Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167938.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_20, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19866354
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 74000 characters in sequence are not A, C, G, or T
File 83 of 100
Found at i:16932461 original size:133 final size:133
Alignment explanation
Indices: 16932242--16932485 Score: 371
Period size: 133 Copynumber: 1.8 Consensus size: 133
16932232 CACATGCCAA
* *
16932242 TTTCGTAGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCAAGGGTT
1 TTTCGTAGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTT
* * *
16932307 ATGGTAACGAGACCAGCAGCACGTAAAGGGGGACCGGGTTGATCCCCAATTGAGCACCCGTAGGC
66 ATGGTAACGAGACCAGCAGCACGCAAAGGGGGACAGGGCTGATCCCCAATTGAGCACCCGTAGGC
16932372 CCG
131 CCG
* * * *
16932375 TTTCGTGGGTTGGCTTAGGTATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTT
1 TTTCGTAGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTT
* * * *
16932440 GTGGTAGCGAGACCGGCAGCACGCAGAGGGGGACAGGGCTGATCCC
66 ATGGTAACGAGACCAGCAGCACGCAAAGGGGGACAGGGCTGATCCC
16932486 TGGCTTGCGC
Statistics
Matches: 98, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
133 98 1.00
ACGTcount: A:0.22, C:0.24, G:0.33, T:0.21
Consensus pattern (133 bp):
TTTCGTAGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTT
ATGGTAACGAGACCAGCAGCACGCAAAGGGGGACAGGGCTGATCCCCAATTGAGCACCCGTAGGC
CCG
Found at i:16933291 original size:26 final size:26
Alignment explanation
Indices: 16933251--16933303 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16933241 GTTGACTTAG
* *
16933251 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGCTCATCCCCAATCTAA
*
16933277 GCATACAGAGCTCATTCCCAATCTAA
1 GCATACAGAGCTCATCCCCAATCTAA
16933303 G
1 G
16933304 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.30, G:0.15, T:0.23
Consensus pattern (26 bp):
GCATACAGAGCTCATCCCCAATCTAA
Found at i:16934298 original size:133 final size:133
Alignment explanation
Indices: 16934079--16934322 Score: 371
Period size: 133 Copynumber: 1.8 Consensus size: 133
16934069 CACATGCCAA
* *
16934079 TTTCGTAGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCAAGGGTT
1 TTTCGTAGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTT
* * *
16934144 ATGGTAACGAGACCAGCAGCACGTAAAGGGGGACCGGGTTGATCCCCAATTGAGCACCCGTAGGC
66 ATGGTAACGAGACCAGCAGCACGCAAAGGGGGACAGGGCTGATCCCCAATTGAGCACCCGTAGGC
16934209 CCG
131 CCG
* * * *
16934212 TTTCGTGGGTTGGCTTAGGTATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAGGGTT
1 TTTCGTAGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTT
* * * *
16934277 GTGGTAGCGAGACCGGCAGCACGCAGAGGGGGACAGGGCTGATCCC
66 ATGGTAACGAGACCAGCAGCACGCAAAGGGGGACAGGGCTGATCCC
16934323 TGGCTTGCGC
Statistics
Matches: 98, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
133 98 1.00
ACGTcount: A:0.22, C:0.24, G:0.33, T:0.21
Consensus pattern (133 bp):
TTTCGTAGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAGGGTT
ATGGTAACGAGACCAGCAGCACGCAAAGGGGGACAGGGCTGATCCCCAATTGAGCACCCGTAGGC
CCG
Found at i:16935118 original size:26 final size:26
Alignment explanation
Indices: 16935088--16935140 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16935078 GTTGACTTAG
*
16935088 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
16935114 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
16935140 G
1 G
16935141 ATTGGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:16937126 original size:26 final size:26
Alignment explanation
Indices: 16937097--16937149 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16937087 GTTGACTTAG
16937097 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* **
16937123 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
16937149 G
1 G
16937150 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:16937625 original size:26 final size:26
Alignment explanation
Indices: 16937547--16937616 Score: 131
Period size: 26 Copynumber: 2.7 Consensus size: 26
16937537 GTTGGCTTAG
16937547 GCATACGGAGTTCATTCCATGTGTAA
1 GCATACGGAGTTCATTCCATGTGTAA
*
16937573 GCATATGGAGTTCATTCCATGTGTAA
1 GCATACGGAGTTCATTCCATGTGTAA
16937599 GCATACGGAGTTCATTCC
1 GCATACGGAGTTCATTCC
16937617 TAGTCTAAGA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTGTAA
Found at i:16938333 original size:26 final size:26
Alignment explanation
Indices: 16938294--16938344 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
16938284 GTTGACTTAG
*
16938294 GCATACGGAATTCATCCCTAGTCTAT
1 GCATACAGAATTCATCCCTAGTCTAT
* *
16938320 GCATACAGAGTTCATTCCTAGTCTA
1 GCATACAGAATTCATCCCTAGTCTA
16938345 GGATCAAACC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.31
Consensus pattern (26 bp):
GCATACAGAATTCATCCCTAGTCTAT
Found at i:16938683 original size:159 final size:158
Alignment explanation
Indices: 16938520--16938809 Score: 334
Period size: 158 Copynumber: 1.8 Consensus size: 158
16938510 CCAGAGTTAG
* * * * * *
16938520 GGTTGTGGCAGCAGGACCGGCAGCATGCAGA-GGGGGA-TCGGGCCGGTCCTC-GACTTGCATAT
1 GGTTGTGACAGCAGGACCGACAGCA--CAGAGGGGGGACT-GAGCCGGTCCCCTG-CTTACACAT
* *
16938582 TATGCCTCTCTGACCAACTCAACGCCCGAACGCTCATTTCGTGGGTTGGCTTAGGCATACGAAGT
62 TATGCCTCTCCGACCAACTCAACGCCCGAACACTCATTTCGTGGGTTGGCTTAGGCATACGAAGT
16938647 TCATTCCCAGTCTAAGATCGGACCAAACCAAT
127 TCATTCCCAGTCTAAGATCGGACCAAACCAAT
* * * * *
16938679 GGTTGTGATAGCAGGATCGACAGCACATAGGGGGGACTGAGCCGGTCCCCTGCTTACGCATTCTG
1 GGTTGTGACAGCAGGACCGACAGCACAGAGGGGGGACTGAGCCGGTCCCCTGCTTACACATTATG
* * * * * * * *
16938744 CCTCTCCGATCGACTGAGCGGCCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
66 CCTCTCCGACCAACTCAACGCCCGAACACTCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCAT
16938809 T
131 T
16938810 ACATGTCTAA
Statistics
Matches: 107, Mismatches: 21, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
157 3 0.03
158 81 0.76
159 23 0.21
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (158 bp):
GGTTGTGACAGCAGGACCGACAGCACAGAGGGGGGACTGAGCCGGTCCCCTGCTTACACATTATG
CCTCTCCGACCAACTCAACGCCCGAACACTCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCAT
TCCCAGTCTAAGATCGGACCAAACCAAT
Found at i:16939489 original size:26 final size:26
Alignment explanation
Indices: 16939460--16939512 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16939450 GTTGACTCAG
* *
16939460 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTAATCCCCAATCTAA
*
16939486 GCATATGGAGTTAATCCCCAATCTAA
1 GCATACGGAGTTAATCCCCAATCTAA
16939512 G
1 G
16939513 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTAATCCCCAATCTAA
Found at i:16939998 original size:26 final size:26
Alignment explanation
Indices: 16939961--16940013 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16939951 GTTGGCTTAG
* *
16939961 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGAAGTTCATTCCACGTCTAA
*
16939987 GCATACGAAGTTCATTCCCCGTCTAA
1 GCATACGAAGTTCATTCCACGTCTAA
16940013 G
1 G
16940014 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCACGTCTAA
Found at i:16940187 original size:26 final size:26
Alignment explanation
Indices: 16940157--16940209 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16940147 GTTGACTTAG
16940157 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
16940183 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
16940209 G
1 G
16940210 ATTAGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:16941491 original size:26 final size:26
Alignment explanation
Indices: 16941462--16941514 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
16941452 CTGGTTCGAT
16941462 CTTAGAC-TGGGAATGAACTTC-GTATG
1 CTTAGACAT-GGAATGAAC-TCAGTATG
16941488 CTTAGACATGGAATGAACTCAGTATG
1 CTTAGACATGGAATGAACTCAGTATG
16941514 C
1 C
16941515 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 2 0.08
26 22 0.88
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCAGTATG
Found at i:16941990 original size:26 final size:26
Alignment explanation
Indices: 16941939--16941991 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16941929 CCGGTCTGAT
**
16941939 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCAATATG
*
16941965 CTTAGATTGGGGATGAACTCAATATG
1 CTTAGACTGGGGATGAACTCAATATG
16941991 C
1 C
16941992 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCAATATG
Found at i:16942166 original size:26 final size:26
Alignment explanation
Indices: 16942137--16942188 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16942127 CGGTCTGATT
*
16942137 TTAGAC-TGGGAATGAACTCCGTATGC
1 TTAGACAT-GGAAGGAACTCCGTATGC
16942163 TTAGACATGGAAGGAACTCCGTATGC
1 TTAGACATGGAAGGAACTCCGTATGC
16942189 CTCAACCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (26 bp):
TTAGACATGGAAGGAACTCCGTATGC
Found at i:16942285 original size:197 final size:197
Alignment explanation
Indices: 16941919--16942290 Score: 423
Period size: 197 Copynumber: 1.9 Consensus size: 197
16941909 CTGCTGTCGC
* * * *
16941919 AACCCTCTGTCCGGTCTGATCTTAGACTGGGGATGAACTCCGTATGCTTAGATTGGGGATGAACT
1 AACCCTCTGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAATGGGAAGGAACT
* * ** * *
16941984 CAATATGCCTAAGTCAACTCGTGAAGCGAGCGTGCGGGTGCTCAACCAGCCGGAGAGGCTGAATG
66 CAATATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGTGCTCAACCAGCCGAAGAGGCTGAATG
* * *** * **
16942049 TGTAAGCCGAGGATTGGTTCGGTCCCCTCCTGCGTGCTGTCGATCCTACTACTGGTCCTGCTAAC
131 CGTAAGCCGAGGATCGACCCGATCCCCTCCAACGTGCTGTCGATCCTACTACTGGTCCTGCTAAC
16942114 GT
196 GT
*
16942116 AACCCTC-GATCCGGTCTGATTTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAAGGAA
1 AACCCTCTG-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA-ATGGGAAGGAA
** * *
16942179 CTCCGTATGCCTCAA-CCAACCCAAGAAACGAGTGTGCGGGTGCTCAGCC-GACCGAAGAGG-TA
64 CTCAATATGCCT-AAGCCAACCCAAGAAACGAGCGTGCGGGTGCTCAACCAG-CCGAAGAGGCT-
* *
16942241 GAATGCGTAAGCCGGGGATCGACCCGATCCCC-CACAATGTGCTGTCGATC
126 GAATGCGTAAGCCGAGGATCGACCCGATCCCCTC-CAACGTGCTGTCGATC
16942291 TTGTTATCGT
Statistics
Matches: 144, Mismatches: 25, Indels: 12
0.80 0.14 0.07
Matches are distributed among these distances:
196 4 0.03
197 137 0.95
198 3 0.02
ACGTcount: A:0.23, C:0.26, G:0.28, T:0.23
Consensus pattern (197 bp):
AACCCTCTGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAATGGGAAGGAACT
CAATATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGTGCTCAACCAGCCGAAGAGGCTGAATG
CGTAAGCCGAGGATCGACCCGATCCCCTCCAACGTGCTGTCGATCCTACTACTGGTCCTGCTAAC
GT
Found at i:16942635 original size:26 final size:26
Alignment explanation
Indices: 16942596--16942646 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
16942586 AGTCTGATCT
16942596 TAGACTAGGAATGAACTCCGTATGCA
1 TAGACTAGGAATGAACTCCGTATGCA
* *
16942622 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTAGGAATGAACTCCGTATGC
16942647 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCGTATGCA
Found at i:16942807 original size:26 final size:26
Alignment explanation
Indices: 16942778--16942830 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16942768 CTGGTCCGAT
16942778 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
16942804 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
16942830 C
1 C
16942831 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:16942860 original size:184 final size:183
Alignment explanation
Indices: 16942544--16942982 Score: 596
Period size: 184 Copynumber: 2.4 Consensus size: 183
16942534 GGGCGCTCAG
* * *
16942544 CCCCCTGCATGCTATCGATCCTGA-TGCCGCAACCCTCAGTCCAGTCTGATCTTAGACTAGGAAT
1 CCCCCTGCATGCTATCGATCCT-ACTACCGCAACCCTCAGT-CGGTCTGATCTTAGACTGGGAAT
*
16942608 GAACTCCGTATGCATAGACTGGGGATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTA
64 GAACTCCGTATGCATAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTA
* * * * * **
16942673 CGGGCGCTCAGCTGGTCGGAGAGGT-GAAATGCGCAAGTCGGGGATGGGTTTGGTC
129 CGGGCGCTCAGCCGGTCGGAGAGGTAG-AATGAGCAAGCCAGGGATCGGCCTGGTC
* *
16942728 CCCCCTGCATGCTATCGATCCTACTACCACAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATG
1 CCCCCTGCATGCTATCGATCCTACTACCGCAACCCTCAGTC-GGTCTGATCTTAGACTGGGAATG
* *
16942793 AACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTA
65 AACTCCGTATGCATAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTA
* *
16942857 CGGGTGCTTAGCCGGTCGGAGAGGTAGAATGAGCAAGCCAGGGATCGGCCTGGTC
129 CGGGCGCTCAGCCGGTCGGAGAGGTAGAATGAGCAAGCCAGGGATCGGCCTGGTC
*** * * *
16942912 CCCCCTATGTGCTGTCGATCCTACTACCGTAACCCTCGATTCGGTCTGATCTTAGACTGGGAATG
1 CCCCCTGCATGCTATCGATCCTACTACCGCAACCCTC-AGTCGGTCTGATCTTAGACTGGGAATG
16942977 AACTCC
65 AACTCC
16942983 ATCTGCCTAA
Statistics
Matches: 225, Mismatches: 25, Indels: 10
0.87 0.10 0.04
Matches are distributed among these distances:
183 2 0.01
184 218 0.97
185 5 0.02
ACGTcount: A:0.23, C:0.28, G:0.26, T:0.22
Consensus pattern (183 bp):
CCCCCTGCATGCTATCGATCCTACTACCGCAACCCTCAGTCGGTCTGATCTTAGACTGGGAATGA
ACTCCGTATGCATAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACG
GGCGCTCAGCCGGTCGGAGAGGTAGAATGAGCAAGCCAGGGATCGGCCTGGTC
Found at i:16943138 original size:641 final size:647
Alignment explanation
Indices: 16941903--16943160 Score: 1577
Period size: 641 Copynumber: 1.9 Consensus size: 647
16941893 CTGCCTACTG
* * * * * * *
16941903 TCGATCCTGCTGTCGCAACCCTCTGTCCGGTCTGATCTTAGACTGGGGATGAACTCCGTATGCTT
1 TCGATCCTGATGCCGCAACCCTCAGTCCAGTCTGATCTTAGACTAGGAATGAACTCCGTATGCAT
* * * * * * *
16941968 AGATTGGGGATGAACTCAATATGCCTAAGTCAACTCGTGAAGCGAGCGTGCGGGTGCTCAACCAG
66 AGACTGGGGATGAACTCAATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAACCAG
* * * * *
16942033 CCGGAGAGGCTGAATGTGTAAGCCGAGGATTGGTTCGGTCCCCTCCTGCGTGCTGTCGATCCTAC
131 CCGGAGAGGCTGAATGCGCAAGCCGAGGATGGGTTCGGTCCCCTCCTGCATGCTATCGATCCTAC
* *
16942098 TACTGGTCCTGCTAACGTAACCCTCGATCCGGTCTGATTTTAGACTGGGAATGAACTCCGTATGC
196 TA-----CC-GC-AACG-AACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
*
16942163 TTAGACATGGAAGGAACTCCGTATGCCTCAACCAACCCAAGAAACGAGTGTGCGGGTGCTCAGCC
253 TTAGACATGGAAGGAACTCCGTATGCCTCAACCAACCCAAGAAACGAGTGTACGGGTGCTCAGCC
* * * *
16942228 GACCGAAGAGGTAGAATGCGTAAGCCGGGGATCGACCCGATCCCCCACAATGTGCTGTCGATCTT
318 GACCGAAGAGGTAGAATGAGCAAGCCAGGGATCGACCCGATCCCCCACAATGTGCTGTCGATCCT
** * * * *
16942293 GTTATCGTAACCCTCGGTCCGATCCAATCTTAGACTGGTAATGAACTCCGTATGCCTAAGTCAAC
383 ACTACCGTAACCCTCGATCCGATCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAAC
* * ** * * * * *
16942358 CCATGAAACGAGTGTTCGGGTGCTGAGCCAGCCGGAGAGCCGTAATGCACAAGTCGGGGATAGGC
448 CAATGAAACAAACGTTCAGGTGCTGAACCAGCCGGAGAGCCATAATGCACAAGCCAGGGATAGGC
* * *
16942423 CCGATCCCCCTCTGCATCCTGCCGATCCCGCTACCATATCCCTCGATCCGACTGGGGCTTAGACA
