Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19866354
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 74000 characters in sequence are not A, C, G, or T
File 82 of 100
Found at i:16856454 original size:159 final size:158
Alignment explanation
Indices: 16856097--16856567 Score: 407
Period size: 158 Copynumber: 3.0 Consensus size: 158
16856087 TGAACTCTGT
* * * *
16856097 ATGCTTAGACATGGAATGAACTCCGTATGCTTAAGCTAACCCACGAAATGAGCGTGCGGGCACTC
1 ATGCTTATACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTC
** * * * * *
16856162 AGCCGGCCGGAGAGGCAGAATGCGCATGCCGGGGATCGACCCGGTCCCCCCTGCGTGCTATCGAT
66 AGCCAACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCAGTCCCCCCTGCGTGCTACCAAT
* ** *
16856227 CCTGCTGCCGTAACCCTTGGTCCGATCCA
131 CCTACTGCCACAACCCTCGGTCCGA-CCA
* *
16856256 AT-CCTAGT-C-TAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCAC
1 ATGCTTA-TACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCAC
* * * *
16856318 TGAGCCAACCGGAGAGGCATAATGCGGAAGCCGAGGATC-AGCCCAGTCCCTCTCTGCGTGCTAC
64 TCAGCCAACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGA-CCCAGTCCC-CCCTGCGTGCTAC
* *
16856382 CAATCCTACTGCCACAACCCTCGGTCCG-GCT
127 CAATCCTACTGCCACAACCCTCGGTCCGACCA
* * * * * * * * * *
16856413 GTGGCTTATACATTGAATGAACTCCCTATGCCTAAACCAACCCATGAAATGGGCGTACGGACGCT
1 AT-GCTTATACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACT
**** * * * *
16856478 CAGTTGGCCAGAGAGGCAGAATGTGCAAGCCGGGGATC-AGCCC-GATCCCCCCTACGTGCTACC
65 CAGCCAACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGA-CCCAG-TCCCCCCTGCGTGCTACC
* * ** *
16856541 GATCCTGCTGCTGCAACCCTCGATCCG
128 AATCCTACTGCCACAACCCTCGGTCCG
16856568 GTCTGATCTT
Statistics
Matches: 251, Mismatches: 52, Indels: 19
0.78 0.16 0.06
Matches are distributed among these distances:
157 4 0.02
158 127 0.51
159 119 0.47
160 1 0.00
ACGTcount: A:0.23, C:0.32, G:0.26, T:0.18
Consensus pattern (158 bp):
ATGCTTATACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTC
AGCCAACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCAGTCCCCCCTGCGTGCTACCAAT
CCTACTGCCACAACCCTCGGTCCGACCA
Found at i:16857330 original size:26 final size:26
Alignment explanation
Indices: 16857293--16857344 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16857283 GCTCAAACTT
*
16857293 TTAGACTGGGAATGAACTTCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
16857319 TTAGACAT-GGAATGAACTCCGTATGC
1 TTAGAC-TGGGAATGAACTCCGTATGC
16857345 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:16857686 original size:26 final size:26
Alignment explanation
Indices: 16857635--16857687 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16857625 CTGGTTCGAT
***
16857635 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16857661 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
16857687 C
1 C
16857688 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16858579 original size:26 final size:26
Alignment explanation
Indices: 16858541--16858590 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
16858531 GTCTGATTTT
16858541 AGACTGAGAATGAACTCCGTATGCTC
1 AGACTGAGAATGAACTCCGTATGCTC
* *
16858567 AGACTGGGGATGAACTCCGTATGC
1 AGACTGAGAATGAACTCCGTATGC
16858591 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.22
Consensus pattern (26 bp):
AGACTGAGAATGAACTCCGTATGCTC
Found at i:16858923 original size:26 final size:26
Alignment explanation
Indices: 16858894--16858945 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16858884 CGATCCAATT
* *
16858894 TTAGGCTGGGAATGAACTCCATATGC
1 TTAGACTGGGAATAAACTCCATATGC
*
16858920 TTAGACTGGGGATAAACTCCATATGC
1 TTAGACTGGGAATAAACTCCATATGC
16858946 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATAAACTCCATATGC
Found at i:16859048 original size:184 final size:182
Alignment explanation
Indices: 16858734--16859298 Score: 614
Period size: 184 Copynumber: 3.0 Consensus size: 182
16858724 TCCGACTGGG
* * * *
16858734 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATAAACTCCATATGCCTAAGCCAACCCACGAAACGAGC-TGTGGGCGCTCAG
* * * * *
16858799 CCGACCGGAGAGGCAGAATGCATAAGCCGAGGATCGGCCCGGTCCACCCTACGTGCTACCGATCC
65 CCGACCGGAAAGGCAGAATGCGTAAGCCGAGGATCGACCCGGTCC-CTCTACGTGCTATCGATCC
* * * *
16858864 TGCTATCGCAACCCTCAATCCGATCCAATTTTAGGCTGGGAATGAACTCCATAT
129 TGCTATCGCAACCCTCAGTCTGATCCAATCTTAGACTGGGAATGAACTCCATAT
* * *
16858918 GCTTAGAC-TGGGGATAAACTCCATATGCCTAAGTCAACCCATGAAACGAGCTTGTGGGCGCTCA
1 GCTTAGACAT-GGAATAAACTCCATATGCCTAAGCCAACCCACGAAACGAGC-TGTGGGCGCTCA
*
16858982 GCCGACCGGAAAGGCAGAATGCGTAAGCCGAGGATCGACCCGATCCTCTCTACGTGCTATCGATC
64 GCCGACCGGAAAGGCAGAATGCGTAAGCCGAGGATCGACCCGGTCC-CTCTACGTGCTATCGATC
* * * * * *
16859047 CTGATGCTGGTCCTGCTGTCGTAACCCTCAGTTTGGTCCGATCTTAGACTAGGAGTGAACTCCAT
128 C---TGC---T-AT-C-G-C--AACCCTCAGTCTGATCCAATCTTAGACTGGGAATGAACTCCAT
16859112 AT
181 AT
* *
16859114 GCTTAGACATGGAATGAAC-CCATATACCTAAGCCAACCCACGAAACGAG-TGTGCGGCCGCTCA
1 GCTTAGACATGGAATAAACTCCATATGCCTAAGCCAACCCACGAAACGAGCTGTG-GG-CGCTCA
* * * * * *
16859177 GCCGACCGGAAAGGCAGAATGCGCAAGCTGAGGACCGACCCGGTCCCTCCTGCATGCTGTCGATC
64 GCCGACCGGAAAGGCAGAATGCGTAAGCCGAGGATCGACCCGGTCCCT-CTACGTGCTATCGATC
* * * *
16859242 CTACTACCACAACCCTCGGTCTGATCCAATCTTAGACTGGGAATGAACTCCATAT
128 CTGCTATCGCAACCCTCAGTCTGATCCAATCTTAGACTGGGAATGAACTCCATAT
16859297 GC
1 GC
16859299 CTAAGTAAAC
Statistics
Matches: 317, Mismatches: 47, Indels: 35
0.79 0.12 0.09
Matches are distributed among these distances:
183 42 0.13
184 113 0.36
185 1 0.00
187 4 0.01
189 1 0.00
190 1 0.00
191 1 0.00
192 3 0.01
193 5 0.02
194 5 0.02
195 89 0.28
196 51 0.16
197 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (182 bp):
GCTTAGACATGGAATAAACTCCATATGCCTAAGCCAACCCACGAAACGAGCTGTGGGCGCTCAGC
CGACCGGAAAGGCAGAATGCGTAAGCCGAGGATCGACCCGGTCCCTCTACGTGCTATCGATCCTG
CTATCGCAACCCTCAGTCTGATCCAATCTTAGACTGGGAATGAACTCCATAT
Found at i:16859131 original size:26 final size:25
Alignment explanation
Indices: 16859089--16859138 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 25
16859079 TTGGTCCGAT
*
16859089 CTTAGACTAGGAGTGAACTCCATATG
1 CTTAGACTAGGAATGAAC-CCATATG
16859115 CTTAGAC-ATGGAATGAACCCATAT
1 CTTAGACTA-GGAATGAACCCATAT
16859139 ACCTAAGCCA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 7 0.32
26 15 0.68
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.26
Consensus pattern (25 bp):
CTTAGACTAGGAATGAACCCATATG
Found at i:16859520 original size:159 final size:157
Alignment explanation
Indices: 16859114--16859558 Score: 416
Period size: 159 Copynumber: 2.8 Consensus size: 157
16859104 AACTCCATAT
* * * *
16859114 GCTTAGACATGGAATGAAC-CCATATACCTAAGCCAACCCACGAAACGAGTGTGCGGCCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCAAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
16859178 CCGACCGGAAAGGCAGAATGCGCAAGCTGAGGACCGACCCGGTCCCTCCTGC-A-TGCTGTCGAT
66 CCGGCCGGAGAGGCAGAATGCGCAAGCAGA-GATCGGCCCGGTCCC-CCT-CTAGTGCTGTCGAT
* ** *
16859241 CCTACTACCACAACCCTCGGTCTGATCCAA
128 CCCACTACCACAACCCTCAATCCGATCCAA
* * * * * * * * *
16859271 TCTTAGAC-TGGGAATGAACTCCATATGCCTAAGTAAACCCATGAAATGCGCATTCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCAAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
16859335 GCCGGCCAGAGCGGCATAATGCGCAAGTCAGAGATTGGCTCGATCCCCCTCTATGTGCTGTCGAT
65 GCCGGCCGGAGAGGCAGAATGCGCAAG-CAGAGATCGGCCCGGTCCCCCTCTA-GTGCTGTCGAT
* * **
16859400 CCCGCTGCCACAACCCTCAATCCGA-CTGGA
128 CCCACTACCACAACCCTCAATCCGATC-CAA
* *
16859430 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCAAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCAAACCCACGAAACGAGCGTGCGGGCGCTCAG
* ** * *
16859495 CCGGTCGGAGAGATAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCC-CTACGTGCTGTCGATC
66 CCGGCCGGAGAGGCAGAATGCGCAAG-CAGAGATCGGCCCGGTCCCCCTCTA-GTGCTGTCGATC
16859559 TTGCTATCGT
Statistics
Matches: 225, Mismatches: 55, Indels: 15
0.76 0.19 0.05
Matches are distributed among these distances:
156 2 0.01
157 20 0.09
158 80 0.36
159 122 0.54
160 1 0.00
ACGTcount: A:0.25, C:0.32, G:0.26, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCAAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCCGGAGAGGCAGAATGCGCAAGCAGAGATCGGCCCGGTCCCCCTCTAGTGCTGTCGATCCC
ACTACCACAACCCTCAATCCGATCCAA
Found at i:16859627 original size:26 final size:26
Alignment explanation
Indices: 16859589--16859641 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16859579 CTGGTCTGAT
16859589 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16859615 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16859641 C
1 C
16859642 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16859739 original size:184 final size:184
Alignment explanation
Indices: 16859430--16859799 Score: 524
Period size: 184 Copynumber: 2.0 Consensus size: 184
16859420 TCCGACTGGA
*
16859430 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCAAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCAAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
16859495 CCGGTCGGAGAGATAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTACGTGCTGTCGATCT
66 CCGGCCGGAAAGATAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCCTACATGCTGTCGATCC
* * * * * * *
16859560 TGCTATCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
131 TACTACCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATAT
* * * *
16859614 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCAAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
16859679 CCGGCCGGAAAGGTAGAATGCGCACGCTGAGGATCGACCTGGTCCCCTCTACATGCTGTCGATCC
66 CCGGCCGGAAAGATAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCCTACATGCTGTCGATCC
*
16859744 TACTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATAT
131 TACTACCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATAT
16859798 GC
1 GC
16859800 CTAAGTCAAC
Statistics
Matches: 162, Mismatches: 24, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
184 162 1.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCAAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGCCGGAAAGATAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCCTACATGCTGTCGATCC
TACTACCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATAT
Found at i:16860082 original size:501 final size:498
Alignment explanation
Indices: 16859057--16860502 Score: 1669
Period size: 501 Copynumber: 2.9 Consensus size: 498
16859047 CTGATGCTGG
* * * * * *
16859057 TCCTGCTGTCGTAACCCTCAGTTTGGTCCGATCTTAGACTAGGAGTGAACTCCATATGCTTAGAC
1 TCCTGCTATCGCAACCCTCGGTCTGGTCTGATCTTAGACT-GGA-TGAACTCCGTATGCTTAGAC
* * * * *
16859122 ATGGAATGAAC-CCATATACCTAAGCCAACCCACGAAACGAGTGTGCGGCCGCTCAGCCGACCGG
64 ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAGCCGGCCGG
* * *
16859186 AAAGGCAGAATGCGCAAGCTGAGGACCGACCCGGT-CCCTCCTGCATGCTGTCGATCCTACTACC
129 AAAGGTAGAATGCGCAAGCTGAGGATCGACCTGGTCCCCT-CTGCATGCTGTCGATCCTACTACC
* * *
16859250 ACAACCCTCGGTCTGATCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGTAAACCCATGA
193 GCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGA
* * * *
16859315 AATGCGCATTCGGGCACTGAGCCGGCCAGAGCGGCATAATGCGCAAGTCAGAGATTGGCTCGATC
258 AACGAGCATTCGGGCACTGAGCCGGCCAGAGAGGCATAATGCACAAGTCAGAGATT-GCTCGATC
* ** *
16859380 CCCCTCTATGTGCTG-TCGATCCCGCTGCCACAACCCTCAATCCGACTGGAGCTTAGACATGGAA
322 CCCCTCTACGTGCTGCT-GATCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAA
* * * **
16859444 TGAACTCCCTATGCCTAAGCAAACCCACGAAACGGGCGTGCGGGCGCTCAGCCGGTCGGAGAGAT
386 TGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGTCGGTCAGAGAGGC
* *
16859509 AGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTACGTGCTGTCGA
451 AGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTACGTGCTGCCGA
* *
16859557 TCTTGCTATCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
1 TCCTGCTATCGCAACCCTCGGTCTGGTCTGATCTTAGACT-GG-ATGAACTCCGTATGCTTAGAC
16859622 ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAGCCGGCCGG
64 ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAGCCGGCCGG
* * *
16859687 AAAGGTAGAATGCGCACGCTGAGGATCGACCTGGTCCCCTCTACATGCTGTCGATCCTACTGCCG
129 AAAGGTAGAATGCGCAAGCTGAGGATCGACCTGGTCCCCTCTGCATGCTGTCGATCCTACTACCG
*
16859752 CAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAA
194 CAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAA
* * * *
16859817 ACAAGCATTCGGGCGCTGAGCCGGCCAAAGAGGCATAATGCACAAG-CTAAAGATTGTCTCGATC
259 ACGAGCATTCGGGCACTGAGCCGGCCAGAGAGGCATAATGCACAAGTC-AGAGATTG-CTCGATC
*
16859881 CCCCTCTACGTGCTGCTGATCCCGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAAT
322 CCCCTCTACGTGCTGCTGATCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAAT
* * * *
16859946 GAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGTGCTCAATCGGTCAGAGAGGCA
387 GAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGTCGGTCAGAGAGGCA
* * * * *
16860011 GAATGCACAAGCTGGGGCTCGACTCGGTCCCCCCTGCGTGCTGCCGA
452 GAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTACGTGCTGCCGA
*
16860058 TCCTG-T-TGCTGCAACCTTCGGTCTGGTCTGA---T---CT---T--A----G-A--C-T--AC
1 TCCTGCTAT-C-GCAACCCTCGGTCTGGTCTGATCTTAGACTGGATGAACTCCGTATGCTTAGAC
** * * * *
16860100 ---GAATGAACTCCGTATGCCTAAGTTAACCCATGAAACGAGCT-TACGGGCACTCAACCGGCCA
64 ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAG-TGTGCGGGCGCTCAGCCGGCCG
* * * * * * ** * * *
16860161 GAGAGGTAGAATACGTAAGCTGGGGATCGACCTGATCCCCCCTGTGTACTGTTGATCCTGCTACC
128 GAAAGGTAGAATGCGCAAGCTGAGGATCGACCTGGTCCCCTCTGCATGCTGTCGATCCTACTACC
* * * * * * * * *
16860226 GTAACCTTCAGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGA
193 GCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGA
** * ** * * * *
16860291 AACGAGTGTTCGGGCACTGATCCGGCTGGAGAGGCATAATGCACAAGTCGGGGATCAGC-CCAGT
258 AACGAGCATTCGGGCACTGAGCCGGCCAGAGAGGCATAATGCACAAGTCAGAGAT-TGCTCGA-T
* * * * *
16860355 CCCCCTCTGCGTGCTGCTGGTCTCGCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAA
321 CCCCCTCTACGTGCTGCTGATCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAA
* * *
16860420 TGAACTCCCTATGCCTAAGCCAACCCACGAAACTGGCGTGCGAGCGCTCAGTCGGCCAGAGAGGC
386 TGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGTCGGTCAGAGAGGC
*
16860485 AGAATGCGCAAGTCGGGG
451 AGAATGCGCAAGCCGGGG
16860503 GGTGTGCGTA
Statistics
Matches: 821, Mismatches: 113, Indels: 49
0.84 0.11 0.05
Matches are distributed among these distances:
474 2 0.00
475 335 0.41
476 3 0.00
478 2 0.00
480 1 0.00
481 1 0.00
483 1 0.00
484 1 0.00
488 1 0.00
490 1 0.00
495 2 0.00
498 1 0.00
499 1 0.00
500 71 0.09
501 393 0.48
502 5 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (498 bp):
TCCTGCTATCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGATGAACTCCGTATGCTTAGACAT
GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAGCCGGCCGGAA
AGGTAGAATGCGCAAGCTGAGGATCGACCTGGTCCCCTCTGCATGCTGTCGATCCTACTACCGCA
ACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAAC
GAGCATTCGGGCACTGAGCCGGCCAGAGAGGCATAATGCACAAGTCAGAGATTGCTCGATCCCCC
TCTACGTGCTGCTGATCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAAC
TCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAGTCGGTCAGAGAGGCAGAAT
GCGCAAGCCGGGGATCGACCCGGTCCCCCCTACGTGCTGCCGA
Found at i:16860117 original size:158 final size:157
Alignment explanation
Indices: 16859615--16860496 Score: 756
Period size: 158 Copynumber: 5.6 Consensus size: 157
16859605 ACTCCGTATG
* *
16859615 CTTAGAC-ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAG
1 CTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
* * * * * * * * *
16859679 CCGGCCGGAAAGGTAGAATGCGCACGCTGAGGATCGACCTGGTCCCCTCTACATGCTG-TCGATC
65 CCGGCCAGAGAGGCAGAATGCACAAGCTGGGGATCGACC-GGTCCCCCCTGCGTGCTGCT-GATC
* * * *
16859743 CTACTGCCGCAACCCTCGGTCCGATCCGAT
128 CTGCTGCCGCAACCCTCGGTCTGGTCTGAT
* * * * * * * *
16859773 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACAAGCATTCGGGCGCTGAGC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAAC
* * *** * * * *
16859838 CGGCCAAAGAGGCATAATGCACAAGCTAAAGATTGTCTCGATCCCCCTCTACGTGCTGCTGATCC
66 CGGCCAGAGAGGCAGAATGCACAAGCTGGGGATCGAC-CGGTCCCCC-CTGCGTGCTGCTGATCC
* * * * * **
16859903 CGCTACCACAACCCTCGGTC-CGACTGGGG
129 TGCTGCCGCAACCCTCGGTCTGGTCT-GAT
* * * *
16859932 CTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGTGCTCAA
1 CTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
* * * *
16859996 TCGGTCAGAGAGGCAGAATGCACAAGCTGGGGCTCGACTCGGTCCCCCCTGCGTGCTGCCGATCC
65 CCGGCCAGAGAGGCAGAATGCACAAGCTGGGGATCGAC-CGGTCCCCCCTGCGTGCTGCTGATCC
* * *
16860061 TGTTGCTGCAACCTTCGGTCTGGTCTGAT
129 TGCTGCCGCAACCCTCGGTCTGGTCTGAT
* ** * * *
16860090 CTTAGACTACGAATGAACTCCGTATGCCTAAGTTAACCCATGAAACGAGCTTACGGGCACTCAAC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAAC
* * ** * * * *
16860155 CGGCCAGAGAGGTAGAATACGTAAGCTGGGGATCGACCTGATCCCCCCTGTGTACTGTTGATCCT
66 CGGCCAGAGAGGCAGAATGCACAAGCTGGGGATCGACC-GGTCCCCCCTGCGTGCTGCTGATCCT
* * * *
16860220 GCTACCGTAACCTTCAGTCTGGTCTGAT
130 GCTGCCGCAACCCTCGGTCTGGTCTGAT
* * * * * *
16860248 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTTCGGGCACTGATC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAAC
** * * * *
16860313 CGGCTGGAGAGGCATAATGCACAAG-TCGGGGATCAGCCCAGTCCCCCTCTGCGTGCTGCTGGT-
66 CGGCCAGAGAGGCAGAATGCACAAGCT-GGGGATC-GACCGGTCCCCC-CTGCGTGCTGCTGATC
* **
16860376 CTCGCTGCCACAACCCTCGGTCTGG-CTGGGG
128 CT-GCTGCCGCAACCCTCGGTCTGGTCT-GAT
* * *
16860407 CTTAGAC-ATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACTG-GCGTGCGAGCGCTCA
1 CTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAC-GAGCGTGCGGGCGCTCA
** *
16860470 GTCGGCCAGAGAGGCAGAATGCGCAAG
64 ACCGGCCAGAGAGGCAGAATGCACAAG
16860497 TCGGGGGGTG
Statistics
Matches: 576, Mismatches: 132, Indels: 31
0.78 0.18 0.04
Matches are distributed among these distances:
157 2 0.00
158 339 0.59
159 233 0.40
160 2 0.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (157 bp):
CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAAC
CGGCCAGAGAGGCAGAATGCACAAGCTGGGGATCGACCGGTCCCCCCTGCGTGCTGCTGATCCTG
CTGCCGCAACCCTCGGTCTGGTCTGAT
Found at i:16860398 original size:317 final size:318
