Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19866354
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 74000 characters in sequence are not A, C, G, or T
File 79 of 100
Found at i:16587330 original size:26 final size:26
Alignment explanation
Indices: 16587294--16587343 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
16587284 GGCTTAGGCA
16587294 TACGGAGTTCATT-CCATGTCTAAGCG
1 TACGGAGTTCATTCCCA-GTCTAAGCG
16587320 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
16587344 AGTTTGAACC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCG
Found at i:16588377 original size:26 final size:26
Alignment explanation
Indices: 16588347--16588399 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16588337 GTTGGCTTAG
*
16588347 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16588373 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16588399 G
1 G
16588400 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16588592 original size:26 final size:26
Alignment explanation
Indices: 16588556--16588608 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16588546 GTTGACTTAG
16588556 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16588582 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16588608 G
1 G
16588609 ATCGACCCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16589434 original size:26 final size:26
Alignment explanation
Indices: 16589398--16589448 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16589388 TAGCTTAGGT
16589398 ATACAGAGTTCATT-CCATGTCTAAGC
1 ATACAGAGTTCATTCCCA-GTCTAAGC
*
16589424 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
16589449 AGTTTGAGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:16596573 original size:26 final size:26
Alignment explanation
Indices: 16596537--16596587 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16596527 TTGGCTTAGG
*
16596537 CATACCGAGTTCATT-CCATGTCTAAC
1 CATACAGAGTTCATTCCCA-GTCTAAC
16596563 CATACAGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATTCCCAGTCTAA
16596588 GAGTTTGAGC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.29, G:0.12, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAC
Found at i:16597300 original size:26 final size:26
Alignment explanation
Indices: 16597270--16597322 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16597260 GTAGACTTAG
*
16597270 GCATATAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
16597296 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16597322 G
1 G
16597323 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16597673 original size:159 final size:158
Alignment explanation
Indices: 16597296--16597693 Score: 399
Period size: 159 Copynumber: 2.5 Consensus size: 158
16597286 CCCAGTCTAA
* * * * *
16597296 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGTGTTGCGGTAGCAAGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGATA
* * * * * * *
16597361 GCACGCAGGGGGGATCGGGCCGATCCTCGGCTTATGCATTCTGCCTCTCTGGCTGGCTGAGCGCC
66 GCACGCAGGGGGGATCGAGCCGATCCTCGGCTTATGCATTATGCCTCTCCGGCCGACTCAGCACC
* * ** *
16597426 CACATGCCCGTTTTGTGGGTTGGCTTAG
131 CACAAGCCCATTTCATGGGTTGACTTAG
* ** ** ** ** *
16597454 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-TTGGACCGAGGGTTATGGTAGTGGGATCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGA
* * *
16597517 TAGCATGCAGAGGGGGATCGAGTCGATCCTCGGCTTGAT-TATTATGCCTCTCCGGCCGACTCAG
64 TAGCACGCAG-GGGGGATCGAGCCGATCCTCGGCTT-ATGCATTATGCCTCTCCGGCCGACTCAG
*
16597581 CACCCGA-AAGCTCATTTCATGGGTTGACTTAG
127 CACCC-ACAAGCCCATTTCATGGGTTGACTTAG
* * * *
16597613 GCATACGGAGTACATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGATAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGATA
*
16597678 GCACGCAGGGGAGATC
66 GCACGCAGGGGGGATC
16597694 AGACCAGTCC
Statistics
Matches: 186, Mismatches: 47, Indels: 14
0.75 0.19 0.06
Matches are distributed among these distances:
157 3 0.02
158 60 0.32
159 117 0.63
160 6 0.03
ACGTcount: A:0.21, C:0.25, G:0.31, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGATA
GCACGCAGGGGGGATCGAGCCGATCCTCGGCTTATGCATTATGCCTCTCCGGCCGACTCAGCACC
CACAAGCCCATTTCATGGGTTGACTTAG
Found at i:16597796 original size:158 final size:157
Alignment explanation
Indices: 16597296--16597796 Score: 447
Period size: 158 Copynumber: 3.2 Consensus size: 157
16597286 CCCAGTCTAA
* * * * *
16597296 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGTGTTGCGGTAGCAAGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGATA
* * *
16597361 GCACGCAGGGGGGATCGGGCC-GATCCTCGGCTT-ATGCATTCTGCCTCTCTGGCTGGCTGAGCG
66 GCACGCAGGGGGGATCAGACCAG-TCCTCGGCTTGA-GCATTCTGCCTCTCCGGC-GGCTGAGCG
* * **
16597424 CCCACATGCCCGTTTTGTGGGTTGGCTTAG
128 CCCGCATGCTCGTTTCATGGGTTGGCTTAG
* ** ** ** ** *
16597454 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-TTGGACCGAGGGTTATGGTAGTGGGATCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGA
* * * ** * * *
16597517 TAGCATGCAGAGGGGGATCGAGTCGA-TCCTCGGCTTGATTATTATGCCTCTCCGGCCGACTCAG
64 TAGCACGCAG-GGGGGATC-AGACCAGTCCTCGGCTTGAGCATTCTGCCTCTCCGG-CGGCTGAG
* * * * *
16597581 CACCCGAAAGCTCATTTCATGGGTTGACTTAG
126 CGCCCGCATGCTCGTTTCATGGGTTGGCTTAG
* * * *
16597613 GCATACGGAGTACATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGATAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGATA
* * * * * *
16597678 GCACGCAGGGGAGATCAGACCAGTCCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGCAGAACGCC
66 GCACGCAGGGGGGATCAGACCAGTCCTCGGCTTGAGCATTCTGCCTCTCCGG-CGGCTGAGCGCC
*
16597743 CGCATGCTCGTTTCATGGGTCGGCTTAG
130 CGCATGCTCGTTTCATGGGTTGGCTTAG
*
16597771 GCGTACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16597797 CGTATGAAGT
Statistics
Matches: 260, Mismatches: 72, Indels: 22
0.73 0.20 0.06
Matches are distributed among these distances:
157 10 0.04
158 132 0.51
159 111 0.43
160 7 0.03
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGATA
GCACGCAGGGGGGATCAGACCAGTCCTCGGCTTGAGCATTCTGCCTCTCCGGCGGCTGAGCGCCC
GCATGCTCGTTTCATGGGTTGGCTTAG
Found at i:16598002 original size:26 final size:26
Alignment explanation
Indices: 16597966--16598018 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16597956 TTTGACTTAG
16597966 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
16597992 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16598018 G
1 G
16598019 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16599056 original size:26 final size:26
Alignment explanation
Indices: 16599020--16599072 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16599010 GTTGACTTAG
16599020 GCATACGGAGTTCAGCCCCAGTCTAA
1 GCATACGGAGTTCAGCCCCAGTCTAA
* **
16599046 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAGCCCCAGTCTAA
16599072 G
1 G
16599073 ATCAGATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCAGCCCCAGTCTAA
Found at i:16599532 original size:158 final size:160
Alignment explanation
Indices: 16599046--16600021 Score: 770
Period size: 158 Copynumber: 6.1 Consensus size: 160
16599036 CCCAGTCTAA
* * ** * * *
16599046 GCATATGGAGTTCATTCCCAGTCTAAGATCAGATTGGACCGAGGGTTGCAGCAGTAGTATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
*** * * * * * * * **
16599111 GCACGCAAAAGGGACCGGGCCGATCCCTGGCTTACGCATTCTGCCTCTCCGGCC-GAT-TGAGTG
66 GCACGCAGGGGGGACTGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCAGCCGGCTCAGAGCA
* * * * **
16599174 CCCGCATGCCCGTTTCGTGGGTTGGCCGAG
131 CCCGCACGCTCATTTCGTGGGTTGACTTAG
* * ** * *
16599204 GCATAGGGAGTTCATT-CCATGTCTAA-ACCCCAGCCGGACCGAGGGTTGTGGCAGCAGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGA-CCGGACCGAGGGTTGCGGCAGCAGGATCGA
* * * * * * * *
16599267 TAGCACGCAGAGGGGGAC-CGGCTCGATCCCTGACTTGTGCATTATGCCTCTCCTG-CGAGCTC-
64 CAGCACGCAG-GGGGGACTGGGC-CGATCCCCGGCTTGCGCATTCTACCTCTCCAGCCG-GCTCA
* *
16599329 -AGCCCCCGCACGCTCATTTCGTGGGTTGACTTAC
126 GAGCACCCGCACGCTCATTTCGTGGGTTGACTTAG
* * *
16599363 ACATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
16599428 GCACGCAGGGGGGACTGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCAGCCGGCT-AG-GCA
66 GCACGCAGGGGGGACTGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCAGCCGGCTCAGAGCA
* * * *
16599491 CCCGCACGCTCGTTTTGTGGCTTGGCTTAG
131 CCCGCACGCTCATTTCGTGGGTTGACTTAG
* *
16599521 GCATACGGAGTTCATTCGCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCAGGACTAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGA-T----
* * * * *
16599586 GCAGGATCGGTAGAACGCAAGGGGGGA-TCGGGTCGATCCCCGACTTGTGCATTCTACCTCTCTA
61 -C--GA-C---AGCACGC-AGGGGGGACT-GGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCA
* * * *
16599650 GCTGG-T-TGAGCACCTGCACGCTCATTTTGTGGGTTGACTTAG
117 GCCGGCTCAGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAG
* * * *
16599692 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGATCGAGGGTTCCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * * * * *
16599757 GCACGTAGGGTGGACCGTGCCGATCCCCAGCTTGTGCATTCTACCTCTCCGGTCGGCTC--AGCA
66 GCACGCAGGGGGGACTGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCAGCCGGCTCAGAGCA
* * *
16599820 CCCGAACGTTCATTTCATGGGTTGACTTAG
131 CCCGCACGCTCATTTCGTGGGTTGACTTAG
* * ** * *
16599850 GCATACGGAGTTCATTCCCAGTCTAAGATTGAACCATACTGAGGGTTGCGGCAGCAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * ** * * * *
16599915 GCATGCA-GGGGGA-TCGGTCC-AGTCCTTGGCTTGCGCATTCTGCCTCT-CTGATCGG-T-TGA
66 GCACGCAGGGGGGACT-GGGCCGA-TCCCCGGCTTGCGCATTCTACCTCTCCAG-CCGGCTCAGA
* * * * *
16599974 GCGCCCGAAAGCTCGTTTCGTGGGTTGGCTTAG
128 GCACCCGCACGCTCATTTCGTGGGTTGACTTAG
16600007 GCATACGGAGTTCAT
1 GCATACGGAGTTCAT
16600022 ACCATGTCTA
Statistics
Matches: 663, Mismatches: 119, Indels: 73
0.78 0.14 0.09
Matches are distributed among these distances:
156 4 0.01
157 81 0.12
158 303 0.46
159 124 0.19
160 8 0.01
162 1 0.00
163 2 0.00
164 1 0.00
165 1 0.00
166 2 0.00
167 1 0.00
170 10 0.02
171 125 0.19
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (160 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGGGGGGACTGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCAGCCGGCTCAGAGCA
CCCGCACGCTCATTTCGTGGGTTGACTTAG
Found at i:16599719 original size:171 final size:170
Alignment explanation
Indices: 16599413--16599884 Score: 499
Period size: 171 Copynumber: 2.8 Consensus size: 170
16599403 GAGGGTTACG
* *
16599413 GCAGCAGGATCGACAGCACGCAGGGGGGACTGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCC
1 GCAGCAGGATCGACAGAACGCAGGGGGGACTGGGCCGATCCCCGACTTGCGCATTCTACCTCTCC
* * *
16599478 AGCCGGCTAGGCACCCGCACGCTCGTTTTGTGGCTTGGCTTAGGCATACGGAGTTCATTCGCAGT
66 AGCCGGCTAGGCACCCGCACGCTCATTTTGTGGCTTGACTTAGGCATACGGAGTTCATTCCCAGT
* *
16599543 CTAAGATCGGACCGGACCGAGGGTTGCAGCAGCAGGACTA
131 CTAAGATCGAACCGGACCGAGGGTTCCAGCAGCAGGACTA
** * *
16599583 GCAGCAGGATCGGTAGAACGCAAGGGGGGA-TCGGGTCGATCCCCGACTTGTGCATTCTACCTCT
1 GCAGCAGGATCGACAGAACGC-AGGGGGGACT-GGGCCGATCCCCGACTTGCGCATTCTACCTCT
* * * * *
16599647 CTAGCTGG-TTGAGCACCTGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
64 CCAGCCGGCTAG-GCACCCGCACGCTCATTTTGTGGCTTGACTTAGGCATACGGAGTTCATTCCC
* *
16599711 AGTCTAAGATCGAACTGGATCGAGGGTT----C--C--G----
128 AGTCTAAGATCGAACCGGACCGAGGGTTCCAGCAGCAGGACTA
* * * * * *
16599742 GCAGCAGGATCGACAGCACGTAGGGTGGACCGTGCCGATCCCC-AGCTTGTGCATTCTACCTCTC
1 GCAGCAGGATCGACAGAACGCAGGGGGGACTGGGCCGATCCCCGA-CTTGCGCATTCTACCTCTC
* * * * ** *
16599806 CGGTCGGCTCA-GCACCCGAACGTTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA
65 CAGCCGGCT-AGGCACCCGCACGCTCATTTTGTGGCTTGACTTAGGCATACGGAGTTCATTCCCA
*
16599870 GTCTAAGATTGAACC
129 GTCTAAGATCGAACC
16599885 ATACTGAGGG
Statistics
Matches: 258, Mismatches: 37, Indels: 26
0.80 0.12 0.08
Matches are distributed among these distances:
157 1 0.00
158 100 0.39
159 18 0.07
163 1 0.00
165 1 0.00
167 1 0.00
170 21 0.08
171 115 0.45
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (170 bp):
GCAGCAGGATCGACAGAACGCAGGGGGGACTGGGCCGATCCCCGACTTGCGCATTCTACCTCTCC
AGCCGGCTAGGCACCCGCACGCTCATTTTGTGGCTTGACTTAGGCATACGGAGTTCATTCCCAGT
CTAAGATCGAACCGGACCGAGGGTTCCAGCAGCAGGACTA
Found at i:16599737 original size:329 final size:317
Alignment explanation
Indices: 16599046--16599905 Score: 901
Period size: 329 Copynumber: 2.7 Consensus size: 317
16599036 CCCAGTCTAA
* * * * * *
16599046 GCATATGGAGTTCATTCCCAGTCTAAGATC-AGATTGGACCGAGGGTTGCAGCAGTAGTATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACTGGACCGAGGGTTACGGCAGCAGGATCGAC
*** * * * ** *
16599110 AGCACGCAAAAGGGACCGGGCCGATCCCTGGCTTACGCATTCTGCCTCTCCGGCCGATTGAGTG-
65 AGCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGCCGGCTCAG-GC
* * ** * * * *
16599174 -CCCGCATGCCCGTTTCGTGGGTTGGCCGAGGCATAGGGAGTTCATTCCATGTCTAA-ACCCCAG
129 ACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA-GTCTAAGA-TCGAA
* * *
16599237 CCGGACCGAGGGTTGTGGCAGCAGGACCGATAGCACGCAGAGGGGGACCGGCTCGATCCCTGACT
192 CCGGACCGAGGGTTGCGGCAGCAGGACCGATAGAACGCAGAGGGGGACCGGCTCGATCCCCGACT
* *
16599302 TGTGCATTATGCCTCTCCTGCGAGCTCAGCCCCCGCACGCTCATTTCGTGGGTTGACTTAC
257 TGTGCATTATACCTCTCCTGCGAGCTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTAC
* * **
16599363 ACATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTACGGCAGCAGGATCGACA
* *
16599428 GCACGCAGGGGGGACTGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCAGCCGGCT-AGGCAC
66 GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGCCGGCTCAGGCAC
* * *
16599492 CCGCACGCTCGTTTTGTGGCTTGGCTTAGGCATACGGAGTTCATTCGCAGTCTAAGATCGGACCG
131 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTC-CAGTCTAAGATCGAACCG
* * *
16599557 GACCGAGGGTTGCAGCAGCAGGACTAGCAGCAGGATCGGTAGAACGCA-AGGGGGGATCGGGTCG
195 GACCGAGGGTTGCGGCAGCAGG---A-C--C--GA----TAGAACGCAGA-GGGGGACCGGCTCG
* * * * *
16599621 ATCCCCGACTTGTGCATTCTACCTCT-CTAGCTG-GTTGAGCACCTGCACGCTCATTTTGTGGGT
247 ATCCCCGACTTGTGCATTATACCTCTCCT-GC-GAGCTCAGCACCCGCACGCTCATTTCGTGGGT
*
16599684 TGACTTAG
310 TGACTTAC
* *
16599692 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGATCGAGGGTTCCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTACGGCAGCAGGATCGACA
* * * * * *
16599757 GCACGTAGGGTGGACCGTGCCGATCCCCAGCTTGTGCATTCTACCTCTCCGGTCGGCTCA-GCAC
66 GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGCCGGCTCAGGCAC
* * * * * * *
16599821 CCGAACGTTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAACCA
131 CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCGAACCG
* *
16599886 TACTGAGGGTTGCGGCAGCA
195 GACCGAGGGTTGCGGCAGCA
16599906 AGATCGACAG
Statistics
Matches: 449, Mismatches: 72, Indels: 32
0.81 0.13 0.06
Matches are distributed among these distances:
315 1 0.00
316 2 0.00
317 172 0.38
318 3 0.01
320 1 0.00
321 1 0.00
323 1 0.00
325 2 0.00
328 3 0.01
329 260 0.58
330 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (317 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTACGGCAGCAGGATCGACA
GCACGCAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCGGCCGGCTCAGGCAC
CCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAGTCTAAGATCGAACCGG
ACCGAGGGTTGCGGCAGCAGGACCGATAGAACGCAGAGGGGGACCGGCTCGATCCCCGACTTGTG
CATTATACCTCTCCTGCGAGCTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTAC
Found at i:16600098 original size:487 final size:488
Alignment explanation
Indices: 16599243--16600206 Score: 1046
Period size: 488 Copynumber: 2.0 Consensus size: 488
16599233 CCAGCCGGAC
** * *
16599243 CGAGGGTTGTGGCAGCAGGACCGATAGCACGCAGAGGGGGACCGGCTCGATCCCTGACTTGTGCA
1 CGAGGGTTCCGGCAGCAGGACCGACAGCACGCAGAGGGGGACCGGCTCGATCCCAGACTTGTGCA
* * * * *
16599308 TTATGCCTCTCCTGCGAGCTCAGCCCCCGCACGCTCATTTCGTGGGTTGACTTACACATACGGAG
66 TTATACCTCTCCGGCGAGCTCAGCACCCGAACGCTCATTTCATGGGTTGACTTACACATACGGAG
* *
16599373 TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGGATCGACAGCACGCAGGG
131 TTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGGCAGCAAGATCGACAGCACGCAGGG
* *
16599438 GGGACTGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCAGCCGGCTAGGCACCCGCACGCTCG
196 GGGACTGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCAGCCGGCTAGGCACCCGAAAGCTCG
* * * * * *
16599503 TTTTGTGGCTTGGCTTAGGCATACGGAGTTCATTCGCAGTCTAAGATCGGACCGGACCGAGGGTT
261 TTTCGTGGCTTGGCTTAGGCATACGGAGTTCATACGCAGTCTAAGATCGGACCAGACCCAGGCTA
** * *
16599568 GCAGCAGCAGGACTAGCAGCAGGATCGGTAGAACGCAA-GGGGGGATCGGGTCGATCCCC-GACT
326 GCAGCAGCAGGACTAGCAG-AGGATCGACAGAACGCAAGGGGGGGACCGAGTCGATCCCCAG-CT
* * * ** * **
16599631 TGTGCATTCTACCTCTCTAGCTGGTTGAGCACCTGCACGCTCATTTTGTGGGTTGACTTAGGCAT
389 TGCGCAATCTACCTCTCTAGCCGACTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCAT
* *
16599696 ACGGAGTTCATTCCCAGTCTAAGATCGAACTGGAT
454 ACGGAGTTCATCCCCAATCTAAGATCGAACTGGAT
* * *
16599731 CGAGGGTTCCGGCAGCAGGATCGACAGCACGTAG-GGTGGACCGTGC-CGATCCCCAG-CTTGTG
1 CGAGGGTTCCGGCAGCAGGACCGACAGCACGCAGAGGGGGACCG-GCTCGAT-CCCAGACTTGTG
* * **
16599793 CATTCTACCTCTCCGGTCG-GCTCAGCACCCGAACGTTCATTTCATGGGTTGACTTAGGCATACG
64 CATTATACCTCTCCGG-CGAGCTCAGCACCCGAACGCTCATTTCATGGGTTGACTTACACATACG
* * * * *
16599857 GAGTTCATTCCCAGTCTAAGATTGAACCATACTGAGGGTTGCGGCAGCAAGATCGACAGCATGCA
128 GAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGGCAGCAAGATCGACAGCACGCA
* ** * * * * *
16599922 -GGGGGA-TCGGTCC-AGTCCTTGGCTTGCGCATTCTGCCTCT-CTGATCGG-TTGAGCGCCCGA
193 GGGGGGACT-GGGCCGA-TCCCCGGCTTGCGCATTCTACCTCTCCAG-CCGGCTAG-GCACCCGA
* **
16599982 AAGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATAC-CATGTCTAAGCATACGAAGTTC
254 AAGCTCGTTTCGTGGCTTGGCTTAGGCATACGGAGTTCATACGCA-GTCTAAG-AT-CG--GACC
** * * * *
16600046 ATTCCCAGTCTAAGATCAG-ATCA-GACT-G-AG-GGTTGCGACAGCACGC-AGGGGGGGACCGA
314 AGACCCAGGCT-AG--CAGCAGCAGGACTAGCAGAGGAT-CGACAGAACGCAAGGGGGGGACCGA
* * * *
16600105 GTTGATCCCCAGCTTGCGCAATCTACCTCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCATGG
375 GTCGATCCCCAGCTTGCGCAATCTACCTCTCTAGCCGACTGAGCACCCGCACGCTCATTTCATGG
16600170 GTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAG
440 GTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAG
16600207 CAAATGGAGT
Statistics
Matches: 392, Mismatches: 66, Indels: 36
0.79 0.13 0.07
Matches are distributed among these distances:
485 8 0.02
486 86 0.22
487 134 0.34
488 142 0.36
489 3 0.01
490 8 0.02
491 5 0.01
492 3 0.01
493 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (488 bp):
CGAGGGTTCCGGCAGCAGGACCGACAGCACGCAGAGGGGGACCGGCTCGATCCCAGACTTGTGCA
TTATACCTCTCCGGCGAGCTCAGCACCCGAACGCTCATTTCATGGGTTGACTTACACATACGGAG
TTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGGCAGCAAGATCGACAGCACGCAGGG
GGGACTGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCAGCCGGCTAGGCACCCGAAAGCTCG
TTTCGTGGCTTGGCTTAGGCATACGGAGTTCATACGCAGTCTAAGATCGGACCAGACCCAGGCTA