513 CCGATCCCCCTCTGCATCCTGCCGATCCCACTACCATAACCCTCGATCCGACTGGGGCTTAAACA
16942488 TGGAATGAACTCCCTATGCCTAAGCCAACCCAGGAGACAAGCGTGCGGGCGCTCAGCCCCCTGCA
578 TGGAATGAACTCCCTATGCCTAAGCCAACCCAGGAGACAAGCGTGCGGGCGCTCAGCCCCCTGCA
16942553 TGCTA
643 TGCTA
16942558 TCGATCCTGATGCCGCAACCCTCAGTCCAGTCTGATCTTAGACTAGGAATGAACTCCGTATGCAT
1 TCGATCCTGATGCCGCAACCCTCAGTCCAGTCTGATCTTAGACTAGGAATGAACTCCGTATGCAT
** * **
16942623 AGACTGGGGATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAGCTGG
66 AGACTGGGGATGAACTCAATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAACCAG
* * * *
16942688 TCGGAGAGG-TGAAATGCGCAAGTCGGGGATGGGTTTGGTCCCC-CCTGCATGCTATCGATCCTA
131 CCGGAGAGGCTG-AATGCGCAAGCCGAGGATGGGTTCGGTCCCCTCCTGCATGCTATCGATCCTA
*
16942751 CTA-C-C-AC-AACCCTC-AGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
195 CTACCGCAACGAACCCTCGA-TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * * **
16942811 ATGGAATGAACTCCGTATGCCT-AAGCCAACCCATGAAACGAGTGTACGGGTGCTTAGCCGGTCG
259 ATGGAAGGAACTCCGTATGCCTCAA-CCAACCCAAGAAACGAGTGTACGGGTGCTCAGCCGACCG
* * * * *
16942875 GAGAGGTAGAATGAGCAAGCCAGGGATCGGCCTGGTCCCCC-CTATGTGCTGTCGATCCTACTAC
323 AAGAGGTAGAATGAGCAAGCCAGGGATCGACCCGATCCCCCACAATGTGCTGTCGATCCTACTAC
* * ** *
16942939 CGTAACCCTCGATTCGGTCTGATCTTAGACTGGGAATGAACTCCATCTGCCTAAGTCAACCAATG
388 CGTAACCCTCGATCCGATCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCAATG
* * * *
16943004 AAATAAACGTTCAGGTGCTGAACC-GATCGGAGAGGCATAATGCACAAGCCAGGGATCA-GCTCG
453 AAACAAACGTTCAGGTGCTGAACCAG-CCGGAGAGCCATAATGCACAAGCCAGGGAT-AGGCCCG
* * * * * * *
16943067 GTCTCTCTCTTCATGCTGCCGGTCCCACTACCATAACCCTCGATCC-AGTTGGGGCTTAAACATG
516 ATCCCCCTCTGCATCCTGCCGATCCCACTACCATAACCCTCGATCCGA-CTGGGGCTTAAACATG
*
16943131 GAATGAACTCCCTATGCCTAAGCTAACCCA
580 GAATGAACTCCCTATGCCTAAGCCAACCCA
16943161 TGAAACAGGC
Statistics
Matches: 516, Mismatches: 81, Indels: 26
0.83 0.13 0.04
Matches are distributed among these distances:
640 2 0.00
641 205 0.40
642 138 0.27
644 2 0.00
646 1 0.00
648 1 0.00
654 23 0.04
655 144 0.28
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (647 bp):
TCGATCCTGATGCCGCAACCCTCAGTCCAGTCTGATCTTAGACTAGGAATGAACTCCGTATGCAT
AGACTGGGGATGAACTCAATATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCGCTCAACCAG
CCGGAGAGGCTGAATGCGCAAGCCGAGGATGGGTTCGGTCCCCTCCTGCATGCTATCGATCCTAC
TACCGCAACGAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT
GGAAGGAACTCCGTATGCCTCAACCAACCCAAGAAACGAGTGTACGGGTGCTCAGCCGACCGAAG
AGGTAGAATGAGCAAGCCAGGGATCGACCCGATCCCCCACAATGTGCTGTCGATCCTACTACCGT
AACCCTCGATCCGATCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCAATGAAA
CAAACGTTCAGGTGCTGAACCAGCCGGAGAGCCATAATGCACAAGCCAGGGATAGGCCCGATCCC
CCTCTGCATCCTGCCGATCCCACTACCATAACCCTCGATCCGACTGGGGCTTAAACATGGAATGA
ACTCCCTATGCCTAAGCCAACCCAGGAGACAAGCGTGCGGGCGCTCAGCCCCCTGCATGCTA
Found at i:16943695 original size:26 final size:26
Alignment explanation
Indices: 16943657--16943709 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16943647 GGCTCAAACT
16943657 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16943683 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16943709 C
1 C
16943710 CTACGTCGAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16944029 original size:26 final size:26
Alignment explanation
Indices: 16944000--16944049 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
16943990 CCAGTCCAAT
16944000 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
16944026 CTTAGACTGGGGATGAACTTCATA
1 CTTAGACTAGGAATGAACTCCATA
16944050 CGCCTAAGTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:16944643 original size:26 final size:26
Alignment explanation
Indices: 16944614--16944692 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
16944604 CCGGTCCGAT
*
16944614 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
16944640 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
*
16944666 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
16944692 C
1 C
16944693 CCAAGTCACC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:16945399 original size:26 final size:25
Alignment explanation
Indices: 16945361--16945412 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
16945351 GGCCCAAACT
*
16945361 CTTAGACCGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACT-CGTATG
*
16945387 CTTAGACATGGAATGAACTCGTATG
1 CTTAGACAGGGAATGAACTCGTATG
16945412 C
1 C
16945413 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (25 bp):
CTTAGACAGGGAATGAACTCGTATG
Found at i:16945732 original size:26 final size:26
Alignment explanation
Indices: 16945703--16945755 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16945693 CCGGTTTGAT
* *
16945703 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
*
16945729 CTTAGACTGGGGATGAACTCAGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
16945755 C
1 C
16945756 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATG
Found at i:16946451 original size:26 final size:26
Alignment explanation
Indices: 16946400--16946451 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16946390 CTGGTCTGAT
**
16946400 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16946426 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
16946452 ACTAAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16947778 original size:184 final size:192
Alignment explanation
Indices: 16947559--16948055 Score: 530
Period size: 184 Copynumber: 2.5 Consensus size: 192
16947549 CTACTGCTGG
* * * *
16947559 TCCTGCTGTCGTAACCCTCAGTCCGATCCGATCTTAGACTGAGAATGAACTACATATGCTTAGAC
1 TCCTGCTATCGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGAC
* * * * * *
16947624 ATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGGGTGTGC-GG-G-C-GCTCAGTTG-
66 ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCAGGTGTCAGCTAACTGGA
* *
16947684 G-CC-A-GAGAGGCAGAATGAGCA-A-GTTGGGGATCAACCCGGTCCCTCTTGCATGCTACCGA
131 GACCTACGAGAGGCAGAAT--GCATAGGTCGGGGATCAACCCGGTCCCTCCTGCATGCTACCGA
* *
16947743 TCCTGCTATCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
1 TCCTGCTATCGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGAC
* * * *
16947808 -TAGGGATGAACTCCGTATGACTAAGTCAACCCATGAAATGAGTGTGCAGGTGTTCAGCTAACTG
66 AT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCAGGTG-TCAGCTAACTG
* *
16947872 GAAAGACCTATCGGAGAGGCAGAATGCATAGGTCGGGGATCGACCTGGTCCCTCCTGCATGCTAC
129 G--AGACCTA-C-GAGAGGCAGAATGCATAGGTCGGGGATCAACCCGGTCCCTCCTGCATGCTAC
16947937 CGA
190 CGA
*
16947940 TCCTGCTACCGGTCCTGTTGCCGTAACCCTCGGTTCGATCCGATCTTAGACTGGGAATGAACTCC
1 TCCTGCTA----------T--CGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCC
* *
16948005 ATACGCTTAGACATGGAATGGACTCCGTATGCCTAAGCCAACCCATGAAAC
54 ATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAC
16948056 AAGCGTACGG
Statistics
Matches: 255, Mismatches: 29, Indels: 33
0.80 0.09 0.10
Matches are distributed among these distances:
183 1 0.00
184 97 0.38
185 2 0.01
186 1 0.00
188 1 0.00
189 6 0.02
192 1 0.00
193 2 0.01
194 1 0.00
195 3 0.01
196 1 0.00
197 53 0.21
207 1 0.00
209 84 0.33
210 1 0.00
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.23
Consensus pattern (192 bp):
TCCTGCTATCGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGAC
ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCAGGTGTCAGCTAACTGGA
GACCTACGAGAGGCAGAATGCATAGGTCGGGGATCAACCCGGTCCCTCCTGCATGCTACCGA
Found at i:16947804 original size:26 final size:26
Alignment explanation
Indices: 16947775--16947826 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16947765 CCGGTCCGAT
16947775 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
16947801 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
16947827 ACTAAGTCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:16947933 original size:197 final size:198
Alignment explanation
Indices: 16947688--16948054 Score: 472
Period size: 209 Copynumber: 1.8 Consensus size: 198
16947678 CAGTTGGCCA
* *
16947688 GAGAGGCAGAATGAGCAAGTTGGGGATCAACCCGGTCCCTCTTGCATGCTACCGATCCTGCTA-T
1 GAGAGGCAGAAT-AGCAAGTCGGGGATCAACCCGGTCCCTCCTGCATGCTACCGATCCTGCTACT
* * * *
16947752 -CGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TAGGGAT
65 CCGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATACGCTTAGACAT-GGAAT
*
16947815 GAACTCCGTATGACTAAGTCAACCCATGAAATGAGTGTGCAGGTGTTCAGCTAACTGGAAAGACC
129 GAACTCCGTATGACTAAGCCAACCCATGAAATGAGTGTGCAGGTGTTCAGCTAACTGGAAAGACC
16947880 TATCG
194 TATCG
* *
16947885 GAGAGGCAGAAT-GCATAGGTCGGGGATCGACCTGGTCCCTCCTGCATGCTACCGATCCTGCTAC
1 GAGAGGCAGAATAGCA-A-GTCGGGGATCAACCCGGTCCCTCCTGCATGCTACCGATCCTGCTA-
*
16947949 CGGTCCTGTTGCCGTAACCCTCGGTTCGATCCGATCTTAGACTGGGAATGAACTCCATACGCTTA
63 -----C---T-CCGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATACGCTTA
* *
16948014 GACATGGAATGGACTCCGTATGCCTAAGCCAACCCATGAAA
119 GACATGGAATGAACTCCGTATGACTAAGCCAACCCATGAAA
16948055 CAAGCGTACG
Statistics
Matches: 143, Mismatches: 12, Indels: 18
0.83 0.07 0.10
Matches are distributed among these distances:
195 3 0.02
196 1 0.01
197 53 0.37
207 1 0.01
209 84 0.59
210 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.26, T:0.23
Consensus pattern (198 bp):
GAGAGGCAGAATAGCAAGTCGGGGATCAACCCGGTCCCTCCTGCATGCTACCGATCCTGCTACTC
CGTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATACGCTTAGACATGGAATGA
ACTCCGTATGACTAAGCCAACCCATGAAATGAGTGTGCAGGTGTTCAGCTAACTGGAAAGACCTA
TCG
Found at i:16948087 original size:393 final size:393
Alignment explanation
Indices: 16947221--16948131 Score: 1019
Period size: 393 Copynumber: 2.3 Consensus size: 393
16947211 GTCCGGCTGG
* *
16947221 GCTTAGACATGGAATGAACTCCCTATGCCCTAAGCCAACCCATGAAACGGGAGTGTGGGTGCTCA
1 GCTTAGACATGGAATGAACTCCGTATG-CCTAAGCCAACCCATGAAACGGGAGTGCGGGTGCTCA
* * * * * * * *
16947286 ACCGACCGGAGAGGCAGAATGCGCAAGTCAGGGATTGGCTCTGTCCCCCCTATG-TGCTGCTGAT
65 GCCG-CCGGAGAGGCAGAATGCGCAAGTTAGGGATCGGCCCGGT-CCCTCTATGCTGCTACCGAT
* *
16947350 CTTACTGCTGTAACCCTCAGTCCGGTCCAATCTTAAATTGGGAATGAACTCCATATACTTAGACT
128 CCTACTGCTGTAACCCTCAGTCCGGTCCAATCTTAAACTGGGAATGAACTCCATATACTTAGACT
* * * * *
16947415 GGGGATGAACTTCGTATGCCTAATTCAACCCATGAAACGAGTGTGCGGATGCTCAGCCCGACCAG
193 AGGGATGAACTCCGTATGACTAAGTCAACCCATGAAACGAGTGTGCGGATGCTCAGCCCAACCAG
* * ** * *
16947480 AGAGGCCAATCGAAGAGGCAAAATTTACAAGCCGGGGATCAGTGCGATCCCCCTTACGTGCTACC
258 AAAGACCAATCGAAGAGGCAAAATGCACAAGCCGGGGATCACTGCGATCCCCCTTACATGCTACC
* * *
16947545 GATCCTACTGCTGGTCCTGCTGTCGTAACCCTCAGTCCGATCCGATCTTAGACTGAGAATGAACT
323 GATCCTACTACCGGTCCTGCTGCCGTAACCCTCAGTCCGATCCGATCTTAGACTGAGAATGAACT
*
16947610 ACATAT
388 ACATAC
* * * *
16947616 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGGGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGGGAGTGCGGGTGCTCAG
** * * * **
16947681 TTGGCCAGAGAGGCAGAATGAGCAAGTTGGGGATCAACCCGGTCCCTCT-TGCATGCTACCGATC
66 -CCGCCGGAGAGGCAGAATGCGCAAGTTAGGGATCGGCCCGGTCCCTCTATGC-TGCTACCGATC
* * * * * * *
16947745 CTGCT-ATCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
129 CTACTGCT-GTAACCCTCAGTCCGGTCCAATCTTAAACTGGGAATGAACTCCATATACTTAGACT
* * * **
16947809 AGGGATGAACTCCGTATGACTAAGTCAACCCATGAAATGAGTGTGCAGG-TGTTCAG-CTAACTG
193 AGGGATGAACTCCGTATGACTAAGTCAACCCATGAAACGAGTGTGC-GGATGCTCAGCCCAACCA
* * * * * * *
16947872 GAAAGACCTATCGGAGAGGCAGAATGCATAGGTCGGGGATCGACCTG-G-TCCCTCC-TGCATGC
257 GAAAGACCAATCGAAGAGGCAAAATGCACAAGCCGGGGATC-A-CTGCGATCCC-CCTTACATGC
* * * * *
16947934 TACCGATCCTGCTACCGGTCCTGTTGCCGTAACCCTCGGTTCGATCCGATCTTAGACTGGGAATG
319 TACCGATCCTACTACCGGTCCTGCTGCCGTAACCCTCAGTCCGATCCGATCTTAGACTGAGAATG
*
16947999 AACTCCATAC
384 AACTACATAC
* ** * *
16948009 GCTTAGACATGGAATGGACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGGGAGTGCGGGTGCTCAG
* * *
16948074 CCAGCCGGAGAGGCAGAATGCGCTAGCTAGGGATCGGCCCGGTCCCTCTCTGCGTGCT
66 CC-GCCGGAGAGGCAGAATGCGCAAGTTAGGGATCGGCCCGGTCCCTCTATGC-TGCT
16948132 GTCGATCCCG
Statistics
Matches: 425, Mismatches: 81, Indels: 21
0.81 0.15 0.04
Matches are distributed among these distances:
392 2 0.00
393 210 0.49
394 183 0.43
395 30 0.07
ACGTcount: A:0.25, C:0.27, G:0.26, T:0.22
Consensus pattern (393 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGGGAGTGCGGGTGCTCAG
CCGCCGGAGAGGCAGAATGCGCAAGTTAGGGATCGGCCCGGTCCCTCTATGCTGCTACCGATCCT
ACTGCTGTAACCCTCAGTCCGGTCCAATCTTAAACTGGGAATGAACTCCATATACTTAGACTAGG
GATGAACTCCGTATGACTAAGTCAACCCATGAAACGAGTGTGCGGATGCTCAGCCCAACCAGAAA
GACCAATCGAAGAGGCAAAATGCACAAGCCGGGGATCACTGCGATCCCCCTTACATGCTACCGAT
CCTACTACCGGTCCTGCTGCCGTAACCCTCAGTCCGATCCGATCTTAGACTGAGAATGAACTACA
TAC
Found at i:16948266 original size:159 final size:158
Alignment explanation
Indices: 16948009--16948317 Score: 368
Period size: 159 Copynumber: 1.9 Consensus size: 158
16947999 AACTCCATAC
* * * * * *
16948009 GCTTAGACATGGAATGGACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAACCCAACCCACGAAACAAGCATACGGGCGCTCAG
* * * * * *
16948074 CCAGCCGGAGAGGCAGAATGCGCTAGCTAGGGATCGGCCCGGTCCCTCTCTGCGTGCTGTCGATC
66 CCAGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCCC-CCCTACGTGCTGTCGATC
*
16948139 CCGCTGCCACAACCCTCGGTCCAATTGGG
130 CCGCTACCACAACCCTCGGTCCAATTGGG
* ** *
16948168 GCTTAGACATGGAATGAACTCCCTATGCCTAACCCAACCGACGAAACGGGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAACCCAACCCACGAAACAAGCATACGGGCGCTCAG
* * * * *
16948233 -CTGATCGGAGAGGCAGAATGTGCAAGCCGGGGATCAGCTCGATCCCCCCTACGTGCTGTCGATC
66 CCAG-CCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCCCCCCTACGTGCTGTCGATC
** *
16948297 TTGCTACCGCAACCCTCGGTC
130 CCGCTACCACAACCCTCGGTC
16948318 TGGTCCGATC
Statistics
Matches: 124, Mismatches: 25, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
158 35 0.28
159 89 0.72
ACGTcount: A:0.22, C:0.32, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAACCCAACCCACGAAACAAGCATACGGGCGCTCAG
CCAGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCGATCCCCCCTACGTGCTGTCGATCC
CGCTACCACAACCCTCGGTCCAATTGGG
Found at i:16948368 original size:26 final size:26
Alignment explanation
Indices: 16948327--16948379 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16948317 CTGGTCCGAT
16948327 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16948353 CTTAGACTTGGG-ATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
16948379 C
1 C
16948380 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16949280 original size:159 final size:155
Alignment explanation
Indices: 16949054--16949563 Score: 486
Period size: 159 Copynumber: 3.2 Consensus size: 155
16949044 TAGATTGGGG
** * * * ** * * * *
16949054 ATGAACTCTGTATGCCTAAGTCAACCCATAAAACGAGTGCACGGGCGCTGAACCGATCGAAGAGG