Alignment explanation
Indices: 16859614--16860452 Score: 817
Period size: 317 Copynumber: 2.6 Consensus size: 318
16859604 AACTCCGTAT
* *
16859614 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTAAT
* * * * * * * * *
16859679 CCGGCCGGAAAGGTAGAATGCGCACGCTGAGGATCGACCTGGT-CCCCTCTACATGCTG-TCGAT
66 CCGGCTGGAGAGGCAGAATGCACAAGCTGGGGATCGACCCGGTCCCCCTCTGCGTGCTGCT-GAT
* * * * *
16859742 CCTACTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTC
130 CCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCATATGCCTAAGTC
* * * * * *
16859807 AACCCATGAAACAAGCATTCGGGCGCTGAGCCGGCCAAAGAGGCATAATGCACAAGCTAAAGATT
195 AACCCATGAAACAAGCATTCGGGCACTCAACCGGCCAAAGAGGCAGAATACACAAGCTAAAGATC
* * * *
16859872 GTCTCGATCCCCCTCTACGTGCTGCTGATCCCGCTACCACAACCCTCGGTCCGACTGGG
260 GCCTCGATCCCCCTCTACGTACTGCTGATCCCGCTACCACAACCCTCAGTCCGACTGGA
* * ** *
16859931 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCT-AA
* * * *
16859996 T-CGG-TCAGAGAGGCAGAATGCACAAGCTGGGGCTCGACTCGGTCCCCC-CTGCGTGCTGCCGA
65 TCCGGCT-GGAGAGGCAGAATGCACAAGCTGGGGATCGACCCGGTCCCCCTCTGCGTGCTGCTGA
* * * * *
16860058 TCCTGTTGCTGCAACCTTCGGTCTGGTCTGATCTTAGACTACGAATGAACTCCGTATGCCTAAGT
129 TCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCATATGCCTAAGT
* * * * ** ***
16860123 TAACCCATGAAACGAGC-TTACGGGCACTCAACCGGCCAGAGAGGTAGAATACGTAAGCTGGGGA
194 CAACCCATGAAACAAGCATT-CGGGCACTCAACCGGCCAAAGAGGCAGAATACACAAGCTAAAGA
** * * ** * * *
16860187 TCGACCT-GATCCCCC-CTGTGTACTGTTGATCCTGCTACCGTAACCTTCAGTCTGGTCT-GA
258 TCG-CCTCGATCCCCCTCTACGTACTGCTGATCCCGCTACCACAACCCTCAGTC-CGACTGGA
* * * * *
16860247 TCTTAGAC-TAGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTTCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTAA
* *
16860311 TCCGGCTGGAGAGGCATAATGCACAAG-TCGGGGATC-AGCCCAGTCCCCCTCTGCGTGCTGCTG
65 TCCGGCTGGAGAGGCAGAATGCACAAGCT-GGGGATCGA-CCCGGTCCCCCTCTGCGTGCTGCTG
* * ** *
16860374 GT-CTCGCTGCCACAACCCTCGGTCTGG-CTGGGGCTTAGAC-ATGGAATGAACTCCCTATGCCT
128 ATCCT-GCTGCCGCAACCCTCGGTCTGGTCT-GATCTTAGACTA-GGAATGAACTCCATATGCCT
* *
16860436 AAGCCAACCCACGAAAC
190 AAGTCAACCCATGAAAC
16860453 TGGCGTGCGA
Statistics
Matches: 420, Mismatches: 86, Indels: 32
0.78 0.16 0.06
Matches are distributed among these distances:
315 5 0.01
316 123 0.29
317 285 0.68
318 7 0.02
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.21
Consensus pattern (318 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTAAT
CCGGCTGGAGAGGCAGAATGCACAAGCTGGGGATCGACCCGGTCCCCCTCTGCGTGCTGCTGATC
CTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCATATGCCTAAGTCA
ACCCATGAAACAAGCATTCGGGCACTCAACCGGCCAAAGAGGCAGAATACACAAGCTAAAGATCG
CCTCGATCCCCCTCTACGTACTGCTGATCCCGCTACCACAACCCTCAGTCCGACTGGA
Found at i:16861082 original size:26 final size:26
Alignment explanation
Indices: 16861035--16861087 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16861025 GTTGACTTAG
* **
16861035 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCAACAGTCTAA
*
16861061 GCATACAGAGTTCATTAACAGTCTAA
1 GCATACAGAGTTCATCAACAGTCTAA
16861087 G
1 G
16861088 ATTAGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCAACAGTCTAA
Found at i:16861444 original size:159 final size:158
Alignment explanation
Indices: 16861200--16861563 Score: 403
Period size: 159 Copynumber: 2.3 Consensus size: 158
16861190 CGCACACCTG
* * *
16861200 TTTCGTGGGTTGGTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGAACCGAGGGTTG
1 TTTCGTGGGTTGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAACCGAACCGAGGGTTG
* * ***
16861265 TGGCAGTGGGACCGACAGCACGCAGAGGGCGATCGGGCC-GATCCTTGGCTTGCGCATTATGCCT
66 TGGCAGTAGGACCGACAGCACCCAGAGGGCGATCGGGCCAG-TCCCCAGCTTGCGCATTATGCCT
*
16861329 CTCCGACCGGCTCAACACCCAAACGCTCA
130 CTCCGACCGACTCAACACCCAAACGCTCA
* * *
16861358 TTTCGCGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACC-ACATCGAGG
1 TTTCGTGGGTTG-CTTAGGCATACGGAGTTCATT-CCATGTCTAAGCACCA-ACCGA-ACCGAGG
* * * * * *
16861420 GTTGTGGTAGTAGGATCGATAGCACCCAGGGGGGGATCGGGCCAGTCCCCAGCTTGCGCATTCTG
62 GTTGTGGCAGTAGGACCGACAGCACCCAGAGGGCGATCGGGCCAGTCCCCAGCTTGCGCATTATG
* * * ** **
16861485 CCTCTCCGACTGACTGAGCACCCTGACGCTGG
127 CCTCTCCGACCGACTCAACACCCAAACGCTCA
* *
16861517 TTTCATGGGTTGGCTTAGGTATACGGAGTTCATTCCATGTCTAAGCA
1 TTTCGTGGGTT-GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
16861564 TATGGAGTTC
Statistics
Matches: 170, Mismatches: 28, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
158 17 0.10
159 147 0.86
160 6 0.04
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (158 bp):
TTTCGTGGGTTGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAACCGAACCGAGGGTTG
TGGCAGTAGGACCGACAGCACCCAGAGGGCGATCGGGCCAGTCCCCAGCTTGCGCATTATGCCTC
TCCGACCGACTCAACACCCAAACGCTCA
Found at i:16861713 original size:324 final size:324
Alignment explanation
Indices: 16861298--16861912 Score: 704
Period size: 324 Copynumber: 1.9 Consensus size: 324
16861288 AGAGGGCGAT
* * *
16861298 CGGGCCGATCCTTGGCTTGCGCATTATGCCTCTCCGACCGGCTCAACACCCAAACGCTCATTTCG
1 CGGGCCGATCCTTGACTTGCGCATTATGCCTCTCCGACCGGCTCAACACCCAAACGCCCATTTCA
* * *
16861363 CGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCACATCGAGGGTTGTG
66 CGGGTTGACTTAAGCATACGGAGTTCATT-CCATGTCTAAGCACCAG-CCACATCGAGGGTTATG
* * * * * * * *
16861426 GTAGTAG-GATCGATAGCACCCAGGGGGGGATCGGGCC-AGTCCCCAGCTTGCGCATTCT-GCCT
129 GCAG-AGAGACCAACAGCACACAGAGGGGGACCGAGCCGA-TCCCCAGCTTGCGCATTCTAG-CT
** * * ** * *
16861488 CTCCGA-CTGACTGAGCACCCTG-ACGCTGGTTTCATGGGTTGGCTTAGGTATACGGAGTTCATT
191 CAACGACCAG-CTAAG-ACCCTGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATT
* *
16861551 CCATGTCTAAGCATATGGAGTTCATTCCCAATCTAAGATCAAACCATATCGAGGGCTATGGCATG
254 CCATGTCTAAGCATACGGAGTTCATTACCAATCTAAGATCAAACCATATCGAGGGCTATGGCATG
16861616 GGGGAC
319 GGGGAC
* * * * * * * ** *
16861622 CGGGCCGATCTTTGACTTGCGCATTTTGCCTCTTCGGCCGGCTGAGCGCCCGCACGCCCGTTTCA
1 CGGGCCGATCCTTGACTTGCGCATTATGCCTCTCCGACCGGCTCAACACCCAAACGCCCATTTCA
* * * * *
16861687 TGGGTTGGCTTAAGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGATCGAGGGTTATGGC
66 CGGGTTGACTTAAGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCACATCGAGGGTTATGGC
* *
16861752 AGCGAGACCAACAGCACATAGAGGGGGACCGAGCCGATCCCCAGCTTGCGCATTCTAGCTCAACG
131 AGAGAGACCAACAGCACACAGAGGGGGACCGAGCCGATCCCCAGCTTGCGCATTCTAGCTCAACG
* * **
16861817 GCCAGTTAAGTGCCTGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTC
196 ACCAGCTAAGACCCTGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTC
*
16861882 TAAGCATACGGAGTTCATTACCAGTCTAAGA
261 TAAGCATACGGAGTTCATTACCAATCTAAGA
16861913 GTTTGTGCCA
Statistics
Matches: 238, Mismatches: 46, Indels: 14
0.80 0.15 0.05
Matches are distributed among these distances:
323 8 0.03
324 223 0.94
325 7 0.03
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.24
Consensus pattern (324 bp):
CGGGCCGATCCTTGACTTGCGCATTATGCCTCTCCGACCGGCTCAACACCCAAACGCCCATTTCA
CGGGTTGACTTAAGCATACGGAGTTCATTCCATGTCTAAGCACCAGCCACATCGAGGGTTATGGC
AGAGAGACCAACAGCACACAGAGGGGGACCGAGCCGATCCCCAGCTTGCGCATTCTAGCTCAACG
ACCAGCTAAGACCCTGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTC
TAAGCATACGGAGTTCATTACCAATCTAAGATCAAACCATATCGAGGGCTATGGCATGGGGGAC
Found at i:16861889 original size:26 final size:26
Alignment explanation
Indices: 16861859--16861911 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16861849 GTTGGCTTAG
16861859 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTACCA-GTCTAA
*
16861885 GCATACGGAGTTCATTACCAGTCTAA
1 GCATACAGAGTTCATTACCAGTCTAA
16861911 G
1 G
16861912 AGTTTGTGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTACCAGTCTAA
Found at i:16862456 original size:26 final size:26
Alignment explanation
Indices: 16862426--16862478 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16862416 GTTGACTTAG
*
16862426 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
16862452 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
16862478 G
1 G
16862479 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:16862760 original size:159 final size:157
Alignment explanation
Indices: 16862512--16863747 Score: 959
Period size: 159 Copynumber: 7.8 Consensus size: 157
16862502 GTAGCAGGAT
* * * * * * *
16862512 CGACAGCACGTAG-GGGGGATCCGGTCGATCCCCGGCTTGCACATTCTACCTCTCC-AGTCGACT
1 CGACAGCACGCAGAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGA-CCGGCT
* * *
16862575 GAGCGCCTGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC
65 CAGCGCC-GAACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC
*
16862640 CAGTCGGACCGAGGGTTGTGGCAGCGGTAC
129 CAGTCAGACCGAGGGTTGTGGCAGCGG-AC
* * * * *
16862670 CGGCAGCATGTAGAGGGGGATTGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCAGCTC
1 CGACAGCACGCAGAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTC
* * * * ** **
16862735 AGCGCTCGAATGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAG-AT
66 AGCGC-CGAACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCC
** * * ** ** * *
16862798 TGGACCAGACCAAGGGTTACGATAGTAGGAT
129 CAG-TCAGACCGAGGGTTGTGGCAG-CGGAC
** * * * * *
16862829 CGACAGCACGCAG-GAAGGATCAGGTCGGTCCCCGGCTTGCGCATTCTGCCTCTCTGACCGGCTA
1 CGACAGCACGCAGAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTC
* * *
16862893 AACGACCGCACGCTCGTTTCCTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC
66 AGCG-CCGAACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCC
* *
16862958 AGTCAGACCGAGGGTCGTGGCAGTAGGAC
130 AGTCAGACCGAGGGTTGTGGCAG-CGGAC
** * * * *
16862987 CGGTAGCATGCAGAGGGGGA-CTGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCT
1 CGACAGCACGCAGAGGGGGATC-GGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCT
* * * * * *
16863051 GAGCGCCTGCATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCG
65 CAGCGCC-GAACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC
* *
16863116 CAGTCGGACCGAGGATTGTGGCAGCGGGAC
129 CAGTCAGACCGAGGGTTGTGGCAGC-GGAC
* * * * * * *
16863146 CGATAGCAGGTAGAGGGGGATCGGGTCGATCCCCAGCTGGCGTATTATGCCTCTCCGATCGGCTC
1 CGACAGCACGCAGAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTC
* ** * * **
16863211 AGCACCCGAACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCA-ATCTAAG-AT
66 AGC-GCCGAACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCC
* * * * * * *
16863274 CGGACCGAACTGAGGGTTGCGACAGCTGGAT
129 CAGTCAG-ACCGAGGGTTGTGGCAGC-GGAC
* * * * *
16863305 CAACAGCACGCAG-GGGGGATCGAGTCGATCCTCGGCTTGCGCATTCTGCCTCGT-CGATCGGCT
1 CGACAGCACGCAGAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTC-TCCGACCGGCT
* * * * * * * *
16863368 AAGCACTCGCATGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCTTGTCTTAGCCC
65 CAGCGC-CGAACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC
* ** *
16863433 CTGTCAGATTGAGGGTTGTGGCAACGGGAC
129 CAGTCAGACCGAGGGTTGTGGCAGC-GGAC
* * * * * * *
16863463 CGACAGCACGCAGAGGGGGACCGGGCCGATCCCTGGCATGAGCATTATGCCTCTTCGACTGGCTC
1 CGACAGCACGCAGAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTC
* * * ***
16863528 AGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAA-TAT
66 AGCGCCGA-ACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCC
* ** * *
16863591 CAGACCAGACCGAGGGTTGCAGCAGCTAGAT
129 CAG-TCAGACCGAGGGTTGTGGCAGC-GGAC
* * * * * * * * * *
16863622 TGATAGCACGCAGAGCGTGA-CTGGGCCGATCCCAGGCTTACGCATTCTGCCACTCCGACCAGCT
1 CGACAGCACGCAGAGGGGGATC-GGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCT
* * * * * * *
16863686 GAACGCCCGCACGTTCGTTTCGTGTGTTGGCTTAGGCATACGGAGTTCATTACATGTCTAAG
65 CAGCG-CCGAACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
16863748 TATACGGAGT
Statistics
Matches: 844, Mismatches: 204, Indels: 58
0.76 0.18 0.05
Matches are distributed among these distances:
157 6 0.01
158 260 0.31
159 561 0.66
160 17 0.02
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (157 bp):
CGACAGCACGCAGAGGGGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTC
AGCGCCGAACGCTCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
GTCAGACCGAGGGTTGTGGCAGCGGAC
Found at i:16863040 original size:317 final size:317
Alignment explanation
Indices: 16862459--16863112 Score: 886
Period size: 317 Copynumber: 2.1 Consensus size: 317
16862449 TAAGCATATG
* * ** * *
16862459 GAGTTCATTCCCAATCTAAGATCGGACCGGACTGAGGGTTACGGTAGCAGGATCGACAGCACGTA
1 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTACGATAGCAGGATCGACAGCACGCA
** * * * *
16862524 GGGGGGATCCGGTCGATCCCCGGCTTGCACATTCTACCTCTCCAGTCGACTGAGCGCCTGCACGC
66 GGAAGGATCAGGTCGATCCCCGGCTTGCACATTCTACCTCTCCAGCCGACTAAACGCCTGCACGC
* *
16862589 CCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAGG
131 CCGTTTCCTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGG
* * * * *
16862654 GTTGTGGCAGCGGTACCGGCAGCATGTAGAGGGGGATTGGGTCGATCCCCGGCTTGCGCATTATG
196 GTCGTGGCAGAGGTACCGGCAGCATGCAGAGGGGGACTGGGTCGATCCCCGACTTGCGCATTATG
*
16862719 CCTCTCCGACCAGCTCAGCG-CTCGAATGCTCATTTCATGGGTTGACTTAGGCATACA
261 CCTCTCCGACCAGCTCAGCGCCT-GAATGCCCATTTCATGGGTTGACTTAGGCATACA
* *
16862776 GAGTTCATTCCCAGTCTAAGATTGGACCAGACCAAGGGTTACGATAGTAGGATCGACAGCACGCA
1 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTACGATAGCAGGATCGACAGCACGCA
* * * * *
16862841 GGAAGGATCAGGTCGGTCCCCGGCTTGCGCATTCTGCCTCT-CTGACCGGCTAAACGACC-GCAC
66 GGAAGGATCAGGTCGATCCCCGGCTTGCACATTCTACCTCTCCAG-CCGACTAAACG-CCTGCAC
*
16862904 GCTCGTTTCCTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGA
129 GCCCGTTTCCTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGA
*
16862969 GGGTCGTGGCAGTAGG-ACCGGTAGCATGCAGAGGGGGACTGGGTCGATCCCCGACTTGCGCATT
194 GGGTCGTGGCAG-AGGTACCGGCAGCATGCAGAGGGGGACTGGGTCGATCCCCGACTTGCGCATT
* * * * * * * **
16863033 CTGCCTCTCCGGCCGGCTGAGCGCCTGCATGCCCGTTTCATGGGTTGGCTTAGGCATAGG
258 ATGCCTCTCCGACCAGCTCAGCGCCTGAATGCCCATTTCATGGGTTGACTTAGGCATACA
16863093 GAGTTCATT-CCATGTCTAAG
1 GAGTTCATTCCCA-GTCTAAG
16863113 CCGCAGTCGG
Statistics
Matches: 294, Mismatches: 38, Indels: 10
0.86 0.11 0.03
Matches are distributed among these distances:
316 5 0.02
317 283 0.96
318 6 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (317 bp):
GAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTACGATAGCAGGATCGACAGCACGCA
GGAAGGATCAGGTCGATCCCCGGCTTGCACATTCTACCTCTCCAGCCGACTAAACGCCTGCACGC
CCGTTTCCTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGG
GTCGTGGCAGAGGTACCGGCAGCATGCAGAGGGGGACTGGGTCGATCCCCGACTTGCGCATTATG
CCTCTCCGACCAGCTCAGCGCCTGAATGCCCATTTCATGGGTTGACTTAGGCATACA
Found at i:16863334 original size:317 final size:318
Alignment explanation
Indices: 16862991--16863747 Score: 877
Period size: 317 Copynumber: 2.4 Consensus size: 318
16862981 TAGGACCGGT
* * * * *
16862991 AGCATGCAGAGGGGGACTGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGCCGGCTGAGCG
1 AGCACGCAGAGCGGGACTGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
* *
16863056 CCTGCATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCGCAGTC
66 CCTGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC
* * * * * * *
16863121 GGACCGAGGATTGTGGCAGCGGGACCGATAGCAGGTAGAGGGGGATCGGGTCGATCCCCAGC-TG
131 AGACCGAGGATTGTGGCAACGGGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCAGCATG
16863185 -GCGTATTATGCCTCTCCGA-TCGGCTCAGCACCCGA-ACGCTCGTTTCGTGGGTTAACTTAGGC
196 AGC--ATTATGCCTCTCCGACT-GGCTCAGCACCC-ACACGCTCGTTTCGTGGGTTAACTTAGGC
* * *
16863247 ATACGGAGTTCATTCCCAATCTAAGATCGGACC-GAACTGAGGGTTGC-GACAGCTGGATCAAC
257 ATACGGAGTTCATTCCCAATCTAAGATCAGACCAG-ACCGAGGGTTGCAG-CAGCTAGATCAAC
* * * *
16863309 AGCACGCAG-GGGGGA-TCGAGTCGATCCTCGGCTTGCGCATTCTGCCTCGT-CGATCGGCTAAG
1 AGCACGCAGAGCGGGACT-GAGTCGATCCCCGGCTTGCGCATTCTGCCTC-TCCGACCGGCTGAG
* * * * *
16863371 C-ACTCGCATGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCTTGTCTTAGCCCCT
64 CGCCT-GCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
** * **
16863435 GTCAGATTGAGGGTTGTGGCAACGGGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCTGGC
128 GTCAGACCGAGGATTGTGGCAACGGGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCAGC
* * *
16863500 ATGAGCATTATGCCTCTTCGACTGGCTCAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCA
193 ATGAGCATTATGCCTCTCCGACTGGCTCAGCACCCACACGCTCGTTTCGTGGGTTAACTTAGGCA
* * ** *
16863565 TACGGAGTTCATTCCCAGTCTAATATCAGACCAGACCGAGGGTTGCAGCAGCTAGATTGAT
258 TACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCTAGATCAAC
* * * * * * * *
16863626 AGCACGCAGAGCGTGACTGGGCCGATCCCAGGCTTACGCATTCTGCCACTCCGACCAGCTGAACG
1 AGCACGCAGAGCGGGACTGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
* * ** * * *
16863691 CCCGCACGTTCGTTTCGTGTGTTGGCTTAGGCATACGGAGTTCATTACATGTCTAAG
66 CCTGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
16863748 TATACGGAGT
Statistics
Matches: 366, Mismatches: 60, Indels: 26
0.81 0.13 0.06
Matches are distributed among these distances:
316 4 0.01
317 261 0.71
318 97 0.27
319 4 0.01
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.23
Consensus pattern (318 bp):
AGCACGCAGAGCGGGACTGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTGAGCG
CCTGCATGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC
AGACCGAGGATTGTGGCAACGGGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCAGCATG
AGCATTATGCCTCTCCGACTGGCTCAGCACCCACACGCTCGTTTCGTGGGTTAACTTAGGCATAC
GGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCTAGATCAAC
Found at i:16863478 original size:476 final size:476
Alignment explanation
Indices: 16862506--16863587 Score: 1379
Period size: 476 Copynumber: 2.3 Consensus size: 476
16862496 GTTACGGTAG
* * * * * *
16862506 CAGGATCGACAGCACGTAG-GGGGGA-TCCGGTCGATCCCCGGCTTGCACATTCTACCTCTCCAG
1 CAGGACCGACAGCACGCAGAGGGGGACT-GGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGG
* *
16862569 TCGACTGAGCGCCTGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
65 CCGGCTGAGCGCCTGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCT
* * * * *
16862634 AAGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGTACCGGCAGCATGTAGAGGGGGATTGGGTCGA
130 AAGCCCCAGTCGGACCGAGGATTGTGGCAGCGGGACCGACAGCAGGTAGAGGGGGATCGGGTCGA
* * * * * *
16862699 TCCCCGGCTTGCGCATTATGCCTCTCCGACCAGCTCAGCGCTCGAATGCTCATTTCATGGGTTGA
195 TCCCCAGCTGGCGCATTATGCCTCTCCGACCAGCTCAGCACCCGAACGCTCATTTCATGGGTTAA