GCAGCAGCAGGACTAGCAGAGGATCGACAGAACGCAAGGGGGGGACCGAGTCGATCCCCAGCTTG
CGCAATCTACCTCTCTAGCCGACTGAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATAC
GGAGTTCATCCCCAATCTAAGATCGAACTGGAT
Found at i:16601276 original size:26 final size:26
Alignment explanation
Indices: 16601247--16601299 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16601237 GTTGACTTAG
16601247 GCATACGGAGTTCAGCCCCAATCTAA
1 GCATACGGAGTTCAGCCCCAATCTAA
* **
16601273 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCAGCCCCAATCTAA
16601299 G
1 G
16601300 ATCAAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCAGCCCCAATCTAA
Found at i:16601753 original size:158 final size:160
Alignment explanation
Indices: 16601273--16602248 Score: 788
Period size: 158 Copynumber: 6.1 Consensus size: 160
16601263 CCCAATCTAA
* * * * * ** *
16601273 GCATATGGAGTTCATTCCCAATCTAAGATCAAACTGGACCGAGGGTTGTGATAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* ** * * * * * * **
16601338 GCATGCAAAGGGGACTGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGGCGACT--GAGTG
66 GCACGCAGGGGGGACTGGGCCGATCCCCGACTTGCGCATTCTACCTCTCCAGCCGGCTCAGAGCA
* * * * * *
16601401 CCTGCACGCCCGTTTCATGGGTTGGCCTAG
131 CCCGCACGCTCATTTCGTGGGTTGACTTAG
* * * * * *
16601431 GCATAGGGAGTTCATT-CCATGTCTAA-ACCCCAGCCGGACCGAGGGTTGTGGCAGCAGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAGA-TCGAACCGGACCGAGGGTTGCGGCAGCAGGATCGA
* * * * *
16601494 TAGCACGCAGAGGGGGACT-GGCTCGATCCCCGACTTGTGCATTATGCCTCTCCTG-CGAGCTC-
64 CAGCACGCAG-GGGGGACTGGGC-CGATCCCCGACTTGCGCATTCTACCTCTCCAGCCG-GCTCA
* *
16601556 -AGCCCCCGCACGCTCATTTCGTGGGTTGACTTAC
126 GAGCACCCGCACGCTCATTTCGTGGGTTGACTTAG
* * * *
16601590 ACATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
16601655 GCACGCAGGGGGGACTGGGCCGATCCCCGACTTGCGCATTCTACCTCTCCAGCCGGCT-AG-GCA
66 GCACGCAGGGGGGACTGGGCCGATCCCCGACTTGCGCATTCTACCTCTCCAGCCGGCTCAGAGCA
* * * *
16601718 CCCGCACGCTCGTTTTGTGGCTTGGCTTAG
131 CCCGCACGCTCATTTCGTGGGTTGACTTAG
* * *
16601748 GCATACGGAGTTCATTCGCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCAGGACTAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCAGGA-T----
* * * * * *
16601813 GCAGGATCGGTAGAACGCAAGGAGGGACCGGGTCGATCCCCGACTTGTGCATTCTACCTCTCTAG
61 -C--GA-C---AGCACGC-AGGGGGGACTGGGCCGATCCCCGACTTGCGCATTCTACCTCTCCAG
* * * *
16601878 CTGG-T-TGAGCACCTGCACGCTCATTTTGTGGGTTGACTTAG
118 CCGGCTCAGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAG
* * *
16601919 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGATCGAGGGTTCCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * * * * * *
16601984 GCACGTAGGGTGGACCGTGCCGATCCCC-AGCTTGTGCATTCTACCTCTCCGGTCGGCTC--AGC
66 GCACGCAGGGGGGACTGGGCCGATCCCCGA-CTTGCGCATTCTACCTCTCCAGCCGGCTCAGAGC
* * *
16602046 ACCCGAACGTTCATTTCATGGGTTGACTTAG
130 ACCCGCACGCTCATTTCGTGGGTTGACTTAG
* ** * *
16602077 GCATACGGAGTTCATTCCCAGTCTAAGATTGAACCATACTGAGGGTTGCGGCAGCAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
* * ** * * * * *
16602142 GCATGCA-GGGGGA-TCGGTCC-AGTCCTTGGCTTGCGCATTCTGCCTCT-CTGATCGG-T-TGA
66 GCACGCAGGGGGGACT-GGGCCGA-TCCCCGACTTGCGCATTCTACCTCTCCAG-CCGGCTCAGA
* * * * *
16602201 GCGCCCGAAAGCTCGTTTCGTGGGTTGGCTTAG
128 GCACCCGCACGCTCATTTCGTGGGTTGACTTAG
16602234 GCATACGGAGTTCAT
1 GCATACGGAGTTCAT
16602249 ACCATGTCTA
Statistics
Matches: 669, Mismatches: 114, Indels: 71
0.78 0.13 0.08
Matches are distributed among these distances:
156 4 0.01
157 79 0.12
158 309 0.46
159 130 0.19
160 4 0.01
162 1 0.00
163 2 0.00
164 1 0.00
165 1 0.00
166 2 0.00
167 1 0.00
170 9 0.01
171 126 0.19
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (160 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCAGGATCGACA
GCACGCAGGGGGGACTGGGCCGATCCCCGACTTGCGCATTCTACCTCTCCAGCCGGCTCAGAGCA
CCCGCACGCTCATTTCGTGGGTTGACTTAG
Found at i:16601964 original size:171 final size:165
Alignment explanation
Indices: 16601640--16602111 Score: 505
Period size: 171 Copynumber: 2.8 Consensus size: 165
16601630 GAGGGTTACG
** * *
16601640 GCAGCAGGATCGACAGCACGCAGGGGGGACTGGGCCGATCCCCGACTTGCGCATTCTACCTCTCC
1 GCAGCAGGATCGGTAG-ACGCA-GGGGGACCGGGCCGATCCCCGACTTGTGCATTCTACCTCT-C
* * * * *
16601705 AGCCGGCTAGGCACCCGCACGCTCGTTTTGTGGCTTGGCTTAGGCATACGGAGTTCATTCGCAGT
63 AGCTGGCTA-GCACCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* *
16601770 CTAAGATCGGACCGGACCGAGGGTTGCAGCAGCAGGACTA
127 CTAAGATCGAACCGGACCGAGGGTTCCAGCAGCAGGA-TA
*
16601810 GCAGCAGGATCGGTAGAACGCAAGGAGGGACCGGGTCGATCCCCGACTTGTGCATTCTACCTCTC
1 GCAGCAGGATCGGTAG-ACGC-AGG-GGGACCGGGCCGATCCCCGACTTGTGCATTCTACCTCTC
* *
16601875 TAGCTGGTTGAGCACCTGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
63 -AGCTGGCT-AGCACCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * * *
16601940 TCTAAGATCGAACTGGATCGAGGGTTCCGGCAGCAGGATC
126 TCTAAGATCGAACCGGACCGAGGGTTCCAGCAGCAGGATA
* * * *
16601980 G-A-CAGCA-C-GT--A-G--GGTGGACCGTGCCGATCCCC-AGCTTGTGCATTCTACCTCTCCG
1 GCAGCAGGATCGGTAGACGCAGGGGGACCGGGCCGATCCCCGA-CTTGTGCATTCTACCTCTCAG
* * * **
16602035 GTCGGCTCAGCACCCGAACGTTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
65 CT-GGCT-AGCACCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
*
16602100 TAAGATTGAACC
128 TAAGATCGAACC
16602112 ATACTGAGGG
Statistics
Matches: 262, Mismatches: 34, Indels: 24
0.82 0.11 0.08
Matches are distributed among these distances:
157 3 0.01
158 99 0.38
159 2 0.01
162 1 0.00
163 1 0.00
166 2 0.01
167 1 0.00
168 4 0.02
169 1 0.00
170 23 0.09
171 124 0.47
172 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.22
Consensus pattern (165 bp):
GCAGCAGGATCGGTAGACGCAGGGGGACCGGGCCGATCCCCGACTTGTGCATTCTACCTCTCAGC
TGGCTAGCACCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
GATCGAACCGGACCGAGGGTTCCAGCAGCAGGATA
Found at i:16601973 original size:329 final size:317
Alignment explanation
Indices: 16601273--16602132 Score: 910
Period size: 329 Copynumber: 2.7 Consensus size: 317
16601263 CCCAATCTAA
* * * ** ** *
16601273 GCATATGGAGTTCATTCCCAATCTAAGATCAAACTGGACCGAGGGTTGTGATAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTACGGCAGCAGGATCGACA
* ** * * * * * *
16601338 GCATGCAAAGGGGACTGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGGCGACTGAGTG--
66 GCACGCAGGGGGGACTGGGCCGATCCCCGACTTGCGCATTCTACCTCTCCGGCCGGCTCAG-GCA
* * * * * * *
16601401 CCTGCACGCCCGTTTCATGGGTTGGCCTAGGCATAGGGAGTTCATTCCATGTCTAA-ACCCCAGC
130 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCA-GTCTAAGA-TCGAAC
* * *
16601465 CGGACCGAGGGTTGTGGCAGCAGGACCGATAGCACGCAGAGGGGGACTGGCTCGATCCCCGACTT
193 CGGACCGAGGGTTGCGGCAGCAGGACCGATAGAACGCAGAGGGGGACCGGCTCGATCCCCGACTT
* *
16601530 GTGCATTATGCCTCTCCTGCGAGCTCAGCCCCCGCACGCTCATTTCGTGGGTTGACTTAC
258 GTGCATTATACCTCTCCTGCGAGCTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTAC
* * **
16601590 ACATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTACGGCAGCAGGATCGACA
*
16601655 GCACGCAGGGGGGACTGGGCCGATCCCCGACTTGCGCATTCTACCTCTCCAGCCGGCT-AGGCAC
66 GCACGCAGGGGGGACTGGGCCGATCCCCGACTTGCGCATTCTACCTCTCCGGCCGGCTCAGGCAC
** * *
16601719 CCGCACGCTCGTTTTGTGGCTTGGCTTAGGCATACGGAGTTCATTCGCAGTCTAAGATCGGACCG
131 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTC-CAGTCTAAGATCGAACCG
* *
16601784 GACCGAGGGTTGCAGCAGCAGGACTAGCAGCAGGATCGGTAGAACGCA-AGGAGGGACCGGGTCG
195 GACCGAGGGTTGCGGCAGCAGG---A-C--C--GA----TAGAACGCAGAGG-GGGACCGGCTCG
* * * * *
16601848 ATCCCCGACTTGTGCATTCTACCTCT-CTAGCTG-GTTGAGCACCTGCACGCTCATTTTGTGGGT
247 ATCCCCGACTTGTGCATTATACCTCTCCT-GC-GAGCTCAGCACCCGCACGCTCATTTCGTGGGT
*
16601911 TGACTTAG
310 TGACTTAC
* *
16601919 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGATCGAGGGTTCCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTACGGCAGCAGGATCGACA
* * * * * *
16601984 GCACGTAGGGTGGACCGTGCCGATCCCC-AGCTTGTGCATTCTACCTCTCCGGTCGGCTCA-GCA
66 GCACGCAGGGGGGACTGGGCCGATCCCCGA-CTTGCGCATTCTACCTCTCCGGCCGGCTCAGGCA
* * * * *
16602047 CCCGAACGTTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAACC
130 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCGAACC
** *
16602112 ATACTGAGGGTTGCGGCAGCA
194 GGACCGAGGGTTGCGGCAGCA
16602133 AGATCGACAG
Statistics
Matches: 450, Mismatches: 71, Indels: 32
0.81 0.13 0.06
Matches are distributed among these distances:
315 1 0.00
316 2 0.00
317 172 0.38
318 3 0.01
320 1 0.00
321 1 0.00
323 1 0.00
325 2 0.00
328 6 0.01
329 258 0.57
330 3 0.01
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (317 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTACGGCAGCAGGATCGACA
GCACGCAGGGGGGACTGGGCCGATCCCCGACTTGCGCATTCTACCTCTCCGGCCGGCTCAGGCAC
CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCAGTCTAAGATCGAACCGG
ACCGAGGGTTGCGGCAGCAGGACCGATAGAACGCAGAGGGGGACCGGCTCGATCCCCGACTTGTG
CATTATACCTCTCCTGCGAGCTCAGCACCCGCACGCTCATTTCGTGGGTTGACTTAC
Found at i:16603502 original size:26 final size:26
Alignment explanation
Indices: 16603473--16603525 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16603463 GTTGACTTAG
16603473 GCATACGGAGTTCAGCCCCAATCTAA
1 GCATACGGAGTTCAGCCCCAATCTAA
* **
16603499 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCAGCCCCAATCTAA
16603525 G
1 G
16603526 ATCAAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCAGCCCCAATCTAA
Found at i:16604002 original size:26 final size:26
Alignment explanation
Indices: 16603973--16604025 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16603963 GTTGGTTTAG
16603973 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
*
16603999 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
16604025 G
1 G
16604026 ATCGGACAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:16605136 original size:26 final size:26
Alignment explanation
Indices: 16605095--16605146 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16605085 TTGGCTTAGT
*
16605095 CATACGGACTTTATT-CCATGTCTAAG
1 CATACGGACTTCATTCCCA-GTCTAAG
*
16605121 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGACTTCATTCCCAGTCTAAG
16605147 AGTTTGAGCC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (26 bp):
CATACGGACTTCATTCCCAGTCTAAG
Found at i:16605877 original size:26 final size:26
Alignment explanation
Indices: 16605826--16605878 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16605816 GTTGACTTAG
*
16605826 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGCCTAA
16605852 GCATACGGAGTTCATTCCC-AGCCTAA
1 GCATACGGAGTTCA-TCCCTAGCCTAA
16605878 G
1 G
16605879 ATTGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGCCTAA
Found at i:16607367 original size:26 final size:26
Alignment explanation
Indices: 16607317--16607369 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16607307 GTTGGCTTAG
*
16607317 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
*
16607343 GCATACGGAGTTCATTCCCA-ATCTAA
1 GCATACAGAGTTCATT-CCATATCTAA
16607369 G
1 G
16607370 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:16608086 original size:26 final size:26
Alignment explanation
Indices: 16608050--16608102 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16608040 GTTGACTTAG
16608050 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
16608076 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16608102 G
1 G
16608103 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16608383 original size:157 final size:157
Alignment explanation
Indices: 16608084--16608417 Score: 361
Period size: 157 Copynumber: 2.1 Consensus size: 157
16608074 AAGCATATGG
* **
16608084 AGTTCATTCCTAGTCTAAGATCAGACCAGACTAAGGGTTACGGTAGCAGGATCGGTAGCATGCAG
1 AGTTCATTCCTA-TCTAAGATCAGACCAGACCAAGGGTTACGGTAGCAGGATCGACAGCATGCAG
* * * * *
16608149 AGGGGACCTGGTCGATCCCTGACTTGCGCATTCTACCTCTCCAGTCGACTGAGCGCCCACATGCC
65 AGGGGACCAGATCGATCCCTCACTTGAGCATTCTACCTCTCCAGTCGACTGAGCGCCCACACGCC
* *
16608214 CGTTTCGTGGGTTGACTTAGGCATACGA
130 CATTTCATGGGTTGACTTAGGCATACGA
** * **
16608242 AGTTCATTCCTATCTAAGATTGGACC-GTACCGAGGGTTGTGGTAGCAGGATCGACAGCATGCAG
1 AGTTCATTCCTATCTAAGATCAGACCAG-ACCAAGGGTTACGGTAGCAGGATCGACAGCATGCAG
* * * * **
16608306 GGGGGACCAGATC-AGTCCC-CAGTATGAGCATTCTACTTCTCC-GATCGACTGAGCGCTCGTAC
65 AGGGGACCAGATCGA-TCCCTCACT-TGAGCATTCTACCTCTCCAG-TCGACTGAGCGCCCACAC
* * *
16608368 GCTCATTTCATGGGTTGGCTTAGGCATACGG
127 GCCCATTTCATGGGTTGACTTAGGCATACGA
*
16608399 AGTTCATTCCATGTCTAAG
1 AGTTCATTCC-TATCTAAG
16608418 CATAGGGAGT
Statistics
Matches: 146, Mismatches: 25, Indels: 10
0.81 0.14 0.06
Matches are distributed among these distances:
156 5 0.03
157 122 0.84
158 19 0.13
ACGTcount: A:0.22, C:0.25, G:0.27, T:0.25
Consensus pattern (157 bp):
AGTTCATTCCTATCTAAGATCAGACCAGACCAAGGGTTACGGTAGCAGGATCGACAGCATGCAGA
GGGGACCAGATCGATCCCTCACTTGAGCATTCTACCTCTCCAGTCGACTGAGCGCCCACACGCCC
ATTTCATGGGTTGACTTAGGCATACGA
Found at i:16608421 original size:26 final size:26
Alignment explanation
Indices: 16608391--16608443 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16608381 GTTGGCTTAG
16608391 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
16608417 GCATAGGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16608443 G
1 G
16608444 ATCAGGCTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16609907 original size:158 final size:159
Alignment explanation
Indices: 16609509--16610205 Score: 622
Period size: 158 Copynumber: 4.4 Consensus size: 159
16609499 TTCGGTCGGT
* * * *
16609509 TGAGCACCCGCACGCTTGTTTCGTGGGTTGGGTTAGGCATAGGGAGTTCATTCTATGTCTAAGCC
1 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
* * ** * *
16609574 CCAGTCGGATCGAGGGTTGTGGCAGTGGGACTGGCAGCACGTAGAGGGGGA-TCGGGTCGATCCC
66 CCAGGCGGACCGAGGGTTGTGGCAGTAAGACTGGCAGCACGCAGAGGGGGACT-GGGCCGATCCC
* ** * * **
16609638 CGGCTTATGCATTATGCCTCTTCGGTCGGC
130 CGACTTGCGCATTCTGCCTCTCCGACCGGC
* * ** * * * * ** * *
16609668 TCAGCACCCAAATGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCC-TAGTATAAGA
1 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCAT-GTCTAAGC
* * ** * ** * * *
16609732 TCAAATCGGACTGAGGGTTACGGAAGTAAGATTGACAGCACGCAG-GGGGGACTGGGCCGATCCC
65 CCCAGGCGGACCGAGGGTTGTGGCAGTAAGACTGGCAGCACGCAGAGGGGGACTGGGCCGATCCC
*
16609796 CGACTTGCACATTCTGCCTCTCCGACCGGC
130 CGACTTGCGCATTCTGCCTCTCCGACCGGC
* *
16609826 TGAGCGCCCGCACGCTGGTTTCGTGGGTTGGCTTATGCATAGGGAGTTCATTCCATGTCTAAGCC
1 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
* * * * * *
16609891 CCAGGCAGACCAAGGGTTGTGGCAGT-GGAAC-AGCAGCACGTAGAGGGGGACCT-GGCTGATCC
66 CCAGGCGGACCGAGGGTTGTGGCAGTAAG-ACTGGCAGCACGCAGAGGGGGA-CTGGGCCGATCC
* *
16609953 CCGGA-TTGCGCATTCTGCCTCTCTGGCCGGC
129 CC-GACTTGCGCATTCTGCCTCTCCGACCGGC
* * * * *
16609984 TGAGCGGCCGCATGC-CTATTTCATGGGTTGGCTTAGGCATAGGGTGTTCATTCCATGTCTAAGC
1 TGAGCGCCCGCACGCTC-GTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
* * * * *
16610048 CCCA-GCTGCACCGAGGGTTGTGGCAGCAGGACCGGCAGCACGCAGAGGGGGAC-CGGCCGATCC
65 CCCAGGC-GGACCGAGGGTTGTGGCAGTAAGACTGGCAGCACGCAGAGGGGGACTGGGCCGATCC
* * * **
16610111 ACGGCTTGCGCATTCTGCCTCTCCAACCGAT
129 CCGACTTGCGCATTCTGCCTCTCCGACCGGC
* * * * * *
16610142 TGAGTGCCCACACGCTCGTCTCGTGGGTTCGCTTAGGCATACGGAGTTAATTCCATGTCTAAGC
1 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
16610206 ATACAGGGTT
Statistics
Matches: 423, Mismatches: 101, Indels: 29
0.76 0.18 0.05
Matches are distributed among these distances:
157 13 0.03
158 304 0.72
159 106 0.25
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (159 bp):
TGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
CCAGGCGGACCGAGGGTTGTGGCAGTAAGACTGGCAGCACGCAGAGGGGGACTGGGCCGATCCCC
GACTTGCGCATTCTGCCTCTCCGACCGGC
Found at i:16610089 original size:316 final size:317
Alignment explanation
Indices: 16609509--16610205 Score: 787
Period size: 316 Copynumber: 2.2 Consensus size: 317
16609499 TTCGGTCGGT
* * * *
16609509 TGAGCACCCGCACGCTTGTTTCGTGGGTTGGGTTAGGCATAGGGAGTTCATTCTATGTCTAAGCC
1 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
* * * * * * * *
16609574 CCAGTCGGATCGAGGGTTGTGGCAGTGGGACTGGCAGCACGTAGAGGGGGATCGGGTCGATCCCC
66 CCAGGCAGACCAAGGGTTGTGGCAGTGGAACTAGCAGCACGTAGAGGGGGACCGGCTCGATCCCC
* * *
16609639 GGCTTATGCATTATGCCTCTTCGGTCGGCTCAGCACCCAAATGCTCATTTCATGGGTTGACTTAG
131 GGATTACGCATTATGCCTCTTCGGCCGGCTCAGCACCCAAATGCTCATTTCATGGGTTGACTTAG
* * * * **
16609704 GCATACAGAGTTCATTCCTAGTATAAGATCAAATCGGACTGAGGGTTACGGAAGTAAGATTGACA
196 GCATACAGAGTTCATTCCTAGTATAAGACCAAATCGCACCGAGGGTTACGGAAGCAAGACCGACA
* * * *
16609769 GCACGCAG-GGGGGACTGGGCCGATCCCCGACTTGCACATTCTGCCTCTCCGACCGGC
261 GCACGCAGAGGGGGAC-CGGCCGATCCACGACTTGCACATTCTGCCTCTCCAACCGAC
* *
16609826 TGAGCGCCCGCACGCTGGTTTCGTGGGTTGGCTTATGCATAGGGAGTTCATTCCATGTCTAAGCC
1 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
16609891 CCAGGCAGACCAAGGGTTGTGGCAGTGGAAC-AGCAGCACGTAGAGGGGGACCTGGCT-GATCCC
66 CCAGGCAGACCAAGGGTTGTGGCAGTGGAACTAGCAGCACGTAGAGGGGGACC-GGCTCGATCCC
* * * ** ** *
16609954 CGGATTGCGCATTCTGCCTC-TCTGGCCGGCTGAGCGGCCGCATGC-CTATTTCATGGGTTGGCT
130 CGGATTACGCATTATGCCTCTTC-GGCCGGCTCAGCACCCAAATGCTC-ATTTCATGGGTTGACT
** * * ** * ** * *
16610017 TAGGCATAGGGTGTTCATTCC-ATGTCTAAG-CCCCAGCTGCACCGAGGGTTGTGGCAGCAGGAC
193 TAGGCATACAGAGTTCATTCCTA-GTATAAGACCAAATC-GCACCGAGGGTTACGGAAGCAAGAC
* * * *
16610080 CGGCAGCACGCAGAGGGGGACCGGCCGATCCACGGCTTGCGCATTCTGCCTCTCCAACCGAT
256 CGACAGCACGCAGAGGGGGACCGGCCGATCCACGACTTGCACATTCTGCCTCTCCAACCGAC
* * * * * *
16610142 TGAGTGCCCACACGCTCGTCTCGTGGGTTCGCTTAGGCATACGGAGTTAATTCCATGTCTAAGC
1 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
16610206 ATACAGGGTT
Statistics
Matches: 317, Mismatches: 57, Indels: 13
0.82 0.15 0.03
Matches are distributed among these distances:
315 7 0.02
316 214 0.68
317 96 0.30
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (317 bp):
TGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
CCAGGCAGACCAAGGGTTGTGGCAGTGGAACTAGCAGCACGTAGAGGGGGACCGGCTCGATCCCC
GGATTACGCATTATGCCTCTTCGGCCGGCTCAGCACCCAAATGCTCATTTCATGGGTTGACTTAG
GCATACAGAGTTCATTCCTAGTATAAGACCAAATCGCACCGAGGGTTACGGAAGCAAGACCGACA
GCACGCAGAGGGGGACCGGCCGATCCACGACTTGCACATTCTGCCTCTCCAACCGAC
Found at i:16610927 original size:26 final size:26
Alignment explanation
Indices: 16610891--16610943 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16610881 GTGGACTTAG
16610891 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
16610917 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16610943 G
1 G
16610944 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16611111 original size:26 final size:26
Alignment explanation
Indices: 16611075--16611127 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16611065 GTTGACTTAG
*
16611075 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATAAGGAGTTCATTCCCA-GTCTAA
