Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19866354
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 74000 characters in sequence are not A, C, G, or T
File 77 of 100
Found at i:16443004 original size:26 final size:26
Alignment explanation
Indices: 16442963--16443015 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16442953 CCAATCCAAT
*
16442963 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCGGTATG
* *
16442989 CTTAGACTGGGGATGAACTCGGTATG
1 CTTAGACTAGGAATGAACTCGGTATG
16443015 C
1 C
16443016 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCGGTATG
Found at i:16443230 original size:139 final size:141
Alignment explanation
Indices: 16442958--16443239 Score: 311
Period size: 139 Copynumber: 2.0 Consensus size: 141
16442948 TCAGACCAAT
* ** * *
16442958 CCAATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCGGTATGCCTAAGCC
1 CCAATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGAAATGAACTCCGTATGCCCAAGCC
* * * * * * * *
16443023 AACCCATGAAACGAGCGTGTGACCGTTCAGTCGATCGGAGAGGCAGAATACACAAGCTGGGGACC
66 AACCCACGAAACGAGCGTGCGACCGCTCAGCCAATCGGAAAGGCAGAATACACAAGCTAGAGACC
*
16443088 GAT-CTGTCCC
131 GATCCGGTCCC
* *
16443098 CCAA-CTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-TAAATGAACTCCGTATGCCCAAGC
1 CCAATCTTAGACTAGGAATGAACTCCGTATGCTTAGAC-TGGAAATGAACTCCGTATGCCCAAGC
* * * * **
16443161 CAACCCGCGAAATGAGCGTGCGAGCGCTCAGCCAATCGGAAAGGCAGAATGCGTAAG-TCAGAGA
65 CAACCCACGAAACGAGCGTGCGACCGCTCAGCCAATCGGAAAGGCAGAATACACAAGCT-AGAGA
*
16443225 TCGATCCGGTCCC
129 CCGATCCGGTCCC
16443238 CC
1 CC
16443240 CTACGTGCTG
Statistics
Matches: 116, Mismatches: 23, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
138 1 0.01
139 102 0.88
140 13 0.11
ACGTcount: A:0.29, C:0.26, G:0.26, T:0.19
Consensus pattern (141 bp):
CCAATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGAAATGAACTCCGTATGCCCAAGCC
AACCCACGAAACGAGCGTGCGACCGCTCAGCCAATCGGAAAGGCAGAATACACAAGCTAGAGACC
GATCCGGTCCC
Found at i:16443643 original size:26 final size:26
Alignment explanation
Indices: 16443602--16443654 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16443592 CCGGTTTGAT
*
16443602 CTTAGACTGGGAATGAAATCTGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
*
16443628 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAAATCCGTATG
16443654 C
1 C
16443655 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:16444717 original size:26 final size:26
Alignment explanation
Indices: 16444666--16444718 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16444656 TTGGTTCAAT
*
16444666 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
16444692 CTTAGACTGGGGATGAAGTGCATATG
1 CTTAGACTGGGAATGAACTCCATATG
16444718 C
1 C
16444719 CTATGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16445413 original size:26 final size:26
Alignment explanation
Indices: 16445375--16445427 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16445365 GGCTCAAACT
** * *
16445375 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACAAGGAATAAACTCCGTATG
16445401 CTTAGACAAGGAATAAACTCCGTATG
1 CTTAGACAAGGAATAAACTCCGTATG
16445427 C
1 C
16445428 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACAAGGAATAAACTCCGTATG
Found at i:16445769 original size:26 final size:26
Alignment explanation
Indices: 16445718--16445770 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16445708 CCAATCCGAT
* * *
16445718 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAACGAACTCTATATG
*
16445744 CTTAGACTGGGGACGAACTCTATATG
1 CTTAGACTGGGAACGAACTCTATATG
16445770 C
1 C
16445771 CTAAGTCAAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCTATATG
Found at i:16446454 original size:158 final size:157
Alignment explanation
Indices: 16445962--16446454 Score: 497
Period size: 158 Copynumber: 3.1 Consensus size: 157
16445952 GCTTATACAT
** * * *
16445962 GGAATGAACTCTGTTTGCCTAAGCGAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGTCGGAG
1 GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAG
* * * *
16446027 AGGTAGAATGCGCAAGCCGAGGATCGACCCGATCCCCACCTGCGTGCTGCTATCCTGCTATCGCA
66 AGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCC-CCTGCGTGCTGCGATCCTGCTACCGCA
* * * ** * * *
16446092 ACCCTCGGTCTGGTCCAATCGTAAACCG
130 ACCTTCAGTCTAGTCTGATCTTAGACTG
** * * * * ** *
16446120 GGAATGAACTTGATATGCCTAAGTCAACCCATGAAACGAGAGTTCGATCGCTGAGCCGGTCGGAG
1 GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAG
* * * * * * *
16446185 AGGCATAATTCGCAAGTCGGGGATCGACCCGGTCACCCTCTGCGTGCTGCCGGTCCTGCTACCAC
66 AGGCAGAATGCGCAAGCCGGGGATCGACCCGATC-CCCCCTGCGTGCTG-CGATCCTGCTACCGC
**
16446250 AACCCTT-AGTCTAG-CTAGGGCTTAGACAT-
129 AA-CCTTCAGTCTAGTCT-GATCTTAGAC-TG
* * * * * *
16446279 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCACTCAACCGGTCAGAG
1 GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAG
* *
16446344 AGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCCGCA
66 AGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTG-CGATCCTGCTACCGCA
* *
16446409 ACCTTCAATCCAGTCTGATCTTAGACTG
130 ACCTTCAGTCTAGTCTGATCTTAGACTG
16446437 GGAATGAACTCCATATGC
1 GGAATGAACTCCATATGC
16446455 TTAGACTGGG
Statistics
Matches: 263, Mismatches: 64, Indels: 16
0.77 0.19 0.05
Matches are distributed among these distances:
157 5 0.02
158 148 0.56
159 107 0.41
160 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGTCGGAG
AGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGCGATCCTGCTACCGCAA
CCTTCAGTCTAGTCTGATCTTAGACTG
Found at i:16446952 original size:158 final size:158
Alignment explanation
Indices: 16446652--16447152 Score: 483
Period size: 158 Copynumber: 3.2 Consensus size: 158
16446642 ACTCCGTATG
* * * * *
16446652 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCTTGAAACGAGAGTGCGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGC
* * * * * * * * *
16446717 CGACCGGAGAGGCAGAATGCATAAGCCGGGGACTGGCCCGATCCCCC-CTGCATACTGTTGATCT
66 CGATCGGAGAGGCAGAATGCGTAAGCCGAGGTC-GGCCCGGTCCCCCTCTGCGTGCTGTCGATCC
* *
16446781 TACTGTTGTAACCCTCGGTCTGGTTTGAT
130 TACTGTCGCAACCCTCGGTCTGGTTTGAT
* * ** *
16446810 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGCATTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
* * * *
16446874 CCGATCGGAGAGGCATAACGCGTAAGCCGAGGTCGGCCCGGTCCCCCTCTACGTGCTGTCGGTCC
65 CCGATCGGAGAGGCAGAATGCGTAAGCCGAGGTCGGCCCGGTCCCCCTCTGCGTGCTGTCGATCC
* * * ** * * **
16446939 CACTGCCACAACCCTCGGTCCAGCTGGGG
130 TACTGTCGCAACCCTCGGTCTGGTTTGAT
* *
16446968 CTTAGACATGGAATGAACTCTC-TTTGCCTAAGCCAACCCATGAAACGGGCGTACGGGCGCTCAG
1 CTTAGACATGGAATGAACTC-CGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAG
* * * * * * *
16447032 CGGGTCGGAGAGGCAGAATGAGCAAGCC-AGGGATCAGTCCGGT-CCCCTCTGTGTGCTGTCGAT
65 CCGATCGGAGAGGCAGAATGCGTAAGCCGA-GG-TCGGCCCGGTCCCCCTCTGCGTGCTGTCGAT
* *
16447095 CCTGCTGTCGCAACCCTCGGTCTGGTCTGAT
128 CCTACTGTCGCAACCCTCGGTCTGGTTTGAT
* *
16447126 CTTAGA-TTAGGAATGAACTTCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
16447153 TGAGACTGGG
Statistics
Matches: 270, Mismatches: 65, Indels: 16
0.77 0.19 0.05
Matches are distributed among these distances:
157 16 0.06
158 244 0.90
159 10 0.04
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGC
CGATCGGAGAGGCAGAATGCGTAAGCCGAGGTCGGCCCGGTCCCCCTCTGCGTGCTGTCGATCCT
ACTGTCGCAACCCTCGGTCTGGTTTGAT
Found at i:16448220 original size:26 final size:26
Alignment explanation
Indices: 16448191--16448243 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16448181 CTGGTCTGAT
*
16448191 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
16448217 CTTAGATTGGGGATGAAGTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16448243 C
1 C
16448244 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.15, G:0.30, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16454827 original size:26 final size:26
Alignment explanation
Indices: 16454789--16454841 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16454779 GGCTCAAACT
16454789 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16454815 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
16454841 C
1 C
16454842 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16455008 original size:26 final size:26
Alignment explanation
Indices: 16454972--16455024 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16454962 CTGGTTCGAT
16454972 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
16454998 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16455024 C
1 C
16455025 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16455710 original size:26 final size:26
Alignment explanation
Indices: 16455669--16455721 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16455659 CTGGTCTGAT
*
16455669 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16455695 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
16455721 C
1 C
16455722 CTAGGTCATC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16455903 original size:26 final size:26
Alignment explanation
Indices: 16455865--16455917 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16455855 CTGGTCTGAT
16455865 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16455891 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
16455917 C
1 C
16455918 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16455990 original size:196 final size:198
Alignment explanation
Indices: 16455651--16456010 Score: 546
Period size: 196 Copynumber: 1.8 Consensus size: 198
16455641 GCTGCCACAA
* * *
16455651 CCTTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTAGGGATGAACTCC
1 CCTTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCC
* * * * * * *
16455716 GTATGCCTAGGTCATCCCACGAAACGAGCGTGCGGGTGCTCATCCGACCGAAGAGGTAGAATGCG
66 GTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAACCGACCGAAGAGGTAGAATACG
* * *
16455781 TAAGTCAGGGATCGACCCGGTCCCCC-CTGCGTGCTGCTGATCCTATTGCTGGTCCTCCTACCGC
131 CAAGCCAGGGATCGACCCGATCCCCCTCTGCGTGCTGCTGATCCTATTGCTGGTCCTCCTACCGC
16455845 AAT
196 AAT
16455848 CCTT-GGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGAC-ATGGAATGAACTC
1 CCTTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTA-GGAATGAACTC
* *
16455911 CGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAACCGACCGGAGAGGTAGAATAC
65 CGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAACCGACCGAAGAGGTAGAATAC
*
16455976 GCAAGCCAGGGATCGGCCCGATCCCCCTCTGCGTG
130 GCAAGCCAGGGATCGACCCGATCCCCCTCTGCGTG
16456011 TTACTGGTCC
Statistics
Matches: 145, Mismatches: 16, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
195 1 0.01
196 133 0.92
197 11 0.08
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (198 bp):
CCTTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCC
GTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAACCGACCGAAGAGGTAGAATACG
CAAGCCAGGGATCGACCCGATCCCCCTCTGCGTGCTGCTGATCCTATTGCTGGTCCTCCTACCGC
AAT
Found at i:16456442 original size:26 final size:26
Alignment explanation
Indices: 16456404--16456456 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16456394 TCGGTTCGAT
*
16456404 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16456430 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16456456 C
1 C
16456457 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16456538 original size:539 final size:539
Alignment explanation
Indices: 16455361--16456551 Score: 1366
Period size: 539 Copynumber: 2.2 Consensus size: 539
16455351 TCTTAAATTG
* * * * *
16455361 GGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGTTCGAGCGCTGAGCC-AGTAGGA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGA-TAGGA
* * * * * * *
16455425 GAGGCATAATGTGCAAGTCGGGGATCCGTTCAG-TCCCCCTCTGCGTGCTACCGGTCCTGCTACC
65 GAGGCAAAATGCGCAAGCCGAGGAT-CGATCCGATCCCCCTCTGCGTGCTACCGGTCCCGCTACC
*
16455489 ACAAACCTCGGTTCGACAGAGGCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCCACTA
129 ACAAACCTCGGTTCGACAGAGGCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCCACGA
** * * * * *
16455554 AATGGGCGTGCGGGTGCTCAATCGGTCGGAAAGGAAGAATGCGTAAGTCGAGGATTAACCCGATC
194 AACAGGCGTGCGGGTGCTCAATCAGCCGGAAAGGAAGAATACGCAAGTCGAGGATCAACCCGATC
* * *
16455619 CCCCCTGCGTGCTGTCGATCCTGCTGCCACAACCTTCGGTCTGGTCTGATCTTAGACTGGGAATG
259 CCACCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATG
* * * * *
16455684 AACTTCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAGGTCATCCCACGAAACGAGCGTGC
324 AACTCCATATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTGC
* * * ** * * *
16455749 GGGTGCTCATCCGACCGAAGAGGTAGAATGCGTAAGTCAGGGATCGACCCGGTCCCCCCTGCGTG
389 GGGTGCTCAGCCGACAGAAGAGGCAGAATGCACAAGTCAGGGACCGACCCGATCCCCCCTGCGTA
** * * * *
16455814 CTGCTGATCCTATTGCTGGTCCTCCTACCGCAATCCTTGGTCTGGTCTGATCTTAGACTAGGAAT
454 CTGCCAATCCTACTACTGGTCCTCCTACCACAACCCTTGGTCTGGTCTGATCTTAGACTAGGAAT
16455879 GAACTCCGTATGCTTAGACAT
519 GAACTCCGTATGCTTAGACAT
** * **
16455900 GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAACCGACCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGATAGGAG
* * * ** * * *
16455965 AGGTAGAATACGCAAGCC-AGGGATCGGCCCGATCCCCCTCTGCGTGTTACTGGTCCCGCTATCA
66 AGGCAAAATGCGCAAGCCGA-GGATCGATCCGATCCCCCTCTGCGTGCTACCGGTCCCGCTACCA
* *** * * *
16456029 CAACCCTCGG-TCTGGTTGGGGCTTAGACATTGAATGAACTCCCTATGCCTAAGCCAACCCACGA
130 CAAACCTCGGTTC-GACAGAGGCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCCACGA
* * * * * *
16456093 AACAGGCGTGCGGGTGCTTAGA-CAGCCGGAGAGGCAGAATATGCAAG-CTGGGGATCAGCCCGA
194 AACAGGCGTGCGGGTGCTCA-ATCAGCCGGAAAGGAAGAATACGCAAGTC-GAGGATCAACCCGA
* * * **
16456156 TCCCACCTGCGTGCTGTTGATCTTGCTGTCGTAACCCTCGGTCTGGTCTGATCTTAGACTAGGAA
257 TCCCACCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTAGGAA
*
16456221 TGAACTCCATATGCTTAGAC-AGGGGATGAACTCCGTATGCCTAAGTCAACCAATGAAACGAGCG
322 TGAACTCCATATGCTTAGACTA-GGGATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCG
* * **
16456285 TGCGGAG-GCTTAGCCGACTAGAA-AGGCAGAATGCACAAGTCGGGGACCGGTCCGATCCCCCCT
386 TGCGG-GTGCTCAGCCGAC-AGAAGAGGCAGAATGCACAAGTCAGGGACCGACCCGATCCCCCCT
* * * *
16456348 GCGTACTGCCAATCCTGCTACTGGTCCTGCTACCACGACCCTCAT-TTC-GGT-TCGATCTTAGA
449 GCGTACTGCCAATCCTACTACTGGTCCTCCTACCACAACCCT--TGGTCTGGTCT-GATCTTAGA
* *
16456410 CTGGGAATGAACTCTGTATGCTTAGACAT
511 CTAGGAATGAACTCCGTATGCTTAGACAT
* *
16456439 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGATTGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGATAGGAG
* * *
16456504 AGACAAAATGCGTAAGCCGAGG-TCTAATCCGATCCCCC-CTGCGTGCTA
66 AGGCAAAATGCGCAAGCCGAGGATC-GATCCGATCCCCCTCTGCGTGCTA
16456552 TCGATCCTAC
Statistics
Matches: 541, Mismatches: 97, Indels: 29
0.81 0.15 0.04
Matches are distributed among these distances:
538 20 0.04
539 511 0.94
540 9 0.02
541 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (539 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCGATAGGAG
AGGCAAAATGCGCAAGCCGAGGATCGATCCGATCCCCCTCTGCGTGCTACCGGTCCCGCTACCAC
AAACCTCGGTTCGACAGAGGCTTAGACATGGAATGAACTCCCTATGACTAAGCCAACCCACGAAA
CAGGCGTGCGGGTGCTCAATCAGCCGGAAAGGAAGAATACGCAAGTCGAGGATCAACCCGATCCC
ACCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAA
CTCCATATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGG
GTGCTCAGCCGACAGAAGAGGCAGAATGCACAAGTCAGGGACCGACCCGATCCCCCCTGCGTACT
GCCAATCCTACTACTGGTCCTCCTACCACAACCCTTGGTCTGGTCTGATCTTAGACTAGGAATGA
ACTCCGTATGCTTAGACAT
Found at i:16456767 original size:539 final size:538
Alignment explanation
Indices: 16455458--16456733 Score: 1308
Period size: 539 Copynumber: 2.4 Consensus size: 538
16455448 ATCCGTTCAG
* * ** * * *** *
16455458 TCCCCCTCTGCGTGCTACCGGTCCTGCTACCACAAACCTCGGTTC-GACAGAGGCTTAGACATGG
1 TCCCCCTCTGCGTGCTACTGATCCCACTACCACAACCCTCGGTCCGGTTGGA-GCTTAAACATGG
* * * * ** * * * *
16455522 AATGAACTCCCTATGACTAAGCCAACCCACTAAATGGGCGTGCGGGTGCTCA-ATCGGTCGGAAA
65 AAAGAACTCCATATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGTGCTGAGA-CAGCCGGAGA
* * ** * * *
16455586 GGAAGAATGCGTAAGTC-GAGGATTAACCCGATCCCCCCTGCGTGCTGTCGATCCTGCTGCCACA
129 GGCAGAATACACAAG-CAGGGGATCAGCCCGAT-CCCCCTGCGTGCTGTCGATCCTGCTGCCACA
* * * *
16455650 ACCTTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTAGGGATGAACTC
192 ACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTAGGGATGAACTC
* * * * * *
16455715 CGTATGCCTAGGTCATCCCACGAAACGAGCGTGCGGGTGCTCATCCGACCGAAGAGGTAGAATGC
257 CGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGTGCTCAGCCGACAGAAGAGGCAGAATGC
** * * * ** * * *
16455780 GTAAGTCAGGGATCGACCCGGTCCCCCCTGCGTGCTGCTGATCCTATTGCTGGTCCTCCTACCGC
322 ACAAGTCAGGGACCGACCCGATCCCCCCTGCGTACTGCCAATCCTACTACTGGTCCTCCTACCAC
*
16455845 AATCCTTGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATGAACT
387 AACCCTTGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATGAACT
* ** *
16455910 CCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAACCGACCGGAGAGGTAGAATA
452 CCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAACCGACCGGAGAGACAAAATA
**
16455975 CGCAAGCCAGGGATCGGCCCGA
517 CGCAAGCCAGGGATCAACCCGA
* * * * * * * *
16455997 TCCCCCTCTGCGTGTTACTGGTCCCGCTATCACAACCCTCGGTCTGGTTGGGGCTTAGACATTGA
1 TCCCCCTCTGCGTGCTACTGATCCCACTACCACAACCCTCGGTCCGGTTGGAGCTTAAACATGGA
* * *
16456062 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGTGCTTAGACAGCCGGAGAGG
66 AAGAACTCCATATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGTGCTGAGACAGCCGGAGAGG
** * * * * **
16456127 CAGAATATGCAAGCTGGGGATCAGCCCGATCCCACCTGCGTGCTGTTGATCTTGCTGTCGTAACC
131 CAGAATACACAAGCAGGGGATCAGCCCGATCCC-CCTGCGTGCTGTCGATCCTGCTGCCACAACC
16456192 CTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCATATGCTTAGAC-AGGGGATGAACTCCG
195 CTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTA-GGGATGAACTCCG
* *
16456256 TATGCCTAAGTCAACCAATGAAACGAGCGTGCGGAG-GCTTAGCCGACTAGAA-AGGCAGAATGC
259 TATGCCTAAGTCAACCAACGAAACGAGCGTGCGG-GTGCTCAGCCGAC-AGAAGAGGCAGAATGC
* ** * *
16456319 ACAAGTCGGGGACCGGTCCGATCCCCCCTGCGTACTGCCAATCCTGCTACTGGTCCTGCTACCAC
322 ACAAGTCAGGGACCGACCCGATCCCCCCTGCGTACTGCCAATCCTACTACTGGTCCTCCTACCAC
* * * *
16456384 GACCCTCAT-TTC-GGT-TCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACATGGAATGA
387 AACCCT--TGGTCTGGTCT-GATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATGA
** * **
16456446 ACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGATTGGAGAGACAAA
449 ACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAACCGACCGGAGAGACAAA
* * *
16456511 ATGCGTAAGCC-GAGG-TCTAATCCGA
514 ATACGCAAGCCAG-GGATC-AACCCGA
* * *
16456536 TCCCCC-CTGCGTGCTA-TCGATCCTACTACCGCAACCCTCGGTCCGGTCT-GATCTTAAAC-TG
1 TCCCCCTCTGCGTGCTACT-GATCCCACTACCACAACCCTCGGTCCGGT-TGGAGCTTAAACAT-
* * * * *
16456597 GGAAAGAACTCTATATGCCTAAGTCAACCCATGAAA-TGAGCG-GTCGGGTGCTGAGCCAGCCGG
63 GGAAAGAACTCCATATGCCTAAGCCAACCCACGAAACAG-GCGTG-CGGGTGCTGAGACAGCCGG
* * ** *
16456660 AGAGGCATAATGCACAAGCAGGGGATTGGCCCGATCCCCTTCTGCATGCTGTCGATCCTGCTGCC
126 AGAGGCAGAATACACAAGCAGGGGATCAGCCCGATCCCC--CTGCGTGCTGTCGATCCTGCTGCC
16456725 ACAACCCTC
189 ACAACCCTC
16456734 AGTCCGATTG
Statistics
Matches: 608, Mismatches: 110, Indels: 38
0.80 0.15 0.05
Matches are distributed among these distances:
537 5 0.01
538 129 0.21
539 464 0.76
540 9 0.01
541 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (538 bp):
TCCCCCTCTGCGTGCTACTGATCCCACTACCACAACCCTCGGTCCGGTTGGAGCTTAAACATGGA
AAGAACTCCATATGCCTAAGCCAACCCACGAAACAGGCGTGCGGGTGCTGAGACAGCCGGAGAGG
CAGAATACACAAGCAGGGGATCAGCCCGATCCCCCTGCGTGCTGTCGATCCTGCTGCCACAACCC
TCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTAGGGATGAACTCCGTA
TGCCTAAGTCAACCAACGAAACGAGCGTGCGGGTGCTCAGCCGACAGAAGAGGCAGAATGCACAA
GTCAGGGACCGACCCGATCCCCCCTGCGTACTGCCAATCCTACTACTGGTCCTCCTACCACAACC
CTTGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGT
ATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAACCGACCGGAGAGACAAAATACGCA
AGCCAGGGATCAACCCGA
Found at i:16456854 original size:159 final size:157
Alignment explanation
Indices: 16456429--16456859 Score: 404
Period size: 159 Copynumber: 2.7 Consensus size: 157
16456419 AACTCTGTAT
* *
16456429 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAACG-GGGTGCGGGCGCTCAG
* * * * *** * *
16456494 CCGATTGGAGAGACAAAATGCGTAAGCCGAGGTCTAATCCGATCCCC-CCTGCGTGCTATCGATC
65 CCGGTCGGAGAGACAAAATGCGCAAGCCGAGATCGGCT-CGATCCCCTTCTGCATGCTATCGATC
* * *
16456558 CTACTACCGCAACCCTCGGTCCGGTCTGA
129 CTACTACCACAACCCTCAGTCCGATCTGA
* * * * * *
16456587 TCTTAAAC-TGGGAAAGAACT-CTATATGCCTAAGTCAACCCATGAAATGAGCGGT-CGGGTGCT
1 GCTTAGACAT-GGAATGAACTCCT-TATGCCTAAGCCAACCCATGAAACG-G-GGTGCGGGCGCT
* * * * * * * * * * *
16456649 GAGCCAGCCGGAGAGGCATAATGCACAAGCAGGGGATTGGCCCGATCCCCTTCTGCATGCTGTCG
62 CAGCCGGTCGGAGAGACAAAATGCGCAAGC-CGAGATCGGCTCGATCCCCTTCTGCATGCTATCG
* * *
16456714 ATCCTGCTGCCACAACCCTCAGTCCGAT-TGGG
126 ATCCTACTACCACAACCCTCAGTCCGATCT-GA
*
16456746 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCAATGAAACGGGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAACGGG-GTGCGGGCGCTCAG
* *
16456811 CCGGTCGGAGAGCCAGAATGCGCAAGCCGAGTATCGGCTCGATCCCCTT
65 CCGGTCGGAGAGACAAAATGCGCAAGCCGAG-ATCGGCTCGATCCCCTT
16456860 ACTTGCTATT
Statistics
Matches: 211, Mismatches: 51, Indels: 21
0.75 0.18 0.07
Matches are distributed among these distances:
157 3 0.01
158 82 0.39
159 123 0.58
160 3 0.01
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAACGGGGTGCGGGCGCTCAGC
CGGTCGGAGAGACAAAATGCGCAAGCCGAGATCGGCTCGATCCCCTTCTGCATGCTATCGATCCT
ACTACCACAACCCTCAGTCCGATCTGA
Found at i:16456940 original size:26 final size:26
Alignment explanation
Indices: 16456904--16456955 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16456894 CCGGTCTAAT
*
16456904 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16456930 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16456956 GCTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16457139 original size:26 final size:26
Alignment explanation
Indices: 16457101--16457153 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16457091 CCGGTCTGAT
*
16457101 CTTAGACTGGGAATGAAGTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16457127 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
16457153 C
1 C
16457154 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16457759 original size:520 final size:507
Alignment explanation
Indices: 16456786--16457745 Score: 1190
Period size: 520 Copynumber: 1.9 Consensus size: 507
16456776 AAGCCAACCA
* * * *
16456786 ATGAAACGGGTGTGCGGGCGCTCAGCCGGTCGGAGAGCCAGAATGCGCAAGCCGAGTATCGGCTC
1 ATGAAACGGGCGTGCAGGCGCTCAGCCGGTCGGAGAGCCAGAATGCGCAAGCCGAGGATCGGCCC
* * * ** * *
16456851 GATCCCCTTACTTGCTATTGATCTTGCTGTCGTAACCCTCGGTCCGGTCTAATCTTAGACTGGGA
66 GATCCCCCTACGTGCTATCGATCTTGCTACCGTAACCCTCAGTCCGGTCTAATCTTAGACTGAGA
** *
16456916 ATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGGCTAAGTCAACCCACGAAACAAGCG
131 ATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCG
* * * * * ** * * *
16456981 TGCGGGCACTCAGTCGGTCGGAGAGGCAGAATGTGCAAGCTGGGGATCGACTCGGTCCCTCCCTG
196 TGCGGGCACCCAGTCAGTCGAAGAGGCAAAATGTGCAAACCAGGGATCGACCCGATCCCTCCCTA
** * **
16457046 TGTGCTGTCGATCCTACTGCTGGTCCTGTTATCGCAACCCTCGATCCGGTCTGATCTTAGACTGG
261 CATGCTGCCGATCCTACTGCTGGTCCTACTATCGCAACCCTCGATCCGGTCTGATCTTAGACTGG
* *
16457111 GAATGAAGTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAG
326 GAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG
** *
16457176 CGTACGGGCACTCAGTCGGTCGAAGAGGTAGAGTGCGTAAGCCGAGGATCAGCCCAGTCCCCCTC
391 CGTACGGGCACTCAGTCGACCGAAGAGGTAGAATGCGTAAGCCGAGGATCAGCCCAGTCCCCCTC
16457241 TGCATGCTGTTGGTCCAGCTATCACAACCCTCGATCCGACTGGGCCTTAGAC
456 TGCATGCTGTTGGTCCAGCTATCACAACCCTCGATCCGACTGGGCCTTAGAC
* * * *
16457293 ATGAAACGGGCGTGCAGGCGCTTAGCTGGTCGGAGAGGCAGAATGTGCAAGCC-ATGGATCGGCC
1 ATGAAACGGGCGTGCAGGCGCTCAGCCGGTCGGAGAGCCAGAATGCGCAAGCCGA-GGATCGGCC
* * *
16457357 CGATCCCCCCTGCGTGCTATCGAT-TCTGCTACCGTAACCCTCAGTCCGGTCTGATCTTAGATTG
65 CGAT-CCCCCTACGTGCTATCGATCT-TGCTACCGTAACCCTCAGTCCGGTCTAATCTTAGACTG
* * *
16457421 AGATTGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGA
128 AGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAA
*
16457486 GCGTGCGGGTGCTCAGCCGACCGGAGAGGTCAGTCGAAGAGGCAAAATGTGCAAACCATGGATCG
193 GCGTGC-GG-G--CA--C--CC----A-GTCAGTCGAAGAGGCAAAATGTGCAAACCAGGGATCG
* * ** * *
16457551 ACCCGATCCC-CCCTACATGTTGCCTATCCTGTTGCTGGTCCTACTATCGTAACCCTTGATCCGG
245 ACCCGATCCCTCCCTACATGCTGCCGATCCTACTGCTGGTCCTACTATCGCAACCCTCGATCCGG
* * **
16457615 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACGTGGAATGAACTTTGTATGCCTAAGC
310 TCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
* * ** * *
16457680 CAACCCACGAAATGAGCGTATGGGTGCTCAG-CAGACCGAAGAGGTAGAATTCGTAAGTCGAGGA
375 CAACCCACGAAACGAGCGTACGGGCACTCAGTC-GACCGAAGAGGTAGAATGCGTAAGCCGAGGA
16457744 TC
439 TC
16457746 GACTCGATCC
Statistics
Matches: 375, Mismatches: 61, Indels: 21
0.82 0.13 0.05
Matches are distributed among these distances:
506 1 0.00
507 59 0.16
508 112 0.30
509 2 0.01
510 1 0.00
512 2 0.01
514 1 0.00
516 1 0.00
519 1 0.00
520 157 0.42
521 38 0.10
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.23
Consensus pattern (507 bp):
ATGAAACGGGCGTGCAGGCGCTCAGCCGGTCGGAGAGCCAGAATGCGCAAGCCGAGGATCGGCCC
GATCCCCCTACGTGCTATCGATCTTGCTACCGTAACCCTCAGTCCGGTCTAATCTTAGACTGAGA
ATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCG
TGCGGGCACCCAGTCAGTCGAAGAGGCAAAATGTGCAAACCAGGGATCGACCCGATCCCTCCCTA
CATGCTGCCGATCCTACTGCTGGTCCTACTATCGCAACCCTCGATCCGGTCTGATCTTAGACTGG
GAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG
CGTACGGGCACTCAGTCGACCGAAGAGGTAGAATGCGTAAGCCGAGGATCAGCCCAGTCCCCCTC
TGCATGCTGTTGGTCCAGCTATCACAACCCTCGATCCGACTGGGCCTTAGAC
Found at i:16458888 original size:26 final size:26
Alignment explanation
Indices: 16458859--16458925 Score: 116
Period size: 26 Copynumber: 2.6 Consensus size: 26
16458849 TAGACTAGAA
16458859 ATGAACTCCATATGCTTAGACTGGGG
1 ATGAACTCCATATGCTTAGACTGGGG
* *
16458885 ATGAGCTCCGTATGCTTAGACTGGGG
1 ATGAACTCCATATGCTTAGACTGGGG
16458911 ATGAACTCCATATGC
1 ATGAACTCCATATGC
16458926 CTAAGTCAAC
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 37 1.00
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (26 bp):
ATGAACTCCATATGCTTAGACTGGGG
Found at i:16459107 original size:26 final size:26
Alignment explanation
Indices: 16459069--16459121 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16459059 CTGATTTGAT
16459069 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16459095 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16459121 C
1 C
16459122 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16459460 original size:26 final size:26
Alignment explanation
Indices: 16459424--16459476 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16459414 CTGATCCTAT
16459424 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
16459450 CTTAGACTGGGGATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCATATG
16459476 C
1 C
16459477 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16461411 original size:26 final size:26
Alignment explanation
Indices: 16461373--16461425 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16461363 GGCTTAAACT
16461373 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16461399 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16461425 C
1 C
16461426 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16462474 original size:26 final size:26
Alignment explanation
Indices: 16462445--16462508 Score: 110
Period size: 26 Copynumber: 2.5 Consensus size: 26
16462435 TCCTAGACTG
16462445 GGAATGAACTCCAGGGGCTTAGACAT
1 GGAATGAACTCCAGGGGCTTAGACAT
*
16462471 GGAATGAACTCCGGGGGCTTAGACAT
1 GGAATGAACTCCAGGGGCTTAGACAT
*
16462497 GGAACGAACTCC
1 GGAATGAACTCC
16462509 CTATGCCTAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 36 1.00
ACGTcount: A:0.30, C:0.22, G:0.31, T:0.17
Consensus pattern (26 bp):
GGAATGAACTCCAGGGGCTTAGACAT
Found at i:16463185 original size:158 final size:158
Alignment explanation
Indices: 16462790--16463178 Score: 392
Period size: 159 Copynumber: 2.5 Consensus size: 158
16462780 ATCGGCCAAG
* * * * ** *
16462790 TCCCCCCTGCATGCTACCGATCCTGCTGCCCCAACCCTCGGTCCTATCTGATCTTAGACTGGGAT
1 TCCCCCCTGCGTGCTACCGATCCTGCTTCCACAACCCTTGGTCCGGTCTGATCTTAGACTGGGAA
* * * * * * * *
16462855 TGAACTCCATAAGCCTAAGTCAATCCACGAAATGAACGTTCGGGCATTGAGCCGGTCGGAAAGGC
66 TGAACTCCATATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCACTCAGCCGCTCGGAAAGGC
* *
16462920 ATAATGCGCAAGTCGAGGATCGACCCGA
131 AGAATGCGCAAGCCGAGGATCGACCCGA
* * * **
16462948 TCCCCCTTTTCGTGCTACCGATCCCG-TTGCCACAACCCTTGGTCCGGT-TGGGGCTTAGACAT-
1 TCCCCC-CTGCGTGCTACCGATCCTGCTT-CCACAACCCTTGGTCCGGTCT-GATCTTAGAC-TG
* * ***
16463010 GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGTTGTGCGGG-AGCTCAGCCAGCT-GG
62 GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCA-CTCAGCC-GCTCGG
* * * *
16463073 AGAGGCAGAATGCGTAAGCCGGGGATCGACCTGA
125 AAAGGCAGAATGCGCAAGCCGAGGATCGACCCGA
* *
16463107 TCCCCCCTGCGTGCTGCCGATCCTGCTTCCGCAACCCTTGGTCCGGTCTGATCTTAGACTGGGAA
1 TCCCCCCTGCGTGCTACCGATCCTGCTTCCACAACCCTTGGTCCGGTCTGATCTTAGACTGGGAA
16463172 TGAACTC
66 TGAACTC
16463179 TGTATGCTTA
Statistics
Matches: 184, Mismatches: 38, Indels: 18
0.77 0.16 0.08
Matches are distributed among these distances:
157 1 0.01
158 61 0.33
159 119 0.65
160 3 0.02
ACGTcount: A:0.21, C:0.31, G:0.25, T:0.22
Consensus pattern (158 bp):
TCCCCCCTGCGTGCTACCGATCCTGCTTCCACAACCCTTGGTCCGGTCTGATCTTAGACTGGGAA
TGAACTCCATATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCACTCAGCCGCTCGGAAAGGC
AGAATGCGCAAGCCGAGGATCGACCCGA
Found at i:16463188 original size:26 final size:26
Alignment explanation