* * *
16862764 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCAGACCAAGGGTTACGATAGTAGGAT
260 CTTAGGCATACAGAGTTCATTCCCAATCTAAGATCGGACCAGACCAAGGGTTACGACAGTAGGAT
* *
16862829 CGACAGCACGCAGGAAGGATCAGGTCGGTCCCCGGCTTGCGCATTCTGCCTCTCTGACCGGCTAA
325 CAACAGCACGCAGGAAGGATCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCTGACCGGCTAA
* *
16862894 ACGACCGCACGCTCGTTTCCTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
390 ACGACCGCACGCCCATTTCCTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
*
16862959 GTCAGACCGAGGGTCGTGGCAG
455 GTCAGACCGAGGGTCGTGGCAA
* ** * *
16862981 TAGGACCGGTAGCATGCAGAGGGGGACTGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGGC
1 CAGGACCGACAGCACGCAGAGGGGGACTGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGC
* *
16863046 CGGCTGAGCGCCTGCATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
66 CGGCTGAGCGCCTGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
* *
16863111 AGCCGCAGTCGGACCGAGGATTGTGGCAGCGGGACCGATAGCAGGTAGAGGGGGATCGGGTCGAT
131 AGCCCCAGTCGGACCGAGGATTGTGGCAGCGGGACCGACAGCAGGTAGAGGGGGATCGGGTCGAT
* * * * *
16863176 CCCCAGCTGGCGTATTATGCCTCTCCGATCGGCTCAGCACCCGAACGCTCGTTTCGTGGGTTAAC
196 CCCCAGCTGGCGCATTATGCCTCTCCGACCAGCTCAGCACCCGAACGCTCATTTCATGGGTTAAC
* ** *
16863241 TTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGACC-GAACTGAGGGTTGCGACAGCT-GGA
261 TTAGGCATACAGAGTTCATTCCCAATCTAAGATCGGACCAG-ACCAAGGGTTACGACAG-TAGGA
** * *
16863304 TCAACAGCACGCAGGGGGGATC-GAGTCGATCCTCGGCTTGCGCATTCTGCCTCGTC-GATCGGC
324 TCAACAGCACGCAGGAAGGATCAG-GTCGATCCCCGGCTTGCGCATTCTGCCTC-TCTGACCGGC
* * * * *
16863367 TAAGC-ACTCGCATGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCTTGTCTTAGC
387 TAAACGAC-CGCACGCCCATTTCCTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
* ** *
16863431 CCCTGTCAGATTGAGGGTTGTGGCAA
451 CCCAGTCAGACCGAGGGTCGTGGCAA
* * * * * * * * *
16863457 CGGGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCTGGCATGAGCATTATGCCTCTTCGAC
1 CAGGACCGACAGCACGCAGAGGGGGACTGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGC
* * ** * * *
16863522 TGGCTCAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCT
66 CGGCTGAGCGCCTGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATT-CCATGTCT
16863586 AA
130 AA
16863588 TATCAGACCA
Statistics
Matches: 518, Mismatches: 81, Indels: 15
0.84 0.13 0.02
Matches are distributed among these distances:
475 17 0.03
476 494 0.95
477 7 0.01
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.23
Consensus pattern (476 bp):
CAGGACCGACAGCACGCAGAGGGGGACTGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGC
CGGCTGAGCGCCTGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
AGCCCCAGTCGGACCGAGGATTGTGGCAGCGGGACCGACAGCAGGTAGAGGGGGATCGGGTCGAT
CCCCAGCTGGCGCATTATGCCTCTCCGACCAGCTCAGCACCCGAACGCTCATTTCATGGGTTAAC
TTAGGCATACAGAGTTCATTCCCAATCTAAGATCGGACCAGACCAAGGGTTACGACAGTAGGATC
AACAGCACGCAGGAAGGATCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCTGACCGGCTAAA
CGACCGCACGCCCATTTCCTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG
TCAGACCGAGGGTCGTGGCAA
Found at i:16863629 original size:476 final size:476
Alignment explanation
Indices: 16862584--16863736 Score: 1255
Period size: 476 Copynumber: 2.4 Consensus size: 476
16862574 TGAGCGCCTG
* * * ** * *
16862584 CACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGGAC
1 CACGCCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCAGCAGCCAGAC
* ** ** * * *
16862649 CGAGGGTTGTGGCAGCG-GTACCGGCAGCATGTAGAGGGGGATTGGGTCGATCCCCGGCTTGCGC
66 CGAGGATTGCAGCAGCGAG-ACCGATAGCACGTAGAGGGGGATCGGGTCGATCCCCAGCTTGCGC
* * * * *
16862713 ATTATGCCTCTCCGACCAGCTCAGCGCTCGAATGCTCATTTCATGGGTTGACTTAGGCATACAGA
130 ATTATGCCTCTCCGACCAGCTCAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * * *
16862778 GTTCATTCCCAGTCTAAGATTGGACCAGACCAAGGGTTACGATAGTAGGATCGACAGCACGCAGG
195 GTTCATTCCCAATCTAAGATCGGACCAGACCAAGGGTTACGACAGTAGGATCAACAGCACGCAGG
* *
16862843 AAGGATCAGGTCGGTCCCCGGCTTGCGCATTCTGCCTCTCTGACCGGCTAAACGACCGCACGCTC
260 AAGGATCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCTGACCGGCTAAACGACCGCACGCCC
*
16862908 GTTTCCTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGT
325 ATTTCCTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGT
** ** * * * * * *
16862973 CGTGGCAGTAGGACCGGTAGCATGCAGAGGGGGACTGGGTCGATCCCCGACTTGCGCATTCTGCC
390 CGTGGCAACAGGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGACATGAGCATTATGCC
* * **
16863038 TCTCCGGCCGGCTGAGCGCCTG
455 TCTCCGACCGGCTCAGCGCCCA
* * * * * *
16863060 CATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCGCAGTCGGAC
1 CACGCCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCAGCAGCCAGAC
** * * * *
16863125 CGAGGATTGTGGCAGCGGGACCGATAGCAGGTAGAGGGGGATCGGGTCGATCCCCAGCTGGCGTA
66 CGAGGATTGCAGCAGCGAGACCGATAGCACGTAGAGGGGGATCGGGTCGATCCCCAGCTTGCGCA
* * * *
16863190 TTATGCCTCTCCGATCGGCTCAGCACCCGAACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAG
131 TTATGCCTCTCCGACCAGCTCAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
** *
16863255 TTCATTCCCAATCTAAGATCGGACC-GAACTGAGGGTTGCGACAGCT-GGATCAACAGCACGCAG
196 TTCATTCCCAATCTAAGATCGGACCAG-ACCAAGGGTTACGACAG-TAGGATCAACAGCACGCAG
** * * * *
16863318 GGGGGATC-GAGTCGATCCTCGGCTTGCGCATTCTGCCTCGTC-GATCGGCTAAGC-ACTCGCAT
259 GAAGGATCAG-GTCGATCCCCGGCTTGCGCATTCTGCCTC-TCTGACCGGCTAAACGAC-CGCAC
* * * * **
16863380 GCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCTTGTCTTAGCCCCTGTCAGATTGA
321 GCCCATTTCCTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGA
* * * *
16863445 GGGTTGTGGCAACGGGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCTGGCATGAGCATTA
386 GGGTCGTGGCAACAGGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGACATGAGCATTA
* *
16863510 TGCCTCTTCGACTGGCTCAGCGCCCA
451 TGCCTCTCCGACCGGCTCAGCGCCCA
* * * *
16863536 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAA-TATCAGACCAG
1 CACGCCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTCTAAGCAGCAG-CCAG
* * ** * * * * *
16863599 ACCGAGGGTTGCAGCAGCTAGATTGATAGCACGCAGAGCGTGA-CTGGGCCGAT-CCCAGGCTTA
64 ACCGAGGATTGCAGCAGCGAGACCGATAGCACGTAGAGGGGGATC-GGGTCGATCCCCA-GCTTG
* * * * * * * *
16863662 CGCATTCTGCCACTCCGACCAGCTGAACGCCCGCACGTTCGTTTCGTGTGTTGGCTTAGGCATAC
127 CGCATTATGCCTCTCCGACCAGCTCAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATAC
16863727 GGAGTTCATT
192 GGAGTTCATT
16863737 ACATGTCTAA
Statistics
Matches: 568, Mismatches: 99, Indels: 20
0.83 0.14 0.03
Matches are distributed among these distances:
475 12 0.02
476 549 0.97
477 7 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (476 bp):
CACGCCCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTCTAAGCAGCAGCCAGAC
CGAGGATTGCAGCAGCGAGACCGATAGCACGTAGAGGGGGATCGGGTCGATCCCCAGCTTGCGCA
TTATGCCTCTCCGACCAGCTCAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
TTCATTCCCAATCTAAGATCGGACCAGACCAAGGGTTACGACAGTAGGATCAACAGCACGCAGGA
AGGATCAGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCTGACCGGCTAAACGACCGCACGCCCA
TTTCCTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTC
GTGGCAACAGGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGACATGAGCATTATGCCT
CTCCGACCGGCTCAGCGCCCA
Found at i:16864055 original size:13 final size:13
Alignment explanation
Indices: 16864037--16864063 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
16864027 TGTGCATTAT
16864037 GCCTCTTCGGTCG
1 GCCTCTTCGGTCG
16864050 GCCTCTTCGGTCG
1 GCCTCTTCGGTCG
16864063 G
1 G
16864064 TTGAGTGCCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.00, C:0.37, G:0.33, T:0.30
Consensus pattern (13 bp):
GCCTCTTCGGTCG
Found at i:16864626 original size:158 final size:158
Alignment explanation
Indices: 16864178--16864629 Score: 394
Period size: 159 Copynumber: 2.9 Consensus size: 158
16864168 AGGGTAGCGG
* * * *
16864178 TAGCAAGATCGATAGCATGCAGGGGGGATCGGA-TCGATCCCCGACTTGTGCATTCTGCCTCTCC
1 TAGCAGGATCGATAGCATGCAGGGGGGATCGGACT-GAACCCCGGCTTGCGCATTCTGCCTCTCC
* ** * * * *
16864242 GGTTGGCTGAGCACCTGCACGCCCGTTTCGTGGTTTGGCTTAGGCATAGGGAGTTCATTCCATGT
65 GGCTGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
* *
16864307 CTAAGCCCCAGCCAGACTGAGGGTTGTGG
130 CTAAGCCCCAGCCAGACCGAGGGTTGTGA
** * * *** * * *
16864336 TAGTGGGA-CCAGCAGCACATAGAGGGGGATCGGGC-CAATCCCCGGCTTGCGCATTATGCCTCT
1 TAGCAGGATCGA-TAGCATGCAG-GGGGGATCGGACTGAA-CCCCGGCTTGCGCATTCTGCCTCT
* * * * * * * * * * * **
16864399 TCAGCTAGCTCATTGCCCGTACGTTCATTTCGTTGGTTGACTTATGCATACAAAGTTCATTCCCA
63 CCGGCTGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCA
**** *
16864464 -GTCTAAG-ATTGGATCAGACCGAGGGTTGTGA
127 TGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGA
* *
16864495 TAGCAGGATCGATAGCATGCAGGGGGGACTC-GACTGAACCCCGGCTTACGCATTCTCCCTCTCC
1 TAGCAGGATCGATAGCATGCAGGGGGGA-TCGGACTGAACCCCGGCTTGCGCATTCTGCCTCTCC
* *
16864559 GGCCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTACATGT
65 GGCTGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
16864624 CTAAGC
130 CTAAGC
16864630 ATACGGAGTT
Statistics
Matches: 215, Mismatches: 68, Indels: 21
0.71 0.22 0.07
Matches are distributed among these distances:
157 4 0.02
158 96 0.45
159 110 0.51
160 5 0.02
ACGTcount: A:0.19, C:0.26, G:0.29, T:0.25
Consensus pattern (158 bp):
TAGCAGGATCGATAGCATGCAGGGGGGATCGGACTGAACCCCGGCTTGCGCATTCTGCCTCTCCG
GCTGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
TAAGCCCCAGCCAGACCGAGGGTTGTGA
Found at i:16864638 original size:26 final size:26
Alignment explanation
Indices: 16864602--16864669 Score: 100
Period size: 26 Copynumber: 2.6 Consensus size: 26
16864592 GTTGGCTTAG
16864602 GCATACGGAGTTCATTACATGTCTAA
1 GCATACGGAGTTCATTACATGTCTAA
* *
16864628 GCATACGGAGTTCATTCCATGTCTGA
1 GCATACGGAGTTCATTACATGTCTAA
* *
16864654 GCACATGGAGTTCATT
1 GCATACGGAGTTCATT
16864670 CCCAGTCTAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTACATGTCTAA
Found at i:16864670 original size:26 final size:26
Alignment explanation
Indices: 16864606--16864680 Score: 98
Period size: 26 Copynumber: 2.9 Consensus size: 26
16864596 GCTTAGGCAT
* *
16864606 ACGGAGTTCATTACATGTCTAAGCAT
1 ACGGAGTTCATTCCATGTCTAAGCAC
*
16864632 ACGGAGTTCATTCCATGTCTGAGCAC
1 ACGGAGTTCATTCCATGTCTAAGCAC
*
16864658 ATGGAGTTCATTCCCA-GTCTAAG
1 ACGGAGTTCATT-CCATGTCTAAG
16864681 ATTTTGCGCC
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
26 40 0.93
27 3 0.07
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (26 bp):
ACGGAGTTCATTCCATGTCTAAGCAC
Found at i:16865384 original size:26 final size:26
Alignment explanation
Indices: 16865348--16865400 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16865338 GTTGACTTAG
16865348 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16865374 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16865400 G
1 G
16865401 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16865866 original size:26 final size:26
Alignment explanation
Indices: 16865830--16865882 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16865820 GTTGGCTTAG
16865830 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
16865856 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16865882 G
1 G
16865883 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16866961 original size:26 final size:26
Alignment explanation
Indices: 16866924--16866976 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16866914 GTTGACTTAG
*
16866924 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
16866950 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
16866976 G
1 G
16866977 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:16868189 original size:26 final size:26
Alignment explanation
Indices: 16868159--16868208 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
16868149 GTTGACTTAG
16868159 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
16868185 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATCCCCAGTCT
16868209 GAGATTGGAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16868488 original size:159 final size:158
Alignment explanation
Indices: 16868259--16868687 Score: 405
Period size: 159 Copynumber: 2.7 Consensus size: 158
16868249 AGCTTACATG
* * * * * * * * * * * *
16868259 GGGGATCGGGCCGATCCCTGGCTTACGTATTTTGCCTCTCCTACCGGCTAAGCGCCCGTACGCCC
1 GGGGACCGGGCGGATCCCTGACTTGCGCATTATGCCTCTCCGATCGACCAAGCGCCCGCACGCTC
* * *
16868324 ATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGACTAAGCCCCAACCGGACCGAAGGT
66 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAAGGT
** ** *
16868389 TGTGGCAGCGGGACCGGTAGCACACAGAG
131 TGTGGCAGCAAGACCAATAGCACACAG-C
* * * * *
16868418 GGGGACCGGGTCGG-TCCCTGGCTTGCGCATTATGCCTCTTCGGTCGGCTCAA-CGCCCGCATGC
1 GGGGACCGGG-CGGATCCCTGACTTGCGCATTATGCCTCTCCGATCGAC-CAAGCGCCCGCACGC
* * ** ** * * *
16868481 TCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCA-GTCTAAGATCGGATCGGACTGAG
64 TCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCAACCGGACCGAA
* * * *
16868545 GGTTTTGGTAGCAAGATCAATAGCACGCAGC
128 GGTTGTGGCAGCAAGACCAATAGCACACAGC
* * * *
16868576 GGGGACCGGGCGGATCCCTGACTTGTGGATTCTGCCTCTCCGATCGACCAAGCGCCTGCACGCTC
1 GGGGACCGGGCGGATCCCTGACTTGCGCATTATGCCTCTCCGATCGACCAAGCGCCCGCACGCTC
* *
16868641 GTTTCATGGGTTGGCTCAGGCATACGGAGTTCATTCCATGTCTAAGC
66 GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
16868688 ATACACAGTT
Statistics
Matches: 216, Mismatches: 48, Indels: 13
0.78 0.17 0.05
Matches are distributed among these distances:
157 9 0.04
158 86 0.40
159 114 0.53
160 7 0.03
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (158 bp):
GGGGACCGGGCGGATCCCTGACTTGCGCATTATGCCTCTCCGATCGACCAAGCGCCCGCACGCTC
GTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAAGGT
TGTGGCAGCAAGACCAATAGCACACAGC
Found at i:16869063 original size:26 final size:26
Alignment explanation
Indices: 16869027--16869079 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16869017 GTTGACTTAG
16869027 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
16869053 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16869079 G
1 G
16869080 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16869574 original size:26 final size:26
Alignment explanation
Indices: 16869537--16869589 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16869527 GTTGGCTTAG
*
16869537 GCATATGGAGTTCATTC-CATGTCTAA
1 GCATATGAAGTTCATTCTCA-GTCTAA
16869563 GCATATGAAGTTCATTCTCAGTCTAA
1 GCATATGAAGTTCATTCTCAGTCTAA
16869589 G
1 G
16869590 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (26 bp):
GCATATGAAGTTCATTCTCAGTCTAA
Found at i:16870660 original size:159 final size:158
Alignment explanation
Indices: 16870300--16870780 Score: 441
Period size: 159 Copynumber: 3.0 Consensus size: 158
16870290 TTTTTTCCCA
* *
16870300 GTCTAAGATCAGACCGGACCGAGGGTTGCTGCAGCAGGATCGACAGCACGC-AGGGGGACCTAA-
1 GTCTAAGATCAAACCGGACCGAGGGTTGCCGCAGCAGGATCGACAGCACGCAAGGGGGACC-AAG
* * * * * * * * * * *
16870363 CCGATCCCCAGCTTACGTATTCTGCTTCTTCGACCGACTGTGCGCCCGTACGCCCGTTTCATGGG
65 CTGATCCCCAGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGCCCGCACACTCATTTCGTGGG
**
16870428 TTGGCTTAGGCATAGTGAGTTCATTCCAC
130 TTGGCTTAGGCATACAGAGTTCATTCCAC
** * * * ** * *
16870457 GTCTAAGCCCCAATCGAACCGAGGGTTGTGGCAAC-GAGACCGACAGCACGCAAAGGGGGACCAA
1 GTCTAAGATCAAACCGGACCGAGGGTTGCCGCAGCAG-GATCGACAGCACGC-AAGGGGGACCAA
* ** * * * * *
16870521 GCTGATCCCAAATTTGCGCATTATGCCTCTTCGGCCGGCTCAGTGCCCGCACACTCATTTTGTGG
64 GCTGATCCCCAGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGCCCGCACACTCATTTCGTGG
* *
16870586 GTTGACTTATGCATACAGAGTTCATTCC-C
129 GTTGGCTTAGGCATACAGAGTTCATTCCAC
* * * * * **
16870615 AGTCTAAGATCAAACCGGACCAAAGGTTGCCGCAGCAGGATCGACAGCATGTAGGGGGGGACCGG
1 -GTCTAAGATCAAACCGGACCGAGGGTTGCCGCAGCAGGATCGACAGCACGCA-AGGGGGACCAA
* * * *
16870680 GCTGATCCCCGGCTTGTGCATTCTGCCTC-TCTGACTGGTTGAGCGCCCGCACACTCATTTCGTG
64 GCTGATCCCCAGCTTGCGCATTCTGCCTCTTC-GACCGGCTGAGCGCCCGCACACTCATTTCGTG
* * *
16870744 CGTTGGCTTAGGCATACGGAGTTCATTCCAT
128 GGTTGGCTTAGGCATACAGAGTTCATTCCAC
16870775 GTCTAA
1 GTCTAA
16870781 TCATACGGAG
Statistics
Matches: 249, Mismatches: 66, Indels: 16
0.75 0.20 0.05
Matches are distributed among these distances:
156 1 0.00
157 39 0.16
158 6 0.02
159 202 0.81
160 1 0.00
ACGTcount: A:0.21, C:0.28, G:0.27, T:0.23
Consensus pattern (158 bp):
GTCTAAGATCAAACCGGACCGAGGGTTGCCGCAGCAGGATCGACAGCACGCAAGGGGGACCAAGC
TGATCCCCAGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGCCCGCACACTCATTTCGTGGGT
TGGCTTAGGCATACAGAGTTCATTCCAC
Found at i:16870792 original size:26 final size:26
Alignment explanation
Indices: 16870756--16870806 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16870746 TTGGCTTAGG
16870756 CATACGGAGTTCATT-CCATGTCTAAT
1 CATACGGAGTTCATTCCCA-GTCTAAT
16870782 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
16870807 GATTTTGAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAT
Found at i:16871510 original size:26 final size:26
Alignment explanation
Indices: 16871461--16871513 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16871451 GTTGACTTAG
*
16871461 GCATACGGAGTTCATCCCTTGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
16871487 GCATACGGAGTTCATTCCC-AGTCTAA
1 GCATACGGAGTTCA-TCCCTAGTCTAA
16871513 G
1 G
16871514 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:16871794 original size:159 final size:159
Alignment explanation
Indices: 16871526--16871991 Score: 435
Period size: 159 Copynumber: 2.9 Consensus size: 159
16871516 CGGATTGGAT
* * * * * * ** * * *
16871526 CGAGGGTTGCGGCAGTAAGATCGGCAGCACGCAGA-GGGGATCGGGTCAATCCCTGGCTTGTGCA
1 CGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGACCGGACCGATCCCTAGCTTGCGCA
* * * * *
16871590 TTTTGCCTCTTCGGCCAGCTGAGCACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGAAG
66 TTATGCCTCTCCGACCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGAAG
* *
16871655 TTCATTTCATGTCTAAGCCCCAG-CCGGAC
131 TTCATTCCATGT-TAAGCACCAGACCGGAC
* ** *
16871684 CGAGGGTTGTGGTAGTGGGACCGACAGCACGTAGAGGGGGACCGGACCGAT-CCTCAGCTTGCGC
