Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19866354
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 74000 characters in sequence are not A, C, G, or T
File 81 of 100
Found at i:16759247 original size:26 final size:26
Alignment explanation
Indices: 16759195--16759247 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16759185 GTTAGCTTAG
* *
16759195 GCATACGGAGTTCATTTCATGTTTAA
1 GCATACGGAGTTCATTCCATGTCTAA
16759221 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
16759247 G
1 G
16759248 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:16759279 original size:343 final size:347
Alignment explanation
Indices: 16758475--16759279 Score: 836
Period size: 354 Copynumber: 2.3 Consensus size: 347
16758465 GCGTCGGTAA
* * * * *
16758475 GCTCGTTTCATGGGTTGACTTTGGCATATGGAGTTCATCCCCAGTCTAAGCATACGAAGTTAATT
1 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCTCCAGTCTAAGCATACGGAGTTCATT
* * * *
16758540 CCCAGTCTAAGATC-GAACCAGACTGAGGGTTGCGACAGTAGGATCGGTGGCACGTAGGGGGTCC
66 CCCAGTCTAAGATCAG-ACCAGACTGAGGGTTGCGACAGCAGGATCGATAGCACGCAGGGGGTCC
* * ** * * *
16758604 GGGTCGATCCTCGACTTGTGTATTCTACCTCTCCGGTCGACTGAGCGCCTGCACGCCCGTTTCAT
130 GGCTCGATCCTAGACTTGCATATTCTACCTCTCCGATCGACTGAGCGCCCGCACGCCCATTTCAT
* *
16758669 GGGTTGGCCTAGGCAAAGGGAGTTCATTCCATGTTAAGCCCCAACCGGACCGAGGGTTGTGGCTG
195 GGGTTGGCCTAGGCAAAGGGAGTTCATTCCACGTTAAGCCCCAACCGGACCGAGGGTTGTGGCAG
* * * * * ** * *
16758734 TAGGACTAGCAACACGTAGAGGGGGACTGGGTCGATCCTCGGCTTACTTATTCTGCCTCTTCGGT
260 GAGGACTAGCAACACGCAGAAGGGGACTGGGCCAATCCTCGGCTTACGCATTCTACCTCTTCGGC
* * *
16758799 TGGCCTCTCCGACCGACTGAGCACCCGGAT
325 CGG-CTCT-CGA-C-AC--AG-ACCCGCAC
* *
16758829 GCTTG-TTCTTTGGGTTGACTTAGGCATACGGAGTTCATCTCCAGTCTAAGCATACGGAGTTCAT
1 GCTCGTTTC-ATGGGTTGACTTAGGCATACGGAGTTCATCTCCAGTCTAAGCATACGGAGTTCAT
* * * *
16758893 TGCCAATCTAAGAT-AGGACCGGACTGAGGGTTGC-AGTAGCAGGATCGATAGCACGCAGGAGGG
65 TCCCAGTCTAAGATCA-GACCAGACTGAGGGTTGCGA-CAGCAGGATCGATAGCACGCAGG-GGG
* *
16758956 AT-CGAGCT-GATCCCTAG-CTTGCATATTCTACCTCTCCGATCGGCTGAGCGCCCGCTCGCCCA
127 -TCCG-GCTCGAT-CCTAGACTTGCATATTCTACCTCTCCGATCGACTGAGCGCCCGCACGCCCA
* * *
16759018 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCACGTCTAAGCCCCAGCCGGACCGAGGGTT
189 TTTCATGGGTTGGCCTAGGCAAAGGGAGTTCATTCCACGT-TAAGCCCCAACCGGACCGAGGGTT
* * * *
16759083 GTGGCAGCGA-GA-TCGGTAGCACGCAGAAGTGGA-TCGGGCCAATCCTCGGCTTACGCATTCTA
253 GTGGCAG-GAGGACT-AGCAACACGCAGAAGGGGACT-GGGCCAATCCTCGGCTTACGCATTCTA
16759145 CCTCTTCGGCCGG-T-T-GA-AC-G-CCCGCAC
315 CCTCTTCGGCCGGCTCTCGACACAGACCCGCAC
* * *
16759172 GCTCGTTTCGTGGGTT-AGCTTAGGCATACGGAGTTCAT-TTCATGTTTAAGCATACGGAGTTCA
1 GCTCGTTTCATGGGTTGA-CTTAGGCATACGGAGTTCATCTCCA-GTCTAAGCATACGGAGTTCA
* * *
16759235 TTCCCAGTCTAAGATCAGATCAGACCGAGGGTTACGACAGCAGGA
64 TTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGACAGCAGGA
16759280 CCAACAGCAA
Statistics
Matches: 378, Mismatches: 56, Indels: 45
0.79 0.12 0.09
Matches are distributed among these distances:
342 4 0.01
343 88 0.23
344 5 0.01
345 1 0.00
348 2 0.01
351 2 0.01
353 5 0.01
354 100 0.26
355 86 0.23
356 84 0.22
357 1 0.00
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (347 bp):
GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCTCCAGTCTAAGCATACGGAGTTCATT
CCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGACAGCAGGATCGATAGCACGCAGGGGGTCCG
GCTCGATCCTAGACTTGCATATTCTACCTCTCCGATCGACTGAGCGCCCGCACGCCCATTTCATG
GGTTGGCCTAGGCAAAGGGAGTTCATTCCACGTTAAGCCCCAACCGGACCGAGGGTTGTGGCAGG
AGGACTAGCAACACGCAGAAGGGGACTGGGCCAATCCTCGGCTTACGCATTCTACCTCTTCGGCC
GGCTCTCGACACAGACCCGCAC
Found at i:16759430 original size:553 final size:552
Alignment explanation
Indices: 16758751--16759762 Score: 1277
Period size: 553 Copynumber: 1.8 Consensus size: 552
16758741 AGCAACACGT
* * * * * * *
16758751 AGAGGGGGACTGGGTCGATCCTCGGCTTACTTATTCTGCCTCTTCGGTTGGCCTCTCCGACCGAC
1 AGAGGGGGACTGGGCCGATCCCCGGCTTACGTATTCTACCTCTACGATCGGCCTCTCCGACCGAC
** ** * *
16758816 TGAGCACCCGGATGCTTGTTCTTTGGGTTGACTTAGGCATACGGAGTTCATCTCCAGTCTAAGCA
66 TGAGCACCCACACACTCGTTCTTTGGGTTGACTTAGGCATACGAAGTTCATCTCCAGTCTAAGCA
* * * *
16758881 TACGGAGTTCATTGCCAATCTAAGATAGGACCGGACTGAGGGTTGC-AGTAGCAGGATCGATAGC
131 TACGGAGTTCATTCCCAATCTAAGATAGGACCGGACCGAGGGTTGCGA-CAGCAGGATCGACAGC
* * * *
16758945 ACGCAGGAGGGA-TCGAGCTGATCCCTAG-CTTGCATATTCTACCTCTCCGATC-GGCTGAGCGC
195 ACGCAGGAGGGACCCG-GCCGAT-CCTAGACTTGCACATTCTACCTCT-CGAGCTGGCTGAGCGC
* * * * * *
16759007 CCGCTCGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCACGTCTAAGCCCCAGCCG
257 CCGCACACCCATTTCATGGGTTGGCTTAGGCATAGGAAGTTCATTCAAAGTCTAAGCCCCAACCG
* ** * * * *
16759072 GACCGAGGGTTGTGGCAGC-GAGATCGGTAGCACGCAGAAGTGGATCGGGCCAATCCTCGGCTTA
322 GACCGAGGGTTGTGGCAGCTG-GACCGACAGCACACAGAAGGGGATCGAGCCAATCCCCGGCTTA
* * * * * * *
16759136 CGCATTCTACCTCTTCGGCCGGTTGAACGCCCGCACGCTCGTTTCGTGGGTT-AGCTTAGGCATA
386 CG-ATTATACCTCTCCGGCCAGCTCAACGCCCGCACGCTCATTTCGTGGGTTGA-CATAGGCATA
*
16759200 CGGAGTTCATTTCATGTTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGG
449 CGAAGTTCATTTCATGTTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGG
16759265 GTTACGACAGCAGGACCAACAGCAAGATCAACAGCACAC
514 GTTACGACAGCAGGACCAACAGCAAGATCAACAGCACAC
* * *
16759304 AGAGGGGGACTGGGCCGATCCCCGGC-TAGCGTATTCTACCTCTACGATCGGCCTCTCTGGCCGG
1 AGAGGGGGACTGGGCCGATCCCCGGCTTA-CGTATTCTACCTCTACGATCGGCCTCTCCGACCGA
*
16759368 CTGAGCACCCACACACTCGTT-TTGTGGGTTGACTTAGGCATATGAAGTTCATC-CCTAGTCTAA
65 CTGAGCACCCACACACTCGTTCTT-TGGGTTGACTTAGGCATACGAAGTTCATCTCC-AGTCTAA
* * * *
16759431 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGACAGTAGGATCGGCA
128 GCATACGGAGTTCATTCCCAATCTAAGATAGGACCGGACCGAGGGTTGCGACAGCAGGATCGACA
* * * ** *
16759496 GCGCGCAGGGGGGACCCGTCCGATCCTAGACTTGTGCATTCTACCTCTCTAGCTGGCTGAGCGCC
193 GCACGCAGGAGGGACCCGGCCGATCCTAGACTTGCACATTCTACCTCTCGAGCTGGCTGAGCGCC
** * *
16759561 CGCACACCTGTTTCATGGGTTGGCTTAGGCATAGGAAGTTCTTTCAAAGTTTAAGCCCCAACCGG
258 CGCACACCCATTTCATGGGTTGGCTTAGGCATAGGAAGTTCATTCAAAGTCTAAGCCCCAACCGG
* **
16759626 ACCGAGGGTTGTGGCAGCTGGACCGACAGCACACAGAGGGGGATCGAGCTGATCCCCGGCTTACG
323 ACCGAGGGTTGTGGCAGCTGGACCGACAGCACACAGAAGGGGATCGAGCCAATCCCCGGCTTACG
* * *
16759691 ATTATAGCTCTCCGGTCAGCTCAGCGCCCGCACGCTCATTTCGTGGGTTGACATAGGCATACGAA
388 ATTATACCTCTCCGGCCAGCTCAACGCCCGCACGCTCATTTCGTGGGTTGACATAGGCATACGAA
16759756 GTTCATT
453 GTTCATT
16759763 CCCAGTCTAA
Statistics
Matches: 384, Mismatches: 66, Indels: 19
0.82 0.14 0.04
Matches are distributed among these distances:
552 73 0.19
553 307 0.80
554 4 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (552 bp):
AGAGGGGGACTGGGCCGATCCCCGGCTTACGTATTCTACCTCTACGATCGGCCTCTCCGACCGAC
TGAGCACCCACACACTCGTTCTTTGGGTTGACTTAGGCATACGAAGTTCATCTCCAGTCTAAGCA
TACGGAGTTCATTCCCAATCTAAGATAGGACCGGACCGAGGGTTGCGACAGCAGGATCGACAGCA
CGCAGGAGGGACCCGGCCGATCCTAGACTTGCACATTCTACCTCTCGAGCTGGCTGAGCGCCCGC
ACACCCATTTCATGGGTTGGCTTAGGCATAGGAAGTTCATTCAAAGTCTAAGCCCCAACCGGACC
GAGGGTTGTGGCAGCTGGACCGACAGCACACAGAAGGGGATCGAGCCAATCCCCGGCTTACGATT
ATACCTCTCCGGCCAGCTCAACGCCCGCACGCTCATTTCGTGGGTTGACATAGGCATACGAAGTT
CATTTCATGTTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTACGA
CAGCAGGACCAACAGCAAGATCAACAGCACAC
Found at i:16759935 original size:26 final size:26
Alignment explanation
Indices: 16759905--16759957 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16759895 GTTGGCTTAG
16759905 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
16759931 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
16759957 G
1 G
16759958 ATCAAACTCG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:16760292 original size:26 final size:26
Alignment explanation
Indices: 16760263--16760315 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16760253 GTTGACTTAG
*
16760263 GCATACGGAGTTCA-TCCCCAGTCTAA
1 GCATACAGAGTTCACT-CCCAGTCTAA
*
16760289 GCATACAGAGTTCACTCCTAGTCTAA
1 GCATACAGAGTTCACTCCCAGTCTAA
16760315 G
1 G
16760316 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCACTCCCAGTCTAA
Found at i:16760841 original size:26 final size:26
Alignment explanation
Indices: 16760812--16760864 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16760802 ATTGACTTAG
16760812 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
16760838 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
16760864 G
1 G
16760865 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:16761471 original size:26 final size:26
Alignment explanation
Indices: 16761435--16761487 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16761425 GTTGACTTAG
16761435 GCATACAGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* * *
16761461 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
16761487 G
1 G
16761488 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:16762336 original size:26 final size:26
Alignment explanation
Indices: 16762306--16762358 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16762296 GTTGACTTAG
* *
16762306 GCATATGGAGTTTATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
*
16762332 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
16762358 G
1 G
16762359 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:16762844 original size:26 final size:26
Alignment explanation
Indices: 16762808--16762860 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16762798 CTTGGCTTAG
16762808 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
16762834 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16762860 G
1 G
16762861 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16764068 original size:26 final size:26
Alignment explanation
Indices: 16764034--16764084 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16764024 TGACTTAGGT
* *
16764034 ATACGAAGTTCATTGCCAGTCTAAGC
1 ATACAAAGTTCATTCCCAGTCTAAGC
16764060 ATACAAAGTTCATTCCCAGTCTAAG
1 ATACAAAGTTCATTCCCAGTCTAAG
16764085 ATCCGACCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.27
Consensus pattern (26 bp):
ATACAAAGTTCATTCCCAGTCTAAGC
Found at i:16764856 original size:26 final size:26
Alignment explanation
Indices: 16764826--16764878 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16764816 GTTGACTTAG
16764826 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
** *
16764852 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16764878 G
1 G
16764879 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16766988 original size:26 final size:26
Alignment explanation
Indices: 16766937--16766989 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
16766927 GTTGACTTAG
*
16766937 GCATACAATGTTCATCCCTAGTCTAA
1 GCATACAATGTTCATCCCTAGGCTAA
16766963 GCATACAGA-GTTCATTCCC-AGGCTAA
1 GCATACA-ATGTTCA-TCCCTAGGCTAA
16766989 G
1 G
16766990 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAATGTTCATCCCTAGGCTAA
Found at i:16767437 original size:158 final size:157
Alignment explanation
Indices: 16766963--16767464 Score: 485
Period size: 158 Copynumber: 3.2 Consensus size: 157
16766953 CCTAGTCTAA
* * * *
16766963 GCATACAGAGTTCATTCCCA-GGCTAAGATCAGA-CCGGACTGAGGGTTGCGGTGGCAGGATCGA
1 GCATACGGAGTTCATT-CCATGTCTAAGATC-GATCCGGACCGAGGGTTGCGGTAGCAGGATCGA
* * * *
16767026 CAGCATTTAGGAGGGACTGGGTC-GATCCCCAGCTTGCGCATTCTGCCTCTCCAGCCGGTTGAGC
64 CAGCATGTAGGAGGGACTGGGTCTG-TCCCCGGCTTACGCATTCTGCCTCTCCA-TCGGTTGAGC
* * *
16767090 ACCCGCACGCCCATTCCGTGGGTT-ATCTTAG
127 ACCCGCACGCTCGTTTCGTGGGTTGA-CTTAG
* ** * * * * * *
16767121 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAGT-TGGACCGAGGGTTGTGGTAACGGGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAAGATCGA-TCCGGACCGAGGGTTGCGGTAGCAGGATCGAC
* * ** * * * * * * * *
16767185 AGCACGCAGAGAGGGACCAGGCCTATCCCCGGGTTACGCATTATGCCTTTCCAATCGGCTCAGCG
65 AGCATGTAG-GAGGGACTGGGTCTGTCCCCGGCTTACGCATTCTGCCTCTCC-ATCGGTTGAGCA
* * *
16767250 GCCGAACGCTCGTGTCGTGGGTTGACTTAG
128 CCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
16767280 GCATACGGAGTTCATTCTCA-GTCTAAGATCGATCCGGACCGAGGGATGCGATAGCAGGATCGAT
1 GCATACGGAGTTCATTC-CATGTCTAAGATCGATCCGGACCGAGGGTTGCGGTAGCAGGATCGAC
* * *
16767344 AGCATGTAGGGGGGACTGGGTCTGTCCCCGGCTTACGTATTCTGCCTCTCCGATCAGTTGAGCAC
65 AGCATGTAGGAGGGACTGGGTCTGTCCCCGGCTTACGCATTCTGCCTCTCC-ATCGGTTGAGCAC
* *
16767409 CCGCACGCTCGTTTCGTGAGTTGGCTTAG
129 CCGCACGCTCGTTTCGTGGGTTGACTTAG
16767438 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
16767465 CATATGGAGT
Statistics
Matches: 266, Mismatches: 68, Indels: 20
0.75 0.19 0.06
Matches are distributed among these distances:
157 6 0.02
158 141 0.53
159 115 0.43
160 4 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGATCCGGACCGAGGGTTGCGGTAGCAGGATCGACA
GCATGTAGGAGGGACTGGGTCTGTCCCCGGCTTACGCATTCTGCCTCTCCATCGGTTGAGCACCC
GCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:16767474 original size:26 final size:26
Alignment explanation
Indices: 16767438--16767490 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16767428 GTTGGCTTAG
16767438 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
16767464 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16767490 G
1 G
16767491 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16767726 original size:195 final size:196
Alignment explanation
Indices: 16767387--16767771 Score: 553
Period size: 195 Copynumber: 2.0 Consensus size: 196
16767377 TACGTATTCT
* **
16767387 GCCTCTCCGATCAGTTGAGCACCCGCACGCTCGTTTCGTGAGTTGGCTTAGGCATACGGAGTTCA
1 GCCTCTCCGATCAGTTGAGCACCCGCACGCTCGTTTCGTGAGTTGACTTAGGCATAAAGAGTTCA
* * *
16767452 TTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGAGACA
66 TCCCATATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGAGACA
*
16767517 GCAGGATCGGCAGCACACA-GGGGGACCAAGCT-GATCCCTGGCTTAG-GCATTCTGCCTCTTCG
131 GCAGGATCGGCAGCACACAGGGGGGACC-AGCTCGATCCCCGGCTT-GCGCATTCTGCCTCTTCG
16767579 ATC
194 ATC
* * *
16767582 GCCTCTCCGATCGGTTGAGCACCCGGACGCTCGTTTCGTGGGTTGACTTAGGCATAAAGAGTTCA
1 GCCTCTCCGATCAGTTGAGCACCCGCACGCTCGTTTCGTGAGTTGACTTAGGCATAAAGAGTTCA
* * * *
16767647 TCCCCA-ATCTAAGCATACGGAGTTCATTCTCAGTCTAAGATCAGACCGGACTGAGGGTTGCGAC
66 T-CCCATATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGAGAC
* * * *
16767711 AGCAGGATTGGCAGCACGCAGGGGGGATCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCT
130 AGCAGGATCGGCAGCACACAGGGGGGACCAGCTCGATCCCCGGCTTGCGCATTCTGCCTCT
16767772 CGAACCGACT
Statistics
Matches: 168, Mismatches: 18, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
195 134 0.80
196 34 0.20
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (196 bp):
GCCTCTCCGATCAGTTGAGCACCCGCACGCTCGTTTCGTGAGTTGACTTAGGCATAAAGAGTTCA
TCCCATATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGAGACA
GCAGGATCGGCAGCACACAGGGGGGACCAGCTCGATCCCCGGCTTGCGCATTCTGCCTCTTCGAT
C
Found at i:16768438 original size:159 final size:159
Alignment explanation
Indices: 16767998--16768440 Score: 392
Period size: 159 Copynumber: 2.8 Consensus size: 159
16767988 CTATCGATCC
* * * *
16767998 TGCTACCGGTCCTACTGCCACAACCCTCGATCCGACTGGGGCTTAGACAAGGAATGAACTCCCTA
1 TGCTACCGATCCCACTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCATA
* * * * * * **
16768063 TGCCTAAGCCAACCCACGAAATGGACGTACGGGTGCTCAACCGATCGGAGAGGCAAAATGTGCAA
66 TGCCTAAGCTAACCCACGAAACGGGCGTGCGGGTGCTCGACCGATCGGAGAGGCATAATGCACAA
** *
16768128 GTCGGGGGTCGACCCGAGTCCCCACTGCG
131 GTCAAGGATCGACCCGAGTCCCCACTGCG
* * * ** * * ** * * ** *
16768157 TGCTATCGATCCTACTACCGTAACTCTCGGTTTGATTCGATCTTAGAC-TGGGAATGAACTCCGT
1 TGCTACCGATCCCACTGCCACAACCCTCGATCCGACTGGGGCTTAGACAT-GGAATGAACTCCAT
* * ** ** *
16768221 ATGCCTAAG-TCAACCCACGAAACGAGCGTGCGGGCGCT-GAGCCGGCCAAAAAGGCATAATGCA
65 ATGCCTAAGCT-AACCCACGAAACGGGCGTGCGGGTGCTCGA-CCGATCGGAGAGGCATAATGCA
* * *
16768284 TAAGTCAAGGATCGACCCGA-TCCCCCTCTGTG
128 CAAGTCAAGGATCGACCCGAGT-CCCCACTGCG
* * *
16768316 TGCTGCC-AGTCCCATTGCCACAACCCTCGATCCGGCTGGGGCTTAGACATGGAATGAACTCCAT
1 TGCTACCGA-TCCCACTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCAT
* * * *
16768380 ATGCCTAAGCTAACCCATGAAACGGGCATGCGGATGCTCGACCGATCGGAGAGACATAATG
65 ATGCCTAAGCTAACCCACGAAACGGGCGTGCGGGTGCTCGACCGATCGGAGAGGCATAATG
16768441 TGCAAGCCGG
Statistics
Matches: 212, Mismatches: 64, Indels: 16
0.73 0.22 0.05
Matches are distributed among these distances:
158 3 0.01
159 205 0.97
160 4 0.02
ACGTcount: A:0.26, C:0.30, G:0.26, T:0.19
Consensus pattern (159 bp):
TGCTACCGATCCCACTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAACTCCATA
TGCCTAAGCTAACCCACGAAACGGGCGTGCGGGTGCTCGACCGATCGGAGAGGCATAATGCACAA
GTCAAGGATCGACCCGAGTCCCCACTGCG
Found at i:16768544 original size:26 final size:26
Alignment explanation
Indices: 16768515--16768565 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
16768505 CTGGTCTGAT
16768515 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
16768541 CTTAGACTGGGGATGAACTCTGTAT
1 CTTAGACTGGGAATGAACTCTGTAT
16768566 ACCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:16770114 original size:26 final size:26
Alignment explanation
Indices: 16770075--16770128 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
16770065 AATCCAATCT
* *
16770075 TAGACTGAGAATGAACTCCGTATGCC
1 TAGACTAAGAATGAACTCCGCATGCC
*
16770101 TAGACTAAGGATGAACTCCGCATGCC
1 TAGACTAAGAATGAACTCCGCATGCC
16770127 TA
1 TA
16770129 AGTCAACCCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.22, T:0.22
Consensus pattern (26 bp):
TAGACTAAGAATGAACTCCGCATGCC
Found at i:16770993 original size:26 final size:25
Alignment explanation
Indices: 16770953--16771004 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
16770943 CCGGTCCGAT
16770953 CTTAGATAGGAATGAACTCTGTATG
1 CTTAGATAGGAATGAACTCTGTATG
*
16770978 CTTAGACTAGGGATGAACTCTGTATG
1 CTTAGA-TAGGAATGAACTCTGTATG
16771004 C
1 C
16771005 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 6 0.24
26 19 0.76
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (25 bp):
CTTAGATAGGAATGAACTCTGTATG
Found at i:16772179 original size:26 final size:26
Alignment explanation
Indices: 16772150--16772202 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16772140 CCGGTCTGAT
16772150 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * * *
16772176 CTTAGATTGGGGATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16772202 C
1 C
16772203 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16773054 original size:26 final size:26
Alignment explanation
Indices: 16773018--16773070 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16773008 CTGGTCTGAT
16773018 CTTAGACTGGGAATGAACCCCATATG
1 CTTAGACTGGGAATGAACCCCATATG
* * *
16773044 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACCCCATATG
16773070 C
1 C
16773071 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCATATG
Found at i:16773233 original size:514 final size:514
Alignment explanation
Indices: 16772609--16773603 Score: 1167
Period size: 514 Copynumber: 1.9 Consensus size: 514
16772599 GGCGGTAAGT
* * * **
16772609 CGATCGGAGAGGCAGAATGCGTAAGCTAGGGATTGGCCCGATCCCGCCCTGCATGCTGTCGATCC
1 CGATCGAAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCCCGCCCTGCATGCTGTCGATCC
** * * * * * **
16772674 TGCTGTGCAACCCTCGGTTTGGTCCGATCGTAGATAGGGAATGAACTCCGTATGCCTAAGTTAAC
66 AACTATGCAACCCTCGGTTCGATCCAATCGTAGATAGGGAATGAACTCCATATGCCTAAGCCAAC
* * * **
16772739 CCACGAAATGAGCATGCGGGTACTTAGCCGACCA-AAGAGGCATAATACGCAAGTCGGGGATCAG
131 CCACGAAATGAGCATGCGGGCACTCAGCCGACCAGAA-AGGCAGAATACGCAAGTCAAGGATC-G
* * * * * *
16772803 -CCCGGTCCCACTCTGTGTGCTGCTGGTCCCGCTGCCACACCCCTCGGTCCGGCTGGGGCTTAGA
194 TCCCGATCCCACTCTGTGTGCTGCTAGTCCCACTACCACAACCCTCGATCCGGCTGGGGCTTAGA
* * ***
16772867 CATGGAATGAACTCTCTATACCTAAGCCAACCCATGAAACGAGCATGCAAGCACTCAGTCGGTTG
259 CATGGAATGAACTCCCTATACCTAAGCCAACCCATGAAACGAGCATGCAAGCACTCAGCCGACCG
* * * * * * * *
16772932 GATAGGTAGAATGCACGAGCC-GGGCATCGACCCAAACC-CCCTGCATGCTGTCGATCCTACTGT
324 AAGAGGCAGAACGCACAAGCCAGGG-ATCGACCCAAACCTCCATGCATGCTGCCGATCCTACTGC
** * *
16772995 CACAACCCTCGGA-CTGGTCTGATCTTAGACTGGGAATGAACCCCATATGCTTAGACTGGGGATG
388 CACAACCCTC-GATCCAGTCTGATCTTAGACTGGGAATGAACCCCACATGCTTAGACTAGGGATG
16773059 AACTCCGTATGCCTAAGTCAACACATGAAAGGAGTGTGCGAGTGCTGAACCCACCGGAGAGGC
452 AACTCCGTATGCCTAAGTCAACACATGAAAGGAGTGTGCGAGTGCTGAACCCACCGGAGAGGC
* *
16773122 CGATCGAAGAGGCATAATGCGCAAGCCAGGGATCAGCCCGATCCC-CCTCTGCGTGCTGTCGATC
1 CGATCGAAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCCCGCC-CTGCATGCTGTCGATC
* * **
16773186 CAACTATCGCAACTCTCGGTTCGATCCAATCTTAGA-ATGGGAATGAACTTTATATGCCTAAGCC
65 CAACTAT-GCAACCCTCGGTTCGATCCAATCGTAGATA-GGGAATGAACTCCATATGCCTAAGCC
** * * * * *
16773250 AACCCACGAAATGAGGGTGCGGGCGCTCAGTCGATCAGAAAGGTAGAATGCGCAAGTCAAGGATC
128 AACCCACGAAATGAGCATGCGGGCACTCAGCCGACCAGAAAGGCAGAATACGCAAGTCAAGGATC
* * * *
16773315 GTCCCGATCCCACTCTGTGTGCTGCTAGTCCTACTACCATAACCCTCGATCTGGTTGGGGCTTAG
193 GTCCCGATCCCACTCTGTGTGCTGCTAGTCCCACTACCACAACCCTCGATCCGGCTGGGGCTTAG
* * * * ** *
16773380 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAGCCGACC
258 ACATGGAATGAACTCCCTATACCTAAGCCAACCCATGAAACGAGCATGCAAGCACTCAGCCGACC
* **** * *
16773445 GAAGAGGCAGAACGCGCAAGCCAGGGATCGACCTGGTCCTCCATGCATGCTGCCTATCCTGCTGC
323 GAAGAGGCAGAACGCACAAGCCAGGGATCGACCCAAACCTCCATGCATGCTGCCGATCCTACTGC
* * ** *
16773510 CACAACCTTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCTGCATGTTTAGACTAGGGATGA
388 CACAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACCCCACATGCTTAGACTAGGGATGA
*
16773575 ACTCCGTATGCCTAAGTCAACCCATGAAA
453 ACTCCGTATGCCTAAGTCAACACATGAAA
16773604 CAAGCATGCG
Statistics
Matches: 395, Mismatches: 79, Indels: 14
0.81 0.16 0.03
Matches are distributed among these distances:
512 2 0.01
513 60 0.15
514 227 0.57
515 106 0.27
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (514 bp):
CGATCGAAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCCCGCCCTGCATGCTGTCGATCC
AACTATGCAACCCTCGGTTCGATCCAATCGTAGATAGGGAATGAACTCCATATGCCTAAGCCAAC
CCACGAAATGAGCATGCGGGCACTCAGCCGACCAGAAAGGCAGAATACGCAAGTCAAGGATCGTC
CCGATCCCACTCTGTGTGCTGCTAGTCCCACTACCACAACCCTCGATCCGGCTGGGGCTTAGACA
TGGAATGAACTCCCTATACCTAAGCCAACCCATGAAACGAGCATGCAAGCACTCAGCCGACCGAA
GAGGCAGAACGCACAAGCCAGGGATCGACCCAAACCTCCATGCATGCTGCCGATCCTACTGCCAC
AACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACCCCACATGCTTAGACTAGGGATGAACT
CCGTATGCCTAAGTCAACACATGAAAGGAGTGTGCGAGTGCTGAACCCACCGGAGAGGC
Found at i:16774857 original size:26 final size:26
Alignment explanation
Indices: 16774820--16774870 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16774810 TGGTTCGATC
*
16774820 TTAGACTGGGAATGAACTCCGTATGT
1 TTAGACTGGGAATGAACTCCATATGT
16774846 TTAGACAT-GGAATGAACTCCATATG
1 TTAGAC-TGGGAATGAACTCCATATG
16774871 CCCAAGCCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGT
Found at i:16775951 original size:160 final size:156
Alignment explanation
Indices: 16775554--16776059 Score: 443
Period size: 160 Copynumber: 3.2 Consensus size: 156
16775544 AACTCTGTAT
* * * *
16775554 GCTTAGACATGGAATGAACACCGTATGCCTAAGCCAACCCACGAAATGAGCATGT-GGAAGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCA-CTCA
* * * *
16775618 ATCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATTGACCCGATCCACCCCCTACGTGCTATCGA
65 GTCGATCGGAGAGGCA-AATGCACAAGCCAGGGATCGACCCGAT---CCCCCTACGTGCTATCGA
*** *
16775683 TCCTGCTATGACAACCCTCAGTCCGGTCTGA
126 TCCTGCTGCCACAACCCTCAGTCCAGTCTGA
* * * ** *
16775714 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGT-TCGGGCGTTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGT-GGGCACTC
* ** * * *
16775777 AGCCGA-CTGGAGAGGCATAATGCACAAGCTGGGGATCGACCTGATCCCCTTTCTGCGTGCTGTC
64 AGTCGATC-GGAGAGGCA-AATGCACAAGCCAGGGATCGACCCGATCCCC---CTACGTGCTATC
* *
16775841 GATCCTGCTGCCACAACCCTCAGTCTAG-CTGGG
124 GATCCTGCTGCCACAACCCTCAGTCCAGTCT-GA
* * * *
16775874 GCTTAGACATGGAATAAACTCCCTATGCCTAAGGCAACCCACAAAAC-AGGCGTGTGGGCACTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-GCGTGTGGGCACTCA
* * *
16775938 GTCGATCGGAGAGGCAGATAGCACAAGCCAAGGATC-AGCCCGGTTCCCCCTACGTGCTATCGAT
65 GTCGATCGGAGAGGCAAAT-GCACAAGCCAGGGATCGA-CCC-GATCCCCCTACGTGCTATCGAT
** * *
16776002 CCTGCTGCCACAACCCTTGGTTCGGTCTGA
127 CCTGCTGCCACAACCCTCAGTCCAGTCTGA
**
16776032 TATTAGAC-TGGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
16776060 TTAGACTGGG
Statistics
Matches: 274, Mismatches: 55, Indels: 36
0.75 0.15 0.10
Matches are distributed among these distances:
157 5 0.02
158 56 0.20
159 11 0.04
160 191 0.70
161 11 0.04
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGCACTCAG
TCGATCGGAGAGGCAAATGCACAAGCCAGGGATCGACCCGATCCCCCTACGTGCTATCGATCCTG
CTGCCACAACCCTCAGTCCAGTCTGA
Found at i:16776084 original size:26 final size:26
Alignment explanation
Indices: 16776034--16776085 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16776024 CGGTCTGATA
*
16776034 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCATATGC
* *
16776060 TTAGACTGGGGATGAACTCTATATGC
1 TTAGACTGGGAATGAACTCCATATGC
16776086 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:16777528 original size:26 final size:26
Alignment explanation
Indices: 16777499--16777548 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
16777489 CTGGTTCGAT
16777499 CTTAGACTGAGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCTGTATG
* * *
16777525 CTTAGATTGGGGATGAACTCTGTA
1 CTTAGACTGAGAATGAACTCTGTA
16777549 AGCCTAAGTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.28, C:0.14, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCTGTATG
Found at i:16778271 original size:26 final size:26
Alignment explanation
Indices: 16778220--16778272 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16778210 TGCTCAAACT
**
16778220 CTTAGACTGGAAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCCATATG
16778246 CTTAGACATGG-AATGAACTCCATATG
1 CTTAGAC-TGGAAATGAACTCCATATG
16778272 C
1 C
16778273 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCATATG
Found at i:16778447 original size:26 final size:26
Alignment explanation
Indices: 16778404--16778456 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16778394 TTGGTCTGAT
16778404 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
*
16778430 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAAAGAACTCCGTATG
16778456 C
1 C
16778457 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:16778818 original size:159 final size:158
Alignment explanation
Indices: 16778429--16778892 Score: 360
Period size: 159 Copynumber: 2.9 Consensus size: 158
16778419 AACTCCGTAT
* * * * * *
16778429 GCTTAGAC-TAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCATTCGGGCGCTCA
* * * * * * * * *** * * ** *
16778493 GTCGATCGGAGAGGCAAAATGCGTAAGCTGGGGACCGATGCGGTCCCCCCTACGTGCTGTCGATC
65 GCCAACCGGAGAGGCAGAATGCGCAAACTGAGGATCGGCCCGATCCCCCCTACATGCTACCAATC
* ** * ** *
16778558 TTGCCACCACAACCCTCGGTCCGGTCCGA
130 CTGCTGCCACAACCCTCGGTCCAGTTGGG
** * * ** * * *
16778587 TATTGGAC-TGGGAATGAACTCCGTATGCCTAAGTTAACCCATGAAACGAGCATTCGGGTGTTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCATTCGGGCGCTCA
* * * * * * * *
16778651 GTCGACCGGAGAGGCATAATGCGC-AAGTCGATGATCGGCTCGATCCCCCTCTGCATGCTACCAG
65 GCCAACCGGAGAGGCAGAATGCGCAAACT-GAGGATCGGCCCGATCCCCC-CTACATGCTACCAA
16778715 TCCTGCTGCCACAACCCTCGGTCCAGTTGGG
128 TCCTGCTGCCACAACCCTCGGTCCAGTTGGG
* * *
16778746 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGT-GGGCGCTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCAT-TCGGGCGCTCA
* * * * *
16778810 GCCAACCGGAGAGGCAGAATGTGCAAACTGGGGATCGGCCCGGTCCCCCCTACGTGCTGCCAATC
65 GCCAACCGGAGAGGCAGAATGCGCAAACTGAGGATCGGCCCGATCCCCCCTACATGCTACCAATC
*
16778875 CTGCTGCCATAACCCTCG
130 CTGCTGCCACAACCCTCG
16778893 ATCCGGTCTA
Statistics
Matches: 238, Mismatches: 63, Indels: 10
0.77 0.20 0.03
Matches are distributed among these distances:
157 2 0.01
158 115 0.48
159 116 0.49
160 5 0.02
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCATTCGGGCGCTCAG
CCAACCGGAGAGGCAGAATGCGCAAACTGAGGATCGGCCCGATCCCCCCTACATGCTACCAATCC
TGCTGCCACAACCCTCGGTCCAGTTGGG
Found at i:16778934 original size:26 final size:26
Alignment explanation
Indices: 16778905--16778957 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16778895 CCGGTCTAAT
16778905 CTTAGACTGG-GAATGAACTCCGTATG
1 CTTAGACTGGAG-ATGAACTCCGTATG
16778931 CTTAGACTGGAGATGAACTCCGTATG
1 CTTAGACTGGAGATGAACTCCGTATG
16778957 C
1 C
16778958 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAGATGAACTCCGTATG
Found at i:16779131 original size:26 final size:26
Alignment explanation
Indices: 16779102--16779154 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16779092 CCGATCCGAT
*
16779102 CTTAGAC-TGAGAATGAACTCCGTATG
1 CTTAGACATG-GAACGAACTCCGTATG
*
16779128 CTTAGACATGGAACGAACTCTGTATG
1 CTTAGACATGGAACGAACTCCGTATG
16779154 C
1 C
16779155 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAACGAACTCCGTATG
Found at i:16779613 original size:26 final size:26
Alignment explanation
Indices: 16779563--16779613 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
16779553 CCAGTCTGAT
**
16779563 CTTAGACTGGGAATGAACTTTGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
16779589 CTTAGACTAGGG-ATGAACTCCGTAT
1 CTTAGACT-GGGAATGAACTCCGTAT
16779614 GCCTAAGTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:16780321 original size:26 final size:26
Alignment explanation
Indices: 16780283--16780335 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16780273 GGCTCAAACT
16780283 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16780309 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16780335 C
1 C
16780336 CTAAGCAAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16780670 original size:26 final size:26
Alignment explanation
Indices: 16780626--16780678 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
16780616 CCGGTCCAAT
16780626 CTTAAACTGGGAATAAACT-TCGTATG
1 CTTAAACTGGGAATAAACTCT-GTATG
* * *
16780652 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAAACTGGGAATAAACTCTGTATG
16780678 C
1 C
16780679 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAAACTGGGAATAAACTCTGTATG
Found at i:16781359 original size:159 final size:158
Alignment explanation
Indices: 16781133--16781420 Score: 362
Period size: 159 Copynumber: 1.8 Consensus size: 158
16781123 ATGAACTTCG
* * * * * * * * *
16781133 TATGCCTAAGTCAACCCATGAAATGAGTGTTAGGGCACTGAGCTAGCCGGAGAGGCATAATGCGC
1 TATGCCTAAGCCAACCCATGAAACGAGCGTGAGGGCACTCAACCAGCCGAAGAGGCAGAATGCGC
* * * * * *
16781198 AAG-CTGGGGATCGGCTCGGTCCCCCTCTGCGTGCTGCCGATCCCGCTGCCACAACTCTCGGTCC
66 AAGTC-GAGGATCGGCCCGATCCCCC-CTGCGTGCCGCCGATCCCGCTACCACAACCCTCGGTCC
16781262 GACTGGGGCTTAGACATGGAATGAGTTCCC
129 GACTGGGGCTTAGACATGGAATGAGTTCCC
* * *
16781292 TATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCACTCAACCGGCCGAAGAGGCAGAATGCGC
1 TATGCCTAAGCCAACCCATGAAACGAGCGTGAGGGCACTCAACCAGCCGAAGAGGCAGAATGCGC
* * *
16781357 AAGTCGAGGATCGGCCCGATCCCCCCTGCGTGCCGTCGATCCTGCTATCACAACCCTCGGTCCG
66 AAGTCGAGGATCGGCCCGATCCCCCCTGCGTGCCGCCGATCCCGCTACCACAACCCTCGGTCCG
16781421 GTCCGATCTT
Statistics
Matches: 107, Mismatches: 21, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
158 33 0.31
159 73 0.68
160 1 0.01
ACGTcount: A:0.21, C:0.32, G:0.29, T:0.18
Consensus pattern (158 bp):
TATGCCTAAGCCAACCCATGAAACGAGCGTGAGGGCACTCAACCAGCCGAAGAGGCAGAATGCGC
AAGTCGAGGATCGGCCCGATCCCCCCTGCGTGCCGCCGATCCCGCTACCACAACCCTCGGTCCGA
CTGGGGCTTAGACATGGAATGAGTTCCC
Found at i:16781479 original size:26 final size:26
Alignment explanation
Indices: 16781428--16781480 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16781418 CCGGTCCGAT
*
16781428 CTTAGACTGGGAATGAACATCGTATG
1 CTTAGACTGGGAATGAACATCATATG
*
16781454 CTTAGACTGGGGATGAAC-TCCATATG
1 CTTAGACTGGGAATGAACAT-CATATG
16781480 C
1 C
16781481 CTAAGTCAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACATCATATG
Found at i:16782538 original size:25 final size:26