1 ATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCAACCGAAGAGG
* * * ** *
16949119 CATAATACGTAAGCCGAGGATCGATCTGGTCCCCCTCTGCATGCTACCGATCCCGCTGCCACAAC
66 CATAATGCGCAAGCTG-GGATCGA-CTGGTCCCCCTCTGTGTGCTGCCGATCCCGCTGCCACAAC
16949184 CCTCGATCCGGTTAGGGCTTAGACATGGA
129 CCTCGATCCGGTT-GGGCTTAGAC-TGGA
* * * ** *
16949213 ATGAACTCCCTATGCCTAAGCCAACCCACTAAATGGGCGTGCGGGCGCTCAGCCGGCCGGAGAGG
1 ATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCAACCGAAGAGG
* * * * * * ** * *
16949278 CATAATGCACAAGCTGGGGATTGGCCCGATCCCCC-CTGTGTGCTGTCGATCCTACTGTCGCAAC
66 CATAATGCGCAAGCT-GGGA-TCGACTGGTCCCCCTCTGTGTGCTGCCGATCCCGCTGCCACAAC
* **
16949342 CCTC-AGTCTGGTCTGATCTTAGACTGGGA
129 CCTCGA-TCCGGT-TGGGCTTAGACT-GGA
** * *
16949371 ATGAACTCTGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTGAGCCAACCGAAGAGG
1 ATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCAACCGAAGAGG
*
16949436 CATAATGCGCAAGCTGGCGATCGACTTGGTCCCCCTCTGTGTGCTGCC-AGTCCCGCTGCCATAA
66 CATAATGCGCAAGCTGG-GATCGAC-TGGTCCCCCTCTGTGTGCTGCCGA-TCCCGCTGCCACAA
* *
16949500 CCCTTGATCCGGATGGGGCTTAGACGTGGA
128 CCCTCGATCCGG-TTGGGCTTAGAC-TGGA
16949530 ATGAACTCCCTATGCCTAAGCCAACCCACAAAAC
1 ATGAACTCCCTATGCCTAAGCCAACCCACAAAAC
16949564 AGGTGTGCAG
Statistics
Matches: 276, Mismatches: 63, Indels: 24
0.76 0.17 0.07
Matches are distributed among these distances:
157 7 0.03
158 120 0.43
159 143 0.52
160 6 0.02
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.20
Consensus pattern (155 bp):
ATGAACTCCCTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCAACCGAAGAGG
CATAATGCGCAAGCTGGGATCGACTGGTCCCCCTCTGTGTGCTGCCGATCCCGCTGCCACAACCC
TCGATCCGGTTGGGCTTAGACTGGA
Found at i:16949338 original size:343 final size:336
Alignment explanation
Indices: 16948699--16949801 Score: 1126
Period size: 343 Copynumber: 3.3 Consensus size: 336
16948689 CCGATCTGAT
* * * * * *
16948699 CTTAGACTGGGAATGAACTCCGTATGCATAAGTAAACCCACGAAATGAGCGTCCAGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAACGAGCG-CCGGGCGCTGAGC
* * * * *
16948764 TGATCGAAGAGGCAAAATGCGCAAGCCGGGGATCGGCCTGGTCCCCCTCTGCGTGCTGCTGGTCC
65 CGATCGAAGAGGCATAATGCGCAAGCC-GGGATC-GACTGGTCCCCCTCTGCGTGCTGCCGATCC
* * * *
16948829 CGCTGCCATAACTCTCGGTCCGATTGGGGCTTAGATGTGGAATGAACTCCCTATGCCTAAGCCAA
128 CGCTGCCATAACCCTCGATCCGGTTGGGGCTTAGACGTGGAATGAACTCCCTATGCCTAAGCCAA
* * ** **
16948894 CCCACGAAACGGGTGTGCGGGCGCTCAGTCGACCGGAGAGGCAGAATGCGCAAGCCAAGGATCAA
193 CCCACAAAACGGGTGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATTGA
*
16948959 CCCGATCCCCCCTGCGTGCTGTCGATCTTGCTGTCGCAACCCTCGATTCACTTTGATCTTAGACT
258 CCCGATCCCCCCTGCGTGCTGTCGATCTTACTGTCGCAACCCTCG--TCA-TTTGATCTTAGACT
16949024 GGGAATGAACTCCATATG
320 GGGAATGAACT-CATATG
* * * * * *
16949042 GTTAGATTGGGGATGAACTCTGTATGCCTAAGTCAACCCATAAAACGAGTGCACGGGCGCTGAAC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAACGAGCGC-CGGGCGCTGAGC
* * * *
16949107 CGATCGAAGAGGCATAATACGTAAGCCGAGGATCGATCTGGTCCCCCTCTGCATGCTACCGATCC
65 CGATCGAAGAGGCATAATGCGCAAGCCG-GGATCGA-CTGGTCCCCCTCTGCGTGCTGCCGATCC
* * *
16949172 CGCTGCCACAACCCTCGATCCGGTTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
128 CGCTGCCATAACCCTCGATCCGGTTGGGGCTTAGACGTGGAATGAACTCCCTATGCCTAAGCCAA
* * * * * * * *
16949237 CCCACTAAATGGGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCATAATGCACAAGCTGGGGATTGG
193 CCCACAAAACGGGTGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATTGA
* *
16949302 CCCGATCCCCCCTGTGTGCTGTCGATCCTACTGTCGCAA-CC-C-TCA---G----T---CT-GG
258 CCCGATCCCCCCTGCGTGCTGTCGATCTTACTGTCGCAACCCTCGTCATTTGATCTTAGACTGGG
*
16949353 --T---CT--GAT-
323 AATGAACTCATATG
*
16949359 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAACGAGCG-CCGGGCGCTGAGC
* * * *
16949424 CAACCGAAGAGGCATAATGCGCAAGCTGGCGATCGACTTGGTCCCCCTCTGTGTGCTGCC-AGTC
65 CGATCGAAGAGGCATAATGCGCAAGCCGG-GATCGAC-TGGTCCCCCTCTGCGTGCTGCCGA-TC
* *
16949488 CCGCTGCCATAACCCTTGATCCGGATGGGGCTTAGACGTGGAATGAACTCCCTATGCCTAAGCCA
127 CCGCTGCCATAACCCTCGATCCGGTTGGGGCTTAGACGTGGAATGAACTCCCTATGCCTAAGCCA
* * * *
16949553 ACCCACAAAACAGGTGTGCAGGTGCTCA-CTCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATT
192 ACCCACAAAACGGGTGTGCGGGCGCTCAGC-CGACCGGAGAGGCAGAATGCGCAAGCCGGGGATT
* * * ** * *
16949617 GATCCG-TTCCCCCTGCGTACTGTCGATCTTACTACCGCATCCCTCGGTCTGGTTTGATCTTAGA
256 GACCCGATCCCCCCTGCGTGCTGTCGATCTTACTGTCGCAACCCTC-GTC--ATTTGATCTTAGA
*
16949681 CTGGGAATGAACACAGTATG
318 CTGGGAATGAACTCA-TATG
* * * * ** *
16949701 CTTAGACTGGGGATGAACT-TCGTATGCTTAAGTCAACACACGAAACGAGCGTGTGGGCGCTCAG
1 CTTAGACTGGGAATGAACTCT-GTATGCCTAAGTCAACCCACAAAACGAGCG-CCGGGCGCTGAG
* * **
16949765 CCGA-CCAGAGAGGTAGGATGCGCAAGCCGGGGATCGA
64 CCGATCGA-AGAGGCATAATGCGCAAGCC-GGGATCGA
16949802 ATGGGTGGTA
Statistics
Matches: 623, Mismatches: 100, Indels: 75
0.78 0.13 0.09
Matches are distributed among these distances:
316 31 0.05
317 224 0.36
318 3 0.00
320 2 0.00
321 2 0.00
324 1 0.00
325 1 0.00
326 2 0.00
327 2 0.00
329 1 0.00
330 1 0.00
332 2 0.00
333 2 0.00
334 1 0.00
335 1 0.00
338 4 0.01
341 6 0.01
342 86 0.14
343 251 0.40
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.20
Consensus pattern (336 bp):
CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAACGAGCGCCGGGCGCTGAGCC
GATCGAAGAGGCATAATGCGCAAGCCGGGATCGACTGGTCCCCCTCTGCGTGCTGCCGATCCCGC
TGCCATAACCCTCGATCCGGTTGGGGCTTAGACGTGGAATGAACTCCCTATGCCTAAGCCAACCC
ACAAAACGGGTGTGCGGGCGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATTGACCC
GATCCCCCCTGCGTGCTGTCGATCTTACTGTCGCAACCCTCGTCATTTGATCTTAGACTGGGAAT
GAACTCATATG
Found at i:16949390 original size:158 final size:156
Alignment explanation
Indices: 16949201--16949692 Score: 472
Period size: 159 Copynumber: 3.1 Consensus size: 156
16949191 CCGGTTAGGG
* *
16949201 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACTAAATGGGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCGCTCAG
* * *
16949265 CCGGCCGGAGAGGCATAATGCACAAGCTGGGGATTGGCCCGATCCCCCCTGTGTGCTGTCGATCC
65 CCGACCGGAGAGGCATAATGCGCAAGCTGGGGATTGACCCG-TCCCCCCTGTGTGCTGTCGATCC
*
16949330 TACTGTCGCAACCCTCAGTCTGGTCTGAT
129 TACTGCCGCAACCCTCAGTCTGGT-TGAT
** * * *
16949359 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCGCTCAGC
* * * * ** *
16949424 CAACCGAAGAGGCATAATGCGCAAGCTGGCGATCGACTTGGTCCCCCTCTGTGTGCTG-CCAGTC
66 CGACCGGAGAGGCATAATGCGCAAGCTGGGGATTGAC-CCGTCCCCC-CTGTGTGCTGTCGA-TC
** ** * * * **
16949488 CCGCTGCCATAACCCT-TGATCCGGATGGGG
128 CTACTGCCGCAACCCTCAG-TCTGG-TTGAT
* * * *
16949518 CTTAGAC-GTGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACAGGTGTGCAGGTGCTCA-
1 CTTAGACTG-GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCGCTCAG
* * * * * * * *
16949581 CTCGACCAGAGAGGCAGAATGCGCAAGCCGGGGATTGATCCGTTCCCCCTGCGTACTGTCGATCT
65 C-CGACCGGAGAGGCATAATGCGCAAGCTGGGGATTGACCCGTCCCCCCTGTGTGCTGTCGATCC
* * *
16949646 TACTACCGCATCCCTCGGTCTGGTTTGAT
129 TACTGCCGCAACCCTCAGTCTGG-TTGAT
16949675 CTTAGACTGGGAATGAAC
1 CTTAGACTGGGAATGAAC
16949693 ACAGTATGCT
Statistics
Matches: 260, Mismatches: 63, Indels: 23
0.75 0.18 0.07
Matches are distributed among these distances:
157 42 0.16
158 107 0.41
159 110 0.42
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.21
Consensus pattern (156 bp):
CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGCGTGCGGGCGCTCAGC
CGACCGGAGAGGCATAATGCGCAAGCTGGGGATTGACCCGTCCCCCCTGTGTGCTGTCGATCCTA
CTGCCGCAACCCTCAGTCTGGTTGAT
Found at i:16949628 original size:159 final size:155
Alignment explanation
Indices: 16949054--16949630 Score: 482
Period size: 159 Copynumber: 3.6 Consensus size: 155
16949044 TAGATTGGGG
** * * * * * *
16949054 ATGAACTCTGTATGCCTAAGTCAACCCATAAAAC-GAGTGCACGGGCGCTGAACCGATCGAAGAG
1 ATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGCGTG--CGGGCGCTCAGCCGACCG-AGAG
* * * * ** *
16949118 GCATAATACGTAAGCCGAGGATCGATCTGGTCCCCCTCTGCATGCTACCGATCCCGCTGCCACAA
63 GCATAATGCGCAAGCCGGGGATCGATCCGGTCCCCCTCTGTGTGCTGCCGATCCCGCTGCCACAA
*
16949183 CCCTCGATCCGGTTAGGGCTTAGACATGGA
128 CCCTTGATCCGG-TAGGGCTTAGAC-TGGA
** *
16949213 ATGAACTCCCTATGCCTAAGCCAACCCACTAAATGGGCGTGCGGGCGCTCAGCCGGCCGGAGAGG
1 ATGAACTCCCTATGCCTAAGCCAACCCAC-AAAACGGCGTGCGGGCGCTCAGCCGACC-GAGAGG
* * * ** * * ** * *
16949278 CATAATGCACAAGCTGGGGATTGGCCCGATCCCCC-CTGTGTGCTGTCGATCCTACTGTCGCAAC
64 CATAATGCGCAAGCCGGGGATCGATCCGGTCCCCCTCTGTGTGCTGCCGATCCCGCTGCCACAAC
* * * **
16949342 CC-TCAGTCTGGTCTGATCTTAGACTGGGA
129 CCTTGA-TCCGGT-AGGGCTTAGACT-GGA
** * * *
16949371 ATGAACTCTGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTGAGCCAACCGAAGAGG
1 ATGAACTCCCTATGCCTAAGCCAACCCACAAAACG-GCGTGCGGGCGCTCAGCCGACCG-AGAGG
* * * *
16949436 CATAATGCGCAAGCTGGCGATCGA-CTTGGTCCCCCTCTGTGTGCTGCC-AGTCCCGCTGCCATA
64 CATAATGCGCAAGCCGGGGATCGATC-CGGTCCCCCTCTGTGTGCTGCCGA-TCCCGCTGCCACA
*
16949499 ACCCTTGATCCGGATGGGGCTTAGACGTGGA
127 ACCCTTGATCCGG-TAGGGCTTAGAC-TGGA
* * *
16949530 ATGAACTCCCTATGCCTAAGCCAACCCACAAAACAGGTGTGCAGGTGCTCA-CTCGACCAGAGAG
1 ATGAACTCCCTATGCCTAAGCCAACCCACAAAAC-GGCGTGCGGGCGCTCAGC-CGACC-GAGAG
* * *
16949594 GCAGAATGCGCAAGCCGGGGATTGATCCGTTCCCCCT
63 GCATAATGCGCAAGCCGGGGATCGATCCGGTCCCCCT
16949631 GCGTACTGTC
Statistics
Matches: 326, Mismatches: 74, Indels: 36
0.75 0.17 0.08
Matches are distributed among these distances:
157 9 0.03
158 117 0.36
159 185 0.57
160 11 0.03
161 4 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (155 bp):
ATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGCGTGCGGGCGCTCAGCCGACCGAGAGGCA
TAATGCGCAAGCCGGGGATCGATCCGGTCCCCCTCTGTGTGCTGCCGATCCCGCTGCCACAACCC
TTGATCCGGTAGGGCTTAGACTGGA
Found at i:16952280 original size:26 final size:26
Alignment explanation
Indices: 16952242--16952294 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16952232 GGCCCAAAAT
16952242 CTTAGACTGGGAATGAACTATGTATG
1 CTTAGACTGGGAATGAACTATGTATG
*
16952268 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTATGTATG
16952294 C
1 C
16952295 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTATGTATG
Found at i:16952588 original size:197 final size:197
Alignment explanation
Indices: 16952240--16952595 Score: 514
Period size: 197 Copynumber: 1.8 Consensus size: 197
16952230 GTGGCCCAAA
* *
16952240 ATCTTAGACTGGGAATGAACTATGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTATGTATGCTTAGACATGGAATGAACTCCGTATGCCAAAGCCAAC
* * ** * * *
16952305 CCATGAAACAAGCGTGCGGGCTCTCAGTCGGTCGGAGAGGCAGAATGCGCAAGCCAAGGATTGGT
66 CCACGAAACAAGCGTGCGGGCACTCAACCGGTCAGAGAGGCAGAATGCGCAAGCCAAGGATCGGC
** * *
16952370 CTGGTCCCCTCTTATGTGCTGTCGATCCTGCTACTGGTCCTGCTACCGCAACCCTTGGCCCGGTC
131 CCAGTCCCCTCCTACGTGCTGTCGATCCTGCTACTGGTCCTGCTACCGCAACCCTTGGCCCGGTC
16952435 TG
196 TG
* *
16952437 ATCTTAGACTGGGAATGAATTTTGTATGCTTAGACATGGAATGAACTCCGTATGCCAAAGCCAAC
1 ATCTTAGACTGGGAATGAACTATGTATGCTTAGACATGGAATGAACTCCGTATGCCAAAGCCAAC
* * * * *
16952502 CCACGAAACGAGCGTGTGGGCACTCAACCGGTCAGAGAGGCAGAATGCGCAGGCTAGGGATCGGC
66 CCACGAAACAAGCGTGCGGGCACTCAACCGGTCAGAGAGGCAGAATGCGCAAGCCAAGGATCGGC
* *
16952567 CCAGTCCCTTCCTACGTGCTGTTGATCCT
131 CCAGTCCCCTCCTACGTGCTGTCGATCCT
16952596 ACTATCACAA
Statistics
Matches: 137, Mismatches: 22, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
197 137 1.00
ACGTcount: A:0.24, C:0.26, G:0.27, T:0.23
Consensus pattern (197 bp):
ATCTTAGACTGGGAATGAACTATGTATGCTTAGACATGGAATGAACTCCGTATGCCAAAGCCAAC
CCACGAAACAAGCGTGCGGGCACTCAACCGGTCAGAGAGGCAGAATGCGCAAGCCAAGGATCGGC
CCAGTCCCCTCCTACGTGCTGTCGATCCTGCTACTGGTCCTGCTACCGCAACCCTTGGCCCGGTC
TG
Found at i:16952764 original size:159 final size:157
Alignment explanation
Indices: 16952465--16952965 Score: 470
Period size: 159 Copynumber: 3.2 Consensus size: 157
16952455 ATTTTGTATG
* * * *
16952465 CTTAGACATGGAATGAACTCCGTATGCCAAAGCCAACCCACGAAACGAGCGTGTGGGCACTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAAC
* * * * * * * * * *
16952530 CGGTCAGAGAGGCAGAATGCGCAGGCTAGGGATCGGCCCAGTCCCTTCCTACGTGCTGTTGATCC
66 CGGCCAGAGAGGCAAAATGCGCAAGCCAGGGATC-GCTCGGTCCCCT-CTGCGTGCTATCGATCC
*
16952595 TACTATCACAACCCTTGATCTGGTCTAAT
129 TACTATCACAACCCTTGATCTGGTCTGAT
* * * * * *
16952624 CTTAGAC-TGGAAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGGGCTGAG
1 CTTAGACATGG-AATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
* * *
16952688 CCGACCAAAGAGGCATAATGCGCAAGCCAGGGATCAGCTCGGTCCCCCTCTGCGTGCTATCGATC
65 CCGGCCAGAGAGGCAAAATGCGCAAGCCAGGGATC-GCTCGGT-CCCCTCTGCGTGCTATCGATC
** * * * * **
16952753 CCGCTACCACAACCC-TCAGTC-CGACTGGGG
128 CTACTATCACAACCCTTGA-TCTGGTCT-GAT
* * * *
16952783 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAACCATGAAACGGGCATGCGGGCGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAAC
* * * *
16952848 CGGCCAGAGAGGTAAAATGCGTAAGCCAGGGATCGATCCGATCCCCTCTGCGTGCTATCGATCCT
66 CGGCCAGAGAGGCAAAATGCGCAAGCCAGGGATCGCT-CGGTCCCCTCTGCGTGCTATCGATCCT
* * * * *
16952913 ACTGTCGCAACCCTCGGTCTGGTTTGAT
130 ACTATCACAACCCTTGATCTGGTCTGAT
* *
16952941 CTTAGA-TTGGGAATGAACTCTGTAT
1 CTTAGACAT-GGAATGAACTCCGTAT
16952966 ACTTAGATTA
Statistics
Matches: 268, Mismatches: 65, Indels: 19
0.76 0.18 0.05
Matches are distributed among these distances:
157 1 0.00
158 64 0.24
159 196 0.73
160 7 0.03
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.21
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAAC
CGGCCAGAGAGGCAAAATGCGCAAGCCAGGGATCGCTCGGTCCCCTCTGCGTGCTATCGATCCTA
CTATCACAACCCTTGATCTGGTCTGAT
Found at i:16952970 original size:26 final size:26
Alignment explanation
Indices: 16952941--16952991 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16952931 CTGGTTTGAT
*
16952941 CTTAGATT-GGGAATGAACTCTGTATA
1 CTTAGATTAGGG-ATGAACTCCGTATA
16952967 CTTAGATTAGGGATGAACTCCGTAT
1 CTTAGATTAGGGATGAACTCCGTAT
16952992 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.33
Consensus pattern (26 bp):
CTTAGATTAGGGATGAACTCCGTATA
Found at i:16954189 original size:26 final size:26
Alignment explanation
Indices: 16954148--16954200 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16954138 CCGATCCGAT
16954148 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
16954174 CTTAGACTGGCG-ATGAACTCTGTATG
1 CTTAGACTGG-GAATGAACTCTGTATG
16954200 C
1 C
16954201 CTAAGTTAGC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:16954921 original size:26 final size:25
Alignment explanation
Indices: 16954871--16954922 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
16954861 GGCTTAAAAT
*
16954871 CTTAGACGGGAATGAACTCCGTATG
1 CTTAGACGGGAATGAACTCCATATG
* *
16954896 CTTAGACATGGAATGAACTCTATATG
1 CTTAGAC-GGGAATGAACTCCATATG
16954922 C
1 C
16954923 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (25 bp):
