Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19866354
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 74000 characters in sequence are not A, C, G, or T
File 76 of 100
Found at i:16350124 original size:26 final size:26
Alignment explanation
Indices: 16350088--16350137 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
16350078 GGCTTAGGCA
16350088 TACGAAGTTCATT-CCATGTCTAAGTG
1 TACGAAGTTCATTCCCA-GTCTAAGTG
*
16350114 TACGGAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
16350138 AGTTTGAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.32
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGTG
Found at i:16352630 original size:26 final size:26
Alignment explanation
Indices: 16352594--16352646 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16352584 GTTGACTCAG
16352594 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
*
16352620 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
16352646 G
1 G
16352647 ATTGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:16353326 original size:26 final size:26
Alignment explanation
Indices: 16353289--16353341 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16353279 GTTGACTTAG
*
16353289 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
16353315 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
16353341 G
1 G
16353342 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:16353330 original size:195 final size:196
Alignment explanation
Indices: 16352998--16353364 Score: 472
Period size: 195 Copynumber: 1.9 Consensus size: 196
16352988 AGCAAGATTG
* * * * * *
16352998 ATAGCACGTAGGGGGGACTGGGTCGGTCCTCGGTTTGAGCATTCTGTATCTCTGATAGGCTGTGC
1 ATAGCACGCAGGGGGGACTAGGTCGATCCTCGGCTTGAGCATTCTGTATCTCCGATAGGCTGAGC
* * * * *
16353063 ACCCGCACGTTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGG
66 ACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAAGCATACGA
** * *
16353128 AGTTCATTCCCA-TCTAAGATTGGATCAGATCGAGGGTTACGGTAGCAGAACTAGCAATAGGATC
131 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGAACTAGCAATAGGATC
16353192 T
196 T
* * * *
16353193 ATAGCACGCAGGGGGGA-TCAGGTCGATCCTCGGCTT-ACGCATTCTGTCTCTCCGTTCGGTTGA
1 ATAGCACGCAGGGGGGACT-AGGTCGATCCTCGGCTTGA-GCATTCTGTATCTCCGATAGGCTGA
* **
16353256 GCACCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATA
64 GCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCAT-CCCATGTCTAAGCATA
*
16353320 CGAAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTACG
128 CGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACG
16353365 ACAGCAGGAT
Statistics
Matches: 145, Mismatches: 23, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
194 2 0.01
195 115 0.79
196 28 0.19
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.27
Consensus pattern (196 bp):
ATAGCACGCAGGGGGGACTAGGTCGATCCTCGGCTTGAGCATTCTGTATCTCCGATAGGCTGAGC
ACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAAGCATACGA
AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGAACTAGCAATAGGATC
T
Found at i:16353515 original size:26 final size:26
Alignment explanation
Indices: 16353486--16353538 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16353476 CCAGTCTGAT
*
16353486 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
16353512 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
16353538 C
1 C
16353539 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:16354055 original size:157 final size:158
Alignment explanation
Indices: 16353707--16354148 Score: 546
Period size: 157 Copynumber: 2.8 Consensus size: 158
16353697 AACTCCGTAT
* * * * * * *
16353707 GCTTAGACATGGGATGAACTCCGTATGCTTAAGCCAACCCACAAAACGAGCGTGCGGGCTCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAG
* * * * * * * *
16353772 CTGGTCGGAGAGGCATAATGCACAAGCTGAGGATCGGCCC-ATTCCCCCTCTACATGCTGTTGGT
66 CCGATCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGA-TCCCCC-CTACATGCTGTCGGT
*
16353836 CCTGCTGCCACAACCCTCGGTCCGGTTGGG
129 CCTACTGCCACAACCCTCGGTCCGGTTGGG
* * * * * *
16353866 GCTTAGACATTGAATGAACTCCTTATGTCTAAGCCAACCCAGGAAATGGGCGTACAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAG
* * *
16353931 CCGATCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCTCCTGCATGCTGTCGGT-C
66 CCGATCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTACATGCTGTCGGTCC
*
16353995 TACTGCCACAACCCTCGGTCTGGTTGGG
131 TACTGCCACAACCCTCGGTCCGGTTGGG
* * * *
16354023 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACTCACGAAATGGGCATGTGGGGGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAG
* * * *
16354088 CCGATTGGAGAGGTAGAATGTGCAAGCCGGGGATCAGCCCGATCCCCCCTACGTGCTGTCG
66 CCGATCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTACATGCTGTCG
16354149 ATCTTGCTAC
Statistics
Matches: 240, Mismatches: 42, Indels: 4
0.84 0.15 0.01
Matches are distributed among these distances:
157 136 0.57
158 13 0.05
159 91 0.38
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAG
CCGATCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTACATGCTGTCGGTCC
TACTGCCACAACCCTCGGTCCGGTTGGG
Found at i:16354186 original size:157 final size:156
Alignment explanation
Indices: 16353708--16354200 Score: 434
Period size: 157 Copynumber: 3.1 Consensus size: 156
16353698 ACTCCGTATG
* * * * * * * * * *
16353708 CTTAGACATGGGATGAACTCCGTATGCTTAAGCCAACCCACAAAACGAGCGTGCGGGCTCTCAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCATACAGGCGCTCAGC
* * * * * * * * * *
16353773 TGGTCGGAGAGGCATAATGCACAAGCTGAGGATCGGCCC-ATTCCCCCTCTACATGCTGTTGGTC
66 CGATCGGAGAGGTAGAATGCGCAAGCCGGGGATCAGCCCGA-TCCCCC-CTACATGCTGTCGAT-
* * * * *
16353837 CTGCTGCCACAACCCTCGGTCCGGTTGGGG
128 CTACTACCACAACCCTCGATCCGATT-GGA
* * * * *
16353867 CTTAGACATTGAATGAACTCCTTATGTCTAAGCCAACCCAGGAAATGGGCGTACAGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCATACAGGCGCTCAGC
* * * * *
16353932 CGATCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCTCCTGCATGCTGTCGGTCTA
66 CGATCGGAGAGGTAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCTACATGCTGTCGATCTA
* * * * *
16353997 CTGCCACAACCCTCGGTCTGGTTGGGG
131 CTACCACAACCCTCGATCCGATT-GGA
* *** *
16354024 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACTCACGAAATGGGCATGTGGGGGCTCAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCATACAGGCGCTCAGC
* * *
16354089 CGATTGGAGAGGTAGAATGTGCAAGCCGGGGATCAGCCCGATCCCCCCTACGTGCTGTCGATCTT
66 CGATCGGAGAGGTAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCTACATGCTGTCGATC-T
* *
16354154 GCTACCGCAACCCTCGATCCGATCT-GA
130 ACTACCACAACCCTCGATCCGAT-TGGA
*
16354181 TTTAGAC-TGGGAATGAACTC
1 CTTAGACAT-GGAATGAACTC
16354201 TATATGCTTA
Statistics
Matches: 279, Mismatches: 51, Indels: 10
0.82 0.15 0.03
Matches are distributed among these distances:
156 1 0.00
157 156 0.56
158 31 0.11
159 91 0.33
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCATACAGGCGCTCAGC
CGATCGGAGAGGTAGAATGCGCAAGCCGGGGATCAGCCCGATCCCCCCTACATGCTGTCGATCTA
CTACCACAACCCTCGATCCGATTGGA
Found at i:16354232 original size:26 final size:26
Alignment explanation
Indices: 16354182--16354233 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16354172 CCGATCTGAT
*
16354182 TTAGACTGGGAATGAACTCTATATGC
1 TTAGACTGGGAATGAACTCCATATGC
* *
16354208 TTAGACTGGGGATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCATATGC
16354234 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:16354941 original size:26 final size:26
Alignment explanation
Indices: 16354891--16354943 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16354881 TCGGTCTGAT
*
16354891 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
* *
16354917 CTTAGACTGGGGATGAACTTAGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
16354943 C
1 C
16354944 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATG
Found at i:16355219 original size:343 final size:337
Alignment explanation
Indices: 16354574--16355622 Score: 1005
Period size: 343 Copynumber: 3.1 Consensus size: 337
16354564 CTGATCTGAT
* * * * *
16354574 CTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCATACGGGCGCTAAAC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTACAGGCGCTAAGC
* * * * * ** *
16354639 CGGTCGAAGAGGTAAAATGCGTAAGCCGGGGATC-AGCCCGGTCCCCTTCTGCGTGCTGTCAGTC
66 C-GCCGAAGAGGCATAATGCGCAAGTC-GGGATCGA-CTTGGTCCCCTTCTGCGTGCTGTCA-TT
*
16354703 CCGCTGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
127 CCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * * * * *
16354768 ACCCACGAAACGGGTGTGCGGGGGCTCAGTCGACCAGAGAGGTAGAATGCGCAAGCCGAGGATCG
192 ACCCACGAAACGGGCGTGCTGGCGCTCAGCCGACCAGAGAGGCAGAATGCGCAAG-CTAGGATCG
* * * *
16354833 ACCTGGTCCCCCCTGTGTGCTGCTGATCTTGCTGCCT-CAACCCTCGATTCGGTCTGATCTTAGA
256 ACCCGGTCCCCCCTGCGTGCTTC-GATCTTGCT-ACTGCAACCCTCGA-TCGGTCTGATCTTAGA
16354897 CTGGGAATGAACTCCGTATG
318 CTGGGAATGAACTCCGTATG
* * * *
16354917 CTTAGACTGGGGATGAACTTAGTATGCCTAAGTCAACCCACGAAACGAGTGTACAGGCGCTCAGC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTACAGGCGCTAAGC
*
16354982 CGACC-AGAGAGGCATAATGCGCAAGTCAGGGATCGACTTGGTCCCCTTCTGTGTGCTGTCGATT
66 CG-CCGA-AGAGGCATAATGCGCAAGTC-GGGATCGACTTGGTCCCCTTCTGCGTGCTGTC-ATT
*
16355046 CCGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
127 CCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * * * * *
16355111 ACCCATGAAATGGGCGTGCTGGCGCTCAGCCGATCGGAGATGCAGAATGCGCAAGCTAGGAATTG
192 ACCCACGAAACGGGCGTGCTGGCGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGCTAGG-ATCG
* * * *
16355176 GCCCGATCCCCCCTGCGTGCTATCGATCCTACTACTGCAACCCTC-A---GTC----C-----C-
256 ACCCGGTCCCCCCTGCGTGCT-TCGATCTTGCTACTGCAACCCTCGATCGGTCTGATCTTAGACT
16355227 ----AT----T-CG-AT-
320 GGGAATGAACTCCGTATG
* * * * * *
16355234 CTTAGACTGGGAATGAAATTCGTTTGCCTAAGTCAACCCACAAAACGAGCGTGCAGGCGTTGAGC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTACAGGCGCTAAGC
* * ** *
16355299 CTGCCGAAGAGGCATAATGCGCAAGTCGGCGATAGACTTGGTCCCCCTCTGCGTGCTACCAATCT
66 C-GCCGAAGAGGCATAATGCGCAAGTCGG-GATCGACTTGGTCCCCTTCTGCGTGCTGTCATTC-
*
16355364 CGCTGCCACAACCCTCGGTCCGGA-TGGGGCTTAGACATGGAATGAACTCCCTATCCCTAAGCCA
128 CGCTGCCACAACCCTCGGTCC-GACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
* * * * *
16355428 ACCCACAAAACGGGCGTG-TGGGCACTCA-CCCAGCC-GAGAGGCAGAAT-CTGTAAGCTGGGGA
192 ACCCACGAAACGGGCGTGCT-GGCGCTCAGCCGA-CCAGAGAGGCAGAATGC-GCAAGCT-AGGA
* * * * * * * *
16355489 TCGATCCGGT-CCCCCTACGTGCTGTCGATCTTGCTGCCGTAACCCTCGGTCCGATTTGATCTTA
253 TCGACCCGGTCCCCCCTGCGTGCT-TCGATCTTGCTACTGCAACCCTCGAT-CGGTCTGATCTTA
* * *
16355553 GATTGGGAATGAACACCATATG
316 GACTGGGAATGAACTCCGTATG
* * *
16355575 CTTAGACTGGGGATGAACTTCGTATGCTTAAGTCAACCCATGAAACGA
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGA
16355623 ACGTGCGGGC
Statistics
Matches: 574, Mismatches: 90, Indels: 86
0.77 0.12 0.11
Matches are distributed among these distances:
315 31 0.05
316 33 0.06
317 188 0.33
318 6 0.01
319 2 0.00
320 2 0.00
324 3 0.01
329 1 0.00
334 3 0.01
338 3 0.01
339 1 0.00
340 2 0.00
341 42 0.07
342 9 0.02
343 245 0.43
344 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (337 bp):
CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTACAGGCGCTAAGC
CGCCGAAGAGGCATAATGCGCAAGTCGGGATCGACTTGGTCCCCTTCTGCGTGCTGTCATTCCGC
TGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
ACGAAACGGGCGTGCTGGCGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGCTAGGATCGACCCG
GTCCCCCCTGCGTGCTTCGATCTTGCTACTGCAACCCTCGATCGGTCTGATCTTAGACTGGGAAT
GAACTCCGTATG
Found at i:16355286 original size:158 final size:159
Alignment explanation
Indices: 16354916--16355325 Score: 382
Period size: 158 Copynumber: 2.6 Consensus size: 159
16354906 AACTCCGTAT
* * * *
16354916 GCTTAGACTGGGGATGAACTTAGTATGCCTAAGTCAACCCACGAAACGAGTGTACAGGCGCTCAG
1 GCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAG
* * ** * * * *
16354981 CCGACCAGAGAGGCATAATGCGCAAGTCAGGGATCGACTTGGTCCCCTTCTGTGTGCTGTCGATT
66 CCGACCAGAGAGGCAGAATGCGCAAGTCAGGAATCGACCCGATCCCCTCCTGCGTGCTATCGATT
* * * * *
16355046 CCGCTGCCACAACCCTCAGTCCGACTGGG
131 CCACTACCACAACCCTCAGTCCCACTCGA
* * * * * * *
16355075 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCTGGCGCTCA
1 GCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCA
* * * * *
16355139 GCCGATCGGAGATGCAGAATGCGCAAG-CTAGGAATTGGCCCGATCCCC-CCTGCGTGCTATCGA
65 GCCGACCAGAGAGGCAGAATGCGCAAGTC-AGGAATCGACCCGATCCCCTCCTGCGTGCTATCGA
** *
16355202 -TCCTACTACTGCAACCCTCAGTCCCATTCGA
129 TTCC-ACTACCACAACCCTCAGTCCCACTCGA
* * * * * *
16355233 TCTTAGACTGGGAATGAAATTCGTTTGCCTAAGTCAACCCACAAAACGAGCGTGCAGGCGTTGAG
1 GCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAG
*
16355298 CCTG-CC-GAAGAGGCATAATGCGCAAGTC
66 CC-GACCAG-AGAGGCAGAATGCGCAAGTC
16355326 GGCGATAGAC
Statistics
Matches: 196, Mismatches: 48, Indels: 14
0.76 0.19 0.05
Matches are distributed among these distances:
157 5 0.03
158 101 0.52
159 89 0.45
160 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (159 bp):
GCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAG
CCGACCAGAGAGGCAGAATGCGCAAGTCAGGAATCGACCCGATCCCCTCCTGCGTGCTATCGATT
CCACTACCACAACCCTCAGTCCCACTCGA
Found at i:16355423 original size:159 final size:158
Alignment explanation
Indices: 16354939--16355445 Score: 479
Period size: 159 Copynumber: 3.2 Consensus size: 158
16354929 ATGAACTTAG
* * * *
16354939 TATGCCTAAGTCAACCCACGAAACGAGTGTACAGGCGCTCAGCCGACC-AGAGAGGCATAATGCG
1 TATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCGCTCAGCCGACCGA-AGAGGCATAATGCG
* * * *
16355003 CAAGTCAGGGATCGACTTGGTCCCCTTCTGTGTGCTGTCGAT-TCCGCTGCCACAACCCTCAGTC
65 CAAGTC-GGGATAGACTTGGTCCCCCTCTGCGTGCTATCGATCT-CGCTGCCACAACCCTCAGTC
16355067 CGACTGGGGCTTAGACATGGAATGAACTCCC
128 CGACTGGGGCTTAGACATGGAATGAACTCCC
** * * * * * * *
16355098 TATGCCTAAGCCAACCCATGAAATGGGCGTGCTGGCGCTCAGCCGATCGGAGATGCAGAATGCGC
1 TATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCGCTCAGCCGACCGAAGAGGCATAATGCGC
* * * * ** * * * **
16355163 AAGCTAGGAATTGGCCCGATCCCCC-CTGCGTGCTATCGATC-CTACTACTGCAACCCTCAGTCC
66 AAG-TCGGGATAGACTTGGTCCCCCTCTGCGTGCTATCGATCTC-GCTGCCACAACCCTCAGTCC
* * * ** * * *
16355226 CATTCGATCTTAGAC-TGGGAATGAAATTCG
129 GACTGGGGCTTAGACAT-GGAATGAACTCCC
* * * *
16355256 TTTGCCTAAGTCAACCCACAAAACGAGCGTGCAGGCGTTGAGCCTG-CCGAAGAGGCATAATGCG
1 TATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCGCTCAGCC-GACCGAAGAGGCATAATGCG
* * *
16355320 CAAGTCGGCGATAGACTTGGTCCCCCTCTGCGTGCTACCAATCTCGCTGCCACAACCCTCGGTCC
65 CAAGTCGG-GATAGACTTGGTCCCCCTCTGCGTGCTATCGATCTCGCTGCCACAACCCTCAGTCC
16355385 GGA-TGGGGCTTAGACATGGAATGAACTCCC
129 -GACTGGGGCTTAGACATGGAATGAACTCCC
* *
16355415 TATCCCTAAGCCAACCCACAAAACGGGCGTG
1 TATGCCTAAGCCAACCCACAAAACGAGCGTG
16355446 TGGGCACTCA
Statistics
Matches: 266, Mismatches: 71, Indels: 22
0.74 0.20 0.06
Matches are distributed among these distances:
157 5 0.02
158 113 0.42
159 144 0.54
160 4 0.02
ACGTcount: A:0.24, C:0.31, G:0.25, T:0.20
Consensus pattern (158 bp):
TATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCGCTCAGCCGACCGAAGAGGCATAATGCGC
AAGTCGGGATAGACTTGGTCCCCCTCTGCGTGCTATCGATCTCGCTGCCACAACCCTCAGTCCGA
CTGGGGCTTAGACATGGAATGAACTCCC
Found at i:16357017 original size:26 final size:26
Alignment explanation
Indices: 16356988--16357043 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
16356978 CCGATCCAAT
16356988 CTTAGAC-TGGGAATGAACTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
**
16357014 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCATATG
16357040 CTTA
1 CTTA
16357044 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 26 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:16357360 original size:26 final size:26
Alignment explanation
Indices: 16357331--16357383 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16357321 TCGGTCTGAT
*
16357331 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16357357 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16357383 C
1 C
16357384 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16358037 original size:26 final size:26
Alignment explanation
Indices: 16357999--16358051 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16357989 GGCTCAAAAT
*
16357999 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
16358025 CTTAGACAT-GGAATGAACTCAGTATG
1 CTTAGAC-TGGGAATGAACTCAGTATG
16358051 C
1 C
16358052 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATG
Found at i:16358432 original size:159 final size:160
Alignment explanation
Indices: 16358024--16358460 Score: 435
Period size: 159 Copynumber: 2.7 Consensus size: 160
16358014 AACTCCGTAT
* * * **
16358024 GCTTAGACATGGAATGAACTCAGTATGCCTAAGCCAACCCACGAAATGAGCGTACATGCACTCAG
1 GCTTAGACATGGAATGAATTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAG
*
16358089 TCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCC-CTACGTTGACGTGTTG
66 -CCGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGG-CCGGTCCCCCTCTACGTTGACGTGTTG
* * *
16358153 TCAACCTTGCTGCCGCAACCTTCGGTCTGGTCTGA
129 T--A-CTGGCTGCCACAACCTTCGGTCCGGTCTGA
* * ** * * *
16358188 TCTTAGAC-TGGGAAAGAACTT-CGTATGCCTAAGTTAACCCATGAAACGAGCGTGCGGGCACTG
1 GCTTAGACAT-GGAATGAA-TTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTC
* *
16358251 AGCCGACCGAAGAGGCATAATGCGCAAGCCGGGGATCGGCTCGGTCCCCCTCT-C--TGTAC-TG
64 AGCCG-TCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGC-CGGTCCCCCTCTACGTTG-ACGTG
* *
16358312 TTGGT-CTGGCTGGCACAACCCTT-GGTCCGG-CTGGG
126 TT-GTACTGGCTGCCACAA-CCTTCGGTCCGGTCT-GA
* * * *
16358347 GCTTAGACATGGAATGAATTCCCTATGCGTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAATTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAG
* *
16358412 CCAGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCTGGTCCCCCT
66 CC-GTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCC-GGTCCCCCT
16358461 TGCGTGCTGT
Statistics
Matches: 225, Mismatches: 35, Indels: 31
0.77 0.12 0.11
Matches are distributed among these distances:
158 5 0.02
159 107 0.48
160 6 0.03
162 6 0.03
163 8 0.04
164 90 0.40
165 3 0.01
ACGTcount: A:0.22, C:0.29, G:0.30, T:0.19
Consensus pattern (160 bp):
GCTTAGACATGGAATGAATTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCACTCAG
CCGTCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCGGTCCCCCTCTACGTTGACGTGTTGTA
CTGGCTGCCACAACCTTCGGTCCGGTCTGA
Found at i:16359904 original size:26 final size:26
Alignment explanation
Indices: 16359866--16359918 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16359856 GGCTCAAAAT
16359866 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16359892 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16359918 C
1 C
16359919 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16360101 original size:26 final size:26
Alignment explanation
Indices: 16360063--16360115 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16360053 TCAGTCTAAT
** * *
16360063 CTTAGACTGGGAATGAATTCTGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
16360089 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
16360115 C
1 C
16360116 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATG
Found at i:16360465 original size:159 final size:157
Alignment explanation
Indices: 16360088--16360595 Score: 531
Period size: 159 Copynumber: 3.2 Consensus size: 157
16360078 AATTCTGTAT
* *
16360088 GCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* ** *
16360153 TCGGTC-AGAGAGGCAGAATGCGCAAGTCAAGGATTAGCCCAGTCCCCC-CTGCGTGCTATCGAT
65 CCGGTCGA-AGAGGCAGAATGCGCAAG-CCGGGATTAGCCCGGTCCCCCTCTGCGTGCTATCGAT
* * * *
16360216 CCTACTACCACAACCCTTGATCCGATCCGATCCGA
128 CCTGCTGCCACAACCC----T-CGGTCCGATCTGA
* * * * * *
16360251 TCTTTGACTGGAAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCGCTGAG
1 GCTTAGACTGG-AATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * *
16360316 CCGATCGAAGAGGCATAATGCGCAAGCCTGGGATCAGCTCGGTCCCCCTCTGCGTGCTGTC-AGT
65 CCGGTCGAAGAGGCAGAATGCGCAAGCC-GGGATTAGCCCGGTCCCCCTCTGCGTGCTATCGA-T
* *
16360380 CCCGCTGCCACAACCCTCGGTCCGA-CTGGG
128 CCTGCTGCCACAACCCTCGGTCCGATCT-GA
* * * * *
16360410 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAAACCATGAAACGGGCGTGCGGGCGATCAA
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * *
16360475 CCGGCCGGAGAGGCAGAATGCGTAAGCCGAGGATTAGCCCGGT-CCCCTCTGCGAGCTATCGATC
65 CCGGTCGAAGAGGCAGAATGCGCAAGCCG-GGATTAGCCCGGTCCCCCTCTGCGTGCTATCGATC
* *
16360539 CTGCTGTCGCAACCCTCGGTCCGATCTGA
129 CTGCTGCCACAACCCTCGGTCCGATCTGA
*
16360568 TCTTAGACTGGGAATGAACTCCGTATGC
1 GCTTAGACT-GGAATGAACTCCGTATGC
16360596 TTAGACTGGG
Statistics
Matches: 285, Mismatches: 49, Indels: 27
0.79 0.14 0.07
Matches are distributed among these distances:
157 1 0.00
158 65 0.23
159 95 0.33
160 4 0.01
162 3 0.01
163 91 0.32
164 26 0.09
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
GCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CGGTCGAAGAGGCAGAATGCGCAAGCCGGGATTAGCCCGGTCCCCCTCTGCGTGCTATCGATCCT
GCTGCCACAACCCTCGGTCCGATCTGA
Found at i:16360598 original size:26 final size:26
Alignment explanation
Indices: 16360569--16360621 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16360559 CCGATCTGAT
*
16360569 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
16360595 CTTAGACTGGGGATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
16360621 C
1 C
16360622 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:16361823 original size:587 final size:588
Alignment explanation
Indices: 16360704--16361881 Score: 1846
Period size: 587 Copynumber: 2.0 Consensus size: 588
16360694 GAATAGATGG
** * *
16360704 TAGGTGGGTTCAAGCACATCTTCATACTTCTGTCGTGCCAATGCCATTTTTATGGCTTGTAAATT
1 TAGGTGGGTTCAAGCACATCTTCATACTTCTACCATGCCAAAGCCATTTTTATGGCTTGTAAATT
16360769 CATAAAATGGCCCCCTAAGCCTTCATGTGAAGTTTCGTGGCAAGACGACCCGTTTTCTATTTTTC
66 CATAAAATGGCCCCCTAAGCCTTCATGTGAAGTTTCGTGGCAAGACGACCCGTTTTCTATTTTTC
** * * *
16360834 ACGATTTTTGAAACTTTTAGCGGTTTGGGATTTTTTACAATTTTTTTAGTAAGAGTTTTGTCTCC
131 ACGATTTTTGAAACTTTTAGCGGTCAGGGATTTTTTACAATTTGTTTAGAAAGAGTTTTGTCCCC
* *
16360899 AAATTTGGTAGAGGTGATCCCTGTAGTTTTGTTGGCATGCACAAGAAAATTCAGCTAAAAAATCG
196 AAATTTGGTAGAGGTGATCCCTGTAGTTTTGTTGGCATGCACAAAAAAATTCAGATAAAAAATCG
*
16360964 AAGTGGAGAAGATTTTGTGACCGTTTAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
261 AAGTGGAGAAGATTTTGTGACCATTTAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
*
16361029 GACAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTTAGTTCTCGAGGTTTGATGAGG
326 GACAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
* *
16361094 GATAGGGGACCAATATAAGGGCTAAGTACCAGCACCCATCACACATCATGTGCGACACCCCCCGG
391 GATAGGGGACCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTACGACACCCCCCGG
* * ** * * * *
16361159 CCCTCCAATCGTCGAAACCCCCAATGCCGCCGGTTAGGCTCTCTGACGATGCTCCGGTGATGGTG
456 CCCCCCAATCGCCGAAACCCCCAATGCAACCGATTAGGCTCTCCGACGATGATCCGATGATGGTG
* * * *
16361224 CCCCGGGCGAAAAATATGCA-GTACCATCACATGCTC-GAGCCCAGAATGTGCACCGTGGCTCAA
521 CCCCGAGCGAAAAAAATG-AGGCACCAGCACATGC-CGGAGCCCAGAATGTGCACCGTGGCTCAA
16361287 AATCT
584 AATCT
*
16361292 TAGGTGGGTTCAAGCACATCTTCATATTTCTACCATGCCAAAGCCATTTTTATGGCTTGTAAATT
1 TAGGTGGGTTCAAGCACATCTTCATACTTCTACCATGCCAAAGCCATTTTTATGGCTTGTAAATT
** * *
16361357 CATTCAATGGTCCCCTAAGCCTTCATGTGAAGTTTCGTGGCAAGATGACCCGTTTTCTATTTTTC
66 CATAAAATGGCCCCCTAAGCCTTCATGTGAAGTTTCGTGGCAAGACGACCCGTTTTCTATTTTTC
* *
16361422 ATGATTTTTGAAACTTTTTA-CGGGTCAGGG-TTTTTTACAATTTGTTTAGAAAGTGTTTTGTCC
131 ACGATTTTTGAAAC-TTTTAGC-GGTCAGGGATTTTTTACAATTTGTTTAGAAAGAGTTTTGTCC
* *
16361485 CCAAATTTGGTAGAGGTGATCCTTGTA-TTTTGTTGGCATGCACAAAAAAATTCAGATAAAAACT
194 CCAAATTTGGTAGAGGTGATCCCTGTAGTTTTGTTGGCATGCACAAAAAAATTCAGATAAAAAAT
* *
16361549 CGAAGTGGAGAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTA
259 CGAAGTGGAGAAGATTTTGTGACCATTTAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
** * *
16361614 CTGGTAGCAAACCTATAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGA
324 CTGACAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* * *
16361679 GGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTACG-CACACCCC
389 GGGATAGGGGACCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTACGACAC-CCCC
*
16361743 CGGCCCCCCAATCGCCGGAACCCCCAATGCAACCGATTAGGCTCTCCGACGATGATCCGATGATG
453 CGGCCCCCCAATCGCCGAAACCCCCAATGCAACCGATTAGGCTCTCCGACGATGATCCGATGATG
*
16361808 GTGCCCCGAGCGAAAAAAATGAGGCACCAGCACATGCCGGAGCCCAGCATGTGCACCGTGGCTCA
518 GTGCCCCGAGCGAAAAAAATGAGGCACCAGCACATGCCGGAGCCCAGAATGTGCACCGTGGCTCA
16361873 AAATCT
583 AAATCT
16361879 TAG
1 TAG
16361882 ACTGGGAATG
Statistics
Matches: 538, Mismatches: 47, Indels: 11
0.90 0.08 0.02
Matches are distributed among these distances:
586 5 0.01
587 332 0.62
588 190 0.35
589 11 0.02
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (588 bp):
TAGGTGGGTTCAAGCACATCTTCATACTTCTACCATGCCAAAGCCATTTTTATGGCTTGTAAATT
CATAAAATGGCCCCCTAAGCCTTCATGTGAAGTTTCGTGGCAAGACGACCCGTTTTCTATTTTTC
ACGATTTTTGAAACTTTTAGCGGTCAGGGATTTTTTACAATTTGTTTAGAAAGAGTTTTGTCCCC
AAATTTGGTAGAGGTGATCCCTGTAGTTTTGTTGGCATGCACAAAAAAATTCAGATAAAAAATCG
AAGTGGAGAAGATTTTGTGACCATTTAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
GACAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
GATAGGGGACCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTACGACACCCCCCGG
CCCCCCAATCGCCGAAACCCCCAATGCAACCGATTAGGCTCTCCGACGATGATCCGATGATGGTG
CCCCGAGCGAAAAAAATGAGGCACCAGCACATGCCGGAGCCCAGAATGTGCACCGTGGCTCAAAA
TCT
Found at i:16361928 original size:26 final size:26
Alignment explanation
Indices: 16361877--16361929 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
16361867 GGCTCAAAAT
*
16361877 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCATATG
16361903 CTTAGACAT-GGAATGAAC-TCTATATG
1 CTTAGAC-TGGGAATGAACTTC-ATATG
16361929 C
1 C
16361930 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 2 0.08
26 21 0.88
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCATATG
Found at i:16362404 original size:158 final size:157
Alignment explanation
Indices: 16361903--16362404 Score: 428
Period size: 159 Copynumber: 3.2 Consensus size: 157
16361893 ACTTCGTATG
** * * *
16361903 CTTAGACAT-GGAATGAACTCTATATGCCTAAGCCAACCTATGAAACGAGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAGCG-GCGTGCGGGCACTCAG
* * * * * * *
16361967 CTGGCCGAAGAGGTAGAATGCGTAAGTCGGAGATCAATCCGATCCCCCCTTGTGTGCTGTCGATC
64 CCGGCTGAAGAGGCAGAATGCGTAAGCCGGGGATCAACCCGAT-CCCCCTTGCGTGCTGTCGATC
* * * * *
16362032 CTGCTCCCGTAACCCTCGGTCCGATCCGAT
128 CTGCTACCGCAACCCTCGGTCTGGTCTGAT
* ** * * * *
16362062 CTTAGACTGGGAATGAACTCCGTATGCATAATTCAACCCACGGAATG-AGCGTGCAGGCACTGAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCA-TGAA-GCGGCGTGCGGGCACTCAG
* * * * * * *
16362126 CC-GATCGAAGAGGCATAATGCGCAAGCTGGGGATCGACCC-AGTCCCCCTCTGCGTGCTATCGG
64 CCGGCT-GAAGAGGCAGAATGCGTAAGCCGGGGATCAACCCGA-TCCCCCT-TGCGTGCTGTCGA
* * * **
16362189 TCCCGCTGCCACAACCCTCGGT-TCGG-CTGGGG
126 TCCTGCTACCGCAACCCTCGGTCT-GGTCT-GAT
*
16362221 CTTAGACAT-GGAATGAAATCC-TATGCCTAAGCCAACCCATGAAGCGGTCGTGCGGGCACTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAGCGG-CGTGCGGGCACTCAG
* *
16362284 CCGGCTGGAGAGGCAGAATGCGTAAGCCGGGGATCAACCCGATCCCCCTTGGGTGCTG-CTGATC
64 CCGGCTGAAGAGGCAGAATGCGTAAGCCGGGGATCAACCCGATCCCCCTTGCGTGCTGTC-GATC
* * *
16362348 TTGCTACCGCAGCCTTCGGTCTGGTCTGAT
128 CTGCTACCGCAACCCTCGGTCTGGTCTGAT
* *
16362378 CCTACACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
16362405 TTAGACTGGG
Statistics
Matches: 262, Mismatches: 63, Indels: 37
0.72 0.17 0.10
Matches are distributed among these distances:
156 3 0.01
157 47 0.18
158 84 0.32
159 124 0.47
160 4 0.02
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAGCGGCGTGCGGGCACTCAGCC
GGCTGAAGAGGCAGAATGCGTAAGCCGGGGATCAACCCGATCCCCCTTGCGTGCTGTCGATCCTG
CTACCGCAACCCTCGGTCTGGTCTGAT
Found at i:16362988 original size:159 final size:159
Alignment explanation
Indices: 16362732--16363101 Score: 370
Period size: 159 Copynumber: 2.3 Consensus size: 159
16362722 TTGATCCTGC
* * * * * * *
16362732 TACCACAACCCTCAGTCCGGTCTGATCTTATACTGGGAATGAACTTCGTATGCCTAAGTCAACCC
1 TACCACAACCCTCAGTCCGGTCTAAGCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCA
* ** * * *
16362797 ACGAAACGAGCATTCGGGGGCTGAGCCAATCGGAGAGGCATAATGCGTAAGCCGAGGATCGGCCC
66 ACGAAACGAGCATGCGGGCCCTGAGCCAATCGGAGAGGCAAAATGCGCAAGCCAAGGATCGGCCC
16362862 GATCCCCTTCTGTGTATTGTCGGTCTCGT
131 GATCCCCTTCTGTGTATTGTCGGTCTCGT
16362891 TACCACAACCCTCAGTCCGG-CTAAGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAAC
1 TACCACAACCCTCAGTCCGGTCTAA-GCTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAAC
* * * * * * *
16362954 CAACGAAATGGGCGTGCGGGCCCTTAGCCGATCGGAGAGGTAAAATGCGCAAGCTAAGGATCGGC
64 CAACGAAACGAGCATGCGGGCCCTGAGCCAATCGGAGAGGCAAAATGCGCAAGCCAAGGATCGGC
* * * * ** * *
16363019 TCGGTCCCC-CCTGCGTGCTGTCGATCGT-GC
129 CCGATCCCCTTCTGTGTATTGTCGGTC-TCGT
* * * ** * *
16363049 TGCCGCAACCCTCAGTTCGGTCCGATCTTAGACTGGGAATGAACTCCATATGC
1 TACCACAACCCTCAGTCCGGTCTAAGCTTAGACTGGGAATGAACTCCCTATGC
16363102 TTGGACTGGG
Statistics
Matches: 171, Mismatches: 35, Indels: 11
0.79 0.16 0.05
Matches are distributed among these distances:
157 1 0.01
158 57 0.33
159 112 0.65
160 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (159 bp):
TACCACAACCCTCAGTCCGGTCTAAGCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCA
ACGAAACGAGCATGCGGGCCCTGAGCCAATCGGAGAGGCAAAATGCGCAAGCCAAGGATCGGCCC
GATCCCCTTCTGTGTATTGTCGGTCTCGT
Found at i:16364019 original size:26 final size:26
Alignment explanation
Indices: 16363983--16364035 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16363973 CTGATTCGAT
16363983 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16364009 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16364035 C
1 C
16364036 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16364196 original size:26 final size:26
Alignment explanation
Indices: 16364167--16364219 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16364157 TCCGATCTAT
16364167 CTTAGAC-TGGGAATAAACTCCGTATG
1 CTTAGACAT-GGAATAAACTCCGTATG
* *
16364193 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATAAACTCCGTATG
16364219 C
1 C
16364220 CTAAGCCATC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCCGTATG
Found at i:16364259 original size:184 final size:183
Alignment explanation
Indices: 16363798--16364378 Score: 581
Period size: 184 Copynumber: 3.2 Consensus size: 183
16363788 TGGCTCAAAC
*
16363798 TCTTAGATTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * * *
16363863 ACGAAACTGA-TGTGCGTGCGCTTAGTCGACCGAAAAGGTAGAATGCGTAAGTCGGGGACTGGCC
66 ACGAAAC-GAGTGTGCG-GCGCTCAGCCGACCGAAGAGGCAGAATGCGCAAGTCGAGGACTGGCC
* * * *
16363927 CGATCACCCTCTGTGTGCTACCGATCCTACTATCACAACCCTCGGTCTGATTCGA
129 CGATCACCCCCTGCGTGCTACCGATCCTACTATCACAACCCTCGATCCGATTCGA
* *
16363982 TCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAAC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAAC
* * * *
16364046 TAACGAAACGAGCGTGTG-GGCGTTCAGCCGACCGAAGAGGCAAAATGTGCAAGTCGAGGA-TCG
65 -CACGAAACGA--GTGTGCGGCGCTCAGCCGACCGAAGAGGCAGAATGCGCAAGTCGAGGACT-G
* * * ** *
16364109 GCCCGGTCCCCCCCTGCGTGCTGCCGATCCTACTATCGTAACCCTCGATCCGA-TCTA
126 GCCCGATCACCCCCTGCGTGCTACCGATCCTACTATCACAACCCTCGATCCGATTCGA
* * *
16364166 TCTTAGACTGGGAATAAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCATCG
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC-
* * ** ** * **
16364231 CACGAAACGAGTGTGCCGACACTCAGCCGGTCGAAGAGGCAGAATGCATAAG-CCAGGGACCAGC
65 CACGAAACGAGTGTG-CGGCGCTCAGCCGACCGAAGAGGCAGAATGCGCAAGTCGA-GGACTGGC
* * * * * *
16364295 CTGATC-CCCCCT-CATGTGCTATCGATCCTGCTA-CTGCAACCCTC-AGTCTG-GTCTGA
128 CCGATCACCCCCTGC--GTGCTACCGATCCTACTATC-ACAACCCTCGA-TCCGATTC-GA
16364351 TCTTAGACTGGGAATGAACTCCGTATGC
1 TCTTAGACTGGGAATGAACTCCGTATGC
16364379 CTAAGTCAAC
Statistics
Matches: 329, Mismatches: 51, Indels: 33
0.80 0.12 0.08
Matches are distributed among these distances:
182 6 0.02
183 11 0.03
184 194 0.59
185 113 0.34
186 1 0.00
187 4 0.01
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.23
Consensus pattern (183 bp):
TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
ACGAAACGAGTGTGCGGCGCTCAGCCGACCGAAGAGGCAGAATGCGCAAGTCGAGGACTGGCCCG
ATCACCCCCTGCGTGCTACCGATCCTACTATCACAACCCTCGATCCGATTCGA
Found at i:16364483 original size:159 final size:156
Alignment explanation
Indices: 16364193--16364695 Score: 403
Period size: 159 Copynumber: 3.2 Consensus size: 156
16364183 ACTCCGTATG
* * * * * * *
16364193 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCATCGCACGAAACGAGTGTGCCGACACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGC
* * * * * * *
16364258 CGGTCGAAGAGGCAGAATGCATAAGCCAGGGACCAGCCTGATCCCCCCTCATG-TGCT-ATCGAT
66 CGATGGGAGAGGCAGAATGCATAAGCCAGGGATCGGCCCGAT-CCCCCTC-TGCTGCTGCT-GAT
16364321 CCTGCTACTGCAACCCTCAGTCTGG-TCTGAT
128 CCTGCT-CT-CAACCCTCAGTCTGGTTC-GAT
* * * *
16364352 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTTCGGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
* * *
16364416 CCGATGGGAGAGGCATAATGCATAAGCCGGGGATCGGCCCGATCCCCCTCTGCCTGCTGCTGGTC
65 CCGATGGGAGAGGCAGAATGCATAAGCCAGGGATCGGCCCGATCCCCCTCTG-CTGCTGCTGATC
* * * * **
16364481 CTGTTGCCACAACCCTCGGT-TCGGTTGGGG
129 CTGCT--CTCAACCCTCAGTCT-GGTTCGAT
* * * * * *
16364511 CTTAGACATGCAATGAACTCCCTATGCCTCAGCCAAACCATGAAACGGGCGTGCGGGCGCTCAG-
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGC
* *** * * *
16364575 CTA-GCCGGAGAGGCAGAATGTGCAAGTCAGGGATCGGCCCGATCCCCC-CTACGTGCTGCCGAT
66 CGATG--GGAGAGGCAGAATGCATAAGCCAGGGATCGGCCCGATCCCCCTCTGC-TGCTGCTGAT
* * *
16364638 CCTGCTGTCATAACCCTCAATCCGGTTCGAT
128 CCTGCTCTC--AACCCTCAGTCTGGTTCGAT
16364669 CTTAGAC-TAGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
16364696 TTAGACTGGG
Statistics
Matches: 270, Mismatches: 59, Indels: 31
0.75 0.16 0.09
Matches are distributed among these distances:
156 1 0.00
157 5 0.02
158 62 0.23
159 198 0.73
160 4 0.01
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGC
CGATGGGAGAGGCAGAATGCATAAGCCAGGGATCGGCCCGATCCCCCTCTGCTGCTGCTGATCCT
GCTCTCAACCCTCAGTCTGGTTCGAT
Found at i:16364698 original size:26 final size:26
Alignment explanation
Indices: 16364669--16364721 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16364659 CCGGTTCGAT
16364669 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
16364695 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16364721 C
1 C
16364722 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16371024 original size:26 final size:26
Alignment explanation
Indices: 16370986--16371038 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16370976 GGGTCAAACT
16370986 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16371012 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16371038 C
1 C
16371039 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16371864 original size:26 final size:26
Alignment explanation
Indices: 16371828--16371880 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16371818 CGAGTCTGAT
*
16371828 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16371854 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16371880 C
1 C
16371881 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16372067 original size:26 final size:26
Alignment explanation
Indices: 16372038--16372088 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16372028 CCAGTCCGAT
16372038 CTTAGAC-TGGGAATGAACTCCGTATC
1 CTTAGACAT-GGAATGAACTCCGTATC
*
16372064 CTTAGACATGGAATGAACTCTGTAT
1 CTTAGACATGGAATGAACTCCGTAT
16372089 GCCTAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATC
Found at i:16372409 original size:26 final size:26
Alignment explanation
Indices: 16372378--16372430 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16372368 GGTTTGGTCC
*
16372378 AATCTTAGACTGGGAATGAACTTTGT
1 AATCTTAGACTGGGAATGAACTCTGT
*
16372404 AATCTTAGACTGGGGATGAACTCTGT
1 AATCTTAGACTGGGAATGAACTCTGT
16372430 A
1 A
16372431 TGCCTAAGTC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.13, G:0.25, T:0.32
Consensus pattern (26 bp):
AATCTTAGACTGGGAATGAACTCTGT
Found at i:16372661 original size:26 final size:26
Alignment explanation
Indices: 16372623--16372675 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16372613 GGCCCAAACT
16372623 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16372649 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16372675 C
1 C
16372676 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16373007 original size:26 final size:26
Alignment explanation
Indices: 16372970--16373020 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16372960 TCTGATCTTA
16372970 GACTGGGAATGAACTCCATATGCTTC
1 GACTGGGAATGAACTCCATATGCTTC
* *
16372996 GACTGGGGATGAACTCCGTATGCTT
1 GACTGGGAATGAACTCCATATGCTT
16373021 AAGTCAACCT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (26 bp):
GACTGGGAATGAACTCCATATGCTTC
Found at i:16373511 original size:159 final size:159
Alignment explanation
Indices: 16373175--16373878 Score: 684
Period size: 159 Copynumber: 4.4 Consensus size: 159
16373165 CCGATCAGAT
** * ** * * * **
16373175 CTTAGAC-TGGGAATGAACTCTGTATACCTAAGCCAACCCAGGAAACGAGCGTGCGGGCATTCAG
1 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGGCGTACGGGCGCTCAG
* *** * * * *
16373239 CAGGTTGGAGAGGTAGAATGCGCAGGCC-AGGAATCGACTCGGTCCCCC-CTGCGTGCTGTC-GA
65 CCGGCCAGAGAGGTAGAATGCGCAAGCCGAGG-ACCGACCCGATCCCCCTCTGCGTGCTGTCAG-
* ** * * * **
16373301 TCCTGCTATCGCAACCCTCGATCCGG-TCCGAT
128 TCCCGCTGCCACAACCCTCGGTCCGGCT-GGGG
* * * * * * *
16373333 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTTCAGGC-CTTGA
1 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGGCGTACGGGCGC-TCA
* * * * * ** * * *
16373396 ACCGGCCAGAAAGGCATAATGCGCAAGCCAAGGATTGGCCCGTTCCCCCTCTGCGTGCTGCCAGT
64 GCCGGCCAGAGAGGTAGAATGCGCAAGCCGAGGACCGACCCGATCCCCCTCTGCGTGCTGTCAGT
* *
16373461 CCCACTGCCACAACCCTCGGTCCGACTGGGG
129 CCCGCTGCCACAACCCTCGGTCCGGCTGGGG
* * *
16373492 CTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCACAAAATGGGCGTGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGGCGTACGGGCGCTCAGC
* * *
16373557 CGGTCGGAGAGGTAGAATGCGCAAGCCGAGGACCGACCCGGTCCCCCTCTGCGTGCTGTCAGTCC
66 CGGCCAGAGAGGTAGAATGCGCAAGCCGAGGACCGACCCGATCCCCCTCTGCGTGCTGTCAGTCC
*
16373622 CGCTGCCACAACCCTCTGTCCGGCTGGGG
131 CGCTGCCACAACCCTCGGTCCGGCTGGGG
* *
16373651 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCAACGAAATGGGCGTACGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGGCGTACGGGCGCTCAGC
* * * * * *
16373716 CGGCCAGAGAGGTAGAATGCGCAAGCTGGGGACCAACCCGATCCCCCACTGCATGCTGTCACTCC
66 CGGCCAGAGAGGTAGAATGCGCAAGCCGAGGACCGACCCGATCCCCCTCTGCGTGCTGTCAGTCC
* *
16373781 CGCTACCACAACCCTCGGTCTGGCTGGGG
131 CGCTGCCACAACCCTCGGTCCGGCTGGGG
* * ** * * *
16373810 CTTAGACATGAAATGAACTCCCTATGCCTAAGCCAACCTATGAAATGGGTGTTCGGCCGCTCAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGGCGTACGGGCGCTCAGC
16373875 CGGC
66 CGGC
16373879 TGGAGTGGCA
Statistics
Matches: 459, Mismatches: 80, Indels: 13
0.83 0.14 0.02
Matches are distributed among these distances:
158 85 0.19
159 370 0.81
160 4 0.01
ACGTcount: A:0.23, C:0.32, G:0.27, T:0.18
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGGCGTACGGGCGCTCAGC
CGGCCAGAGAGGTAGAATGCGCAAGCCGAGGACCGACCCGATCCCCCTCTGCGTGCTGTCAGTCC
CGCTGCCACAACCCTCGGTCCGGCTGGGG
Found at i:16373858 original size:318 final size:317
Alignment explanation
Indices: 16373186--16373874 Score: 753
Period size: 318 Copynumber: 2.2 Consensus size: 317
16373176 TTAGACTGGG
** * * * * ** *
16373186 AATGAACTCTGTATACCTAAGCCAACCCAGGAAACGAGCGTGCGGGCATTCAGCAGGTTGGAGAG
1 AATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAGCAGGTCGGAGAG
* * * * * *
16373251 GTAGAATGCGCAGGCCAGGAATCGACTCGGTCCCCCCTGCGTGCTGTCGATCCTGCTATCGCAAC
66 GTAGAATGCGCAAGCCAGGAACCGACCCGGTCCCCCCTGCGTGCTGTCGATCCCGCTACCACAAC
* * * *
16373316 CCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGA
131 CCTCGATCCGGTCCGAGCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCAACAAAACGA
* * * **** * *
16373381 GCGTTCAGGCCTTGAACCGGCCAGAAAGGCATAATGCGCAAGCCAAGGATTGGCCCGTTCCCCCT
196 GCGTACAGGCCTTCAACCGGCCAGAAAGGCAGAATGCGCAAGCCAAGGACCAACCCGATCCCCCA
* * * *
16373446 CTGCGTGCTGCCAGTCCCACTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGG
261 CTGCATGCTGCCACTCCCACTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGA
* *
16373503 AATGAACTCCCTATGCCTAAGCTAACCCACAAAATGGGCGTGCGGGCGCTCAGTC-GGTCGGAGA
1 AATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAG-CAGGTCGGAGA
*
16373567 GGTAGAATGCGCAAGCCGAGG-ACCGACCCGGTCCCCCTCTGCGTGCTGTC-AGTCCCGCTGCCA
65 GGTAGAATGCGCAAGCC-AGGAACCGACCCGGTCCCCC-CTGCGTGCTGTCGA-TCCCGCTACCA
* *
16373630 CAACCCTCTG-TCCGG-CTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCAAC
127 CAACCCTC-GATCCGGTC-CGAGCTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCAAC
* * * * * * * ***
16373692 GAAATGGGCGTACGGGCGC-TCAGCCGGCCAGAGAGGTAGAATGCGCAAGCTGGGGACCAACCCG
189 AAAACGAGCGTACAGGC-CTTCAACCGGCCAGAAAGGCAGAATGCGCAAGCCAAGGACCAACCCG
* * * *
16373756 ATCCCCCACTGCATGCTGTCACTCCCGCTACCACAACCCTCGGTCTGGCTGGGGCTTAGACATGA
253 ATCCCCCACTGCATGCTGCCACTCCCACTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGA
* * * * *
16373821 AATGAACTCCCTATGCCTAAGCCAACCTATGAAATGGGTGTTCGGCCGCTCAGC
1 AATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAGC
16373875 CGGCTGGAGT
Statistics
Matches: 306, Mismatches: 58, Indels: 16
0.81 0.15 0.04
Matches are distributed among these distances:
317 84 0.27
318 219 0.72
319 3 0.01
ACGTcount: A:0.23, C:0.32, G:0.27, T:0.18
Consensus pattern (317 bp):
AATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAGCAGGTCGGAGAG
GTAGAATGCGCAAGCCAGGAACCGACCCGGTCCCCCCTGCGTGCTGTCGATCCCGCTACCACAAC
CCTCGATCCGGTCCGAGCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCAACAAAACGA
GCGTACAGGCCTTCAACCGGCCAGAAAGGCAGAATGCGCAAGCCAAGGACCAACCCGATCCCCCA
CTGCATGCTGCCACTCCCACTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGA
Found at i:16374497 original size:26 final size:26
Alignment explanation
Indices: 16374468--16374520 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16374458 CCGGTTTGAT
16374468 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16374494 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16374520 C
1 C
16374521 CTAACTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16374654 original size:184 final size:183
Alignment explanation
Indices: 16374325--16374678 Score: 437
Period size: 183 Copynumber: 1.9 Consensus size: 183
16374315 GACATGGAAC
* * *
16374325 GAACTCCCTATGCCTAAGCCAACCCACGAAATAGGCGTGCGGGTGCTCAGTCGATCGAAGAGGCA
1 GAACTCCCTATGCCTAAGCCAACCCACGAAAGAGGCGTGCGGGCGCTCAGCCGATCGAAGAGGCA
* * * * * * * * *
16374390 GAATGCGTAAGCTGGGGATCGGCCCGGTCCCCCTGCGTGCTACCGATCCTGCTATCGCAACCCTC
66 GAATGAGCAAGCTCGGGAGCAGCCCGATCCCCCTGCGTGCTACCAATCCTGCTACCGAAACCCTC
* *
16374455 AGTCCGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGAT
131 AGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGAT
* * *
16374508 GAACTCCGTATGCCTAA-CTCAACCCATGAAACGA-GCGTGCGGGCGCTCAGCC-AGTCGGAGAG
1 GAACTCCCTATGCCTAAGC-CAACCCACGAAA-GAGGCGTGCGGGCGCTCAGCCGA-TCGAAGAG
* **
16374570 GTAGAATGAGCAAG-TCGGGAGCTAGCCCGATCCCTCCTGCGTGCTGTCAATCCTGCTACCGAAA
63 GCAGAATGAGCAAGCTCGGGAGC-AGCCCGATCCC-CCTGCGTGCTACCAATCCTGCTACCGAAA
* *
16374634 CCCTCTGTCCGGTCTGATCTTAGACTAGGAATGAACTTCGTATGC
126 CCCTCAGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGC
16374679 CTAAGTCAAC
Statistics
Matches: 144, Mismatches: 22, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
182 8 0.06
183 70 0.49
184 66 0.46
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (183 bp):
GAACTCCCTATGCCTAAGCCAACCCACGAAAGAGGCGTGCGGGCGCTCAGCCGATCGAAGAGGCA
GAATGAGCAAGCTCGGGAGCAGCCCGATCCCCCTGCGTGCTACCAATCCTGCTACCGAAACCCTC
AGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGAT
Found at i:16374700 original size:500 final size:497
Alignment explanation
Indices: 16373491--16375511 Score: 2101
Period size: 500 Copynumber: 4.0 Consensus size: 497
16373481 TCCGACTGGG
* * * * *
16373491 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCT-AACCCACAAAATGGGCGTGCGGGCGCTCA
1 GCTTAGAC-TGGGATGAACTCCGTATGCCTAAGCTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
16373555 GTCGGTCGGAGAGGTAGAATGCGCAAGCCGAGGACCGACCCGGTCCCCCTCTGCGTGCTGTCAGT
65 GCCAGTCGGAGAGGTAGAATGAGCAAGCCG-GGACAG-CCCGAT-CCCC-CTGCGTGCTGTCAAT
* * * ** *
16373620 CCCGCTGCCACAACCCTCTGTCCG-GCTGGGGCTTAGAC-ATGGAATGAACTCCCTATGCCTAAG
126 CCTGCTACCACAACCCTCTGTCCGATCT-GATCTTAGACTA-GGAATGAACTCCGTATGCCTAAG
* * * * * * * * *
16373683 CCAACCAACGAAATGGGCGTACGGGCGCTCAGCCGGCC-AGAGAGGTAGAATGCGCAAGCTGGGG
189 TCAACCCACGAAATGGGCGTTCGGGTGCTGAGCCAGCCGA-AGAGGCATAATGCGCAAGCCGGGG
* * * * *
16373747 ACCAACCCGATCCCCCACTGCATGCTGTCACTCCCGCTACCACAACCCTCGGTCTGGCTGGGGCT
253 ATCAACCCGATCCCCCTCTGCGTGCTGTCAGTCCCGCTACCACAACCCTCGGTCCGGCTGGGGCT
* * ** * * * *
16373812 TAGACATGAAATGAACTCCCTATGCCTAAGCCAACCTATGAAATGGGTGTTCGGCCGCTCAGCCG
318 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGCGCTCAGTCG
* * * * * * *
16373877 -GCTGGAGTGGCAGAATGCATAAGCTGGGGATCGGCGT-GGTCCACCTTGCATGCTGTCGATCTT
383 AGC-GAAGAGGCAGAATGCGTAAGCTGGGGATCGGC-TCGGTCC-CCCTGCGTGCTGCCGATCCT
* * * *
16373940 GCTGCCGCAACCCTTGGTCCGATCCGATCTCT-TATTGGGAATGAACTCCATAT
445 GCTGCCGCAACCCTCGGTCCGATCCGATCT-TAGACTGGGAATGAACTCCGTAT
*
16373993 GCTTAGACTATGGATGAACTCCGTATGCCTAAG-TCAACCCACGAAACGAGCGTGCGGGCGCTCA
1 GCTTAGACT-GGGATGAACTCCGTATGCCTAAGCTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
16374057 GCCAG-CGGGAGAGGTAGAATGCA-TAAGCCGGGAACCGGCTCGATCCCCCTTTGTGTGTTGTCG
65 GCCAGTC-GGAGAGGTAGAATG-AGCAAGCCGGG-A-CAGCCCGATCCCCC--TGCGTGCTGTCA
* * * ** * * *
16374120 ATCCTGCTATCATAACCC-CTGGTCCAATCCAATGTTAGACTAGGAATTAACTCTGTATGCCTAA
124 ATCCTGCTACCACAACCCTCT-GTCCGATCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAA
* *
16374184 GTCATCCCAC-AAATGGGCGTTCGGGTGCTGAGCCAGCCGAAGAGGCATAATGCGCAAGCCAGGG
188 GTCAACCCACGAAATGGGCGTTCGGGTGCTGAGCCAGCCGAAGAGGCATAATGCGCAAGCCGGGG
* * * *
16374248 ATC-ACCTC-AGTCCCCCTCTGCGTGCTGTCGGTCCCGCTACCACAATCCTCGGTCCGACTGGGA
253 ATCAACC-CGA-TCCCCCTCTGCGTGCTGTCAGTCCCGCTACCACAACCCTCGGTCCGGCTGGGG
* * * *
