Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19866354
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 74000 characters in sequence are not A, C, G, or T
File 80 of 100
Found at i:16684618 original size:157 final size:159
Alignment explanation
Indices: 16684287--16684621 Score: 356
Period size: 158 Copynumber: 2.1 Consensus size: 159
16684277 ACTCCGTATA
* * * * * * * *
16684287 CTTAGACTGGTG-ATGAACTCCGTCTGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCGCTGAG
1 CTTAGACTGG-GAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAA
* * ** * *
16684351 TCAACTGGAGAGGCATAATGTGTAAGCCGGGGATCAGCCCGATCCCCCTCTGCGTGCTGCCAGTC
65 TCAACCGGAGAGGCAGAATACGCAAGCCGGGGATCAGCCCGATCCCCCTCTACGTGCTGCCAGTC
* *
16684416 CCACTGCCACAACCCTCAGTCTGGCTAGGG
130 CCACTGCCACAACCCTCAGTCTAGCTAGAG
*
16684446 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA-GGGCGTGCGGGCACTCAA
1 CTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAA
* * *
16684509 TCGACCGGAGAGGCAGAATACGCAAGCTGGGGATCGGCCCGATCCCCC-CTACGTGCTGCC-GAT
65 TCAACCGGAGAGGCAGAATACGCAAGCCGGGGATCAGCCCGATCCCCCTCTACGTGCTGCCAG-T
*** * * * * *
16684572 CCTGTTGTCGCAACCCTCAGTCTAGTTCGAT
129 CCCACTGCCACAACCCTCAGTCTAGCTAGAG
16684603 CTTAGACTGGGAATGAACT
1 CTTAGACTGGGAATGAACT
16684622 TCGTATGCTT
Statistics
Matches: 144, Mismatches: 28, Indels: 10
0.79 0.15 0.05
Matches are distributed among these distances:
156 2 0.01
157 50 0.35
158 54 0.38
159 37 0.26
160 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAAT
CAACCGGAGAGGCAGAATACGCAAGCCGGGGATCAGCCCGATCCCCCTCTACGTGCTGCCAGTCC
CACTGCCACAACCCTCAGTCTAGCTAGAG
Found at i:16684629 original size:157 final size:159
Alignment explanation
Indices: 16684287--16684629 Score: 363
Period size: 157 Copynumber: 2.2 Consensus size: 159
16684277 ACTCCGTATA
* * * * * * *
16684287 CTTAGACTGGTG-ATGAACTCCGTCTGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCGCTGAG
1 CTTAGACTGG-GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAA
* * ** * *
16684351 TCAACTGGAGAGGCATAATGTGTAAGCCGGGGATCAGCCCGATCCCCCTCTGCGTGCTGCCAGTC
65 TCAACCGGAGAGGCAGAATACGCAAGCCGGGGATCAGCCCGATCCCCCTCTACGTGCTGCCAGTC
* *
16684416 CCACTGCCACAACCCTCAGTCTGGCTAGGG
130 CCACTGCCACAACCCTCAGTCTAGCTAGAG
* *
16684446 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA-GGGCGTGCGGGCACTCAA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAA
* * *
16684509 TCGACCGGAGAGGCAGAATACGCAAGCTGGGGATCGGCCCGATCCCCC-CTACGTGCTGCC-GAT
65 TCAACCGGAGAGGCAGAATACGCAAGCCGGGGATCAGCCCGATCCCCCTCTACGTGCTGCCAG-T
*** * * * * *
16684572 CCTGTTGTCGCAACCCTCAGTCTAGTTCGAT
129 CCCACTGCCACAACCCTCAGTCTAGCTAGAG
*
16684603 CTTAGACTGGGAATGAACTTCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
16684630 TTAGACTAGG
Statistics
Matches: 150, Mismatches: 30, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
156 2 0.01
157 56 0.37
158 54 0.36
159 37 0.25
160 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAAT
CAACCGGAGAGGCAGAATACGCAAGCCGGGGATCAGCCCGATCCCCCTCTACGTGCTGCCAGTCC
CACTGCCACAACCCTCAGTCTAGCTAGAG
Found at i:16684632 original size:26 final size:26
Alignment explanation
Indices: 16684603--16684655 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16684593 CTAGTTCGAT
*
16684603 CTTAGACT-GGGAATGAACTTCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
16684629 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
16684655 C
1 C
16684656 GTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:16684706 original size:342 final size:343
Alignment explanation
Indices: 16683919--16684726 Score: 977
Period size: 342 Copynumber: 2.4 Consensus size: 343
16683909 GCTCAAACTT
* *
16683919 TTAGACTGGGAATGAACTCCGTATGCTTAGAC-ATGGAATGAACTCCGTATGCCTAAGCCAACCC
1 TTAGACTGGGAATGAACTCCGTATGCTTAGACTA-GGGATGAACTCCGTATGCCTAAGTCAACCC
* * *
16683983 ATGAAACGAGCGTGTGGGCGCTCAGCCAATCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCC
65 ATGAAACGAGCGTGCGGGCGCTCAGCCAACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCC
* * * * * *
16684048 AGTGCCCCTCTACGTGTTGTCGATCCCGCTGCCACAACCCTTGATCTGGCTGGGGCTTAGACACA
130 AGTCCCCCTCTACGTGCTGCCGATCCCACTGCCACAACCCTAGATCTGGCTAGGGCTTAGACACA
* * * **
16684113 GAATGAACTCCCTATTCCTAAGCCAACCCATAAAATAGGAGTGCGGAGGCTCAACCGGTCGGAGA
195 GAATGAACTCCCTATGCCTAAGCCAACCCACAAAATAGGAGTGCGGAGACTCAACCGACCGGAGA
* * * * *
16684178 GGTAGAATACGCAAGCCAAGGATCAGCCCGGTCCCCCTTGCGTACTATCGATCCTGCTGTCGCAA
260 GGCAGAATACGCAAGCCAAGGATCAGCCCGATCCCCCCTACGTACTACCGATCCTGCTGTCGCAA
* *
16684243 CCCTCGATCTGGTTTGATC
325 CCCTCGATCTAGTTCGATC
* * *
16684262 TTAGACTGGCAATGAACTCCGTATACTTAGACT-GGTGATGAACTCCGTCTGCCTAAGTCAACCC
1 TTAGACTGGGAATGAACTCCGTATGCTTAGACTAGG-GATGAACTCCGTATGCCTAAGTCAACCC
* * * * * * *
16684326 ATGAAACGAGTGTGCGGGCGCTGAGTCAACTGGAGAGGCATAATGTGTAAGCCGGGGATC-AGCC
65 ATGAAACGAGCGTGCGGGCGCTCAGCCAACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGA-CC
*
16684390 C-GATCCCCCTCTGCGTGCTGCC-AGTCCCACTGCCACAACCCTCAG-TCTGGCTAGGGCTTAGA
129 CAG-TCCCCCTCTACGTGCTGCCGA-TCCCACTGCCACAACCCT-AGATCTGGCTAGGGCTTAGA
** * * * *
16684452 CATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA-GGGCGTGCGG-GCACTCAATCGACC
191 CACAGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATAGGAGTGCGGAG-ACTCAACCGACC
*** * * * *
16684515 GGAGAGGCAGAATACGCAAGCTGGGGATCGGCCCGATCCCCCCTACGTGCTGCCGATCCTGTTGT
255 GGAGAGGCAGAATACGCAAGCCAAGGATCAGCCCGATCCCCCCTACGTACTACCGATCCTGCTGT
16684580 CGCAACCCTC-AGTCTAGTTCGATC
320 CGCAACCCTCGA-TCTAGTTCGATC
* *
16684604 TTAGACTGGGAATGAACTTCGTATGCTTAGACTAGGGATGAACTCCGTATGCGTAAGTCAACCCA
1 TTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCA
* * * * * * *
16684669 CGAACCAAGCGTGCGGACGCTCAGCCGACCAGAGAGGCAGGATGCGCAAGCCGGGGAT
66 TGAAACGAGCGTGCGGGCGCTCAGCCAACCGGAGAGGCAGAATGCGCAAGCCGGGGAT
16684727 AGAACGGGGC
Statistics
Matches: 390, Mismatches: 66, Indels: 19
0.82 0.14 0.04
Matches are distributed among these distances:
341 2 0.01
342 195 0.50
343 192 0.49
344 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.20
Consensus pattern (343 bp):
TTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCA
TGAAACGAGCGTGCGGGCGCTCAGCCAACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCA
GTCCCCCTCTACGTGCTGCCGATCCCACTGCCACAACCCTAGATCTGGCTAGGGCTTAGACACAG
AATGAACTCCCTATGCCTAAGCCAACCCACAAAATAGGAGTGCGGAGACTCAACCGACCGGAGAG
GCAGAATACGCAAGCCAAGGATCAGCCCGATCCCCCCTACGTACTACCGATCCTGCTGTCGCAAC
CCTCGATCTAGTTCGATC
Found at i:16685708 original size:26 final size:26
Alignment explanation
Indices: 16685668--16685719 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16685658 CGGTCTGATT
16685668 TTAGACTGGGAATGAACT-TCGTATGC
1 TTAGACTGGGAATGAACTCT-GTATGC
16685694 TTAGACTGAGG-ATGAACTCTGTATGC
1 TTAGACTG-GGAATGAACTCTGTATGC
16685720 CTAAGTCAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCTGTATGC
Found at i:16685927 original size:26 final size:26
Alignment explanation
Indices: 16685876--16685928 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16685866 CCGGTCTGAT
*
16685876 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16685902 CTTAGACAT-GGAATGAACTTCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
16685928 C
1 C
16685929 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16686418 original size:26 final size:26
Alignment explanation
Indices: 16686376--16686428 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16686366 CCGATCTGAT
16686376 CTTAGACTGGAACTAAACTCCATATG
1 CTTAGACTGGAACTAAACTCCATATG
* *
16686402 CTTAGACTGAGGA-TAAACTCCGTATG
1 CTTAGACTG-GAACTAAACTCCATATG
16686428 C
1 C
16686429 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAACTAAACTCCATATG
Found at i:16687118 original size:26 final size:26
Alignment explanation
Indices: 16687078--16687130 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16687068 GGCTCAAACT
16687078 CTTAGACTGGTAATGAACTCCGTATG
1 CTTAGACTGGTAATGAACTCCGTATG
16687104 CTTAGACATGG-AATGAACTCCGTATG
1 CTTAGAC-TGGTAATGAACTCCGTATG
16687130 C
1 C
16687131 CTAAGCTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGTAATGAACTCCGTATG
Found at i:16688496 original size:26 final size:26
Alignment explanation
Indices: 16688458--16688510 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16688448 GGCTCAAACT
16688458 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16688484 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
16688510 C
1 C
16688511 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16689194 original size:26 final size:26
Alignment explanation
Indices: 16689156--16689208 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16689146 CTGGTCTGAT
16689156 CTTAGACTAGGAATGAACACCGTATG
1 CTTAGACTAGGAATGAACACCGTATG
* *
16689182 CTTAGAC-ATGGAATGAACTCTGTATG
1 CTTAGACTA-GGAATGAACACCGTATG
16689208 C
1 C
16689209 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACACCGTATG
Found at i:16689704 original size:26 final size:26
Alignment explanation
Indices: 16689666--16689718 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16689656 GGCTCAAATT
16689666 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16689692 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16689718 C
1 C
16689719 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16690432 original size:26 final size:26
Alignment explanation
Indices: 16690394--16690446 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16690384 CCGGTTCGAT
*
16690394 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16690420 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16690446 C
1 C
16690447 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16690766 original size:26 final size:26
Alignment explanation
Indices: 16690737--16690789 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16690727 TTGATCCGAT
*
16690737 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTCGGG-ATGAACTACGTATG
16690763 CTTAGACTCGGGATGAACTACGTATG
1 CTTAGACTCGGGATGAACTACGTATG
16690789 C
1 C
16690790 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTCGGGATGAACTACGTATG
Found at i:16691462 original size:195 final size:194
Alignment explanation
Indices: 16690944--16691465 Score: 521
Period size: 195 Copynumber: 2.7 Consensus size: 194
16690934 GTTCGATCCA
*
16690944 ATCTTAGACTAGGAATGAACTCCGTATGCTTGGAC-ATGGAATGAACTCCATATGCCTAAGCCAA
1 ATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTA-GGAATGAACTCCATATGCCTAAGCCAA
* * * * * ** * *
16691008 CCCATGAAACAGCGTGCAGGCGCTCAGCCGGTCGGAGAGGCAGAACGTGTAAGCCGAAGATTGGC
65 CCCATGAAAGAGCGTACGGGCGCTCAG-CAGTCGGAGAGGCAGAATGTGTAAGCCGGGGATCGAC
* * * *
16691073 TCGGTCTCCCTCTGCGTGCTACCGATCCTGCTATTGGTCCTACTGCTGCAACCCTCGTTTCGGTC
129 -CGGTCTCCCTCTGCGTGCTACCGATACTGCTACTGGTCCTACTGCTGCAACCCTCGATCCGGTC
*
16691138 TG
193 CG
* * * * * * * *
16691140 ATCTTAGATTGGGAATGAGCTCCGTATGCTTTGACTGGGGATGAACTCCATATGGCTAAGTCAAC
1 ATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAAC
* * * * * * ** *
16691205 CCATGAAACGAGCGTCCGGGCGCTTAGCCGACCGGAGAGGTAAAATGTGTAAATCAGGGATCGAC
66 CCATGAAA-GAGCGTACGGGCGCTCAGCAG-TCGGAGAGGCAGAATGTGTAAGCCGGGGATCGAC
* ** * *
16691270 CGG-GTCCCTCCTGCGT-CTGTCGATACTGCTACTGGTCCTGCT-ATCGCAACCCTCGATCCGGT
129 CGGTCTCCCT-CTGCGTGCTACCGATACTGCTACTGGTCCTACTGCT-GCAACCCTCGATCCGGT
16691332 CCG
192 CCG
* * **
16691335 ATCTTGGACTAGGAATGAACTCTGTATGCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAAC
1 ATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAAC
** * * *
16691400 CCACAAAATGAGCGTACGGGTGCTCAGCTAGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGAC
66 CCATGAAA-GAGCGTACGGGCGCTCAGC-AGTCGGAGAGGCAGAATGTGTAAGCCGGGGATCGAC
16691465 C
129 C
16691466 CGATCCCCCC
Statistics
Matches: 259, Mismatches: 61, Indels: 13
0.78 0.18 0.04
Matches are distributed among these distances:
194 1 0.00
195 145 0.56
196 76 0.29
197 37 0.14
ACGTcount: A:0.24, C:0.26, G:0.27, T:0.23
Consensus pattern (194 bp):
ATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAAC
CCATGAAAGAGCGTACGGGCGCTCAGCAGTCGGAGAGGCAGAATGTGTAAGCCGGGGATCGACCG
GTCTCCCTCTGCGTGCTACCGATACTGCTACTGGTCCTACTGCTGCAACCCTCGATCCGGTCCG
Found at i:16692052 original size:292 final size:293
Alignment explanation
Indices: 16691521--16692076 Score: 697
Period size: 292 Copynumber: 1.9 Consensus size: 293
16691511 CCGGTTTGAT
* **
16691521 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATTCGGGTGCTGAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATTCGGGCACTGAAC
* * ** * * * * ** *
16691586 CGACCGAAGAGGCATAGTGCACAAGCCGACGATTGGCCCGATCCCCCTTTTCGTGTTATGGGTCC
66 CGACCGAAAAGGCATAATGCACAAGCCGACGATCAGCCCGATCCCACTCTACCTGCCATCGGTCC
* * * *
16691651 CACTGTCACAACCCTCAATCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
131 CACTGCCACAACACTCAATCCAACTGGGGCTTAGACATGGAATGAACTCCCGATGCCTAAGCCAA
*
16691716 CCCATGAAACGACCGTGTGGGCACTCAGTCGGCCAGAGAGGCAGAATGCGCAAG-CAAGGACCGG
196 CCCATGAAACGACCGTGTGGGCACTCAGTCGGCCAGAGAGGCAGAATGCACAAGTCAAGGACCGG
16691780 CCCGATCCCCTCTGCGTGCTGTCAATCTTGCTG
261 CCCGATCCCCTCTGCGTGCTGTCAATCTTGCTG
* * * *
16691813 CTTAGGCTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTTCGGGCACTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATTCGGGCACTGAAC
* * * * ** **
16691878 TGATCGAAAAGGCATAATGCGCAAGCTGGGGATCAGCTTGATCCCACTCTACCTGCCATCGGTCC
66 CGACCGAAAAGGCATAATGCACAAGCCGACGATCAGCCCGATCCCACTCTACCTGCCATCGGTCC
* *
16691943 CACTGCCACAACACTCAGTCCAACTGGGGCTTAGACATGGAATGAACTCGCGATGCCTAAGCCAA
131 CACTGCCACAACACTCAATCCAACTGGGGCTTAGACATGGAATGAACTCCCGATGCCTAAGCCAA
* * ** * * *
16692008 CCCATGAAA-TA-GGTGTGCGGGCACTCAG-CAGGCTGGATAGGCAGAATGCACAAGTCAGGGAT
196 CCCATGAAACGACCGTGT--GGGCACTCAGTC-GGCCAGAGAGGCAGAATGCACAAGTCAAGGAC
16692070 CGGCCCG
258 CGGCCCG
16692077 GACCCCCCTA
Statistics
Matches: 220, Mismatches: 40, Indels: 7
0.82 0.15 0.03
Matches are distributed among these distances:
290 4 0.02
291 2 0.01
292 202 0.92
293 12 0.05
ACGTcount: A:0.26, C:0.29, G:0.26, T:0.19
Consensus pattern (293 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATTCGGGCACTGAAC
CGACCGAAAAGGCATAATGCACAAGCCGACGATCAGCCCGATCCCACTCTACCTGCCATCGGTCC
CACTGCCACAACACTCAATCCAACTGGGGCTTAGACATGGAATGAACTCCCGATGCCTAAGCCAA
CCCATGAAACGACCGTGTGGGCACTCAGTCGGCCAGAGAGGCAGAATGCACAAGTCAAGGACCGG
CCCGATCCCCTCTGCGTGCTGTCAATCTTGCTG
Found at i:16692218 original size:26 final size:26
Alignment explanation
Indices: 16692142--16692219 Score: 104
Period size: 26 Copynumber: 3.0 Consensus size: 26
16692132 CCGGTCCGAT
* *
16692142 CTTAGAC-TGGAATGAACTCCGTCTA
1 CTTAGACATGGAATGAACTCCGTATG
* *
16692167 CTTAGATATGGAATTAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
*
16692193 CTTAGACATGGGATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
16692219 C
1 C
16692220 CTAAACGAAC
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
25 6 0.13
26 39 0.87
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:16693086 original size:26 final size:26
Alignment explanation
Indices: 16693050--16693102 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16693040 CCGATCCGAT
* *
16693050 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
16693076 CTTATACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
16693102 C
1 C
16693103 ATAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:16693155 original size:184 final size:185
Alignment explanation
Indices: 16692840--16693201 Score: 496
Period size: 184 Copynumber: 2.0 Consensus size: 185
16692830 CTGGTCCTAC
*
16692840 TGCCGTAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGGCATGGAA
1 TGCCGTAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAA
* * * * * *
16692905 TGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTTAACCAGTCGAAGAGGT
66 TAAACTCCGTATGCATAAGCCAACCAATGAAACGAGCGTACGGGTGCTCAACCAGCCGAAGAGGT
16692970 AGAATGCGTAAGCCAGGGACTGGCCCGATCCCCC-CTGCATGCTGTCGATCCTGT
131 AGAATGCGTAAGCCAGGGACTGGCCCGATCCCCCTCTGCATGCTGTCGATCCTGT
* ** * *
16693024 TGCCGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTATAC-TGGGG
1 TGCCGTAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACAT-GGA
* ** **
16693088 ATAAACTCCGTATGCATAAGTCAACCAATGAAACGAGCGTACGGGTGCTCAGTC-GACCGGTGAG
65 ATAAACTCCGTATGCATAAGCCAACCAATGAAACGAGCGTACGGGTGCTCAACCAG-CCGAAGAG
* * * *
16693152 GTAGAATGCGTAAGCCAGGGATTGGCTCGGTCCCCCTCTGCGTGCTGTCG
129 GTAGAATGCGTAAGCCAGGGACTGGCCCGATCCCCCTCTGCATGCTGTCG
16693202 GTCTCGCTAC
Statistics
Matches: 154, Mismatches: 21, Indels: 5
0.86 0.12 0.03
Matches are distributed among these distances:
183 2 0.01
184 140 0.91
185 12 0.08
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.22
Consensus pattern (185 bp):
TGCCGTAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAA
TAAACTCCGTATGCATAAGCCAACCAATGAAACGAGCGTACGGGTGCTCAACCAGCCGAAGAGGT
AGAATGCGTAAGCCAGGGACTGGCCCGATCCCCCTCTGCATGCTGTCGATCCTGT
Found at i:16693597 original size:158 final size:158
Alignment explanation