CTTAGACGGGAATGAACTCCATATG
Found at i:16955444 original size:26 final size:26
Alignment explanation
Indices: 16955376--16955447 Score: 126
Period size: 26 Copynumber: 2.8 Consensus size: 26
16955366 CGAATCCTAC
* *
16955376 ACTGGGAATGAACTCCATATGCTTAG
1 ACTGGGGATGAACTCCGTATGCTTAG
16955402 ACTGGGGATGAACTCCGTATGCTTAG
1 ACTGGGGATGAACTCCGTATGCTTAG
16955428 ACTGGGGATGAACTCCGTAT
1 ACTGGGGATGAACTCCGTAT
16955448 ACCTAAGTCA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
ACTGGGGATGAACTCCGTATGCTTAG
Found at i:16955622 original size:26 final size:26
Alignment explanation
Indices: 16955593--16955645 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16955583 CCGATCTGAT
16955593 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
16955619 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
16955645 C
1 C
16955646 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:16955748 original size:196 final size:195
Alignment explanation
Indices: 16955397--16955749 Score: 478
Period size: 196 Copynumber: 1.8 Consensus size: 195
16955387 ACTCCATATG
* * *
16955397 CTTAGACTGGGGATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATACCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACCC
* * * *
16955462 ACGAAACGAGCATGCAGGCGCTCAGCCGACCGGAGTGGCAGAATGCACAAGCCGGGGATCGGCTC
66 ACAAAACGAGCATG-AGGAGCTCACCCGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCTC
16955527 GATTCCCCATGCGTGCTGCCGATCCTGCTGGTGGTCCTGCTTGTGCAACCCTCGATCCGATCTGA
130 GATTCCCCATGCGTGCTGCCGATCCTGCTGGTGGTCCTGCTTGTGCAACCCTCGATCCGATCTGA
16955592 T
195 T
*
16955593 CTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGAC-TGGGAATGAACTCCGTATACCTAAGCCAACC
* * * * * * *
16955657 CATAAAACGAACGTATG-GGAGCTCACCCGATCGGAGAGGCAGAATGCGCAAGTCGGTGATTGGC
65 CACAAAACG-A-GCATGAGGAGCTCACCCGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGGC
* * *
16955721 TCGA-TCCCCGCTGGGTGCTGTCGATCCTG
128 TCGATTCCCC-ATGCGTGCTGCCGATCCTG
16955750 TTGCCACAAC
Statistics
Matches: 135, Mismatches: 18, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
195 5 0.04
196 124 0.92
197 2 0.01
198 4 0.03
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.21
Consensus pattern (195 bp):
CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACCC
ACAAAACGAGCATGAGGAGCTCACCCGACCGGAGAGGCAGAATGCACAAGCCGGGGATCGGCTCG
ATTCCCCATGCGTGCTGCCGATCCTGCTGGTGGTCCTGCTTGTGCAACCCTCGATCCGATCTGAT
Found at i:16956122 original size:26 final size:26
Alignment explanation
Indices: 16956093--16956145 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16956083 TCGATCCGAT
16956093 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
16956119 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16956145 C
1 C
16956146 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16957228 original size:159 final size:158
Alignment explanation
Indices: 16956853--16957355 Score: 465
Period size: 158 Copynumber: 3.2 Consensus size: 158
16956843 AACTCCGTAT
* *
16956853 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGAGTGCCGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
* * * * **
16956918 TCGGTTGGAGAGGCAGAATGCACAAGCCAGGGACCGGCCCGATCCCCCCTATGTGCTGTCGATCC
66 CCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGACCGACCCGATCCCCCCTATGTGCTACCGATCC
* ****
16956983 TACTGTTGTAACCCTCAGTCCGATCCGA
131 CACTGCCACAACCCTCAGTCCGATCCGA
* * * * * *
16957011 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATTCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * ** * *
16957075 GCCAGTCAGAGAGGCATAATGCGCAAGCTGGGGATCGACCTGATCCCCCTCTACT-TGCTACCGA
65 ACCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGACCGACCCGATCCCCC-CTA-TGTGCTACCGA
* * ** *
16957139 TCCCGCTGCCACAACCCTC-GATCCGGTTGGG
128 TCCCACTGCCACAACCCTCAG-TCCGATCCGA
* *
16957170 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
* * * * * ** * **
16957235 CCGGCCGGAGAGGCAGAATGCGCAAGTCAGGGATCGGCCCGGTCCCCCCTGCGTGTTGTCGATCC
66 CCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGACCGACCCGATCCCCCCTATGTGCTACCGATCC
** * * * * *
16957300 TGCTACCATAACCCTCGGTCTGGTCCGA
131 CACTGCCACAACCCTCAGTCCGATCCGA
*
16957328 TCTTAGAC-TAGGAATGAACTCCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
16957356 TTAGACTAGG
Statistics
Matches: 272, Mismatches: 65, Indels: 16
0.77 0.18 0.05
Matches are distributed among these distances:
157 2 0.01
158 146 0.54
159 122 0.45
160 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAA
CCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGACCGACCCGATCCCCCCTATGTGCTACCGATCC
CACTGCCACAACCCTCAGTCCGATCCGA
Found at i:16957358 original size:26 final size:26
Alignment explanation
Indices: 16957329--16957381 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16957319 CTGGTCCGAT
16957329 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
16957355 CTTAGACTAGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
16957381 C
1 C
16957382 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:16957649 original size:197 final size:196
Alignment explanation
Indices: 16957309--16957688 Score: 489
Period size: 197 Copynumber: 1.9 Consensus size: 196
16957299 CTGCTACCAT
* * * **
16957309 AACCCTCGGTCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTAGGGATGAACT
1 AACCCTCGATCTGGTCCAATCTTAGACTAGGAATGAACTCCGTATCCTTAGACTAGCAATGAACT
** * * * *
16957374 TCGTATGCCTAAGTTAACCCATGAAACAAACGTGCGGGCACTCAGCTGACAGGAGAGGTAGAATG
66 TCGTATGCCTAAGCCAACCCATGAAACAAACGTGCGGGCACTCAGCCGACAGGAGAGGGAAAATA
* *
16957439 CGTAAGCCGAGGATTGACCCGATCCTCCCCTGCGTGCTATCGATCCTGCTACTGGTCCTGCTGTT
131 CGCAAGCCGAGGATCGACCCGATCC-CCCCTGCGTGCTATCGATCCTGCTACTGGTCCTGCTGTT
16957504 GC
195 GC
*
16957506 AACCCTCGATCTGGTCCAATCTTAGACTGGGAATGAACAT-CGTATCCTTAGACATA-CAATGAA
1 AACCCTCGATCTGGTCCAATCTTAGACTAGGAATGAAC-TCCGTATCCTTAGAC-TAGCAATGAA
* * **
16957569 C-TCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGATC-GGAGAGGGAA
64 CTTC-GTATGCCTAAGCCAACCCATGAAACAAACGTGCGGGCACTCAGCCGA-CAGGAGAGGGAA
* * * *
16957632 AATACGCAAGTCGAGGATCGGCCCGATCCCCCCTGTGTGCTATTGATCCTGCTACTG
127 AATACGCAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTATCGATCCTGCTACTG
16957689 CAACCCTCAG
Statistics
Matches: 157, Mismatches: 22, Indels: 9
0.84 0.12 0.05
Matches are distributed among these distances:
196 28 0.18
197 125 0.80
198 4 0.03
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.23
Consensus pattern (196 bp):
AACCCTCGATCTGGTCCAATCTTAGACTAGGAATGAACTCCGTATCCTTAGACTAGCAATGAACT
TCGTATGCCTAAGCCAACCCATGAAACAAACGTGCGGGCACTCAGCCGACAGGAGAGGGAAAATA
CGCAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTATCGATCCTGCTACTGGTCCTGCTGTTG
C
Found at i:16960349 original size:30 final size:30
Alignment explanation
Indices: 16960265--16960352 Score: 85
Period size: 30 Copynumber: 3.0 Consensus size: 30
16960255 TAGTCACGGA
16960265 ACACCTGATTCATCAATGTACAAAATGTGGC
1 ACACCTGATTCATCAATGTACAAAATGT-GC
** ** *
16960296 A-A-GAGCATTGGTC-A-GTCCAAAATGTGC
1 ACACCTG-ATTCATCAATGTACAAAATGTGC
16960323 ACACCTGATTCATCAATGTACAAAATGTGC
1 ACACCTGATTCATCAATGTACAAAATGTGC
16960353 GCCACATATT
Statistics
Matches: 42, Mismatches: 10, Indels: 11
0.67 0.16 0.17
Matches are distributed among these distances:
27 3 0.07
28 16 0.38
29 4 0.10
30 18 0.43
31 1 0.02
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.25
Consensus pattern (30 bp):
ACACCTGATTCATCAATGTACAAAATGTGC
Found at i:16960895 original size:26 final size:26
Alignment explanation
Indices: 16960854--16960905 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16960844 TTGATCCGAT
16960854 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
16960880 CTTAGACT-GGAGATGAACTCTGTATG
1 CTTAGACTGGGA-ATGAACTCTGTATG
16960906 TCTAAGTCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:16961624 original size:26 final size:26
Alignment explanation
Indices: 16961587--16961638 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16961577 GTTCAAACTG
16961587 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
16961613 TTAGACAT-GGAATGAACTTCGTATGC
1 TTAGAC-TGGGAATGAACTCCGTATGC
16961639 CTAAGCTAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:16962103 original size:159 final size:159
Alignment explanation
Indices: 16961739--16962174 Score: 364
Period size: 158 Copynumber: 2.7 Consensus size: 159
16961729 CAACCCTCAA
* * *
16961739 TCTGG-CTGGGGTTTTGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAGCGTG
1 TCTGGTCTGGGGCTTAGACATGGAATGAACTCCCAATGCCTAAGCCAACCCACGAAATGAGCGTG
* *
16961803 CGGGAGCTCAGCCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCGT
66 CGGGAGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGT
* * * *
16961868 GGTGTCGATCCAGTTACCATAACCCTCGG
131 GCTGCCGATCCAGTTACCACAACACTCGG
*** * * * * * *
16961897 TCTGGTCT-AATCGTAGAC-TAAGAATGAACT-CCATATGCCTCAGCCAACCTACGGAATGAGTG
1 TCTGGTCTGGGGCTTAGACAT-GGAATGAACTCCCA-ATGCCTAAGCCAACCCACGAAATGAGCG
* * * * * * ** *
16961959 TTCGGGCGTTGAGCTGACCGGAGAGGCATAATGCGCTTGCTGGGGATCCG-CCCGATCCCCCTCT
64 TGCGGGAGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGAT-CGACCCGATCCCCC-CT
* * *
16962023 GTGTGCTGCCGATCCCGTTGCCACAACACTCGG
127 GCGTGCTGCCGATCCAGTTACCACAACACTCGG
* *
16962056 T-TCGGT-TGGGGCTTAGACATGGAATGCACTCCCAATGCCTAAGCCAACCCATGAAACAGGCGT
1 TCT-GGTCTGGGGCTTAGACATGGAATGAACTCCCAATGCCTAAGCCAACCCACG-AA-A----T
* * * * * *
16962119 ACGGGCGTACGGGTGCTCAGCCGACCGAAGAGGTAGAATGCGCAAGCCGAGGATCG
59 --GAGCGTGCGGGAGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCG
16962175 GCCCAGTTCC
Statistics
Matches: 207, Mismatches: 54, Indels: 26
0.72 0.19 0.09
Matches are distributed among these distances:
157 3 0.01
158 91 0.44
159 66 0.32
160 5 0.02
161 1 0.00
165 1 0.00
166 2 0.01
167 38 0.18
ACGTcount: A:0.22, C:0.29, G:0.30, T:0.19
Consensus pattern (159 bp):
TCTGGTCTGGGGCTTAGACATGGAATGAACTCCCAATGCCTAAGCCAACCCACGAAATGAGCGTG
CGGGAGCTCAGCCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGT
GCTGCCGATCCAGTTACCACAACACTCGG
Found at i:16962262 original size:26 final size:26
Alignment explanation
Indices: 16962233--16962285 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16962223 CTGATCCGAT
16962233 CTTAGACTAG-GAATGAACTCTGTATG
1 CTTAGACTAGAG-ATGAACTCTGTATG
16962259 CTTAGACTAGAGATGAACTCTGTATG
1 CTTAGACTAGAGATGAACTCTGTATG
16962285 C
1 C
16962286 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGAGATGAACTCTGTATG
Found at i:16962996 original size:26 final size:26
Alignment explanation
Indices: 16962945--16962997 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16962935 GGCTCAAACT
*
16962945 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16962971 CTTAGACAT-GGAATGAACTTCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
16962997 C
1 C
16962998 CTAAGCCAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16964400 original size:26 final size:26
Alignment explanation
Indices: 16964362--16964414 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16964352 GGCTCAAACT
*
16964362 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16964388 CTTAGAC-GTGGAATGAACTCCATATG
1 CTTAGACTG-GGAATGAACTCCATATG
16964414 C
1 C
16964415 CTAACCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16965467 original size:26 final size:26
Alignment explanation
Indices: 16965429--16965479 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16965419 GGCTCAAACT
16965429 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16965455 CTTAGACAT-GGAATGAACTCCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
16965480 ACCTAAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16967510 original size:159 final size:159
Alignment explanation
Indices: 16967208--16967621 Score: 444
Period size: 159 Copynumber: 2.6 Consensus size: 159
16967198 AACTCCGTAT
* * * * *
16967208 GCTTAGACTGGGGATGAACTCCGTATGCCTAAATCAACCCACGAAACGAGTGTGCGAGCGCTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAG
** * * * *
16967273 CTTGTCGGAGAGGCAGAATGCGTAAGTCGAGGATCGGCCCAGTCCCCCTCTGCGTGCTGCTGGTC
66 CCGGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCAGTCCCCCTCTGCATGCTGCTGATC
* *
16967338 CCACTGCCACAACCCTCGAT-C-TTGCTGGG
131 CCACTGCCACAACCCTCGATACGGT-CT-GA
* * **
16967367 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAATGCACAAAACGAGCGTGCGGGCGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCA
*
16967431 GCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCAGTCCCTCC-CTGCATGCTG-TCG
65 GCCGGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCAGTCCC-CCTCTGCATGCTGCT-G
*** ** *
16967494 ATCTTGCTTTCGCAACCCTCGATACGGTCTGA
128 ATCCCACTGCCACAACCCTCGATACGGTCTGA
* * * ** *
16967526 TCTTAGACTGGGAATGAACTCCGTATGCGTAAGTCAACCCATGAAAA-GAGCGTTTGGGCGCTGA
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA-CAAAACGAGCGTGCGGGCGCTCA
* *
16967590 GCCGGCCGGAGAGGCATAATGCGTAAGCCGGG
65 GCCGGTCGGAGAGGCAGAATGCGTAAGCCGGG
16967622 TGTCAAGGAC
Statistics
Matches: 211, Mismatches: 37, Indels: 14
0.81 0.14 0.05
Matches are distributed among these distances:
158 2 0.01
159 198 0.94
160 10 0.05
161 1 0.00
ACGTcount: A:0.22, C:0.29, G:0.30, T:0.19
Consensus pattern (159 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAG
CCGGTCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCAGTCCCCCTCTGCATGCTGCTGATC
CCACTGCCACAACCCTCGATACGGTCTGA
Found at i:16974603 original size:158 final size:158
Alignment explanation
Indices: 16974295--16974641 Score: 359
Period size: 158 Copynumber: 2.2 Consensus size: 158
16974285 AACTCCGTAT
* *
16974295 GCTTAGGCATGGAATGAACTCCGTATGGC-TAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTAT-GCTTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
** ** * *
16974359 GTCGGTCGGAGAGGCAGAATGCATAAGCCAAGGATCAGCCCGGTCTCCCACTGTGTATTGCTGGT
65 ACCGACCGGAGAGGCAGAATGCATAAGCCAAGGATCAGCCCGATCTCCCACTGTGTATTGCTGAT
* *
16974424 CTCATTGCCACAACCTCAGTCTGG-CTGGG
130 CTCACTGCCACAACCTCAGTCTGGTCT-GA
* *
16974453 GCTTAGACATGGAATGAACTCCTTATGCTTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * *** *
16974518 CCGACCGGAGAGGTAGAATGCGTAAGCTGGGGATCAGCCCGATC-CCCCCTGCGTGCTA-T-C-G
66 CCGACCGGAGAGGCAGAATGCATAAGCCAAGGATCAGCCCGATCTCCCACT--GTG-TATTGCTG
* * *
16974579 ATC-CTACTGTCACAATGCTTAGTCTGGTCTGA
128 ATCTC-ACTGCCACAA-CCTCAGTCTGGTCTGA
* *
16974611 TCTTAGAC-TGTGAATGAACTTCGTATGCTTA
1 GCTTAGACATG-GAATGAACTCCGTATGCTTA
16974642 GACTGGGGAT
Statistics
Matches: 157, Mismatches: 24, Indels: 16
0.80 0.12 0.08
Matches are distributed among these distances:
156 1 0.01
157 20 0.13
158 128 0.82