16374311 CTTAGACATGGAACGAACTCCCTATGCCTAAGCCAACCCACGAAATAGGCGTGCGGGTGCTCAGT
316 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGCGCTCAGT
* * *
16374376 CGATCGAAGAGGCAGAATGCGTAAGCTGGGGATCGGCCCGGTCCCCCTGCGTGCTACCGATCCTG
381 CGAGCGAAGAGGCAGAATGCGTAAGCTGGGGATCGGCTCGGTCCCCCTGCGTGCTGCCGATCCTG
** * * **
16374441 CTATCGCAACCCTCAGTCCGGTTTGATCTTAGACTGGGAATGAACTCCGTAT
446 CTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTAT
*
16374493 GCTTAGACTGGGGATGAACTCCGTATGCCTAA-CTCAACCCATGAAACGAGCGTGCGGGCGCTCA
1 GCTTAGACT-GGGATGAACTCCGTATGCCTAAGCTCAACCCACGAAACGAGCGTGCGGGCGCTCA
*
16374557 GCCAGTCGGAGAGGTAGAATGAGCAAGTCGGGAGCTAGCCCGATCCCTCCTGCGTGCTGTCAATC
65 GCCAGTCGGAGAGGTAGAATGAGCAAGCCGGGA-C-AGCCCGATCCC-CCTGCGTGCTGTCAATC
* *
16374622 CTGCTACCGA-AACCCTCTGTCCGGTCTGATCTTAGACTAGGAATGAACTTCGTATGCCTAAGTC
127 CTGCTACC-ACAACCCTCTGTCCGATCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTC
* * *
16374686 AACCCACGAAATGGGCGTTCGGGTGCTGAGCCAGTCGGAGAGGCATAATGCACAA-CCTGGGGAT
191 AACCCACGAAATGGGCGTTCGGGTGCTGAGCCAGCCGAAGAGGCATAATGCGCAAGCC-GGGGAT
** ** * * *
16374750 CGCCCCGATCCCTTTCTGCGTGCTGTCGGTCCCGCTGCCATAACCCTCGGTCCGGCTGGGGCTTA
255 CAACCCGATCCCCCTCTGCGTGCTGTCAGTCCCGCTACCACAACCCTCGGTCCGGCTGGGGCTTA
* * * *
16374815 GACATGGAATGAACTCCCTACGCCTAAGCCAACCCATGAAACGGGCATGCGGGCGCTCAGTCGAC
320 GACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGCGCTCAGTCGAG
* * * *
16374880 CGAAGAGGTAGAATGCGTAAGCTGGGGATCGGCTCGATCCCCCCTGCGTGTTGCCGATCCTACTG
385 CGAAGAGGCAGAATGCGTAAGCTGGGGATCGGCTCGGT-CCCCCTGCGTGCTGCCGATCCTGCTG
* * * *
16374945 CCGTAACCCTCGGTCCGATCTGATCTTAGACTGGGAATAAACTCTGTAT
449 CCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTAT
* * * ** *
16374994 GCTTACACATAGAATGAACTCTATATGCCTAAGC-CAACCCACGAAACGAGCGTGTGGGCGCTCA
1 GCTTAGAC-TGGGATGAACTCCGTATGCCTAAGCTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * * * *
16375058 GCCGGTCGAAGAGGTAGAATGCGCAAGCCAGGGACAGGCCTGGT--GCCTACGTGCTGTCGATCT
65 GCCAGTCGGAGAGGTAGAATGAGCAAGCC-GGGACA-GCCCGATCCCCCTGCGTGCTGTCAATCC
* * * * * * *
16375121 TGCTATCGCATCACTCGGTCCGATCTGATCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAA
128 TGCTACCACAACCCTCTGTCCGATCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAA
* * *** * * * * * *
16375186 CCCACAAAACGAATGTTTGGGTGCTGAGCC-GACCGGAGAGGCATAATGCCCAAGACGGAGATCG
193 CCCACGAAATGGGCGTTCGGGTGCTGAGCCAG-CCGAAGAGGCATAATGCGCAAGCCGGGGATCA
* * ** *
16375250 GCCCGATCCTCCTCTGCGTGCTGTCAACCCCGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGA
257 ACCCGATCCCCCTCTGCGTGCTGTCAGTCCCGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGA
*
16375315 CATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGCGGTCAG-C-AGGC
322 CATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGCGCTCAGTCGA-GC
* * * * * *
16375378 CAGAGAGGCAGAATGCGCAAG-TCGGGGATCGGTTCGGACCCCCTGCGTGTTGTCGATCCTGCTG
386 GA-AGAGGCAGAATGCGTAAGCT-GGGGATCGGCTCGGTCCCCCTGCGTGCTGCCGATCCTGCTG
* ** * *
16375442 TCGCAACCCTCGGTTTGATCCGATCTTAGATTGGGAATGAACTCTGTAT
449 CCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTAT
16375491 GCTTAGACTAGGGATGAACTC
1 GCTTAGACT-GGGATGAACTC
16375512 TGTCAACCCA
Statistics
Matches: 1276, Mismatches: 203, Indels: 85
0.82 0.13 0.05
Matches are distributed among these distances:
496 2 0.00
497 87 0.07
498 259 0.20
499 75 0.06
500 353 0.28
501 348 0.27
502 148 0.12
503 4 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.21
Consensus pattern (497 bp):
GCTTAGACTGGGATGAACTCCGTATGCCTAAGCTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCAGTCGGAGAGGTAGAATGAGCAAGCCGGGACAGCCCGATCCCCCTGCGTGCTGTCAATCCTGC
TACCACAACCCTCTGTCCGATCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCC
ACGAAATGGGCGTTCGGGTGCTGAGCCAGCCGAAGAGGCATAATGCGCAAGCCGGGGATCAACCC
GATCCCCCTCTGCGTGCTGTCAGTCCCGCTACCACAACCCTCGGTCCGGCTGGGGCTTAGACATG
GAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGCGCTCAGTCGAGCGAAGA
GGCAGAATGCGTAAGCTGGGGATCGGCTCGGTCCCCCTGCGTGCTGCCGATCCTGCTGCCGCAAC
CCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:16374988 original size:158 final size:157
Alignment explanation
Indices: 16374494--16374995 Score: 508
Period size: 158 Copynumber: 3.2 Consensus size: 157
16374484 ACTCCGTATG
* *
16374494 CTTAGACTGGGGATGAACTCCGTATGCCTAA-CTCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGC-CAACCCATGAAACGGGCGTGCGGGCGCTCAG
* * * * *
16374558 CCAGTCGGAGAGGTAGAATGAGCAAG-TCGGGAGCTAGCCCGATCCCTCCTGCGTGCTGTCAATC
65 CCAGTCGGAGAGGTAGAATGCGCAAGCTGGGGATC-GGCCCGATCCCTCCTGCGTGCTGTCGATC
* * *
16374622 CTGCTACCGAAACCCTCTGTCCGGTCTGAT
129 CTGCTGCCGTAACCCTCGGTCC-GTCTGAT
* * * * * * * *
16374652 CTTAGACTAGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGGGCGTTCGGGTGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGC
* * * * * * *
16374717 CAGTCGGAGAGGCATAATGCACAACCTGGGGATCGCCCCGATCCCTTTCTGCGTGCTGTCGGTCC
66 CAGTCGGAGAGGTAGAATGCGCAAGCTGGGGATCGGCCCGATCCC-TCCTGCGTGCTGTCGATCC
* * * **
16374782 CGCTGCCATAACCCTCGGTCCGGCTGGGG
130 TGCTGCCGTAACCCTCGGTCCGTCT-GAT
* * *
16374811 CTTAGACAT-GGAATGAACTCCCTACGCCTAAGCCAACCCATGAAACGGGCATGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
* * * * * * * *
16374875 TC-GACCGAAGAGGTAGAATGCGTAAGCTGGGGATCGGCTCGATCCCCCCTGCGTGTTGCCGATC
65 CCAG-TCGGAGAGGTAGAATGCGCAAGCTGGGGATCGGCCCGATCCCTCCTGCGTGCTGTCGATC
*
16374939 CTACTGCCGTAACCCTCGGTCCGATCTGAT
129 CTGCTGCCGTAACCCTCGGTCCG-TCTGAT
* *
16374969 CTTAGACTGGGAATAAACTCTGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
16374996 TTACACATAG
Statistics
Matches: 271, Mismatches: 65, Indels: 16
0.77 0.18 0.05
Matches are distributed among these distances:
157 1 0.00
158 142 0.52
159 127 0.47
160 1 0.00
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGC
CAGTCGGAGAGGTAGAATGCGCAAGCTGGGGATCGGCCCGATCCCTCCTGCGTGCTGTCGATCCT
GCTGCCGTAACCCTCGGTCCGTCTGAT
Found at i:16376214 original size:26 final size:26
Alignment explanation
Indices: 16376177--16376229 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16376167 GGCTCAAACT
* *
16376177 CTTAGACTTGGAATGAACTCCTTATG
1 CTTAGACATGGAATGAACTCCGTATG
16376203 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
16376229 C
1 C
16376230 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:16376493 original size:158 final size:158
Alignment explanation
Indices: 16376202--16376509 Score: 357
Period size: 158 Copynumber: 1.9 Consensus size: 158
16376192 AACTCCTTAT
* * *
16376202 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACGCACGAAACAAGCGTGCGTGGGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGGGCTCAA
* * * **** ** * * *
16376267 CCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCCCGGTTCCCCTCTGCGTGCTACCGATC
66 CCGACCGGAAAGACAGAATAAAAAAGCCAGAGATCGGCCCGGATCCCCCCTGCGTGCTACCGATC
* *
16376332 TGCTGCCATAACCCTTGGTCCAGCTGGG
131 TGCTGCCACAACCCTCGGTCCAGCTGGG
** * *
16376360 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGTGGGGGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGGGCTCAA
** * * * *
16376425 TTGATCGGAAAGACAGAATAAAAAAGCCAGAGATTGGCCC-GATCCCCCCTGCGTGGTGCCGATC
66 CCGACCGGAAAGACAGAATAAAAAAGCCAGAGATCGGCCCGGATCCCCCCTGCGTGCTACCGAT-
16376489 CTGCTGCCACAACCCTCGGTC
130 CTGCTGCCACAACCCTCGGTC
16376510 TAGTCCGATC
Statistics
Matches: 122, Mismatches: 27, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
157 19 0.16
158 103 0.84
ACGTcount: A:0.24, C:0.30, G:0.29, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGGGCTCAA
CCGACCGGAAAGACAGAATAAAAAAGCCAGAGATCGGCCCGGATCCCCCCTGCGTGCTACCGATC
TGCTGCCACAACCCTCGGTCCAGCTGGG
Found at i:16376570 original size:26 final size:26
Alignment explanation
Indices: 16376519--16376571 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16376509 CTAGTCCGAT
*
16376519 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCATATG
*
16376545 CTTAGACTGGGAATGAAC-CTCATATG
1 CTTAAACTGGGAATGAACTC-CATATG
16376571 C
1 C
16376572 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCATATG
Found at i:16378102 original size:26 final size:26
Alignment explanation
Indices: 16378051--16378103 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16378041 CCGATCTGAT
* *
16378051 CTTAGATTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
16378077 CTTAGACTGGGTATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16378103 C
1 C
16378104 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16379679 original size:26 final size:26
Alignment explanation
Indices: 16379631--16379680 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
16379621 ATCCGATCTC
*
16379631 AGATTAGGAATGAACTCCGTATGCTT
1 AGATTAGGAATGAACTCCATATGCTT
* * *
16379657 AGATTGGGGATGAACTCTATATGC
1 AGATTAGGAATGAACTCCATATGC
16379681 CTAAGTCAAC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (26 bp):
AGATTAGGAATGAACTCCATATGCTT
Found at i:16386868 original size:11 final size:11
Alignment explanation
Indices: 16386852--16386878 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
16386842 GGCTCTCCAA
16386852 CGATGCTCTGG
1 CGATGCTCTGG
16386863 CGATGCTCTGG
1 CGATGCTCTGG
16386874 CGATG
1 CGATG
16386879 GTGCCCCTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.11, C:0.26, G:0.37, T:0.26
Consensus pattern (11 bp):
CGATGCTCTGG
Found at i:16386986 original size:26 final size:26
Alignment explanation
Indices: 16386948--16387000 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16386938 GGCTCAAACT
16386948 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
16386974 CTTAGAC-ATGGAATGAACTCTGTATG
1 CTTAGACTA-GGAATGAACTCTGTATG
16387000 C
1 C
16387001 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:16387320 original size:26 final size:26
Alignment explanation
Indices: 16387291--16387343 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16387281 CCGGTCTGAT
* *
16387291 CTTAGACTATGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
16387317 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16387343 C
1 C
16387344 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16387517 original size:26 final size:26
Alignment explanation
Indices: 16387488--16387540 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16387478 CCGGTCTGAT
* *
16387488 CTTAGAC-TGGTAATGAACTCTGTATG
1 CTTAGACATGG-AATGAACACCGTATG
16387514 CTTAGACATGGAATGAACACCGTATG
1 CTTAGACATGGAATGAACACCGTATG
16387540 C
1 C
16387541 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACACCGTATG
Found at i:16387761 original size:19 final size:19
Alignment explanation
Indices: 16387737--16387774 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
16387727 GCAGAATGCA
16387737 TAAGTCGGGGATCGACCTG
1 TAAGTCGGGGATCGACCTG
16387756 TAAGTCGGGGATCGACCTG
1 TAAGTCGGGGATCGACCTG
16387775 GTCCCCCCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.21, C:0.21, G:0.37, T:0.21
Consensus pattern (19 bp):
TAAGTCGGGGATCGACCTG
Found at i:16387879 original size:26 final size:26
Alignment explanation
Indices: 16387841--16387893 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16387831 TCGGTCTGAT
16387841 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16387867 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16387893 C
1 C
16387894 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16388885 original size:26 final size:26
Alignment explanation
Indices: 16388856--16388908 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16388846 TCGATCTGAA
16388856 CTTAGACTGGGAATGAACTT-CGTATG
1 CTTAGACTGGGAATGAA-TTGCGTATG
*
16388882 CTTAGACTGGGGATGAATTGCGTATG
1 CTTAGACTGGGAATGAATTGCGTATG
16388908 C
1 C
16388909 CTAAGTCAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.25, C:0.15, G:0.30, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAATTGCGTATG
Found at i:16389582 original size:26 final size:26
Alignment explanation
Indices: 16389543--16389595 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16389533 GGCTCAAACT
*
16389543 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
16389569 CTTAGACATA-GAATGAACTCCATATG
1 CTTAGAC-TAGGAATGAACTCCATATG
16389595 C
1 C
16389596 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:16391174 original size:26 final size:26
Alignment explanation
Indices: 16391145--16391195 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16391135 TAATCTGATC
*
16391145 TTAGAC-TGGGAATGAACTCTGTATGT
1 TTAGACAT-GGAATGAACTCCGTATGT
16391171 TTAGACATGGAATGAACTCCGTATG
1 TTAGACATGGAATGAACTCCGTATG
16391196 CCTAAGCCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.31
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGTATGT
Found at i:16392747 original size:26 final size:26
Alignment explanation
Indices: 16392695--16392747 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16392685 CTGATCCGAT
*
16392695 CTTAGACTGGGAATGAACTCTGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
* *
16392721 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
16392747 C
1 C
16392748 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:16393420 original size:26 final size:26
Alignment explanation
Indices: 16393391--16393443 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
16393381 GGCTCAAACT
*
16393391 CTTAAAC-TGGGAATGAACTCAGTATG
1 CTTAAACAT-GGAATAAACTCAGTATG
* *
16393417 CTTAGACATGGAATAAACTCCGTATG
1 CTTAAACATGGAATAAACTCAGTATG
16393443 C
1 C
16393444 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAAACATGGAATAAACTCAGTATG
Found at i:16393773 original size:26 final size:26
Alignment explanation
Indices: 16393732--16393784 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16393722 CTGATCTGAT
16393732 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16393758 CTTAGACTAAGG-ATGAACTCCGTATG
1 CTTAGACT-AGGAATGAACTCCGTATG
16393784 C
1 C
16393785 CTAAATCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16394480 original size:26 final size:26
Alignment explanation
Indices: 16394429--16394481 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16394419 CTGATCCGAT
* *
16394429 CTTAGACTGGGAATGAACTCTATATG
1 CTTACACTGGGAATGAACTCCATATG
* *
16394455 CTTACACTGGGGATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
16394481 C
1 C
16394482 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:16395189 original size:26 final size:26
Alignment explanation
Indices: 16395151--16395229 Score: 133
Period size: 26 Copynumber: 3.0 Consensus size: 26
16395141 GGCTCAAACT
16395151 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
16395177 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
*
16395203 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAATGAACTCCGTATG
16395229 C
1 C
16395230 CTAAGCCAAC
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
26 50 0.98
27 1 0.02
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:16395695 original size:159 final size:158
Alignment explanation
Indices: 16395203--16395698 Score: 433
Period size: 159 Copynumber: 3.1 Consensus size: 158
16395193 ACTCCGTATG
* *
16395203 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCGGGAGCTCAGC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAAAGAGCATGCGGGCGCTCAGC
* * * ** * *
16395268 CGGTCGGAGAGGCAAAATGCACAAGCCGAGGATCGGCCCGATCCCCATCTGTATGTTGTCGGTCC
66 CGGTCGGAGAGGCAAAATGCGCAAGCCGGGGATAGGCCCG-TCCCCATCTGCGTGCTGTCGATCC
* * *
16395333 TACTACCACAACCCTCGATCCGATCTGAT
130 TACTGCCACAACCTTCGATCCGATCCGAT
* * * * * * *
