Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19866354
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 74000 characters in sequence are not A, C, G, or T
File 78 of 100
Found at i:16519957 original size:26 final size:26
Alignment explanation
Indices: 16519921--16519971 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
16519911 CTAGTCTGAT
16519921 CTTAGACT-GGGACTGAACTCCGTATG
1 CTTAGACTGGGGA-TGAACTCCGTATG
* *
16519947 CTTAGATTGGGGATGAACTCTGTAT
1 CTTAGACTGGGGATGAACTCCGTAT
16519972 ACCTAAGTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:16520144 original size:26 final size:26
Alignment explanation
Indices: 16520106--16520158 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16520096 CTGGTTTAAT
16520106 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16520132 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16520158 C
1 C
16520159 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16520151 original size:185 final size:183
Alignment explanation
Indices: 16519762--16520225 Score: 554
Period size: 185 Copynumber: 2.5 Consensus size: 183
16519752 TCTGGCTGGG
* * * *
16519762 GCTTAGACATGGAATGAGCTCCCTATGCCTAAGCCAACCCATGAAAC-AGGTGTGTGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-GCGTGTGGGCGCTCA
* * * * * **
16519826 GCCGGCCGGAGAGGCAGAATGCGTAAGCCAGGGATCGACCCGATCACCCCTGCGTGTTGTCGATC
65 G-CGGCTGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGATCACCCCAGCATGGTACCGATC
* *
16519891 CTACTACCACAACCCTCGATCTAGTCTGATCTTAGACTGGGACTGAACTCCGTAT
129 CTACTACCACAACCCTCGATCTAGTCTAATCTTAGACTGGGAATGAACTCCGTAT
* * * * * ***
16519946 GCTTAGA-TTGGGGATGAACTCTGTATACCTAAGTCAACCCACGAAACGAGCGTGCAAGCGCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCA
*
16520010 GCTGGCTGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGATCCCCCCCAGCATGGTACCGAT
65 GC-GGCTGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGAT-CACCCCAGCATGGTACCGAT
* * ** * *
16520075 CTTGCTACCGGAACCCTCGATCTGGTTTAATCTTAGACTGGGAATGAACTCCGTAT
128 CCTACTACCACAACCCTCGATCTAGTCTAATCTTAGACTGGGAATGAACTCCGTAT
* *
16520131 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAG
* * * *
16520196 CCGATCGGAGAGGTAGAATGCGCAAGCCGG
66 CGGCT-GGAGAGGCAGAATGCGTAAGCCGG
16520226 TGACCAGCAT
Statistics
Matches: 232, Mismatches: 42, Indels: 11
0.81 0.15 0.04
Matches are distributed among these distances:
183 2 0.01
184 90 0.39
185 139 0.60
186 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.20
Consensus pattern (183 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCGCTCAG
CGGCTGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGATCACCCCAGCATGGTACCGATCCT
ACTACCACAACCCTCGATCTAGTCTAATCTTAGACTGGGAATGAACTCCGTAT
Found at i:16520485 original size:159 final size:157
Alignment explanation
Indices: 16520131--16520539 Score: 380
Period size: 157 Copynumber: 2.6 Consensus size: 157
16520121 AACTCCGTAT
* **
16520131 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGTAAGCGCTCAG
* * * *
16520196 CCGATCGGAGAGGTAGAATGCGCAAGCCGGTGACCAGCATGGTCCCCCTTGCGTGCTGTTGATAT
66 CCGATCGGAGAAGCAGAATGCGCAAGCCGGTGACCAGCATGGTCCCCCTTGCGTGCTGCTGATAC
* * *
16520261 GCTACCGCAACCGTCGGTCCAGTCTGA
131 GCTACCACAACCCTCGGTCCAGACTGA
* * *
16520288 TCTTAGAC-TGGGAATGAACTCTGTATGCCTAA-CTCAACCCATGAAACGAGCAT-TCAAGCGCT
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGC-CAACCCACGAAACGAGCATGT-AAGCGCT
* * * * * * * *
16520350 GAGCTGATCGGAGAAGCATAATGCGCGAGCCAGG-GATCGGC-TCGGTCCCCTTCTGCGTGTTGC
63 CAGCCGATCGGAGAAGCAGAATGCGCAAGCC-GGTGACCAGCAT-GGTCCCCCT-TGCGTGCTGC
* * * * *
16520413 TGGTCCCGCTACCACAACCCTTGGT-CTGACTGGG
125 TGAT-ACGCTACCACAACCCTCGGTCCAGACT-GA
* * * * * ***
16520447 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGTAAGCGCTCAG
* *
16520512 CCGGTCGGAGAGGCAGAATGCGCAAGCC
66 CCGATCGGAGAAGCAGAATGCGCAAGCC
16520540 AGGGATCGAC
Statistics
Matches: 198, Mismatches: 43, Indels: 20
0.76 0.16 0.08
Matches are distributed among these distances:
156 4 0.02
157 88 0.44
158 17 0.09
159 87 0.44
160 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGTAAGCGCTCAG
CCGATCGGAGAAGCAGAATGCGCAAGCCGGTGACCAGCATGGTCCCCCTTGCGTGCTGCTGATAC
GCTACCACAACCCTCGGTCCAGACTGA
Found at i:16520556 original size:159 final size:156
Alignment explanation
Indices: 16520131--16520567 Score: 427
Period size: 159 Copynumber: 2.8 Consensus size: 156
16520121 AACTCCGTAT
*
16520131 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTCAG
* * * *
16520196 CCGATCGGAGAGGTAGAATGCGCAAGCC-GGTGA-CCAGCATGGTCCCCCTTGCGTGCTGTTGAT
66 CCGATCGGAGAGGCAGAATGCGCAAGCCAGG-GATCGA-C-CGGTCCCCCTTGCGTGCTGCTGAT
* * * *
16520259 ATGCTACCGCAACCGTCGGTCCAGTCTGA
128 ACGCTACCACAACCCTCGGTCCAGACTGA
* * * * * ** *
16520288 TCTTAGAC-TGGGAATGAACTCTGTATGCCTAA-CTCAACCCATGAAACGAGCATTCAAGCGCTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGC-CAACCCACGAAATGAGCATGCGGGCGCTC
* * * * * * * *
16520351 AGCTGATCGGAGAAGCATAATGCGCGAGCCAGGGATCGGCTCGGTCCCCTTCTGCGTGTTGCTGG
64 AGCCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGAC-CGGTCCCCCT-TGCGTGCTGCTGA
* * * *
16520416 TCCCGCTACCACAACCCTTGGT-CTGACTGGG
127 T-ACGCTACCACAACCCTCGGTCCAGACT-GA
* * * *
16520447 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTCAG
* *
16520512 CCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCGGGTCCCCC-CGCGTGCT
66 CCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACC-GGTCCCCCTTGCGTGCT
16520568 ATCGATCCTG
Statistics
Matches: 219, Mismatches: 51, Indels: 20
0.76 0.18 0.07
Matches are distributed among these distances:
156 2 0.01
157 92 0.42
158 19 0.09
159 104 0.47
160 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.19
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCGGGCGCTCAG
CCGATCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCGGTCCCCCTTGCGTGCTGCTGATACG
CTACCACAACCCTCGGTCCAGACTGA
Found at i:16520646 original size:26 final size:26
Alignment explanation
Indices: 16520605--16520657 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16520595 CCGGTTCGAT
*
16520605 CTTAGACTGGAAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
**
16520631 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
16520657 C
1 C
16520658 ATAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:16520867 original size:197 final size:196
Alignment explanation
Indices: 16520511--16520904 Score: 556
Period size: 197 Copynumber: 2.0 Consensus size: 196
16520501 CGGGCGCTCA
* ** * **
16520511 GCCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCGGGTCCCCCCGCGTGCTATCGATCC
1 GCCGATCGGAGAGAAAGAATGCACAAGCCAGGGATCGACCCAGTCCCCCCGCGTGCTATCGATCC
* * * * * * *
16520576 TGCTGCCGCAACCCTCGGTCCGGTTCGATCTTAGACTGGAAATGAACTCTGTATGCTTAGACTGG
66 TGCTGCCGCAACCCTCAGTCCAGTCCAATCTTAGACTGGAAATGAACTCCGTATGCTTAGAATGA
* * * ** *
16520641 GGATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCTGGCCGGAGA
131 GAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCTGACCGGAGA
16520706 G
196 G
* *
16520707 GCCGATCGGAGAGAAAGAATGCACAAGCCAGGGATCGGCCCAGTCCCCCCTGCGTGCTGTCGATC
1 GCCGATCGGAGAGAAAGAATGCACAAGCCAGGGATCGACCCAGTCCCCCC-GCGTGCTATCGATC
*
16520772 CTGCTGCCGCAACCCTCAGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGAGAT
65 CTGCTGCCGCAACCCTCAGTCCAGTCCAATCTTAGACTGGAAATGAACTCCGTATGCTTAGA-AT
*
16520837 -AGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCTGACCGGA
129 GAGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCTGACCGGA
16520901 GAG
194 GAG
16520904 G
1 G
16520905 TAGAATGTGC
Statistics
Matches: 173, Mismatches: 23, Indels: 3
0.87 0.12 0.02
Matches are distributed among these distances:
196 43 0.25
197 129 0.75
198 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.29, T:0.18
Consensus pattern (196 bp):
GCCGATCGGAGAGAAAGAATGCACAAGCCAGGGATCGACCCAGTCCCCCCGCGTGCTATCGATCC
TGCTGCCGCAACCCTCAGTCCAGTCCAATCTTAGACTGGAAATGAACTCCGTATGCTTAGAATGA
GAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGCTGACCGGAGA
G
Found at i:16521238 original size:159 final size:158
Alignment explanation
Indices: 16520986--16521279 Score: 390
Period size: 159 Copynumber: 1.9 Consensus size: 158
16520976 TTAGACTGGG
* * * * *
16520986 AATGAACTCCGTATACCTAAGTCAACCAATGAAATGAGCGTTCGGGCATTGAGCCAATCGGAGAG
1 AATGAACTCCCTATACCTAAGCCAACCAATGAAACGAGCGTACGGGCATTCAGCCAATCGGAGAG
* * *
16521051 GCATAATGCGCAAGCCGAGGATCAGCTCGATCCCCCTCTGCATGCTACCGGTCCTGCTGCCACAA
66 GCAGAATGCGCAAGCCGAGGATCAGCTCGATCCCCC-CTACATGCTACCGATCCTGCTGCCACAA
16521116 CCCTCGACCCGGTTGGGGCTTAGACACAT
130 CCCTCGACCCGGTTGGGGCTTAGACACAT
* * * * * *
16521145 AATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCGTTCAGTCGATCGGAGAG
1 AATGAACTCCCTATACCTAAGCCAACCAATGAAACGAGCGTACGGGCATTCAGCCAATCGGAGAG
* * * * ** *
16521210 GTAGAATGTGCAAGCCGAGGATCGGCTCGATCCCCCCTACATGTTGTCGATCTTGCTGCCACAAC
66 GCAGAATGCGCAAGCCGAGGATCAGCTCGATCCCCCCTACATGCTACCGATCCTGCTGCCACAAC
16521275 CCTCG
131 CCTCG
16521280 GTTCGGTCTG
Statistics
Matches: 114, Mismatches: 21, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
158 28 0.25
159 86 0.75
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (158 bp):
AATGAACTCCCTATACCTAAGCCAACCAATGAAACGAGCGTACGGGCATTCAGCCAATCGGAGAG
GCAGAATGCGCAAGCCGAGGATCAGCTCGATCCCCCCTACATGCTACCGATCCTGCTGCCACAAC
CCTCGACCCGGTTGGGGCTTAGACACAT
Found at i:16521328 original size:26 final size:26
Alignment explanation
Indices: 16521292--16521344 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16521282 TCGGTCTGAT
16521292 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
16521318 CTTAGCCTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16521344 C
1 C
16521345 CTAAGACAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16521430 original size:687 final size:686
Alignment explanation
Indices: 16519604--16521513 Score: 2211
Period size: 686 Copynumber: 2.8 Consensus size: 686
16519594 ACTTCGTATG
* *
16519604 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTTCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGCGCTGAG
* * * ** * * *
16519668 TCGACCGGAGAGGCAGAATGCATAAGTCGAGGATCGACCCGGTCCCCCTCTGCATGCTATCGGT-
65 CCGATCGGAGAGGCATAATGCGCAAGCCGAGGATCG-CTCGGTCCCCCTCTGCATGCTACCGGTC
*
16519732 CTCGCTACCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAATGAGCTCCCTATGCCTAAGCC
129 CT-GCTACCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
* * * * *
16519797 AACCCATGAAACAGGTGTGTGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGTAAGCCAGGGATC
193 AACCCATGAAACGGGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATC
* * * * *
16519862 GACCCGATCACCCCTGCGTGTTGTCGATCCTACTACCACAACCCTC-GATCTAGTCTGATCTTAG
258 GA-CCGATCCCCCCTGCGTGTTGTCGATCCTGCTGCCACAACCCTCGGTTC-GGTCTGATCTTAG
* * * *
16519926 ACTGGGACTGAACTCCGTATGCTTAGATTGGGGATGAACTCTGTATACCTAAGTCAACCCACGAA
321 ACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAA
* *
16519991 ACGAGCGTGCAAGCGCTCAGCTGGCTGGAGAGG-C-A---GA-ATGC-----GT-AAGCCGGGGA
386 ACGAGCGTGCAGGCGCTCAGCTGGCTGGAGAGGCCGATCGGAGA-GCAAAAACTCAAGCCGGGGA
* * * * * * * * *
16520044 TCGACCCGATCCCCCCCAGCATGGTACCGATCTTGCTACCGGAACCCTC-GATCTGGTTTAATCT
450 TCGACCCG-T-CCCCCCTGCGTGCTATCGATCCTGCTGCCGCAACCCTCAG-TCCGGTCTAATCT
* *
16520108 TAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAC
512 TAGACTGGGAATGAACTCCGTATGCTTAGACATAGAATGAACTCCATATGCCTAAGCCAACCCAC
* * * * * *
16520173 GAAATGAGCATGTGGGCGCTCAGCCGATCGGAGAGGTAGAATGCGCAAGCCGGTGACCAGCATGG
577 GAAACGAGCATGCGGGCACTCAGCCGACCGGAGAGGTAGAATGCGCAAGCCGGGGACCAGCATGA
* * * *
16520238 TCCCCCTTGCGTGCTGTTGATATGCTACCGCAACCGTCGGTCCAGTCTGAT
642 TCCCCCCTACGTGCTGTCGATA---TA-C-C-ACCGTCAGTCCAGTCTGAT
* * * **
16520289 CTTAGACTGGGAATGAACTCTGTATGCCTAACTCAACCCATGAAACGAGCATTCAAGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGCGCTGAGC
* * * * * * * *
16520354 TGATCGGAGAAGCATAATGCGCGAGCC-AGGGATCGGCTCGGTCCCCTTCTGCGTGTTGCTGGTC
66 CGATCGGAGAGGCATAATGCGCAAGCCGA-GGATC-GCTCGGTCCCCCTCTGCATGCTACCGGTC
* * * *
16520418 CCGCTACCACAACCCTTGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
129 CTGCTACCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA
** *
16520483 ACCCACAAAATGGGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCG
194 ACCCATGAAACGGGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCG
* * * * *
16520548 ACCGGGTCCCCCC-GCGTGCTATCGATCCTGCTGCCGCAACCCTCGGTCCGGT-TCGATCTTAGA
259 ACC-GATCCCCCCTGCGTGTTGTCGATCCTGCTGCCACAACCCTCGGTTCGGTCT-GATCTTAGA
* * *
16520611 CTGGAAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCATAAGTCAACCCACGAAA
322 CTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * * *
16520676 CGAGCGTGCGGGTGCTCAGCTGGCCGGAGAGGCCGATCGGAGAG-AAAGAATGCACAAGCCAGGG
387 CGAGCGTGCAGGCGCTCAGCTGGCTGGAGAGGCCGATCGGAGAGCAAA-AA--CTCAAGCCGGGG
* * * *
16520740 ATCGGCCCAGTCCCCCCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCAGTCCAGTCCAATCTT
449 ATCGACCC-GTCCCCCCTGCGTGCTATCGATCCTGCTGCCGCAACCCTCAGTCCGGTCTAATCTT
*
16520805 AGACTGGGAATGAACTCCGTATGCTTAGAGATAGAATGAACTCCATATGCCTAAGCCAACCCACG
513 AGACTGGGAATGAACTCCGTATGCTTAGACATAGAATGAACTCCATATGCCTAAGCCAACCCACG
* * * * * *
16520870 AAACGAGCGTGCGGGCACTCAGCTGACCGGAGAGGTAGAATGTGCAAGCTGGGGATCGGC-TCGA
578 AAACGAGCATGCGGGCACTCAGCCGACCGGAGAGGTAGAATGCGCAAGCCGGGGACCAGCAT-GA
16520934 TCCCCCCCTACGTGCTGTCG-TA-A-C-CC-TCAGTCC-GATCTGAT
642 T-CCCCCCTACGTGCTGTCGATATACCACCGTCAGTCCAG-TCTGAT
* * * **
16520975 CTTAGACTGGGAATGAACTCCGTATACCTAAGTCAACCAATGAAATGAGCGTTCGGGCATTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGCGCTGAGC
* *
16521040 CAATCGGAGAGGCATAATGCGCAAGCCGAGGATCAGCTCGATCCCCCTCTGCATGCTACCGGTCC
66 CGATCGGAGAGGCATAATGCGCAAGCCGAGGATC-GCTCGGTCCCCCTCTGCATGCTACCGGTCC
* * * * ***
16521105 TGCTGCCACAACCCTCGACCCGGTTGGGGCTTAGACACATAATGAACTCCCTATGCCTAAGCCAA
130 TGCTACCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * * * *
16521170 CCCATGAAACGGGCGTACGGGCGTTCAGTCGATCGGAGAGGTAGAATGTGCAAGCC-GAGGATCG
195 CCCATGAAACGGGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCAG-GGATCG
* * * *
16521234 GCTCGATCCCCCCTACATGTTGTCGATCTTGCTGCCACAACCCTCGGTTCGGTCTGATCTTAGAC
259 AC-CGATCCCCCCTGCGTGTTGTCGATCCTGCTGCCACAACCCTCGGTTCGGTCTGATCTTAGAC
* * * * *
16521299 TGGGAATGAACTCCATATGCTTAGCCTGGGGATGAACTCCGTATGCCTAAGACAACCCATGAAAT
323 TGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
**
16521364 GAGCGTGTTGGCGCTCAGCTGGCTGGAGAGGCCGATCGGAGAGGCAAAAAACTCAAGCCGGGGAT
388 GAGCGTGCAGGCGCTCAGCTGGCTGGAGAGGCCGATCGGAGA-GC-AAAAACTCAAGCCGGGGAT
* *
16521429 CGACCCGGTCCCCCCTGTGTGCTATCGATCCTGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAG
451 CGACCC-GTCCCCCCTGCGTGCTATCGATCCTGCTGCCGCAACCCTCAGTCCGGTCTAATCTTAG
16521494 ACTGGGAATGAACTCCGTAT
515 ACTGGGAATGAACTCCGTAT
16521514 AACTAAGTCA
Statistics
Matches: 1027, Mismatches: 163, Indels: 68
0.82 0.13 0.05
Matches are distributed among these distances:
683 1 0.00
684 127 0.12
685 228 0.22
686 238 0.23
687 231 0.22
688 2 0.00
689 6 0.01
690 4 0.00
692 1 0.00
695 1 0.00
