTGGGTCGATCCCCAACTTACACA
* * * * * *
16287578 TTCTGCCTCTCCGATCGGTTGAGCGCTCGCATGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAG
131 TTCTGCCTCTCCGACCAGCTGAGCGCTCGCACGCCCATTTCCTAGGTTGGCTTAGGCATAGGGAG
* ** * ** *
16287643 TTCATTCCATGTCTAAGCCCTAGCCAGATTGAGGGTTGTGGTAGCGGGACCGGTAGCAAGTAGAG
196 TTCATTACATGTCTAAGCCCTAGCCAGACCGAGGGTTGTGGCAAAGGGACCGGCAGCAAGTAGAG
* * * **
16287708 GGGGATCGGGCCAATCCCCTGCTTACGCATTATGCCTCTTCGGCTAGCTCAGTGCCCG
261 GGGGATCGGGCCAATCCCCTGCTTACGCATTATGCCTCTCCAGCCAGCTCAGCACCCG
* ** * * * * * *
16287766 CACGTTCATTTCATTGGTTGACTTACGCATACGGAGTTCATTCCCA-GTCTAAGATCAAACCAGA
1 CATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGACCAAACCAGA
* * * * * **
16287830 TCGAGGGTTACGGTAGTAGGATCGATAGCACGCAG-GGAGGA-TCGGGTC-AGTCTCTGACTTAC
65 CCGAGGGTTACGGCAGTAGGATCGACAGCACACAGAGGAGGACT-GGGTCGA-TCCCCAACTTAC
* * *
16287892 GCATTCTGCCTCTCCGACCAGCTGAGTGC-CTGCACGCCCGTTTCCTAGGTTGGCTTAGGCATAG
128 ACATTCTGCCTCTCCGACCAGCTGAGCGCTC-GCACGCCCATTTCCTAGGTTGGCTTAGGCATAG
* * * *
16287956 GGAGTTCATTACATGTCTAAGCCTTAGTC-GAACCGAGGGTTGTGGCAAAGGGATCGGCAGCATG
192 GGAGTTCATTACATGTCTAAGCCCTAGCCAG-ACCGAGGGTTGTGGCAAAGGGACCGGCAGCAAG
* **** * * * *
16288020 TAGAGGGTGA-CTGGTTTGATCCCC-GACTTGCTCATTCTGCCTCTCCAGCCAGCTGAGCACCCG
256 TAGAGGGGGATC-GGGCCAATCCCCTG-CTTACGCATTATGCCTCTCCAGCCAGCTCAGCACCCG
* *
16288083 CATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTTCATGTCTAAG
1 CATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
16288136 CCCCAGTCGG
Statistics
Matches: 291, Mismatches: 71, Indels: 17
0.77 0.19 0.04
Matches are distributed among these distances:
316 8 0.03
317 207 0.71
318 73 0.25
319 3 0.01
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.26
Consensus pattern (318 bp):
CATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGACCAAACCAGAC
CGAGGGTTACGGCAGTAGGATCGACAGCACACAGAGGAGGACTGGGTCGATCCCCAACTTACACA
TTCTGCCTCTCCGACCAGCTGAGCGCTCGCACGCCCATTTCCTAGGTTGGCTTAGGCATAGGGAG
TTCATTACATGTCTAAGCCCTAGCCAGACCGAGGGTTGTGGCAAAGGGACCGGCAGCAAGTAGAG
GGGGATCGGGCCAATCCCCTGCTTACGCATTATGCCTCTCCAGCCAGCTCAGCACCCG
Found at i:16289131 original size:26 final size:26
Alignment explanation
Indices: 16289101--16289153 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16289091 ATTGACTTAG
16289101 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
16289127 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16289153 G
1 G
16289154 ATTAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16289172 original size:367 final size:355
Alignment explanation
Indices: 16288662--16289344 Score: 814
Period size: 367 Copynumber: 1.9 Consensus size: 355
16288652 TGAACAGGTC
* * * * * * *
16288662 GATCCCAGGCTTGCGCATTCTGCCTCTTCGACTGGCTGAGCACCCGCACGCTCGTTTCATGGGTT
1 GATCCCAGGCTTGCGCATTATGCCCCTCCAACCGGCTGAGCACCCGCACGCTCATTTCATGGATT
* * *
16288727 GGCTTAGGCATACGAAGTTCATTACATGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAA
66 GACTTAGGCATACGAAGTTCATCACATGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAA
**
16288792 ACCAGGTCGAGGGTTGCAACAGCAAGACCAACAGCAAGATCGGCAGCATGCAAGGGGGACCGAGT
131 ACCAGACCGAGGGTTGCAACAGCAAG---AACAGC----T--GCA-C--GCAAGGGGGACCGAGT
* * * * *
16288857 CGATCCTCGGCTTACGAATTCTGCCTCTCCGACCGAATGACCGCCCGTACGCTCGTTTCATGGGT
184 CGATCCCCGACTTACGAATTCTGCCTCTCCGACCGAATGACCGCCCGCAAGCCCGTTTCATGGGT
* * *
16288922 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAG-TCGGACTAAGGGTTGTGGCAGCA
249 TAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCT-AGACTAAGGGTTGTGACAGCA
16288986 GGATTGGCAGTGGGATTGGCAGTACGTAGAGGGGGATCGGGCT
313 GGATTGGCAGTGGGATTGGCAGTACGTAGAGGGGGATCGGGCT
* * *
16289029 GATCCCCGGCTTGCGCATTATGCCCCTCCAACCGGCTGAGCGCCCGCATGCTCATTTCATGGATT
1 GATCCCAGGCTTGCGCATTATGCCCCTCCAACCGGCTGAGCACCCGCACGCTCATTTCATGGATT
* * * *
16289094 GACTTAGGCATAC-AGAGTTCATCCCCA-GTCTAAGCATACAGAGTTCATTCCTAGTCTAAGATT
66 GACTTAGGCATACGA-AGTTCAT-CACATGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATC
* * * * * *
16289157 AGACCAGACCGAGGGTTGCGACAGCAAGATCAGCTGCACGCAGGGGGGATCGGGTCGATCCCCGA
129 AAACCAGACCGAGGGTTGCAACAGCAAGAACAGCTGCACGCAAGGGGGACCGAGTCGATCCCCGA
* * ** ** * *
16289222 CTTGCGCATTCTGCCTCTCCGATTGGTTGAGCGCCCGCAAGCCCGTTTCGTGGGTTAGCTTAGGC
194 CTTACGAATTCTGCCTCTCCGACCGAATGACCGCCCGCAAGCCCGTTTCATGGGTTAGCTTAGGC
* * *
16289287 ATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTAGACTGAGGGTTGTGACAGCGGGAT
259 ATACGGAGTTCATTCCATGTCTAAGCCCCAGCTAGACTAAGGGTTGTGACAGCAGGAT
16289345 CGATAGCACG
Statistics
Matches: 269, Mismatches: 44, Indels: 18
0.81 0.13 0.05
Matches are distributed among these distances:
355 125 0.46
356 1 0.00
357 1 0.00
358 3 0.01
360 1 0.00
364 5 0.02
366 1 0.00
367 130 0.48
368 2 0.01
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (355 bp):
GATCCCAGGCTTGCGCATTATGCCCCTCCAACCGGCTGAGCACCCGCACGCTCATTTCATGGATT
GACTTAGGCATACGAAGTTCATCACATGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAA
ACCAGACCGAGGGTTGCAACAGCAAGAACAGCTGCACGCAAGGGGGACCGAGTCGATCCCCGACT
TACGAATTCTGCCTCTCCGACCGAATGACCGCCCGCAAGCCCGTTTCATGGGTTAGCTTAGGCAT
ACGGAGTTCATTCCATGTCTAAGCCCCAGCTAGACTAAGGGTTGTGACAGCAGGATTGGCAGTGG
GATTGGCAGTACGTAGAGGGGGATCGGGCT
Found at i:16289448 original size:159 final size:159
Alignment explanation
Indices: 16289127--16289630 Score: 468
Period size: 158 Copynumber: 3.2 Consensus size: 159
16289117 CCCAGTCTAA
* ** * * * * *
16289127 GCATACAGAGTTCATTCC-TAGTCTAAG-ATTAGACCAGACCGAGGGTTGCGACAGCAAGATCAG
1 GCATACGGAGTTCATTCCAT-GTCTAAGCACCAGACCAGATCAAGGGTTGTGACAACAAAATCA-
* * * * * * * *
16289190 CT-GCACGCAGGGGGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGATTGGTTGAGC
64 ATAGCACGTAGGGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGT
* *
16289254 GCCCGCAAGCCCGTTTCGTGGGTT-AGCTTAG
129 GCCCGCACGCTCGTTTCGTGGGTTGA-CTTAG
* * * * * *** *
16289285 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CTAGA-CTGAGGGTTGTGACAGCGGGATCGA
1 GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGATC-AAGGGTTGTGACAACAAAATCAA
* * * * *
16289348 TAGCACGTAGAGGGGGATCGAGCCAATCCCCGGCTTGCGCATTATGCCTCTTCGGCTGGCTCAGT
65 TAGCACGTAG-GGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGT
* * *
16289413 GCTCGCACGCTCGTTTCGTTGGTTGACTTAT
129 GCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * *
16289444 GCATACGAAGTTCATTCCCA-GTCTAAG-ATCGGACCGGATCAAGGGTTGTGACAACAAAATCAA
1 GCATACGGAGTTCATT-CCATGTCTAAGCACCAGACCAGATCAAGGGTTGTGACAACAAAATCAA
* * * * * *
16289507 TAGCACGTAGGGGGGA-CCAGGCTGAGCTCCGGCTTGCGCATTCTCCCTCTCCGACCGGCTGAGT
65 TAGCACGTAGGGGGGATCGA-GCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGT
*
16289571 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
129 GCCCGCACGCTCGTTTCGTGGGTTGACTTAG
16289602 GCATACGGAGTTCATTCCATGTCTAAGCA
1 GCATACGGAGTTCATTCCATGTCTAAGCA
16289631 TACGGAGTTC
Statistics
Matches: 277, Mismatches: 57, Indels: 23
0.78 0.16 0.06
Matches are distributed among these distances:
157 7 0.03
158 143 0.52
159 122 0.44
160 5 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGCACCAGACCAGATCAAGGGTTGTGACAACAAAATCAAT
AGCACGTAGGGGGGATCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACTGGCTGAGTGC
CCGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:16289638 original size:26 final size:26
Alignment explanation
Indices: 16289602--16289680 Score: 133
Period size: 26 Copynumber: 3.0 Consensus size: 26
16289592 GTTGGCTTAG
16289602 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
16289628 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
16289654 GCACACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
16289680 G
1 G
16289681 ATTTTGAGCC
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
26 48 0.94
27 3 0.06
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:16290411 original size:26 final size:26
Alignment explanation
Indices: 16290361--16290413 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16290351 GTTGACTTAG
*
16290361 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAATCTAA
16290387 GCATACGGAGTTCATTCCC-AATCTAA
1 GCATACGGAGTTCA-TCCCTAATCTAA
16290413 G
1 G
16290414 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAATCTAA
Found at i:16290861 original size:158 final size:158
Alignment explanation
Indices: 16290482--16290888 Score: 440
Period size: 159 Copynumber: 2.6 Consensus size: 158
16290472 CGATCCCCAG
* ** * * *
16290482 CTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCATGCCCTTTTCGTGGGTTGGCTTAAGC
1 CTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCGCCCGCACACTCATTTCGTGGGTT-GCTTAGGC
** * * * * *
16290547 ATTGGGAGTTCATTCTATGTCTAAGCCCCAACCGGACCAAGGGTTGTGGCAGCGGGACCGATAGC
65 ATACGGAGTTCATTCCATGTCTAAGACCCAACCAGACCAAGGGTTGCGGCAGCAGGACCGATAGC
*
16290612 ACGCAGAGGGGGATCGGGCTGATCCCTGG
130 ACGCAGAGGGGGATCGGGCTGATCCCTGA
* * * * * * *
16290641 CTCGCGCATTATGCCTCTTCAACCGGCTCAGTGCCCGTACACTCATTTCGTGGGTTGACTTAGGC
1 CTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCGCCCGCACACTCATTTCGTGGGTTG-CTTAGGC
**** * * * *
16290706 ATACGGAGTTCATTCCCA-GTCTAAGATTGGACCAGATCGAGGGTTGCGGCAGTAGGATCGATAG
65 ATACGGAGTTCATT-CCATGTCTAAGACCCAACCAGACCAAGGGTTGCGGCAGCAGGACCGATAG
*
16290770 CACGCAG-GGGGGATCGGGTTGATCCCTGA
129 CACGCAGAGGGGGATCGGGCTGATCCCTGA
* ** *
16290799 CTTGCGCATTCTACCTCTCCAGTTGGCTGAGCGCCCGCACACTCGTTTCGTGGGTTAGCTTAGGC
1 CTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCGCCCGCACACTCATTTCGTGGGTT-GCTTAGGC
* *
16290864 GTACGGAGTTCATGCCATGTCTAAG
65 ATACGGAGTTCATTCCATGTCTAAG
16290889 CATACAGAAT
Statistics
Matches: 201, Mismatches: 43, Indels: 9
0.79 0.17 0.04
Matches are distributed among these distances:
157 3 0.01
158 92 0.46
159 104 0.52
160 2 0.01
ACGTcount: A:0.17, C:0.28, G:0.30, T:0.25
Consensus pattern (158 bp):
CTTGCGCATTCTGCCTCTCCAGCCGGCTGAGCGCCCGCACACTCATTTCGTGGGTTGCTTAGGCA
TACGGAGTTCATTCCATGTCTAAGACCCAACCAGACCAAGGGTTGCGGCAGCAGGACCGATAGCA
CGCAGAGGGGGATCGGGCTGATCCCTGA
Found at i:16291381 original size:26 final size:26
Alignment explanation
Indices: 16291345--16291397 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16291335 GTTAGCTTAG
16291345 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16291371 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16291397 G
1 G
16291398 ATTTCGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16297704 original size:26 final size:26
Alignment explanation
Indices: 16297675--16297727 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16297665 GTTGACTTAG
*
16297675 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCAAGTCTAA
*
16297701 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATCCCAAGTCTAA
16297727 G
1 G
16297728 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCAAGTCTAA
Found at i:16298033 original size:159 final size:156
Alignment explanation
Indices: 16297701--16298367 Score: 465
Period size: 159 Copynumber: 4.1 Consensus size: 156
16297691 CCCAGTCTAA
* ** * * * * *
16297701 GCATACGGAGTTCATTCCAAGTCTAAG-ATCGGATCGGACCGAGGGTTGCGACAGCAGGATCAAT
1 GCATACGGAGTTCATT-CATGTCTAAGCCCCAG-TCGGACCAAGGGTTGCGGCAGCAGGATCGAC
* * * * **
16297765 AGCACGTAGGGGGGGATCGGGCCGATCCTCGGCTTACGCATTCTGCCTCTCTGGCCGGCTGAGCG
64 AGCACGCA-GGGGGGATCGGGCCGATCCCCGGCTTGCGTATTCTGCCTCTC-GGGTGGCTGAGCG
* * **
16297830 CCCGCACACCCGTTTCATGGGTTGGGTTAG
127 CCCGCACGCTCGTTTCATGGGTTGACTTAG
* * * * *
16297860 GCATAGGGACTTCATTGCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGATCGACA
1 GCATACGGAGTTCATT-CATGTCTAAGCCCCAGTCGGACCAAGGGTTGCGGCAGCAGGATCGACA
* * * * *
16297925 GCACGCAGAGGGGGATTGAGCCGATCCCCGGCTTGCGTATTATGCCTCTTCGGGTGGCTCAACGC
65 GCACGCAG-GGGGGATCGGGCCGATCCCCGGCTTGCGTATTCTGCCTC-TCGGGTGGCTGAGCGC
* *
16297990 CCGCTCGCTTGTTTCATGGGTTGACTTAG
128 CCGCACGCTCGTTTCATGGGTTGACTTAG
* * * * * ** *
16298019 GCATACAGAGTTCATTCCTAGTCTAAGATCCGACCGGACCAGACCAAGGGTTGCACCAGTAGGAT
1 GCATACGGAGTTCATTCAT-GTCTAAG--CC--CCAG-TCGGACCAAGGGTTGCGGCAGCAGGAT
** * * * ** *
16298084 CGACAGCACGCAGGAAGGACCGGGCCGATCCCCAGCTTGCGTATTCTACCTCTCCTGTCGACTGA
60 CGACAGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGTATTCTGCCTCTCGGGT-GGCTGA
*
16298149 GCGCCCGCACGCTGGTTTCATGGGTT-AGCTTAG
124 GCGCCCGCACGCTCGTTTCATGGGTTGA-CTTAG
* * *
16298182 GGATACGGAGTTCATTCCATGTCTAAGCCCCAATCGGACTAAGGGTTGTGGTAGCAGGACCGAGA