16395362 CTTATAC-TGTGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATTCGAGCGCTGAG
1 CTTAGACATG-GAATGAACTCCATATGCCTAAGCCAACCCACGAAAAGAGCATGCGGGCGCTCAG
* * * * * * * * * *
16395426 CCTGTCGGAGAGGCATAATGTGCAAGTCGGTGATAAGCTCGGTCCCCTTCTGCGTGCTG-CCAGC
65 CCGGTCGGAGAGGCAAAATGCGCAAGCCGGGGATAGGC-CCGTCCCCATCTGCGTGCTGTCGATC
* * * * ** **
16395490 CTCGCTGCCACAACCCTTAG-TCTGGTTGGGG
129 CT-ACTGCCACAA-CCTTCGATCCGATCCGAT
* * * * * * *
16395521 CTTAGACATGCAATGAACTCCCTATGCCAAAGCCAACCCATGAAAAGGGCGTGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAAAGAGCATGCGGGCGCTCAGC
* * * * **
16395586 CGGCCGGAGACGCAGAATGCGCAAGCCGGGGATTGGCCCAGTCCCCCCCTGCGTGCTGTCGATCC
66 CGGTCGGAGAGGCAAAATGCGCAAGCCGGGGATAGGCCC-GTCCCCATCTGCGTGCTGTCGATCC
* *
16395651 TACTGTCGCAACCTTCGATCCGATCCGAT
130 TACTGCCACAACCTTCGATCCGATCCGAT
16395680 CTTAGAC-TGGGAATGAACT
1 CTTAGACAT-GGAATGAACT
16395699 TTGTATGCTT
Statistics
Matches: 255, Mismatches: 73, Indels: 18
0.74 0.21 0.05
Matches are distributed among these distances:
158 13 0.05
159 229 0.90
160 13 0.05
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAAAGAGCATGCGGGCGCTCAGC
CGGTCGGAGAGGCAAAATGCGCAAGCCGGGGATAGGCCCGTCCCCATCTGCGTGCTGTCGATCCT
ACTGCCACAACCTTCGATCCGATCCGAT
Found at i:16396739 original size:26 final size:26
Alignment explanation
Indices: 16396703--16396755 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16396693 CTGGTTCGAT
*
16396703 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16396729 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
16396755 C
1 C
16396756 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16396892 original size:184 final size:184
Alignment explanation
Indices: 16396545--16397089 Score: 539
Period size: 184 Copynumber: 3.0 Consensus size: 184
16396535 TCTGGCTGGG
* * * * * * * * *
16396545 GCTTAGACATGGAATGAACTCCCTATGCCCAAG-CAACGCATGAAACGGGAGTGCGGGCGCTCGG
1 GCTTAGACATGAAATGAACTCCATATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCACTC-A
* * * * * * *
16396609 TCGGCTAGAA-AAGCAGAATGCACAAGCCAGGGATCGACTCGGTCCCCCCTACGTGCTGTCGATC
65 ACCGATGGAAGAGGCAGAATGCACAAGCCAGGGATCGACCCGGTCCCCCATACGTGCTGTCGATC
16396673 CTGCTGTCGCAACCCTCAGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTAT
130 CTGCTGTCGCAACCCTCAGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTAT
** * *
16396728 GCTTAGAC-TGGGGATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCA
1 GCTTAGACAT-GAAATGAACTCCATATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCACTCA
* * *
16396792 ACCGATGGAAGAGGCAGAATGCATAAGTC-GAGGATCGACCCGGTCCCCCATACGTGCTG-CTGG
65 ACCGATGGAAGAGGCAGAATGCACAAGCCAG-GGATCGACCCGGTCCCCCATACGTGCTGTC-GA
* * * * *
16396855 TCCTGCTGTCGTAACCCTCGGTTTGGTTCGATCTTAGACTTGGAATGAACTTCGTAT
128 TCCTGCTGTCGCAACCCTCAGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTAT
* * *** *
16396912 GCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAACCCATAAAATGAGCGTGCGGTTGCTCAG
1 GCTTAGACATGAAATGAACTCCATATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCACTCAA
* * * ** * * * * * *
16396977 CCGACCGG-AGAGGCAAAATGCATAAGCTGGGGACCGACCCGATCCCCCCTATGTACTATCGA-C
66 CCGA-TGGAAGAGGCAGAATGCACAAGCCAGGGATCGACCCGGTCCCCCATACGTGCTGTCGATC
* * *
16397040 CTTGCTGTCGCAACCCTCAATCCGG-TCTGATCTTAGACTAGGAATGAACT
130 C-TGCTGTCGCAACCCTCAGTCTGGTTC-GATCTTAGACTGGGAATGAACT
16397090 TTGTATGCCT
Statistics
Matches: 301, Mismatches: 50, Indels: 21
0.81 0.13 0.06
Matches are distributed among these distances:
182 1 0.00
183 40 0.13
184 255 0.85
185 5 0.02
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (184 bp):
GCTTAGACATGAAATGAACTCCATATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCACTCAA
CCGATGGAAGAGGCAGAATGCACAAGCCAGGGATCGACCCGGTCCCCCATACGTGCTGTCGATCC
TGCTGTCGCAACCCTCAGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:16396916 original size:26 final size:26
Alignment explanation
Indices: 16396887--16396939 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16396877 TTGGTTCGAT
* * *
16396887 CTTAGACTTGGAATGAACTTCGTATG
1 CTTAGACATGAAATGAACTCCGTATG
16396913 CTTAGACATGAAATGAACTCCGTATG
1 CTTAGACATGAAATGAACTCCGTATG
16396939 C
1 C
16396940 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACATGAAATGAACTCCGTATG
Found at i:16397378 original size:26 final size:26
Alignment explanation
Indices: 16397349--16397401 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16397339 CCGATCTGAT
* *
16397349 CTTAGACTGTGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16397375 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16397401 C
1 C
16397402 CTGAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16398109 original size:26 final size:26
Alignment explanation
Indices: 16398071--16398123 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16398061 GGCTCAAACT
16398071 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16398097 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
16398123 C
1 C
16398124 CCAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16399064 original size:159 final size:158
Alignment explanation
Indices: 16398636--16399102 Score: 440
Period size: 158 Copynumber: 2.9 Consensus size: 158
16398626 AACTCCGCAT
* ** * *
16398636 GCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGTGTGCGGGGGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
16398701 TTGGCCGGAGAGGTAGAATGTGCAAGCTGAGGACCGGCCTGATCCCCC-CTGCGTGCTATCGATC
66 TCGGCCGGAGAGGAAGAATGTGCAAGCCGAGGATC-GCCTGGTCCCCCTCTACATGCTATCGATC
* ** * * *
16398765 CTACTGCTGCAACCCTCGATCTGTTCCAT
130 CTGCTGCCACAACCCTCGATCTGTGCAAG
* * * * * *
16398794 TCTTAGA-TTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGGAACGAGCGTTCGGGTGCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
** * * * * * * *
16398858 ACCGGCCGGAGAGGAATAATGCGTAAGCCGAGGATTGGCTGGATCCCCCTCTACATGCTGTCGGT
65 GTCGGCCGGAGAGGAAGAATGTGCAAGCCGAGGATCGCCTGG-TCCCCCTCTACATGCTATCGAT
16398923 CCTGCTGCCACAACCCTC-AGTCTG-GCAAGG
129 CCTGCTGCCACAACCCTCGA-TCTGTGCAA-G
* * * * *
16398953 GCTTAGACATGGAATGAACTCCTTAAGCCTAAGCCAATCCATGAAACGGGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
16399018 TCGGTCGAAGAGGCAGAATGTGCAAGCCGAGGATCGACCCGGT-CCCCTCTATATGCTACCGATC
66 TCGGCCGGAGAGGAAGAATGTGCAAGCCGAGGATCG-CCTGGTCCCCCTCTACATGCTATCGATC
*
16399082 CTGCTGTCACAACCCTCGATC
130 CTGCTGCCACAACCCTCGATC
16399103 CGGTTCGATC
Statistics
Matches: 242, Mismatches: 59, Indels: 16
0.76 0.19 0.05
Matches are distributed among these distances:
157 5 0.02
158 122 0.50
159 111 0.46
160 4 0.02
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
TCGGCCGGAGAGGAAGAATGTGCAAGCCGAGGATCGCCTGGTCCCCCTCTACATGCTATCGATCC
TGCTGCCACAACCCTCGATCTGTGCAAG
Found at i:16399150 original size:26 final size:26
Alignment explanation
Indices: 16399112--16399164 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16399102 CCGGTTCGAT
16399112 CTTAGACTGGGAATGAACTCTCTATG
1 CTTAGACTGGGAATGAACTCTCTATG
*
16399138 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTCTATG
16399164 C
1 C
16399165 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTCTATG
Found at i:16399441 original size:343 final size:343
Alignment explanation
Indices: 16398951--16399577 Score: 829
Period size: 343 Copynumber: 1.8 Consensus size: 343
16398941 AGTCTGGCAA
* * * **
16398951 GGGCTTAGACATGGAATGAACTCCTTAAGCCTAAGCCAATCCATGAAACGGGCGTGCGGGCACTC
1 GGGCTTAGACATGGAATGAAATCCCTAAGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCACTC
* *
16399016 AGTCGGTCGAAGAGGCAGAATGTGCAAGCCGAGGATCGACCCGGTCCCCTCTATATGCTACCGAT
66 AGCCGGTCGAAGAGGCAGAATGTGCAAGCCGAGGATCGACCCGGTCCCCTCTACATGCTACCGAT
** * *
16399081 CCTGCTGTCACAACCCTCGATCCGGT-TCGATCTTAGACTGGGAATGAACTCTC-TATGCTTAGA
131 CCTGCTCCCACAACCCTCGATCCGGTCT-GATCTCAGACTGAGAATGAACTC-CATATGCTTAGA
* * *
16399144 CAT-GGAATGAACTCTGTATGCCTAAGCCAACCAACGAAACAAT-CGTGTAGGTGCTTAGCCGAC
194 C-TGGGAATGAACTCTGTATGCCTAAGCCAACCAACGAAAC-ATGCGTGCAGGCGCTCAGCCGAC
* * *
16399207 CGGAGAGGCA-GAATGCACAAGCCGGGGACCGGCCCGATCCCCTTCTGCATGCTACCGATCTCAT
257 CAGAAAGACATG-ATGCACAAGCCGGGGACCGGCCCGATCCCCTTCTGCATGCTACCGATCTCAT
16399271 TGCCACAATCCTCGGTCCGACTG
321 TGCCACAATCCTCGGTCCGACTG
* * *
16399294 GGGCTTAGACATGGAATGAAATCCCTATGCCTAAGCCAACCCACAAAATGGGCGTGCGGGCGCTC
1 GGGCTTAGACATGGAATGAAATCCCTAAGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCACTC
* * * **
16399359 AGCCGGTCGGAGAGGCAGAATGTGCAAGCC-AGGGATC-AGCCCGGT-CCCTCCTGCGTGCTGTC
66 AGCCGGTCGAAGAGGCAGAATGTGCAAGCCGA-GGATCGA-CCCGGTCCCCT-CTACATGCTACC
** **
16399421 GATCCTGCTCCCGTAACCCTCGATTTGGTCTGATCTCAGACTGAGAATGAACTCCATATGCTTAG
128 GATCCTGCTCCCACAACCCTCGATCCGGTCTGATCTCAGACTGAGAATGAACTCCATATGCTTAG
* * * *
16399486 ACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACATGCGTGCGGGCGCTCAGCCGACC
193 ACTGGGAATGAACTCTGTATGCCTAAGCCAACCAACGAAACATGCGTGCAGGCGCTCAGCCGACC
16399551 AGAAAGACATGATGCACAAGCCGGGGA
258 AGAAAGACATGATGCACAAGCCGGGGA
16399578 TCGAACGGGT
Statistics
Matches: 243, Mismatches: 33, Indels: 16
0.83 0.11 0.05
Matches are distributed among these distances:
342 10 0.04
343 231 0.95
344 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.20
Consensus pattern (343 bp):
GGGCTTAGACATGGAATGAAATCCCTAAGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCACTC
AGCCGGTCGAAGAGGCAGAATGTGCAAGCCGAGGATCGACCCGGTCCCCTCTACATGCTACCGAT
CCTGCTCCCACAACCCTCGATCCGGTCTGATCTCAGACTGAGAATGAACTCCATATGCTTAGACT
GGGAATGAACTCTGTATGCCTAAGCCAACCAACGAAACATGCGTGCAGGCGCTCAGCCGACCAGA
AAGACATGATGCACAAGCCGGGGACCGGCCCGATCCCCTTCTGCATGCTACCGATCTCATTGCCA
CAATCCTCGGTCCGACTG
Found at i:16400216 original size:26 final size:26
Alignment explanation
Indices: 16400178--16400230 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16400168 GGCTCAAAAT
16400178 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16400204 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16400230 C
1 C
16400231 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16401063 original size:26 final size:26
Alignment explanation
Indices: 16401026--16401085 Score: 72
Period size: 26 Copynumber: 2.4 Consensus size: 26
16401016 CCTCAGCTTG
16401026 GTCCG-AT-CTTAGAC-TGGAAATGAA
1 GTCCGTATGCTTAGACATGG-AATGAA
16401050 GTCCGTATGCTTAGACATGGAATGAA
1 GTCCGTATGCTTAGACATGGAATGAA
* *
16401076 TTTCGTATGC
1 GTCCGTATGC
16401086 CTAAGTCAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
24 5 0.16
25 2 0.06
26 21 0.68
27 3 0.10
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
GTCCGTATGCTTAGACATGGAATGAA
Found at i:16401215 original size:197 final size:197
Alignment explanation
Indices: 16400861--16401216 Score: 421
Period size: 197 Copynumber: 1.8 Consensus size: 197
16400851 TCCGACTGGG
*
16400861 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAA
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAA
* * ** * * * *
16400926 CTAACCAGAGAGGTAGAATGTGCAAGCTGAGGATCGGCTCGGTCCCCTCCTGCGTGCTGTTGATC
66 CTAACCAGAGAGGCAGAATGCGCAAGCTGAGGATCAACCCGATCCCCTCCTACGTGCTGTCGATC
* * * * * *
16400991 CTGCTACTGGTCCTGCTATCGCAACCCTCAGCTTGGTCCGATCTTAGACTGGAAATGAAGTCCGT
131 CCGCTACCGATCCTACTACCACAACCCTCAGCTTGGTCCGATCTTAGACTGGAAATGAAGTCCGT
16401056 AT
196 AT
* * * * *
16401058 GCTTAGACATGGAATGAA-TTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCT
1 GCTTAGACATGGAATGAACTCT-GTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCA
* *** * *
16401122 GCTGGTC-GAAGAGGCATAATGCGCAAGCTGGGGATCAACCCGATCCCC-CTCTACGTGCTGTCG
65 ACTAACCAG-AGAGGCAGAATGCGCAAGCTGAGGATCAACCCGATCCCCTC-CTACGTGCTGTCG
*
16401185 ATCCCGCTACCGATCCTACTGCCACAACCCTC
128 ATCCCGCTACCGATCCTACTACCACAACCCTC
16401217 GGTCCAGCTG
Statistics
Matches: 129, Mismatches: 27, Indels: 6
0.80 0.17 0.04
Matches are distributed among these distances:
196 4 0.03
197 125 0.97
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (197 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAA
CTAACCAGAGAGGCAGAATGCGCAAGCTGAGGATCAACCCGATCCCCTCCTACGTGCTGTCGATC
CCGCTACCGATCCTACTACCACAACCCTCAGCTTGGTCCGATCTTAGACTGGAAATGAAGTCCGT
AT
Found at i:16401577 original size:159 final size:158
Alignment explanation
Indices: 16401190--16401593 Score: 413
Period size: 158 Copynumber: 2.6 Consensus size: 158
16401180 TGTCGATCCC
* *
16401190 GCTACCGATCCTACTGCCACAACCCTCGGTCC-AGCTGGGGCCTAGACATGGAATGAACTCTGTA
1 GCTACCGATCCTGCTGCCACAACCCTCGGTCCGA-CTGGGGCTTAGACATGGAATGAACTCTGTA
* * * *
16401254 TGCCTAAGCCAACCCACGAAACGACCGCGCGGGCACTCGGCCGGTCGGAGAGGCACAATCCGTAA
65 TGCCTAAGCCAACCCACGAAACGACCGCGCGGACACTCGGCCGATCGAAGAGGCACAATCCGCAA
16401319 GCCAAGGATCGACCCAACCCCCCCTGCGT
130 GCCAAGGATCGACCCAACCCCCCCTGCGT
** * ** * * * **
16401348 GCTGTCGATCCTGCTACCGTAACCTTCAGTCCAGTCT-GATCTTAGAC-TAGGAATGAACTCTGT
1 GCTACCGATCCTGCTGCCACAACCCTCGGTCC-GACTGGGGCTTAGACAT-GGAATGAACTCTGT
* * * ** * * *
16401411 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGATGCT-GAGCCGATCGAATAGGCATAATTCGC
64 ATGCCTAAGCCAACCCACGAAACGACCGCGCGGACACTCG-GCCGATCGAAGAGGCACAATCCGC
*** ** *
16401475 AAGCTGGGGATC-AGCCCGGTCCCCCTCTGCGT
128 AAGCCAAGGATCGA-CCC-AACCCCCCCTGCGT
* * **
16401507 GCTACCGATCCTGTTGCTACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTAT
1 GCTACCGATCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCTGTAT
16401572 GCCTAAGCCAACCCACGAAACG
66 GCCTAAGCCAACCCACGAAACG
16401594 GGCTTACGGG
Statistics
Matches: 193, Mismatches: 45, Indels: 15
0.76 0.18 0.06
Matches are distributed among these distances:
157 3 0.02
158 110 0.57
159 79 0.41
160 1 0.01
ACGTcount: A:0.24, C:0.33, G:0.25, T:0.19
Consensus pattern (158 bp):
GCTACCGATCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCTGTAT
GCCTAAGCCAACCCACGAAACGACCGCGCGGACACTCGGCCGATCGAAGAGGCACAATCCGCAAG
CCAAGGATCGACCCAACCCCCCCTGCGT
Found at i:16401724 original size:26 final size:26
Alignment explanation
Indices: 16401687--16401738 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16401677 GCTCAAACTT
*
16401687 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCATATGC
16401713 TTAGACAT-GGAATGAACTCCATATGC
1 TTAGAC-TGGGAATGAACTCCATATGC
16401739 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:16402442 original size:26 final size:26
Alignment explanation
Indices: 16402401--16402453 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16402391 CCGGTCTGAT
*
16402401 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
16402427 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16402453 C
1 C
16402454 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16403109 original size:26 final size:26
Alignment explanation
Indices: 16403071--16403123 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16403061 GGCTCAAAAT
16403071 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16403097 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16403123 C
1 C
16403124 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16410743 original size:26 final size:26
Alignment explanation
Indices: 16410707--16410757 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16410697 CTGGTTCAAT
*
16410707 CTTAGACTGGGAATGAACTCCATATC
1 CTTAGACTGGGAATAAACTCCATATC
*
16410733 CTTAGACTGGGGATAAACTCCATAT
1 CTTAGACTGGGAATAAACTCCATAT
16410758 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATC
Found at i:16411294 original size:26 final size:26
Alignment explanation
Indices: 16411245--16411294 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
16411235 TAGACTTTGA
*