16611101 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
16611127 G
1 G
16611128 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:16611608 original size:177 final size:176
Alignment explanation
Indices: 16611312--16611988 Score: 534
Period size: 177 Copynumber: 3.8 Consensus size: 176
16611302 GATCAGATCT
* * ** * * * * * * *
16611312 AGGGTTGCGGTAGCAGGATCGACAGCACGGAGGGGGGATC-AGGCTGATCCCTGGCTTGCGTATT
1 AGGGTTGCGATAGTAGGATCGGTAGCACGCAGGAGGGACCGA-GCCGATCCCCGGCTTGTGCATT
* * * * * **
16611376 CTACTTCTCCGGTCGGTTGAGCACCCGTACACTCATTTTTTGGGTTGGCTTAGGCATACGGAGTT
65 CTGCCTCTCCGGTCGGCTGAGCACCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTT
*
16611441 CATTCCATGTCTAAGCATACAGAGTTCATTCGTGGGTTGACCGGGCTG
130 CATTCCATGTCTAAGCATACAGAGTTCATTCGTGGGTTGA-CAGGCTG
* * * *
16611489 AGGGTTGCGATAGCAGGATCGGTAGCACGCAGGAGGGACCGAACCAATCCACGGCTTGTGCATTC
1 AGGGTTGCGATAGTAGGATCGGTAGCACGCAGGAGGGACCGAGCCGATCCCCGGCTTGTGCATTC
* * * * **
16611554 TGCTTCTTCGGTCGGTTGAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTC
66 TGCCTCTCCGGTCGGCTGAGCACCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTC
* ** * ** *
16611619 ATACCATGTCTAAGC---CCCAG-TCGAATCAAGGGTTG--TGG-T-
131 ATTCCATGTCTAAGCATACAGAGTTC-ATTCGTGGGTTGACAGGCTG
* * * * * * *
16611658 AGCAGGAT-CGATAGTGGGATCGGTAGCACGTAGAAGGGGATCGAGCTGATCCCCGGCTTGTACA
1 AG--GGTTGCGATAGTAGGATCGGTAGCACGCAGGA-GGGACCGAGCCGATCCCCGGCTTGTGCA
* * * * * * *
16611722 TTATGCCTCTCCGATTGACTGAGCACCCACATGA-TCGTTTCGTGGGTTGACTTAGGCATACGGA
63 TTCTGCCTCTCCGGTCGGCTGAGCACCCGCA-CACTCGTTTCGTGGGTTGGCTTAGGCATACGGA
* * * ** *
16611786 GTTCATCCGCA-GTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTGGATCAAACCG
127 GTTCATTC-CATGTCTAAGCATACAGAGTTCATT--C-G--T-GGGTT-GA-CAGGCTG
** * * *
16611844 AGGGTTGCGATAGTAGGATCGACAGCACACAGGGGGGACCGAGCCGATCCCCAGCTTGTGCATTC
1 AGGGTTGCGATAGTAGGATCGGTAGCACGCAGGAGGGACCGAGCCGATCCCCGGCTTGTGCATTC
* * *
16611909 TGCCTCTCTGGCCGGCTGAGCACCCGCACAC-CTGTTTCGTGGGTTGGCTTAGGCATAAGGAGTT
66 TGCCTCTCCGGTCGGCTGAGCACCCGCACACTC-GTTTCGTGGGTTGGCTTAGGCATACGGAGTT
16611973 CATTCCATGTCTAAGC
130 CATTCCATGTCTAAGC
16611989 CCCAGCTACA
Statistics
Matches: 386, Mismatches: 87, Indels: 47
0.74 0.17 0.09
Matches are distributed among these distances:
169 2 0.01
170 24 0.06
171 93 0.24
172 2 0.01
173 2 0.01
174 17 0.04
175 2 0.01
176 1 0.00
177 120 0.31
178 1 0.00
180 3 0.01
181 1 0.00
183 4 0.01
184 92 0.24
185 20 0.05
186 2 0.01
ACGTcount: A:0.20, C:0.24, G:0.30, T:0.25
Consensus pattern (176 bp):
AGGGTTGCGATAGTAGGATCGGTAGCACGCAGGAGGGACCGAGCCGATCCCCGGCTTGTGCATTC
TGCCTCTCCGGTCGGCTGAGCACCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTC
ATTCCATGTCTAAGCATACAGAGTTCATTCGTGGGTTGACAGGCTG
Found at i:16611813 original size:26 final size:26
Alignment explanation
Indices: 16611777--16611829 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16611767 GTTGACTTAG
*
16611777 GCATACGGAGTTCA-TCCGCAGTCTAA
1 GCATACAGAGTTCATTCC-CAGTCTAA
16611803 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16611829 G
1 G
16611830 ATTGGATCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16612550 original size:26 final size:26
Alignment explanation
Indices: 16612514--16612565 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16612504 TTGGCTTAGC
16612514 CATACGGAGTTCATT-CCATGTCTAAG
1 CATACGGAGTTCATTCCCA-GTCTAAG
16612540 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
16612566 AGTTTGAGCA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:16613597 original size:159 final size:158
Alignment explanation
Indices: 16613235--16613736 Score: 367
Period size: 158 Copynumber: 3.2 Consensus size: 158
16613225 CGTAGTCTAA
* * * * * * *
16613235 GCATATGGAGTTCATTCC-TAGTCTAAGATCAGACCAGACTGAA-GGTTGCAACAGCAGGATCGG
1 GCATACGGAGTTCATTCCAT-GTCTAAGATTAGACCAGAC-CAAGGGTTGCAGCAACAAGATCGA
* * * * * * * ** *
16613298 CAGCACGCAGGGGGGA-CCAGGTCTATCCCCGGCTT-GGTCATTTTGCCTCTCCGGTTCG-CTGA
64 CAACATGCAGGGGGGATCGA-GCCGATCCCCGGCTTACG-CATTATGCCTCTCC-GACCGACTCA
** * ** *
16613360 GTGCCCGCACGCTCATTTTTTGGGTTGGCTTAG
126 ACGCCCGAACGCTCATTTCATGGGTTGACTTAG
* * * * * ** *
16613393 GCATAGGGAGCTCATTCCATGTCTAAG-TCCCAG-TCGGACCAAGGGTTGTGGCAACGAGA-CTG
1 GCATACGGAGTTCATTCCATGTCTAAGAT--TAGACCAGACCAAGGGTTGCAGCAACAAGATC-G
* * *
16613455 ACAACATGCAGAGGGGGA-CTGGGTCGATCCCCGGCTTACGCATTATGCCTCTCCGACCGGCTCA
63 ACAACATGCAG-GGGGGATC-GAGCCGATCCCCGGCTTACGCATTATGCCTCTCCGACCGACTCA
* *
16613519 ACGCCCGAATGCTCATTTCGTGGGTTGACTTAG
126 ACGCCCGAACGCTCATTTCATGGGTTGACTTAG
* *
16613552 GCATACGGAGTTCATTCCCA-GTCTAAGATTAGACCAGACCGAGGGTTGCAGCAACAAGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATTAGACCAGACCAAGGGTTGCAGCAACAAGATCGAC
* * * * * * * * *
16613616 AGCATGTAGGGGGGATCGAGCCGGTTCGCGGCTTACGCATTCTGCCTCTCCGGCTGACTGAACGC
65 AACATGCAGGGGGGATCGAGCCGATCCCCGGCTTACGCATTATGCCTCTCCGACCGACTCAACGC
* * ** *
16613681 CTGCACGCTTGTTTCATGGGTTGGCTTAG
130 CCGAACGCTCATTTCATGGGTTGACTTAG
16613710 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
16613737 TATTCGAAGT
Statistics
Matches: 271, Mismatches: 58, Indels: 30
0.75 0.16 0.08
Matches are distributed among these distances:
157 7 0.03
158 140 0.52
159 118 0.44
160 6 0.02
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATTAGACCAGACCAAGGGTTGCAGCAACAAGATCGACA
ACATGCAGGGGGGATCGAGCCGATCCCCGGCTTACGCATTATGCCTCTCCGACCGACTCAACGCC
CGAACGCTCATTTCATGGGTTGACTTAG
Found at i:16615899 original size:159 final size:158
Alignment explanation
Indices: 16615645--16615939 Score: 387
Period size: 159 Copynumber: 1.9 Consensus size: 158
16615635 GAGGGTTACA
* *
16615645 GCAGCAGGATCGACAGCACACAGGGGGGACAGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCC
1 GCAGCAGGACCGACAGCACACAGGGGGGACAGGGTCAATCCCCGGCTTGCGCATTCTGCCTCTCC
* * ** *
16615710 GGCTGGCTGAGGGCTCGCACGCCCGTTTCGTGGGTTAGCTTAAGCATAGGGAGTTCATTCCTTGT
66 GACCGGCTGAGGGCTCGCACGCCCGTTTCGTCAGTTAGCTTAAGCATAGGGAGTTCATTCCATGT
16615775 CTAAGCCCCAGCTGAACCGAGGGTTGTG
131 CTAAGCCCCAGCTGAACCGAGGGTTGTG
* * * *
16615803 GCAGCAGGACCGGCAGCACGCAGAGGGGGACCGGG-CTAATCCCCGGCTTGCGCATTCTGGCTCT
1 GCAGCAGGACCGACAGCACACAG-GGGGGACAGGGTC-AATCCCCGGCTTGCGCATTCTGCCTCT
* * * * * * *
16615867 CTGACCGGCTGAGCG-TCCGCATGCTCGTTTCGTCAGTTGGCTTAGGCATATGGAGTTCATTCCA
64 CCGACCGGCTGAGGGCT-CGCACGCCCGTTTCGTCAGTTAGCTTAAGCATAGGGAGTTCATTCCA
16615931 TGTCTAAGC
128 TGTCTAAGC
16615940 ATACGGAGTT
Statistics
Matches: 116, Mismatches: 18, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
158 22 0.19
159 94 0.81
ACGTcount: A:0.17, C:0.29, G:0.32, T:0.22
Consensus pattern (158 bp):
GCAGCAGGACCGACAGCACACAGGGGGGACAGGGTCAATCCCCGGCTTGCGCATTCTGCCTCTCC
GACCGGCTGAGGGCTCGCACGCCCGTTTCGTCAGTTAGCTTAAGCATAGGGAGTTCATTCCATGT
CTAAGCCCCAGCTGAACCGAGGGTTGTG
Found at i:16615941 original size:26 final size:26
Alignment explanation
Indices: 16615912--16615964 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16615902 GTTGGCTTAG
*
16615912 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16615938 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16615964 G
1 G
16615965 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16617145 original size:26 final size:26
Alignment explanation
Indices: 16617114--16617163 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
16617104 GGTTTAGGCG
16617114 TACGAAATTCATT-CCATGTCTAAGCA
1 TACGAAATTCATTCCCA-GTCTAAGCA
*
16617140 TACGAAGTTCATTCCCAGTCTAAG
1 TACGAAATTCATTCCCAGTCTAAG
16617164 ATCAGACCGG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.30
Consensus pattern (26 bp):
TACGAAATTCATTCCCAGTCTAAGCA
Found at i:16617395 original size:212 final size:213
Alignment explanation
Indices: 16617006--16617403 Score: 518
Period size: 212 Copynumber: 1.9 Consensus size: 213
16616996 GTTGCAGTAG
* * * *
16617006 CAGGATCGACAGCACACAAGGGGGGACAGGGTCGATCCCCGGCTTACGCATTCTGCCTTTTCGGT
1 CAGGATCGACAGCACACAAGGGGGGACAGGGTCGATCCCCAGCTTACGCATTCTGCCTGTCCAGT
* * ** * * *
16617071 CGGCTAAGCGCCGGCACGCTCGTTTCATTGGTTGGTTTAGGCGTACGAAATTCATTCCATGTCTA
66 CGGCTAAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAAGAAATTCATCCCATGTCTA
**
16617136 AGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGTTCGAGGGTTGCGACAGTAGGACCAGC
131 AGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGACTCGAGGGTTGCGACAGTAGGACCAGC
16617201 AGCAGGATCGGTAGCACA
196 AGCAGGATCGGTAGCACA
* * * *
16617219 CAGGATTGATAGCACGC-AGGGGGGACCA-GGTCGATCCCCAGCTTGCGCATTCTGCCTGTCCAG
1 CAGGATCGACAGCACACAAGGGGGGA-CAGGGTCGATCCCCAGCTTACGCATTCTGCCTGTCCAG
* * * * * *
16617282 TCGGCTGAGCGCCCGCACGGTTGTTTCGTGGGTTGACTTAGGCATAAGGAGTTCATCCCCA-GTC
65 TCGGCTAAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAAGAAATTCAT-CCCATGTC
16617346 TAAGCATAC-AGAGTTCATTCCCAGTCTAAGATCAGACCGAACT-GAGGGTTGCGACAGT
129 TAAGCATACGA-AGTTCATTCCCAGTCTAAGATCAGACCG-ACTCGAGGGTTGCGACAGT
16617404 TGGATTTAGC
Statistics
Matches: 158, Mismatches: 23, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
211 1 0.01
212 137 0.87
213 20 0.13
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.23
Consensus pattern (213 bp):
CAGGATCGACAGCACACAAGGGGGGACAGGGTCGATCCCCAGCTTACGCATTCTGCCTGTCCAGT
CGGCTAAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAAGAAATTCATCCCATGTCTA
AGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGACTCGAGGGTTGCGACAGTAGGACCAGC
AGCAGGATCGGTAGCACA
Found at i:16619255 original size:26 final size:26
Alignment explanation
Indices: 16619219--16619271 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16619209 GTTGGCTTAG
16619219 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16619245 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16619271 G
1 G
16619272 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16619383 original size:13 final size:13
Alignment explanation
Indices: 16619365--16619389 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
16619355 GCACATTCTA
16619365 CCTCTCCGGTCGG
1 CCTCTCCGGTCGG
16619378 CCTCTCCGGTCG
1 CCTCTCCGGTCG
16619390 ACTGAGCGCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.48, G:0.28, T:0.24
Consensus pattern (13 bp):
CCTCTCCGGTCGG
Found at i:16619945 original size:26 final size:26
Alignment explanation
Indices: 16619915--16619967 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16619905 GTTGACTTAG
16619915 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
16619941 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16619967 G
1 G
16619968 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16620396 original size:11 final size:11
Alignment explanation
Indices: 16620380--16620412 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
16620370 CTCAGGGCAC
16620380 CATCGTCGGAG
1 CATCGTCGGAG
16620391 CATCGTCGGAG
1 CATCGTCGGAG
*
16620402 CATCATCGGAG
1 CATCGTCGGAG
16620413 AGCCTAACCG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.21, C:0.27, G:0.33, T:0.18
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:16621021 original size:26 final size:26
Alignment explanation
Indices: 16620991--16621043 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16620981 GTTGACTTAG
*
16620991 GCATACGAAGTTCATCCCCAGTGTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
16621017 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
16621043 G
1 G
16621044 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:16621230 original size:184 final size:184
Alignment explanation
Indices: 16620969--16621582 Score: 626
Period size: 184 Copynumber: 3.3 Consensus size: 184
16620959 CCTCCTCACA
* *
16620969 CTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTGTAAGCATACGAAGTTCATTC
1 CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTC
* * * *
16621034 CCAGTCTAAGATCGGATCAGACCGAGGGTTGCGA-CAGCAGGATCGGCAGCACGCAGAGGGTACT
66 CCAGTCTAAGATCAGA-CAGACCGAGGGTTGCGACCAGCAGGATCGGTAGCACGCAGGGGGGACT
* *
16621098 GGGTCGATCCCCAACTTGCGCATTCTGCCTCTCTGGCCAACTGAGCACCCGTACG
130 GGGCCGATCCCCGACTTGCGCATTCTGCCTCTCTGGCCAACTGAGCACCCGTACG
* * * *
16621153 CTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCAT-TCCATGTCTAACCATACGGAGTTCATT
1 CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACGAAGTTCATT
*** * * *
16621217 CCCAAAGTAAGATCAGACTGGACCAAGGGTTACGGTAGCAGGACCAGTAGCAAGATCGGTAGCAC
65 CCCAGTCTAAGATCAGAC-AGACCGAGGG-T----T-GC--GACC---AGCAGGATCGGTAGCAC
* * * * * * * * *
16621282 GCAGGGGGGA-TCGAGCCAATCCCCGGCTTGCGCATTCTGCCTCTCTGGCCGATTGAACGCTCGC
118 GCAGGGGGGACT-GGGCCGATCCCCGACTTGCGCATTCTGCCTCTCTGGCCAACTGAGCACCCGT
16621346 ACG
182 ACG
* *
16621349 CTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATCCCCAATCTAAGCATACGAAGTTCATTC
1 CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTC
* * * * * *
16621414 CCAGTCTAACATTAGACCAGACTGAGGGTTGC-AGCAACAGGATCGGTAGCACGCAGGGGGGACC
66 CCAGTCTAAGATCAGA-CAGACCGAGGGTTGCGACCAGCAGGATCGGTAGCACGCAGGGGGGACT
* * * * *
16621478 AGGCCGATCCTCGACTTACGCATTCTGCCTCTCTGGCCAGCTGAGCACCCGTATG
130 GGGCCGATCCCCGACTTGCGCATTCTGCCTCTCTGGCCAACTGAGCACCCGTACG
* * * * * *
16621533 CCCGCTTCGTGGGTTGGCTTAGGCATAGGGAGTTCAT-TCCATGTCTAAGC
1 CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGC
16621583 CCCAGCCAGA
Statistics
Matches: 345, Mismatches: 66, Indels: 38
0.77 0.15 0.08
Matches are distributed among these distances:
183 7 0.02
184 180 0.52
185 1 0.00
187 2 0.01
189 1 0.00
190 4 0.01
191 1 0.00
192 2 0.01
193 1 0.00
195 2 0.01
196 140 0.41
197 4 0.01
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Consensus pattern (184 bp):
CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTC
CCAGTCTAAGATCAGACAGACCGAGGGTTGCGACCAGCAGGATCGGTAGCACGCAGGGGGGACTG
GGCCGATCCCCGACTTGCGCATTCTGCCTCTCTGGCCAACTGAGCACCCGTACG
Found at i:16622436 original size:26 final size:26
Alignment explanation
Indices: 16622399--16622451 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16622389 GTTGACTTAG
16622399 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
16622425 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATCCCCAATCTAA
16622451 G
1 G
16622452 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:16622893 original size:159 final size:158
Alignment explanation
Indices: 16622427--16622894 Score: 489
Period size: 158 Copynumber: 2.9 Consensus size: 158
16622417 CAATCTAAGC
* * * * * *
16622427 ATACAGAGTTCATTCCCAGTCTAAGATCAGA-TCGGATCAAGGGTTGCGGTAGTAGGATCGACAG
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGACCGAGGGTTGTGGCAGCAGGATCGACAG
* * * * * *
16622491 CACGCAGGGGGGGATCGGGTCGATCCCCGGCTTGTGCATTCTACCTCTTCGGGCGACTGAGCGCC
65 CACGCA-GGGGGGATCGGGTCGATCCCTGGCTTGTGCATTCTGCCTCTCCGGTCGGCTAAGCGCC
* * ** **
16622556 CGCACACCCATTTTGTGGGTTGGGTTAGGT
129 CGAACACTCATTTCATGGGTTGACTTAGGT
* * *** ** *
16622586 ATAGGGAGTTCATT-TCATGTCTAACCCCCAG-CCAGACCGAGGGTTGTGGCAGC-GGAACCGAC
1 ATACGGAGTTCATTCCCA-GTCTAA-GATCAGACTGGACCGAGGGTTGTGGCAGCAGG-ATCGAC
* * * *
16622648 AGCATGCAGAGGGGATCGGGTCGATCCCTGACTTGTGCATTATGCCTCTCCGGTCGGCTCAA-CG
63 AGCACGCAGGGGGGATCGGGTCGATCCCTGGCTTGTGCATTCTGCCTCTCCGGTCGGCT-AAGCG
16622712 CCCGAACACTCATTTCATGGGTTGACTTAGGT
127 CCCGAACACTCATTTCATGGGTTGACTTAGGT
16622744 ATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCAGGATCGACAGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCAGGATCGACAGC
* ** * *
16622809 ACACAGTGGGGGA-CTAAGTCGGTCCCTGGCTTGTGCATTCTGCCTCTCCGGTCGGCTAAGCGTC
66 ACGCAG-GGGGGATC-GGGTCGATCCCTGGCTTGTGCATTCTGCCTCTCCGGTCGGCTAAGCGCC
* *
16622873 CGTACGCTCATTTCATGGGTTG
129 CGAACACTCATTTCATGGGTTG
16622895 GCATAGTCAT
Statistics
Matches: 249, Mismatches: 49, Indels: 22
0.78 0.15 0.07
Matches are distributed among these distances:
157 3 0.01
158 129 0.52
159 114 0.46
160 3 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (158 bp):
ATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCAGGATCGACAGC
ACGCAGGGGGGATCGGGTCGATCCCTGGCTTGTGCATTCTGCCTCTCCGGTCGGCTAAGCGCCCG
AACACTCATTTCATGGGTTGACTTAGGT
Found at i:16622907 original size:159 final size:158
Alignment explanation
Indices: 16622427--16622927 Score: 496
Period size: 159 Copynumber: 3.2 Consensus size: 158
16622417 CAATCTAAGC
* * * * * *
16622427 ATACAGAGTTCATTCCCA-GTCTAAGATCAGA-TCGGATCAAGGGTTGCGGTAGTAGGATCGACA
1 ATACGGAGTTCATT-CCATGTCTAAGATCAGACT-GGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * * * *
16622490 GCACGCAGGGGGGGATCGGGTCGATCCCCGGCTTGTGCATTCTACCTCTTCGGGCGACTGAGCGC
64 GCACGCA-GGGGGGATCGGGTCGATCCCTGGCTTGTGCATTCTGCCTCTCCGGTCGGCTAAGCGC
* * ** *
16622555 CCGCACACCCATTTTGTGGGTTGGGTTAGGT
128 CCGAACACTCATTTCATGGGTTGGCTTAGGT
* * *** ** *
16622586 ATAGGGAGTTCATTTCATGTCTAACCCCCAG-CCAGACCGAGGGTTGTGGCAGC-GGAACCGACA
1 ATACGGAGTTCATTCCATGTCTAA-GATCAGACTGGACCGAGGGTTGTGGCAGCAGG-ATCGACA
* * * *
16622649 GCATGCAGAGGGGATCGGGTCGATCCCTGACTTGTGCATTATGCCTCTCCGGTCGGCTCAA-CGC
64 GCACGCAGGGGGGATCGGGTCGATCCCTGGCTTGTGCATTCTGCCTCTCCGGTCGGCT-AAGCGC
*
16622713 CCGAACACTCATTTCATGGGTTGACTTAGGT
128 CCGAACACTCATTTCATGGGTTGGCTTAGGT
16622744 ATACGGAGTTCATTCCCA-GTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCAGGATCGACAG
1 ATACGGAGTTCATT-CCATGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCAGGATCGACAG
* ** * *
16622808 CACACAGTGGGGGA-CTAAGTCGGTCCCTGGCTTGTGCATTCTGCCTCTCCGGTCGGCTAAGCGT
65 CACGCAG-GGGGGATC-GGGTCGATCCCTGGCTTGTGCATTCTGCCTCTCCGGTCGGCTAAGCGC
* * *
16622872 CCGTACGCTCATTTCATGGGTTGGCATA-GT
128 CCGAACACTCATTTCATGGGTTGGCTTAGGT
* *
16622902 CATACGAAGTTTATTCCATGTCTAAG
1 -ATACGGAGTTCATTCCATGTCTAAG
16622928 CGTATGGAGT
Statistics
Matches: 276, Mismatches: 53, Indels: 26
0.78 0.15 0.07
Matches are distributed among these distances:
157 3 0.01
158 134 0.49
159 136 0.49
160 3 0.01
ACGTcount: A:0.21, C:0.25, G:0.30, T:0.25
Consensus pattern (158 bp):
ATACGGAGTTCATTCCATGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCAGGATCGACAGC
ACGCAGGGGGGATCGGGTCGATCCCTGGCTTGTGCATTCTGCCTCTCCGGTCGGCTAAGCGCCCG
AACACTCATTTCATGGGTTGGCTTAGGT
Found at i:16624379 original size:26 final size:26
Alignment explanation
Indices: 16624349--16624400 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16624339 GTTGGCTTAG
16624349 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16624375 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16624401 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16624589 original size:26 final size:26
Alignment explanation
Indices: 16624553--16624623 Score: 124
Period size: 26 Copynumber: 2.7 Consensus size: 26
16624543 AGGAATACAG
16624553 AGTTCATCCCCAGTCTAAGCACACGA
1 AGTTCATCCCCAGTCTAAGCACACGA
*
16624579 AGTTCATCCCCAGTCTAAGCACACGG
1 AGTTCATCCCCAGTCTAAGCACACGA
*
16624605 AGTTCATTCCCAGTCTAAG