1 GCATACGGAGTTCATT-CATGTCTAAGCCCCAGTCGGACCAA-GG--GT--T-GC-GG--C---A
* * * * * * ** * * *
16298247 GCGGGATCGGCAGCACGTAGAGGGGAATCGGGCTGATCCCCGGCTTGCGCATTAGGCATCTCCGA
53 GCAGGATCGACAGCACGCAG-GGGGGATCGGGCCGATCCCCGGCTTGCGTATTCTGCCTCTCGGG
* * *
16298312 TCAGCTGAGCGCCCGTAGGCTCGTTTCATGGGTTGACTTAG
117 T-GGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
*
16298353 GCATACGAAGTTCAT
1 GCATACGGAGTTCAT
16298368 CCCCAGTCTA
Statistics
Matches: 391, Mismatches: 91, Indels: 40
0.75 0.17 0.08
Matches are distributed among these distances:
158 9 0.02
159 146 0.37
160 4 0.01
161 6 0.02
162 5 0.01
163 88 0.23
164 36 0.09
167 1 0.00
170 17 0.04
171 78 0.20
172 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.22
Consensus pattern (156 bp):
GCATACGGAGTTCATTCATGTCTAAGCCCCAGTCGGACCAAGGGTTGCGGCAGCAGGATCGACAG
CACGCAGGGGGGATCGGGCCGATCCCCGGCTTGCGTATTCTGCCTCTCGGGTGGCTGAGCGCCCG
CACGCTCGTTTCATGGGTTGACTTAG
Found at i:16298867 original size:157 final size:158
Alignment explanation
Indices: 16298521--16298871 Score: 372
Period size: 158 Copynumber: 2.2 Consensus size: 158
16298511 CATGCCCATG
* * * * *
16298521 TCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCAGTCGGATCGAGAGTTGT
1 TCGTGGGTTGGCTTAGGCATA-CGAGTTCATTCCCATGTCCAAGCCCAGCCAGATCGAGAGTTGC
** * * *
16298585 GGCAGCCAGACCGGTAGCACGTAGAGGGGGACTGGGTCGATCCCCAGCTTGCGCATTATGCCTCT
65 GGCAGCCAGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCT
* * *
16298650 TCCGCCTGCGCAGCACCCGCACGCTCGTT
130 TCCGCCAGCGCAGCACCCGCACCCTCATT
* * * *
16298679 TCGTGGGTTGACTTATGCATACGAAGTTCATTCCCA-GTCCAAGCTCAGACCAGATCGAGGGTTG
1 TCGTGGGTTGGCTTAGGCATACG-AGTTCATTCCCATGTCCAAGCCCAG-CCAGATCGAGAGTTG
* * * * * * *
16298743 CGGCAG-TAGGATCGACAGCATGCAG-GGGGGACCGGGCCGATCCTCGGCTTGTGCATTCTGCCT
64 CGGCAGCCA-GACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCT
* *
16298806 C-TCCGGCAGCTG-AGCACCCGTACCCTCATT
128 CTTCCGCCAGC-GCAGCACCCGCACCCTCATT
16298836 TCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCCA
1 TCGTGGGTTGGCTTAGGCATAC-GAGTTCATTCCCA
16298872 CTCTAAGATT
Statistics
Matches: 159, Mismatches: 28, Indels: 13
0.80 0.14 0.06
Matches are distributed among these distances:
157 55 0.35
158 73 0.46
159 31 0.19
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
TCGTGGGTTGGCTTAGGCATACGAGTTCATTCCCATGTCCAAGCCCAGCCAGATCGAGAGTTGCG
GCAGCCAGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTT
CCGCCAGCGCAGCACCCGCACCCTCATT
Found at i:16299591 original size:26 final size:26
Alignment explanation
Indices: 16299561--16299613 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16299551 GTTGACTTAG
16299561 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16299587 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16299613 G
1 G
16299614 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16300091 original size:26 final size:26
Alignment explanation
Indices: 16300062--16300114 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16300052 GGTGGCTCAG
*
16300062 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
16300088 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16300114 G
1 G
16300115 ATCGGATCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16301000 original size:26 final size:26
Alignment explanation
Indices: 16300971--16301023 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16300961 GTTGGCTTAG
16300971 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
16300997 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16301023 G
1 G
16301024 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16302234 original size:158 final size:155
Alignment explanation
Indices: 16301735--16302236 Score: 442
Period size: 158 Copynumber: 3.2 Consensus size: 155
16301725 CCCAGTCTAA
* * * * * ** *
16301735 GCATACGAAGTTTATTCCCAGTCTAAGATGAGACTGGACCGAGGGTTGCAGCAGCAGGATCGATA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGATCGACA
* * * *
16301800 GCATGCAGGGGGGACCGAGCCGATCCC-CAGCTTGCGT-ATTCTGCTTCTCTGGCCTGCTGAGCG
65 GCATGCA-GGGGGACCGAGCCGATCCCTGA-CTTGC-TCATTCTGCCTCTCCGACC-GCTGAGCG
* *
16301863 CCCGTACAC-CGGTTTCATGGGTTGGCTTAG
126 CCCGCACACTC-GTTTCGTGGGTTGGCTTAG
* ** * * * *
16301893 GCATA-GTGAGTTCCTTCCACGTCTAAGCCCCA-ACCGGA-TCAAGGGTTGTGGCAACGGGACCG
1 GCATACG-GAGTTCATTCCA-GTCTAAG-ATCAGACCGGACT-GAGGGTTGTGGCAGCAGGATCG
** * * * * * * * *
16301955 ACAGCACGTAAAGGGGGACC-AGGCTGATCCCTGGCTTGCGCATTATGCCTTCTCGGTCAGCTCA
62 ACAGCA--TGCAGGGGGACCGA-GCCGATCCCTGACTTGCTCATTCTGCC-TCTCCGACCGCTGA
* * * *
16302019 GTGCCCGCACGCTCGTTTCGTGGGTTGACTTAT
123 GCGCCCGCACACTCGTTTCGTGGGTTGGCTTAG
* *
16302052 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTATGGCAGCAGGATCGACA
1 GCATACGGAGTTCATT-CCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGATCGACA
*
16302117 GCATGCAGGAAGGACCGAGCCGATCCCTGACTTGCTCATTCTGCCTCTCCGACCGACTGAGCGCC
65 GCATGCAGG-GGGACCGAGCCGATCCCTGACTTGCTCATTCTGCCTCTCCGACCG-CTGAGCGCC
16302182 CGCACACTCGTTTCGTGGGTTGGCTTAG
128 CGCACACTCGTTTCGTGGGTTGGCTTAG
*
16302210 GCATACGGAGTTCATTCAATGTCTAAG
1 GCATACGGAGTTCATTCCA-GTCTAAG
16302237 CGTATGGAGT
Statistics
Matches: 266, Mismatches: 59, Indels: 38
0.73 0.16 0.10
Matches are distributed among these distances:
157 17 0.06
158 129 0.48
159 107 0.40
160 13 0.05
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGATCGACAG
CATGCAGGGGGACCGAGCCGATCCCTGACTTGCTCATTCTGCCTCTCCGACCGCTGAGCGCCCGC
ACACTCGTTTCGTGGGTTGGCTTAG
Found at i:16302977 original size:26 final size:26
Alignment explanation
Indices: 16302941--16302993 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16302931 GTTGACTTAG
*
16302941 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
16302967 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16302993 G
1 G
16302994 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16303277 original size:159 final size:158
Alignment explanation
Indices: 16303019--16303468 Score: 415
Period size: 159 Copynumber: 2.8 Consensus size: 158
16303009 GGGTTGCGAC
* * * *
16303019 AGCAGGATCGACAGCACGCAGGGTGGACCGGGCCGATCCCCGACTTACACATTCTGCCTCTCTAG
1 AGCAGGATCGATAGCACGCAGGGGGGACCGGGCCGATCCCCGACTTACACATTATGCCTCTCGAG
* * *
16303084 CCGGCTAAGCACCCGCACGCCCATTTCGTTGGTTGGCTTAGGCATAGGGAGTTCATTCCATGACT
66 CCGGCTAAGCACCCGCACGCCCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGACT
* * *
16303149 AAGCCCCAG-CCGGACTGAAGGTTTTGGT
131 AAG-ACCAGACCAGACTGAAGGTTTTGAT
* * * * * *
16303177 AGCGGGATCGGTAGCACGCAGAGGGGGACCGGGCCGGTCCCTGGCTTACACGTTATGCCTCTTCG
1 AGCAGGATCGATAGCACGCAG-GGGGGACCGGGCCGATCCCCGACTTACACATTATGCCTC-TCG
* * * * * * * *
16303242 A-TCGGCTCAGCGCCCGTATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCTGG
64 AGCCGGCTAAGCACCCGCACGCCCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGA
* * * *
16303306 CTAAGATCGGATCAGACTGAGGGTTTTGAT
129 CTAAGACCAGACCAGACTGAAGGTTTTGAT
* * * * * * * *
16303336 AGCAGGATCGATAGCACGCAGGGGGGATCGTGTCGATCCCTGACTTGCGCATTCTACCTCTCCG-
1 AGCAGGATCGATAGCACGCAGGGGGGACCGGGCCGATCCCCGACTTACACATTATGCCTCT-CGA
* * * * * * *
16303400 GTCGACTGAA-CACCCGCACGCTCATTTCATGGGTTG-GTTCAGGCATACGAAGTTCATTCAATG
65 GCCGGCT-AAGCACCCGCACGCCCATTTCGTGGGTTGACTT-AGGCATACGGAGTTCATTCCATG
*
16303463 TCTAAG
128 ACTAAG
16303469 CATACAAAGT
Statistics
Matches: 234, Mismatches: 51, Indels: 14
0.78 0.17 0.05
Matches are distributed among these distances:
157 3 0.01
158 103 0.44
159 125 0.53
160 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.24
Consensus pattern (158 bp):
AGCAGGATCGATAGCACGCAGGGGGGACCGGGCCGATCCCCGACTTACACATTATGCCTCTCGAG
CCGGCTAAGCACCCGCACGCCCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGACT
AAGACCAGACCAGACTGAAGGTTTTGAT
Found at i:16303468 original size:158 final size:156
Alignment explanation
Indices: 16302967--16303468 Score: 486
Period size: 158 Copynumber: 3.2 Consensus size: 156
16302957 CCCAGTCTAA
* * ** * *
16302967 GCATACAGAGTTCATTCCCA-GTCTAAGATCAGATCGGACCGAGGGTTGCGACAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGATCGGACTGAGGGTTTTGATAGCAGGATCGAT
* * ** *
16303031 AGCACGCAGGGTGGACCGGGCCGATCCCCGACTTACACATTCTGCCTCTCTAGCCGGCTAAGCAC
65 AGCACGCAGGGGGGACCGGGCCGATCCCTGACTTACACATTCTGCCTCTCCGGTCGGCTAA-CAC
* *
16303096 CCGCACGCCCATTTCGTTGGTTGGCTTAG
129 CCGCACGCTCATTTCGTGGGTTGG-TTAG
* * ** * * * * *
16303125 GCATAGGGAGTTCATTCCATGACTAAGCCCCAG-CCGGACTGAAGGTTTTGGTAGCGGGATCGGT
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGATCGGACTGAGGGTTTTGATAGCAGGATCGAT
* * * * * * * *
16303189 AGCACGCAGAGGGGGACCGGGCCGGTCCCTGGCTTACACGTTATGCCTCTTCGATCGGCTCAGCG
65 AGCACGCAG-GGGGGACCGGGCCGATCCCTGACTTACACATTCTGCCTCTCCGGTCGGCT-AACA
* * *
16303254 CCCGTATGCTCATTTCGTGGGTTGACTTAG
128 CCCGCACGCTCATTTCGTGGGTTG-GTTAG
* * * *
16303284 GCATACGGAGTTCATTCCCTGGCTAAGATCGGATCAGACTGAGGGTTTTGATAGCAGGATCGATA
1 GCATACGGAGTTCATTCCATGTCTAAGATCAGATCGGACTGAGGGTTTTGATAGCAGGATCGATA
* * * * * * *
16303349 GCACGCAGGGGGGATCGTGTCGATCCCTGACTTGCGCATTCTACCTCTCCGGTCGACTGAACACC
66 GCACGCAGGGGGGACCGGGCCGATCCCTGACTTACACATTCTGCCTCTCCGGTCGGCT-AACACC
*
16303414 CGCACGCTCATTTCATGGGTTGGTTCAG
130 CGCACGCTCATTTCGTGGGTTGGTT-AG
* *
16303442 GCATACGAAGTTCATTCAATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
16303469 CATACAAAGT
Statistics
Matches: 268, Mismatches: 69, Indels: 14
0.76 0.20 0.04
Matches are distributed among these distances:
157 5 0.02
158 137 0.51
159 125 0.47
160 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGATCGGACTGAGGGTTTTGATAGCAGGATCGATA
GCACGCAGGGGGGACCGGGCCGATCCCTGACTTACACATTCTGCCTCTCCGGTCGGCTAACACCC
GCACGCTCATTTCGTGGGTTGGTTAG
Found at i:16304242 original size:159 final size:159
Alignment explanation
Indices: 16304050--16304352 Score: 360
Period size: 159 Copynumber: 1.9 Consensus size: 159
16304040 TAAGCCCCAG
** ** *
16304050 CCAGACCGAGGGTTGTGGCAGCGGGATCGACAGCACGC-AGAGGGGGATCAGGTCGAT-CCTCGG
1 CCAGACCGAGGGTTGCAGCAGCAAGATCAACAGCACGCAAG-GGGGGATCAGGTCGATCCCT-GG
* * * * * * ** *
16304113 CTTGCACATTATGCCTCTTCGGTCGGCTCAGCGCCCGTACGCTCGTTTCGTGGGTT-GACTTATG
64 CTTACACATTATGCCTCTCCGATCGGCTCAGCACCCGCACGCTCGTTCCAAGGGTTAG-CTTAGG
16304177 CATACGGAGTTCATTCCCAGTGTAAGATTGGA
128 CATACGGAGTTCATTCCCAGTGTAAGATTGGA
* * *
16304209 CCAGACCGAGGGTTGCAGCCGCAAGATCAACAGCACGTAAGGGGGGATCGGGTCGATCCCTGGCT
1 CCAGACCGAGGGTTGCAGCAGCAAGATCAACAGCACGCAAGGGGGGATCAGGTCGATCCCTGGCT
* * * * *
16304274 TACGCATTCTGCCTCTCCGATCGGTTGAGTACCCGCACGCTCGTTCCAAGGGTTAGCTTAGGCAT
66 TACACATTATGCCTCTCCGATCGGCTCAGCACCCGCACGCTCGTTCCAAGGGTTAGCTTAGGCAT
16304339 ACGGAGTTCATTCC
131 ACGGAGTTCATTCC
16304353 ATGTCTAAGC
Statistics
Matches: 119, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
159 113 0.95
160 6 0.05
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (159 bp):
CCAGACCGAGGGTTGCAGCAGCAAGATCAACAGCACGCAAGGGGGGATCAGGTCGATCCCTGGCT
TACACATTATGCCTCTCCGATCGGCTCAGCACCCGCACGCTCGTTCCAAGGGTTAGCTTAGGCAT
ACGGAGTTCATTCCCAGTGTAAGATTGGA
Found at i:16304384 original size:26 final size:26
Alignment explanation
Indices: 16304335--16304385 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
16304325 GTTAGCTTAG
* *
16304335 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATCCCATGTCTAA
16304361 GCATACAGAGTTCACTCCCA-GTCTA
1 GCATACAGAGTTCA-TCCCATGTCTA
16304386 GGATTTTGAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCATGTCTAA
Found at i:16305086 original size:26 final size:26
Alignment explanation
Indices: 16305057--16305109 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16305047 GTTGACTTAG
16305057 GCATAAGGAGTTTATCCCCAGTCTAA
1 GCATAAGGAGTTTATCCCCAGTCTAA
* *
16305083 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATAAGGAGTTTATCCCCAGTCTAA
16305109 G
1 G
16305110 ATTAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATAAGGAGTTTATCCCCAGTCTAA
Found at i:16305391 original size:159 final size:158
Alignment explanation
Indices: 16305083--16305586 Score: 470
Period size: 158 Copynumber: 3.2 Consensus size: 158
16305073 CCCAGTCTAA
* ** **
16305083 GCATACGGAGTTTATTCCCA-GTCTAAG-ATTAGACCAGACCGAGGGTTGCAGCAGCAGGATCGA
1 GCATA-GGAGTTCATT-CCATGTCTAAGCACCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGA
* * * *
16305146 TAGCACACAGGGGGGACCAGGCTGATCCCCAGCTTGCGTATTCTG-CTTCTCTGGCCGGCTGAGT
64 CAGCACGCAGGGGGGA-TAGGCTGATCCCCAGCTTGCGCATTCTGCCTTCTCTGGCCGGCTGAGT
* *
16305210 GCCCGTACAC-CGGTTTCATGGGTTGGCTTAG