1 CGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGACCGGACCGATCCCT-AGCTTGCGC
* *** * * * * *
16871748 ATTATGCCTCTTCGGTTGGCAT-AGCACCTGCACGTTCGTTCCATGGGTTGACTTAGGCATA-CA
65 ATTATGCCTCTCCGACCGGC-TGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGA
* *
16871811 GAGTTCATTCCCAGTGTT-AG-ATCGGACCGGAC
129 -AGTTCATT-CCA-TGTTAAGCACCAGACCGGAC
* * * * *
16871843 CGAGGGTTGTGGCAGCAGGATCGATAGCACGCAGAGGGGGACCGGATCGATCCCTGGCTTGTGCA
1 CGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGACCGGACCGATCCCTAGCTTGCGCA
* * *
16871908 TTCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGG-A
66 TTATGCCTCTCCGACCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATA-GGAA
16871972 GTTCATTCCATGTTTAAGCA
130 GTTCATTCCATG-TTAAGCA
16871992 TACGGAATTC
Statistics
Matches: 246, Mismatches: 48, Indels: 26
0.77 0.15 0.08
Matches are distributed among these distances:
157 2 0.01
158 40 0.16
159 193 0.78
160 8 0.03
161 3 0.01
ACGTcount: A:0.18, C:0.26, G:0.32, T:0.24
Consensus pattern (159 bp):
CGAGGGTTGTGGCAGCAGGACCGACAGCACGCAGAGGGGGACCGGACCGATCCCTAGCTTGCGCA
TTATGCCTCTCCGACCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAGGAAG
TTCATTCCATGTTAAGCACCAGACCGGAC
Found at i:16872015 original size:26 final size:26
Alignment explanation
Indices: 16871963--16872015 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
16871953 GTTGGCTTAG
* * *
16871963 GCATATGGAGTTCATTCCATGTTTAA
1 GCATACGGAATTCATTCCATGTCTAA
16871989 GCATACGGAATTCATTCCCA-GTCTAA
1 GCATACGGAATTCATT-CCATGTCTAA
16872015 G
1 G
16872016 ATCAGACTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAATTCATTCCATGTCTAA
Found at i:16872373 original size:26 final size:26
Alignment explanation
Indices: 16872343--16872395 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16872333 GTTGACATAG
*
16872343 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
16872369 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
16872395 G
1 G
16872396 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:16873458 original size:26 final size:26
Alignment explanation
Indices: 16873407--16873459 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16873397 GTTGACTTAG
*
16873407 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGACTAA
16873433 GCATACGGAGTTCATTCCC-AGACTAA
1 GCATACGGAGTTCA-TCCCTAGACTAA
16873459 G
1 G
16873460 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGACTAA
Found at i:16873741 original size:159 final size:158
Alignment explanation
Indices: 16873476--16874572 Score: 878
Period size: 159 Copynumber: 6.9 Consensus size: 158
16873466 CCAGACCGAA
* * * * * ** * ** *
16873476 GGTTGCGGCAGCAGGATCGACAGCACGCA-AGGAGGATCGAACCGGTCCCCAACTTGCGCATTCT
1 GGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTAT
* * * * * * * * *
16873540 ACCTCTCCGGTCGGCTGAGCGCCCGCACCCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCA
66 GCCTCTTCGGCCGGCTCAGCGCCCGCACGCCCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
*
16873605 TTCCATTTCTAAGCCCCAGTCGGACTGAG
131 TTCCATGTCTAAG-CCCAGTCGGACTGAG
* ** * * * * *
16873634 GGTTATGGCAATGGGACCGACAGCAAGCAAAGGGGGACCGGGCCGATCCCCGACTTACGCAATAT
1 GGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTAT
* * * *
16873699 GCCTCTTCAGCCGGCTCAGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCA
66 GCCTCTTCGGCCGGCTCAGCGCCCGCACGCCCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
** * *
16873764 TTCCCA-GTCTAAGATCAGACCGGACTGAA
131 TT-CCATGTCTAAGCCCAG-TCGGACTGAG
* ** * * * * * *
16873793 GGTTGCGGCAGTAGGATCGACAGCACGGAGTGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCT
1 GGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTAT
* ** * * * *
16873858 GCCTCTCCGGCCAACTGAGCGCCCGCACGGCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCA
66 GCCTCTTCGGCCGGCTCAGCGCCCGCACGCCCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
*
16873923 TTCCATGTCTAAGCCCCAGTCGGACAGAG
131 TTCCATGTCTAAG-CCCAGTCGGACTGAG
** * ** * * * *
16873952 GGTTGTGGCAGCGGGACCGGTAACACGCAGAGGGGGACTAGGTCAATCCGCGGCTTACGCATTAT
1 GGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTAT
** * *
16874017 GCCTCTTCGGTTGGCTCAGCGCCCGCACGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCA
66 GCCTCTTCGGCCGGCTCAGCGCCCGCACGCCCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
** * * *
16874082 TTCCCA-GTCTAAGATCTGATCAGACCGAG
131 TT-CCATGTCTAAGCCCAG-TCGGACTGAG
* * ** ** * *
16874111 GGTTGCGAC-GACAAGATTGACAGCACGCAGAGGGGGACTGGGCCGATCCCCGGCTTGCGCATTC
1 GGTTGTGGCAG-CGGGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTA
* * * * * * * * *
16874175 TGCCTCTCCGGTCGGCTGAGCACCCGGACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAATTC
65 TGCCTCTTCGGCCGGCTCAGCGCCCGCACGCCCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* *
16874240 ATTCCATGTCTAAGGCCCAGCCAGACTGAG
130 ATTCCATGTCTAA-GCCCAGTCGGACTGAG
* * * * * * *
16874270 GGTTATGGCAGCGAGACTGGCAGCACGCAGAGGGGGGATCAGGCCGATCCCCGACTTGCGCATTA
1 GGTTGTGGCAGCGGGACCGACAGCACGCAGA-GGGGGACCGGGCCGATCCCCGGCTTGCGCATTA
* * * *
16874335 TGCCTCTTCGGCCGGCTCAGTGCCCGCACGCACGTTTCATGAGTTGACTTAGGCATACGGAGTTC
65 TGCCTCTTCGGCCGGCTCAGCGCCCGCACGCCCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
** * *
16874400 ATTCCCA-GTCTAAGATCGGACCGGA-TCGAG
130 ATT-CCATGTCTAAGCCCAG-TCGGACT-GAG
** * ** * * ** * *
16874430 GGTTGTGGCAGCAAGATCGACAGCACATA-AGGGGGATCGGGTCGATCCCTAGCTTGTGCATTCT
1 GGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTAT
* * * ** * * * * *
16874494 ACCTC-TCTGGCCGGTTGAGCATCCGCACGCTCGTTTCATGGGTTGGCTTATGCATATGGAGTTC
66 GCCTCTTC-GGCCGGCTCAGCGCCCGCACGCCCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
16874558 ATTCCATGTCTAAGC
130 ATTCCATGTCTAAGC
16874573 ATATGGAGTT
Statistics
Matches: 742, Mismatches: 180, Indels: 34
0.78 0.19 0.04
Matches are distributed among these distances:
157 5 0.01
158 121 0.16
159 482 0.65
160 131 0.18
161 3 0.00
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (158 bp):
GGTTGTGGCAGCGGGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTGCGCATTAT
GCCTCTTCGGCCGGCTCAGCGCCCGCACGCCCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
TTCCATGTCTAAGCCCAGTCGGACTGAG
Found at i:16874011 original size:318 final size:317
Alignment explanation
Indices: 16873433--16874572 Score: 1431
Period size: 318 Copynumber: 3.6 Consensus size: 317
16873423 CCTAGTCTAA
* * *
16873433 GCATACGGAGTTCATTCCCAGACTAAGATTGGACCAGACCGAAGGTTGCGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAAGGTTGCGGCAGCAAGATCGACA
* ** * * * *
16873498 GCACGCAAGGAGGATCGAACCGGTCCCCAACTTGCGCATTCTACCTCTCCGGTCGGCTGAGCGCC
66 GCACGCAAGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGGCCGGCTGAGCACC
* * *
16873563 CGCACCCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATTTCTAAGCCCCAGTCGG
131 CGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGG
** * * * **
16873628 ACTGAGGGTTATGGCAATGGGACCGACAGCAAGCAAAGGGGGACCGGGCCGATCCCCGACTTACG
196 ACTGAGGGTTATGGCAGCGGGACCGGCAGCACGCAGAGGGGGACTAGGCCGATCCCCGACTTACG
* * *
16873693 CAATATGCCTCTTCAGCCGGCTCAGTGCCCGCACGCTCATTTCGTGGGTTGACTTAG
261 CATTATGCCTCTTCGGCCGGCTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * *
16873750 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAAGGTTGCGGCAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAAGGTTGCGGCAGCAAGATCGACA
* * * * * ** *
16873815 GCACGGAGTGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAACTGAGCGC
66 GCACGCA-AGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGGCCGGCTGAGCAC
* *
16873880 CCGCACGGCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCG
130 CCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCG
* * * * * * * *
16873945 GACAGAGGGTTGTGGCAGCGGGACCGGTAACACGCAGAGGGGGACTAGGTCAATCCGCGGCTTAC
195 GACTGAGGGTTATGGCAGCGGGACCGGCAGCACGCAGAGGGGGACTAGGCCGATCCCCGACTTAC
** * *
16874010 GCATTATGCCTCTTCGGTTGGCTCAGCGCCCGCACGCTCGTTTCGTTGGTTGACTTAG
260 GCATTATGCCTCTTCGGCCGGCTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * *
16874068 GCATACGGAGTTCATTCCCAGTCTAAGATCTGATCAGACCGAGGGTTGCGAC-GACAAGATTGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAAGGTTGCGGCAG-CAAGATCGAC
* * *
16874132 AGCACGCAGAGGGGGA-CTGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGC
65 AGCACGCA-AGGGGGATC-GGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGGCCGGCTGAGC
* ** * * *
16874196 ACCCGGACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAATTCATTCCATGTCTAAGGCCCAGC
128 ACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGT
* * *
16874261 CAGACTGAGGGTTATGGCAGCGAGACTGGCAGCACGCAGAGGGGGGA-TCAGGCCGATCCCCGAC
193 CGGACTGAGGGTTATGGCAGCGGGACCGGCAGCACGCAGA-GGGGGACT-AGGCCGATCCCCGAC
* * * *
16874325 TTGCGCATTATGCCTCTTCGGCCGGCTCAGTGCCCGCACGCACGTTTCATGAGTTGACTTAG
256 TTACGCATTATGCCTCTTCGGCCGGCTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * *
16874387 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGTGGCAGCAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAAGGTTGCGGCAGCAAGATCGACA
** * * * * * *
16874452 GCACATAAGGGGGATCGGGTCGATCCCTAGCTTGTGCATTCTACCTCTCTGGCCGGTTGAGCATC
66 GCACGCAAGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGGCCGGCTGAGCACC
* * *
16874517 CGCACGCTCGTTTCATGGGTTGGCTTATGCATATGGAGTTCATTCCATGTCTAAGC
131 CGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
16874573 ATATGGAGTT
Statistics
Matches: 703, Mismatches: 113, Indels: 13
0.85 0.14 0.02
Matches are distributed among these distances:
317 67 0.10
318 502 0.71
319 133 0.19
320 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (317 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAAGGTTGCGGCAGCAAGATCGACA
GCACGCAAGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGGCCGGCTGAGCACC
CGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCGG
ACTGAGGGTTATGGCAGCGGGACCGGCAGCACGCAGAGGGGGACTAGGCCGATCCCCGACTTACG
CATTATGCCTCTTCGGCCGGCTCAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:16874595 original size:26 final size:26
Alignment explanation
Indices: 16874545--16874597 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16874535 GTTGGCTTAT
**
16874545 GCATATGGAGTTCATTCCATGTCTAA
1 GCATATGGAGTTCATTCCACATCTAA
*
16874571 GCATATGGAGTTCATTCCCCATCTAA
1 GCATATGGAGTTCATTCCACATCTAA
16874597 G
1 G
16874598 ATCTTACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCACATCTAA
Found at i:16874964 original size:26 final size:26
Alignment explanation
Indices: 16874927--16874979 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16874917 GTTGACTTAG
16874927 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
16874953 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
16874979 G
1 G
16874980 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:16876184 original size:26 final size:26
Alignment explanation
Indices: 16876148--16876200 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16876138 GTTGACTTAG
*
16876148 GCATACGGAGTTCAACCCCAGTCTAA
1 GCATACAGAGTTCAACCCCAGTCTAA
**
16876174 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCAACCCCAGTCTAA
16876200 G
1 G
16876201 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCAACCCCAGTCTAA
Found at i:16876682 original size:26 final size:26
Alignment explanation
Indices: 16876653--16876702 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
16876643 GGCTTAGGCG
*
16876653 TACGAAGTTTATT-CCATGTCTAAGCA
1 TACGAAGTTCATTCCCA-GTCTAAGCA
*
16876679 TACGGAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
16876703 ATCGAATCGG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 18 0.86
27 3 0.14
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCA
Found at i:16884310 original size:26 final size:26
Alignment explanation
Indices: 16884281--16884333 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16884271 GTTGGCTTAG
16884281 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16884307 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16884333 G
1 G
16884334 ATTAGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16886190 original size:159 final size:157
Alignment explanation
Indices: 16885732--16886544 Score: 630
Period size: 159 Copynumber: 5.1 Consensus size: 157
16885722 TAAGCACATA
* *
16885732 GAGTTCATTCCCA-GTCTAAGATCAGATC-GAATCGAGGGTTACGACAGCAGGATCGACAGCACG
1 GAGTTCATT-CCATGTCTAAGATCAGATCAG-ACCGAGGGTTACGATAGCAGGATCGACAGCACG
* * * * * * * * **
16885795 CACGGGGGATCAGGCCGATCCCCGACTTGTGCATTCTGCCTCTCCGATCGGTTGATCACCAACAC
64 CACGGGGGATCGGGTCGAT-CCCGACTTGCGCATTATGCCTCTTCGGTCGGTTGAGCGCCCGCAC
* * * * *
16885860 ACCCGTTTCATGGGTTGGCTTAGGCATAGG
128 GCTCGTTTCGTGGGTTGACTTAGGCATACG
** * * ** *
16885890 GAGTTCATTCCATGTCTAAGCCCCA-ACCGGACTAAGGGTT--G-TAGCAGCGGGACCGACAGCA
1 GAGTTCATTCCATGTCTAAG-ATCAGATCAGACCGAGGGTTACGATAGCA---GGATCGACAGCA
* * * * *
16885951 CGTA-GAGAGGATCGGGTCGATCCTCGACTTGCGCATTATGCCTCTTCGGTCGGCTCAGCGCTCG
62 CGCACG-GGGGATCGGGTCGATCC-CGACTTGCGCATTATGCCTCTTCGGTCGGTTGAGCGCCCG
* *
16886015 CACGCTTGTTTTGTGGGTTGACTTAGGCATACG
125 CACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * * * * *
16886048 GAGTTCATTCCCA-GTCTAAGATCGGACCAGACCAAAGGTTACGATAGCAGGATCGGCAGCACGT
1 GAGTTCATT-CCATGTCTAAGATCAGATCAGACCGAGGGTTACGATAGCAGGATCGACAGCACGC
* ** * * *
16886112 AGGGGGGGATTAGGTCGATCTCCGACTTGCGCATTCTACCTCTTCGGTTGGTTGAGCGCCCGCAC
65 A-CGGGGGATCGGGTCGATC-CCGACTTGCGCATTATGCCTCTTCGGTCGGTTGAGCGCCCGCAC
* * * *
16886177 GCCCGTTTCGTGGGTTGGCTTAAGCATAGG
128 GCTCGTTTCGTGGGTTGACTTAGGCATACG
* * ** ** * **
16886207 GAGTTCATTCCATGTCTAAGCCTCA-ATCAAACCGAGGGTTGTGGCAGCGGGATCGACAGCATAC
1 GAGTTCATTCCATGTCTAAG-ATCAGATCAGACCGAGGGTTACGATAGCAGGATCGACAGCACGC
* * * * * *
16886271 A-GAGGAGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTCAGTCGGCTT-AGTGCCCAC
65 ACG-GG-GGATCGGGTCGAT-CCCGACTTGCGCATTATGCCTCTTCGGTCGG-TTGAGCGCCCGC
* *
16886334 ATGCTCGTTTTGTGGGTTGACTTAGGCATACG
126 ACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * *
16886366 GAGTTCATTCCCA-GTCTAAGATCAGATCAAACCGAGGGTTGCGGTAGCAGGATCGACAGCACGC
1 GAGTTCATT-CCATGTCTAAGATCAGATCAGACCGAGGGTTACGATAGCAGGATCGACAGCACGC
* * * * * * *
16886430 AACGAGGGA-CTGGGTCGATCCCTGACTTGTGCATTTTGCCTCTCCGAT-GGACTGACCGCCCGC
65 -ACGGGGGATC-GGGTCGATCCC-GACTTGCGCATTATGCCTCTTCGGTCGG-TTGAGCGCCCGC
* *
16886493 ACACTCGTTTCATGGGTT-AGCTTAGGCATACG
126 ACGCTCGTTTCGTGGGTTGA-CTTAGGCATACG
16886525 GAGTTCATTCCATGTCTAAG
1 GAGTTCATTCCATGTCTAAG
16886545 CATACGGAGT
Statistics
Matches: 516, Mismatches: 108, Indels: 61
0.75 0.16 0.09
Matches are distributed among these distances:
155 4 0.01
156 1 0.00
157 8 0.02
158 167 0.32
159 317 0.61
160 13 0.03
161 6 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (157 bp):
GAGTTCATTCCATGTCTAAGATCAGATCAGACCGAGGGTTACGATAGCAGGATCGACAGCACGCA
CGGGGGATCGGGTCGATCCCGACTTGCGCATTATGCCTCTTCGGTCGGTTGAGCGCCCGCACGCT
CGTTTCGTGGGTTGACTTAGGCATACG
Found at i:16886448 original size:318 final size:315
Alignment explanation
Indices: 16885732--16886545 Score: 1011
Period size: 318 Copynumber: 2.6 Consensus size: 315
16885722 TAAGCACATA
* * *
16885732 GAGTTCATTCCCAGTCTAAGATCAGATCGAATCGAGGGTTACGACAGCAGGATCGACAGCACGC-
1 GAGTTCATTCCCAGTCTAAGATCAGATCAAACCGAGGGTTACGATAGCAGGATCGACAGCACGCA
* * * * * * **
16885796 ACGGGGGATCAGGCCGATCCCCGACTTGTGCATTCTGCCTCTCCGATCGGTTGATCACCAACACA
66 ACGGGGGAT-AGGTCGAT-CCCGACTTGTGCATTCTGCCTCTTCGGTTGGTTGACCGCCCGCACA
** *
16885861 CCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACTAAG
129 CCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAAACCAAG
** * * *
16885926 GGTTGTAGCAGCGGGACCGACAGCACGTAGAGAGGATCGGGTCGATCCTCGACTTGCGCATTATG
194 GGTTGTAGCAGCGGGACCGACAGCACACAGAGAGGACCGGGCCGATCCCCGACTTGCGCATTATG
* * * *
16885991 CCTCTTCGGTCGGCTCAGCGCTCGCACGCTTGTTTTGTGGGTTGACTTAGGCATACG
259 CCTCTTCAGTCGGCTCAGCGCCCACACGCTCGTTTTGTGGGTTGACTTAGGCATACG
* * * * * * *
16886048 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAAGGTTACGATAGCAGGATCGGCAGCACGTA
1 GAGTTCATTCCCAGTCTAAGATCAGATCAAACCGAGGGTTACGATAGCAGGATCGACAGCACGCA
** * * * *
16886113 GGGGGGGATTAGGTCGATCTCCGACTTGCGCATTCTACCTCTTCGGTTGGTTGAGCGCCCGCACG
66 ACGGGGGA-TAGGTCGATC-CCGACTTGTGCATTCTGCCTCTTCGGTTGGTTGACCGCCCGCACA
* * * * *
16886178 CCCGTTTCGTGGGTTGGCTTAAGCATAGGGAGTTCATTCCATGTCTAAGCCTCAATCAAACCGAG
129 CCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAAACCAAG
* * * *
16886243 GGTTGTGGCAGCGGGATCGACAGCATACAGAGGAGGACCGGGCCGATCCCCGGCTTGCGCATTAT
194 GGTTGTAGCAGCGGGACCGACAGCACACAGA-GAGGACCGGGCCGATCCCCGACTTGCGCATTAT
* * *
16886308 GCCTCTTCAGTCGGCTTAGTGCCCACATGCTCGTTTTGTGGGTTGACTTAGGCATACG
258 GCCTCTTCAGTCGGCTCAGCGCCCACACGCTCGTTTTGTGGGTTGACTTAGGCATACG
* *
16886366 GAGTTCATTCCCAGTCTAAGATCAGATCAAACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCA
1 GAGTTCATTCCCAGTCTAAGATCAGATCAAACCGAGGGTTACGATAGCAGGATCGACAGCACGCA
* * * * * *
16886431 ACGAGGGACTGGGTCGATCCCTGACTTGTGCATTTTGCCTC-TCCGATGGACTGACCGCCCGCAC
66 ACGGGGGA-TAGGTCGATCCC-GACTTGTGCATTCTGCCTCTTCGGTTGG-TTGACCGCCCGCAC
* * *
16886495 ACTCGTTTCATGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
128 ACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
16886546 ATACGGAGTT
Statistics
Matches: 418, Mismatches: 74, Indels: 10
0.83 0.15 0.02
Matches are distributed among these distances:
316 55 0.13
317 139 0.33
318 224 0.54
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (315 bp):
GAGTTCATTCCCAGTCTAAGATCAGATCAAACCGAGGGTTACGATAGCAGGATCGACAGCACGCA
ACGGGGGATAGGTCGATCCCGACTTGTGCATTCTGCCTCTTCGGTTGGTTGACCGCCCGCACACC
CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCAAACCAAGGG
TTGTAGCAGCGGGACCGACAGCACACAGAGAGGACCGGGCCGATCCCCGACTTGCGCATTATGCC
TCTTCAGTCGGCTCAGCGCCCACACGCTCGTTTTGTGGGTTGACTTAGGCATACG
Found at i:16886548 original size:26 final size:26
Alignment explanation
Indices: 16886518--16886570 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16886508 GTTAGCTTAG
16886518 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16886544 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16886570 G
1 G
16886571 ATTGGACCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16888081 original size:159 final size:159