696 155 0.15
697 32 0.03
698 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (686 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGCGCTGAGC
CGATCGGAGAGGCATAATGCGCAAGCCGAGGATCGCTCGGTCCCCCTCTGCATGCTACCGGTCCT
GCTACCACAACCCTCGATCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
CCATGAAACGGGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGAC
CGATCCCCCCTGCGTGTTGTCGATCCTGCTGCCACAACCCTCGGTTCGGTCTGATCTTAGACTGG
GAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
CGTGCAGGCGCTCAGCTGGCTGGAGAGGCCGATCGGAGAGCAAAAACTCAAGCCGGGGATCGACC
CGTCCCCCCTGCGTGCTATCGATCCTGCTGCCGCAACCCTCAGTCCGGTCTAATCTTAGACTGGG
AATGAACTCCGTATGCTTAGACATAGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGC
ATGCGGGCACTCAGCCGACCGGAGAGGTAGAATGCGCAAGCCGGGGACCAGCATGATCCCCCCTA
CGTGCTGTCGATATACCACCGTCAGTCCAGTCTGAT
Found at i:16521587 original size:514 final size:514
Alignment explanation
Indices: 16520946--16521884 Score: 1362
Period size: 514 Copynumber: 1.8 Consensus size: 514
16520936 CCCCCCTACG
* * *
16520946 TGCTGTCGTAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATACCTAAGTCAA
1 TGCTGCCGCAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATAACTAAGTCAA
* * *
16521011 CCAATGAAATGAGCGTTCGGGCATTGAGCCAATCGGAGAGGCATAATGCGCAAGCCGAGGATCAG
66 CCAATGAAATGAGCGTTCGGGCACTGAGCCAACCGAAGAGGCATAATGCGCAAGCCGAGGATCAG
* *
16521076 CTCGATCCCCCTCTGCATGCTACCGGTCCTGCTGCCACAACCCTCGACCCGGTTGGGGCTTAGAC
131 CTCGATCCCCCTCTGCATGCTACCGGTCCCGCTGCCACAACCCTCGACCCAGTTGGGGCTTAGAC
* * ** * * *
16521141 ACATAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGCG-TTCAGTCGATCG
196 ACAGAATGAACTCCCTATGCCTAAGCCAACCAACAAAACGGGCGTACAGGCGCTT-AGCCGACCG
* * * * * * * * *
16521205 GAGAGGTAGAATGTGCAAGCCGAGGATCGGCTCGATCCCCCCTACATGTTGTCGATCTTGCTGCC
260 GAGAGGCAAAATGCGCAAGCCGAGGATCAGCTCGATCCCCCCTACATGCTGCCAATCCTGCTACC
* *
16521270 ACAACCCTCGGT-TCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGCCTGGGGATGA
325 ACAACCCTCGGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGAGGATGA
16521334 ACTCCGTATGCCTAAGACAACCCATGAAATGAGCGTGTTGGCGCTCAGCTGGCTGGAGAGGCCGA
389 ACTCCGTATGCCTAAGACAACCCATGAAATGAGCGTGTTGGCGCTCAGCTGGCTGGAGAGGCCGA
16521399 TCGGAGAGGCAAAAAACTCAAGCCGGGGATCGACCCGGTCCCCCCTGTGTGCTATCGATCC
454 TCGGAGAGGCAAAAAACTCAAGCCGGGGATCGACCCGGTCCCCCCTGTGTGCTATCGATCC
*
16521460 TGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATAACTAAGTCAA
1 TGCTGCCGCAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATAACTAAGTCAA
* * * **
16521525 CCAA-GAAAATGAGCGTTCGGGCGCTGAGTCAGCCGAAGAGGCATAATGCGCAAGTTGAGGATCA
66 CCAATG-AAATGAGCGTTCGGGCACTGAGCCAACCGAAGAGGCATAATGCGCAAGCCGAGGATCA
* *** ** *
16521589 GCTCGGTCCCCCTCTGCATGCTGTTGGTCCCGCTGCCACAACCCTCGGTCCAGTTGGGGTTTAGA
130 GCTCGATCCCCCTCTGCATGCTACCGGTCCCGCTGCCACAACCCTCGACCCAGTTGGGGCTTAGA
* ** * * *
16521654 TAGGGAATGAACTCCCTATGCCTAAGCCAACCAACAAAACGGGTGTGCAGGCGCTTAGCCGGCCG
195 CACAGAATGAACTCCCTATGCCTAAGCCAACCAACAAAACGGGCGTACAGGCGCTTAGCCGACCG
* * * *
16521719 GAGAGGCAAAATGCGCAAGCTGGGGATCAGCTCGATCCCCCCTGCGTGCTGCCAATCCTGCTACC
260 GAGAGGCAAAATGCGCAAGCCGAGGATCAGCTCGATCCCCCCTACATGCTGCCAATCCTGCTACC
**
16521784 ACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGAGGATGAA
325 ACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGAGGATGAA
*
16521849 CTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTG
390 CTCCGTATGCCTAAGACAACCCATGAAATGAGCGTG
16521885 CGGACTTTCA
Statistics
Matches: 370, Mismatches: 52, Indels: 6
0.86 0.12 0.01
Matches are distributed among these distances:
513 1 0.00
514 366 0.99
515 3 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (514 bp):
TGCTGCCGCAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATAACTAAGTCAA
CCAATGAAATGAGCGTTCGGGCACTGAGCCAACCGAAGAGGCATAATGCGCAAGCCGAGGATCAG
CTCGATCCCCCTCTGCATGCTACCGGTCCCGCTGCCACAACCCTCGACCCAGTTGGGGCTTAGAC
ACAGAATGAACTCCCTATGCCTAAGCCAACCAACAAAACGGGCGTACAGGCGCTTAGCCGACCGG
AGAGGCAAAATGCGCAAGCCGAGGATCAGCTCGATCCCCCCTACATGCTGCCAATCCTGCTACCA
CAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGAGGATGAAC
TCCGTATGCCTAAGACAACCCATGAAATGAGCGTGTTGGCGCTCAGCTGGCTGGAGAGGCCGATC
GGAGAGGCAAAAAACTCAAGCCGGGGATCGACCCGGTCCCCCCTGTGTGCTATCGATCC
Found at i:16521707 original size:159 final size:158
Alignment explanation
Indices: 16521497--16521796 Score: 366
Period size: 159 Copynumber: 1.9 Consensus size: 158
16521487 ATCTTAGACT
* * * * * * *
16521497 GGGAATGAACTCCGTATAACTAAGTCAACCAAGAAAATGAGCGTTCGGGCGCTGAGTCAGCCGAA
1 GGGAATGAACTCCCTATAACTAAGCCAACCAACAAAACGAGCGTGCAGGCGCTGAGCCAGCCGAA
* * * **** *
16521562 GAGGCATAATGCGCAAGTTGAGGATCAGCTCGGTCCCCCTCTGCATGCTGTTGGTCCCGCTGCCA
66 GAGGCAAAATGCGCAAGCTGAGGATCAGCTCGATCCCCC-CTGCATGCTGCCAATCCCGCTACCA
16521627 CAACCCTCGGTCCAGTTGGGGTTTAGATA
130 CAACCCTCGGTCCAGTTGGGGTTTAGATA
** * * * * *
16521656 GGGAATGAACTCCCTATGCCTAAGCCAACCAACAAAACGGGTGTGCAGGCGCTTAGCCGGCCGGA
1 GGGAATGAACTCCCTATAACTAAGCCAACCAACAAAACGAGCGTGCAGGCGCTGAGCCAGCCGAA
* * *
16521721 GAGGCAAAATGCGCAAGCTGGGGATCAGCTCGATCCCCCCTGCGTGCTGCCAATCCTGCTACCAC
66 GAGGCAAAATGCGCAAGCTGAGGATCAGCTCGATCCCCCCTGCATGCTGCCAATCCCGCTACCAC
16521786 AACCCTCGGTC
131 AACCCTCGGTC
16521797 TGGTCTGATC
Statistics
Matches: 116, Mismatches: 25, Indels: 1
0.82 0.18 0.01
Matches are distributed among these distances:
158 30 0.26
159 86 0.74
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (158 bp):
GGGAATGAACTCCCTATAACTAAGCCAACCAACAAAACGAGCGTGCAGGCGCTGAGCCAGCCGAA
GAGGCAAAATGCGCAAGCTGAGGATCAGCTCGATCCCCCCTGCATGCTGCCAATCCCGCTACCAC
AACCCTCGGTCCAGTTGGGGTTTAGATA
Found at i:16521835 original size:26 final size:26
Alignment explanation
Indices: 16521806--16521858 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16521796 CTGGTCTGAT
*
16521806 CTTAGACTG-GGAATGAACTCTGTATG
1 CTTAGACTGAGG-ATGAACTCCGTATG
16521832 CTTAGACTGAGGATGAACTCCGTATG
1 CTTAGACTGAGGATGAACTCCGTATG
16521858 C
1 C
16521859 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGGATGAACTCCGTATG
Found at i:16522576 original size:26 final size:26
Alignment explanation
Indices: 16522539--16522589 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16522529 GCTAAAACTC
16522539 TTAGACTGGGAATGAACTCCATATGA
1 TTAGACTGGGAATGAACTCCATATGA
*
16522565 TTAGACAT-GGAATGAGCTCCATATG
1 TTAGAC-TGGGAATGAACTCCATATG
16522590 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.33, C:0.16, G:0.24, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGA
Found at i:16523619 original size:26 final size:26
Alignment explanation
Indices: 16523590--16523642 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16523580 CCGGTCCAAT
16523590 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
** *
16523616 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
16523642 C
1 C
16523643 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:16524329 original size:26 final size:26
Alignment explanation
Indices: 16524277--16524329 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16524267 CCGGTCCGAT
*
16524277 CTTAGAATGGGAATGAACTTCGCATG
1 CTTAGAATGGGAATGAACTCCGCATG
* *
16524303 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGCATG
16524329 C
1 C
16524330 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGCATG
Found at i:16525046 original size:158 final size:158
Alignment explanation
Indices: 16524761--16525103 Score: 343
Period size: 158 Copynumber: 2.2 Consensus size: 158
16524751 CTGGTTCAAT
* * *
16524761 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCATGAAATGAGCATTCGGGCACTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCATGCGGGCACTCAGC
** * * * ** * ***
16524826 CTGCCGGAGAGGCATAATGCGTAAGTCGGGGATCGGCCCAATCCCTTCTACGTGCTGTCGATCCC
66 CAACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAATCCCCCCTACATGCCACCGATCCC
*
16524891 GCTGCCACAACCCTCGGTCTGGCTGGGG
131 ACTGCCACAACCCTCGGTCTGGCTGGGG
* **
16524919 CTTAGACAT-GGAATGAACTCTC-TATGCCTAAGTCAACCCATGAAATGTA-CGTGCGGGCGTTC
1 CTTAGAC-TGGGAATGAACTC-CGTATGCCTAAGTCAACCCATGAAATG-AGCATGCGGGCACTC
* * * *
16524981 AGCCAACCGGAGAGGCAGAATGTGCAAGCCGGGGATTGGCCCAGTCCCCCCTGCATGCCACCGAT
63 AGCCAACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAATCCCCCCTACATGCCACCGAT
* * * * * * **
16525046 CCTACTGTCGCAACCCTCGGTTCAGTC-CGAT
128 CCCACTGCCACAACCCTCGG-TCTGGCTGGGG
*
16525077 CTTAGCCTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
16525104 TTAGACTGGG
Statistics
Matches: 148, Mismatches: 31, Indels: 12
0.77 0.16 0.06
Matches are distributed among these distances:
157 2 0.01
158 139 0.94
159 7 0.05
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.21
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCATGCGGGCACTCAGC
CAACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAATCCCCCCTACATGCCACCGATCCC
ACTGCCACAACCCTCGGTCTGGCTGGGG
Found at i:16525106 original size:26 final size:26
Alignment explanation
Indices: 16525077--16525129 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16525067 TCAGTCCGAT
*
16525077 CTTAGCCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16525103 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16525129 C
1 C
16525130 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16525427 original size:26 final size:26
Alignment explanation
Indices: 16525370--16525431 Score: 97
Period size: 26 Copynumber: 2.4 Consensus size: 26
16525360 TGTGGTTCGA
*
16525370 GAATTAACTCCGTATGCTTAGACAGG
1 GAATGAACTCCGTATGCTTAGACAGG
*
16525396 GAATGAACTCCGTATGCTTAGACTGG
1 GAATGAACTCCGTATGCTTAGACAGG
*
16525422 GGATGAACTC
1 GAATGAACTC
16525432 TGTACGCCTA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
GAATGAACTCCGTATGCTTAGACAGG
Found at i:16525620 original size:26 final size:26
Alignment explanation
Indices: 16525582--16525634 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16525572 CCAGTCTGAT
16525582 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16525608 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16525634 C
1 C
16525635 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16526101 original size:159 final size:158
Alignment explanation
Indices: 16525766--16526175 Score: 504
Period size: 159 Copynumber: 2.6 Consensus size: 158
16525756 CCGATTCGAT
* * *
16525766 CTTAGAC-TGGGAATGAACT-CTGTATGCCTAAGCCAACCCACGAAAC-GAGCGTTCAGGCGCTG
1 CTTAGACAT-GGAATGAACTCCT-TATGCCTAAGCCAACCCACGAAACAG-GCGTGCAGGTGCTC
* * * * * * * *
16525828 AGCCAACCGGAGAGGCATAATGCGCAAGCTGGGGATCGACCCGTCCCCCTTTGCGTACTGCTAGT
63 AGCCAGCCGGAGAGGAAGAATGCGCAAGCCGAGGATCGACCCGTCCCCCTCTGCGTACTACCAGT
*
16525893 CCCACTGCCACAACCCTCGGTCCAGCTAGGG
128 CCCACTACCACAACCCTCGGTCCAGCTAGGG
* * * *
16525924 CTTAGACATGCAATGAACTCCTTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGTGCTTAGC
1 CTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACAGGCGTGCAGGTGCTCAGC
* * * *
16525989 CAGCTGGAGAGGAAGAATGCGTAAGCCGAGGATCGACCCTGTCCCCCTCTGCGTGCTACCGGTCC
66 CAGCCGGAGAGGAAGAATGCGCAAGCCGAGGATCGACCC-GTCCCCCTCTGCGTACTACCAGTCC
* *
16526054 CGCTACCACAACCCTCGGTCC-GACTGGGG
130 CACTACCACAACCCTCGGTCCAG-CTAGGG
* *
16526083 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACAGGCGTGCAGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACAGGCGTGCAGGTGCTCAGC
* * *
16526148 CGGCCGGAGAGGAAGAATACACAAGCCG
66 CAGCCGGAGAGGAAGAATGCGCAAGCCG
16526176 TATGCTTAGA
Statistics
Matches: 215, Mismatches: 32, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
158 85 0.40
159 130 0.60
ACGTcount: A:0.25, C:0.31, G:0.27, T:0.17
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCACGAAACAGGCGTGCAGGTGCTCAGC
CAGCCGGAGAGGAAGAATGCGCAAGCCGAGGATCGACCCGTCCCCCTCTGCGTACTACCAGTCCC
ACTACCACAACCCTCGGTCCAGCTAGGG
Found at i:16526209 original size:26 final size:26
Alignment explanation
Indices: 16526173--16526232 Score: 120
Period size: 26 Copynumber: 2.3 Consensus size: 26
16526163 AATACACAAG
16526173 CCGTATGCTTAGACTGAGGATGAACT
1 CCGTATGCTTAGACTGAGGATGAACT
16526199 CCGTATGCTTAGACTGAGGATGAACT
1 CCGTATGCTTAGACTGAGGATGAACT
16526225 CCGTATGC
1 CCGTATGC
16526233 CTAATTCAAC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.27
Consensus pattern (26 bp):
CCGTATGCTTAGACTGAGGATGAACT
Found at i:16527205 original size:156 final size:159
Alignment explanation
Indices: 16526864--16527205 Score: 363
Period size: 159 Copynumber: 2.2 Consensus size: 159
16526854 ACTTAGTATC
* * * * *
16526864 CTTAGACATGGAATGAACTCAGTACGCCTAAGCTAACCCATGAAACAAGCATGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCGAACCCACGAAACAAGCATACGGGCGCTCAGC
* * * * * *
16526929 CGGTCGAAGAGGCAGAATGCGTAAGCTAGGGATCGGCCTGGTCCCCCTCTACATGCTGTCGATCC
66 CGGCCGAAAAGGCAGAATGCGCAACCGAGGGATCGGCCTGGTCCCCCTCTACATGCTGCCGATCC
* *
16526994 AGCTACCACAACCCTCGGTCTGACTGGGG
131 AGCTACCACAACCCTCGGTCTGACTCGAG
* * * * *
16527023 CTTAGACATGGAATGAACTCCCTATGCCTAAGCGAACCCGCGAAACAGGCGTACGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCGAACCCACGAAACAAGCATACGGGCGCTCAGC
* *
16527088 CGGCCGAAAAGGCAGAATGCGCATCCGA-GGATCGG-CTCGGT-CCCC-CTGCATGCTGCCGATC
66 CGGCCGAAAAGGCAGAATGCGCAACCGAGGGATCGGCCT-GGTCCCCCTCTACATGCTGCCGATC
* ** ** * * *
16527149 CTGCTGTCGTAACCCTTGGTCTG-GTCCGAT
130 CAGCTACCACAACCCTCGGTCTGACT-CGAG
16527179 CTTAGAC-TGGGAATGAACTCCGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
16527206 TTAGATGGGG
Statistics
Matches: 151, Mismatches: 29, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
155 2 0.01
156 56 0.37
157 6 0.04
158 10 0.07
159 77 0.51
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCGAACCCACGAAACAAGCATACGGGCGCTCAGC
CGGCCGAAAAGGCAGAATGCGCAACCGAGGGATCGGCCTGGTCCCCCTCTACATGCTGCCGATCC
AGCTACCACAACCCTCGGTCTGACTCGAG
Found at i:16527208 original size:26 final size:26
Alignment explanation
Indices: 16527179--16527231 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16527169 CTGGTCCGAT
16527179 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGA-TGGGGAATGAACTCCGTATG
*
16527205 CTTAGATGGGGGATGAACTCCGTATG
1 CTTAGATGGGGAATGAACTCCGTATG
16527231 C
1 C
16527232 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGATGGGGAATGAACTCCGTATG
Found at i:16527940 original size:26 final size:25
Alignment explanation
Indices: 16527902--16527953 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 25
16527892 GGCTCAAACT
*
16527902 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAA-TCCGTATG
16527928 CTTAGACAT-GGAATGAATCCGTATG
1 CTTAGAC-TGGGAATGAATCCGTATG
16527953 C
1 C
16527954 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 8 0.33
26 15 0.62
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGGAATGAATCCGTATG
Found at i:16528827 original size:26 final size:26
Alignment explanation
Indices: 16528788--16528840 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16528778 CCGGTCCGAT
*
16528788 CTTAGACTGAGAATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
16528814 CTTAGACATG-GAATGAACTCCGTATG
1 CTTAGAC-TGAGAATGAACTCCGTATG
16528840 C
1 C