Alignment explanation
Indices: 16782490--16782539 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 26
16782480 CTGGTCTGAT
*
16782490 CTTAGACTGTGAATGAACTTCGTATG
1 CTTAGACTGTGAATGAACTCCGTATG
*
16782516 CTTAGACTG-GGATGAACTCCGTAT
1 CTTAGACTGTGAATGAACTCCGTAT
16782540 TTCTAAGTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 13 0.59
26 9 0.41
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (26 bp):
CTTAGACTGTGAATGAACTCCGTATG
Found at i:16782749 original size:26 final size:26
Alignment explanation
Indices: 16782711--16782763 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16782701 CTGGTCTGAT
16782711 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16782737 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
16782763 C
1 C
16782764 CAAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16783972 original size:26 final size:26
Alignment explanation
Indices: 16783934--16783986 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16783924 GGCTCAAACT
* *
16783934 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACACCATATG
16783960 CTTAGACAT-GGAATGAACACCATATG
1 CTTAGAC-TGGGAATGAACACCATATG
16783986 C
1 C
16783987 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCATATG
Found at i:16785838 original size:84 final size:83
Alignment explanation
Indices: 16785679--16785841 Score: 193
Period size: 84 Copynumber: 2.0 Consensus size: 83
16785669 ATCGGGAGAG
* **
16785679 GTGTGCTGCAGTTGGGGCAGTCCACCCAAGCCCCTTACGAGACTAGCATGATGGTTAGTGTCAAC
1 GTGTGCTGCAGCTGGGGCAACCCACCCAAGCCCCTTACGAGACTAGCATGATGGTTAGTGTCAAC
*
16785744 CATGTGTGCGGGCAGCTA
66 CATGCGTGCGGGCAGCTA
* ** * * *
16785762 GTGTGCTGCAGCTGGGGTAACCCACCCAAGTCTTCTTGCGGGACTAGCATGAT-GTTGGGTGTCA
1 GTGTGCTGCAGCTGGGGCAACCCACCCAAG-CCCCTTACGAGACTAGCATGATGGTT-AGTGTCA
**
16785826 GTCATGCGTGCGGGCA
64 ACCATGCGTGCGGGCA
16785842 ACCGATACAG
Statistics
Matches: 66, Mismatches: 12, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
83 29 0.44
84 37 0.56
ACGTcount: A:0.18, C:0.25, G:0.33, T:0.24
Consensus pattern (83 bp):
GTGTGCTGCAGCTGGGGCAACCCACCCAAGCCCCTTACGAGACTAGCATGATGGTTAGTGTCAAC
CATGCGTGCGGGCAGCTA
Found at i:16786967 original size:24 final size:24
Alignment explanation
Indices: 16786906--16786960 Score: 92
Period size: 24 Copynumber: 2.3 Consensus size: 24
16786896 ACAAGCAGGA
*
16786906 TGGTCAGTGGACCATGAGCTGCAT
1 TGGTCAGTGGACCATGAGCTACAT
*
16786930 TGGTCAGTGGACCATGAGCTACGT
1 TGGTCAGTGGACCATGAGCTACAT
16786954 TGGTCAG
1 TGGTCAG
16786961 ATGACCACGA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.20, C:0.20, G:0.35, T:0.25
Consensus pattern (24 bp):
TGGTCAGTGGACCATGAGCTACAT
Found at i:16789924 original size:26 final size:26
Alignment explanation
Indices: 16789895--16789947 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16789885 CTGATCTGAT
*
16789895 CTTAAATTGGGAATGAACTCTGTATG
1 CTTAAACTGGGAATGAACTCTGTATG
* *
16789921 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAAACTGGGAATGAACTCTGTATG
16789947 C
1 C
16789948 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCTGTATG
Found at i:16790977 original size:157 final size:159
Alignment explanation
Indices: 16790800--16791088 Score: 359
Period size: 157 Copynumber: 1.8 Consensus size: 159
16790790 TCGGTTGGGG
* * * * * *
16790800 CTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCATGAAATGGGTGTACGGGCGC-CAGC
1 CTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCACGAAACGAGCGTACGAGCGCTCAAC
* * * * * * *
16790864 CAATCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCGGT-CCCCCCTGTGTGCTATCGATCT
66 CAATCGGAGAGGCAGAATGCACAAGCCAGGGATCGACCCAGTCCCCCCCTGCGTGCTATCAATCT
16790928 TGCTATCGCAACCCTCGATCTAGTCTGAT
131 TGCTATCGCAACCCTCGATCTAGTCTGAT
* ** * *
16790957 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGTGCTCAA
1 CTTAGACAT-GGAATGAACTCCCTATGCCTAAACCAACCCACGAAACGAGCGTACGAGCGCTCAA
** *
16791021 CCGGTCGGAGAGGCAGAATGCACAAGCCAGGGATCGACCTAGTCCCCCCCTGCGTGCTATCAATC
65 CCAATCGGAGAGGCAGAATGCACAAGCCAGGGATCGACCCAGTCCCCCCCTGCGTGCTATCAATC
16791086 TTG
130 TTG
16791089 TTGCTGGTCC
Statistics
Matches: 108, Mismatches: 21, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
156 1 0.01
157 48 0.44
158 37 0.34
159 22 0.20
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCCTATGCCTAAACCAACCCACGAAACGAGCGTACGAGCGCTCAAC
CAATCGGAGAGGCAGAATGCACAAGCCAGGGATCGACCCAGTCCCCCCCTGCGTGCTATCAATCT
TGCTATCGCAACCCTCGATCTAGTCTGAT
Found at i:16791511 original size:159 final size:157
Alignment explanation
Indices: 16791153--16791654 Score: 473
Period size: 159 Copynumber: 3.2 Consensus size: 157
16791143 AACTCTATAT
* *
16791153 GCTTAGACATGGAATGAACTCCGTATG-CTAAATCCAACCCATGAAACGAGCGTGCGGGCGATCA
1 GCTTAGACATGGAATGAACTCCGTATGCCT-AAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * **
16791217 G-TCGGTCAGAGAGGCAGAATGCGCAAGCTGGGGA-CTGGCCCGGT-CCCCT-TGCATGCTACCG
65 GCT-GGTCAGAGAGGCAGAATGCGCAAGCTGAGGATC-AGCCC-GTCCCCCTCTGCGTGCTGTCG
* * * * *
16791278 ATCTTGCTACCGCAACCCTCGATCCAGTCTGA
127 ATCCTGCTGCCACAACCCTCGGTCC-GACTGA
* * * * ** * *
16791310 TCTTATAC-TGTGAATGAACTCCGTATGCCTAAGTCAACCCATGAATCGAGCGTTTGGGCTCTGA
1 GCTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * *
16791374 GCTGGTCAGAGAGGCATAATGCGCAAGCTGAGGATCAACCCAGTCCCCCTCTGCGTGCTGTCGGT
65 GCTGGTCAGAGAGGCAGAATGCGCAAGCTGAGGATCAGCCC-GTCCCCCTCTGCGTGCTGTCGAT
* *
16791439 CCCGCTGCCACAACCCTCGGTCCGACTGGG
129 CCTGCTGCCACAACCCTCGGTCCGACT-GA
* * * *
16791469 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGAGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
**** * *
16791534 CCAACCAGAGAGGCAGAATGCGCAAGC-CAGGGATCAGCACGATCCCCC-CTGCGTGCTGTCGAT
66 CTGGTCAGAGAGGCAGAATGCGCAAGCTGA-GGATCAGCCCG-TCCCCCTCTGCGTGCTGTCGAT
* *
16791597 CCTGCTGCCACAACCGTCGGTCCGATCCGA
129 CCTGCTGCCACAACCCTCGGTCCGA-CTGA
* * *
16791627 TCTTAGA-TTGGGAATGAACTTCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
16791655 TTAGACTGGG
Statistics
Matches: 278, Mismatches: 55, Indels: 23
0.78 0.15 0.06
Matches are distributed among these distances:
156 2 0.01
157 84 0.30
158 74 0.27
159 116 0.42
160 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CTGGTCAGAGAGGCAGAATGCGCAAGCTGAGGATCAGCCCGTCCCCCTCTGCGTGCTGTCGATCC
TGCTGCCACAACCCTCGGTCCGACTGA
Found at i:16791664 original size:26 final size:26
Alignment explanation
Indices: 16791628--16791680 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16791618 CCGATCCGAT
* *
16791628 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16791654 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16791680 C
1 C
16791681 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16792274 original size:11 final size:11
Alignment explanation
Indices: 16792258--16792290 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
16792248 CGGTTAGGCT
16792258 CTCCGACGATG
1 CTCCGACGATG
16792269 CTCCGACGATG
1 CTCCGACGATG
*
16792280 CTCCGATGATG
1 CTCCGACGATG
16792291 GTGCCCTGGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.18, C:0.33, G:0.27, T:0.21
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:16792739 original size:26 final size:26
Alignment explanation
Indices: 16792703--16792755 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16792693 CCGATCCGAT
* *
16792703 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16792729 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16792755 C
1 C
16792756 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16792940 original size:26 final size:26
Alignment explanation
Indices: 16792901--16792951 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16792891 AGGTCCTATC
*
16792901 TTAGACTGGAAATGAACTCTGTATGG
1 TTAGACTGGAAATGAACTCCGTATGG
16792927 TTAGACATGG-AATGAACTCCGTATG
1 TTAGAC-TGGAAATGAACTCCGTATG
16792952 CCTAAGCCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGAAATGAACTCCGTATGG
Found at i:16793183 original size:159 final size:158
Alignment explanation
Indices: 16792927--16793467 Score: 514
Period size: 159 Copynumber: 3.4 Consensus size: 158
16792917 CTCTGTATGG
* * * *
16792927 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACTCACGAAACAAGCGTACGGGCGCTTAGTC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTGAGCC
* * * * * * *
16792992 GGCCGGAGAGGTAGAATGCGCATGCTGAGGATCGACCCAATCCCCCTCTGCGTGCTTTCGGTCCC
66 GG-CGAAGAGGAAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCTCTGCGTGCTATCGGTCCT
* * * *
16793057 ACTGCCACAACCCTCGATCCGATCCAATC
130 GCTGCCATAACCCTTGATCCGATCCGATC
* * ** *
16793086 TTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTTTGGGCACTGAGC
1 TTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTGAGC
* * * * * * * *
16793150 CGGTCGAAGAGGCATAATGCTCAAGCTGGGGATCGGCCTGGTCCCCCTCTGCGTGCTGTCGGTCT
65 CGG-CGAAGAGGAAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCTCTGCGTGCTATCGGTCC
* * * **
16793215 TGCTGCCATAACCCTTGGTCC-AGCTGGGGC
129 TGCTGCCATAACCCTTGATCCGATC-CGATC
* * * * *
16793245 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGTGCTCAGCA
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTGAGCC
* * * * * *
16793310 GGCCAGAGAGAAAGAATGCGCAAGCCGGGGATCGACCCGAT-CTCCTCTGCGTGCTATCGATTCT
66 GGCGA-AGAGGAAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCTCTGCGTGCTATCGGTCCT
* * * *
16793374 GCTACCATAAACCTTGATCCGGTCTGATC
130 GCTGCCATAACCCTTGATCCGATCCGATC
* * * * * * *
16793403 TTAGA-TTAGAATAAACTCTGTATGCCTAAGGCAACCCACGAAATGAGCGTTCGGGCGCTGAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTGAGCC
16793467 G
66 G
16793468 ATAGGAGATC
Statistics
Matches: 301, Mismatches: 76, Indels: 12
0.77 0.20 0.03
Matches are distributed among these distances:
157 48 0.16
158 47 0.16
159 205 0.68
160 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (158 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTGAGCC
GGCGAAGAGGAAGAATGCGCAAGCTGGGGATCGACCCGATCCCCCTCTGCGTGCTATCGGTCCTG
CTGCCATAACCCTTGATCCGATCCGATC
Found at i:16794554 original size:158 final size:158
Alignment explanation
Indices: 16794260--16794562 Score: 337
Period size: 158 Copynumber: 1.9 Consensus size: 158
16794250 TTGGTTCGAT
* * * * *
16794260 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTTCGAGCGCTGAGC
1 CTTAGACTGGGAATAAACTCCCTATGCCTAAGCCAACCCACAAAATGAGCGTTCGAGCGCTCAGC
* * ** ** * * * * *
16794325 CGGCCGGAAAGGCATAATGCGCAAGCGGGGATTGGCCCGGTCCCTTTTCGCATGCTGTCAGCTCC
66 CGGCCAGAAAGGCAGAATGCGCAAGCGAAGATCAGCCCAGTCCCCTCTCGCATGCTGACAGATCC
* *
16794390 ATTGCCACAACCCTCAGTCCGGCTGGGG
131 ACTGCCAAAACCCTCAGTCCGGCTGGGG
*
16794418 CTTAGACAT-GGAATAAACTCCCTATGCCTAAGCCAACCCACAAAAT-AG-GTGTACGGGCGCTC
1 CTTAGAC-TGGGAATAAACTCCCTATGCCTAAGCCAACCCACAAAATGAGCGT-T-CGAGCGCTC
* *
16794480 AGCCGGCCAGAGAGGCAGAATGCGCAAGCCGAAGATCAGCCCAGTCCCCTCT-GCATGCT-ACCG
63 AGCCGGCCAGAAAGGCAGAATGCGCAAG-CGAAGATCAGCCCAGTCCCCTCTCGCATGCTGACAG
16794543 ATCCTACTGCCAAAACCCTC
127 ATCC-ACTGCCAAAACCCTC
16794563 GGTCTGATCC
Statistics
Matches: 119, Mismatches: 21, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
156 2 0.02
157 8 0.07
158 92 0.77
159 17 0.14
ACGTcount: A:0.25, C:0.32, G:0.25, T:0.18
Consensus pattern (158 bp):
CTTAGACTGGGAATAAACTCCCTATGCCTAAGCCAACCCACAAAATGAGCGTTCGAGCGCTCAGC
CGGCCAGAAAGGCAGAATGCGCAAGCGAAGATCAGCCCAGTCCCCTCTCGCATGCTGACAGATCC
ACTGCCAAAACCCTCAGTCCGGCTGGGG
Found at i:16795049 original size:501 final size:500
Alignment explanation
Indices: 16794237--16795202 Score: 1244
Period size: 501 Copynumber: 1.9 Consensus size: 500
16794227 ATCCTGCTGT
** * * ** * *
16794237 CGCAACCCTCGGTTTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
1 CGCAACCCTCGGTCCGGTCCGATCTTAGAATGGGAATGAACTCCAAATACCTAAGTCAACACACG
* * ** * *
16794302 AAATGAGCGTTCGAGCGCTGAGCCGGCCGGAAAGGCATAATGCGCAAGCGGGGATTGGCCCGGTC
66 AAATGAGCATTCGAGCACTGAGCCAACCGGAAAGGCATAATGCGCAAGCGAGGATCGGCCCGGTC
* *
16794367 CCTTTTCGCATGCTGTCAGCTCCATTGCCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAAT
131 CCCTTTCGCATGCTGTCAGCTCCACTGCCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAAT
* *
16794432 AAACTCCCTATGCCTAAGCCAACCCACAAAATAGGTGTACGGGCGCTCAGCCGGCCAGAGAGGCA
196 AAACTCCCTATGCCTAAGCCAACCCACAAAATAGGTGAACGGGCGCTCAGCCAGCCAGAGAGGCA
*
16794497 GAATGCGCAAGCCGAAGATCAGCCCAGTCCCCTCTGCATGCTACCGATCCTACTGCCAAAACCCT
261 GAATGCGCAAGCCGAAGATCAGCCCAGTCCCCTCTGCATGCTACCGATCCTACTACCAAAACCCT
* * * * * *
16794562 CGGTCTGATCCGATCTGAGACTAGGAATGAACTCTGTATGCTTAGACTGGGGATGAATTTCGTAT
326 CGATCCGATCCAATCTGAGACTAGGAATGAACTCTGTATGCTTAGACTAGGGATGAACTCCGTAT
* * *
16794627 GCCTAAGTCAACCCATGAAACTAGCGT-ATGGGTGCTCAGCCGACCAAAGAGGCAGAATATGCAA
391 GCCTAAGTCAACCCATGAAACGAGCGTGA-GGATGCTCAGCCGACCAAAGAGGCAGAATACGCAA
*
16794691 GCCGGGGATCGGCTCGACCCCCTCTGCGCGCTGTTGATCCTACTAC
455 GCCAGGGATCGGCTCGACCCCCTCTGCGCGCTGTTGATCCTACTAC
16794737 CGCAACCCTCGGTCCGGTCCGATCTTAGAATGGGAATGAACTCCAAATACCTAAGTCAACACACG
1 CGCAACCCTCGGTCCGGTCCGATCTTAGAATGGGAATGAACTCCAAATACCTAAGTCAACACACG
* *
16794802 AAATGAGCATTC-AGGCACTGAGCCAACCGGAGAGGCATAATGTGCAAGCCGAGGATCGGCCCGG
66 AAATGAGCATTCGA-GCACTGAGCCAACCGGAAAGGCATAATGCGCAAG-CGAGGATCGGCCCGG
* * * * *
16794866 TCCCCCTTT-GTATGCTGTC-GATCCCACTGCCACAACCTTCGGTCCGGTTGGGGCTTAGACATG
129 T-CCCCTTTCGCATGCTGTCAGCT-CCACTGCCACAACCCTCAGTCCGGCTGGGGCTTAGACATG
* * * * *
16794929 GAATGAACTCCCTATGCCTAAGCCAACCCACAAAA-CGGT-AACGCGGGTGCTCAGTCAGCCGGA
192 GAATAAACTCCCTATGCCTAAGCCAACCCACAAAATAGGTGAA--CGGGCGCTCAGCCAGCCAGA
* * * ** * * * * *** *
16794992 GAGGTAGAATGTGCAAGTCGGGGATCGGCTCGGTCCTCCT-TGCGTGCTGTTGATCCTACTACCG
255 GAGGCAGAATGCGCAAGCCGAAGATCAGCCCAGTCC-CCTCTGCATGCTACCGATCCTACTACCA
* * * * *
16795056 CAACCCTCGATCCGATCCAATCTTAGATTGGGAGTGAACTCTGTATGCTTAGACTAGGGATGAAC
319 AAACCCTCGATCCGATCCAATCTGAGACTAGGAATGAACTCTGTATGCTTAGACTAGGGATGAAC
* * *
16795121 TCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGAGGATGCTCAGCCGACTAGAGAGGCAGGAT
384 TCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGAGGATGCTCAGCCGACCAAAGAGGCAGAAT
*
16795186 GCGCAAGCCAGGGATCG
449 ACGCAAGCCAGGGATCG
16795203 AACGGGTGGT
Statistics
Matches: 395, Mismatches: 63, Indels: 15
0.84 0.13 0.03
Matches are distributed among these distances:
499 2 0.01
500 102 0.26
501 281 0.71
502 10 0.03
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.20
Consensus pattern (500 bp):
CGCAACCCTCGGTCCGGTCCGATCTTAGAATGGGAATGAACTCCAAATACCTAAGTCAACACACG
AAATGAGCATTCGAGCACTGAGCCAACCGGAAAGGCATAATGCGCAAGCGAGGATCGGCCCGGTC
CCCTTTCGCATGCTGTCAGCTCCACTGCCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAAT
AAACTCCCTATGCCTAAGCCAACCCACAAAATAGGTGAACGGGCGCTCAGCCAGCCAGAGAGGCA
GAATGCGCAAGCCGAAGATCAGCCCAGTCCCCTCTGCATGCTACCGATCCTACTACCAAAACCCT
CGATCCGATCCAATCTGAGACTAGGAATGAACTCTGTATGCTTAGACTAGGGATGAACTCCGTAT
GCCTAAGTCAACCCATGAAACGAGCGTGAGGATGCTCAGCCGACCAAAGAGGCAGAATACGCAAG
CCAGGGATCGGCTCGACCCCCTCTGCGCGCTGTTGATCCTACTAC
Found at i:16795119 original size:26 final size:26
Alignment explanation
Indices: 16795077--16795129 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16795067 CCGATCCAAT
* *
16795077 CTTAGATTGGGAGTGAACTCTGTATG
1 CTTAGATAGGGAGTGAACTCCGTATG
16795103 CTTAGACTAGGGA-TGAACTCCGTATG
1 CTTAGA-TAGGGAGTGAACTCCGTATG
16795129 C
1 C
16795130 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGATAGGGAGTGAACTCCGTATG
Found at i:16796167 original size:26 final size:26
Alignment explanation
Indices: 16796138--16796190 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16796128 CCGATCCAAT
16796138 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
16796164 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
16796190 C
1 C
16796191 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:16796628 original size:147 final size:147
Alignment explanation
Indices: 16796360--16796781 Score: 366
Period size: 159 Copynumber: 2.8 Consensus size: 147
16796350 ACTCCATATG
* * * *
