Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167945.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_206, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 51494
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Found at i:1257 original size:26 final size:26
Alignment explanation
Indices: 1217--1269 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1207 GTTGACTTAG
* *
1217 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGCTCATTCCCAATCTAA
*
1243 GCATACGGAGCTCATTCCCAATCTAA
1 GCATACAGAGCTCATTCCCAATCTAA
1269 G
1 G
1270 ATCAGGCTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGCTCATTCCCAATCTAA
Found at i:1762 original size:894 final size:878
Alignment explanation
Indices: 1--1924 Score: 2641
Period size: 894 Copynumber: 2.2 Consensus size: 878
1 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
1 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
*
66 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
66 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTC
* * * *
131 TGGCCGACGTAGTGCCCGCTCGCCTGCTCGCTCGCCCGTCGTGTCGGATGGCTTAGGCATACGGA
131 TGGCCGACGTAGTGCCCGCCCGCCCGCACGCTCGCCCGTCGTGTCGGATGGCTTAGGCATACAGA
* *
196 GTTCATTCCCAGTCTAAGATCAAACCAGACCGGGGTTGCGGCAGCAAGATTAACAGCACGCAGAG
196 GTTCATTCCCAGTCTAAGATCAAACCAGACCGGGGTTACGACAGCAAGATTAACAGCACGCAGAG
* * **
261 GGGGACCCGGCCGATCCCCGTCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGTACGCTC
261 GGAGACCCGACCGATCCCCGGATTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGTACGCTC
* * *** * * * *
326 ATTTCGTGGTTTGACTCAGGCATACGGAGTTCATTCCCTATGTAAGATCGGACCGGACCGAGGGT
326 AGTTCAT-GTCCCACTCAAGCATACGGAGCTCATTCCCAATCTAAGATCGGACCGGACCGAGGGT
* * *
391 TGCATAAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCATCGTCGGGGCACCATC
390 TACAGAAGCACATGCTGGGCTCGGCCATGTGCTGGTGCCGCATTTTTCATCGTCGGGGCACCATC
* ** *
456 CCCGGAGCATCGCTGGAGAACCTGACCGACGGCATTGGGGTTTCGTCGATCGGGGGGCCGAAGGG
455 ACCGGAGCATCGCCAGAGAACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGCCGAAGGG
*
521 GGGTGTGCGCACATGATGTAACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
520 GGGTGTGCGCACATGATGTAACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCA
* *
586 CAGCAAACCTCGAGAAGTCACACCCCCTTAAAGAGCATTTGAGATTTTGCAAGTTTGCTGCCAGT
585 CAGCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGT
651 AGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATAGTCACAAATCTTGTACACTTCAAT
650 AGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATAGTCACAAATCTTGTACACTTCAAT
* * * * * *
716 TTTTTTAGATGAATTTTTTTGTGCATGCCTACAAAAATACAGGGATCACGTCCATAAAGTTTGGG
715 GTTTTTAGATGAATATTTTTGTGCATGCCAACAAAAATACAAGGATCACGACCACAAAGTTTGGG
* *
781 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAA
780 GCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAA
*
846 AAATAGAAAACGAGTCGTCTTG-CATTGAAACTTC
845 AAAAAGAAAACGAGTCGTCTTGCCA-TGAAACTTC
* * * *
880 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGCATTAGCACGTAGAA
1 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
945 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTC
66 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTC
* * *
1010 TGGCCGACGTAGTGCCC-CCCGCCCGCACGC-CTGCCCGCTTGTTTCGTTAGTTGGCTTAGGCAT
131 TGGCCGACGTAGTGCCCGCCCGCCCGCACGCTC-GCCCG-TCGTGTCG---GATGGCTTAGGCAT
* ** * ***
1073 ACAGAGTTCATTCCGC-GTCTAAGATCAGACCAGACCGGGGGTTACGATGGCAGGATTGGTAGCA
191 ACAGAGTTCATTCC-CAGTCTAAGATCAAACCAGACC-GGGGTTACGACAGCAAGATTAACAGCA
* * ** * * **
1137 CGTAGAGGGAGACCCGATCGATCCTTGGATTGTGCATCCCGCCCCTCTGGCTGGCACGCTTGTTT
254 CGCAGAGGGAGACCCGACCGATCCCCGGATTGCGCATCCCGCCCCTCTGGC-CG-A--C-TG-AG
*** *
1202 CGTGGGTTGACTTAGGCATACAGAGTTCAT-TCCCAGTCTAAGCATACGGAGCTCATTCCCAATC
313 CGCCCG-T-AC----GC-T-C--AGTTCATGTCCCACTC-AAGCATACGGAGCTCATTCCCAATC
* * * * *
1266 TAAGATCAGG-CTGGTCCGAGGGTTACGGCAGCACATGCTGGGCTCGGCCTTGTGCTGGTGCCGC
367 TAAGATC-GGACCGGACCGAGGGTTACAGAAGCACATGCTGGGCTCGGCCATGTGCTGGTGCCGC
* *
1330 ATTTTTCTTCGTCGGGGCACCATCACCGGAGCGTCGCCAGAGAACCTGACCGACGGCATTGGGGT
431 ATTTTTCATCGTCGGGGCACCATCACCGGAGCATCGCCAGAGAACCTGACCGACGGCATTGGGGT
* **
1395 TTCGACGATCGGGGGGTCG-A-GGGGGTGTGCGCACATGATGT-GTGATGGGTGCTGGTACTTGG