1 AGTTCATCCCCAGTCTAAG
16624624 ATTGGACCAG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.28, C:0.32, G:0.17, T:0.23
Consensus pattern (26 bp):
AGTTCATCCCCAGTCTAAGCACACGA
Found at i:16626373 original size:26 final size:26
Alignment explanation
Indices: 16626337--16626389 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16626327 GTTGGCTTAG
16626337 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
16626363 GCATACTGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16626389 G
1 G
16626390 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16627099 original size:26 final size:26
Alignment explanation
Indices: 16627063--16627113 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16627053 TGACTTAGGC
16627063 ATACGGAGTTCATAT-CCAATCTAAGT
1 ATACGGAGTTCAT-TCCCAATCTAAGT
16627089 ATACGGAGTTCATTCCCAATCTAAG
1 ATACGGAGTTCATTCCCAATCTAAG
16627114 ATCAGATTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAATCTAAGT
Found at i:16627332 original size:184 final size:184
Alignment explanation
Indices: 16627035--16627456 Score: 524
Period size: 184 Copynumber: 2.3 Consensus size: 184
16627025 TGAGCGTCCT
* * * *
16627035 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATATCCA-ATCTAAGTATACGGAGTT
1 CACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCAT-TCCATGTCTAAGCATACGGAGTT
*** * *
16627099 CATTCCCAATCTAAGATCAGATTGAATCGAGGGCTACGACAGCAGGATCGATAACACGTAGGGGA
65 CATTCCCAATCTAAGATCAGACCAAACCGAGGGCTACGACAGCAGGATCGATAACACGCAGGGGA
** * * * *
16627164 GACTGGGCCAGTCC-CTGGCTTACGCATTCTGCCTCTCCGACCGACTGAGTACCTG
130 GACCAGG-CAGACCTCCGGCTTACGCATTCTGCCTCTCCGACCGACTGAGCACCCG
* *
16627219 CACGCTCGTTTCGTGGGGTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCATACGGAGTTC
1 CACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCATACGGAGTTC
* * * ** * * * *
16627284 ATTCCCAGTCTATGATCAGACCAAACCGAGGGTTGTGGCAGTAGGATCGATAGCACGCAGGGGGG
66 ATTCCCAATCTAAGATCAGACCAAACCGAGGGCTACGACAGCAGGATCGATAACACGCAGGGGAG
* * *
16627349 ACCAGGCTGACCTCCGGCTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCG
131 ACCAGGCAGACCTCCGGCTTACGCATTCTGCCTCTCCGACCGACTGAGCACCCG
* * *
16627403 CACGCCCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTGTAAGC
1 CACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGC
16627457 CCCAGCCGGA
Statistics
Matches: 203, Mismatches: 33, Indels: 4
0.85 0.14 0.02
Matches are distributed among these distances:
183 8 0.04
184 195 0.96
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (184 bp):
CACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCATACGGAGTTC
ATTCCCAATCTAAGATCAGACCAAACCGAGGGCTACGACAGCAGGATCGATAACACGCAGGGGAG
ACCAGGCAGACCTCCGGCTTACGCATTCTGCCTCTCCGACCGACTGAGCACCCG
Found at i:16628415 original size:183 final size:185
Alignment explanation
Indices: 16628129--16628634 Score: 583
Period size: 185 Copynumber: 2.8 Consensus size: 185
16628119 GTCGATCCAT
* * * *
16628129 GACTTGCGTATTTTGCC-TCTCTGGTCGCCTGAGGGCCTACATGCTCGTTTCATGGGTTGACTTA
1 GACTTGCGTATTTTGCCTTTTC-GGTCGGCTGAGCGCCTGCATGCTCGTTTCATGGGTTGACTTA
*** * *
16628193 GGCA-ACGGAGTTCATCCTTTGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGA
65 GGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGA
* * *
16628257 CCGAGGGTTGCGGTAGCAGGATCGGCAAAACGCA-GGGGAGA-TCGGGCCGATCCCC
130 CTGAGGGTTGCGGTAGCAGGATCGACAAAACACAGGGGGAGACT-GGGCCGATCCCC
* *
16628312 G-CTTGCGCATTTTGCCTTTTCGGTCGGCTGAGCGCCTGCATGCTCATTTCATGGGTTGACTTAG
1 GACTTGCGTATTTTGCCTTTTCGGTCGGCTGAGCGCCTGCATGCTCGTTTCATGGGTTGACTTAG
* * *
16628376 GCATAGGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCAAGTCTAAGATCGGATCGGAC
66 GCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* ** * * *
16628441 TGAGGGTTGTGGTAGCAGGATCGACAGCACATAGGGGGGGACTGGGTCGATCCCC
131 TGAGGGTTGCGGTAGCAGGATCGACAAAACACAGGGGGAGACTGGGCCGATCCCC
* * * * ** * * ** * *
16628496 GACTTACGTATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTTGTGCGTTGGCTTAG
1 GACTTGCGTATTTTGCCTTTTCGGTCGGCTGAGCGCCTGCATGCTCGTTTCATGGGTTGACTTAG
* * * *
16628561 GCATACGAAGTTCAT-TCCATGTCTAAGCATACAAAGTTCATTCCCTGTCTAAGATCGGACCGGA
66 GCATACGGAGTTCATCCCCA-GTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGA
*
16628625 CTGATGGTTG
130 CTGAGGGTTG
16628635 TGGCAGTAGG
Statistics
Matches: 272, Mismatches: 45, Indels: 10
0.83 0.14 0.03
Matches are distributed among these distances:
182 56 0.21
183 83 0.31
184 21 0.08
185 112 0.41
ACGTcount: A:0.20, C:0.25, G:0.28, T:0.26
Consensus pattern (185 bp):
GACTTGCGTATTTTGCCTTTTCGGTCGGCTGAGCGCCTGCATGCTCGTTTCATGGGTTGACTTAG
GCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
TGAGGGTTGCGGTAGCAGGATCGACAAAACACAGGGGGAGACTGGGCCGATCCCC
Found at i:16628597 original size:26 final size:26
Alignment explanation
Indices: 16628561--16628613 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16628551 GTTGGCTTAG
*
16628561 GCATACGAAGTTCATTCCATGTCTAA
1 GCATACAAAGTTCATTCCATGTCTAA
*
16628587 GCATACAAAGTTCATTCCCTGTCTAA
1 GCATACAAAGTTCATTCCATGTCTAA
16628613 G
1 G
16628614 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCATGTCTAA
Found at i:16628601 original size:185 final size:183
Alignment explanation
Indices: 16628171--16628784 Score: 561
Period size: 185 Copynumber: 3.3 Consensus size: 183
16628161 GGGCCTACAT
* * * *
16628171 GCTCGTTTCATGGGTTGACTTAGGCA-ACGGAGTTCA-TCCTTTGTCTAAGCATACGGAGTTCAT
1 GCTCATTTCATGCGTTGACTTAGGCATACGGAGTTCATTCC-ATGTCTAAGCATACAGAGTTCAT
* * * * ** *
16628234 TCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGTAGCAGGATCGGCAAAACGCAGGGGAGAT
65 TCCCAGTCTAAGATCGGACCGGACTGAGGGTTGTGGTAGCAGGATCGACAGCACACAGGGGAGAT
* * * * ** * *
16628299 CGGGCCGATCCCCGCTTGCGCATTTTGCCTTTTCGGTCGGCTGAGCGCCTGCAT
130 CGGGCCGATCCCCGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCAC
* * *
16628353 GCTCATTTCATGGGTTGACTTAGGCATAGGGAGTTCATCCCCA-GTCTAAGCATACAGAGTTCAT
1 GCTCATTTCATGCGTTGACTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACAGAGTTCAT
* * * *
16628417 TCCAAGTCTAAGATCGGATCGGACTGAGGGTTGTGGTAGCAGGATCGACAGCACATAGGGGGGGA
65 TCCCAGTCTAAGATCGGACCGGACTGAGGGTTGTGGTAGCAGGATCGACAGCACACA-GGGGAGA
* *
16628482 -CTGGGTCGATCCCCGACTTACGTATTCTGCCTCTCCGACCGGCTGAGCGCCCGCAC
129 TC-GGGCCGATCCCCG-CTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCAC
* ** * * *
16628538 GCTCGTTTTGTGCGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCATACAAAGTTCATT
1 GCTCATTTCATGCGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATT
* * * * *
16628603 CCCTGTCTAAGATCGGACCGGACTGATGGTTGTGGCAGTAGGATCAACAGCAAGATTGCCAGCAC
66 CCCAGTCTAAGATCGGACCGGACTGAGGGTTGTGGTAGCAGGATCGACAGC---A----CA-CA-
* ** * * * * *
16628668 GTTGGGGGGATCGGGCCGATCCCTAACTTGCGAATTCTACCTCTCCGGCCGGTTGAGCGCCCGCA
122 ---GGGGAGATCGGGCCGATCCC-CGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCA
16628733 C
183 C
* * * * * *
16628734 ACCCATTTCATGGGTTGGCTTAGGCAAAGGGAGTTCATTCCATGTCTAAGC
1 GCTCATTTCATGCGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGC
16628785 CCCAGCCGGA
Statistics
Matches: 351, Mismatches: 61, Indels: 26
0.80 0.14 0.06
Matches are distributed among these distances:
182 25 0.07
183 77 0.22
184 21 0.06
185 129 0.37
188 1 0.00
192 2 0.01
193 1 0.00
196 94 0.27
197 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.25
Consensus pattern (183 bp):
GCTCATTTCATGCGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGTTCATT
CCCAGTCTAAGATCGGACCGGACTGAGGGTTGTGGTAGCAGGATCGACAGCACACAGGGGAGATC
GGGCCGATCCCCGCTTACGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCAC
Found at i:16628953 original size:26 final size:26
Alignment explanation
Indices: 16628916--16628968 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16628906 GTTGACTTAG
16628916 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
16628942 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
16628968 G
1 G
16628969 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:16629179 original size:343 final size:341
Alignment explanation
Indices: 16628505--16629628 Score: 1320
Period size: 343 Copynumber: 3.2 Consensus size: 341
16628495 CGACTTACGT
* * * * * *
16628505 ATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTTGTGCGTTGGCTTAGGCATACGAA
1 ATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAA
* * * *
16628570 GTTCAT-TCCATGTCTAAGCATACAAAGTTCATTCCCTGTCTAAGATCGGACCGGACTGATGGTT
66 GTTCATCCCCA-GTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGA-CGGACTGAGGGTT
* * * * * *
16628634 GTGGCAGTAGGATCAACAGCAAGATTGCCAGCACGTTGGGGGGATCGGGCCGATCCCTAACTTGC
129 GCGGCAGTAAGAT-----G---G---G-CAGCACGTAGGGGGGA-CCGGACGATCCCTGACTTGC
* * * * *
16628699 GAATTCTACCTCTCCGGCCGGTTGAGCGCCCGCAC-ACCCATTTCATGGGTTGGCTTAGGCAAAG
181 GCATTCTGCCTCTCCGGACGGCTGAGCGCCCGCACGA-CCATTTCATGGGTTGGCTTAGGCATAG
* *
16628763 GGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAACGGGACCGGCAGCACGT
245 GGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGGCAGCACGC
*
16628828 AAAGGTGGACCGGGCCGATCCACGGCTTGTGC
310 AGAGGTGGACCGGGCCGATCCACGGCTTGTGC
* * * *
16628860 ATTCTGCCTCTCCGGCCGACTGAGTGCCAGCGCGCTCGTTTCGTGGGTTGACTTAGGCATACGAA
1 ATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAA
* *
16628925 GTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTA
66 GTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGA-CGGACTGAGGGTTG
*
16628990 CGGCAGTAAGATGGGCAGCACGTAGGGGGGACCGGACAGAT-CCTCGACTTGCGCTTTCTGCCTC
130 CGGCAGTAAGATGGGCAGCACGTAGGGGGGACCGGAC-GATCCCT-GACTTGCGCATTCTGCCTC
* * * ** * * *
16629054 TCCGGTCGGCTGAGAGCCCGCACGTCTGTTTCTTGGGTTCGCCTAGGCATAGGGAGTTCATTCCA
193 TCCGGACGGCTGAGCGCCCGCACGACCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCA
* * * * *
16629119 TGTCTAAGCCCCAGCTGGATCGAGGGTTGTGGCAGCGAGACTGACAGCACGCAGAGGTGGACCGG
258 TGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGGTGGACCGG
* *
16629184 GCCGAGCCATGGCTTGTGC
323 GCCGATCCACGGCTTGTGC
* * * *
16629203 ATTCTGCCTCTCCGGCCGACTGAGCGCCCGTACACTCATTTCATGGGTTGACATAGGCATACGAA
1 ATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAA
*
16629268 GTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTGTAAGATCGGACTGGACTGAGGGTTG
66 GTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGAC-GGACTGAGGGTTG
* * * * ** * * * ** *
16629333 CAGCAGCAAGATCGACAGCACACAAGGGGGACCGGGTCGATCCCTGGCTTAAGCACTCTGCCTCT
130 CGGCAGTAAGATGGGCAGCACGTAGGGGGGACC-GGACGATCCCTGACTTGCGCATTCTGCCTCT
*
16629398 CC-GACTGGCTGAGCGCCCGCACGACCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCA
194 CCGGAC-GGCTGAGCGCCCGCACGACCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCA
* *
16629462 TGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGGTAGCACGCAGAGGGGGACCGG
258 TGTCTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGGTGGACCGG
* * *
16629527 GTCGATCCCCGGCTTGGGC
323 GCCGATCCACGGCTTGTGC
* * * * * * * *
16629546 ATTATGCCTCTTCGGCCGGCTCAGCGCCTGCACGCTCATTTTGTGGGTTGACTTATGCATACGGA
1 ATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAA
*
16629611 GTTCATTCCCAGTCTAAG
66 GTTCATCCCCAGTCTAAG
16629629 ATCAGACCGG
Statistics
Matches: 660, Mismatches: 101, Indels: 28
0.84 0.13 0.04
Matches are distributed among these distances:
342 10 0.02
343 517 0.78
344 7 0.01
347 1 0.00
350 1 0.00
355 121 0.18
356 3 0.00
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (341 bp):
ATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAA
GTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACGGACTGAGGGTTGC
GGCAGTAAGATGGGCAGCACGTAGGGGGGACCGGACGATCCCTGACTTGCGCATTCTGCCTCTCC
GGACGGCTGAGCGCCCGCACGACCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGT
CTAAGCCCCAGCCGGACCGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGAGGTGGACCGGGCC
GATCCACGGCTTGTGC
Found at i:16629289 original size:26 final size:26
Alignment explanation
Indices: 16629259--16629311 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16629249 GTTGACATAG
16629259 GCATAC-GAAGTTCATCCCCAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
* *
16629285 GCATACAGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16629311 G
1 G
16629312 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16629573 original size:159 final size:159
Alignment explanation
Indices: 16629326--16629789 Score: 531
Period size: 159 Copynumber: 2.9 Consensus size: 159
16629316 GACTGGACTG
* * * * *
16629326 AGGGTTGCAGCAGCAAGATCGACAGCACACAAGGGGGACCGGGTCGATCCCTGGCTTAAGCACTC
1 AGGGTTGCGGCAGCAAGACCGACAGCACGCAAGGGGGACCGGGTCGATCCCCGGCTTAAGCATTC
* * *
16629391 TGCCTCTCCGACTGGCTGAGCGCCCGCACGAC-CATTTCGTGGGTTGGCTTAGGCATAGGGAGTT
66 TGCCTCTCCGGCTGGCTGAGCGCCTGCACG-CTCATTTCGTGGGTTGGCTTAGGCATACGGAGTT
* *
16629455 CATTCCATGTCTAAGCCCCAG-CCGGACCG
130 CATTCCATGTCTAAGCACCAGACCGGACCA
* ** ** **
16629484 AGGGTTGTGGCAGCGGGACCGGTAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTTGGGCATT
1 AGGGTTGCGGCAGCAAGACCGACAGCACGCA-AGGGGGACCGGGTCGATCCCCGGCTTAAGCATT
* * * * * * *
16629549 ATGCCTCTTCGGCCGGCTCAGCGCCTGCACGCTCATTTTGTGGGTTGACTTATGCATACGGAGTT
65 CTGCCTCTCCGGCTGGCTGAGCGCCTGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTT
*
16629614 CATTCCCA-GTCTAAG-ATCAGACCGGACCA
130 CATT-CCATGTCTAAGCACCAGACCGGACCA
* * * * * * *
16629643 AGGGTTGCGGGAGCAAGATCGACAGCACGCAAGGGGGGATCGGGCCGGTCCCCGACTTACGCATT
1 AGGGTTGCGGCAGCAAGACCGACAGCACGCAA-GGGGGACCGGGTCGATCCCCGGCTTAAGCATT
* * * * *
16629708 CTGCCTCTCCGGCTTGCTGAGCACCTGCACGCTCGTTTCGTAGGTTGGCTTAGGCATATGGAGTT
65 CTGCCTCTCCGGCTGGCTGAGCGCCTGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTT
16629773 CATTCCATGTCTAAGCA
130 CATTCCATGTCTAAGCA
16629790 TACAGAGTTC
Statistics
Matches: 249, Mismatches: 50, Indels: 12
0.80 0.16 0.04
Matches are distributed among these distances:
158 31 0.12
159 214 0.86
160 4 0.02
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.21
Consensus pattern (159 bp):
AGGGTTGCGGCAGCAAGACCGACAGCACGCAAGGGGGACCGGGTCGATCCCCGGCTTAAGCATTC
TGCCTCTCCGGCTGGCTGAGCGCCTGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTC
ATTCCATGTCTAAGCACCAGACCGGACCA
Found at i:16630513 original size:26 final size:26
Alignment explanation
Indices: 16630483--16630535 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16630473 GTTGACTTAG
16630483 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
16630509 GCATACGAAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
16630535 G
1 G
16630536 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:16634906 original size:21 final size:21
Alignment explanation
Indices: 16634856--16634895 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
16634846 TTGCGAGATA
*
16634856 GCATGGAGGCCATACGCCATG
1 GCATGGAGGCCATACACCATG
16634877 GCATGGAGGCCATACACCA
1 GCATGGAGGCCATACACCA
16634896 GCGGATGGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.28, C:0.30, G:0.30, T:0.12
Consensus pattern (21 bp):
GCATGGAGGCCATACACCATG
Found at i:16636337 original size:9 final size:9
Alignment explanation
Indices: 16636311--16636340 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
16636301 GTCACCCTTA
*
16636311 AAGGTGCTA
1 AAGGTGCTG
16636320 AAGGTGCTG
1 AAGGTGCTG
16636329 AAGGTGCTG
1 AAGGTGCTG
16636338 AAG
1 AAG
16636341 ACCTTTAGTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.30, C:0.10, G:0.40, T:0.20
Consensus pattern (9 bp):
AAGGTGCTG
Found at i:16641295 original size:26 final size:26
Alignment explanation
Indices: 16641259--16641308 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
16641249 GTTGACTTAG
*
16641259 GCATACGGAGTTCATCCCCAGTCTGA
1 GCATACAGAGTTCATCCCCAGTCTGA
*
16641285 GCATACAGAGTTCATTCCCAGTCT
1 GCATACAGAGTTCATCCCCAGTCT
16641309 AAGATCAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTGA
Found at i:16641647 original size:159 final size:158
Alignment explanation
Indices: 16641285--16641649 Score: 367
Period size: 159 Copynumber: 2.3 Consensus size: 158
16641275 CCCAGTCTGA
* * * * * *
16641285 GCATACAGAGTTCATTCCCAGTCTAAGATCAAACTGGACCGAGGGTTGTGGTAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGACCGACA
* * * * * * *
16641350 GCACGCAGGGGGGATCGAGCCGATCCTCAATTTATGCATTCTGCCTCTCCGGTCAGCTGAGCACC
66 GCACGCAGGGGGGACCGAGCCGATCCCCAACTTACGCATTATGCCACTCCGGTCAGCTCAGCACC
* **
16641415 CACACGCCCGTTTCATGGGTTGGCTTAG
131 CACACGCCCATTTCATGGGTTAACTTAG
* ** * * *
16641443 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGCAGCGGGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGACCGAGGGTTGTGGCAGCAGGACCGA
* ** * * *
16641506 CAGCACGTAGAGGGGGACCGAGCCGATCCCCGGCTTGCGCATTATGCCACTTCGG-CTGGCTCAG
64 CAGCACGCAG-GGGGGACCGAGCCGATCCCCAACTTACGCATTATGCCACTCCGGTC-AGCTCAG
** * *
16641570 TGCCCGCACGCTCATTTCATGGGTTAACTTAG
127 CACCCACACGCCCATTTCATGGGTTAACTTAG
* *
16641602 GTATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTG
16641650 CTGTAGCAAG
Statistics
Matches: 163, Mismatches: 38, Indels: 11
0.77 0.18 0.05
Matches are distributed among these distances:
157 3 0.02
158 57 0.35
159 100 0.61
160 3 0.02
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGACCGACA
GCACGCAGGGGGGACCGAGCCGATCCCCAACTTACGCATTATGCCACTCCGGTCAGCTCAGCACC
CACACGCCCATTTCATGGGTTAACTTAG
Found at i:16648156 original size:301 final size:301
Alignment explanation
Indices: 16647614--16648217 Score: 764
Period size: 301 Copynumber: 2.0 Consensus size: 301
16647604 CTCTCCGACC
* *
16647614 GACTGAGTGCCCACACGCTCGTTCCGTGGGTTGACTTAGGTATACGGAGTTTATCCCAAGTCTAA
1 GACTGAGTGCCCACACCCTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTTATCCCAAGTCTAA
* * ** *
16647679 GCATGCAGAGTTCATTTTCAGTCTAAGATAGGATCGGACCGAGGGTTGCAGCAGCAAGATCGACA
66 GCATACAGACTTCATTCCCAGTCTAAGATAGGACCGGACCGAGGGTTGCAGCAGCAAGATCGACA
* * * * * * * *
16647744 GCACGCAGGAGGGATCGGGCCGATCCCCGGCTTACGTATTCTGCCTCTTCGATCGGTAAAGCAGC
131 GCACACAAGAAGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGCTAAAGCACC
* * * * * *
16647809 CGCACACCTATTTCATGGATTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCGG
196 CGCACACCCATTTCATGGATTGGCTTAGGCATAAGGAGTTCATTCCACGTCTAAGCCCCAGCCAG
* * *
16647874 ACCGAGGGTTGTGGTAACGAGACCGGCAGCATGCAGAGGGG
261 ACCGAGGGTTATGGCAACGAGACCGGAAGCATGCAGAGGGG
* * *
16647915 GACTGAGTGTCCACACCCTCGTTTCGTGGGTTGACTTAGGCATA-GGAAGTTTATCCCCAGTCTA
1 GACTGAGTGCCCACACCCTCGTTCCGTGGGTTGACTTAGGCATACGG-AGTTTATCCCAAGTCTA
* * * *
16647979 AGCATACAGACTTCATTCCCAGTCTAAGATCA-GACCGGATCGAGGGTTGCAGCAGTAGGATCGG
65 AGCATACAGACTTCATTCCCAGTCTAAGAT-AGGACCGGACCGAGGGTTGCAGCAGCAAGATCGA
* * *
16648043 TAGCACACAAGAAGGATCGGGCCGATCCTCGGCTTACGCATTCTGCCTCTCCGACCGACT-GAGC
129 CAGCACACAAGAAGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCG-CTAAAGC