128 GCCCGCACACTC-GTTTCGTGGGTTGGCTTAG
* * *
16305241 GCATAGTGAGTTCATTCCATGTCTAAGCCCCA-ACCAGACCGAGGGTTGTGGCAACAGGACCGAC
1 GCATAG-GAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * * *
16305305 AGCACGTAGAGGGGGAGTAGGCTGATCCCCAGCTTGCGCATTATGCCTTTTC-GACCGGCTCAAT
65 AGCACGCAG-GGGGGA-TAGGCTGATCCCCAGCTTGCGCATTCTGCCTTCTCTGGCCGGCTGAGT
* * *
16305369 GCCCGCACGCTCGTTTCGTGGGTTGACTTAT
128 GCCCGCACACTCGTTTCGTGGGTTGGCTTAG
* * * * * * *
16305400 GCATACAGAATTCATTCC-TAGTCTAAG-ATCAGACCGGACCAAGGGTTATGGCAGCAGGATCAA
1 GCATA-GGAGTTCATTCCAT-GTCTAAGCACCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGA
* * * ** * *
16305463 CAGCATGCAGGAGGGATCAAGCCCATCCTC-GACTTGCGCATTCTGCC-TCTCTGGCCAGCTGAG
64 CAGCACGCAGGGGGGAT-AGGCTGATCCCCAG-CTTGCGCATTCTGCCTTCTCTGGCCGGCTGAG
* *
16305526 CGCCCACACACTCGTTTCGTGGGTTGGCTTAG
127 TGCCCGCACACTCGTTTCGTGGGTTGGCTTAG
*
16305558 GCATACGGAGTTCATTCCATTTCTAAGCA
1 GCATA-GGAGTTCATTCCATGTCTAAGCA
16305587 TATGGAGTTC
Statistics
Matches: 277, Mismatches: 55, Indels: 27
0.77 0.15 0.08
Matches are distributed among these distances:
157 9 0.03
158 140 0.51
159 122 0.44
160 6 0.02
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (158 bp):
GCATAGGAGTTCATTCCATGTCTAAGCACCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGACA
GCACGCAGGGGGGATAGGCTGATCCCCAGCTTGCGCATTCTGCCTTCTCTGGCCGGCTGAGTGCC
CGCACACTCGTTTCGTGGGTTGGCTTAG
Found at i:16305583 original size:158 final size:159
Alignment explanation
Indices: 16305170--16305586 Score: 418
Period size: 159 Copynumber: 2.6 Consensus size: 159
16305160 GACCAGGCTG
* * * *
16305170 ATCCCCAGCTTGCGTATTCTGCTTCTCTGGCCGGCTGAGTGCCCGTACAC-CGGTTTCATGGGTT
1 ATCCCCAGCTTGCGCATTCTGCCTCTCTGGCCGGCTGAGTGCCCGCACACTC-GTTTCGTGGGTT
* * *
16305234 GGCTTAGGCATA-GTGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGTGGCAACAG
65 GGCTTAGGCATACG-GAGTTCATTCCATGTCTAAGCACCAACCAGACCAAGGGTTATGGCAACAG
* * * * **
16305298 GACCGACAGCACGTAGAGGGGGAGTAGGCTG
129 GACCAACAGCACGCAGAGAGGGAGTAAGCCC
* * * * * *
16305329 ATCCCCAGCTTGCGCATTATGCCT-TTTCGACCGGCTCAATGCCCGCACGCTCGTTTCGTGGGTT
1 ATCCCCAGCTTGCGCATTCTGCCTCTCT-GGCCGGCTGAGTGCCCGCACACTCGTTTCGTGGGTT
* * * * * * *
16305393 GACTTATGCATACAGAATTCATTCC-TAGTCTAAG-ATCAGACCGGACCAAGGGTTATGGCAGCA
65 GGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCACCA-ACCAGACCAAGGGTTATGGCAACA
* *
16305456 GGATCAACAGCATGCAG-GAGGGA-TCAAGCCC
128 GGACCAACAGCACGCAGAGAGGGAGT-AAGCCC
* * * *
16305487 ATCCTC-GACTTGCGCATTCTGCCTCTCTGGCCAGCTGAGCGCCCACACACTCGTTTCGTGGGTT
1 ATCCCCAG-CTTGCGCATTCTGCCTCTCTGGCCGGCTGAGTGCCCGCACACTCGTTTCGTGGGTT
*
16305551 GGCTTAGGCATACGGAGTTCATTCCATTTCTAAGCA
65 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
16305587 TATGGAGTTC
Statistics
Matches: 205, Mismatches: 43, Indels: 20
0.76 0.16 0.07
Matches are distributed among these distances:
157 2 0.01
158 89 0.43
159 113 0.55
160 1 0.00
ACGTcount: A:0.21, C:0.28, G:0.27, T:0.25
Consensus pattern (159 bp):
ATCCCCAGCTTGCGCATTCTGCCTCTCTGGCCGGCTGAGTGCCCGCACACTCGTTTCGTGGGTTG
GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAACCAGACCAAGGGTTATGGCAACAGGA
CCAACAGCACGCAGAGAGGGAGTAAGCCC
Found at i:16305609 original size:26 final size:26
Alignment explanation
Indices: 16305558--16305610 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
16305548 GTTGGCTTAG
**
16305558 GCATACGGAGTTCATTCCATTTCTAA
1 GCATACGGAGTTCATTCCATCACTAA
*
16305584 GCATATGGAGTTCATTCCCA-CACTAA
1 GCATACGGAGTTCATT-CCATCACTAA
16305610 G
1 G
16305611 ATTTTAAGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATCACTAA
Found at i:16306331 original size:26 final size:26
Alignment explanation
Indices: 16306292--16306344 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16306282 GTTGACTTAG
* *
16306292 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAATTCATCCCCAGTCTAA
*
16306318 GCATACAGAATTCATTCCCAGTCTAA
1 GCATACAGAATTCATCCCCAGTCTAA
16306344 G
1 G
16306345 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAATTCATCCCCAGTCTAA
Found at i:16306704 original size:159 final size:159
Alignment explanation
Indices: 16306361--16306819 Score: 402
Period size: 159 Copynumber: 2.9 Consensus size: 159
16306351 TCGGATCGAG
* * * * *
16306361 GGTTGCGACAGCAGGATCGACAGCATGCAGA-GGGGACCGGGCCGATCCCTGACTTACGCATTCT
1 GGTTGTGATAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCTGACTTACACATTAT
* * * * *
16306425 GCCTCTCCAGCCGACTAAGCACCCGTATGCCCATTTTGTTGGTTGGCTTAGGCATAGGGAGTTCA
66 GCCTCTCCAGCCGACTAAGCACCCGCATGCCCATTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * *
16306490 TTCCATGACTAAGCCCCAGCCAGACTGAA
131 TTCCATGACTAAGACCCAACCAAACTGAA
* * * * * * * *
16306519 GGTTGTGGTAGCGGGACCGGCAGCACGCAGAGGGGGACCGGGCCGGTCCTTGGCTTACACGTTAT
1 GGTTGTGATAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCTGACTTACACATTAT
* * * * ** *
16306584 GCCTCTTCGGCCGGCTCAGTGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCA
66 GCCTCTCCAGCCGACTAAGCACCCGCATGCCCATTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * * * * *
16306649 TTCCCTGGCTAAGATCGAATCAAACTGAG
131 TTCCATGACTAAGACCCAACCAAACTGAA
* * * * * * *
16306678 GGTTTTGATAGCAGGATCGACTGCACGCAG-GGGGGACCGTGTCGATCCCTGACTTGCGCATTCT
1 GGTTGTGATAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCTGACTTACACATTAT
* * * * * * * * * * *
16306742 ACCTCTCC-GATCGGCTGAGCACCCGCACGCTCGTTCCATGGGTTGGCTCAGGCATACGGAGTTC
66 GCCTCTCCAG-CCGACTAAGCACCCGCATGCCCATTTCGTGGGTTGACTTAGGCATACGGAGTTC
* *
16306806 ATTCTATGTCTAAG
130 ATTCCATGACTAAG
16306820 CATACAGAGT
Statistics
Matches: 235, Mismatches: 64, Indels: 4
0.78 0.21 0.01
Matches are distributed among these distances:
157 1 0.00
158 110 0.47
159 124 0.53
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (159 bp):
GGTTGTGATAGCAGGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCTGACTTACACATTAT
GCCTCTCCAGCCGACTAAGCACCCGCATGCCCATTTCGTGGGTTGACTTAGGCATACGGAGTTCA
TTCCATGACTAAGACCCAACCAAACTGAA
Found at i:16306842 original size:26 final size:26
Alignment explanation
Indices: 16306793--16306845 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16306783 GTTGGCTCAG
* *
16306793 GCATACGGAGTTCATTCTATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
16306819 GCATACAGAGTTCATTCCCA-GTCTAA
1 GCATACAGAGTTCATT-CCATGTCTAA
16306845 G
1 G
16306846 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:16307572 original size:159 final size:159
Alignment explanation
Indices: 16307402--16307703 Score: 342
Period size: 159 Copynumber: 1.9 Consensus size: 159
16307392 AAGCCCTAGT
* ** ** *
16307402 CGGACCGAGGGTTGTGGCAGCGGGACCGACAGCACGC-AGAGGGGGACCGGGCCAAT-CCTCGGC
1 CGGACCAAGGGTTGCAGCAGCAAGACCAACAGCACGCAAG-GGGGGACCGGGCCAATCCCT-GGC
* * **
16307465 TTGCACATTATGCCTCT-TCGGTCGGCTCAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTATG-
64 TTACACATTATGCCTCTCT-GGTCGGCTCAGCGCCCGTACGCTCATTTCAAGGGTTGACTTA-GA
*
16307528 CATACGGAGTTCATTCCCAATGTAAGATTAGAC
127 CATACCGAGTTCATTCCCAATGTAAGATTAGAC
* * * * * *
16307561 CGGACCAAGGGTTGCAGCTGCAAGATCAACAGCACGTAAGGGGGGATCGGGTCGATCCCTGGCTT
1 CGGACCAAGGGTTGCAGCAGCAAGACCAACAGCACGCAAGGGGGGACCGGGCCAATCCCTGGCTT
* * * * *
16307626 ACGCATTCTGCCTCTCTGGTCGGTTGAGCGCCCGTACGCTCATTTCAAGGGTTGGCTTAGACATA
66 ACACATTATGCCTCTCTGGTCGGCTCAGCGCCCGTACGCTCATTTCAAGGGTTGACTTAGACATA
16307691 CCGAGTTCATTCC
131 CCGAGTTCATTCC
16307704 ATGGCTAAGC
Statistics
Matches: 117, Mismatches: 22, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
158 1 0.01
159 110 0.94
160 6 0.05
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
CGGACCAAGGGTTGCAGCAGCAAGACCAACAGCACGCAAGGGGGGACCGGGCCAATCCCTGGCTT
ACACATTATGCCTCTCTGGTCGGCTCAGCGCCCGTACGCTCATTTCAAGGGTTGACTTAGACATA
CCGAGTTCATTCCCAATGTAAGATTAGAC
Found at i:16307722 original size:26 final size:27
Alignment explanation
Indices: 16307678--16307729 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 27
16307668 TTTCAAGGGT
* *
16307678 TGGCTTAGACATACCGAGTTCATTCCA
1 TGGCTAAGACATACAGAGTTCATTCCA
16307705 TGGCTAAG-CATACAGAGTTCATTCC
1 TGGCTAAGACATACAGAGTTCATTCC
16307730 CAGTCTAAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 16 0.70
27 7 0.30
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (27 bp):
TGGCTAAGACATACAGAGTTCATTCCA
Found at i:16308444 original size:26 final size:26
Alignment explanation
Indices: 16308408--16308460 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16308398 GTTGACTTAG
16308408 GCATACGGAGTTCA-TCCACAGTCTAA
1 GCATACGGAGTTCATTCC-CAGTCTAA
*
16308434 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16308460 G
1 G
16308461 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16308933 original size:158 final size:157
Alignment explanation
Indices: 16308436--16308933 Score: 481
Period size: 158 Copynumber: 3.2 Consensus size: 157
16308426 CAGTCTAAGC
* *
16308436 ATACGGAGTTTATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCTGCAGCAGGATCGACAGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGC-GCAGCAGGATCGACAGC
* * * *
16308501 ACGTAGGGGGGACCAGGCTGATCCCCAGCTTGCGTATTTTG-CTTTTCCGGTCGGTTGAGTGCCC
65 ACGCAGGGGGGACCAGGCTGATCCCCAGCTTGCGCATTATGCCTCTT-CGGTCGGTTGAGTGCCC
* * * *
16308565 GTACAC-CGGTTTCATGAGTTGGCTTAGGC
129 GCACACTC-GTTTCGTGGGTTGGCTTAGGA
** * * * *** *
16308594 ATA-GTGAGTTCATT-CCACGTCTAAGCCCCA-ACTGGGCCAAGGGTTATG-GCAATGGGACCG-
1 ATACG-GAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGG-T-TGCGCAGCAGGATCGA
* * * * * *
16308654 CAGCACGCAGAGGGGGACCAGGCTAATCCCTAGCTTGCACATAATGCCTCTTCGATCGGTTCAGT
61 CAGCACGCAG-GGGGGACCAGGCTGATCCCCAGCTTGCGCATTATGCCTCTTCGGTCGGTTGAGT
* * * *
16308719 GCCCGCACGCTCGTTTCGTGGGTTGACTTATGT
125 GCCCGCACACTCGTTTCGTGGGTTGGCTTAGGA
* * *
16308752 ATACAGAGTTCATTCCCAATCTAAGTTCAGACCGGACCGAGGGTTGCGACAGCAGGATCGACAGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCG-CAGCAGGATCGACAGC
* * * * * * *
16308817 ATGCAGGGGGGACCGGGCCGATCCCCAGCTTACGCATTCTGCCTCTTCGGCCGGTTGAGCGCCCG
65 ACGCAGGGGGGACCAGGCTGATCCCCAGCTTGCGCATTATGCCTCTTCGGTCGGTTGAGTGCCCG
*
16308882 CACACTTGTTTCGTGGGTTGGCTTAGGA
130 CACACTCGTTTCGTGGGTTGGCTTAGGA
16308910 ATACGGAGTTCATT-CCATGTCTAA
1 ATACGGAGTTCATTCCCA-GTCTAA
16308934 CCATACGGAG
Statistics
Matches: 266, Mismatches: 59, Indels: 30
0.75 0.17 0.08
Matches are distributed among these distances:
156 2 0.01
157 20 0.08
158 222 0.83
159 20 0.08
160 2 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (157 bp):
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGCAGCAGGATCGACAGCA
CGCAGGGGGGACCAGGCTGATCCCCAGCTTGCGCATTATGCCTCTTCGGTCGGTTGAGTGCCCGC
ACACTCGTTTCGTGGGTTGGCTTAGGA
Found at i:16308958 original size:26 final size:26
Alignment explanation
Indices: 16308910--16308959 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
16308900 TGGCTTAGGA
*
16308910 ATACGGAGTTCATTCCATGTCTAACC
1 ATACGGAGTTCATTCCATCTCTAACC
16308936 ATACGGAGTTCATTCCCA-CTCTAA
1 ATACGGAGTTCATT-CCATCTCTAA
16308960 GATTTTGACC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.30
Consensus pattern (26 bp):
ATACGGAGTTCATTCCATCTCTAACC
Found at i:16310125 original size:157 final size:156
Alignment explanation
Indices: 16309669--16310168 Score: 454
Period size: 157 Copynumber: 3.2 Consensus size: 156
16309659 CCCAGCCTAA
* * *
16309669 GCATATGGAGTTCATTCCCA-GTCTAAGATCGGACCAGACCGAGGGTTACGGTAGTAGGATCGGT
1 GCATA-GGAGTTCATT-CCATGTCTAAGATCGGACCAAACCGAGGGTTTCGGTAGCAGGATCGGT
* *
16309733 AGCACGCAGGGGGGATCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGGTCGGTTAAGCGC
64 AGCACGTA-GGGGGATCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGGTCGGTTAAGTGC
* *
16309798 CCGCACGCCCGTTTCATGGGTTGGCTTAG
128 CCTCACGCTCGTTTCATGGGTTGGCTTAG
* * ** * * * *
16309827 GCATAGGAGTTCATTCCATGACTAAG-CCCTAGCCGAACCGAAGGTTGT-GGTAACGGGA-CTGG
1 GCATAGGAGTTCATTCCATGTCTAAGATCGGA-CCAAACCGAGGGTT-TCGGTAGCAGGATC-GG
* * * * * * ** ** * *
16309889 TAGCACGTAGAGGGGGATCGGGCTGGTCCCTGGCTTGCGCATTATGCCTCTTTGACCGGCTCAGT
63 TAGCACGT--AGGGGGATCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGGTCGGTTAAGT
* * *
16309954 GCCCGT-ATGCTCGTTTCGTGGGTTGACTTAG
126 GCCC-TCACGCTCGTTTCATGGGTTGGCTTAG
* * * * *
16309985 GCTTACGGAGTTCATTCCCA-GTCTAAGATCGGATCAAACTGAGGGTTTCGGTAGCAAGATCGAT
1 GCATA-GGAGTTCATT-CCATGTCTAAGATCGGACCAAACCGAGGGTTTCGGTAGCAGGATCGGT
* * * * *
16310049 AGCACGTAGGGGGACCGGACCGATCCCCAACTTACGCATTCTGCCTCTCCGGTCGGTTGAGTGCT
64 AGCACGTAGGGGGATCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGGTCGGTTAAGTGCC
* * *
16310114 CTCACGTTCGTTCCATGGGTTGGCTCAG
129 CTCACGCTCGTTTCATGGGTTGGCTTAG
*
16310142 GCATATAGAGTTCATTCCATGTCTAAG
1 GCATA-GGAGTTCATTCCATGTCTAAG
16310169 CATACAGAGT
Statistics
Matches: 260, Mismatches: 68, Indels: 29
0.73 0.19 0.08
Matches are distributed among these distances:
156 10 0.04
157 125 0.48
158 76 0.29
159 43 0.17
160 6 0.02
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (156 bp):
GCATAGGAGTTCATTCCATGTCTAAGATCGGACCAAACCGAGGGTTTCGGTAGCAGGATCGGTAG
CACGTAGGGGGATCGGGCCGATCCCCGACTTACGCATTCTGCCTCTCCGGTCGGTTAAGTGCCCT
CACGCTCGTTTCATGGGTTGGCTTAG
Found at i:16310171 original size:26 final size:26
Alignment explanation
Indices: 16310142--16310193 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16310132 GTTGGCTCAG
*
16310142 GCATATAGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
16310168 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
16310194 AATCGGATCG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.21, G:0.15, T:0.33
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:16311785 original size:26 final size:26
Alignment explanation
Indices: 16311749--16311801 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16311739 GTTGACTTAG
*
16311749 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
16311775 GCATACAGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16311801 G
1 G
16311802 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16312233 original size:159 final size:158
Alignment explanation
Indices: 16311775--16312276 Score: 487
Period size: 159 Copynumber: 3.2 Consensus size: 158
16311765 CCCAGTCTAA
* * * * * *
16311775 GCATACAGAGTTTATTCC-CAGTCTAAGATCAGACCGAATCGAGGCTTGCGGCAGCAGGATCGAC
1 GCATACAGAGTTCATTCCAC-GTCTAAGATCA-ACTGGATCAAGGGTTGTGGCAGCAGGATCGAC
* * * * * * *
16311839 AGCACGCA-GGGGGGATCTGGCCGATCCCCAGCTTGCGTATTTTGCTTCTCCGGCTGACTGA-TG
64 AGCACGCAGGGGGGGACCAGGTCGATCCCCAGCTTGCGCATTATGCCTCTCCGGCTGGCTGAGTG
* *
16311902 CCCGTACGCCCGTTTCGTGGGTTGGCTTAG
129 CCCGTACGCTCGTTTCGTGGGTTGACTTAG
* ** * * *
16311932 GCATAGTA-AGTTCATTCCACGTCTAAGCCCCAACTGGACCGAA-GGTTGTGGCAACAGGATCGG
1 GCATA-CAGAGTTCATTCCACGTCTAAG-ATCAACTGGATC-AAGGGTTGTGGCAGCAGGATCGA
* * * * *
16311995 CAGCACGCAGAGGGGGACCAGGTTGATCCCTAGCTTGCGCATTATGCCTCTTCGGCTGGCTCAGT
63 CAGCACGCAGGGGGGGACCAGGTCGATCCCCAGCTTGCGCATTATGCCTCTCCGGCTGGCTGAGT
** * *
16312060 GCTTGTACGTTCGTTTCGTGGGTTGACTTAT
128 GCCCGTACGCTCGTTTCGTGGGTTGACTTAG
* * *
16312091 GCATATAGAGTTCATTCC-CAGTCTAAGATCGAATTGGATCAAGGGTTGTGGCAGTAGGATCGAC
1 GCATACAGAGTTCATTCCAC-GTCTAAGATC-AACTGGATCAAGGGTTGTGGCAGCAGGATCGAC
* * * * * *
16312155 AGCAAGCAGGGGGGGACCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
64 AGCACGCAGGGGGGGACCAGGTCGATCCCCAGCTTGCGCATTATGCCTCTCCGGCTGGCTGAGTG
** *
16312220 CCCACACACTCGTTTCGTGGGTT-AGCTTAG
129 CCCGTACGCTCGTTTCGTGGGTTGA-CTTAG
* *
16312250 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACAGAGTTCATTCCACGTCTAAG
16312277 CATACGGAGT
Statistics
Matches: 275, Mismatches: 58, Indels: 22
0.77 0.16 0.06
Matches are distributed among these distances:
157 51 0.19
158 53 0.19
159 171 0.62
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (158 bp):
GCATACAGAGTTCATTCCACGTCTAAGATCAACTGGATCAAGGGTTGTGGCAGCAGGATCGACAG
CACGCAGGGGGGGACCAGGTCGATCCCCAGCTTGCGCATTATGCCTCTCCGGCTGGCTGAGTGCC
CGTACGCTCGTTTCGTGGGTTGACTTAG
Found at i:16312286 original size:26 final size:26
Alignment explanation
Indices: 16312250--16312302 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16312240 GTTAGCTTAG
16312250 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16312276 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16312302 G
1 G
16312303 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16313482 original size:159 final size:158
Alignment explanation
Indices: 16312993--16313813 Score: 588
Period size: 159 Copynumber: 5.2 Consensus size: 158
16312983 ATCCCCAGTC
* * * * *
16312993 TAAGCACATGGAGTTCATTCCCA-GTCTAAGATCGGACCAGACCGAGGTTTGCGGCAGCAGGATC
1 TAAGCATAGGGAGTTCATT-CCATGTCTAACATCAGACCAGACCGAGGGTTGCGGCAGCAGGATC
* *
16313057 GACAGCATGC-AGGGGGACCGGGTCGATCCCCGACTTACGCATTCTGCCTCTCCGGCCGGTTGA-
65 GACAGCATACGAGGGGGACCGGGTCGATCCCCGACTTACGCATTCTGCCTCTCCGGCCGGCTGAG
* *
16313120 TCGCCCACACACTCATTTCATGGGTTGGCT
130 T-GCCCGCACGCTCATTTCATGGGTTGGCT
** ** * * * *
16313150 TTGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA-ATCGGATCGAGGGTTGTGGCAGCAGGA-C
1 TAAGCATAGGGAGTTCATTCCATGTCTAA-CATCAGACCAGACCGAGGGTTGCGGCAGCAGGATC
** * * * * * * * *
16313213 GGTAGCACACAGAGAGGGACTGGGCCGATCCCCGACTTACGCATTATGCCTCTTCGGTCGGCTCA
65 GACAGCATAC-GAGGGGGACCGGGTCGATCCCCGACTTACGCATTCTGCCTCTCCGGCCGGCTGA
* * * * * *
16313278 GCGCCCGTACGCTCGTTTCGTGGGTTGACA
129 GTGCCCGCACGCTCATTTCATGGGTTGGCT
* *** * * **
16313308 TAGGCATACAAAGTTCATTCC-TAGTCTAATATCAGACCAGACC-AGGGGTTACGATAGCAGGAT
1 TAAGCATAGGGAGTTCATTCCAT-GTCTAACATCAGACCAGACCGA-GGGTTGCGGCAGCAGGAT
* * * * * *
16313371 CGACAGCATACGGGGGGGCACCAGGTCGATCCTCGACTTGCACATTCTGCCTCTCCGGCCTGCTG
64 CGACAGCATACGAGGGGG-ACCGGGTCGATCCCCGACTTACGCATTCTGCCTCTCCGGCCGGCTG
*
16313436 AGTGCCCGCACGCCCATTTCATGGGTTGGCT
128 AGTGCCCGCACGCTCATTTCATGGGTTGGCT
** * * * * *
16313467 TAAGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-TCAGATCGAGGGTTGTGGTAGCGGGA-C
1 TAAGCATAGGGAGTTCATTCCATGTCTAA-CATCAGACCAGACCGAGGGTTGCGGCAGCAGGATC
** ** * * * ** * * * * *
16313530 TGGTAGCACGCAGAGGAGGATCGGGTCGATCCCTGGTTTGCGCATTATGCCTCTTCAGCCGGCTC
65 -GACAGCATAC-GAGGGGGACCGGGTCGATCCCCGACTTACGCATTCTGCCTCTCCGGCCGGCTG
** * * *
16313595 AACGCCCACACGCTCATTTCGTGGGTTGACT
128 AGTGCCCGCACGCTCATTTCATGGGTTGGCT
* * * * * *
16313626 TAGGCATACGGAGTTCATTCCCA-GTCT-ACGATCAGATCGGACTGAGGGTTGCGGTAGCAGGAT
1 TAAGCATAGGGAGTTCATT-CCATGTCTAAC-ATCAGACCAGACCGAGGGTTGCGGCAGCAGGAT
* * * **
16313689 CGACAGCACATAGCGA--GGGATCGGGTCGATCCCCGACTTGCGCATTTTGCCTCTCCGGTAGGC
64 CGACAG--CATA-CGAGGGGGACCGGGTCGATCCCCGACTTACGCATTCTGCCTCTCCGGCCGGC
* * **
16313752 TGAGCGACCGCACGCTTGTTTCATGGGTTGGCT
126 TGAGTGCCCGCACGCTCATTTCATGGGTTGGCT
* * *
16313785 TAGGCATACGGAGTTCACTCCATGTCTAA
1 TAAGCATAGGGAGTTCATTCCATGTCTAA
16313814 GCATACGAAG
Statistics
Matches: 502, Mismatches: 138, Indels: 45
0.73 0.20 0.07
Matches are distributed among these distances:
156 10 0.02
157 48 0.10
158 121 0.24
159 303 0.60
160 15 0.03
161 4 0.01
162 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (158 bp):
TAAGCATAGGGAGTTCATTCCATGTCTAACATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCG
ACAGCATACGAGGGGGACCGGGTCGATCCCCGACTTACGCATTCTGCCTCTCCGGCCGGCTGAGT
GCCCGCACGCTCATTTCATGGGTTGGCT
Found at i:16313718 original size:318 final size:314
Alignment explanation
Indices: 16313002--16313815 Score: 1015
Period size: 318 Copynumber: 2.6 Consensus size: 314
16312992 CTAAGCACAT
* * *
16313002 GGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGTTTGCGGCAGCAGGATCGACAGCAT-G
1 GGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CGAGGGTTGCGGTAGCAGGATCGACAGCATAG
* * *
16313066 CAGGGGGACCGGGTCGATCCCCGACTTACGCATTCTGCCTCTCCGGCCGGTTGA-TCGCCCACAC
65 C-GGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGT-GCCCGCAC
* * *
16313130 ACTCATTTCATGGGTTGGCTTTGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATCGGATCGA
128 GCTCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATCAGATCGA
16313195 GGGTTGTGGCAGCAGGACGGTAGCACACAGAGAGGGACTGGGCCGATCCCCGACTTACGCATTAT
193 GGGTTGTGGCAGCAGGACGGTAGCACACAGAGAGGGACTGGGCCGATCCCCGACTTACGCATTAT
* * * ** *
16313260 GCCTCTTCGGTCGGCTCAGCGCCCGTACGCTCGTTTCGTGGGTTGACATAGGCATAC
258 GCCTCTTCAGCCGGCTCAACGCCCACACGCTCATTTCGTGGGTTGACATAGGCATAC
** * * * * *
16313317 AAAGTTCATTCCTAGTCTAATATCAGACCAGACCAGGGGTTACGATAGCAGGATCGACAGCATAC
1 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACGA-GGGTTGCGGTAGCAGGATCGACAGCATA-
* * * * *
16313382 GGGGGGGCACCAGGTCGATCCTCGACTTGCACATTCTGCCTCTCCGGCCTGCTGAGTGCCCGCAC
64 GCGGGGG-ACCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGTGCCCGCAC
* * *
16313447 GCCCATTTCATGGGTTGGCTTAAGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGATCGA
128 GCTCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATCAGATCGA
* * * * * ** *
16313512 GGGTTGTGGTAGCGGGACTGGTAGCACGCAGAG-GAGGA-TCGGGTCGATCCCTGGTTTGCGCAT
193 GGGTTGTGGCAGCAGGAC-GGTAGCACACAGAGAG-GGACT-GGGCCGATCCCCGACTTACGCAT
*
16313575 TATGCCTCTTCAGCCGGCTCAACGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATAC
255 TATGCCTCTTCAGCCGGCTCAACGCCCACACGCTCATTTCGTGGGTTGACATAGGCATAC
* * *
16313635 GGAGTTCATTCCCAGTCTACGATCAGATCGGACTGAGGGTTGCGGTAGCAGGATCGACAGCACAT
1 GGAGTTCATTCCCAGTCTAAGATCAGACCAGAC-GAGGGTTGCGGTAGCAGGATCGACAG--CAT
* * * ** * *
16313700 AGCGAGGGATCGGGTCGATCCCCGACTTGCGCATTTTGCCTCTCCGGTAGGCTGAGCGACCGCAC
63 AGCGGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGTGCCCGCAC
** * *
16313765 GCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCACTCCATGTCTAAGC
128 GCTCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
16313816 ATACGAAGTT
Statistics
Matches: 421, Mismatches: 67, Indels: 19
0.83 0.13 0.04
Matches are distributed among these distances:
314 2 0.00
315 50 0.12
316 5 0.01
317 126 0.30
318 228 0.54
319 6 0.01
320 4 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (314 bp):
GGAGTTCATTCCCAGTCTAAGATCAGACCAGACGAGGGTTGCGGTAGCAGGATCGACAGCATAGC
GGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGTGCCCGCACGCT
CATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATCAGATCGAGGG
TTGTGGCAGCAGGACGGTAGCACACAGAGAGGGACTGGGCCGATCCCCGACTTACGCATTATGCC
TCTTCAGCCGGCTCAACGCCCACACGCTCATTTCGTGGGTTGACATAGGCATAC
Found at i:16313817 original size:26 final size:26
Alignment explanation
Indices: 16313788--16313840 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16313778 GTTGGCTTAG
*
16313788 GCATACGGAGTTCACT-CCATGTCTAA
1 GCATACGAAGTTCACTCCCA-GTCTAA
*
16313814 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCACTCCCAGTCTAA
16313840 G
1 G
16313841 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCACTCCCAGTCTAA
Found at i:16314014 original size:26 final size:26
Alignment explanation
Indices: 16313984--16314036 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
16313974 GTTGACTTAG
*
16313984 GCATACAGAGTTCA-TCTCCAGTCTAA
1 GCATACAGAGGTCATTC-CCAGTCTAA
**
16314010 GCATATGGAGGTCATTCCCAGTCTAA
1 GCATACAGAGGTCATTCCCAGTCTAA
16314036 G
1 G
16314037 ATCGGATCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGGTCATTCCCAGTCTAA
Found at i:16315719 original size:26 final size:26
Alignment explanation
Indices: 16315683--16315735 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16315673 GTTGACTTAG
16315683 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
16315709 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16315735 G
1 G
16315736 ATCGGATAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16316329 original size:26 final size:26
Alignment explanation
Indices: 16316299--16316351 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16316289 GTTGGCTTAG
16316299 GCATACAGAGTTCATTC-CATGTCTAA
1 GCATACAGAGTTCATTCTCA-GTCTAA
*
16316325 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCTCAGTCTAA
16316351 G
1 G
16316352 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCTCAGTCTAA
Found at i:16317411 original size:159 final size:158
Alignment explanation
Indices: 16317054--16317469 Score: 401
Period size: 159 Copynumber: 2.6 Consensus size: 158
16317044 AAGCATACAA
** * * * *
16317054 AGTTCATTCCCAGTCTAAAAGATTGGACCGGACCGAGGGTTGTGGCAGCAGGATCGATAGCACGC
1 AGTTCATTCCCAGTCT--AAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGACCGACAGCACAC
* * * * * *
16317119 AGGAGGGATCGGGCCGATCCTCGACTTGCGCATTCTACCTCTTCGGCCAGTTGAGCGCCCGCACG
64 AGAAGGGACCGGGCCGATCCTCGACTTGCGCATTATACCTCTTCGGCCAGCTCAGCACCCGCACG
* *
16317184 CCTGTTTCATGGGTTGGCTTAGGCATAGGG
129 CCTGTTTCATGGGTTGACTTAGGCATAAGG
* ** * **
16317214 AGTTCATT-CCATGCCTAAGCCCTAG-TCGGATCGAGGGTTGTGGCAGTGGGACC-AGCAGCACA
1 AGTTCATTCCCA-GTCTAAGATC-AGATCGGACCGAGGGTTGTGGCAGCAGGACCGA-CAGCACA
* * * *
16317276 CAGAAAGGGACCGGGTCGATCCTCGACTTGGGCATTATGCCTCTTCGGCCGGCTCAGCACCCGCA
63 CAG-AAGGGACCGGGCCGATCCTCGACTTGCGCATTATACCTCTTCGGCCAGCTCAGCACCCGCA
