genome.fa.s12.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167837.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_109, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82430

Tables:   1   

This is table  1  of  1  ( 92 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5857--5926	24	2.8	24	79	18	72	45	0	2	51	1.16
5857--5909	27	2.0	26	82	14	63	47	0	3	49	1.19
6841--6898	18	3.3	18	73	11	57	43	1	0	55	1.10
7398--7445	17	2.9	16	87	9	69	66	0	0	33	0.92
8159--8218	23	2.7	22	80	12	61	30	3	1	65	1.19
8186--8299	17	6.7	17	68	14	65	23	7	0	68	1.20
8182--8297	44	2.8	40	73	21	119	24	6	0	68	1.17
8203--8272	27	2.5	28	80	17	76	21	7	1	70	1.20
8183--8281	23	4.4	23	70	14	80	22	6	1	70	1.15
8229--8297	19	3.5	18	79	16	66	24	5	0	69	1.10
8614--8638	4	6.2	4	100	0	50	24	0	0	76	0.80
8676--8759	6	13.5	6	76	16	82	16	4	0	78	0.91
8676--8749	17	4.4	17	85	10	107	16	5	0	78	0.93
8779--9133	58	6.1	56	78	11	326	43	7	12	36	1.71
8846--9083	121	2.0	121	87	5	347	42	7	11	37	1.70
13100--13162	18	3.3	18	71	16	56	77	0	15	6	0.96
13097--13186	8	11.5	8	79	14	91	77	0	14	7	0.97
14457--14516	22	2.7	22	87	5	77	38	8	20	33	1.82
14703--14784	43	1.9	42	90	7	130	37	9	15	36	1.81
15074--15378	41	7.4	40	76	14	214	23	14	20	40	1.90
15074--15403	121	2.7	123	79	7	321	24	15	20	39	1.91
15243--15452	86	2.5	85	85	3	282	26	16	19	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15103--15497	42	9.4	41	82	6	305	24	15	20	38	1.92
15518--15565	10	4.7	10	78	14	53	87	6	2	4	0.73
15784--15842	22	2.6	22	86	5	73	25	5	0	69	1.09
15810--15865	27	2.2	25	81	12	69	21	7	0	71	1.09
15835--15876	17	2.4	17	84	4	57	23	7	0	69	1.13
15785--15898	44	2.6	42	75	13	106	23	6	0	69	1.17
16211--16340	12	10.9	12	73	11	65	23	3	3	70	1.15
16208--16342	27	5.1	27	66	24	67	22	2	2	71	1.13
16275--16347	6	12.5	6	83	11	82	17	2	0	79	0.85
16385--16570	58	3.2	56	83	6	239	44	5	13	36	1.69
16441--16700	133	2.0	130	91	5	425	43	6	15	33	1.73
16494--16645	75	2.0	75	87	5	218	44	5	18	31	1.74
16574--16894	58	5.5	57	75	12	285	41	6	14	38	1.71
16574--16889	113	2.7	115	85	8	383	41	6	14	37	1.71
17415--17447	17	1.9	17	93	0	57	63	6	3	27	1.32
18402--18461	30	2.0	30	96	0	111	58	8	10	23	1.57
21348--21396	22	2.3	21	75	6	55	42	0	6	51	1.27
21576--21618	19	2.2	20	83	4	52	41	2	2	53	1.26
22046--22072	14	1.9	14	100	0	54	44	25	14	14	1.84
24764--25210	222	2.0	225	85	4	616	36	8	6	48	1.60
26203--26258	17	3.2	19	70	17	57	42	0	1	55	1.10
26949--27022	32	2.1	35	83	11	91	45	0	0	54	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26951--27015	15	4.0	15	70	22	51	44	0	0	55	0.99
28710--29168	144	3.2	141	82	4	571	26	22	15	35	1.94
33505--33539	18	1.9	18	88	0	52	42	0	0	57	0.99
33513--33710	43	4.3	43	66	21	107	37	2	5	54	1.35
33645--33683	21	2.0	21	85	14	57	41	0	0	58	0.98
35241--35275	18	1.9	18	88	0	52	45	0	2	51	1.16
35496--35538	22	1.9	22	85	4	59	32	2	2	62	1.20
35515--35565	13	4.0	13	75	14	52	37	0	1	60	1.08
36168--36250	39	2.1	40	95	2	150	42	9	6	42	1.62
37714--38135	210	2.0	210	94	0	745	35	13	12	38	1.83
39994--41735	144	12.2	144	94	2	2969	27	23	16	33	1.95
39994--41735	571	3.0	572	93	3	2945	27	23	16	33	1.95
41335--41702	72	5.1	72	62	20	203	28	21	17	32	1.96
47476--47527	16	3.2	16	78	10	52	38	7	9	44	1.66
51055--51079	7	3.6	7	100	0	50	88	0	0	12	0.53
51083--51132	6	8.7	6	86	8	50	18	6	0	76	0.99
51083--51132	12	4.3	12	85	10	59	18	6	0	76	0.99
51080--51125	16	2.7	16	86	10	56	17	8	0	73	1.07
51088--51135	22	2.2	22	85	3	62	18	4	0	77	0.93
52996--53065	32	2.2	31	85	9	97	47	10	8	34	1.68
53436--53483	21	2.3	21	82	10	55	58	0	8	33	1.28
53826--53856	12	2.7	12	95	5	55	48	19	6	25	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53866--54355	269	1.8	262	87	5	734	41	5	8	43	1.58
55403--55481	37	2.1	37	83	11	97	55	0	0	44	0.99
55387--55456	20	3.3	21	86	9	90	60	0	0	40	0.97
57641--58017	194	1.9	194	93	2	650	36	15	12	35	1.84
58317--58371	23	2.5	22	75	16	60	50	0	7	41	1.30
58520--58570	26	1.9	27	84	4	68	29	1	3	64	1.22
59717--59766	20	2.5	20	81	12	59	16	6	4	74	1.17
59910--60666	49	16.0	48	86	9	890	34	26	12	26	1.92
60091--60650	186	3.0	185	82	10	685	34	27	12	25	1.92
61451--61481	11	2.8	11	90	0	53	0	6	3	90	0.55
70703--70753	26	1.9	27	88	4	77	29	0	3	66	1.09
70840--70892	7	6.4	8	81	18	56	83	0	1	15	0.74
70853--70892	15	2.6	16	84	8	55	87	0	2	10	0.63
70934--70972	13	3.0	13	82	14	53	0	20	46	33	1.51
71896--71945	20	2.5	20	81	12	59	16	6	4	74	1.17
72134--72185	26	2.0	27	84	3	70	28	3	0	67	1.08
73449--73478	2	15.0	2	100	0	60	50	0	0	50	1.00
73819--73911	49	1.9	49	88	2	143	43	7	5	44	1.55
74040--74070	13	2.3	14	94	5	55	54	0	9	35	1.33
75616--75682	25	2.7	26	76	15	70	49	0	2	47	1.16
77595--77652	19	3.3	18	70	20	52	36	8	1	53	1.42
77741--77798	13	4.3	13	71	6	53	60	0	0	39	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77712--77798	41	2.1	41	84	16	110	59	0	1	39	1.05
77745--77797	27	2.0	27	84	0	70	62	0	0	37	0.96
79187--81647	917	2.7	912	83	7	3023	33	9	23	33	1.86
81108--81206	49	2.0	51	84	7	132	46	8	17	28	1.76

Tables:   1

The End!