496 TTCGACGATCGGGGGGCCGAAGGGGGGTGTGCGCACATGATGTAACGATGGGTGCTGGTACTTGG
* *
1457 CCCTTATATTGGCCCCCTATCCCACATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTG
561 CCCTTATATTGGCCCCCTATCCCACAGCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* * *
1522 AGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCT-ATAATGGGGACA-TTTTTTCAAAT
626 AGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA-AATAGGGACACTTTTTTCAAAT
* * *
1585 GGTCACAAAATCTTGTACACTTCGA-GTTTTTAGCTGAATATTTTTGTGCATGCCAACAAAAATA
690 AGTCAC-AAATCTTGTACACTTCAATGTTTTTAGATGAATATTTTTGTGCATGCCAACAAAAATA
* *
1649 CAAGGATCACGACTACAAAGTTTGGGGTCAAAACTCCTTCCAAAAAAATTTTAAAAAAT-CTCGA
754 CAAGGATCACGACCACAAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCT-GA
* *
1713 ACCGTAAAAAGTTTCAAAATTCATGAAAAAAAGAAAACGAGTTGTCTTGCCATGAAACTTC
818 ACCGTAAAAAGTTTCAAAAATCATGAAAAAAAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * *
1774 ACATGAAGGCATAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATTGGCATGCAGAA
1 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
* *
1839 ATATGAAGATGAGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGTATCTCGTCTCTC
66 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTC
* *
1904 TGGCCGGCTTAGTGCCCGCCC
131 TGGCCGACGTAGTGCCCGCCC
1925 AACAAAAATC
Statistics
Matches: 917, Mismatches: 98, Indels: 44
0.87 0.09 0.04
Matches are distributed among these distances:
877 1 0.00
878 15 0.02
879 148 0.16
882 45 0.05
883 62 0.07
884 1 0.00
885 1 0.00
887 1 0.00
888 2 0.00
889 3 0.00
890 1 0.00
891 2 0.00
893 2 0.00
894 297 0.32
895 150 0.16
896 22 0.02
897 6 0.01
898 151 0.16
899 7 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (878 bp):
ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTC
TGGCCGACGTAGTGCCCGCCCGCCCGCACGCTCGCCCGTCGTGTCGGATGGCTTAGGCATACAGA
GTTCATTCCCAGTCTAAGATCAAACCAGACCGGGGTTACGACAGCAAGATTAACAGCACGCAGAG
GGAGACCCGACCGATCCCCGGATTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGTACGCTC
AGTTCATGTCCCACTCAAGCATACGGAGCTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTT
ACAGAAGCACATGCTGGGCTCGGCCATGTGCTGGTGCCGCATTTTTCATCGTCGGGGCACCATCA
CCGGAGCATCGCCAGAGAACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGCCGAAGGGG
GGTGTGCGCACATGATGTAACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCAC
AGCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTA
GCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATAGTCACAAATCTTGTACACTTCAATG
TTTTTAGATGAATATTTTTGTGCATGCCAACAAAAATACAAGGATCACGACCACAAAGTTTGGGG
CCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAA
AAAAGAAAACGAGTCGTCTTGCCATGAAACTTC
Found at i:2094 original size:219 final size:219
Alignment explanation
Indices: 1715--2143 Score: 696
Period size: 219 Copynumber: 2.0 Consensus size: 219
1705 AATCTCGAAC
*
1715 CGTAAAAAGTTTCAAAATTCATGAAAAAAAGAAAACGAGTTGTCTTGCCATGAAACTTCACATGA
1 CGTAAAAAGTTTCAAAAATCATGAAAAAAAGAAAACGAGTTGTCTTGCCATGAAACTTCACATGA
*
1780 AGGCATAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATTGGCATGCAGAAATATGA
66 AGGCATAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATTGGCACGCAGAAATATGA
* * *
1845 AGATGAGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGTATCTCGTCTCTCTGGCCG
131 AGACGAGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* *
1910 GCTTAGTGCCCGCCCAACAAAAAT
196 ACGTAGTGCCCGCCCAACAAAAAT
* * *
1934 CGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGA
1 CGTAAAAAGTTTCAAAAATCATGAAAAAAAGAAAACGAGTTGTCTTGCCATGAAACTTCACATGA
* * * *
1999 AGGCTTAAGGGTCCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGA
66 AGGCATAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATTGGCACGCAGAAATATGA
* * *
2064 AGACGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGTCG
131 AGACGAGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
*
2129 ACGTAGTGCCTGCCC
196 ACGTAGTGCCCGCCC
2144 GCCTACCCGC
Statistics
Matches: 192, Mismatches: 18, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
219 192 1.00
ACGTcount: A:0.33, C:0.24, G:0.20, T:0.23
Consensus pattern (219 bp):
CGTAAAAAGTTTCAAAAATCATGAAAAAAAGAAAACGAGTTGTCTTGCCATGAAACTTCACATGA
AGGCATAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATTGGCACGCAGAAATATGA
AGACGAGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
ACGTAGTGCCCGCCCAACAAAAAT
Found at i:2368 original size:26 final size:26
Alignment explanation
Indices: 2338--2390 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
2328 GTTGACTTAG
2338 GCATACGGAGTTC-ATTCCTAGTCTAA
1 GCATACGGAGTTCGATTCC-AGTCTAA
*
2364 GCATACGGAGTTCGTTTCCAGTCTAA
1 GCATACGGAGTTCGATTCCAGTCTAA
2390 G
1 G
2391 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCGATTCCAGTCTAA
Found at i:3753 original size:26 final size:26
Alignment explanation
Indices: 3724--3781 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
3714 AAAGTTTTAA
**
3724 AAAAATCCCGAACCGCAAATGGTTTC
1 AAAAATCCCGAACCGCAAAAAGTTTC
* *
3750 AAAAATCTCGAACCGTAAAAAGTTTC
1 AAAAATCCCGAACCGCAAAAAGTTTC
3776 AAAAAT
1 AAAAAT
3782 TGTGAAAAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.47, C:0.21, G:0.12, T:0.21
Consensus pattern (26 bp):
AAAAATCCCGAACCGCAAAAAGTTTC
Found at i:4197 original size:25 final size:26
Alignment explanation
Indices: 4159--4210 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
4149 GTTGACTTAG
4159 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
4185 GCATAC-GAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4210 G
1 G
4211 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 19 0.76
26 6 0.24
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5415 original size:903 final size:901
Alignment explanation
Indices: 1934--6655 Score: 6380
Period size: 903 Copynumber: 5.2 Consensus size: 901
1924 CAACAAAAAT
** *
1934 CGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGA
1 CGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* *
1999 AGGCTTAAGGGTCCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGA
66 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGA
* * *
2064 AGACGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGTCG
131 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * * * *
2129 ACGTAGTGCCTGCCCGCCTAC-CCGCAAGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTAA
196 GCGTAGTGCCCGCCCGCC--CGCCGC-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * ** * **
2193 TTTCCAGTTTAAGATCAGACTAGATCGAGGGTTACGACAGCAGGATCGGTAGCAC-GCAGAGGGG
258 TTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGTAGCAGGATC-G-AGCACAGCAGAGGGG
* * * * * * * *
2257 GACCCAATCGATCCCCTGCTTGGGCATCCCGCCCCTATGGCCAGCTGCGCGCCCGTACGCTCGTT
321 GACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
* * * *
2322 TCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCGTTTCCAGTC
386 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* ** * * * *
2387 TAAGATCGAACTGGACCGAGGGTTGTGGCAGCACATGCTTGTCTCGAGCATGTGCTGGTGCTGCA
451 TAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGAGCATGTGCTGGTGCTGCA
* * *
2452 TTTTTCTTCATCGGGGCACCATCGTCGGAGCATC-ATCGGAGAACCTGACCGGCTGCATTGGGGT
516 TTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCT-GGAGAACCTGACCGGCGGCATTGGGGT
* *
2516 TTCGACGATCAGGGGGGCC-A--GGGGTTTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
580 TCCGACGATC-GGGGGGCCGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* * *
2578 CCTTACATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATATGA
644 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* * * *
2643 GATTTTACAGGTTTACTGCCAGTAGTCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGA
709 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* * *
2708 TCACAAAATCTTGTACGCTTTGAGTTTTTAGTTG-ATTGTTTTTGTGCATGCCAACAAAAATACA
774 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTTGTGCATGCCAACAAAAATACA
* * * **
2772 AGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGGAC
838 AGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAAC
* *
2836 CGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGA
1 CGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* *
2901 AGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
66 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGA
* * *
2966 AGATGTGCCTCAACCCACCTACCATCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCG
131 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
** * * *
3031 GCGTAAAGCCCACCCGCCCG--TCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTC
196 GCGTAGTGCCCGCCCGCCCGCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * *
3094 CCAATCTAAGATTAGACCGGATCGATGGTTGCGGTAGTAGGATCGGTAGCAC-GCAGAGGGGGAC
261 CCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGTAGCAGGATC-G-AGCACAGCAGAGGGGGAC
* * *
3158 CCGATCGATCCCCGGCTTGCGCATCCC-CCCCTCTGGCAGGCTGAGCGCCCGCACGCTCGTTTTG
324 CCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
* * * * *
3222 TTGGTTGACTTAGGCTTGCGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAATCTAA
389 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * * **
3287 GATCGGACCAGACCGAGGGTTACGGTAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTT
454 GATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGAGCATGTGCTGGTGCTGCATTT
** * * *
3352 TTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTTCG
519 TTCTTCGTCGGGGCACCATCGTCGGAGCATCGCTGGAGAACCTGACCGGCGGCATTGGGGTTCCG
** * *
3417 GTGATCGGAAGGGCCG-GGGGGGTGTGCGCAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
584 ACGATCGG-GGGGCCGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
*
3481 CTATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
648 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* * *
3546 TTACAGGTTTGTTGCCAGTAGCCATTAAAGTATCTAAAATGGGGACACTTTTTTCAAATGGTCAC
713 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* * * *
3611 AAAATCTTGTACACTTCGAGTTTGTAGCTGATTTTTTTTTGTGCAAGCCAAAAAAAATACAAGGA
778 AAAATCTTGTACACTTCGAGTTTTTAGCTGA-ATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* * *
3676 TCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCAAAAAAGTTTTAAAAAAATCCCGAACCGCA
842 TCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCAAAAAAATTTT-AAAAAAT-------C-C-
3741 AATGGTTTCAAAAATCTCGAAC
897 --------C----A-----AAC
*
3763 CGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
1 CGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
3828 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGA
66 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGA
* * * *
3893 AGATGTGCCAAAACCCACCTACCACCCTATCGTTCCACGGCTTGCGGATCCCGTCCCTCTGGCCG
131 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
** * **
3958 GTATAGT----GCCCGTCCG-C-CCGCTCGTTTAATCGGTTGGCTTAGGCATACGGAGTTCATTC
196 GCGTAGTGCCCGCCCGCCCGCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * *
4017 CCAGTCTAAGATCAGACCAGA-CTGAGGGTTGCAGG-AGCAGGAT-GAACAGCATGCAGAAGGGG
261 CCAGTCTAAGATCAGACCGGATC-GAGGGTTGC-GGTAGCAGGATCGAGCA-CA-GCAGAGGGGG
* * * * *
4079 ACCCGGCCGATTCTCGACTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTT
322 ACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
*
4144 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-GAGTTCATTCCCATTCT
387 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * * *
4208 AAGATCGGACCGGACCGAGGGTTGCGGTAGCACATGCTGGGCTTGGGCATGTGCTGGTG-TCGCC
452 AAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGAGCATGTGCTGGTGCT-GCA
4272 TTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCG-TCGGAGAACCTGACCGGCGGCATTGGGGT
516 TTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCT-GGAGAACCTGACCGGCGGCATTGGGGT
* *
4336 TCCGACGATCGGGGTGGCCGAGGGGGGTGTGCGGACATGATGTGTGATGGGTGCTGGTACTTGGC
580 TCCGACGATCGGGG-GGCCGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
*
4401 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGA
644 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
*
4466 GATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
709 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* * * *
4531 TCAAAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGCGCACGCGAACAAAAATACAA
774 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
** ** * *
4596 GGATCATATCTAATAAGTTTCGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAAC
839 GGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAAC
* *
4659 CGTACAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGGCATGAAACTTCACGTGA
1 CGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* * *