*
16317341 CG-CTCGTTTCGTGGGTTGACTTAGGCATAAGG
127 CGCCT-GTTTCATGGGTTGACTTAGGCATAAGG
* * * * * * **
16317373 AGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTTGCGACAGTAGAATCGACAGCATGCAG
1 AGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGACCGACAGCACACAG
** *
16317438 GGGGGACCGGGCCGATCC-CTGACTTACGCATT
66 AAGGGACCGGGCCGATCCTC-GACTTGCGCATT
16317470 CTGTCTCTCT
Statistics
Matches: 205, Mismatches: 42, Indels: 20
0.77 0.16 0.07
Matches are distributed among these distances:
157 2 0.01
158 63 0.31
159 125 0.61
160 15 0.07
ACGTcount: A:0.21, C:0.27, G:0.31, T:0.22
Consensus pattern (158 bp):
AGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGACCGACAGCACACAG
AAGGGACCGGGCCGATCCTCGACTTGCGCATTATACCTCTTCGGCCAGCTCAGCACCCGCACGCC
TGTTTCATGGGTTGACTTAGGCATAAGG
Found at i:16317552 original size:26 final size:26
Alignment explanation
Indices: 16317523--16317574 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
16317513 GTTGGCTTAG
*
16317523 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
16317549 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
16317575 TATAAGACCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:16318164 original size:524 final size:517
Alignment explanation
Indices: 16317099--16318612 Score: 1572
Period size: 524 Copynumber: 2.9 Consensus size: 517
16317089 AGGGTTGTGG
* * * *
16317099 CAGCAGGATCGATAGCACGCAGGAGGGATCGGGCCGATCCTCGACTTGCGCATTCTACCTCTTCG
1 CAGCAAGATCG-TAGCATGCAGGAGGGATCGGGCTGATCCT-GACTTGCGCATTCTGCCTCTTCG
* * *
16317164 GCC-AGTTGAGCGCCCGCACGC-CTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATG
64 ACCGA-CTGAGCGCCCGCACGCTC-GTTTCATGGGTTGGCTTAGGCATA-CGAGTTCATTCCATG
* * * * * *
16317227 CCTAAGCCCTAGTCGGATCGAGGGTTGTGGCAGTGGGACC-AGCAGC--A-C--A-CA-G-AA-A
126 TCTAAGCCCCAGCCGAACCGAGGGTTGTGGCAGTAGGACCGA-CAGCGGATCGAAGCACGCAAGA
* * * * * *
16317282 GGGACCGGGTCGAT-CCTCGACTTGGGCATTATGCCTCTTCGGCCGGCTCAGCACCCGCACGCTC
190 GGGACC-GGTCGATCCCT-GACTTGCGCATTATGCCTCTTCGACTGGCTCAGCGCCTGCATGCTC
* *
16317346 GTTTCGTGGGTTGACTTAGGCATA-AGGAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGG
253 GTTTCGTGGGTTGACTTAGGCATACA-GAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGG
* * * * * *
16317410 TTGCGACAGTAGAATCGACAGCATGCAGGGGGGACCGGGCCGATCCCTGACTTACGCATTCTGTC
317 TTGCGACAGCAGGATCGACAGCACGCAGGGGGGACC-GGCCGATCCCCGGCTTACGCATTCTGCC
* * * ** *
16317475 TCTCTGATCGGCTGAGTGCCCGTACGCTTATTTTATGGGTTGGCTTAGGCATACGGAGTTCATTC
381 TCTCTGACCGGTTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTC
*
16317540 CATGTCTAAGCATACGGAGTTCATTCCAAGTCTAATATAAGACCGCATCGAGGGTTGCGACAGCA
446 CATGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATAAGACCGCATCGAGGGTTGCGACAGCA
16317605 GGACCAC
511 GGACCAC
* * * *
16317612 CAGGAGGATCG-A-CAGTGCACAGGAGGGATCGGGCTGATCCCTGACTTGCACATTCTGCCTCTC
1 CAGCAAGATCGTAGCA-TG--CAGGAGGGATCGGGCTGAT-CCTGACTTGCGCATTCTGCCTCTT
*
16317675 CGACCGACTGAGCGCCCGCACGCTCGTTTCATGGGATGGCTTAGGCATACAGAGTTCATTCCATG
62 CGACCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAC-GAGTTCATTCCATG
* * * *
16317740 TCTAAGCCCCAACCGAACCGAGGGTTGGGGTAGCAGGACCGACAGCGGGATCGATAGCACGCAAG
126 TCTAAGCCCCAGCCGAACCGAGGGTTGTGGCAGTAGGACCGACAGC-GGATCGA-AGCACGCAAG
*
16317805 AGGGACCGGTCCACTCCCTGACTTGCGCATTATGCCTCTTCGACTGGCTCAGCGCCTGCATGCTC
189 AGGGACCGGTCGA-TCCCTGACTTGCGCATTATGCCTCTTCGACTGGCTCAGCGCCTGCATGCTC
* * ***
16317870 GTTTCGTGGGTTGACTTATGTATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGAGAAAGGGT
253 GTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGT
* * ** * **
16317935 TGCGACAGCAGGATTGACAGCACACAGAAGCGACCAACCGATCCCCGGCTTACGCATTCTGCCTC
318 TGCGACAGCAGGATCGACAGCACGCAGGGGGGACCGGCCGATCCCCGGCTTACGCATTCTGCCTC
* * * * *
16318000 TCCGACCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTAGCTTAGACATACGGACTTCATTCCA
383 TCTGACCGGTTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCA
** * * ** *
16318065 TGTCTAAGCATACGGAGTTCATTCTTAGTCTAAGATCAGATCGGGTCGAGGGTTGCGACTGCAGG
448 TGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATAAGACCGCATCGAGGGTTGCGACAGCAGG
*
16318130 ACCAG
513 ACCAC
* ** * *
16318135 CAGCAAGATTGGTAGCATGCAGTGAGGGATAAGGCTGATCCTCAGCTTGCGCGTTCTGCCTCTTC
1 CAGCAAGA-TCGTAGCATGCAG-GAGGGATCGGGCTGATCCTGA-CTTGCGCATTCTGCCTCTTC
* * * *
16318200 GATCGGCTGATCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCAATGT
63 GACCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACG-AGTTCATTCCATGT
* *
16318265 CTAAGCCCCAGCC-AGACCGAGGGTTGTGGCAGTAGGACTGGCAGCGAGATCGACAGCACGCAGA
127 CTAAGCCCCAGCCGA-ACCGAGGGTTGTGGCAGTAGGACCGACAGCG-GATCGA-AGCACGCA-A
* * * * * * ** **
16318329 GAGGGATCGAG-CTGATCCCCGGCTTACGCATTATACCTCTCCGACCTACCTCTTCGACCGGTTG
188 GAGGGACCG-GTC-GATCCCTGACTTGCGCATTATGCCTCTTCGA-CTGGCTCAGCG-CC---T-
* *
16318393 AGTACCTATACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCTCG
245 -G---C-AT--GCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCG
* * ** * *
16318458 GACCGGATCGAGGGTTGCGACAGC-GAGATCGGTAGCACGCAGGGGGGATCGGGTCGATCCCCGG
303 GATCGGACCGAGGGTTGCGACAGCAG-GATCGACAGCACGCAGGGGGGA-CCGGCCGATCCCCGG
* * * * *
16318522 CTTGCGCATTTTGCCTCTCTGGCCGGTTGAGTGCCCGCACGCCCGTTTCATGGGTTGGCCTAGGC
366 CTTACGCATTCTGCCTCTCTGACCGGTTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGC
*
16318587 ATAGGGAGTTCATTCCATGTCTAAGC
431 ATACGGAGTTCATTCCATGTCTAAGC
16318613 CCCAGCCGGA
Statistics
Matches: 824, Mismatches: 129, Indels: 70
0.81 0.13 0.07
Matches are distributed among these distances:
510 2 0.00
511 2 0.00
513 136 0.17
514 6 0.01
516 1 0.00
517 1 0.00
520 1 0.00
521 2 0.00
522 1 0.00
523 163 0.20
524 273 0.33
525 41 0.05
526 11 0.01
527 2 0.00
530 1 0.00
532 1 0.00
535 1 0.00
536 2 0.00
537 1 0.00
538 85 0.10
539 91 0.11
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (517 bp):
CAGCAAGATCGTAGCATGCAGGAGGGATCGGGCTGATCCTGACTTGCGCATTCTGCCTCTTCGAC
CGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGAGTTCATTCCATGTCTAA
GCCCCAGCCGAACCGAGGGTTGTGGCAGTAGGACCGACAGCGGATCGAAGCACGCAAGAGGGACC
GGTCGATCCCTGACTTGCGCATTATGCCTCTTCGACTGGCTCAGCGCCTGCATGCTCGTTTCGTG
GGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAG
CAGGATCGACAGCACGCAGGGGGGACCGGCCGATCCCCGGCTTACGCATTCTGCCTCTCTGACCG
GTTGAGTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
CATACGGAGTTCATTCCAAGTCTAAGATAAGACCGCATCGAGGGTTGCGACAGCAGGACCAC
Found at i:16318908 original size:159 final size:157
Alignment explanation
Indices: 16318402--16318909 Score: 576
Period size: 159 Copynumber: 3.2 Consensus size: 157
16318392 GAGTACCTAT
16318402 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCTCGGACCGGATC
1 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-TCGGACCGGATC
** * *
16318467 GAGGGTTGCGACAGC-GAGATCGGTAGCACGCAGGGGGGA-TCGGGTCGATCCCCGGCTTGCGCA
65 GAGGGTTGCGGTAGCAG-GATCGATAGCACGCAGAGGGGACT-GGGTCGATCCCCGGCTTGCGCA
16318530 TTTTGCCTCTCTGGCCGGTTGAGTGCCCGC
128 TTTTGCCTCTCTGGCCGGTTGAGTGCCCGC
* * * * * * **
16318560 ACGCCCGTTTCATGGGTTGGCCTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGCCGGAT
1 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGTCGGA-CCGGAT
* * ** *
16318624 CGAGGGTTGTGGTAGCAGGACCGATAGCACGCAGAGGGGGACCAGGTCGATCCTCGGCTTGCGCA
64 CGAGGGTTGCGGTAGCAGGATCGATAGCACGCAGA-GGGGACTGGGTCGATCCCCGGCTTGCGCA
* * *
16318689 TTATGCCTCT-TCGGCCGGTTCAGTGCCTGC
128 TTTTGCCTCTCT-GGCCGGTTGAGTGCCCGC
* * ** * *
16318719 ACGCTCATTTTGTAAGTTGAATTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATC
1 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-TCGGACCGGATC
* * * *
16318784 GAGGGTTGCGGTAGCAGGATCGACAGCACACAGTAGGGGACTGGG-CTGGTCCCCGACTTGCGCA
65 GAGGGTTGCGGTAGCAGGATCGATAGCACGCAG-AGGGGACTGGGTC-GATCCCCGGCTTGCGCA
* **
16318848 TTTTACCTCTCTGGCCGGTTGAGCACCCGC
128 TTTTGCCTCTCTGGCCGGTTGAGTGCCCGC
* *
16318878 ACGCTCGTTTCGTGGGTTGGCTTAGACATACG
1 ACGCTCGTTTCGTGGGTTGACTTAGGCATACG
16318910 AATTCCATTC
Statistics
Matches: 283, Mismatches: 56, Indels: 21
0.79 0.16 0.06
Matches are distributed among these distances:
157 5 0.02
158 78 0.28
159 193 0.68
160 7 0.02
ACGTcount: A:0.18, C:0.26, G:0.32, T:0.24
Consensus pattern (157 bp):
ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGTCGGACCGGATCG
AGGGTTGCGGTAGCAGGATCGATAGCACGCAGAGGGGACTGGGTCGATCCCCGGCTTGCGCATTT
TGCCTCTCTGGCCGGTTGAGTGCCCGC
Found at i:16319285 original size:341 final size:341
Alignment explanation
Indices: 16318679--16319299 Score: 791
Period size: 341 Copynumber: 1.8 Consensus size: 341
16318669 GTCGATCCTC
* * * *
16318679 GGCTTGCGCATTATGCCTCTTCGGCCGGTTCAGTGCCTGCACGCTCATTTTGTAAGTTGAATTAG
1 GGCTTGCGCATTATGCCTCTTCGACCGGCTCAGCGCCTGCACGCTCATTTCGTAAGTTGAATTAG
** * * **
16318744 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGGTAGCAGGATCGACA
66 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAAACCGAAGGTTGCGACAGCAGGATCGACA
* * * * * *
16318809 GCACACAGTAGGGGACTGGGCTGGTCCCCGACTTGCGCATTTTACCTCTCTGGCCGGTTGAGCAC
131 GCACACA-TAGGGGACTGAGCCGATCCCCGACTTGCGCATTCTACCTCTCCGGCCAGTTGAGCAC
*
16318874 CCGCACGCTCGTTTCGTGGGTTGGCTTAGACATACGAATTCCATTCCATGTCTAAGCATACGGAG
195 CCGCACGCTCGTTTCGTGCGTTGGCTTAGACATACGAATTCCATTCCATGTCTAAGCATACGGAG
* *
16318939 TTCATTCCTAGTCTAAGATTGGACTGAACTGAGGGTTGCGGCAGCAAGATCGGTAGCACGCAGGG
260 TTCATTCCCAGTCAAAGATTGGACTGAACTGAGGGTTGCGGCAGCAAGATCGGTAGCACGCAGGG
16319004 GGACCGATCCGCTCTCT
325 GGACCGATCCGCTCTCT
* * * ** *
16319021 GGCTTGCGCATTATGCCTTTTTGACCGGCTCAGCG-CTCGCACGCTCGTTTCGTGGGTTGACTTA
1 GGCTTGCGCATTATGCCTCTTCGACCGGCTCAGCGCCT-GCACGCTCATTTCGTAAGTTGAATTA
* * * * * * *
16319085 TGCATACGGAGTTCATTCCCCGTCTAAGATTGGATTAAACCGAAGGTTGTGACAGCGGGATTGAC
65 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAAACCGAAGGTTGCGACAGCAGGATCGAC
* ** * *
16319150 AGCACAC-TGGGGCGA-TCGAGCCGATCCTTGACTTGCGCATTCTGCCTCTCCGGTCAGTTGAGC
130 AGCACACATAGGG-GACT-GAGCCGATCCCCGACTTGCGCATTCTACCTCTCCGGCCAGTTGAGC
* * * * *
16319213 GCTCGTACGCTCGTTTCGTGCGTTGGCTTAGGCATACGGAGTT-CATTCCATGTCTAAGCATACG
193 ACCCGCACGCTCGTTTCGTGCGTTGGCTTAGACATAC-GAATTCCATTCCATGTCTAAGCATACG
16319277 GAGTTCATTCCCAGTCAAAGATT
257 GAGTTCATTCCCAGTCAAAGATT
16319300 TTGAGCAACG
Statistics
Matches: 233, Mismatches: 42, Indels: 9
0.82 0.15 0.03
Matches are distributed among these distances:
340 5 0.02
341 114 0.49
342 114 0.49
ACGTcount: A:0.19, C:0.26, G:0.28, T:0.27
Consensus pattern (341 bp):
GGCTTGCGCATTATGCCTCTTCGACCGGCTCAGCGCCTGCACGCTCATTTCGTAAGTTGAATTAG
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAAACCGAAGGTTGCGACAGCAGGATCGACA
GCACACATAGGGGACTGAGCCGATCCCCGACTTGCGCATTCTACCTCTCCGGCCAGTTGAGCACC
CGCACGCTCGTTTCGTGCGTTGGCTTAGACATACGAATTCCATTCCATGTCTAAGCATACGGAGT
TCATTCCCAGTCAAAGATTGGACTGAACTGAGGGTTGCGGCAGCAAGATCGGTAGCACGCAGGGG
GACCGATCCGCTCTCT
Found at i:16320922 original size:27 final size:27
Alignment explanation
Indices: 16320864--16320922 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
16320854 ACTCTTTCTA
* ***
16320864 AAAAAGTTTTGAAAAATCCTGAACTGT
1 AAAAAGTTTTGAAAAATCATGAAAAAT
16320891 AAAAAGTTTTG-AAAATCATGAAAAAT
1 AAAAAGTTTTGAAAAATCATGAAAAAT
16320917 AGAAAA
1 A-AAAA
16320923 CAGGTCGTCT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 12 0.44
27 15 0.56
ACGTcount: A:0.54, C:0.07, G:0.14, T:0.25
Consensus pattern (27 bp):
AAAAAGTTTTGAAAAATCATGAAAAAT
Found at i:16321816 original size:184 final size:183
Alignment explanation
Indices: 16321387--16321816 Score: 497
Period size: 184 Copynumber: 2.3 Consensus size: 183
16321377 TGGGTTGACT
* * * * * *
16321387 TAGGCATACGGAGTTCATTCCTAGTCTAAAATTAGACCGGACCGAGGGTTGCGGTAGTAGGATCA
1 TAGGCATATGGAGTTCATTCCTAGTCTAAGATCAGA-CGAACCGAGGGTTGCGATAGCAGGATCA
* * * ** * * * * *
16321452 AAAGCACGCAGGGGGGATCGGGCCGGTCTTTGGCTTATGCATTCTGCCTCTCCGACCGGCTGAGT
65 AAAGCACGCAAGGGGGATCGAGCCGATCCCTGACTTACGCATTCTACCTCTCCGACCAGCTGAGC
* * * * *
16321517 GCCTGCGCGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCCTGTC
130 GCCCGCACACTCATTTCATGGGTTGGCCTAGGCATACGGAGTTCATTCCATGTC
* * * *
16321571 TAGGCATATGGAGTTCATTCCTAGTATAAGATCAGACCAGACCAAGGGTTGC-AGCAGCAGGAT-
1 TAGGCATATGGAGTTCATTCCTAGTCTAAGATCAGACGA-ACCGAGGGTTGCGA-TAGCAGGATC
** * *
16321634 AGGCAGCACGCAAGGGGGATCGAGCTGATCCCTGACTTACGCATTCTACCTCTCCGGCCAGCTGA
64 A-AAAGCACGCAAGGGGGATCGAGCCGATCCCTGACTTACGCATTCTACCTCTCCGACCAGCTGA
* *
16321699 GCGCCCGCACACTCGTTTCGTGGGTTGGCCTAGGCATACGGAGTGT-ATTCCATGTC