Indices: 16693394--16693736 Score: 402
Period size: 158 Copynumber: 2.2 Consensus size: 158
16693384 CCAGCTGGGG
* * * * * *
16693394 CTTAGACAT-GGAATGAACT-TGCTATGCCTAAGGCAACCCACGAAACGGGCGTGTGGGTGCTCA
1 CTTAGAC-TGGGAATGAACTCCG-TATGCCAAAGGCAACCCACGAAACGAGCATGCGGATGCTCA
** ** * * *
16693457 GTCTGCCAGAGAGGTAGAATGTGCAAGCCAGGGATCGGCCTGGTCCCCCCTGCGTTCTATCGATC
64 ACCACCCAAAGAGGTAGAATGTGCAAGCCAGGGATCGGCCTGGTCCCCCCTGCGTGCTATCGAAC
* ** * * *
16693522 CTGCTGTCTCAACCCTCGGTCCGGTCCGAT
129 ATGCTACCGCAACCCTCAGTCCGGTACGAT
* *
16693552 CTTAGACTGGGAATGAACTCCGTATGCCAAAGTCAACCCATGAAACGAGCATGCGGATGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCAAAGGCAACCCACGAAACGAGCATGCGGATGCTCAAC
* * * * *
16693617 CACCCAAAGAGGTAGGATGTGCAAGCCGGGGATCGGCCTGGTCCCTCTTGCGTGCTGTCGAACAT
66 CACCCAAAGAGGTAGAATGTGCAAGCCAGGGATCGGCCTGGTCCCCCCTGCGTGCTATCGAACAT
*
16693682 GCTACCGCAACCTTCAGTCCGGTACGAT
131 GCTACCGCAACCCTCAGTCCGGTACGAT
*
16693710 CTTACACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
16693737 TGAGACTGGG
Statistics
Matches: 155, Mismatches: 28, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
157 1 0.01
158 153 0.99
159 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCAAAGGCAACCCACGAAACGAGCATGCGGATGCTCAAC
CACCCAAAGAGGTAGAATGTGCAAGCCAGGGATCGGCCTGGTCCCCCCTGCGTGCTATCGAACAT
GCTACCGCAACCCTCAGTCCGGTACGAT
Found at i:16694632 original size:26 final size:26
Alignment explanation
Indices: 16694603--16694653 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16694593 CGGTCCGATC
16694603 TTAGAC-TGGGAATGAACTCCGTATGA
1 TTAGACAT-GGAATGAACTCCGTATGA
16694629 TTAGACATGGAATGAACTCCGTATG
1 TTAGACATGGAATGAACTCCGTATG
16694654 CCTAAGCCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCGTATGA
Found at i:16695133 original size:26 final size:26
Alignment explanation
Indices: 16695104--16695182 Score: 108
Period size: 26 Copynumber: 3.0 Consensus size: 26
16695094 CCGATCCGAT
16695104 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
16695130 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
* *
16695156 CTTAGAC-ATGGAATGAACTCTGTATG
1 CTTAGACTA-GGGATGAACTCCGTATG
16695182 C
1 C
16695183 CTAAGCTAAC
Statistics
Matches: 48, Mismatches: 2, Indels: 6
0.86 0.04 0.11
Matches are distributed among these distances:
25 3 0.06
26 43 0.90
27 2 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:16695317 original size:210 final size:210
Alignment explanation
Indices: 16694945--16695340 Score: 539
Period size: 210 Copynumber: 1.9 Consensus size: 210
16694935 TTCGACTGGG
* *
16694945 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGACGTGCAGGCCCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGACATGCAGGCACTCAA
* * *
16695010 CCGATCGAAAAGGTAGAACGCACAAGCCTGGGATCGGCCCGATCCCCCTTGTCTGCTGTCGATCC
66 CCGATCGAAAAGGTAGAACGCACAAGCCAGGGATCGGCCCGAGCCCCCTTGTCTGCTATCGATCC
* * * *
16695075 TGCTATCGTAACCCTCGGTCCGATCCGATCTTAGACT-AGGGATGAACTCCGTATGCTTAGACTG
131 TACTATCGCAACCCTCGATCCGATCCGATCTTAGACTGA-GAATGAACTCCGTATGCTTAGACTG
16695139 GGAATGAACTCCGTAT
195 GGAATGAACTCCGTAT
** *
16695155 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCTAACCCACGAAAC-GAGCATGCAGGCACTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGA-CATGCAGGCACTCA
** * * * * *
16695219 GTCGATTGAAGAGGTAGAATGCGCAAGCCAGGGATCGGTCCGAGCCCCCTTG-CGTGCTATCGAT
65 ACCGATCGAAAAGGTAGAACGCACAAGCCAGGGATCGGCCCGAGCCCCCTTGTC-TGCTATCGAT
**
16695283 CCTACTATCGCAAGTCTCGATCCGA-CCTGATCTTAGACTGAGAATGAACTCCGTATGC
129 CCTACTATCGCAACCCTCGATCCGATCC-GATCTTAGACTGAGAATGAACTCCGTATGC
16695341 CTAATTCAAC
Statistics
Matches: 161, Mismatches: 21, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
209 5 0.03
210 155 0.96
211 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.24, T:0.21
Consensus pattern (210 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGACATGCAGGCACTCAA
CCGATCGAAAAGGTAGAACGCACAAGCCAGGGATCGGCCCGAGCCCCCTTGTCTGCTATCGATCC
TACTATCGCAACCCTCGATCCGATCCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGG
GAATGAACTCCGTAT
Found at i:16695648 original size:526 final size:527
Alignment explanation
Indices: 16694602--16695682 Score: 1221
Period size: 526 Copynumber: 2.1 Consensus size: 527
16694592 CCGGTCCGAT
*
16694602 CTTAGACTGGGAATGAACTCCGTATGATTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
* ** *
16694667 ACGAAACAAGCATGCGGGCGTTCAACCGACCGAATAGGCAGAATGCGCAAGCCGAGGACTGGCCC
66 ACGAAACAAGCATGCAGGCACTCAACCGACCGAAGAGGCAGAATGCGCAAGCCGAGGACTGGCCC
* * * * * *
16694732 AGTCCCCCCTTACATGTTATCAATCCTGCTACCGTAACCCTCGGTCCGGTCCAATTTTAGACTTG
131 AG-CCCCCCTTACATGCTATCAATCCTACTACCGCAACCCTCGATCCGGACCAATCTTAGACTTG
* * * * * ** *
16694797 GAATGAACTTCGTATGCCTAAGTCAACCCACGAAACAAGCGTTTGGGCACTGAGCTAACCGGAGA
195 GAATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCGTTCGAGCACTGAGCCAACCAAAAA
* ** * * * *
16694862 GGCATAATGCGTAAGCCAGGGATCGGTTCGGTCCCTCTCTGCATGTTGCCGATCCCGCTGCCACA
260 GGCATAATGCGCAAGCCAGGGATCGGCCCAGTCCCCCTCTGCATGCTGCCGATCCCGCTACCACA
* * **
16694927 ACCCTCAGTTCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC
325 ACCCTCAGTCCGACTGGGGCTTAGACAAGGAAACAACTCCCTATGCCTAAGCCAACCCACGAAAC
* * * * * **
16694992 GGACGTGCAGGCCCTCAACCGATCGAAAAGGTAGAACGCACAAGCCTGGGATCGGCCCGATCCCC
390 GGACGTACAGGCACTCAACCGATCGAAAAGGTAGAACACACAAGCCAGGGATCAGCCCGATCCAA
* * *
16695057 CTTGTCTGCTGTCGATCCTGCTATCGTAACCCTCGGTCCGATCCGATCTTAGACTAGGGATGAAC
455 CTTGTCTGCTGTCGATCCTGCTATCGCAACCCTCAGTCCGATCCGATCTTAGACTAGGAATGAAC
16695122 TCCGTATG
520 TCCGTATG
* *
16695130 CTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCTAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
* ** ** *
16695195 ACGAAACGAGCATGCAGGCACTCAGTCGATTGAAGAGGTAGAATGCGCAAGCC-AGGGA-TCGGT
66 ACGAAACAAGCATGCAGGCACTCAACCGACCGAAGAGGCAGAATGCGCAAGCCGA-GGACT-GG-
* * * * * ** *
16695258 CCGAG-CCCCCTTGCGTGCTATCGATCCTACTATCGCAAGTCTCGATCC-GACCTGATCTTAGAC
128 CCCAGCCCCCCTTACATGCTATCAATCCTACTACCGCAACCCTCGATCCGGACC-AATCTTAGAC
* ** * * *
16695321 -TGAGAATGAACTCCGTATGCCTAATTCAACCCACAAAATGAGCGTTCGAGCGCTGAGCCGATCA
192 TTG-GAATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCGTTCGAGCACTGAGCCAACCA
* * * * * * *
16695385 AAAAGGCATAATGCGCAAGTCGGGGATTGGCCCAGTCCCCCTCTGCTTGCTGCTGGTCCTGCTAC
256 AAAAGGCATAATGCGCAAGCCAGGGATCGGCCCAGTCCCCCTCTGCATGCTGCCGATCCCGCTAC
** ** *
16695450 CACAACCCTTGGTCCGA-TGGGGCTTAGACAAGGAAACAACTCCCTATGCCTAAGCTTACCCATG
321 CACAACCCTCAGTCCGACTGGGGCTTAGACAAGGAAACAACTCCCTATGCCTAAGCCAACCCACG
* * * * * *
16695514 AAATCGG-TGTAC-GAGCACTCAGCCGAGT-GGAAAGGTAGAATACGCAAGCCAGGGATTAGCCC
386 AAA-CGGACGTACAG-GCACTCAACCGA-TCGAAAAGGTAGAACACACAAGCCAGGGATCAGCCC
* *
16695576 GATCCTAAC-TG-CGTGCTGTCGATCCTGCTGTCGCAAGCCTCAGTCCGATCCGATCTTAGACTA
448 GATCC-AACTTGTC-TGCTGTCGATCCTGCTATCGCAACCCTCAGTCCGATCCGATCTTAGACTA
**
16695639 GGAATGAACTTTGTATG
511 GGAATGAACTCCGTATG
*
16695656 CTTAGACTGGGGATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
16695683 CTAAGTCAAC
Statistics
Matches: 458, Mismatches: 85, Indels: 22
0.81 0.15 0.04
Matches are distributed among these distances:
525 2 0.00
526 182 0.40
527 160 0.35
528 110 0.24
529 4 0.01
ACGTcount: A:0.26, C:0.28, G:0.25, T:0.21
Consensus pattern (527 bp):
CTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
ACGAAACAAGCATGCAGGCACTCAACCGACCGAAGAGGCAGAATGCGCAAGCCGAGGACTGGCCC
AGCCCCCCTTACATGCTATCAATCCTACTACCGCAACCCTCGATCCGGACCAATCTTAGACTTGG
AATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCGTTCGAGCACTGAGCCAACCAAAAAG
GCATAATGCGCAAGCCAGGGATCGGCCCAGTCCCCCTCTGCATGCTGCCGATCCCGCTACCACAA
CCCTCAGTCCGACTGGGGCTTAGACAAGGAAACAACTCCCTATGCCTAAGCCAACCCACGAAACG
GACGTACAGGCACTCAACCGATCGAAAAGGTAGAACACACAAGCCAGGGATCAGCCCGATCCAAC
TTGTCTGCTGTCGATCCTGCTATCGCAACCCTCAGTCCGATCCGATCTTAGACTAGGAATGAACT
CCGTATG
Found at i:16695680 original size:26 final size:26
Alignment explanation
Indices: 16695630--16695682 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16695620 CCGATCCGAT
**
16695630 CTTAGACTAGGAATGAACTTTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
16695656 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16695682 C
1 C
16695683 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16696734 original size:26 final size:26
Alignment explanation
Indices: 16696705--16696757 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16696695 CTGATCCGAT
16696705 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
*
16696731 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
16696757 C
1 C
16696758 CTAAGTCGAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:16697158 original size:26 final size:26
Alignment explanation
Indices: 16697129--16697181 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16697119 CTGATCCGAT
*
16697129 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16697155 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16697181 C
1 C
16697182 CTAAGAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16698525 original size:26 final size:26
Alignment explanation
Indices: 16698487--16698539 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16698477 GGCTCAAACT
*
16698487 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16698513 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16698539 C
1 C
16698540 CTAAGATAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16698881 original size:27 final size:26
Alignment explanation
Indices: 16698830--16698883 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16698820 TTGATCTGAT
*
16698830 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
16698856 CTTAGACTGGGGATGAATTTCCGTATG
1 CTTAGACTGGGAATGAA-CTCCGTATG
16698883 C
1 C
16698884 CTAGGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 16 0.67
27 8 0.33
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16699069 original size:26 final size:26
Alignment explanation
Indices: 16699027--16699079 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16699017 CTAGTCCGAT
*
16699027 CTTAGACTAGGAGTGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
16699053 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCATATG
16699079 C
1 C
16699080 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:16700260 original size:26 final size:26
Alignment explanation
Indices: 16700231--16700283 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16700221 CCGGTCCAAT
16700231 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16700257 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
16700283 C
1 C
16700284 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16701088 original size:26 final size:26
Alignment explanation
Indices: 16701059--16701111 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16701049 CCAATCCGAT
16701059 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
16701085 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16701111 C
1 C
16701112 CTAAGTCAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16701800 original size:26 final size:26
Alignment explanation
Indices: 16701771--16701823 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16701761 CCGGTCTGAT
*
16701771 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
*
16701797 CTTAGACTGGGGATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
16701823 C
1 C
16701824 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:16702662 original size:26 final size:26
Alignment explanation
Indices: 16702626--16702678 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16702616 TCGGTCTGAT
*
16702626 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16702652 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
16702678 C
1 C
16702679 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16702874 original size:26 final size:26
Alignment explanation
Indices: 16702836--16702888 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16702826 CCAGTTTGAT
*
16702836 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16702862 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16702888 C
1 C
16702889 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16703692 original size:26 final size:26
Alignment explanation
Indices: 16703656--16703705 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
16703646 CTGATCTGAT
*
16703656 CTTAGGCTGGGAATGAACTCCGTACA
1 CTTAGACTGGGAATGAACTCCGTACA
*
16703682 CTTAGACTGGGGATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
16703706 TGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTACA
Found at i:16704418 original size:26 final size:26
Alignment explanation
Indices: 16704389--16704441 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16704379 TCAATCCAAT
16704389 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
16704415 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16704441 C
1 C
16704442 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16705149 original size:740 final size:735
Alignment explanation
Indices: 16703476--16705930 Score: 3150
Period size: 740 Copynumber: 3.3 Consensus size: 735
16703466 GGTCCTGTTG
* * *
16703476 CCACAACCCTCGGTCCGGCTGGGGCTTAGACATTGAATGAACTCCTTATGCCTAAGCCAACCCAC
1 CCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
* * * * * * * * * * *
16703541 GAAACGGGTGTGCGGGCGCTTAGTCGATCGAAGTGGCAGAATGA-GTAAGCTGAAGATCGACCCG
66 GAAACGGGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAAT-ACGCAAGCCGAGGATCGGCTCG
* * * *
16703605 AT-CCCCTGCGTGCTATCGATCCTACTGCTGTAACCCTCGATCTGATCTGATCTTAGGCTGGGAA
130 ATCCCCCTGCATGCTATCGATCCTACTGCCGTAACCCTCGATCAG-TCTGATCTTAGACTGGGAA
* ** * *
16703669 TGAACTCCGTACACTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCAT
194 TGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA-CCACGAAACGAGCGT
* * * * **
16703734 GCGGGTGCTCAGCCGACCAGAGATGCA-AGATGCGTAAGTCGTGAATCGAACATGTGGTAGGTGG
258 GCGGGCGCTCAGCCGACCAGAGAGGCAGA-ATGCGCAAGTCGAGAATCGAACGGGTGGTAGGTGG
* *
16703798 GTTCAAGCACATCTTCATATTTCTACCGTGTCAATGCCATTTTTATGGCTTGTAAATTCATACAA
322 GTTCAAGCACATCTTCATATTTCTACC-CGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* *
16703863 TGGTCCCCTAAGCCTTCATGTGAAGTTTCGTGGCAAGACGACCCATTTTCTATTTTTCATGATTT
386 TGGTCCCCTAAGCCTTCATGTGAAGTTTCGTGGCAAGACGACCCGTTTTCTATTTTTCACGATTT
* * ** * *
16703928 TTTAAACTTTTTATGGTTCGGGATTTTTTTACAATTTTTTTAGAAAGAGTTTTGTCCCCAAATTT
451 TTAAAACTTTTTACGGTTTAGGA-TTTTTTAAAATTCTTTTAGAAAGAGTTTTGTCCCCAAATTT
* * * * *
16703993 GGTATAGGTGATCCTTGTATTTTCTTTGGCATACACAAAAAAATTCAGCTAAAAA--C---T-CA
515 GGTAGAGGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAACTCAGCTAAAAACCCAAGTGGA
* *
16704052 -AAGATTTTGTGATCGTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAGTGGCAGCA
580 GAAGATTTTGTGACCGTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * ** * *
16704116 ACGAGCGTGCGGGCGCTGAGCCGGTTGAAGAGGCATAATGCACAAGCCGAGGATCAGC-CCAGTC
645 ACGAGCGTGCGGGCGTTGAGCAGGCCGAAGAGGCATAATGCACAAGCCAAGGATCAGCTCGA-TC
* * * ** *
16704180 CCCCACTGCATGCTGCCGGTCTTGCTG
709 CCCCTCTGCGTGCTACCGGTCTCACTA
*
16704207 CCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
1 CCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
* * * * * * * *
16704272 GAAATGGGCGTGCGGGTGCTCAGCTGACCGGAGAGGCAAAATGCGCGAGCTGGGGATCGGCTCGA
66 GAAACGGGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATACGCAAGCCGAGGATCGGCTCGA
* * * * * * * **
16704337 TCCCCCCTGCATGTTGTCAATCCTACTGTCATAACCCTCGGTTCAATCCAATCTTAGACTGGGAA
131 T-CCCCCTGCATGCTATCGATCCTACTGCCGTAACCCTC-GATCAGTCTGATCTTAGACTGGGAA
16704402 TGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCTACGAAACGAGCGT
194 TGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACC-ACGAAACGAGCGT
*
16704467 GCGGGCGCTCAGCCGATCAGAGAGGCAGAATGCGCAAGTCGAGAATCGAACGGGTGGTAGGTGGG
258 GCGGGCGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGTCGAGAATCGAACGGGTGGTAGGTGGG
* * *
16704532 TTCAAGCACATCTTCATATTTTTGGCCCACCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
323 TTCAAGCACATCTTCATATTTCT-ACCCGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
** *
16704597 GGTTGCCTAAGCCTTCATGTGAAGTTTCGTTGCAAGACGACCCGTTTTCTATTTTTCACGATTTT
387 GGTCCCCTAAGCCTTCATGTGAAGTTTCGTGGCAAGACGACCCGTTTTCTATTTTTCACGATTTT
*
16704662 TGAAACTTTTTACGGTTTAGGATTTTTTAAAATTCTTTTAGAAAGAGTTTTGTCCCCAAATTTGG
452 TAAAACTTTTTACGGTTTAGGATTTTTTAAAATTCTTTTAGAAAGAGTTTTGTCCCCAAATTTGG
*
16704727 TAGAGGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAACTCAGCTAAAAACCCGAAGTGGAG
517 TAGAGGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAACTCAGCTAAAAACCC-AAGTGGAG
* * *
16704792 AAGATTTTGTGACCTTTTGAAAAAAGTGTCCCCATTTTAGACACTTAAATGGCTACTGGCAGCAA
581 AAGATTTTGTGACCGTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * ** * *
16704857 CGAGCGTGCGGGCGTTGAGCAGGCCGAAAAGGCATAATACGTAAGCTAAGGA-CCGACTCGATCC
646 CGAGCGTGCGGGCGTTGAGCAGGCCGAAGAGGCATAATGCACAAGCCAAGGATCAG-CTCGATCC
*
16704921 CCCTCTGCGTGCTACCGGTCCCACTA