Indices: 16463159--16463211 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16463149 CCGGTCTGAT
*
16463159 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
*
16463185 CTTAGACTAGGTATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
16463211 C
1 C
16463212 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:16463931 original size:26 final size:26
Alignment explanation
Indices: 16463893--16463945 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16463883 GGCTCAAACT
*
16463893 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16463919 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16463945 C
1 C
16463946 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16464273 original size:26 final size:26
Alignment explanation
Indices: 16464237--16464289 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16464227 TTGGTCCGAT
* *
16464237 CTTAGACTGGGAATTAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16464263 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16464289 C
1 C
16464290 CTATGTCCCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16465947 original size:159 final size:161
Alignment explanation
Indices: 16465468--16466040 Score: 567
Period size: 159 Copynumber: 3.6 Consensus size: 161
16465458 GGCTCAAACT
* * * * *
16465468 CTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGTGCTCAA
1 CTTAGACTATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCAG
* ** * *
16465532 CCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATTTACCCGATCCCCCTCTGTGTGCTG-CTGGT
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCCGCGTGCTGTC-GGT
* * * *
16465596 CCCGCTGCCCCAACCATCGATCC-AGCTGGGG
130 CCCGCTACCACAACCCTCGGTCCGAGCTGGGG
* * *
16465627 CTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACTCACGAAA-GAAGCGTGCAAGCGCTCA
1 CTTAGACTATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATG-AGCGTGCAGGCGCTCA
* * * ** * * *
16465690 GCC-ACCGGAGAGG-AGAATGCGTAAGCCGGGGACCGGCCCGATCCTTCTCGGCATGCTGTCGAT
65 GCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCCGCGTGCTGTCGGT
** * * * **
16465753 CCTACTACTACAACCCTCAGTCCGATCT-GAT
130 CCCGCTACCACAACCCTCGGTCCGAGCTGGGG
* * * * * * *
16465784 CTTAGACTA-GGAATGAACTCTGTAAGCCTAAGTCAACCCACGAAATGAGCGTTCGGGCACTGAG
1 CTTAGACTATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCAG
* * * ** *
16465848 CCGATCGGAGAGGCATAATGTGCAAGCTAGGGATCGACCCGATCCCCCTCCACGTGCTGTCGGTC
66 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCCGCGTGCTGTCGGTC
*
16465913 CCGCTACCACAACCCTTGGTCCGA-CTGGGG
131 CCGCTACCACAACCCTCGGTCCGAGCTGGGG
* * *
16465943 CTTAGA-GATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCGTGC-GTGCGCTCA
1 CTTAGACTATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAG-GCGCTCA
* * *
16466006 GCCGACCGGAGAGGTAGAATGGGCAAGCCGAGGAT
65 GCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGAT
16466041 TGGCCTGGTC
Statistics
Matches: 328, Mismatches: 75, Indels: 22
0.77 0.18 0.05
Matches are distributed among these distances:
157 105 0.32
158 29 0.09
159 194 0.59
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.18
Consensus pattern (161 bp):
CTTAGACTATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCAGGCGCTCAG
CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCCGCGTGCTGTCGGTC
CCGCTACCACAACCCTCGGTCCGAGCTGGGG
Found at i:16466137 original size:26 final size:26
Alignment explanation
Indices: 16466101--16466153 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16466091 CCAGTTTGAT
* *
16466101 CTTAGACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
16466127 CTTACACTGGGGATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
16466153 C
1 C
16466154 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:16466851 original size:26 final size:26
Alignment explanation
Indices: 16466813--16466865 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16466803 GGCTCAAACT
16466813 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16466839 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16466865 C
1 C
16466866 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16467206 original size:26 final size:26
Alignment explanation
Indices: 16467156--16467208 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16467146 CTGGTCTGAT
**
16467156 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
16467182 CTTAGAGTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16467208 C
1 C
16467209 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.15, G:0.30, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16467379 original size:26 final size:26
Alignment explanation
Indices: 16467341--16467391 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16467331 TTGATCCAAT
16467341 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16467367 CTTAGACAT-GGAATGAACTCCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
16467392 ACCCTAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16467386 original size:185 final size:184
Alignment explanation
Indices: 16466997--16467420 Score: 466
Period size: 184 Copynumber: 2.3 Consensus size: 184
16466987 TTCAGCTGGG
* ** *
16466997 GCTTAGACATGGAATGAACTCCCTATGCCTAAGTCAACCCATCAAACGGGCGTGCAGGTGTTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCATCAAACAAGCGTGCAGGTGCTCAA
* * *
16467062 CCAGCCGGAGAGGCAGAATGCCCAAGCCAGGGATCGGCCCGATCCCCCCTATGTGCTGTCGATCC
66 CCAGCCAGAGAGGCAGAATGCCCAAGCCAGGGATCGACCCGATCCCCCCTATGTGCTATCGATCC
* * ** **
16467127 TGCTGCCTCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTTGTAT
131 TGCTGCCTCAACCCTCAGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTAT
* * * * **
16467181 GCTTAGA-GTGGGGATGAACTCCGTATGCCTAAGTCAACCCA-CGACACAATCGTGTGGGTGCTC
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCATC-AAACAAGCGTGCAGGTGCTC
* * *
16467244 AACC-GATCAGAGAGGCAGAATGCGCAAGTCAGGGATCGACCC-AGTCCCCCCT-TGCATGCTAT
64 AACCAG-CCAGAGAGGCAGAATGCCCAAGCCAGGGATCGACCCGA-TCCCCCCTATG--TGCTAT
* * *
16467306 CGATCCTGCTATCGT-AACCCTCAGTTTGATCCAATCTTAGACTGGGAATGAACTCCGTAT
125 CGATCCTGCT-GCCTCAACCCTCAGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTAT
* * * *
16467366 GCTTAGACATGGAATGAACTCCGTATACCCT-AGCCAACCCATGAAATAAGCGTGC
1 GCTTAGACATGGAATGAACTCCGTAT-GCCTAAGTCAACCCATCAAACAAGCGTGC
16467421 GGGCACTCAA
Statistics
Matches: 196, Mismatches: 34, Indels: 19
0.79 0.14 0.08
Matches are distributed among these distances:
183 6 0.03
184 92 0.47
185 92 0.47
186 6 0.03
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.22
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCATCAAACAAGCGTGCAGGTGCTCAA
CCAGCCAGAGAGGCAGAATGCCCAAGCCAGGGATCGACCCGATCCCCCCTATGTGCTATCGATCC
TGCTGCCTCAACCCTCAGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTAT
Found at i:16467451 original size:185 final size:184
Alignment explanation
Indices: 16466997--16467458 Score: 493
Period size: 185 Copynumber: 2.5 Consensus size: 184
16466987 TTCAGCTGGG
* * ** * *
16466997 GCTTAGACATGGAATGAACTCCCTATGCCTAAGTCAACCCATCAAACGGGCGTGCAGGTGTTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGTGCTCAA
* * * * *
16467062 CCAGCCGGAGAGGCAGAATGCCCAAGCCAGGGATCGGCCCGATCCCCCCTATGTGCTGTCGATCC
66 CCGGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTATGTGCTATCGATCC
* * ** **
16467127 TGCTGCCTCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTTGTAT
131 TGCTGCCTCAACCCTCAGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTAT
* * * * * *
16467181 GCTTAGA-GTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGACACAATCGTGTGGGTGCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGTGCTCA
** *
16467245 ACCGATCAGAGAGGCAGAATGCGCAAGTCAGGGATCGACCC-AGTCCCCCCT-TGCATGCTATCG
65 ACCGGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGA-TCCCCCCTATG--TGCTATCG
* * *
16467308 ATCCTGCTATCGT-AACCCTCAGTTTGATCCAATCTTAGACTGGGAATGAACTCCGTAT
127 ATCCTGCT-GCCTCAACCCTCAGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTAT
* * * **
16467366 GCTTAGACATGGAATGAACTCCGTATACCCT-AGCCAACCCATGAAATAAGCGTGCGGGCACTCA
1 GCTTAGACATGGAATGAACTCCGTAT-GCCTAAGTCAACCCATGAAACAAGCGTGCGGGTGCTCA
* * * *
16467430 ACCGGCCTGAAAGGTAGAATGCGTAAGCC
65 ACCGGCCAGAGAGGCAGAATGCGCAAGCC
16467459 GAGGACCAGT
Statistics
Matches: 224, Mismatches: 47, Indels: 13
0.79 0.17 0.05
Matches are distributed among these distances:
183 4 0.02
184 92 0.41
185 122 0.54
186 6 0.03
ACGTcount: A:0.26, C:0.28, G:0.25, T:0.21
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGTGCTCAA
CCGGCCAGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTATGTGCTATCGATCC
TGCTGCCTCAACCCTCAGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTAT
Found at i:16467884 original size:26 final size:26
Alignment explanation
Indices: 16467844--16467894 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
16467834 CTGTCTAATC
16467844 TTAGACTAGGAATGAACTCCATATGT
1 TTAGACTAGGAATGAACTCCATATGT
* * *
16467870 TTAGACTGGGGATGAACTCCGTATG
1 TTAGACTAGGAATGAACTCCATATG
16467895 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCATATGT
Found at i:16468527 original size:26 final size:26
Alignment explanation
Indices: 16468489--16468541 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16468479 GGCTCAAACT
** * *
16468489 CTTAGACTGGGAATGAATTCCGTATG
1 CTTAGACAAGGAACGAACTCCGTATG
16468515 CTTAGACAAGGAACGAACTCCGTATG
1 CTTAGACAAGGAACGAACTCCGTATG
16468541 C
1 C
16468542 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACAAGGAACGAACTCCGTATG
Found at i:16468867 original size:26 final size:26
Alignment explanation
Indices: 16468831--16468883 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16468821 CCGATCCGAT
*
16468831 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16468857 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16468883 C
1 C
16468884 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16469988 original size:15 final size:15
Alignment explanation
Indices: 16469965--16469994 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
16469955 CGGTGATGCA
*
16469965 CCGGTGATGGTGCCC
1 CCGGCGATGGTGCCC
16469980 CCGGCGATGGTGCCC
1 CCGGCGATGGTGCCC
16469995 GAGTGAAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.07, C:0.37, G:0.40, T:0.17
Consensus pattern (15 bp):
CCGGCGATGGTGCCC
Found at i:16470095 original size:26 final size:26
Alignment explanation
Indices: 16470057--16470109 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16470047 GGCTCAAACA
16470057 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
16470083 CTTAGACAT-GGAATGAACTTCGTATG
1 CTTAGAC-TGGGAATGAACTTCGTATG
16470109 C
1 C
16470110 CTAAGCCAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:16470626 original size:26 final size:26
Alignment explanation
Indices: 16470597--16470649 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16470587 CCGGTCCGAT
16470597 CTTAGAC-TGAGAACGAACTCCGTATG
1 CTTAGACATG-GAACGAACTCCGTATG
*
16470623 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAACGAACTCCGTATG
16470649 C
1 C
16470650 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACATGGAACGAACTCCGTATG
Found at i:16470737 original size:197 final size:196
Alignment explanation
Indices: 16470380--16470757 Score: 467
Period size: 197 Copynumber: 1.9 Consensus size: 196
16470370 CTGCTGCCGT
* * *
16470380 AACCCTCGGTCCAGTTCAATCTTAGGCTGGGACTGAACTCCGTATGCTTAGACTGGGGAAGAACT
1 AACCCTCGGTCCAGTCCAATCTTAGACTGGAACTGAACTCCGTATGCTTAGACT-GGGAAGAACT
* * * *
16470445 CCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGTTCAGCCGATCGGAGAGGTAGAATG
65 CCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCAGCCGACCGGAGAGGTAGAATG
* *
16470510 CGTAAGCCAGGGATCGGCCCGGTCCCCCCTTGCATGCTACCGATCCTACTGCTGGTCCTACTATC
130 CGCAAGCCAGGGATCGGCCCGGTCCCCCCTTACATGCTACCGATCCTACTGCTGGTCCTACTATC
16470575 GC
195 GC
* *
16470577 AACCCTCGGTCCGGTCCGATCTTAGACTGAGAAC-GAACTCCGTATGCTTAGACAT-GGAATGAA
1 AACCCTCGGTCCAGTCCAATCTTAGACTG-GAACTGAACTCCGTATGCTTAGAC-TGGGAA-GAA
** * * * *
16470640 CTCCGTATGCCTAAGCCAACCCCATTAAATGAGCGTACGTGCGCTCAGCCGGCCGGAGAGGTAGA
63 CTCCGTATGCCTAAGCCAA-CCCACGAAACGAGCATACGGGCGCTCAGCCGACCGGAGAGGTAGA
* * * * * *
16470705 ATGGGCAAGTC-GAGGATTGGCCTGGT-CCCCCTTACGTGCTATCGATCCTACTG
127 ATGCGCAAGCCAG-GGATCGGCCCGGTCCCCCCTTACATGCTACCGATCCTACTG
16470758 TCGCAACCCT
Statistics
Matches: 153, Mismatches: 23, Indels: 10
0.82 0.12 0.05
Matches are distributed among these distances:
196 4 0.03
197 90 0.59
198 59 0.39
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (196 bp):
AACCCTCGGTCCAGTCCAATCTTAGACTGGAACTGAACTCCGTATGCTTAGACTGGGAAGAACTC
CGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCAGCCGACCGGAGAGGTAGAATGC
GCAAGCCAGGGATCGGCCCGGTCCCCCCTTACATGCTACCGATCCTACTGCTGGTCCTACTATCG
C
Found at i:16471553 original size:26 final size:26
Alignment explanation
Indices: 16471515--16471567 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16471505 GGCTCAAACT
16471515 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16471541 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16471567 C
1 C
16471568 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16472034 original size:26 final size:26
Alignment explanation
Indices: 16471995--16472047 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16471985 CCGATCCGAT
*
16471995 CTTAGACTGAGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
16472021 CTTAGACATG-GAATGAATTCCGTATG
1 CTTAGAC-TGAGAATGAACTCCGTATG
16472047 C
1 C
16472048 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:16472212 original size:26 final size:26
Alignment explanation
Indices: 16472183--16472235 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16472173 CCGATCCGAT
16472183 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
16472209 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
16472235 C
1 C
16472236 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:16472222 original size:188 final size:188
Alignment explanation
Indices: 16471984--16472330 Score: 509
Period size: 188 Copynumber: 1.8 Consensus size: 188
16471974 CAACCCTCGG
* *
16471984 TCCGATCCGATCTTAGACTGAGAATGAACTCTGTATGCTTAGACATGGAATGAATTCCGTATGCC
1 TCCGATCCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCC
* * ** *
16472049 TAAGCCAACCCACGAAACAAGCGTGTGAGCGATCAGTCGACCGGAGAGGCAGAATGCATGAGCT-
66 TAAGCCAACCCACGAAACAAGCATGCGAGCGATCAACCGACCGGAGAGGCAGAATGCATAAGCTA
*
16472113 GAGGATCGGCCCTG-TCCCCCCTACGTGCTACCGATCCTGCTACCACAACCCACGATTGA
131 G-GGACCGGCCC-GATCCCCCCTACGTGCTACCGATCCTGCTACCACAACCCACGATTGA
*
16472172 TCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCC
1 TCCGATCCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCC
* * * * * * *
16472237 TAAGCCAACCTATGAAACGAGCATGCGGGCGCTCAACCGATCGGAGAGGCAGAATGCGTAAGCTA