128 GCGCCCGCACACTCATTTCATGGGTTGGCCTAGGCATACGGAGT-TCATTCCATGTC
*
16321755 TAGGCATATAGAGTTCATTCCTAGTCTAAGATCAGATCGAACCGAGGGTTGCGATAGCAGGA
1 TAGGCATATGGAGTTCATTCCTAGTCTAAGATCAGA-CGAACCGAGGGTTGCGATAGCAGGA
16321817 CCAGCAACAA
Statistics
Matches: 204, Mismatches: 36, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
183 2 0.01
184 198 0.97
185 4 0.02
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.24
Consensus pattern (183 bp):
TAGGCATATGGAGTTCATTCCTAGTCTAAGATCAGACGAACCGAGGGTTGCGATAGCAGGATCAA
AAGCACGCAAGGGGGATCGAGCCGATCCCTGACTTACGCATTCTACCTCTCCGACCAGCTGAGCG
CCCGCACACTCATTTCATGGGTTGGCCTAGGCATACGGAGTTCATTCCATGTC
Found at i:16321970 original size:26 final size:26
Alignment explanation
Indices: 16321941--16321993 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16321931 GTTGACTTAG
* **
16321941 GCATACGGAGTACATTTTCAGTCTAA
1 GCATACGCAGTACATTCCCAGTCTAA
*
16321967 GCATACGCAGTTCATTCCCAGTCTAA
1 GCATACGCAGTACATTCCCAGTCTAA
16321993 G
1 G
16321994 ATCAAACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGCAGTACATTCCCAGTCTAA
Found at i:16322911 original size:184 final size:186
Alignment explanation
Indices: 16322586--16323032 Score: 499
Period size: 184 Copynumber: 2.4 Consensus size: 186
16322576 ACCACCCGTT
* * * * *
16322586 CGATCCTCGGCTTGCGCATCCTGCCTC-TCTGGTCGGCTGAGCGTCCGAACGCTCATTTCGTGGG
1 CGATCCCCGACTTGCGCATTCTGCCTCTTC-GGCCGGCTGAGCGTCCGAACGCTCGTTTCGTGGG
* * *
16322650 TTGACTTAGGCATACAGAGTTCATCCCGAATCTAAGCAGACGAAGTTCATTCTCAATCTAAGATC
65 TTGACTTAGGCATACAGAGTTCATCCCCAATCTAAGCAGACGAAGTTCATTCCCAATCCAAGATC
* * **
16322715 GGACCAGACCGAGGGTTGCTACAGTAGCATCGGTAGCACGCAAGGGAG-ACCGGG-C
130 GGACCAGACCGAGGGTTGCGACAATAGCATCGACAGCACGCAAGGGAGCACCGGGTC
* *
16322770 CGATCCCCGACTTGCGCATTCTGCCTCTTCGGCCGGCTGAGC-ACCTGCACGCTCGTTTCGTGGG
1 CGATCCCCGACTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCGTCC-GAACGCTCGTTTCGTGGG
** * * * *
16322834 TTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCCAAGATC
65 TTGACTTAGGCATACAGAGTTCATCCCCAATCTAAGCAGACGAAGTTCATTCCCAATCCAAGATC
* * * * * * * *
16322899 GGATCGGACCGAGGGTTGCGGCAATAGGATCGACAGCACGTAGGGGGGCATCGGGTC
130 GGACCAGACCGAGGGTTGCGACAATAGCATCGACAGCACGCAAGGGAGCACCGGGTC
* ** * * * * * *
16322956 AGA-CCCCGACTTGCATATTCTGCCACTCCGGCCGGTTGAGCGTCCGTACGCCCGTTTCATGGGT
1 CGATCCCCGACTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCGTCCGAACGCTCGTTTCGTGGGT
*
16323020 TGGCTTAGGCATA
66 TGACTTAGGCATA
16323033 GGGAAGTCAT
Statistics
Matches: 219, Mismatches: 39, Indels: 9
0.82 0.15 0.03
Matches are distributed among these distances:
183 2 0.01
184 144 0.66
185 68 0.31
186 5 0.02
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.23
Consensus pattern (186 bp):
CGATCCCCGACTTGCGCATTCTGCCTCTTCGGCCGGCTGAGCGTCCGAACGCTCGTTTCGTGGGT
TGACTTAGGCATACAGAGTTCATCCCCAATCTAAGCAGACGAAGTTCATTCCCAATCCAAGATCG
GACCAGACCGAGGGTTGCGACAATAGCATCGACAGCACGCAAGGGAGCACCGGGTC
Found at i:16323223 original size:26 final size:26
Alignment explanation
Indices: 16323187--16323239 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16323177 GTTGGCTTAG
16323187 GCATACGGAGTTAATT-CCATGTCTAA
1 GCATACGGAGTTAATTCCCA-GTCTAA
*
16323213 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
16323239 G
1 G
16323240 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:16324419 original size:26 final size:26
Alignment explanation
Indices: 16324389--16324441 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16324379 GTTGGCTTAG
**
16324389 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16324415 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16324441 G
1 G
16324442 ATTTTAAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16325153 original size:26 final size:26
Alignment explanation
Indices: 16325124--16325176 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16325114 GTTGACTTAG
*
16325124 GCATACGGAGTTCA-TCTCCAATCTAA
1 GCATACAGAGTTCATTC-CCAATCTAA
16325150 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
16325176 G
1 G
16325177 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:16325504 original size:26 final size:26
Alignment explanation
Indices: 16325467--16325519 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16325457 GTTGCTTTAG
16325467 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
16325493 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16325519 G
1 G
16325520 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16326222 original size:26 final size:26
Alignment explanation
Indices: 16326185--16326237 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16326175 GTTGACTTAG
16326185 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
16326211 GCATAC-AGAGTTTATTCCCAGTCTAA
1 GCATACGA-AGTTCATCCCCAGTCTAA
16326237 G
1 G
16326238 ATCAAACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:16326723 original size:26 final size:26
Alignment explanation
Indices: 16326687--16326737 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
16326677 TGACTTAGGT
16326687 ATACGGAGTTCATCCCCAGTCTAAGC
1 ATACGGAGTTCATCCCCAGTCTAAGC
*
16326713 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATCCCCAGTCTAAG
16326738 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGC
Found at i:16327072 original size:26 final size:26
Alignment explanation
Indices: 16327033--16327107 Score: 125
Period size: 26 Copynumber: 2.9 Consensus size: 26
16327023 GGCTTAGGCA
16327033 TACGGAGTTCATTCCATGTCTAACCG
1 TACGGAGTTCATTCCATGTCTAACCG
*
16327059 TATGGAGTTCATTCCATGTCTAACCG
1 TACGGAGTTCATTCCATGTCTAACCG
16327085 TACGGAGTTCATTCC-TAGTCTAA
1 TACGGAGTTCATTCCAT-GTCTAA
16327108 GATCAGACTA
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
25 1 0.02
26 45 0.98
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.33
Consensus pattern (26 bp):
TACGGAGTTCATTCCATGTCTAACCG
Found at i:16327260 original size:26 final size:26
Alignment explanation
Indices: 16327212--16327264 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16327202 ATTGACTTAG
*
16327212 GCATACGGAGTTCATCCTTAGTCTAA
1 GCATACGGAGTTCATCCTCAGTCTAA
*
16327238 GCATACGGAGTTTATTCC-CAGTCTAA
1 GCATACGGAGTTCA-TCCTCAGTCTAA
16327264 G
1 G
16327265 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCCTCAGTCTAA
Found at i:16327712 original size:157 final size:156
Alignment explanation
Indices: 16327238--16327738 Score: 449
Period size: 159 Copynumber: 3.2 Consensus size: 156
16327228 CTTAGTCTAA
* *
16327238 GCATACGGAGTTTATTCCCA-GTCTAAGATCGGACTGGA-TCGAGGGTTGCGATAGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGATCAGACTGGACT-GAGGGTTGCGATAGC-GGATCGA
* *
16327301 CAGCACGTAGGGGGGGATCGGG-TCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAG
63 CAGCACGTA-GGGGGGATCGGGCT-GATCCCCGACTTACGCATTCTGCCTCTCCGACCGGCTGAG
* * *
16327365 CGCCCGCATGCCCATTTCGTGGGTTGGCTTAG
126 CGCCCACATGCTCATTTCATGGGTT-GCTTAG
** * * * ** *
16327397 GCATA-GAGAGTTCATTCCATGTCTAAGCCCTAGTC-GGACCGAGGGTTGTGGCAGCGGCTCCGA
1 GCATACG-GAGTTCATTCCATGTCTAAGATC-AGACTGGACTGAGGGTTGCGATAGCGGAT-CGA
* * * * * * * * * *
16327460 CAGTACGTAGAGGGGGACCAGGCTGATCCCCAACTTACGCATTATGCCTCTCCAACTGGGTCAGT
63 CAGCACGTAG-GGGGGATCGGGCTGATCCCCGACTTACGCATTCTGCCTCTCCGACCGGCTGAGC
* * * *
16327525 GCCTGA-ACGCTCATTTCTTTGGTTGACTTAG
127 GCC-CACATGCTCATTTCATGGGTTG-CTTAG
* * *
16327556 GCATACGGAGTTCATTCCA-GTCTAAGATCAGACTGGACTGAGGGTTGCAATAACGGGATCGATA
1 GCATACGGAGTTCATTCCATGTCTAAGATCAGACTGGACTGAGGGTTGCGATAGC-GGATCGACA
* * * * * * *
16327620 GCACGCAGGGGGGATCGGGCTGGTCCCTGGCTTACGCATCCTACCTCTCCGCCCGGCTGAGCGCC
65 GCACGTAGGGGGGATCGGGCTGATCCCCGACTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCC
*
16327685 CACATGCTCGTTTCATGGGTTAGCTTAG
130 CACATGCTCATTTCATGGGTT-GCTTAG
**
16327713 GCATATAGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
16327739 TCATACGGAG
Statistics
Matches: 264, Mismatches: 63, Indels: 31
0.74 0.18 0.09
Matches are distributed among these distances:
156 1 0.00
157 81 0.31
158 48 0.18
159 130 0.49
160 4 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.24
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACTGGACTGAGGGTTGCGATAGCGGATCGACAG
CACGTAGGGGGGATCGGGCTGATCCCCGACTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCCC
ACATGCTCATTTCATGGGTTGCTTAG
Found at i:16327889 original size:183 final size:183
Alignment explanation
Indices: 16327557--16327921 Score: 430
Period size: 183 Copynumber: 2.0 Consensus size: 183
16327547 TTGACTTAGG
* * * * * *
16327557 CATACGGAGTTCATTCCAGTCTAAGATCAGACTGGACTGAGGGTTGCAATAACGGGATCGATAGC
1 CATACGGAGTTCATTCCAATCTAAGATCAGACTAGACTGAGGGTTGCAACAACAGGATCGACAGA
* * * * * * *
16327622 ACGCAGGGGGGATCGGGCTGGTCCCTGGCTTACGCATCCTACCTCTCCGCCCGGCTGAGCGCCCA
66 ACGCAGGGGGGATCGGGCTGATCCCCGACTTACGCATCCTACCTCTCCGACCAGCCGAGCACCCA
* * *
16327687 CATGCTCGTTTCATGGGTTAGCTTAGGCATATAGAGT-TCATTCCATGTCTAAT
131 CACGCCCGTTTCATGGGTTAGCTTAGGCATAGAGA-TCTCATTCCATGTCTAAT
* ** *
16327740 CATACGGAGTTCATTCCCAATCTAAGATCGGA-TCAGACTGAGGGTTGCGGCAGCAGGATCGACA
1 CATACGGAGTTCATT-CCAATCTAAGATCAGACT-AGACTGAGGGTTGCAACAACAGGATCGACA
* * * * *
16327804 GAACGTA-GGGGGTTCGGGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGACCAGCCGAGCACC
64 GAACGCAGGGGGGATCGGGCTGATCCCCGACTTACGCATCCTACCTCTCCGACCAGCCGAGCACC
* * *
16327868 CGCACGCCCGTTTCGTGGGTTAGCTTAGGCATAGGGATCTCATTCCATGTCTAA
129 CACACGCCCGTTTCATGGGTTAGCTTAGGCATAGAGATCTCATTCCATGTCTAA
16327922 GCCCCAGTCG
Statistics
Matches: 151, Mismatches: 28, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
182 1 0.01
183 108 0.72
184 42 0.28
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (183 bp):
CATACGGAGTTCATTCCAATCTAAGATCAGACTAGACTGAGGGTTGCAACAACAGGATCGACAGA
ACGCAGGGGGGATCGGGCTGATCCCCGACTTACGCATCCTACCTCTCCGACCAGCCGAGCACCCA
CACGCCCGTTTCATGGGTTAGCTTAGGCATAGAGATCTCATTCCATGTCTAAT
Found at i:16328134 original size:499 final size:494
Alignment explanation
Indices: 16327189--16328788 Score: 1730
Period size: 499 Copynumber: 3.2 Consensus size: 494
16327179 CCGGTCCCCG
* ** * * *
16327189 GCTCATTTCATGCATTGACTTAGGCATACGGAGTTCA-TCCTTAGTCTAAGCATACGGAGTTTAT
1 GCTCGTTTCATGGGTTG-CTTAGGCATACAGAGTTCATTCCAT-GTCTAAGCATACGGAGTTCAT
**
16327253 TCCCAGTCTAAGATCGGACTGGA-TCGAGGGTTGCGATAGCAGGATCGACAGCACGTAGGGGGGG
64 TCCCAGTCTAAGATCGGAC-GGACT-GAGGGTTGCGGCAGCAGGATCGACAGCACGTA--GGGGG
*
16327317 ATCGGG-TCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCATGCCCATT
125 ATCGGGCT-GATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCATGCCCGTT
* *
16327381 TCGTGGGTTGGCTTAGGCATAGAGAGTTCATTCCATGTCTAAGCCCTAGTCGGACCGAGGGTTGT
189 TCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGT
** * * * * *
16327446 GGCAGCGGCTCCGACAGTACGTAGAGGGGGACCAGG-CTGATCCCCAACTTACGCATTATGCCTC
254 GGCAGCGGGACCGACAGCACGCAGAGGGGGACCGGGTC-GATCCCCGACTTACGCATTATACCTC
* * * *
16327510 TCCAACTGGGTCA-GTGCCTGAACGCTCATTTCTTTGGTTGACTTAGGCATACGGAGTTCA-TTC
318 TCCAACCGGCTCACGT-CC-GAACGCTC-TTTCATGGGTTGACTTAGGCATACGGAGTTCATTTC
* * * **
16327573 CAGTCTAAGATCAGACTGGACTGAGGGTTGCAAT-AACGGGATCGATAGCACGCAGGGGGGATCG
380 CAGTCTAAGATCAGACCGGACCGAGGGTT---ATGAGCAAGATCGATAGCACGCAGGGGGGATCG
* * * *
16327637 GGCTGGTCCCTGGCTTACGCATCCTACCTCTCCGCCCGGCTGAGCGCCCACAT
442 GGCTGATCCCTGGCTTGCGCATTCTACCTCTCCGCCCGGCTGAGCGCCCACAC
* *
16327690 GCTCGTTTCATGGGTTAGCTTAGGCATATAGAGTTCATTCCATGTCTAATCATACGGAGTTCATT
1 GCTCGTTTCATGGGTT-GCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATT
* * * *
16327755 CCCAATCTAAGATCGGATCAGACTGAGGGTTGCGGCAGCAGGATCGACAGAACGTAGGGGGTTCG
65 CCCAGTCTAAGATCGGA-CGGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGGGGGATCG
* * * * *
16327820 GGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGACCAGCCGAGCACCCGCACGCCCGTTTCGTG
129 GGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCATGCCCGTTTCGTG
* *
16327885 GGTTAGCTTAGGCATAGGGA-TCTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTA
194 GGTTGGCTTAGGCATAGGGAGT-TCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCA
** * * * * *
16327949 GCGGGACCGGTAGCACACAAAGGAGGACTGGGTCGATCCCCGACTTACGCATTATACCTCTCCGA
258 GCGGGACCGACAGCACGCAGAGGGGGACCGGGTCGATCCCCGACTTACGCATTATACCTCTCCAA
* * * * * *
16328014 CCGGCTCACCGTTCGAACGCTCGTTTCGTGGGTTGACTTCGGCATATGGAGTTAATTTTCAGTCT