4724 AGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAGAATGGCATTGGCACGCAGAAATAAGA
66 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGA
*
4789 AGATGTGCCT-AACCCACCAACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
131 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* *
4853 GCGTAGTGCCCGCCCTCCCGCCTGCTCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCAT
196 GCGTAGTGCCCGCCCGCCCGCC-GC-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * * * *
4918 TCCCAGTCTAAGATCGGATCGGATCGAGGGTTGTGGTAGGAAGATCGACCACATGCAGAGGGGGA
259 TCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGTAGCAGGATCGAGCACA-GCAGAGGGGGA
* * * * * *
4983 CCCGACCTATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCTGCTGAGCTCCCTCACGCTTGTTTC
323 CCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
* * * *
5048 GTGGGTTAACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCTTACGGAGTTCATTCACAGTCTA
388 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * *
5113 AGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTAGGCTTGAGCATGTGTTGGTGCTGCATT
453 AGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGAGCATGTGCTGGTGCTGCATT
* * *
5178 TTTCTTTGTCGGGGCACGATCGTCGAAGCATCGCTGGAGAACCTGACCGGCGGCATTGGGGTTCC
518 TTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCTGGAGAACCTGACCGGCGGCATTGGGGTTCC
* * *
5243 GCCGATCTGGGGGGTCGAGGGGGGTGCGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
583 GACGATC-GGGGGGCCGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* *
5308 TATATTGGCCCCCTATCCCACATCAAACATCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGAT
647 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
*
5372 TTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
712 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* * * * *
5437 CAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT-TACGTGCCAAAAAAAATAAAAGGA
777 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* **
5501 TCACGTCTACCAAGTTTAGGACCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAAC
842 TCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAAC
** * * *
5561 TTTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGACTTGCCAGGAAACTTCACGTGA
1 CGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* * * *
5626 AGGCTTAAAGGACCATTGTACGAATTTACAAGCCATAGAAATGGCATTGGCATGCAGAAATATGA
66 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGA
* ** * *
5691 AGATGTGCCTAAACCCACCTACAACCCTATCGATCCACGGCTTTTGCATCCCGTCTCTTTGGCCA
131 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * * * *
5756 GCGTAGTGCCCGCCCGCCCATCCGCCCGTTCATTTCGTCGATTGGCTTAGGCATATGGAGTTCAT
196 GCGTAGTGCCCGCCCGCCC-GCCG-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * * ****
5821 TCCTAGTCTAAGATCAGCCCGGACCGAGGGTTACGGTAGCAGGATCGA-CAGCACGCAGAAACAG
259 TCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGTAGCAGGATCGAGCA-CA-GCAGAGGGGG
* * * * *
5885 ACCC-AGCCGATCCCCGGCTTGTGTATCCCGCCCCTCTGGCCGGCTGAGTGCCCACACTCTCGTT
322 ACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
* * *
5949 TCGTGGGTTGACTTAGGCATACGAAGTTCATTCCAAGTCTAACCATACGGAGTTCATTCCCAGTC
386 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* * * **
6014 TAAGATCGGACCTGACCGAGGGTTGCAGCAGCACATGCTGGGC-TCAGGCATGTGCTGGTGCCCC
451 TAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGA-GCATGTGCTGGTGCTGC
* * *
6078 ATTTTTCTTCGTCGGTGCACCA---TC---G--T---TGGAGAACCTGACCGACGGCATTGCGGT
515 ATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCTGGAGAACCTGACCGGCGGCATTGGGGT
* * *
6132 TCCGGCGATCAGGGGGGTCG-GGGGGGATGTGCACACATGATGTGCGATGGGTGCTGGTACTTGG
580 TCCGACGATC-GGGGGGCCGAGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
6196 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
643 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
*
6261 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAATGGGGACACTTTTTTCAAATG
708 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* * * *
6326 GTCACAAAATCTTGTACACTTCGAGTTTTTAGATGAATTTTTTTATGTATGGCAACAAAAATACA
773 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
*
6391 AGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAT-CCAGAC