710 CCCTCTGCGTGCTACCGGTCTCACTA
* * *
16704947 CCACAACCCTCAGTCCTACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
1 CCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
* * * * *
16705012 GAAATGGGCGTGCGGGTGCTCAACCGACCGGAGAGGTAGAATACGCAAGCCGAGGATCGGCTTGA
66 GAAACGGGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATACGCAAGCCGAGGATCGGCTCGA
* * * * *
16705077 TCCCCTCTGCATGCTATCGATCCTACTACCGT-CCCCTTCAGTTCCGTTTGATCTTAGACTGGGA
131 TCCCC-CTGCATGCTATCGATCCTACTGCCGTAACCC-TC-GATCAGTCTGATCTTAGACTGGGA
* * * **
16705141 AAGAACTCCATATGCTTAGACTGGGGATGAACTCCATATGCCTAAGTCAAACCAGGAAATAAGCG
193 ATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTC-AACCACGAAACGAGCG
* * * * * *
16705206 TGCGGGCGCTCAGCCGACCAGAAAGGCAGGATGCGCAAG-CTGGGGATTGAACGGGAGGTAGGTG
257 TGCGGGCGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGTC-GAGAATCGAACGGGTGGTAGGTG
*
16705270 GGTTCAAGCACATCTCCATATTTCTACCCTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
321 GGTTCAAGCACATCTTCATATTTCTACCC-GCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* *
16705335 ATGGTCCCCTAAGCCTTCATGTGAAGTTTCGTGGCAAGATGACCCGTTTTCTATTTTTCAGGATT
385 ATGGTCCCCTAAGCCTTCATGTGAAGTTTCGTGGCAAGACGACCCGTTTTCTATTTTTCACGATT
*
16705400 TTTAAAACTTTTTACGG-TTCGAGATTTTTTAAAATTCTTTTAGAAAGAGTTTTGTCCCCAAATT
450 TTTAAAACTTTTTACGGTTTAG-GATTTTTTAAAATTCTTTTAGAAAGAGTTTTGTCCCCAAATT
*
16705464 TGGTAGAGGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAACTCAGCTAAAAACCCAAAGTG
514 TGGTAGAGGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAACTCAGCTAAAAACCC-AAGTG
* * *
16705529 GAGAAGATTTTGTGACCGTTTGAAAAAAGTGTCCCCATTTCAGACATTTTAATGGTTACTAGCAG
578 GAGAAGATTTTGTGACCGTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * * * * *
16705594 CAACGAGTGTGCGGGTGTTGAGCCA-ACCGAAGAGGCATAATGCACAAGCCAGGGATCAGCTTGG
643 CAACGAGCGTGCGGGCGTTGAG-CAGGCCGAAGAGGCATAATGCACAAGCCAAGGATCAGCTCGA
* * *
16705658 TCCCTCTCTGCGTGCTACCGATCTCACTC
707 TCCCCCTCTGCGTGCTACCGGTCTCACTA
* * *
16705687 CCACAACCCT-GGATCCGGCTGGGGCTTAGACATGGAATGAA-TCCCTATGCTTAAGCCAACCCT
1 CCACAACCCTCGG-TCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
* * * * * *
16705750 CGAAACAGACGTGCGGGCGCTCAGTCGGCCGGAGAGGTAGAATGCGCAAGCCGAGGATCGG-TCC
65 CGAAACGGGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATACGCAAGCCGAGGATCGGCT-C
** * * ** * * *
16705814 GATCCCCCTGTGTGCTGTAGATCCTACTGTTGTAACCCTTGATCTGGTCTGATCTTAGACTAGGA
129 GATCCCCCTGCATGCTATCGATCCTACTGCCGTAACCCTCGATC-AGTCTGATCTTAGACTGGGA
*
16705879 ATGAACTCCGTATGCTTAGACT-GGGATGAACTCCGTATGCCTAAGTCAACCA
193 ATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCA
16705931 ATAAAATAAG
Statistics
Matches: 1498, Mismatches: 197, Indels: 53
0.86 0.11 0.03
Matches are distributed among these distances:
731 109 0.07
732 91 0.06
733 293 0.20
734 7 0.00
736 5 0.00
737 27 0.02
738 59 0.04
739 100 0.07
740 797 0.53
741 10 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.27
Consensus pattern (735 bp):
CCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
GAAACGGGCGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATACGCAAGCCGAGGATCGGCTCGA
TCCCCCTGCATGCTATCGATCCTACTGCCGTAACCCTCGATCAGTCTGATCTTAGACTGGGAATG
AACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCACGAAACGAGCGTGCG
GGCGCTCAGCCGACCAGAGAGGCAGAATGCGCAAGTCGAGAATCGAACGGGTGGTAGGTGGGTTC
AAGCACATCTTCATATTTCTACCCGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
CCCTAAGCCTTCATGTGAAGTTTCGTGGCAAGACGACCCGTTTTCTATTTTTCACGATTTTTAAA
ACTTTTTACGGTTTAGGATTTTTTAAAATTCTTTTAGAAAGAGTTTTGTCCCCAAATTTGGTAGA
GGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAACTCAGCTAAAAACCCAAGTGGAGAAGAT
TTTGTGACCGTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAACGAGC
GTGCGGGCGTTGAGCAGGCCGAAGAGGCATAATGCACAAGCCAAGGATCAGCTCGATCCCCCTCT
GCGTGCTACCGGTCTCACTA
Found at i:16705165 original size:26 final size:26
Alignment explanation
Indices: 16705129--16705181 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16705119 TCCGTTTGAT
16705129 CTTAGACTGGGAAAGAACTCCATATG
1 CTTAGACTGGGAAAGAACTCCATATG
* *
16705155 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAAAGAACTCCATATG
16705181 C
1 C
16705182 CTAAGTCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCATATG
Found at i:16705911 original size:25 final size:26
Alignment explanation
Indices: 16705867--16705918 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
16705857 CTGGTCTGAT
16705867 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
16705893 CTTAGACT-GGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16705918 C
1 C
16705919 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 17 0.68
26 8 0.32
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16706817 original size:26 final size:26
Alignment explanation
Indices: 16706781--16706833 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16706771 CTGGTCTGAT
16706781 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16706807 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16706833 C
1 C
16706834 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16707668 original size:26 final size:26
Alignment explanation
Indices: 16707639--16707691 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16707629 CTGGTCCGAT
*
16707639 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
16707665 CTTAGACTGGGGATGAATTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16707691 C
1 C
16707692 CTAATTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16708522 original size:869 final size:847
Alignment explanation
Indices: 16706583--16708588 Score: 2022
Period size: 869 Copynumber: 2.3 Consensus size: 847
16706573 CCCCTCTGTG
* * *
16706583 TGCTGCCAGTCCCGCTGCCATAACCCTTGGTCCGGCTAGGGCTTAAACATGGAATGAACTCCCTA
1 TGCTGCCAGTCCCGCTGCCACAACCCTTGGTCTGGCTGGGGCTTAAACATGGAATGAACTCCCTA
* * * *
16706648 TGACTAAGCCAA-CCACGAAACGGGCGTGCAGGCGCTCAGCCGGCCGAAGAGGTAGAATGCGCAA
66 TGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAGCCGGCC-AAGAGGTAGAATGCGCAA
* * * * * *
16706712 GTCGGGGATCGGCTCAGTCCCCCCTGTGTGTTGTCGATCTTACTGCTGCAACCCTCGATCTGGTC
130 GCCGAGGATCGG-TCAGT-CCCCCTGTGTG-TGTCGATCTTGCTGCCGCAA-CCTCGGTCTGTTC
*
16706777 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCA
191 -GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCA
* * * *
16706842 ACGCACT-AAACGAGCGTGC-GGGCTCTGAGCAGGCCGAAGATGCATAATGCGCAAGCTGAAGAT
255 ACCCA-TGAAACGAGCGTGCGGGGCTCTGAGCAGGCCGAAGAGGCATAATGCGCAACCAGAAGAT
* * *
16706905 CGGCCCGATCCCCTTCTACGTACTGCCGGTCCCGCTGCCACAACCCTCAATCTGACTGGGGCTTA
319 CAGCCCGATCCCCTTCTACGTACTGCCGGTCCCGCTACCACAACCCTCAATCCGACTGGGGCTTA
* * * **
16706970 GACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTATGGGTGCTCAACCGAC
384 GACATGGAATGAACTCCGTATGCCCAAGCCAACCCATAAAACGAGCGTACGGGCACTCAACCGAC
* ** * * *
16707035 CAGAGAGGCAGAATGTGGAAGCCGGGGATCAGCCCGATCCCCCTTACGTGCTGTCGATCCTACTG
449 CAAAGAGGCAGAATACGCAAGCCGAGGATCAACCCGATCCCCC-T-CGTGCTGTCGA--CTACTG
* * * *
16707100 CTGGTCCTGCTACTGCAACCCTCAACTCGGTCTGATCTTACACTGGGAATGAACTTTTTATGCTT
510 CTGATCCTGCTACCGCAACCCTCAACCCGGTCTGATCTTACACTGGGAATGAACTTGTTATGCTT
* * ** **
16707165 AGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGACACTCAGTCAG
575 AGACATGGAAAGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGACACTCAACCAG
* * * * * *
16707230 TCGGAGAGGTAGAATGCATAAGCCGGGGATCGACCCGATCCCCCCTTTGTGTGCTGTCAATCTGG
640 TCGGAGAGGAAGAATGCACAAACCGAGGATCGACCCGATCCCCCC-TTGCGTGCTATCAATCTGG
* * * * ** *
16707295 CTGCTGCAACCCTCGGTCTAGTCTAATTTTAGACTGGGAATGAACTCTGTATGCATAAGTCAACC
704 CTGCCGCAACCCTAGGTCCAATCTAATCGTAGACTGGAAATGAACTCTGTATGCATAAGTCAACC
* * * ** * *
16707360 TATGAAACGAGCGTACAGGCACTGAGCCGGCCGAAGAGGCATAATGTGCAAACTGGGGATCGGCT
769 CACGAAACGAGCGTACA-GCACTGAGCCGACCGAAGAGGCATAATGCACAAACTGGGGATCGACA
* * *
16707425 CGGTCACCCTCTGCG
833 CAGTCACCCTCTACA
* ** **** * * *
16707440 TGCTACTGGTGTTACTGCCACAACCCTCGGTTTGACTGGGGCTTAAACATGGAATGAACTCCCTA
1 TGCTGCCAGTCCCGCTGCCACAACCCTTGGTCTGGCTGGGGCTTAAACATGGAATGAACTCCCTA
* * * * * * *
16707505 TGCCTAAGCCAACCCATGAAATGGGCGTGCGGGTGCTCAGTCGACCGGAGAGGTGGAATGTGCAT
66 TGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAGCCGGCC-AAGAGGTAGAATGCGCAA
* * * * * * *
16707570 GCCGAGGATCGACTCAGTCCCGTCTGCGTGCTGTTGATCTTGCTGCCACAATCCTCAGTCTGGTC
130 GCCGAGGATCG-GTCAGTCCC-CCTGTGTG-TGTCGATCTTGCTGCCGCAA-CCTCGGTCT-GTT
* * *
16707635 CGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAATTCTGTATGCCTAATTCA
190 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCA
* * *
16707700 ACCCATGAAACGAGCATGCGGGTGCTTAACCGGTCGAAG-AGGCCGACCAGAGAGGTATAATGTG
255 ACCCATGAAACGAGCGTGCGGG-GC-T---C--T-G-AGCAGGCCG---A-AGAGGCATAATGCG
* *
16707764 TAATCCAG-AGATCAGCCCGATCCCCTTCTGCATGCTATCAAT-CTCGCTGTCGATCCTGCTACC
307 CAA-CCAGAAGATCAGCCCGATCCCCTTCT--ACG-TA-C--TGC-CG--GTC---CC-GCTACC
* ** *
16707827 ATAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCCAGGCCAACCCATAA
358 ACAACCCTCAATCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCCAAGCCAACCCATAA
* * * * *
16707892 AAGGAGCGTACGGGCACTTAGCTGGCCAAAGAGGCA-AATACGCAAGCCGAGGATCAACCCGATC
423 AACGAGCGTACGGGCACTCAACCGACCAAAGAGGCAGAATACGCAAGCCGAGGATCAACCCGATC
* * * *
16707956 CCCC-C-TGC-GT-G-CT-GT-C-GATCCTGCTACCGCAACCCTCGACCCAGT-TCGATCTTAGA
488 CCCCTCGTGCTGTCGACTACTGCTGATCCTGCTACCGCAACCCTCAACCCGGTCT-GATCTTACA
*
16708012 CTGGGAATGAACTCTGTT-TGCTTAGACATGGAAAGAACTCCGTATGCCTAAGCCAACCCATGAA
552 CTGGGAATGAACT-TGTTATGCTTAGACATGGAAAGAACTCCGTATGCCTAAGCCAACCCACGAA
*** * *
16708076 ACGAACGTGCGGGTGCTCAACC-GGCTGGAGAGGAAGAATTCACAAACCGAGGATCGACCCGATC
616 ACGAACGTGCGGACACTCAACCAGTC-GGAGAGGAAGAATGCACAAACCGAGGATCGACCCGATC
* * * * *
16708140 CCCGCC-TGCGTGCTATCGATCTTGCTGCCGTAAGCCTAGGTCCAATCTGATCGTAGACTGGAAA
680 CCC-CCTTGCGTGCTATCAATCTGGCTGCCGCAACCCTAGGTCCAATCTAATCGTAGACTGGAAA
* * * * * *
16708204 TGAACT-TCGTATGCCTAAGTCAACCCACGAAATGAGCGTGC-GTACGTTGAGTCGATCGAAGAG
744 TGAACTCT-GTATGCATAAGTCAACCCACGAAACGAGCGTACAGCAC--TGAGCCGACCGAAGAG
*
16708267 GCATAATGCACAAGCTGGGGATCGACACAGTC-CCTCTCTACA
806 GCATAATGCACAAACTGGGGATCGACACAGTCACC-CTCTACA
* * * * *
16708309 TGCTGCCAGTCCCGCTGCGACAACCATTGGTCTGGTTGGGGCTGAGACATGGAATGAACTCCCTA
1 TGCTGCCAGTCCCGCTGCCACAACCCTTGGTCTGGCTGGGGCTTAAACATGGAATGAACTCCCTA
* * * * *
16708374 TGCCTAAGCCAACCCATGAAATGGGCGTGTGGGCACTCAGCCGGCTACAGAGGCAGAATACGCAA
66 TGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAGCCGGCCA-AGAGGTAGAATGCGCAA
* * * *
16708439 GCCGAGGATCGGTCCGATCCACCCTGTGTGTGGTCGATCCTGCTACCGCAACCTTCGGTCCGATT
130 GCCGAGGATCGGTCAG-TCC-CCCTGTGTGT-GTCGATCTTGCTGCCGCAACC-TCGGTCTG-TT
*
16708504 CGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCA
190 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCA
*
16708569 ACCCACGAAACGAGCGTGCG
255 ACCCATGAAACGAGCGTGCG
16708589 AGCGTTCAGC
Statistics
Matches: 928, Mismatches: 174, Indels: 82
0.78 0.15 0.07
Matches are distributed among these distances:
857 67 0.07
858 160 0.17
859 4 0.00
860 2 0.00
861 1 0.00
864 1 0.00
866 1 0.00
867 10 0.01
868 12 0.01
869 347 0.37
870 141 0.15
871 39 0.04
872 3 0.00
873 4 0.00
874 2 0.00
875 1 0.00
876 2 0.00
877 5 0.01
878 3 0.00
879 4 0.00
882 29 0.03
883 90 0.10
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (847 bp):
TGCTGCCAGTCCCGCTGCCACAACCCTTGGTCTGGCTGGGGCTTAAACATGGAATGAACTCCCTA
TGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAGCCGGCCAAGAGGTAGAATGCGCAAG
CCGAGGATCGGTCAGTCCCCCTGTGTGTGTCGATCTTGCTGCCGCAACCTCGGTCTGTTCGATCT
TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCAT
GAAACGAGCGTGCGGGGCTCTGAGCAGGCCGAAGAGGCATAATGCGCAACCAGAAGATCAGCCCG
ATCCCCTTCTACGTACTGCCGGTCCCGCTACCACAACCCTCAATCCGACTGGGGCTTAGACATGG
AATGAACTCCGTATGCCCAAGCCAACCCATAAAACGAGCGTACGGGCACTCAACCGACCAAAGAG
GCAGAATACGCAAGCCGAGGATCAACCCGATCCCCCTCGTGCTGTCGACTACTGCTGATCCTGCT
ACCGCAACCCTCAACCCGGTCTGATCTTACACTGGGAATGAACTTGTTATGCTTAGACATGGAAA
GAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGACACTCAACCAGTCGGAGAGGAA
GAATGCACAAACCGAGGATCGACCCGATCCCCCCTTGCGTGCTATCAATCTGGCTGCCGCAACCC
TAGGTCCAATCTAATCGTAGACTGGAAATGAACTCTGTATGCATAAGTCAACCCACGAAACGAGC
GTACAGCACTGAGCCGACCGAAGAGGCATAATGCACAAACTGGGGATCGACACAGTCACCCTCTA
CA
Found at i:16709457 original size:26 final size:26
Alignment explanation
Indices: 16709416--16709468 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16709406 CTGGTCTGAT
16709416 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
16709442 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
16709468 C
1 C
16709469 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:16709552 original size:185 final size:185
Alignment explanation
Indices: 16709240--16709572 Score: 440
Period size: 185 Copynumber: 1.8 Consensus size: 185
16709230 TCATAGATTG
*
16709240 GGAATGAACTCCGTATGCTTAGAAATGGAATGAACTACGTATGCCTAAGCCAACCCACGAAACGA
1 GGAATGAACTCCATATGCTTAGAAATGGAATGAACTACGTATGCCTAAGCCAACCCACGAAACGA
* * *
16709305 GCGTGCAGGCACTCAACCGGCCGAAAAGGCAGAATGCACAAGCTGGAGATCGGCTCGATCCCCC-
66 GCGTACAGGCACTCAACCGGCCGAAAAGGCAGAATGCACAAGCCGGAGAACGGCTCGATCCCCCT
*
16709369 CTTACATGCTGTCGATCCTACTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTA
131 C-TACATGCTGCCGATCCTACTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTA
* * * * *
16709425 GGAATGAACTCCATATGCTTAG-ACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACG
1 GGAATGAACTCCATATGCTTAGAAAT-GGAATGAACTACGTATGCCTAAGCCAACCCACGAAACG
* * * * ** *
16709489 AGCGTACGAGG-GCTCAACTGGCCGAAGAGGCATAATGCGTAAGCC-GAGGAACTGCTCGATCCC
65 AGCGTAC-AGGCACTCAACCGGCCGAAAAGGCAGAATGCACAAGCCGGA-GAACGGCTCGATCCC
*
16709552 CCTCTGCATGCTGCCGATCCT
128 CCTCTACATGCTGCCGATCCT
16709573 GCTACTGAAC
Statistics
Matches: 126, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
184 4 0.03
185 118 0.94
186 4 0.03
ACGTcount: A:0.27, C:0.28, G:0.25, T:0.20
Consensus pattern (185 bp):
GGAATGAACTCCATATGCTTAGAAATGGAATGAACTACGTATGCCTAAGCCAACCCACGAAACGA
GCGTACAGGCACTCAACCGGCCGAAAAGGCAGAATGCACAAGCCGGAGAACGGCTCGATCCCCCT
CTACATGCTGCCGATCCTACTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTA
Found at i:16710077 original size:158 final size:159
Alignment explanation
Indices: 16709810--16710097 Score: 346
Period size: 158 Copynumber: 1.8 Consensus size: 159
16709800 ACTCCGTATG
* * * ** * *
16709810 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATAAACTCCGTATGCCCAAGCCAACCCACAAAATGAGCGTACGGGAGCTCAGC
* * * * * * * *
16709875 CGACCGGAGAGGTAGAGTGCGCAAGCCAGGGATCAGCCTAGTCCC-CTCTATGTGTTGTCGATCC
66 CGACCGAAGAGGAAGAATGCGCAAGCCAAGGATCAGCCCAGTCCCTCTCTACGTGCTGCCGATCC
16709939 TGCTACTGTAACCCTTGGTCCGATCCGAT
131 TGCTACTGTAACCCTTGGTCCGATCCGAT
* *
16709968 CTTAGAC-TAGGAATAAACTCCGTATGCCCAAGTCAACCCACAAAATGAGCGTACGGGAGCTGAG
1 CTTAGACAT-GGAATAAACTCCGTATGCCCAAGCCAACCCACAAAATGAGCGTACGGGAGCTCAG
** * * * *
16710032 CCGGTCGAAGAGGAATAATGCGTAAGCCAAGGATCGGCCCGGTCCCTCTCTACGTGCTGCCGATC
65 CCGACCGAAGAGGAAGAATGCGCAAGCCAAGGATCAGCCCAGTCCCTCTCTACGTGCTGCCGATC
16710097 C
130 C
16710098 CACTGCCACA
Statistics
Matches: 105, Mismatches: 23, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
157 1 0.01
158 88 0.84
159 16 0.15
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.20
Consensus pattern (159 bp):
CTTAGACATGGAATAAACTCCGTATGCCCAAGCCAACCCACAAAATGAGCGTACGGGAGCTCAGC
CGACCGAAGAGGAAGAATGCGCAAGCCAAGGATCAGCCCAGTCCCTCTCTACGTGCTGCCGATCC
TGCTACTGTAACCCTTGGTCCGATCCGAT
Found at i:16710314 original size:26 final size:26
Alignment explanation
Indices: 16710285--16710340 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
16710275 CCGATCTGAT
*
16710285 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16710311 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16710337 CTTA
1 CTTA
16710341 TGTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16711034 original size:26 final size:26
Alignment explanation
Indices: 16710996--16711048 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16710986 GGCTCAAAAT
*
16710996 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGGATG
16711022 CTTAGACAT-GGAATGAACTTCGGATG
1 CTTAGAC-TGGGAATGAACTTCGGATG
16711048 C
1 C
16711049 CGAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGGATG
Found at i:16711536 original size:26 final size:26
Alignment explanation
Indices: 16711496--16711548 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16711486 CCGATCCAAT
*
16711496 CTTATACTGGAGATGAACTCTGTATG
1 CTTAGACTGGAGATGAACTCTGTATG
*
16711522 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGAGATGAACTCTGTATG
16711548 C
1 C
16711549 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGAGATGAACTCTGTATG
Found at i:16718500 original size:159 final size:158
Alignment explanation
Indices: 16718156--16718520 Score: 376
Period size: 158 Copynumber: 2.3 Consensus size: 158
16718146 AACTCCATAT
* * * * *
16718156 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCATACAGGCACTCAG
* * * *