323 CCGGCTCA-CGTCCGAACGCTC-TTTCATGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCT
* * * * * *
16328079 AAGATCAGACCGGACCAAGGGTTATGGGCAAGATTGACAGCACGCAAGCGGGGATCGGGTTGATC
386 AAGATCAGACCGGACCGAGGGTTATGAGCAAGATCGATAGCACGC-AGGGGGGATCGGGCTGATC
* **
16328144 CCTAGCTTGCGCATTCTACCTCTCCGCCCATCTGAGCGCCCACAC
450 CCTGGCTTGCGCATTCTACCTCTCCGCCCGGCTGAGCGCCCACAC
* * * *
16328189 GCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTTTAAT
1 GCTCGTTTCATGGGTT-GCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATT
* * *
16328254 -CCAGTCTAAGATCGGACCGGACTGAAGGTTACGGTAGCAGCACCAGTAGCAAGATCGAAAGCAC
65 CCCAGTCTAAGATCGGA-CGGACTGAGGGTTGC-G--GCAG---C---AG---GATCGACAGCAC
** * * * * * *
16328318 GTAGGGGGAATCGGGCCAATTCTCGGCTTACGCATTCTGTCTCTCCGGCCGGCTGAGCGCCCGTA
117 GTAGGGGG-ATCGGGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCA
* * * * *
16328383 TGCCCGTTTCATGGATTGGCTTAGGCATAGGGAGTTCATTACATGTCTAAGCCCCAGTCAGACCA
181 TGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCG
* * *
16328448 AGTGTTGTGGCAGCGGGACTGACAGCACGCAGAGGGGGACCGGGTCGATCCCTGACTTACGCATT
246 AGGGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCGGGTCGATCCCCGACTTACGCATT
* * * **
16328513 ATCCCTCTCCAACCGACTCAACGCCCGAACGCTTCTTTCATGGGTTGACTTAGGCATACATAGTT
311 ATACCTCTCCAACCGGCTC-ACGTCCGAACGC-TCTTTCATGGGTTGACTTAGGCATACGGAGTT
* ** * * * *
16328578 CATTCCCAGTCTAAGATTGGATCGGATCGAGGGCTATAGCAGCAAGATCGATAGCATGCAGGGGG
374 CATTTCCAGTCTAAGATCAGACCGGACCGAGGGTTAT-G-AGCAAGATCGATAGCACGCAGGGGG
* * * * *
16328643 GATCGGGCTGAT-CCTCGGCTTGCG-AGTTTTGCCTCTCCAG-GCGGCTGAGCACCCGCAC
437 GATCGGGCTGATCCCT-GGCTTGCGCA-TTCTACCTCTCC-GCCCGGCTGAGCGCCCACAC
* *
16328701 GCTCATTTCATGGGTTGACTTAGACATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATT
1 GCTCGTTTCATGGGTTG-CTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATT
* *
16328766 ACCAGTCTAAGATCAGACCGGAC
65 CCCAGTCTAAGATCGGA-CGGAC
16328789 CAAAGGGTTA
Statistics
Matches: 914, Mismatches: 150, Indels: 58
0.81 0.13 0.05
Matches are distributed among these distances:
497 2 0.00
498 41 0.04
499 327 0.36
500 31 0.03
501 103 0.11
502 7 0.01
504 1 0.00
507 2 0.00
510 18 0.02
511 237 0.26
512 108 0.12
513 37 0.04
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (494 bp):
GCTCGTTTCATGGGTTGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTC
CCAGTCTAAGATCGGACGGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGGGGGATCGGG
CTGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGCATGCCCGTTTCGTGGG
TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCG
GGACCGACAGCACGCAGAGGGGGACCGGGTCGATCCCCGACTTACGCATTATACCTCTCCAACCG
GCTCACGTCCGAACGCTCTTTCATGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAAGAT
CAGACCGGACCGAGGGTTATGAGCAAGATCGATAGCACGCAGGGGGGATCGGGCTGATCCCTGGC
TTGCGCATTCTACCTCTCCGCCCGGCTGAGCGCCCACAC
Found at i:16328242 original size:26 final size:25
Alignment explanation
Indices: 16328212--16328263 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
16328202 GTTGGCTTAG
* *
16328212 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCAATCCA-GTCTAA
*
16328238 GCATACGAAGTTTAATCCAGTCTAA
1 GCATACGAAGTTCAATCCAGTCTAA
16328263 G
1 G
16328264 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (25 bp):
GCATACGAAGTTCAATCCAGTCTAA
Found at i:16328755 original size:26 final size:26
Alignment explanation
Indices: 16328725--16328776 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16328715 TTGACTTAGA
16328725 CATACAGAGTTCATT-CCATGTCTAAG
1 CATACAGAGTTCATTACCA-GTCTAAG
*
16328751 CATACGGAGTTCATTACCAGTCTAAG
1 CATACAGAGTTCATTACCAGTCTAAG
16328777 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATTACCAGTCTAAG
Found at i:16328964 original size:26 final size:26
Alignment explanation
Indices: 16328934--16328986 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16328924 GTTGACTTAG
16328934 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16328960 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16328986 G
1 G
16328987 TCTGACCAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16329299 original size:159 final size:156
Alignment explanation
Indices: 16328960--16329302 Score: 361
Period size: 159 Copynumber: 2.2 Consensus size: 156
16328950 CCCAGTCTAA
* ** * *
16328960 GCATACGGAGTTCATTCCCAGTCTAAG-TCTGACCAGATCGAGGGTTGCTGCAATAGGATCGACA
1 GCATACGGAGTTCA-TCCCAGTCTAAGCCCCAACCAGATCGAGGGTTGCTGCAACAGGATAGACA
* * *
16329024 GCACAAGAGGGGACCGAGTCGATCCTCGACTTACGCATTCTACCTCTCTGGCCGGTTGAGCGCCC
65 GCACAAGAGGGGACCGAGTCGATCCCCGACTTACGCATTCTACCTCTCTGGCCGGCTGAACGCCC
* * *
16329089 GTACGCCTGTTTCATGTGTTGGCTTAG
130 GCACGCCTGTTTCATGGGTTGACTTAG
** * * * * * *
16329116 GCATTGGGAGTCCATTCCATGTCTAAGCCCCAACCAGATCGAGGGTTG-TGGTAGCGGGATAGGC
1 GCATACGGAGTTCATCCCA-GTCTAAGCCCCAACCAGATCGAGGGTTGCT-GCAACAGGATAGAC
* * *
16329180 AGCACACAGAAGGGGACCGGGTCGATCCCCGACTTACGCATTCTGCCTCT-TCGGCCGGCTGAAT
64 AGCACA-AG-AGGGGACCGAGTCGATCCCCGACTTACGCATTCTACCTCTCT-GGCCGGCTGAAC
**
16329244 GCTTGCACG-CTCGTTTCATGGGTTGACTTAG
126 GCCCGCACGCCT-GTTTCATGGGTTGACTTAG
*
16329275 GCATACGGACTTCATCCCCAGTCTAAGC
1 GCATACGGAGTTCAT-CCCAGTCTAAGC
16329303 ATACGGAGTT
Statistics
Matches: 150, Mismatches: 29, Indels: 13
0.78 0.15 0.07
Matches are distributed among these distances:
155 4 0.03
156 19 0.13
157 31 0.21
158 5 0.03
159 88 0.59
160 3 0.02
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.24
Consensus pattern (156 bp):
GCATACGGAGTTCATCCCAGTCTAAGCCCCAACCAGATCGAGGGTTGCTGCAACAGGATAGACAG
CACAAGAGGGGACCGAGTCGATCCCCGACTTACGCATTCTACCTCTCTGGCCGGCTGAACGCCCG
CACGCCTGTTTCATGGGTTGACTTAG
Found at i:16329305 original size:26 final size:26
Alignment explanation
Indices: 16329275--16329334 Score: 79
Period size: 26 Copynumber: 2.4 Consensus size: 26
16329265 GTTGACTTAG
16329275 GCATACGGACTTCATCCCCAGTCTAA
1 GCATACGGACTTCATCCCCAGTCTAA
* * *
16329301 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGACTTCATCCCCAGTCTAA
16329327 G-AT-CGGAC
1 GCATACGGAC
16329335 CAGACCAAGG
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
24 4 0.13
25 2 0.07
26 24 0.80
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (26 bp):
GCATACGGACTTCATCCCCAGTCTAA
Found at i:16330984 original size:26 final size:26
Alignment explanation
Indices: 16330948--16331000 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16330938 GTTAGCTTAG
16330948 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
16330974 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16331000 G
1 G
16331001 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16332276 original size:26 final size:26
Alignment explanation
Indices: 16332246--16332298 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16332236 GTTGACTTAT
*
16332246 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
16332272 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16332298 G
1 G
16332299 ATCGAATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16332811 original size:26 final size:26
Alignment explanation
Indices: 16332760--16332812 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16332750 GTTGACTTAG
*
16332760 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGACTAA
* * *
16332786 GCATACGGAGTTCATTCCTAGACTAA
1 GCATACAGAGTTCATCCCCAGACTAA
16332812 G
1 G
16332813 ATCAAATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGACTAA
Found at i:16333836 original size:26 final size:26
Alignment explanation
Indices: 16333800--16333852 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16333790 GTTGACTTAG
16333800 GCATACAGAGTTCATCCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAGTCTAA
*
16333826 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAGTCTAA
16333852 G
1 G
16333853 ATCTAACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAGTCTAA
Found at i:16334013 original size:26 final size:26
Alignment explanation
Indices: 16333984--16334036 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16333974 GTTGACTTAG
16333984 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16334010 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16334036 G
1 G
16334037 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16334067 original size:184 final size:184
Alignment explanation
Indices: 16333771--16334221 Score: 618
Period size: 184 Copynumber: 2.5 Consensus size: 184
16333761 AGCTGAATGT
* * *
16333771 CCGCACGCTCGTTTCGTGAGTTGACTTAGGCATACAGAGTTCATCCCTAGTCTAAGCATACAGAG
1 CCGCACGCTCGTTTCGTGAGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAG
* * * ** * * * * *
16333836 TTCATTCCTAGTCTAAGATCTAACTGGACTGACGGTTGCGGCAGCAGGATCGACAGCGCGTAGGG
66 TTCATTCCCAGTCTAAGATCGAACCGGACCAAAGGTTACGACAGCAGGATCGACAGCACGCAGGG
* * * **
16333901 GGGACCGGGCCGATCCTCGACTTACGCATTCTGCCTCTCCGG-CTGGCTTTGCAC
131 GGGACCGGGCCGATCCCCGACTTACACATTCTACCTCTCCGGTC-GGCTGAGCAC
* * *
16333955 CCGCACGGTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAG
1 CCGCACGCTCGTTTCGTGAGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAG
*
16334020 TTCATTCCCAGTCTAAGATCGGACCGGACCAAAGGTTACGACAGCAGGATCGACAGCACGCAGGG
66 TTCATTCCCAGTCTAAGATCGAACCGGACCAAAGGTTACGACAGCAGGATCGACAGCACGCAGGG
* *
16334085 GGGACCGGGCCGATCCCCGACTTGCACATTCTACCTCTCCGGTCGGCTGAGCGC
131 GGGACCGGGCCGATCCCCGACTTACACATTCTACCTCTCCGGTCGGCTGAGCAC
* * * *
16334139 CCGCACGCTCGTTTCTTGAGTCGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACGGA
1 CCGCACGCTCGTTTCGTGAGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACGGA
16334203 GTTCATTCCCAGTCTAAGA
65 GTTCATTCCCAGTCTAAGA
16334222 GTTTGTGCCA
Statistics
Matches: 234, Mismatches: 31, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
183 3 0.01
184 230 0.98
185 1 0.00
ACGTcount: A:0.21, C:0.29, G:0.27, T:0.23
Consensus pattern (184 bp):
CCGCACGCTCGTTTCGTGAGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAG
TTCATTCCCAGTCTAAGATCGAACCGGACCAAAGGTTACGACAGCAGGATCGACAGCACGCAGGG
GGGACCGGGCCGATCCCCGACTTACACATTCTACCTCTCCGGTCGGCTGAGCAC
Found at i:16334204 original size:26 final size:26
Alignment explanation
Indices: 16334168--16334220 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16334158 GTCGGCTTAG
16334168 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16334194 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16334220 G
1 G
16334221 AGTTTGTGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16340560 original size:26 final size:26
Alignment explanation
Indices: 16340524--16340576 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
16340514 GTTGGCTTAG
16340524 GCATACGGAGTTC-ATT-CCATGTCTAA
1 GCATACGGAG-TCAATTCCCA-GTCTAA
16340550 GCATACGGAGTCAATTCCCAGTCTAA
1 GCATACGGAGTCAATTCCCAGTCTAA
16340576 G
1 G
16340577 ATCAAACTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 2 0.08
26 20 0.80
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTCAATTCCCAGTCTAA
Found at i:16341098 original size:26 final size:26
Alignment explanation
Indices: 16341062--16341114 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16341052 GTTGGCTTAG
*
16341062 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
16341088 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16341114 G
1 G
16341115 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16342277 original size:158 final size:154
Alignment explanation
Indices: 16341811--16342312 Score: 461
Period size: 158 Copynumber: 3.2 Consensus size: 154
16341801 CCCAGTCTAA
* * * * * * *
16341811 GCATACGGAGTTCATT-CTTAGTCTAAGATCAGATCGGACCATGGGTTGCGACAGTAGGATCTAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAGACCAGACGA-GGGTTGTGACAGTAAGATCGAC
** * * * *
16341875 AGCACGCAGAGGGGACAAAGCCAATCCTCAGCTTGCGCATTCTGCCTCTCTGGTCGGTTGAGTGC
64 AGCACGCAG-GGGGACAGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTC-CGTCGGCTGAGTGC
** * * *
16341940 TTGCACGCCTGTTTCATGGGTTGGCTTAA
127 CCGCATGCTTGTTTCATGGGTT-GCTTAG
* ** * ** *
16341969 GCATAAGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGCAACAAGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCAGA-CGAGGGTTGTGACAGTAAGATCGAC
* * * * * * * **
16342033 AACACGCAGAGGGGGACCGGACCGATCCTCGGCTTGCGGATTATGCCTCTCCGACCGGCTCAACG
64 AGCACGC--AGGGGGACAGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCG-TCGGCTGAGTG
* * *
16342098 CCCGAATGCTCGTTTCGTGGGTTGACTTAG
126 CCCGCATGCTTGTTTCATGGGTTG-CTTAG