16528841 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:16528846 original size:184 final size:184
Alignment explanation
Indices: 16528629--16529049 Score: 508
Period size: 184 Copynumber: 2.3 Consensus size: 184
16528619 TCTGGCTGGG
* *
16528629 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAAGCGTACGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAG
* * * * **
16528694 TCGGCCGGAGAGGCAGAATGCGCAAGCTGGGGAT-TGTCTCGA-TCACCCCTACATGCTACCGAT
66 CCGGCCGAAAAGGCAGAATGCGCAAGCCGGGGATCAAT-TCGATTC-CCCCTACATGCTACCGAT
* * * ** *
16528757 CTTGCTGTCGCAACCCTTGGTCCGGTCCGATCTTAGACTGAGAATGAACTTCGTAT
129 CCTGCTGTCGCAACCCTCGATCCGGTCCGATCTTAGACTGAGAATGAACACCATAT
* * *
16528813 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC-TGGAAACGAGCGTGCGGGCGCTTA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAT-GAAACGAGCGTACGGGCACTCA
* * * * * *
16528877 GCCGGTCGAAAAGGTAGAATGTGTAAGCCGGGGATCAATTCGATTCGCCCTACGTGCTACCGATC
65 GCCGGCCGAAAAGGCAGAATGCGCAAGCCGGGGATCAATTCGATTCCCCCTACATGCTACCGATC
* * * *
16528942 CTGCTGTCGTAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACACCATAT
130 CTGCTGTCGCAACCCTCGATCCGGTCCGATCTTAGACTGAGAATGAACACCATAT
* * *
16528997 GCTTAGAC-TGTGGATGAACTCCGTTTGCCTAAGTCAACCCATGAAACGAGCGT
1 GCTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGT
16529050 GCGAACGCTC
Statistics
Matches: 202, Mismatches: 30, Indels: 10
0.83 0.12 0.04
Matches are distributed among these distances:
183 3 0.01
184 195 0.97
185 4 0.02
ACGTcount: A:0.25, C:0.27, G:0.26, T:0.23
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAG
CCGGCCGAAAAGGCAGAATGCGCAAGCCGGGGATCAATTCGATTCCCCCTACATGCTACCGATCC
TGCTGTCGCAACCCTCGATCCGGTCCGATCTTAGACTGAGAATGAACACCATAT
Found at i:16530159 original size:26 final size:26
Alignment explanation
Indices: 16530120--16530170 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16530110 GGTCTGATCA
*
16530120 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCATATGCT
*
16530146 TAGACTGGGGATGAACTCCATATGC
1 TAGACTGGGAATGAACTCCATATGC
16530171 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCT
Found at i:16530704 original size:550 final size:551
Alignment explanation
Indices: 16529721--16530747 Score: 1275
Period size: 550 Copynumber: 1.9 Consensus size: 551
16529711 AGACCCTCTA
** * *
16529721 CGTGCTGTCGATCCTGCTGTTGATCCTACTATCGCAGCCCTCGATCCGGTCCGATCTTAGACTGG
1 CGTGCTGTCGATCCTGCTACTGATCCTACTACCGCAACCCTCGATCCGGTCCGATCTTAGACTGG
* * * *
16529786 GAATGAACTCCATATGCTTAGACATAGAATGAACTCTGTATGCCTAAGCCAACCCGCGAAATGAG
66 GAATGAACTCCATATGCTTACACATAGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG
* * ** * * * *
16529851 TGTTCGGGCACTAAGGTGGTCGGAGAGGCATAATGCACAAGTCGGGGATCAGCCCGGTCCCCCTC
131 CGTGCGGGCACTAAGCCGCTCGGAGAGGCAGAATGCACAAGCCGGGGATCAGCCCGGTCACCCTC
* * * * *
16529916 TGCGTGCTGTCGATCCTGCTGCCACAAGCCTCAGTCCGGCTGCGGCTTAGACGTGGAATGAACTC
196 TACGTGCTGTCGATCCTGCTGCCACAACCCTCAGTCCGGATCCAGCTTAGACGTGGAATGAACTC
* * *
16529981 CCTAGCCTAAGCCAACCCACGAAACGGGCGTGTGGGCGTTCAGCCGGCCGGAGAGGTAGAATACG
261 CCTAGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGTAGAATACG
* ** * *
16530046 CAAGCAGGGGATCGATTCGGTCCCCCCTACGCGCTGCCGATCCTGCTGCCACAACCCTCAGTTCG
326 CAAGCAGAGGATCGACCCGATCCCCCCTACGCGCTGCCGATCCTGCTGCCACAACCCTCAGTCCG
* *
16530111 GTCTGATCATAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAG
391 ATCTGATCATAGACCGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAG
*
16530176 TCAACCCACGAAACGAGCGTACGGCCGCTCAGCCAATCGGAGAGGCTGACCGGAGAGGCAGAATG
456 TCAACCAACGAAACGAGCGTACGGCCGCTCAGCCAATCGGAGAGGCTGACCGGAGAGGCAGAATG
16530241 TACAAGCCGAGGATCGGTTCGATCCCTCCTG
521 TACAAGCCGAGGATCGGTTCGATCCCTCCTG
* * * *
16530272 CGTGTTGTCGATCCTGCTACTGGTCCTGCTACCGCAACCCTC-AGTCCGGTCCTATCTTAGACTG
1 CGTGCTGTCGATCCTGCTACTGATCCTACTACCGCAACCCTCGA-TCCGGTCCGATCTTAGACTG
* *
16530336 GGAATGAACTCCGTATGCTTACACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA
65 GGAATGAACTCCATATGCTTACACATAGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA
* ** * **
16530401 GCGTGCTGGTGCTTAGCCGACT-GGAGAGGCAGAATGCGTAAGCCGGGGATC-GACCCGGT-ACC
130 GCGTGCGGGCACTAAGCCG-CTCGGAGAGGCAGAATGCACAAGCCGGGGATCAG-CCCGGTCACC
* * * *
16530463 C-CTACGTGCTGTCGATCCTG-TCGTCACAACCCTCGGTCC-GATCCAATCTTAGAC-TGGGGAT
193 CTCTACGTGCTGTCGATCCTGCT-GCCACAACCCTCAGTCCGGATCC-AGCTTAGACGT-GGAAT
* * *
16530524 GAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCGTGCGGGCGCTCAGTCC-GTCGGAGAGGT
255 GAACTCCCTA-GCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG-CCGGCCGGAGAGGT
* * * * * * * * * *
16530588 AGAATGCGCAAGTC-GAGGATTGGCCCGATCCGCCCTGCGTGCTGTCGATCTTGCTGTCGCAACC
318 AGAATACGCAAG-CAGAGGATCGACCCGATCCCCCCTACGCGCTGCCGATCCTGCTGCCACAACC
* ** * *
16530652 CTC-GATCCGATCTGATCTTAGACCGGGCGTGAACTCTGTATGCTTAGACTGGGGATGAACTTCA
382 CTCAG-TCCGATCTGATCATAGACCGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCA
* *
16530716 TTTGCCTAAGTCAACCAACGAAATGAGCGTAC
446 TATGCCTAAGTCAACCAACGAAACGAGCGTAC
16530748 AGATGATCGG
Statistics
Matches: 398, Mismatches: 68, Indels: 21
0.82 0.14 0.04
Matches are distributed among these distances:
548 5 0.01
549 53 0.13
550 181 0.45
551 158 0.40
552 1 0.00
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.21
Consensus pattern (551 bp):
CGTGCTGTCGATCCTGCTACTGATCCTACTACCGCAACCCTCGATCCGGTCCGATCTTAGACTGG
GAATGAACTCCATATGCTTACACATAGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAG
CGTGCGGGCACTAAGCCGCTCGGAGAGGCAGAATGCACAAGCCGGGGATCAGCCCGGTCACCCTC
TACGTGCTGTCGATCCTGCTGCCACAACCCTCAGTCCGGATCCAGCTTAGACGTGGAATGAACTC
CCTAGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGTAGAATACG
CAAGCAGAGGATCGACCCGATCCCCCCTACGCGCTGCCGATCCTGCTGCCACAACCCTCAGTCCG
ATCTGATCATAGACCGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCATATGCCTAAG
TCAACCAACGAAACGAGCGTACGGCCGCTCAGCCAATCGGAGAGGCTGACCGGAGAGGCAGAATG
TACAAGCCGAGGATCGGTTCGATCCCTCCTG
Found at i:16531788 original size:26 final size:26
Alignment explanation
Indices: 16531758--16531810 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16531748 GTTGACTTAG
* *
16531758 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGGCTAA
*
16531784 GCATACAGAGTTCATTCCCAGGCTAA
1 GCATACAGAGTTCATCCCCAGGCTAA
16531810 G
1 G
16531811 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGGCTAA
Found at i:16532282 original size:26 final size:26
Alignment explanation
Indices: 16532232--16532284 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16532222 GTTGGCTTAG
*
16532232 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATATCTAA
16532258 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACGGAGTTCATT-CCATATCTAA
16532284 G
1 G
16532285 ATCGGATCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATATCTAA
Found at i:16533162 original size:158 final size:157
Alignment explanation
Indices: 16532871--16533325 Score: 457
Period size: 159 Copynumber: 2.9 Consensus size: 157
16532861 CACAGGACCA
* * * * * *
16532871 ACAGCAGGATCGGTAGCACGCAGGGAGGGATCGGGCTGATCCTCGGCTTACGTATTTTGCCTCTT
1 ACAGCAGGATCGGCAGCACGCAGGG-GGGACCGGGCCGATCCCCGGCTTGCGCATTTTGCCTCTT
* * * * * * *
16532936 TGGCCGGCTCAGCGCCCGCACGCTCATTTCATGGGTTGACTTACGCATACGGAGTTCATCCCCA-
65 CGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAT-TCCAT
* * *
16533000 GTCTAAG-ATAGGACAGGATCAATGGTTGCG
129 GTCTAAGCACA-G-CAGGACCAAGGGTTGCG
* ** *
16533030 ACAGCAGGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGTTTTGCACATTTTGCCTCTTC
1 ACAGCAGGATCGGCAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTTTGCCTCTTC
* * * * *
16533095 GGCCGACTGAGCGCCAGCACACCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
66 GGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
* * * *
16533160 CTAAGCCCCAGCTGGACCGAGGGTTGTG
131 CTAAG-CACAGCAGGACCAAGGGTTGCG
* * * ** * * * *
16533188 GCAGCGGGACCGGCAGCTTGCAGAGGGGGACCAGGCCAATCCCCGGCTTGTGCATTCTGCCTCTT
1 ACAGCAGGATCGGCAGCACGCAG-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTTTGCCTCTT
* * *
16533253 CGACCGGCTGAACGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCAT-GCAGAGTTCATTCCAT
65 CGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAG-GGAGTTCATTCCAT
16533317 GTCTAAGCA
129 GTCTAAGCA
16533326 TACGAAGTTC
Statistics
Matches: 240, Mismatches: 51, Indels: 11
0.79 0.17 0.04
Matches are distributed among these distances:
157 3 0.01
158 117 0.49
159 119 0.50
160 1 0.00
ACGTcount: A:0.18, C:0.29, G:0.31, T:0.22
Consensus pattern (157 bp):
ACAGCAGGATCGGCAGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTTTGCCTCTTC
GGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
CTAAGCACAGCAGGACCAAGGGTTGCG
Found at i:16534952 original size:26 final size:26
Alignment explanation
Indices: 16534922--16534974 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16534912 GTTGACTTAG
*
16534922 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
16534948 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16534974 G
1 G
16534975 ATCGGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16534961 original size:914 final size:895
Alignment explanation
Indices: 16533174--16535133 Score: 2759
Period size: 914 Copynumber: 2.2 Consensus size: 895
16533164 GCCCCAGCTG
* * * *** * * *
16533174 GACCGAGGGTTGTGGCAGCGGGACCGGCAGCTTGCAGAGGGGGACCAGG-CCAATCCCCGGCTTG
1 GACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAG-GGGGGACC-GGACCGATCCCCGACTCG
* * *
16533238 TGCATTCTGCCTCT-TCGACCGGCTGAACGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATG
64 TGCATTCTGCCTCTCTAG-TCGGCTGAACGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATA
* *
16533302 CAGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGAGTTTGAGCCACGGTGC
128 CGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGAGTTTGAGCCACGATGC
*
16533367 ACATGCTGACCTCGGGCATGTGCTGGTGCCAAATTTTTTTCGCCCGGGGCACCATCGTCGGAGAG
193 ACATGCTGACCTCGGGCATGTGCTGGTGCCAAATTTTTTTCACCCGGGGCACCATCGTCGGAGAG
** ** * * *
16533432 CCTAATTGGTGGTATTGGGGGTTCCGACGATTGGGGGGGCCGAGGGGTGTGCGCACATGATGTGT
258 CCTAACCGACGGCATTGCGGGTTCCGACGATTGGGGGGGCCGAGGGGTGTGCGCACATGATGTGC
* *
16533497 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
323 GATGGGTGCTCGTACTTGGCCCTTATATTGGCCCCCCATCCCTCATCAAACCTCGAGAACTCACA
*
16533562 CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAATTGG
388 CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAATGG
* *
16533627 GGACACTTTTTTCAGACGATCACAAAATCTTCTCCACTTCGAATTTTTAGCTGAATTTTTTTATG
453 GGACACTTTTTTCAAACGATCACAAAATCTTCTCCACTTCGAATTTTTAGCTGAATTTTGTTATG
*
16533692 CATGCCAAAAAAAATACAAGAATCACCTCTACCAAATTTGAGGTCAAAAATCTTTCTAAAAAAAT
518 CATGCCAAAAAAAATACAAGAATCACCTCTACCAAATTTGAGGACAAAAATCTTTCTAAAAAAAT
* * * *
16533757 TTTAAAAAATCCAGAATCATAAAAAGTTTTAAAAATTGTAAAAAATAGAAAATGGGTCGTCTTGC
583 TTTAAAAAATCCAGAACCATAAAAAGTTTCAAAAATTATAAAAAATAGAAAACGGGTCGTCTTGC
*
16533822 CACGAAACTTCACATTAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCAAATAAATGGCATT
648 CACGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCAAATAAATGGCATT
* *
16533887 GGCATGGCAGAAATATGAAGATGTGCTTGAACCCACCTACCACCCGTTCCATCCCCGGCTTGCGC
713 GGAATGGCAGAAATATGAAGATGTGCTTGAACCCACCTACCACCAGTTCCATCCCCGGCTTGCGC
* *
16533952 AGCCTGCCTCTCTGGTCGCATGAGCGTTCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGA
778 AGCCTGCCTCTCTGGTCGCATGAGCGTCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGA
*
16534017 GTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCCAAGATCAGACCGA
843 GTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCCAAGATCAGA-CGA
* ** * **
16534071 -ACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGTAGGGGGGACCGGGCCGATCTTCGACTCGTG
1 GACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGGGGGGACCGGACCGATCCCCGACTCGTG
* * * *
16534135 CATTCTGCCTCTCTAGTCGGCTGAGCACCCGCACGCTCATTTTGTGAGTTGGCTTAGGCATACGG
66 CATTCTGCCTCTCTAGTCGGCTGAACGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGG
*
16534200 AGTTCATTCCATGCCTAAGCATAC-AGAGTTCATTCCCAGTCTAAGAGTTTGAGCCACGATGCAC
131 AGTTCATTCCATGTCTAAGCATACGA-AGTTCATTCCCAGTCTAAGAGTTTGAGCCACGATGCAC
* ** * * * *
16534264 ATGTTGGGCTCGGGCATGTGTTGGTGCCACATTTTTTTTACCCGAGGCACCATCGTCGGAGCATC
195 ATGCTGACCTCGGGCATGTGCTGGTGCCAAATTTTTTTCACCCG-GG-------G-C--ACCATC
* *
16534329 GTCGGAGAGCCTAACCGACGGCATTGCGGGTTCTGACGATTGGGGGGCCGGGGGGCCGGGGGGTG
249 GTCGGAGAGCCTAACCGACGGCATTGCGGGTTCCGACGATT-----G--GGGGGGCCGAGGGGTG
16534394 TGCGCACATGATGTGCGATGGGTGCTCGTACTTGGCCCTTATATTGGCCCCCCATCCCTCATCAA
307 TGCGCACATGATGTGCGATGGGTGCTCGTACTTGGCCCTTATATTGGCCCCCCATCCCTCATCAA
* *
16534459 ACCTCGAGAACTCACACGCCCTTAATGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCAT
372 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCAT
* *
16534524 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTCTCCACTTCGAGTTTTT
437 TAAAGTGTCT-AAATGGGGACACTTTTTTCAAACGATCACAAAATCTTCTCCACTTCGAATTTTT
* * * *
16534589 AGCTGAATTTTGTTGTGCATGCCAACAAAAATACAAGGA-CAACCTCTACCAAATTTGGGGACAA
501 AGCTGAATTTTGTTATGCATGCCAAAAAAAATACAAGAATC-ACCTCTACCAAATTTGAGGACAA
* * * *
16534653 AAATCTTTCTAAAAAAATTTTAAAAAATTCCA-AACCGTAAAATGTTTCCAAAATTATGAAAAAT
565 AAATCTTTCTAAAAAAATTTTAAAAAA-TCCAGAACCATAAAAAGTTTCAAAAATTATAAAAAAT
* *
16534717 ATAAAACGGGTTGTCTTGCCACGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTAC
629 AGAAAACGGGTCGTCTTGCCACGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTAC
* *
16534782 ATGCCATAA-AAATGGCATTGGAATGGCAGAAATATGAATATGTGCTTGAACCCACCTACCACCA
694 AAGCCA-AATAAATGGCATTGGAATGGCAGAAATATGAAGATGTGCTTGAACCCACCTACCACCA
** * * * *
16534846 GTTTGATCCCCGGGTTGTGCATCTTGCCTCTCTGGTCG-ACTGAGCGTCCGCACGCT-AGTTTCA
758 GTTCCATCCCCGGCTTGCGCAGCCTGCCTCTCTGGTCGCA-TGAGCGTCCGCACGCTCA-TTTCA
*
16534909 TGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAA
821 TGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCCAA
* *
16534974 GATCGGACTA
886 GATCAGACGA
* * * * *
16534984 GACCGAGGGTTGTGGCATCAGGATCGGCAGCACACAGGGGGGACCGGATCGATCCCCGACTTGCG
1 GACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGGGGGGACCGGACCGATCCCCGACTCGTG
* * * *
16535049 CATTCTGCCTCTCTAGTCGGCTGACCGCCTGCATGCTCATTTCGTGGGTTGGCTTAGGCATAGGG
66 CATTCTGCCTCTCTAGTCGGCTGAACGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGG
*
16535114 AGTTGATTCCATGTCTAAGC
131 AGTTCATTCCATGTCTAAGC
16535134 CCCAGCCGAA
Statistics
Matches: 935, Mismatches: 100, Indels: 39
0.87 0.09 0.04
Matches are distributed among these distances:
894 3 0.00
895 171 0.18
896 33 0.04
903 1 0.00
904 1 0.00
906 39 0.04
911 1 0.00
913 155 0.17
914 525 0.56
915 6 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (895 bp):
GACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGGGGGGACCGGACCGATCCCCGACTCGTG
CATTCTGCCTCTCTAGTCGGCTGAACGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGG
AGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGAGTTTGAGCCACGATGCACA
TGCTGACCTCGGGCATGTGCTGGTGCCAAATTTTTTTCACCCGGGGCACCATCGTCGGAGAGCCT
AACCGACGGCATTGCGGGTTCCGACGATTGGGGGGGCCGAGGGGTGTGCGCACATGATGTGCGAT