16718221 TCGACTAAAAAGGCAGAATGTGTAAGCCGAGGATCAGCCCAGTCCCCCCTGCGTGCTGTCAATCC
66 CCGACCAAAAAGGCAGAATGCGTAAGCCGAGGATCAGCCCAATCCCCCCTGCGTGCTGTCAATCC
* *
16718286 TGCTACCGCAACCCGCGGTCCGATCCGA
131 CGCTACCACAACCCGCGGTCCGATCCGA
* * * * *
16718314 TCTTAGAC-TGGGAATGAACTCCGTATGCATAGGTCAACCCACGAAACGAGCATACGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCATACAGGCACTCA
* * * * * * *
16718378 GCCGACCGAAGAGGCATAATGCGTAAGTCGGGGATC-GATCCAATCCCCCTCTGCGTGCTGTCAG
65 GCCGACCAAAAAGGCAGAATGCGTAAGCCGAGGATCAG-CCCAATCCCCC-CTGCGTGCTGTCAA
* * * * * *
16718442 TCCCGCTGCCACAACCCTCGGTCTG-GCTGGG
128 TCCCGCTACCACAACCCGCGGTCCGATC-CGA
* * * *
16718473 GCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCATGAAACG
1 GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACG
16718521 GGCGTGTGGG
Statistics
Matches: 166, Mismatches: 36, Indels: 9
0.79 0.17 0.04
Matches are distributed among these distances:
157 2 0.01
158 90 0.54
159 73 0.44
160 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.25, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCATACAGGCACTCAG
CCGACCAAAAAGGCAGAATGCGTAAGCCGAGGATCAGCCCAATCCCCCCTGCGTGCTGTCAATCC
CGCTACCACAACCCGCGGTCCGATCCGA
Found at i:16718558 original size:159 final size:158
Alignment explanation
Indices: 16718156--16718558 Score: 400
Period size: 159 Copynumber: 2.5 Consensus size: 158
16718146 AACTCCATAT
*
16718156 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
16718221 TCGACTAAAAAGGCAGAATGTGTAAGCCGAGGATCAGCCCAGTCCCCCCTGCGTGCTGTCAATCC
66 CCGACCAGAGAGGCAAAATGCGTAAGCCGAGGATCAGCCCAATCCCCCCTGCGTGCTGTCAATCC
* *
16718286 TGCTACCGCAACCCGCGGTCCGATCCGA
131 CGCTACCACAACCCGCGGTCCGATCCGA
* * * * * * * * *
16718314 TCTTAGAC-TGGGAATGAACTCCGTATGCATAGGTCAACCCACGAAACGAGCATACGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * *
16718378 GCCGACC-GAAGAGGCATAATGCGTAAGTCGGGGATC-GATCCAATCCCCCTCTGCGTGCTGTCA
65 GCCGACCAG-AGAGGCAAAATGCGTAAGCCGAGGATCAG-CCCAATCCCCC-CTGCGTGCTGTCA
* * * * * * *
16718441 GTCCCGCTGCCACAACCCTCGGTCTG-GCTGGG
127 ATCCCGCTACCACAACCCGCGGTCCGATC-CGA
* * * * * * *
16718473 GCTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCATGAAACGGGCGTGTGGGTGCTTAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
16718538 CCGACCAGAGAGGCAAAATGC
66 CCGACCAGAGAGGCAAAATGC
16718559 ACAAACTGGG
Statistics
Matches: 193, Mismatches: 45, Indels: 13
0.77 0.18 0.05
Matches are distributed among these distances:
157 2 0.01
158 89 0.46
159 100 0.52
160 2 0.01
ACGTcount: A:0.26, C:0.30, G:0.26, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CCGACCAGAGAGGCAAAATGCGTAAGCCGAGGATCAGCCCAATCCCCCCTGCGTGCTGTCAATCC
CGCTACCACAACCCGCGGTCCGATCCGA
Found at i:16718660 original size:26 final size:26
Alignment explanation
Indices: 16718631--16718683 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16718621 TCGATCTGAT
*
16718631 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16718657 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16718683 C
1 C
16718684 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16719049 original size:26 final size:26
Alignment explanation
Indices: 16719010--16719063 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
16719000 CCCGATCTAA
16719010 GCTTAGACTGGGAATGAACTCCGTAT
1 GCTTAGACTGGGAATGAACTCCGTAT
*
16719036 GCTTAGACAT-GGAATGAACTCTGTAT
1 GCTTAGAC-TGGGAATGAACTCCGTAT
16719062 GC
1 GC
16719064 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
GCTTAGACTGGGAATGAACTCCGTAT
Found at i:16719541 original size:26 final size:26
Alignment explanation
Indices: 16719512--16719564 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16719502 CTAGTCCGAT
16719512 CTTAGACTAGGAATGAACTCTATATG
1 CTTAGACTAGGAATGAACTCTATATG
* * *
16719538 CTTAGACTGGGGATGATCTCTATATG
1 CTTAGACTAGGAATGAACTCTATATG
16719564 C
1 C
16719565 CTCAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTATATG
Found at i:16720286 original size:26 final size:26
Alignment explanation
Indices: 16720244--16720296 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16720234 AGTTCAAAAT
16720244 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
16720270 CTTAGACAT-GGATTGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16720296 C
1 C
16720297 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16720786 original size:26 final size:26
Alignment explanation
Indices: 16720745--16720797 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16720735 CCATTCTAAT
16720745 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
16720771 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16720797 C
1 C
16720798 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16721645 original size:26 final size:26
Alignment explanation
Indices: 16721609--16721661 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16721599 CTGGTTCGAT
16721609 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16721635 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16721661 C
1 C
16721662 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16728270 original size:26 final size:26
Alignment explanation
Indices: 16728232--16728284 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16728222 GGCTCAAAAT
*
16728232 CTTAGACTGGGAATGAACTGCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16728258 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16728284 C
1 C
16728285 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16728652 original size:159 final size:158
Alignment explanation
Indices: 16728257--16728658 Score: 416
Period size: 159 Copynumber: 2.5 Consensus size: 158
16728247 AACTGCGTAT
* * * ** * *
16728257 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACAAAATGAACGCACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGTTCAG
* * * * * * *
16728322 TCGGCCGGAGAGGCAGAATGGGCAAGCCGGGGATCGGTCTGATCCCCTCCTGTGTGCTATCGATC
66 CCGACCGGAGAGGCAGAATGAGCAAGCCGAGGATCAGTCTGATCCCCTCATGTGTGCCA-CGATC
** *
16728387 CTGCTACCGCAACCATCGGTCTGGTCTAA
130 CCACTACCACAACCATCGGTCTGGTCTAA
* * * * * *
16728416 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCGCGAAACGAGCGTGCGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGTTCA
** * *
16728480 GCCGATAGAAGAGGCATAATGAGCAAGCCGAGGATCAGTCTGATCCCCCTCTATGTGTTGCCA-G
65 GCCGACCGGAGAGGCAGAATGAGCAAGCCGAGGATCAGTCTGAT-CCCCTC-ATGTG-TGCCACG
* * *
16728544 -TCCCACTGCCACAACCCTCGGTCTGG-CTAGG
127 ATCCCACTACCACAACCATCGGTCTGGTCTA-A
* * * *
16728575 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCGACCCACAAAACGGGCGTGCGGGCATTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGTTCAG
16728640 CCGACCGGAGAGGCAGAAT
66 CCGACCGGAGAGGCAGAAT
16728659 ACGTAAGTCA
Statistics
Matches: 193, Mismatches: 44, Indels: 12
0.78 0.18 0.05
Matches are distributed among these distances:
158 4 0.02
159 173 0.90
160 8 0.04
161 4 0.02
162 4 0.02
ACGTcount: A:0.25, C:0.28, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGTTCAG
CCGACCGGAGAGGCAGAATGAGCAAGCCGAGGATCAGTCTGATCCCCTCATGTGTGCCACGATCC
CACTACCACAACCATCGGTCTGGTCTAA
Found at i:16729133 original size:184 final size:185
Alignment explanation
Indices: 16728943--16729284 Score: 461
Period size: 184 Copynumber: 1.9 Consensus size: 185
16728933 TCCGACTGGG
* *
16728943 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCACGAAACGAGCGTACGGGCGCTCAA
* * *
16729008 CCGATCGGAGAGGTAGAATGCACAAGCCGAGGATCAGCTCGGTCCCC-CCTACATGCTATCGATC
66 CCGATCGGAGAGGTAAAATACACAAGCCGAGGATCAGCCCGGTCCCCTCCTACATGCTATCGATC
***
16729072 CTGCTGTTGCAACCCTCGACCTGGTCTGATCTTAGACTGGGAATGAATTTCATAT
131 CTGCTACCGCAACCCTCGACCTGGTCTGATCTTAGACTGGGAATGAATTTCATAT
* * * * *
16729127 GCTTAGACATGGAATGAATTTCGTATGCCTAAACCAACCTACGAAACGAGCGTACGGGCGTTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCACGAAACGAGCGTACGGGCGCTCAA
* *** * * * * *
16729192 TCGATCGGAGAGGTAAAATATGTAAGCCGAGGATCGGCCCGGTCCCCTCTTGCGTGCTATTGATC
66 CCGATCGGAGAGGTAAAATACACAAGCCGAGGATCAGCCCGGTCCCCTCCTACATGCTATCGATC
* *
16729257 CTGCTACCGTAACCCTCGATCTGGTCTG
131 CTGCTACCGCAACCCTCGACCTGGTCTG
16729285 GTCTGGTCTG
Statistics
Matches: 133, Mismatches: 24, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
184 97 0.73
185 36 0.27
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.23
Consensus pattern (185 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCACGAAACGAGCGTACGGGCGCTCAA
CCGATCGGAGAGGTAAAATACACAAGCCGAGGATCAGCCCGGTCCCCTCCTACATGCTATCGATC
CTGCTACCGCAACCCTCGACCTGGTCTGATCTTAGACTGGGAATGAATTTCATAT
Found at i:16729140 original size:26 final size:26
Alignment explanation
Indices: 16729102--16729154 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16729092 CTGGTCTGAT
16729102 CTTAGACTGGGAATGAATTTCATATG
1 CTTAGACTGGGAATGAATTTCATATG
*
16729128 CTTAGACAT-GGAATGAATTTCGTATG
1 CTTAGAC-TGGGAATGAATTTCATATG
16729154 C
1 C
16729155 CTAAACCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.13, G:0.23, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAATTTCATATG
Found at i:16729650 original size:26 final size:26
Alignment explanation
Indices: 16729614--16729669 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
16729604 CCAATCCGAT
**
16729614 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16729640 CTTAGACTGGGCATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
16729666 CTTA
1 CTTA
16729670 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16730386 original size:26 final size:26
Alignment explanation
Indices: 16730348--16730400 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16730338 GGCTCAAAAT
16730348 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16730374 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16730400 C
1 C
16730401 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16730885 original size:26 final size:26
Alignment explanation
Indices: 16730849--16730899 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16730839 CTGATCCAAT
*
16730849 CTTAGACTGGGAATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16730875 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
16730900 ACCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16731957 original size:26 final size:26
Alignment explanation
Indices: 16731919--16731971 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16731909 TCGATCCTAT
16731919 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16731945 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16731971 C
1 C
16731972 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16732056 original size:196 final size:196
Alignment explanation
Indices: 16731714--16732074 Score: 472
Period size: 196 Copynumber: 1.8 Consensus size: 196
16731704 ACCCTTGGTC
* *
16731714 CGATCCCATCTTAGACTAGGAATGAGCCCCGTATGCTTAGACTGGCGATGAACTCCGTATGCCTA
1 CGATCCCATCTTAGACTAGGAATGAACCCCGTATGCTTAGACTGGCAATGAACTCCGTATGCCTA
* * * * * * * * * *
16731779 TGTCAACCCATGAAACAAGCGTGTGGGCACTCAGCCGGTCGGAGTGGCAGAATGTGCAAGTCGGG
66 AGCCAACCCACGAAACAAGCATGCGGGCACTCAACCGATCGGAGAGGCAGAATGCGCAAGTCGAG
* ** ** *
16731844 GATCAGCCTGGTCCCCCCTGTGTGCTGTCGATCCTGCTGCTGGTCCTTCTACCGTAACCCCTAGT
131 GATCAACCCAGTCCCCCCTGCATGCTATCGATCCTGCTGCTGGTCCTTCTACCGTAACCCCTAGT
16731909 T
196 T
* * *
16731910 CGATCCTATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGG-AATGAACTCCGTATGCCT
1 CGATCCCATCTTAGACTAGGAATGAACCCCGTATGCTTAGAC-TGGCAATGAACTCCGTATGCCT
* * * *
16731974 AAGCCAACCCACGAAACAAGTATGCGGGCGCTCAACTGATCGGAGAGGTAGAATGCGCAAGTCGA
65 AAGCCAACCCACGAAACAAGCATGCGGGCACTCAACCGATCGGAGAGGCAGAATGCGCAAGTCGA
*
16732039 GTATCAACCCAGTCCCCCCTGCATGCTATCGATCCT
130 GGATCAACCCAGTCCCCCCTGCATGCTATCGATCCT
16732075 ACTGTCGCAA
Statistics
Matches: 138, Mismatches: 26, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
196 135 0.98
197 3 0.02
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.23
Consensus pattern (196 bp):
CGATCCCATCTTAGACTAGGAATGAACCCCGTATGCTTAGACTGGCAATGAACTCCGTATGCCTA
AGCCAACCCACGAAACAAGCATGCGGGCACTCAACCGATCGGAGAGGCAGAATGCGCAAGTCGAG
GATCAACCCAGTCCCCCCTGCATGCTATCGATCCTGCTGCTGGTCCTTCTACCGTAACCCCTAGT
T
Found at i:16732471 original size:26 final size:26
Alignment explanation
Indices: 16732435--16732487 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16732425 TCGGTCTGAT
16732435 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16732461 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16732487 C
1 C
16732488 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16734049 original size:26 final size:26
Alignment explanation
Indices: 16734013--16734065 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16734003 TTGGTCCGAT
*
16734013 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16734039 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16734065 C
1 C
16734066 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16734593 original size:26 final size:26
Alignment explanation
Indices: 16734564--16734619 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
16734554 CCAGTCTGAC
16734564 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
16734590 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
16734616 CTTA
1 CTTA
16734620 AGTCAACCCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:16734985 original size:26 final size:26
Alignment explanation
Indices: 16734956--16735008 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16734946 CCGGTCTGAT
16734956 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
16734982 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16735008 C
1 C
16735009 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16735144 original size:392 final size:394
Alignment explanation
Indices: 16734416--16735376 Score: 1019
Period size: 392 Copynumber: 2.4 Consensus size: 394
16734406 TATGAGACTG
* * * * * ** * * *
16734416 GGAATCAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCACTGAGCCGATCGGAG
1 GGAATCAACTCCGTATGCCTAAGCCAACCCACAAAACGAACATGCAAGCACTCAGTCGATCGAAG
* * ** * * ** * * **
16734481 ATGCAGAATGTACAAG-TCGGGGATCGACCTGGTCCCT--CAACGTGCTGTTGATCCTACTGTCG
66 AGGTAGAATGCGCAAGCT-GGAGACCGACCTGGTCCCTCCCTGCGTGCTGTCGATCCTGCTACCG
* * * * *
16734543 CAACCCTTGATCCAGTCTGACCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAAC
130 CAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAAC
* * * * *
16734608 TCTGTATGCTTAAGTCAACCCATGAAACGCGCATGCGGGTGCTCAGTAGGCCTATGAGGCCTACT
195 TCTGTATGCCTAAGTCAACCCATGAAACGAGCATACAGGCGCTCAGTAGGCCTATGAGGCCTACT
* * * * * * *
16734673 GGAAAGATAAAATGCACAAGCCGGGGATCAGCTCGTTCCCCCCTACATGCTGTCGATCCTACTAT
260 AGAAAGACAAAATGCACAAGCCAGGGATCAGCCCGGTCCCCCCTACATGCTATCGATCCTACTAC
* *
16734738 TGGTCCCGCTGCCATAACCCTCGGTTC-AGTCCGATCTTAGACTGGGAATGAACTCCATATGCTT
325 TGGTCCCACTGCCATAACCCTCGGATCGA-TCCGATCTTAGACTGGGAATGAACTCCATATGCTT
16734802 AGACAT
389 AGACAT
** ** ** *
16734808 GGAATCAA-TACC-TATGCCTAAGCCAACCCATGAAACGGGCAT-CTGGGCACTCAGTCG-GCTG
1 GGAATCAACT-CCGTATGCCTAAGCCAACCCACAAAACGAACATGC-AAGCACTCAGTCGATC-G
* * * * *
16734869 GAGAGGTAGAATGCGCAAGCTGGGGATCG-GCTCGGTCCC-CCCTGCGTGCTGTCGATCTTGCTA
63 AAGAGGTAGAATGCGCAAGCTGGAGACCGACCT-GGTCCCTCCCTGCGTGCTGTCGATCCTGCTA
16734932 CCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATG
127 CCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATG
* ** * * *
16734997 AACTCTGTATGCCTAAGTCAACCCATGAAATGAGTGTATAGGCGTTCAGTCGGCCT-TAGAGGCC
192 AACTCTGTATGCCTAAGTCAACCCATGAAACGAGCATACAGGCGCTCAGTAGGCCTAT-GAGGCC
* * * * * * * * *
16735061 -AGTTAGAGAGGCAGAATGCATAAGCCAGGGATCGGCCCGGTCCCCCCTGCGTGCTATTGATCCT
256 TA-CTAGAAAGACAAAATGCACAAGCCAGGGATCAGCCCGGTCCCCCCTACATGCTATCGATCCT
* * * *
16735125 ACTGCTGGTCCTACTGCCATAACCCTCGGATCGATCTGATCTTAGACTGGGAATGAACTCCGTAT
320 ACTACTGGTCCCACTGCCATAACCCTCGGATCGATCCGATCTTAGACTGGGAATGAACTCCATAT
16735190 GCTTAGACAT
385 GCTTAGACAT
* * * * *
16735200 GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAACGTGCAAGCCCTTAGTCGATCGAAG
1 GGAATCAACTCCGTATGCCTAAGCCAACCCACAAAACGAACATGCAAGCACTCAGTCGATCGAAG
** * * *
16735265 AGGTAGAATGCGCAAGCTGGAGACCGACCTGGTCCCTTTCTTCGTGCTGTCGATCCTGCTGCCGT
66 AGGTAGAATGCGCAAGCTGGAGACCGACCTGGTCCCTCCCTGCGTGCTGTCGATCCTGCTACCGC
*
16735330 AACCCTCTGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
131 AACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
16735377 CTAAGTCAAC
Statistics
Matches: 473, Mismatches: 80, Indels: 30
0.81 0.14 0.05
Matches are distributed among these distances:
390 4 0.01
391 70 0.15
392 259 0.55
393 68 0.14
394 72 0.15
ACGTcount: A:0.24, C:0.27, G:0.26, T:0.23
Consensus pattern (394 bp):
GGAATCAACTCCGTATGCCTAAGCCAACCCACAAAACGAACATGCAAGCACTCAGTCGATCGAAG
AGGTAGAATGCGCAAGCTGGAGACCGACCTGGTCCCTCCCTGCGTGCTGTCGATCCTGCTACCGC
AACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACT
CTGTATGCCTAAGTCAACCCATGAAACGAGCATACAGGCGCTCAGTAGGCCTATGAGGCCTACTA
GAAAGACAAAATGCACAAGCCAGGGATCAGCCCGGTCCCCCCTACATGCTATCGATCCTACTACT