16796360 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCACCCCATGAAACGAGGGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
16796425 CGGCCAGAGAGGCAAAATGTACAAGTCGGGGATCGGCCTGGTCTCCCCCTGCGTGCTGTCGCAAT
66 CAGCCAGAGAGGCAAAATGTACAAGCCGGGGATCGGCCCGATCTCCCCCTGCGTGCTGTCGCAAT
16796490 CCTCGGTCCGATCCGAT
131 CCTCGGTCCGATCCGAT
* * *
16796507 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
16796571 CCAGTCGGAGAGGCATAATG-AGTAAGCCGGGGATTGGCCCGATC-CCACTCTGTGTGCTACCGG
65 CCAGCCAGAGAGGCAAAATGTA-CAAGCCGGGGATCGGCCCGATCTCC-CCCTGCGTGCT----G
* ** **
16796634 TCCCACTGCCACAATCCTCGGTCCGGTTGGGG
124 T----C-G---CAATCCTCGGTCCGATCCGAT
* * ** * *
16796666 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGTTGGTGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** * *
16796731 CGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATC-CCTCCTGC
66 CAGCCAGAGAGGCAAAATGTACAAGCCGGGGATCGGCCCGATCTCCCCCTGC
16796782 AAGCTACCGA
Statistics
Matches: 215, Mismatches: 43, Indels: 23
0.77 0.15 0.08
Matches are distributed among these distances:
146 4 0.02
147 97 0.45
151 2 0.01
155 1 0.00
156 1 0.00
158 3 0.01
159 106 0.49
160 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.18
Consensus pattern (147 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CAGCCAGAGAGGCAAAATGTACAAGCCGGGGATCGGCCCGATCTCCCCCTGCGTGCTGTCGCAAT
CCTCGGTCCGATCCGAT
Found at i:16796860 original size:26 final size:26
Alignment explanation
Indices: 16796824--16796876 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16796814 CCAATCTGAT
16796824 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
16796850 CTTAGACTGGGGATGAATTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16796876 C
1 C
16796877 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16797051 original size:26 final size:26
Alignment explanation
Indices: 16797000--16797052 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16796990 CTGGTCCGAT
* *
16797000 CTTAGACTGGAAATGAACTTCGTATG
1 CTTAGACTGGAAATGAACTCCATATG
16797026 CTTAGACATGG-AATGAACTCCATATG
1 CTTAGAC-TGGAAATGAACTCCATATG
16797052 C
1 C
16797053 GTAAGCCACC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCATATG
Found at i:16797282 original size:159 final size:157
Alignment explanation
Indices: 16797025--16797547 Score: 500
Period size: 159 Copynumber: 3.3 Consensus size: 157
16797015 AACTTCGTAT
* * * ** * ** *
16797025 GCTTAGACATGGAATGAACTCCATATGCGTAAGCCACCCCATGAAACGAGCATTCGGGCATTGA-
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCGCTCAG
* * * *
16797089 ACCGATCAGAGAGGCATAATGCGCAAGCCGGGGATC-AGCCCGATCCCCCTCTGCGTGCTGTCGG
66 TCAG-CCAGAGAGGCATAATGCGCAAGCC-GGGATCGA-CCCGGTCCCCCTCTGCGTGCTGTCGG
16797153 TCCTGCTGCCACAACCCTCGATTCGGCTAGG
128 TCCTGCTGCCACAACCCTCG-TTCGGCTAGG
*
16797184 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCGCTCAG
* * *
16797249 TCAGCCAGAGAGGCAAAATGCGCAAGCCAGGGATCGACCTGGT-CCCCTCTTGCGTGCTGTCGAT
66 TCAGCCAGAGAGGCATAATGCGCAAGCC-GGGATCGACCCGGTCCCCCTC-TGCGTGCTGTCGGT
** * * *
16797313 CCTGCTATCGCAACCCTCTGTTCGG-TCCGA
129 CCTGCTGCCACAACCCTC-GTTCGGCT-AGG
* ** * * * ** * * *
16797343 TCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGTGTACGGGAGCTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCGCTCA
* * * * *
16797407 GTCAGCC-GAAGAGGCATAATACGCAAGTCGAGGATCGACTCGGTCCCCCTCTGTGTGCTATCGG
65 GTCAGCCAG-AGAGGCATAATGCGCAAGCCG-GGATCGACCCGGTCCCCCTCTGCGTGCTGTCGG
* * * *
16797471 TCCCGCTGCCACAACCATCGGTCCGGCTGGG
128 TCCTGCTGCCACAACCCTC-GTTCGGCTAGG
* *
16797502 GCTTAGACATGGAATGAACTCCCTATGACTAAGGCAACCCACAAAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAA
16797548 TGGGTGTGCG
Statistics
Matches: 295, Mismatches: 58, Indels: 22
0.79 0.15 0.06
Matches are distributed among these distances:
158 10 0.03
159 273 0.93
160 12 0.04
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCGCTCAG
TCAGCCAGAGAGGCATAATGCGCAAGCCGGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGGTCC
TGCTGCCACAACCCTCGTTCGGCTAGG
Found at i:16797549 original size:159 final size:157
Alignment explanation
Indices: 16797095--16797566 Score: 511
Period size: 159 Copynumber: 3.0 Consensus size: 157
16797085 TTGAACCGAT
* * *
16797095 CAGAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGATCCCCCTCTGCGTGCTGTCGGTCCTGCT
1 CAGAGAGGCATAATGCGCAAG-CGAGGATC-GACCGGTCCCCCTCTGCGTGCTGTCGGTCCTGCT
*
16797160 GCCACAACCCTCGATTCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
64 GCCACAACCCTCGGTTCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
* ** *
16797225 CAAAACGGGCATGCGGGCGCTCAGTCAGC
129 CAAAATGGGTGTGCGGGAGCTCAGTCAGC
* * *
16797254 CAGAGAGGCAAAATGCGCAAGCCAGGGATCGACCTGGT-CCCCTCTTGCGTGCTGTCGATCCTGC
1 CAGAGAGGCATAATGCGCAAGCGA-GGATCGACC-GGTCCCCCTC-TGCGTGCTGTCGGTCCTGC
** * * * ** ** *
16797318 TATCGCAACCCTCTGTTCGG-TCCGATCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAAC
63 TGCCACAACCCTCGGTTCGGCT-AGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAAC
* * * *
16797381 CCACGAAATGAGTGTACGGGAGCTGAGTCAGC
126 CCACAAAATGGGTGTGCGGGAGCTCAGTCAGC
* * * *
16797413 C-GAAGAGGCATAATACGCAAGTCGAGGATCGACTCGGTCCCCCTCTGTGTGCTATCGGTCCCGC
1 CAG-AGAGGCATAATGCGCAAG-CGAGGATCGAC-CGGTCCCCCTCTGCGTGCTGTCGGTCCTGC
* * * * *
16797477 TGCCACAACCATCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGACTAAGGCAACCC
63 TGCCACAACCCTCGGTTCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
*
16797542 ACAAAATGGGTGTGCGGGTGCTCAG
128 ACAAAATGGGTGTGCGGGAGCTCAG
16797567 CCGACTGGAG
Statistics
Matches: 252, Mismatches: 50, Indels: 22
0.78 0.15 0.07
Matches are distributed among these distances:
158 13 0.05
159 228 0.90
160 11 0.04
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
CAGAGAGGCATAATGCGCAAGCGAGGATCGACCGGTCCCCCTCTGCGTGCTGTCGGTCCTGCTGC
CACAACCCTCGGTTCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACA
AAATGGGTGTGCGGGAGCTCAGTCAGC
Found at i:16801641 original size:55 final size:55
Alignment explanation
Indices: 16801537--16801641 Score: 156
Period size: 55 Copynumber: 1.9 Consensus size: 55
16801527 CAACACACCA
* *
16801537 GCCACCCACATGTATGGTTGACACCAACCATCATGCTAGTCCCGTAAGGGGATCG
1 GCCACCCACATGCATGGTTGACACCAACCATCATGCTAGTCCCGCAAGGGGATCG
* * **
16801592 GCCACCCGCATGCCTGGTTGACACCAACCATCATGCTAGTCTTGCAAGGG
1 GCCACCCACATGCATGGTTGACACCAACCATCATGCTAGTCCCGCAAGGG
16801642 ACTTGGGTGG
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
55 44 1.00
ACGTcount: A:0.24, C:0.32, G:0.24, T:0.20
Consensus pattern (55 bp):
GCCACCCACATGCATGGTTGACACCAACCATCATGCTAGTCCCGCAAGGGGATCG
Found at i:16803452 original size:26 final size:26
Alignment explanation
Indices: 16803414--16803466 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16803404 GGCTCAAAAT
16803414 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16803440 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
16803466 C
1 C
16803467 GTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16804453 original size:26 final size:26
Alignment explanation
Indices: 16804417--16804469 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16804407 CCGGTTCGAT
* *
16804417 CTTAGACTGGGAATGAATTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16804443 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16804469 C
1 C
16804470 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16804501 original size:502 final size:500
Alignment explanation
Indices: 16803412--16804571 Score: 1291
Period size: 502 Copynumber: 2.3 Consensus size: 500
16803402 GTGGCTCAAA
* * * *
16803412 ATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCGTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGATGAACTCCGTATGCCTAAGTCAAC
* * * * * * * * * *
16803477 CCACGAAACGAGCGTGCGGGCGCTTAATCGGTCGGAGAGGTAGAATGCGCAAGTCGAGGATCAGC
65 CCACGAAATGAGCGTGCGGGTGCTCAGTCGATCGGAGAGGCAAAATACGCAAGCCAAGGATCAGC
* * * * *
16803542 TCGATCCCTCCTACGTTCTATCGATCCTGCTACCGTAACCCTTGGTCCAATCCAATCTTAGACTG
130 CCGATCCCCCCTACGTGCTATCGATCCTGCTACCGCAAACCTTGGTCCAATCCAATCTTAGACTG
* * ** ** * *
16803607 GGAATGAACTTCGTATGCATAAGTTAACCCACGAAACGAGTGTGTGGCCACTGAACCGATCGAAT
195 GGAATGAACTTCGCATGCATAAGTCAACCCACGAAACGAGCATCCGGCCACTGAACCGACCGAAG
* * * *
16803672 AGGCATAATGCGCAAGCCAGGGATCGACCCGATCTCGCTCTACGTGCTGTCAGTCCCACTGCCAC
260 AGGCATAATGCACAAGCCAGGGATCGACCCGATCCCCCTCTACGCGCTGTCAGTCCCACTGCCAC
* *
16803737 AACCATCGGTCCGGCTAGGGCTTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAA
325 AACCATCGATCCGGCTAGGGCTTAGACAAGGAATGAACTCCCTATACCTAAGCCAACCCACGAAA
** *
16803802 CGAGCGTGCAGGCACTCAGCCAGCCGAAGAGGCAGAATGCAAAAGCCGGGGATCGGCCCGGTCCC
390 CGAGCGTGCAGGCACTCAGCCAGCCGAAGAGGCAGAATGCAAAAGCCGGGGATCAACCCGATCCC
* * * *
16803867 CCCTACGTGCTACCGATCTTGCTGTCGCAACCCTCGGTCTGGTCCG
455 CCCTACGTGCTACCGATCCTGCTGCCACAACCCTCGGTCCGGTCCG
* * * **
16803913 ATCTTAGATTGGGAATGAACTCCATATGCATAGACTAGGGATGAACTCTATATGCCTAAGTCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-GGGATGAACTCCGTATGCCTAAGTCAAC
* *
16803978 CCACGAAATGAG-GATGCGGGTGCTCAGTCGATCGGAGAGGCAAAATACGTAAGCCAAGGATCGG
65 CCACGAAATGAGCG-TGCGGGTGCTCAGTCGATCGGAGAGGCAAAATACGCAAGCCAAGGATCAG
* ** * *** **
16804042 CCCGGTCTCCCCCTGTGTGCTATCGATCCTGCTACTGCAAACCTTGGTCTGGTCTGATCTTAGAC
129 CCCGATC-CCCCCTACGTGCTATCGATCCTGCTACCGCAAACCTTGGTCCAATCCAATCTTAGAC
* * * ** *
16804107 TGGGAATGAACTTCGCATGCCTAAGTCAACCCATGAAATGAGCATACCGG-TGCTGAGCCGACCG
193 TGGGAATGAACTTCGCATGCATAAGTCAACCCACGAAACGAGCAT-CCGGCCACTGAACCGACCG
* * * ** * *
16804171 AAGAGGCATGATGCACAAGCCGGGGATCGACCCGGTCCCCCTCTGTGCGCTGTCGGTCTCACTGC
257 AAGAGGCATAATGCACAAGCCAGGGATCGACCCGATCCCCCTCTACGCGCTGTCAGTCCCACTGC
* ** *
16804236 CACAACCCTCGATTTGGCTAGGGCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCACG
322 CACAACCATCGATCCGGCTAGGGCTTAGACAAGGAATGAACTCCCTATACCTAAGCCAACCCACG
* * * ** * * * *
16804301 AAACGGGTGTGCGGGTGCT-TGGCTGACCGAAGAGGCAGAATGCACAAGCCGGGGATCAACCCGA
387 AAACGAGCGTGCAGGCACTCAGCCAG-CCGAAGAGGCAGAATGCAAAAGCCGGGGATCAACCCGA
** * ** *
16804365 TCCCTTCTACGTGTTGTCGATCCTGCTGCCACAACCCTCGGTCCGGTTCG
451 TCCCCCCTACGTGCTACCGATCCTGCTGCCACAACCCTCGGTCCGGTCCG
* *
16804415 ATCTTAGACTGGGAATGAATTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-GGGATGAACTCCGTATGCCTAAGTCAAC
* * * * * * * ** *
16804480 CCATGAAATAAGCGTGCGGGTGCTCAGTTGATCGAAGAGGCATAATGCACAAGCCGGGGATCAGT
65 CCACGAAATGAGCGTGCGGGTGCTCAGTCGATCGGAGAGGCAAAATACGCAAGCCAAGGATCAGC
* * * *
16804545 CCGGTCCCCTTCTGCATGCTATCGATC
130 CCGATCCCC-CCTACGTGCTATCGATC
16804572 TCGCAGCCGA
Statistics
Matches: 541, Mismatches: 111, Indels: 13
0.81 0.17 0.02
Matches are distributed among these distances:
500 2 0.00
501 115 0.21
502 421 0.78
503 3 0.01
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (500 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGATGAACTCCGTATGCCTAAGTCAACC
CACGAAATGAGCGTGCGGGTGCTCAGTCGATCGGAGAGGCAAAATACGCAAGCCAAGGATCAGCC
CGATCCCCCCTACGTGCTATCGATCCTGCTACCGCAAACCTTGGTCCAATCCAATCTTAGACTGG
GAATGAACTTCGCATGCATAAGTCAACCCACGAAACGAGCATCCGGCCACTGAACCGACCGAAGA
GGCATAATGCACAAGCCAGGGATCGACCCGATCCCCCTCTACGCGCTGTCAGTCCCACTGCCACA
ACCATCGATCCGGCTAGGGCTTAGACAAGGAATGAACTCCCTATACCTAAGCCAACCCACGAAAC
GAGCGTGCAGGCACTCAGCCAGCCGAAGAGGCAGAATGCAAAAGCCGGGGATCAACCCGATCCCC
CCTACGTGCTACCGATCCTGCTGCCACAACCCTCGGTCCGGTCCG
Found at i:16806440 original size:159 final size:156
Alignment explanation
Indices: 16806011--16806451 Score: 381
Period size: 159 Copynumber: 2.8 Consensus size: 156
16806001 GAACTCCGTA
* * * * * *
16806011 GGCTTAGACATGGAATGAACTTCGTACGACTAAGCCAACCCACGAAATGAGCGTGCGGGCGTTCA
1 GGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * ** * **
16806076 GCCAGCCGGAGAGGCAGAATGCGCAAGCCAGGGATTGGCATGGTCCCCCCTACGTGCTGTCAATC
66 GCCAGACAGAGAGGCAGAATACGCAAGCCAGGGATTGGC-CCGT-CCCCCTAAGTGCTACCAATC
** ** * * *
16806141 TTGCTGCTGCCACCCTCAGTCCTGTTTG
129 CCGCTGCCACAACCCTCAGTCCTGCTAG
** * * * *
16806169 ATCTTAGAC-TGGGAATGAACTCCATATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCGCTG
1 GGCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * **
16806233 AGCC-GACCGAAGAGGCATAATACACAAGCC-GAGGATCAGCCCGATCCCCCTATGAGTGCTACC
65 AGCCAGACAG-AGAGGCAGAATACGCAAGCCAG-GGATTGGCCCG-TCCCCCTA--AGTGCTACC
**
16806296 GGTCCCGCTGCCACAACCCTCTA-TCC-GACTAG
125 AATCCCGCTGCCACAACCCTC-AGTCCTG-CTAG
* *
16806328 GGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-AGGCGTGCGGGTGCTC
1 GGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGGCGCTC
* *
16806392 AGCCAGTCAGAGAGGCAGAATACGCAAGCCAGGGATTGGCCCAGTCCCCCTTACGTGCTA
65 AGCCAGACAGAGAGGCAGAATACGCAAGCCAGGGATTGGCCC-GTCCCCC-TAAGTGCTA
16806452 TCGATTTTAC
Statistics
Matches: 221, Mismatches: 48, Indels: 28
0.74 0.16 0.09
Matches are distributed among these distances:
157 13 0.06
158 86 0.39
159 113 0.51
160 9 0.04
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.18
Consensus pattern (156 bp):
GGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
GCCAGACAGAGAGGCAGAATACGCAAGCCAGGGATTGGCCCGTCCCCCTAAGTGCTACCAATCCC
GCTGCCACAACCCTCAGTCCTGCTAG
Found at i:16806517 original size:26 final size:26
Alignment explanation
Indices: 16806488--16806540 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16806478 CCGATCCGAT
*
16806488 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
16806514 CTTAGACTGGGGATAAACTTCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
16806540 C
1 C
16806541 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:16807377 original size:157 final size:154
Alignment explanation
Indices: 16806984--16807390 Score: 359
Period size: 158 Copynumber: 2.6 Consensus size: 154
16806974 TGCAAGCTGA
* * * * * *
16806984 GGATCGACCCGATCCCCCCCTTCGTGCTGTCGATCCTGTTACCCCAACCCTCAGTTCGATCTGAT
1 GGATCGACACGAT--CCCCC-TCATGCTGTCGATCCTGCTACCACAACCCTCGGTTCG-TTTGAT
* * * * ** *
16807049 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAATGAGCGTGCGGGTGCTAAGCC
62 CTTAGACTAGGAATGAACTCCATATGCCCAAGCCAACCCAAAAACGAGCGTGCGGGTGCTAAGCC
* *
16807114 GACCGAAGAAGCATAATGCACAAGTCGG
127 GACCGAAGAAGCAAAATGCACAAGTCAG
* * * * * * **
16807142 GGATCGACACGATCCCCCTCTGAGTGCTGTCGGTCCCGCTGCCACAACCCTCGATCCGGTTGGGG
1 GGATCGACACGATCCCCCTC--A-TGCTGTCGATCCTGCTACCACAACCCTCGGTTC-GTTTGAT
* * * * *
16807207 CTTAGAC-ATGGAATGAACTCCTTATGCCCAAGCCAACCCACAAAACGGGGGTGTGGGTGCTCAG
62 CTTAGACTA-GGAATGAACTCCATATGCCCAAGCCAACCCA-AAAACGAGCGTGCGGGTGCTAAG
* * **
16807271 CC-AGCCGGAGAGGCAAAATGTGCAAGTCAG
125 CCGA-CCGAAGAAGCAAAATGCACAAGTCAG
* * * *
16807301 GGATCGGCTCGGTCCCCCTGCATGCTGTCGATCCTGCTACCGCAACCCTCGGTTCAGTTTGATCT
1 GGATCGACACGATCCCCCT-CATGCTGTCGATCCTGCTACCACAACCCTCGGTTC-GTTTGATCT
16807366 TAGACTAGGAATGAACTCCATATGC
64 TAGACTAGGAATGAACTCCATATGC
16807391 TTAGACTGGG
Statistics
Matches: 195, Mismatches: 45, Indels: 19
0.75 0.17 0.07
Matches are distributed among these distances:
155 2 0.01
156 5 0.03
157 55 0.28
158 77 0.39
159 55 0.28
160 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (154 bp):
GGATCGACACGATCCCCCTCATGCTGTCGATCCTGCTACCACAACCCTCGGTTCGTTTGATCTTA
GACTAGGAATGAACTCCATATGCCCAAGCCAACCCAAAAACGAGCGTGCGGGTGCTAAGCCGACC
GAAGAAGCAAAATGCACAAGTCAG
Found at i:16807405 original size:26 final size:26
Alignment explanation
Indices: 16807364--16807416 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16807354 TCAGTTTGAT
16807364 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
16807390 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
16807416 C
1 C
16807417 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:16808884 original size:513 final size:514
Alignment explanation
Indices: 16807916--16808887 Score: 1231
Period size: 513 Copynumber: 1.9 Consensus size: 514
16807906 AGGGGCTCAA
* **
16807916 AATCTTAGATTAGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAA
1 AATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATCAAATGAACTCTGTATGCCTAAGCCAA
* * * * *
16807981 CCCACGAAACGAGCGTGCGGGCGCTCAATCGACTGGAGAGGCAGAATGTGCAAGCCGGGGATCGA