GGGTGCTCGTACTTGGCCCTTATATTGGCCCCCCATCCCTCATCAAACCTCGAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAATGGGGA
CACTTTTTTCAAACGATCACAAAATCTTCTCCACTTCGAATTTTTAGCTGAATTTTGTTATGCAT
GCCAAAAAAAATACAAGAATCACCTCTACCAAATTTGAGGACAAAAATCTTTCTAAAAAAATTTT
AAAAAATCCAGAACCATAAAAAGTTTCAAAAATTATAAAAAATAGAAAACGGGTCGTCTTGCCAC
GAAACTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCAAATAAATGGCATTGGA
ATGGCAGAAATATGAAGATGTGCTTGAACCCACCTACCACCAGTTCCATCCCCGGCTTGCGCAGC
CTGCCTCTCTGGTCGCATGAGCGTCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTT
CATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCCAAGATCAGACGA
Found at i:16535792 original size:26 final size:26
Alignment explanation
Indices: 16535756--16535808 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16535746 GTTGGCTTAG
16535756 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16535782 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16535808 G
1 G
16535809 AATCTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16536083 original size:483 final size:486
Alignment explanation
Indices: 16535114--16536083 Score: 1337
Period size: 491 Copynumber: 2.0 Consensus size: 486
16535104 AGGCATAGGG
* * **
16535114 AGTTGATTCCATGTCTAAGCCCCAGCCGAACAGAGGGTTGTGCCAGTGGGACCGACAGCACGTAA
1 AGTTCATTCCATGTCTAAGCCCCAGCCGAACAGAGGGTCGTGCCAGTGGGACCGACAGCACACAA
* * * * **
16535179 AGGGGGACCGGGTCGATCTCCTGCTTATGCATTATGCCTCTTCGGTCGACTAAACGCCCACACGC
66 AGGGGGACCGAGTCGATCTCCGGCTTACGCATTATGCCTCTCCGACCGACTAAACGCCCACACGC
* *
16535244 TCATTTCATGGGTTGGTTTAGGCATACAGAGTTCATTCCATGTCTATGCATACGAAGTTCATTCC
131 TCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCC
* * * * ***
16535309 CAGTCTAAGAGTTTGAGCCACGGTGCACATGCTGGGCTCGGGCGTGTACTGGTGCTGCATTATTT
196 CAGTCTAAGAATCTGAGCCACGATGCACATGCTGGGCTCGGGCATGTACTGGTGCCAAATTATTT
* * **
16535374 TCGCCCGGGGCACCATCATCAGAGCATCATCGAAAAGCCTAACCGGTGGCATTGGGGGTTCCGGT
261 TCGCCCGAGGCACCA-CAT---A-CATCA-CGAAAAGCCTAACCGGCGGCATTGGGGGTTCCGAC
*
16535439 GATTGGGGGCCAGGGGTGTGCACACATGATGTGTGATGGATGCTGGTACTTGGCCCGTATATTGG
320 GATTGGGGGCCAGGGGTGTGCACACATGATGTGTGATGGATGCTAGTACTTGGCCCGTATATTGG
* *
16535504 CTCCCTATCCCTTATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGG
385 CCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGG
*
16535569 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGC
450 TTTGCTGCCAGTAGCCATTAAAGTCTCTGAAATGGGC
* *
16535606 AGTTCATTCCATGTCTAAGCCCCAGCC-AGACCGAGGGTCGTGGCAGTGGGACCGACAGCACACA
1 AGTTCATTCCATGTCTAAGCCCCAGCCGA-ACAGAGGGTCGTGCCAGTGGGACCGACAGCACACA
* * * * * * *
16535670 GAGGGGGACCGAG-CGATCTCCGGCTTGCGTATTTTGCCTCTCCGACC-AGCTGAGCGCCCGCAC
65 AAGGGGGACCGAGTCGATCTCCGGCTTACGCATTATGCCTCTCCGACCGA-CTAAACGCCCACAC
* * * *
16535733 GCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATT
129 GCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGAAGTTCATT
*
16535798 CCCAGTCTAAGAATCTGAGCCACGATGCACATGCTGGGCTCGGGCATGTGCTGGTGCCAAATT-T
194 CCCAGTCTAAGAATCTGAGCCACGATGCACATGCTGGGCTCGGGCATGTACTGGTGCCAAATTAT
* *
16535862 TTGTCGCCCGAGGCA-C-CAT-CA-C-CGAAGAGCCTAACCGGCGGCATTGGGGGTTCTGACGAT
259 TT-TCGCCCGAGGCACCACATACATCACGAAAAGCCTAACCGGCGGCATTGGGGGTTCCGACGAT
* * * *
16535922 TAGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTAGTACTTGGCCCTTATATTGG
323 T--GGGGGCC-AGGGGTGTGCACACATGATGTGTGATGGATGCTAGTACTTGGCCCGTATATTGG
*
16535987 CCCCCTATCCCTCATCAAACCTCAAGAACTCACATCCCCTTAAAGAGCATTTGAGATTTTATAGG
385 CCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGG
16536052 TTTGCTGCCAGTAGCCATTAAAGTCTCTGAAA
450 TTTGCTGCCAGTAGCCATTAAAGTCTCTGAAA
16536084 AAGGGACACT
Statistics
Matches: 424, Mismatches: 48, Indels: 21
0.86 0.10 0.04
Matches are distributed among these distances:
480 34 0.08
482 8 0.02
483 144 0.34
488 3 0.01
490 5 0.01
491 163 0.38
492 67 0.16
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.25
Consensus pattern (486 bp):
AGTTCATTCCATGTCTAAGCCCCAGCCGAACAGAGGGTCGTGCCAGTGGGACCGACAGCACACAA
AGGGGGACCGAGTCGATCTCCGGCTTACGCATTATGCCTCTCCGACCGACTAAACGCCCACACGC
TCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCC
CAGTCTAAGAATCTGAGCCACGATGCACATGCTGGGCTCGGGCATGTACTGGTGCCAAATTATTT
TCGCCCGAGGCACCACATACATCACGAAAAGCCTAACCGGCGGCATTGGGGGTTCCGACGATTGG
GGGCCAGGGGTGTGCACACATGATGTGTGATGGATGCTAGTACTTGGCCCGTATATTGGCCCCCT
ATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCT
GCCAGTAGCCATTAAAGTCTCTGAAATGGGC
Found at i:16537010 original size:26 final size:26
Alignment explanation
Indices: 16536958--16537010 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
16536948 GTTGACATAG
* *
16536958 GCATACAGAGTTCATCTCTAGTCTAA
1 GCATACAGAGTTCATCTCCAGTATAA
*
16536984 GCATACCGAGTTCAT-TCCCAGTATAA
1 GCATACAGAGTTCATCT-CCAGTATAA
16537010 G
1 G
16537011 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCTCCAGTATAA
Found at i:16537252 original size:32 final size:33
Alignment explanation
Indices: 16537200--16537266 Score: 100
Period size: 32 Copynumber: 2.1 Consensus size: 33
16537190 GGCAGCAGGA
* *
16537200 TCGACAGCACATAGAGGGGGACCGGGCTGATCC
1 TCGACAGCACACAGAGGGGGACCGGGCCGATCC
*
16537233 TCGATAGCACACAG-GGGGGACCGGGCCGATCC
1 TCGACAGCACACAGAGGGGGACCGGGCCGATCC
16537265 TC
1 TC
16537267 CACTGACGCA
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
32 19 0.61
33 12 0.39
ACGTcount: A:0.22, C:0.30, G:0.36, T:0.12
Consensus pattern (33 bp):
TCGACAGCACACAGAGGGGGACCGGGCCGATCC
Found at i:16537383 original size:26 final size:26
Alignment explanation
Indices: 16537332--16537384 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16537322 GTTGACTTAG
*
16537332 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGCCTAA
*
16537358 GCATATGGAGTTCATTCCC-AGCCTAA
1 GCATACGGAGTTCA-TCCCTAGCCTAA
16537384 G
1 G
16537385 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGCCTAA
Found at i:16538059 original size:26 final size:26
Alignment explanation
Indices: 16538030--16538082 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16538020 GTTGGCTTAG
16538030 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATATGGAGTTCATTCCCA-GTCTAA
16538056 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
16538082 G
1 G
16538083 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:16538269 original size:26 final size:26
Alignment explanation
Indices: 16538239--16538291 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16538229 GTTGACTTAG
16538239 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
16538265 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16538291 G
1 G
16538292 TCAGACCGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16539221 original size:26 final size:26
Alignment explanation
Indices: 16539190--16539239 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
16539180 GACTTAGGCG
*
16539190 TACGGATTTCATCCCCAGTCTAAGCA
1 TACGGAGTTCATCCCCAGTCTAAGCA
*
16539216 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATCCCCAGTCTAAG
16539240 ATCAGACCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAGTCTAAGCA
Found at i:16539698 original size:26 final size:26
Alignment explanation
Indices: 16539662--16539713 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16539652 GTCGACTTAG
*
16539662 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATAAGGAGTTCATTCCCA-GTCTAA
16539688 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
16539714 CTGTTTGAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:16540414 original size:26 final size:26
Alignment explanation
Indices: 16540384--16540433 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
16540374 GTTGACTTAG
*
16540384 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCCT-GTCTAA
16540410 GCATACGAAGTTCATTCCCTGTCT
1 GCATACGAAGTTCATTCCCTGTCT
16540434 CAGATCAAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 17 0.77
27 5 0.23
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCTGTCTAA
Found at i:16540928 original size:26 final size:26
Alignment explanation
Indices: 16540885--16540937 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
16540875 GTTGGCTTAG
*
16540885 GCATACGGAGTTTATT-CCATGTCTAA
1 GCATACGAAGTTTATTCCCA-GTCTAA
16540911 GCATACGAAGTTCT-TTCCCAGTCTAA
1 GCATACGAAGTT-TATTCCCAGTCTAA
16540937 G
1 G
16540938 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTTATTCCCAGTCTAA
Found at i:16541110 original size:26 final size:26
Alignment explanation
Indices: 16541081--16541133 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16541071 GTTCACTTAG
16541081 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16541107 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16541133 G
1 G
16541134 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16541461 original size:26 final size:26
Alignment explanation
Indices: 16541424--16541476 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16541414 GTTGGCTTAG
16541424 GCATACGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
16541450 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16541476 G
1 G
16541477 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16542858 original size:26 final size:26
Alignment explanation
Indices: 16542828--16542880 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16542818 GTTGACTTAG
*
16542828 GCATATGAAGTTCATCCCCAGTCTAA
1 GCATAAGAAGTTCATCCCCAGTCTAA
*
16542854 GCATAAGAAGTTCATTCCCAGTCTAA
1 GCATAAGAAGTTCATCCCCAGTCTAA
16542880 G
1 G
16542881 ATTGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATAAGAAGTTCATCCCCAGTCTAA
Found at i:16544679 original size:159 final size:157
Alignment explanation
Indices: 16544231--16544885 Score: 523
Period size: 159 Copynumber: 4.1 Consensus size: 157
16544221 TAAGCATACA
** * *
16544231 GAGTTCATTCC-TAGTCTAAG-ATCAGATCGGACCGAGGGTTGCGGTAGCAGGATCGATAGCACG
1 GAGTTCATTCCAT-GTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGTAGC-GGATCGGTAGCACG
* ** * * * * * * * *
16544294 CAG-GGGGTACCAAGCCAATACCCGGCTTACGCATTCTGCCTCTCTGGCCGACTGAGCGCCCGCA
63 CAGAGGGGGACCGGGCCAATCCCCGGCTTGCACATTATGCCTCTCCGGCCGGCT-AACGCCCGAA
16544358 CGCCCGTTTCGTGGGTTGGCTTAGGCATAGG
127 CGCCCGTTTCGTGGGTTGGCTTAGGCATAGG
* *
16544389 GAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGAGACCGGTAGCACGCA
1 GAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGCG-GATCGGTAGCACGCA
* ** * * * * * * *
16544454 GAGGGAGACCGGGCTGATCCTCGGCTTGCACATTTTGCCTCTTCGACCAGCTAAGCACCCGTACG
65 GAGGGGGACCGGGCCAATCCCCGGCTTGCACATTATGCCTCTCCGGCCGGCTAA-CGCCCGAACG
* *
16544519 CCCGTTTCATCGGTTGGCTTAGGCATAGG
129 CCCGTTTCGTGGGTTGGCTTAGGCATAGG
*
16544548 GAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGCGGCATCGGTAGCACACA
1 GAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGCGG-ATCGGTAGCACGCA
* * * * *
16544613 GAGGGGGATCGGGCCAATCCCCAGCTTGCCCATTATGCCTCTCCGGTCGGCTCAACGGCCGAACG
65 GAGGGGGACCGGGCCAATCCCCGGCTTGCACATTATGCCTCTCCGGCCGGCT-AACGCCCGAACG
* * *
16544678 CCCATTTCGTGGGTTGACTTAGGCATATG
129 CCCGTTTCGTGGGTTGGCTTAGGCATAGG
* * * ** * * * ***
16544707 AAGTTCTTTCCCA-ATCTAAG-ATCAGATCGAACCGAGGGTTGTGGCAGCAGTATCTACAGCACG
1 GAGTTCATT-CCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGTAGC-GGATCGGTAGCACG
* * * ** * * ** * * * * **
16544770 CA-TGGGGGATCAGGCCGGTCCTCGACTTGTGCATTCTACCTCTCCGACCGACTGAGTGCCC-AC
63 CAGAGGGGGACCGGGCCAATCCCCGGCTTGCACATTATGCCTCTCCGGCCGGCT-AACGCCCGA-
* * **
16544833 ACGCTCGTTTCGTAGGTTGGCTTAGGCATACA
126 ACGCCCGTTTCGTGGGTTGGCTTAGGCATAGG
*
16544865 GAGTTCATTCCATGCCTAAGC
1 GAGTTCATTCCATGTCTAAGC
16544886 ATACGGAGTT
Statistics
Matches: 394, Mismatches: 90, Indels: 25
0.77 0.18 0.05
Matches are distributed among these distances:
157 5 0.01
158 136 0.35
159 247 0.63
160 6 0.02
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (157 bp):
GAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGTAGCGGATCGGTAGCACGCAG
AGGGGGACCGGGCCAATCCCCGGCTTGCACATTATGCCTCTCCGGCCGGCTAACGCCCGAACGCC
CGTTTCGTGGGTTGGCTTAGGCATAGG
Found at i:16545090 original size:26 final size:26
Alignment explanation
Indices: 16545054--16545106 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16545044 GTTGACTTAG
16545054 GCATACAGAGTTCA-TCCACAGTCTAA
1 GCATACAGAGTTCATTCC-CAGTCTAA
*
16545080 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16545106 G
1 G
16545107 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16545269 original size:27 final size:26
Alignment explanation
Indices: 16545238--16545291 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
16545228 GTTGGCTTAG
*
16545238 GCATGGGGGAGTTCATT-CCATGTCTAA
1 GCAT-GGGGACTTCATTCCCA-GTCTAA
*
16545265 GCATGTGGACTTCATTCCCAGTCTAA
1 GCATGGGGACTTCATTCCCAGTCTAA
16545291 G
1 G
16545292 ATAAGATAGG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 17 0.71
27 7 0.29
ACGTcount: A:0.22, C:0.22, G:0.26, T:0.30
Consensus pattern (26 bp):
GCATGGGGACTTCATTCCCAGTCTAA
Found at i:16545311 original size:185 final size:183
Alignment explanation
Indices: 16545017--16545647 Score: 579
Period size: 184 Copynumber: 3.4 Consensus size: 183
16545007 CTTCGATCGA
** * * *
16545017 CTGAGCGCCCGCACGCTCATTTTGTAGGTTGACTTAGGCATACAGAGTTCA-TCCACAGTCTAAG
1 CTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCA-TGTCTAAG
* * * *
16545081 CATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTTGCGGTAGCAAGATCAATAG
65 CATACGGAGTTCATTCCCAGTCTAAGATCAGAT-AGATCGAGGGTTGCGGTAGCAGGATCGACAG
* *
16545146 CACACAGGGGGGACCGGGCCGAT-CCCTGGCTTACGCATTCTGCATCTCCGGCGGG
129 CACGCAGGGGGGACCGGGCCGATACCCTGGCTT-CGCATTCTGCATCTCCGGCCGG
* * * **
16545201 CTGAGCGCCTGCACGCTCGTTTCATGGGTTGGCTTAGGCATGGGGGAGTTCATTCCATGTCTAAG
1 CTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCAT-ACGGAGTTCATTCCATGTCTAAG
** * * * *
16545266 CATGTGGACTTCATTCCCAGTCTAAGATAAGATAGGAAT-GAGGGTTGCGGTAGTAGGATCGGCA
65 CATACGGAGTTCATTCCCAGTCTAAGATCAGATA-G-ATCGAGGGTTGCGGTAGCAGGATCGACA
* * * * * *
16545330 GCACGTAGGGGGGACCGGGCTGATCCCAGACTTGTGCATTCTGCCTCTCTGACCGACCTCTCTGA
128 GCACGCAGGGGGGACCGGGCCGATACC---C-TG-GC-TTC-GCAT-TCTG--C-A--TCTCCGG
*
16545395 CTGG
180 CCGG
* * * * * *
16545399 CTTAGCGCCCGTACGCTCATTTCGTGGGTTAACTTAGGCATACTGAGTTCATCCCCA-GTCTAAG
1 CTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCAT-TCCATGTCTAAG
* * * * *
16545463 AATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACAGTAGCAGGATCGACAG
65 CATACGGAGTTCATTCCCAGTCTAAGATCAGA-TAGATCGAGGGTTGCGGTAGCAGGATCGACAG
* * * * *
16545528 CACGCAGGGGGTACCGGGCCGATACCCTGG-TTGCGCATTCTACCTCCCCGGCCAG
129 CACGCAGGGGGGACCGGGCCGATACCCTGGCTT-CGCATTCTGCATCTCCGGCCGG
** * * *
16545583 CTGAGCGCCCGCACGCTTGTTTCATGGCTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
1 CTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGC
16545648 CCCAGTCGGA
Statistics
Matches: 351, Mismatches: 73, Indels: 46
0.75 0.16 0.10
Matches are distributed among these distances:
183 3 0.01
184 91 0.26
185 84 0.24
186 8 0.02
187 1 0.00
189 4 0.01
190 7 0.02