GGTCCCACTGCCATAACCCTCGGATCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAG
ACAT
Found at i:16735203 original size:26 final size:26
Alignment explanation
Indices: 16735165--16735217 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16735155 TCGATCTGAT
16735165 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16735191 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16735217 C
1 C
16735218 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16735840 original size:159 final size:160
Alignment explanation
Indices: 16735191--16735850 Score: 508
Period size: 159 Copynumber: 4.2 Consensus size: 160
16735181 ACTCCGTATG
* *
16735191 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAACGTGCAAGCC-CTTA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCAAGCCGCTCA
** * * * * * * * * *
16735254 GTCGA-TCGAAGAGGTAGAATGCGCAAGCT-GGAGACCGACCTGGTCCCTTTCTTCGTGCTGTCG
65 ACCGACTCGGAGAGGCAGAATGCACAAGCTAGG-GATCGACCCGATCCC-CTCTGCGTGCTGTCA
* * *
16735317 ATCCTGCTGCCGTAACCCTCTGTCCGGTCTGAT
128 ATCCTGCTGCCGCAACCCTCGGTCCGATCTGAT
* * ** *
16735350 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTTCAAG-CATTGAA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCAAGCCGCTCAA
* * * * * * *
16735414 CCG-GTCGGAGAGGCATAATGCACAAAC-CGAGGATCAACCCGTTCCCCCTCTGCGTGCTGCCAA
66 CCGACTCGGAGAGGCAGAATGCACAAGCTAG-GGATCGACCCGAT-CCCCTCTGCGTGCTGTCAA
* **
16735477 TCCTGCTGCC-CTAACCCTCGATCCGA-CTGGGG
129 TCCTGCTGCCGC-AACCCTCGGTCCGATCT-GAT
* * * ** * * ** *
16735509 CTTAGACAT-GGAATTAACTCCCTATGCCTAAGCTAACCCA-TGAA-GCGGGTGCGCGGTCGCTC
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGC-AAGCCGCTC
* * * * * * *
16735571 AATCGAC-CGGACAGGTAGAATGCACAAGCCATGGATCGGCCC-AGTCCCCTCTGCGTGCTTTCA
64 AACCGACTCGGAGAGGCAGAATGCACAAGCTAGGGATCGACCCGA-TCCCCTCTGCGTGCTGTCA
* * *
16735634 ATCCTGCTACCGCAACCCTCGGTTCGATCTAAT
128 ATCCTGCTGCCGCAACCCTCGGTCCGATCTGAT
* * *
16735667 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGTGTGC-GGCCGCTCAA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCAAGCCGCTCAA
* * * **
16735731 CCGACT-GGAGAGGCAGAATGCGCAAGCTAGGGATTGACCCGATCCTCCTCTACGTGCTGTCGGT
66 CCGACTCGGAGAGGCAGAATGCACAAGCTAGGGATCGACCCGATCC-CCTCTGCGTGCTGTCAAT
* * * *
16735795 CCTGCTTCCGCAACCCTTGGTCTAGTTC-GAT
130 CCTGCTGCCGCAACCCTCGGTC-CGATCTGAT
* *
16735826 CTTAGATTGGGAATGAATTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
16735851 CCTTAAAGTG
Statistics
Matches: 390, Mismatches: 88, Indels: 46
0.74 0.17 0.09
Matches are distributed among these distances:
157 6 0.02
158 123 0.32
159 247 0.63
160 14 0.04
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.22
Consensus pattern (160 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCAAGCCGCTCAA
CCGACTCGGAGAGGCAGAATGCACAAGCTAGGGATCGACCCGATCCCCTCTGCGTGCTGTCAATC
CTGCTGCCGCAACCCTCGGTCCGATCTGAT
Found at i:16736204 original size:26 final size:26
Alignment explanation
Indices: 16736163--16736215 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16736153 TGCTCAAACT
16736163 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* * *
16736189 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
16736215 C
1 C
16736216 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:16736411 original size:26 final size:26
Alignment explanation
Indices: 16736360--16736412 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
16736350 CCGGTCTAAT
*
16736360 CTTAGACTGGGAACGAACTCTATATG
1 CTTAGACTGGGAACGAACTCCATATG
* *
16736386 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAACGAACTCCATATG
16736412 C
1 C
16736413 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCATATG
Found at i:16737195 original size:525 final size:534
Alignment explanation
Indices: 16736512--16739015 Score: 1709
Period size: 549 Copynumber: 4.6 Consensus size: 534
16736502 CATGCTGTCA
* * * * *
16736512 ATCCAGTTGTCGCAACCCTTGTTTTGGTCCGATCTTAGACTGGGAATCAACTCCGTATGCCTAAG
1 ATCCTGTTGCCGCAACCCTTGGTCTGGTCCGATCTTAGACTGGGAATCAACTCCGTATGCATAAG
* ** * * *
16736577 TCATCCCACAAAATGAGCGTTCGGGCACTGACCCGACCGGAGAGGTGGAATACACAAGCCGGGGA
66 TCAACCCATGAAATGAGC-TTCGGGCACTGA-GCGACCGGAGATGTAGAATACACAAGCCGGGGA
* * ** * *
16736642 TCGGCCCG-GTCCCCCTGCGTATTGTCGATCCTGCTACCGCAACCCTCGGTCTGGTTTGATCTTA
129 TCGACCCGAG-CCCCCTACGTGCTGTCGATCCTGCTACCGTAACCCTCGGTCTGGTCTGATCTTA
16736706 GATTGGGAATGAACTTCGTATGCTTAGACTAGGGATGAACTCTGTATGCCTAAGTCAACCCATGA
193 GATTGGGAATGAACTTCGTATGCTTAGACT-GGGATGAACTCTGTATGCCTAAGTCAACCCATGA
* * **
16736771 AACGAGCGTGTGGGCTGTTCAGCTGGCCTATGAGGCCGAC-GAGAGAGACAAAATACGTAAGCTG
257 AACGAGAGTGTGGGCTGCTCAGCTGGCCTATGAGGCCGACTG-GAGAGACAAAATACACAAGCTG
* * *
16736835 AGGATC-GATTCATTCCC-CCTGCGTGCTGCCGATCTTGCTGCTGGTCCTAC-T-ACCGT-AACC
321 AGGATCAGATT-ATTCCCTCCTGCGTGCTACCGATCTTACTGCTGGTCCTACTTAACCCTCAACC
*
16736895 -AT-TGAT-TTGGTCT-G-AT-CT-T-TGACT-A-GGAATGAACTCCGTATGCCCAAGCCAACCC
385 GATCTGATCTTGGACTGGAATACTCTATGACTAATGGAATGAACTCCGTATGCCCAAGCCAACCC
* * *
16736950 ACGAAACAAGCATGCAGGTGCTAAGCCAATCGAAGAGGCAGAATGCACAAGCCGGGGACCGGCTC
450 ACCAAACAAGCATACAGGTGCTAAGCCAATCGAAGAAGCAGAATGCACAAGCCGGGGACCGGCTC
* *
16737015 GATCCCTCCCTACGCACTGTTG
515 GAT-CC-CCCTACGCACTATCG
*
16737037 ATCCTGTTGCCGCAACCCTTGGTCTGGTCCGATCTTAGACTGGGAATCAACTTCGTATGCATAAG
1 ATCCTGTTGCCGCAACCCTTGGTCTGGTCCGATCTTAGACTGGGAATCAACTCCGTATGCATAAG
* * **
16737102 TCAACCCATGAAATGAGCATTCGGGCACTGAGTCGGCTC-GAGATGTAGAATACGCAAGCCAAGG
66 TCAACCCATGAAATGAGC-TTCGGGCACTGAG-CGAC-CGGAGATGTAGAATACACAAGCCGGGG
*
16737166 ATCGACCCGAGCCCCCTACGTGCTGTCGATCCTGCTGCCGTAACCCTCGGTCTGGTCTGATCTTA
128 ATCGACCCGAGCCCCCTACGTGCTGTCGATCCTGCTACCGTAACCCTCGGTCTGGTCTGATCTTA
* *
16737231 GACTGGGAATGAACTCCGTATGCTTAGACTGGGATGAACTCTGTATGCCTAAGTCAACCCATGAA
193 GATTGGGAATGAACTTCGTATGCTTAGACTGGGATGAACTCTGTATGCCTAAGTCAACCCATGAA
* * *
16737296 AC-A-AGTGTGCGGCTGCTCAGCTGGCCTATGAGGCCAACTGGAGAGACAGAATGCACAAGCTGA
258 ACGAGAGTGTG-GGCTGCTCAGCTGGCCTATGAGGCCGACTGGAGAGACAAAATACACAAGCTGA
* * *
16737359 GGATCAGCTTATTCCCTCCTGCGTGCTACCGATCTTATTGCTGGTCCTACTGTTGCAACCCTCGG
322 GGATCAGATTATTCCCTCCTGCGTGCTACCGATCTTACTGCTGGTCCTAC--TT--AACCCTC-A
* * *
16737424 TCCGATCTGATCTTTGACTGGGAATGAACTCCGTATGATTAGACATGGAATGAACTCCGTATGCC
382 ACCGATCTGATCTTGGACT-GGAAT--ACT-C-TATGACT--A-ATGGAATGAACTCCGTATGCC
* * * ** * * *
16737489 CAAGCCAACCCACCAAACGAGCGTACGGGTGCTAAGCCGGTCGAAGAAGTAGAATGCATAAGCTG
439 CAAGCCAACCCACCAAACAAGCATACAGGTGCTAAGCCAATCGAAGAAGCAGAATGCACAAGCCG
* * *
16737554 GGGATCGGCTTGATCCCCCTACGTACTATCG
504 GGGACCGGCTCGATCCCCCTACGCACTATCG
* * * * *
16737585 ATCCTGTTGCCGTAACCCTCGGTCTGATCCGATCTTAGACTAGGAATCAACTCCATATG-ACTAA
1 ATCCTGTTGCCGCAACCCTTGGTCTGGTCCGATCTTAGACTGGGAATCAACTCCGTATGCA-TAA
* * * * **
16737649 GTTAACCCATGAAACGAACGCTT-GGGCACTGAGCAGACCGGAGATGCAGAATGCACAAGTTGGG
65 GTCAACCCATGAAATG-A-GCTTCGGGCACTGAGC-GACCGGAGATGTAGAATACACAAGCCGGG
** * * ** * * * *
16737713 GATCGATTCGATCCCCTTACGTGCTACCGATCCTGCCATCGTAATCCTC-GTTTCGGTCTGATCT
127 GATCGACCCGAGCCCCCTACGTGCTGTCGATCCTGCTACCGTAACCCTCGGTCT-GGTCTGATCT
* *
16737777 TAGATTGGGAATGAAC-TCTGTATGCTTATACTGGGGATGAACTCCGTATGCCTAAGTCAACCCA
191 TAGATTGGGAATGAACTTC-GTATGCTTAGACT-GGGATGAACTCTGTATGCCTAAGTCAACCCA
* ** * * * * * **
16737841 TGAAACGAGTGTAAGGGC-GCTCAACCGGCCTATGAGGCCGACTGGAAAGATAGAATATGCAAG-
254 TGAAACGAGAGTGTGGGCTGCTCAGCTGGCCTATGAGGCCGACTGGAGAGACAAAATACACAAGC
* ** * * *** * * * *
16737904 TCGAGGATCAGCTCGTTCCCCCCTGTGTGCTGTTGATCCTGCTGTTGGTCCTGCTGCTGCAACCC
319 T-GAGGATCAGATTATTCCCTCCTGCGTGCTACCGATCTTACTGCTGGTCCTACT--T--AACCC
** * * *
16737969 TCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATG-CTTAGACATGGAATGAA-TACC-
379 TC-AACCGATCTGATCTTGGACT-GGAAT--ACT-C-TATGAC-T--A-ATGGAATGAACT-CCG
* * * ** * ** * * *
16738031 TATACCTAAGCCAACCCACGAAACGGGCGTATGGGTGCTCAGCCAGTCGAAGAGGCAGAATGCAC
433 TATGCCCAAGCCAACCCACCAAACAAGCATACAGGTGCTAAGCCAATCGAAGAAGCAGAATGCAC
* * * * ** * *
16738096 AAGCTGGGGATCAGCTCGATCCCCCTTATGTGCTGTTG
498 AAGCCGGGGACCGGCTCGATCCCCC-TACGCACTATCG
** *
16738134 ATCCTACTGCCACAACCCTCGATCTGATCTGATCTTAGACTGGAAATGAACTCTGTATTCTTAGA
1 ATCCTGTTGCCGCAA-CC-C--T-TG----G----T---CTGG---T---C-C-G-A-TCTTAGA
* * * * * * *
16738199 CTAGGG-ATAAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCATTCGGGCATTAAGCTGGCC
40 CT-GGGAATCAACTCCGTATGCATAAGTCAACCCATGAAATGAGC-TTCGGGCACTGAGC-GACC
* * * ** * * * * * * * *
16738263 TGAAATGCAGAATACGTAAG-CTGGGATCGGCCCGATCCCCCTGCGTGCTGTAGATCCTACTGCT
102 GGAGATGTAGAATACACAAGCCGGGGATCGACCCGAGCCCCCTACGTGCTGTCGATCCTGCTACC
* ** **
16738327 GCAACCCTCGGTCTGGTCTGATCTTAGACCGGGAATGAACTTTATATGCTTAGACTGGGGATGAA
167 GTAACCCTCGGTCTGGTCTGATCTTAGATTGGGAATGAACTTCGTATGCTTAGACT-GGGATGAA
* * ** *
16738392 CTCTGTATGCCTAAGTCAACCTATGAAACGAGTGTACGGG-TGCTTAGCTGGCCTATGAGGCCGA
231 CTCTGTATGCCTAAGTCAACCCATGAAACGAGAGTGTGGGCTGCTCAGCTGGCCTATGAGGCCGA
** * * * * * ** * * *
16738456 CCAGAGAGACAGAATGCACAAGCCGAAGATC-GATCATTCCCTCCTATGAGCTACCAATCTTGCT
296 CTGGAGAGACAAAATACACAAGCTGAGGATCAGATTATTCCCTCCTGCGTGCTACCGATCTTACT
* * * * *
16738520 GCTGGTCCTGCTATCGTAACCCTCGATCCGGTCTGATCTTTGACTGAGAATGAACCCCGTATG-C
361 GCTGGT-C--CTA-CTTAACCCTC-AACCGATCTGATCTTGGACTG-GAAT--A-CTC-TATGAC
* * * * **
16738584 TTAGACATGGAATGAACCCCGTATGCCCAAGCCAACCCACGAAATGAA-CGTACAGGCACTGAA-
416 -T--A-ATGGAATGAACTCCGTATGCCCAAGCCAACCCACCAAA-CAAGCATACAGGTGCT-AAG
* * * * * * * ** * ** *
16738647 TCAGTCGGAGAGGTAAAATGCATAAGTTGGGGATCGGCTTCG-TCCCCCCTACGTGCTGTCG
475 CCAATCGAAGAAGCAGAATGCACAAGCCGGGGACCGGC-TCGAT-CCCCCTACGCACTATCG
* * * * * * * *
16738708 ATCTTGTTGCTGCAACCATTGGTCCGATCCGATCTTAGACTGGGAATCAACTCCATATGCCTAAC
1 ATCCTGTTGCCGCAACCCTTGGTCTGGTCCGATCTTAGACTGGGAATCAACTCCGTATGCATAAG
* * * * * * * * * *
16738773 TCAACCCACGAAACGAGCGTTCGGGCATTGAACCGACCGAAGATGCAAAATGCACAAGTCGAGGA
66 TCAACCCATGAAATGAGC-TTCGGGCACTG-AGCGACCGGAGATGTAGAATACACAAGCCGGGGA
**** * ** * ** * *
16738838 TCGGTATGATCCCCCTACGTGCTACCGATCCTGCTACCGTAACCTTCAATCCGATCTGATCTTAG
129 TCGACCCGAGCCCCCTACGTGCTGTCGATCCTGCTACCGTAACCCTCGGTCTGGTCTGATCTTAG
* * * * *
16738903 ACTGGGAATGAACTCCGTATGCTTATACTAGGGATGAACTCTATAAGCCTAAGTCAACCCATGAA
194 ATTGGGAATGAACTTCGTATGCTTAGACT-GGGATGAACTCTGTATGCCTAAGTCAACCCATGAA
* * * * * *
16738968 ATGAGCGTGCGGGC-GCTCAGCTGACCTATAAGGCCGACTGGAAAGACA
258 ACGAGAGTGTGGGCTGCTCAGCTGGCCTATGAGGCCGACTGGAGAGACA
16739016 GAATGTGCAA
Statistics
Matches: 1587, Mismatches: 293, Indels: 174
0.77 0.14 0.08
Matches are distributed among these distances:
522 5 0.00
523 57 0.04
524 71 0.04
525 193 0.12
526 2 0.00
527 1 0.00
530 4 0.00
532 2 0.00
533 2 0.00
534 4 0.00
535 5 0.00
537 1 0.00
538 2 0.00
541 2 0.00
544 1 0.00
545 4 0.00
547 11 0.01
548 335 0.21
549 350 0.22
550 94 0.06
551 5 0.00
552 1 0.00
553 1 0.00
554 1 0.00
555 1 0.00
558 3 0.00
561 1 0.00
562 1 0.00
565 4 0.00
568 1 0.00
569 2 0.00
570 1 0.00
571 1 0.00
572 2 0.00
573 89 0.06
574 245 0.15
575 77 0.05
576 4 0.00
577 1 0.00
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.24
Consensus pattern (534 bp):
ATCCTGTTGCCGCAACCCTTGGTCTGGTCCGATCTTAGACTGGGAATCAACTCCGTATGCATAAG
TCAACCCATGAAATGAGCTTCGGGCACTGAGCGACCGGAGATGTAGAATACACAAGCCGGGGATC
GACCCGAGCCCCCTACGTGCTGTCGATCCTGCTACCGTAACCCTCGGTCTGGTCTGATCTTAGAT
TGGGAATGAACTTCGTATGCTTAGACTGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACG
AGAGTGTGGGCTGCTCAGCTGGCCTATGAGGCCGACTGGAGAGACAAAATACACAAGCTGAGGAT
CAGATTATTCCCTCCTGCGTGCTACCGATCTTACTGCTGGTCCTACTTAACCCTCAACCGATCTG
ATCTTGGACTGGAATACTCTATGACTAATGGAATGAACTCCGTATGCCCAAGCCAACCCACCAAA
CAAGCATACAGGTGCTAAGCCAATCGAAGAAGCAGAATGCACAAGCCGGGGACCGGCTCGATCCC
CCTACGCACTATCG
Found at i:16737276 original size:25 final size:26
Alignment explanation
Indices: 16737227--16737278 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
16737217 CTGGTCTGAT
16737227 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16737253 CTTAGACTGGG-ATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16737278 C
1 C
16737279 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 14 0.56
26 11 0.44
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16737804 original size:26 final size:26
Alignment explanation
Indices: 16737775--16737827 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16737765 TCGGTCTGAT
* *
16737775 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
16737801 CTTATACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16737827 C
1 C
16737828 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16738173 original size:549 final size:551
Alignment explanation
Indices: 16736920--16739314 Score: 2164
Period size: 549 Copynumber: 4.3 Consensus size: 551
16736910 TCTTTGACTA
* * * * *
16736920 GGAATGAACT-CCGTATGCCCAAGCCAACCCACGAAACAAGCATGCAGGTGCTAAGCCAATCGAA
1 GGAATGAA-TACCGTATGCCCAAGCCAACCCACGAAACGAGCGTACGGGTGCTAAGCCAGTCGAA
* * * *
16736984 GAGGCAGAATGCACAAGCCGGGGACCGGCTCGATCCCTCCCTACGCACTGTTGATCCTGTTGCCG
65 GAGGCAGAATGCACAAGCTGGGGATCGGCTCGATCCC-CCCTACGTACTGTCGATCCTGTTGCCG
* * * *
16737049 CAACCCTTGGTCTGGTCCGATCTTAGACTGGGAATCAACTTCGTATG-CATAAGTCAACCCATGA
129 CAACCCTCGGTCTGATCCGATCTTAGACTGGGAATCAACTCCATATGAC-TAAGTCAACCCATGA
* * * * *
16737113 AATG-A-GCATTCGGGCACTGAGTCGGCTC-GAGATGTAGAATACGCAAGCCAAGGATCGACCCG
193 AACGAACGCATTCGGGCACTGAG-CGAC-CGGAGATGCAGAATACACAAGCCGAGGATCGACCCG
* ** **
16737175 AGCCCCCTACGTGCTGTCGATCCTGCTGCCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAA
256 ATCCCCCTACGTGCTACCGATCCTGCCACCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAA
*
16737240 TGAACTCCGTATGCTTAGACT-GGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACAAGTGT
321 TGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGTGT
* * *
16737304 GC-GGCTGCTCAGCTGGCCTATGAGGCCAACTGGAGAGACAGAATGCACAAG-CTGAGGATCAGC
386 ACGGGC-GCTCAGCTGGCCTATGAGGCCGACTGGAAAGACAGAATGCACAAGTC-GAGGATCAGC
* * * ** * * * *
16737367 TTATTCCCTCCTGCGTGCTACCGATCTTATTGCTGGTCCTACTGTTGCAACCCTCGGTCCGATCT
449 TCATTCCCTCCTACGTGCTACCGATCCTGCTGCTGGTCCTGCTGTCGCAACCCTCGATCCGGTCT
* * *
16737432 GATCTTTGACTGGGAATGAACTCCGTATGATTAGACAT
514 GATCTTAGACTGGGAATGAACTCCATATGCTTAGACAT
* *
16737470 GGAATGAACT-CCGTATGCCCAAGCCAACCCACCAAACGAGCGTACGGGTGCTAAGCCGGTCGAA
1 GGAATGAA-TACCGTATGCCCAAGCCAACCCACGAAACGAGCGTACGGGTGCTAAGCCAGTCGAA
* * * * * *
16737534 GAAGTAGAATGCATAAGCTGGGGATCGGCTTGAT-CCCCCTACGTACTATCGATCCTGTTGCCGT
65 GAGGCAGAATGCACAAGCTGGGGATCGGCTCGATCCCCCCTACGTACTGTCGATCCTGTTGCCGC
* *
16737598 AACCCTCGGTCTGATCCGATCTTAGACTAGGAATCAACTCCATATGACTAAGTTAACCCATGAAA
130 AACCCTCGGTCTGATCCGATCTTAGACTGGGAATCAACTCCATATGACTAAGTCAACCCATGAAA
* ** * **
16737663 CGAACGC-TT-GGGCACTGAGCAGACCGGAGATGCAGAATGCACAAGTTGGGGATCGATTCGATC
195 CGAACGCATTCGGGCACTGAGC-GACCGGAGATGCAGAATACACAAGCCGAGGATCGACCCGATC
* * * * *
16737726 CCCTTACGTGCTACCGATCCTGCCATCGTAATCCTC-GTTTCGGTCTGATCTTAGATTGGGAATG
259 CCCCTACGTGCTACCGATCCTGCCACCGTAACCCTCGGTCT-GGTCTGATCTTAGACTGGGAATG
* * * *
16737790 AACTCTGTATGCTTATACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTAA
323 AACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGTGTAC
* * * *** *
16737855 GGGCGCTCAACCGGCCTATGAGGCCGACTGGAAAGATAGAATATGCAAGTCGAGGATCAGCTCGT
388 GGGCGCTCAGCTGGCCTATGAGGCCGACTGGAAAGACAGAATGCACAAGTCGAGGATCAGCTCAT
* ** *** * * *
16737920 TCCCCCCTGTGTGCTGTTGATCCTGCTGTTGGTCCTGCTG-CTGCAACCCTCGGTCTGGTCTGAT
453 TCCCTCCTACGTGCTACCGATCCTGCTGCTGGTCCTGCTGTC-GCAACCCTCGATCCGGTCTGAT
16737984 CTTAGACTGGGAATGAACTCCATATGCTTAGACAT
517 CTTAGACTGGGAATGAACTCCATATGCTTAGACAT
* * * * *
16738019 GGAATGAATACC-TATACCTAAGCCAACCCACGAAACGGGCGTATGGGTGCTCAGCCAGTCGAAG
1 GGAATGAATACCGTATGCCCAAGCCAACCCACGAAACGAGCGTACGGGTGCTAAGCCAGTCGAAG
* * * * * ** *
16738083 AGGCAGAATGCACAAGCTGGGGATCAGCTCGATCCCCCTTATGTGCTGTTGATCCTACTGCCACA
66 AGGCAGAATGCACAAGCTGGGGATCGGCTCGATCCCCCCTACGTACTGTCGATCCTGTTGCCGCA
* *
16738148 ACCCTCGATCTGATCTGATCTTAGACTGGAAATGAACTCTGTATTCTTAGACTAGGGATAAACTC
131 ACCCTCGGTCTGATCCGATCTTAGACTGG----G-A------A-TC--A-AC------T---C-C
* * * * * * * * *
16738213 TGTATGCCTAAGTCAACCCACGAAATG-A-GCATTCGGGCATTAAGCTGGCCTGAAATGCAGAAT
171 -ATATGACTAAGTCAACCCATGAAACGAACGCATTCGGGCACTGAGC-GACCGGAGATGCAGAAT
** * * * *** * ** * *
16738276 ACGTAAGCTG-GGATCGGCCCGATCCCCCTGCGTGCTGTAGATCCTACTGCTGCAACCCTCGGTC
234 ACACAAGCCGAGGATCGACCCGATCCCCCTACGTGCTACCGATCCTGCCACCGTAACCCTCGGTC
* ***
16738340 TGGTCTGATCTTAGACCGGGAATGAACTTTATATGCTTAGACTGGGGATGAACTCTGTATGCCTA
299 TGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTA
* * * ** *
16738405 AGTCAACCTATGAAACGAGTGTACGGGTGCTTAGCTGGCCTATGAGGCCGACCAGAGAGACAGAA
364 AGTCAACCCATGAAACGAGTGTACGGGCGCTCAGCTGGCCTATGAGGCCGACTGGAAAGACAGAA
* * * * * * * *
16738470 TGCACAAGCCGAAGATC-GATCATTCCCTCCTATGAGCTACCAATCTTGCTGCTGGTCCTGCTAT
429 TGCACAAGTCGAGGATCAGCTCATTCCCTCCTACGTGCTACCGATCCTGCTGCTGGTCCTGCTGT
* * * * *
16738534 CGTAACCCTCGATCCGGTCTGATCTTTGACTGAGAATGAACCCCGTATGCTTAGACAT
494 CGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACAT
** * * * ** * *
16738592 GGAATGAACCCCGTATGCCCAAGCCAACCCACGAAATGAACGTACAGGCACTGAA-TCAGTCGGA