66 CCCACGAAACAAGCGTGCGGGCGCTCAACCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGA
* * * * *
16808046 CTCGATCCCACCTGTGTGCTATCGATCCTGCTGCTGCAACCCTCAGTTTCGATCCGATCTTAGAG
131 CCCAATCCCACCTGTGTGCTATCAATCCTGCTGCTGCAACCCTCAGTCTCGATCCGATCTTAGAC
* * * **
16808111 TGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTACGGACGTTGACCCGGACGA
196 TCGAAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTACGGACACTGACCCGGACGA
* * ** *
16808176 AGAGGCATAATGCACAAGTCGGGGATTAGCCCGGTCTTTCTCTGCGTGTTGCCGATCCCGCTACC
261 AGAGGCATAATGCACAAGCCGGGGATGAGCCCGGTCTCCCTCTACGTGTTGCCGATCCCGCTACC
16808241 ACAACCCTCGATCCGACTGGGGCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCACAA
326 ACAACCCTCGATCCGACTGGGGCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCACAA
* * * * **
16808306 AACGGGTGTACAGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATC
391 AACCGGCGTACAGGCGCTCAGCCGACCGAAGAGGCAGAATGCACAAGCCACGGATCGACCCGATC
16808371 CCCCCTACGTGCTGTCGATCCTACTGCTGGTTCTACTACTGTAACCCTCAGCCCAGTCT
456 CCCCCTACGTGCTGTCGATCCTACTGCTGGTTCTACTACTGTAACCCTCAGCCCAGTCT
*
16808430 AATCTTAGACTGGGAATGAACTCCGTATGCTTAGACATCAAATGAACTCTGTATGCCTAAGCCAA
1 AATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATCAAATGAACTCTGTATGCCTAAGCCAA
* * * *
16808495 CCTACGAAACAAGCGTGCGGGCGCTCAACCGACCGGAGAGGCAGATTGCGTAAGCC-AGGATCGG
66 CCCACGAAACAAGCGTGCGGGCGCTCAACCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGA
* * * ** *
16808559 CCCAATCCCTCACTGTGTGCTGTCAATCTTGCTG-TCGCAACCCTTGGTCT-GATCTGATCTTAG
131 CCCAATCCCAC-CTGTGTGCTATCAATCCTGCTGCT-GCAACCCTCAGTCTCGATCCGATCTTAG
* * * *
16808622 ACTCGAAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAGCC-GAC
194 ACTCGAAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTACGGACACTGACCCGGAC
*** *
16808686 TGAAGAGGCATAATGTGTAAGCCGGGGATCGA-CCCGAT-TCCCCTCTACGTGTTGCC-AGTCCC
259 -GAAGAGGCATAATGCACAAGCCGGGGAT-GAGCCCGGTCT-CCCTCTACGTGTTGCCGA-TCCC
* * * * * * * *
16808748 GTTGCCACAACCCTC-AGTCTGGCTGGGGCTTAGACATGGAATGAACTCCTTATGCCTATGCTAA
320 GCTACCACAACCCTCGA-TCCGACTGGGGCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAA
* ** * * * * * * *
16808812 GCCATGAAACCGGCGTGCGGGTGCTTAGTCGGCCGAAGAGGTAGAATGCACAAGCCACGGATCGA
384 CCCACAAAACCGGCGTACAGGCGCTCAGCCGACCGAAGAGGCAGAATGCACAAGCCACGGATCGA
16808877 CCCGATCCCCC
449 CCCGATCCCCC
16808888 TTGCATGCTA
Statistics
Matches: 385, Mismatches: 66, Indels: 15
0.83 0.14 0.03
Matches are distributed among these distances:
512 6 0.02
513 238 0.62
514 141 0.37
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.21
Consensus pattern (514 bp):
AATCTTAGACTAGGAATGAACTCCGTATGCTTAGACATCAAATGAACTCTGTATGCCTAAGCCAA
CCCACGAAACAAGCGTGCGGGCGCTCAACCGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGA
CCCAATCCCACCTGTGTGCTATCAATCCTGCTGCTGCAACCCTCAGTCTCGATCCGATCTTAGAC
TCGAAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTACGGACACTGACCCGGACGA
AGAGGCATAATGCACAAGCCGGGGATGAGCCCGGTCTCCCTCTACGTGTTGCCGATCCCGCTACC
ACAACCCTCGATCCGACTGGGGCTTAGACATAGAATGAACTCCCTATGCCTAAGCCAACCCACAA
AACCGGCGTACAGGCGCTCAGCCGACCGAAGAGGCAGAATGCACAAGCCACGGATCGACCCGATC
CCCCCTACGTGCTGTCGATCCTACTGCTGGTTCTACTACTGTAACCCTCAGCCCAGTCT
Found at i:16809691 original size:26 final size:26
Alignment explanation
Indices: 16809640--16809692 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16809630 GGCTCAAGAT
* *
16809640 CTTAGACTGGGAATAAACTTCGTATG
1 CTTAGACTGGGAATAAACTCCATATG
* *
16809666 CTTAGACTTGGAATGAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
16809692 C
1 C
16809693 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:16810665 original size:26 final size:26
Alignment explanation
Indices: 16810636--16810688 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16810626 CCGATTCGAT
16810636 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
16810662 CTTAGACTGGGGATTAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16810688 C
1 C
16810689 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16811469 original size:26 final size:26
Alignment explanation
Indices: 16811417--16811469 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16811407 CCGGTCCGAT
*
16811417 CTTAGACTGGGAATGAACTTCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
* *
16811443 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
16811469 C
1 C
16811470 CTAAGTCATC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:16812075 original size:158 final size:158
Alignment explanation
Indices: 16811765--16812301 Score: 401
Period size: 158 Copynumber: 3.4 Consensus size: 158
16811755 CTGCTACTGG
* *
16811765 TCCTACTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTGAGC
1 TCCTACTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCATATGCCTAAGC
* * *
16811830 CAACCCACGAAACGAACATGTGGGCGCTTAGCCAGTCGAAGAGGCAAAATGGCCAAGCCAGGGAT
66 CAACCCACAAAACGAACATATGGGCGCTAAGCCAGTCGAAGAGGCAAAATGGCCAAGCCAGGGAT
*
16811895 CGGCCCGGTCCCCCCTAAGTGCTATCGA
131 CAGCCCGGTCCCCCCTAAGTGCTATCGA
* * * *
16811923 TCCTACTGTCGTAACCCTCGTTCTGGTCTGATCTTAGACTAGGAATG-ACTCCGTATGCCTAAGT
1 TCCTACTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCATATGCCTAAGC
* * * * * * * **
16811987 TAACCCACAAAACGAGCCTATGGGTGCTAAGTC-TTCCGAAGAGGCATAAT-GCGCAAGCTGGGG
66 CAACCCACAAAACGAACATATGGGCGCTAAGCCAGT-CGAAGAGGCAAAATGGC-CAAGCCAGGG
* ** **
16812050 ATCAGCCTGGTCCCCCTCTGCGTGCTGCCGA
129 ATCAGCCCGGTCCCCC-CTAAGTGCTATCGA
** * * * * * ** *
16812081 TCCCGCAGCCACAACCCTCAGT-TAGGGCTGGGGCTTAGACCT-GGAATGAACTCCCTATGCCTA
1 TCCTACTGTCGCAACCCTCGGTCT-GGTCT-GATCTTAGA-CTAGGAATGAACTCCATATGCCTA
* * ** * ** * * * * * * * **
16812144 AGCCAACCCACGAAATGGGCGTGCGGGTGCTCAGCC-GACTGGAGAGGGAGAAT-ACGCAAGCTG
63 AGCCAACCCACAAAACGAACATATGGGCGCTAAGCCAGTC-GAAGAGGCAAAATGGC-CAAGCCA
* ** **
16812207 GGGATCAGCCCGAT-CCCCCTTCGTGCTGCCGA
126 GGGATCAGCCCGGTCCCCCCTAAGTGCTATCGA
* * *
16812239 TCTTGCTGTTGCAACCCTCGGTCTGGTCTGATCTTAGACT-GGAAATGAACTCCATATG-CTAAG
1 TCCTACTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGG-AATGAACTCCATATGCCTAAG
16812302 ACTAGGGATG
Statistics
Matches: 303, Mismatches: 66, Indels: 22
0.77 0.17 0.06
Matches are distributed among these distances:
156 12 0.04
157 96 0.32
158 104 0.34
159 19 0.06
160 72 0.24
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.21
Consensus pattern (158 bp):
TCCTACTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCATATGCCTAAGC
CAACCCACAAAACGAACATATGGGCGCTAAGCCAGTCGAAGAGGCAAAATGGCCAAGCCAGGGAT
CAGCCCGGTCCCCCCTAAGTGCTATCGA
Found at i:16812701 original size:26 final size:26
Alignment explanation
Indices: 16812663--16812715 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16812653 CTGGTCCAGT
*
16812663 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
16812689 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
16812715 C
1 C
16812716 GTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16813043 original size:159 final size:158
Alignment explanation
Indices: 16812688--16813052 Score: 367
Period size: 158 Copynumber: 2.3 Consensus size: 158
16812678 AACTCTATAT
* * * *
16812688 GCTTAGACATGGAATGAACTCCATATGCGTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAACATACGGGCGCTCAA
* * * * * *
16812753 TCGATTGGAGAGGCAAAATGGGTAAGCTAAGGATCAGCCCAGTCCCCCCTACATGCTATCGATCC
66 CCAATCGAAGAGGCAAAATGGGCAAGCCAAGGATCAGCCCAGTCCCCCCTACATGCTATCGATCC
* * *
16812818 TGCTACCGCAACCCTCAGTCTGATCTGA
131 CGCTACCACAACCCTCAGTCTGAGCTGA
* * * * *
16812846 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACATACGGGCGTTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAACATACGGGCGCTCA
* * * * ** * * * * *
16812910 GCCAATCGAAGAGGCATAATGTGCAAGCCGAGGATCAGCCTGGTCCCCCTCTTCGTGCTGTTGGT
65 ACCAATCGAAGAGGCAAAATGGGCAAGCCAAGGATCAGCCCAGTCCCCC-CTACATGCTATCGAT
** *
16812975 CCCGCTACCACAACCCTTGGT-TCG-GCTGGG
129 CCCGCTACCACAACCCTCAGTCT-GAGCT-GA
* *
16813005 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACG
16813053 GGTGTGCGAG
Statistics
Matches: 166, Mismatches: 36, Indels: 9
0.79 0.17 0.04
Matches are distributed among these distances:
157 1 0.01
158 93 0.56
159 71 0.43
160 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.24, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAACATACGGGCGCTCAA
CCAATCGAAGAGGCAAAATGGGCAAGCCAAGGATCAGCCCAGTCCCCCCTACATGCTATCGATCC
CGCTACCACAACCCTCAGTCTGAGCTGA
Found at i:16813845 original size:514 final size:509
Alignment explanation
Indices: 16812674--16813767 Score: 1216
Period size: 514 Copynumber: 2.2 Consensus size: 509
16812664 TTAGACTGGG
** * * * **
16812674 AATGAACTCTATATGCTTAGACATGGAATGAACTCCATATGCGTAAGCCAACCCACGAAATGAGC
1 AATGAACTCCGTACGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGC
* * ** ** * * ** * * *
16812739 GTACGGGCGCTCAATCGATTGGAGAGGCAAAATGGGTAAGCTA-AGGATCAGCCCAG-TCCCC-C
66 GTACAGGTGCTCAGCCGACAGGAGAAGCAGAATGCATAAGCCAGA-GAT-AGGCCTGATCCCCTC
* *
16812801 CTACATGCTATCGATCCTGCTACCGCAACCCTCAGTCTGATCTGATCTTAGACTGGGAATGAACT
129 CTACGTGCTATCGATCCTGCTACCGCAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACT
* *
16812866 CCGTATGCCTAAGTCAACCCACGAAACGAACATACGGGCGTTGAGCCAATCGAAGAGGCATAATG
194 CCGTATGCCTAAGTCAACCCACGAAACGAACATACGGACGTTGAGCCAACCGAAGAGGCATAATG
* * * * * * *
16812931 TGCAAGCCGAGGATCAGCCTGGTCCCCCTCTTCGTGCTGTTGGTCCCGCTACCACAACCCTTGGT
259 CGCAAGCCGAGGATCAGCCCGATCCCCCTCTGCGTGCTCTCGGTCCCGCTACCACAACCCTCGGT
* * *
16812996 TCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGTGTGCG
324 CCGGCTGGGGCTGAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCG
* ** * *
16813061 AGCGCTCAGCTGGCCAGAGAGGCAGAATGCGTAAGCCGAGGATCAGCTCGATCCCCTCTGCGTGC
389 AGCGCTCAGCTGACCAGAGAGGCAGAATGCACAAGCCGAGGATCAGCCCGATCCCCTCTGCATGC
** * * *
16813126 TACCGATCCTACTGCTAGTCATACTACCACAAACTTTGGCTCGATCTGATCTTAGACTGGG
454 TACCGATCCTA-TGCTAGTCA-ACTA-CAC--ACTTCAGCTCGATCTGATCTGAGACTCGA
* * *
16813187 AATGAACTCCGTACGTTTCGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGC
1 AATGAACTCCGTACGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGC
* * *
16813252 GTGCAGGTGCTCAGCCGACAGGAGAAGCAGAATGCATAAGCCAGAGATAGGCCTGGTCCCTTCCT
66 GTACAGGTGCTCAGCCGACAGGAGAAGCAGAATGCATAAGCCAGAGATAGGCCTGATCCCCTCCT
* * * * * *
16813317 TCGTGCTATCGATCCTGCTGCCGTAACCCTC-GATCCGGTCTGATCTTAGATTGGGAATGAACTT
131 ACGTGCTATCGATCCTGCTACCGCAACCCTCAG-TCCGATCTGATCTTAGACTGGGAATGAACTC
* * * *
16813381 CGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGACGTTGAG-CAAGCCGAAGAGGTATAATG
195 CGTATGCCTAAGTCAACCCACGAAACGAACATACGGACGTTGAGCCAA-CCGAAGAGGCATAATG
* *
16813445 CGCAGGCCG-GGTATC-GACCCGATCCCCCTCTGCGTGCTCTCGGTCCCGCTGCCACAACCCTCG
259 CGCAAGCCGAGG-ATCAG-CCCGATCCCCCTCTGCGTGCTCTCGGTCCCGCTACCACAACCCTCG
*
16813508 GTCCTGCTGGGGCTGAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTG
322 GTCCGGCTGGGGCTGAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTG
* * * * * * *
16813573 CGGGCGCTCAG-TCGATCGGAGAGGCAGAATGCACAAGCTTG-GGATCGGCCCGGTTCCCTCTGC
387 CGAGCGCTCAGCT-GACCAGAGAGGCAGAATGCACAAGC-CGAGGATCAGCCCGATCCCCTCTGC
** * *
16813636 ATGCTGTCGAT-CT-TGCT-GTC-GC-A-AC-CTTCAGTTCGAT-TCGATCTGAGACTCGA
450 ATGCTACCGATCCTATGCTAGTCAACTACACACTTCAGCTCGATCT-GATCTGAGACTCGA
* * *
16813689 AATGAACTCCGTATGCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAG
1 AATGAACTCCGTACGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAG
* *
16813753 TGTACGGGTGCTCAG
65 CGTACAGGTGCTCAG
16813768 TCGATCGGAG
Statistics
Matches: 488, Mismatches: 82, Indels: 33
0.81 0.14 0.05
Matches are distributed among these distances:
501 2 0.00
502 88 0.18
505 2 0.00
507 1 0.00
508 1 0.00
510 3 0.01
511 4 0.01
512 5 0.01
513 103 0.21
514 278 0.57
515 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (509 bp):
AATGAACTCCGTACGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGC
GTACAGGTGCTCAGCCGACAGGAGAAGCAGAATGCATAAGCCAGAGATAGGCCTGATCCCCTCCT
ACGTGCTATCGATCCTGCTACCGCAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCC
GTATGCCTAAGTCAACCCACGAAACGAACATACGGACGTTGAGCCAACCGAAGAGGCATAATGCG
CAAGCCGAGGATCAGCCCGATCCCCCTCTGCGTGCTCTCGGTCCCGCTACCACAACCCTCGGTCC
GGCTGGGGCTGAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTGTGCGAG
CGCTCAGCTGACCAGAGAGGCAGAATGCACAAGCCGAGGATCAGCCCGATCCCCTCTGCATGCTA
CCGATCCTATGCTAGTCAACTACACACTTCAGCTCGATCTGATCTGAGACTCGA
Found at i:16814094 original size:26 final size:26
Alignment explanation
Indices: 16814056--16814108 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16814046 CTGGTCTGAT
16814056 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16814082 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16814108 C
1 C
16814109 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16823873 original size:26 final size:26
Alignment explanation
Indices: 16823835--16823887 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16823825 GGCTCACAAT
16823835 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16823861 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16823887 C
1 C
16823888 CTAAGCTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16824159 original size:159 final size:156
Alignment explanation
Indices: 16823861--16824363 Score: 392
Period size: 159 Copynumber: 3.2 Consensus size: 156
16823851 ACTCCGTATG
* * * * * *
16823861 CTTAGACATGGAATGAAC-TCCGTATGCCTAAGCTAACCCATGAAACGAGCGTGCGAGCGCTCAA
1 CTTAGAC-TGGAATGAACTTCC-TATGCATAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
** * * * * * ** * * *
16823925 CCGACCGGAAAGGTAGAATGTACAAACCGGGGTTCAGCCAGGTCCCCCCCTGCATGCTATC-GAT
64 CC-ATAGGAGAGGCAGAATGCACAAGCCAGGGAACGGCCCGGT-CCCCCCTGCGTGCTA-CGGAT
*** * *
16823989 CCTACTGCCACAACCCTTGGTCTGATTCGAT
126 CCCGTTACCACAACCCTTGGTCTGACTCGAT
* * * *
16824020 CTTAGACTGAGAATGAACTTCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAG-
1 CTTAGACTG-GAATGAACTTCCTATGCATAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* ** * * *
16824084 C-TAGCCGAATAGGC-GTAATGCGTAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGG
65 CATAG--G-AGAGGCAG-AATGCACAAGCCAGGGAACGGCCCGGTCCCCC-CTGCGTGCT-ACGG
* * * **
16824147 -TCCCGTTACCACAACCCTCGGTCCGACTGGGG
124 ATCCCGTTACCACAACCCTTGGTCTGACTCGAT
* *
16824179 CTTAGACATGGAATGAACTTCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAGC
1 CTTAGAC-TGGAATGAACTTCCTATGCATAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGC
**
16824244 CGATAGGAGAGGCAGAATGCACAAGCCAGGGAACGGCCCGGTCCCCCCTGCGTGCTACGGATCTT
65 C-ATAGGAGAGGCAGAATGCACAAGCCAGGGAACGGCCCGGTCCCCCCTGCGTGCTACGGATCCC
* * *
16824309 GTTGCCACAACCCCTGGTCTG-GTCTGAT
129 GTTACCACAACCCTTGGTCTGACTC-GAT
16824337 CTTAGACTGGGAATGAAC-TCCATATGC
1 CTTAGACT-GGAATGAACTTCC-TATGC
16824364 TTCGACGGGG
Statistics
Matches: 273, Mismatches: 53, Indels: 37
0.75 0.15 0.10
Matches are distributed among these distances:
156 1 0.00
157 8 0.03
158 60 0.22
159 193 0.71
160 8 0.03
162 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (156 bp):
CTTAGACTGGAATGAACTTCCTATGCATAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGCC
ATAGGAGAGGCAGAATGCACAAGCCAGGGAACGGCCCGGTCCCCCCTGCGTGCTACGGATCCCGT
TACCACAACCCTTGGTCTGACTCGAT
Found at i:16824754 original size:26 final size:26
Alignment explanation
Indices: 16824716--16824768 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16824706 CGAGTCTAAT
*
16824716 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16824742 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16824768 C
1 C
16824769 CTAGGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16825154 original size:159 final size:157
Alignment explanation
Indices: 16824741--16825156 Score: 419
Period size: 159 Copynumber: 2.6 Consensus size: 157
16824731 AACTCTGTAT
* * * * *
16824741 GCTTAGACATGGAATGAACTCCGTATGCCTAGGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
1 GCTTAGACGTGGAATGAAATCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTC-A
* * * * * * * * *