159 6 0.04
160 2 0.01
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.22
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCTTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
CCGACCGGAGAGGCAGAATGCATAAGCCAAGGATCAGCCCGATCTCCCACTGTGTATTGCTGATC
TCACTGCCACAACCTCAGTCTGGTCTGA
Found at i:16974653 original size:26 final size:26
Alignment explanation
Indices: 16974612--16974664 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16974602 CTGGTCTGAT
* *
16974612 CTTAGACTGTGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16974638 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16974664 C
1 C
16974665 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16974856 original size:26 final size:26
Alignment explanation
Indices: 16974807--16974857 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
16974797 CCATTTCGAT
*
16974807 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
*
16974833 CTTAGACAT-GGAATGAAATTCGTAT
1 CTTAGAC-TGGGAATGAAATCCGTAT
16974858 ACCTAAGCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:16975305 original size:355 final size:352
Alignment explanation
Indices: 16974637--16975468 Score: 877
Period size: 355 Copynumber: 2.3 Consensus size: 352
16974627 AACTTCGTAT
* * * * *
16974637 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCAGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACG-GCGTGCGGGCGCTCA
* * * * * *
16974701 GCCGGTCGGAGAGGCAGAATGCATAAGCCAGGG-TCGGCCC-AGTCCCCCCTGTATGTTGTCGAT
64 GTCGGT-GGAGAGGCAGAATGCATAAGTCGGGGATCGACCCGA-TCCCCCCTGTGTGCTGTCGAT
* * * * * *
16974764 CTTGCTATTGGTCTTGCTGCCACAACCCTCAATCCATTTCGATCTTAGACTGGGAATGAACTCCG
127 CTTGCTACTGGTCCTGCTACCACAACCCTCAATCCATCTCAATCTTAGACTAGGAATGAACTCCG
*
16974829 TATGCTTAGACATGGAATGAAATTCGTATACCTAAGCCAACCCACAAAACGAGCACGTGGGGGAC
192 TATGCTTAGACATGGAATGAAATCCGTATACCTAAGCCAACCCACAAAACGAG-ACGTGGGGGAC
* * *
16974894 CAACCGGTCGGTGAGGCATAATGCGCAAGTCGGGGACCAGCCCAATCCCCCTCTGCGTGCTACCA
256 CAACCGATCGGAGAGGCATAATGCGCAAGCCGGGGACCAGCCCAATCCCCCTCTGCGTGCTACCA
* * * *
16974959 GTCCCACTGCCACAACCCTCTGTTCAG-TTGGG
321 ATCCCACTACCACAACCCTC-GATCAGACTGGG
* * *
16974991 GCTTAGACATGGAATGAACTCCCTATGCTTAAGCCAACCCACGAAACAGGCGTGCGGGCGCTCAT
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAAC-GGCGTGCGGGCGCTCAG
*
16975056 TCGGCTGGAGAGGCAGAATGCGTAAGTCGGGGATCGACCCGATCCCCCCTGTGTGCTGTCGATCT
65 TCGG-TGGAGAGGCAGAATGCATAAGTCGGGGATCGACCCGATCCCCCCTGTGTGCTGTCGATCT
* * * * * ** *
16975121 TGTTGCTGGTCCTGTTACCATAACCCTCGATTTGATCT-AATCTTAGGCTAGGAATGAACTCCGT
129 TGCTACTGGTCCTGCTACCACAACCCTC-AATCCATCTCAATCTTAGACTAGGAATGAACTCCGT
* * * ** *
16975185 ATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTATGAAACGAG-TGTGCGGGCG-C
193 ATGCTTAGACATGGAATGAAATCCGTATACCTAAGCCAACCCACAAAACGAGACGTG-GGG-GAC
* * * ** * *** * **
16975248 TAAGCCTATCGGAGAGGTATAATGCGTGAGCCGGGGATCAGCCTGGTCCCTCTCTGCGTGCTGTC
256 CAA-CCGATCGGAGAGGCATAATGCGCAAGCCGGGGACCAGCCCAATCCCCCTCTGCGTGCTACC
* * * *
16975313 AATCTCATTACCATAACCCTCGATCCGACTGGG
320 AATCCCACTACCACAACCCTCGATCAGACTGGG
* * * *
16975346 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGGCTTGTGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAA-CGGCGTGCGGGCGCTCAG
* * * * *
16975411 TCGGATGGAGAGGTAGAATGCACAAGTCGGGGATCGACCCGGTCCCCCTTGCGTGCTG
65 TCGG-TGGAGAGGCAGAATGCATAAGTCGGGGATCGACCCGATCCCCCCTGTGTGCTG
16975469 CTGATCCTGC
Statistics
Matches: 394, Mismatches: 73, Indels: 21
0.81 0.15 0.04
Matches are distributed among these distances:
353 3 0.01
354 89 0.23
355 296 0.75
356 6 0.02
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.22
Consensus pattern (352 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGCGTGCGGGCGCTCAGT
CGGTGGAGAGGCAGAATGCATAAGTCGGGGATCGACCCGATCCCCCCTGTGTGCTGTCGATCTTG
CTACTGGTCCTGCTACCACAACCCTCAATCCATCTCAATCTTAGACTAGGAATGAACTCCGTATG
CTTAGACATGGAATGAAATCCGTATACCTAAGCCAACCCACAAAACGAGACGTGGGGGACCAACC
GATCGGAGAGGCATAATGCGCAAGCCGGGGACCAGCCCAATCCCCCTCTGCGTGCTACCAATCCC
ACTACCACAACCCTCGATCAGACTGGG
Found at i:16975541 original size:26 final size:26
Alignment explanation
Indices: 16975505--16975557 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16975495 CCTGTCTGAT
*
16975505 CTTAGACTGGGAATGAACTTCTTATG
1 CTTAGACTGGGAATGAACTCCTTATG
* *
16975531 CTTAGACTGGGGATGATCTCCTTATG
1 CTTAGACTGGGAATGAACTCCTTATG
16975557 C
1 C
16975558 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.19, G:0.25, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCTTATG
Found at i:16976056 original size:159 final size:154
Alignment explanation
Indices: 16975713--16976210 Score: 410
Period size: 159 Copynumber: 3.2 Consensus size: 154
16975703 CCGAATTGAT
* * *
16975713 CTTAGACTCGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCATGTGGGCGCAC-AG
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGT-TCGG-GCACTAG
* * * * * * *
16975777 TCGACCGGAGAGGCAGAAAGCGCAA-ACCAGGGACCGGCCCATCCCCCTGCGTGCTGTTGATCCT
63 CCGACCGGAGAGGCAGAATGCGCAAGA-CAGGGATCGACCCATCCCCCTGCATGCTGTCGATCCC
* ** * * * *
16975841 GCTGTCGTAACCCTCTGTCTGGTTCGAT
127 GCTGCCACAACCCTCTGACCGGCTCGAG
* *
16975869 CTTAGATTTGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGCACTGAGC
1 CTTAGA-CTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTTCGGGCACT-AGC
* * *
16975934 CGACCGGAGAGGCATAATGCGCAAGACGGGGATCGACCCAATCCCCCACTGCATGCTGTCGGTCC
64 CGACCGGAGAGGCAGAATGCGCAAGACAGGGATCGACCC-AT-CCCC-CTGCATGCTGTCGATCC
* *
16975999 CGCTGCCACAACCCTCTGACCGGCTGGGG
126 CGCTGCCACAACCCTCTGACCGGCTCGAG
* * * * ** *
16976028 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAAGCGCTCAGC
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTTCGGGCACT-AGC
* * * * * *
16976093 CGGCCGGAGAGGTAGAATGTGCAAGCCAGGGATCGA-CCAGGTCCCTCCTGCGTGCTATCGATCC
64 CGACCGGAGAGGCAGAATGCGCAAGACAGGGATCGACCCA--TCCC-CCTGCATGCTGTCGATCC
* * ** * * * *
16976157 TGTTGCCGTAACCCTCAGTCC-GATCCGAT
126 CGCTGCCACAACCCTCTGACCGGCT-CGAG
*
16976186 CTTAGACTGGGAATGAACTCTGTAT
1 CTTAGACT-GGAATGAACTCCGTAT
16976211 TTTTAGACTG
Statistics
Matches: 274, Mismatches: 55, Indels: 24
0.78 0.16 0.07
Matches are distributed among these distances:
154 4 0.01
155 3 0.01
156 80 0.29
157 8 0.03
158 60 0.22
159 119 0.43
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (154 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTTCGGGCACTAGCCG
ACCGGAGAGGCAGAATGCGCAAGACAGGGATCGACCCATCCCCCTGCATGCTGTCGATCCCGCTG
CCACAACCCTCTGACCGGCTCGAG
Found at i:16976844 original size:11 final size:11
Alignment explanation
Indices: 16976815--16976847 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
16976805 CGGTTAGGCT
*
16976815 CTCCGACAATG
1 CTCCGACGATG
16976826 CTCCGACGATG
1 CTCCGACGATG
16976837 CTCCGACGATG
1 CTCCGACGATG
16976848 GTGCCCCAGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.21, C:0.36, G:0.24, T:0.18
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:16976955 original size:26 final size:26
Alignment explanation
Indices: 16976917--16976969 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16976907 GGCTCAAACT
*
16976917 CTTAGACTGGGAATGAACACCGTATG
1 CTTAGACTGGGAATGAACACCATATG
*
16976943 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACACCATATG
16976969 C
1 C
16976970 CGAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCATATG
Found at i:16977840 original size:158 final size:159
Alignment explanation
Indices: 16977351--16977845 Score: 398
Period size: 158 Copynumber: 3.1 Consensus size: 159
16977341 ACTCCATATG
* * * * * * * *
16977351 CTTAGACAT-GGAATGAACTCCATATGACTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 CTTAGA-ATGGGAATAAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGTGCCCAG
* * * * * * * * *
16977415 CCGATC-GAAGAGGTAGAA-TGCACAAG-CTTGGGATCGGCCCTATCCACC-CTACGTGCTGTCG
65 CCGACCAG-AGAGGCAGAATTGCGCAAGTC-GGGGATCGGCCCAATCCCCCTCTGCGTGCTGCCA
* * *
16977476 ATCCTACTACTGTAACCCTCTGTCCGGTCTGAT
128 ATCCTACTACCGTAACCCTCAGTCC-GTCTAAT
* * * * **
16977509 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTTCAGGTGCTGAGC
1 CTTAGAATGGGAATAAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGTGCCCAGC
* *
16977574 CGACCAGAGAGGCATAATTGCGCAAGTCGGGGATCGGCCCAATCCCCCTCTGCGTGCTGCCAGTC
66 CGACCAGAGAGGCAGAATTGCGCAAGTCGGGGATCGGCCCAATCCCCCTCTGCGTGCTGCCAATC
** * ** * **
16977639 CCGCTGCCACAACCCTCAGTCCGGCTAGGG
131 CTACTACCGTAACCCTCAGTCCGTCTA-AT
* *
16977669 CTTAGACAT-GGAATAAACTATC-TATGCCTAAGCCAACCCATGAAATGGGCGTGCAAGG-GCCC
1 CTTAGA-ATGGGAATAAACT-TCGTATGCCTAAGCCAACCCATGAAACGAGCGTGC-AGGTGCCC
* * * * ***
16977731 AGTCGACCGGAGAGGCAGAA-TGCGTAAGTCGGGGATCGGTCTGGTCCCCCT-TGCGTGCTGCCA
63 AGCCGACCAGAGAGGCAGAATTGCGCAAGTCGGGGATCGGCCCAATCCCCCTCTGCGTGCTGCCA
* *
16977794 ATCCTACTACCGTAACCCTCGGTCCTGTCCAAT
128 ATCCTACTACCGTAACCCTCAGTCC-GTCTAAT
* *
16977827 CTTAGATTGGGAATTAACT
1 CTTAGAATGGGAATAAACT
16977846 CCATATGCTT
Statistics
Matches: 265, Mismatches: 61, Indels: 22
0.76 0.18 0.06
Matches are distributed among these distances:
157 2 0.01
158 110 0.42
159 57 0.22
160 90 0.34
161 6 0.02
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (159 bp):
CTTAGAATGGGAATAAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGTGCCCAGC
CGACCAGAGAGGCAGAATTGCGCAAGTCGGGGATCGGCCCAATCCCCCTCTGCGTGCTGCCAATC
CTACTACCGTAACCCTCAGTCCGTCTAAT
Found at i:16977856 original size:26 final size:26
Alignment explanation
Indices: 16977827--16977879 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16977817 CCTGTCCAAT
* *
16977827 CTTAGATTGGGAATTAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
16977853 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
16977879 C
1 C
16977880 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16979008 original size:13 final size:13
Alignment explanation
Indices: 16978987--16979021 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
16978977 CTTAGTCAGC
*
16978987 CGAAAAGGCCGAT
1 CGAAGAGGCCGAT
16979000 CGAAGAGGCCGAT
1 CGAAGAGGCCGAT
*
16979013 CGGAGAGGC
1 CGAAGAGGC
16979022 AGAATGTGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.31, C:0.23, G:0.40, T:0.06
Consensus pattern (13 bp):
CGAAGAGGCCGAT
Found at i:16980350 original size:26 final size:26
Alignment explanation
Indices: 16980310--16980362 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16980300 GGCTCAATCT
16980310 CTTAGACTGGAAATGAACTTCGTATG
1 CTTAGACTGGAAATGAACTTCGTATG
16980336 CTTAGACATGG-AATGAACTTCGTATG
1 CTTAGAC-TGGAAATGAACTTCGTATG
16980362 C
1 C
16980363 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTTCGTATG
Found at i:16980678 original size:158 final size:158
Alignment explanation
Indices: 16980335--16980634 Score: 372
Period size: 158 Copynumber: 1.9 Consensus size: 158
16980325 AACTTCGTAT
* * *
16980335 GCTTAGACATGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAA
1 GCTTAGACCTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
*** ** * *
16980400 CCGGTTGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCAGTCCTCCTCTACGTGCTGTCGGTC
66 CCGACCGGAGAGACAGAATGCGCAAGCCGGGGATCAGCCCAGTCCTCCTCTACGTGCTGTCGATC
*
16980465 CCACTACCACAACCCTTGGTCCAGCTAG
131 CCACTACCACAACCCTTGGTCCAGCGAG
* *
16980493 GGTTAGACCTGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-AGGCGTGCGGGCGCTCA
1 GCTTAGACCTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGGCGCTCA
** * ** *
16980557 GTCGACCGGAGAGACAGAATGCGTAAGCCGGGGATCAGCCTGGT-C-CCTCCTACGTGCTGTTGA
65 ACCGACCGGAGAGACAGAATGCGCAAGCCGGGGATCAGCCCAGTCCTCCT-CTACGTGCTGTCGA
**
16980620 TCCTGCTACCACAAC
129 TCCCACTACCACAAC
16980635 TTTTGGTCTG
Statistics
Matches: 120, Mismatches: 20, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
156 3 0.03
157 27 0.22
158 90 0.75
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACCTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
CCGACCGGAGAGACAGAATGCGCAAGCCGGGGATCAGCCCAGTCCTCCTCTACGTGCTGTCGATC
CCACTACCACAACCCTTGGTCCAGCGAG
Found at i:16981897 original size:26 final size:26
Alignment explanation
Indices: 16981866--16981916 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
16981856 CTGGTCTGAT
*
16981866 CTTAGAC-TGGGAACGATCTCCGTATA
1 CTTAGACAT-GGAACGAACTCCGTATA
*
16981892 CTTAGACATGGAATGAACTCCGTAT
1 CTTAGACATGGAACGAACTCCGTAT
16981917 GCCTAAGCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAACGAACTCCGTATA
Found at i:16981972 original size:196 final size:196
Alignment explanation
Indices: 16981638--16981996 Score: 517
Period size: 196 Copynumber: 1.8 Consensus size: 196
16981628 ATGCTACCGA
* * *
16981638 TCTTGCTGCCGCAACCCTCAATTCGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
1 TCTTGCTGCCGCAACCCTCAATTCGGTCTGATCTTAGACTGGGAACGAACTCCGTATACTTAGAC
* * * * *
16981703 TAAGGATGAACTCCGTATGCCTAAGTCAACCCACGAAGCGAGCGTGTGGGTGCTCAACCGATCGA
66 TAAGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCAATCGA
* *
16981768 AGAGGTAGAATACGTAAGTCGGGGATCGGCCTGATTCCCCCTGCGTGTTACTGATCCTACTGCTG
131 AGAGGTAGAATACGTAAGCCGGGGACCGGCCTGATTCCCCCTGCGTGTTACTGATCCTACTGCTG
16981833 G
196 G
* *
16981834 TCTTGCTGCCGCAACCCTCGA-TCTGGTCTGATCTTAGACTGGGAACGATCTCCGTATACTTAGA
1 TCTTGCTGCCGCAACCCTCAATTC-GGTCTGATCTTAGACTGGGAACGAACTCCGTATACTTAGA
* * *
16981898 C-ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCT-AAGCCAAT
65 CTAAGG-ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA-CCAAT
* *
16981961 CGGAGAGGTAGAATGCGTAAGCCGGGGACCGGCCTG
128 CGAAGAGGTAGAATACGTAAGCCGGGGACCGGCCTG
16981997 GTCCCTCCTA
Statistics
Matches: 143, Mismatches: 17, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
195 7 0.05
196 136 0.95
ACGTcount: A:0.24, C:0.26, G:0.27, T:0.23
Consensus pattern (196 bp):
TCTTGCTGCCGCAACCCTCAATTCGGTCTGATCTTAGACTGGGAACGAACTCCGTATACTTAGAC
TAAGGATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCAATCGA
AGAGGTAGAATACGTAAGCCGGGGACCGGCCTGATTCCCCCTGCGTGTTACTGATCCTACTGCTG
G
Found at i:16983128 original size:26 final size:26
Alignment explanation
Indices: 16983090--16983145 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
16983080 GGCTCAAACT
16983090 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16983116 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
16983142 CTTA
1 CTTA
16983146 AGCCAACCAA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 28 0.97
27 1 0.03
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16983569 original size:26 final size:26
Alignment explanation
Indices: 16983528--16983580 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16983518 CCGGTCCGAT
*
16983528 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16983554 CTTAGACTGAGG-ATGAACTCCGTATG