*
16342128 GCATACGGAGTTCATTCC-TAGTCTAAGATCGGACCAGATCGAGGGTTGTGACAGTAAGATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAGACCAGA-CGAGGGTTGTGACAGTAAGATCGAC
* *
16342192 AGCATGCACGGGGGACTGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCAGTCGGCTGAGTGC
64 AGCACGCA-GGGGGACAGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCC-GTCGGCTGAGTGC
*
16342257 CCGCATGCTTGTTTCTTGGGTTTGCTTAG
127 CCGCATGCTTGTTTCATGGG-TTGCTTAG
*
16342286 GCATACAGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
16342313 CATATGGAGT
Statistics
Matches: 271, Mismatches: 60, Indels: 26
0.76 0.17 0.07
Matches are distributed among these distances:
157 1 0.00
158 143 0.53
159 125 0.46
160 2 0.01
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (154 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCAGACGAGGGTTGTGACAGTAAGATCGACAG
CACGCAGGGGGACAGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCGTCGGCTGAGTGCCCGC
ATGCTTGTTTCATGGGTTGCTTAG
Found at i:16343510 original size:158 final size:155
Alignment explanation
Indices: 16343044--16343545 Score: 454
Period size: 158 Copynumber: 3.2 Consensus size: 155
16343034 CCCAGTCTAA
* * * * * * *
16343044 GCATACGGAGTTCATT-CTTAGTCTAAGATCAGATCGGACCATGGGTTGCGACAGTAGGATCTAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAGACCAGACGA-GGGTTGTGACAGTAAGATCGAC
* ** * * * * *
16343108 AGCACGTAGAGGGGACAAAGCCAATCCCCAGCTTGCGCATTCTGCCTCTCTAGTCGGTTGAGTGC
64 AGCACGCAG-GGGGACAGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCAGTCGGCTGAGTGC
** * *
16343173 TTGCATGCCTGTTTCATGGGTTGGCTTAA
128 CCGCATGCTTGTTTCATGGGTT-GCTTAG
* ** * ** *
16343202 GCATAAGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGCAACAAGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAAG-ATCAGACCAGA-CGAGGGTTGTGACAGTAAGATCGAC
* * * * * * * **
16343266 AACACGCAGAGGGGGACCGGACCGATCCTCGGCTTGCGGATTATGCCTCTCC-GACCGGCTCAAC
64 AGCACGC--AGGGGGACAGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCAG-TCGGCTGAGT
* * *
16343330 GCCCGAATGCTCGTTTCGTGGGTTGACTTAG
126 GCCCGCATGCTTGTTTCATGGGTTG-CTTAG
*
16343361 GCATACGGAGTTCATTCC-TAGTCTAAGATCGGACCAGATCGAGGGTTGTGACAGTAAGATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCAGACCAGA-CGAGGGTTGTGACAGTAAGATCGAC
* * *
16343425 AGCATGCACGGGGGACTGGGCCGGTCCTCGGCTTGCGCATTCTGCCTCTCCAGTCGGCTGAGTGC
64 AGCACGCA-GGGGGACAGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCAGTCGGCTGAGTGC
*
16343490 CCGCATGCTTGTTTCTTGGGTTTGCTTAG
128 CCGCATGCTTGTTTCATGGG-TTGCTTAG
*
16343519 GCATACAGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
16343546 CATATGGAGT
Statistics
Matches: 269, Mismatches: 62, Indels: 26
0.75 0.17 0.07
Matches are distributed among these distances:
157 1 0.00
158 141 0.52
159 125 0.46
160 2 0.01
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (155 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCAGACCAGACGAGGGTTGTGACAGTAAGATCGACAG
CACGCAGGGGGACAGGGCCGATCCTCGGCTTGCGCATTCTGCCTCTCCAGTCGGCTGAGTGCCCG
CATGCTTGTTTCATGGGTTGCTTAG
Found at i:16344260 original size:26 final size:26
Alignment explanation
Indices: 16344230--16344279 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
16344220 GTTGACTTAG
*
16344230 GCATACGGAGTTCA-TCCTCAGTCTAA
1 GCATACGAAGTTCATTCCT-AGTCTAA
16344256 GCATACGAAGTTCATTCCTAGTCT
1 GCATACGAAGTTCATTCCTAGTCT
16344280 GAGATCGGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:16344775 original size:26 final size:26
Alignment explanation
Indices: 16344725--16344777 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16344715 GATGGCTTAG
*
16344725 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATCTCTAA
*
16344751 GCATACGGAGTTCATTCCCA-CTCTAA
1 GCATACAGAGTTCATT-CCATCTCTAA
16344777 G
1 G
16344778 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATCTCTAA
Found at i:16344964 original size:26 final size:26
Alignment explanation
Indices: 16344935--16344987 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16344925 GTTGACTTAG
*
16344935 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
16344961 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16344987 G
1 G
16344988 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16346370 original size:26 final size:25
Alignment explanation
Indices: 16346340--16346391 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
16346330 GTTGGCTTAG
*
16346340 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTACA-GTCTAA
**
16346366 GCATATGGAGTTCATTACAGTCTAA
1 GCATACAGAGTTCATTACAGTCTAA
16346391 G
1 G
16346392 ATCTTGATCC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (25 bp):
GCATACAGAGTTCATTACAGTCTAA
Found at i:16347087 original size:26 final size:26
Alignment explanation
Indices: 16347051--16347103 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16347041 GTTGCCTTAG
*
16347051 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCACCAGTCTAA
* *
16347077 GCATATGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTCATCACCAGTCTAA
16347103 G
1 G
16347104 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCACCAGTCTAA
Found at i:16347577 original size:159 final size:158
Alignment explanation
Indices: 16347176--16347580 Score: 390
Period size: 158 Copynumber: 2.6 Consensus size: 158
16347166 GCTTGGCTTG
* * * * * *
16347176 CGCATTCTGCCTCTCCAACCGACTGAGCGCCCGCATGCCCGTTTTGTGGTTTGGCTTAGGCGTAG
1 CGCATTCTGCCTCTCCGACCG-CTGAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATAC
* * * * * *
16347241 GGAGTTCATTCCATGTCTAAGCCCCAGCTAGATCGATGGTTGTGGTAGCGAGACCGACAGCGCGC
65 GGAGTTCATTCCATGTCTAAGCACCAGCCAGATCGAGGGTTGAGGTAGCGAGACCGAAAGCACGC
** ** **
16347306 AGAGGGGGACCGGGCGGATCCCTTGCTTG
130 AGAGGGGGACCGACCGGATCCCCGGCTCA
* * * * ** * * *
16347335 C-CTATTATGCCTCTCCGGCCTGCTCAGTGCCCG-AAACTCGTTTCGTGGGTTGACTTTGGTATA
1 CGC-ATTCTGCCTCTCCGACC-GCTGAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATA
* * *
16347398 CGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGATCGAGGGTTGAGGTAGC-AGGATCGAAAGC
64 CGGAGTTCATT-CCATGTCTAAGCACCAG-CCAGATCGAGGGTTGAGGTAGCGA-GACCGAAAGC
* *
16347460 ACGCTGGGGGGGACCGAACCGG-TCCCCGGCTCA
126 ACGCAGAGGGGGACCG-ACCGGATCCCCGGCTCA
*
16347493 CGCATTCTGCCTCTCCGACCAGCTGAGCGCCTGCATGCTCGTTTCGTGGGTTGGCTTAGGCATAC
1 CGCATTCTGCCTCTCCGACC-GCTGAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATAC
*
16347558 GAAGTTCATTCCATGTCTAAGCA
65 GGAGTTCATTCCATGTCTAAGCA
16347581 TATGGAGTTC
Statistics
Matches: 192, Mismatches: 44, Indels: 19
0.75 0.17 0.07
Matches are distributed among these distances:
157 4 0.02
158 113 0.59
159 73 0.38
160 2 0.01
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (158 bp):
CGCATTCTGCCTCTCCGACCGCTGAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACG
GAGTTCATTCCATGTCTAAGCACCAGCCAGATCGAGGGTTGAGGTAGCGAGACCGAAAGCACGCA
GAGGGGGACCGACCGGATCCCCGGCTCA
Found at i:16347581 original size:26 final size:26
Alignment explanation
Indices: 16347552--16347604 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16347542 GTTGGCTTAG
16347552 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
* *
16347578 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16347604 G
1 G
16347605 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16347715 original size:184 final size:184
Alignment explanation
Indices: 16347395--16347947 Score: 628
Period size: 184 Copynumber: 3.0 Consensus size: 184
16347385 TGACTTTGGT
* * * * *
16347395 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGAGGTAGCAGGATCGAAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCAGGATCGAAAGC
* ** * * * * *
16347460 ACGCTGGGGGGGACCGAACCGGTCCCCGGCTCACGCATTCTGCCTCTC-CGACCAGCTGAGCGCC
66 ACGC-AGGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCTGGTCGA-CTGAGCGCC
* *
16347524 TGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGC
129 CGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
* * * **
16347580 ATATGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGACAGTAGGATCGGCAGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCAGGATCGAAAGC
* * *
16347645 ATGCAGGGGGGACTGGGCCGATCCCCGACTTACGCATTCTGCCTCTCTGGTCGACTGAGCGCCCG
66 ACGCAGGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCTGGTCGACTGAGCGCCCG
* * *
16347710 CATGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATCCCCA-GTCTAAGC
131 CATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGC
* * * *
16347764 ATACGGAGTTCATTCCCAGTCTAAGAGCGGTCTGGACTGAGGGTTGCGGCAGCA-GATCGATAGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCAGGATCGAAAGC
** * * * * * * *
16347828 ACATAGGGGGGGACCAGGCTGATCCCCGGTTTGCGTATTCTGCCTCT-TCGGTCGGCTGAGCACC
66 ACGCA-GGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCT-GGTCGACTGAGCGCC
* * * * * *
16347892 CGCATGCCCGTTTCATGGGTTGGATTAGGCATAGGGATTTCATTCCATGCCTAAGC
129 CGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
16347948 CCCAGTCAGA
Statistics
Matches: 309, Mismatches: 54, Indels: 11
0.83 0.14 0.03
Matches are distributed among these distances:
183 14 0.05
184 231 0.75
185 64 0.21
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (184 bp):
ATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCAGGATCGAAAGC
ACGCAGGGGGGACCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCTGGTCGACTGAGCGCCCG
CATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
Found at i:16347765 original size:26 final size:26
Alignment explanation
Indices: 16347736--16347788 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16347726 GTTGACTTAG
*
16347736 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16347762 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16347788 G
1 G
16347789 AGCGGTCTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16348130 original size:26 final size:26
Alignment explanation
Indices: 16348079--16348131 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16348069 GTTGGCTTAG
**
16348079 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATACCTAA
16348105 GCATACGGAGTTCATTCCCA-ACCTAA
1 GCATACGGAGTTCATT-CCATACCTAA
16348131 G
1 G
16348132 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATACCTAA
Found at i:16349772 original size:26 final size:26
Alignment explanation
Indices: 16349742--16349794 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16349732 GTTGACTTAG
16349742 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
16349768 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16349794 G
1 G
16349795 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16349939 original size:184 final size:187
Alignment explanation
Indices: 16349533--16349953 Score: 487
Period size: 184 Copynumber: 2.3 Consensus size: 187
16349523 CTCCCAAACG
* * * *
16349533 CTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAGGCATATAGAGTTCATTC
1 CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTC
** * * *
16349598 CTAGTCTAAGATCAGATTGGACCAACAGGGTTGCGACACCAGGATCGGTAGCATGGATGGAGGGA
66 CTAGTCTAAGATCAGATCAGACCAACAGGGTTACGACACCAGGATCGGTAGCACGGATAGAGGGA
** * * * * * *
16349663 TTGGGCCCATCCCCGGCTTACTCATTCTGCCTTTCCGGTTGATTGAGCGCCCGCACG
131 CCGGGCCAATCCCCGGCTTACTCATTCTACCTTTCCGGTCGACTGAGCACCCGCACA
* * * *
16349720 CTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCA-GTCTAAGCATACGGAGTTCATT
1 CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACAGAGTTCATT
* ** *
16349784 CCTAGTCTAAGATCAGATCAGACCGA-A-GGTTACGGTTA-CAGGATCGGTAGCACGTA-AGAGG
65 CCTAGTCTAAGATCAGATCAGACCAACAGGGTTAC-GACACCAGGATCGGTAGCACGGATAGAGG
* * *
16349845 GGCCGGGCCAATCCTCGGCTTA-TGTATTCTACCTCTT-CGGTCGACTGAGCACCCGCACA
129 GACCGGGCCAATCCCCGGCTTACT-CATTCTACCT-TTCCGGTCGACTGAGCACCCGCACA
* *
16349904 CTCGTTTTATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
1 CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
16349954 CCTAGTCAGA
Statistics
Matches: 196, Mismatches: 33, Indels: 13
0.81 0.14 0.05
Matches are distributed among these distances:
183 4 0.02
184 88 0.45
185 23 0.12
186 3 0.02
187 75 0.38
188 3 0.02
ACGTcount: A:0.21, C:0.24, G:0.27, T:0.28
Consensus pattern (187 bp):
CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATTC
CTAGTCTAAGATCAGATCAGACCAACAGGGTTACGACACCAGGATCGGTAGCACGGATAGAGGGA
CCGGGCCAATCCCCGGCTTACTCATTCTACCTTTCCGGTCGACTGAGCACCCGCACA
Done.