16824806 CCGGCCAGAGAGGTAGAATGCGCAAGCCAGGGCTCGACCTGGTCCCCTCCTGCGTGCTGTCGATC
65 GC-GACGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCTCCTACGTGCTATCGATC
* *** **
16824871 CTGCTGTGGCAACCCTCTGTCCGATTTGA
129 CCGCTGCCACAACCCTCAATCCGATTTGA
* * * * *
16824900 TCTTAGACAG-GGAAT-AAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCATTG
1 GCTTAGAC-GTGGAATGAAA-TCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTC
* *
16824963 AGCAGACTGAAGAGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCC-CTCTACGTGCTATCG
64 AGC-GAC-GGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCTC-CTACGTGCTATCG
*
16825027 GTCCCGCTGCCACAACCCTCAATCCGA-TTGA
126 ATCCCGCTGCCACAACCCTCAATCCGATTTGA
* *
16825058 GGCTTAGACGTGGAATGAAATCCCTATGCCTAAGCCAACCCATGAAACG-GATGTGCGGGCACTC
1 -GCTTAGACGTGGAATGAAATCCGTATGCCTAAGCCAACCCATGAAACGAG-CGTGCGGGCACTC
*
16825122 AGTCGATCGGAGAGGCAGAATGCGCAACCCGGGGA
64 AG-CGA-CGGAGAGGCAGAATGCGCAAGCCGGGGA
16825157 ACGGCTTGAT
Statistics
Matches: 208, Mismatches: 39, Indels: 20
0.78 0.15 0.07
Matches are distributed among these distances:
158 13 0.06
159 190 0.91
160 5 0.02
ACGTcount: A:0.25, C:0.30, G:0.28, T:0.18
Consensus pattern (157 bp):
GCTTAGACGTGGAATGAAATCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
CGACGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCTCCTACGTGCTATCGATCCC
GCTGCCACAACCCTCAATCCGATTTGA
Found at i:16825969 original size:26 final size:26
Alignment explanation
Indices: 16825932--16825981 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
16825922 CTCAAAATCT
16825932 TAGACTGTGAATGAACTCCGTATGCA
1 TAGACTGTGAATGAACTCCGTATGCA
16825958 TAGACATG-GAATGAACTCCGTATG
1 TAGAC-TGTGAATGAACTCCGTATG
16825982 TCTAAGCCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (26 bp):
TAGACTGTGAATGAACTCCGTATGCA
Found at i:16826828 original size:184 final size:184
Alignment explanation
Indices: 16826638--16827007 Score: 510
Period size: 184 Copynumber: 2.0 Consensus size: 184
16826628 TCCGGCTGGG
* *
16826638 GCTTAGATGTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGC-GGACGCTCA
1 GCTTAGATGTGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACAAGCGTGCTGG-CGCTCA
* * * *
16826702 GTCGATCAGG-GAGGCAGAATACGCAAGCTGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGAT
65 GCCGATC-GGAGAGGCAGAATACACAAGCCGGGGATCGACCCGATCCCCCCTACGTGCTGTCGAT
* *
16826766 CCTACTATAGCAACCCTCGGCCCGATTTGATCTTAGACTGGGAATGAACTCTGTAT
129 CCTACTATAGCAACCCTCGGCCCGATCTGATCTTAGACTGGGAATGAACTCCGTAT
* *
16826822 GCTTAGATGTGGAATGAACTTCATATGCCTAAGCCCACCCATGAAACAAGCGTGCTGGCGCTCAG
1 GCTTAGATGTGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACAAGCGTGCTGGCGCTCAG
* * * * *
16826887 CCGATCGGAGAGGTAGAATGCACAAGCCGGGGATTGACTCGATCCCCCCTACGTGCTGTTGATCC
66 CCGATCGGAGAGGCAGAATACACAAGCCGGGGATCGACCCGATCCCCCCTACGTGCTGTCGATCC
* * * * ** *
16826952 TGCTGTCGCAACCCTTGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
131 TACTATAGCAACCCTCGGCCCGATCTGATCTTAGACTGGGAATGAACTCCGTAT
16827006 GC
1 GC
16827008 CTAAGTCAAC
Statistics
Matches: 162, Mismatches: 22, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
183 2 0.01
184 158 0.98
185 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (184 bp):
GCTTAGATGTGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACAAGCGTGCTGGCGCTCAG
CCGATCGGAGAGGCAGAATACACAAGCCGGGGATCGACCCGATCCCCCCTACGTGCTGTCGATCC
TACTATAGCAACCCTCGGCCCGATCTGATCTTAGACTGGGAATGAACTCCGTAT
Found at i:16826848 original size:26 final size:26
Alignment explanation
Indices: 16826797--16826849 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
16826787 CCGATTTGAT
*
16826797 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
16826823 CTTAGA-TGTGGAATGAACT-TCATATG
1 CTTAGACTG-GGAATGAACTCT-ATATG
16826849 C
1 C
16826850 CTAAGCCCAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:16827250 original size:159 final size:157
Alignment explanation
Indices: 16826822--16827250 Score: 427
Period size: 159 Copynumber: 2.7 Consensus size: 157
16826812 AACTCTGTAT
* * * * *
16826822 GCTTAGATGTGGAATGAACTTCATATGCCTAAGCCCACCCATGAAACAAGCGTGCTGGCGCTCAG
1 GCTTAGA-CTGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACAATCGTGCGGGCGCTCAG
* * * * *
16826887 CC-GATCGGAGAGGTAGAATGCACAAGCCGGGGATTGACTCGATCCCCCCTACGTGCTGTTGATC
65 CCAG-TCGGAGAGGCAGAATGCACAAGTCGGGGATTGACCCGATCCCCCCTACGTACTGTCGATC
* * * *
16826951 CTGCTGTCGCAACCCTTGGTTCGGTCTGA
129 CTGCTGCCACAACCCTCGATTCGGTCTGA
* * * * *
16826980 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGT-GTGCGGGTGCTGA
1 GCTTAGACT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACAA-TCGTGCGGGCGCTCA
* ** * * * * * * *
16827044 GTCAACCGAAGAGGCATAATGCGCAAGTCGGGGATCGACCCAATCCCCCTCTATGTACTGTCGGT
64 GCCAGTCGGAGAGGCAGAATGCACAAGTCGGGGATTGACCCGATCCCCC-CTACGTACTGTCGAT
* *
16827109 -CTCGTTGCCACAACCCTCGA-TCTGG-CTGGG
128 CCT-GCTGCCACAACCCTCGATTC-GGTCT-GA
* * *
16827139 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGATCGTGCGGGCGCTCAG
1 GCTTAGAC-TGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACAATCGTGCGGGCGCTCAG
*
16827204 CCAGTCGGAGAGGCAGAATGCACAAGTCGGGGATTGACCCGGTCCCC
65 CCAGTCGGAGAGGCAGAATGCACAAGTCGGGGATTGACCCGATCCCC
16827251 TTGTGTGCTA
Statistics
Matches: 215, Mismatches: 47, Indels: 17
0.77 0.17 0.06
Matches are distributed among these distances:
157 1 0.00
158 95 0.44
159 118 0.55
160 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (157 bp):
GCTTAGACTGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACAATCGTGCGGGCGCTCAGC
CAGTCGGAGAGGCAGAATGCACAAGTCGGGGATTGACCCGATCCCCCCTACGTACTGTCGATCCT
GCTGCCACAACCCTCGATTCGGTCTGA
Found at i:16827348 original size:26 final size:26
Alignment explanation
Indices: 16827297--16827349 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16827287 CCGATCTGAT
* * *
16827297 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAAACTGGGAATGAACTCCATATG
*
16827323 CTTAAACTGGGGATGAACTCCATATG
1 CTTAAACTGGGAATGAACTCCATATG
16827349 C
1 C
16827350 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCATATG
Found at i:16827544 original size:26 final size:26
Alignment explanation
Indices: 16827506--16827556 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16827496 CCAGTCTGAT
16827506 CTTAGACTGGGAATGAACTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
16827532 CTTAGACAT-GGAATGAACTCCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
16827557 GCCTAAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:16828884 original size:26 final size:26
Alignment explanation
Indices: 16828833--16828885 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16828823 CCGATCCAAT
* *
16828833 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTACATATG
* *
16828859 CTTAGACTGGGGATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACATATG
16828885 C
1 C
16828886 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACATATG
Found at i:16829021 original size:184 final size:182
Alignment explanation
Indices: 16828678--16829217 Score: 584
Period size: 184 Copynumber: 2.9 Consensus size: 182
16828668 TTCAAACTCA
* * * * * *
16828678 TAGACTGGGAATGAACTCTTATGCCTAAGGCAACCCATGAAACGGGCGTGCGGGTGCTCAACCGG
1 TAGACTGGGAATGAACTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAGCCGG
* * * * * * * *
16828743 TCGGAGAGGTAGAATACGTAAGACGAGGAACGGCCCGGTCCCCCCTACGTGCTATCGATCCTACT
66 CCGGAGAGGTAGAATACGCAAGACG-GGGACGGCCCGGTCCCCCCTGCATGCTGTAGATCCTGCT
* *
16828808 G-TCGCAACCCTT-GGTCCGATCCAATCTTAGATTGGGAATGAACTCCATATGCT
130 GCT-GCAA-CCTTCAGTCCGGTCCAATCTTAGATTGGGAATGAACTCCATATGCT
* **
16828861 TAGACTGGGGATGAACTACGTATGCCTAAGTTAACCCATGAAACGAGCGTGCAGGCGCTCAGCCG
1 TAGACTGGGAATGAACT-CGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAGCCG
* * ** * *
16828926 ACCGGAGAGGTAAAATGTGCAAG-CTGGGGATCGGTCCGGTCCCCCCTGCATGCTGTTGATCCTG
65 GCCGGAGAGGTAGAATACGCAAGAC-GGGGA-CGGCCCGGTCCCCCCTGCATGCTGTAGATCCTG
* * * *
16828990 CTGCTGCAACCTTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCT
128 CTGCTGCAACCTTCAGTCCGGTCCAATCTTAGATTGGGAATGAACTCCATATGCT
* * * *
16829045 TAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGAGTGTAGGCGCTCAGCT
1 TAGAC-TGGGAATGAACTC-GTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAGCC
** * *
16829109 GGCCGGAGAGGTAGAATACGCAAGACGGGGACTGGCCCAATCCCCCCCTGCACGCTGTAGATCTT
64 GGCCGGAGAGGTAGAATACGCAAGACGGGGAC-GGCCCGGT-CCCCCCTGCATGCTGTAGATCCT
* * * * *
16829174 GCTACTACAACCCTCAATCTGGTCCAATCTTAGATTGGGAATGA
127 GCTGCTGCAACCTTCAGTCCGGTCCAATCTTAGATTGGGAATGA
16829218 TCTCTGTAGG
Statistics
Matches: 296, Mismatches: 51, Indels: 18
0.81 0.14 0.05
Matches are distributed among these distances:
183 26 0.09
184 210 0.71
185 60 0.20
ACGTcount: A:0.25, C:0.27, G:0.27, T:0.21
Consensus pattern (182 bp):
TAGACTGGGAATGAACTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAGCCGG
CCGGAGAGGTAGAATACGCAAGACGGGGACGGCCCGGTCCCCCCTGCATGCTGTAGATCCTGCTG
CTGCAACCTTCAGTCCGGTCCAATCTTAGATTGGGAATGAACTCCATATGCT
Found at i:16829055 original size:26 final size:26
Alignment explanation
Indices: 16829017--16829069 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
16829007 CCGGTCCGAT
16829017 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
16829043 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
16829069 C
1 C
16829070 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:16829837 original size:196 final size:196
Alignment explanation
Indices: 16829494--16829876 Score: 448
Period size: 196 Copynumber: 1.9 Consensus size: 196
16829484 GATCCTACTA
* *
16829494 TCGCAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCAAATGTTTAGACTGGGGATG
1 TCGCAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCAAATGCTTAGACTGGGAATG
* * * *
16829559 AACTCCGTATGCCTAAGTCTACCGATGAAACGAGCGTACGGGCACTCAGCCCGTTGAAGAGGCAG
66 AACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAGCCCGTCGAAGAGGCAG
* * * *
16829624 AATGCATAAGTCGGGGATCGGCCCGA-TCCCCCTAGCGTGCTACCGATCCTGCTGCTGGTCCTGC
131 AATACACAAGCCGGGGATCGACCCGACTCCCCCT-GCGTGCTACCGATCCTGCTGCTGGTCCTGC
16829688 TG
195 TG
* * ** * *** *
16829690 TCGCAACCCTTGGTCTGATCTGATCTTAGATTGGGAATGAACTCTGTATGCTTAGACAT-TGAAT
1 TCGCAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCAAATGCTTAGAC-TGGGAAT
* * * * *
16829754 GAACTCCGTATGCCTAAGCCAACCCTTGAAACGAGCGTGCGGTG-GCTCAGTCGGTCGAAGAGGC
65 GAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGG-GCACTCAGCCCGTCGAAGAGGC
* * * * *
16829818 AGAATACGCAAGCCGGGGATCGACTCGATCTCCCCCTGTGTGCTATCGATCCTTCTGCT
129 AGAATACACAAGCCGGGGATCGACCCGA-CTCCCCCTGCGTGCTACCGATCCTGCTGCT
16829877 ATAACCCTTA
Statistics
Matches: 154, Mismatches: 29, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
196 126 0.82
197 21 0.14
198 7 0.05
ACGTcount: A:0.23, C:0.27, G:0.26, T:0.23
Consensus pattern (196 bp):
TCGCAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCAAATGCTTAGACTGGGAATG
AACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCACTCAGCCCGTCGAAGAGGCAG
AATACACAAGCCGGGGATCGACCCGACTCCCCCTGCGTGCTACCGATCCTGCTGCTGGTCCTGCT
G
Found at i:16830150 original size:697 final size:682
Alignment explanation
Indices: 16828685--16830340 Score: 1773
Period size: 697 Copynumber: 2.4 Consensus size: 682
16828675 TCATAGACTG
* *
16828685 GGAATGAACT-CTTATGCCTAAGGCAACCCATGAAACGGGCGTGCGGGTGCTCAACCGGTCGGAG
1 GGAATGAACTCCCTATGCCTAA-GCAACCCATGAAAC-GGCGTGCGGGTGCTCAGCCGGTCGGAG
* * *
16828749 AGGTAGAATACGTAAGAC-GAGGA-ACGGCCCGGTCCCCCCTACGTGCTATCGATCCTACTGTCG
64 AGGTAGAATGCGTAAG-CTGGGGATA-GG-CCGGTCCCCCCTGCGTGCTATCGATCCTACTGTCG
* *
16828812 CAACCCTTGGTCCGATCCAATCTTAGATTGGGAATGAACTCCATATGCTTAGACTGGGGATGAAC
126 CAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAAC
* * * * *
16828877 TACGTATGCCTAAGT-TAACCCATGAAACGAGCGTGCAGGCGCTCAGCCGACCGGAGAGGTAAAA
191 TCCGTATGCCTAAGTCT-ACCCATGAAACGAGCGTACAGGCACTCAGCCGACCGAAGAGGCAAAA
** * * *
16828941 TGTGCAAGCTGGGGATCGGTCCGGTCCCCCCTGCATGCTGTTGATCCTGCTGCTGCAACCTTCAG
255 TGCACAAGCTGGGGATCGGCCCGATCCCCCCTGCATGCTGCTGATCCTGCTGCTGCAACCTTCAG
* *
16829006 TCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACATGGAATGAACTCTGTATGCC
320 TCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACATGGAATGAACTCCGTATGCC
* *
16829071 TAAGCCAACCCACGAAACGAGAGTGTAGGCGCTCAGCTGGCCGGAGAGGTAGAATACGCAAGACG
385 TAAGCCAACCCACGAAACGAGAGTGTAGGCGCTCAGCTGGCCGAAGAGGCAGAATACGCAAGACG
* * *
16829136 GGGACTGGCCCAATCCCCCCCTGCACGCTGTAGATCTTGCTACTACAACCCTCAATCTGGTCCAA
450 GGGACTGACCCAATCCCCCCCTGCACGCTATAGATCTTGCTACTACAACCCTCAATCCGGTCCAA
* * * ** * *
16829201 TCTTAGATTGGGAATGATCTCTGTAGGCCTAAGTCAACCCACAAAACGAGCGTTCGGGCACTGAG
515 TCTTAGACTAGGAATGAACTCCATAGGCCTAAGTCAACCCACAAAACAAGCGTTCAGGCACTGAG
* * * * *
16829266 CCGGCCAGAGAGGCATAATGTGTAAGTTGAGGATCGACCCGATCCCCTCTGCGTGCTACCGATTC
580 CCGACCAGAGAGGCATAATGCGAAAGCTGAGGATCGACCCGATCCCCTCTACGTGCTACCGATTC
* *
16829331 CGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACAT
645 CGCTGCCACAACCCTCGATCTGGCTGGGGCTTAGAAAT
* * * ** *
16829369 GGAACGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGTGGGTGCTCAGTAGGTCAGAG
1 GGAATGAACTCCCTATGCCTAAG-CAACCCATGAAACG-GCGTGCGGGTGCTCAGCCGGTCGGAG
* * * ** * * * *
16829434 AGGCAAAATGCGCAAGCTGGGGATAGGCTCACTCCCTCCTGCATGCTGTCGATCCTACTATCGCA
64 AGGTAGAATGCGTAAGCTGGGGATAGGC-CGGTCCCCCCTGCGTGCTATCGATCCTACTGTCGCA
* *
16829499 ACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCAAATGTTTAGACTGGGGATGAACTC
128 ACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTC
* * ** *
16829564 CGTATGCCTAAGTCTACCGATGAAACGAGCGTACGGGCACTCAGCCCG-TTGAAGAGGCAGAATG
193 CGTATGCCTAAGTCTACCCATGAAACGAGCGTACAGGCACTCAG-CCGACCGAAGAGGCAAAATG
* *
16829628 CATAAG-TCGGGGATCGGCCCGATCCCCCTAGCGTGCTACCGATCCTGCTGCTGGTCCTGCTG-T
257 CACAAGCT-GGGGATCGGCCCGATCCCCC---C-TG----C-A---TGCTGCTGATCCTGCTGCT
* * * * *
16829691 CGCAACCCTT-GGTCTGATCTGATCTTAGATTGGGAATGAAC-TCTGTATGCTTAGACATTGAAT
309 -GCAA-CCTTCAGTCCGATCCGATCTTAGACTGGGAATGAACTTC-GTATGCTTAGACATGGAAT
** * * * *
16829754 GAACTCCGTATGCCTAAGCCAACCCTTGAAACGAGCGTG-CGGTGGCTCAG-TCGGTCGAAGAGG
371 GAACTCCGTATGCCTAAGCCAACCCACGAAACGAGAGTGTAGG-CGCTCAGCT-GGCCGAAGAGG
* * * * *** * * *
16829817 CAGAATACGCAAGCCGGGGA-TCGACTCGATCTCCCCCTGTGTGCTATCGATCCTT-CTGCTATA
434 CAGAATACGCAAGACGGGGACT-GACCCAATCCCCCCCTGCACGCTATAGAT-CTTGCTACTACA
* * * *
16829880 ACCCTTAGTCCGGTCCGATCTTAGACTAGGAATGAACTCCATATGCCTAAGTCAACCCACAAAAC
497 ACCCTCAATCCGGTCCAATCTTAGACTAGGAATGAACTCCATAGGCCTAAGTCAACCCACAAAAC
** * * * *
16829945 AAGCGTTCAGGTGCTGAGTCGACCAGAGAGGCATAATGCGAAAGCTGGGGATCGACCTGGTCCCC
562 AAGCGTTCAGGCACTGAGCCGACCAGAGAGGCATAATGCGAAAGCTGAGGATCGACCCGAT-CCC
** * *
16830010 CTCTACGTGCTGTCGGTTCCGCTGCCACAACCTTCGATCTGGCTGGGGCTTAGAAAT
626 CTCTACGTGCTACCGATTCCGCTGCCACAACCCTCGATCTGGCTGGGGCTTAGAAAT
** *
16830067 GGAATGAACTCCCTATGCCTAAGCTAACCCATGAAACAGGCGTGCGGGCACTCAGCCGGTTGGAG
1 GGAATGAACTCCCTATGCCTAAGC-AACCCATGAAAC-GGCGTGCGGGTGCTCAGCCGGTCGGAG
* * * * *
16830132 -GGTAGAATGCGTAAGCTGGGGATCGGCCTGGTCCCCCCTGCGTGCTACCGATCCTGCTGCCACA
64 AGGTAGAATGCGTAAGCTGGGGATAGGCC-GGTCCCCCCTGCGTGCTATCGATCCTACTGTCGCA
* * **
16830196 ACCCTCGGTCCGAT-TAGATCTTAGGCTGGGAATGAACT-CAGTATGCTTAGACTAAGGATGAAC
128 ACCCTCGGTCCGATCCA-ATCTTAGACTGGGAATGAACTCCA-TATGCTTAGACTGGGGATGAAC
* * * * * * * *
16830259 TCCATATGCCTAAGTCAACCCACGAAACGTGCGTGC-GGACGCTCAGTCGACC-AGAGAGGCAAG
191 TCCGTATGCCTAAGTCTACCCATGAAACGAGCGTACAGG-CACTCAGCCGACCGA-AGAGGCAAA
* *
16830322 ATGCGCAAGCCGGGGATCG
254 ATGCACAAGCTGGGGATCG
16830341 AACTGGTGGT
Statistics
Matches: 793, Mismatches: 141, Indels: 63
0.80 0.14 0.06
Matches are distributed among these distances:
684 14 0.02
685 220 0.28
686 5 0.01
688 1 0.00
689 2 0.00
693 1 0.00
694 1 0.00
696 16 0.02
697 420 0.53
698 112 0.14
699 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (682 bp):
GGAATGAACTCCCTATGCCTAAGCAACCCATGAAACGGCGTGCGGGTGCTCAGCCGGTCGGAGAG
GTAGAATGCGTAAGCTGGGGATAGGCCGGTCCCCCCTGCGTGCTATCGATCCTACTGTCGCAACC
CTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGT
ATGCCTAAGTCTACCCATGAAACGAGCGTACAGGCACTCAGCCGACCGAAGAGGCAAAATGCACA
AGCTGGGGATCGGCCCGATCCCCCCTGCATGCTGCTGATCCTGCTGCTGCAACCTTCAGTCCGAT
CCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCC
AACCCACGAAACGAGAGTGTAGGCGCTCAGCTGGCCGAAGAGGCAGAATACGCAAGACGGGGACT
GACCCAATCCCCCCCTGCACGCTATAGATCTTGCTACTACAACCCTCAATCCGGTCCAATCTTAG
ACTAGGAATGAACTCCATAGGCCTAAGTCAACCCACAAAACAAGCGTTCAGGCACTGAGCCGACC
AGAGAGGCATAATGCGAAAGCTGAGGATCGACCCGATCCCCTCTACGTGCTACCGATTCCGCTGC
CACAACCCTCGATCTGGCTGGGGCTTAGAAAT
Found at i:16830987 original size:26 final size:26
Alignment explanation
Indices: 16830958--16831010 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16830948 CCGATCCAAT
16830958 CTTAGACTAGGAATAAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
* * * *
16830984 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
16831010 C
1 C
16831011 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:16831261 original size:197 final size:197
Alignment explanation
Indices: 16830926--16831293 Score: 526
Period size: 197 Copynumber: 1.9 Consensus size: 197
16830916 GTGCTACCGA
* *
16830926 TCTTGCTGCCACAACCCTCGGTCCGATCCAATCTTAGACTAGGAATAAACTCCGTATGCTTAGAT
1 TCTTGCTGCCACAACCCTCGGTCCGATCCAATCTTAGACTAGGAATAAACTCCATATGCTTAGAA
* * **
16830991 TGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAGTCGGCCAG
66 TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAACCGGCCAG
* * *
16831056 AGAGGTAGAATGCGTAAGTCGAGGA-TCGGCCTGGTCCCCCCATGCGTATTGTCGATCCTTTTGC
131 AGAGGTAGAATGCATAAATCGAGGACT-GGCCTAGTCCCCCCATGCGTATTGTCGATCCTTTTGC
16831120 TGG
195 TGG
* * * * * *
16831123 TCTTGCTGTCGCAACCCTTGGTCC-AGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGA
1 TCTTGCTGCCACAACCCTCGGTCCGA-TCCAATCTTAGACTAGGAATAAACTCCATATGCTTAGA
* *
16831187 CAT-GGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAACCGGCC
65 -ATGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAACCGGCC
*
16831251 GGAGAGGTAGAATGCATAAATCGAGGACTGGCCTAGTCCCCCC
129 AGAGAGGTAGAATGCATAAATCGAGGACTGGCCTAGTCCCCCC
16831294 TACTTGGTGT
Statistics
Matches: 150, Mismatches: 18, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
196 1 0.01
197 147 0.98
198 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.26, T:0.23
Consensus pattern (197 bp):
TCTTGCTGCCACAACCCTCGGTCCGATCCAATCTTAGACTAGGAATAAACTCCATATGCTTAGAA
TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAACCGGCCAG
AGAGGTAGAATGCATAAATCGAGGACTGGCCTAGTCCCCCCATGCGTATTGTCGATCCTTTTGCT
GG
Found at i:16831681 original size:158 final size:155
Alignment explanation
Indices: 16831181--16831681 Score: 447
Period size: 158 Copynumber: 3.2 Consensus size: 155
16831171 ACTCCATATG
* * *
16831181 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAAC
1 CTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
16831246 CGGCCGGAGAGGTAGAATGCATAA-ATCGAGGA-CTGGCCTAGTCCCCCCTACTTGGTGTCGATC
66 CGGCCGAAGAGGTAGAATGCACAAGCT-GAGGATC-GGCC-GGTCCCCCCTGCATGCTGTCGATC
*
16831309 TTGCTACTGCAACCCTCGATTCAATCTGAT
128 CTGCTAC-GCAACCCTC-ATTCAATCTGAT
* * * * *
16831339 CATAGAC-TGGGAATAAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGCGCTGAG
1 CTTAGACAT-GGAATAAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * ** ** *
16831403 CCGGCC-AAGGAGGCATAATGCACAAGCTAAAGATCAACCCGGTCCCCTTGTGCATGCTGTCGGT
65 CCGGCCGAA-GAGGTAGAATGCACAAGCTGAGGATC-GGCCGGTCCCC-CCTGCATGCTGTCGAT
* * * * * * **
16831467 CCTGCTGCCACAACCCTCAGTCCAGCGGGG
127 CCTGCT-ACGCAACCCTCATTCAATCTGAT
* * * *
16831497 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACT-AAACGGGCGTGCGGGCACTCAG
1 CTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCA-TGAAACGAGCGTGCGGGCGCTCAG
* * * *
16831561 CCGGCCGAAGACGTAGAATGCACAAGCTGGGGATCGGTCCGGTCCCCCCTGCGTGCTGTTGATCC
65 CCGGCCGAAGAGGTAGAATGCACAAGCTGAGGATCGG-CCGGTCCCCCCTGCATGCTGTCGATCC
16831626 TGCTATCGCAACCCTCAATTCAATCTGAT
129 TGCTA-CGCAACCCTC-ATTCAATCTGAT
*
16831655 CTTAGAC-TGGGAATAAACTCTGTATGC
1 CTTAGACAT-GGAATAAACTCCGTATGC
16831682 TTAGACTGGG
Statistics
Matches: 264, Mismatches: 66, Indels: 26
0.74 0.19 0.07
Matches are distributed among these distances:
157 29 0.11
158 203 0.77
159 31 0.12
160 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.21
Consensus pattern (155 bp):
CTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CGGCCGAAGAGGTAGAATGCACAAGCTGAGGATCGGCCGGTCCCCCCTGCATGCTGTCGATCCTG
CTACGCAACCCTCATTCAATCTGAT
Found at i:16831699 original size:26 final size:26
Alignment explanation
Indices: 16831655--16831707 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16831645 TCAATCTGAT
16831655 CTTAGACTGGGAATAAAC-TCTGTATG
1 CTTAGACTGGGAATAAACTTC-GTATG
* *
16831681 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATAAACTTCGTATG
16831707 C
1 C
16831708 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTTCGTATG
Found at i:16832747 original size:26 final size:26
Alignment explanation
Indices: 16832718--16832770 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16832708 CTGGTCCGAT
* *
16832718 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
16832744 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
16832770 C
1 C
16832771 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:16832966 original size:26 final size:26
Alignment explanation
Indices: 16832915--16832967 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16832905 CCGATCCGAT
*
16832915 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16832941 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
16832967 C
1 C
16832968 CTAAGCTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16833521 original size:22 final size:22
Alignment explanation
Indices: 16833479--16833521 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
16833469 TCAGCTAGCC
* *
16833479 GGAGAGGCAGAATGCGTAAGCT
1 GGAGAGGCAAAATGCGCAAGCT
*
16833501 GGAGAGGCAAAATGTGCAAGC
1 GGAGAGGCAAAATGCGCAAGC
16833522 CGGCGATTGG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.35, C:0.14, G:0.40, T:0.12
Consensus pattern (22 bp):
GGAGAGGCAAAATGCGCAAGCT
Found at i:16834350 original size:26 final size:26
Alignment explanation
Indices: 16834312--16834364 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16834302 GGCTCAAACT
16834312 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
16834338 CTTAGACAT-GGAATGAATTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
16834364 C
1 C
16834365 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16834787 original size:159 final size:159
Alignment explanation
Indices: 16834337--16834789 Score: 620
Period size: 159 Copynumber: 2.8 Consensus size: 159
16834327 AACTCCATAT
* * * *
16834337 GCTTAGACATGGAATGAATTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * ** *
16834402 TCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCTCAACGTGCTGCTGGTC
66 TCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGCGTGCTGCCGGTC
* * *
16834467 CCGCTGCCACAACCCTCGGTCCAGCTGAG
131 CTGCTACCACAACCCTCAGTCCAGCTGAG
* * * *
16834496 GCTTAGACATGGAATGAACTTCCTATGTCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCT-TA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* ** * * * *
16834560 GCTGGTCGGAGAGGCAGAATATGCAAGCCGGGGATCGGCCTGGTCCCCCTCTGCGTGCTGTCGGT
66 TC-GGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGCGTGCTGCCGGT
* *
16834625 CCTGCTACCACAACCCTTAGTCCAGCTGGG
130 CCTGCTACCACAACCCTCAGTCCAGCTGAG
*
16834655 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * * *
16834720 TCGGTTGGAGAGGCAGAATGCGCAAGCCGGGGATCGATCCGATCCCCCCCTGCGTGCTGCCGATC
66 TCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGCGTGCTGCCGGTC
16834785 CTGCT
131 CTGCT
16834790 GTTGGTCCTA
Statistics
Matches: 251, Mismatches: 41, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
158 2 0.01
159 247 0.98
160 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
TCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTGCGTGCTGCCGGTC
CTGCTACCACAACCCTCAGTCCAGCTGAG
Found at i:16835113 original size:26 final size:26
Alignment explanation
Indices: 16835069--16835123 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
16835059 CGGTTCGATA
* *
16835069 TTAGACTGGGAATGAACTCTGTTTGC
1 TTAGACTGGGAATGAACTCCGTGTGC
* *
16835095 TTAGACTGGGGATGGACTCCGTGTGC
1 TTAGACTGGGAATGAACTCCGTGTGC
16835121 TTA
1 TTA
16835124 AGTCAACCCA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.20, C:0.16, G:0.31, T:0.33
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTGTGC
Found at i:16835327 original size:25 final size:26
Alignment explanation
Indices: 16835277--16835328 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16835267 CCGGTCTGAT
16835277 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
16835303 CTTAGACTGGGGATG-ACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
16835328 C
1 C
16835329 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 10 0.43
26 13 0.57
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:16835913 original size:159 final size:159
Alignment explanation
Indices: 16835491--16835914 Score: 415
Period size: 158 Copynumber: 2.7 Consensus size: 159
16835481 GTATGCCTCG
* * * * * *
16835491 TCCCCCTCTGCGTGCTATCGGTCTCGCTACCATAACCCTCGGTCCGGCTGGGGCTTAGACGTGGA
1 TCCCCCTCTGCGTGCTATCGATCCCGCTGCCATAACCCTCGGTCCGGTTAGGGCTTAGACATGGA
* * * *
16835556 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGATCGTACGGGCGCTCAGCCGACTGGAGAGG
66 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCGACTGAAGAGG
*
16835621 TAGAATACATAAATCGAGGATCGACCCAA
131 TAGAATACACAAATCGAGGATCGACCCAA
* * * * * * * * ** ** *
16835650 TCCCCC-CTGCGTGTTGTCAATCCTGCGGCCTTAACCCTTGGTCCGATCCGATCTTAGA-TTGGG
1 TCCCCCTCTGCGTGCTATCGATCCCGCTGCCATAACCCTCGGTCCGGTTAGGGCTTAGACAT-GG
* ** * * * * *
16835713 AATGAACTCCGTATGCCTAAGTTAGCCCACGAAATGAGCGTGTGAGCGCTCAGTCG-GTCGAAGA
65 AATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCGACT-GAAGA
* * * * *
16835777 GGTAGAATCCGC-AAGCTGGGGATCGACCCGA
129 GGTAGAATACACAAATC-GAGGATCGACCCAA
* * *
16835808 TCCCCCTCTGCGTGCTATCGATCCCGCTGCCACAACCCTCGATCTGGTTAGGGCTTAGACATGGA
1 TCCCCCTCTGCGTGCTATCGATCCCGCTGCCATAACCCTCGGTCCGGTTAGGGCTTAGACATGGA
* *
16835873 ATGTACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGC
66 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGC
16835915 AGGCGGTCAG
Statistics
Matches: 201, Mismatches: 59, Indels: 10
0.74 0.22 0.04
Matches are distributed among these distances:
157 5 0.02
158 115 0.57
159 80 0.40
160 1 0.00
ACGTcount: A:0.22, C:0.31, G:0.25, T:0.21
Consensus pattern (159 bp):
TCCCCCTCTGCGTGCTATCGATCCCGCTGCCATAACCCTCGGTCCGGTTAGGGCTTAGACATGGA
ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCGACTGAAGAGG
TAGAATACACAAATCGAGGATCGACCCAA
Found at i:16836302 original size:197 final size:196
Alignment explanation
Indices: 16835960--16836325 Score: 484
Period size: 197 Copynumber: 1.9 Consensus size: 196
16835950 CTCTCAGTTC
* * *
16835960 GGTCCGATCTTGGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAA
1 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGAGATGAACTCCGTATGCCTAA
* * *
16836025 GTCAACCCACGAAACGAGCGTACGGGCGCTCGATCGACCGGAGAGGCAAAATGCATAAGCCAAGG
66 GCCAACCCACGAAACGAGCGTACAGGCGCCCGATCGACCGGAGAGGCAAAATGCATAAGCCAAGG
** * *
16836090 ATCGGCTCGGTCCCCCCTTGCATGCTATCGATCCTGCTGCTAGGCCTACTACCGTAACCCTCGCT
131 ATCAACCCAGTCCCCCC-TGCATGCTATCGATCCTGCTGCTAGGCCTACTACCGTAACCCTCGCT
16836155 TT
195 TT
*
16836157 GGTCCGATCTTAGACTGGGAATGAACTCCGTCTGCTTAGACATGGAG-TGAACTCCGTATGCCTA
1 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGAGATGAACTCCGTATGCCTA
* * * * * * * * *
16836221 AGCCAACCCACGAAACGAGTGTGCAGGTGCCC-AGCTGACGGGAGAGGCAGAATGCGTAAGTCGA
65 AGCCAACCCACGAAACGAGCGTACAGGCGCCCGATC-GACCGGAGAGGCAAAATGCATAAGCCAA
* * *
16836285 GGATCAACCCAGTCCCCCCTGCGTGTTGTCGATCCTGCTGC
129 GGATCAACCCAGTCCCCCCTGCATGCTATCGATCCTGCTGC
16836326 CACAACCCTT
Statistics
Matches: 144, Mismatches: 23, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
196 21 0.15
197 119 0.83
198 4 0.03
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (196 bp):
GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGAGATGAACTCCGTATGCCTAA
GCCAACCCACGAAACGAGCGTACAGGCGCCCGATCGACCGGAGAGGCAAAATGCATAAGCCAAGG
ATCAACCCAGTCCCCCCTGCATGCTATCGATCCTGCTGCTAGGCCTACTACCGTAACCCTCGCTT
T
Found at i:16836479 original size:158 final size:157
Alignment explanation
Indices: 16836191--16836850 Score: 612
Period size: 158 Copynumber: 4.2 Consensus size: 157
16836181 ACTCCGTCTG
* ** * * **
16836191 CTTAGACAT-GGAGTGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCAGGTGCCCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTTAG
* ** * * * * *
16836255 CTGACGGGAGAGGCAGAATGCGTAAGTCGAGGATCAACCCAGTCCCCCCTGCGTGTTGTCGATCC
65 CCGACTAGAGAGGCAGAATGCGCAAGTCGGGGACCGA-CCAGTCCCCCCTGCGTGCTGTCGATCC
* * * * *
16836320 TGCTGCCACAACCCTTGGTCTGGTCCGAT
129 TGCTACCACAACCCTCGATCCGATCCGAT
* *
16836349 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTTAGC
* * ** *
16836414 CGACTGGAGAGGCAGAATGTGCAAG-CTGGGGACCGACTTGTCCCCCCCTGTGTGCTGTCGATCC
66 CGACTAGAGAGGCAGAATGCGCAAGTC-GGGGACCGACCAGT-CCCCCCTGCGTGCTGTCGATCC
* ** **
16836478 TGCTATCGTAACCCTC-AGTCCGATCTAAT
129 TGCTACCACAACCCTCGA-TCCGATCCGAT
* * * * * *
16836507 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCATTCGGGTGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTTAGC
* * * * * * * *
16836572 CGACCAGAGAGGCATAATGCGCAAGCCGGAGATCGGCCCGATCCCCCTCTACGTGCTGTCGATCC
66 CGACTAGAGAGGCAGAATGCGCAAGTCGGGGACCGACCAG-TCCCCC-CTGCGTGCTGTCGATCC
* * *
16836637 TGCTGCCACAACCCTCGATCCGAGT-GGAG
129 TGCTACCACAACCCTCGATCCGA-TCCGAT
* * * * *
16836666 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGTATGCGGGTGCTTTG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTTAG
* * * * * * *
16836730 CAG-GTCAGAAAGGCAGAATACGCAAGTCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATC
65 CCGACT-AGAGAGGCAGAATGCGCAAGTCGGGGA-CCGACCAGTCCCCCCTGCGTGCTGTCGATC
*
16836794 CTGCTACCGCAACCCTCGATCCGATCCGAT
128 CTGCTACCACAACCCTCGATCCGATCCGAT
*
16836824 CTTAGACTGGGAATGAACTCCATATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
16836851 TTGGACTGGG
Statistics
Matches: 407, Mismatches: 81, Indels: 28
0.79 0.16 0.05
Matches are distributed among these distances:
157 7 0.02
158 275 0.68
159 118 0.29
160 7 0.02
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTTAGC
CGACTAGAGAGGCAGAATGCGCAAGTCGGGGACCGACCAGTCCCCCCTGCGTGCTGTCGATCCTG
CTACCACAACCCTCGATCCGATCCGAT
Found at i:16836779 original size:317 final size:316
Alignment explanation
Indices: 16836191--16836850 Score: 735
Period size: 317 Copynumber: 2.1 Consensus size: 316
16836181 ACTCCGTCTG
* * **
16836191 CTTAGACAT-GGAGTGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCAGGTGCCCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCAGGTGCCCAG
* ** * * * *
16836255 CTGACGGGAGAGGCAGAATGCGTAAGTCGAGGATCAACCCAGTCCCCCCTGCGTGTTGTCGATCC
65 CCGACCAGAGAGGCAGAATGCGCAAGCCGAGGATCAACCCAGTCCCCCCTACGTGCTGTCGATCC
* * * * *
16836320 TGCTGCCACAACCCTTGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
130 TGCTGCCACAACCCTCGATCCGGTCCGAGCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAA
* * * ** *
16836385 CCCACGAAACGAGCGTGCGGGCACTTAGCCGACTGGAGAGGCAGAATGTGCAAGCTGGGGACCGA
195 CCCACGAAACGAGCATGCGGGCACTTAGCCGACTAGAAAGGCAGAATACGCAAGCTGGGGACAGA
** * * * *
16836450 CTTGTCCCCCCCTGTGTGCTGTCGATCCTGCTATCGTAACCCTC-AGTCCGATCTAAT
260 CCGGTCCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGA-TCCGATCCAAT
* * * * **
16836507 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCATTCGGGTGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCAGGTGCCCAGC
* **
16836572 CGACCAGAGAGGCATAATGCGCAAGCCG-GAGATCGGCCC-GATCCCCCTCTACGTGCTGTCGAT