** * * *
16648107 ACCCGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCACGTCTAAGCCCCAGC
193 ACCCGCACACCCATTTCATGGATTGGCTTAGGCATAAGGAGTTCATTCCACGTCTAAGCCCCAGC
* ** * *
16648172 CAGATCGAGGGTTATGGCAGTGGGACTGGAAGCATGCAGAGGGG
258 CAGACCGAGGGTTATGGCAACGAGACCGGAAGCATGCAGAGGGG
16648216 GA
1 GA
16648218 TCGAGCCGTT
Statistics
Matches: 256, Mismatches: 44, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
300 2 0.01
301 252 0.98
302 2 0.01
ACGTcount: A:0.23, C:0.25, G:0.29, T:0.23
Consensus pattern (301 bp):
GACTGAGTGCCCACACCCTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTTATCCCAAGTCTAA
GCATACAGACTTCATTCCCAGTCTAAGATAGGACCGGACCGAGGGTTGCAGCAGCAAGATCGACA
GCACACAAGAAGGATCGGGCCGATCCCCGGCTTACGCATTCTGCCTCTCCGACCGCTAAAGCACC
CGCACACCCATTTCATGGATTGGCTTAGGCATAAGGAGTTCATTCCACGTCTAAGCCCCAGCCAG
ACCGAGGGTTATGGCAACGAGACCGGAAGCATGCAGAGGGG
Found at i:16648594 original size:342 final size:342
Alignment explanation
Indices: 16647936--16648561 Score: 776
Period size: 342 Copynumber: 1.8 Consensus size: 342
16647926 CACACCCTCG
* *
16647936 TTTCGTGGGTTGACTTAGGCATAGGAAGTTTATCCCCAGTCTAAGCATACAGACTTCATTCCCAG
1 TTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACAGACTTCATTCCCAG
* * * *** *
16648001 TCTAAGATCAGACCGGATCGAGGGTTGCAGCAGTAGGATCGGTAGCACACAAGAAGGATCGGGCC
66 TCTAAGATCAGACCGAATCGAGGGTTACAGCAGTAGGATCGGTAGCACACAAGAAGGACCAAACA
* * * * *
16648066 GATCCTCGGCTTACGCATTCTGCCTCTCCGACCGACTGAGCACCCGCATGCCCGTTTCGTGGGTT
131 GATCCCCAGCTTACGCATTCTGCCTCTCCGACCGACTGAACACCCGCACGCCCATTTCGTGGGTT
* * *
16648131 GGCTTAGGCATAAGGAGTTCATTCCACGTCTAAGCCCCAGCCAGATCGAGGGTTATGGCAGTGGG
196 GGCTTAGGCATAAGGAGTTCATTCCACGTCTAAGCCCCAGCCAGACCGAGGGTTATGGCAGCGAG
**
16648196 ACTGGAAGCATGCAGAGGGGGATCGAGCCGTTCCCTAGCTTGCGCATTCTGCCTCTCCGGTCGAC
261 ACTGGAAGCACACAGAGGGGGATCGAG-CGTTCCCTAGCTTGCGCATTCTGCCTCTCCGGTCGAC
16648261 TGAGCGCCTGCACGCTCA
325 TGAGCGCCTGCACGCTCA
* * * *
16648279 TTTCGTGGGTTGACTTAGGTATACGAA-TTCATCCCCAGTCTATGCATACGGAGTTCATTCCCAG
1 TTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACAGACTTCATTCCCAG
* * ** * *
16648343 TCTAAGATC-GAACCGAATCGAGGGTTACGGCAGTAGTATC-GTCAGCATGCAGGAGGGACCAAA
66 TCTAAGATCAG-ACCGAATCGAGGGTTACAGCAGTAGGATCGGT-AGCACACAAGAAGGACCAAA
* * * * * *
16648406 CAGATCCCCATCTTACGCATTCTGCCTCTTCGGCCGACTGAACGCCCGTACGCCCATTTTGTGGG
129 CAGATCCCCAGCTTACGCATTCTGCCTCTCCGACCGACTGAACACCCGCACGCCCATTTCGTGGG
* * *** *
16648471 TTGGCTTAGGCAT-AGCGAGTTCATTCCATGTCTAAGCCCTAGTTGGACCGAGGGTTGTGGTCA-
194 TTGGCTTAGGCATAAG-GAGTTCATTCCACGTCTAAGCCCCAGCCAGACCGAGGGTTATGG-CAG
* * *
16648534 CGAGATTGGCAGCACATAGAGGGGGATC
257 CGAGACTGGAAGCACACAGAGGGGGATC
16648562 AGGTTGATCC
Statistics
Matches: 235, Mismatches: 44, Indels: 9
0.82 0.15 0.03
Matches are distributed among these distances:
341 5 0.02
342 203 0.86
343 27 0.11
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (342 bp):
TTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACAGACTTCATTCCCAG
TCTAAGATCAGACCGAATCGAGGGTTACAGCAGTAGGATCGGTAGCACACAAGAAGGACCAAACA
GATCCCCAGCTTACGCATTCTGCCTCTCCGACCGACTGAACACCCGCACGCCCATTTCGTGGGTT
GGCTTAGGCATAAGGAGTTCATTCCACGTCTAAGCCCCAGCCAGACCGAGGGTTATGGCAGCGAG
ACTGGAAGCACACAGAGGGGGATCGAGCGTTCCCTAGCTTGCGCATTCTGCCTCTCCGGTCGACT
GAGCGCCTGCACGCTCA
Found at i:16649050 original size:26 final size:26
Alignment explanation
Indices: 16649011--16649062 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16649001 TGGTTCGATA
16649011 TTAGACTCGAAATGAACTCTGTATGC
1 TTAGACTCGAAATGAACTCTGTATGC
* *
16649037 TTAGACTTGGAATGAACTCTGTATGC
1 TTAGACTCGAAATGAACTCTGTATGC
16649063 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (26 bp):
TTAGACTCGAAATGAACTCTGTATGC
Found at i:16649249 original size:26 final size:26
Alignment explanation
Indices: 16649211--16649262 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16649201 CTGGTCCGAT
16649211 CTTAGACTAGGAATGAACTCTATATG
1 CTTAGACTAGGAATGAACTCTATATG
*
16649237 CTTAGAC-ATGGAATGAACTCTGTATG
1 CTTAGACTA-GGAATGAACTCTATATG
16649263 TCTAAGCCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.33, C:0.15, G:0.21, T:0.31
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTATATG
Found at i:16649270 original size:201 final size:195
Alignment explanation
Indices: 16648784--16649318 Score: 617
Period size: 196 Copynumber: 2.7 Consensus size: 195
16648774 GCTATTGATT
* * * * * *
16648784 CTACTGTCGCAACCCTCGGTCTGATCCAATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTA
1 CTACTATCGCAACCCTCGGTCTGGTCCGATCTTAGACTAGGAATGAACTCTGTATGCTTAGACT-
* * * * * *
16648849 GGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACAAGCGTGCAGGCGCTCAACCGATCGGAG
65 GGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAATCGATCGGAG
** * * * * *
16648914 AGGCAGAATGCGTAAGTCGGGGATCAGCCCGGTCCCTCCTGCGTGCTGTCAATCCTGCTGTTAGT
130 AGGCAGAATGCACAAGTCGAGGATCAGCCCAGTCCCTCCTGCATGCTGTCAATCATGCTGCTAGT
16648979 C
195 C
* * * * *
16648980 CTACTATCGCAACCCTCGGTATGGTTCGATATTAGACTCGAAATGAACTCTGTATGCTTAGACTT
1 CTACTATCGCAACCCTCGGTCTGGTCCGATCTTAGACTAGGAATGAACTCTGTATGCTTAGAC-T
*
16649045 GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAATCGATCGGAG
65 GGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAATCGATCGGAG
* * *
16649110 AGGCAGAATGCACAAGTCGAGGATC-GACCTAGTCCC-CTCTGCATGTTG-CTGATCATGCTGCT
130 AGGCAGAATGCACAAGTCGAGGATCAG-CCCAGTCCCTC-CTGCATGCTGTC-AATCATGCTGCT
*
16649172 GGTC
192 AGTC
* * * *
16649176 TTACTGTCGTAACCCTCAGTCCAGTCTGGTCCGATCTTAGACTAGGAATGAACTCTATATGCTTA
1 CTACTATCGCAACCCTC-G----GTCTGGTCCGATCTTAGACTAGGAATGAACTCTGTATGCTTA
* * **
16649241 GACATGGAATGAACTCTGTATGTCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGTCGGC
61 GAC-TGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAATCGAT
16649306 CGGAGAGGCAGAA
125 CGGAGAGGCAGAA
16649319 AGCGCAAGCC
Statistics
Matches: 287, Mismatches: 43, Indels: 13
0.84 0.13 0.04
Matches are distributed among these distances:
195 3 0.01
196 174 0.61
197 2 0.01
201 108 0.38
ACGTcount: A:0.25, C:0.26, G:0.26, T:0.24
Consensus pattern (195 bp):
CTACTATCGCAACCCTCGGTCTGGTCCGATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTG
GAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAATCGATCGGAGA
GGCAGAATGCACAAGTCGAGGATCAGCCCAGTCCCTCCTGCATGCTGTCAATCATGCTGCTAGTC
Found at i:16651134 original size:26 final size:26
Alignment explanation
Indices: 16651093--16651145 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16651083 CCGGTCTGAT
16651093 CTTAGACTGGAAATGAACTCCATATG
1 CTTAGACTGGAAATGAACTCCATATG
** *
16651119 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCATATG
16651145 C
1 C
16651146 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCATATG
Found at i:16652594 original size:159 final size:157
Alignment explanation
Indices: 16652241--16652741 Score: 477
Period size: 158 Copynumber: 3.2 Consensus size: 157
16652231 CTCAATCCGG
* * *
16652241 TCCGATCTTAGACTGAGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCG
1 TCCGAGCTTAGACTG-GAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCA
** *
16652306 CTCAGCCAGTCGAAGAGGCAAAATACGCAAGCTGGGGATCGGCCCGATCCCTCCTGCGTGCTGTC
65 CTCAGCCAGTCGAAGAGGCAAAATACGCAAGCCAGGGATCGGCCCGATCCCTCCTGCGTGCTGCC
***
16652371 GATCCTACTGTTGCAACCCTCGGTCTGA
130 GATCCTACTGCCACAACCCTCGGTCTGA
* * * * * *
16652399 TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACTAAATGAGCATTCGGGCA
1 TCCGAGCTTAGACT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCA
* * * * * * * *
16652464 CTGAGTCGGTCGGAGAGGCATAATGCGCAAGCCAGGGATTGGCCCGATCTGCCT-CTTCGTGCTG
65 CTCAGCCAGTCGAAGAGGCAAAATACGCAAGCCAGGGATCGGCCCGATC--CCTCCTGCGTGCTG
* *
16652528 CCGGTCCTGCTGCCACAACCCTCGGTCTGA
128 CCGATCCTACTGCCACAACCCTCGGTCTGA
* * * * *
16652558 -CTGGGGCTTAGACATGGAATGAACTCCTTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGC
1 TC-CGAGCTTAGAC-TGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCGGGC
* * * * * * * ** *
16652622 GCTCAACCCA-TCGAAGAGGCAGAATGCGCAAGTCAGGGATCAGCTCGATCCCTCCTATGTGCTA
64 ACTC-AGCCAGTCGAAGAGGCAAAATACGCAAGCCAGGGATCGGCCCGATCCCTCCTGCGTGCTG
* * * * *
16652686 CCGATCCTGCTACCGCAACCCTCAGTCTGG
128 CCGATCCTACTGCCACAACCCTCGGTCTGA
* * *
16652716 TTCGATCTTAGATCAGGAATGAACTC
1 TCCGAGCTTAGA-CTGGAATGAACTC
16652742 TGTATGCTTA
Statistics
Matches: 277, Mismatches: 57, Indels: 18
0.79 0.16 0.05
Matches are distributed among these distances:
157 3 0.01
158 147 0.53
159 121 0.44
160 6 0.02
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.21
Consensus pattern (157 bp):
TCCGAGCTTAGACTGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCAC
TCAGCCAGTCGAAGAGGCAAAATACGCAAGCCAGGGATCGGCCCGATCCCTCCTGCGTGCTGCCG
ATCCTACTGCCACAACCCTCGGTCTGA
Found at i:16652751 original size:26 final size:26
Alignment explanation
Indices: 16652722--16652772 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
16652712 CTGGTTCGAT
*
16652722 CTTAGA-TCAGGAATGAACTCTGTATG
1 CTTAGACTCAGG-ATGAACTCCGTATG
*
16652748 CTTAGACTGAGGATGAACTCCGTAT
1 CTTAGACTCAGGATGAACTCCGTAT
16652773 TCCTAAGTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTCAGGATGAACTCCGTATG
Found at i:16653376 original size:11 final size:11
Alignment explanation
Indices: 16653360--16653386 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
16653350 GGCTCTCTAG
16653360 CGATGCTCCGA
1 CGATGCTCCGA
16653371 CGATGCTCCGA
1 CGATGCTCCGA
16653382 CGATG
1 CGATG
16653387 GTGCCCCAGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.19, C:0.33, G:0.30, T:0.19
Consensus pattern (11 bp):
CGATGCTCCGA
Found at i:16654093 original size:159 final size:158
Alignment explanation
Indices: 16653667--16654246 Score: 454
Period size: 159 Copynumber: 3.7 Consensus size: 158
16653657 GGAGAGGCAT
* * ** *
16653667 AATGCGCAAGCCATGGATCGGCCCGTTCCCCCTCTGTGTGCTGTCGGTCCCGTTGCCACAACCCT
1 AATGCGCAAGCCAGGGATCGGCCCGATCCCCCTCTACGTGCTGTCGGTCCCGCTGCCACAACCCT
* * * * *
16653732 CGGTCTGACTAGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACCAAACGGGCG
66 CGATCTG-GTAGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATCAAACGAGCA
* *
16653797 TGCAGGCGCTCAACCGACCGGAGAGGTAG
130 TGCAGGCACTCAACCGACCGGAAAGGTAG
* * * * * * * *
16653826 AATGCGCAAGTCAGGGA-CTGGCTCGGTCCCCC-CTACGTACTGTCGATCCTGCTACCGCAACCC
1 AATGCGCAAGCCAGGGATC-GGCCCGATCCCCCTCTACGTGCTGTCGGTCCCGCTGCCACAACCC
* ** * * * * * *
16653889 TCGATCTGGTCTGATCTTAGA-TTACGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAG
65 TCGATCTGGT-AGGGCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATCAAACGAG
*** * **
16653953 CATTTGGGCACTGAACCGGTCGGAAAGGTAG
128 CATGCAGGCACTCAACCGACCGGAAAGGTAG
* * * * *
16653984 AATGCGTAAGCCAGGGATCGGCCCGATCCCCCTCTACATGCTGTCGGTCCCACTGCCACAAACTT
1 AATGCGCAAGCCAGGGATCGGCCCGATCCCCCTCTACGTGCTGTCGGTCCCGCTGCCACAACCCT
* * * *
16654049 CGATCCGGTGAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATAAAACGGGCA
66 CGATCTGGT-AGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATCAAACGAGCA
* * ** ** * * *
16654114 TACGGGTGCTCAGGCGACCGGAGAGGAAA
130 TGCAGGCACTCAACCGACCGGAAAGGTAG
* ** ** **
16654143 AATGCACAAGCC-GAGGATCGGCCCGA-CCCCC-CTACGTGCTACCTATCCTACTGCCACAACCC
1 AATGCGCAAGCCAG-GGATCGGCCCGATCCCCCTCTACGTGCTGTCGGTCCCGCTGCCACAACCC
* * ** *
16654205 TCGGTCTGGTCTGATCTTAGAC-TGGGAATGAACTCCGTATGC
65 TCGATCTGGT-AGGGCTTAGACAT-GGAATGAACTCCATATGC
16654247 TTAGACTGGG
Statistics
Matches: 325, Mismatches: 88, Indels: 18
0.75 0.20 0.04
Matches are distributed among these distances:
156 1 0.00
157 58 0.18
158 125 0.38
159 140 0.43
160 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.25, T:0.20
Consensus pattern (158 bp):
AATGCGCAAGCCAGGGATCGGCCCGATCCCCCTCTACGTGCTGTCGGTCCCGCTGCCACAACCCT
CGATCTGGTAGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATCAAACGAGCAT
GCAGGCACTCAACCGACCGGAAAGGTAG
Found at i:16654256 original size:26 final size:26
Alignment explanation
Indices: 16654220--16654272 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16654210 CTGGTCTGAT
16654220 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
16654246 CTTAGACTGGGGATGCACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16654272 C
1 C
16654273 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16654467 original size:26 final size:26
Alignment explanation
Indices: 16654416--16654468 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
16654406 CCGGTCTGAT
**
16654416 CTTAGACTGGGAATGAACTTTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16654442 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
16654468 C
1 C
16654469 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16655231 original size:500 final size:497
Alignment explanation
Indices: 16654395--16655471 Score: 1263
Period size: 500 Copynumber: 2.2 Consensus size: 497
16654385 CTTACTATCG
** * *
16654395 TAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTTTATATGCTTAGACATGGAATGAAC
1 TAACCCTTGGTCCGATCTGATCTTAGACTGGGAATGAACTTCATATGCTTAGACATGGAATGAAC
** * * *
16654460 TCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGCGCTCAGTCGGACAGAGAGGCAGAATG
66 TCCGTATGCCTAAGCCAACCCAAAAAACGAGCGTACGGCGCTCAGCCGGACAGAGAGGCAGAATG
* * ** * *
16654525 CGCAAGTCGGGGATCGACCCGGTCCCCCCTGCGTACATCGATCCTACTGCCGTAACCCTTGGTCT
131 CGCAAGTCGGGGACCGACCCGGTCCCCCCTACGTACATCGATCCTACTGCCACAACCCTCGGTCC
*
16654590 GGTCCGATCTTAGACTACAAATAAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCATTCAGG
196 GGTCCGATCTTAGACTACAAATAAACTTCGTATGCCTAAGTCAACCAACGAAATGAGCATTCAGG
* * * * * *
16654655 CGCTGAGCCGATCGGAGAGGCATAATGCACAAGCAGGGGATCGGCCTGATCTACCTCTGTATGTT
261 CGCTGAGCAGACCGGAGAGGCATAATGCACAAGCAGGGGATCAGCCTGATCCACCTCTGCATGCT
* * *
16654720 GTCGGTCCCGCTGCCACAACCCTCGATCTGACTGGGGCTTAGACATGGAATGAACACACTATGCC
326 GCCAGTCCCGCTGCCACAACCCTCGATCTGACTGGGGCTTAGACATGGAATAAACACACTATG-C
* * *
16654785 T-AAGCCAACCCACAAAACGGACATGTA-GGTGCTCAACCG-GCTGGAGAGGCAGAATGCGTAAG
390 TGAAGCCAACCCACAAAACGGAC--GTACGGTGCTCAACCGATC-GGAGAGGAAGAATGCGCAAG
* * *
16654847 TCGGGGATCGGCCCGGTCCCCCTACGTGCTACCGATCTTA-CTGCCA
452 CCGGGGATCAGCCCGGTCCCCCTACGTGCTACCGATCCTATC-GCCA
* *
16654893 TAACCCTTGGTCCGATCTGATCTTAGACTGGGGATGAACTTCGTATGCTTAGACATGGAATGAAC
1 TAACCCTTGGTCCGATCTGATCTTAGACTGGGAATGAACTTCATATGCTTAGACATGGAATGAAC
* * * *
16654958 TCCGTATACCTAAGCCAACCTAAAAAAGGAGCGTACGGGCGCTCAGCCGGGCAGAGAGGCAGAAT
66 TCCGTATGCCTAAGCCAACCCAAAAAACGAGCGTAC-GGCGCTCAGCCGGACAGAGAGGCAGAAT
* * * * * * *
16655023 GTGCAAGTCGGGGACC-AGCCTGGTCCCTCCTACGTGCTGTCGATCCTGCTGCTACAACCCTCGG
130 GCGCAAGTCGGGGACCGA-CCCGGTCCCCCCTACGTAC-ATCGATCCTACTGCCACAACCCTCGG
* * *** * *
16655087 TCCGGTCTGATCTTAGAGTGGGAATGAAC-TCTGTATGCCTAAG-CTAACCAACGAAATGAGCGT
193 TCCGGTCCGATCTTAGACTACAAATAAACTTC-GTATGCCTAAGTC-AACCAACGAAATGAGCAT
** * * * * *
16655150 TTGGGCGCTGAGCAGGCCGGAGAGGTATAATGCGCAAGCCA-GGGATCAGCCTGATCCCCCTTTG
256 TCAGGCGCTGAGCAGACCGGAGAGGCATAATGCACAAG-CAGGGGATCAGCCTGATCCACCTCTG
* * * *
16655214 CGTGCTGCCAGTCCCGCTGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATAAACTCCC
320 CATGCTGCCAGTCCCGCTGCCACAACCCTCGATCTGACTGGGGCTTAGACATGGAATAAACACAC
** * * ** *
16655279 TATGCTGAAGCCAACCCATGAAATGGGCGTACGGGTGCTCAGTCGATCGGAGAGGAAGAATGTGC
385 TATGCTGAAGCCAACCCACAAAACGGACGTAC-GGTGCTCAACCGATCGGAGAGGAAGAATGCGC
* ** * *
16655344 AAGCCGGGGATCAGCCCGGTCCCCCTGCGTGCTGTCGATCCTATCGTCG
449 AAGCCGGGGATCAGCCCGGTCCCCCTACGTGCTACCGATCCTATCGCCA
* * * * *
16655393 TAACTCTTGGTCTGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGAC-TGGGGATGAA
1 TAACCCTTGGTCCGATCTGATCTTAGACTGGGAATGAACTTCATATGCTTAGACAT-GGAATGAA
16655457 CTCCGTATGCCTAAG
65 CTCCGTATGCCTAAG
16655472 TCAGCCCATG
Statistics
Matches: 485, Mismatches: 82, Indels: 22
0.82 0.14 0.04
Matches are distributed among these distances:
498 92 0.19
499 61 0.13
500 328 0.68
501 4 0.01
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.21
Consensus pattern (497 bp):
TAACCCTTGGTCCGATCTGATCTTAGACTGGGAATGAACTTCATATGCTTAGACATGGAATGAAC
TCCGTATGCCTAAGCCAACCCAAAAAACGAGCGTACGGCGCTCAGCCGGACAGAGAGGCAGAATG
CGCAAGTCGGGGACCGACCCGGTCCCCCCTACGTACATCGATCCTACTGCCACAACCCTCGGTCC
GGTCCGATCTTAGACTACAAATAAACTTCGTATGCCTAAGTCAACCAACGAAATGAGCATTCAGG
CGCTGAGCAGACCGGAGAGGCATAATGCACAAGCAGGGGATCAGCCTGATCCACCTCTGCATGCT
GCCAGTCCCGCTGCCACAACCCTCGATCTGACTGGGGCTTAGACATGGAATAAACACACTATGCT
GAAGCCAACCCACAAAACGGACGTACGGTGCTCAACCGATCGGAGAGGAAGAATGCGCAAGCCGG
GGATCAGCCCGGTCCCCCTACGTGCTACCGATCCTATCGCCA
Found at i:16655450 original size:26 final size:26
Alignment explanation
Indices: 16655414--16655466 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16655404 CTGATCCGAT
16655414 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
16655440 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16655466 C
1 C
16655467 CTAAGTCAGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16655857 original size:26 final size:26
Alignment explanation
Indices: 16655821--16655873 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16655811 TCGGTCTGAT
*
16655821 CTTAGACTGGGGATGAACTCCTTATG
1 CTTAGACTGGGGATGAACTCCGTATG
16655847 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
16655873 C
1 C
16655874 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:16655931 original size:185 final size:184
Alignment explanation
Indices: 16655616--16657541 Score: 800
Period size: 185 Copynumber: 10.3 Consensus size: 184
16655606 CTGCTGCCGT
*
16655616 AACCCTCGGTCCGGTCCGATCTTTGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACT
1 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGAC-TGGAATGAACT
* * * * * *
16655681 CTGTACGCTTAAGCCAACCCACAAAACGAGCATGTGGGTGCTCAGCCGATCGGAGAGGTATAATG
65 CCGTACGCCTAAGTCAACCCACAAAACGAGCATGCGGGCGCTCAGCCGATCGGAGAGGCATAATG
* * * * *
16655746 CGCAAG-CAGGGGACCGACT-TGGTCCCCCACTACGTGCTATCGATCCTACTG-TAGC
130 CACAAGCCA-GGGACCG-CTCCGATCCCCCACTACGTGCTATCGATCCCACTGCCA-C
* * * * *
16655801 AACCCTCGGTTCGGTCTGATCTTAGACTGGGGATGAACTCCTTATGCTTAGACTGGGGATGAACT
1 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACT-GGAATGAACT
* * * *
16655866 CCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGTTCAGTCGATCGGAGAGGCATAATG
65 CCGTACGCCTAAGTCAACCCACAAAACGAGCATGCGGGCGCTCAGCCGATCGGAGAGGCATAATG
* * *
16655931 CACAAGCCAGGGATCGGTCCGATCCCCCTCTACGTGCTATCGATCCCACTGCCAC
130 CACAAGCCAGGGACCGCTCCGATCCCCCACTACGTGCTATCGATCCCACTGCCAC
* * * * * *
16655986 AACCCTCGATCCGATCCAATCTTAGACTGGGAATGATCTCCGTATGCTTAGACTAGGTATGAACT
1 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACT-GGAATGAACT
* * ** * * ** **
16656051 TCGTACGCCTAAGTTAACCCATGAAACGAGCATGCGGACGCTCAGCCGACCAAAGAGGCAGGATG
65 CCGTACGCCTAAGTCAACCCACAAAACGAGCATGCGGGCGCTCAGCCGATCGGAGAGGCATAATG
* * ****** * *** * * * *