66 TAAGCCAACCCACGAAACAAGCATGCGAGCGATCAACCGACCGGAGAGGCAGAATGCATAAGCTA
*
16472302 GGGACCGGCCCGATCCCCCCTGCGTGCTA
131 GGGACCGGCCCGATCCCCCCTACGTGCTA
16472331 TCAATCCTAC
Statistics
Matches: 140, Mismatches: 17, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
187 1 0.01
188 138 0.99
189 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.25, T:0.20
Consensus pattern (188 bp):
TCCGATCCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCC
TAAGCCAACCCACGAAACAAGCATGCGAGCGATCAACCGACCGGAGAGGCAGAATGCATAAGCTA
GGGACCGGCCCGATCCCCCCTACGTGCTACCGATCCTGCTACCACAACCCACGATTGA
Found at i:16472736 original size:159 final size:159
Alignment explanation
Indices: 16472208--16472832 Score: 587
Period size: 159 Copynumber: 3.9 Consensus size: 159
16472198 AACTCCGTAT
* * *
16472208 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTATGAAACGAGCATGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
* * * * * * * *
16472273 CCGATCGGAGAGGCAGAATGCGTAAGCTAGGGACCGGCCCGATCCCCC-CTGCGTGCTATCAATC
66 CCGGTCAGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCTCTGCGTGCTGTCGATC
* * * * * * *
16472337 CTACTGCCATAACCTTCGGTTCGA-TCCGA
131 CCACTGCCACAACCCTCGGTCCAACT-AGG
* * * ** * * ** *
16472366 ACTTAGA-TTGGGAATAAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGTTTGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * * * ** *
16472430 GCCAGTCAGAGAGGCATAATGCTCAAGCCGGGGATCAACCCGATCCCTTTCTGCATGCTGTCGAT
65 ACCGGTCAGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCTCTGCGTGCTGTCGAT
* *
16472495 CCCGCTGCCACAACCCTCGGTCCAGCTAGG
130 CCCACTGCCACAACCCTCGGTCCAACTAGG
*
16472525 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGGAAC-AGGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGA-GCGTGCGGGCGCTCA
* * * * *
16472589 GCCGGTCAGAAAGGTAGAATGCGCAAGCTGGGGATTGACCCGGTCCCCCTCTGCGTGCTGTCGAT
65 ACCGGTCAGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCTCTGCGTGCTGTCGAT
*
16472654 CCCACTGCCACAACCCTCGATCCAACTAGG
130 CCCACTGCCACAACCCTCGGTCCAACTAGG
* ** * * *
16472684 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAGCCACAAAACGGGCGTGC-GACGCTTAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
* * * * *** * * *
16472748 CCGGCCGGAGAGGTAGAATGCGTAAGCCAAGGATCGGCCCGAT-CCCTTCTGCGTGTTGTCGATC
66 CCGGTCAGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCTCTGCGTGCTGTCGATC
** * *
16472812 CTGCTACCGCAACCCTCGGTC
131 CCACTGCCACAACCCTCGGTC
16472833 TGGTCTGAAC
Statistics
Matches: 373, Mismatches: 88, Indels: 13
0.79 0.19 0.03
Matches are distributed among these distances:
157 36 0.10
158 126 0.34
159 209 0.56
160 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
CCGGTCAGAGAGGCAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCTCTGCGTGCTGTCGATC
CCACTGCCACAACCCTCGGTCCAACTAGG
Found at i:16473590 original size:26 final size:26
Alignment explanation
Indices: 16473554--16473603 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
16473544 GCTCAAATTG
* *
16473554 TTAGACTTGGAATGAACTCCGTATCC
1 TTAGACATGGAATCAACTCCGTATCC
*
16473580 TTAGACATGGAATCAGCTCCGTAT
1 TTAGACATGGAATCAACTCCGTAT
16473604 GCCTAAGCCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (26 bp):
TTAGACATGGAATCAACTCCGTATCC
Found at i:16473925 original size:26 final size:26
Alignment explanation
Indices: 16473896--16473948 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16473886 CTGATCTGAT
* *
16473896 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16473922 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16473948 C
1 C
16473949 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16474123 original size:26 final size:26
Alignment explanation
Indices: 16474094--16474144 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16474084 TGGTCTGATC
16474094 TTAGAC-TGGGAATGAACTCTGTATGA
1 TTAGACAT-GGAATGAACTCTGTATGA
16474120 TTAGACATGGAATGAACTCTGTATG
1 TTAGACATGGAATGAACTCTGTATG
16474145 CCTAAGCCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.12, G:0.25, T:0.31
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCTGTATGA
Found at i:16474646 original size:26 final size:26
Alignment explanation
Indices: 16474587--16474647 Score: 95
Period size: 26 Copynumber: 2.3 Consensus size: 26
16474577 CTCGATCCGG
*
16474587 TCCGTATGCTTAGACTGGGGATGAAC
1 TCCGTATGCTTAAACTGGGGATGAAC
**
16474613 TCTATATGCTTAAACTGGGGATGAAC
1 TCCGTATGCTTAAACTGGGGATGAAC
16474639 TCCGTATGC
1 TCCGTATGC
16474648 CTAAGTCAAC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.30
Consensus pattern (26 bp):
TCCGTATGCTTAAACTGGGGATGAAC
Found at i:16475629 original size:158 final size:156
Alignment explanation
Indices: 16475467--16475829 Score: 388
Period size: 158 Copynumber: 2.3 Consensus size: 156
16475457 TTGTTACTGT
* * *
16475467 AACCCTCAGTCTGGTTCGATCTTAGAGTGGGAATGAACTTTGTATGCCTAAGTCAACACATGAAA
1 AACCCTC-GTCTGG-TCGATCTTAGAATGGGAATGAACTCTGTATGCCTAAGCCAACACATGAAA
* * * * *
16475532 CGAGCGTTCGGGTGCTGA-ACGGCCGAAGAGGCATAATGCGCAAGTCGGGGATCGGCCCGATCCC
64 CGAGCGTGCGGGTGCTCAGACAGCCGAAGAGGCAGAATGCGCAAGACGGGGATCGGCCCGAT-CC
* *
16475596 CCTCTATGTGCTACCGGTCCAGCTGCCAC
128 CCTCTACGTGCTACCGATCCAGCTGCCAC
* * ** ** *
16475625 AACCCTCGATCTGACTAGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAA
1 AACCCTCG-TCTG-GTCGATCTTAGA-ATGGGAATGAACTCTGTATGCCTAAGCCAACACATGAA
* * * *
16475689 ATGGGCGTGCGGGTGCTCAGTCAGCCGGAGAGGCAGAATGCGCAAGACGGGGATCGGCCCGATCC
63 ACGAGCGTGCGGGTGCTCAGACAGCCGAAGAGGCAGAATGCGCAAGACGGGGATCGGCCCGATCC
* * * * **
16475754 CCTCTGCGTGCTGCCGATCCTGCTGTCGT
128 CCTCTACGTGCTACCGATCCAGCTGCCAC
*
16475783 AACCCTCGGTCCGGTCTGATCTTAGAATGGGAATGAACTCTGTATGC
1 AACCCTC-GTCTGGTC-GATCTTAGAATGGGAATGAACTCTGTATGC
16475830 TTAGACTGGG
Statistics
Matches: 164, Mismatches: 34, Indels: 14
0.77 0.16 0.07
Matches are distributed among these distances:
157 4 0.02
158 120 0.73
159 40 0.24
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (156 bp):
AACCCTCGTCTGGTCGATCTTAGAATGGGAATGAACTCTGTATGCCTAAGCCAACACATGAAACG
AGCGTGCGGGTGCTCAGACAGCCGAAGAGGCAGAATGCGCAAGACGGGGATCGGCCCGATCCCCT
CTACGTGCTACCGATCCAGCTGCCAC
Found at i:16476546 original size:26 final size:26
Alignment explanation
Indices: 16476508--16476560 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16476498 GGGTCAAACT
16476508 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16476534 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16476560 C
1 C
16476561 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16476887 original size:26 final size:26
Alignment explanation
Indices: 16476851--16476903 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16476841 CCGGTCCGAT
*
16476851 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16476877 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
16476903 C
1 C
16476904 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16476975 original size:184 final size:185
Alignment explanation
Indices: 16476692--16477259 Score: 618
Period size: 197 Copynumber: 3.0 Consensus size: 185
16476682 TCCGACTGTG
* * * * *
16476692 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACTCACGAAACGGGCGTGTGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACTAACGAAACGAGCGTGCGGGCGCTCAG
* * * * ** *
16476757 CCAATCAGAGAGGCAGAATGCGCAAGTTGGGGATCGCCCCGAT-CCCCCCTGCGTGCTGCCGATC
66 CCGACCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGATCCCCCCCTGCGTGCTGCCGATC
*
16476821 CTGCTACCGTAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCATAT
131 CTGCTACCGTAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATAT
* * * *
16476876 GCTTAGAC-TGGGGATGAACTCCATATGCCTAAGTCAACTGACGAAACGAGCGTGCAGGCGCTCA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACTAACGAAACGAGCGTGCGGGCGCTCA
* *
16476940 GCCGGCCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACTCGATCCCCCCCTGCGTGCTACCGAT
65 GCCGACCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGATCCCCCCCTGC--G-T---G--
* * * *
16477005 CCTGCTGCTGGTCCTGCTACCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCA
122 -CTGC--C-GATCCTGCTACCGTAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCA
16477070 TAT
183 TAT
* * * * *
16477073 GCCTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCAACGAATCGAGCGTGCGGGCTCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACTAACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * * * *
16477138 CCGACCGGAGAGGTAGAATACGTAACCCGGGGATCGGCCCGGTGCCCCCATGTGTGCTGTCGATT
66 CCGACCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGATCCCCCCCTGCGTGCTGCCGATC
* * * * *
16477203 CTGGTGCCGTAACCCTTGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCTTAT
131 CTGCTACCGTAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATAT
16477258 GC
1 GC
16477260 CTAAGTCAAC
Statistics
Matches: 317, Mismatches: 52, Indels: 29
0.80 0.13 0.07
Matches are distributed among these distances:
183 1 0.00
184 89 0.28
185 60 0.19
186 1 0.00
187 1 0.00
188 4 0.01
191 2 0.01
194 5 0.02
195 1 0.00
196 1 0.00
197 151 0.48
198 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.21
Consensus pattern (185 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACTAACGAAACGAGCGTGCGGGCGCTCAG
CCGACCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGATCCCCCCCTGCGTGCTGCCGATC
CTGCTACCGTAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATAT
Found at i:16479393 original size:24 final size:24
Alignment explanation
Indices: 16479337--16479394 Score: 82
Period size: 24 Copynumber: 2.4 Consensus size: 24
16479327 CTCCTAGTCT
*
16479337 ACTGACCAAT-GCAGTTCATGGTCC
1 ACTGACC-ATCGCAGCTCATGGTCC
*
16479361 ACAGACCATCGCAGCTCATGGTCC
1 ACTGACCATCGCAGCTCATGGTCC
16479385 ACTGACCATC
1 ACTGACCATC
16479395 CCACTTGTGG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
23 2 0.07
24 28 0.93
ACGTcount: A:0.26, C:0.34, G:0.19, T:0.21
Consensus pattern (24 bp):
ACTGACCATCGCAGCTCATGGTCC
Found at i:16482854 original size:26 final size:26
Alignment explanation
Indices: 16482818--16482870 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16482808 CTGGTCTGAT
16482818 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16482844 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16482870 C
1 C
16482871 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16484520 original size:26 final size:26
Alignment explanation
Indices: 16484484--16484536 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16484474 CCGATCCGAT
16484484 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
16484510 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
16484536 C
1 C
16484537 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:16484700 original size:196 final size:187
Alignment explanation
Indices: 16484449--16485345 Score: 787
Period size: 183 Copynumber: 4.7 Consensus size: 187
16484439 TACGTGCTAC
* * * * * * *
16484449 CGATCCTACTGCCGTAACCCGCGGTCCGATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTA
1 CGATCCTGCTGCCGCAACCCTCGATCTGATCTGATCTTAGACTGAGAATGAACTCTGTATGCTTA
* * * * *
16484514 GACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAAGGAGCGTACGAGCGCTCAGCCGAT
66 GACT-GGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGAC
* * * *
16484579 CGGAGAGGTAGAATGCGTAAGCCAGGGATCAGCCCGGTCACCCCTGCGTGCTATCGATACTGCT
130 CGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCTCGATC-CCCC--C-TGCTATCG-TACTG-T
** * * *
16484643 ACTGGGCCTGCTGCCGTAACCTTTGATCTGATCTGATCTTAGACTGAGAATGAACTCTGTATGCT
1 -C-GATCCTGCTGCCGCAACCCTCGATCTGATCTGATCTTAGACTGAGAATGAACTCTGTATGCT
* * * *
16484708 TAGACATGGAATGAACTCTGTATGCCTTAGTCAACCCATGAAACGAGCATGCGGGCGCTCAGCCT
64 TAGAC-TGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCG
* * ** * *
16484773 ACCGGAGATGCAGAATGTGCAAGCTGGGGATTAACTCGATCCCCCC--CTA-CGTACTGT
128 ACCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCTCGATCCCCCCTGCTATCGTACTGT
* * * * * *
16484830 CGATCCAGCTACCGTAA-CC-CGATCTGGTCCGATCTTAGACT-AGGAATGAACTCCGTATGCTT
1 CGATCCTGCTGCCGCAACCCTCGATCTGATCTGATCTTAGACTGA-GAATGAACTCTGTATGCTT
* * *
16484892 AGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCGCTTAGCCTG
65 AGACT-GGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCC-G
** * * * * *
16484957 -CCGGAGAGGCAGAATGTACAAGCCGGGGATCGGCTCAATCCCCCCTGCGTGCTGTCGATCCTGC
128 ACCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCTCGAT-CCCCC--C-TGCTATCG-TACTG-
16485021 T
187 T
* * * * * *
16485022 GCTGGTCCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTG-GAATGAACTCTATATGGT
1 -C-GATCCTGCTGCCGCAACCCTCGATCTGATCTGATCTTAGACTGAGAATGAACTCTGTATGCT
** ** * * * * *
16485086 TAGACATGCAATGAACTCCATATACCTAAGCCAACCCATAAAACCAGCGTGCGGGCGCTCAGTCG
64 TAGAC-TGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * **
16485151 ACCGGAGAGGCAGAATACGTAAGCTAGGGATCGGCTCGGGCCCCCCTGC-AT-G-A-TGT
128 ACCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCTCGATCCCCCCTGCTATCGTACTGT
* * * *
16485207 CGATCATGCTGCCGCAACCCTCGGTCCGATCTGATCTTAGACT-AGGAATGAACTCCGTATGCTT
1 CGATCCTGCTGCCGCAACCCTCGATCTGATCTGATCTTAGACTGA-GAATGAACTCTGTATGCTT
* *
16485271 AGACTAGGGATGAACT-TCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCG
65 AGACT-GGGATGAACTCT-GTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCG
* *
16485335 GCCGAAGAGGC
128 ACCGGAGAGGC
16485346 CGACCAGAGA
Statistics
Matches: 573, Mismatches: 104, Indels: 61
0.78 0.14 0.08
Matches are distributed among these distances:
182 2 0.00
183 164 0.29
184 82 0.14
185 13 0.02
186 4 0.01
187 1 0.00
188 5 0.01
189 5 0.01
190 6 0.01
191 7 0.01
192 2 0.00
193 2 0.00
194 17 0.03
195 104 0.18
196 158 0.28
197 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (187 bp):
CGATCCTGCTGCCGCAACCCTCGATCTGATCTGATCTTAGACTGAGAATGAACTCTGTATGCTTA
GACTGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACC
GGAGAGGCAGAATGCGCAAGCCAGGGATCAGCTCGATCCCCCCTGCTATCGTACTGT
Found at i:16484709 original size:26 final size:27
Alignment explanation
Indices: 16484680--16484737 Score: 93
Period size: 26 Copynumber: 2.2 Consensus size: 27
16484670 CTGATCTGAT
16484680 CTTAGAC-TGAGAATGAACTCTGTATG-
1 CTTAGACATG-GAATGAACTCTGTATGC
16484706 CTTAGACATGGAATGAACTCTGTATGC
1 CTTAGACATGGAATGAACTCTGTATGC
16484733 CTTAG
1 CTTAG
16484738 TCAACCCATG
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
26 23 0.77
27 7 0.23
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.31
Consensus pattern (27 bp):
CTTAGACATGGAATGAACTCTGTATGC
Found at i:16484748 original size:27 final size:26
Alignment explanation
Indices: 16484691--16484749 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
16484681 TTAGACTGAG
***
16484691 AATGAACTCTGTATGCTTAGACATGG
1 AATGAACTCTGTATGCTTAGACAACC
*
16484717 AATGAACTCTGTATGCCTTAGTCAACC
1 AATGAACTCTGTATG-CTTAGACAACC
*
16484744 CATGAA
1 AATGAA
16484750 ACGAGCATGC
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 15 0.56