66 CGACCAGAGAGGCAGAATGCGCAAGCCGAG-GATCAACCCAG-TCCCCC-CTACGTGCTGTCGAT
*
16836635 CCTGCTGCCACAACCCTCGATCCGAGT-GGAGCTTAGACAT-GGAATGAACTCCCTATGCCTAAG
128 CCTGCTGCCACAACCCTCGATCCG-GTCCGAGCTTAGAC-TGGGAATGAACTCCCTATGCCTAAG
* * ** * * *
16836698 CCAACCCACGAAACGGGTATGCGGGTGCTTTGCAG-GTCAGAAAGGCAGAATACGCAAG-TCGGG
191 CCAACCCACGAAACGAGCATGCGGGCACTTAGCCGACT-AGAAAGGCAGAATACGCAAGCT-GGG
* *
16836761 GATCAGCCCGGT-CCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGATCCGATCCGAT
254 GA-CAGACCGGTCCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGATCCGATCCAAT
*
16836824 CTTAGACTGGGAATGAACTCCATATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
16836851 TTGGACTGGG
Statistics
Matches: 286, Mismatches: 48, Indels: 19
0.81 0.14 0.05
Matches are distributed among these distances:
315 3 0.01
316 90 0.31
317 184 0.64
318 9 0.03
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (316 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCAGGTGCCCAGC
CGACCAGAGAGGCAGAATGCGCAAGCCGAGGATCAACCCAGTCCCCCCTACGTGCTGTCGATCCT
GCTGCCACAACCCTCGATCCGGTCCGAGCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAAC
CCACGAAACGAGCATGCGGGCACTTAGCCGACTAGAAAGGCAGAATACGCAAGCTGGGGACAGAC
CGGTCCCCCCCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGATCCGATCCAAT
Found at i:16844110 original size:26 final size:26
Alignment explanation
Indices: 16844072--16844121 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
16844062 GTCCGATCTC
16844072 AGACTGGGAATGAACTCCATATGCTT
1 AGACTGGGAATGAACTCCATATGCTT
*
16844098 AGACTAGGG-ATGAACTCCGTATGC
1 AGACT-GGGAATGAACTCCATATGC
16844122 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCATATGCTT
Found at i:16844650 original size:26 final size:26
Alignment explanation
Indices: 16844621--16844671 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
16844611 CCGATCCGAT
16844621 CTTAGACTGGGAATGAACTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
*
16844647 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
16844672 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:16844868 original size:26 final size:26
Alignment explanation
Indices: 16844830--16844882 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16844820 TCGATCTGAT
16844830 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16844856 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16844882 C
1 C
16844883 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16845159 original size:552 final size:550
Alignment explanation
Indices: 16843763--16845130 Score: 1290
Period size: 553 Copynumber: 2.5 Consensus size: 550
16843753 TTAGACTGGG
* ** * * * * * * *
16843763 AATGAACTCCGTATACCTAAGTCAACCCACGAAATGAGCGTTCGGGTGCTGAGCCAG-CTGGAGA
1 AATGAACTCCGTATGCCTAAACCAACCCACAAAACGAGCGTACGGGCGCTCAACCAGTC-GAAGA
* * * * * * * * ** *
16843827 GGCATAATATGCAAGCCAAGGATCGGCCTGGTCCC-CCTCTACGTGCTA-CTGGTCTCGTTGCCA
65 GGTAGAATACGTAAGCCAAGGATCGGCCCGATCCCACC-CTACGTGCTATC-GATCCCACTACCA
* * *
16843890 CAACCCTCGATTC-GGCTAGG-GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATG
128 CAACCCTC-AGTCTGGCT-GGAGCTTAGACATGGAATGAACTCTCTATGCCTAAACCAACCCATG
* ** * * * * * * * * * *
16843953 AAAC-AGGCATGTGGGTGCCCAGCCGACCGGAGAGGTAAAATGTGCAAGCCGGGCATCGGCCCGG
191 AAACGA-GCGTACGGGAGCTCAGCCAACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGA
* * * * * ** *
16844017 TCCCCCCT--ATGTGCTGCCGATCCTTCTGCTGCAACCCTCGATTGGGTCCGATCTCAGACTGGG
255 TCCCCCCTGCAT-T--TACCTATCC-TATGCAGTAACCCTCGATCCGATCCGATCTCAGACTGGG
* *
16844080 AATGAACTCCATATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
316 AATGAACTCCATATACTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGC
** ** * * * *
16844145 ATGTGGGTGCTCAGTCGACCAGAGAGGCCGATCGTAGAGGCAGAATGCGCAAGTCGGGGATAGGC
381 ATACGGGCACTCAGTAGACCAGAGAGGCCGATCGGAGAGGCAGAATACGCAAGCCGGGGATAGGC
* *
16844210 CTGATCCCCCCTTGCGTGCTATCGATCCTGCTGCTGGTCCTGCTGCAACAACCTTCGGACCGATC
446 CTGATCCCCCCTTGCGTGCTATCGATCCTACTGCTGGTCCTGCT-CAACAACCCTCGGACCGATC
16844275 CAATCTTAGACTAGGAATGAACTACGTATGCTTAGACATGC
510 CAATCTTAGACTAGGAATGAACTACGTATGCTTAGACATGC
* * * * * *
16844316 AATGAACTCCGTATGCCTAAACCAAGCCACGAAATGAGCGTACGGGTGCTCAACCGGTCGGAGAG
1 AATGAACTCCGTATGCCTAAACCAACCCACAAAACGAGCGTACGGGCGCTCAACCAGTCGAAGAG
* * * * * * * *
16844381 GTAGAATGCGTAAGTCAAGGATCGGCTCGATCCCACTCTACGTGTTGTCGGTCCCGCTACCACAA
66 GTAGAATACGTAAGCCAAGGATCGGCCCGATCCCACCCTACGTGCTATCGATCCCACTACCACAA
* *
16844446 CCCTCAGTCTGGCTGGGGCTTAGACATTGAATGAACTCTCTATGCCTAAACCAACCCATGAAACG
131 CCCTCAGTCTGGCTGGAGCTTAGACATGGAATGAACTCTCTATGCCTAAACCAACCCATGAAACG
* * * * * * ** * *
16844511 GGCGTGCGGGAGCTCAGCCGATCGGAGAGGCAGAATGCGTAAGTTGGGGATCGACCTGGTCCCCC
196 AGCGTACGGGAGCTCAGCCAACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCC
* * * *
16844576 CTGTATTTTCCTATCCTACTGTAGTAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTC
261 CTGCATTTACCTATCCTA-TGCAGTAACCCTCGATCCGATCCGATCTCAGACTGGGAATGAACTC
* * *
16844641 CGTATACTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTACGGGCA
325 CATATACTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCATACGGGCA
* * * *
16844706 CTCAGCTAG-TCGGAGAGGCTGGTCGGAGAGGCAGAATACGCAAGCCGGGGAATA-G-CTCGATC
390 CTCAG-TAGACCAGAGAGGCCGATCGGAGAGGCAGAATACGCAAGCCGGGG-ATAGGCCT-GATC
* * ** **
16844768 CCCCC-TGCGTGCTATCGATCCTACTGTTGGTCCTGCT-ATCGTAACCCTCGGTTCGATCTGATC
452 CCCCCTTGCGTGCTATCGATCCTACTGCTGGTCCTGCTCAAC--AACCCTCGGACCGATCCAATC
* * *
16844831 TTAGACTGGGAATGAACTCCGTATGCTTAGACATGG
515 TTAGACTAGGAATGAACTACGTATGCTTAGACATGC
* * ** ***
16844867 AATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGTGGGCGCTCGGTCAGTCGAAGAG
1 AATGAACTCCGTATGCCTAAACCAACCCACAAAACGAGCGTACGGGCGCTCAACCAGTCGAAGAG
* * * * ** *
16844932 GTAGAATACGTAAGCCATGGATCGGCCCGGTCCC-CCCTGCGTGCTATCGATCCTACTGTCGCAA
66 GTAGAATACGTAAGCCAAGGATCGGCCCGATCCCACCCTACGTGCTATCGATCCCACTACCACAA
* * * * * * ** *
16844996 CCTTCAGTTTGGTTTGATCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAAT
131 CCCTCAGTCTGGCTGGAGCTTAGACAT-GGAATGAACTCTCTATGCCTAAACCAACCCATGAAAC
* * * *
16845060 GAGCGTACGGGCGTTGAGCCAACCAGAGAGGCATAATGCGCAAGCCGGGGATCGACCCGATCCCC
195 GAGCGTACGGGAGCTCAGCCAACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCC
16845125 CTCTGC
260 C-CTGC
16845131 CTGTTACCGG
Statistics
Matches: 665, Mismatches: 134, Indels: 34
0.80 0.16 0.04
Matches are distributed among these distances:
549 3 0.00
550 123 0.18
551 166 0.25
552 156 0.23
553 211 0.32
554 4 0.01
555 2 0.00
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.21
Consensus pattern (550 bp):
AATGAACTCCGTATGCCTAAACCAACCCACAAAACGAGCGTACGGGCGCTCAACCAGTCGAAGAG
GTAGAATACGTAAGCCAAGGATCGGCCCGATCCCACCCTACGTGCTATCGATCCCACTACCACAA
CCCTCAGTCTGGCTGGAGCTTAGACATGGAATGAACTCTCTATGCCTAAACCAACCCATGAAACG
AGCGTACGGGAGCTCAGCCAACCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCC
CTGCATTTACCTATCCTATGCAGTAACCCTCGATCCGATCCGATCTCAGACTGGGAATGAACTCC
ATATACTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCATACGGGCAC
TCAGTAGACCAGAGAGGCCGATCGGAGAGGCAGAATACGCAAGCCGGGGATAGGCCTGATCCCCC
CTTGCGTGCTATCGATCCTACTGCTGGTCCTGCTCAACAACCCTCGGACCGATCCAATCTTAGAC
TAGGAATGAACTACGTATGCTTAGACATGC
Found at i:16846093 original size:26 final size:26
Alignment explanation
Indices: 16846055--16846104 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
16846045 GGCTCAAACT
*
16846055 CTTAGACTAGGAATGAACTTTGTACG
1 CTTAGACTAGGAATGAACTCTGTACG
16846081 CTTAGAC-ATGGAATGAACTCTGTA
1 CTTAGACTA-GGAATGAACTCTGTA
16846105 TGCCTAAGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTACG
Found at i:16846657 original size:26 final size:26
Alignment explanation
Indices: 16846606--16846658 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16846596 CTGATCCGAT
*
16846606 CTTAGACTAGGAATGAACTTTATATG
1 CTTAGACTAGGAATGAACTCTATATG
* * *
16846632 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTATATG
16846658 C
1 C
16846659 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTATATG
Found at i:16847367 original size:26 final size:26
Alignment explanation
Indices: 16847329--16847381 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16847319 GGCTCAAACT
*
16847329 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16847355 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16847381 C
1 C
16847382 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16847700 original size:26 final size:26
Alignment explanation
Indices: 16847671--16847723 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16847661 CTGGTTTGAT
16847671 CTTAGACTAAGAATGAACTCTGTATG
1 CTTAGACTAAGAATGAACTCTGTATG
* *
16847697 CTTAGACTAGGGATGAACTCTGTATG
1 CTTAGACTAAGAATGAACTCTGTATG
16847723 C
1 C
16847724 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAAGAATGAACTCTGTATG
Found at i:16853471 original size:159 final size:158
Alignment explanation
Indices: 16853008--16853506 Score: 488
Period size: 159 Copynumber: 3.1 Consensus size: 158
16852998 GAATGTGACA
* * * *
16853008 CCGGGGATC-AGCCCGATCCCCCTCTACGTGCT-GTCGGTCCCGCTGCCACAACCCTCGATTCGG
1 CCGGGGATCGA-CCCGATCCCCCTCTACGTGCTACT-GGTCCCGCTACCATAACCCTCGGTTCGG
* * * **
16853071 CTGGGGCGTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCATGAAACGGGCATGCGGATG
64 CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG-CAACCCATGAAACGGGCGTGCGGGCG
* *
16853136 CTCAGTCGATTGGAGAGGCAGAATGCGCAAG
128 CTCAGCCGACTGGAGAGGCAGAATGCGCAAG
* * * * * * * * *
16853167 CCGGGGATTGACCCGATCCCCCCCTACGTGTTACCGATCCTGCAACC-TCAACACTCGGTTCGGT
1 CCGGGGATCGACCCGATCCCCCTCTACGTGCTACTGGTCCCGCTACCAT-AACCCTCGGTTCGGC
* ** * * * * * * *
16853231 TTGATCTTAGAC-TGGGAATGAACTCCATATGCATAAGTCAACCCACGAAATGAGTGTGCAGGCG
65 TGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAG-CAACCCATGAAACGGGCGTGCGGGCG
* * * *
16853295 CTGAGCCGACCGAAGAGGCATAATGCGCAAG
128 CTCAGCCGACTGGAGAGGCAGAATGCGCAAG
* * * *
16853326 TCGGGGATCGACCC-AGTCCCCCTCTATGTGCTACTGGTCCCGCTACCATAACCCTCGGTCCAGC
1 CCGGGGATCGACCCGA-TCCCCCTCTACGTGCTACTGGTCCCGCTACCATAACCCTCGGTTCGGC
* *
16853390 TGGGGCTTAGACATAGAATAAACTCCCTATGCCTAAGCAAACCCATGAAACGGGCGTGCGGGCGC
65 TGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGC-AACCCATGAAACGGGCGTGCGGGCGC
* *
16853455 TCAGCCGACTGGAGAGGTAGAATGCACAAG
129 TCAGCCGACTGGAGAGGCAGAATGCGCAAG
*
16853485 CCGAGGATC-AGCCCGATCCCCC
1 CCGGGGATCGA-CCCGATCCCCC
16853507 CTGCGTGTTG
Statistics
Matches: 262, Mismatches: 68, Indels: 20
0.75 0.19 0.06
Matches are distributed among these distances:
158 4 0.02
159 254 0.97
160 4 0.02
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (158 bp):
CCGGGGATCGACCCGATCCCCCTCTACGTGCTACTGGTCCCGCTACCATAACCCTCGGTTCGGCT
GGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCAACCCATGAAACGGGCGTGCGGGCGCTC
AGCCGACTGGAGAGGCAGAATGCGCAAG
Found at i:16853603 original size:26 final size:26
Alignment explanation
Indices: 16853554--16853604 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
16853544 GATCCGATCG
* *
16853554 TAGACTGGGAATGAACTTCGTATGCT
1 TAGACTGGGAATGAACTCCATATGCT
16853580 TAGACTGAGG-ATGAACTCCATATGC
1 TAGACTG-GGAATGAACTCCATATGC
16853605 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCT
Found at i:16853893 original size:171 final size:171
Alignment explanation
Indices: 16853577--16853906 Score: 383
Period size: 171 Copynumber: 1.9 Consensus size: 171
16853567 AACTTCGTAT
* *
16853577 GCTTAGACTGAGGATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTACGGGAACTTAA
1 GCTTAGACTGAGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGAACTTAA
* * * * * * *
16853642 CCGGCCGAAGAGGCATAATGCACAAGCTAGGGATCAACTTGATCCCCCTCTACGTGTTGTGGATC
66 CCGACCGAAGAGGCAGAATGCACAAGCCAGGGATCAACCTGATCCCCCCCTACGTGCTGTCGATC
*
16853707 CCGCTGCCAGTCCTGCTGCCACAACCCTCGATTCTACTGGG
131 CCGCTGCCAGTCCTGCTACCACAACCCTCGATTCTACTGGG
* * * * **
16853748 GCTTAGACATG-GAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCGCTTA
1 GCTTAGAC-TGAGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGAACTTA
*** * * * ** *
16853812 GTTGATCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCTGATCCCCCCCTGCGTGCTGTCGAT
65 ACCGACCGAAGAGGCAGAATGCACAAGCCAGGGATCAACCTGATCCCCCCCTACGTGCTGTCGAT
* ** *
16853877 CCTGCTGCTGGTCCTGCTACCGCAACCCTC
130 CCCGCTGCCAGTCCTGCTACCACAACCCTC
16853907 AGCCCGGTCC
Statistics
Matches: 129, Mismatches: 29, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
171 127 0.98
172 2 0.02
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.20
Consensus pattern (171 bp):
GCTTAGACTGAGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGAACTTAA
CCGACCGAAGAGGCAGAATGCACAAGCCAGGGATCAACCTGATCCCCCCCTACGTGCTGTCGATC
CCGCTGCCAGTCCTGCTACCACAACCCTCGATTCTACTGGG
Found at i:16853971 original size:26 final size:26
Alignment explanation
Indices: 16853920--16853972 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16853910 CCGGTCCGAT
*
16853920 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16853946 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
16853972 C
1 C
16853973 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16855157 original size:26 final size:26
Alignment explanation
Indices: 16855119--16855171 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16855109 CGCTCAAAAT
16855119 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
16855145 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCATATG
16855171 C
1 C
16855172 CTAAGCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:16855447 original size:159 final size:158
Alignment explanation
Indices: 16855145--16855650 Score: 497
Period size: 159 Copynumber: 3.2 Consensus size: 158
16855135 ACTCCATATG
* * ** *
16855145 CTTAGACATGGAATGAACTCCGTATGCCTAAGCTAACCCACAAAATGAGCGTACGGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGC-AACCCACGAAACGAGCGTATAGGCGCTCAGC
* *
16855210 CGGTCGGAGAGGCAGAATGTGCAAGCCGGGGATCGGCCTGATCTCCCCT-TACGTGCTGTCGATC
65 CGGTCGGAGAGGCAGAATGTGCAAGCCGGGGATCGGCCCGATC-CCCCTCTGCGTGCTGTCGATC
* * *
16855274 TTGCTACCGTAACCCTCGGTCCGGTCCGAT
129 CTGCTACCGCAACCCTCGGTCCGGTCAGAT
* * *
16855304 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTTAGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGAGCGTATAGGCGCTCAG
* * * * * *
16855368 CCGATCGGAGAGGCATAATGTGCAGGTCGGGGATCGGCCCGATCCCCCTCTGTGTGCTGCCTG-T
64 CCGGTCGGAGAGGCAGAATGTGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGTC-GAT
* * * * **
16855432 CCCGCTGCCACAACCCTCGGTCTGG-CTAGGG
128 CCTGCTACCGCAACCCTCGGTCCGGTC-AGAT
* * * *
16855463 CTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCACGAAAC-AG-GTGTACGGGCGCTTA
1 CTTAGACATGGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGAGCGTATA--GGCGCTCA
* * * * * *
16855526 GCCGGTCAGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCGGTCCCCC-CTGCGTGCTATCGAT
63 GCCGGTCGGAGAGGCAGAATGTGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGAT
* **
16855590 CCTGCTACCGCAACCATCGGTCCGGTTTGAT
128 CCTGCTACCGCAACCCTCGGTCCGGTCAGAT
* * *
16855621 TTTAG-CCTGGGAATGAACTTCGTATGCCTA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTA
16855651 GATAGGGGAT
Statistics
Matches: 279, Mismatches: 57, Indels: 23
0.78 0.16 0.06
Matches are distributed among these distances:
157 7 0.03
158 62 0.22
159 207 0.74
160 3 0.01
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCAACCCACGAAACGAGCGTATAGGCGCTCAGCC
GGTCGGAGAGGCAGAATGTGCAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGATCCT
GCTACCGCAACCCTCGGTCCGGTCAGAT
Found at i:16856112 original size:26 final size:26
Alignment explanation
Indices: 16856074--16856129 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
16856064 GGCTCAAAAT
*
16856074 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16856100 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16856126 CTTA
1 CTTA
16856130 AGCTAACCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 27 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Done.