Alignment explanation
Indices: 16887620--16888122 Score: 460
Period size: 159 Copynumber: 3.2 Consensus size: 159
16887610 CCCTATCTAA
* * * * * *
16887620 GCATACAGAGTTCATTCCCA-GTCGAAGATCGGACCGGATCGAGGGTTGTGGTAGCAGGATCGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATTGGATCGGATCGAGGGTTGTGGCAGCAGGATCGAC
* * * * * * *
16887684 AGCACGCA-GAGAGGACCGGGTTGATCCCCAGCTTACGCATTC-AGCCTCTCCGATCGACTGAGC
65 AGCACGCAGGAGGGGACTGGGTCGATCCCCGGCTTGCGCATTCTA-CCTCTCCGGTCGGCTGAGC
* * * *
16887747 GCCTGCACGCCCATTTCATGGGTTGGCTTAG
129 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
* *** * * * * *
16887778 GCATAGGGAGTTCATTCCATGTCTAATCCCTAGCT-GGACCGAGGGTTGTGGCAGCGGGACCGAC
1 GCATACGGAGTTCATTCCATGTCTAA-GATTGGATCGGATCGAGGGTTGTGGCAGCAGGATCGAC
* * * * * * ** * *
16887842 AGCACACAGAAGGGGA-TCGGGCCGATCTCCGGCTTGCGCATTATGCCTCTTGGGTCGGCTCAAC
65 AGCACGCAGGAGGGGACT-GGGTCGATCCCCGGCTTGCGCATTCTACCTCTCCGGTCGGCTGAGC
* * * * *
16887906 GCTCGCAGGCTTGTTTCGTGGGTTGACTTAT
129 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
** *
16887937 GCATACGGAGTTCATTCCCA-GTCTAAGATTGGATCGGATCGAGGGTTGCAGCAGTAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATTGGATCGGATCGAGGGTTGTGGCAGCAGGATCGAC
* *
16888001 AGCACGCAGGGGGGGACTGGGTCGATCCCCGGCTTGCGCATTCTACCTCTCCGGTCGGTTGAGCG
65 AGCACGCAGGAGGGGACTGGGTCGATCCCCGGCTTGCGCATTCTACCTCTCCGGTCGGCTGAGCG
* ***
16888066 CCCGTACGCTCGTTTCGCATGTTGGCTTAG
130 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
*
16888096 GAATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
16888123 CATACGCAGT
Statistics
Matches: 261, Mismatches: 75, Indels: 17
0.74 0.21 0.05
Matches are distributed among these distances:
157 3 0.01
158 56 0.21
159 198 0.76
160 4 0.02
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCATGTCTAAGATTGGATCGGATCGAGGGTTGTGGCAGCAGGATCGACA
GCACGCAGGAGGGGACTGGGTCGATCCCCGGCTTGCGCATTCTACCTCTCCGGTCGGCTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGGCTTAG
Found at i:16888492 original size:26 final size:26
Alignment explanation
Indices: 16888462--16888514 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16888452 GTTGACTTAG
*
16888462 GCATATAGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* * *
16888488 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
16888514 G
1 G
16888515 ATCAAACCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:16888798 original size:159 final size:154
Alignment explanation
Indices: 16888568--16888978 Score: 403
Period size: 159 Copynumber: 2.6 Consensus size: 154
16888558 CAACGAGGCC
* * * * * * * *
16888568 CGAGTCGATCCTCGGCTTACGCATTCTGCCTCTTCGATCGACTGAGCACCCGCACACCCGTTTCA
1 CGAGGCGATCC-CCGCTTGCGCATTCTGCCTCTTCGACCG-CTGAGCGCCCGCACGCTCGTTTCG
* * * * *
16888633 TGGGTTGGCTTAGGCATAGGGAGTTCATTCTGTGTCTAAGCCCCAG-CCAGACTGAGGGTTATAG
64 TGGGTTGACTTAGGCATATGGAGTTCATTCTAT-TCTAAG-ACCAGACCAGACCGAGGGTTAT-G
**
16888697 G-AGTGGGACCGACAGCACGCAGAGGGGGA
126 GCAGCAGGACCGACAGCACGCAG-GGGGGA
* * *
16888726 CTAGGCTGATCCCCAGCTTGCGCATTATGCCTCTTCGACCAGCTCAGCGCCCGCACGCTCGTTTC
1 CGAGGC-GATCCCC-GCTTGCGCATTCTGCCTCTTCGACC-GCTGAGCGCCCGCACGCTCGTTTC
* * ** *
16888791 GTGGGTTGACTTATGCAAATGGAGTTCATTCCTATTCTAAGATTAGACCAGACCGAGGGTTGTGG
63 GTGGGTTGACTTAGGCATATGGAGTTCATT-CTATTCTAAGACCAGACCAGACCGAGGGTTATGG
* * *
16888856 CAGCAGGATCGACAGCATGCAGGGGGGC
127 CAGCAGGACCGACAGCACGCAGGGGGGA
* * * * **
16888884 CGAGTCGATCCCCGACTTGTGCATTCGGCCTCTCCGACCTGCTGAGCGCTTGCACGCTCGTTTCG
1 CGAGGCGATCCCCG-CTTGCGCATTCTGCCTCTTCGACC-GCTGAGCGCCCGCACGCTCGTTTCG
*
16888949 TGTGTTGACTTAGGCATATGGAGTTCATTC
64 TGGGTTGACTTAGGCATATGGAGTTCATTC
16888979 CATGTCTAGC
Statistics
Matches: 207, Mismatches: 39, Indels: 16
0.79 0.15 0.06
Matches are distributed among these distances:
156 2 0.01
157 75 0.36
158 18 0.09
159 108 0.52
160 4 0.02
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.25
Consensus pattern (154 bp):
CGAGGCGATCCCCGCTTGCGCATTCTGCCTCTTCGACCGCTGAGCGCCCGCACGCTCGTTTCGTG
GGTTGACTTAGGCATATGGAGTTCATTCTATTCTAAGACCAGACCAGACCGAGGGTTATGGCAGC
AGGACCGACAGCACGCAGGGGGGA
Found at i:16889722 original size:26 final size:26
Alignment explanation
Indices: 16889683--16889735 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16889673 GTTGACTTAG
*
16889683 GCATACGGAGTTCA-TCCTCAGTCTAA
1 GCATACGGACTTCATTCC-CAGTCTAA
*
16889709 GCATATGGACTTCATTCCCAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
16889735 G
1 G
16889736 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGACTTCATTCCCAGTCTAA
Found at i:16890013 original size:159 final size:159
Alignment explanation
Indices: 16889784--16890251 Score: 428
Period size: 159 Copynumber: 2.9 Consensus size: 159
16889774 GCATGCAGTG
* * * * * **
16889784 GGGACCGGG-TCGATCCCCGCCTTGCACATTC-TGCCTCTCCGGCCAGCTGAGCGCCTACACGC-
1 GGGACCGGGCT-GATCCCCGGCTTGCGCA-TCATGCCTCTCCAGCCGGCTCAGCGCCCGCACGCT
*
16889846 CTGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGG
64 C-GTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGG
*
16889911 GTTGTGGCAGC-GAGACCGACAGCACGTAAAAA
128 GTTGTGGCAGCAG-GACCGACAGCACGCAAAAA
* ** * * * ** *
16889943 GGGACCGAG-TCGATCTTCGGCTTGCGCATTATGCCTCTTCGGTTGGCTCAGTGCCCGCACGCTC
1 GGGACCGGGCT-GATCCCCGGCTTGCGCATCATGCCTCTCCAGCCGGCTCAGCGCCCGCACGCTC
* ** * *
16890007 GTTTCATGGGTTGACTTAGGCATAAGGAGTTCATTCCCA-GTCTAAG-ATCGGATCAGACCGAGG
65 GTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATT-CCATGTCTAAGCCCCAG-CCAGACCGAGG
** * * ****
16890070 GTTACGGTAGCAGGATCGACAGCACGCAGTGG
128 GTTGTGGCAGCAGGACCGACAGCACGCAAAAA
* * * * * *
16890102 GGGATCGGGCTGATCCCCGGCTTGTGCATCATGCCTCTCCAGCCGGTTGAGCGCCCGCACTCTCT
1 GGGACCGGGCTGATCCCCGGCTTGCGCATCATGCCTCTCCAGCCGGCTCAGCGCCCGCACGCTCG
* * * * * *
16890167 TTTCATGGGATGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAAGGTT
66 TTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTT
*
16890232 GTGGCAGCAGGATCGACAGC
131 GTGGCAGCAGGACCGACAGC
16890252 GGGATCGGTA
Statistics
Matches: 243, Mismatches: 58, Indels: 16
0.77 0.18 0.05
Matches are distributed among these distances:
158 6 0.02
159 230 0.95
160 7 0.03
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.22
Consensus pattern (159 bp):
GGGACCGGGCTGATCCCCGGCTTGCGCATCATGCCTCTCCAGCCGGCTCAGCGCCCGCACGCTCG
TTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGGTT
GTGGCAGCAGGACCGACAGCACGCAAAAA
Found at i:16890724 original size:157 final size:158
Alignment explanation
Indices: 16890396--16890736 Score: 371
Period size: 157 Copynumber: 2.2 Consensus size: 158
16890386 CCAGTCTAAA
* * * * **
16890396 CATATGGAGTTCACTCCCAGTCTAAGATCGGATCGGATCGAAGGTTACGACAGCAAGATCGGTAG
1 CATACGGAGTTCATTCCTAGTCTAAGATCGGATCGGACCGAAGGTTACGACAGCAAGATCGACAG
** * * * * * * *
16890461 CACGCAGGGGGGACCAGTCTGCTCCCTGGCTTAGGCATTATGCCTCTTCGATCGACTCAGCGCCT
66 CACGCAGAAGGGACCAGACCGATCCCTGGCTTACGCATTATACCTCTTCGATCGACTCAACGCCC
* * * *
16890526 GTACGCTCGTTTCGTGGGTTAACTTATG
131 GCACGCCCATTTCGTGGGTTAACTTAGG
* * * * *
16890554 CATACAGAGTTCATTCCTAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCAGGATTGACAG
1 CATACGGAGTTCATTCCTAGTCTAAGATCGGATCGGACCGAAGGTTACGACAGCAAGATCGACAG
* * * * * *
16890619 CACGCAGAAGTGACCA-ACCGATCCCTGGCTTACGTATTCTACCTCTTCGATCGGCTGAATGCCC
66 CACGCAGAAGGGACCAGACCGATCCCTGGCTTACGCATTATACCTCTTCGATCGACTCAACGCCC
**
16890683 GCACGCCCATTTCGTGGGTTGGCTTAGG
131 GCACGCCCATTTCGTGGGTTAACTTAGG
16890711 CATACGGAGTTCATT-CTATGTCTAAG
1 CATACGGAGTTCATTCCTA-GTCTAAG
16890737 CATACAGAGT
Statistics
Matches: 149, Mismatches: 33, Indels: 3
0.81 0.18 0.02
Matches are distributed among these distances:
156 3 0.02
157 79 0.53
158 67 0.45
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.25
Consensus pattern (158 bp):
CATACGGAGTTCATTCCTAGTCTAAGATCGGATCGGACCGAAGGTTACGACAGCAAGATCGACAG
CACGCAGAAGGGACCAGACCGATCCCTGGCTTACGCATTATACCTCTTCGATCGACTCAACGCCC
GCACGCCCATTTCGTGGGTTAACTTAGG
Found at i:16890746 original size:26 final size:26
Alignment explanation
Indices: 16890710--16890762 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16890700 GTTGGCTTAG
*
16890710 GCATACGGAGTTCATT-CTATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
16890736 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
16890762 G
1 G
16890763 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:16891547 original size:159 final size:155
Alignment explanation
Indices: 16891068--16891585 Score: 432
Period size: 159 Copynumber: 3.3 Consensus size: 155
16891058 GAGCACCTGT
** *
16891068 ATGCTCGTTTCGTGGGTTGACTTAGGCATACGGACATCATTCCCAGTCTAAGATCAGACCGGACC
1 ATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACC
* * * * * * * * *
16891133 GAGGGTTGTGATAGTGAGATC-AGCAGCATGCAGGGGGATCGAGCCAATCTCTGGCTTACGCATT
66 GAGGGTTGTGGTAG-CAGATCGA-CAGCATGCAGGGGGATTGGGTCGATCCCCGACTTACGCATT
* * *
16891197 CTGCCTCTCTAGCCGGTTGAACGCTCGC
129 ATGCCTCTC-AACCGGTTGAGCGCTCGC
* * * * ** *
16891225 ACGCTCGTTTCGTGGGTAGGCTTAGGCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-TCGAA
1 ATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATCGGA
* * * * * * *
16891288 CTGAGGGTTGTGGCAGCGGAACCGATAGCATGCAGAGGGGGACTGGGTCGATCCCCGACTTGCGC
64 CCGAGGGTTGTGGTAGCAG-ATCGACAGCATGC--AGGGGGATTGGGTCGATCCCCGACTTACGC
** * * *
16891353 ATTATGCCTCTTCAACCGACTCAGTGC-CTGG
126 ATTATGCCTC-TCAACCGGTTGAGCGCTC-GC
* * * *
16891384 ATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGATTGGACC
1 ATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACC
* * * *
16891449 AAGGGTTATGGTAGCAAGATCGACAGCACGCAGTGGGCGATTGGGTCGGTCCCCGACTTACGCAT
66 GAGGGTTGTGGTAGC-AGATCGACAGCATGCAG-GGG-GATTGGGTCGATCCCCGACTTACGCAT
* * *
16891514 TTTGTCTCTCCGACCGGTTGAGCGCTCGC
128 TATGCCTCT-CAACCGGTTGAGCGCTCGC
* ** * *
16891543 ATGCTTGTTTTATGGGTTGGCTTAGGCATACGGATTTCATTCC
1 ATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
16891586 ATGTTTAAGC
Statistics
Matches: 276, Mismatches: 70, Indels: 28
0.74 0.19 0.07
Matches are distributed among these distances:
156 4 0.01
157 69 0.25
158 11 0.04
159 185 0.67
160 7 0.03
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.26
Consensus pattern (155 bp):
ATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACC
GAGGGTTGTGGTAGCAGATCGACAGCATGCAGGGGGATTGGGTCGATCCCCGACTTACGCATTAT
GCCTCTCAACCGGTTGAGCGCTCGC
Found at i:16891620 original size:26 final size:26
Alignment explanation
Indices: 16891568--16891620 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16891558 GTTGGCTTAG
* *
16891568 GCATACGGATTTCATTCCATGTTTAA
1 GCATACGGAGTTCATTCCATGTCTAA
16891594 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
16891620 G
1 G
16891621 ATTAGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:16892051 original size:11 final size:11
Alignment explanation
Indices: 16892035--16892059 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
16892025 GGGCACCATT
16892035 GTCGGAGCATC
1 GTCGGAGCATC
16892046 GTCGGAGCATC
1 GTCGGAGCATC
16892057 GTC
1 GTC
16892060 AGAGAGCCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.28, G:0.36, T:0.20
Consensus pattern (11 bp):
GTCGGAGCATC
Found at i:16892655 original size:26 final size:26
Alignment explanation
Indices: 16892626--16892678 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16892616 GTTGATTTAG
*
16892626 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
**
16892652 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
16892678 G
1 G
16892679 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:16893132 original size:158 final size:156
Alignment explanation
Indices: 16892649--16893153 Score: 469
Period size: 158 Copynumber: 3.2 Consensus size: 156
16892639 ATCCCCAGTC
* * *
16892649 TAAGCATACGGAGTTCATTTCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGATAGCAGGATCG
1 TAAGCATACGGAGTTCA-TTCCAGTCTAAGATCGGATCGAACCGAGGGTTGTGGTAGCAGGATCG
** * * *
16892714 GTAACACGCAGGGGGGA-CCGAGCCAATCCCCGGCTTGCACATTCTGCCTCTCCT-ACCGGCTGA
65 ACAACACGCAGGGGGGATCAG-GCCGATCCCCGGCTTG-TCATTCTGCCTCT-CTGACCGGCTGA
* * *
16892777 GTGCCCACACACCCGTTTCATGGGTTGGCT
127 GCGCCCACACACTCATTTCATGGGTTGGCT
* * * ** * *
16892807 TAGGCATAGGGAGTTCATTCCATGTCTAAG-CCCCAGTCGAACCGAGGGTTGTGGTAGCGGGACC
1 TAAGCATACGGAGTTCATTCCA-GTCTAAGATCGGA-TCGAACCGAGGGTTGTGGTAGCAGGATC
* * * * ** *
16892871 GACAGCATGCAGAGGGGGATCGGGCCGATCCCCGGCTTGCTCATTATGCCTCTCTGGTCGGCTCA
64 GACAACACGCAG-GGGGGATCAGGCCGATCCCCGGCTTG-TCATTCTGCCTCTCTGACCGGCTGA
* ** ** *
16892936 GCGCTCGA-ATGCTCATTTTGTGGGTTGACT
127 GCGC-CCACACACTCATTTCATGGGTTGGCT
* * * * *
16892966 TAGGCATACGGAGTACATTCCCAATCTAAGATCGGATCGAACCGAGGGTTGTGGCAGTAGGATCG
1 TAAGCATACGGAGTTCATT-CCAGTCTAAGATCGGATCGAACCGAGGGTTGTGGTAGCAGGATCG
* ** * ** *
16893031 ACAACACGTAGGGGGGATCAGGTTGGTCCTTGGCTTGTGCATTCTGCCTCTCTGACCAGCTGAGC
65 ACAACACGCAGGGGGGATCAGGCCGATCCCCGGCTTGT-CATTCTGCCTCTCTGACCGGCTGAGC
*
16893096 GCCTACACACTCATTTCATGGGTTGGCT
129 GCCCACACACTCATTTCATGGGTTGGCT
*
16893124 TAAGCATACGGAGTTTATTCCATGTCTAAG
1 TAAGCATACGGAGTTCATTCCA-GTCTAAG
16893154 CATACGAAGT
Statistics
Matches: 272, Mismatches: 64, Indels: 22
0.76 0.18 0.06
Matches are distributed among these distances:
157 13 0.05
158 137 0.50
159 113 0.42
160 9 0.03
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (156 bp):
TAAGCATACGGAGTTCATTCCAGTCTAAGATCGGATCGAACCGAGGGTTGTGGTAGCAGGATCGA
CAACACGCAGGGGGGATCAGGCCGATCCCCGGCTTGTCATTCTGCCTCTCTGACCGGCTGAGCGC
CCACACACTCATTTCATGGGTTGGCT
Found at i:16893618 original size:367 final size:367
Alignment explanation
Indices: 16892930--16893729 Score: 982
Period size: 367 Copynumber: 2.2 Consensus size: 367
16892920 CTCTCTGGTC
* * * * *
16892930 GGCTCAGCGCTCGAATGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTACATTCCCAATCTAA
1 GGCTGAGCGCCCGAATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAA
** * *** * * * *
16892995 GATCGGATCGAACCGAGGGTTGTGGCAGTAGGATCGACAACACGTAGGGGGGATCAGGTTGGTCC
66 GATCAAACCGAACCGAGGGTTACAGCAGCAGGATCGACAACACGTAGGAGGCATCAGGTCGGTCC
** * *
16893060 TTGGCTTGTGCATTCTGCCTCTCTGACCAGCTGAGCGCCTACACACTCATTTCATGGGTTGGCTT
131 TCAGCTTGTGCATTCTACCTCTCTGACCAGCTGAGCGCCCACACACTCATTTCATGGGTTGGCTT
* * * *
16893125 AAGCATACGGAGTTTATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTATGATCAGATCGG
196 AAGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAG
* * *
16893190 ATTGAGGGTTACGATAGTAGGACCAACAGCAGAATCGGTAGCACGCAAGGGGCACCGGGCCAATC
261 ACTGAGGGTTACGATAGCAGGACCAACAGCAGAATCGATAGCACGCAAGGGGCACCGGGCCAATC
* * *
16893255 CCTGGCTTGCACATTTTGCCTCTTCGGTCGGCCTCT-TCGACA
326 CCTGGCTTGCACATTCTGCCTCTCCGATCGGCCTCTCT-GACA
* *
16893297 GGCTGAGCGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAA
1 GGCTGAGCGCCCGAATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAA
* * * ** *
16893362 GATCAAACC-AGACTGAGGGTTACAGTAGCAGGATTGACGGCACGTAGGAGGCA-CTGAGTCGGT
66 GATCAAACCGA-ACCGAGGGTTACAGCAGCAGGATCGACAACACGTAGGAGGCATCAG-GTCGGT
* * * * * *
16893425 CCTCAGCTTGTGTATTCTACCTCTAC-GGCCAGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGG
129 CCTCAGCTTGTGCATTCTACCTCT-CTGACCAGCTGAGCGCCCACACACTCATTTCATGGGTTGG
* * *
16893489 CTTAGGCATACGGAGTTCATTCCATGTCTATGCATAC-AGAGTTCATTCCCAGTCTAAGATCGGA
193 CTTAAGCATACGGAGTTCATTCCATGTCTAAGCATACGA-AGTTCATTCCCAGTCTAAGATCAGA
* * * * * *
16893553 CCAGACTGAGGGTTACGGTAGCAGGACCAGCAGCAGTATCGATAGCACGCAGGGGGGATCGGGCC
257 CCAGACTGAGGGTTACGATAGCAGGACCAACAGCAGAATCGATAGCACGCAAGGGGCACCGGGCC
*
16893618 AATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGGCCTCTCTGACA
322 AATCCCTGGCTTGCACATTCTGCCTCTCCGATCGGCCTCTCTGACA
* * * * *
16893664 GGTTGAGCGCCC-ATACGCTCGTTTCATGGGTTGACTTAGGCGTACGGAGTTCATCCCCAATCTA
1 GGCTGAGCGCCCGA-ATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTA
16893728 AG
65 AG
16893730 CATATGGTGT
Statistics
Matches: 367, Mismatches: 60, Indels: 12
0.84 0.14 0.03
Matches are distributed among these distances:
366 4 0.01
367 361 0.98
368 2 0.01
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (367 bp):
GGCTGAGCGCCCGAATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAA
GATCAAACCGAACCGAGGGTTACAGCAGCAGGATCGACAACACGTAGGAGGCATCAGGTCGGTCC
TCAGCTTGTGCATTCTACCTCTCTGACCAGCTGAGCGCCCACACACTCATTTCATGGGTTGGCTT
AAGCATACGGAGTTCATTCCATGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAG
ACTGAGGGTTACGATAGCAGGACCAACAGCAGAATCGATAGCACGCAAGGGGCACCGGGCCAATC
CCTGGCTTGCACATTCTGCCTCTCCGATCGGCCTCTCTGACA
Found at i:16894189 original size:11 final size:11
Alignment explanation
Indices: 16894175--16894199 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
16894165 ACCATCACCA
16894175 GAGCATCGTCG
1 GAGCATCGTCG
16894186 GAGCATCGTCG
1 GAGCATCGTCG
16894197 GAG
1 GAG
16894200 AGCCTAACAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.20, C:0.24, G:0.40, T:0.16
Consensus pattern (11 bp):
GAGCATCGTCG
Found at i:16894810 original size:26 final size:26
Alignment explanation
Indices: 16894780--16894832 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16894770 GTTAACTTAG
*
16894780 GCATACGAAGTTCATCCCCATTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
16894806 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
16894832 G
1 G
16894833 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:16895126 original size:159 final size:159
Alignment explanation
Indices: 16894959--16895308 Score: 359
Period size: 159 Copynumber: 2.2 Consensus size: 159
16894949 CGTGGGTTGG
* * * * * **
16894959 CTTAGGCATA-GGCAGTTCATTCCATGTCTATGCCCCA-ATCGGACCGAGGGTTGTGGTAGTGGG
1 CTTAGGCATACAG-AGTTCATTCCATGTCTAAG-ACCAGACCAGACCGAGGGTTGTGGTAGCAGG
* * *
16895022 ATCGACATCACGCAGAGGGGGACCAGAT-CGATCCCCAACTTGCGCATTATGCCTCTCCG-GTCG
64 ATCGACAGCACGCAGAGGGGGACC-GATCCGATCCCCAACTTGCACATTATACCTCTCCGAG-CG
* * *
16895085 GTTCAGTGCCCGAACGCTTGTTTCATGGGTTAA
127 GCTAAGTGCCCGAACGCTCGTTTCATGGGTTAA
* * * *
16895118 CTTAGGCATATAGAGTTCATTACCA-ATCTAAGATCAGACCAGACCGAGGGTTGTTGTAGCAGGA
1 CTTAGGCATACAGAGTTCATT-CCATGTCTAAGACCAGACCAGACCGAGGGTTGTGGTAGCAGGA
* * * * * ** * *
16895182 TCGACAGCACGTAGAGTGGGATCGGTCCGGTCCCCGGCTTGCACATTCTACCTCTCTGAGCGGCT
65 TCGACAGCACGCAGAGGGGGACCGATCCGATCCCCAACTTGCACATTATACCTCTCCGAGCGGCT