1 GGAATGAATACCGTATGCCCAAGCCAACCCACGAAACGAGCGTACGGGTGCT-AAGCCAGTCGAA
* * * * * * *
16738656 GAGGTAAAATGCATAAGTTGGGGATCGGCTTCG-TCCCCCCTACGTGCTGTCGATCTTGTTGCTG
65 GAGGCAGAATGCACAAGCTGGGGATCGGC-TCGATCCCCCCTACGTACTGTCGATCCTGTTGCCG
* * * * * *
16738720 CAACCATTGGTCCGATCCGATCTTAGACTGGGAATCAACTCCATATGCCTAACTCAACCCACGAA
129 CAACCCTCGGTCTGATCCGATCTTAGACTGGGAATCAACTCCATATGACTAAGTCAACCCATGAA
* * * * * * * ****
16738785 ACG-A-GCGTTCGGGCATTGAACCGACCGAAGATGCAAAATGCACAAGTCGAGGATCGGTATGAT
194 ACGAACGCATTCGGGCACTG-AGCGACCGGAGATGCAGAATACACAAGCCGAGGATCGACCCGAT
* * ** * *
16738848 CCCCCTACGTGCTACCGATCCTGCTACCGTAACCTTCAATCCGATCTGATCTTAGACTGGGAATG
258 CCCCCTACGTGCTACCGATCCTGCCACCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATG
* * * * * * *
16738913 AACTCCGTATGCTTATACTAGGGATGAACTCTATAAGCCTAAGTCAACCCATGAAATGAGCGTGC
323 AACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGTGTAC
* * ** *
16738978 GGGCGCTCAGCTGACCTATAAGGCCGACTGGAAAGACAGAATGTGCAAGTC-AGGGAT-TGACTC
388 GGGCGCTCAGCTGGCCTATGAGGCCGACTGGAAAGACAGAATGCACAAGTCGA-GGATCAG-CTC
* * * * ** * * *
16739041 ATTCCCTCCTACATTCTGCTGATCCTGCTATTGGTCCTGCTGTCGTAACCCTCGATCCAGTCCGA
451 ATTCCCTCCTACGTGCTACCGATCCTGCTGCTGGTCCTGCTGTCGCAACCCTCGATCCGGTCTGA
16739106 TCTTAGACTGGGAATGAACTCCATATGCTTAGACAT
516 TCTTAGACTGGGAATGAACTCCATATGCTTAGACAT
* * * * * * * *
16739142 GGAATGAATACC-TATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGCTCAGTC-GATCGGA
1 GGAATGAATACCGTATGCCCAAGCCAACCCACGAAACGAGCGTACGGGTGCTAAGCCAG-TCGAA
* * * * * * * * * * * *
16739205 GAGGCAGATTGCACAAGCTAGGGATCGACCCAATCCCTCATAAGTGCTGCCAATCCTGCT-CCTG
65 GAGGCAGAATGCACAAGCTGGGGATCGGCTCGATCCCCCCTACGTACTGTCGATCCTGTTGCC-G
* * * * *
16739269 CAATCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTATAT
129 CAACCCTCGGTCTGATCCGATCTTAGACTGGGAATCAACTCCATAT
16739315 TCATAGACTG
Statistics
Matches: 1481, Mismatches: 310, Indels: 109
0.78 0.16 0.06
Matches are distributed among these distances:
547 5 0.00
548 321 0.22
549 520 0.35
550 188 0.13
553 2 0.00
554 1 0.00
559 2 0.00
560 2 0.00
561 2 0.00
562 2 0.00
563 2 0.00
564 2 0.00
569 1 0.00
570 2 0.00
573 97 0.07
574 275 0.19
575 57 0.04
ACGTcount: A:0.26, C:0.27, G:0.24, T:0.23
Consensus pattern (551 bp):
GGAATGAATACCGTATGCCCAAGCCAACCCACGAAACGAGCGTACGGGTGCTAAGCCAGTCGAAG
AGGCAGAATGCACAAGCTGGGGATCGGCTCGATCCCCCCTACGTACTGTCGATCCTGTTGCCGCA
ACCCTCGGTCTGATCCGATCTTAGACTGGGAATCAACTCCATATGACTAAGTCAACCCATGAAAC
GAACGCATTCGGGCACTGAGCGACCGGAGATGCAGAATACACAAGCCGAGGATCGACCCGATCCC
CCTACGTGCTACCGATCCTGCCACCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAAC
TCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGTGTACGGG
CGCTCAGCTGGCCTATGAGGCCGACTGGAAAGACAGAATGCACAAGTCGAGGATCAGCTCATTCC
CTCCTACGTGCTACCGATCCTGCTGCTGGTCCTGCTGTCGCAACCCTCGATCCGGTCTGATCTTA
GACTGGGAATGAACTCCATATGCTTAGACAT
Found at i:16738195 original size:26 final size:26
Alignment explanation
Indices: 16738166--16738217 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16738156 TCTGATCTGA
*
16738166 TCTTAGACT-GGAAATGAACTCTGTAT
1 TCTTAGACTAGG-AATAAACTCTGTAT
*
16738192 TCTTAGACTAGGGATAAACTCTGTAT
1 TCTTAGACTAGGAATAAACTCTGTAT
16738218 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35
Consensus pattern (26 bp):
TCTTAGACTAGGAATAAACTCTGTAT
Found at i:16738400 original size:26 final size:26
Alignment explanation
Indices: 16738349--16738401 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16738339 CTGGTCTGAT
*
16738349 CTTAGACCGGGAATGAACTTTATATG
1 CTTAGACCGGGAATGAACTCTATATG
* * *
16738375 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACCGGGAATGAACTCTATATG
16738401 C
1 C
16738402 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACCGGGAATGAACTCTATATG
Found at i:16738443 original size:182 final size:184
Alignment explanation
Indices: 16737943--16738445 Score: 554
Period size: 182 Copynumber: 2.7 Consensus size: 184
16737933 CTGTTGATCC
* * *
16737943 TGCTGTTGGTCCTGCTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATA
1 TGCTGTTGATCCTACTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTATA
* * * * * * *
16738008 TGCTTAGACATGGAATGAA-TAC-CTATACCTAAGCCAACCCACGAAACGGGCGTATGGGTGCTC
66 TGCTTAGAC-TGGGATGAACT-CTGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTT
** * * * *
16738071 AGCCAGTC-GAAGAGGCAGAATGCACAAGCTGGGGATCAGCTCGATCCCCCTTATG
129 AGCTGGCCTGAAGAGGCAGAATACACAAGCTGGGGATCAGCCCGATCCCCCTTACG
** * * * *
16738126 TGCTGTTGATCCTACTGCCACAACCCTCGATCTGATCTGATCTTAGACTGGAAATGAACTCTGTA
1 TGCTGTTGATCCTACTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTATA
* * * * *
16738191 TTCTTAGACTAGGGATAAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCATTC-GG-GCATT
66 TGCTTAGACT-GGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGC-TT
* ** * *
16738254 AAGCTGGCCTGAA-ATGCAGAATACGTAAGCT-GGGATCGGCCCGATCCCCC-TGCG
129 -AGCTGGCCTGAAGAGGCAGAATACACAAGCTGGGGATCAGCCCGATCCCCCTTACG
* * *
16738308 TGCTGTAGATCCTACTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACCGGGAATGAACTTTATA
1 TGCTGTTGATCCTACTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTATA
* * *
16738373 TGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCTATGAAACGAGTGTACGGGTGCTTA
66 TGCTTAGACT-GGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTTA
16738438 GCTGGCCT
130 GCTGGCCT
16738446 ATGAGGCCGA
Statistics
Matches: 262, Mismatches: 50, Indels: 17
0.80 0.15 0.05
Matches are distributed among these distances:
182 117 0.45
183 95 0.36
184 47 0.18
185 3 0.01
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (184 bp):
TGCTGTTGATCCTACTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTATA
TGCTTAGACTGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTTAG
CTGGCCTGAAGAGGCAGAATACACAAGCTGGGGATCAGCCCGATCCCCCTTACG
Found at i:16739551 original size:26 final size:26
Alignment explanation
Indices: 16739501--16739551 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
16739491 TAGACTGATC
* * **
16739501 TTAGACTTTGAATGAACTCTGTATGT
1 TTAGACATGGAATGAACTCCATATGT
16739527 TTAGACATGGAATGAACTCCATATG
1 TTAGACATGGAATGAACTCCATATG
16739552 CCTAAGCCAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.31, C:0.14, G:0.20, T:0.35
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCATATGT
Found at i:16740222 original size:26 final size:26
Alignment explanation
Indices: 16740186--16740238 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16740176 CTAGTCTGAT
* *
16740186 CTTAGATTGGGAATGAATTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16740212 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16740238 C
1 C
16740239 CTAAGTCAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16740946 original size:26 final size:26
Alignment explanation
Indices: 16740908--16740960 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16740898 GGCTCAAACT
16740908 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16740934 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16740960 C
1 C
16740961 CTCAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16741476 original size:26 final size:26
Alignment explanation
Indices: 16741447--16741499 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16741437 TCGATCTGAT
16741447 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCTGTATG
16741473 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCTGTATG
16741499 C
1 C
16741500 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTGTATG
Found at i:16742671 original size:158 final size:156
Alignment explanation
Indices: 16742169--16742671 Score: 419
Period size: 159 Copynumber: 3.2 Consensus size: 156
16742159 ACTCCATATA
* *
16742169 CTTAGACATGGAATGAACTCCGTATGCCTACACCAACCCACGAAACGAGC-GTCTGGGTGCTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTACTCCAACCCATGAAACGAGCGGTC-GGGTGCTCAG
* * * * ** * * *
16742233 CCGA-TCGGAGAGGTAGAATGCGTAAGTCGGAGACCAGCCCGGTCTCCCCCTACGAGCTGTCGAT
65 CCGACT-GGAGAGGCAGAATACGTAAGCCGGGGA-TGGCCCGATC-CCCCTTACGTGCTGTCGAT
* * * *
16742297 CTTGCT-AT-CGTAACCCTCGATTCGGTCTGAT
127 CTTGCTGCTAC--AACCCTCG-GTCCGTCCGAT
* * * * * * *
16742328 CTTAGAC-TGGGAATAAACTCCGTATGCCTAAGT-CAACCCATGAAACCAGCGTTCAGGCGCTGA
1 CTTAGACAT-GGAATGAACTCCGTATGCCT-ACTCCAACCCATGAAACGAGCGGTCGGGTGCTCA
* * * * *
16742391 GCCGACCGGAGAGGCATAATACGCAAGCCGAGGATGAGTCCGATCCCCCTCTACGTGCTGTC-AG
64 GCCGACTGGAGAGGCAGAATACGTAAGCCGGGGATG-GCCCGATCCCCCT-TACGTGCTGTCGA-
** * * * * **
16742455 TCCCGCTGCCATAACCCTCGGTCCGACTGGGG
126 TCTTGCTGCTACAACCCTCGGTCCGTC-CGAT
* * * *
16742487 CTTAGACATGGAATGAACTCCCTATGCCTACTCCAACCCATAAAACGGGCGGACGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTACTCCAACCCATGAAACGAGCGGTCGGGTGCTCAGC
* * *
16742552 CGACTAGAGAGGCAGAATATGTAAGCCGGGGATTGGCCCGATCCCCCTTGCGTGCTGTCGATCTT
66 CGACTGGAGAGGCAGAATACGTAAGCCGGGGA-TGGCCCGATCCCCCTTACGTGCTGTCGATCTT
16742617 GCTGCTACAACCCTCGGTCCCGTCCGAT
130 GCTGCTACAACCCTCGGT-CCGTCCGAT
*
16742645 CTTAGAC-TGGGAATGAACTCCATATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
16742672 TTAGACTAGG
Statistics
Matches: 266, Mismatches: 62, Indels: 33
0.74 0.17 0.09
Matches are distributed among these distances:
157 1 0.00
158 65 0.24
159 194 0.73
160 6 0.02
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.20
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTACTCCAACCCATGAAACGAGCGGTCGGGTGCTCAGC
CGACTGGAGAGGCAGAATACGTAAGCCGGGGATGGCCCGATCCCCCTTACGTGCTGTCGATCTTG
CTGCTACAACCCTCGGTCCGTCCGAT
Found at i:16742731 original size:698 final size:693
Alignment explanation
Indices: 16740934--16742971 Score: 2032
Period size: 696 Copynumber: 2.9 Consensus size: 693
16740924 ACTCCGTATG
* * ** *
16740934 CTTAGACAT-GGAATGAACTCCGTATGCCTCAGCCAACCCATGAAACAAATGTGT-GGGCGCTCA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGT-TCGGGCGCTAA
* * * * *
16740997 ATCGATCGGAGAGGCAGATTTCGCAAGCTGGGGATCGGCCCGGTCCCCCTCTATGTGCTATCGGT
64 ACCGACCGGAGAGGCATAATTCGCAAGCTGGGGAT-GG-CCGGTCCCCCTCTACGTGCTATCGGT
** * * *
16741062 CATGCTGCCATAACCCTCGGTTCGACTGGGGCTTAGTCATGGAATGAACTCCGTATGCCTAAGCC
127 CCCGCTGCCATAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAACC
* * * * * *
16741127 AACCCACGAAACGGGCGTGTGGGCACTCAGCTGACCGGAGAGGTAGAAT-TCGTAAGCCAGGAAT
192 AACCCACGAAACGGGCGTGCGGGCACTCAGCCGACTGGAGAGGCAGAATAT-GTAAGCCGGGGAT
* * * * ** *
16741191 CAGCCCGATCCCCCTTGCGTGTTGTCGATCCTACTGTCGCAACCCTCGATCTGGTCTGATCTTAG
256 CGGCCCGATCCCCCTTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCGGTCCCGTCCGATCTTAG
* ** *
16741256 ACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCATTTGCCTAAGTCAACCCACGAA
321 ACTGGGAATGAACTCTATATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAA
* * * * * * * * * * * *
16741321 ACGAGCGTCCGGGTGCTCAACCGGCCGGAGAGGTAGAATGCGTAAGCTGAGGATCGACTCGGTCC
386 ATGAGCGTGCGGGCGCTCAACCGACCAGAAAGGTAGAATACGAAAGCAGAGGATCAACCCGATCC
** ** * * * * **
16741386 CCCCTGGGTGCTACCGATCCTACTGCTGATCCTGTTACTGTAACCCTCAGTTCGATCTGATCTTA
451 CCCCTACGTGCTACCGATCCTACTGCTGATCCTACTACTGCAAACCTCAGTCCAATCCAATCTTA
** * *
16741451 GACTGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAA
516 GACTGGGAATGAACTCCATATACTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAA
* * * * *
16741516 AATGAGCGTGTGGGCGCTCAACCGGTCGGAGAGGCAAAATGCACAAGTCAGAGATCGGCCCGGTC
581 AACGAGCGTCTGGGCGCTCAACCGATCGGAGAGGCAAAATGCACAAGTCAGAGACCAGCCCGGTC
* * * *
16741581 CCTCTACGTGCTATCAATCCTGTTGCTACAACCCTCCCTGCGGTCCGGT
646 CCCCTACGAGCTATCAATCC-GTTGCTACAACCCTCCATGCGGTCCGAT
* * * *
16741630 CATAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGCACTAAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTTCGGGCGCTAAAC
* * * * * *
16741695 TGGCTGGAGAGGCATAATTCGGAAGCTGGGGATTGGCTTGGTCCCCCTCTACGTGCTACCGGTCC
66 CGACCGGAGAGGCATAATTCGCAAGCTGGGGA-TGGC-CGGTCCCCCTCTACGTGCTATCGGTCC
* * * * *
16741760 CACTGCCACAACCCTTGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAACCAA
129 CGCTGCCATAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAACCAA
* * * * * * * *
16741825 CCAACGAAACGGGCGTGCGGGCACTCAGCCGATTGGAGAGGCAAAATACGGAAGTCGAGGATCGA
194 CCCACGAAACGGGCGTGCGGGCACTCAGCCGACTGGAGAGGCAGAATATGTAAGCCGGGGATCGG
* * * *
16741890 CCC-AGTCCCCCCTACGTGCTATCGATCCTGCTGTCGCAACCCTCAGTCCCGTCCGATCTTAGAC
259 CCCGA-TCCCCCTTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCGGTCCCGTCCGATCTTAGAC
* *
16741954 TGGGAATGAACTCTATATGCTTAGACTGGGGATGAATTTTGTATGCCTAAGTCAACCCACGAAAT
323 TGGGAATGAACTCTATATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAAT
* *
16742019 GAGTGTGTGGGCGCTCAACCGACCAGAAAGGTAGAATACGAAAGCCAG-GGATCAACCCGATCCC
388 GAGCGTGCGGGCGCTCAACCGACCAGAAAGGTAGAATACGAAAG-CAGAGGATCAACCCGATCCC
* * * * * * *
16742083 TCTTACGTGCTGCCGATCCTGCTGCTGGTCCTACTACTGCAAACCTCGGTCCAATCCAATCTTTG
452 CCCTACGTGCTACCGATCCTACTGCTGATCCTACTACTGCAAACCTCAGTCCAATCCAATCTTAG
*
16742148 ACTGGGAATGAACTCCATATACTTAGACATGGAATGAACTCCGTATGCCTACA-CCAACCCACGA
517 ACTGGGAATGAACTCCATATACTTAGACATGGAATGAACTCCGTATGCCTA-AGCCAACCCACAA
* * * * ** *
16742212 AACGAGCGTCTGGGTGCTCAGCCGATCGGAGAGGTAGAATGCGTAAGTCGGAGACCAGCCCGGTC
581 AACGAGCGTCTGGGCGCTCAACCGATCGGAGAGGCAAAATGCACAAGTCAGAGACCAGCCCGG--
* * * * *
16742277 TCCCCCTACGAGCTGTCGAT-C-TTGCTATCGTAACCCTCGATTCGGTCTGAT
644 TCCCCCTACGAGCTATCAATCCGTTGCTA-C--AACCCTCCATGCGGTCCGAT
* * * * *
16742328 CTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCATGAAACCAGCGTTCAGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTTCGGGCGCTAAAC
* * * * * *
16742393 CGACCGGAGAGGCATAATACGCAAGCCGAGGATGAGTCCGATCCCCCTCTACGTGCTGTCAGTCC
66 CGACCGGAGAGGCATAATTCGCAAGCTGGGGATG-G-CCGGTCCCCCTCTACGTGCTATCGGTCC
* **
16742458 CGCTGCCATAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTACTCCAA
129 CGCTGCCATAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAACCAA
** ** * *
16742523 CCCATAAAACGGGCG-GACGGGTGCTCAGCCGACTAGAGAGGCAGAATATGTAAGCCGGGGATTG
194 CCCACGAAACGGGCGTG-CGGGCACTCAGCCGACTGGAGAGGCAGAATATGTAAGCCGGGGATCG
* *
16742587 GCCCGATCCCCCTTGCGTGCTGTCGATCTTGCTG-CTACAACCCTCGGTCCCGTCCGATCTTAGA
258 GCCCGATCCCCCTTGCGTGCTGTCGATCCTGCTGTC-GCAACCCTCGGTCCCGTCCGATCTTAGA
* * *** *
16742651 CTGGGAATGAACTCCATATGCTTAGACTAGGGATGAACTCTGTATGCCTAAGTCAACCTTTGAAG
322 CTGGGAATGAACTCTATATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAA
* * * * * ** * *
16742716 TGAGCATGCGGGCGCTCATCCGACTGGAGAGGCTGATCGGAGAGGCAAAATGTGTAAGCCGAGGA
387 TGAGCGTGCGGGCGCTCAACCGAC--------C--A---GAAAGGTAGAATACGAAAGCAGAGGA
* ** * * * * * * *
16742781 TCAACCCGATCCCCCCTATGTGCTGTCGATCCTGCTGCTGGTCCTGCT-GTCGTAACCCTCGGTC
439 TCAACCCGATCCCCCCTACGTGCTACCGATCCTACTGCTGATCCTACTACT-GCAAACCTCAGTC
** ** * * * *
16742845 CGGTCTGATCTTAGACTGAGAATGAACTCCGTATGCTTAGAC-TAGGGATGAACTCCGTATGCCT
503 CAATCCAATCTTAGACTGGGAATGAACTCCATATACTTAGACAT-GGAATGAACTCCGTATGCCT
* * * ** * * *
16742909 AAGTCAACCCACGAAACGAGCGTGC-GGACGCTCAGTCGACCAGAGAGGCAAGATGCACAAGTC
567 AAGCCAACCCACAAAACGAGCGT-CTGGGCGCTCAACCGATCGGAGAGGCAAAATGCACAAGTC
16742972 GGGGATCGAA
Statistics
Matches: 1093, Mismatches: 213, Indels: 57
0.80 0.16 0.04
Matches are distributed among these distances:
695 10 0.01
696 521 0.48
697 9 0.01
698 372 0.34
699 2 0.00
706 1 0.00
708 1 0.00
710 5 0.00
711 171 0.16
712 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (693 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTTCGGGCGCTAAAC
CGACCGGAGAGGCATAATTCGCAAGCTGGGGATGGCCGGTCCCCCTCTACGTGCTATCGGTCCCG
CTGCCATAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAACCAACC
CACGAAACGGGCGTGCGGGCACTCAGCCGACTGGAGAGGCAGAATATGTAAGCCGGGGATCGGCC
CGATCCCCCTTGCGTGCTGTCGATCCTGCTGTCGCAACCCTCGGTCCCGTCCGATCTTAGACTGG
GAATGAACTCTATATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAG
CGTGCGGGCGCTCAACCGACCAGAAAGGTAGAATACGAAAGCAGAGGATCAACCCGATCCCCCCT
ACGTGCTACCGATCCTACTGCTGATCCTACTACTGCAAACCTCAGTCCAATCCAATCTTAGACTG
GGAATGAACTCCATATACTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGA
GCGTCTGGGCGCTCAACCGATCGGAGAGGCAAAATGCACAAGTCAGAGACCAGCCCGGTCCCCCT
ACGAGCTATCAATCCGTTGCTACAACCCTCCATGCGGTCCGAT
Found at i:16742883 original size:26 final size:26
Alignment explanation
Indices: 16742854--16742906 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16742844 CCGGTCTGAT
16742854 CTTAGACT-GAGAATGAACTCCGTATG
1 CTTAGACTAG-GAATGAACTCCGTATG
*
16742880 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16742906 C
1 C
16742907 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16743875 original size:26 final size:26
Alignment explanation
Indices: 16743846--16743898 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
16743836 CCGGTCTGAT
16743846 CTTAAACTAGGAATGAAC-TCTGTATG
1 CTTAAACTAGGAATGAACTTC-GTATG
* * *
16743872 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAAACTAGGAATGAACTTCGTATG
16743898 C
1 C
16743899 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAAACTAGGAATGAACTTCGTATG
Found at i:16744726 original size:26 final size:26
Alignment explanation