27 12 0.44
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.29
Consensus pattern (26 bp):
AATGAACTCTGTATGCTTAGACAACC
Found at i:16484892 original size:26 final size:26
Alignment explanation
Indices: 16484863--16484915 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16484853 CTGGTCCGAT
16484863 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
16484889 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16484915 C
1 C
16484916 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16485100 original size:26 final size:25
Alignment explanation
Indices: 16485060--16485108 Score: 71
Period size: 26 Copynumber: 1.9 Consensus size: 25
16485050 TGGTCTGATC
* *
16485060 TTAGACTGGAATGAACTCTATATGG
1 TTAGACTGCAATGAACTCCATATGG
16485085 TTAGACATGCAATGAACTCCATAT
1 TTAGAC-TGCAATGAACTCCATAT
16485109 ACCTAAGCCA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 6 0.29
26 15 0.71
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.31
Consensus pattern (25 bp):
TTAGACTGCAATGAACTCCATATGG
Found at i:16485210 original size:195 final size:195
Alignment explanation
Indices: 16484852--16485345 Score: 473
Period size: 195 Copynumber: 2.6 Consensus size: 195
16484842 CGTAACCCGA
* ** * *
16484852 TCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCC
1 TCTGGTCCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGCAATGAACTCCATATACC
* * * * *
16484917 TAAGTCAACCCATGAAACGAGCATGCGGGCGCTTAGCCTGCCGGAGAGGCAGAATGTACAAGCCG
66 TAAGCCAACCCATAAAACCAGCATGCGGGCGCTCAGCCTGCCGGAGAGGCAGAATGTA-AAGCCA
* * * *
16484982 GGGATCGGCTCAATCCCCCCTGCGTGCTGTCGATCCTGCTGCTGGTCCTGCTGCCACAACCCTCG
130 GGGATCGGCTCAAGCCCCCCTGCATGATGTCGATCATGCTGCTGGTCCTGCTGCCACAACCCTCG
16485047 G
195 G
* * *
16485048 TCTGGTCTGATCTTAGACT-GGAATGAACTCTATATGGTTAGACAT-GCAATGAACTCCATATAC
1 TCTGGTCCGATCTTAGACTAGGAATGAACTCCATATGCTTAGAC-TGGCAATGAACTCCATATAC
* *
16485111 CTAAGCCAACCCATAAAACCAGCGTGCGGGCGCTCAGTC-GACCGGAGAGGCAGAATACGT-AAG
65 CTAAGCCAACCCATAAAACCAGCATGCGGGCGCTCAGCCTG-CCGGAGAGGCAGAAT--GTAAAG
* **
16485174 CTAGGGATCGGCTCGGGCCCCCCTGCATGATGTCGATCA---TGCT-G--C--C-G---CAACCC
127 CCAGGGATCGGCTCAAGCCCCCCTGCATGATGTCGATCATGCTGCTGGTCCTGCTGCCACAACCC
16485227 TCGG
192 TCGG
* * * * * * * *
16485231 TCCGATCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTAGG-GATGAACTTCGTATGC
1 TCTGGTCCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACT-GGCAATGAACTCCATATAC
* ** * * * * *
16485295 CTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCGAAGAGGC
65 CTAAGCCAACCCATAAAACCAGCATGCGGGCGCTCAGCCTGCCGGAGAGGC
16485346 CGACCAGAGA
Statistics
Matches: 252, Mismatches: 38, Indels: 28
0.79 0.12 0.09
Matches are distributed among these distances:
183 28 0.11
184 75 0.30
185 2 0.01
186 1 0.00
187 1 0.00
189 1 0.00
191 1 0.00
192 4 0.02
194 1 0.00
195 117 0.46
196 19 0.08
197 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (195 bp):
TCTGGTCCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGCAATGAACTCCATATACC
TAAGCCAACCCATAAAACCAGCATGCGGGCGCTCAGCCTGCCGGAGAGGCAGAATGTAAAGCCAG
GGATCGGCTCAAGCCCCCCTGCATGATGTCGATCATGCTGCTGGTCCTGCTGCCACAACCCTCGG
Found at i:16485245 original size:379 final size:379
Alignment explanation
Indices: 16484449--16485345 Score: 1104
Period size: 379 Copynumber: 2.4 Consensus size: 379
16484439 TACGTGCTAC
* *
16484449 CGATCCTA-CTGCCGTAACCCGCGGTCCGATCCGATCTTAGACTGGGAATGAACTCTGTATGCTT
1 CGATCC-AGCTGCCGTAACCC-CGGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCTT
* * *
16484513 AGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAAGGAGCGTACGAGCGCTCAGCCGA
64 AGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCG-
* * ** **
16484578 TCGGAGAGGTAGAATGCGTAAGCCAGGGATCAGCCCGGTCACCCCTGCGTGCTATCGATACTGCT
128 CCGGAGAGGCAGAATGCACAAGCCAGGGATCAGCCCAATCACCCCTGCGTGCTATCGATACTGCT
** * * *
16484643 ACTGGGCCTGCTGCCGTAACCTTTGATCTGATCTGATCTTAGACTGAGAATGAACTCTGTATGCT
193 ACTGGGCCTGCTGCCACAACCCTCGATCTGATCTGATCTTAGACTGAGAATGAACTCTATATGCT
* ** * * * * * *
16484708 TAGACATGGAATGAACTCTGTATGCCTTAGTCAACCCATGAAACGAGCATGCGGGCGCTCAGCCT
258 TAGACATGCAATGAACTCCATATACCTAAGCCAACCCATAAAACCAGCATGCGGGCGCTCAGCCG
* ** * * * *
16484773 ACCGGAGATGCAGAATGTGCAAGCTGGGGATTAACTCGATCCCCCCCTACGTACTGT
323 ACCGGAGAGGCAGAATACGCAAGCTAGGGATCAACTCGAGCCCCCCCTACATACTGT
* * * *
16484830 CGATCCAGCTACCGTAA-CCCGATCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAG
1 CGATCCAGCTGCCGTAACCCCGGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAG
* * * *
16484894 ACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCGCTTAGCCTGCC
66 ACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCC-GCC
* * * * * * * *
16484959 GGAGAGGCAGAATGTACAAGCCGGGGATCGGCTCAATCCCCCCTGCGTGCTGTCGATCCTGCTGC
130 GGAGAGGCAGAATGCACAAGCCAGGGATCAGCCCAATCACCCCTGCGTGCTATCGATACTGCTAC
* * * *
16485024 TGGTCCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTG-GAATGAACTCTATATGGTTA
195 TGGGCCTGCTGCCACAACCCTCGATCTGATCTGATCTTAGACTGAGAATGAACTCTATATGCTTA
* *
16485088 GACATGCAATGAACTCCATATACCTAAGCCAACCCATAAAACCAGCGTGCGGGCGCTCAGTCGAC
260 GACATGCAATGAACTCCATATACCTAAGCCAACCCATAAAACCAGCATGCGGGCGCTCAGCCGAC
* ** * *
16485153 CGGAGAGGCAGAATACGTAAGCTAGGGATCGGCTCG-GGCCCCCCTGCATGA-TGT
325 CGGAGAGGCAGAATACGCAAGCTAGGGATCAACTCGAGCCCCCCCTACAT-ACTGT
* *
16485207 CGAT-CATGCTGCCGCAACCCTCGGTCCGATCTGATCTTAGACTAGGAATGAACTCCGTATGCTT
1 CGATCCA-GCTGCCGTAACCC-CGGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCTT
* *
16485271 AGACTAGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGG
64 AGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCC-G
*
16485336 CCGAAGAGGC
128 CCGGAGAGGC
16485346 CGACCAGAGA
Statistics
Matches: 437, Mismatches: 73, Indels: 14
0.83 0.14 0.03
Matches are distributed among these distances:
376 2 0.00
377 24 0.05
378 103 0.24
379 290 0.66
380 4 0.01
381 14 0.03
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (379 bp):
CGATCCAGCTGCCGTAACCCCGGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAG
ACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGCCG
GAGAGGCAGAATGCACAAGCCAGGGATCAGCCCAATCACCCCTGCGTGCTATCGATACTGCTACT
GGGCCTGCTGCCACAACCCTCGATCTGATCTGATCTTAGACTGAGAATGAACTCTATATGCTTAG
ACATGCAATGAACTCCATATACCTAAGCCAACCCATAAAACCAGCATGCGGGCGCTCAGCCGACC
GGAGAGGCAGAATACGCAAGCTAGGGATCAACTCGAGCCCCCCCTACATACTGT
Found at i:16485271 original size:26 final size:26
Alignment explanation
Indices: 16485242--16485294 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16485232 CCGATCTGAT
16485242 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
16485268 CTTAGACTAGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16485294 C
1 C
16485295 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16485602 original size:26 final size:26
Alignment explanation
Indices: 16485566--16485618 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16485556 TGGTTCCAAT
*
16485566 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
16485592 CTTAGACTGGGGATGGACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
16485618 C
1 C
16485619 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16486864 original size:26 final size:26
Alignment explanation
Indices: 16486826--16486878 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16486816 CCGATCTAAT
16486826 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16486852 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
16486878 C
1 C
16486879 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16487237 original size:26 final size:26
Alignment explanation
Indices: 16487208--16487260 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16487198 CCGGTTCGAT
16487208 CTTAGAC-TGGAAATGAACTCCGTATG
1 CTTAGACATGG-AATGAACTCCGTATG
*
16487234 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
16487260 C
1 C
16487261 CTAAACCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:16487360 original size:382 final size:372
Alignment explanation
Indices: 16486471--16487418 Score: 939
Period size: 380 Copynumber: 2.5 Consensus size: 372
16486461 TCCGGCTGGG
* * *
16486471 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCTTGAAACGAGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * **** * **
16486536 TCGGCTGGAGAGGCGGAATGCGCAAGCCGAAGATTATTTTGGTCCCTCCTGCGTGCTGCCGATCT
66 TCGGCCGGAGAGGCGGAATGCGCAACCCG-GGA-TGGCCTGATCCC-CCTGCGTGCTATCGATCT
* * * *
16486601 TGCTACCGCAACCCTCAGTTTGGTCCAATCTTTGACTGGGAATGAACTCCATATGCTTAGACTGG
128 TGCTACCGCAAACCTCAGTCTAGTCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGG
* * *
16486666 GGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCTTGCGGGTGTTCAACCGTCGGAGAG
193 GGATGAACTCTGTATACCTAAGTCAACCCATGAAACGAGCATGCGGGTGTCCAACCGTCGGAGAG
* ** * ** *
16486731 GTAGAATGCGTAAGCCGGGGATCGACCCGGTCTCCCCTTGTGTGCTGTCGATACTGCTGCTGGTC
258 ATAGAATGCACAAGCCGGGGATCAACCCGGTCTCCCCTTGCATGCTGCCGA-ACTGC-GCTGG--
* *
16486796 TTGCTACTGCAACCCTCGATCCGATCTAATCTTAGACTGGGAATGAACTCCATAT
319 TTGC-ACTACAACCCTCGATCCGATCTAATCTTAGACTGGAAATGAACTCCATAT
* * * *
16486851 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGGGCATGCGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * *
16486916 TCGGCCAGAGAGGCAGAATACGTAAGCCAGGGATCGGTCC-GATCCTTCCTGCATGTTATCGATC
66 TCGGCCGGAGAGGCGGAATGCGCAA-CCCGGGAT-GG-CCTGATCC-CCCTGCGTGCTATCGATC
* * * *
16486980 TTGCTGCTGCAAACCTTAGTCTAGTTCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTG
127 TTGCTACCGCAAACCTCAGTCTAGTCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTG
16487045 GGGATGAACTCTGTATACCTAAGTCAACCCATGAAACGAGCATGCAGGTGCTCAGTCGGCCGGAG
192 GGGATGAACTCTGTATACCTAAGTCAACCCATGAAACGAGCATGC-GG-G-T--GT---CC--A-
*
16487110 AGGCCGATCGGAGAGATAGAATGCACAAGCTGGGGATCAACCCGGTC-CCTCCTTGCATGCTGCC
246 A--CCG-TCGGAGAGATAGAATGCACAAGCCGGGGATCAACCCGGTCTCC-CCTTGCATGCTGCC
* * * *
16487174 G-A-T-C-CTGG-TGC-C-ACAACCCTCGGTCCGGT-TCGATCTTAGACTGGAAATGAACTCCGT
307 GAACTGCGCTGGTTGCACTACAACCCTCGATCCGATCT-AATCTTAGACTGGAAATGAACTCCAT
16487231 AT
371 AT
* *
16487233 GCTTAGACATGGAATGAACTCTGTATGCCTAAACCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* ** * *
16487298 CCAACCGGAGAGGTGGAATGCGCAACCCGTGGACTGGCCTGATCCCCCATGCGTGCTATCGATCC
66 TCGGCCGGAGAGGCGGAATGCGCAACCCG-GGA-TGGCCTGATCCCCC-TGCGTGCTATCGATCT
* * * * ** *
16487363 TGCTACCAC-AACTTTCGGTC-CGATCTTATCTTAGACTGGGAATGAACTCCGTATGC
128 TGCTACCGCAAAC-CTCAGTCTAG-TCCAATCTTAGACTGGGAATGAACTCCATATGC
16487419 CTAAGTCAAC
Statistics
Matches: 462, Mismatches: 80, Indels: 50
0.78 0.14 0.08
Matches are distributed among these distances:
379 1 0.00
380 197 0.43
381 16 0.03
382 178 0.39
383 3 0.01
385 5 0.01
388 5 0.01
390 2 0.00
391 2 0.00
392 1 0.00
393 5 0.01
394 47 0.10
ACGTcount: A:0.24, C:0.27, G:0.26, T:0.23
Consensus pattern (372 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
TCGGCCGGAGAGGCGGAATGCGCAACCCGGGATGGCCTGATCCCCCTGCGTGCTATCGATCTTGC
TACCGCAAACCTCAGTCTAGTCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGA
TGAACTCTGTATACCTAAGTCAACCCATGAAACGAGCATGCGGGTGTCCAACCGTCGGAGAGATA
GAATGCACAAGCCGGGGATCAACCCGGTCTCCCCTTGCATGCTGCCGAACTGCGCTGGTTGCACT
ACAACCCTCGATCCGATCTAATCTTAGACTGGAAATGAACTCCATAT
Found at i:16487588 original size:159 final size:158
Alignment explanation
Indices: 16487233--16487679 Score: 386
Period size: 159 Copynumber: 2.8 Consensus size: 158
16487223 AACTCCGTAT
** * * **
16487233 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAACCAACCCATGAAACGAGCGTGCGGGCGCTCA
1 GCTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCTATCA
* * * ** * * * * * * ** *
16487297 GCCAACCGGAGAGGTGGAATGCGCAACCCGTGGA-CTGGCCTGATCCCCCATGCGTGCTATCGAT
65 ACCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATC-GACCCGATCCCCCCTGCATGCTGCCAAT
* ** * * **
16487361 -CCTGCTACCACAACTTTCGGTCCGATCT-TA
129 CCCT-CTGCCACAACCCTCGATCC-AACTGGG
* * * * * *
16487391 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGTCT-TGA
1 GCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCATGCGGG-CTATCA
** * *
16487455 GGCGA-CTGGAGAGGCATAATGCGCAAGCCGAGGATCGACCCGATCCCCCTCTGCATGCTGCCGA
65 ACCGATC-GGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCC-CTGCATGCTGCCAA
16487519 TCCCTCTGCCACAACCCTCGATCCAACTGGG
128 TCCCTCTGCCACAACCCTCGATCCAACTGGG
*
16487550 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGCTATCA
1 GCTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCTATCA
* * * * *
16487614 ACCGATCGGAGAGGTAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCCTGCGTGCTGCCAATC
65 ACCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTGCATGCTGCCAATC
16487679 C
130 C
16487680 TACTGCCGTA
Statistics
Matches: 236, Mismatches: 43, Indels: 20
0.79 0.14 0.07
Matches are distributed among these distances:
157 2 0.01
158 109 0.46
159 120 0.51
160 5 0.02
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (158 bp):
GCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGCTATCAA
CCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTGCATGCTGCCAATCC
CTCTGCCACAACCCTCGATCCAACTGGG
Found at i:16488649 original size:26 final size:26
Alignment explanation
Indices: 16488609--16488661 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
16488599 GGCTCAAACT
16488609 CTTAGACTGGAAATGAAC-CCCGTATG
1 CTTAGACTGGAAATGAACTCCC-TATG
16488635 CTTAGACATGG-AATGAACTCCCTATG
1 CTTAGAC-TGGAAATGAACTCCCTATG
16488661 C
1 C
16488662 CAAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 19 0.76
27 6 0.24
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCCTATG
Found at i:16489027 original size:26 final size:26
Alignment explanation
Indices: 16488989--16489041 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16488979 CCGGTCTGAT
16488989 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16489015 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
16489041 C
1 C
16489042 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16489738 original size:26 final size:26
Alignment explanation
Indices: 16489687--16489739 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16489677 TCGATCCAAT
* *
16489687 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16489713 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
16489739 C
1 C
16489740 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16490159 original size:696 final size:697
Alignment explanation
Indices: 16488634--16490264 Score: 1896
Period size: 698 Copynumber: 2.3 Consensus size: 697
16488624 AACCCCGTAT
* *
16488634 GCTTAGACATGGAATGAACTCCCTATGCCAAAGCCAACCCATGAAACGAGTGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGTGCTCAG
* * * * * *
16488699 TCGGTCGGAGAGGCAGAATGTGCAAGTTGGGGATCGGCTCAGTCCCCCCTGCATGCTACCGATCT
66 CCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCTCA-TCCCCCCTGCATGCTACTGATCC
* * * * * * ** * * * * *