16411245 ATGAACTCCGTATGCTTAGATCAAGG
1 ATGAACTCCGTATGCTAAGATCAAGG
16411271 ATGAACTCCGTATGCCTAAG-TCAA
1 ATGAACTCCGTATG-CTAAGATCAA
16411295 CCCATGAAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.26
Consensus pattern (26 bp):
ATGAACTCCGTATGCTAAGATCAAGG
Found at i:16412704 original size:26 final size:26
Alignment explanation
Indices: 16412653--16412705 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
16412643 GGCTCAAACT
*
16412653 CTTAGACTGGGAATGAACTATGTATG
1 CTTAGACTGGGAATGAACTATATATG
16412679 CTTAGACAT-GGAATGAACTCA-ATATG
1 CTTAGAC-TGGGAATGAACT-ATATATG
16412705 C
1 C
16412706 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.34, C:0.15, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTATATATG
Found at i:16413646 original size:159 final size:159
Alignment explanation
Indices: 16413218--16413663 Score: 369
Period size: 159 Copynumber: 2.8 Consensus size: 159
16413208 AACTCCGTAT
* * * *
16413218 GCTTAGACATGGAATGAACTTCATATGCCTAAGCCAACCCACAAAACAAGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTG-GGGCGCTCAG
* ** * * * * *
16413283 CCGGTCGGAGTGGCAGAATGCGCAAGCCTGGGACCGACCCAGT--CCCTGCTATGTGCTGTCGAT
65 CCAGTTAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCAGTCCCCCTGCTACGTGCTGCCGAT
* * * * *
16413346 CCTACTGCCATAACCCTCGGTCTGATCTGA
130 CCCACTACCACAACCCTCGGTCTCAGCTGA
* * * * * * *
16413376 TCTTAGA-TTGGGAATGAACTCCTTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCG-TGGGGCGCTCA
* * * * *
16413440 GCCGACCG-TA-A-AGGCATAATGCGTAAGTCAGGGATCAGGCCGA-TCCCCCT-CTACGTGCTG
64 GCC-A--GTTAGAGAGGCAGAATGCGCAAGCCAGGGATC-GACCCAGTCCCCCTGCTACGTGCTG
* * *
16413500 CCTATCCCGCTACCACAACCC-CTGGTC-CAGCTGGG
125 CCGATCCCACTACCACAACCCTC-GGTCTCAGCT-GA
* * *
16413535 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGGAGGCACTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGG-GGCGCTCAG
* *
16413600 CCAGTTAGAGAGGCAGAATGCACAAGCCGGGGATCGACCCAGTCCCCCCTGC-A--TGCTGCCGA
65 CCAGTTAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCAGT-CCCCCTGCTACGTGCTGCCGA
16413662 TC
129 TC
16413664 ATGCTTTACC
Statistics
Matches: 221, Mismatches: 49, Indels: 36
0.72 0.16 0.12
Matches are distributed among these distances:
156 1 0.00
157 3 0.01
158 94 0.43
159 109 0.49
160 12 0.05
161 2 0.01
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGGGGCGCTCAGC
CAGTTAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCAGTCCCCCTGCTACGTGCTGCCGATC
CCACTACCACAACCCTCGGTCTCAGCTGA
Found at i:16414217 original size:26 final size:26
Alignment explanation
Indices: 16414181--16414233 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16414171 CTGATCCAAT
16414181 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
16414207 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16414233 C
1 C
16414234 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16414940 original size:26 final size:26
Alignment explanation
Indices: 16414903--16414954 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16414893 GCATAAACTG
16414903 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
16414929 TTAGACAT-GGAATGAACTCCGTATGC
1 TTAGAC-TGGGAATGAACTCCGTATGC
16414955 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:16415277 original size:26 final size:26
Alignment explanation
Indices: 16415245--16415297 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16415235 CTGATATGAT
*
16415245 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
16415271 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
16415297 C
1 C
16415298 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:16416007 original size:26 final size:26
Alignment explanation
Indices: 16415969--16416021 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16415959 GGCTCAAACT
*
16415969 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16415995 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16416021 C
1 C
16416022 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16416347 original size:26 final size:26
Alignment explanation
Indices: 16416311--16416363 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16416301 CCGATCCGAT
16416311 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
*
16416337 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
16416363 C
1 C
16416364 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:16416805 original size:158 final size:158
Alignment explanation
Indices: 16416505--16417008 Score: 392
Period size: 158 Copynumber: 3.2 Consensus size: 158
16416495 AGACCGATCT
* *
16416505 GATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCAAGAAATGAGCGTGCGGGCACTC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAATGAGCATGCGGGCACTC
* * * *
16416570 AACCGACCGAAGAGGTAGAATGCGCAAGTCGGGGATCGACCCGATCCCCCCTGCGTGCTGTTGAT
66 AACCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTACGTGCTGTCGAT
*
16416635 CCTGCTACCACAACCATTGGTTTGGTCC
131 CCCGCTACCACAACCATTGGTTTGGTCC
* *
16416663 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACA-AAATGAGCATTCGGGCACT
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCA-AGAAATGAGCATGCGGGCACT
* ** * * *
16416727 GAGTCGGCCAGAA-AGGCATAATGCGC-AGCCGGGGATCGACCCCG-TCCCCTTCTACGTGCTGT
65 CAACCGACC-GAAGAGGCAGAATGCGCAAGCCGGGGATCGA-CCCGATCCCC-CCTACGTGCTGT
* ** * * * ** * *
16416789 CGGTCCCGCTGGCACAACC-CTCGATCCGACTG
127 CGATCCCGCTACCACAACCATTGGTTTGGTC-C
** * * * * * * * *
16416821 GGGCTTAGACTTGGAATGAACTCCCTATGCCTAAGCTAACCCACA-AAACGTGCTTGCGAGCGCT
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCA-AGAAATGAGCATGCGGGCACT
* ** * * * * * * * *
16416885 CAGCTAATCGGAGAGGTAGAATGCACAAGCCGAGGATCGACCTGGTCCCCCCTGCGTGCTG-CAG
65 CAACCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTACGTGCTGTC-G
* * * * * * ** * *
16416949 ATCCTGCTGCCGCAACCCTCGATCCGATCT
129 ATCCCGCTACCACAACCATTGGTTTGGTCC
16416979 GATCTTAGACTGGGAATGAACTCCGTATGC
1 GATCTTAGACTGGGAATGAACTCCGTATGC
16417009 TTAGACTGGG
Statistics
Matches: 267, Mismatches: 69, Indels: 20
0.75 0.19 0.06
Matches are distributed among these distances:
157 25 0.09
158 219 0.82
159 23 0.09
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (158 bp):
GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAATGAGCATGCGGGCACTC
AACCGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTACGTGCTGTCGAT
CCCGCTACCACAACCATTGGTTTGGTCC
Found at i:16417011 original size:26 final size:26
Alignment explanation
Indices: 16416982--16417034 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16416972 CCGATCTGAT
16416982 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16417008 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16417034 C
1 C
16417035 CTACGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16417307 original size:343 final size:343
Alignment explanation
Indices: 16416666--16417457 Score: 964
Period size: 343 Copynumber: 2.3 Consensus size: 343
16416656 TTGGTCCGAT
* ** * * * * **
16416666 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCATTCGGGCACTGAGT
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCACTCAAC
* * * * * * * * * * * *
16416731 CGGCCAGAAAGGCATAATGCGC-AGCCGGGGATCGACCCCG--TCCCCTTCTACGTGCTGTCGGT
66 CGGTCGGAGAGGTAGAATGCACAAGTCGAGGATCG-GCTCGATTCGCC-TCTACGTGCTATCGGT
* * * *
16416793 CCCGCTGGCACAACCCTCGATCCGACTGGGGCTTAGACTTGGAATGAACTCCCTATGCCTAAGCT
129 CCCGCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATCCCTAAGCC
* * * * * * *
16416858 AACCCACAAAACGTGCTTGCGAGCGCTCAGCTAATCGGAGAGGTAGAATGCACAAGCCGAGGATC
194 AACCCACAAAACGGGCGTACGAGCGCTCAACTAACCAGAGAGGCAGAATGCACAAGCCGAGGATC
* * *
16416923 GACCTGGTCCCCCCTGCGTGCTGCAGATCCTGCTGCCGCAACCCTCGATCCGATCTGATCTTAGA
259 GACCTAGTCCCCCCTGCGTGCTACAGATCCTCCTGCCGCAACCCTCGATCCGATCTGATCTTAGA
*
16416988 CTGGGAATGAACTCCGTATG
324 CTAGGAATGAACTCCGTATG
* * * * *
16417008 CTTAGACTGGGGATGAACTCCGTATGCCTACGTCAACCCATTAAACGAGCGTGCGGGCGCTCAAT
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCACTCAAC
* * *
16417073 TGGTTGGAGAGGTAGAATGCACAAG-CTGGGGATCGGCTCGATTCGCCTCTACGTGCTATCGGTC
66 CGGTCGGAGAGGTAGAATGCACAAGTC-GAGGATCGGCTCGATTCGCCTCTACGTGCTATCGGTC
* * * *
16417137 TCGCTGCCACAACCCTGGATTCGACTGGGGCTTAGACATGGAATGAACTCCGTATCCCTAAGCCA
130 CCGCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATCCCTAAGCCA
* * ** * *
16417202 ACCCACGAAACGGGCGTACGGGCGCTCAACTGGCCAGAGAGGCAGAATGCGCAAGCTG-GAGATC
195 ACCCACAAAACGGGCGTACGAGCGCTCAACTAACCAGAGAGGCAGAATGCACAAGCCGAG-GATC
* * * * *
16417266 GGCCTAGTCCCCCCTGCGTGCTACCGATCCTCCTTCCGCAACCCTCGATCCGGTCTGATCTTGGA
259 GACCTAGTCCCCCCTGCGTGCTACAGATCCTCCTGCCGCAACCCTCGATCCGATCTGATCTTAGA
16417331 CTAGGAATGAACTCCGTATG
324 CTAGGAATGAACTCCGTATG
*
16417351 CTTAGATTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCACTCAAC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCACTCAAC
*
16417416 CGGTCGGAGAGGTAGAATGCGCAAGTCGAGGATCGGCTCGAT
66 CGGTCGGAGAGGTAGAATGCACAAGTCGAGGATCGGCTCGAT
16417458 CCCCCCTGCG
Statistics
Matches: 382, Mismatches: 62, Indels: 11
0.84 0.14 0.02
Matches are distributed among these distances:
342 74 0.19
343 303 0.79
344 5 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (343 bp):
CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCACTCAAC
CGGTCGGAGAGGTAGAATGCACAAGTCGAGGATCGGCTCGATTCGCCTCTACGTGCTATCGGTCC
CGCTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATCCCTAAGCCAA
CCCACAAAACGGGCGTACGAGCGCTCAACTAACCAGAGAGGCAGAATGCACAAGCCGAGGATCGA
CCTAGTCCCCCCTGCGTGCTACAGATCCTCCTGCCGCAACCCTCGATCCGATCTGATCTTAGACT
AGGAATGAACTCCGTATG
Found at i:16419129 original size:26 final size:26
Alignment explanation
Indices: 16419088--16419140 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16419078 CCGATCCGAT
16419088 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16419114 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCATATG
16419140 C
1 C
16419141 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16419334 original size:197 final size:196
Alignment explanation
Indices: 16419000--16419387 Score: 535
Period size: 197 Copynumber: 2.0 Consensus size: 196
16418990 TTCAGCCTAC
* * * * * * * *
16419000 CGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCTATGTGCTGCCGATCTTGCTGT
1 CGGAGAGGCAGAATGCACAAGTCGGGGATCGACCCGATCCCCCTACGTGCTGCAGATCCTACTGC
* * * *
16419065 CGTAACCCTTGATCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGGATGA
66 CGCAACCCTAGATCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACAAGGAATGA
* * * **
16419130 ACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGTGGGTGCTCAGTCGACCGGAGAGGTCGG
131 ACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAGTCGACCGGAGAGGTCGG
16419195 T
196 T
* * *
16419196 CGGAGAGGCAGAATGCACAAGTCGGGGATCGACCTGATCCCCCCTACGTGTTGTAGATCCTACTG
1 CGGAGAGGCAGAATGCACAAGTCGGGGATCGACCCGAT-CCCCCTACGTGCTGCAGATCCTACTG
* * *
16419261 CCGCAACCCTCAG-TCCGATCTGATCTTAGGCTGGGAATGAACTCCGTATGCTTAGACAAGGAAT
65 CCGCAACCCT-AGATCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACAAGGAAT
*
16419325 GAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGTCGACCGGAGAGG
129 GAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAGTCGACCGGAGAGG
16419388 CAGAATGCGT
Statistics
Matches: 166, Mismatches: 24, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
196 34 0.20
197 131 0.79
198 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.29, T:0.20
Consensus pattern (196 bp):
CGGAGAGGCAGAATGCACAAGTCGGGGATCGACCCGATCCCCCTACGTGCTGCAGATCCTACTGC
CGCAACCCTAGATCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACAAGGAATGA
ACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAGTCGACCGGAGAGGTCGG
T
Found at i:16419704 original size:159 final size:159
Alignment explanation
Indices: 16419310--16419714 Score: 386
Period size: 159 Copynumber: 2.5 Consensus size: 159
16419300 AACTCCGTAT
* * *
16419310 GCTTAGACA-AGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
1 GCTTAGACATA-GAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCA
* *
16419374 GTCGACCGGAGAGGCAGAATGCGTAAGCCAGGGACCGTCCCTGTCCCCCCCTGCGGGCTGTCGAT
65 GTCGACCGGAGAGGCAGAATGCGCAAGCCAGGGACCGTCCCTGTCCCCCCCTGCGGGCTGTCAAT
** * * * *
16419439 CTTGCTATCGCAACCTTCAGTCCAGTTCGA
130 CCCGCTACCACAACCCTCAGTCCAGCTCGA
* * ** * * * *
16419469 TCTTAGAC-TGGGAATGAACTATATATGCCTAAGTCAACCCACTAAACGAGCGTTCGGGCGCTGA
1 GCTTAGACAT-AGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCA
*** * * * * * ** *
16419533 GTCGGTTGGAGAGGCATAATGCGCAA-CTCGGGGATCG-GCCTGATCCCCCTCTGCTTGTTGTCA
65 GTCGACCGGAGAGGCAGAATGCGCAAGC-CAGGGACCGTCCCTG-TCCCCCCCTGCGGGCTGTCA
* * * * *
16419596 ATCCCGCTACCACAACCCTCGGTGCGGCTGGG
128 ATCCCGCTACCACAACCCTCAGTCCAGCTCGA
* * *
16419628 GCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGTGTGCGGGCGCTCAG
1 GCTTAGACATAGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
* *
16419693 TCGACCAGAGAGGTAGAATGCG
66 TCGACCGGAGAGGCAGAATGCG
16419715 TAAATCGAGG
Statistics
Matches: 190, Mismatches: 51, Indels: 10
0.76 0.20 0.04
Matches are distributed among these distances:
158 5 0.03
159 184 0.97
160 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.19
Consensus pattern (159 bp):
GCTTAGACATAGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
TCGACCGGAGAGGCAGAATGCGCAAGCCAGGGACCGTCCCTGTCCCCCCCTGCGGGCTGTCAATC
CCGCTACCACAACCCTCAGTCCAGCTCGA
Found at i:16420034 original size:26 final size:26
Alignment explanation
Indices: 16419983--16420035 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16419973 CCGGCCCGAT
**
16419983 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16420009 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
16420035 C
1 C
16420036 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16420120 original size:698 final size:690
Alignment explanation
Indices: 16418795--16420100 Score: 1531
Period size: 698 Copynumber: 1.9 Consensus size: 690
16418785 TGAACTCCGC
*
16418795 ATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCAGCCAGCCGGAGAGGCAGAATGCGCA
1 ATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCAGCCGGAGAGGCAGAATGCGCA
* * * * * *
16418860 AGCCGAGGATCGGTTCGATCCCCCTCTGCGTGCTGTCAGTCCCACTTCCATAACCCTTGGTTAGG
66 AGCCGAGGATCGGCTCGATCCCCCTCTGCGTGCTGTCAATCCCACTACCACAACCCTCGGTGAGG
* *
16418925 CTGGGGCTTAGAAATGGAATGAACTCACTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCG
131 CTGGGGCTTAGAAATAGAATGAACTCACTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCG
* * * * * * * *
16418990 TTCAGCCTACCGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCTATGTGCTGCCG
196 CTCAGCCGACCAGAGAGGCAGAATGCGCAAATCGAGGATCAGCCCGATCCCCCTATGTGCTACCG
16419055 ATCTTGCTGTCGTAACCCTTGATCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGA
261 ATCTTGCTGTCGTAACCCTTGATCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGA
* ** ***
16419120 CTAGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGTGGGTGCTCAGTCGACCG
326 CTAGGGATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTACGAACGCTCA-TCGACC-
* * * *
16419185 GAGAGGTCGGTCGGAGAGGCAGAATGCACAAGTCGGGGATCGACCTGATCCCCCCTACGTGTTGT
389 G-GA-----GTCGGAGAGGCAGAATGCACAAGCCAGGGATCGACCTGATCCCCCCTACGTGCTAT
* * *
16419250 AGATCCTACTGCCGCAACCCTCAGTCCGATCTGATCTTAGGCTGGGAATGAACTCCGTATGCTTA
448 AGATCCTACTGCCGCAACCCTCAGTCCGACCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
*
16419315 GACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGTCGAC
513 GACAAGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGTCGAC
*
16419380 CGGAGAGGCAGAATGCGTAAGCCAGGGACCGTCCCTGTCCCCCCCTGCGGGCTGTCGATCTTGCT
578 CGGAGAGGCAGAATGCGTAAGCCAGGGACCGTCCCGGTCCCCCCCTGCGGGCTGTCGATCTTGCT
16419445 ATCGCAACCTTCAGTCCAGTTCGATCTTAGACTGGGAATGAACTATAT
643 ATCGCAACCTTCAGTCCAGTTCGATCTTAGACTGGGAATGAACTATAT
* * * * * * * ** *
16419493 ATGCCTAAGTCAACCCACTAAACGAGCGTTCGGGCGCTGAGTCGGTTGGAGAGGCATAATGCGCA
1 ATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCAGCCGGAGAGGCAGAATGCGCA
* * * * *
16419558 A-CTCGGGGATCGGC-CTGATCCCCCTCTGCTTGTTGTCAATCCCGCTACCACAACCCTCGGTGC
66 AGC-CGAGGATCGGCTC-GATCCCCCTCTGCGTGCTGTCAATCCCACTACCACAACCCTCGGTGA
* * *
16419621 GGCTGGGGCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGTGTGCGGG
129 GGCTGGGGCTTAGAAATAGAATGAACTCACTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGG
* * * * * *
16419686 CGCTCAGTCGACCAGAGAGGTAGAATGCGTAAATCGAGGATTAGCTCGATCCCCCCTGTGTGCTA
194 CGCTCAGCCGACCAGAGAGGCAGAATGCGCAAATCGAGGATCAGCCCGAT-CCCCCTATGTGCTA
* * * *
16419751 CCGATCCTGCTGCTGGTCCTGCTGCCGTAA-CCTTCGGTCTGGTCTGATCTTAGACTGGGAATGA
258 CCGA---T-CT--T-G--CTG-T--CGTAACCCTT-GATCCGATCCGATCTTAGACTGGGAATGA
* * * * ** *
16419815 ACTTCGTATGCTTAGAC-ATGGTATGAACTCTGTATGCCTAAGCCAACCTGTGAAACGAGCGTAC
310 ACTCCATATGCTTAGACTA-GGGATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTAC
***
16419879 GAACGCTC-T-G-CC-GA-TCGGAGAGGCAGAATGTGTAAGCCAGGGA-CTGACCTGATCCCCCC
374 GAACGCTCATCGACCGGAGTCGGAGAGGCAGAATGCACAAGCCAGGGATC-GACCTGATCCCCCC
* * *
16419938 TACGTGCTATCGATCCTGA-TGCTGCAACCCTC-GATCCGGCCCGATCTTAGACTGGGAATGAAC
438 TACGTGCTATAGATCCT-ACTGCCGCAACCCTCAG-TCCGACCCGATCTTAGACTGGGAATGAAC
* ** * * *
16420001 TCTGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCG-GACGG
501 TCCGTATGCTTAGACAAGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTG-CGG
* *
16420065 GCACTCAGTCGGCCGGAGAGGCATAATGCGTAAGCC
565 GCACTCAGTCGACCGGAGAGGCAGAATGCGTAAGCC
16420101 GAGGATCTGC
Statistics
Matches: 507, Mismatches: 80, Indels: 42
0.81 0.13 0.07
Matches are distributed among these distances:
697 5 0.01
698 378 0.75
699 17 0.03
702 1 0.00
703 2 0.00
704 2 0.00
705 1 0.00
706 1 0.00
707 2 0.00
708 4 0.01
709 2 0.00
710 5 0.01
711 87 0.17
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.21
Consensus pattern (690 bp):
ATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCAGCCGGAGAGGCAGAATGCGCA
AGCCGAGGATCGGCTCGATCCCCCTCTGCGTGCTGTCAATCCCACTACCACAACCCTCGGTGAGG
CTGGGGCTTAGAAATAGAATGAACTCACTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCG
CTCAGCCGACCAGAGAGGCAGAATGCGCAAATCGAGGATCAGCCCGATCCCCCTATGTGCTACCG
ATCTTGCTGTCGTAACCCTTGATCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGA
CTAGGGATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTACGAACGCTCATCGACCGG
AGTCGGAGAGGCAGAATGCACAAGCCAGGGATCGACCTGATCCCCCCTACGTGCTATAGATCCTA
CTGCCGCAACCCTCAGTCCGACCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAAGGA
ATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGTCGACCGGAGAGG
CAGAATGCGTAAGCCAGGGACCGTCCCGGTCCCCCCCTGCGGGCTGTCGATCTTGCTATCGCAAC
CTTCAGTCCAGTTCGATCTTAGACTGGGAATGAACTATAT
Found at i:16420367 original size:26 final size:26
Alignment explanation
Indices: 16420338--16420390 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16420328 CCGATCTGAA
*
16420338 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16420364 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16420390 C
1 C
16420391 GTAAGCCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16420852 original size:184 final size:184
Alignment explanation
Indices: 16420524--16421124 Score: 571
Period size: 184 Copynumber: 3.3 Consensus size: 184
16420514 CCTGCTGCCA
** *
16420524 CAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAAC
1 CAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAAC
** * * * * *
16420589 TCTGTATGCCTAAGTCAACCCACGAAACAAGCATGCGGGCGCTCAGTCGACCAAAGAGGCAGAAT
66 TCTGTATGCCTAAGTCAACCCACGAAATGAGCGTACAGACGCTCAATCGACCAAAGAGGCAGAAT
** ** * **
16420654 GTGTAAGTCGAGGATCGACTCGATCCCCCCTGTGTGCTGT-AGATCCTACTGTCG
131 GTACAAACCGAGGATCGACTCGATCCCCCCTGTGTGCTGTCA-ATCATACTACCG
* * * *
16420708 CAACCTTC-GATCCGGTTCAATCTTAGACTGGGCATGAACTCCGTATGCTTAGACAT-GGAATGA
1 CAACCCTCAG-TCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGGATGA
* * * * ****
16420771 ACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTATAGATGCTCAATCGATTGGAGAGGCAGA
64 ACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTACAGACGCTCAATCGACCAAAGAGGCAGA
* * *
16420836 ATGTACAAACCGAGGATTGGCTCGATCCCCCCTGTGTGCTGTCAATCATGCTACCG
129 ATGTACAAACCGAGGATCGACTCGATCCCCCCTGTGTGCTGTCAATCATACTACCG
* * *
16420892 TAACCCTCAGTTCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGGATGAAC
1 CAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAAC
* * * * * * * * * * *
16420957 TCTGTATGCCTAAGTCAACCCATGAGATGAGCGTACGGGCACTC-AGCTGGCCAGAGGGGAAAAA
66 TCTGTATGCCTAAGTCAACCCACGAAATGAGCGTACAGACGCTCAATC-GACCAAAGAGGCAGAA
* * * * ** * ***
16421021 TGCACAAACCGGGGATCGACCCGATCCCTCCTGTGTGCTGTTGATCCTACCGTCG
130 TGTACAAACCGAGGATCGACTCGATCCCCCCTGTGTGCTGTCAATCATACTACCG
* * ** * *
16421076 CAACCCTCGGGTCCAGTCTGATCTTAGACTGGGACTGAACTCCCTATGC
1 CAACCCTC-AGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGC
16421125 CTAAGTCAAC
Statistics
Matches: 333, Mismatches: 77, Indels: 13
0.79 0.18 0.03
Matches are distributed among these distances:
183 4 0.01
184 293 0.88
185 36 0.11
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.23
Consensus pattern (184 bp):
CAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAAC
TCTGTATGCCTAAGTCAACCCACGAAATGAGCGTACAGACGCTCAATCGACCAAAGAGGCAGAAT
GTACAAACCGAGGATCGACTCGATCCCCCCTGTGTGCTGTCAATCATACTACCG
Found at i:16420949 original size:26 final size:26
Alignment explanation
Indices: 16420913--16420965 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16420903 TCGGTCCAAT
16420913 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
16420939 CTTAGATTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16420965 C
1 C
16420966 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16421444 original size:26 final size:26
Alignment explanation
Indices: 16421415--16421467 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16421405 CCGATCTGAT
*
16421415 CTTAGACT-GGGAATAAACTCTGTATG
1 CTTAGACTAGGG-ATAAACTCCGTATG
*
16421441 CTTAGACTAGGGATCAACTCCGTATG
1 CTTAGACTAGGGATAAACTCCGTATG
16421467 C
1 C
16421468 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATAAACTCCGTATG
Found at i:16421752 original size:26 final size:26
Alignment explanation
Indices: 16421723--16421775 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16421713 CTGGTCCGAT
*
16421723 CTTAGACT-GGGAATGAACTCTGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
16421749 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
16421775 C
1 C
16421776 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:16422469 original size:26 final size:26
Alignment explanation
Indices: 16422433--16422485 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16422423 CCGATCCTAT
*
16422433 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16422459 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16422485 C
1 C
16422486 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16423169 original size:26 final size:26
Alignment explanation
Indices: 16423132--16423182 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
16423122 GCTCTAACTC
* *
16423132 TTAGACTGGGAATGAACTCCTTATGG
1 TTAGACTGGGAATCAACTCCGTATGG
16423158 TTAGACAT-GGAATCAACTCCGTATG
1 TTAGAC-TGGGAATCAACTCCGTATG
16423183 CCTAAGCCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATCAACTCCGTATGG
Found at i:16424090 original size:26 final size:26
Alignment explanation
Indices: 16424052--16424103 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16424042 GCTCAAACTA
16424052 TTAGACTGAGAATGAACTCCGTATGC
1 TTAGACTGAGAATGAACTCCGTATGC
*
16424078 TTAGACATG-GAATGAACTCGGTATGC
1 TTAGAC-TGAGAATGAACTCCGTATGC
16424104 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGAGAATGAACTCCGTATGC
Found at i:16425346 original size:26 final size:26
Alignment explanation
Indices: 16425310--16425362 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16425300 CTAGTCTGAT
16425310 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
16425336 CTTAGACTGGGGATGAACTGCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16425362 C
1 C
16425363 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16427932 original size:23 final size:23
Alignment explanation
Indices: 16427902--16427950 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
16427892 ATGGGGTCCT
*
16427902 TCATAATAGTATTCTTCAATCCC
1 TCATAATAGCATTCTTCAATCCC
16427925 TCATAATAGCATTCTTCAATCCC
1 TCATAATAGCATTCTTCAATCCC
16427948 TCA
1 TCA
16427951 AAGGCCTCTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.31, C:0.29, G:0.04, T:0.37
Consensus pattern (23 bp):
TCATAATAGCATTCTTCAATCCC
Found at i:16432280 original size:185 final size:184
Alignment explanation
Indices: 16431889--16432309 Score: 454
Period size: 185 Copynumber: 2.3 Consensus size: 184
16431879 TCTAGATGGG
* * * * ** * ** ** *
16431889 GCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACACATTAAACGGGCGTGTAGGTGCTCAA
1 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCACGCGGGCGCTCAA
** * * *
16431954 TCGG-TCGGAGAGGTAGAATGCGCATGCCGGGGATCGGCCCGATCCCCCCTACGTGCTACCGATC
66 AAGGCT-GGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCTACGTGCTACCGATC
* * * * *
16432018 CTACTGCCTCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATAAACTCTGTAC
130 CTACTACCACAACCCTCAGTCCGGTCTAATCTTAGACCGGGAATAAACTCCGTAC
* *
16432073 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCACGCGGGCGCTCAA
1 GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCACGCGGGCGCTCAA
* **
16432138 AAGGCTGGAGAGGCAGAATGCGCAAGCCGAGGA-CTGGCCCGGTCCCCCCCTACGTGCTGTCGAT
66 AAGGCTGGAGAGGCAGAATGCGCAAGCCGAGGATC-GGCCCGAT-CCCCCCTACGTGCTACCGAT
* * * * *
16432202 CCTACTATCACAACCCTC-GATCGGGTCTAATCTTAGACCGGGAATGAATTCCGTAT
129 CCTACTACCACAACCCTCAG-TCCGGTCTAATCTTAGACCGGGAATAAACTCCGTAC
* * *
16432258 GCTTAGA-TTGGGGATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCA
1 GCTTAGACAT-GGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCA
16432310 TGTGAGCGCT
Statistics
Matches: 197, Mismatches: 35, Indels: 9
0.82 0.15 0.04
Matches are distributed among these distances:
183 1 0.01
184 88 0.45
185 108 0.55
ACGTcount: A:0.26, C:0.29, G:0.25, T:0.20
Consensus pattern (184 bp):
GCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCACGCGGGCGCTCAA
AAGGCTGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCTACGTGCTACCGATCC
TACTACCACAACCCTCAGTCCGGTCTAATCTTAGACCGGGAATAAACTCCGTAC
Found at i:16435199 original size:26 final size:26
Alignment explanation
Indices: 16435170--16435222 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16435160 CCGGTTCAAT
16435170 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
16435196 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
16435222 C
1 C
16435223 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:16435340 original size:184 final size:184
Alignment explanation
Indices: 16435011--16435380 Score: 487
Period size: 184 Copynumber: 2.0 Consensus size: 184
16435001 TTCGATTGGG
* * *
16435011 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCATGAAACGGGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAA
* * * * * * *
16435076 TCGATCAGAGAGGTAGAATGCACAAATCGGGGATCGGCCCGATCCCCCCTGCGTGCTACTGATCT
66 CCGACCAGAGAGGCAGAATGCACAAACCGGGGATCGACCCGATCCCCCCTACGTGCTACTGATCC
* *
16435141 TGCTGTCGCAACCCTCGGTCCGGT-TCAATCTTAGACTGGGAATGAACTCCGTAT
131 TACTGTCGCAACCCTCAGTCCGGTCT-AATCTTAGACTGGGAATGAACTCCGTAT
* * * *
16435195 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAATGAGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAA
* *
16435260 CCGACC-GAAGAGGCAGAATGCACAAGCCGGGGATCGACCC-AGTCCCCCCTACGTGCT-GTCGA
66 CCGACCAG-AGAGGCAGAATGCACAAACCGGGGATCGACCCGA-TCCCCCCTACGTGCTACT-GA
* * *
16435322 TCCTACTGTCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTAT
128 TCCTACTGTCGCAACCCTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTAT
16435379 GC
1 GC
16435381 CTAAGTCAAC
Statistics
Matches: 161, Mismatches: 21, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
183 3 0.02
184 157 0.98
185 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCGCTCAA
CCGACCAGAGAGGCAGAATGCACAAACCGGGGATCGACCCGATCCCCCCTACGTGCTACTGATCC
TACTGTCGCAACCCTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTAT
Found at i:16435498 original size:343 final size:343
Alignment explanation
Indices: 16434826--16435539 Score: 823
Period size: 343 Copynumber: 2.1 Consensus size: 343
16434816 TGGCTCAAAC
16434826 TCTTAGACTGGGAATGAACTCCGTATGCTTAGAAATGGAATGAACTCCGTATGCCTAAGCCAACC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGAAATGGAATGAACTCCGTATGCCTAAGCCAACC
* ** * * *
16434891 TACGAAATGAGTGTGCAGGCGCTCAGCCATCCGGAGAGGCAAAATGCGCAAGTCGGAGATCAGCC
66 CACGAAATGAGCATGCAGGCGCTCAGCCATCCGAAGAGGCAAAATGCACAAGCCGGAGATCAGCC
* * ** * *
16434956 CGATCCCCCTCTGCGTGCTATCGATCCCGCTGCCACAACCCTTGGTTCGATTGGGGCTTAGACAT
131 CGATCCCCCTCTACGTGCTATCGATCCCACTGCCACAACCCTCAGTCCGATTGGAGCTTAGACAT
* *
16435021 GGAATGAACTCCCTATGCCTAAGCTAACCCATGAAACGGGCGTGCGGGCGCTCAATCGATCAGAG
196 GGAATGAACTCCCTATGCCTAAGCTAACCCATGAAACGAGCGTGCGGGCGCTCAATCGACCAGAG
* ** * * * * * *
16435086 AGGTAGAATGCACAAATCGGGGATCGGCCCGATCCCCCCTGCGTGCTACTGATCTTGCTGTCGCA
261 AGGCAGAATGCACAAATCAAGGATCGGCCCGATCCCCCCTACATGCTACCGATCCTGCTGCCACA
16435151 ACCCTCGGTCCGGTTCAA
326 ACCCTCGGTCCGGTTCAA
* *
16435169 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGAAATGGAATGAACTCCGTATGCCTAAGCCAACC
* * * *
16435234 CATGAAATGAGCATGCGGGCGCTCAGCCGA-CCGAAGAGGCAGAATGCACAAGCCGGGGATC-GA
66 CACGAAATGAGCATGCAGGCGCTCAGCC-ATCCGAAGAGGCAAAATGCACAAGCCGGAGATCAG-
* * * ** * *
16435297 CCC-AGTCCCCC-CTACGTGCTGTCGATCCTACTGTCGTAACCCTCAGTCCGGTCT-GATCTTAG
129 CCCGA-TCCCCCTCTACGTGCTATCGATCCCACTGCCACAACCCTCAGTCCGAT-TGGAGCTTAG
** * * * *
16435359 AC-TGGGAATGAACTCTGTATGCCTAAG-TCAACCCATGAAACGAGCGTTCGGGCGTTGAGTCGA
192 ACAT-GGAATGAACTCCCTATGCCTAAGCT-AACCCATGAAACGAGCGTGCGGGCGCTCAATCGA
* * * * * *
16435422 CCGGAGAGGCATAATGCACAAGTCAAGGATCGGCTCGGTCCCCCTCTACATGCTACCGTTCCTGC
255 CCAGAGAGGCAGAATGCACAAATCAAGGATCGGCCCGATCCCCC-CTACATGCTACCGATCCTGC
***
16435487 TGCCACAACCCTCGGTCCGGTTGGG
319 TGCCACAACCCTCGGTCCGGTTCAA
* *
16435512 GCTTAGACAT-GGAATGAACTCCCTATGC
1 TCTTAGAC-TGGGAATGAACTCCGTATGC
16435540 CTAAGCCAAC
Statistics
Matches: 310, Mismatches: 53, Indels: 16
0.82 0.14 0.04
Matches are distributed among these distances:
341 2 0.01
342 125 0.40
343 181 0.58
344 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (343 bp):
TCTTAGACTGGGAATGAACTCCGTATGCTTAGAAATGGAATGAACTCCGTATGCCTAAGCCAACC
CACGAAATGAGCATGCAGGCGCTCAGCCATCCGAAGAGGCAAAATGCACAAGCCGGAGATCAGCC
CGATCCCCCTCTACGTGCTATCGATCCCACTGCCACAACCCTCAGTCCGATTGGAGCTTAGACAT
GGAATGAACTCCCTATGCCTAAGCTAACCCATGAAACGAGCGTGCGGGCGCTCAATCGACCAGAG
AGGCAGAATGCACAAATCAAGGATCGGCCCGATCCCCCCTACATGCTACCGATCCTGCTGCCACA
ACCCTCGGTCCGGTTCAA
Found at i:16435724 original size:159 final size:159
Alignment explanation
Indices: 16435195--16435718 Score: 604