16656116 CACAAGCC-GGG---GAT-CGAACGGGTGGTAGGTGGGCTCAAGCACATCT-TCA-
130 CACAAGCCAGGGACCGCTCCGATCCCCCACTACGTGCTATCGATCCCA-CTGCCAC
* ** ** *
16656165 TA-TTTTTG-CC-ATGCCGATCTTAGA-TCGGGAATGAACTCCATATGCTTAGACATGGAATGAA
1 AACCCTCGGTCCGGT-CCGATCTTAGACT-GGGAATGAACTCCATATGCTTAGAC-TGGAATGAA
* * * * * * * *
16656226 CTCCGTACGCCTAAGGCAACCCACGAAATGAGCGTGCGGGCACTCAGCCGGTCGAAGAGGCAGAA
63 CTCCGTACGCCTAAGTCAACCCACAAAACGAGCATGCGGGCGCTCAGCCGATCGGAGAGGCATAA
* ** * ** ** *
16656291 TGCACAAGCC-GAGGATCAGC-CTAATCCCCC-CATGCGTGCTATCGATCTTACTATCGC
128 TGCACAAGCCAG-GGA-CCGCTCCGATCCCCCAC-TACGTGCTATCGATCCCACTGCCAC
* * * * * * *
16656348 AACCCTTGATTCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACT
1 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACT-GGAATGAACT
* * ** ** *
16656413 CCGTATGCCTAAGTCAGCCCATGAAACGAGTGTGCTGGCGCTCAGCCGGCCAGAGAGGCCGATCG
65 CCGTACGCCTAAGTCAACCCACAAAACGAGCATGC-GG-G--C-G-C--TC----A-GCCGATCG
* * * ** * ** *
16656478 GAGAGGTAGAATGC-CAAGCCAAGGATTGGCT-CGATCCCTC-CTGTGTGCT-GCTGATCCTGCT
117 GAGAGGCATAATGCACAAGCCAGGGA-CCGCTCCGATCCCCCACTACGTGCTATC-GATCC--C-
*
16656539 GCTGGTCCTACTATC
177 ACT-G--C--C-A-C
* **
16656554 GTAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGGATAGACATGGAATGAA
1 --AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGAC-TGGAATGAA
* * * * * * * *
16656619 CTCCGTACGCCTAAGCCAACCCACGAAACGAGCATGCGAGTGCTCAACCGGTCAGAGAGGCAGAA
63 CTCCGTACGCCTAAGTCAACCCACAAAACGAGCATGCGGGCGCTCAGCCGATCGGAGAGGCATAA
* * * * * * ** **
16656684 TGCACAAGCCGGGGACTGAC-CCGGTCCCCCACTGCGTGCTGTGGATCCTGCTATCAC
128 TGCACAAGCCAGGGACCG-CTCCGATCCCCCACTACGTGCTATCGATCCCACTGCCAC
* * * * * *
16656741 AACCTTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATAAACT
1 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACT-GGAATGAACT
* ** * *
16656806 CCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCGCTCAGTCGATCAGAGAGGCCGATCG
65 CCGTACGCCTAAGTCAACCCACAAAACGAGCATGCGGGCGCTCAGCCGATCGGAGAGG-C-AT--
* * ** * * * * **
16656871 GAGAGGCAAAATGCCAAGTCGAGGATTAGC-CTGATCCTCC-TTGCGTGCTATCGATCTTACTGG
126 -A-ATGCACAA-GCC-A---G-GGA-CCGCTCCGATCCCCCACTACGTGCTATCGATCCCAC---
16656934 TAGTCCTACTATC
179 T-G--C--C-A-C
* *
16656947 GTAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAA
1 --AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGAC-TGGAATGAA
* * ** * * * * * *
16657012 CTCTGTACGCCTAAGCCAACCCATGAAATGAGCATACGGGCACTTAGCCGATTGGAGAGGCAGAA
63 CTCCGTACGCCTAAGTCAACCCACAAAACGAGCATGCGGGCGCTCAGCCGATCGGAGAGGCATAA
** * * * * * * ** ** *
16657077 TGCGTAAGTCGGGGATCGGC-CC-AGTCTCTCATTACGTGCTATCGATCCTGCTATCGC
128 TGCACAAGCCAGGGA-CCGCTCCGA-TCCCCCACTACGTGCTATCGATCCCACTGCCAC
* * * * *
16657134 CACCCTCGATCCGGTCCGATCTTAGACTGGGATTGATCTCCGTATGCTTAGACTGGATATGAACT
1 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGA-ATGAACT
* * ** * * * * * * **
16657199 TCGTATGCCTAAGTCAACCCATGAAATGAGCGTGTGGACGCTCAGCCGACCAGAGAGGCAGGATG
65 CCGTACGCCTAAGTCAACCCACAAAACGAGCATGCGGGCGCTCAGCCGATCGGAGAGGCATAATG
* * * ****** * * * * * * **
16657264 CGCAAGTCAGGGA----T-CGAACGGGTGGTAGGTGGGT-TCAAGCACATTTTCA-
130 CACAAGCCAGGGACCGCTCCGATCCCCCACTACGT-GCTATCGATCCCACTGCCAC
* ***
16657313 TA---TTTTTACC-GTCTCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAA
1 AACCCTCGGT-CCGGTC-CGATCTTAGACTGGGAATGAACTCCATATGCTTAGAC-TGGAATGAA
* * * * * * * * * *
16657374 CTCCGTACGTCTATGGCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCCACCGAAGAGGCAGAA
63 CTCCGTACGCCTAAGTCAACCCACAAAACGAGCATGCGGGCGCTCAGCCGATCGGAGAGGCATAA
* * * ** * * * *
16657439 TGCGCAAGCC-GAAGACTGGCT-CGATCCCCC-CTGTGTGCTATCAATCCTACTACCGC
128 TGCACAAGCCAG-GGAC-CGCTCCGATCCCCCACTACGTGCTATCGATCCCACTGCCAC
* *
16657495 AACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
1 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGC
16657542 CTAAGTCAAC
Statistics
Matches: 1315, Mismatches: 322, Indels: 209
0.71 0.17 0.11
Matches are distributed among these distances:
176 9 0.01
177 211 0.16
178 8 0.01
179 2 0.00
180 32 0.02
181 20 0.02
182 20 0.02
183 1 0.00
184 45 0.03
185 564 0.43
186 9 0.01
187 4 0.00
188 1 0.00
189 3 0.00
190 1 0.00
191 7 0.01
192 3 0.00
193 1 0.00
194 4 0.00
195 21 0.02
196 55 0.04
197 62 0.05
198 20 0.02
199 3 0.00
200 1 0.00
201 2 0.00
202 6 0.00
203 2 0.00
204 2 0.00
205 1 0.00
206 4 0.00
207 2 0.00
208 187 0.14
209 2 0.00
ACGTcount: A:0.25, C:0.27, G:0.26, T:0.22
Consensus pattern (184 bp):
AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGAATGAACTC
CGTACGCCTAAGTCAACCCACAAAACGAGCATGCGGGCGCTCAGCCGATCGGAGAGGCATAATGC
ACAAGCCAGGGACCGCTCCGATCCCCCACTACGTGCTATCGATCCCACTGCCAC
Found at i:16656055 original size:26 final size:26
Alignment explanation
Indices: 16656006--16656055 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
16655996 CCGATCCAAT
* *
16656006 CTTAGACTGGGAATGATCTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
16656032 CTTAGACTAGGTATGAACTTCGTA
1 CTTAGACTAGGAATGAACTCCGTA
16656056 CGCCTAAGTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16656295 original size:362 final size:370
Alignment explanation
Indices: 16655818--16657541 Score: 1369
Period size: 393 Copynumber: 4.6 Consensus size: 370
16655808 GGTTCGGTCT
* * * * *
16655818 GATCTTAGA-CTGGGGATGAACTCCTTATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTC
1 GATCTTAGATCTGGGAATGAACTCCATATGCTTAGACAT-GGAATGAACTCCGTACGCCTAAGCC
* * * * * *
16655881 AACCCACAAAACGAGCGTGCGGGCGTTCAGTCGATCGGAGAGGCATAATGCACAAGCCAGGGATC
65 AACCCACGAAATGAGCGTGCGGGCGCTCAGCCGATCGAAGAGGCAGAATGCACAAGCC-GGGATC
* * ** * *
16655946 GGTCCGATCCCCCTCTACGTGCTATCGATCCCACTGCCACAACCCTCGATCCGATCCAATCTTAG
129 GG-CCGATCCCCC-CTGCGTGCTATCGATCCTACTATCGCAACCCTCGATCCGATCCGATCTTAG
* * * * * *
16656011 ACTGGGAATGATCTCCGTATGCTTAGACTAGGTATGAACTTCGTACGCCTAAGTTAACCCATGAA
192 ACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAA
*
16656076 ACGAGCATGCGGACGCTCAGCCGACCAAAGAGG-C-A-G-GATGCACAAGCC-GG-GGATCGAAC
257 ACGAGCATGCGGACGCTCAGCCGACCAGAGAGGCCGACGAGATGCACAAGCCAGGAGGATCGAAC
** *
16656135 GGGTGGTAGGTG-GGCTCAAGC-ACAT-CT-TCATATTTTTGCCATGC-C
322 GGGTCCTAGGTGCGGCTCAAGCTAC-TGCTGTCATATTTTTACCATGCTC
*
16656180 GATCTTAGATC-GGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTACGCCTAAGGCA
1 GATCTTAGATCTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTACGCCTAAGCCA
* * *
16656244 ACCCACGAAATGAGCGTGCGGGCACTCAGCCGGTCGAAGAGGCAGAATGCACAAGCCGAGGATCA
66 ACCCACGAAATGAGCGTGCGGGCGCTCAGCCGATCGAAGAGGCAGAATGCACAAGCCG-GGATCG
* * * * *
16656309 GCCTAATCCCCCCATGCGTGCTATCGATCTTACTATCGCAACCCTTGATTCGATCCAATCTTAGA
130 GCC-GATCCCCCC-TGCGTGCTATCGATCCTACTATCGCAACCCTCGATCCGATCCGATCTTAGA
*
16656374 CTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAGCCCATGAAA
193 CTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAA
** * *
16656439 CGAGTGTGCTGG-CGCTCAGCCGGCCAGAGAGGCCGATCGGAGAGGTAGAATGCCAAGCCAAGGA
258 CGAGCATGC-GGACGCTCAGCCGACCAGAGAGGCCGA-C-GAGA--T-GCA---CAAGCC-AGGA
* * ** * * ** * ** * *
16656503 TTGGCTCGATC-CCTCCT-GTGTGCTGCTGATCCTGCTGCTGGTCCTACTATCGTAACCCTCGGT
313 --GGATCGAACGGGTCCTAG-GTGCGGCTCAAGCTACTGCT-GT-C-A-TATTTTTACCAT--G-
16656566 CCAGTCC
368 -C--T-C
**
16656573 GATCTTAGA-CTGGGAATGAACTCCATATGGATAGACATGGAATGAACTCCGTACGCCTAAGCCA
1 GATCTTAGATCTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTACGCCTAAGCCA
* * * * * *
16656637 ACCCACGAAACGAGCATGCGAGTGCTCAACCGGTC-AGAGAGGCAGAATGCACAAGCCGGGGA-C
66 ACCCACGAAATGAGCGTGCGGGCGCTCAGCCGATCGA-AGAGGCAGAATGCACAAGCC-GGGATC
* * * * * * * *
16656700 TGACCCGGTCCCCCACTGCGTGCTGTGGATCCTGCTATCACAACCTTC-AGTCCGATCTGATCTT
129 -G-GCCGATCCCCC-CTGCGTGCTATCGATCCTACTATCGCAACCCTCGA-TCCGATCCGATCTT
* *
16656764 AGACTGGGAATGAACTCCATATGCTTAGACTGGGGATAAACTCCGTATGCCTAAGTCAACCCATG
190 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATG
* * * * *
16656829 AAACGAGCATGCGGGCGCTCAGTCGATCAGAGAGGCCGATCGGAGAGGCAAAATGCCAAGTCGAG
255 AAACGAGCATGCGGACGCTCAGCCGACCAGAGAGGCCGA-C-GAGATGCACAA-GCC-AG--GAG
* * * * *** * * * ** *
16656894 GAT-TAGCCTGATCCTCCTTGCGTGCTATCGATCTTACTGGTAGTCCTACTATCGTAACCCTCGA
314 GATCGA-ACGGGTCCTAGGTGCG-GC--TCAAGC-TACTGCT-GT-C-A-TATTTTTA--C-C-A
*
16656958 TCCGATCC
366 T--GCT-C
*
16656966 GATCTTAGA-CTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCTGTACGCCTAAGCCA
1 GATCTTAGATCTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTACGCCTAAGCCA
* * * * * * * ** *
16657030 ACCCATGAAATGAGCATACGGGCACTTAGCCGATTGGAGAGGCAGAATGCGTAAGTCGGGGATCG
66 ACCCACGAAATGAGCGTGCGGGCGCTCAGCCGATCGAAGAGGCAGAATGCACAAG-CCGGGATCG
* * ** * * * *
16657095 GCCCAGTCTCTCATTACGTGCTATCGATCCTGCTATCGCCACCCTCGATCCGGTCCGATCTTAGA
130 GCCGA-TC-CCCCCTGCGTGCTATCGATCCTACTATCGCAACCCTCGATCCGATCCGATCTTAGA
* * ** *
16657160 CTGGGATTGATCTCCGTATGCTTAGACTGGATATGAACTTCGTATGCCTAAGTCAACCCATGAAA
193 CTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAA
* * * * *
16657225 TGAGCGTGTGGACGCTCAGCCGACCAGAGAGG-C-A-G-GATGCGCAAGTCA-G-GGATCGAACG
258 CGAGCATGCGGACGCTCAGCCGACCAGAGAGGCCGACGAGATGCACAAGCCAGGAGGATCGAACG
** * * *
16657284 GGTGGTAGGTG-GGTTCAAGC-ACAT--TTTCATATTTTTACCGT-CTC
323 GGTCCTAGGTGCGGCTCAAGCTAC-TGCTGTCATATTTTTACCATGCTC
* * *
16657328 GATCTTAGA-CTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTACGTCTATGGCA
1 GATCTTAGATCTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTACGCCTAAGCCA
* * * *
16657392 ACCCACGAAATGAGCGTGCGGGCGCTCAGCCCACCGAAGAGGCAGAATGCGCAAGCCGAAGA-CT
66 ACCCACGAAATGAGCGTGCGGGCGCTCAGCCGATCGAAGAGGCAGAATGCACAAGCCG-GGATC-
* * * *
16657456 GGCTCGATCCCCCCTGTGTGCTATCAATCCTACTACCGCAACCCTCGGTCCGATCCGATCTTAGA
129 GGC-CGATCCCCCCTGCGTGCTATCGATCCTACTATCGCAACCCTCGATCCGATCCGATCTTAGA
16657521 CTGGGAATGAACTCCGTATGC
193 CTGGGAATGAACTCCGTATGC
16657542 CTAAGTCAAC
Statistics
Matches: 1090, Mismatches: 199, Indels: 147
0.76 0.14 0.10
Matches are distributed among these distances:
361 71 0.07
362 356 0.33
363 8 0.01
364 1 0.00
366 1 0.00
367 2 0.00
368 3 0.00
370 6 0.01
371 3 0.00
372 1 0.00
373 1 0.00
374 7 0.01
375 2 0.00
376 3 0.00
377 5 0.00
378 5 0.00
379 14 0.01
380 4 0.00
381 10 0.01
382 3 0.00
383 1 0.00
384 1 0.00
385 8 0.01
386 2 0.00
387 10 0.01
388 11 0.01
389 8 0.01
390 6 0.01
391 1 0.00
392 11 0.01
393 511 0.47
394 9 0.01
395 1 0.00
396 1 0.00
397 3 0.00
ACGTcount: A:0.25, C:0.27, G:0.26, T:0.22
Consensus pattern (370 bp):
GATCTTAGATCTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTACGCCTAAGCCA
ACCCACGAAATGAGCGTGCGGGCGCTCAGCCGATCGAAGAGGCAGAATGCACAAGCCGGGATCGG
CCGATCCCCCCTGCGTGCTATCGATCCTACTATCGCAACCCTCGATCCGATCCGATCTTAGACTG
GGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGA
GCATGCGGACGCTCAGCCGACCAGAGAGGCCGACGAGATGCACAAGCCAGGAGGATCGAACGGGT
CCTAGGTGCGGCTCAAGCTACTGCTGTCATATTTTTACCATGCTC
Found at i:16656404 original size:26 final size:26
Alignment explanation
Indices: 16656368--16656420 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16656358 TCGATCCAAT
16656368 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16656394 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16656420 C
1 C
16656421 CTAAGTCAGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16656797 original size:26 final size:26
Alignment explanation
Indices: 16656761--16656813 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16656751 CCGATCTGAT
*
16656761 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
* *
16656787 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCATATG
16656813 C
1 C
16656814 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:16657183 original size:26 final size:26
Alignment explanation
Indices: 16657154--16657206 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16657144 CCGGTCCGAT
*
16657154 CTTAGACTGGGAT-TGATCTCCGTATG
1 CTTAGACT-GGATATGAACTCCGTATG
*
16657180 CTTAGACTGGATATGAACTTCGTATG
1 CTTAGACTGGATATGAACTCCGTATG
16657206 C
1 C
16657207 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 4 0.17
26 20 0.83
ACGTcount: A:0.23, C:0.19, G:0.25, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGATATGAACTCCGTATG
Found at i:16657650 original size:158 final size:158
Alignment explanation
Indices: 16657357--16657730 Score: 484
Period size: 158 Copynumber: 2.4 Consensus size: 158
16657347 ACTCCATATG
* * * *
16657357 CTTAGACAT-GGAATGAACTCCGTACGTCTATGGCAACCCACGAAATGAGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAG
* * * **
16657421 CCCACCGAAGAGGCAGAATGCGCAAGCCGAAGACTGGCTCGATCCCCCCTGTGTGCTATCAATCC
65 CCCACCGAAGAGGCAGAATGCGCAAGCCGAAGACTGACCCGATCCCCCATACGTGCTATCAATCC
*
16657486 TACTACCGCAACCCTCGGTCCGATCCGAT
130 TACTACCGCAACCCTCAGTCCGATCCGAT
*
16657515 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
*** * ** * *
16657580 CTGTCGAAGAGGCAGAATGCGCAAGTCGGGGA-TCGACCCGATCCCCCATACGTGCTGTCGATCC
66 CCACCGAAGAGGCAGAATGCGCAAGCCGAAGACT-GACCCGATCCCCCATACGTGCTATCAATCC
* * *
16657644 TGCTACCGCAACGCTCAGTCCGATTCGAT
130 TACTACCGCAACCCTCAGTCCGATCCGAT
* *
16657673 CTTAGAAC-GAGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGC
1 CTTAG-ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGC
16657731 ACACAGTTGG
Statistics
Matches: 188, Mismatches: 25, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
157 2 0.01
158 184 0.98
159 2 0.01
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.18
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
CCACCGAAGAGGCAGAATGCGCAAGCCGAAGACTGACCCGATCCCCCATACGTGCTATCAATCCT
ACTACCGCAACCCTCAGTCCGATCCGAT
Found at i:16658314 original size:159 final size:158
Alignment explanation
Indices: 16657878--16658380 Score: 470
Period size: 159 Copynumber: 3.2 Consensus size: 158
16657868 TGGAGAGGCA
* *
16657878 GTATGCCTAAGTCAACCCACGAAATGAGCGTTCGGGTGCTGAGCTGATCGGAGAGGCATAAT-GT
1 GTATGCCTAAGTCAACCCATGAAATGAGCGTTCGGGTGCTGAGCTGATCAGAGAGGCATAATCGT
* * *
16657942 GCATGCCGAGGAT-TGACTC-GATCTCCCTCTGCGTGTTGTCGGTCCTGTTG-CACCAACCTTCG
66 -CA-GCCGAGGATCAGACTCAG-TCCCCCTCTGCGTGTTGTCGGTCCTGCTGCCA-CAACC-TCG
* * *
16658004 ATTTGATCTGATCTTAGACTGGGATTGAACCCT
126 GTCTGATCTGATCTTAGACTGGGAATGAACCCT
* * * * *
16658037 GTATGCCTAAGTTAACCCATGAAATAAGCGTTCGGGTGCTGAGCCGGTCAGAGAGGCAGAATGCG
1 GTATGCCTAAGTCAACCCATGAAATGAGCGTTCGGGTGCTGAGCTGATCAGAGAGGCATAAT-CG
* * * * * * * * * *
16658102 TAAGCTGGGGA-CCGACCCAGTCCCCC-CTTGTGTGCTATCGATCCTGCTCCCACAAGCCTCGGT
65 TCAGCCGAGGATCAGACTCAGTCCCCCTC-TGCGTGTTGTCGGTCCTGCTGCCACAA-CCTCGGT
* *
16658165 CTGGTCTGATCTTAGACTGGGAATGAACTCT
128 CTGATCTGATCTTAGACTGGGAATGAACCCT
* * **
16658196 GTATGCCTAAGTCAACCCATAAAACGAGCGTTCGGGCACTGAGCTGATCAGAGAGGCATAATACG
1 GTATGCCTAAGTCAACCCATGAAATGAGCGTTCGGGTGCTGAGCTGATCAGAGAGGCATAAT-CG
* * *
16658261 TCAGCCGAGGATCAG-TTCAGTCCCCCTCTGCGTGTTGTAGGTCCCGCTGCCACAACCCTCGGTC
65 TCAGCCGAGGATCAGACTCAGTCCCCCTCTGCGTGTTGTCGGTCCTGCTGCCACAA-CCTCGGTC
* **
16658325 CGA-CTGGGGCTTAGACAT-GGAATGAACTTCC-
129 TGATCT-GATCTTAGAC-TGGGAATGAAC--CCT
* *
16658356 -TATGCCTAAGCCAACCCACGAAATG
1 GTATGCCTAAGTCAACCCATGAAATG
16658381 GACGTACGGG
Statistics
Matches: 274, Mismatches: 57, Indels: 26
0.77 0.16 0.07
Matches are distributed among these distances:
158 3 0.01
159 258 0.94
160 10 0.04
161 3 0.01
ACGTcount: A:0.23, C:0.27, G:0.26, T:0.24
Consensus pattern (158 bp):
GTATGCCTAAGTCAACCCATGAAATGAGCGTTCGGGTGCTGAGCTGATCAGAGAGGCATAATCGT
CAGCCGAGGATCAGACTCAGTCCCCCTCTGCGTGTTGTCGGTCCTGCTGCCACAACCTCGGTCTG
ATCTGATCTTAGACTGGGAATGAACCCT
Found at i:16658542 original size:26 final size:26
Alignment explanation
Indices: 16658493--16658543 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
16658483 TGGTTCGATT
* **
16658493 TTAGACTGGGAATGAATTTTGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
16658519 TTAGACTGGGGATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
16658544 TCTATGTCAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.25, C:0.12, G:0.29, T:0.33
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:16661032 original size:159 final size:159
Alignment explanation
Indices: 16660743--16661174 Score: 510
Period size: 159 Copynumber: 2.7 Consensus size: 159
16660733 AACTCCATAT
** * *
16660743 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * * ** *
16660808 TTGGTCGGAGAGGCAGAATGTGTAAGCCAGGGATCAACTCGGTCCCCCTCTGTGTGCTGCCGGTC
66 CTGGCCGAAGAGGCAGAATGCGTAAGCCAGGGATCAACCCGGTCCCCCTCTACGTGCTACCGGTC
16660873 CCGCTGCCACAACCCTTGGTT-CAGCTGGG
131 CCGCTGCCACAACCCTT-GTTCCAGCTGGG
** * * *
16660902 GCTTAGACATGGAATGAACTCCCTATGCCTAAATGAACCCACGAAACGAGCGTTCGGGCATTGAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * *
16660967 CTGGCCGAAGAGGCATAATGCGTAAG-CTGAGGATCGACCCGGTCCCCCTCTACGTGCTACCGGT
66 CTGGCCGAAGAGGCAGAATGCGTAAGCCAG-GGATCAACCCGGTCCCCCTCTACGTGCTACCGGT
*
16661031 CCTGCTGCCACAACCCTTGTTCCAGCTGGG
130 CCCGCTGCCACAACCCTTGTTCCAGCTGGG
* * * ***
16661061 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGTGTTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCACGAAACGAGCGTGCGGGCACTCAG
** ** * * *
16661126 -TCGGCCGGTGAGGCAGAATGCACAAGCCGGGGATCAGCCCGATCCCCCT
66 CT-GGCCGAAGAGGCAGAATGCGTAAGCCAGGGATCAACCCGGTCCCCCT
16661175 GCGTGCTGTC
Statistics
Matches: 230, Mismatches: 39, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
158 6 0.03
159 222 0.97
160 2 0.01
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCACGAAACGAGCGTGCGGGCACTCAG
CTGGCCGAAGAGGCAGAATGCGTAAGCCAGGGATCAACCCGGTCCCCCTCTACGTGCTACCGGTC
CCGCTGCCACAACCCTTGTTCCAGCTGGG
Found at i:16661271 original size:26 final size:26
Alignment explanation
Indices: 16661219--16661271 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16661209 CCGATCCGAT
* *
16661219 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCACATG
* *
16661245 CTTAGACTGGGGATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCACATG
16661271 C
1 C
16661272 CAAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCACATG
Found at i:16665796 original size:26 final size:26
Alignment explanation
Indices: 16665767--16665819 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16665757 CCGGTCTGAT
*
16665767 CTTAGACTGGGA-ATGAACTCTGTATG
1 CTTAGA-TGGGAGATGAACTCCGTATG
*
16665793 CTTAGATTGGAGATGAACTCCGTATG
1 CTTAGATGGGAGATGAACTCCGTATG
16665819 C
1 C
16665820 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 4 0.17
26 20 0.83
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGATGGGAGATGAACTCCGTATG
Found at i:16666040 original size:198 final size:197
Alignment explanation
Indices: 16665676--16666057 Score: 577
Period size: 198 Copynumber: 1.9 Consensus size: 197
16665666 CGCTCAGCCG
* * * * *
16665676 GTCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCATGGTCCCCCCTGTGTGCTGTCGATCCTGC