191 4 0.01
192 6 0.02
193 6 0.02
194 1 0.00
195 1 0.00
196 3 0.01
197 86 0.25
198 46 0.13
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.24
Consensus pattern (183 bp):
CTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGC
ATACGGAGTTCATTCCCAGTCTAAGATCAGATAGATCGAGGGTTGCGGTAGCAGGATCGACAGCA
CGCAGGGGGGACCGGGCCGATACCCTGGCTTCGCATTCTGCATCTCCGGCCGG
Found at i:16545773 original size:158 final size:159
Alignment explanation
Indices: 16545589--16545893 Score: 450
Period size: 158 Copynumber: 1.9 Consensus size: 159
16545579 CCAGCTGAGC
* **
16545589 GCCCGCACGCTTGTTTCATGGCTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGT
1 GCCCGCACGCTCGTTTCATGGCTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAAC
* * * * *
16545654 CGGACCGAGGGTTGTGGTAGCGGGATCGGCAGCACGCAGAGGGGG-TCGGGCCAATCCCCGACTT
66 CAGACCGAGGGTTGTGGTAGCGGGACCGGCAGCACACAGAGGGGGACCAGGCCAATCCCCGACTT
*
16545718 GCGCATTCTGCCTCTTCAGCCAGCTAAAT
131 GCGCATTATGCCTCTTCAGCCAGCTAAAT
* *
16545747 GCCCGCACGCTCGTTTTATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAAC
1 GCCCGCACGCTCGTTTCATGGCTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAAC
* * * * *
16545812 CAGACTGAGGGTTGTGGTAGCGGGACCGGTAGCACACAGCGGGGGACCAGGCCAATCCTCGGCTT
66 CAGACCGAGGGTTGTGGTAGCGGGACCGGCAGCACACAGAGGGGGACCAGGCCAATCCCCGACTT
*
16545877 GTGCATTATGCCTCTTC
131 GCGCATTATGCCTCTTC
16545894 GGTCGGCTCA
Statistics
Matches: 129, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
158 99 0.77
159 30 0.23
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (159 bp):
GCCCGCACGCTCGTTTCATGGCTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAAC
CAGACCGAGGGTTGTGGTAGCGGGACCGGCAGCACACAGAGGGGGACCAGGCCAATCCCCGACTT
GCGCATTATGCCTCTTCAGCCAGCTAAAT
Found at i:16546144 original size:26 final size:26
Alignment explanation
Indices: 16546095--16546147 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16546085 GTTGACTTAG
*
16546095 GCATACGGAGTTCATCCTCGGTCTAA
1 GCATACGGAGTTCATCCTCAGTCTAA
16546121 GCATACGGAGTTCATTCCT-AGTCTAA
1 GCATACGGAGTTCA-TCCTCAGTCTAA
16546147 G
1 G
16546148 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCTCAGTCTAA
Found at i:16546468 original size:26 final size:26
Alignment explanation
Indices: 16546438--16546490 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16546428 GTTGGCTTAG
16546438 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
**
16546464 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16546490 G
1 G
16546491 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16546612 original size:195 final size:195
Alignment explanation
Indices: 16546352--16546706 Score: 525
Period size: 195 Copynumber: 1.8 Consensus size: 195
16546342 TAGCACGTAG
* * * *
16546352 AGGGGGATCGGGTCGATCCCCGACTTGTGCATTCTGCCTCTCTGGCTGGCTGAGCACCCGCACGC
1 AGGGGGATCGGGTCGATCCCCGACTTGCGCATTCTACCTCTCCGACTGGCTGAGCACCCGCACGC
* * * *
16546417 TCATTTCATGGGTTGGCTTAGGCATACAGAGTTCAT-TCCATGTCTAAGCATA-TGGAGTTCATT
66 TCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCA-GTCTAAGCATACAGCA-TTCATT
**
16546480 CCCAGTCTAAGATTGGACCGGACCGAGGGTTGTGACAGTAGGACCAGCAGCAGGATCGACTACAC
129 CCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGACAGTAGGACCAGCAGCAGGATCGACTACAC
16546545 GC
194 GC
* ** *
16546547 AGGGGGATTGGGTCGATCCCCGACTTGCGCATTCTACCTCTCCGACTGGCTGAGTGCCTGCACGC
1 AGGGGGATCGGGTCGATCCCCGACTTGCGCATTCTACCTCTCCGACTGGCTGAGCACCCGCACGC
*
16546612 TCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGCATTCATTCC
66 TCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGCATTCATTCC
* *
16546677 CAGTCTAGGATCAGACCGGATCGAGGGTTG
131 CAGTCTAAGATCAGACCGGACCGAGGGTTG
16546707 CAGCAGTTGG
Statistics
Matches: 141, Mismatches: 17, Indels: 4
0.87 0.10 0.02
Matches are distributed among these distances:
195 136 0.96
196 5 0.04
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.25
Consensus pattern (195 bp):
AGGGGGATCGGGTCGATCCCCGACTTGCGCATTCTACCTCTCCGACTGGCTGAGCACCCGCACGC
TCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGCATTCATTCC
CAGTCTAAGATCAGACCGGACCGAGGGTTGTGACAGTAGGACCAGCAGCAGGATCGACTACACGC
Found at i:16546672 original size:26 final size:26
Alignment explanation
Indices: 16546633--16546683 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16546623 GTTGACTTAG
16546633 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
16546659 GCATACAGCA-TTCATTCCCAGTCTA
1 GCATACAG-AGTTCATCCCCAGTCTA
16546684 GGATCAGACC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.31, G:0.14, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16546950 original size:159 final size:157
Alignment explanation
Indices: 16546693--16547004 Score: 423
Period size: 159 Copynumber: 2.0 Consensus size: 157
16546683 AGGATCAGAC
* * *
16546693 CGGATCGAGGGTTGCAGCAGTTGGATCGACAGCACGCAGGGGGGATCGAGCTGATCCCCAGCTTG
1 CGGATCGAGGGTTGCAGCAGTGGGACCGACAACACGCAGGGGGGATCGAGCTGATCCCCAGCTTG
* * *
16546758 CATATTCTGCATCTCCGGTCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAG
66 CA-ATTCTGCATCTCCGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAC
*
16546823 GGAGTTCAATCCATGTCTAAGCCGCAGT
130 GAAGTTCAATCCATGTCTAAGCCGCAGT
* * **
16546851 CGGATCGAGGGTTGTCA-CAGTGGGACCGGCAACACGCAGAGGGGGATCG-GGTCGATCCCTGGC
1 CGGATCGAGGGTTG-CAGCAGTGGGACCGACAACACGCAG-GGGGGATCGAGCT-GATCCCCAG-
* *
16546914 CTGTGC-ATTCTGCCTCTCCGGCCGACTGAGCACCCGCACGTTCGTTTCGTGGGTTGGCTTAGGC
62 CT-TGCAATTCTGCATCTCCGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
*
16546978 ATACGAAGTTCATTCCATGTCTAAGCC
126 ATACGAAGTTCAATCCATGTCTAAGCC
16547005 TACGGAGTTC
Statistics
Matches: 135, Mismatches: 14, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
158 34 0.25
159 96 0.71
160 2 0.01
161 3 0.02
ACGTcount: A:0.18, C:0.28, G:0.32, T:0.23
Consensus pattern (157 bp):
CGGATCGAGGGTTGCAGCAGTGGGACCGACAACACGCAGGGGGGATCGAGCTGATCCCCAGCTTG
CAATTCTGCATCTCCGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
AAGTTCAATCCATGTCTAAGCCGCAGT
Found at i:16547019 original size:26 final size:26
Alignment explanation
Indices: 16546979--16547028 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
16546969 GGCTTAGGCA
16546979 TACGAAGTTCATT-CCATGTCTAAGCC
1 TACGAAGTTCATTCCCA-GTCTAAGCC
* *
16547005 TACGGAGTTCTTTCCCAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
16547029 AGTTTGAGCC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 18 0.86
27 3 0.14
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCC
Found at i:16547027 original size:538 final size:539
Alignment explanation
Indices: 16545987--16547029 Score: 1359
Period size: 538 Copynumber: 1.9 Consensus size: 539
16545977 GAGGATTTCG
* * * * **
16545987 GCAGCAGGATCTACAGCACGCAGGGGGGATCGGGTCGGTCCTCAGCTTGCGTATTCTGTCTCTCC
1 GCAGCAGGATCGACAGCACGCAGGGGGGATCGGGTCGATCCCCAGCTTGCGCATTCTACCTCTCC
* * * *
16546052 GACCGGCTGAGCGCCCGTACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCTCGGT
66 GACCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGT
* * *
16546117 CTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTACGATAGCAGGATC
131 CTAAGCATACGCAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGGATC
* * ** * *
16546182 GACAGCACGCAGGGGGGACTGGGTCGATCCCCGGCTTGTGCATTCTACATCTTCGGCTAGCTGAG
196 GACAGCACGCAGGGGGGACTGGCTCGATCCCCAGCTTGCACATTCTACATCTCCGGCGAGCTGAG
* * * *
16546247 TGCCCATACGCCCGTTTCATGGGTTGTCTTAGACATAAGGAGTTCATTCCATGTCTAAGCCCCAA
261 CGCCCACACGCCCGTTTCATGGGTTGGCTTAGACATAAGGAGTTCAATCCATGTCTAAGCCCCAA
** * * * *
16546312 CTAGACCGAGGGTTGTGGCAACGGGACCGGTAGCACGTAGAGGGGGATCGGGTCGATCCCCGACT
326 CTAGACCGAGGGTTGTCACAACGGGACCGGCAACACGCAGAGGGGGATCGGGTCGATCCCCGACC
* * *
16546377 TGTGCATTCTGCCTCTCTGGCTGGCTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCAT
391 TGTGCATTCTGCCTCTCCGGCCGACTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCAT
*
16546442 ACAGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAG
456 ACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAG
16546507 GGTTGTGACAGTAGGACCA
521 GGTTGTGACAGTAGGACCA
*
16546526 GCAGCAGGATCGACTA-CACGCA-GGGGGATTGGGTCGATCCCC-GACTTGCGCATTCTACCTCT
1 GCAGCAGGATCGAC-AGCACGCAGGGGGGATCGGGTCGATCCCCAG-CTTGCGCATTCTACCTCT
* * * *
16546588 CCGACTGGCTGAGTGCCTGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCA
64 CCGACCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCA
* * * * **
16546653 GTCTAAGCATACAGCA-TTCATTCCCAGTCTAGGATCAGACCGGATCGAGGGTTGC-AGCAGTTG
129 GTCTAAGCATAC-GCAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGA-CAGCAG
* *
16546716 GATCGACAGCACGCAGGGGGGA-TCGAGCT-GATCCCCAGCTTGCATATTCTGCATCTCCGGTCG
192 GATCGACAGCACGCAGGGGGGACT-G-GCTCGATCCCCAGCTTGCACATTCTACATCTCCGG-CG
* * * * *
16546779 A-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAATCCATGTCTAA
254 AGCTGAGCGCCCACACGCCCGTTTCATGGGTTGGCTTAGACATAAGGAGTTCAATCCATGTCTAA
* * * * **
16546843 GCCGC-AGTCGGATCGAGGGTTGTCACAGTGGGACCGGCAACACGCAGAGGGGGATCGGGTCGAT
319 GCCCCAACT-AGACCGAGGGTTGTCACAACGGGACCGGCAACACGCAGAGGGGGATCGGGTCGAT
* * * * *
16546907 CCCTGGCCTGTGCATTCTGCCTCTCCGGCCGACTGAGCACCCGCACGTTCGTTTCGTGGGTTGGC
383 CCCCGACCTGTGCATTCTGCCTCTCCGGCCGACTGAGCACCCGCACGCTCATTTCATGGGTTGGC
* *
16546972 TTAGGCATAC-GAAGTTCATTCCATGTCTAAGCCTACGGAGTTCTTTCCCAGTCTAAGA
448 TTAGGCATACAG-AGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
16547030 GTTTGAGCCA
Statistics
Matches: 431, Mismatches: 64, Indels: 19
0.84 0.12 0.04
Matches are distributed among these distances:
537 6 0.01
538 399 0.93
539 25 0.06
540 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (539 bp):
GCAGCAGGATCGACAGCACGCAGGGGGGATCGGGTCGATCCCCAGCTTGCGCATTCTACCTCTCC
GACCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGT
CTAAGCATACGCAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAGCAGGATC
GACAGCACGCAGGGGGGACTGGCTCGATCCCCAGCTTGCACATTCTACATCTCCGGCGAGCTGAG
CGCCCACACGCCCGTTTCATGGGTTGGCTTAGACATAAGGAGTTCAATCCATGTCTAAGCCCCAA
CTAGACCGAGGGTTGTCACAACGGGACCGGCAACACGCAGAGGGGGATCGGGTCGATCCCCGACC
TGTGCATTCTGCCTCTCCGGCCGACTGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCAT
ACAGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAG
GGTTGTGACAGTAGGACCA
Found at i:16547718 original size:26 final size:26
Alignment explanation
Indices: 16547681--16547733 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16547671 GTTGACTTAG
16547681 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
16547707 GCATAC-GAAGTTCATTCCTAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
16547733 G
1 G
16547734 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16548221 original size:26 final size:26
Alignment explanation
Indices: 16548182--16548232 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
16548172 TGGCTTAGGT
16548182 ATACAGAATACATT-CCATGTCTAAGC
1 ATACAGAATACATTCCCA-GTCTAAGC
* *
16548208 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAATACATTCCCAGTCTAAG
16548233 ATCGGACTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.35, C:0.24, G:0.14, T:0.27
Consensus pattern (26 bp):
ATACAGAATACATTCCCAGTCTAAGC
Found at i:16548408 original size:26 final size:26
Alignment explanation
Indices: 16548378--16548430 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16548368 GTTGACTTAG
16548378 GCATACAAAGTTCA-TCCCTAGTCTAA
1 GCATACAAAGTTCATTCCC-AGTCTAA
**
16548404 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
16548430 G
1 G
16548431 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:16549086 original size:26 final size:26
Alignment explanation
Indices: 16549056--16549108 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16549046 GTTGACTTAG
*
16549056 GCATATGAAGTTCA-TCCTCAGTCTAA
1 GCATACGAAGTTCATTCC-CAGTCTAA
*
16549082 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16549108 G
1 G
16549109 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16551527 original size:26 final size:26
Alignment explanation
Indices: 16551491--16551543 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16551481 GTTGACTTAG
16551491 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
16551517 GCATACGGAGTTCATTCCTAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
16551543 G
1 G
16551544 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:16553497 original size:159 final size:158
Alignment explanation
Indices: 16553183--16553510 Score: 370
Period size: 159 Copynumber: 2.1 Consensus size: 158
16553173 TAAGCATGCA
* * * * **** *
16553183 GAGTTCATTCCTAGTATAAGATCGGTCTGGACCGAGGGTTGCGGTAGTAGGATTGGTAGCACGCA
1 GAGTTCATTCCTAGTATAAGATCAGACTGGACCGAGGGTTGCGGCAGCAGGATCAACAGCACGAA
* * * * ***
16553248 GGGGGGACCGGGCCAATCCCTGAGTTGTGCATTCTACCTCTCCAGTCGGCTTAGTGTTTGAACGC
66 GGGGGGACCGGGCCAATCCCCGACTTGCGCATTCTACCTCTCCAGTCGGCTGAGTGCCCGAACGC
16553313 TCGTTTCGTAGGTTGACTTACGCATACG
131 TCGTTTCGTAGGTTGACTTACGCATACG
* *
16553341 GAGTTCATTCCTAGTTTAAGATCAGACTGGACCGAGGGTTGTGGCAGCAGGATCAACAGCACGTA
1 GAGTTCATTCCTAGTATAAGATCAGACTGGACCGAGGGTTGCGGCAGCAGGATCAACAGCACG--
* ** * * * *
16553406 AAGGGGGG-CTGGGCCGGTCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGTGCCCGTAT
64 AAGGGGGGACCGGGCCAATCCCCGACTTGCGCATTCTACCTCTCCAGTCGGCTGAGTGCCCGAAC
* * *
16553470 GCTCGTTTCGTGGGTTGGCTTAGGCATACG
129 GCTCGTTTCGTAGGTTGACTTACGCATACG
*
16553500 GAGATCATTCC
1 GAGTTCATTCC
16553511 ATGTCTATCC
Statistics
Matches: 139, Mismatches: 29, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
158 53 0.38
159 79 0.57
160 7 0.05
ACGTcount: A:0.18, C:0.24, G:0.32, T:0.26
Consensus pattern (158 bp):
GAGTTCATTCCTAGTATAAGATCAGACTGGACCGAGGGTTGCGGCAGCAGGATCAACAGCACGAA
GGGGGGACCGGGCCAATCCCCGACTTGCGCATTCTACCTCTCCAGTCGGCTGAGTGCCCGAACGC
TCGTTTCGTAGGTTGACTTACGCATACG
Found at i:16553737 original size:25 final size:26
Alignment explanation
Indices: 16553702--16553753 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
16553692 GTTGACTTAG
*
16553702 GCATACGGAGTTCA-TCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16553727 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16553753 G
1 G
16553754 ATCAAATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 13 0.52
26 12 0.48
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16553915 original size:26 final size:26
Alignment explanation
Indices: 16553885--16553937 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16553875 GTTAACTTAG
*
16553885 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
*
16553911 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
16553937 G
1 G
16553938 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGCCTAA
Found at i:16554003 original size:184 final size:183
Alignment explanation
Indices: 16553671--16554096 Score: 446
Period size: 184 Copynumber: 2.3 Consensus size: 183
16553661 CCGACTGAGC
* *
16553671 GCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCAGTCTAAGCATACAGA
1 GCCCGCACACTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCATCCCAGTCTAAGCATACAGA
* * * * *