1 CTTAGACTG-GGAATGAACTCCGTATG
16983580 C
1 C
16983581 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16984288 original size:26 final size:26
Alignment explanation
Indices: 16984251--16984303 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
16984241 GGCTCAAACT
*
16984251 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
16984277 CTTAGA-TAAGGAATGAACTCCATATG
1 CTTAGACT-AGGAATGAACTCCATATG
16984303 C
1 C
16984304 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:16984628 original size:26 final size:26
Alignment explanation
Indices: 16984592--16984644 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16984582 CTGGTTCGGT
16984592 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16984618 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16984644 C
1 C
16984645 CTAAGTCAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16985042 original size:158 final size:159
Alignment explanation
Indices: 16984768--16985071 Score: 355
Period size: 158 Copynumber: 1.9 Consensus size: 159
16984758 CTACTATCAC
*
16984768 AACCCTCGGTCCGATTCGATCTTAGACTGCGAGTGAACTTCGTATGCCTAAGCCAACCCACGAAA
1 AACCCTCGGTCCGATTCGATCTTAGACTGCGAATGAACTTCGTATGCCTAAGCCAACCCACGAAA
* * * * * *
16984833 TGAGCGTGTGGTTGCTCAATCGACTGGAGAGGCAAAATGCATAAGCTGGGGATCGGCCCGATCCC
66 TGAGCGTGTGGGTGCTCAAGCGACCGGAGAGGCAAAATGCACAAGCCGGGGATCGACCCGATCCC
16984898 CC-CTACGTGCTGTCGATCCTACTACCGT
131 CCTCTACGTGCTGTCGATCCTACTACCGT
* * * * * *
16984926 AACCCTTGGTCCG-GTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGCA
1 AACCCTCGGTCCGATTC-GATCTTAGACTGCGAATGAACTTCGTATGCCTAAGCCAACCCACGAA
* * * * * * * *
16984990 ATGAGCGT-TCGGGTGCTGAGGCTG-CCGGATAGGCATAATGCGCAAGCCGGGGATCTACCTGGT
65 ATGAGCGTGT-GGGTGCTCAAGC-GACCGGAGAGGCAAAATGCACAAGCCGGGGATCGACCCGAT
*
16985053 CCCCCTCTGCGTGCTGTCG
128 CCCCCTCTACGTGCTGTCG
16985072 GTCTCGCTGC
Statistics
Matches: 120, Mismatches: 22, Indels: 7
0.81 0.15 0.05
Matches are distributed among these distances:
157 3 0.03
158 104 0.87
159 13 0.11
ACGTcount: A:0.21, C:0.28, G:0.27, T:0.23
Consensus pattern (159 bp):
AACCCTCGGTCCGATTCGATCTTAGACTGCGAATGAACTTCGTATGCCTAAGCCAACCCACGAAA
TGAGCGTGTGGGTGCTCAAGCGACCGGAGAGGCAAAATGCACAAGCCGGGGATCGACCCGATCCC
CCTCTACGTGCTGTCGATCCTACTACCGT
Found at i:16985582 original size:14 final size:14
Alignment explanation
Indices: 16985563--16985594 Score: 50
Period size: 12 Copynumber: 2.4 Consensus size: 14
16985553 AAATGCTCTT
16985563 TAAGGGGGCCAATA
1 TAAGGGGGCCAATA
16985577 TAA--GGGCCAATA
1 TAAGGGGGCCAATA
16985589 TAAGGG
1 TAAGGG
16985595 CCAAGTACCA
Statistics
Matches: 16, Mismatches: 0, Indels: 4
0.80 0.00 0.20
Matches are distributed among these distances:
12 12 0.75
14 4 0.25
ACGTcount: A:0.38, C:0.12, G:0.34, T:0.16
Consensus pattern (14 bp):
TAAGGGGGCCAATA
Found at i:16985585 original size:12 final size:12
Alignment explanation
Indices: 16985568--16985598 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
16985558 CTCTTTAAGG
16985568 GGGCCAATATAA
1 GGGCCAATATAA
16985580 GGGCCAATATAA
1 GGGCCAATATAA
16985592 GGGCCAA
1 GGGCCAA
16985599 GTACCAGCAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.39, C:0.19, G:0.29, T:0.13
Consensus pattern (12 bp):
GGGCCAATATAA
Found at i:16986132 original size:26 final size:26
Alignment explanation
Indices: 16986096--16986155 Score: 88
Period size: 26 Copynumber: 2.4 Consensus size: 26
16986086 CCTCGGTCTG
16986096 ATCCG-AT-CTTAGACTGGGAATGAA
1 ATCCGTATGCTTAGACTGGGAATGAA
*
16986120 ATCCTTATGCTTAGACTGGGAATGAA
1 ATCCGTATGCTTAGACTGGGAATGAA
*
16986146 CTCCGTATGC
1 ATCCGTATGC
16986156 CTAACTCAAC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
24 4 0.13
25 2 0.06
26 25 0.81
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.28
Consensus pattern (26 bp):
ATCCGTATGCTTAGACTGGGAATGAA
Found at i:16987146 original size:343 final size:343
Alignment explanation
Indices: 16986551--16987209 Score: 772
Period size: 343 Copynumber: 1.9 Consensus size: 343
16986541 GTTGAGCCGG
* * * * **
16986551 TCGGAGAGGCATAATGCGTAACCCGAGGATCGACCCGATCCCCCTCTGCGTGCTGCTGGTCCCGC
1 TCGGAGAGGCAGAATGCGCAACCCGAGGATCGACCCGATCCCCCTCTGCATGCTACTGGTCCAAC
* * ** *
16986616 TGCCACAACCCTCAGTCTAGCTAGGGCTTAGACAAGGAATTTACTCCCTAAGCCTAAGCCAACCC
66 TACCACAACCCTCAGTCTAGATAGGGCTTAGACAAGGAATGAAATCCCTAAGCCTAAGCCAACCC
* ** * *
16986681 ATGAAACGGGCGTTTGGGAGTTCAGTCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCC
131 ACGAAACGGGCGTGCGGGAGCTCAGCCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCC
* * ** *
16986746 AGTCCCCCCTGCGTGCTACCAATCCTGCTGCCGTAACCCTCGATCTGATTCGATCTTAGACTAGG
196 AGTCCCCCCTACGTGCTACCAATCCTGCTCCCCCAACCCTCGATCTGATTCGATCTTAAACTAGG
* *
16986811 AATGAACTCCATGTGCTTAGAC-ATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAATGAA
261 AATGAACTCCATATGCTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAA
16986875 CATGCAGGTGCTCAACCGA
325 CATGCAGGTGCTCAACCGA
* *
16986894 TCGGAGAGGCAGAATGCGCAAGCCGGGGA-CTGACCCGATCCCCCTCTGCATGCTAAC-GGTCCA
1 TCGGAGAGGCAGAATGCGCAACCCGAGGATC-GACCCGATCCCCCTCTGCATGCT-ACTGGTCCA
* * * ** *
16986957 ACTACCACAACCGTCAGTC-CGATTGGAGCTTAGACTTGGAATGAAATCCCTATGCCTAAGCCAA
64 ACTACCACAACCCTCAGTCTAGATAGG-GCTTAGACAAGGAATGAAATCCCTAAGCCTAAGCCAA
* * *
16987021 CCCACGAAACGGGCGTGCGGGCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATC-A
128 CCCACGAAACGGGCGTGCGGGAGCTCAGCCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGA
* * * * ** * * * * * *
16987085 GCTCGGTCCCTCCTATGTGCTGTCGATCTTGCTCCCCCAGCCCTCGGTTTG-GTCTGATCTTAAA
193 -CCCAGTCCCCCCTACGTGCTACCAATCCTGCTCCCCCAACCCTCGATCTGATTC-GATCTTAAA
* * * *
16987149 CTAGGAATGAACTTCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAACCCAC
256 CTAGGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCAC
16987210 GAAACGTGCG
Statistics
Matches: 260, Mismatches: 50, Indels: 12
0.81 0.16 0.04
Matches are distributed among these distances:
342 8 0.03
343 250 0.96
344 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.20
Consensus pattern (343 bp):
TCGGAGAGGCAGAATGCGCAACCCGAGGATCGACCCGATCCCCCTCTGCATGCTACTGGTCCAAC
TACCACAACCCTCAGTCTAGATAGGGCTTAGACAAGGAATGAAATCCCTAAGCCTAAGCCAACCC
ACGAAACGGGCGTGCGGGAGCTCAGCCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGACCC
AGTCCCCCCTACGTGCTACCAATCCTGCTCCCCCAACCCTCGATCTGATTCGATCTTAAACTAGG
AATGAACTCCATATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAAC
ATGCAGGTGCTCAACCGA
Found at i:16987179 original size:26 final size:26
Alignment explanation
Indices: 16987143--16987195 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16987133 TTGGTCTGAT
*
16987143 CTTAAACTAGGAATGAACTTCGTATG
1 CTTAAACTAGGAATGAACTCCGTATG
* *
16987169 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAAACTAGGAATGAACTCCGTATG
16987195 C
1 C
16987196 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAAACTAGGAATGAACTCCGTATG
Found at i:16987904 original size:26 final size:26
Alignment explanation
Indices: 16987865--16987917 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16987855 GGCTCAAAAT
16987865 CTTAGACTGAGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
16987891 CTTAGACATG-GAATGAACTCCATATG
1 CTTAGAC-TGAGAATGAACTCCATATG
16987917 C
1 C
16987918 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:16990153 original size:26 final size:26
Alignment explanation
Indices: 16990115--16990167 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
16990105 GGCTCAAACC
16990115 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
16990141 CTTAGACAT-GGAATGAACTCTGTATG
1 CTTAGAC-TGGGAATGAACTCTGTATG
16990167 C
1 C
16990168 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:16990499 original size:26 final size:26
Alignment explanation
Indices: 16990459--16990510 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
16990449 TGGTCTGATT
*
16990459 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCCTATGC
*
16990485 TTAGACTGGGGATGAACTCCCTATGC
1 TTAGACTGGGAATGAACTCCCTATGC
16990511 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCCTATGC
Found at i:16990697 original size:26 final size:26
Alignment explanation
Indices: 16990668--16990720 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16990658 CCGGTTCGAT
16990668 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
* *
16990694 CTTAGACATGGAATTAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
16990720 C
1 C
16990721 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:16990903 original size:26 final size:26
Alignment explanation
Indices: 16990852--16990904 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16990842 TCGGTCTGAT
* *
16990852 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
16990878 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
16990904 C
1 C
16990905 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:16991423 original size:26 final size:26
Alignment explanation
Indices: 16991387--16991439 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16991377 CTGATCTGAT
16991387 CTTAGACTGGGAATAAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
* * *
16991413 CTTAGATTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCATATG
16991439 C
1 C
16991440 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:16992164 original size:26 final size:26
Alignment explanation
Indices: 16992135--16992187 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16992125 CTGATCCTAT
*
16992135 CTTAGACAGGGAATGAACTCTGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
* *
16992161 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
16992187 C
1 C
16992188 CTAAGCCAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:16992762 original size:159 final size:156
Alignment explanation
Indices: 16992370--16992790 Score: 396
Period size: 159 Copynumber: 2.7 Consensus size: 156
16992360 AACTCAGTAT
* * * * **
16992370 GCTTTGACATGAAATAAACTCCGTATGCCTAAGCCAACCCATAAAATGAACGTACGGGCGTTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATG-ACGTACGGGCGTTCAG
* ** ** * *
16992435 CCAATTGGAGAGGCAGAATGCATAAGTTGGGGATCAGCCTAGTCCCCCCTGTGTGTTGTCAATCC
65 CCGA-TGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCTAGTCCCCCCTGTGTGCTGCCAATCC
* *
16992500 TGCTATCGCAACCCTTGGTACGGTCCAA
129 TGCTACCACAACCCTTGGTACGGTCCAA
* * * ** * * * **
16992528 TCTTAGAC-TGGGAATGAACTACATATGCCTAAGTCAATGCACGAAATGAGCGTGCGGGTGCTGT
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGA-CGTACGGGCGTTCA
* * * * *
16992592 GCCGATCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCTGGTCCCCATCTGTGTGCTGCCAGT
64 GCCGAT-GGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCTAGTCCCC-CCTGTGTGCTGCCAAT
* ***
16992657 CCTGCTACCACAACCCTTGGTCCGG-CTGGG
127 CCTGCTACCACAACCCTTGGTACGGTC-CAA
* *
16992687 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATAGACCTACGGGCGTTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAAT-GACGTACGGGCGTTCAG
* * *
16992752 CCTGCTGGAGAGGCAGAATGCGCAAGCCAGAGATCAGCC
65 CC-GATGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCC
16992791 CGATCCCTCC
Statistics
Matches: 204, Mismatches: 51, Indels: 15
0.76 0.19 0.06
Matches are distributed among these distances:
157 3 0.01
158 83 0.41
159 113 0.55
160 5 0.02
ACGTcount: A:0.26, C:0.27, G:0.27, T:0.21
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATGACGTACGGGCGTTCAGC
CGATGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCTAGTCCCCCCTGTGTGCTGCCAATCCTG
CTACCACAACCCTTGGTACGGTCCAA
Found at i:16992887 original size:26 final size:26
Alignment explanation
Indices: 16992846--16992897 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
16992836 CCATTCCAAT
* *
16992846 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAAATCCGTATG
* *
16992872 CTTAGACTGGGGATGAAATCCGTATG
1 CTTAGACTAGGAATGAAATCCGTATG
16992898 GCTAAGTCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAAATCCGTATG
Found at i:16993579 original size:26 final size:26
Alignment explanation
Indices: 16993541--16993593 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
16993531 GGCTCAAACT
*
16993541 CTTAGACTAGGAATGAAATCTGTATG
1 CTTAGACTAGGAATGAAATCCGTATG
*
16993567 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAAATCCGTATG
16993593 C
1 C
16993594 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAAATCCGTATG
Found at i:16994040 original size:890 final size:881
Alignment explanation
Indices: 16992687--16994309 Score: 2432
Period size: 890 Copynumber: 1.8 Consensus size: 881
16992677 TCCGGCTGGG
* *
16992687 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAATAGACCTACGGGCGTTCAA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAATAGACCTACGGGCGCTCAA
*
16992752 CCTGCTGGAGAGGCAGAATGCGCAAGCCAGAGATCAGCCCGATCCCTCCTGCGTGCTTTCGATCC
66 CCTGATGGAGAGGCAGAATGCGCAAGCCAGAGATCAGCCCGATCCCTCCTGCGTGCTTTCGATCC
* * *
16992817 TGCTGTCACAACCCTCGATCCATTCCAATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTGG
131 TGCTGTCACAACCCTCAATCCAGTCCAATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTAG
* * * * * * * *
16992882 GGATGAAATCCGTATGGCTAAGTCAATCGATGAAACGAGCGTGCGGACGCTCAGCCGACCAGAGA
196 GGATGAAATCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGAACGCTCAGCCAACCAGAAA
* * * *
16992947 GGCAGGATGTGCAAGCCAGGGATCGAACGGTGGTAGGTGGGTTCAAGCACATCTTCATATTTCTG
261 GGCAGGATGCGCAAGCCAGAGATCGAACGGTGATAGGTGGGTTCAAGCACATCTTCATATTTATG
16993012 CCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAAAATGGTCCCCTAAGCCTTCATGTGAAG
326 CCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAAAATGGTCCCCTAAGCCTTCATGTGAAG
** **
16993077 TTTCGTGGCAAGACGAACCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTTGGGATT
391 TTTCGTGGCAAGACGAACCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCAGGATT
* * *
16993142 TTTTAAAA-TTTTTTAGAAAGAGTTTTGTCCCCAAATTTGATAGAGGTGATCCTTGTATTTTTGT
456 TTTTAAAATTTTTTTAAAAAGAGTTTTCTCCCCAAATTTGATAGAGGAGATCCTTGTATTTTTGT
* * *
16993206 GGGCATGCACAAAAAAATTCATCAAAAAATTTGAAATGGAGAAGATTTTGTGACCATTTG-AAAA
521 GGGCATGCACAAAAAAATTCAGCAAAAAACTTGAAATGGACAAGATTTTGTGACCATTTGAAAAA
* *
16993270 AGTGTCCCCATTTCAGACACTTTAATTGCCACTGGCAGCAAACCTATAAAATCTGAAATGCTCTT
586 AGTGTCCCCATTTCAGACACTTTAATGGCCACTGGCAGCAAACCTATAAAATCTCAAATGCTCTT
* *
16993335 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTACCAG
651 TAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTACCAA
16993400 CACCCATCCCACATCATGCGCGCACACCTCTCGACCCCCCAATCGTCGAGACCTCCAATGCCATC
716 CACCCATCCCACATCATGCGCGCACACCTCTCGACCCCCCAATCGTCGAGACCTCCAATGCCATC