Period size: 159 Copynumber: 3.3 Consensus size: 159
16435185 AACTCCGTAT
* * * *
16435195 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAATGAGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
16435260 CCGACCGAAGAGGCAGAATGCACAAGCCGGGGATCGACCCAGTCCCCC-CTACGTGCTGTCGATC
66 TCGACCGGAGAGGCAGAATGCACAAGCCAGGGATCGGCCCGGTCCCCCTCTACATGCTGTCGATC
* * ** * *
16435324 CTACTGTCGTAACCCTCAGTCCGGTCT-GA
131 CTGCTGCCACAACCCTCGGTCCGG-CTGGG
* ** * * * *
16435353 TCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * ** *
16435417 GTCGACCGGAGAGGCATAATGCACAAGTCAAGGATCGGCTCGGTCCCCCTCTACATGCTACCGTT
65 GTCGACCGGAGAGGCAGAATGCACAAGCCAGGGATCGGCCCGGTCCCCCTCTACATGCTGTCGAT
*
16435482 CCTGCTGCCACAACCCTCGGTCCGGTTGGG
130 CCTGCTGCCACAACCCTCGGTCCGGCTGGG
* * * * *
16435512 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACTCATGAAACGGGTGTGAGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
** ** ** *
16435577 TCGGTCGGAGAGGCAGAATGTGCAAGCCAGGGATCGGCCCGGTCCCCCTCTGTATGATGTCGATC
66 TCGACCGGAGAGGCAGAATGCACAAGCCAGGGATCGGCCCGGTCCCCCTCTACATGCTGTCGATC
* *
16435642 CCGCTACCACAACCCTCGGTCCGGCTGGG
131 CTGCTGCCACAACCCTCGGTCCGGCTGGG
16435671 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACG
16435719 GGTGTGCCAG
Statistics
Matches: 303, Mismatches: 59, Indels: 7
0.82 0.16 0.02
Matches are distributed among these distances:
157 1 0.00
158 94 0.31
159 207 0.68
160 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
TCGACCGGAGAGGCAGAATGCACAAGCCAGGGATCGGCCCGGTCCCCCTCTACATGCTGTCGATC
CTGCTGCCACAACCCTCGGTCCGGCTGGG
Found at i:16435874 original size:26 final size:26
Alignment explanation
Indices: 16435838--16435890 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16435828 CGTGTCTGAT
*
16435838 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16435864 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16435890 C
1 C
16435891 CTAAGTCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16437119 original size:26 final size:26
Alignment explanation
Indices: 16437081--16437131 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16437071 GGTTCAAACT
*
16437081 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16437107 CTTAGAC-ATGGAATGAACTCCGTAT
1 CTTAGACTA-GGAATGAACTCCGTAT
16437132 ACCTAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16437465 original size:26 final size:26
Alignment explanation
Indices: 16437424--16437476 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16437414 CCAGTCCGAT
16437424 CTTAGACTGAGAATGAACGCCGTATG
1 CTTAGACTGAGAATGAACGCCGTATG
* * **
16437450 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGAGAATGAACGCCGTATG
16437476 C
1 C
16437477 CTAAGTAAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACGCCGTATG
Found at i:16438233 original size:342 final size:339
Alignment explanation
Indices: 16437804--16438915 Score: 1053
Period size: 342 Copynumber: 3.2 Consensus size: 339
16437794 CCGGTCTGAT
* ** * * * *
16437804 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGTGTTTGGGCACTGAGC
1 CTTAGACTGGG-ATGAACTCCGTATGCCTAAGTCAACCCCTGAAATGAGCATATGGGCGCTCAAC
* *
16437869 CGATCGGAGAGGCATAATGCGCAAGCCAGGGATTAGCCCGATCCCCCTCTGCGTGCTGTCGATCC
65 CG-TCGGAGAGGCAGAATGCGCAAGCCAGGGATTAGCCCGATCCCCCTCTGCGTGCTG-CGGTCC
* * *
16437934 CACTGCCACAACCCTCGGTCCAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCTTAAGTCAA
128 CACTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGTCAA
* * * *
16437999 CCCATGAAATAGGCATACGGGCGCTCAGTCAGTC-GGAGAGGCAAAATGCGCAAGTCGGGGACCA
193 CCCATGAAACAGGCATACGAGCGCTCAG-CAGACTGGAGAGGCAAAATGCGCAAGCCGGGGACCA
* * * * * *
16438063 ACCCAATCACCCTTGCCTGCGGCTGATCCTGCTACCGTAACCTTCGATCCG-TGCAATCTTAGAC
257 ACCCAATCACCCCTGCCTGCGACCGATCCTGCTACCGCAACCCTCGATCCGATCCAATCTTAGAC
* *
16438127 TGGGAATGAATTCTATACG
322 T-GGAATGAAGTCCATACG
** *
16438146 CTTAGACTAGGGATGAACTCCAAATGCCTAAGTCAACCCCTGAAATGAGCATACGGGCGCTCAAC
1 CTTAGACT-GGGATGAACTCCGTATGCCTAAGTCAACCCCTGAAATGAGCATATGGGCGCTCAAC
* * * * * *
16438211 CAGTCGGAGAGGTAGAATGCGCAAGTCAGGGA-TCGACTCGGTCCCCTTCTGCGTGCTGCTGGTC
65 C-GTCGGAGAGGCAGAATGCGCAAGCCAGGGATTAG-CCCGATCCCCCTCTGCGTGCTGC-GGTC
* *
16438275 TCACTGCCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGTCA
127 CCACTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGTCA
* * * * *
16438340 ACCCATGAAACGGGCGTACGAGCGCTTAGCCGACTGGAGAGGCAAAATGCGTAAGCCGGGGACCA
192 ACCCATGAAACAGGCATACGAGCGCTCAGCAGACTGGAGAGGCAAAATGCGCAAGCCGGGGACCA
* ** * * ** * *
16438405 GCCCGGTCCCCCCTGCGTGCGACCGATCCTGCTGTCGCAACCCTCGGTCCGATCCGATCTTAGAC
257 ACCCAATCACCCCTGCCTGCGACCGATCCTGCTACCGCAACCCTCGATCCGATCCAATCTTAGAC
* *
16438470 TGGAATGAAGTCCGTATG
322 TGGAATGAAGTCCATACG
* * * *
16438488 CTTAGATTGGGGATTAACTCCGTATGCCTAAGTCAACCCAC-GAAACGAGCATGTGGGCGCTCAA
1 CTTAGACT-GGGATGAACTCCGTATGCCTAAGTCAACCC-CTGAAATGAGCATATGGGCGCTCAA
* * * * *
16438552 CCGGCTGGAGAGGCAGAATGCGCAAGCCAAGG-TTCAGCCCGATCCCTCTTTACGTGCTGCCGGT
64 CCGTC-GGAGAGGCAGAATGCGCAAGCCAGGGATT-AGCCCGATCCCCCTCTGCGTGCTG-CGGT
* * *
16438616 CCCACTGCCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATCCCTAAGCC
126 CCCACTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGTC
* * * ** * * * * *
16438681 AACCCATGAAAC-GAGCATGCAAGCACTCAGTTG-GTCGGAGAGGTAGAATGCGTAAGCTGGGGA
191 AACCCATGAAACAG-GCATACGAGCGCTCAGCAGACT-GGAGAGGCAAAATGCGCAAGCCGGGGA
* * * *** * ** * * * **
16438744 -TACGCCCGATC-CCCCTTTTGTGCTG-CCGATCCTGTTGTCGCAACCCTCGGTCTGGTCTGATC
254 CCA-ACCCAATCACCCC-TGCCTGC-GACCGATCCTGCTACCGCAACCCTCGATCCGATCCAATC
* * * *
16438806 TTAGACTGGGAATGAACTTCGTATG
316 TTAGACT-GGAATGAAGTCCATACG
* * *
16438831 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTAAACCCAC-GAAATGA--ATGTGCGGGTGCTC
1 CTTAGACT-GGGATGAACTCCGTATGCCTAAGTCAACCC-CTGAAATGAGCATAT--GGGCGCTC
*
16438893 AACCGTCCGGAGAGGTAGAATGC
62 AACCGT-CGGAGAGGCAGAATGC
16438916 TAAGTGGGGG
Statistics
Matches: 647, Mismatches: 103, Indels: 39
0.82 0.13 0.05
Matches are distributed among these distances:
341 19 0.03
342 522 0.81
343 105 0.16
344 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (339 bp):
CTTAGACTGGGATGAACTCCGTATGCCTAAGTCAACCCCTGAAATGAGCATATGGGCGCTCAACC
GTCGGAGAGGCAGAATGCGCAAGCCAGGGATTAGCCCGATCCCCCTCTGCGTGCTGCGGTCCCAC
TGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGTCAACCC
ATGAAACAGGCATACGAGCGCTCAGCAGACTGGAGAGGCAAAATGCGCAAGCCGGGGACCAACCC
AATCACCCCTGCCTGCGACCGATCCTGCTACCGCAACCCTCGATCCGATCCAATCTTAGACTGGA
ATGAAGTCCATACG
Found at i:16438841 original size:26 final size:26
Alignment explanation
Indices: 16438805--16438857 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16438795 CTGGTCTGAT
*
16438805 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16438831 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16438857 C
1 C
16438858 CTAAGTAAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16439846 original size:26 final size:26
Alignment explanation
Indices: 16439805--16439857 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16439795 CCAGTCCGAT
16439805 CTTAGACTGAGAATGAACGCCGTATG
1 CTTAGACTGAGAATGAACGCCGTATG
* * **
16439831 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGAGAATGAACGCCGTATG
16439857 C
1 C
16439858 CTAAGTAAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACGCCGTATG
Found at i:16440874 original size:26 final size:26
Alignment explanation
Indices: 16440844--16440896 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16440834 CCGATCCGAT
*
16440844 CTTAGACTGGGAATGAAGTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
16440870 CTTAGATTGGGGATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16440896 C
1 C
16440897 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16441008 original size:343 final size:342
Alignment explanation
Indices: 16440185--16441298 Score: 1224
Period size: 343 Copynumber: 3.3 Consensus size: 342
16440175 CCGGTCTGAT
* * * ** * * * *
16440185 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGTGTTTGGGCACTGAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGTGGGCGCTCAAC
* * * * *
16440250 C-GATCGGAGAGGCATAATGCGCAAGCCAGGGATT-AGCCCGATCCCCCTCTGCGTGCTGTCGAT
66 CGGCTCGGAGAGGCAGAATGCGCAAGCCAGGG-TTCAGCCCGAT-CCCCTTTGCGTGCTGCCGGT
* * * *
16440313 CCCACTGCCACAACCTTCGGTCCAGCTAGGGCTTAGACATGGAATGAACTCCCTATGCTTAAGTC
129 CCCACTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGTC
** * * *
16440378 AACCCATGAAATAGGCGTACGGGCGCTCAGTC-AGTCGGAGAGGCAAAATGCGCAAGTCGGGGAC
194 AACCCATGAAACGGGCGTACGAGCGCTCAGTCGAGTCGGAGAGGCAAAATGCGTAAGCCGGGGAC
* * * * ** ** * * * * *
16440442 CAACCCAATCACCCTTGCCTGCGGTTGATCCTGCTACCGTAACCTTCGATCCGTGCAATCTTAGA
259 CAGCCCGATCCCCCTTGCGTGC-GCCGATCCTGCTGTCGCAACCCTCGGTCCGTCCGATCTTAGA
** *
16440507 CTGGGAATGAAGTCTATACG
323 CTGGGAATGAAGTCCGTATG
* ** **
16440527 CTTAGACTAGGGATGAACTCCAAATGCCTAAGTCAACCC-CTGAAACGAGCATACGGGCGCTCAA
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCAC-GAAACGAGCATGTGGGCGCTCAA
* * * * * * *
16440591 CCAG-TCGGAGAGGTAGAATGCGCAAGTCAGGGATC-GACTCGGTCCCCTTCTGCGTGCTGCTGG
65 CCGGCTCGGAGAGGCAGAATGCGCAAGCCAGGGTTCAG-CCCGATCCCCTT-TGCGTGCTGCCGG
* *
16440654 TCTCACTGCCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGT
128 TCCCACTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGT
* * *
16440719 CAACCCATGAAACGGGCGTACGAGCGCTTAGCCGACT-GGAGAGGCAAAATGCGTAAGCCGGGGA
193 CAACCCATGAAACGGGCGTACGAGCGCTCAGTCGAGTCGGAGAGGCAAAATGCGTAAGCCGGGGA
* *
16440783 CCAGCCCGGTCCCCCCTGCGTGCGACCGATCCTGCTGTCGCAACCCTCGGTCCGATCCGATCTTA
258 CCAGCCCGATCCCCCTTGCGTGCG-CCGATCCTGCTGTCGCAACCCTCGGTCCG-TCCGATCTTA
16440848 GACTGGGAATGAAGTCCGTATG
321 GACTGGGAATGAAGTCCGTATG
* * *
16440870 CTTAGATTGGGGATTAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGTGGGCGCTCAAT
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGTGGGCGCTCAAC
* *
16440935 CGGCT-GGAGAGGCAGAATGCGCAAGCCAAGGTTCAGCCCGATCCCTCTTTACGTGCTGCCGGTC
66 CGGCTCGGAGAGGCAGAATGCGCAAGCCAGGGTTCAGCCCGATCCC-CTTTGCGTGCTGCCGGTC
* * *
16440999 CCACTGCCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATCCCTAAGCCA
130 CCACTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGTCA
* * * * * * * * * *
16441064 ACCCATGAAACGAGCATGCAAGCACTCAGTTG-GTCGGAGAGGTAGAATGCGTAAGCTGGGGA-T
195 ACCCATGAAACGGGCGTACGAGCGCTCAGTCGAGTCGGAGAGGCAAAATGCGTAAGCCGGGGACC
** * * *
16441127 ACGCCCGATCCCCCTTTTGTGCTGCCGATCCTGTTGTCGCAACCCTCGGTCTGGTCTGATCTTAG
260 A-GCCCGATCCCCCTTGCGTGC-GCCGATCCTGCTGTCGCAACCCTCGGTC-CGTCCGATCTTAG
* *
16441192 ACTGGGAATGAACTTCGTATG
322 ACTGGGAATGAAGTCCGTATG
* * *** *
16441213 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTAAACCCACGAAATGAATGTGTGGGTGCTCAAC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGTGGGCGCTCAAC
* *
16441278 CGTC-CGGAGAGGTAGAATGCG
66 CGGCTCGGAGAGGCAGAATGCG
16441299 TAAGTGGGGG
Statistics
Matches: 645, Mismatches: 110, Indels: 33
0.82 0.14 0.04
Matches are distributed among these distances:
341 8 0.01
342 244 0.38
343 385 0.60
344 8 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (342 bp):
CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGTGGGCGCTCAAC
CGGCTCGGAGAGGCAGAATGCGCAAGCCAGGGTTCAGCCCGATCCCCTTTGCGTGCTGCCGGTCC
CACTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGTCAA
CCCATGAAACGGGCGTACGAGCGCTCAGTCGAGTCGGAGAGGCAAAATGCGTAAGCCGGGGACCA
GCCCGATCCCCCTTGCGTGCGCCGATCCTGCTGTCGCAACCCTCGGTCCGTCCGATCTTAGACTG
GGAATGAAGTCCGTATG
Found at i:16441223 original size:26 final size:26
Alignment explanation
Indices: 16441187--16441239 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16441177 CTGGTCTGAT
*
16441187 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16441213 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16441239 C
1 C
16441240 CTAAGTAAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16441518 original size:196 final size:196
Alignment explanation
Indices: 16441165--16441519 Score: 426
Period size: 196 Copynumber: 1.8 Consensus size: 196
16441155 TCCTGTTGTC
* * * * * * *
16441165 GCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGGATGAA
1 GCAACCCTCAGTCTGATCCGATCTTAGACTGAGAATGAACTCCATATGCTTAGACTGGGAATGAA
* * * ** * *
16441230 CTCCGTATGCCTAAGTAAACCCACGAAATGAATGTGTGGGTGCTCAACCGTCCGGAGAGGTAGAA
66 CTCCGTATGCCTAAGCAAACCCACAAAATGAATGTGCGGGCACTCAACCGTCCGAAGAGGCAGAA
** ** *
16441295 TGCGTAAGTGGGGGATCGACCCGGTCCCCCCTGCTTGTTGTCGATCCTGTTGCTGGTCATGCTGA
131 TGCACAAGCCGGGGACCGACCCGGTCCCCCCTGCTTGTTGTCGATCCTGTTGCTGGTCATGCTGA
16441360 T
196 T
* *
16441361 GCAACCTTCAGTCTGATCCGATCTTAGATTGAGAATGAACTCCATATGCTTAGACAT-GGAATGA
1 GCAACCCTCAGTCTGATCCGATCTTAGACTGAGAATGAACTCCATATGCTTAGAC-TGGGAATGA
* * * * * * *
16441425 ACTCCGTATGCCTAAGCCAACCCATAAAATGAGTGTGCGGGCATTCAGTCGGT-CGAAGATGCAG
65 ACTCCGTATGCCTAAGCAAACCCACAAAATGAATGTGCGGGCACTCA-ACCGTCCGAAGAGGCAG
16441489 AATGCACAAGCCGGGGACCGACCCGGTCCCC
129 AATGCACAAGCCGGGGACCGACCCGGTCCCC
16441520 TCAACGTGCT
Statistics
Matches: 129, Mismatches: 28, Indels: 4
0.80 0.17 0.02
Matches are distributed among these distances:
196 125 0.97
197 4 0.03
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.24
Consensus pattern (196 bp):
GCAACCCTCAGTCTGATCCGATCTTAGACTGAGAATGAACTCCATATGCTTAGACTGGGAATGAA
CTCCGTATGCCTAAGCAAACCCACAAAATGAATGTGCGGGCACTCAACCGTCCGAAGAGGCAGAA
TGCACAAGCCGGGGACCGACCCGGTCCCCCCTGCTTGTTGTCGATCCTGTTGCTGGTCATGCTGA
T
Found at i:16442498 original size:26 final size:26
Alignment explanation
Indices: 16442460--16442512 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16442450 GGCTCAAACT
*
16442460 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16442486 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
16442512 C
1 C
16442513 CTAAGCAAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16442782 original size:159 final size:159
Alignment explanation
Indices: 16442485--16442926 Score: 562
Period size: 159 Copynumber: 2.8 Consensus size: 159
16442475 AACTCTGTAT
* * * ** **
16442485 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCAAACCCATGAAACGAAACGTGCAAGCGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG-GGCGTGCGGGCGCTCA
*** * * * * * *
16442550 GGTGGCCTGAGAGGTAGAATGCGCAAGTCGGGGATCGACCTGGTCCCCCTCTATGTGCTGCTAGT
65 ACCGACCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCTCTATGTGCTGCCAAT
*
16442615 CCCACTGCCACAACCCTCGGTCCGACTGGG
130 CCCACTGCCACAACCCTCGATCCGACTGGG
*
16442645 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAC
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAA
* * * * *
16442710 CCGACCGGAGAGGCAAAATGCGCAAGCCAGGGATCGACCCGATCCCCCTCTGTGTGCTGCCAATC
66 CCGACCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCTCTATGTGCTGCCAATC
* * * *
16442775 CCGCTGCCACAACCCTTGATCTGGCTGGG
131 CCACTGCCACAACCCTCGATCCGACTGGG
* * * *
16442804 GTTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCACGAAACGGGCATGCGGGCCCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAA
* * *
16442869 CCGATCGAAGAGGCAGAATGCACAAGTCGGGGATCGACCCGGT-CCCCTCTATGTGCTG
66 CCGACCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCTCTATGTGCTG
16442927 TCGATCCTGC
Statistics
Matches: 243, Mismatches: 39, Indels: 2
0.86 0.14 0.01
Matches are distributed among these distances:
158 14 0.06
159 184 0.76
160 45 0.19
ACGTcount: A:0.24, C:0.32, G:0.27, T:0.17
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAA
CCGACCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCTCTATGTGCTGCCAATC
CCACTGCCACAACCCTCGATCCGACTGGG
Done.