16553736 GTTCATTCCCAGTCTAAGATCAAATCAGACCAAAGGTTGCGACAGCAGCATCGGTAGCATGCAGG
66 GTTCATTCCCAGCCTAAGATCAAACCAGACCAAAGGTTGCGACAACAGCATAGGCAGCATGCAGG
*** * * *** *
16553801 GGGGATCGGGTCGATCCCCGGCTTGTACTTTCTGCCTCTCCGATTAGCGGAGT
131 GACAACCGGGTCGATCCCCGACTCACACATTCTGCCTCTCCGATTAGCGGAGT
** * *
16553854 GCCCGCACGTTCGTTTCATTGGTTAACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGG
1 GCCCGCACACTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCAT-CCCAGTCTAAGCATACAG
* * * * *
16553919 AGTTCATTCCCAGCCTAAGATCGAACCAGACCGAGGGTTGC-AGCAATAGGATAGGCAGCATGCA
65 AGTTCATTCCCAGCCTAAGATCAAACCAGACCAAAGGTTGCGA-CAACAGCATAGGCAGCATGCA
* * * *
16553983 GTGACAACCGGG-CTGATCCCCGACTCACACATTCTGCCTCTCCGA-TCGACTGAGC
129 GGGACAACCGGGTC-GATCCCCGACTCACACATTCTGCCTCTCCGATTAG-CGGAGT
* ** * * * *
16554038 GCCCGCACGC-CTGTTTCATGGGTTGGCTTTGGTATAGGGAGTTCATTCCATGTCTAAGC
1 GCCCGCACACTC-GTTTCATGGGTTAACTTAGGCATACGGAGTTCATCCCA-GTCTAAGC
16554097 CCCAGTCGGA
Statistics
Matches: 200, Mismatches: 37, Indels: 11
0.81 0.15 0.04
Matches are distributed among these distances:
183 49 0.25
184 151 0.75
ACGTcount: A:0.22, C:0.28, G:0.26, T:0.24
Consensus pattern (183 bp):
GCCCGCACACTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCATCCCAGTCTAAGCATACAGA
GTTCATTCCCAGCCTAAGATCAAACCAGACCAAAGGTTGCGACAACAGCATAGGCAGCATGCAGG
GACAACCGGGTCGATCCCCGACTCACACATTCTGCCTCTCCGATTAGCGGAGT
Found at i:16555973 original size:159 final size:158
Alignment explanation
Indices: 16555670--16555997 Score: 379
Period size: 159 Copynumber: 2.1 Consensus size: 158
16555660 TAAGCATGCA
* * * * **** *
16555670 GAGTTCATTCCTAGTATAAGATCGGTCTGGACCGAGGGTTGCGGTAGTAGGATTGGTAGCACGCA
1 GAGTTCATTCCTAGTATAAGATCAGACTGGACCGAGGGTTGCGGCAGCAGGATCAACAGCACGAA
* * * * ***
16555735 GGGGGGACCGGGCCAATCCCTGAGTTGTGCATTCTACCTCTCCAGTCGGCTTAGTGTTTGAACGC
66 GGGGGGACCGGGCCAATCCCCGACTTGCGCATTCTACCTCTCCAGTCGGCTGAGTGCCCGAACGC
16555800 TCGTTTCGTAGGTTGACTTACGCATACG
131 TCGTTTCGTAGGTTGACTTACGCATACG
* *
16555828 GAGTTCATTCCTAGTTTAAGATCAGACTGGACCGAGGGTTGTGGCAGCAGGATCAACAGCACGTA
1 GAGTTCATTCCTAGTATAAGATCAGACTGGACCGAGGGTTGCGGCAGCAGGATCAACAGCACG--
* ** * * *
16555893 AAGGGGGG-CTGGGCCGGTCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGTGCCCGTAC
64 AAGGGGGGACCGGGCCAATCCCCGACTTGCGCATTCTACCTCTCCAGTCGGCTGAGTGCCCGAAC
* * *
16555957 GCTCGTTTCGTGGGTTGGCTTAGGCATACG
129 GCTCGTTTCGTAGGTTGACTTACGCATACG
*
16555987 GAGATCATTCC
1 GAGTTCATTCC
16555998 ATGTCTATCC
Statistics
Matches: 140, Mismatches: 28, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
158 53 0.38
159 80 0.57
160 7 0.05
ACGTcount: A:0.18, C:0.24, G:0.32, T:0.26
Consensus pattern (158 bp):
GAGTTCATTCCTAGTATAAGATCAGACTGGACCGAGGGTTGCGGCAGCAGGATCAACAGCACGAA
GGGGGGACCGGGCCAATCCCCGACTTGCGCATTCTACCTCTCCAGTCGGCTGAGTGCCCGAACGC
TCGTTTCGTAGGTTGACTTACGCATACG
Found at i:16556225 original size:25 final size:26
Alignment explanation
Indices: 16556190--16556241 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
16556180 GTTGACTTAG
*
16556190 GCATACGGAGTTCA-TCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16556215 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16556241 G
1 G
16556242 ATCAAATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 13 0.52
26 12 0.48
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16556403 original size:26 final size:26
Alignment explanation
Indices: 16556373--16556425 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16556363 GTTAACTTAG
*
16556373 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
*
16556399 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
16556425 G
1 G
16556426 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGCCTAA
Found at i:16556491 original size:184 final size:183
Alignment explanation
Indices: 16556159--16556584 Score: 446
Period size: 184 Copynumber: 2.3 Consensus size: 183
16556149 CCGACTGAGC
* *
16556159 GCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCAGTCTAAGCATACAGA
1 GCCCGCACACTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCATCCCAGTCTAAGCATACAGA
* * * * *
16556224 GTTCATTCCCAGTCTAAGATCAAATCAGACCAAAGGTTGCGACAGCAGCATCGGTAGCATGCAGG
66 GTTCATTCCCAGCCTAAGATCAAACCAGACCAAAGGTTGCGACAACAGCATAGGCAGCATGCAGG
*** * * *** *
16556289 GGGGATCGGGTCGATCCCCGGCTTGTACTTTCTGCCTCTCCGATTAGCGGAGT
131 GACAACCGGGTCGATCCCCGACTCACACATTCTGCCTCTCCGATTAGCGGAGT
** * *
16556342 GCCCGCACGTTCGTTTCATTGGTTAACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGG
1 GCCCGCACACTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCAT-CCCAGTCTAAGCATACAG
* * * * *
16556407 AGTTCATTCCCAGCCTAAGATCGAACCAGACCGAGGGTTGC-AGCAATAGGATAGGCAGCATGCA
65 AGTTCATTCCCAGCCTAAGATCAAACCAGACCAAAGGTTGCGA-CAACAGCATAGGCAGCATGCA
* * * *
16556471 GTGACAACCGGG-CTGATCCCCGACTCACACATTCTGCCTCTCCGA-TCGACTGAGC
129 GGGACAACCGGGTC-GATCCCCGACTCACACATTCTGCCTCTCCGATTAG-CGGAGT
* ** * * * *
16556526 GCCCGCACGC-CTGTTTCATGGGTTGGCTTTGGTATAGGGAGTTCATTCCATGTCTAAGC
1 GCCCGCACACTC-GTTTCATGGGTTAACTTAGGCATACGGAGTTCATCCCA-GTCTAAGC
16556585 CCCAGTCGGA
Statistics
Matches: 200, Mismatches: 37, Indels: 11
0.81 0.15 0.04
Matches are distributed among these distances:
183 49 0.25
184 151 0.75
ACGTcount: A:0.22, C:0.28, G:0.26, T:0.24
Consensus pattern (183 bp):
GCCCGCACACTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCATCCCAGTCTAAGCATACAGA
GTTCATTCCCAGCCTAAGATCAAACCAGACCAAAGGTTGCGACAACAGCATAGGCAGCATGCAGG
GACAACCGGGTCGATCCCCGACTCACACATTCTGCCTCTCCGATTAGCGGAGT
Found at i:16557832 original size:26 final size:26
Alignment explanation
Indices: 16557781--16557833 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16557771 GTTGGGTTAG
*
16557781 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGCCTAA
*
16557807 GCATACGTAGTTCATTCCCA-GCCTAA
1 GCATACGGAGTTCATT-CCATGCCTAA
16557833 G
1 G
16557834 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGCCTAA
Found at i:16558979 original size:158 final size:157
Alignment explanation
Indices: 16558514--16558994 Score: 443
Period size: 158 Copynumber: 3.0 Consensus size: 157
16558504 GTATAAGGAT
* * * * * *
16558514 TTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTACGGTAACAGGATCGGCAGCACGTAAGG
1 TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGACAGTACGTAGGG
* * ** *
16558579 GGGACCGGGCCATTCCTCGGCTTACGCATTCTGCCTCTTCGGCCGGCTGAGCG-CCTGTACGCCC
66 GGGACCGGGCGA-TCCTCGGCTTACGCATTCTGCCTCTCCGATCGGCTGAGCGCCCT-TACGCTC
* *
16558643 ATTTCATGGGTTGGCTTAGGCATAGGGAG
129 ATTTCGTGGGTTGGCTTAGGCATACGGAG
* ** * * * * *
16558672 TTCATT-CCATGCCTAAGCCCTAG-CCAGACCAAGGGTTGTGGTAGCGGGA-CTAACAGCT-CAT
1 TTCATTCCCA-GTCTAAGATC-AGACCAGACCGAGGGTTGCGGTAGCAGGATC-GACAG-TACGT
* * * * * * * * **
16558733 AGAGGTGGATCAGGCCGATCCTCGGTTTGCGCATTAC-GCCTCTCCAATCGGCTCAGTGCCCGAA
62 AG-GGGGGA-CCGGGCGATCCTCGGCTTACGCATT-CTGCCTCTCCGATCGGCTGAGCGCCCTTA
* * * * *
16558797 CGCTCGTTTCGTGGGTCGACTTAGGAATACAGAG
124 CGCTCATTTCGTGGGTTGGCTTAGGCATACGGAG
** *
16558831 TTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGGTAGCAGGATCGACAGTACGTAGGG
1 TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGACAGTACGTAGGG
* * *
16558896 GGGACCGGGTCGATCCTCGGCTTACGCATTCTGCCTCTCCGATCGGTTGAACGCCCTTATGCTCA
66 GGGACCGGG-CGATCCTCGGCTTACGCATTCTGCCTCTCCGATCGGCTGAGCGCCCTTACGCTCA
*
16558961 TTTCGTGGGTTGGTTTAGGCATACGGAG
130 TTTCGTGGGTTGGCTTAGGCATACGGAG
16558989 TTCATT
1 TTCATT
16558995 TCATGTCCAA
Statistics
Matches: 243, Mismatches: 66, Indels: 28
0.72 0.20 0.08
Matches are distributed among these distances:
157 8 0.03
158 118 0.49
159 105 0.43
160 12 0.05
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (157 bp):
TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGACAGTACGTAGGG
GGGACCGGGCGATCCTCGGCTTACGCATTCTGCCTCTCCGATCGGCTGAGCGCCCTTACGCTCAT
TTCGTGGGTTGGCTTAGGCATACGGAG
Found at i:16559212 original size:26 final size:26
Alignment explanation
Indices: 16559176--16559228 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16559166 GTTGACTTAG
16559176 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
*
16559202 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16559228 G
1 G
16559229 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16559388 original size:26 final size:26
Alignment explanation
Indices: 16559359--16559411 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16559349 GTTGGCTTAG
*
16559359 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
16559385 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
16559411 G
1 G
16559412 AGTTTGTGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:16565751 original size:26 final size:26
Alignment explanation
Indices: 16565722--16565774 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16565712 GTTGACTTAG
*
16565722 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16565748 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16565774 G
1 G
16565775 ATTAGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16566391 original size:185 final size:183
Alignment explanation
Indices: 16566072--16566431 Score: 454
Period size: 185 Copynumber: 2.0 Consensus size: 183
16566062 AGGCATACAA
*
16566072 AGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGATGCAAGATCGATAGCACACAGG
1 AGTTCATTCCCAGTCTAAAATCAGACTGGACCGAGGGTTACGATGCAAGATCGATAGCACACAGG
* * * *
16566137 GGGGACCGAGCCGATCCTAAGCTTACGCATTTTGCCTCTCCAGCTGGCTGAGCGCCCTCACACTC
66 GGGGACCGAGCCGATCCCAAGCTTACGCATTCTGCCTCTCCACCTGGCTGAGCGCCCGCACACTC
* * *
16566202 GTTTCATGGGTTGGCTTAGGCTTACAGGGTTCATTCCATGTCTAAGCATACGG
131 GTTTCATGGGTTAGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGG
* * * * * * *
16566255 AGTTCATTCCTAGTCTAAAATTAGACTAGG-CTGAGGGTTACGGTAGCAGGATCGGTAGCACGCA
1 AGTTCATTCCCAGTCTAAAATCAGACT-GGACCGAGGGTTACGAT-GCAAGATCGATAGCACACA
* ** ** * *
16566319 GGGAGGGACTGAGCCGATCCCCGGCTTGTGCATTCTGCCTCTCCGACCT-GTTGAGTGCCCGCAC
64 GGG-GGGACCGAGCCGATCCCAAGCTTACGCATTCTGCCTCTCC-ACCTGGCTGAGCGCCCGCAC
* *
16566383 GCTCGTTTCGTGGGTTAGCTTAGGCATACAGAGTTCATTCCATGTCTAA
127 ACTCGTTTCATGGGTTAGCTTAGGCATACAGAGTTCATTCCATGTCTAA
16566432 ACCCCAGCCG
Statistics
Matches: 149, Mismatches: 24, Indels: 6
0.83 0.13 0.03
Matches are distributed among these distances:
183 36 0.24
184 21 0.14
185 89 0.60
186 3 0.02
ACGTcount: A:0.21, C:0.26, G:0.27, T:0.26
Consensus pattern (183 bp):
AGTTCATTCCCAGTCTAAAATCAGACTGGACCGAGGGTTACGATGCAAGATCGATAGCACACAGG
GGGGACCGAGCCGATCCCAAGCTTACGCATTCTGCCTCTCCACCTGGCTGAGCGCCCGCACACTC
GTTTCATGGGTTAGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGG
Found at i:16566613 original size:26 final size:26
Alignment explanation
Indices: 16566577--16566629 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16566567 GTTGACTTAG
16566577 GCATACGGAGTTCA-TCACCAGTCTAA
1 GCATACGGAGTTCATTC-CCAGTCTAA
16566603 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16566629 G
1 G
16566630 ATCGAATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16567061 original size:158 final size:156
Alignment explanation
Indices: 16566602--16567105 Score: 482
Period size: 158 Copynumber: 3.2 Consensus size: 156
16566592 CACCAGTCTA
* * * * *
16566602 AGCATACGGAGTTCATTCCCAGTCTAAGATCGAA-TCAGACTGAGGGTTGTGTCAGCAAGATCGG
1 AGCATACGGAGTTCATTCCCAGTCTAAGATCGAACT-GGACCGAGGGTTGCGT-AGCAGGATCGA
* ** * *
16566666 CAGCACGGAGGGGGGACCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCTGCCGGCTGAACG
64 CAGCACGCAGGGGGGACTGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTCAACG
* * *
16566731 CCCGCATGCCCATTTCGTGGGTTGGCTT
129 CCCGCACGCCCGTTTCATGGGTTGGCTT
* ** * * * * *
16566759 AGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAACCGGACCGA-GGTTGTGGCAGCAGGACCG
1 A-GCATACGGAGTTCATTCCCA-GTCTAAGATCGAACTGGACCGAGGGTTG-CGTAGCAGGATCG
* *
16566822 ACAGCACGCAGAGGGGGA-TCGGGCCGATCCTCGGCTTGCGCATTATGCCTC-CTCGGCCGGCTC
63 ACAGCACGCAG-GGGGGACT-GGGCCGATCCCCGGCTTGCGCATTCTGCCTCTC-CGGCCGGCTC
* * *
16566885 AATGCCCGCACGCGCGTTTCATGGGTTGACTT
125 AACGCCCGCACGCCCGTTTCATGGGTTGGCTT
16566917 ATGCATACGGAGTTCATTCCCTA-TCTAAGATCGAACTGGACCGAGGGTTGCGTAGCAGGATCGA
1 A-GCATACGGAGTTCATTCCC-AGTCTAAGATCGAACTGGACCGAGGGTTGCGTAGCAGGATCGA
** * * * * *
16566981 CAGCACATAGGGGGAGACTGGGCCGATCCCCGACATGCGCGTTCTGCCTCTCCGGTCAGCT-AAG
64 CAGCACGCAGGGGG-GACTGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTCAA-
* *** *
16567045 CGCCCACACATTCGTTTTATGGGTTGGCTT
127 CGCCCGCACGCCCGTTTCATGGGTTGGCTT
* *
16567075 AGGAGTACGGAGTTCGTTCCCAGTCTAAGAT
1 AGCA-TACGGAGTTCATTCCCAGTCTAAGAT
16567106 TTTGAGCCAC
Statistics
Matches: 279, Mismatches: 52, Indels: 31
0.77 0.14 0.09
Matches are distributed among these distances:
157 36 0.13
158 233 0.84
159 9 0.03
160 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (156 bp):
AGCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTGCGTAGCAGGATCGACA
GCACGCAGGGGGGACTGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCGGCTCAACGCC
CGCACGCCCGTTTCATGGGTTGGCTT
Found at i:16567801 original size:26 final size:26
Alignment explanation
Indices: 16567765--16567817 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16567755 GTTGACTTAG
16567765 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
*
16567791 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
16567817 G
1 G
16567818 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:16569295 original size:26 final size:26
Alignment explanation
Indices: 16569258--16569310 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16569248 GTTGGCTTAG
*
16569258 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
16569284 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16569310 G
1 G
16569311 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16569422 original size:13 final size:13
Alignment explanation
Indices: 16569404--16569443 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
16569394 ACGCATTCTG
*
16569404 CCTCTCTGGCCTA
1 CCTCTCTGGCCGA
*
16569417 CCTCTCTGGCCGG
1 CCTCTCTGGCCGA
*
16569430 CCTCTCTGACCGA
1 CCTCTCTGGCCGA
16569443 C
1 C
16569444 TGAGCACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.07, C:0.47, G:0.20, T:0.25
Consensus pattern (13 bp):
CCTCTCTGGCCGA
Found at i:16569516 original size:26 final size:26
Alignment explanation
Indices: 16569480--16569532 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16569470 GTTAACTTAG
*
16569480 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
16569506 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
16569532 G
1 G
16569533 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:16569851 original size:26 final size:26
Alignment explanation
Indices: 16569822--16569874 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16569812 GTTGGCTTAG
**
16569822 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16569848 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16569874 G
1 G