1 GTCGGAGAGGCAGAATACGCAAGCCAGGGATCAACATAGTCCCCCCTGCGTGCTGTCGATCCTAC
* * *
16665741 TACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGATTGGAGA
66 TACCGCAACCCTCGATCCGATCTGATCTTACACTGGGAATGAACTCCGTATGCTTAGATTGGAGA
* * *
16665806 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACTGGCGTTCAGCCGATCAGAAAGGT
131 TGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAGCCGATCAGAAAGGT
16665871 CA
196 CA
** * *
16665873 GTCGGAGAGGCAGAATACGCAAGTCGGGGGATCAACCTAGTCCCCCCTGCGTGTTGTCGATCCTA
1 GTCGGAGAGGCAGAATACGCAAG-CCAGGGATCAACATAGTCCCCCCTGCGTGCTGTCGATCCTA
* *
16665938 CTACCGTAACCCTCGATCTGATCTGATCTTACACTGGGAATGAACTCCGTATGCTTAGATATGGA
65 CTACCGCAACCCTCGATCCGATCTGATCTTACACTGGGAATGAACTCCGTATGCTTAGAT-TGGA
*
16666003 -ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCG
129 GATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAGCCG
16666058 GCCGGAGAAG
Statistics
Matches: 165, Mismatches: 18, Indels: 3
0.89 0.10 0.02
Matches are distributed among these distances:
197 22 0.13
198 139 0.84
199 4 0.02
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (197 bp):
GTCGGAGAGGCAGAATACGCAAGCCAGGGATCAACATAGTCCCCCCTGCGTGCTGTCGATCCTAC
TACCGCAACCCTCGATCCGATCTGATCTTACACTGGGAATGAACTCCGTATGCTTAGATTGGAGA
TGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAGCCGATCAGAAAGGT
CA
Found at i:16666515 original size:26 final size:26
Alignment explanation
Indices: 16666464--16666516 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16666454 CTGGTCCTAT
*
16666464 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16666490 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCATATG
16666516 C
1 C
16666517 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16666698 original size:26 final size:26
Alignment explanation
Indices: 16666661--16666713 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16666651 CCAGTCTGAT
*
16666661 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
*
16666687 CTTAGACAGGGAATGAACTTCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
16666713 C
1 C
16666714 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:16667167 original size:26 final size:26
Alignment explanation
Indices: 16667138--16667188 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16667128 CTGATCCGAT
16667138 CTTAGACTGG-GAATGAACTCCGTATC
1 CTTAGACTGGAG-ATGAACTCCGTATC
*
16667164 CTTAGACTGGAGATGAACTTCGTAT
1 CTTAGACTGGAGATGAACTCCGTAT
16667189 GCCTAGGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGAGATGAACTCCGTATC
Found at i:16667473 original size:674 final size:670
Alignment explanation
Indices: 16666158--16668528 Score: 2546
Period size: 674 Copynumber: 3.5 Consensus size: 670
16666148 CTTAGACCAA
*
16666158 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCACTGAGCCGACCGGAGA
1 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCGCTGAGCCGACCGGAGA
* ** * * * *
16666223 GGCATAATGCATAAGTCGGGGATCGGCCCGATCCCCCTCTATGT-CTACC-AGTGCCGCTGCCAC
66 GGCATAATACGCAAGTCGAGGATCGACCCGATCCCCCTCTACGTGCTACCGA-TACCGCTGCCAC
* * *
16666286 AACCCTCG-ATCTGACTGGGGCTTAGACATGGAATGGACTCCCTATGCCTAAGCCAACCCACTAA
130 AACCCTCGTTTC-GACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
* * * ** * **
16666350 ACGGGTGTGCGGGCACCCAGTCGACATGAGAGGTAGAATGCGTAAGCCGGGGATCGGCCCAGTAC
194 ACGGGCGTGCGGGCACTCAGCCGACCGGAGAGGCAGAATGCGTAAGCTAGGGATCGGCCCAGTAC
* * * * * *
16666415 CCCTTGCATGCTGCCGATCTTACTGTCGCAACCCTCGGTCTGGTCCTATCTTAGACTGGGAATGA
259 CCCCTGCATGCTGTCGATCCTACTGTCGCAACCCTCGATCTGATCCGATCTTAGACTGGGAATGA
* *
16666480 ACTCTATATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
324 ACTCCATATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCA-TAAACGAGCGTGCG
* * *
16666545 GGCACTCCGTCGGCCGGAGAGGTCGACTGGAGTGGCAGAATGCGCAAGCCGAAGATCGGCCTGAT
388 GGCACTCCG-CCGCCGGAGAGGTCGACTGGAGAGGCAGAATGCGCAAGCCGAAGATCAGCC-GAT
* * *
16666610 CCCCCTTGCGTGCTGCCGATCCTACTGCCGTAACCCTCGGTCC-AGTCTGATCTTAGACTGGGAA
451 CCCCCTTGCGTGCTGCCGATCCTACTGCCGCAACCCTCGATCCGA-TCCGATCTTAGACTGGGAA
* * *
16666674 TGAACTCCGTATGCTTAGACAGGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACAAGCGT
515 TGAACTCTGTATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGT
* * * * *
16666739 GCGGGCACTCAGCCGACCGGAGAGGTAGAATTCA-CAGGTCGAGGACTGGCCCGGTCCCCCCTGC
580 GCGGGCACTCAGCCGACCGGAGAGGCAGAA-TGAGCAAGTCGAGGAC-AGCCCGATCCCCCCTGC
16666803 GTGCCGTCGATCCTACTGCTTAGACTGG
643 GTGCCGTCGATCCTACTGCTTAGACTGG
* * * ** * *
16666831 GAATGAACTCTGCATGCCTAAGTCAACCCACGAAATGAGCGTTCAAGCGTTGAGCCGATCGGAGA
1 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCGCTGAGCCGACCGGAGA
* * * * *
16666896 GGCATAATACGCAAGCCGAGGATCGACCTGGTCCCCCTCTACGTGTTGCCGAT-CTCGCTGCCAC
66 GGCATAATACGCAAGTCGAGGATCGACCCGATCCCCCTCTACGTGCTACCGATAC-CGCTGCCAC
* *
16666960 AACCCTCGTTTCGGCTGGGGCTTAGACATGGAATGAACTCCCTATTCCTAAG-CACACCCACGAA
130 AACCCTCGTTTCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCA-ACCCACGAA
* * *** *
16667024 ACGGGCGTGCGGGCACTCAGCCGGCCGGAGAGGTAGAATGCGTAAGCTAGGGATCGGCATGGTCC
194 ACGGGCGTGCGGGCACTCAGCCGACCGGAGAGGCAGAATGCGTAAGCTAGGGATCGGCCCAGTAC
* * * * * *
16667089 CCCCTACGTGCTGTCAATCCTGCTGTTGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGA
259 CCCCTGCATGCTGTCGATCCTACTGTCGCAACCCTCGATCTGATCCGATCTTAGACTGGGAATGA
* * * * * *
16667154 ACTCCGTATCCTTAGACT-GGAGATGAACTTCGTATGCCTAGGTCAACCCATAAACAAGCGTGCT
324 ACTCCATATGCTTAGACTAGG-GATGAACTCCGTATGCCTAAGTCAACCCATAAACGAGCGTGCG
* ** * * * * * * * * ** *
16667218 GGCATTCAACCGATCGAAAAGGTCG-GTCGAAAAGGTAGAATGCACAAGCCGGGGATCAGCTCGG
388 GGCACTCCGCCG-CCGGAGAGGTCGACT-GGAGAGGCAGAATGCGCAAGCCGAAGATCAGC-CGA
* * * * * *
16667282 TCCCTCCCTGTGTGTTGTCGATCCTACTACCGCAACCCTCGATCCGATCCGATCTTACACTGGGA
450 TCCC-CCTTGCGTGCTGCCGATCCTACTGCCGCAACCCTCGATCCGATCCGATCTTAGACTGGGA
* * *
16667347 ATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGTCTAAGCCAACCCACGAAACGAGCG
514 ATGAACTCTGTATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCG
** * ** * * *
16667412 TGCAAGCGCTCAGCCGGTCAGAGAGGCAGAATGAGCAAGTCGGGGATCAACCCGATCCCCCCTGC
579 TGCGGGCACTCAGCCGACCGGAGAGGCAGAATGAGCAAGTCGAGGA-CAGCCCGATCCCCCCTGC
*
16667477 GTGCTATCGATCTTGCTACCGCAACCCTCGGTCCAGTCTGATCTTAGACTGG
643 GTG----C---C--G-T--CG--A---TC---CTA--CTG--CTTAGACTGG
* * * * * * ** *
16667529 GAATGAACTCCATATGCCTAGGTGAACCCATGAAACGAGCGTGCGGGCGTTGAATCGGCCGGAGA
1 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCGCTGAGCCGACCGGAGA
** * * * * * *
16667594 GGCATAATGTGCAAGTCGAGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGCTACCGCTGCCACT
66 GGCATAATACGCAAGTCGAGGATCGACCCGATCCCCCTCTACGTGCTACCGATACCGCTGCCACA
* * * *
16667659 ACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTGCCTATGCCTAAGCCAACCCATGAAAC
131 ACCCTCGTTTCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC
* * * * * *
16667724 GGCCGTGCGGGCGCTCAGTCGATCGGAGAGGCAAAATGCGTAAGC-AGAGGATTGGCCCAGTACC
196 GGGCGTGCGGGCACTCAGCCGACCGGAGAGGCAGAATGCGTAAGCTAG-GGATCGGCCCAGTACC
* * * *
16667788 CCCTGCATGCTGTCGATCTTGCTGCCGTAACCCTCGAT-TCGATCCGATCTTAGACTGGGAATGA
260 CCCTGCATGCTGTCGATCCTACTGTCGCAACCCTCGATCT-GATCCGATCTTAGACTGGGAATGA
16667852 ACTCCATATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCGTGCG
324 ACTCCATATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCAT-AAACGAGCGTGCG
* * *
16667917 GGCACTCCGCCGGCTGGAGAGGTCGACTGGAGAGGCAGAATGTGCAAGCCGAAGATCAACCCGAT
388 GGCACTCCGCC-GCCGGAGAGGTCGACTGGAGAGGCAGAATGCGCAAGCCGAAGATC-AGCCGAT
* * * * * * *
16667982 CCCCCTTGCGTGCTACCAATCCTACTGTCGCAACCTTCGATCTGGTTCGATCTTAGACTGGGAAT
451 CCCCCTTGCGTGCTGCCGATCCTACTGCCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAAT
*
16668047 GAACTCTGTATGCGTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTG
516 GAACTCTGTATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTG
* * * * * *
16668112 CGGGCACTTAGCCGACCGGAGAGGCAGAATGCGTAAGTCGAGGACCAGCTCGAT-CCTCCTGCAT
581 CGGGCACTCAGCCGACCGGAGAGGCAGAATGAGCAAGTCGAGGA-CAGCCCGATCCCCCCTGCGT
* *
16668176 GCTGTCGATCCTGCTGCTTAGACTGGG
645 GCCGTCGATCCTACTGCTTAGACT-GG
* * *
16668203 GAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGAGCTGAGCC-AGTCGGAG
1 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCGCTGAGCCGA-CCGGAG
* * * *
16668267 AGGCATAATACGCAAGTCGAGGATC-AGCCC-ATCCCCCTCTGCGTGCTACCGGTCCCGCTACCA
65 AGGCATAATACGCAAGTCGAGGATCGA-CCCGATCCCCCTCTACGTGCTACCGATACCGCTGCCA
16668330 CAACCCTCAGTTTC-AGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
129 CAACCCTC-GTTTCGA-CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
* * ** * * ** * *
16668394 AAACGGGCTTGCAGGCACTCAGCCGGTCGAAGAGACAGAATGCACAAG-TCGGGGATCGACCC-G
192 AAACGGGCGTGCGGGCACTCAGCCGACCGGAGAGGCAGAATGCGTAAGCT-AGGGATCGGCCCAG
* * * * *
16668457 ATCCCCCCTGCATGCTATCGATCCTAATGTGGCAACCCTCGATCTGATCCGATCTTAGACTGAGA
256 -TACCCCCTGCATGCTGTCGATCCTACTGTCGCAACCCTCGATCTGATCCGATCTTAGACTGGGA
16668522 ATGAACT
320 ATGAACT
16668529 TCATTTTCTA
Statistics
Matches: 1388, Mismatches: 255, Indels: 109
0.79 0.15 0.06
Matches are distributed among these distances:
672 3 0.00
673 199 0.14
674 608 0.44
675 10 0.01
677 1 0.00
678 1 0.00
680 2 0.00
681 1 0.00
683 2 0.00
684 1 0.00
685 2 0.00
686 2 0.00
687 1 0.00
688 2 0.00
691 2 0.00
693 1 0.00
694 2 0.00
696 3 0.00
697 12 0.01
698 469 0.34
699 60 0.04
700 4 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (670 bp):
GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCGCTGAGCCGACCGGAGA
GGCATAATACGCAAGTCGAGGATCGACCCGATCCCCCTCTACGTGCTACCGATACCGCTGCCACA
ACCCTCGTTTCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC
GGGCGTGCGGGCACTCAGCCGACCGGAGAGGCAGAATGCGTAAGCTAGGGATCGGCCCAGTACCC
CCTGCATGCTGTCGATCCTACTGTCGCAACCCTCGATCTGATCCGATCTTAGACTGGGAATGAAC
TCCATATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCATAAACGAGCGTGCGGGC
ACTCCGCCGCCGGAGAGGTCGACTGGAGAGGCAGAATGCGCAAGCCGAAGATCAGCCGATCCCCC
TTGCGTGCTGCCGATCCTACTGCCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACT
CTGTATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGC
ACTCAGCCGACCGGAGAGGCAGAATGAGCAAGTCGAGGACAGCCCGATCCCCCCTGCGTGCCGTC
GATCCTACTGCTTAGACTGG
Found at i:16667617 original size:158 final size:157
Alignment explanation
Indices: 16667361--16667862 Score: 487
Period size: 158 Copynumber: 3.2 Consensus size: 157
16667351 ACTCTGTATG
* * * ** *
16667361 CTTAGACATGGAATGAACTCCGTATGTCTAAGCCAACCCACGAAACGAGCGTGCAAGCGCTCAGC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGT
* * * ** *
16667426 CGGTCAGAGAGGCAGAATGAGCAAGTCGGGGATCAACCCGATCCCCCCTGCGTGCTATCGATCTT
66 CGGTCGGAGAGGCAAAATGAGCAAGTCGAGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCTT
*
16667491 GCTACCGCAACCCTCGGTCCAGTCTGAT
131 GCTGCCGCAACCCTCGGTCC-GTCTGAT
* ** * * *
16667519 CTTAGAC-TGGGAATGAACTCCATATGCCTAGGTGAACCCATGAAACGAGCGTGCGGGCGTTGAA
1 CTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
16667583 TCGGCCGGAGAGGCATAATGTGCAAGTCGAGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGCTA
65 TCGGTCGGAGAGGCAAAATGAGCAAGTCGAGGATCGGCCCGATCCCCC-CTGCGTGCTGTCGAT-
* * * * **
16667648 C-CGCTGCCACTACCCTCGGTCCGACTGGGG
128 CTTGCTGCCGCAACCCTCGGTCCGTCT-GAT
16667678 CTTAGACATGGAATGAACTGCC-TATGCCTAAGCCAACCCATGAAACG-GCCGTGCGGGCGCTCA
1 CTTAGACATGGAATGAACT-CCATATGCCTAAGCCAACCCATGAAACGAG-CGTGCGGGCGCTCA
* * * * * *
16667741 GTCGATCGGAGAGGCAAAATGCGTAAG-CAGAGGATTGGCCC-AGTACCCCCTGCATGCTGTCGA
64 GTCGGTCGGAGAGGCAAAATGAGCAAGTC-GAGGATCGGCCCGA-TCCCCCCTGCGTGCTGTCGA
* * * *
16667804 TCTTGCTGCCGTAACCCTCGATTCGATCCGAT
127 TCTTGCTGCCGCAACCCTCGGTCCG-TCTGAT
16667836 CTTAGAC-TGGGAATGAACTCCATATGC
1 CTTAGACAT-GGAATGAACTCCATATGC
16667863 TTAGACTAGG
Statistics
Matches: 274, Mismatches: 57, Indels: 26
0.77 0.16 0.07
Matches are distributed among these distances:
157 5 0.02
158 146 0.53
159 119 0.43
160 4 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGT
CGGTCGGAGAGGCAAAATGAGCAAGTCGAGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCTT
GCTGCCGCAACCCTCGGTCCGTCTGAT
Found at i:16667751 original size:159 final size:158
Alignment explanation
Indices: 16667360--16667761 Score: 427
Period size: 159 Copynumber: 2.5 Consensus size: 158
16667350 AACTCTGTAT
* * * **
16667360 GCTTAGACATGGAATGAACTCCGTATGTCTAAGCCAACCCACGAAACGAGCGTGCAAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * *
16667425 CCGGTCAGAGAGGCAGAATGAGCAAGTCGGGGATCAACCCGATCCCCCCTGCGTGCTATCGATCT
66 TCGGTCGGAGAGGCAAAATGAGCAAGTCGAGGATCAACCCGATCCCCCCTGCGTGCTACCGATCT
* * *
16667490 TGCTACCGCAACCCTCGGTCCAGTCTGA
131 CGCTACCACAACCCTCGGTCCAGACTGA
* * ** * *
16667518 TCTTAGAC-TGGGAATGAACTCCATATGCCTAGGTGAACCCATGAAACGAGCGTGCGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * ** * * *
16667582 ATCGGCCGGAGAGGCATAATGTGCAAGTCGAGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGCT
65 GTCGGTCGGAGAGGCAAAATGAGCAAGTCGAGGATCAACCCGATCCCCC-CTGCGTGCTACCGAT
* * *
16667647 AC-CGCTGCCACTACCCTCGGTCC-GACTGGG
129 -CTCGCTACCACAACCCTCGGTCCAGACT-GA
16667677 GCTTAGACATGGAATGAACTGCC-TATGCCTAAGCCAACCCATGAAACG-GCCGTGCGGGCGCTC
1 GCTTAGACATGGAATGAACT-CCATATGCCTAAGCCAACCCATGAAACGAG-CGTGCGGGCGCTC
*
16667740 AGTCGATCGGAGAGGCAAAATG
64 AGTCGGTCGGAGAGGCAAAATG
16667762 CGTAAGCAGA
Statistics
Matches: 197, Mismatches: 40, Indels: 13
0.79 0.16 0.05
Matches are distributed among these distances:
157 1 0.01
158 94 0.48
159 98 0.50
160 4 0.02
ACGTcount: A:0.24, C:0.30, G:0.29, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
TCGGTCGGAGAGGCAAAATGAGCAAGTCGAGGATCAACCCGATCCCCCCTGCGTGCTACCGATCT
CGCTACCACAACCCTCGGTCCAGACTGA
Found at i:16667877 original size:26 final size:26
Alignment explanation
Indices: 16667836--16667888 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16667826 TCGATCCGAT
16667836 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16667862 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCATATG
16667888 C
1 C
16667889 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16668948 original size:26 final size:26
Alignment explanation
Indices: 16668912--16668973 Score: 106
Period size: 26 Copynumber: 2.4 Consensus size: 26
16668902 AGATTAGGCT
*
16668912 CTCCGTATGCTTAGACATGGAACGAA
1 CTCCATATGCTTAGACATGGAACGAA
*
16668938 CTCCATATGCTTAGACATGGAATGAA
1 CTCCATATGCTTAGACATGGAACGAA
16668964 CTCCATATGC
1 CTCCATATGC
16668974 CTAAGCCAAC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (26 bp):
CTCCATATGCTTAGACATGGAACGAA
Found at i:16669305 original size:159 final size:159
Alignment explanation
Indices: 16668946--16669392 Score: 433
Period size: 159 Copynumber: 2.8 Consensus size: 159
16668936 AACTCCATAT
* * *
16668946 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCATGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* ** * * * * *
16669011 CTGGCCG-GAGAGGCAGAATGCGCGTGTCAGGGATCGACCTGATCCCTCT-TGCGTGCTGTCGAT
66 CCGG-CGAGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGAT
* * *
16669074 CCAGCTATAACAACTCTCGATCTAGTCCAA
130 CCAGCTACAACAACCCTCGATCCAGTCCAA
* * * * * * * * *
16669104 TCTTAGAC-TGGGAATGAACTTCGTCTGCATAAGTCAACCCCATGAAACGAGTGTGCGGGCGTTG
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAA-CCCATGAAACGAGCGTGCGGGCGCTC
* *
16669168 AGCCGGTTGAG-GAGGCATAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTC-
64 AGCCGG-CGAGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCG
* * * * ***
16669231 AGTCCCGCTGCCACAACCCTCGGTCCAG-CTGGG
128 A-TCCAGCTACAACAACCCTCGATCCAGTC-CAA
* *
16669264 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * *
16669329 TCGGCCAGAGAGGCAGAATGCACAAG-CTGGGGATCGGCCCGGTCCCCC-CTGCGTGCTGCCGAT
66 CCGGCGAGAGAGGCAGAATGCGCAAGTC-GGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGAT
16669392 C
130 C
16669393 TTGTTGATGC
Statistics
Matches: 230, Mismatches: 49, Indels: 20
0.77 0.16 0.07
Matches are distributed among these distances:
157 1 0.00
158 45 0.20
159 123 0.53
160 60 0.26
161 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CCGGCGAGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATC
CAGCTACAACAACCCTCGATCCAGTCCAA
Found at i:16669464 original size:26 final size:26
Alignment explanation
Indices: 16669423--16669475 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16669413 CTGATCCAAT
*
16669423 CTTAGACTGGTAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16669449 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16669475 C
1 C
16669476 CTAAGTCAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16669818 original size:26 final size:26
Alignment explanation
Indices: 16669789--16669841 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16669779 CTGGTCCGAC
*
16669789 CTTAGAC-TAGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACCCCGTATG
16669815 CTTAGACATGGAATGAACCCCGTATG
1 CTTAGACATGGAATGAACCCCGTATG
16669841 C
1 C
16669842 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACATGGAATGAACCCCGTATG
Found at i:16670275 original size:159 final size:157
Alignment explanation
Indices: 16669814--16670281 Score: 431
Period size: 159 Copynumber: 2.9 Consensus size: 157
16669804 AACTCCGTAT
* **
16669814 GCTTAGACATGGAATGAAC-CCCGTATGCCTAAGCCAACTCATGAAACGAGCGTACAGGCGCTCA
1 GCTTAGACATGGAATGAACTCCC-TATGCCTAAGCCAACCCATGAAACGAGCGTATGGGCGCTCA
* * * * * *
16669878 GCCAGCCAGAGAGGCAGAATGCGTAAGCCGGGGATCAGTCTGGTCCCCCGTACGTGCTATCGATC
65 GCC-GACAGAAAGGCAGAATGCGTAAGCCGGGGATCAGCCTGGTCCCCCCTACATGCTGTCGATC
* ** * *
16669943 TTGCTATTGCAACCCTCGATCTGGTTCGA
129 TTGCTGTCACAACCCTCGGTCTGGTTAGA
* ** * ** * * *
16669972 TCTTAGAC-TGGGAATGAACTCTGTCTGCCTAAGTTAACCCATGAAACGAGCGTGTGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTATGGGCGCTCA
* * * ** * * * * *
16670036 ACCGACCGAAGAGGCATAATATGTAAGCTGGGGATCAGCCTGGTCCCCCTCTGCATGTTGCCGGT
65 GCCGACAGAA-AGGCAGAATGCGTAAGCCGGGGATCAGCCTGGTCCCCC-CTACATGCTGTCGAT
* * * *
16670101 GC-CGCTGCCATAACCCTCGGTCTGGTTAGG
128 -CTTGCTGTCACAACCCTCGGTCTGGTTAGA
* * *
16670131 GCTTAGACATGGAATTAACTCCCTATGCCTAAGCCAACCCACGAAA-TAGGCGTATGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGA-GCGTATGGGCGCTCA
* * *
16670195 GCCGATCGGAAAGGCAGAATGCGTAAGCCGGGGATCAGCCCGGTCCCCCCTATATGCTGTCGATC
65 GCCGA-CAGAAAGGCAGAATGCGTAAGCCGGGGATCAGCCTGGTCCCCCCTACATGCTGTCGATC
*
16670260 TTTGCTGTCACAACCCTTGGTC
129 -TTGCTGTCACAACCCTCGGTC
16670282 CAATCTGATC
Statistics
Matches: 235, Mismatches: 65, Indels: 19
0.74 0.20 0.06
Matches are distributed among these distances:
157 6 0.03
158 94 0.40
159 129 0.55
160 6 0.03
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.22
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTATGGGCGCTCAG
CCGACAGAAAGGCAGAATGCGTAAGCCGGGGATCAGCCTGGTCCCCCCTACATGCTGTCGATCTT
GCTGTCACAACCCTCGGTCTGGTTAGA