Indices: 16744675--16744727 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
16744665 CCGGTCTGAT
***
16744675 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16744701 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
16744727 C
1 C
16744728 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16745869 original size:26 final size:26
Alignment explanation
Indices: 16745832--16745883 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16745822 GCTTAAACTT
* *
16745832 TTAGACTGGGAATGAATTTCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
16745858 TTAGACAT-GGAATGAACTCCGTATGC
1 TTAGAC-TGGGAATGAACTCCGTATGC
16745884 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:16746055 original size:37 final size:37
Alignment explanation
Indices: 16746004--16746074 Score: 97
Period size: 37 Copynumber: 1.9 Consensus size: 37
16745994 CAACCCTCGA
* * * *
16746004 TCCCCCTTGTGTGCCGTTGATCCTGTTACTGGTCTGG
1 TCCCCCCTGCGTGCCGTCGATCCTGCTACTGGTCTGG
*
16746041 TCCCCCCTGCGTGCCGTCGATCCTGCTGCTGGTC
1 TCCCCCCTGCGTGCCGTCGATCCTGCTACTGGTC
16746075 CTGCTATCGC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 29 1.00
ACGTcount: A:0.04, C:0.37, G:0.27, T:0.32
Consensus pattern (37 bp):
TCCCCCCTGCGTGCCGTCGATCCTGCTACTGGTCTGG
Found at i:16746462 original size:26 final size:26
Alignment explanation
Indices: 16746421--16746473 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16746411 CCGGTCTAAT
16746421 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16746447 CTTAGACTAGGG-ATGAACTCCTTATG
1 CTTAGACT-GGGAATGAACTCCATATG
16746473 C
1 C
16746474 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16747717 original size:26 final size:26
Alignment explanation
Indices: 16747679--16747731 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16747669 TGCTCAAACT
*
16747679 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16747705 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16747731 C
1 C
16747732 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16748058 original size:26 final size:26
Alignment explanation
Indices: 16748022--16748074 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16748012 CCGGTCTGAT
16748022 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
16748048 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16748074 C
1 C
16748075 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16750334 original size:26 final size:26
Alignment explanation
Indices: 16750296--16750348 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16750286 GGCTCAAACT
*
16750296 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16750322 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16750348 C
1 C
16750349 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16750675 original size:26 final size:26
Alignment explanation
Indices: 16750639--16750691 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16750629 CCGGTCTGAT
16750639 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
16750665 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16750691 C
1 C
16750692 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16751890 original size:26 final size:26
Alignment explanation
Indices: 16751852--16751904 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16751842 CCGGTCCGAT
*
16751852 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16751878 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16751904 C
1 C
16751905 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16752067 original size:197 final size:195
Alignment explanation
Indices: 16751622--16752075 Score: 522
Period size: 196 Copynumber: 2.3 Consensus size: 195
16751612 GCGTGCTGCT
* * *
16751622 GATCCTACTATCGCAACCCTCGGTACGATCCGATCTTAGACTGGGAATGAACTCCGTATACTTAG
1 GATCCTACTACCGCAACCCTCGGTACG-TCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAG
* * * *
16751687 ACTACGGATAAACTCCGTATGCTTAAGTCAACCCAAGAAACGAGCGTGCAGGTGCTCAACCGATC
65 ACTACGGATAAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCAGGTGCTCAACAGACC
* * * *
16751752 GAGAGGTAGAATGCGTAAGCTAGGGATCGTCCTGGTCCCCCCCTGTGTGCTACCGATCCTGCTGT
130 GAGAGGGAGAATGCGTAAGCTAGGGATCGGCCTGGTCCCCCCCTGCGTGCTACCGATCCTGCTAT
*
16751817 T
195 C
* *
16751818 GGTCCTACTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAG
1 GATCCTACTACCGCAACCCTCGGTAC-GTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAG
* * * * *
16751883 AC-ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGTGCTCAGCAGGC
65 ACTACGG-ATAAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCAGGTGCTCAACAGAC
* * * ** *
16751947 CGAAGAGGCGA-AATGCGTAA-ATCGGGGA-CTGGCCTGGTCCCCCTCTGCGTGCTGTCGATCGT
129 CG-AGAGG-GAGAATGCGTAAGCT-AGGGATC-GGCCTGGTCCCCCCCTGCGTGCTACCGATCCT
16752009 GCTATC
190 GCTATC
* * * * *
16752015 GATCCTGCTGCCTCAACCCTCGGTTCAGTCCGATCTTAGACTGAGAATGAACT-TCGTATGC
1 GATCCTACTACCGCAACCCTCGGTAC-GTCCGATCTTAGACTGGGAATGAACTCT-GTATGC
16752076 CTAAGTCAAC
Statistics
Matches: 219, Mismatches: 32, Indels: 13
0.83 0.12 0.05
Matches are distributed among these distances:
195 3 0.01
196 114 0.52
197 101 0.46
198 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.23
Consensus pattern (195 bp):
GATCCTACTACCGCAACCCTCGGTACGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGA
CTACGGATAAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCAGGTGCTCAACAGACCG
AGAGGGAGAATGCGTAAGCTAGGGATCGGCCTGGTCCCCCCCTGCGTGCTACCGATCCTGCTATC
Found at i:16752464 original size:26 final size:26
Alignment explanation
Indices: 16752412--16752464 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16752402 GTTAGCTTAG
*
16752412 GCATACGGAGTTCATTCCATGTGTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
16752438 GCATATGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
16752464 G
1 G
16752465 ATAGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:16752636 original size:25 final size:26
Alignment explanation
Indices: 16752607--16752658 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
16752597 GTTGACTTAG
*
16752607 GCATATGGAGTTCA-TCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
16752632 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16752658 G
1 G
16752659 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 13 0.54
26 11 0.46
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16752992 original size:159 final size:157
Alignment explanation
Indices: 16752632--16753031 Score: 349
Period size: 159 Copynumber: 2.5 Consensus size: 157
16752622 CCCAGTCTAA
* * * *
16752632 GCATACGGAGTTCATTCGCAGTCTAAGATCAGA-TCGGATCGAGGGTTGCGACAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAGGATCAGACT-GGACCGAGGGTTGCGACAGCAGGACCGAC
* * * * * * * *
16752696 AGCATGCAGAGGGGATCGGGTTGGTACCTAGCTTGGCATTCTGCCTCTCCGGTCGACTGAGCGCC
65 AGCACGCAGAGGGGACCGGGCTGATACCTAGCTTGGCATTATGCCTCTCCGGCCGACTCAGCACC
* * * *
16752761 CGTACACCCGTTCCGTGGGTTGGCTTAG
130 CGAACACACGTTCCGTGAGTTGACTTAG
* *** * * * ** *
16752789 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CCGGACTGAGGGTTGTGGTAGCGGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCT-AGGATCAGACTGGACCGAGGGTTGCGACAGCAGGACCGA
* * *
16752852 CAGCACGTAGAGGGGGACCGGGCTGAT-CCTCGACTTGTGCATTATGCCTCTCCGGCCGCCTCAG
64 CAGCACGCAGA-GGGGACCGGGCTGATACCTAG-CTTG-GCATTATGCCTCTCCGGCCGACTCAG
* * *
16752916 CACCCGAACGCATGTTTCGTGAGTTGACTTAG
126 CACCCGAACACACGTTCCGTGAGTTGACTTAG
* * * * * ** *
16752948 GCATACGGAGTTCATTCCCAGTCTAGGATCAGACTAGACCGAGGGTTACAATAGCAAGATGGATA
1 GCATACGGAGTTCATTCCCAGTCTAGGATCAGACTGGACCGAGGGTTGCGACAGCAGGACCGACA
*
16753013 GCACGCAGGGGGGACCGGG
66 GCACGCAGAGGGGACCGGG
16753032 TCGATCCCCG
Statistics
Matches: 185, Mismatches: 50, Indels: 15
0.74 0.20 0.06
Matches are distributed among these distances:
156 2 0.01
157 53 0.29
158 35 0.19
159 92 0.50
160 3 0.02
ACGTcount: A:0.21, C:0.26, G:0.32, T:0.21
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAGGATCAGACTGGACCGAGGGTTGCGACAGCAGGACCGACA
GCACGCAGAGGGGACCGGGCTGATACCTAGCTTGGCATTATGCCTCTCCGGCCGACTCAGCACCC
GAACACACGTTCCGTGAGTTGACTTAG
Found at i:16753136 original size:26 final size:26
Alignment explanation
Indices: 16753106--16753158 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16753096 GTTGGCTTAG
16753106 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCATTCTCA-GTCTAA
16753132 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
16753158 G
1 G
16753159 ATAGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAA
Found at i:16753332 original size:26 final size:26
Alignment explanation
Indices: 16753303--16753355 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16753293 GTTGACTTAG
*
16753303 GCATATAGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
16753329 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
16753355 G
1 G
16753356 ATCAAATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:16753641 original size:697 final size:690
Alignment explanation
Indices: 16752254--16754541 Score: 2249
Period size: 697 Copynumber: 3.3 Consensus size: 690
16752244 CCTAGCCTAA
* * * * ** * *
16752254 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGACAGTTAGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGACAGCAAGATCAACA
* * * * ** * *
16752319 GCACGTAGGGTGGACCGGGCCGAT-CCCTAGCTTGTGCGTTCTGCCTCTCTGGCCGGCTGAGCG-
66 GCACGCAGGGGGGACCGAGCCGATCCCCGA-CTTACGCATTCTGCCTCTCTGGCCAGCTGAGCGC
* ** * * *
16752382 CTAGCATGCTCGTTTTGTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTGTAAGCATATGGA
130 CT-GCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGA
* * * * * *
16752447 GTTCATTCCCAGTCTAAGATAGGATCGGACCGAAGGTTACGGTAGCAGGACCAGCAGCAGAATCG
194 GTTCATTCCCAGTCTAAGATAGGA-CAGA-TG-AGGTT-CGATTGCAGGACCAGCAGTAGGATCG
* ** * * * * *
16752512 GTAGCATGC-AGGGGGTTCGGACCGATCCCTGGCTTACGCATTCTACCTCCCCGGCCGGCTGAAC
255 GTAGCACGCAAGGGGGACCGGACCGATCCCCGGCTTACGCATTCTATCTCTCTGG-CGGCTGAGC
* *
16752576 GGCCGTATGCTCATTTCATGGGTTGACTTAGGCATATGGAGTTCAT-CCCAGTCTAAGCATACGG
319 GCCCGTACGCTCATTTCATGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACGG
* * * ** *
16752640 AGTTCATTCGCAGTCTAAGATCAGATCGGATCGAGGGTTGCGACAGCAGGATCGACAGCATGCAG
384 AGTTCATTCCCAGTCTAAGATCAAATCGGATCGAGGG-TACGGTAGCAGGATCGACAGCACGCAG
* * * * *
16752705 AGGGGATCGGGTTGGTACCT-AGCTTGGCATTCTGCCTCTCCGGTCGACTGAGCGCCCGTACACC
448 AGGGGATCGGGTCGAT-CCTCGGCTTGGCATTCTGCCTCTCCGGTCGATTGAGCGCCCGTACGCC
* * * *
16752769 CGTTCCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACTGAGGG
512 TGTTCCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCGGACCGAGGG
* * * * *
16752834 TTGTGGTAGCGGGACCGACAGCACGTAGAGGGGGACCGGGCTGATCCTCGACTTGTGCATTATGC
577 TTGTGGCAGCGGGACCGGCAGCACGTAGAGAGGGACCGGGCCGATCCTCGGCTTGTGCATTATGC
* * * * *
16752899 CTCTCCGGCCGCCTCAGCACCCGAACGCAT-GTTTCGTGAGTTGACTTAG
642 CTCTCCGACTGGCTCAGCGCCCGAACGC-TCGTTTCGTGGGTTGACTTAG
* * * * ** *
16752948 GCATACGGAGTTCATTCCCAGTCTAGGATCAGA-CTAGACCGAGGGTTACAATAGCAAGATGGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATC-AGACCGAGGGTTGCGACAGCAAGATCAAC
* * * * * *
16753012 AGCACGCAGGGGGGACCGGGTCGATCCCCGACTTACGCATTCTGTCTTTCTAGCCAGCTGAACGC
65 AGCACGCAGGGGGGACCGAGCCGATCCCCGACTTACGCATTCTGCCTCTCTGGCCAGCTGAGCGC
16753077 CTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAG
130 CTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAG
* *
16753142 TTCATTCTCAGTCTAAGATAGGACCAGAGTGAGGGTTGCGATTGCAGGACCAACAGTAGGATCGG
195 TTCATTCCCAGTCTAAGATAGGA-CAGA-TGA-GGTT-CGATTGCAGGACCAGCAGTAGGATCGG
* * ** * * * *
16753207 TAGCACGCATAAGGGGACCGGGCTAATCCCCAGCTTACGCATTCTGTCTCTCTGGCAAGCTGAGT
256 TAGCACGCA-AGGGGGACCGGACCGATCCCCGGCTTACGCATTCTATCTCTCTGGC-GGCTGAGC
* ** * * *
16753272 GCCCATACGCTCATTTTGTGGGTTGACTTAGGCATATAGAGTTCATCCCCAATCTAAGCATACAG
319 GCCCGTACGCTCATTTCATGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACGG
* **
16753337 AGTTCATTCCCAGTCTAAGATCAAATCGGATCGAGGGATACGGTAGTAGGATCGGTAGCACGCAG
384 AGTTCATTCCCAGTCTAAGATCAAATCGGATCGAGGG-TACGGTAGCAGGATCGACAGCACGCAG
* * * *
16753402 -GGGGATCGGGTCGATCCTCGGCTTGCGCATTCAGCCTCTCCGGTCGATTGAGCCCCCGCATGCC
448 AGGGGATCGGGTCGATCCTCGGCTTG-GCATTCTGCCTCTCCGGTCGATTGAGCGCCCGTACGCC
16753466 TGTTCCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCGGACCGAGGG
512 TGTTCCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCGGACCGAGGG
* * * * * * * * * *
16753531 TTATGGCACCAGGATCGGCAACTCGCAGAGAAGGACTGGGCCGAT-CTGCGGTTTGTGCATTATG
577 TTGTGGCAGCGGGACCGGCAGCACGTAGAGAGGGACCGGGCCGATCCT-CGGCTTGTGCATTATG
* * * *
16753595 CCTTTCCGATTGGCTCAGCGCCCGAATGCTCGTTTCATGGGTTGACTTAG
641 CCTCTCCGACTGGCTCAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAG
* * * * *
16753645 GCATACGGAGTTCATTCCCAATCTAAGATCAGATCAAACCGAGGGTTGCGGCATCAGGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGACAGCAAGATCAACA
** * * * * * *
16753710 AAACACAGGGGGGATCGAGCCGATCCTCGGCTTGCGCATTCTGCCTCT-TCGGCTAGCTGAGCGC
66 GCACGCAGGGGGGACCGAGCCGATCCCCGACTTACGCATTCTGCCTCTCT-GGCCAGCTGAGCGC
* * * * *
16753774 CCGCACACTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-AT-CCGA
130 CTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCATACGGA
** ** * * * *
16753836 --TCA-GACC-G----AG---GG--TTATGA----C-AAT--AGGACTAGCAGTAGGATCGGCAA
194 GTTCATTCCCAGTCTAAGATAGGACAGATGAGGTTCGATTGCAGGACCAGCAGTAGGATCGGTAG
* *
16753881 CACGCAGGGGGGACC-GACCCGATCCTCGGCTTACGCATTCTACCTCTCCGACCGACCTCTCCGG
259 CACGCAAGGGGGACCGGA-CCGATCCCCGGCTTACGCATTCTA--TCT---------CTCT--GG
* * * *
16753945 TCGGCTGAGCACTCGCACTCTCATTTCATGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCT
310 -CGGCTGAGCGCCCGTACGCTCATTTCATGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCT
* * * *
16754010 AAGCATATGGAGTTCATTCCCAGTCTAAGATCGAATCAGACCGAGGGTAGCGGTAGCAGGATCGA
374 AAGCATACGGAGTTCATTCCCAGTCTAAGATCAAATCGGATCGAGGGTA-CGGTAGCAGGATCGA
* * * * * * * *
16754075 CAGCACGAAGAGGGGATCAGGTCGATCC-CTGGCTTGTGCATTTTGACTCTCTGGCCGGTTGAGT
438 CAGCACGCAGAGGGGATCGGGTCGATCCTC-GGCTTG-GCATTCTGCCTCTCCGGTCGATTGAGC
* *
16754139 GCCCGTACG-CTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTTTAAGCCCTAG
501 GCCCGTACGCCT-GTTCCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAG
* * *
16754203 TTGGACCGAGGGTTGTGGCAGCGGGACCAGCAGCACGTAGAGGCGGGACCGGGCCGATCCTCGGC
565 TCGGACCGAGGGTTGTGGCAGCGGGACCGGCAGCACGTAGA-GAGGGACCGGGCCGATCCTCGGC
** * * * *
16754268 TTACGTATTATGCCTCTCCGGCCT-GCTCAGTGCCCGAACGCTCGTTTTGTGGGTTGACTTAG
629 TTGTGCATTATGCCTCTCC-GACTGGCTCAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAG
* * *
16754330 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAGCAGGATCAACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGACAGCAAGATCAACA
** * * * * * *
16754395 GCACGTTGAGGGGACCGAGCCGATTCTCGGCTTACGCATTCTACCTCTCTGACC-GACTGAGCGC
66 GCACGCAGGGGGGACCGAGCCGATCCCCGACTTACGCATTCTGCCTCTCTGGCCAG-CTGAGCGC
* * * * **
16754459 CTGCATGCTCGTTTCATAGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCAAACATAG
130 CTGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAG
16754524 TTCATTCCCAGTCTAAGA
195 TTCATTCCCAGTCTAAGA
16754542 CGGATCAGAC
Statistics
Matches: 1296, Mismatches: 247, Indels: 100
0.79 0.15 0.06
Matches are distributed among these distances:
669 1 0.00
670 26 0.02
671 25 0.02
672 3 0.00
673 2 0.00
674 1 0.00
680 3 0.00
681 5 0.00
682 2 0.00
683 120 0.09
684 137 0.11
685 217 0.17
686 6 0.00
687 4 0.00
689 3 0.00
690 2 0.00
691 2 0.00
692 1 0.00
693 5 0.00
694 214 0.17
695 15 0.01
696 102 0.08
697 396 0.31
698 4 0.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (690 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGACAGCAAGATCAACA
GCACGCAGGGGGGACCGAGCCGATCCCCGACTTACGCATTCTGCCTCTCTGGCCAGCTGAGCGCC
TGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGT
TCATTCCCAGTCTAAGATAGGACAGATGAGGTTCGATTGCAGGACCAGCAGTAGGATCGGTAGCA
CGCAAGGGGGACCGGACCGATCCCCGGCTTACGCATTCTATCTCTCTGGCGGCTGAGCGCCCGTA
CGCTCATTTCATGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCAT
TCCCAGTCTAAGATCAAATCGGATCGAGGGTACGGTAGCAGGATCGACAGCACGCAGAGGGGATC
GGGTCGATCCTCGGCTTGGCATTCTGCCTCTCCGGTCGATTGAGCGCCCGTACGCCTGTTCCGTG
GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCGGACCGAGGGTTGTGGCAG
CGGGACCGGCAGCACGTAGAGAGGGACCGGGCCGATCCTCGGCTTGTGCATTATGCCTCTCCGAC
TGGCTCAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAG
Found at i:16753686 original size:159 final size:158
Alignment explanation
Indices: 16753473--16753852 Score: 392
Period size: 158 Copynumber: 2.4 Consensus size: 158
16753463 GCCTGTTCCG
* ** *
16753473 TGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCTAG-TCGGACCGAGGGTTATG
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATC-AGATCAGACCGAGGGTTATG
** ** * * * *
16753536 GCACCAGGATCGGCAACTCGCAGAGAAGGA-CTGGGCCGAT-CTGCGGTTTGTGCATTATGCCT-
64 GCACCAGGATCAACAAAACACAG-GAAGGATC-GAGCCGATCCT-CGGCTTGCGCATTATGCCTC
* * ** *
16753598 TTCCGATTGGCTCAGCGCCCGAATGCTCGTTTCA
126 TT-CGACTAGCTCAGCGCCCGAACACTCATTTCA