16569875 ATCAGACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16570429 original size:159 final size:156
Alignment explanation
Indices: 16570044--16570546 Score: 483
Period size: 159 Copynumber: 3.2 Consensus size: 156
16570034 CCCAATCTGA
* * * *
16570044 GCATACAGAGTTCATTCCCAGTCTAAGATTAGATCAGACCGAGGGTTGCGGCAGCAAGATC-AAT
1 GCATACGGAGTTCATT-CCAGTCTAAGATTAGACCAGACCGAGGGTTGTGGCAGCAGGATCGAA-
*
16570108 AGCACGCAGGGGGGACCGGGTCGAT-CCCTGACTTGTGCATTCTGCCTCTCCGGCCGATTGAGCA
64 AGCACGCAGGGGGGACCGGGTCGATCCCCAG-CTTGTGCATTCTGCCTCTCCGGCCG-TTGAGCA
* * *
16570172 CCTGCACACCCGTTTCATGGGTTGGCTTAG
127 CCTGCACGCTCGTTTCGTGGGTTGGCTTAG
* * *** * *** *
16570202 GCATAGGGAGTTAATTCCATGTCTAAGCCCCA-ACCAGACCGAGGGTTATGGCAATGGGA-CTGG
1 GCATACGGAGTTCATTCCA-GTCTAAG-ATTAGACCAGACCGAGGGTTGTGGCAGCAGGATC-GA
* ** * * * *
16570265 CAGCACGCAGAGGGTTACCGGGTCGATCCCCAGCTTGTGCATTATGCCTCTTCGGCCTGCTCAGC
63 AAGCACGCAG-GGGGGACCGGGTCGATCCCCAGCTTGTGCATTCTGCCTCTCCGGCC-GTTGAGC
* * * *
16570330 GCCTGAATGCTCGTTTCGTGGGTTGACTTAG
126 ACCTGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * *
16570361 GCATACGGAGTTCATTCCTAGACTAAGATTGGACCAGATCGAGGGTTGTGGTAGCAGGATCGAAA
1 GCATACGGAGTTCATTCC-AGTCTAAGATTAGACCAGACCGAGGGTTGTGGCAGCAGGATCGAAA
* * * * * **
16570426 GCACACAGGGGGGGACTGAGTCGATCCCCGGCTTGTGCATTCTGCCTATCCAACCGGTTGAGCAC
65 GCACGCA-GGGGGGACCGGGTCGATCCCCAGCTTGTGCATTCTGCCTCTCCGGCC-GTTGAGCAC
*
16570491 CCGCACGCTCGTTTCGTGGGTTGGCTTAG
128 CTGCACGCTCGTTTCGTGGGTTGGCTTAG
*
16570520 GTATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCA-GTCTAAG
16570547 CATGCGGAGT
Statistics
Matches: 268, Mismatches: 65, Indels: 23
0.75 0.18 0.06
Matches are distributed among these distances:
157 4 0.01
158 50 0.19
159 206 0.77
160 8 0.03
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCAGTCTAAGATTAGACCAGACCGAGGGTTGTGGCAGCAGGATCGAAAG
CACGCAGGGGGGACCGGGTCGATCCCCAGCTTGTGCATTCTGCCTCTCCGGCCGTTGAGCACCTG
CACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:16571255 original size:26 final size:26
Alignment explanation
Indices: 16571225--16571277 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16571215 CATGGGTTAG
**
16571225 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16571251 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16571277 G
1 G
16571278 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16571978 original size:26 final size:26
Alignment explanation
Indices: 16571948--16572000 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16571938 GTTGACTTAG
16571948 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
16571974 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
16572000 G
1 G
16572001 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:16572522 original size:26 final size:26
Alignment explanation
Indices: 16572486--16572538 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16572476 GTTGACTTAT
16572486 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
16572512 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16572538 G
1 G
16572539 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16572557 original size:195 final size:196
Alignment explanation
Indices: 16572192--16572558 Score: 474
Period size: 195 Copynumber: 1.9 Consensus size: 196
16572182 GTAGTGGGAC
* * **
16572192 CGACAGCATGCAAAGTGGGATTGGGTCGATCCTCGGCTTGCGTATTCTGCCTCTCCGATCGACTG
1 CGACAGCACGCAAAGTGGGATCGGGTCGATCCTCGGCTTGCG-ATTCTGCCTCTCCGATCGACCC
* * * * *
16572257 AGCGCCCGCACGCTCATTTCATGGGTTGGCTTAGGGATACGGAGTTCATTCCATGTCTAAGCATA
65 AGCACCCGCACGATCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAAGCATA
* * * * * *
16572322 TGGAGTTCATTCCCAGTCTAAGATTGGATCGGATCGAGGGTTACGGTAGCAAGACCAGCAGCAGG
130 CGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGGTAGCAAGACCAGCAGCAGG
16572387 AT
195 AT
* *
16572389 CGACAGCACGC-AAG-GGGATCGGGTCGATCCTCGGCCTATGC-ATTCTGCCTCTCTG-TCTGGC
1 CGACAGCACGCAAAGTGGGATCGGGTCGATCCTCGG-CT-TGCGATTCTGCCTCTCCGATC-GAC
* *
16572450 CCAGCACCCGCACGATCATTTCGTGGGTTGACTTATGCATACGGAGTTCATCCCCA-GTCTAAGC
63 CCAGCACCCGCACGATCATTTCATGGGTTGACTTAGGCATACGGAGTTCAT-CCCATGTCTAAGC
*
16572514 ATACGGAGTTCATTCTCAGTCTAAGATCGAACCAGACCGAGGGTT
127 ATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTT
16572559 GTGGAAGCAG
Statistics
Matches: 146, Mismatches: 20, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
194 2 0.01
195 123 0.84
196 8 0.05
197 13 0.09
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.25
Consensus pattern (196 bp):
CGACAGCACGCAAAGTGGGATCGGGTCGATCCTCGGCTTGCGATTCTGCCTCTCCGATCGACCCA
GCACCCGCACGATCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAAGCATAC
GGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGGTAGCAAGACCAGCAGCAGGA
T
Found at i:16572801 original size:158 final size:158
Alignment explanation
Indices: 16572512--16572855 Score: 386
Period size: 158 Copynumber: 2.2 Consensus size: 158
16572502 CCCAGTCTAA
** * *
16572512 GCATACGGAGTTCATTCTCA-GTCTAAGATCGAACCAGACCGAGGGTTGTGGAAGCAGGATCAGT
1 GCATACGGAGTTCATTC-CATGTCTAAGCCCCAACCAGACCGAGGGTTGTGGAAGCAGGACCAGT
* * ** *
16572576 AGCACGCAAGGGGGATCGAGCCGATCCCCAGCTTGTGCATTCTACCTCTCTGGTCGGCTGAGAGC
65 AGCACGCAAGGGGGACCGAGCCGATCCCCAGCTTGCGCATTCTACCTCTCTGACCGACTGAGAGC
* * *
16572641 CCGCATGCCCGTTTTGTGGGTTGGATTAG
130 CCGCACGCCCGATTCGTGGGTTGGATTAG
* * * * * *
16572670 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACTGAGGGTTGTGGTAGCGGGACCGGTA
1 GCATACGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGTGGAAGCAGGACCAGTA
* ** * * * *
16572735 GCACGCAGAGGGGGACCGGGTTGGTCCCCGGCTTGCGCATTCTGCCTCTC-GACCGACTGAGCGC
66 GCACGCA-AGGGGGACCGAGCCGATCCCCAGCTTGCGCATTCTACCTCTCTGACCGACTGAGAGC
* *
16572799 CCGCACGCTCGATTCGTGGGTTGGCTTAG
130 CCGCACGCCCGATTCGTGGGTTGGATTAG
* * *
16572828 GCATATGGAGTTCATTCCTTTTCTAAGC
1 GCATACGGAGTTCATTCCATGTCTAAGC
16572856 ATACGGAGTT
Statistics
Matches: 154, Mismatches: 30, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
157 2 0.01
158 118 0.77
159 34 0.22
ACGTcount: A:0.19, C:0.26, G:0.32, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGCCCCAACCAGACCGAGGGTTGTGGAAGCAGGACCAGTA
GCACGCAAGGGGGACCGAGCCGATCCCCAGCTTGCGCATTCTACCTCTCTGACCGACTGAGAGCC
CGCACGCCCGATTCGTGGGTTGGATTAG
Found at i:16572878 original size:26 final size:26
Alignment explanation
Indices: 16572828--16572880 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16572818 GTTGGCTTAG
* ***
16572828 GCATATGGAGTTCATTCCTTTTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16572854 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16572880 G
1 G
16572881 AGTTTGAGCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.34
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16573963 original size:159 final size:158
Alignment explanation
Indices: 16573585--16573978 Score: 366
Period size: 159 Copynumber: 2.5 Consensus size: 158
16573575 AACCATATGA
* *
16573585 AGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGTAAGCAGGATCGACAACACGCA
1 AGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGT-AGTAGGATCGACAGCACGCA
* * * * * * *
16573650 GGGGGGATCGGGCCGATCTCCAACTAGCGCATTCTACCTCTTCAATTCGGCAGAGTGCCCGCAAC
65 GGGGGGACCGGGCCGATCCCCAACTAGCGCATTATACCACTCCAACTCGACAGAGTGCCCGCAAC
*
16573715 CCATTTCGTGGGTTGGCTTAGGCATAGGG
130 CCATTTCGTGGGTTGACTTAGGCATAGGG
** ** * * * * * * *
16573744 AGTTCATT-CCATGTCTAAGCCCCAACCGGA-CTGAGGCTTGTGGCAATGGGACCGACAGCACAC
1 AGTTCATTCCCA-GTCTAAGATCGGACCGGATC-GAGGGTTGCGGTAGTAGGATCGACAGCACGC
* * * ** ** *
16573807 AGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCACTCCGGCT-GACTTAGTG-CC-TA
64 AG-GGGGGACCGGGCCGATCCCCAACTAGCGCATTATACCACTCCAACTCGACAGAGTGCCCGCA
* *
16573869 AGCGCTCATTTCGTGGGTTGACTTAGGCATTGGT
128 A-C-C-CATTTCGTGGGTTGACTTAGGCATAGGG
* * *
16573903 AGTTCTTTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGATAGTAGGATCGATAGCACGCAG
1 AGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGTAGTAGGATCGACAGCACGCAG
* *
16573968 TGGGGATCGGG
66 GGGGGACCGGG
16573979 TTGGTCCCTG
Statistics
Matches: 180, Mismatches: 47, Indels: 17
0.74 0.19 0.07
Matches are distributed among these distances:
156 2 0.01
157 3 0.02
158 35 0.19
159 136 0.76
160 4 0.02
ACGTcount: A:0.21, C:0.26, G:0.31, T:0.22
Consensus pattern (158 bp):
AGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGTAGTAGGATCGACAGCACGCAG
GGGGGACCGGGCCGATCCCCAACTAGCGCATTATACCACTCCAACTCGACAGAGTGCCCGCAACC
CATTTCGTGGGTTGACTTAGGCATAGGG
Found at i:16574089 original size:26 final size:26
Alignment explanation
Indices: 16574053--16574105 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16574043 GTTAGCTTAG
16574053 GCATACAGAGTTCAGT-CCATGTCTAA
1 GCATACAGAGTTCAGTCCCA-GTCTAA
*
16574079 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCAGTCCCAGTCTAA
16574105 G
1 G
16574106 ATCAGGCCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCAGTCCCAGTCTAA
Found at i:16574476 original size:26 final size:26
Alignment explanation
Indices: 16574446--16574498 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16574436 GTTGGCTTAG
* *
16574446 GCATACGTAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCAATCCTA-GTCTAA
16574472 GCATACGGAGTTCAATCCTAGTCTAA
1 GCATACGGAGTTCAATCCTAGTCTAA
16574498 G
1 G
16574499 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCTAGTCTAA
Found at i:16574678 original size:26 final size:26
Alignment explanation
Indices: 16574642--16574694 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16574632 GTTGACTTAG
16574642 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
16574668 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16574694 G
1 G
16574695 ATAGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16574997 original size:159 final size:158
Alignment explanation
Indices: 16574725--16575011 Score: 344
Period size: 159 Copynumber: 1.8 Consensus size: 158
16574715 ACGACAGTAA
* * *
16574725 GATCGGCAGCACGTAGGGGGGACCAGGTCGATCCCCGGCTTACGCATTCTGCCTCTTCGGCTGGC
1 GATCGGCAGCACGTAAGGGGGACCAGGCCGATCCCCGGCTTACGCATTATGCCTCTTCGGCTGGC
* * * * * * *
16574790 TGAGCGCCCGCACGCCCGTTTCATAGGTTGGCTTAGGCAGAGGGAGTTCACT-CCATGTCTAAGC
66 TCAGCACCCGAACGCCCATTTCATAGGTTGACTTAGGCAGACGAAGTTCACTCCCA-GTCTAAGC
16574854 CCCAGTCGGACCGAGGGTTATGGCAGCGC
130 CCCAGTCGGACCGAGGGTTATGGCAGCGC
* * * * *
16574883 GATCGGCAGCACGTAAAGGGGGACCGGGCCGATCCCTGGCTTGCGCGTTATGCCTCTTC-GATCG
1 GATCGGCAGCACGT-AAGGGGGACCAGGCCGATCCCCGGCTTACGCATTATGCCTCTTCGGCT-G
* * * * * *
16574947 GCTCAGCACCCGAACGCTCATTTCGTGGGTTGACTTAGGTATACGAAGTTCATTCCCAGTCTAAG
64 GCTCAGCACCCGAACGCCCATTTCATAGGTTGACTTAGGCAGACGAAGTTCACTCCCAGTCTAAG
16575012 ATCAGACCAA
Statistics
Matches: 105, Mismatches: 21, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
158 16 0.15
159 86 0.82
160 3 0.03
ACGTcount: A:0.18, C:0.29, G:0.31, T:0.22
Consensus pattern (158 bp):
GATCGGCAGCACGTAAGGGGGACCAGGCCGATCCCCGGCTTACGCATTATGCCTCTTCGGCTGGC
TCAGCACCCGAACGCCCATTTCATAGGTTGACTTAGGCAGACGAAGTTCACTCCCAGTCTAAGCC
CCAGTCGGACCGAGGGTTATGGCAGCGC
Found at i:16575028 original size:159 final size:158
Alignment explanation
Indices: 16574668--16575169 Score: 390
Period size: 158 Copynumber: 3.2 Consensus size: 158
16574658 CCCAGTCTAA
*
16574668 GCATACGGAGTTCATTCCCAGTCTAAGAT-AGGACCGAATCGAGGGTTACGACAGTAAGATCGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCA-GACCGAATCGAGGGTTACGACAGCAAGATCGGC
* * * * *
16574732 AGCACGTAGGGGGGACCAGGTCGATCCCCGGCTTACGCATTCTGCCTCTTCGGCTGGCTGAGCGC
65 AGCACGTAAGGGGGACCAGGCCGATCCCCGGCTTACGCATTATGCCTCTTCGGCTGGCTCAGCAC
* * *
16574797 CCGCACGCCCGTTTCATAGGTTGGCTTAG
130 CCGAACGCCCATTTCATAGGTTGACTTAG
* * * ** * * * * * **
16574826 GCAGAGGGAGTTCACT-CCATGTCTAAGCCCCAG-TCGGACCGAGGGTTATGGCAGCGCGATCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGAATCGAGGGTTACGACAGCAAGATCGG
* * * * *
16574889 CAGCACGTAAAGGGGGACCGGGCCGATCCCTGGCTTGCGCGTTATGCCTCTTC-GATCGGCTCAG
64 CAGCACGT-AAGGGGGACCAGGCCGATCCCCGGCTTACGCATTATGCCTCTTCGGCT-GGCTCAG
* * *
16574953 CACCCGAACGCTCATTTCGTGGGTTGACTTAG
127 CACCCGAACGCCCATTTCATAGGTTGACTTAG
* * * * * **
16574985 GTATACGAAGTTCATTCCCAGTCTAAGATCAGACCAAATCGA-GGTTGCGACAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAGGGTTACGACAGCAAGATCGGCA
** ** * * * * * *
16575049 GCACGTCGGGAGGGACC-GGGTGAATCCCCGGCTTGCGCATTCTACCTC-TCTGGCCGGTTGAGC
66 GCACGTAAGG-GGGACCAGGCCG-ATCCCCGGCTTACGCATTATGCCTCTTC-GGCTGGCTCAGC
* * * * * * *
16575112 ACCTGCACGCTCGTTTCGTGGGTTGGCTTAG
128 ACCCGAACGCCCATTTCATAGGTTGACTTAG
16575143 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
16575170 CATATGGAGT
Statistics
Matches: 267, Mismatches: 65, Indels: 24
0.75 0.18 0.07
Matches are distributed among these distances:
157 13 0.05
158 157 0.59
159 93 0.35
160 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAGGGTTACGACAGCAAGATCGGCA
GCACGTAAGGGGGACCAGGCCGATCCCCGGCTTACGCATTATGCCTCTTCGGCTGGCTCAGCACC
CGAACGCCCATTTCATAGGTTGACTTAG
Found at i:16575342 original size:26 final size:26
Alignment explanation
Indices: 16575304--16575356 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16575294 GTTGACTTAG
*
16575304 GCATACGGGGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
16575330 GCATATGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16575356 G
1 G
16575357 ATTAGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16575640 original size:159 final size:158
Alignment explanation
Indices: 16575388--16575674 Score: 394
Period size: 159 Copynumber: 1.8 Consensus size: 158
16575378 CGACAGCAAT
* ** * * *
16575388 ATCGATAGCACGCAGGGTGGACCGGGCCGATCCCCGACTTGTGCATTCTGCCTCTCTGGCCGACT
1 ATCGATAGCACGCAGGGGGGACCGGGCCGATCCCCGACTTACGCATTCTACCTCTCCGACCGACT
* * * * *
16575453 GAGCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC
66 GAGCACCCGCACACCCATTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC
16575518 CAGTCGGACCGAGGGTTGTGGCAGCCAA
131 CAGTCGGACCGAGGGTTGTGGCAGCCAA
* * ** *
16575546 ATCGATAGCACGTAGAGGGGGATCGGGTTGATCCCCGACTTACGCATTCTACCTCTCCGACCGGC
1 ATCGATAGCACGCAG-GGGGGACCGGGCCGATCCCCGACTTACGCATTCTACCTCTCCGACCGAC
* * *
16575611 TGAGCACCTGTACACTCATTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
65 TGAGCACCCGCACACCCATTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
16575675 ATATGGAGTT
Statistics
Matches: 109, Mismatches: 19, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
158 14 0.13
159 95 0.87
ACGTcount: A:0.18, C:0.29, G:0.29, T:0.24
Consensus pattern (158 bp):
ATCGATAGCACGCAGGGGGGACCGGGCCGATCCCCGACTTACGCATTCTACCTCTCCGACCGACT
GAGCACCCGCACACCCATTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC
CAGTCGGACCGAGGGTTGTGGCAGCCAA
Found at i:16575683 original size:26 final size:26
Alignment explanation
Indices: 16575647--16575725 Score: 133
Period size: 26 Copynumber: 3.0 Consensus size: 26
16575637 GTTGGCTTAG
16575647 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
16575673 GCATATGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