16488764 TACTGTCGCAACCCTCAATCTGGTCCAATCTTAGA-TAGTGAATGAACTCTGCATGATTAGACTA
130 TGCTGCCGTAACCCTCGATCCGATCTGATCTTAGACT-GGGAATGAACTTTGTATGCTTAGACTG
* * * * *
16488828 GGCATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCATTCAGTCGGTCGGAG
194 GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTAAGCCGGTCGAAG
* * *
16488893 AGGCAGAGTGCGGAAGCCAAGGATCGGCTCGGTCCCCCCTACATGCTACCAATCCTGCTGCTAGT
259 AGGCAGAATGCGGAAGCCAAGGATCGACTCGGTCCCCCCTACATGCTACCAATCCTACTGCTAGT
* * * * **
16488958 CTTGCTGTCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACA
324 CCTGCTGTCGCAACCCTCAGTCCGATCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACA
* * * * * *
16489023 TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCTCTCAGTCGGCCAGA
389 TGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAACGTGCGGGCGCTCAGCCAGCCAGA
* * * * * * ** *
16489088 GAGGTAGAATGCACAAGTTGGGGACCGGCTCGGCCCCACCCTGCGTGCTGTTGATCTTCCTGTCG
454 GAGGCAGAATGCACAAGCTGGGGACCGGCTCAGCCCCACCCTGCGTGCTATCGATCCTCCTACCA
* * * * * *
16489153 CAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACACCGTATGCCTAAGTCAACCCATAAA
519 CAACCCTCAGTCTGGTCCAATCATAGACTGAGAATGAACACCATATGCCCAAGTCAACCCACAAA
*** * * * *
16489218 ATGAGCTTTTGAACACTGAGCCGATTAGAGAGGCATAATGCGTAAGCCAGGGATCAGCTCGGTCC
584 ATGAGAGCTCGAACACTGAGCCGACTAGAGAGGCATAATGCGCAAGCCAGGGATCAGCCCGGTCC
* * ** *
16489283 CCCTCTGCGTGTTGTCGGTCCCACTGCCACAACCCTCGGTTCGGTTGGC
649 CCCTCTGCGTGCTGTCGGTCCCACTACCACAACCCTCAATCCGGTTGGC
* **
16489332 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAACCATGAAATAGGTGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGTGCTCAG
* * * * * * *
16489397 CAGGCTGGAGAGGGAGAATGCGCAAGCTGGGGATCAGCCCGATCCCCCCTGCGTGCT-GTCGATC
66 CCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCTC-ATCCCCCCTGCATGCTACT-GATC
* * *
16489461 CTGTTGCCGTAACCCTCGGTCCGATATGATCTTTA-ACTGGGAATGAACTTTGTATGCTTAGACT
129 CTGCTGCCGTAACCCTCGATCCGATCTGATC-TTAGACTGGGAATGAACTTTGTATGCTTAGACT
* * *
16489525 GGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGTGTACGGGCACTAAGCCGGTCGAA
193 GGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTAAGCCGGTCGAA
* * * ** * * *
16489590 GAGGCAGAATGCGTAAGCCGAGGATCGACTCGGTCCCCCCTACGTGCTGTCGATCCTACTGTTGG
258 GAGGCAGAATGCGGAAGCCAAGGATCGACTCGGTCCCCCCTACATGCTACCAATCCTACTGCTAG
* * *
16489655 TCCTGCTGTCGCAACCCTCAGTTCGATCCAATCTTAGACTGGGAATGAACTTCGTATGCTTAGAC
323 TCCTGCTGTCGCAACCCTCAGTCCGATCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGAC
* *
16489720 ATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAACGTGC-GGCGCTCAGCCAGTCGG
388 ATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAACGTGCGGGCGCTCAGCCAGCCAG
* * * *
16489784 AGAGGCAGAATGCACAAGCTGGGGATCGGC-CTAGTCCC-CCTTGCGTGCTATCGATCCTGCTAC
453 AGAGGCAGAATGCACAAGCTGGGGACCGGCTC-AGCCCCACCCTGCGTGCTATCGATCCTCCTAC
* * * * * *
16489847 CACAACCCTCGGTCTGGTCTAATCATAGACTGAGAATGAACTCTATATGCCCACA-TCAACTCGC
517 CACAACCCTCAGTCTGGTCCAATCATAGACTGAGAATGAACACCATATGCCCA-AGTCAACCCAC
* ** * * * *
16489911 GAAATGAGAGCTCGGGCACTGAGTCGGCTGGAGAGGCATAATGCGCAAGTC-GAGGATC-GACCC
581 AAAATGAGAGCTCGAACACTGAGCCGACTAGAGAGGCATAATGCGCAAGCCAG-GGATCAG-CCC
* * * *
16489974 TGTCCCTCTCTGCGTGCTGTCGGTCCCACTACCACAACCTTCAATCCGGTTGGG
644 GGTCCCCCTCTGCGTGCTGTCGGTCCCACTACCACAACCCTCAATCCGGTTGGC
** *
16490028 GCTTAGACATGGAATGAACTCCCTATGATTAAGCCAACCCATGAAACGGGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGTGCTCAG
** *
16490093 CCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCTCTATCCCCCCTACATGCTACTGATCC
66 CCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCTC-ATCCCCCCTGCATGCTACTGATCC
* * ** *
16490158 TGCTGCCATAACCCTCGATCC-AGTCTGATCTTAGACTGGAAATGAACTTCATATGCTTAGACCG
130 TGCTGCCGTAACCCTCGATCCGA-TCTGATCTTAGACTGGGAATGAACTTTGTATGCTTAGACTG
* * **
16490222 GGGATGAACTCCATATGCCTAAGACAACCTTCGAAACGAGCGT
194 GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
16490265 TAGGGTGCTC
Statistics
Matches: 772, Mismatches: 150, Indels: 24
0.82 0.16 0.03
Matches are distributed among these distances:
695 6 0.01
696 355 0.46
697 45 0.06
698 361 0.47
699 5 0.01
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (697 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCGGGTGCTCAG
CCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGATCGGCTCATCCCCCCTGCATGCTACTGATCCT
GCTGCCGTAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTTTGTATGCTTAGACTGGG
GATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTAAGCCGGTCGAAGAG
GCAGAATGCGGAAGCCAAGGATCGACTCGGTCCCCCCTACATGCTACCAATCCTACTGCTAGTCC
TGCTGTCGCAACCCTCAGTCCGATCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACATG
GAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAACGTGCGGGCGCTCAGCCAGCCAGAGA
GGCAGAATGCACAAGCTGGGGACCGGCTCAGCCCCACCCTGCGTGCTATCGATCCTCCTACCACA
ACCCTCAGTCTGGTCCAATCATAGACTGAGAATGAACACCATATGCCCAAGTCAACCCACAAAAT
GAGAGCTCGAACACTGAGCCGACTAGAGAGGCATAATGCGCAAGCCAGGGATCAGCCCGGTCCCC
CTCTGCGTGCTGTCGGTCCCACTACCACAACCCTCAATCCGGTTGGC
Found at i:16490951 original size:26 final size:26
Alignment explanation
Indices: 16490922--16490974 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16490912 GACTCAAAAT
16490922 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
16490948 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
16490974 C
1 C
16490975 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:16491309 original size:26 final size:26
Alignment explanation
Indices: 16491265--16491317 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16491255 CTGGTCCGAT
*
16491265 CTTAGACTGTGAATAAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
* * *
16491291 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCATATG
16491317 C
1 C
16491318 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:16491498 original size:26 final size:26
Alignment explanation
Indices: 16491460--16491512 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16491450 CTGGTCTGAT
16491460 CTTAGACTCGGAAAGAACTCCGTATG
1 CTTAGACTCGGAAAGAACTCCGTATG
*
16491486 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TCGGAAAGAACTCCGTATG
16491512 C
1 C
16491513 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTCGGAAAGAACTCCGTATG
Found at i:16491788 original size:159 final size:157
Alignment explanation
Indices: 16491486--16491987 Score: 539
Period size: 159 Copynumber: 3.2 Consensus size: 157
16491476 ACTCCGTATG
* *
16491486 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTATGAAACGAGCGTACGGGCGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTTCGGGCGCTCAAC
* ** * * * * *
16491551 CGGCCAAAGAGGCAGAATGCATAAGTCAGGGACCGTCTCGATCCCCCTCTACGTGCTGTCGATCT
66 CGGCCAGAGAGGCAGAATGCGCAAGTGA-GGATCGACCCG-TCCCCCTCTACGTGCTGTCGATCC
* * * * *
16491616 TACTGCTGCAACCCTTGGTCTGATCAGAT
129 TGCTACCGTAACCCTCGGTCTGATCAGAT
* * * *
16491645 CTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGCGTTGAA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTTCGGGCGCTCAA
*
16491709 CCGGCCAGAGAGGCATAATGCGCAAGCTGAGGATCGACCCAGTCCCCCTCTACGTGCTGTCGATC
65 CCGGCCAGAGAGGCAGAATGCGCAAG-TGAGGATCGACCC-GTCCCCCTCTACGTGCTGTCGATC
* * *
16491774 CTGCTACCATAACCCTCGGTCTGA-CTGGGT
128 CTGCTACCGTAACCCTCGGTCTGATC-AGAT
* * * * * * *
16491804 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAACCATGAAATGGGCATGT-GGGAGCTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGT-TCGGGCGCTCAA
* * * *
16491868 TCGGCCAGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTGCCCC-CTACATGCTGT-GATC
65 CCGGCCAGAGAGGCAGAATGCGCAAGT-GAGGATCGACCC-GTCCCCCTCTACGTGCTGTCGATC
*
16491931 CTGCTACCGTAACCCTCGGTCTGATCCGAT
128 CTGCTACCGTAACCCTCGGTCTGATCAGAT
* *
16491961 CTTAGAC-TAGGCATGAACTCTGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
16491988 TTAGACTGGG
Statistics
Matches: 288, Mismatches: 46, Indels: 20
0.81 0.13 0.06
Matches are distributed among these distances:
156 1 0.00
157 51 0.18
158 14 0.05
159 217 0.75
160 5 0.02
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTTCGGGCGCTCAAC
CGGCCAGAGAGGCAGAATGCGCAAGTGAGGATCGACCCGTCCCCCTCTACGTGCTGTCGATCCTG
CTACCGTAACCCTCGGTCTGATCAGAT
Found at i:16491990 original size:26 final size:26
Alignment explanation
Indices: 16491961--16492013 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16491951 CTGATCCGAT
16491961 CTTAGACTAGGCATGAACTCTGTATG
1 CTTAGACTAGGCATGAACTCTGTATG
* *
16491987 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTAGGCATGAACTCTGTATG
16492013 C
1 C
16492014 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGCATGAACTCTGTATG
Found at i:16492068 original size:13 final size:13
Alignment explanation
Indices: 16492050--16492076 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
16492040 CGGGCATTAA
16492050 GCCGATCAGAGAG
1 GCCGATCAGAGAG
16492063 GCCGATCAGAGAG
1 GCCGATCAGAGAG
16492076 G
1 G
16492077 TAGAATGTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.22, G:0.41, T:0.07
Consensus pattern (13 bp):
GCCGATCAGAGAG
Found at i:16492209 original size:26 final size:27
Alignment explanation
Indices: 16492170--16492227 Score: 75
Period size: 26 Copynumber: 2.2 Consensus size: 27
16492160 CCGGTCTGAT
* *
16492170 CTTAGACTGCGAATTAACTCCTTATG-
1 CTTAGACTGCGAATGAACTCCATATGC
16492196 CTTAGACATG-GAATGAACTCCATATGC
1 CTTAGAC-TGCGAATGAACTCCATATGC
16492223 CTTAG
1 CTTAG
16492228 CCAACCCATG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
26 21 0.75
27 7 0.25
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.31
Consensus pattern (27 bp):
CTTAGACTGCGAATGAACTCCATATGC
Found at i:16492476 original size:709 final size:692
Alignment explanation
Indices: 16490948--16492692 Score: 1850
Period size: 709 Copynumber: 2.5 Consensus size: 692
16490938 ACTCCGTATG
* * ** *
16490948 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCCCGAAACGAGCGTGT-GGGCACTCA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT-TCGGGCGTTGA
* * * * ** * * *
16491011 GTCGACCGGAGAGGCAGAATGCGAAAGCCAGGGATCAGCTCGATCCCCTTCTGTGTGCTGTCAGG
64 GCCGACCGAAGAGGCATAATGCGCAAGCTGGGGATCAGCTCGGTCCCC-TCTGCGTGCTGTC-GA
* *
16491076 CCCAT--TGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCCAAG
127 TCC-TGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
* * * * **
16491139 CCAACCCACGAAATGGACGTGCGGGCGCTCAGTCGATCGGAGAGACAGAATGCTTAAGCCGGGGA
191 CCAACCCACGAAATGGACATGCGGGAGCTCAGTCGGTC-GAGAGGCAGAATGCACAAGCCGGGGA
* * * * * *
16491204 TCGACTCGATCCCCCCTGGATGCTATCGATCCTACTGTCGCAACCCTCGATCTGGTCCGATCTTA
255 TCGACCCGGT-CCCCCTGCATGCTATCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTA
* **
16491269 GACTGTGAATAAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGA
319 GACTG-GAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGA
* * *** * *
16491334 AACGAACGTACGGGTGCTCAGTCAATCGGAGAGGCAGAATGCGTAAGTTGAGGATCGGCCTGGTC
383 AACGAACGTACGGGTGCTCAGCCAATCAGAGAGGCAGAATGCGTAAACCGAGGATCGACCTGATC
* ** * * *
16491399 CCTCCTGCATGTTGCGATCCTACTACTGGTCTTGTTGTCGTAACCCTTGGTCTGGTCTGATCTTA
448 CCTCCTG-ATGTTGCGATCCTACTACTGGTCTTGCTACCGTAACCCTCGATCCGGTCTGATCTTA
* *
16491464 GACTCGGAAAGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTATGA
512 GACTCGGAAAGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGA
* * * * *
16491529 AACGAGCGTACGGGCGCTCAACCGGCCAAAGAGGCAGAATGCATAAGTCAGGGACCGTCTCGATC
577 AACGAGCGTACGGGCGCTCAACCGACCAAAGAGGCAGAATGCATAAGCCAAGGACCGACCCGATC
* * * * *
16491594 CCCCTCTACGTGCTGTCGATCTTACTGCTGCAACCCTTGGTCTGATCAGAT
642 CCCCTATACGCGCTGTCGATCCTACTACTGCAACCCTCGGTCTGATCAGAT
* * *
16491645 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGCGTTGAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCGTTGAGC
* * * * *
16491710 CGGCC-AGAGAGGCATAATGCGCAAGCTGAGGATC-GACCCAGTCCCCCTCTACGTGCTGTCGAT
66 CGACCGA-AGAGGCATAATGCGCAAGCTGGGGATCAG-CTCGGT-CCCCTCTGCGTGCTGTCGAT
* * * *
16491773 CCTGCTACCATAACCCTCGGTCTGACTGGGTCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
128 CCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
* * * * * * *
16491838 AAACCATGAAATGGGCATGTGGGAGCTCAGTCGGCCAGAGAGGCAGAATGCGCAAGTCGGGGATC
193 AACCCACGAAATGGACATGCGGGAGCTCAGTCGGTC-GAGAGGCAGAATGCACAAGCCGGGGATC
* * * * *
16491903 GACCCGGTGCCCCCTACATGCTGT-GATCCTGCTACCGTAACCCTCGGTCTGATCCGATCTTAGA
257 GACCCGGT-CCCCCTGCATGCTATCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGA
* * * *
16491967 CTAGGCATGAACTCTGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCTATGAAA
321 CT-GGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * * *
16492032 CGAGCGTGCGGGCATTAAGCCGATCAGAGAGGCCGATCAGAGAGGTAGAATGTGTAAACCGAGGA
385 CGAACGTACGGG---T--G-C--TC----A-GCCAATCAGAGAGGCAGAATGCGTAAACCGAGGA
* ** * *
16492097 TCGACC-GAATCCC-CCTTG-TGTTCTGTCTATCCTGTTGCTAGT-TCTGCTACCGTAACCCTCG
437 TCGACCTG-ATCCCTCC-TGATG-T-TG-CGATCCTACTACTGGTCT-TGCTACCGTAACCCTCG
** *
16492158 ATCCGGTCTGATCTTAGACT-GCGAATTAACTCCTTATGCTTAGACATGGAATGAACTCCATATG
496 ATCCGGTCTGATCTTAGACTCG-GAAAGAACTCCGTATGCTTAGACATGGAATGAACTCCATATG
* * * * ** * *
16492222 CCTTAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCTACCGGAGAGGCAGAATGTATGAGC
560 CCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAACCGACCAAAGAGGCAGAATGCATAAGC
*
16492287 CAAGGACCGACCCGATCCCCC-ATACGCGCTGTCGATCCTGCTAAC-GCAACCCTCGGTCTGATC
625 CAAGGACCGACCCGATCCCCCTATACGCGCTGTCGATCCTACT-ACTGCAACCCTCGGTCTGATC
*
16492350 TGAT
689 AGAT
* * *
16492354 CTTAGGCTGGGAATGAACTCCGTATTCCTAAGTCAACCCACGAAACGAGCGTTCGGGTGTTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCGTTGAGC
* * *
16492419 CAACCGAAAAGGCATAATGCGCAAGCTGGGGATCAGCTCGGTCCCTCTCTGCGTGCTG-CCAGTC
66 CGACCGAAGAGGCATAATGCGCAAGCTGGGGATCAGCTCGGTCCC-CTCTGCGTGCTGTCGA-TC
*
16492483 CCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAA-CCT
129 CTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC-
* * * * * *
16492547 AACCCACAAAACGGACATGCGGGTGCTCAGTCGGTTCGTGAGGTAGAATGCACAAGCCGAGGATC
193 AACCCACGAAATGGACATGCGGGAGCTCAGTCGG-TCGAGAGGCAGAATGCACAAGCCGGGGATC
* * * * * *
16492612 AACCCGGTCCCCCTTGCGTGCTTTCGATCCTGCTGCTGCAACCCTCAGT-TCGGTTCGATCTTAG
257 GACCCGGTCCCCC-TGCATGCTATCGATCCTGCTGCCGCAACCCTCGGTCT-GGTCCGATCTTAG
16492676 ACTGGGAATGAACTCTG
320 ACT-GGAATGAACTCTG
16492693 CATCAACCCA
Statistics
Matches: 858, Mismatches: 152, Indels: 63
0.80 0.14 0.06
Matches are distributed among these distances:
695 1 0.00
696 106 0.12
697 218 0.25
698 4 0.00
699 1 0.00
701 1 0.00
702 1 0.00
704 2 0.00
707 2 0.00
708 17 0.02
709 303 0.35
710 202 0.24
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (692 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCGTTGAGC
CGACCGAAGAGGCATAATGCGCAAGCTGGGGATCAGCTCGGTCCCCTCTGCGTGCTGTCGATCCT
GCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
CCACGAAATGGACATGCGGGAGCTCAGTCGGTCGAGAGGCAGAATGCACAAGCCGGGGATCGACC
CGGTCCCCCTGCATGCTATCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGA
ATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACG
TACGGGTGCTCAGCCAATCAGAGAGGCAGAATGCGTAAACCGAGGATCGACCTGATCCCTCCTGA
TGTTGCGATCCTACTACTGGTCTTGCTACCGTAACCCTCGATCCGGTCTGATCTTAGACTCGGAA
AGAACTCCGTATGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGT
ACGGGCGCTCAACCGACCAAAGAGGCAGAATGCATAAGCCAAGGACCGACCCGATCCCCCTATAC
GCGCTGTCGATCCTACTACTGCAACCCTCGGTCTGATCAGAT
Found at i:16493059 original size:26 final size:26
Alignment explanation
Indices: 16493030--16493082 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16493020 CCGGTCTGAT
*
16493030 CTTAGACTGGGAATGAACTCGGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
16493056 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16493082 C
1 C
16493083 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16494121 original size:26 final size:26
Alignment explanation
Indices: 16494092--16494144 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16494082 CTGATCCGAT
16494092 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
*
16494118 CTTAGACTAGGGATGCACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
16494144 C
1 C
16494145 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:16494297 original size:196 final size:197
Alignment explanation
Indices: 16493999--16494354 Score: 500
Period size: 196 Copynumber: 1.8 Consensus size: 197
16493989 GGTGCTCAAC
* * * *
16493999 CGATCAGAGAGGTAGAATGCATAAGTCGAGGATCAACTCGGTCCCCCATGCGTGTTGTCGATCCA
1 CGATCAGAGAGGAAGAATGCATAAGCCGAGGATCAACTCAGTCCCCCATGCGTGCTGTCGATCCA
* * *
16494064 ACTACCGCAACCCTCAGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGG
66 ACTACCACAACCATCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGG
*
16494129 GATGCACTCCGTATGCCTAAGTCAACCCATAAAACGAGCGTGTGGATGCTCAACCGATCGGATAG
131 GATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCGTGTGGATGCTCAACCGATCGGATAG
16494194 GT
196 GT
* * * *
16494196 CGATCGGAGAGGAAGAATGCATAAGCCGGGGATCAGA-TCAGTCCCCC-TGTGTGCTGTCGATCT
1 CGATCAGAGAGGAAGAATGCATAAGCCGAGGATCA-ACTCAGTCCCCCATGCGTGCTGTCGATCC
** * * * * * *
16494259 TGCTGCCATAACCATCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATTCTTAGACTGG
65 AACTACCACAACCATCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAG
*
16494324 GGATGAACTCCGTATGCCTAAGTCAGCCCAT
130 GGATGAACTCCGTATGCCTAAGTCAACCCAT
16494355 GAAATGAACG
Statistics
Matches: 137, Mismatches: 21, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
196 96 0.70
197 40 0.29
198 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.26, T:0.23
Consensus pattern (197 bp):
CGATCAGAGAGGAAGAATGCATAAGCCGAGGATCAACTCAGTCCCCCATGCGTGCTGTCGATCCA
ACTACCACAACCATCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGG
GATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCGTGTGGATGCTCAACCGATCGGATAG
GT
Found at i:16494316 original size:26 final size:26
Alignment explanation
Indices: 16494287--16494338 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
16494277 TCCGGTCTGA
16494287 TCTTAGACTGGGAATGAACTCCGTAT
1 TCTTAGACTGGGAATGAACTCCGTAT
*
16494313 TCTTAGACTGGGGATGAACTCCGTAT
1 TCTTAGACTGGGAATGAACTCCGTAT
16494339 GCCTAAGTCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (26 bp):
TCTTAGACTGGGAATGAACTCCGTAT
Found at i:16494705 original size:26 final size:26
Alignment explanation
Indices: 16494667--16494719 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16494657 TGGGTCCGAT
16494667 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16494693 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
16494719 C
1 C
16494720 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16494993 original size:159 final size:157
Alignment explanation
Indices: 16494692--16495139 Score: 458
Period size: 159 Copynumber: 2.8 Consensus size: 157
16494682 AACTCCATAT
* * * *
16494692 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCATTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGAGCATT-AG
* * * * * * *
16494757 CCGGTCGGAGAGGCAGAATGCACAAGCC-AGGGATCAACCCTGTCCCCCCTTACATGCTGTCGAT
65 CCAGTCGAAGAGGCAGAATGCGCAAGCCGA-GGATCGACCCGGTCCCCTC-TACGTGCTGTCGAT
** * *
16494821 CCTGCTACCACAACCCTCAGTCTGGTCT-GA
128 CCCACTACCACAACCCTCAATCT-GACTGGA
* *
16494851 TCTTAGAC-TGGAAATGAACTCTGTATGCCTAA-CTCAACCCATGAAACGAGCATGCGAGCATTA
1 GCTTAGACATGG-AATGAACTCCGTATGCCTAAGC-CAACCCATGAAACGAGCATGCGAGCATT-
* * * *
16494914 AGCCAGTCGAAGAGGCATAATGCGTAAGCCGAGGATCGGCCCGGTCCCTCTCTGCGTGCTGTCGA
63 AGCCAGTCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCC-CTCTACGTGCTGTCGA
*** *
16494979 TCCCACTGGGACAACCCTCAATCTGACTGGG
127 TCCCACTACCACAACCCTCAATCTGACTGGA
* * * *
16495010 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC-AGGCGTACGGGTGC-TT
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA-GC--ATGCGAGCATT
** * *
16495073 AGCCAACCGCAGAGGCAGAATGCGCAAGCCGAGGACCGACCCGGTCCCCTCTACGTGCTGTCGAT
63 AGCCAGTCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCTCTACGTGCTGTCGAT
16495138 CC
128 CC
16495140 TGCTACCGTA
Statistics
Matches: 239, Mismatches: 40, Indels: 21
0.80 0.13 0.07
Matches are distributed among these distances:
158 26 0.11
159 199 0.83
160 9 0.04
161 5 0.02
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGAGCATTAGC
CAGTCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCTCTACGTGCTGTCGATCCC
ACTACCACAACCCTCAATCTGACTGGA
Found at i:16495157 original size:21 final size:21
Alignment explanation
Indices: 16495133--16495180 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
16495123 CTACGTGCTG
* *
16495133 TCGATCCTGCTACCGTAACCC
1 TCGATCCTACTACCGCAACCC
*
16495154 TCGATCCTACTATCGCAACCC
1 TCGATCCTACTACCGCAACCC
16495175 TCGATC
1 TCGATC
16495181 TGGTCTGATC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.21, C:0.42, G:0.12, T:0.25
Consensus pattern (21 bp):
TCGATCCTACTACCGCAACCC
Found at i:16498060 original size:159 final size:159
Alignment explanation
Indices: 16497765--16498450 Score: 658
Period size: 158 Copynumber: 4.3 Consensus size: 159
16497755 CCTCTGCCGG
** *
16497765 TCCTACTGCCACAACCCTCGGTCCGGCTA-GGGCTTAGACATGGAATGAACTTCGTATGCCTAAG
1 TCCTACTGCCACAACCCTCGGTCCGGCTACGATCTTAGACATGGAATGAACTCCGTATGCCTAAG
* * * * * * *
16497829 CCAACCCATGAAATGAGCGTGCGGGTGCTCAGTCGGTCGGAGAGGCCGAATGCGCAAGCTGGGGA
66 CCAACCCACGAAATGAGCGTACGGGTGCTCAGTCGGTCGGAAAGGCAGAATGCACAAGCCGAGGA
* * * *
16497894 TCAGCCCGGTCACCCTCTACATGCTGTTGA
131 TCGGCCCGGTC-CCCCCTACGTGCTGTCGA
* * *
16497924 TCCTGCTGCCACAACCCTCGGTCCGGCTACGA-CTTGGACATGGAGTGAACTCCGTATGCCTAAG
1 TCCTACTGCCACAACCCTCGGTCCGGCTACGATCTTAGACATGGAATGAACTCCGTATGCCTAAG
* * ** * * *
16497988 CCAACCCATGAAATGAACGTGTGGGTGCTCAGTTGGTCGGAAAGGTAGAATGCATAAGCCGAGGA
66 CCAACCCACGAAATGAGCGTACGGGTGCTCAGTCGGTCGGAAAGGCAGAATGCACAAGCCGAGGA
* * *
16498053 TTGGCCCGGTCCCCCCTGCGTGCTG-CTAA
131 TCGGCCCGGTCCCCCCTACGTGCTGTC-GA
* * * * * *
16498082 TACTGCTACCGCAACTCTCAGAT-CGG-T-CTGATCTTAGAC-TGGGAATGAACTCCGTATGCCT
1 TCCTACTGCCACAACCCTC-GGTCCGGCTAC-GATCTTAGACAT-GGAATGAACTCCGTATGCCT
* * * * * * * * * *
16498143 AAGACAACCCACGAAATGAGCGTACAGGCGCTGAGCCAG-CCGAAGAGACATAATG-AGCAAGTC
63 AAGCCAACCCACGAAATGAGCGTACGGGTGCTCAGTCGGTCGGAA-AGGCAGAATGCA-CAAGCC
* * *
16498206 GAGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGG
126 GAGGATCGGCCCGGTCCCCC-CTACGTGCTGTCGA
* * * *
16498241 TCCCA-TGCCACAACCCTCGGTCCGGCTA-GAGCCTAGACATGGAATGAACTCCCTATGCCTAAG
1 TCCTACTGCCACAACCCTCGGTCCGGCTACGATCTTAGACATGGAATGAACTCCGTATGCCTAAG
* * * * **
16498304 CCAACCCACGAAACGGGCGTACGGGTGCTCAATCGGTCGGAAAGGCAAAATGCGTAAGCCGAGGA
66 CCAACCCACGAAATGAGCGTACGGGTGCTCAGTCGGTCGGAAAGGCAGAATGCACAAGCCGAGGA
* *
16498369 TTGGCCTGGTCCCCCCTACGTGCTGTCGA
131 TCGGCCCGGTCCCCCCTACGTGCTGTCGA
** * *
16498398 TCCTACTGCCGTAACCCTCGGTCCGG-TTCGATCTTAGACAGGGAATGAACTCC
1 TCCTACTGCCACAACCCTCGGTCCGGCTACGATCTTAGACATGGAATGAACTCC
16498451 ATGTGCTTAG
Statistics
Matches: 422, Mismatches: 87, Indels: 37
0.77 0.16 0.07
Matches are distributed among these distances:
156 1 0.00
157 28 0.07
158 250 0.59
159 141 0.33
160 2 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (159 bp):
TCCTACTGCCACAACCCTCGGTCCGGCTACGATCTTAGACATGGAATGAACTCCGTATGCCTAAG
CCAACCCACGAAATGAGCGTACGGGTGCTCAGTCGGTCGGAAAGGCAGAATGCACAAGCCGAGGA
TCGGCCCGGTCCCCCCTACGTGCTGTCGA
Found at i:16498433 original size:316 final size:315
Alignment explanation
Indices: 16497765--16498450 Score: 772
Period size: 316 Copynumber: 2.2 Consensus size: 315
16497755 CCTCTGCCGG
* * ** *
16497765 TCCTACTGCCACAACCCTCGGTCCGGCTAGGGCTTAGACAT-GGAATGAACTTCGTATGCCTAAG
1 TCCTACTGCCGCAACCCTCGGTCCGG-TCGATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAG
* * * * * * * * * * * * *
16497829 CCAACCCATGAAATGAGCGTGCGGGTGCTCAGTCGGTCGGAGAGGCCGAATGCGCAAGCTGGGGA
64 ACAACCCACGAAATGAGCGTACAGGCGCTCAGCCAGCCGAAGAGACAGAATGAGCAAGCTGAGGA
* * *
16497894 TCAGCCCGGTCACCCTCTACATGCTGTTGATCCTGCTGCCACAACCCTCGGTCCGGCTACGACTT
129 TCAGCCCGATCACCCTCTACATGCTGTCGATCC-GCTGCCACAACCCTCGGTCCGGCTACGACCT
* * * * * ** * *
16497959 GGACATGGAGTGAACTCCGTATGCCTAAGCCAACCCATGAAATGAACGTGTGGGTGCTCAGTTGG
193 AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAACGTACGGGTGCTCAATCGG
* * *
16498024 TCGGAAAGGTAGAATGCATAAGCCGAGGATTGGCCCGGTCCCCCCTGCGTGCTGCTAA
258 TCGGAAAGGCAAAATGCATAAGCCGAGGATTGGCCCGGTCCCCCCTACGTGCTGCTAA
* * * * *
16498082 TACTGCTACCGCAACTCTCAGAT-CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
1 TCCTACTGCCGCAACCCTC-GGTCCGGTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* *
16498146 ACAACCCACGAAATGAGCGTACAGGCGCTGAGCCAGCCGAAGAGACATAATGAGCAAG-TCGAGG
64 ACAACCCACGAAATGAGCGTACAGGCGCTCAGCCAGCCGAAGAGACAGAATGAGCAAGCT-GAGG
* * * * *
16498210 ATCGGCCCGATCCCCCTCTGCGTGCTGTCGGTCC-CATGCCACAACCCTCGGTCCGGCTA-GAGC
128 ATCAGCCCGATCACCCTCTACATGCTGTCGATCCGC-TGCCACAACCCTCGGTCCGGCTACGA-C
**
16498273 CTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGTGCTCAATC
191 CTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAACGTACGGGTGCTCAATC
* * *
16498338 GGTCGGAAAGGCAAAATGCGTAAGCCGAGGATTGGCCTGGTCCCCCCTACGTGCTG-TCGA
256 GGTCGGAAAGGCAAAATGCATAAGCCGAGGATTGGCCCGGTCCCCCCTACGTGCTGCT-AA
* *
16498398 TCCTACTGCCGTAACCCTCGGTCCGGTTCGATCTTAGACAGGGAATGAACTCC
1 TCCTACTGCCGCAACCCTCGGTCCGG-TCGATCTTAGACTGGGAATGAACTCC
16498451 ATGTGCTTAG
Statistics
Matches: 303, Mismatches: 57, Indels: 19
0.80 0.15 0.05
Matches are distributed among these distances:
315 6 0.02
316 172 0.57
317 123 0.41
318 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (315 bp):
TCCTACTGCCGCAACCCTCGGTCCGGTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGAC
AACCCACGAAATGAGCGTACAGGCGCTCAGCCAGCCGAAGAGACAGAATGAGCAAGCTGAGGATC
AGCCCGATCACCCTCTACATGCTGTCGATCCGCTGCCACAACCCTCGGTCCGGCTACGACCTAGA
CATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAACGTACGGGTGCTCAATCGGTCG
GAAAGGCAAAATGCATAAGCCGAGGATTGGCCCGGTCCCCCCTACGTGCTGCTAA
Found at i:16499192 original size:26 final size:26
Alignment explanation
Indices: 16499150--16499201 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16499140 GGCTCAAACT
16499150 GTTAGACTGGGAATGAACTCCGTATG
1 GTTAGACTGGGAATGAACTCCGTATG
*
16499176 GTTAGACAT-GGAGTGAACTCCGTATG
1 GTTAGAC-TGGGAATGAACTCCGTATG
16499202 CCTAAGCCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (26 bp):
GTTAGACTGGGAATGAACTCCGTATG
Found at i:16499375 original size:26 final size:26
Alignment explanation
Indices: 16499334--16499386 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16499324 CCGGTCCGAT
*
16499334 CTTAGACTGAGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
16499360 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
16499386 C
1 C
16499387 CTATGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:16500427 original size:26 final size:26
Alignment explanation
Indices: 16500398--16500450 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16500388 CCAGTCTGAT
*
16500398 CTTAGACTAGGAATGATCTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
16500424 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
16500450 C
1 C
16500451 CTAGGTCAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:16500837 original size:158 final size:158
Alignment explanation
Indices: 16500536--16500896 Score: 400
Period size: 158 Copynumber: 2.3 Consensus size: 158
16500526 GCTGACAATT
* * * * ** ** *
16500536 GGCCTGGTCCCCCTTGCGTGTTGCCGATCCTACTGCCGTAACCCTCGGTCCGATCTGATTTTAGA
1 GGCCTGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCAATCCGATCTGATATTAGA
* * * * *
16500601 CTAGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCA
66 CTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTAAGCCGACCA
* *
16500666 AAAAGGTAGAATGCGCAAGCCGAGGACC
131 AAAAGGCAGAATGCGCAAGCCAAGGACC
* * * *
16500694 GGTCTGGTCCCCCCTACGTGCTGTCGATCTTGCTGCCACAACCCTCAATCCGGTCTGATATTAGA
1 GGCCTGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCAATCCGATCTGATATTAGA
* * * ** *
16500759 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTTTGGGCACTAAGCCGACCG
66 CTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTAAGCCGACCA
* * * **
16500824 GAGAGGCATAATGCGCAAGCCAAGGATG
131 AAAAGGCAGAATGCGCAAGCCAAGGACC
* * *
16500852 GGCCTCG-CCCCCTCTGCGTGCTGTCGGTCCCGCTGCCACAACCCT
1 GGCCTGGTCCCCC-CTGCGTGCTGTCGATCCTGCTGCCACAACCCT
16500897 TGGTCTGGCT
Statistics
Matches: 165, Mismatches: 37, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
157 5 0.03
158 160 0.97
ACGTcount: A:0.22, C:0.32, G:0.26, T:0.20
Consensus pattern (158 bp):
GGCCTGGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCACAACCCTCAATCCGATCTGATATTAGA
CTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTAAGCCGACCA
AAAAGGCAGAATGCGCAAGCCAAGGACC
Found at i:16501120 original size:26 final size:26
Alignment explanation
Indices: 16501070--16501122 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16501060 CTGATCCAAT
* *
16501070 CTTAGATTGGGAATGAACTATGTATG
1 CTTAGACTGGGAATGAACTACGTATG
* *
16501096 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
16501122 C
1 C
16501123 CTACGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:16501224 original size:21 final size:21
Alignment explanation
Indices: 16501198--16501238 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
16501188 GGGGATTCGT
* *
16501198 CCGGTCCCTCTCTGCGTGCTA
1 CCGGTCCCCCTCTGCATGCTA
16501219 CCGGTCCCCCTCTGCATGCT
1 CCGGTCCCCCTCTGCATGCT
16501239 GCAGATCCTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.05, C:0.46, G:0.22, T:0.27
Consensus pattern (21 bp):
CCGGTCCCCCTCTGCATGCTA
Found at i:16501828 original size:26 final size:26
Alignment explanation
Indices: 16501787--16501839 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16501777 TCGATCTGAT
16501787 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16501813 CTTAGACTAGGG-ATGAACTCTGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