16993465 GGTGATGGTGCCCTGGGCGAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCTTGTGCACCG
781 GGTGATGGTGCCCTGGGCGAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCTTGTGCACCG
16993530 TGGCTCAAACTCTTAGACTAGGAATGAAATCTGTAT
846 TGGCTCAAACTCTTAGACTAGGAATGAAATCTGTAT
* * *
16993566 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAAT-GAGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAATAGA-CCTACGGGCGCTCA
* * * *
16993630 GCC-GATCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCC-CCTGCGTGCTGCTGAT
65 ACCTGAT-GGAGAGGCAGAATGCGCAAGCCAGAGATCAGCCCGATCCCTCCTGC--G-TGCT--T
* * * ** * *
16993693 ACTGCTGCTAGTCCTGCT-TCTGCATCCCTCAATCCGGTCTGATCTTAGACTGGGAATGAACTTT
124 --T-C-G--A-TCCTGCTGTC-ACAACCCTCAATCCAGTCCAATCTTAGACTAGGAATGAACTCT
* * *
16993757 GTATGCTTAGACTAGTGATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGAACGC
181 GTATGCTTAGACTAGGGATGAAATCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGAACGC
* **
16993822 TCAGTCAACCAGAAAGGCAGGATGCGCAAGTTAGAGATCGAACGGGTGATAGGTGGGTTCAAGCA
246 TCAGCCAACCAGAAAGGCAGGATGCGCAAGCCAGAGATCGAAC-GGTGATAGGTGGGTTCAAGCA
* * *
16993887 CATCTTCATATTTATG-CATTCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
310 CATCTTCATATTTATGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAAAATGGTCCCCT
* * *
16993951 AAGCCTTCATGTGAAGTTTCGTGGCATGACGATCCGTTTTCTATTTTTCACGATTTTCAAAATTT
375 AAGCCTTCATGTGAAGTTTCGTGGCAAGACGAACCGTTTTCTATTTTTCACGATTTTCAAAACTT
** *
16994016 TTTGCGGTTCAGGATTTTTTAAAATTTTTTTAAAAAGCTTTTTCTCCCCAAATTTGGTAGAGGAG
440 TTTGCGGTTCAGGATTTTTTAAAATTTTTTTAAAAAGAGTTTTCTCCCCAAATTTGATAGAGGAG
* * * **
16994081 ATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTTGATGTGGACAAGATTTT
505 ATCCTTGTATTTTTGTGGGCATGCACAAAAAAATTCAGCAAAAAACTTGAAATGGACAAGATTTT
* *
16994146 GTGACCGTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAA
570 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCCACTGGCAGCAAACCTATAA
*
16994211 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGGCCAATAT
635 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGACCAATAT
16994276 AAGGGCCAAGTACCAACACCCATCCCACATCATG
700 AAGGGCCAAGTACCAACACCCATCCCACATCATG
16994310 TGCACGCACC
Statistics
Matches: 657, Mismatches: 69, Indels: 23
0.88 0.09 0.03
Matches are distributed among these distances:
878 9 0.01
879 95 0.14
880 1 0.00
881 4 0.01
883 1 0.00
885 1 0.00
886 1 0.00
887 1 0.00
889 3 0.00
890 259 0.39
891 136 0.21
892 146 0.22
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (881 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAATAGACCTACGGGCGCTCAA
CCTGATGGAGAGGCAGAATGCGCAAGCCAGAGATCAGCCCGATCCCTCCTGCGTGCTTTCGATCC
TGCTGTCACAACCCTCAATCCAGTCCAATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTAG
GGATGAAATCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGAACGCTCAGCCAACCAGAAA
GGCAGGATGCGCAAGCCAGAGATCGAACGGTGATAGGTGGGTTCAAGCACATCTTCATATTTATG
CCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAAAATGGTCCCCTAAGCCTTCATGTGAAG
TTTCGTGGCAAGACGAACCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCAGGATT
TTTTAAAATTTTTTTAAAAAGAGTTTTCTCCCCAAATTTGATAGAGGAGATCCTTGTATTTTTGT
GGGCATGCACAAAAAAATTCAGCAAAAAACTTGAAATGGACAAGATTTTGTGACCATTTGAAAAA
AGTGTCCCCATTTCAGACACTTTAATGGCCACTGGCAGCAAACCTATAAAATCTCAAATGCTCTT
TAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTACCAA
CACCCATCCCACATCATGCGCGCACACCTCTCGACCCCCCAATCGTCGAGACCTCCAATGCCATC
GGTGATGGTGCCCTGGGCGAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCTTGTGCACCG
TGGCTCAAACTCTTAGACTAGGAATGAAATCTGTAT
Found at i:16995044 original size:26 final size:26
Alignment explanation
Indices: 16995008--16995060 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
16994998 TTGGTCTGAT
*
16995008 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
16995034 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16995060 C
1 C
16995061 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:16995144 original size:209 final size:209
Alignment explanation
Indices: 16994779--16995320 Score: 712
Period size: 209 Copynumber: 2.6 Consensus size: 209
16994769 CTGCTGTTGT
* * * * *
16994779 AACCCTCGGTCCGATCTGATCTTAAATTGGGAATGAACTTCGTATGCTTAGACTGGGGATAAACT
1 AACCCTCAGTCTGATCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGGATGAACT
* * **
16994844 TCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGGCAGTCAAAGAGGCCGGTCG
66 TCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGTCGGAGAGGCCGGTCG
* * * * * * * * *
16994909 GAGAGGCAAAATGTGCAAGTCGGGGATCGACCCAGTCTCTCC-TATGTGCTATCAATCTTGGTGC
131 AAAAGGCAAAATGCGCAAGCCGGGGATCGACCCAGTC-CCCCTTACGTGCTATCAATCCTGCTAC
*
16994973 TGGTCTTGCTGCCGC
195 TGCTCTTGCTGCCGC
* *
16994988 AACCCTC-GATTTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGGATGAAC
1 AACCCTCAG-TCTGATCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGGATGAAC
* * * *
16995052 TCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCGCTCAACCAGTCGGAGAGGCCGGTC
65 TTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGTCGGAGAGGCCGGTC
* *
16995117 GAAAAGGCAAAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTTACGTGCTGTCAATCCTGCTAC
130 GAAAAGGCAAAATGCGCAAGCCGGGGATCGACCCAGTCCCCCTTACGTGCTATCAATCCTGCTAC
*
16995182 TGCTCTTGCTGCTGC
195 TGCTCTTGCTGCCGC
* * * *
16995197 AACCCTCAGTCTGATTTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-TGAATGAAC
1 AACCCTCAGTCTGATCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGAC-TGGGGATGAAC
* * * *
16995261 TTCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAGTCGGTCGGAGAGGC
65 TTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGTCGGAGAGGC
16995321 AGAATGCACA
Statistics
Matches: 288, Mismatches: 41, Indels: 8
0.85 0.12 0.02
Matches are distributed among these distances:
208 4 0.01
209 282 0.98
210 2 0.01
ACGTcount: A:0.24, C:0.26, G:0.27, T:0.23
Consensus pattern (209 bp):
AACCCTCAGTCTGATCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGGATGAACT
TCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGTCGGAGAGGCCGGTCG
AAAAGGCAAAATGCGCAAGCCGGGGATCGACCCAGTCCCCCTTACGTGCTATCAATCCTGCTACT
GCTCTTGCTGCCGC
Found at i:16998337 original size:23 final size:23
Alignment explanation
Indices: 16998307--16998355 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
16998297 ATGGGGTCCT
16998307 TCATAATAGCATTCCTCAATCCC
1 TCATAATAGCATTCCTCAATCCC
*
16998330 TCATAATAGCATTCTTCAATCCC
1 TCATAATAGCATTCCTCAATCCC
16998353 TCA
1 TCA
16998356 AAGGCCTATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.31, C:0.33, G:0.04, T:0.33
Consensus pattern (23 bp):
TCATAATAGCATTCCTCAATCCC
Found at i:17002587 original size:159 final size:159
Alignment explanation
Indices: 17002389--17002705 Score: 417
Period size: 159 Copynumber: 2.0 Consensus size: 159
17002379 CAACCGGTCG
* * *
17002389 GAGAGGTAGAATGCGCAAGCTGGGGATCGGCCCGGTCCCCCCTACGTGCTATCGA-TCCTACTGC
1 GAGAGGCAGAATGCGCAAGCTAGGGATCGGCCCGATCCCCCCTACGTGCTAT-GAGTCCTACTGC
* * * *
17002453 CGCAACCCTC-AGTCTGGTCTGATCTTAGATTGGGAATAAACTCCGTACGCTTAGACAT-GGAAT
65 CGCAACCCTCGA-TCGGGTCTAATCTTAGACTGGGAATAAACTCCGTACGCCTAGA-ATGGGAAT
17002516 GAACTCCGTATGCCTAAGCCAACCCACGAAAT
128 GAACTCCGTATGCCTAAGCCAACCCACGAAAT
* * *
17002548 GAGAGGCAGAATGCGCAAGCTAGGGA-CTGGCCCGATCCCCCCTACGTGCTGTTAGTCCTATTGC
1 GAGAGGCAGAATGCGCAAGCTAGGGATC-GGCCCGATCCCCCCTACGTGCTATGAGTCCTACTGC
* * * *
17002612 CGCAACCCTCGATCGGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAGATTGGGGATGA
65 CGCAACCCTCGATCGGGTCTAATCTTAGACTGGGAATAAACTCCGTACGCCTAGAATGGGAATGA
* * *
17002677 ACTTCGTATGCCTAAGTCAACCCATGAAA
130 ACTCCGTATGCCTAAGCCAACCCACGAAA
17002706 CGAGCGTACG
Statistics
Matches: 137, Mismatches: 17, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
158 3 0.02
159 133 0.97
160 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (159 bp):
GAGAGGCAGAATGCGCAAGCTAGGGATCGGCCCGATCCCCCCTACGTGCTATGAGTCCTACTGCC
GCAACCCTCGATCGGGTCTAATCTTAGACTGGGAATAAACTCCGTACGCCTAGAATGGGAATGAA
CTCCGTATGCCTAAGCCAACCCACGAAAT
Found at i:17002676 original size:26 final size:26
Alignment explanation
Indices: 17002637--17002690 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
17002627 GGTCTAATCT
17002637 TAGACTGGGAATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
* * *
17002663 TAGATTGGGGATGAACTTCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
17002689 TA
1 TA
17002691 AGTCAACCCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCC
Found at i:17003949 original size:26 final size:26
Alignment explanation
Indices: 17003911--17003963 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17003901 GGTTCAAACT
*
17003911 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17003937 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
17003963 C
1 C
17003964 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17004298 original size:26 final size:25
Alignment explanation
Indices: 17004262--17004313 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
17004252 CCAGTCTGAT
17004262 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTC-TATG
*
17004288 CTTAGACTGGGGATGAACTTCTATG
1 CTTAGACTGGGAATGAACTTCTATG
17004313 C
1 C
17004314 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 5 0.20
26 20 0.80
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (25 bp):
CTTAGACTGGGAATGAACTTCTATG
Found at i:17005856 original size:26 final size:26
Alignment explanation
Indices: 17005827--17005879 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17005817 CCGGTTCGAT
*
17005827 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATAAACTCCGTATG
*
17005853 CTTAGACATGGAATAAACTCTGTATG
1 CTTAGACATGGAATAAACTCCGTATG
17005879 C
1 C
17005880 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCCGTATG
Found at i:17005996 original size:184 final size:184
Alignment explanation
Indices: 17005668--17006036 Score: 449
Period size: 184 Copynumber: 2.0 Consensus size: 184
17005658 TCCGGCTGGG
* * *
17005668 GCTTAGACTTGGAATGAACTCCTTATGCCTAAGCTAACCCATGAAACAGGCGTGCGGGCGCTCAA
1 GCTTAGACATGGAATAAACTCCTTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGCGCTCAA
* * * * * *
17005733 CCGACCGGAGAGGTAGAATGCGTAAATCGAGGATCGGCCCGATCCCCCCTGCGTGCTATCGATCC
66 CCGACCGGAGAGGCAGAATGCGCAAACCGAGGATCGACCCGATCCCCCCTACATGCTATCGATCC
* * * *
17005798 TACTGTCACAACCCTC-ATTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTAT
131 TACTATCACAACCCTCGA-TCCGGTCCAATCATAGACTGGGAATGAACTCCGTAT
*
17005852 GCTTAGACATGGAATAAACT-CTGTATGCCTAAGCCAACCCATGAAA-TGAGCGTGCGGGCGCTC
1 GCTTAGACATGGAATAAACTCCT-TATGCCTAAGCCAACCCATGAAACAG-GCGTGCGGGCGCTC
* * * * * * *
17005915 AGCCGATCGGAGAGGCAGAATGCGCAAGCC-AGGGATCGACCTGGTCCCCCCTACATGTTGTCGA
64 AACCGACCGGAGAGGCAGAATGCGCAAACCGA-GGATCGACCCGATCCCCCCTACATGCTATCGA
* * * *
17005979 TCTTGCTATCGCAACCCTCGATCTGGTCCAATCATAGACTGGGAATGAACTCCGTAT
128 TCCTACTATCACAACCCTCGATCCGGTCCAATCATAGACTGGGAATGAACTCCGTAT
17006036 G
1 G
17006037 TGCGCACACC
Statistics
Matches: 156, Mismatches: 25, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
183 4 0.03
184 151 0.97
185 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (184 bp):
GCTTAGACATGGAATAAACTCCTTATGCCTAAGCCAACCCATGAAACAGGCGTGCGGGCGCTCAA
CCGACCGGAGAGGCAGAATGCGCAAACCGAGGATCGACCCGATCCCCCCTACATGCTATCGATCC
TACTATCACAACCCTCGATCCGGTCCAATCATAGACTGGGAATGAACTCCGTAT
Found at i:17006774 original size:159 final size:157
Alignment explanation
Indices: 17006221--17006824 Score: 463
Period size: 159 Copynumber: 3.8 Consensus size: 157
17006211 AACTCTGTAT
* * * * * *
17006221 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACTAGCGTGCAGGCACTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** * * *
17006286 CTGGCC-GAAAAGGCAGAATGTGCAAGCCGAGGATCGACTCAGTTCCCTTCTACGTGCTGCC-AG
66 CCAGCCAG-AGAGGCAGAATGTGCAAGCCGAGGATCGAC-CCGTTCCCCTCTACGTGCTGCCGA-
* * * *
17006349 TCCCACTGCCAGAACCATCGGTCCAGTTGGG
128 TCCCGCTGCCACAACCCTCGGTCC-GATGGG
* * * *
17006380 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACTCATGAAA-GAAGCGTGCGGGCGTTCA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACG-AGCGTGCGGGCGCTCA
* * ** * * * * * *** **
17006444 GCCTGCCGGAGAGG-AGAATGCACAATCCGAGGATCGGCCTGATCCCTCCCGGTGTGCTGTTGAT
65 GCCAGCCAGAGAGGCAGAATGTGCAAGCCGAGGATCGACCCGTTCCC-CTCTACGTGCTGCCGAT
* * ** * *
17006508 CCTGCTACTGCAACCCTCAGTCCGGTAT-GA
129 CCCGCTGCCACAACCCTCGGTCC-G-ATGGG
* * * ** * * *
17006538 TCTTAGAC-TGGGAATGAACTCCGTCA-ACCTAAGTTAACCCACGAAACGACCGTTCGGGCGCTG
1 GCTTAGACAT-GGAATGAACTCCCT-ATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * * *
17006601 AGCCGATCGA-AGAGGCATAATGTGCAAGCC-AGGGATCGGCCCGTTCCCCCTCTGCGTGCTGCC
64 AGCC-AGCCAGAGAGGCAGAATGTGCAAGCCGA-GGATCGACCCGTT-CCCCTCTACGTGCTGCC
*
17006664 GATCCCGCTGCCACAACCCTTGGTCCGACTGGG
126 GATCCCGCTGCCACAACCCTCGGTCCGA-TGGG
* * *
17006697 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGACACGGGCGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
17006762 CCAGCCAGAGAGGTAGAAT-TCGCAAGCCGGGGATCGACCCGGTCCCCTCTACGTGCTGTCGAT
66 CCAGCCAGAGAGGCAGAATGT-GCAAGCCGAGGATCGACCCGTTCCCCTCTACGTGCTGCCGAT
17006825 GTTGCTACCG
Statistics
Matches: 338, Mismatches: 88, Indels: 39
0.73 0.19 0.08
Matches are distributed among these distances:
157 8 0.02
158 127 0.38
159 198 0.59
160 5 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCAGCCAGAGAGGCAGAATGTGCAAGCCGAGGATCGACCCGTTCCCCTCTACGTGCTGCCGATCC
CGCTGCCACAACCCTCGGTCCGATGGG
Found at i:17006820 original size:317 final size:316
Alignment explanation
Indices: 17006291--17006875 Score: 716
Period size: 317 Copynumber: 1.8 Consensus size: 316
17006281 CTCAACTGGC
*
17006291 CGAAAAGGCAGAATGTGCAAGCCGAGGATCGACTCAGTTCCCTTCTACGTGCTGCCAGTCCCACT
1 CGAAAAGGCAGAATGTGCAAGCCGAGGATCGACTCAGTTCCCCTCTACGTGCTGCCAGTCCCACT
* * * *
17006356 GCCAGAACCATCGGTCCAGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACTCA
66 GCCACAACCATCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
* * * * * * * *
17006421 TGAAAGAAGCGTGCGGGCGTTCAGCCTGCCGGAGAGGAGAATGCACAATCCGAGGATCGGCCTGA
131 CGAAAGAAGCGTACGGGCGCTCAGCCAGCCAGAGAGGAGAATGCACAAGCCGAGGATCGACCCGA
** * *
17006486 TCCCTCCCGGTGTGCTGTTGATCCTGCTACTGCAACCCTCAGTCCGGTAT-GATCTTAGACTGGG
196 TCCCTCCCGACGTGCTGTCGATCCTGCTACCGCAACCCTCAGT-CGG-ATCGATCTTAGACTGGG
17006550 AATGAACTCCGTCAACCTAAGTTAACCCACGAAACGACCGTTCGGGCGCTGAGCCGAT
259 AATGAACTCCGTCAACCTAAGTTAACCCACGAAACGACCGTTCGGGCGCTGAGCCGAT
* * * * *
17006608 CGAAGAGGCATAATGTGCAAGCC-AGGGATCGGC-CCGTTCCCCCTCTGCGTGCTGCC-GATCCC
1 CGAAAAGGCAGAATGTGCAAGCCGA-GGATCGACTCAGTT-CCCCTCTACGTGCTGCCAG-TCCC
* * *