16575699 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
16575725 G
1 G
16575726 ATCGAAATGG
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
26 47 0.94
27 3 0.06
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:16576366 original size:26 final size:26
Alignment explanation
Indices: 16576336--16576388 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16576326 GTTGACTTAC
16576336 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
16576362 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
16576388 G
1 G
16576389 ATCATACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:16576782 original size:158 final size:158
Alignment explanation
Indices: 16576369--16576806 Score: 463
Period size: 158 Copynumber: 2.8 Consensus size: 158
16576359 TAAGCATATG
* * * *
16576369 GAGTTCATTCCCAGTCTAAGATCATACCGAACCGAAGGTTGCGGCAGCAGGATCGACAGCACGCA
1 GAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTA
* * * * * * *
16576434 GGGGGCA-CTGAGTCGATCCCCGACTTGCGCATTCTGCCTCTTCGGTCGGTTGAGCGCCCGTATG
66 GGGGGGATC-GGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTCAGCGCCCGAACG
**
16576498 CCCGTTTCATGGGTTGGCTTAGGCATACA
130 CCCGTTTCATGGGTTAACTTAGGCATACA
** * * * * *
16576527 GAGTTCATT-CCATGTCTAAGCCCCAG-TCGGACCGAGAGTTGTGGCAGCGGGA-CTAACAGCAC
1 GAGTTCATTCCCA-GTCTAAG-ATCAGATCGAACCGAGGGTTGCGGCAGCAGGATC-GACAGCAC
* * * *
16576589 GTAGAGAGGGATC-GGTCGATCCCCGACTTGTGCATTATGCCTCTCCGGTCGGCTCAGTGCCCGA
63 GTAG-GGGGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTCAGCGCCCGA
* *
16576653 ACGCTCGTTTCGTGGGTTAACTTAGGCATACA
127 ACGCCCGTTTCATGGGTTAACTTAGGCATACA
* * * *
16576685 GAGTTCATTCCCAATCTAAGATCAGATCAAACCGAGGGTTACGGTAGCAGGATCGACAGCACGTA
1 GAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTA
* * ** * * *
16576750 GGGGGGATCGGGCCGGTCCTTGGCTTGCGCATTCTGCCTCTCCGGTTGGCTGAGCGC
66 GGGGGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTCAGCGC
16576807 TCGTGGGTTG
Statistics
Matches: 223, Mismatches: 48, Indels: 18
0.77 0.17 0.06
Matches are distributed among these distances:
157 14 0.06
158 198 0.89
159 10 0.04
160 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTTGCGGCAGCAGGATCGACAGCACGTA
GGGGGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTCAGCGCCCGAACGC
CCGTTTCATGGGTTAACTTAGGCATACA
Found at i:16577052 original size:26 final size:26
Alignment explanation
Indices: 16577022--16577072 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16577012 TTACTTAGGA
*
16577022 ATACGGAGTTCATCCCCAGTCTAAGC
1 ATACGGAGCTCATCCCCAGTCTAAGC
*
16577048 ATACGGAGCTCATTCCCAGTCTAAG
1 ATACGGAGCTCATCCCCAGTCTAAG
16577073 ATCGGACTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (26 bp):
ATACGGAGCTCATCCCCAGTCTAAGC
Found at i:16577595 original size:26 final size:26
Alignment explanation
Indices: 16577558--16577610 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16577548 ATTGGCTTAG
*
16577558 GCATACGTAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
16577584 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
16577610 G
1 G
16577611 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:16578437 original size:26 final size:26
Alignment explanation
Indices: 16578399--16578452 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
16578389 TGGGTTGACT
*
16578399 TAGGCATATGGAGTTCATCCCCAGTC
1 TAGGCATACGGAGTTCATCCCCAGTC
* *
16578425 TAGGTATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATCCCCAGTC
16578451 TA
1 TA
16578453 AGATCGAACT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATCCCCAGTC
Found at i:16580351 original size:26 final size:26
Alignment explanation
Indices: 16580321--16580373 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16580311 GTTGACTTAG
*
16580321 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
16580347 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
16580373 G
1 G
16580374 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:16581067 original size:26 final size:26
Alignment explanation
Indices: 16581018--16581069 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16581008 TTGACTTAGT
*
16581018 CATACGGAGTTCATCACCATTCTAAG
1 CATACGGAGTTCATCACCAATCTAAG
*
16581044 CATATGGAGTTCATTC-CCAATCTAAG
1 CATACGGAGTTCA-TCACCAATCTAAG
16581070 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATCACCAATCTAAG
Found at i:16581562 original size:26 final size:26
Alignment explanation
Indices: 16581513--16581564 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16581503 TTGACTTAGT
* *
16581513 CATACGGAGTTCATCCGCAGTCTAAG
1 CATACGGAGTTCATCCACAATCTAAG
*
16581539 CATACGGAGTTCATTCACAATCTAAG
1 CATACGGAGTTCATCCACAATCTAAG
16581565 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (26 bp):
CATACGGAGTTCATCCACAATCTAAG
Found at i:16581773 original size:501 final size:495
Alignment explanation
Indices: 16580947--16581871 Score: 1239
Period size: 501 Copynumber: 1.9 Consensus size: 495
16580937 ACCAGGCCGA
* * *
16580947 TCCTCGGCTTACGTATTCTGCCTCTCCGACCGGTTGAGCGCCCGCACGCTCATTTCATGGGTTGA
1 TCCTCGGCTTACGCATTCTGCCTCTCCGACCGGCTGAACGCCCGCACGCTCATTTCATGGGTTGA
* * *
16581012 CTTAGTCATACGGAGTTCATCACCATTCTAAGCATATGGAGTTCATTCCCAATCTAAGATCAGAC
66 CTTAGTCATACGGAGTTCATCACCAGTCTAAGCATACGGAGTTCATTCACAATCTAAGATCAGAC
* * * * *
16581077 CGGGGGTTACGACAGCAGGATCGACAGCACGCAAGGGGATCGTGTTGATCCCCGGCTTGCACATT
131 CGAGGGTTACGACAGCAGCATCGACAGCACACAAGGGGACCGTGTCGATCCCCGGCTTGCACATT
* * * *
16581142 CTGCCTCTCTGACCGGCTGAGCGCCCACACGCCCGTTTCGTGGGTTGGCTTAGGTGTAGGGAGTT
196 CTGCCTCTCCGACCGACTGAGCGCCCACACGCCCGTTTCGTGAGTTGGCTTAGGTATAGGGAGTT
** * **
16581207 CATTCCATGTCTAAGCCCCAGCTGGACTAAGGTTTGTGGCAGCGGGACCGGCAGCACGTAGAGGG
261 CATTCCATGTCTAAGCCCCAGCCAGACTAAGGGTTGTGGCAGCGGGACCGGCAGCACACAGAGGG
* * * ** *** *
16581272 GGACTAGGTCGATCCCCGGCTTGTGCATTATGCCTCTCCGGTTGGCTCAGCGCCCGAACGCTCGT
326 GGACCAGGCCGATCCCCAGCTTGCACATTATGCCTCTCCGACCGGCTCAGCACCCGAACGCTCGT
16581337 TTCATGGGTTAACTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAAACCGAACCAAGGGTTA
391 TTCATGGGTTAACTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAAACCGAACCAAGGGTTA
16581402 TGACAGCAGGATCGACAACACGCAGGGGGGATCGGATCGG
456 TGACAGCAGGATCGACAACACGCAGGGGGGATCGGATCGG
* * ** **
16581442 TCCTCGGCTTATGCATTCTGCCTCTTCGGTCGGCTGAACGCCCGCACGCTCATTTTGTGGGTTGA
1 TCCTCGGCTTACGCATTCTGCCTCTCCGACCGGCTGAACGCCCGCACGCTCATTTCATGGGTTGA
16581507 CTTAGTCATACGGAGTTCATC-CGCAGTCTAAGCATACGGAGTTCATTCACAATCTAAGATCAGA
66 CTTAGTCATACGGAGTTCATCAC-CAGTCTAAGCATACGGAGTTCATTCACAATCTAAGATCAGA
* * * *
16581571 TCGGATCGAGGGTTGCGGCAGCAGCATC-AGCAGCACACAGGGGGGACCAGT-TCGATCCCCTGC
130 -C----CGAGGGTTACGACAGCAGCATCGA-CAGCACACA-AGGGGACC-GTGTCGATCCCCGGC
* * ** * *
16581634 TTGCGCATTCTGCCTCTCCGATCGACTGAGCGCCTGCACGCCCGTTTTGTTAGTTGGCTTAGGTA
187 TTGCACATTCTGCCTCTCCGACCGACTGAGCGCCCACACGCCCGTTTCGTGAGTTGGCTTAGGTA
*
16581699 TAGGGAGTTCATTCCATGTCTAAGCCCC-GACCAGAC-AGAGGGTTGTGGCAGTGGGACCGGCAG
252 TAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGACTA-AGGGTTGTGGCAGCGGGACCGGCAG
* *
16581762 CACACAGAGGGGGACCAGGCCGATCCCCAGCTTGCACATTCTGCCTCTCCGACCGGCTGAGCACC
315 CACACAGAGGGGGACCAGGCCGATCCCCAGCTTGCACATTATGCCTCTCCGACCGGCTCAGCACC
* * ** *
16581827 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTC
380 CGAACGCTCGTTTCATGGGTTAACTTAGGCATACAGAGTTCATTC
16581872 TGTGTCTAAA
Statistics
Matches: 366, Mismatches: 53, Indels: 16
0.84 0.12 0.04
Matches are distributed among these distances:
494 1 0.00
495 115 0.31
496 1 0.00
499 1 0.00
500 28 0.08
501 218 0.60
502 2 0.01
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.24
Consensus pattern (495 bp):
TCCTCGGCTTACGCATTCTGCCTCTCCGACCGGCTGAACGCCCGCACGCTCATTTCATGGGTTGA
CTTAGTCATACGGAGTTCATCACCAGTCTAAGCATACGGAGTTCATTCACAATCTAAGATCAGAC
CGAGGGTTACGACAGCAGCATCGACAGCACACAAGGGGACCGTGTCGATCCCCGGCTTGCACATT
CTGCCTCTCCGACCGACTGAGCGCCCACACGCCCGTTTCGTGAGTTGGCTTAGGTATAGGGAGTT
CATTCCATGTCTAAGCCCCAGCCAGACTAAGGGTTGTGGCAGCGGGACCGGCAGCACACAGAGGG
GGACCAGGCCGATCCCCAGCTTGCACATTATGCCTCTCCGACCGGCTCAGCACCCGAACGCTCGT
TTCATGGGTTAACTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAAACCGAACCAAGGGTTA
TGACAGCAGGATCGACAACACGCAGGGGGGATCGGATCGG
Found at i:16581904 original size:26 final size:26
Alignment explanation
Indices: 16581856--16581906 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
16581846 TTGGCTTAGG
***
16581856 CATACGGAGTTCATTCTGTGTCTAAA
1 CATACGGAGTTCATTCCCAGTCTAAA
16581882 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
16581907 GAGTTTGAGC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAA
Found at i:16582604 original size:26 final size:26
Alignment explanation
Indices: 16582574--16582626 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
16582564 GTTGACTTAG
16582574 GCATAC-AGAGTTC-ATCACCAGTCTAA
1 GCATACGA-AGTTCAATC-CCAGTCTAA
*
16582600 GCATACGAAGTTCAATCCTAGTCTAA
1 GCATACGAAGTTCAATCCCAGTCTAA
16582626 G
1 G
16582627 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCAATCCCAGTCTAA
Found at i:16583102 original size:26 final size:26
Alignment explanation
Indices: 16583072--16583124 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16583062 GTTGGCTTAG
16583072 GCATACAAAGTTCATT-CCATGTCTAA
1 GCATACAAAGTTCATTCCCA-GTCTAA
**
16583098 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
16583124 G
1 G
16583125 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:16584021 original size:26 final size:26
Alignment explanation
Indices: 16583985--16584037 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16583975 GTTGGCTTAG
*
16583985 GCATATGGAGTTCA-TCCCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16584011 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16584037 G
1 G
16584038 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16584219 original size:26 final size:26
Alignment explanation
Indices: 16584168--16584221 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
16584158 TGGGTTGACT
*
16584168 TAGGCATACAGAGTTCATCCAGAGTC
1 TAGGCATACAGAGTTCATCCACAGTC
*
16584194 TAGGCATACGGAGTTCATTCC-CAGTC
1 TAGGCATACAGAGTTCA-TCCACAGTC
16584220 TA
1 TA
16584222 AGATCAAATC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26
Consensus pattern (26 bp):
TAGGCATACAGAGTTCATCCACAGTC
Found at i:16584936 original size:26 final size:26
Alignment explanation
Indices: 16584907--16584959 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16584897 GTTGACTTAG
16584907 GCATAC-AGAGTTCATCCCCAGTCTAA
1 GCATACGA-AGTTCATCCCCAGTCTAA
*
16584933 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
16584959 G
1 G
16584960 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:16585406 original size:158 final size:158
Alignment explanation
Indices: 16584933--16585593 Score: 567
Period size: 159 Copynumber: 4.2 Consensus size: 158
16584923 CCCAGTCTAA
* * * * *** * *
16584933 GCATACGAAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCAACAGCAGAATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCA
* ** *
16584998 GCACGCA-GGGGGACCGGGCCGATCCCCGACTTGCGCATTCTGCCTCTCTGATCGACTGAGCGCC
66 GCACGCAGGGGGGACCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCCACCGACTGAGCGCC
*
16585062 CGCACGCTCGTATCGTGGGTTGGCTTAG
131 CGCACGCTCGTTTCGTGGGTTGGCTTAG
* * ** * * * * * **
16585090 GCATAGGGAGTTCATT-CCATGTCTATGCCCTAG-CTAGACTGTGGGTTGTGGCAGCGGGACCTA
1 GCATACGGAGTTCATTCCCA-GTCTAAGATC-AGACCAGACCGAGGGTTGTGGCAGCAGGATCGG
* * * ** * * * * *
16585153 CAGCACGTAGAGGGGGATCAAGCCGATCATCGGCTTGCACATTATGCCTCT-CCATCCGGCTCAG
64 CAGCACGCAG-GGGGGACCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCCA-CCGACTGAG
* * *
16585217 TGCCCGAACGCTCGTTTCGTGGGTTGACTTAG
127 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *
16585249 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGTAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCA
* * * *
16585314 ACACGCAGGGGGGACCAGGTCGGTCCCCGACTTGCGTATTCTGCCTCTCCCACCGACTGAGCGCC
66 GCACGCAGGGGGGACCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCCACCGACTGAGCGCC
*
16585379 TGCACGCTCGTTTCGTGGGTTGGCTTAG
131 CGCACGCTCGTTTCGTGGGTTGGCTTAG
* * * ** * **
16585407 GCATACGGAGTTCATTCCCAGTATAAGCATCAGATCAGATCGAGGGTTGCAGCAGCAAGATCAAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-ATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGC
* * * * * * * * ** * * *
16585472 AGCATGCAAGGGGAGA-CTGAGTCGATCCTCGGCTTGCACAATCTGCCTCTCCGGCTGATTGAAC
65 AGCACGC-AGGGGGGACCAG-GCCGATCCCCGACTTGCGCATTCTGCCTCTCCCACCGACTGAGC
** * * * *
16585536 GGTCGCACGCTTGTTTCATGGGATGACTTAG
128 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
16585567 GCATACGGAGTTCATCCCCAGTCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAG
16585594 CATGCAGAGT
Statistics
Matches: 390, Mismatches: 103, Indels: 19
0.76 0.20 0.04
Matches are distributed among these distances:
156 3 0.01
157 45 0.12
158 95 0.24
159 155 0.40
160 92 0.24
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCA
GCACGCAGGGGGGACCAGGCCGATCCCCGACTTGCGCATTCTGCCTCTCCCACCGACTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:16586979 original size:26 final size:26
Alignment explanation
Indices: 16586949--16587001 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16586939 GTTGACTTAG
16586949 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16586975 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16587001 G
1 G
16587002 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16587275 original size:158 final size:158
Alignment explanation
Indices: 16586975--16587318 Score: 449
Period size: 158 Copynumber: 2.2 Consensus size: 158
16586965 CCCAGTCTAA
** ** * * *
16586975 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGACCGGATCGAGGGTTACGGTAGTAGGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGCCCCAACCGAATCGAGGGTTACGGTAGTAGGACCGAC
* * * * *
16587039 AGCACGCAAGGGGGACCAGGCCGATCTCTGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGTGC
65 AGCACACAAGGGGGACCAGGACGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGC
**
16587104 CCTCACACCCGTTTCGTGGGTTGGCTTAG
130 CAACACACCCGTTTCGTGGGTTGGCTTAG
* ** *
16587133 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGAATCGAGGGTTGTGGTAG-CGGACCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGAATCGAGGGTTACGGTAGTAGGACCGACA
* * *
16587197 GCACACAGAGGGGGACTAGGACGATCCCCGGCTTGCGTATTCTGCCTCTCCGATGGGCTGAGCGC
66 GCACACA-AGGGGGACCAGGACGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGC
* *
16587262 CAACACGCTCGTTTCGTGGGTTGGCTTAG
130 CAACACACCCGTTTCGTGGGTTGGCTTAG
16587291 GCATACGGAGTTCATTCCATGTCTAAGC
1 GCATACGGAGTTCATTCCATGTCTAAGC
16587319 GTACGGAGTT
Statistics
Matches: 160, Mismatches: 24, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
157 16 0.10
158 144 0.90
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGAATCGAGGGTTACGGTAGTAGGACCGACA
GCACACAAGGGGGACCAGGACGATCCCCGGCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCC
AACACACCCGTTTCGTGGGTTGGCTTAG
Done.