16501839 C
1 C
16501840 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16501828 original size:184 final size:182
Alignment explanation
Indices: 16501541--16501934 Score: 510
Period size: 184 Copynumber: 2.1 Consensus size: 182
16501531 CGTAAGCCGG
* * * * * *
16501541 GGATCGACCCAGTCCCCCTGTGTGCTGTCGATCCTCCTGCCGTAACTCTCGTTTCGGTTCGATCA
1 GGATCGGCCCGGTCCCCCTGCGTGCTGTCGATCCTACTGCCGTAACCCTCGTTTCGATTCGATCA
* *
16501606 GGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACG
66 GGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACG
* *
16501671 AAACGAGCGTACGGGCGTTCAA-CTAGCCGAAGAGGCAGAATGCACAAG-TCGA
131 AAACGAGCGTACGGGCGCTCAATC-AACCGAAGAGGCAGAATGCACAAGCTC-A
* *
16501723 GGATTGGCCCGGTCCCTCCTGCGTGCTGTCGATCCTACTGTCGTAACCCTCAG-TTCGA-TCTGA
1 GGATCGGCCCGGTCCC-CCTGCGTGCTGTCGATCCTACTGCCGTAACCCTC-GTTTCGATTC-GA
*
16501786 TCTTA-GACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCTGTATGCCTAAGTCAAC
63 TC--AGGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAAC
* * *
16501850 CCATGAAACGAGCGTGCGGGCGCTCAATCAACCGAAGAGGCAGAATGCATAAGCTCA
126 CCACGAAACGAGCGTACGGGCGCTCAATCAACCGAAGAGGCAGAATGCACAAGCTCA
* *
16501907 GGATCGGCTCGATCCCCCTCTGCGTGCT
1 GGATCGGCCCGGT-CCCC-CTGCGTGCT
16501935 ATCGGTCTCC
Statistics
Matches: 184, Mismatches: 19, Indels: 15
0.84 0.09 0.07
Matches are distributed among these distances:
182 15 0.08
183 38 0.21
184 115 0.62
185 16 0.09
ACGTcount: A:0.23, C:0.28, G:0.26, T:0.23
Consensus pattern (182 bp):
GGATCGGCCCGGTCCCCCTGCGTGCTGTCGATCCTACTGCCGTAACCCTCGTTTCGATTCGATCA
GGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACG
AAACGAGCGTACGGGCGCTCAATCAACCGAAGAGGCAGAATGCACAAGCTCA
Found at i:16502899 original size:159 final size:158
Alignment explanation
Indices: 16502545--16502902 Score: 391
Period size: 158 Copynumber: 2.3 Consensus size: 158
16502535 ACTCCATATG
* * *
16502545 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAGCCCATGAAACGAGTGTGCAGGCACCCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACCCAGC
* * * * **
16502610 TGACTGGAGAGGCAGAATGCGTAACTCGAGGATCGACCCAGTCCCCCCTGTGTGCTGTTGATCTT
66 TGACCGGAGAGGCAGAATGCGCAACTCGAGGATCGACCCAGTCCCCCCTATGTGCTGCTGATCCG
* * *
16502675 GTTGCCGCAACCCTCAGTCTGGCCCGAT
131 GCTGCCACAACCCTCAGTCAGGCCCGAT
* * ***
16502703 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCATTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACCCAG
* * * *
16502767 CT-AGCCGGAGAGGCATAATGCGCAAGTCGGGGATCGACCCAGT-CCCCCTATGCATGCTGCTGG
65 CTGA-CCGGAGAGGCAGAATGCGCAACTCGAGGATCGACCCAGTCCCCCCTATG--TGCTGCTGA
**** *
16502830 TCCGGCTGCCACAACCCTCAGTCCAGTTGGGGT
127 TCCGGCTGCCACAACCCTCAGT-CAGGCCCGAT
* *
16502863 -TTAGACATGGAATGAACTCCCTATGCCTAGGCCAACCCAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
16502903 AAAATAGGCA
Statistics
Matches: 165, Mismatches: 29, Indels: 11
0.80 0.14 0.05
Matches are distributed among these distances:
157 10 0.06
158 90 0.55
159 60 0.36
160 5 0.03
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACCCAGC
TGACCGGAGAGGCAGAATGCGCAACTCGAGGATCGACCCAGTCCCCCCTATGTGCTGCTGATCCG
GCTGCCACAACCCTCAGTCAGGCCCGAT
Found at i:16503049 original size:26 final size:26
Alignment explanation
Indices: 16503020--16503075 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
16503010 CCAGTTCGAT
16503020 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
**
16503046 CTTAGACTGGGGCTGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
16503072 CTTA
1 CTTA
16503076 AGTCAACTCA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 26 0.96
27 1 0.04
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:16504287 original size:184 final size:183
Alignment explanation
Indices: 16504005--16504453 Score: 442
Period size: 184 Copynumber: 2.4 Consensus size: 183
16503995 GGATCGGTTT
* * * * * * * *
16504005 GATCCCACCTGCGTGCTACCGATCTTGCTGTCGTAACCCTCGGTCTGATCCGGTCTTAGACTGGG
1 GATCCCCCCGGCGTGCTATCGATCCTGCTGTCGCAACCCTC-GTCCGATCTGATCTTAGACTGGG
* * * * **
16504070 AATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTACACCTAAG-TCAACCCACGAAATGAG
65 AATGAACTCCGTATGCTCAGACTGCGAATGAACTCCGTACACCTAAGCT-AACCCACGAAACAAG
* * * * *
16504134 CGTCCAAGCGCTT-AG-TCGG-CTGGAGAGGTAGAATGCGTAAGTC-GAGGATCAACCC
129 CGTACAAGCG-TTCAGCT-GGTC-GGAGAGGCAGAATGCATAAGCCAG-GGACCAACCC
* * *
16504189 GATCCCCTCGGCGTGCTATCGATCCTGCTGTCGCAACCTTCAGTCCGGTCTGATCTTAGACTGGG
1 GATCCCCCCGGCGTGCTATCGATCCTGCTGTCGCAACCCTC-GTCCGATCTGATCTTAGACTGGG
* **
16504254 AATGAACTCCGTATGCTCAGACAT-CGAATGAACTCTGTATGCCTAAGCTAACCCACGAAACAAG
65 AATGAACTCCGTATGCTCAGAC-TGCGAATGAACTCCGTACACCTAAGCTAACCCACGAAACAAG
** ***
16504318 CGTACGGGCGTTCAGCTGGTCGGAGAGGCAGAATGCATAAGCCAGGGACCGGTCC
129 CGTACAAGCGTTCAGCTGGTCGGAGAGGCAGAATGCATAAGCCAGGGACCAACCC
* * * * * * *
16504373 GATCCCCCCTGTGTGCTGTCGATCCTGCTATCGCAACCCTCGATCCTATTTGATCTTAGACTTGG
1 GATCCCCCCGGCGTGCTATCGATCCTGCTGTCGCAACCCTCG-TCCGATCTGATCTTAGACTGGG
16504438 AATGAACTCCGTATGC
65 AATGAACTCCGTATGC
16504454 CTAAGTCAAC
Statistics
Matches: 217, Mismatches: 41, Indels: 14
0.80 0.15 0.05
Matches are distributed among these distances:
183 3 0.01
184 209 0.96
185 5 0.02
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.23
Consensus pattern (183 bp):
GATCCCCCCGGCGTGCTATCGATCCTGCTGTCGCAACCCTCGTCCGATCTGATCTTAGACTGGGA
ATGAACTCCGTATGCTCAGACTGCGAATGAACTCCGTACACCTAAGCTAACCCACGAAACAAGCG
TACAAGCGTTCAGCTGGTCGGAGAGGCAGAATGCATAAGCCAGGGACCAACCC
Found at i:16504982 original size:26 final size:26
Alignment explanation
Indices: 16504953--16505004 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16504943 CCGGTCTGGT
*
16504953 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
16504979 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
16505005 TTGAAGCCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:16506499 original size:158 final size:158
Alignment explanation
Indices: 16506178--16506558 Score: 403
Period size: 158 Copynumber: 2.4 Consensus size: 158
16506168 AACTCCGTAT
*
16506178 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * * *
16506243 CCGATCAGAGAGGCAGAATGCACAAGCTGGGGATCGGCCCGATCCCCCTCTACATGCTGTCGGTC
66 CCGATCAGAGAGGCAGAATGCACAAGCTGGAGATCGACACGATCCCCCTCTACATGCTGCCGATC
* *
16506308 CCGCTGCCACAACCCTCATCCAGCTAGG
131 CCGCTACCACAACCCTCATCCAGCTAGA
* * * * *
16506336 GCTTAGACATGGAATGAACTCCCTATGCCTCAGCCAACCCACGAAATGGGCGTATGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * *
16506401 CCGA-CTAGAGAGGTAGAATGCGCAAG-TCGGAGATCGACACGGTCCCCC-CTACGTGCTGCCGA
66 CCGATC-AGAGAGGCAGAATGCACAAGCT-GGAGATCGACACGATCCCCCTCTACATGCTGCCGA
** * * * * *
16506463 TCTTGCTATCGCAACCCTCAGT-CTGATCCGA
129 TCCCGCTACCACAACCCTCA-TCCAGCT-AGA
* * * * * * *
16506494 TCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAATCCACAAAACGAGCGTGCGGGCGTTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
16506558 G
65 G
16506559 TCAGTCGAAA
Statistics
Matches: 182, Mismatches: 36, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
157 32 0.18
158 150 0.82
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
CCGATCAGAGAGGCAGAATGCACAAGCTGGAGATCGACACGATCCCCCTCTACATGCTGCCGATC
CCGCTACCACAACCCTCATCCAGCTAGA
Found at i:16508040 original size:26 final size:26
Alignment explanation
Indices: 16508004--16508055 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16507994 TCTGGTCTGA
*
16508004 TCTTAGACTGGGAATGAACTCCGTAT
1 TCTTAAACTGGGAATGAACTCCGTAT
* *
16508030 TCTTAAACTGGGGATGAACTTCGTAT
1 TCTTAAACTGGGAATGAACTCCGTAT
16508056 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (26 bp):
TCTTAAACTGGGAATGAACTCCGTAT
Found at i:16509123 original size:26 final size:26
Alignment explanation
Indices: 16509082--16509134 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16509072 TCGGTTCGAT
16509082 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
16509108 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
16509134 C
1 C
16509135 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:16513596 original size:26 final size:26
Alignment explanation
Indices: 16513567--16513619 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16513557 TCGATCCGAT
*
16513567 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
**
16513593 CTTAGACTGGGGCTAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
16513619 C
1 C
16513620 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:16514660 original size:26 final size:26
Alignment explanation
Indices: 16514624--16514676 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16514614 CCGATTCGAT
16514624 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
* *
16514650 CTTATACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
16514676 C
1 C
16514677 CTAAGTCGAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:16514862 original size:26 final size:26
Alignment explanation
Indices: 16514833--16514883 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
16514823 CAGTCCGATC
*
16514833 TTAGACTAGGAATGAACTCCGTATGG
1 TTAGACTAGGAATGAAATCCGTATGG
* *
16514859 TTAGACTTGGAATGAAATCTGTATG
1 TTAGACTAGGAATGAAATCCGTATG
16514884 CCTAAGCCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.12, G:0.25, T:0.31
Consensus pattern (26 bp):
TTAGACTAGGAATGAAATCCGTATGG
Found at i:16515388 original size:26 final size:26
Alignment explanation
Indices: 16515359--16515411 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16515349 CCGGTCTGAT
*
16515359 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16515385 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16515411 C
1 C
16515412 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16516420 original size:26 final size:26
Alignment explanation
Indices: 16516391--16516442 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16516381 CGGTCCAATT
16516391 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
* *
16516417 TTAGACTGGGGATGAACTTCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
16516443 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:16516557 original size:184 final size:184
Alignment explanation
Indices: 16516301--16516649 Score: 502
Period size: 184 Copynumber: 1.9 Consensus size: 184
16516291 CACAGCCGAC
* **
16516301 CGGAGACGCAAAATGCGCAAGCTGGGGACCAACTCGGTCCCCCCTACGTGCTGTTGATCCTACTG
1 CGGAGACGCAAAATGCGCAAGCGGGGGACCAACTCGGTCCCCCCTACGTGCTGCCGATCCTACTG
* * * * *
16516366 CCACAACCCTCGATCCGGTCCAATTTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATG
66 CCACAACCCTCGATCCAGTCCAATCTTAGACTGGGAATGAACTCCATATGCTTAAACTGGCGATG
*
16516431 AACTTCGTATGCCTAAGTCAACCCACAAAACGAGCATGCGGACGCTTAGTCGAT
131 AACTCCGTATGCCTAAGTCAACCCACAAAACGAGCATGCGGACGCTTAGTCGAT
* * * * * *
16516485 CGGAGAGGCAGAATGCGCAAGCCGGGGGATCAGCTCGGT-CCCCCTGCGTGCTGCCGATCCTGCT
1 CGGAGACGCAAAATGCGCAAG-CGGGGGACCAACTCGGTCCCCCCTACGTGCTGCCGATCCTACT
* * * *
16516549 GTCACAACCCTCGGTCCAGTCTAATCTTAGACTGGGAATGAACTCCATATGCTTAAATTGGCGAT
65 GCCACAACCCTCGATCCAGTCCAATCTTAGACTGGGAATGAACTCCATATGCTTAAACTGGCGAT
*
16516614 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
130 GAACTCCGTATGCCTAAGTCAACCCACAAAACGAGC
16516650 GTGCAGACAC
Statistics
Matches: 144, Mismatches: 20, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
184 130 0.90
185 14 0.10
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.21
Consensus pattern (184 bp):
CGGAGACGCAAAATGCGCAAGCGGGGGACCAACTCGGTCCCCCCTACGTGCTGCCGATCCTACTG
CCACAACCCTCGATCCAGTCCAATCTTAGACTGGGAATGAACTCCATATGCTTAAACTGGCGATG
AACTCCGTATGCCTAAGTCAACCCACAAAACGAGCATGCGGACGCTTAGTCGAT
Found at i:16516685 original size:184 final size:185
Alignment explanation
Indices: 16516296--16516692 Score: 494
Period size: 184 Copynumber: 2.2 Consensus size: 185
16516286 GAGCCCACAG
* * * * **
16516296 CCGACCGGAGACGCAAAATGCGCAAG-CTGGGGACCAACTCGGTCCCCCCTACGTGCTGTTGATC
1 CCGACCAGAGAGGCAGAATGCGCAAGCCGGGGGACCAACTCGGTCCCCCCTACGTGCTGCCGATC
* * * *
16516360 CTACTGCCACAACCCTCGATCCGGTCCAATTTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
66 CTACTGCCACAACCCTCGATCCAGTCCAATCTTAGACTGGGAATGAACTCCATATGCTTAAACTG
* * * * * *
16516425 GGGATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCATGCGGACGCTTAG
131 GCGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCATGCAGACACTCAA
* * * * * *
16516480 TCGATCGGAGAGGCAGAATGCGCAAGCCGGGGGATCAGCTCGGT-CCCCCTGCGTGCTGCCGATC
1 CCGACCAGAGAGGCAGAATGCGCAAGCCGGGGGACCAACTCGGTCCCCCCTACGTGCTGCCGATC
* * * * *
16516544 CTGCTGTCACAACCCTCGGTCCAGTCTAATCTTAGACTGGGAATGAACTCCATATGCTTAAATTG
66 CTACTGCCACAACCCTCGATCCAGTCCAATCTTAGACTGGGAATGAACTCCATATGCTTAAACTG
* *
16516609 GCGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGACACTCAA
131 GCGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCATGCAGACACTCAA
*
16516664 CCGACCAGAG-GGACTGAATGCGCAAGCCG
1 CCGACCAGAGAGG-CAGAATGCGCAAGCCG
16516693 AGGATCGAAC
Statistics
Matches: 180, Mismatches: 31, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
183 2 0.01
184 164 0.91
185 14 0.08
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (185 bp):
CCGACCAGAGAGGCAGAATGCGCAAGCCGGGGGACCAACTCGGTCCCCCCTACGTGCTGCCGATC
CTACTGCCACAACCCTCGATCCAGTCCAATCTTAGACTGGGAATGAACTCCATATGCTTAAACTG
GCGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCATGCAGACACTCAA
Found at i:16517320 original size:26 final size:26
Alignment explanation
Indices: 16517282--16517334 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16517272 TCCTCAAACT
16517282 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16517308 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16517334 C
1 C
16517335 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16517497 original size:26 final size:26
Alignment explanation
Indices: 16517468--16517518 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16517458 GGTCCGATCA
16517468 TAGACT-GGGAATGAACTCCGTATGCT
1 TAGACTAGGGAA-GAACTCCGTATGCT
16517494 TAGACTAGGGAAGAACTCCGTATGC
1 TAGACTAGGGAAGAACTCCGTATGC
16517519 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (26 bp):
TAGACTAGGGAAGAACTCCGTATGCT
Found at i:16518229 original size:26 final size:26
Alignment explanation
Indices: 16518188--16518240 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16518178 CTGGTCTGAT
16518188 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16518214 CTTAGACTAGGG-ATGAACTCTATATG
1 CTTAGACT-GGGAATGAACTCCATATG
16518240 C
1 C
16518241 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16519616 original size:26 final size:26
Alignment explanation
Indices: 16519578--16519630 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16519568 GGCTCAAACT
*
16519578 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16519604 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16519630 C
1 C
16519631 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Done.