17006670 GCTGCCACAACCCTTGGTCC-GACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
63 ACTGCCACAACCATCGGTCCAG-CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * * *
17006734 CCCACGACACG-GGCGTACGGGCGCTCAGCCAGCCAGAGAGGTAGAATTCGCAAGCCGGGGATCG
127 CCCACGA-AAGAAGCGTACGGGCGCTCAGCCAGCCAGAGAGG-AGAATGCACAAGCCGAGGATCG
* * * ** *
17006798 ACCCGGTCCC-CTCTACGTGCTGTCGATGTTGCTACCGTAACCCTCAGTCGGATCCGATCTTAGA
190 ACCCGATCCCTCCCGACGTGCTGTCGATCCTGCTACCGCAACCCTCAGTCGGAT-CGATCTTAGA
17006862 CTGGGAATGAACTC
254 CTGGGAATGAACTC
17006876 TATATGCTTA
Statistics
Matches: 224, Mismatches: 36, Indels: 16
0.81 0.13 0.06
Matches are distributed among these distances:
315 2 0.01
316 10 0.04
317 185 0.83
318 27 0.12
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (316 bp):
CGAAAAGGCAGAATGTGCAAGCCGAGGATCGACTCAGTTCCCCTCTACGTGCTGCCAGTCCCACT
GCCACAACCATCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA
CGAAAGAAGCGTACGGGCGCTCAGCCAGCCAGAGAGGAGAATGCACAAGCCGAGGATCGACCCGA
TCCCTCCCGACGTGCTGTCGATCCTGCTACCGCAACCCTCAGTCGGATCGATCTTAGACTGGGAA
TGAACTCCGTCAACCTAAGTTAACCCACGAAACGACCGTTCGGGCGCTGAGCCGAT
Found at i:17007402 original size:12 final size:12
Alignment explanation
Indices: 17007385--17007417 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
17007375 ATGAGGGATA
17007385 GGGGGCCAATAT
1 GGGGGCCAATAT
17007397 GGGGGCCAATAT
1 GGGGGCCAATAT
*
17007409 GAGGGCCAA
1 GGGGGCCAA
17007418 GTACCAGCAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.27, C:0.18, G:0.42, T:0.12
Consensus pattern (12 bp):
GGGGGCCAATAT
Found at i:17008050 original size:26 final size:26
Alignment explanation
Indices: 17008021--17008073 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17008011 CCGATCTAGT
17008021 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
17008047 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
17008073 C
1 C
17008074 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:17008781 original size:26 final size:26
Alignment explanation
Indices: 17008743--17008795 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17008733 GGCTCAAACT
* *
17008743 CTTAGACTGGGAATGAATTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17008769 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
17008795 C
1 C
17008796 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17009115 original size:26 final size:26
Alignment explanation
Indices: 17009086--17009138 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
17009076 CCGGTCTGAT
17009086 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
17009112 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17009138 C
1 C
17009139 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17009312 original size:26 final size:26
Alignment explanation
Indices: 17009283--17009335 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17009273 CTGGTCTAAT
17009283 CTTAGAC-TAGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCTGTATG
17009309 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCTGTATG
17009335 C
1 C
17009336 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTGTATG
Found at i:17009667 original size:26 final size:26
Alignment explanation
Indices: 17009626--17009681 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
17009616 CTGATCTGAT
17009626 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
17009652 CTTAGACTGAGG-ATGAACTCCGTATG
1 CTTAGACTG-GGAATGAACTCCGTATG
17009678 CTTA
1 CTTA
17009682 AGTCAACCCA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 27 0.93
27 2 0.07
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:17010388 original size:26 final size:26
Alignment explanation
Indices: 17010337--17010389 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17010327 GGCTCAAACT
*
17010337 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
17010363 CTTAGACAT-GGAATGAACTTCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
17010389 C
1 C
17010390 CTAAGCCAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:17010688 original size:26 final size:26
Alignment explanation
Indices: 17010659--17010711 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
17010649 CCGATCCAAT
17010659 CTTAGACT-GGGACTGAACTCCGTATG
1 CTTAGACTGGGGA-TGAACTCCGTATG
*
17010685 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
17010711 C
1 C
17010712 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:17010908 original size:26 final size:26
Alignment explanation
Indices: 17010856--17010908 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
17010846 CTGATCTCAT
*
17010856 CTTAGACTGGGAATGAACTCTGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
17010882 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGCATG
17010908 C
1 C
17010909 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:17010972 original size:197 final size:196
Alignment explanation
Indices: 17010636--17011145 Score: 532
Period size: 197 Copynumber: 2.7 Consensus size: 196
17010626 ATCCTGTTGT
* * *
17010636 CGCAACCCTTGGTCCGATCCAATCTTAGACTGGGACTGAACTCCGTATGCTTAGACTGGGGATGA
1 CGCAACCCTTGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGAATGA
* * * *
17010701 ACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGTACGGGCGTTCAACCGACCAGAGAGGTAGA
66 ACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTACGGGCGTTCAACCGACCAGAGAGGTAGA
*
17010766 ATACGCAAG-CAATGGATCGGCCCGATCCCCTCCTACGTGCTATCGATCCTGCTGCTGGTCCTAC
131 ATACGCAAGCCAA-GGATCGACCCGATCCCC-CCTACGTGCTATCGATCCTGCTGCTGGTCCTAC
17010830 TGC
194 TGC
* *
17010833 CGCAACCCTTGGTCTGATCTC-ATCTTAGACTGGGAATGAACTCTGCATGCTTAGACAT-GGAAT
1 CGCAACCCTTGGTCCGATC-CAATCTTAGACTGGGAATGAACTCCGCATGCTTAGAC-TGGGAAT
* * **
17010896 GAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGTGCGTTCAACCGGTC-GAAGAGGT
64 GAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTACGGGCGTTCAACCGACCAG-AGAGGT
* * * *
17010960 AGAATGCGCAAGCCAAGGATCGACCTGGTCCCCCCTAC--G---T-G---CTG-T--TGATCCTA
128 AGAATACGCAAGCCAAGGATCGACCCGATCCCCCCTACGTGCTATCGATCCTGCTGCTGGTCCTA
*
17011013 CTGT
193 CTGC
* * * * * * * *
17011017 CGCAACCCTCGG-CTCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTACATTGGGGATG
1 CGCAACCCTTGGTC-CGATCCAATCTTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGAATG
* ** * * * **
17011081 AACTCCGTATGCCTAAGTCAACCCACGAAAGGAGCGTGCGGACGTTCAGTCGACCAGAGAGGTAG
65 AACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTACGGGCGTTCAACCGACCAGAGAGGTAG
17011146 GATGCACAAG
Statistics
Matches: 269, Mismatches: 36, Indels: 29
0.81 0.11 0.09
Matches are distributed among these distances:
183 3 0.01
184 114 0.42
185 1 0.00
186 1 0.00
187 3 0.01
190 1 0.00
191 1 0.00
194 1 0.00
196 6 0.02
197 133 0.49
198 5 0.02
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.22
Consensus pattern (196 bp):
CGCAACCCTTGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGAATGA
ACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTACGGGCGTTCAACCGACCAGAGAGGTAGA
ATACGCAAGCCAAGGATCGACCCGATCCCCCCTACGTGCTATCGATCCTGCTGCTGGTCCTACTG
C
Found at i:17011166 original size:184 final size:183
Alignment explanation
Indices: 17010815--17011155 Score: 431
Period size: 184 Copynumber: 1.9 Consensus size: 183
17010805 CTATCGATCC
* *
17010815 TGCTGCTGGTCCTACTGCCGCAACCCTTGGTCTGATCTCATCTTAGACTGGGAATGAACTCTGCA
1 TGCTGCTGATCCTACTGCCGCAACCCTCGGTCTGATCTCATCTTAGACTGGGAATGAACTCTGCA
*
17010880 TGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGTGCGTTCA
66 TGCTTA-ACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGTGCGTTCA
** *
17010945 ACCGGTCGAAGAGGTAGAATGCGCAAGCCAAGGATCGACCTGGTCCCCCCTACG
130 ACCGACCGAAGAGGTAGAATGCACAAGCCAAGGATCGACCTGGTCCCCCCTACG
* * *
17010999 TGCTGTTGATCCTACTGTCGCAACCCTCGG-CTCGGTC-CGATCTTAGACTGGGAATGAACTCTG
1 TGCTGCTGATCCTACTGCCGCAACCCTCGGTCT-GATCTC-ATCTTAGACTGGGAATGAACTCTG
* * * * *
17011062 TATGCTT-ACATTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAAGGAGCGTGCG-GACG
64 CATGCTTAACA-T-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGTG-CG
** *
17011125 TTCAGTCGACC-AGAGAGGTAGGATGCACAAG
126 TTCAACCGACCGA-AGAGGTAGAATGCACAAG
17011156 TCGGGGATCG
Statistics
Matches: 134, Mismatches: 17, Indels: 12
0.82 0.10 0.07
Matches are distributed among these distances:
182 3 0.02
183 6 0.04
184 125 0.93
ACGTcount: A:0.24, C:0.27, G:0.26, T:0.22
Consensus pattern (183 bp):
TGCTGCTGATCCTACTGCCGCAACCCTCGGTCTGATCTCATCTTAGACTGGGAATGAACTCTGCA
TGCTTAACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGTGCGTTCAA
CCGACCGAAGAGGTAGAATGCACAAGCCAAGGATCGACCTGGTCCCCCCTACG
Found at i:17011799 original size:26 final size:26
Alignment explanation
Indices: 17011762--17011811 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
17011752 GGCTCAAACT
*
17011762 CTTAGACTTGGAATGAACTATGTATG
1 CTTAGACATGGAATGAACTATGTATG
*
17011788 CTTAGACATGGAATGAACTCTGTA
1 CTTAGACATGGAATGAACTATGTA
17011812 AGCCTAAGCC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.32, C:0.14, G:0.22, T:0.32
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTATGTATG
Found at i:17012407 original size:196 final size:196
Alignment explanation
Indices: 17012073--17012550 Score: 665
Period size: 196 Copynumber: 2.4 Consensus size: 196
17012063 TCTGACTAGG
* * * *
17012073 GCTTAGACATGGAATGAACTTCC-TATGCCTAAGCCATCCCACGAAATG-GACGTGAGGGCGCTT
1 GCTTAGACATGGAATGAAC-TCCGTATGCCTAAGCCAACCCACGAAATGAG-CGTGCGGGTGCTC
* ** *
17012136 AACCGATCGGAGAGGCAGAATGAGCAAGCCGAGGATCAGCCCTGTCCCCCCTGTGTGCTACCGAT
64 AACCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCTGTCCCCCCTACGTGCTACCAAT
* * * * *
17012201 CCTACTGCTGGTCCTGTTGCCGCAACCCTC-AGTCCGGTTTGATCTTAGATTGGGAATGAACTCC
129 CCTACTGCTGGTCCTATTGCCACAACCCTCGA-TCCGATCTGATCTTAGACTGGGAATGAACTCC
17012265 GTAT
193 GTAT
* * * *
17012269 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGTGATCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAA
* * * ** * **
17012334 TCGATCGGAGAGGCAGAATGCGCAAGTCGGGGATTGGCCCTGTCCCTCCTACGTGCTGTCAATCC
66 CCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCTGTCCCCCCTACGTGCTACCAATCC
*
17012399 TACTGCTGGTCCTATTGTCACAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTA
131 TACTGCTGGTCCTATTGCCACAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTA
17012464 T
196 T
*
17012465 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAA
17012530 CCGATCGGAGAGGCAGAATGC
66 CCGATCGGAGAGGCAGAATGC
17012551 CTAAGCTAGG
Statistics
Matches: 247, Mismatches: 32, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
195 3 0.01
196 242 0.98
197 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.26, T:0.22
Consensus pattern (196 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAA
CCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCAGCCCTGTCCCCCCTACGTGCTACCAATCC
TACTGCTGGTCCTATTGCCACAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTA
T
Found at i:17012469 original size:26 final size:26
Alignment explanation
Indices: 17012440--17012492 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
17012430 CCGATCTGAT
17012440 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
17012466 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
17012492 C
1 C
17012493 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:17012813 original size:159 final size:158
Alignment explanation
Indices: 17012465--17012827 Score: 383
Period size: 158 Copynumber: 2.3 Consensus size: 158
17012455 AACTCCGTAT
* *
17012465 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAACGTGCGGGCGCTCAA
* * * *
17012530 CCGATCGGAGAGGCAGAATGCCTAAGCTAGGGACCGACCCGATCCCCGCTGCGTGCTGTCGATCC
66 CCAACCGGAGAGGCAGAATGCCTAAGCCAGGGACCGACCCGATCCCCGCTGCGTGCTGCCGATCC
* *
17012595 TACTGCCATAACCCTCGGTCTGATCCAA
131 CACTACCATAACCCTCGGTCTGATCCAA
* * * * *
17012623 TCTTAGA-TTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAACGTTCGGGCGCT-A
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAACGTGCGGGCGCTCA
* * * * * ** *
17012686 AGCCAACCGGAGTGGCATAATGCTTAAGCCGGGGATCGACCCGATCCCTCTTTGCGTGCTGCCGG
65 A-CCAACCGGAGAGGCAGAATGCCTAAGCCAGGGACCGACCCGATCCC-CGCTGCGTGCTGCCGA
** * ***
17012751 TCCCGTTACCATAACCTTCGGT-TCGA-CTGGG
128 TCCCACTACCATAACCCTCGGTCT-GATC-CAA
* * *
17012782 GCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCAGGAAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAA
17012828 CGGGCGTACG
Statistics
Matches: 165, Mismatches: 34, Indels: 11
0.79 0.16 0.05
Matches are distributed among these distances:
157 3 0.02
158 93 0.56
159 68 0.41
160 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.21
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAACGTGCGGGCGCTCAA
CCAACCGGAGAGGCAGAATGCCTAAGCCAGGGACCGACCCGATCCCCGCTGCGTGCTGCCGATCC
CACTACCATAACCCTCGGTCTGATCCAA
Found at i:17012879 original size:159 final size:156
Alignment explanation
Indices: 17012465--17012988 Score: 494
Period size: 159 Copynumber: 3.3 Consensus size: 156
17012455 AACTCCGTAT
* * * *
17012465 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTCAG
* * **
17012530 CCGATCGGAGAGGCAGAATGCCTAAGCTAGGGACCGACCCGATCCCCGCTGCGTGCTGTCGATCC
66 CCGATCGGAGAGGCAGAATGCC-AAGCTGGGGATCGACCCGATCCCCTTTGCGTGCTGTCGATCC
*** ***
17012595 TACTGCCATAACCCTCGGTCTGATCCAA
130 CGTTGCCATAACCCTCGGTCTGAT-GGG
* * ** * * * * * *
17012623 TCTTAGA-TTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAACGTTCGGGCGCTAA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTCA
* * * * * * * *
17012687 GCCAACCGGAGTGGCATAATGCTTAAGCCGGGGATCGACCCGATCCCTCTTTGCGTGCTGCCGGT
65 GCCGATCGGAGAGGCAGAATGC-CAAGCTGGGGATCGACCCGATCCC-CTTTGCGTGCTGTCGAT
* *
17012752 CCCGTTACCATAACCTTCGGT-TCGACTGGG
128 CCCGTTGCCATAACCCTCGGTCT-GA-TGGG
* * *
17012782 GCTTAGACATGGAATGAACTCCCTACGCCTAAGCCAACCCAGGAAACGGGCGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTCAG
* * * * * *
17012847 CCGATTGGAAAGGCAGAATGCACAAGTTGGGGATCGACCCGGTCCCCTTCTACGTGCTATCGATC
66 CCGATCGGAGAGGCAGAATGC-CAAGCTGGGGATCGACCCGATCCCCTT-TGCGTGCTGTCGATC
* * *
17012912 CCGTTGCCACAACCCTCGATCTGGTTGGG
129 CCGTTGCCATAACCCTCGGTCT-GATGGG
* * * *
17012941 GCCTAGACAAGGAATGAACTCCCTATGCCTAAGCCAACCTACGAAACG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACG
17012989 GGCATGTGGC
Statistics
Matches: 290, Mismatches: 68, Indels: 15
0.78 0.18 0.04
Matches are distributed among these distances:
157 1 0.00
158 95 0.33
159 190 0.66
160 4 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGTGCTCAG
CCGATCGGAGAGGCAGAATGCCAAGCTGGGGATCGACCCGATCCCCTTTGCGTGCTGTCGATCCC
GTTGCCATAACCCTCGGTCTGATGGG
Done.