* **
16895247 AAGTGCCCGTACGCTCGTTTCATGGGTTGG
130 AAGTGCCCGAACGCTCGTTTCATGGGTTAA
16895277 CTTAGGCATACAGAGTTCATTCCATGTCTAAG
1 CTTAGGCATACAGAGTTCATTCCATGTCTAAG
16895309 CATACGAAGT
Statistics
Matches: 155, Mismatches: 30, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
158 7 0.05
159 143 0.92
160 5 0.03
ACGTcount: A:0.21, C:0.25, G:0.27, T:0.26
Consensus pattern (159 bp):
CTTAGGCATACAGAGTTCATTCCATGTCTAAGACCAGACCAGACCGAGGGTTGTGGTAGCAGGAT
CGACAGCACGCAGAGGGGGACCGATCCGATCCCCAACTTGCACATTATACCTCTCCGAGCGGCTA
AGTGCCCGAACGCTCGTTTCATGGGTTAA
Found at i:16895312 original size:26 final size:26
Alignment explanation
Indices: 16895282--16895334 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
16895272 GTTGGCTTAG
16895282 GCATAC-AGAGTTCATT-CCATGTCTAA
1 GCATACGA-AGTTCATTCCCA-GTCTAA
16895308 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16895334 G
1 G
16895335 ATCTGACCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16895522 original size:26 final size:26
Alignment explanation
Indices: 16895492--16895544 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16895482 GTTGACTTAG
16895492 GCATACAAAGTTCATCCCTAGTCTAA
1 GCATACAAAGTTCATCCCTAGTCTAA
* *
16895518 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAAAGTTCATCCCTAGTCTAA
16895544 G
1 G
16895545 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCTAGTCTAA
Found at i:16895832 original size:159 final size:158
Alignment explanation
Indices: 16895518--16895862 Score: 367
Period size: 159 Copynumber: 2.2 Consensus size: 158
16895508 CCTAGTCTAA
* * ** * * **
16895518 GCATACAGAGTTCATTCC-TAGTCTAAGAT-CAGACTGGATCGAGGGTTGCGACAGCAGGATCGA
1 GCATACGGAGTTCATTCCAT-GTCTAAGCTCCAG-CCAGATTGAGGGTTGTGGTAGCAGGATCGA
* ** * *
16895581 CAGCACGTAGGAGAGATTGGGTCGATCTCCGGCTTGCATATTCTACCTCTCCGGCCGGTTGAATG
64 CAGCACGCAGGAGAGACCGGGTCGATCCCCGGCTTGCACATTCTACCTCTCCGGCCGGTTGAATG
*
16895646 CCCGCATGCCTGTTTCATGGGTTGGCTTAG
129 CCCGCACGCCTGTTTCATGGGTTGGCTTAG
* * *
16895676 GCGTAGGGAGTTCATTCCATGTCTAAGCTCCAGCCAGATTGAGGGTTGTGGTAGCAGGATCGATA
1 GCATACGGAGTTCATTCCATGTCTAAGCTCCAGCCAGATTGAGGGTTGTGGTAGCAGGATCGACA
* * * *
16895741 GCACGCAGAGAGGGACCGGG-CTGATCCCCGGCTTGCGCATTCTGCCTTTCCGGCCGGTTG-A-G
66 GCACGCAG-GAGAGACCGGGTC-GATCCCCGGCTTGCACATTCTACCTCTCCGGCCGGTTGAATG
* **
16895803 CACCTGCACGCTTGTTTTGTGGGTTGGCTTAG
129 C-CC-GCACGCCTGTTTCATGGGTTGGCTTAG
* *
16895835 GTATACGGAGTTCATTCCATTTCTAAGC
1 GCATACGGAGTTCATTCCATGTCTAAGC
16895863 ATACAGAGTT
Statistics
Matches: 153, Mismatches: 28, Indels: 11
0.80 0.15 0.06
Matches are distributed among these distances:
157 2 0.01
158 59 0.39
159 92 0.60
ACGTcount: A:0.19, C:0.24, G:0.30, T:0.27
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGCTCCAGCCAGATTGAGGGTTGTGGTAGCAGGATCGACA
GCACGCAGGAGAGACCGGGTCGATCCCCGGCTTGCACATTCTACCTCTCCGGCCGGTTGAATGCC
CGCACGCCTGTTTCATGGGTTGGCTTAG
Found at i:16898110 original size:26 final size:26
Alignment explanation
Indices: 16898074--16898126 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16898064 GTTGACTTAG
*
16898074 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16898100 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16898126 G
1 G
16898127 ATTGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16898287 original size:26 final size:26
Alignment explanation
Indices: 16898257--16898309 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16898247 GTTGGCTTAG
16898257 GCATACGAAGTTCATTC-CATGTCTAA
1 GCATACGAAGTTCATTCTCA-GTCTAA
*
16898283 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATTCTCAGTCTAA
16898309 G
1 G
16898310 ACTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCTCAGTCTAA
Found at i:16898450 original size:16 final size:17
Alignment explanation
Indices: 16898419--16898451 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
16898409 GAGAGCCTAA
16898419 CCAGCGACATTGGGGGTT
1 CCAGCGACA-TGGGGGTT
16898437 CCAGCGAC-TGGGGGT
1 CCAGCGACATGGGGGT
16898452 GCCTGGGGGT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
18 8 0.53
ACGTcount: A:0.15, C:0.24, G:0.42, T:0.18
Consensus pattern (17 bp):
CCAGCGACATGGGGGTT
Found at i:16899524 original size:26 final size:26
Alignment explanation
Indices: 16899488--16899540 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16899478 GTTGGCTTAG
*
16899488 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATAAGGAGTTCATTCCCA-GTCTAA
16899514 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
16899540 G
1 G
16899541 ACTGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:16899581 original size:12 final size:12
Alignment explanation
Indices: 16899564--16899593 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
16899554 GAGGGTTGTG
16899564 ACAGCAGGACCA
1 ACAGCAGGACCA
*
16899576 ACAGCAGGATCA
1 ACAGCAGGACCA
16899588 ACAGCA
1 ACAGCA
16899594 CGTAGGGGGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.43, C:0.30, G:0.23, T:0.03
Consensus pattern (12 bp):
ACAGCAGGACCA
Found at i:16900066 original size:159 final size:158
Alignment explanation
Indices: 16899709--16900091 Score: 398
Period size: 159 Copynumber: 2.4 Consensus size: 158
16899699 CCCAGTCTAA
* * * *
16899709 GCATACGGAGTTCATTCCTATTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATCAGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACGGCAGCAGGACCAGTA
* * * *
16899774 GCATGCAGAGGGAACCGGGCCGATCCCTGACTTACGCATTTTGCCTCTCCAGCCGGCTGACCGTC
66 GCATACAGAGGGAACCGGGCCGATCCCAGACTTACGCATTATGCCTCTCCAGCCGGCTAACCGTC
* *
16899839 CGCACACCCGTTTCATGGGTTGGCTTAG
131 CGAACACCCATTTCATGGGTTGGCTTAG
* ** ** * *
16899867 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-CTGGATCGAGGGTTATGGCAGCAGGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGATCGAGGGTTACGGCAGCAGGACCAG
* * * *
16899930 TAGCATATAGAGGGGGACCGGGCCGATCCTCAG-CTTGCGCATTATGCCTCTCC-GATCGGCTAA
64 TAGCATACAGA-GGGAACCGGGCCGATCC-CAGACTTACGCATTATGCCTCTCCAG-CCGGCTAA
* * *
16899993 GCG-CCTGAACGCTCATTTCATGGGTTGGCTTAG
126 CCGTCC-GAACACCCATTTCATGGGTTGGCTTAG
* ** * * * *
16900026 GCATACGGAGTTCATTCCCAGTGTAAGATTGGATCAGATCGAGGGTTGCAGCAGCAGGGCCAGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACGGCAGCAGGACCAGTA
16900091 G
66 G
16900092 TAGGATCGAC
Statistics
Matches: 179, Mismatches: 38, Indels: 15
0.77 0.16 0.06
Matches are distributed among these distances:
157 2 0.01
158 58 0.32
159 114 0.64
160 5 0.03
ACGTcount: A:0.22, C:0.26, G:0.30, T:0.22
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACGGCAGCAGGACCAGTA
GCATACAGAGGGAACCGGGCCGATCCCAGACTTACGCATTATGCCTCTCCAGCCGGCTAACCGTC
CGAACACCCATTTCATGGGTTGGCTTAG
Found at i:16900227 original size:26 final size:26
Alignment explanation
Indices: 16900197--16900248 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16900187 TTGACTTAGT
*
16900197 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACAGAGTTCATCCCCAGTCTAAG
*
16900223 CATACAGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATCCCCAGTCTAAG
16900249 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (26 bp):
CATACAGAGTTCATCCCCAGTCTAAG
Found at i:16900548 original size:26 final size:26
Alignment explanation
Indices: 16900518--16900570 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16900508 GTTGGCTTAG
*
16900518 GCATATGAAGTTCATT-CCATGTCTAA
1 GCATACGAAGTTCATTCCCA-GTCTAA
*
16900544 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
16900570 G
1 G
16900571 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16901220 original size:26 final size:26
Alignment explanation
Indices: 16901184--16901236 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16901174 GTTGACTTAG
*
16901184 GCATACAGAGTTTATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
16901210 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16901236 G
1 G
16901237 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16902697 original size:158 final size:158
Alignment explanation
Indices: 16902535--16902910 Score: 364
Period size: 158 Copynumber: 2.4 Consensus size: 158
16902525 CCTGCTGAAT
* * *
16902535 GCCCGCACACCCGTTTCGTGGGTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-
1 GCCCGCACACTCGTTTCGTGGGTT-GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGA
*** * * * * *
16902599 CCGGACCGAGGGTTGTGGCT-GTGGGATCGACAGCACATAGAGGAGGATCGGGCCAGTTCTCGGC
65 CCGGACCGAGGGTTGTGG-TAGCAAGATCGACAACACACAG-GGAGGATCGGGCCAGTCCCCGAC
* *
16902663 TTGCGTATTATGCCTCTC-CGCCGACTCAAC
128 TTGCGCATTATACCTCTCACGCCGACTCAAC
* ** * * * * * *
16902693 GCCCGAATGCTCGTTTTGTGGGTTGACTTAAGCATACGGTGTTCATTCCCTATCTAAG-ATCAGA
1 GCCCGCACACTCGTTTCGTGGGTTG-CTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGA
* * *
16902757 CTGGACCGAGGGTTGTGGTAGCAAGATCGACAACACACAGGGGGGATCGGGCCGGTCCCCGACTT
65 CCGGACCGAGGGTTGTGGTAGCAAGATCGACAACACACAGGGAGGATCGGGCCAGTCCCCGACTT
* * * ** * *
16902822 GTGCATTCTACCTCTCAGGCCGGTTGAGC
130 GCGCATTATACCTCTCACGCCGACTCAAC
* * *
16902851 ACCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCTTGTCTAAGCA
1 GCCCGCACACTCGTTTCGTGGGTT-GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
16902911 TATGGAGTTC
Statistics
Matches: 170, Mismatches: 42, Indels: 11
0.76 0.19 0.05
Matches are distributed among these distances:
157 37 0.22
158 131 0.77
159 2 0.01
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (158 bp):
GCCCGCACACTCGTTTCGTGGGTTGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCACCAGAC
CGGACCGAGGGTTGTGGTAGCAAGATCGACAACACACAGGGAGGATCGGGCCAGTCCCCGACTTG
CGCATTATACCTCTCACGCCGACTCAAC
Found at i:16902912 original size:26 final size:26
Alignment explanation
Indices: 16902882--16902934 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16902872 GTTGGCTTAG
16902882 GCATACGGAGTTCATTCCTT-GTCTAA
1 GCATACGGAGTTCATT-CTTAGTCTAA
*
16902908 GCATATGGAGTTCATTCTTAGTCTAA
1 GCATACGGAGTTCATTCTTAGTCTAA
16902934 G
1 G
16902935 ATTGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.36
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTTAGTCTAA
Found at i:16903121 original size:26 final size:26
Alignment explanation
Indices: 16903091--16903143 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16903081 GTTGACTTAG
16903091 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* ** *
16903117 GCATACGGAGTTTGTTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
16903143 G
1 G
16903144 ATCAGATCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:16903580 original size:11 final size:11
Alignment explanation
Indices: 16903564--16903595 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
16903554 ACAATCACCG
16903564 GAGCATCGCCA
1 GAGCATCGCCA
16903575 GAGCATCGCCA
1 GAGCATCGCCA
16903586 GAGCATCGCC
1 GAGCATCGCC
16903596 GGAGAGCCTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.25, C:0.38, G:0.28, T:0.09
Consensus pattern (11 bp):
GAGCATCGCCA
Found at i:16904230 original size:26 final size:26
Alignment explanation
Indices: 16904196--16904246 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
16904186 TGACTTAGGT
* *
16904196 ATACGGAGTTCATCCCCAGTCTAAGC
1 ATACAGAGTTCATCCCCAATCTAAGC
*
16904222 ATACAGAGTTCATTCCCAATCTAAG
1 ATACAGAGTTCATCCCCAATCTAAG
16904247 ATCGGATCGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.25
Consensus pattern (26 bp):
ATACAGAGTTCATCCCCAATCTAAGC
Found at i:16905974 original size:26 final size:26
Alignment explanation
Indices: 16905945--16905997 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16905935 GTTGACATAG
* *
16905945 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAATCTAA
*
16905971 GCATACAGAGTTCATTCCTAATCTAA
1 GCATACAGAGTTCATCCCTAATCTAA
16905997 G
1 G
16905998 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAATCTAA
Found at i:16906253 original size:158 final size:158
Alignment explanation
Indices: 16906091--16906465 Score: 395
Period size: 158 Copynumber: 2.4 Consensus size: 158
16906081 TTGGCTGACC
* * *
16906091 GCCTACACG-TCCATTTCATGGTTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAA
1 GCCTACACGCT-CGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAA
** * * *
16906155 CCAGACTGAA-GGTTGT-GCAGTGGGATCGATAGCACGCAGAGGGGGACCGGGCCGATCCCCGGC
65 CCAGACT-AAGGGTTGTGGCAGCAGGATCGACAGCACGCAG-GGGGGACCCGGCCGATCCCCAGC
* *
16906218 TTACGCATTCTGCCTC-TC-CCATCGACTCAGT
128 TTACACATTCTACCTCTTCGCC--CGACTCAGT
* * * *****
16906249 GCCTAAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-TAGTCTAAGAGTGGA
1 GCCTACACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCAT-GTCTAAGCCCCAA
* * * * *
16906313 CTAGACTAAGGGTTGTGGTAGCAGGATCGACAGCACGCAGGGGGGACCCGGTCGGTCCCTAGCTT
65 CCAGACTAAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGACCCGGCCGATCCCCAGCTT
*
16906378 ACACATTCTACCTCTTCGCCCGACTGAGT
130 ACACATTCTACCTCTTCGCCCGACTCAGT
** *
16906407 GCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACA-GAGTTCATTCCATGTCTAAGC
1 GCCTACACGCTCGTTTCGTGGGTTGGCTTAGGCATA-AGGAGTTCATTCCATGTCTAAGC
16906466 ATACACAGTT
Statistics
Matches: 178, Mismatches: 31, Indels: 16
0.79 0.14 0.07
Matches are distributed among these distances:
157 3 0.02
158 150 0.84
159 23 0.13
160 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.25
Consensus pattern (158 bp):
GCCTACACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCCCCAAC
CAGACTAAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGACCCGGCCGATCCCCAGCTTA
CACATTCTACCTCTTCGCCCGACTCAGT
Found at i:16906851 original size:26 final size:26
Alignment explanation
Indices: 16906822--16906876 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
16906812 GTCAAAGATC
16906822 GGACCGGACCGAGGGTTGCGGTAGCA
1 GGACCGGACCGAGGGTTGCGGTAGCA
16906848 GGACCGGACCGAGGGTTGCGGTAGCA
1 GGACCGGACCGAGGGTTGCGGTAGCA
16906874 GGA
1 GGA
16906877 TCGATAGCAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.20, C:0.22, G:0.47, T:0.11
Consensus pattern (26 bp):
GGACCGGACCGAGGGTTGCGGTAGCA
Found at i:16907882 original size:26 final size:26
Alignment explanation
Indices: 16907846--16907898 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16907836 GTTGACATAG
*
16907846 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
16907872 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
16907898 G
1 G
16907899 ATCAGATCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16908202 original size:158 final size:157
Alignment explanation
Indices: 16908037--16908373 Score: 340
Period size: 158 Copynumber: 2.1 Consensus size: 157
16908027 TAGCCATAGG
* * * * ** *
16908037 GAGTTCATTCCATGTCTAAGCTC-GAGTCGGACCAAGGGTTGTGGCAGCGGGACCGGTAGCACGC
1 GAGTTCATTCC-TGTCTAAGCTCGGA-CCCGACCAAGGGTTGCGACAGCAAGACCGATAGCACGC
*** * * *
16908101 AGAGGGGGATTGGGTTAATCCCCGGCTTAT-GCATTCTACC-CTCCGA-TCGGCTCAGTGCCCGA
64 AG-GGGGGACCCGGTCAATCCCCGGCTT-TCGCATTCTACCTCTCC-ACCCGGCTCAGCGCCCGA
16908163 ACGCTCATTTCATCGGTTGACTTAAGCATACA
126 ACGCTCATTTCATCGGTTGACTTAAGCATACA
* * ** *
16908195 GAGTTCATTCCTAGTCTAAGATTGGACCCGACTGAGGGTTGCGACAGCAAGATCGATAGCACGCA
1 GAGTTCATTCCT-GTCTAAGCTCGGACCCGACCAAGGGTTGCGACAGCAAGACCGATAGCACGCA
* * * * * *
16908260 GGGGGGACCCGGTCGATCCCTGGCTTTCGCATTCTACCTCTCCACCCGGCTGAGCGCCTGTACGT
65 GGGGGGACCCGGTCAATCCCCGGCTTTCGCATTCTACCTCTCCACCCGGCTCAGCGCCCGAACGC
* * *
16908325 TCATTTCATGGGTTGGCTTAGGCATACA
130 TCATTTCATCGGTTGACTTAAGCATACA
16908353 GAGTTCATTCCCTGTCTAAGC
1 GAGTTCATT-CCTGTCTAAGC
16908374 ATACGCAGTT
Statistics
Matches: 145, Mismatches: 28, Indels: 12
0.78 0.15 0.06
Matches are distributed among these distances:
156 1 0.01
157 31 0.21
158 108 0.74
159 5 0.03
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.25
Consensus pattern (157 bp):
GAGTTCATTCCTGTCTAAGCTCGGACCCGACCAAGGGTTGCGACAGCAAGACCGATAGCACGCAG
GGGGGACCCGGTCAATCCCCGGCTTTCGCATTCTACCTCTCCACCCGGCTCAGCGCCCGAACGCT
CATTTCATCGGTTGACTTAAGCATACA
Found at i:16908376 original size:26 final size:26
Alignment explanation
Indices: 16908346--16908397 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16908336 GTTGGCTTAG
*
16908346 GCATACAG-AGTTCATTCCCTGTCTAA
1 GCATAC-GCAGTTCATTCCCAGTCTAA
16908372 GCATACGCAGTTCATTCCCAGTCTAA
1 GCATACGCAGTTCATTCCCAGTCTAA
16908398 AAGTTTGAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.27, C:0.29, G:0.15, T:0.29
Consensus pattern (26 bp):
GCATACGCAGTTCATTCCCAGTCTAA
Found at i:16908704 original size:26 final size:26
Alignment explanation
Indices: 16908674--16908726 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16908664 GATGACTTAG
*
16908674 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTAATCCCCAGTCTAA
*
16908700 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATCCCCAGTCTAA
16908726 G
1 G
16908727 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTAATCCCCAGTCTAA
Found at i:16909081 original size:159 final size:156
Alignment explanation
Indices: 16908700--16909201 Score: 377
Period size: 158 Copynumber: 3.2 Consensus size: 156
16908690 CCCAGTCTAA
* * * *
16908700 GCATACGGAGTTAATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGCGGCAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAT-GGACCGAGGGTTGC-GTAGCAGGATCGACA
* * * * ** *
16908765 GCACGTAGGAGGGATCGAGCCGATCCCTGACTTGCACATTCTGCCTCTCTGGCCGACTGAGTGCC
64 GCACATAGGAGGGACCGAGCCGATCCCAGACTTGCACATTATGCCTCTCCAGCCGACTCAGTGCC
* * *
16908830 CGCACGCACATTTCGTGGGTTGGCTTAG
129 CGAACGCACATTTCATGGGTTGACTTAG
* ** * * * * *
16908858 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAGTTGGACCAAGGGTAGTCGTAAC-GGCACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGATGGACCGAGGGTTG-CGTAGCAGG-ATCGA
* * * * * *
16908921 CAGTACATAGAGTGGGACCGAGCCGATCCCCAG-CTTGCGCATTATGCCTTTCCAGCTGGCTCAG
62 CAGCACATAG-GAGGGACCGAGCCGAT-CCCAGACTTGCACATTATGCCTCTCCAGCCGACTCAG
* *
16908985 TGCCTGAACGCTCATTTCATGGGTTGACTTAG
125 TGCCCGAACGCACATTTCATGGGTTGACTTAG
* * *
16909017 GCCTACGGAGTTCATTCCCAGTCTTAGATCGGACTGGACCGAGGGTTGCAGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-TGGACCGAGGGTTGC-GTAGCAGGATCGACA
* * * * * * * * * * * * **
16909082 GCACACAGGGGGGACC-AGACCGGTCCCTGGCTTACGCATTCTACCTCTTC-GCCCGGCTGAGCA