* * * **
16753632 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGATCAAACCGAGGGTTGCGGC
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTATGGC
* ** * *
16753697 ATCAGGATCAACAAAACACAGGGGGGATCGAGCCGATCCTCGGCTTGCGCATTCTGCCTCTTCGG
66 ACCAGGATCAACAAAACACAGGAAGGATCGAGCCGATCCTCGGCTTGCGCATTATGCCTCTTCGA
* * *
16753762 CTAGCTGAGCGCCCGCACACTCATTTCG
131 CTAGCTCAGCGCCCGAACACTCATTTCA
*
16753790 TGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCCGATCAGACCGAGGGTTATG
1 TGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTATG
16753853 ACAATAGGAC
Statistics
Matches: 180, Mismatches: 36, Indels: 11
0.79 0.16 0.05
Matches are distributed among these distances:
158 108 0.60
159 69 0.38
160 3 0.02
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.24
Consensus pattern (158 bp):
TGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTATGGC
ACCAGGATCAACAAAACACAGGAAGGATCGAGCCGATCCTCGGCTTGCGCATTATGCCTCTTCGA
CTAGCTCAGCGCCCGAACACTCATTTCA
Found at i:16754016 original size:26 final size:26
Alignment explanation
Indices: 16753986--16754038 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16753976 GTTGACTTAG
16753986 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
*
16754012 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
16754038 G
1 G
16754039 ATCGAATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:16754373 original size:685 final size:683
Alignment explanation
Indices: 16753281--16754514 Score: 1647
Period size: 685 Copynumber: 1.8 Consensus size: 683
16753271 TGCCCATACG
**
16753281 CTCATTTTGTGGGTTGACTTAGGCATATAGAGTTCATCCCCAATCTAAGCATACAGAGTTCATTC
1 CTCATTTCATGGGTTGACTTAGGCATATAGAGTTCATCCCCAATCTAAGCATACAGAGTTCATTC
* * * ** * *
16753346 CCAGTCTAAGATCAAATCGGATCGAGGGATACGGTAGTAGGATCGGTAGCACGCAGGGGGATCGG
66 CCAGTCTAAGATCAAATCAGACCGAGGGATACGGTAGCAGGATCGACAGCACGAAGGGGGATCAG
* * *
16753411 GTCGATCCTCGGCTTGCGCATTCAGCCTCTCCGGTCGATTGAGCCCCCGCATGCCTGTTCCGTGG
131 GTCGATCCTCGGCTTGCGCATTCAGACTCTCCGGCCGATTGAGCCCCCGCACGCCTGTTCCGTGG
16753476 GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCGGACCGAGGGTTATGGCACC
196 GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCGGACCGAGGGTTATGGCACC
* * * * * ** * *
16753541 AGGATCGGCAACTCGCAGAGAAGGACTGGGCCGATCTGCGGTTTGTGCATTATGCCTTTCCGATT
261 AGGACCAGCAACACGCAGAGAAGGACCGGGCCGATCTGCGGCTTACGCATTATGCCTCTCCGACT
* *
16753606 GGCTCAGCGCCCGAATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
326 GGCTCAGCGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAA
* * * *
16753671 GATCAGATCAAACCGAGGGTTGCGGCATCAGGATCAACAAAACACAGGGGGGATCGAGCCGATCC
391 GATCAGATCAAACCGAGGGTTGCGACAGCAGGATCAACAAAACACAGAGGGGACCGAGCCGATCC
* * * * *
16753736 TCGGCTTGCGCATTCTGCCTCT-TCGGCTAG-CTGAGCGCCCGCACACTCATTTCGTGGGTTGGC
456 TCGGCTTACGCATTCTACCTCTCT-GAC-AGACTGAGCGCCCGCACACTCATTTCATAGGTTGGC
*
16753799 TTAGGCATACGGAGTTCATTCCCA-GTCTAAGATCCGATCAGACCGAGGGTTATGACAATAGGAC
519 TTAGGCATACAGAGTTCATT-CCATGTCTAAGATCCGATCAGACCGAGGGTTATGACAATAGGAC
16753863 TAGCAGTAGGATCGGCAACACGCAGGGGGGACCGACCCGATCCTCGGCTTACGCATTCTACCTCT
583 TAGCAGTAGGATCGGCAACACGCAGGGGGGACCGACCCGATCCTCGGCTTACGCATTCTACCTCT
16753928 CCGACCGACCTCTCCGGTCGGCTGAGCACTCGCACT
648 CCGACCGACCTCTCCGGTCGGCTGAGCACTCGCACT
* * **
16753964 CTCATTTCATGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTC
1 CTCATTTCATGGGTTGACTTAGGCATATAGAGTTCATCCCCAATCTAAGCATACAGAGTTCATTC
*
16754029 CCAGTCTAAGATCGAATCAGACCGAGGG-TAGCGGTAGCAGGATCGACAGCACGAAGAGGGGATC
66 CCAGTCTAAGATCAAATCAGACCGAGGGATA-CGGTAGCAGGATCGACAGCACGAAG-GGGGATC
* ** * * ** * *
16754093 AGGTCGATCC-CTGGCTTGTGCATTTTGACTCTCTGGCCGGTTGAGTGCCCGTACG-CTCGTTTC
129 AGGTCGATCCTC-GGCTTGCGCATTCAGACTCTCCGGCCGATTGAGCCCCCGCACGCCT-GTTCC
* * *
16754156 GTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTTTAAGCCCTAGTTGGACCGAGGGTTGTGG
192 GTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCGGACCGAGGGTTATGG
* * * * ** *
16754221 CAGCGGGACCAGCAGCACGTAGAGGCGGGACCGGGCCGATCCT-CGGCTTACGTATTATGCCTCT
257 CACCAGGACCAGCAACACGCAGA-GAAGGACCGGGCCGAT-CTGCGGCTTACGCATTATGCCTCT
* * **
16754285 CCGGCCT-GCTCAGTGCCCGAACGCTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCC
320 CC-GACTGGCTCAGCGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCC
* ** ** ***
16754349 AGTCTAAGATCAGATCGGACCGAGGGTTGCGACAGCAGGATCAACAGCACGTTGAGGGGACCGAG
384 AATCTAAGATCAGATCAAACCGAGGGTTGCGACAGCAGGATCAACAAAACACAGAGGGGACCGAG
* * * ** *
16754414 CCGATTCTCGGCTTACGCATTCTACCTCTCTGACCGACTGAGCGCCTGCATGCTCGTTTCATAGG
449 CCGATCCTCGGCTTACGCATTCTACCTCTCTGACAGACTGAGCGCCCGCACACTCATTTCATAGG
16754479 TTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
514 TTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
16754515 CAAACATAGT
Statistics
Matches: 466, Mismatches: 75, Indels: 18
0.83 0.13 0.03
Matches are distributed among these distances:
682 2 0.00
683 108 0.23
684 134 0.29
685 217 0.47
686 5 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (683 bp):
CTCATTTCATGGGTTGACTTAGGCATATAGAGTTCATCCCCAATCTAAGCATACAGAGTTCATTC
CCAGTCTAAGATCAAATCAGACCGAGGGATACGGTAGCAGGATCGACAGCACGAAGGGGGATCAG
GTCGATCCTCGGCTTGCGCATTCAGACTCTCCGGCCGATTGAGCCCCCGCACGCCTGTTCCGTGG
GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCGGACCGAGGGTTATGGCACC
AGGACCAGCAACACGCAGAGAAGGACCGGGCCGATCTGCGGCTTACGCATTATGCCTCTCCGACT
GGCTCAGCGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAA
GATCAGATCAAACCGAGGGTTGCGACAGCAGGATCAACAAAACACAGAGGGGACCGAGCCGATCC
TCGGCTTACGCATTCTACCTCTCTGACAGACTGAGCGCCCGCACACTCATTTCATAGGTTGGCTT
AGGCATACAGAGTTCATTCCATGTCTAAGATCCGATCAGACCGAGGGTTATGACAATAGGACTAG
CAGTAGGATCGGCAACACGCAGGGGGGACCGACCCGATCCTCGGCTTACGCATTCTACCTCTCCG
ACCGACCTCTCCGGTCGGCTGAGCACTCGCACT
Found at i:16754487 original size:158 final size:157
Alignment explanation
Indices: 16754019--16754514 Score: 466
Period size: 158 Copynumber: 3.1 Consensus size: 157
16754009 TAAGCATATG
* * * *
16754019 GAGTTCATTCCCA-GTCTAAGATC-GAATCAGACCGAGGGTAGCGGTAGCAGGATCGACAGCACG
1 GAGTTCATT-CCATGTCTAAGATCAG-ATCGGACCGAGGGTTGCGGCAGCAGGATCAACAGCACG
* * * * ** * *
16754082 AAGAGGGGATC-AGGTCGA-TCCCTGGCTTGTGCATTTTGA-CTCTCTGGCCGGTTGAGTGCCCG
64 TAGAGGGGACCGA-GCCGATTCTC-GGCTTACGCATTAT-ACCTCTCTGGCC-GCTGAGTGCCCG
* **
16754144 TACGCTCGTTTCGTGGGTTGGCTTAGGCATAGG
125 AACGCTCGTTTCGTGGGTTGGCTTAGGCATACA
* ** * * * * *
16754177 GAGTTCATTCCATGTTTAAGCCCTAG-TTGGACCGAGGGTTGTGGCAGCGGGACCAGCAGCACGT
1 GAGTTCATTCCATGTCTAAGATC-AGATCGGACCGAGGGTTGCGGCAGCAGGATCAACAGCACGT
* * * * * *
16754241 AGAGGCGGGACCGGGCCGATCCTCGGCTTACGTATTATGCCTCTCCGGCCTGCTCAGTGCCCGAA
65 AGA-G-GGGACCGAGCCGATTCTCGGCTTACGCATTATACCTCTCTGGCC-GCTGAGTGCCCGAA
* *
16754306 CGCTCGTTTTGTGGGTTGACTTAGGCATACA
127 CGCTCGTTTCGTGGGTTGGCTTAGGCATACA
*
16754337 GAGTTCATTCCCA-GTCTAAGATCAGATCGGACCGAGGGTTGCGACAGCAGGATCAACAGCACGT
1 GAGTTCATT-CCATGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCAACAGCACGT
* * * * * * *
16754401 TGAGGGGACCGAGCCGATTCTCGGCTTACGCATTCTACCTCTCTGACCGACTGAGCGCCTGCATG
65 AGAGGGGACCGAGCCGATTCTCGGCTTACGCATTATACCTCTCTGGCCG-CTGAGTGCCCGAACG
* *
16754466 CTCGTTTCATAGGTTGGCTTAGGCATACA
129 CTCGTTTCGTGGGTTGGCTTAGGCATACA
16754495 GAGTTCATTCCATGTCTAAG
1 GAGTTCATTCCATGTCTAAG
16754515 CAAACATAGT
Statistics
Matches: 268, Mismatches: 58, Indels: 24
0.77 0.17 0.07
Matches are distributed among these distances:
157 7 0.03
158 135 0.50
159 4 0.01
160 117 0.44
161 5 0.02
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (157 bp):
GAGTTCATTCCATGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCAACAGCACGTA
GAGGGGACCGAGCCGATTCTCGGCTTACGCATTATACCTCTCTGGCCGCTGAGTGCCCGAACGCT
CGTTTCGTGGGTTGGCTTAGGCATACA
Found at i:16755285 original size:26 final size:26
Alignment explanation
Indices: 16755255--16755307 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16755245 GTTGACTTAG
16755255 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
16755281 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16755307 G
1 G
16755308 ATCAGAATGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16755646 original size:26 final size:26
Alignment explanation
Indices: 16755597--16755649 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16755587 GTTGGCTTAT
*
16755597 GCATACAGAGTTCATTCCTTGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
*
16755623 GCATACGGAGTTCATTTCC-AGTCTAA
1 GCATACAGAGTTCA-TTCCTAGTCTAA
16755649 G
1 G
16755650 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:16755851 original size:12 final size:12
Alignment explanation
Indices: 16755834--16755858 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
16755824 GTGCTGGTAC
16755834 TTGGCCCTTATA
1 TTGGCCCTTATA
16755846 TTGGCCCTTATA
1 TTGGCCCTTATA
16755858 T
1 T
16755859 CTTCTCCACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.16, T:0.44
Consensus pattern (12 bp):
TTGGCCCTTATA
Found at i:16756248 original size:26 final size:26
Alignment explanation
Indices: 16756212--16756264 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16756202 GTTGACTTAG
16756212 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16756238 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16756264 G
1 G
16756265 ATTGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16756917 original size:26 final size:26
Alignment explanation
Indices: 16756881--16756933 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16756871 GTTGACTTAG
*
16756881 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
16756907 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
16756933 G
1 G
16756934 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:16757093 original size:184 final size:184
Alignment explanation
Indices: 16756773--16757471 Score: 616
Period size: 184 Copynumber: 3.7 Consensus size: 184
16756763 AGCAGGACCA
* * * ** **
16756773 GTAGCAGGATCGGTAGCACGTAGGGGGGACC-GAGTCGATCCCTGGCTTACGCATTCTGCCTCTC
1 GTAGTAGGATCGGTAGCACGCAGGGGGGACCGGA-TTGATCCCCAGCTTGTGCATTCTGCCTCTC
** * * * * * ** * *
16756837 CGGTCGGTTGATCACTCGTAAGCTCAATTAATGGGTTGACTTAGGCATACAGAGTTCATCCCCA-
65 CGACCGGCTGAGCACCCGCAAGCCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT-CCCAT
* * *
16756901 GTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGATCGAGGGTTGTG
129 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCAAGGGTTGTG
*
16756957 GTAGTAGGATCGGTAGCACGCAGGGGGGACCGGATTGATCCCCAGCTTGTGCATTTTGCCTCTCC
1 GTAGTAGGATCGGTAGCACGCAGGGGGGACCGGATTGATCCCCAGCTTGTGCATTCTGCCTCTCC
* * * * *
16757022 GACCGGCTGAGCGCCCGCATGCCCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGC
66 GACCGGCTGAGCACCCGCAAGCCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATGT
* *
16757087 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTGCGGTAGCAGG
131 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCAAGGGTT---GT-----G
* * * * * * **
16757149 ACCAGTAGCAGGATCGATAGCACGCTAGGGGGGATCGGGTCGAT-CCCTGACTTACGCATTCTGC
1 ----GTAGTAGGATCGGTAGCACGC-AGGGGGGACCGGATTGATCCCCAG-CTTGTGCATTCTGC
* * * * * * *
16757213 CACTCCGACGGGCTGATCACTCACAAGCTCGATTCATGGGTTGACTTAGGCATACGGAGTTCATC
60 CTCTCCGACCGGCTGAGCACCCGCAAGCCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATC
** * **
16757278 CC-TAGTCTAAGCATACAAAGTTCACTCCCAGTCTAAGATCAGACCGGATCAAGGGTTACG
125 CCAT-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCAAGGGTTGTG
* * **** * *
16757338 GTAGTAGGATCCGTAGCACACATAAAGGACC-GAGCTGATCCCCGGCTTGTGCATTCTGCCTCTC
1 GTAGTAGGATCGGTAGCACGCAGGGGGGACCGGA-TTGATCCCCAGCTTGTGCATTCTGCCTCTC
** * * * * * *
16757402 TAACCGGTTGAGCACCCGTACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATCCCATG
65 CGACCGGCTGAGCACCCGCAAGCCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATG
16757467 TCTAA
130 TCTAA
16757472 CCCCAACCAG
Statistics
Matches: 408, Mismatches: 87, Indels: 40
0.76 0.16 0.07
Matches are distributed among these distances:
183 4 0.01
184 223 0.55
185 24 0.06
187 2 0.00
189 1 0.00
192 1 0.00
196 24 0.06
197 129 0.32
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (184 bp):
GTAGTAGGATCGGTAGCACGCAGGGGGGACCGGATTGATCCCCAGCTTGTGCATTCTGCCTCTCC
GACCGGCTGAGCACCCGCAAGCCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATGT
CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCAAGGGTTGTG
Found at i:16757379 original size:381 final size:380
Alignment explanation
Indices: 16756622--16757471 Score: 1173
Period size: 381 Copynumber: 2.2 Consensus size: 380
16756612 CAGTCCCTGA
* * * * * * *
16756622 CTTGCGCATTCTACCTTTCCGATCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTACGC
1 CTTGTGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGC
* * *
16756687 ATACGAAGTTTATTCCATGCCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGAACCA
66 ATACGGAGTTCATTCCATGCCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAACCA
*
16756752 AGGGTTGCGATAGCAGGACCAGTAGCAGGATCGGTAGCACGTAGGGGGGACCGAGTCGATCCCTG
131 AGGGTTGCGATAGCAGGACCAGTAGCAGGATCGATAGCACGTAGGGGGGACCGAGTCGATCCCTG
* * * * **
16756817 GCTTACGCATTCTGCCTCTCCGGTCGGTTGATCACTCGTAAGCTCAATTAATGGGTTGACTTAGG
196 ACTTACGCATTCTGCCACTCCGGACGGCTGATCACTCACAAGCTCAATTAATGGGTTGACTTAGG
** * *
16756882 CATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGATC
261 CATACAGAGTTCATCCCCAGTCTAAGCATACAAAGTTCACTCCCAATCTAAGATCAGACCGGATC
* ** * * *** *
16756947 GAGGGTTGTGGTAGTAGGATCGGTAGCACGCAGGGGGGACCGGATTGATCCCCAG
326 AAGGGTTACGGTAGTAGGATCCGTAGCACACAGAAAGGACCGGACTGATCCCCAG
* *
16757002 CTTGTGCATTTTGCCTCTCCGACCGGCTGAGCGCCCGCATGCCCGTTTCATGGGTTGGCTTAGGC
1 CTTGTGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGC
* * *
16757067 ATACGGAGTTCATTCCATGCCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCA
66 ATACGGAGTTCATTCCATGCCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAACCA
* * *
16757132 AGGGTTGCGGTAGCAGGACCAGTAGCAGGATCGATAGCACGCTAGGGGGGATCGGGTCGATCCCT
131 AGGGTTGCGATAGCAGGACCAGTAGCAGGATCGATAGCACG-TAGGGGGGACCGAGTCGATCCCT
* *
16757197 GACTTACGCATTCTGCCACTCC-GACGGGCTGATCACTCACAAGCTCGATTCATGGGTTGACTTA
195 GACTTACGCATTCTGCCACTCCGGAC-GGCTGATCACTCACAAGCTCAATTAATGGGTTGACTTA
* * *
16757261 GGCATACGGAGTTCATCCCTAGTCTAAGCATACAAAGTTCACTCCCAGTCTAAGATCAGACCGGA
259 GGCATACAGAGTTCATCCCCAGTCTAAGCATACAAAGTTCACTCCCAATCTAAGATCAGACCGGA
* *
16757326 TCAAGGGTTACGGTAGTAGGATCCGTAGCACACATAAAGGACC-GAGCTGATCCCCGG
324 TCAAGGGTTACGGTAGTAGGATCCGTAGCACACAGAAAGGACCGGA-CTGATCCCCAG
** * * * *
16757383 CTTGTGCATTCTGCCTCTCTAACCGGTTGAGCACCCGTACGCCCGTTTCGTGGGTTGGCTTAGGC
1 CTTGTGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGC
* * *
16757448 ATAGGGAGTTCATCCCATGTCTAA
66 ATACGGAGTTCATTCCATGCCTAA
16757472 CCCCAACCAG
Statistics
Matches: 411, Mismatches: 56, Indels: 5
0.87 0.12 0.01
Matches are distributed among these distances:
380 158 0.38
381 253 0.62
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.24
Consensus pattern (380 bp):
CTTGTGCATTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGGC
ATACGGAGTTCATTCCATGCCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAACCA
AGGGTTGCGATAGCAGGACCAGTAGCAGGATCGATAGCACGTAGGGGGGACCGAGTCGATCCCTG
ACTTACGCATTCTGCCACTCCGGACGGCTGATCACTCACAAGCTCAATTAATGGGTTGACTTAGG
CATACAGAGTTCATCCCCAGTCTAAGCATACAAAGTTCACTCCCAATCTAAGATCAGACCGGATC
AAGGGTTACGGTAGTAGGATCCGTAGCACACAGAAAGGACCGGACTGATCCCCAG
Found at i:16757812 original size:26 final size:26
Alignment explanation
Indices: 16757762--16757814 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16757752 GTTGGCTTAG
*
16757762 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATCTCTAA
16757788 GCATACGGAGTTCATTCC-TACTCTAA
1 GCATACGGAGTTCATTCCAT-CTCTAA
16757814 G
1 G
16757815 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATCTCTAA
Found at i:16757993 original size:26 final size:26
Alignment explanation
Indices: 16757954--16758009 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
16757944 TGGGTTAACT
* *
16757954 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACAGAGTTCATCCACAGTC
*
16757980 TAAGCATACAGAGTTCATTCACAGTC
1 TAAGCATACAGAGTTCATCCACAGTC
16758006 TAAG
1 TAAG
16758010 ATCAGACCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATCCACAGTC
Found at i:16758332 original size:26 final size:26
Alignment explanation
Indices: 16758302--16758354 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16758292 GTTGGCTTAG
*
16758302 GCATACGGGGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16758328 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16758354 G
1 G
16758355 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16758902 original size:26 final size:26
Alignment explanation
Indices: 16758852--16758904 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16758842 GTTGACTTAG
*
16758852 GCATACGGAGTTCATCTCCAGTCTAA
1 GCATACGGAGTTCATCTCCAATCTAA
16758878 GCATACGGAGTTCAT-TGCCAATCTAA
1 GCATACGGAGTTCATCT-CCAATCTAA
16758904 G
1 G
16758905 ATAGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCTCCAATCTAA
Done.