Found at i:16670327 original size:26 final size:26
Alignment explanation
Indices: 16670291--16670343 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16670281 CCAATCTGAT
*
16670291 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16670317 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16670343 C
1 C
16670344 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16676956 original size:26 final size:26
Alignment explanation
Indices: 16676918--16676970 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16676908 GGCTCAAACT
16676918 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16676944 CTTAGACAT-GGAATTAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16676970 C
1 C
16676971 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16677290 original size:26 final size:26
Alignment explanation
Indices: 16677261--16677311 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16677251 CCGGTCCAAT
16677261 CTTAGACCGGGAATGAACTCCGTATG
1 CTTAGACCGGGAATGAACTCCGTATG
* *
16677287 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACCGGGAATGAACTCCGTAT
16677312 TCCTAAGTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (26 bp):
CTTAGACCGGGAATGAACTCCGTATG
Found at i:16678520 original size:26 final size:26
Alignment explanation
Indices: 16678484--16678536 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16678474 CCCATCTAAT
*
16678484 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16678510 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16678536 C
1 C
16678537 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16678804 original size:159 final size:160
Alignment explanation
Indices: 16678509--16678974 Score: 426
Period size: 159 Copynumber: 2.9 Consensus size: 160
16678499 AACTCTGTAT
* * * *
16678509 GCTTAGACTGGGGAT-GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGTTGA
1 GCTTAGACTGGGAATAGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTCA
* * **
16678573 GTCGGTCGAAGAGGCAAAATGTGCAAGCCAAGGATCAGCCCGATCCCCCTCTGCGTGCTGTCGAT
66 GCCAGTCGAAGAGGCAAAATGCACAAGCCAAGGATCAGCCCGATCCCCCTCTGCGTGCTGTCGAT
* *
16678638 CCCGCTGCCACAACCCTTGGTTCGG-CTGGG
131 CCCGCTGCCACAACCCTCGGTTCGGTC-CGG
* * * *
16678668 GCTTAGACAT-GGAA-AGAACACCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTC
1 GCTTAGAC-TGGGAATAGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTC
* * * * *
16678731 AGCCAGTCGGAGAGGTAGAATGCACAAGCCAGGGAT-TGACCCTG-TCCCCCTCTGCGTGCTGTC
65 AGCCAGTCGAAGAGGCAAAATGCACAAGCCAAGGATCAG-CCC-GATCCCCCTCTGCGTGCTGTC
* * **
16678794 GATGCTGCTGCCGTAACCCTCGGTTCGGTCCGG
128 GATCCCGCTGCCACAACCCTCGGTTCGGTCCGG
* ** ** * * *
16678827 TCTTAGACTGGGAATA-AACTCCGTATGGATAAGTCAACCCACGAAATGAGCGTATAGGTGTTGA
1 GCTTAGACTGGGAATAGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTCA
* * * *** * * * * * *
16678891 G-CTGATCGAAGTGGCATAATGTGTAAGTCGAGGATCGGCCCGGTCCCCCTCTGTGTGCTGTCGG
66 GCCAG-TCGAAGAGGCAAAATGCACAAGCCAAGGATCAGCCCGATCCCCCTCTGCGTGCTGTCGA
* *
16678955 TGCCGCTACCACAACCCTCG
130 TCCCGCTGCCACAACCCTCG
16678975 ATCTAGCTAG
Statistics
Matches: 244, Mismatches: 53, Indels: 20
0.77 0.17 0.06
Matches are distributed among these distances:
158 5 0.02
159 234 0.96
160 5 0.02
ACGTcount: A:0.23, C:0.28, G:0.29, T:0.20
Consensus pattern (160 bp):
GCTTAGACTGGGAATAGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTCA
GCCAGTCGAAGAGGCAAAATGCACAAGCCAAGGATCAGCCCGATCCCCCTCTGCGTGCTGTCGAT
CCCGCTGCCACAACCCTCGGTTCGGTCCGG
Found at i:16680039 original size:26 final size:26
Alignment explanation
Indices: 16680003--16680055 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16679993 CTGGTTCAAT
* *
16680003 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16680029 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
16680055 C
1 C
16680056 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16680240 original size:528 final size:527
Alignment explanation
Indices: 16679641--16680608 Score: 1354
Period size: 528 Copynumber: 1.8 Consensus size: 527
16679631 GATCCTCGAC
* * * * *
16679641 TGCATGCTATCGATCCTACTGTCGTAACCCTCGGTTCGATCTGATCTTAGACTGGGAATGAACTT
1 TGCATGCTATCGATCCTACTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTC
* * ** *
16679706 CGTATGCTTAAGTCAGCCCACGAAACGAGCGTACGGGC-TCTGAGCCGGCCGAAGAGGCATAATG
66 CGTATGCATAAGTCAACCCACGAAACGAGCGTACGAACGT-TGAGCCGACCGAAGAGGCATAATG
* * * * * *
16679770 CACAAG-CTGGGGATCGGCCCGGTCCCCTTCTACGTGTTACTGGTCCCGCTGCCATAACCATCGG
130 CACAAGTC-GGGGATCGGCCCGGTCCCCCTATACATGCTACTGGTCCCGCTACCAAAACCATCGG
***
16679834 TCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTAC
194 TCCAACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTAC
* * * *
16679899 GGGTGCTCAACTGACC-GAAGAGGCAGAATGCACAAGCC-GAGGATCGGCTAGGT-CTGCCCTGC
259 GGGCGCTCAACTGACCAGAA-AGACAGAATGCACAAGCCAG-GGATCGGCCAGGTCCT--CCTAC
* * * *
16679961 GTGTTGTCGATCTTGCTACCGCAACCCTC-AGTCTGGTTCAATCTTAGATTGGGAATGAACTCCG
320 GTGCTGTCAATCTTGCTACCGCAACCCTCGA-TCCGGTTCAATCTTAGACTGGGAATGAACTCCG
*
16680025 TATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTGCGAGCGCT
384 TATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCT
16680090 CAGCAAGCTGAAAAGGCAGAATGTGCAAGCCGGCCGGAGAGGCAGAATGCACAAGCCAGGGATCA
449 CAGCAAGCTGAAAAGGCAGAATGTGCAAGCCGGCCGGAGAGGCAGAATGCACAAGCCAGGGATCA
16680155 GCTCGGTCCCCCCT
514 GCTCGGTCCCCCCT
* *
16680169 TGCATGCTGTCGATCCTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTC
1 TGCATGCTATCGATCCTACTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTC
* * *
16680234 CGTATGCATAAGTCAACCCATGAAACGAGCGTGCGAACGTTGAGCCTACCGAAGAGGCATAATGC
66 CGTATGCATAAGTCAACCCACGAAACGAGCGTACGAACGTTGAGCCGACCGAAGAGGCATAATGC
* * * * ** *
16680299 ACAAGTCGTGGATCGGCCTGGTCCCCCTATGCATGCTGCTGGTGTCGCTACCAAAACCCTCGGTC
131 ACAAGTCGGGGATCGGCCCGGTCCCCCTATACATGCTACTGGTCCCGCTACCAAAACCATCGGTC
*
16680364 CAACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGG
196 CAACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTACGG
* * * ** * * *
16680429 GCGTTCAGCTGGCCAGAAAGACAGAATGCGTAAGCCAGGGATTGGCCCGGTCCTCTTACGTGCTG
261 GCGCTCAACTGACCAGAAAGACAGAATGCACAAGCCAGGGATCGGCCAGGTCCTCCTACGTGCTG
* * *
16680494 TCAATCTTGCTGCCGCTACCCTCGATCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTT
326 TCAATCTTGCTACCGCAACCCTCGATCCGGTTCAATCTTAGACTGGGAATGAACTCCGTATGCTT
*
16680559 AGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
391 AGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTG
16680609 TAGGCGCTCA
Statistics
Matches: 381, Mismatches: 53, Indels: 13
0.85 0.12 0.03
Matches are distributed among these distances:
527 113 0.30
528 260 0.68
529 8 0.02
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (527 bp):
TGCATGCTATCGATCCTACTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTC
CGTATGCATAAGTCAACCCACGAAACGAGCGTACGAACGTTGAGCCGACCGAAGAGGCATAATGC
ACAAGTCGGGGATCGGCCCGGTCCCCCTATACATGCTACTGGTCCCGCTACCAAAACCATCGGTC
CAACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTACGG
GCGCTCAACTGACCAGAAAGACAGAATGCACAAGCCAGGGATCGGCCAGGTCCTCCTACGTGCTG
TCAATCTTGCTACCGCAACCCTCGATCCGGTTCAATCTTAGACTGGGAATGAACTCCGTATGCTT
AGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGCAAG
CTGAAAAGGCAGAATGTGCAAGCCGGCCGGAGAGGCAGAATGCACAAGCCAGGGATCAGCTCGGT
CCCCCCT
Found at i:16680559 original size:26 final size:26
Alignment explanation
Indices: 16680530--16680582 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16680520 CCGGTTCGAT
16680530 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16680556 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16680582 C
1 C
16680583 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16681469 original size:159 final size:158
Alignment explanation
Indices: 16681221--16681509 Score: 377
Period size: 159 Copynumber: 1.8 Consensus size: 158
16681211 AACTCTACAT
* * * * *
16681221 GCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGGGCGCGGGCACTGAG
1 GCTTAGACTAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGCGCGGGCACTCAG
* * *
16681286 TCGACCGAAGAGGCATAATGCGCAAGCCAGG-GACCGACCCGATCCCCCTCTACGTGCTACCGAT
66 TAGACCGAAGAGGCAGAATACGCAAGCC-GGAGACCGACCCGATCCCCC-CTACGTGCTACCGAT
16681350 CCCACTGTCAGAACCCTCGATCCGGTTATG
129 CCCACTGTCAGAACCCTCGATCCGGTTATG
* * *
16681380 GCTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
1 GCTTAGACTA-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGCGCGGGCACTCA
* * * * *
16681444 GCTAG-CCGGAGAGGCAGAATACGCAAGCCGGAGACTGACCCGGTCCCCCCTGCGTGCTATCGAT
65 G-TAGACCGAAGAGGCAGAATACGCAAGCCGGAGACCGACCCGATCCCCCCTACGTGCTACCGAT
16681508 CC
129 CC
16681510 TGGTGCCGTA
Statistics
Matches: 111, Mismatches: 16, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
158 18 0.16
159 91 0.82
160 2 0.02
ACGTcount: A:0.25, C:0.32, G:0.27, T:0.16
Consensus pattern (158 bp):
GCTTAGACTAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGCGCGGGCACTCAG
TAGACCGAAGAGGCAGAATACGCAAGCCGGAGACCGACCCGATCCCCCCTACGTGCTACCGATCC
CACTGTCAGAACCCTCGATCCGGTTATG
Found at i:16681542 original size:343 final size:342
Alignment explanation
Indices: 16680883--16681654 Score: 924
Period size: 343 Copynumber: 2.2 Consensus size: 342
16680873 TCCGATCTTT
* * * *
16680883 GACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGAG-AGCTGAGCCGA
1 GACTGGG-ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCA-CTGAGTCGA
* *** * * * * * * ** *
16680947 CCGAAGAGACATAATATTCAAGCCGGGGATCGACCCGGTCCTCCTTTATGAGCTGTCAGTCCCGC
64 CCGAAGAGGCATAATGCGCAAGCCAGGGACCGACCCGATCCCCCTCTACGAGCTACCAGTCCCAC
* *
16681012 TGCCACAACCCTCGGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCATCCC
129 TGCCACAACCCTCGATCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
* * * * * **
16681077 ATGAAACGGGCGTACAGGCGTTCAACTTGTCGGAGAGGCAGAATGCGCAAGTTGAGGATCTGCCC
194 ATGAAACGAGCGTACAGGCGCTCAACTAGCCGGAGAGGCAGAATACGCAAGCGGAGGATCTGCCC
* * * *
16681142 GATCCCCCCTACGTGCTACCGATCTTACTACTGCAACCCTCGGTCTGATCTGATCTTAGACTGGA
259 GATCCCCCCTACGTGCTACCGATCCTACTACCGCAACCCACGGTCTGATCCGATCTTAGACTGGA
16681207 AATGAACTCTACATGCTTA
324 AATGAACTCTACATGCTTA
* *
16681226 GACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGGGCGCGGGCACTGAGTCGAC
1 GACT-GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAGTCGAC
*
16681291 CGAAGAGGCATAATGCGCAAGCCAGGGACCGACCCGATCCCCCTCTACGTGCTACC-GATCCCAC
65 CGAAGAGGCATAATGCGCAAGCCAGGGACCGACCCGATCCCCCTCTACGAGCTACCAG-TCCCAC
* * * *
16681355 TGTCAGAACCCTCGATCCGGTTATGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
129 TGCCACAACCCTCGATCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
* * *
16681420 ATGAAACGAGCGTGCGGGCGCTCAGCTAGCCGGAGAGGCAGAATACGCAAGCCGGA-GA-CTGAC
194 ATGAAACGAGCGTACAGGCGCTCAACTAGCCGGAGAGGCAGAATACGCAAG-CGGAGGATCTG-C
* * * ** * * * *
16681483 CCGGTCCCCCCTGCGTGCTATCGATCCTGGTGCCGTAACCCACGGTTTGGTCCGATCTTAGACTG
257 CCGATCCCCCCTACGTGCTACCGATCCTACTACCGCAACCCACGGTCTGATCCGATCTTAGACTG
* * **
16681548 GGAATGAACTTTGTATGCTTA
322 GAAATGAACTCTACATGCTTA
* *
16681569 GACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGAC
1 GACT-GGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAGTCGAC
**
16681634 C-AGAGAGGCAGGATGCGCAAG
65 CGA-AGAGGCATAATGCGCAAG
16681655 TCGGGGATCG
Statistics
Matches: 363, Mismatches: 60, Indels: 12
0.83 0.14 0.03
Matches are distributed among these distances:
342 5 0.01
343 352 0.97
344 6 0.02
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (342 bp):
GACTGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAGTCGACC
GAAGAGGCATAATGCGCAAGCCAGGGACCGACCCGATCCCCCTCTACGAGCTACCAGTCCCACTG
CCACAACCCTCGATCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
GAAACGAGCGTACAGGCGCTCAACTAGCCGGAGAGGCAGAATACGCAAGCGGAGGATCTGCCCGA
TCCCCCCTACGTGCTACCGATCCTACTACCGCAACCCACGGTCTGATCCGATCTTAGACTGGAAA
TGAACTCTACATGCTTA
Found at i:16681589 original size:26 final size:26
Alignment explanation
Indices: 16681539--16681591 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16681529 TTGGTCCGAT
**
16681539 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16681565 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16681591 C
1 C
16681592 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16682487 original size:26 final size:26
Alignment explanation
Indices: 16682447--16682497 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16682437 TGGTCCAATC
*
16682447 TTAGACTGGGAATGAACTCCGTATGA
1 TTAGACTGGGAATGAACTCCATATGA
*
16682473 TTAGACTGGGGATGAACTCCATATG
1 TTAGACTGGGAATGAACTCCATATG
16682498 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGA
Found at i:16683209 original size:26 final size:26
Alignment explanation
Indices: 16683180--16683230 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16683170 TGGTCCGATC
*
16683180 TTAGACTGGGAATGAACTCCGTATGA
1 TTAGACTGGGAATGAACTCCATATGA
*
16683206 TTAGACTGGGGATGAACTCCATATG
1 TTAGACTGGGAATGAACTCCATATG
16683231 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGA
Found at i:16683611 original size:733 final size:733
Alignment explanation
Indices: 16682205--16683665 Score: 2818
Period size: 733 Copynumber: 2.0 Consensus size: 733
16682195 GCCCTGGGCA
16682205 AAAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATATGCACCGTGGCTCAAAATCTTAGATG
1 AAAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATATGCACCGTGGCTCAAAATCTTAGATG
*
16682270 GGGAATGAACTCCGTATGCTTAGACATGGAATGAACTACGTATGCCTAAGCCAACCCACGAAATG
66 GGCAATGAACTCCGTATGCTTAGACATGGAATGAACTACGTATGCCTAAGCCAACCCACGAAATG
**
16682335 AGCGTGCAGGCGCTCAGTCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCC
131 AGCGTGCAAACGCTCAGTCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCC
16682400 TTGCGTGCTGCTGATCCTGCTACCGCAACCCTTGATCTGGTCCAATCTTAGACTGGGAATGAACT
196 TTGCGTGCTGCTGATCCTGCTACCGCAACCCTTGATCTGGTCCAATCTTAGACTGGGAATGAACT
16682465 CCGTATGATTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTACGGAC
261 CCGTATGATTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTACGGAC
16682530 GCTCAGCCGACCAGAGAGGCAGGATGCGCAAGCCGAGGATCGAATGGGTGGTAGGTGGATTCAAG
326 GCTCAGCCGACCAGAGAGGCAGGATGCGCAAGCCGAGGATCGAATGGGTGGTAGGTGGATTCAAG
16682595 CACATCTTCATATTTCTGCCATGCCAATGCCATTTTTACGGCTTGTAAATTCATACAATGGTCCC
391 CACATCTTCATATTTCTGCCATGCCAATGCCATTTTTACGGCTTGTAAATTCATACAATGGTCCC
*
16682660 CTAAGCCTTCATGTGAAGTTTCGTGGCAAGATGACCCATTTTCTATTTTTCACGATTTTGAAAAC
456 CTAAGCCTTCATGTGAAGTTTCGTGGCAAGACGACCCATTTTCTATTTTTCACGATTTTGAAAAC
16682725 TTTTTGTTGATAGGGATTTTTTAAATTTTTTTTAGAAAGAGTTTTGACCCCAAATTTGGTAGAGG
521 TTTTTGTTGATAGGGATTTTTTAAATTTTTTTTAGAAAGAGTTTTGACCCCAAATTTGGTAGAGG
16682790 TGATCCTTGTATTTTTTTTGTTATGCAAAAAAAAAAATTTAGCTAAAAACTGGAAGTGGAGAAGA
586 TGATCCTTGTATTTTTTTTGTTATGCAAAAAAAAAAATTTAGCTAAAAACTGGAAGTGGAGAAGA
*
16682855 TTTTGAGATTGGTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
651 TTTTGAGATCGGTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
16682920 ATAAAATCTTAAACCTAT
716 ATAAAATCTTAAACCTAT
16682938 AAAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATATGCACCGTGGCTCAAAATCTTAGATG
1 AAAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATATGCACCGTGGCTCAAAATCTTAGATG
16683003 GGCAATGAACTCCGTATGCTTAGACATGGAATGAACTACGTATGCCTAAGCCAACCCACGAAATG
66 GGCAATGAACTCCGTATGCTTAGACATGGAATGAACTACGTATGCCTAAGCCAACCCACGAAATG
16683068 AGCGTGCAAACGCTCAGTCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCC
131 AGCGTGCAAACGCTCAGTCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCC
*
16683133 TTGCGTGCTGCTGATCCTGCTACCGCAACCCTTGATCTGGTCCGATCTTAGACTGGGAATGAACT
196 TTGCGTGCTGCTGATCCTGCTACCGCAACCCTTGATCTGGTCCAATCTTAGACTGGGAATGAACT
16683198 CCGTATGATTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTACGGAC
261 CCGTATGATTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTACGGAC
16683263 GCTCAGCCGACCAGAGAGGCAGGATGCGCAAGCCGAGGATCGAAT-GGTGGTAGGTGGATTCAAG
326 GCTCAGCCGACCAGAGAGGCAGGATGCGCAAGCCGAGGATCGAATGGGTGGTAGGTGGATTCAAG
*
16683327 CACATCTTCATATTTTTTGCCATGCCAATGCCATTTTTTACGGCTTGTAAATTCATACAATGGTC
391 CACATCTTCATA-TTTCTGCCATGCCAATGCCA-TTTTTACGGCTTGTAAATTCATACAATGGTC
16683392 CCCTAAGCCTTCATGTGAAGTTTCGTGGCAAGACGACCCATTTTCTATTTTTCACGATTTTGAAA
454 CCCTAAGCCTTCATGTGAAGTTTCGTGGCAAGACGACCCATTTTCTATTTTTCACGATTTTGAAA
16683457 ACTTTTTGTTGATAGGGATTTTTTAAATTTTTTTTAGAAAGAGTTTTGACCCCAAATTTGGTAGA
519 ACTTTTTGTTGATAGGGATTTTTTAAATTTTTTTTAGAAAGAGTTTTGACCCCAAATTTGGTAGA
*
16683522 GGTGATCCTTGTATTTTTTTTGTTATGC-ACAAAAAAAATTTAGCTAAAAACTGGAAGTGGAGAA
584 GGTGATCCTTGTATTTTTTTTGTTATGCAAAAAAAAAAATTTAGCTAAAAACTGGAAGTGGAGAA
16683586 GATTTTGAGATCGGTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
649 GATTTTGAGATCGGTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
16683651 CTATAAAATCTTAAA
714 CTATAAAATCTTAAA
16683666 TGCTCTTTAA
Statistics
Matches: 718, Mismatches: 8, Indels: 4
0.98 0.01 0.01
Matches are distributed among these distances:
732 31 0.04
733 499 0.69
734 188 0.26
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (733 bp):
AAAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATATGCACCGTGGCTCAAAATCTTAGATG
GGCAATGAACTCCGTATGCTTAGACATGGAATGAACTACGTATGCCTAAGCCAACCCACGAAATG
AGCGTGCAAACGCTCAGTCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCC
TTGCGTGCTGCTGATCCTGCTACCGCAACCCTTGATCTGGTCCAATCTTAGACTGGGAATGAACT
CCGTATGATTAGACTGGGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTACGGAC
GCTCAGCCGACCAGAGAGGCAGGATGCGCAAGCCGAGGATCGAATGGGTGGTAGGTGGATTCAAG
CACATCTTCATATTTCTGCCATGCCAATGCCATTTTTACGGCTTGTAAATTCATACAATGGTCCC
CTAAGCCTTCATGTGAAGTTTCGTGGCAAGACGACCCATTTTCTATTTTTCACGATTTTGAAAAC
TTTTTGTTGATAGGGATTTTTTAAATTTTTTTTAGAAAGAGTTTTGACCCCAAATTTGGTAGAGG
TGATCCTTGTATTTTTTTTGTTATGCAAAAAAAAAAATTTAGCTAAAAACTGGAAGTGGAGAAGA
TTTTGAGATCGGTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
ATAAAATCTTAAACCTAT
Found at i:16683835 original size:14 final size:14
Alignment explanation
Indices: 16683816--16683848 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
16683806 TTAGGCTCTC
16683816 CGATGATGCTCCGA
1 CGATGATGCTCCGA
*
16683830 CGATGATGCTCCGG
1 CGATGATGCTCCGA
16683844 CGATG
1 CGATG
16683849 GTGCCCCAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.18, C:0.27, G:0.33, T:0.21
Consensus pattern (14 bp):
CGATGATGCTCCGA
Found at i:16683956 original size:26 final size:26
Alignment explanation
Indices: 16683919--16683970 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16683909 GCTCAAACTT
16683919 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
16683945 TTAGACAT-GGAATGAACTCCGTATGC
1 TTAGAC-TGGGAATGAACTCCGTATGC
16683971 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Done.