64 GCACATAGGAGGGACCGAG-CCGATCCCAGACTTGCACATTATGCCTCTCCAG-CCGACTCAGTG
* * * * *
16909145 CCCGCACCCTCGTTTCATGGGTTGGCTTAG
127 CCCGAACGCACATTTCATGGGTTGACTTAG
16909175 GCATACGGAGTTCATT-CCATGTCTAAG
1 GCATACGGAGTTCATTCCCA-GTCTAAG
16909202 CATACGGAGT
Statistics
Matches: 268, Mismatches: 62, Indels: 28
0.75 0.17 0.08
Matches are distributed among these distances:
157 15 0.06
158 127 0.47
159 117 0.44
160 9 0.03
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATGGACCGAGGGTTGCGTAGCAGGATCGACAGC
ACATAGGAGGGACCGAGCCGATCCCAGACTTGCACATTATGCCTCTCCAGCCGACTCAGTGCCCG
AACGCACATTTCATGGGTTGACTTAG
Found at i:16909205 original size:26 final size:26
Alignment explanation
Indices: 16909175--16909227 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16909165 GTTGGCTTAG
16909175 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16909201 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16909227 G
1 G
16909228 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16909220 original size:501 final size:496
Alignment explanation
Indices: 16908644--16910226 Score: 1744
Period size: 501 Copynumber: 3.1 Consensus size: 496
16908634 CGACTGAGTG
* * * * *
16908644 CCCGCACGTTCGTTTCATGAGATGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCATACGG
1 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAAGCATACGG
*
16908708 AGTTAATTCCCAGTCTAAGATCAGATCGGA-TCGAGGGTTGCGGCAGCAGGATCGATAGCACGTA
65 AGTTAATTCCCAGTCTAAGATCGGATCGGACT-GAGGGTTGCGGCAGCAGGATCGATAGCACGTA
** *
16908772 GGAGGGATCGAGCCGATCCCTGACTTGCACATTCTGCCTCTCTGGCCGACTGAGTGCCCGCACGC
129 GG-GGGATCGAGCCGATCCCTGACTTGCACATTCTGCCTCTCTGGCCGACTGAGCACCCGCACAC
* *
16908837 ACATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTTGGACCAAGG
193 ACGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCAAGG
* * * * * * * * * * *
16908902 GTAGTCGTAACGGCACCGACAGTACATAGAGTGGGACCGAGCCGATCCCCAGCTTGCGCATTATG
258 GTTGTGGCAGCGG-ATCGACAGCACACAGAGGGGGACTGGGCCGATCCCCGGCTTGCGCATTATG
* ** * *
16908967 CCTTTCCAGCTGGCTCAGTGCCTGAACGCTCATTTCATGGGTTGACTTAGGCCTACGGAGTTCAT
322 CCTCTCC-GCTGGCTCAGCACCCGAACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCAT
* * * *
16909032 TCCCAGTCTTAGATCGGACTGGACCGAGGGTTGCAGTAGCAGGATCGACAGCACACAGGGGGGAC
386 TCCCAGTCTAAGATCAGACTGGACCGAGGGTTGC-GTAGCAGGATCGATAGCACGCAGGGGGGAC
**
16909097 CAGACCGGTCCCTGGCTTACGCATTCTACCTCTTCGCCCGGCTGAGCA
450 CAGGTCGGTCCCTGGCTTA-GCATTCTACCTCTTCGCCCGGCTGAGCA
*
16909145 CCCGCACCCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGA
1 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGA
* * * **
16909210 GTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTACGGCAGCAGGATCGATAGCACACAGG
66 GTTAATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTGCGGCAGCAGGATCGATAGCACGTA-G
* * * * *
16909275 GGGGATCGAGCCGATCCCTGGCTTG-AGCATTCTGCCTCTCCGCCCGACTGAGCACCCGCACTCC
130 GGGGATCGAGCCGATCCCTGACTTGCA-CATTCTGCCTCTCTGGCCGACTGAGCACCCGCACACA
* * * *
16909339 CGTTTCGTGGGTTGGCTTAGGCATAAGGATTTCATTCCATGTCTAAGCCCCAACTGGACCGAGGG
194 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCAAGGG
**
16909404 TTGTGGCAGCAGGATCGGTAGCACACAGAGGGGGACTGGGCCGATCCCCGGCTTGCGCATTATGC
259 TTGTGGCAGC-GGATCGACAGCACACAGAGGGGGACTGGGCCGATCCCCGGCTTGCGCATTATGC
** ** * *
16909469 CTCTCCGACCAGCTCAGCACCCGAACGCTCATTTTTTGAGTTGACTTAGGCATACAGAGTTCATT
323 CTCTCCG-CTGGCTCAGCACCCGAACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATT
** * * * *
16909534 CTTAGTCTAAGATCAGAGTGGACCGAGGGTTGCGGCAGCAGGATTGATAGCACGCATGTGGGGAC
387 CCCAGTCTAAGATCAGACTGGACCGAGGGTTGC-GTAGCAGGATCGATAGCACGCA-GGGGGGAC
* * ** *
16909599 CGGGTCGATCCCTGGCTTGAGCATTCTACCTCTTCGCCCAACTGAGCG
450 CAGGTCGGTCCCTGGCTT-AGCATTCTACCTCTTCGCCCGGCTGAGCA
* **
16909647 CCCGCACGCTCG-TTCTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAA
1 CCCGCACGCTCGTTTC-ATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGG
* * * * *
16909711 AGTTTATTCCGAGTCTAAGATTGGACCGGACTGAAGGTTGTGGTAGCAGGACCAATAGTAGGATC
65 AGTTAATTCCCAGTCTAAGATCGGATCGGACTG-AGG--GT--T-GC-GG--C---AGCAGGATC
* * * * * *
16909776 AACAGCATGTAGGGGGAATC-AGGTCGAT-CCTCGACTTGCACATTCTGCCTCTCTAGCC-AGTT
118 GATAGCACGTAGGGGG-ATCGA-GCCGATCCCT-GACTTGCACATTCTGCCTCTCTGGCCGA-CT
* * * * * *
16909838 GAGCACCCGTACACTCGTTTCATGGATTGGCTGAGGCATAGGGTGTTCATTCCATGTCTAAGCCC
179 GAGCACCCGCACACACGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC
* * * *
16909903 CAGCCGGACCAAGTGTTGTGGCAGCGGGATCGACAGCACACAGAGGGGGACTGGGTCGAACCCCG
244 CAGCTGGACCAAGGGTTGTGGCAGC-GGATCGACAGCACACAGAGGGGGACTGGGCCGATCCCCG
* *
16909968 GCTTGCGCATTATCCCTCTCCGATCGGCTCAGCACCCGAACGCTCATTTCATGGGTTGACTTAGG
308 GCTTGCGCATTATGCCTCTCCGCT-GGCTCAGCACCCGAACGCTCATTTCATGGGTTGACTTAGG
* * * * * *
16910033 CATACGAAGTTCATTCCCAGCCTAAGATCAGACTAGACTGAGGGTTACGATAACAGGATCGATAG
372 CATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCG-TAGCAGGATCGATAG
* * * * * * * * ** *
16910098 CATGCAGGGGAGACCAGGTCGGTCCCCGACTT-GTGAGTTTTGCCTCTCCAG-GTGGTTGAGCA
436 CACGCAGGGGGGACCAGGTCGGTCCCTGGCTTAG-CA-TTCTACCTCTTC-GCCCGGCTGAGCA
* * * *
16910160 CCCGCACACTCATTTCATGGGTTGGCTTAGACATACGGAGTTTATTCCATGTCTAAGCATACGGA
1 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGA
16910225 GT
66 GT
16910227 AGGATCAGCA
Statistics
Matches: 900, Mismatches: 150, Indels: 52
0.82 0.14 0.05
Matches are distributed among these distances:
500 5 0.01
501 373 0.41
502 135 0.15
503 4 0.00
505 2 0.00
507 1 0.00
508 1 0.00
509 2 0.00
511 2 0.00
512 1 0.00
513 101 0.11
514 272 0.30
515 1 0.00
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.24
Consensus pattern (496 bp):
CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGA
GTTAATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTGCGGCAGCAGGATCGATAGCACGTAGG
GGGATCGAGCCGATCCCTGACTTGCACATTCTGCCTCTCTGGCCGACTGAGCACCCGCACACACG
TTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTGGACCAAGGGTT
GTGGCAGCGGATCGACAGCACACAGAGGGGGACTGGGCCGATCCCCGGCTTGCGCATTATGCCTC
TCCGCTGGCTCAGCACCCGAACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA
GTCTAAGATCAGACTGGACCGAGGGTTGCGTAGCAGGATCGATAGCACGCAGGGGGGACCAGGTC
GGTCCCTGGCTTAGCATTCTACCTCTTCGCCCGGCTGAGCA
Found at i:16909329 original size:184 final size:184
Alignment explanation
Indices: 16909020--16909386 Score: 535
Period size: 184 Copynumber: 2.0 Consensus size: 184
16909010 GACTTAGGCC
* * * *
16909020 TACGGAGTTCATTCCCAGTCTTAGATCGGACTGGACCGAGGGTTGCAGTAGCAGGATCGACAGCA
1 TACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTACAGCAGCAGGATCGACAGCA
* * *
16909085 CACAGGGGGGACCAGACCGGTCCCTGGCTTACGCATTCTACCTCTTCGCCCGGCTGAGCACCCGC
66 CACAGGGGGGACCAGACCGATCCCTGGCTTACGCATTCTACCTCTCCGCCCGACTGAGCACCCGC
*
16909150 AC-CCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
131 ACTCC-CGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCA
* * *
16909204 TACGGAGTTCATTCCCAGTCTAAGATCGGA-TCAGACTGAGGGTTACGGCAGCAGGATCGATAGC
1 TACGGAGTTCATTCCCAGTCTAAGATCGGACT-AGACCGAGGGTTACAGCAGCAGGATCGACAGC
* *
16909268 ACACAGGGGGGATC-GAGCCGATCCCTGGCTTGA-GCATTCTGCCTCTCCGCCCGACTGAGCACC
65 ACACAGGGGGGACCAGA-CCGATCCCTGGCTT-ACGCATTCTACCTCTCCGCCCGACTGAGCACC
* *
16909331 CGCACTCCCGTTTCGTGGGTTGGCTTAGGCATAAGGATTTCATTCCATGTCTAAGC
128 CGCACTCCCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGC
16909387 CCCAACTGGA
Statistics
Matches: 164, Mismatches: 15, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
183 3 0.02
184 158 0.96
185 3 0.02
ACGTcount: A:0.20, C:0.29, G:0.28, T:0.23
Consensus pattern (184 bp):
TACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTACAGCAGCAGGATCGACAGCA
CACAGGGGGGACCAGACCGATCCCTGGCTTACGCATTCTACCTCTCCGCCCGACTGAGCACCCGC
ACTCCCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCA
Found at i:16909518 original size:159 final size:158
Alignment explanation
Indices: 16909241--16909705 Score: 526
Period size: 159 Copynumber: 2.9 Consensus size: 158
16909231 GGATCAGACT
* *
16909241 GAGGGTTACGGCAGCAGGATCGATAGCACACAGGGGGGA-TCGAGCCGATCCCTGGCTTGAGCAT
1 GAGGGTTGCGGCAGCAGGATCGATAGCACACAGGGGGGACT-GGGCCGATCCCTGGCTTGAGCAT
* * * * *
16909305 TCTGCCTCTCCGCCCGACTGAGCACCCGCACTCCCGTTTCGTGGGTTGGCTTAGGCATAAGGATT
65 TCTGCCTCTCCGCCAG-CTGAGCACCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATAAGGAGT
*
16909370 TCATTCCATGTCTAAGCCCCA-ACTGGACC
129 TCATTCCATGTCTAAGCACCAGACTGGACC
* * * *
16909399 GAGGGTTGTGGCAGCAGGATCGGTAGCACACAGAGGGGGACTGGGCCGATCCCCGGCTTGCGCAT
1 GAGGGTTGCGGCAGCAGGATCGATAGCACACAG-GGGGGACTGGGCCGATCCCTGGCTTGAGCAT
* * * * * * *
16909464 TATGCCTCTCCGACCAGCTCAGCACCCGAACGCTCATTTTTTGAGTTGACTTAGGCATACA-GAG
65 TCTGCCTCTCCG-CCAGCTGAGCACCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATA-AGGAG
* * *
16909528 TTCATT-CTTAGTCTAAG-ATCAGAGTGGACC
128 TTCATTCCAT-GTCTAAGCACCAGACTGGACC
* * * * *
16909558 GAGGGTTGCGGCAGCAGGATTGATAGCACGCATGTGGGGACCGGGTCGATCCCTGGCTTGAGCAT
1 GAGGGTTGCGGCAGCAGGATCGATAGCACACA-GGGGGGACTGGGCCGATCCCTGGCTTGAGCAT
* * * * * *
16909623 TCTACCTCTTCGCCCAACTGAGCGCCCGCACGCTCGTTCTGTGGGTTGGCTTAGGCATACGGAGT
65 TCTGCCTCTCCG-CCAGCTGAGCACCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATAAGGAGT
16909688 TCATTCCATGTCTAAGCA
129 TCATTCCATGTCTAAGCA
16909706 TACAAAGTTT
Statistics
Matches: 251, Mismatches: 46, Indels: 18
0.80 0.15 0.06
Matches are distributed among these distances:
158 34 0.14
159 208 0.83
160 9 0.04
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (158 bp):
GAGGGTTGCGGCAGCAGGATCGATAGCACACAGGGGGGACTGGGCCGATCCCTGGCTTGAGCATT
CTGCCTCTCCGCCAGCTGAGCACCCGCACGCTCGTTTTGTGGGTTGGCTTAGGCATAAGGAGTTC
ATTCCATGTCTAAGCACCAGACTGGACC
Found at i:16910775 original size:26 final size:26
Alignment explanation
Indices: 16910725--16910777 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16910715 GTTGACTTAG
*
16910725 GCATACGGAGTTCATCCCTATTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
16910751 GCATACGGAGTTCATTCCC-AGTCTAA
1 GCATACGGAGTTCA-TCCCTAGTCTAA
16910777 G
1 G
16910778 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:16911074 original size:26 final size:26
Alignment explanation
Indices: 16911045--16911097 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16911035 GTTGGCTTAG
16911045 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
16911071 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16911097 G
1 G
16911098 AGTTTGTGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16918061 original size:158 final size:157
Alignment explanation
Indices: 16917497--16918061 Score: 559
Period size: 158 Copynumber: 3.6 Consensus size: 157
16917487 ACCAACCGTT
* * * ** *
16917497 CGATCCCCGACTTACGCATCCTGCCTCTCTAG-TCGACTGAGCGCCCGCACGCTCATTTCGTGGG
1 CGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCT-GACTGAGCGCCCGCACACTCATTTCGTGGG
* *
16917561 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTAAGGGTTATGGCAGCA
65 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCA
* * * * *
16917626 GGATCGACAACACACAGGGGGGACCGAGC
130 AGATCGACAGCACGCA-GAGGGATCGAGC
* * * * * * *
16917655 CGATCCCCGGCTTGCGCATTCTGCCTCTTCGACCGACTGACCTCCCGCACAC-CTGTTTCATGGG
1 CGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGACTGAGCGCCCGCACACTC-ATTTCGTGGG
* * * ** *
16917719 TTGGCTTAGGCATAGGGAATTCATT-CCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGCAG
65 TTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCAGACTGAGGGTTGTGGCAG
* * * *
16917782 CGAGACCGACAGCATGCAGAGGGGGATCGAAC
128 CAAGATCGACAGCACGCAGA--GGGATCGAGC
* * * * *
16917814 CGATCCCTGGCTTGCGCATTATGCCTCTTCGGCCGCAC-G-GCGCCCGCACACTCATTTTGTGGG
1 CGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTG-ACTGAGCGCCCGCACACTCATTTCGTGGG
** * *
16917877 TTGACTTAGGCATACAAAGTTCATTCCCAGTCTAAGATCAGACC-GAACTGAGGGTTGCGGTAGC
65 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACTGAGGGTTGTGGCAGC
* * *
16917941 AAGATCGATAGCACGTTAGAGGGATCGGGC
129 AAGATCGACAGCACG-CAGAGGGATCGAGC
* * *
16917971 CGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
1 CGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGACTGAGCGCCCGCACACTCATTTCGTGGGT
* * *
16918036 TGGCTTAGGCATACGGGGTTTATTCC
66 TGACTTAGGCATACGGAGTTCATTCC
16918062 ATGTTTAAGC
Statistics
Matches: 325, Mismatches: 68, Indels: 28
0.77 0.16 0.07
Matches are distributed among these distances:
156 1 0.00
157 49 0.15
158 222 0.68
159 51 0.16
160 2 0.01
ACGTcount: A:0.20, C:0.30, G:0.28, T:0.22
Consensus pattern (157 bp):
CGATCCCCGGCTTGCGCATTCTGCCTCTCCGGCTGACTGAGCGCCCGCACACTCATTTCGTGGGT
TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAA
GATCGACAGCACGCAGAGGGATCGAGC
Found at i:16918096 original size:26 final size:26
Alignment explanation
Indices: 16918044--16918096 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
16918034 GTTGGCTTAG
* * *
16918044 GCATACGGGGTTTATTCCATGTTTAA
1 GCATACGGAGTTCATTCCATGTCTAA
16918070 GCATACGGAGTTCATTCC-TAGTCTAA
1 GCATACGGAGTTCATTCCAT-GTCTAA
16918096 G
1 G
16918097 ATCGAACTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.34
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:16918447 original size:26 final size:26
Alignment explanation
Indices: 16918411--16918463 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16918401 GTTGACTTAG
16918411 GCATACAGAGTACATCCCCAGTCTAA
1 GCATACAGAGTACATCCCCAGTCTAA
* * *
16918437 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTACATCCCCAGTCTAA
16918463 G
1 G
16918464 ATCGAATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTACATCCCCAGTCTAA
Found at i:16918448 original size:367 final size:341
Alignment explanation
Indices: 16918012--16918779 Score: 790
Period size: 355 Copynumber: 2.2 Consensus size: 341
16918002 GCTGGCTGAG
* * * * * *
16918012 CGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGGGTTTATTCCATGTTTAAGCATACG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCA-GTCTAAGCATACG
* * * *
16918077 GAGTTCATTCCTAGTCTAAGATCGAA-CTGGGCTGAGGGTTGCGATAGCAGGACCAGCAGCAGGA
65 GAGTTCATTCCCAGTCTAAGATCGAATC-AGACCGA-GG--GC--T-GC---ACCAGCA--A-GA
* * * *
16918141 TCGACAGCACGGAGGGGGGTTCGGG-TCGATCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGTT
117 TCGACAGCACGCAGGAGGGATCGGGCT-GATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGTT
* * * * * * *
16918205 AAGCGCCCACACACTCGTTTTGTGGTTTGGCTTAGGCA-AGCAGAGTTCATTGCATGTCTAAGCC
181 AAGAGCCCACACACCCATTTTATGGGTCGGCTTAGGCATAG-AGAGTTCATTCCATGTCTAAGCC
* * *
16918269 CTAGCCAGACCGAGGGTTGTGGCAGCAGGACCGGCAGTAGGATCGGCAGCACGCAGAGGGGGATC
245 CCAGCCAGACAGAGGGTTGT-G--GCAGG---GG--G-A--AT-GGCAGCACGCAGA-GGGGACC
* * * *
16918334 GGG-CTGATCCCTGACTTGCACATTATGCCTCTTCGATCGACTGAA
297 GGGTC-GATCCCTGACTCGCACATTATGCCTCCTCGACCGACTCAA
* * *
16918379 TGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTACATCCCCAGTCTAAGCATACG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCAT-CCCAGTCTAAGCATACG
* *
16918444 GAGTTCATTCCCAGTCTAAGATCGAATCAGACCGAGGGCTGCATCAGCAAGATCGGCAGCACGCA
65 GAGTTCATTCCCAGTCTAAGATCGAATCAGACCGAGGGCTGCACCAGCAAGATCGACAGCACGCA
* * * * *
16918509 GGAGGGATCGGGCTGATCCCCGACTTGCGTATTCTGCCTCTCCGGCCGGTTGAGAGCCCTCACGC
130 GGAGGGATCGGGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGTTAAGAGCCCACACAC
* *
16918574 CCATTTTATGGGTCGGCTTAGGCATAGGGAGTTCGTTCCATGTCTAAGCCCCAGCCAGACAGAGG
195 CCATTTTATGGGTCGGCTTAGGCATAGAGAGTTCATTCCATGTCTAAGCCCCAGCCAGACAGAGG
* * *
16918639 GTTGTGGCAGGGGGACTGGCAGCACGCAGAGGGGACCGGGTCGATCCCTGGCTCGCGCATTATGC
260 GTTGTGGCAGGGGGAATGGCAGCACGCAGAGGGGACCGGGTCGATCCCTGACTCGCACATTATGC
* *
16918704 CTCCTCGACCGGCTCAG
325 CTCCTCGACCGACTCAA
*
16918721 CGCCCGCACGCTCGTTTCGTGGGTTGACTTA-TCTATACAGAGTTCATTCCCAGTCTAAG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC-ATACAGAGTTCA-TCCCAGTCTAAG
16918780 ATCAAATCGG
Statistics
Matches: 345, Mismatches: 49, Indels: 39
0.80 0.11 0.09
Matches are distributed among these distances:
341 1 0.00
342 92 0.27
343 15 0.04
344 1 0.00
346 1 0.00
347 1 0.00
349 2 0.01
352 5 0.01
354 1 0.00
355 124 0.36
356 4 0.01
358 6 0.02
361 2 0.01
362 1 0.00
364 2 0.01
366 2 0.01
367 81 0.23
368 4 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (341 bp):
CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCAGTCTAAGCATACGG
AGTTCATTCCCAGTCTAAGATCGAATCAGACCGAGGGCTGCACCAGCAAGATCGACAGCACGCAG
GAGGGATCGGGCTGATCCCCGACTTGCGCATTCTGCCTCTCCGACCGGTTAAGAGCCCACACACC
CATTTTATGGGTCGGCTTAGGCATAGAGAGTTCATTCCATGTCTAAGCCCCAGCCAGACAGAGGG
TTGTGGCAGGGGGAATGGCAGCACGCAGAGGGGACCGGGTCGATCCCTGACTCGCACATTATGCC
TCCTCGACCGACTCAA
Found at i:16918923 original size:159 final size:157
Alignment explanation
Indices: 16918437--16918929 Score: 440
Period size: 158 Copynumber: 3.1 Consensus size: 157
16918427 CCCAGTCTAA
* * * ** *
16918437 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCAGACCGAGGGCTGCATCAGCAAGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAAATCAGACAGAGGGTTGCGGCAGCAGGATCGGCA
* * * * * *
16918502 GCACGCAGGAGGGATCGGG-CTGATCCCCGACTTGCGTATTCTGCCTCTCCGGCCGGTTGAGAGC
66 GCACGCAGGGGGGATCGGGTC-GATCCCCGGC-TGCGCATTCTGCCTCTCCGACCGGCTGAGCGC
* * * ** * *
16918566 CCTCACGCCCATTTTATGGGTCGGCTTAG
129 CCACACGCTCGTTTCGTGGGTTGGCTTTG
* * ** * ** * **
16918595 GCATAGGGAGTTCGTT-CCATGTCTAAGCCCCAGCCAGACAGAGGGTTGTGGCAGGGGGA-CTGG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCAAATCAGACAGAGGGTTGCGGCAGCAGGATC-GG
* * * * *
16918658 CAGCACGCAGAGGGGACCGGGTCGATCCCTGGCTCGCGCATTATGCCTC-CTCGACCGGCTCAGC
64 CAGCACGCAGGGGGGATCGGGTCGATCCCCGGCT-GCGCATTCTGCCTCTC-CGACCGGCTGAGC
* *
16918722 GCCCGCACGCTCGTTTCGTGGGTTGACTTAT-
127 GCCCACACGCTCGTTTCGTGGGTTGGCTT-TG
* * * * *
16918753 -CTATACAGAGTTCATTCCCAGTCTAAGATCAAATCGGACTGAGGGTTACGGCAGCAGGATCGAC
1 GC-ATACGGAGTTCATTCCCAGTCTAAGATCAAATCAGACAGAGGGTTGCGGCAGCAGGATCGGC
* * *
16918817 AGCACGTAGGGGGGGATCGGGTCGATCCCCGGCATGCGCATTCTGCCTCTCCGATCGACTGAGCG
65 AGCACGCA-GGGGGGATCGGGTCGATCCCCGGC-TGCGCATTCTGCCTCTCCGACCGGCTGAGCG
*
16918882 CCCACACGTTCGTTTCGTGGGTTGGCTTTG
128 CCCACACGCTCGTTTCGTGGGTTGGCTTTG
*
16918912 GCGTACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
16918930 ATGCCTAAGC
Statistics
Matches: 259, Mismatches: 62, Indels: 27
0.74 0.18 0.08
Matches are distributed among these distances:
157 7 0.03
158 160 0.62
159 89 0.34
160 3 0.01
ACGTcount: A:0.19, C:0.29, G:0.31, T:0.22
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAAATCAGACAGAGGGTTGCGGCAGCAGGATCGGCA
GCACGCAGGGGGGATCGGGTCGATCCCCGGCTGCGCATTCTGCCTCTCCGACCGGCTGAGCGCCC
ACACGCTCGTTTCGTGGGTTGGCTTTG
Found at i:16919298 original size:26 final size:26
Alignment explanation
Indices: 16919262--16919312 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
16919252 TGACATAGGT
* *
16919262 ATACTGAGTTCATCCCTAGTCTAAGC
1 ATACGGAGTTCATCCCTAATCTAAGC
*
16919288 ATACGGAGTTCATTCCTAATCTAAG
1 ATACGGAGTTCATCCCTAATCTAAG
16919313 ATCGAACTGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATCCCTAATCTAAGC
Found at i:16920320 original size:26 final size:26
Alignment explanation
Indices: 16920290--16920342 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16920280 GTTGACTTAG
*
16920290 GCATATAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
16920316 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16920342 G
1 G
16920343 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16920464 original size:26 final size:26
Alignment explanation
Indices: 16920428--16920480 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16920418 GTTGGCTTAG
16920428 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
16920454 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16920480 G
1 G
16920481 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16921217 original size:859 final size:859
Alignment explanation
Indices: 16919559--16921233 Score: 2661
Period size: 859 Copynumber: 1.9 Consensus size: 859
16919549 TACCTCTCCG
**
16919559 GTTGGCTGAGCATACGGAGTTCATACCATGTCTAAGCATACGGAGTTCATTCTTAGTCTAAGAGT
1 GTTGGCTGAGCATACGGAGTTCATACCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAGT
* ** ** * * *
16919624 TTGAGCCACGGTGCACATACTGAGCTTGGGCTTATGCTGGTGCCGTATTTTTTTCGCTCGGGGTA
66 TTGAGCCACGGTGCACATACTGAGCTTGGGCATATGCTAATGCCACATTTTTTTCGCCCGAGGCA
**
16919689 CCATCGTCGGAGCATCGTCGGAGAGCCTAACCGGTGGCATTGGGGGTTCCGGCGATTGGGGGAGT
131 CCATCGTCGGAGCATCACCGGAGAGCCTAACCGGTGGCATTGGGGGTTCCGGCGATTGGGGGAGT
* * *
16919754 CGGGGGGGTGTGCGCACATCATGTGCGATGGGTGCTGGCACTAGGCCCTTATATTGGCCCCCTAT
196 CGGGGGGATGTACGCACATCATGTGCGATGGGTGCTGGCACTAGGCCCTCATATTGGCCCCCTAT
* *
16919819 CCCTCATCAAACCACGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGC
261 CCCACATCAAACCACGAGAACTCACACCCACTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGC
* * *
16919884 CAGTAGCCATTAAAGTGTCTGAAATGGGGATACTTTTTTCAAACGATCACAAAATCTTCTCCAGT
326 CAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAACGATCACAAAATCTTCTCCACT
* * *
16919949 ACGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAATACAAGGATCGCCTTTACCAAATTT
391 ACGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAACAAGGATCACCTCTACCAAATTT
* *
16920014 GGGACAAAAATCTTTCTAAAAAAATTTTAAAAAATCCCGATCCGTAAAAAGTTTCAAAAATCGTG
456 GGGACAAAAATCTTTCTAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATG
* *
16920079 AAAAATAGAAAATGGGTCGTCTTGCCACGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGA
521 AAAAATAGAAAACGGGTCGTCTTGCCACGAAACTTCACATGAAGGATTAGGGGACCATTGTATGA
*
16920144 ATTTACAAGCCATAAAAATGGCAATGGCATGGCATAAATATGAAGATGTGCTTGAACCCACCTAC
586 ATTTACAAGCCATAAAAATGGCAATGGCATGGCAGAAATATGAAGATGTGCTTGAACCCACCTAC
* * * *
16920209 CACCCGTTTGATCCCCGACTTGCGGATCCTGCCTCTCTGGTCAGTTGAGCATCCGCATGCTCGTT
651 CACCCGTTCGATCCCCGACTTGCGCATCCTACCTCTCTGGTCAGTTGAGCATCCGCACGCTCGTT
*
16920274 TCATGGGTTGACTTAGGCATATAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTC
716 TCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTC
16920339 TAAGATCAGACCAGACCGAGGGTTGCAACAGCAGGACCAGCAGTAGGACCAGCTGAGCGCTCGCA
781 TAAGATCAGACCAGACCGAGGGTTGCAACAGCAGGACCAGCAGTAGGACCAGCTGAGCGCTCGCA
16920404 CGCTCATTTCGTGA
846 CGCTCATTTCGTGA
* * * *
16920418 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGAT
1 GTTGGCTGA-GCATACGGAGTTCATACCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAG
** * *
16920483 TTTGAGCCACGGTGCACATGTTGGGCTTGGGCATGTGCTAATGCCACATTTTTTTCGCCCGAGGC
65 TTTGAGCCACGGTGCACATACTGAGCTTGGGCATATGCTAATGCCACATTTTTTTCGCCCGAGGC
* * *
16920548 ACCATCGTCGGAGCATCACCGGAGAGCCTAACCGGTGGCATTGGGGGTTTCGGTGATTGGGGG-T
130 ACCATCGTCGGAGCATCACCGGAGAGCCTAACCGGTGGCATTGGGGGTTCCGGCGATTGGGGGAG
* * * * *
16920612 TCGGGGGGATGTACGCACATGATGTGTGATGGGTGTTGGTACTTGG-CCTCATATTGGCCCCCTA
195 TCGGGGGGATGTACGCACATCATGTGCGATGGGTGCTGGCACTAGGCCCTCATATTGGCCCCCTA
*
16920676 TCCCACATCAAACCTCGAGAACTCACACCCACTTAAAGAGCATTTGAGATTTTATAGGTTTGCTG
260 TCCCACATCAAACCACGAGAACTCACACCCACTTAAAGAGCATTTGAGATTTTATAGGTTTGCTG
* *
16920741 CCAGTAGCCATTAAAGTGTCTGAAATAGGGACATTTTTTTCAAACGGTCACAAAATCTTCTCCAC
325 CCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAACGATCACAAAATCTTCTCCAC
* * *
16920806 TTCGAGTTTTTGGCTGAATTTTTTTGTGCATGGCAACAAAAAAACAAGGATCACCTCTACCAAAT
390 TACGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC-AAAAAACAAGGATCACCTCTACCAAAT
* *
16920871 TTGGGTCAAAACTCTTTCTAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCA
454 TTGGGACAAAAATCTTTCTAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCA
*
16920936 TGAAAAATAGAAAACGGGTCGTCTTGCCATGAAACTTCACATGAAGGATTAGGGGACCATTGTAT
519 TGAAAAATAGAAAACGGGTCGTCTTGCCACGAAACTTCACATGAAGGATTAGGGGACCATTGTAT
* *
16921001 GAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCTTGAACCCATCT
584 GAATTTACAAGCCATAAAAATGGCAATGGCATGGCAGAAATATGAAGATGTGCTTGAACCCACCT
* * * *
16921066 ACCGCCCGTTCGATCCCCGGCTTGCGCATCCTACCTCTCTGGTCGGTTGAGCGTCCGCACGCTCG
649 ACCACCCGTTCGATCCCCGACTTGCGCATCCTACCTCTCTGGTCAGTTGAGCATCCGCACGCTCG
** * * * **
16921131 TTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCCTATGGAGTTCATTCCCAG
714 TTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAG
* *
16921196 TCTAAGATCGGATCAGACCGAGGGTTGCAACAGCAGGA
779 TCTAAGATCAGACCAGACCGAGGGTTGCAACAGCAGGA
16921234 TCGACAGCAT
Statistics
Matches: 741, Mismatches: 73, Indels: 4
0.91 0.09 0.00
Matches are distributed among these distances:
858 173 0.23
859 406 0.55
860 162 0.22
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.27
Consensus pattern (859 bp):
GTTGGCTGAGCATACGGAGTTCATACCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAGT
TTGAGCCACGGTGCACATACTGAGCTTGGGCATATGCTAATGCCACATTTTTTTCGCCCGAGGCA
CCATCGTCGGAGCATCACCGGAGAGCCTAACCGGTGGCATTGGGGGTTCCGGCGATTGGGGGAGT
CGGGGGGATGTACGCACATCATGTGCGATGGGTGCTGGCACTAGGCCCTCATATTGGCCCCCTAT
CCCACATCAAACCACGAGAACTCACACCCACTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGC
CAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAACGATCACAAAATCTTCTCCACT
ACGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAACAAGGATCACCTCTACCAAATTT
GGGACAAAAATCTTTCTAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATG
AAAAATAGAAAACGGGTCGTCTTGCCACGAAACTTCACATGAAGGATTAGGGGACCATTGTATGA
ATTTACAAGCCATAAAAATGGCAATGGCATGGCAGAAATATGAAGATGTGCTTGAACCCACCTAC
CACCCGTTCGATCCCCGACTTGCGCATCCTACCTCTCTGGTCAGTTGAGCATCCGCACGCTCGTT
TCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTC
TAAGATCAGACCAGACCGAGGGTTGCAACAGCAGGACCAGCAGTAGGACCAGCTGAGCGCTCGCA
CGCTCATTTCGTGA
Found at i:16921518 original size:26 final size:26
Alignment explanation
Indices: 16921482--16921534 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16921472 GTTGACTTAG
* *
16921482 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
16921508 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
16921534 G
1 G
16921535 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:16921860 original size:26 final size:26
Alignment explanation
Indices: 16921824--16921876 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16921814 GTTAGCTTAG
16921824 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
16921850 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
16921876 G
1 G
16921877 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:16922956 original size:26 final size:26
Alignment explanation
Indices: 16922926--16922978 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16922916 GCTGACTTAG
*
16922926 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
16922952 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
16922978 G
1 G
16922979 ATTAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:16923229 original size:47 final size:46
Alignment explanation
Indices: 16923148--16923239 Score: 139
Period size: 47 Copynumber: 2.0 Consensus size: 46
16923138 CCCAGCTAAA
* *
16923148 TCGAGGGTTGTGGCAGGGGACCGGCAACACGTAGAGGGGGATCGGG
1 TCGAGGGTTGTGGCACGGGACCGACAACACGTAGAGGGGGATCGGG
* *
16923194 TCGAGGGTTGTGGCAACGGGACCGATAGCACGTAGAGGGGGATCGG
1 TCGAGGGTTGTGGC-ACGGGACCGACAACACGTAGAGGGGGATCGG
16923240 TCCAATCCCC
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
46 14 0.34
47 27 0.66
ACGTcount: A:0.21, C:0.17, G:0.48, T:0.14
Consensus pattern (46 bp):
TCGAGGGTTGTGGCACGGGACCGACAACACGTAGAGGGGGATCGGG
Found at i:16924737 original size:26 final size:26
Alignment explanation
Indices: 16924707--16924759 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16924697 GCTGACTTAG
*
16924707 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
16924733 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
16924759 G
1 G
16924760 ATTAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:16925012 original size:47 final size:46
Alignment explanation
Indices: 16924931--16925022 Score: 139
Period size: 47 Copynumber: 2.0 Consensus size: 46
16924921 CCCAGCTAAA
* *
16924931 TCGAGGGTTGTGGCAGGGGACCGGCAACACGTAGAGGGGGATCGGG
1 TCGAGGGTTGTGGCACGGGACCGACAACACGTAGAGGGGGATCGGG
* *
16924977 TCGAGGGTTGTGGCAACGGGACCGATAGCACGTAGAGGGGGATCGG
1 TCGAGGGTTGTGGC-ACGGGACCGACAACACGTAGAGGGGGATCGG
16925023 TCCAATCCCC
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
46 14 0.34
47 27 0.66
ACGTcount: A:0.21, C:0.17, G:0.48, T:0.14
Consensus pattern (46 bp):
TCGAGGGTTGTGGCACGGGACCGACAACACGTAGAGGGGGATCGGG
Found at i:16926161 original size:26 final size:26
Alignment explanation
Indices: 16926106--16926163 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
16926096 CATGGGTTGA
* *
16926106 CTAAGGCATACGGAGTTCATCCCCAGT
1 CTAA-GCATACAGAGTTCATCCCCAAT
**
16926133 CTAAGCATACAGAGTTCATTTCCAAT
1 CTAAGCATACAGAGTTCATCCCCAAT
16926159 CTAAG
1 CTAAG
16926164 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
26 23 0.85
27 4 0.15
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
CTAAGCATACAGAGTTCATCCCCAAT
Found at i:16926502 original size:26 final size:26
Alignment explanation
Indices: 16926453--16926505 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16926443 GTTGGCTTAG
*
16926453 GCATACGGAGTTCATTTCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
16926479 GCATACGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
16926505 G
1 G
16926506 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:16927221 original size:26 final size:26
Alignment explanation
Indices: 16927185--16927263 Score: 106
Period size: 26 Copynumber: 3.0 Consensus size: 26
16927175 GTTGACTTAG
16927185 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGTCTAA
* * *
16927211 GCATACAGAGTTCAATCCATGTCTAG
1 GCATACGGAGTTCATTCCATGTCTAA
*
16927237 GCATATGGAGTTCATTCCCA-GTCTAA
1 GCATACGGAGTTCATT-CCATGTCTAA
16927263 G
1 G
16927264 AGTTTGAGCC
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
26 42 0.93
27 3 0.07
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:16928088 original size:158 final size:157
Alignment explanation
Indices: 16927564--16928881 Score: 585
Period size: 158 Copynumber: 8.2 Consensus size: 157
16927554 CCGTTTCCTA
* * * * * *
16927564 GGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTGAGGGTTGTGCCAG
1 GGTTGACTTAGGCATACGGAGTTCATTCCA-GTCTAAG-ACCAGCCAGACTGAGGGTTGCGGCAA
* * * * *
16927629 CATGA-CTGGCAGCACGCAGAGGGGGACCGGGTCGATCCCCGGCTT-GCGCATTATGCCTCTCCG
64 CAGGATC-GACAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTAG-GCATTCTGCCTCTCCG
* * *
16927692 ATCGACTCAGCACCCGAACGCTCATTTCATG
127 ATCGACTGAGCACCCGCACACTCATTTCATG
* ** * * * *
16927723 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTAAGGGTTACGACAG
1 GGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAGACCAG-CCAGACTGAGGGTTGCGGCAA
* * ** * * * *
16927788 CAGGATCAATAGCACGCAG-GGGGGACCACGCCGATCCCCGAGTTACGCA-TCTTGCCTCTCTGG
64 CAGGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTAGGCATTC-TGCCTCTCCGA
* * *
16927851 TCGGCTGAGCATCCGCACACTCGTTTCATG
128 TCGACTGAGCACCCGCACACTCATTTCATG
* * * * * * *
16927881 AGTTGACTTAGGTATACGGAGTTCATCCCCAGTCAAAGATCGGACCAGACTGAGGGTTGCGGTAA
1 GGTTGACTTAGGCATACGGAGTTCAT-TCCAGTCTAAGACCAG-CCAGACTGAGGGTTGCGGCAA
* * *
16927946 TAGGATCGACAGCACGCAG-GGGGGACCGGGCCGATCCCCTACTTAGGCATTCTGCCACTCCGAT
64 CAGGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTAGGCATTCTGCCTCTCCGAT
* * * *
16928010 CAACTGAGCGCCCGCACTCCCATTTCATG
129 CGACTGAGCACCCGCACACTCATTTCATG
* * * *
16928039 GGTT-AGCTTAGGCATA-GGAAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTTGTGGC
1 GGTTGA-CTTAGGCATACGG-AGTTCATTCCA-GTCTAAG-ACCAGCCAGACTGAGGGTTGCGGC
* * * ** * * * * *
16928102 AATAGGACCGGCAGCATACAGAGGGGGACCGGGTCAATCCCTGACTT-GTGCATTATGCCTCTCT
62 AACAGGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTAG-GCATTCTGCCTCTCC
** * * *** ** ** *
16928166 GGCCGGCTCAGCACCTATATGCTTGTTTCGTG
126 GATCGACTGAGCACCCGCACACTCATTTCATG
* * * * * * ** ** *
16928198 GGTTGACTTAGGCGTACGGGGTTCATTCCCAGTGTAAGATCAGATCGGACCAAGGGTTGCGATAG
1 GGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAGACCAG-CCAGACTGAGGGTTGCGGCAA
* * * * * *
16928263 TAGGATCGATAGCACGCAG-GGGGGACCGGACTGGTCCCCGACTT-GCACATTCTGCCTCTCCG-
64 CAGGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTAG-GCATTCTGCCTCTCCGA
* * ** * *
16928325 GCCAGCTGAGTGCCCGCACGCTCATTTCGTG
128 TCGA-CTGAGCACCCGCACACTCATTTCATG
* * * **
16928356 GGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAG-CCGTAGTC-GAACCAAGGGTTGTGGC
1 GGTTGACTTAGGCATACGGAGTTCATTCCA-GTCTAAGACC--AGCCAG-ACTGAGGG-T-T-GC
* * * * * * ** * * *
16928419 AGCAAGACCGGCGGCGGGGTCGACAACACGCAGAGAGGGACTGGGCTAATCCTCGGCTTACGCAT
59 GGC-A-A-------CAGGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTAGGCAT
* * * * * * * *
16928484 TATGCCTCTTCGA-CTGGCTGAGCGCTCGCACGCTCGTTTCGTG
115 TCTGCCTCTCCGATC-GACTGAGCACCCGCACACTCATTTCATG
** * * * ** *
16928527 TATTGACTTAGGCATACGGAGTTCATTCTAAGTCTAAGATCAAACTGGACTGAGGGTTGCGGCAG
1 GGTTGACTTAGGCATACGGAGTTCATTC-CAGTCTAAGA-CCAGCCAGACTGAGGGTTGCGGCAA
* * * * * * *
16928592 CAGGATC-AGCAGCACACAG-GGTGGACCGGGTCGATCCCC-AGCTT-GCGTATTCTACCTATCT
64 CAGGATCGA-CAGCACGCAGAGGGGGACCGGGCCGATCCCCGA-CTTAG-GCATTCTGCCTCTCC
* * *
16928653 GATCGACTGAGC-CCC-CATACGTTAGTTTCGTG
126 GATCGACTGAGCACCCGCACAC-TCA-TTTCATG
* * * * * * **
16928685 GGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTCGGACTGAGGGTTGTGATAA
1 GGTTGACTTAGGCATACGGAGTTCATTCCA-GTCTAAG-ACCAGCCAGACTGAGGGTTGCGGCAA
** * * * * * * * * *
16928750 TGGGACCCACAGCACGTAGAGGGGGATCAGGCCAATCCTC-AGCTT-GCTCATTCTACCTCTCCG
64 CAGGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGA-CTTAG-GCATTCTGCCTCTCCG
* * * * *
16928813 ATTGGCTGAGCGCCCGCACGA-TCGTTTCGTG
127 ATCGACTGAGCACCCGCAC-ACTCATTTCATG
*
16928844 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 GGTTGACTTAGGCATACGGAGTTCATTCCA-GTCTAAG
16928882 CATATGGGGT
Statistics
Matches: 866, Mismatches: 238, Indels: 110
0.71 0.20 0.09
Matches are distributed among these distances:
156 3 0.00
157 17 0.02
158 435 0.50
159 273 0.32
160 15 0.02
161 4 0.00
162 2 0.00
167 1 0.00
168 4 0.00
169 1 0.00
170 15 0.02
171 93 0.11
172 2 0.00
173 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (157 bp):
GGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGACCAGCCAGACTGAGGGTTGCGGCAACA
GGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTAGGCATTCTGCCTCTCCGATCG
ACTGAGCACCCGCACACTCATTTCATG
Found at i:16929616 original size:26 final size:26
Alignment explanation
Indices: 16929576--16929628 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16929566 GTTGACTTAG
* *
16929576 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGCTCATCCCCAATCTAA
*
16929602 GCATACAGAGCTCATTCCCAATCTAA
1 GCATACAGAGCTCATCCCCAATCTAA
16929628 G
1 G
16929629 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.30, G:0.15, T:0.23
Consensus pattern (26 bp):
GCATACAGAGCTCATCCCCAATCTAA
Found at i:16930632 original size:133 final size:133
Alignment explanation
Indices: 16930404--16930647 Score: 362
Period size: 133 Copynumber: 1.8 Consensus size: 133
16930394 CACATGCCAA
* *
16930404 TTTCGTAGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCAAGGGTT
1 TTTCGTAGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTT
* * * *
16930469 ATGGTAACGAGACCAGCAGCACGTAAAGGGGGACCGGGTTGATCCCCAATTGAGCACCCGTAGGC
66 ATGGTAACGAGACCAGCAACACGCAAAGGGGGACAGGGCTGATCCCCAATTGAGCACCCGTAGGC
16930534 CCG
131 CCG
* * * *
16930537 TTTCGTGGGTTGGCTTAGGTATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTT
1 TTTCGTAGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTT
* * * *
16930602 GTGGTAGCGAGACCGGCAACACGCAGAGGGGGACAGGGCTGATCCC
66 ATGGTAACGAGACCAGCAACACGCAAAGGGGGACAGGGCTGATCCC
16930648 TGGCTTGCGC
Statistics
Matches: 97, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
133 97 1.00
ACGTcount: A:0.22, C:0.24, G:0.33, T:0.21
Consensus pattern (133 bp):
TTTCGTAGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTT
ATGGTAACGAGACCAGCAACACGCAAAGGGGGACAGGGCTGATCCCCAATTGAGCACCCGTAGGC
CCG
Found at i:16931453 original size:26 final size:26
Alignment explanation
Indices: 16931413--16931465 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16931403 GTTGACTTAG
* *
16931413 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGCTCATCCCCAATCTAA
*
16931439 GCATACAGAGCTCATTCCCAATCTAA
1 GCATACAGAGCTCATCCCCAATCTAA
16931465 G
1 G
16931466 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.30, G:0.15, T:0.23
Consensus pattern (26 bp):
GCATACAGAGCTCATCCCCAATCTAA
Done.