838 AGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAAC
*
6454 CGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGGGTCGTCTTGCCATGAAACTTCACGTGA
1 CGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* * *
6519 AGGCTTAAGGGGCCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGA
66 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGA
* * *
6584 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTCGAGCATCCCGTCTCTCTAGCCG
131 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
*
6649 GTGTAGT
196 GCGTAGT
6656 ACCACCCGTC
Statistics
Matches: 3386, Mismatches: 364, Indels: 149
0.87 0.09 0.04
Matches are distributed among these distances:
891 6 0.00
892 123 0.04
893 309 0.09
894 70 0.02
895 56 0.02
896 138 0.04
897 209 0.06
898 114 0.03
899 197 0.06
900 74 0.02
901 10 0.00
902 397 0.12
903 636 0.19
904 235 0.07
905 7 0.00
908 1 0.00
909 1 0.00
914 1 0.00
915 1 0.00
918 1 0.00
920 3 0.00
921 2 0.00
922 9 0.00
923 322 0.10
924 276 0.08
927 188 0.06
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (901 bp):
CGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGA
AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
GCGTAGTGCCCGCCCGCCCGCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
CCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGTAGCAGGATCGAGCACAGCAGAGGGGGACCC
GACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
TCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGAGCATGTGCTGGTGCTGCATTTTT
CTTCGTCGGGGCACCATCGTCGGAGCATCGCTGGAGAACCTGACCGGCGGCATTGGGGTTCCGAC
GATCGGGGGGCCGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
GTCTACCAAGTTTAGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAAC
Found at i:6002 original size:26 final size:26
Alignment explanation
Indices: 5966--6016 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
5956 TTGACTTAGG
5966 CATACGAAGTTCATTCCAAGTCTAAC
1 CATACGAAGTTCATTCCAAGTCTAAC
* *
5992 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGAAGTTCATTCCAAGTCTAA
6017 GATCGGACCT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACGAAGTTCATTCCAAGTCTAAC
Found at i:9026 original size:897 final size:883
Alignment explanation
Indices: 6690--9926 Score: 4269
Period size: 906 Copynumber: 3.7 Consensus size: 883
6680 GTCGGGGCAC
* * *
6690 CATCACCGGAGAACCTGACCGACGGAATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGTGTGCA
1 CATCACCGGAGAACCTGACCGAC-GCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCG
6755 CACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
65 CACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* *
6820 CAAGAACTCACACCCCCTTCAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
130 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* * *
6885 GTGTTTGAAATCGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
195 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* * * *
6950 GAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCTAGCTTGGGGCCAAAACTC
260 GAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* * **
7015 CTTCCGAAAAAATTTTAAAAAATCCCAAACATCAAAAAGTTTTGAAAATCATGAAAAATAGAAAA
325 CTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAA
* *
7080 CGAGTCGTCTTGCCATGAAACATCACGTGAAGGCTTAAGGGACGATTGTATGAATTTACAAGCCA
390 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
**
7145 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
455 TAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
** * *
7210 CACAACTTGCGCATCCCGTCTCTTTGGCCGGCATAGTGCCCGCCCGCCCACCCGCCCGCTCGTTT
520 CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCG--C-CCCGCCCGCTCGTTT
* * * * * **
7275 CGTCGGTTGGCTTAGGCATATGGAGTTCGTTCCTAGTTTAAGATCGGATCAGATCGAGGGTTACG
578 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCAGACCGAGGGTTGTG
* * *
7340 GTAGCAGGATCGACAGCATGTAGAGGGGGACCCGGTCGATCCCCGACTTGCGTGTCCCACCCCTC
643 GTAGCAGGATCGACAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTG-G-ATCCCA-CCCT-
* * * *
7405 AGGCCTGCTGAGCACCCGCACGCTCATTTCATGGCTTGACTTAGGCATACGGACTTCATTCCCAG
704 -GG-CTGCTGAG-ACCCGCAC-CTC-TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCTG
** * * * *
7470 TCTAAGCATACGGAGTTCATTCCTGGTTTATGATCGGACCAGACCGAGGGTTGCAGCAGCACATA
764 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATG
* * *
7535 CTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATTGCCGGTG
829 CTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTC--CGGGGCACCA-CGTCGGAG
* * * * *
7593 CATCGCCAGAGAACCTGATCGGCGACTTTGGGGTTCC-AGCGATCGGGGGGGCCGAGGGGGTGTG
1 CATCACCGGAGAACCTGACCGACG-CATTGGGGTTCCGA-CGATCGGGGGGGCCG-GGGGGTGTG
* * * * *
7657 TACGAACATTATGTGTGATTGGTACTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
63 --CGCACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* * *
7722 ACTTCGAGAACTCACACCCCCTTAAAGAGCATTTGACATTTCACAGGTTTGCTGCCAGTAGCCAT
126 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
7787 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
191 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
*
7852 AGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
256 AGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* * * * *
7917 AATACTTCC-AAAAGAATTTTAAAAAATCTCGAGCCGTAAAAAGTTTTGAAAATCATGATAAATA
321 ACTCCTTCCGAAAA-AATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATA
*
7981 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTACA
385 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* * *
8046 AGCCATAAAAATGGCATTGGCACATAGAAATATGATGATGTGCCTAAACCCACCTGCCACCCTAT
450 AGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * *
8111 CGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCG-CCCGCCCGCTCGTTCCG
515 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCGCCCGCTCGTTTCG
* * * * * *
8175 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAAATTAGATCGGACCAAGGGTTGTGGC
580 TCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCAGACCGAGGGTTGTGGT
* **
8240 AGCAGGATCGACAGCAGGTAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCACCCTTTTG
645 AGCAGGATCGACAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTG-G-ATCCCACCC---TG
*
8305 GCTGGCTGAGAGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCTGTC
705 GCT-GCTGAGA-CCCGCAC-CTC-TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCTGTC
* *** * *
8370 TAAGCTTACGGAGTTCATTCCCAGTCTAAGATCGGAGTGGACCGATGGTTGCGGCAGCAAATGCT
766 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCT
*
8435 GGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCACCGGGGCACCAACGTCGGAG
831 GGGCTCGGGCATGTGCTGGTGCCACATTTTTCTT--CCGGGGCACC-ACGTCGGAG
* * *
8491 CATCGCCGGAGAACATGACCGACTGCATTGGGGTTCCGACGATCGGGGGGACCGGGGGGTGTGCG
1 CATCACCGGAGAACCTGACCGAC-GCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCG
* * * * * * *
8556 CGCATGATGTGTGAAGGGTGCTGGTACTTGGCCTTTATATTTGCCCCCTATCCCTCATCAGACCT
65 CACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
*
8621 C-ATGAACTTACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
130 CGA-GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * * * *
8685 AGTGTTTGAAATGGGGACACTTTTTTCAAATGGTTACAAAATCTTGTACACTTTGACTTTTTAGT
194 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * *
8750 TGAATTTTTTTTCTTGCATGCCAAGAAAAATACAAGGATCACGTCTACCATGTTTGGTGCCAAAA
259 TGAA-TTTTTTT-TTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * *
8815 CTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTGTTGAAAATCGTGAAAAATAGA
322 CTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGA
* *
8880 AAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAGG
387 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* * **
8945 CCATAAGAATGGCATTAGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
452 CCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * *
9010 ATCCACGGCTTGCGCATCTCGTCTCTTTGGCCGGCGTAGTGCCCGCCCGTCCGCCCACTCGTTTC
517 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CC--CCGCCCGCTCGTTTC
* * *
9075 ATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACTGAGGGTTGTGG
579 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCAGACCGAGGGTTGTGG
* *
9140 TAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCC-G---GGAT-GCA-------TG
644 TAGCAGGATCGACAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTGGATCCCACCCTGGCTG
9193 CT------CG----T-TTT-GTGGGTTGACTTAGGCATACGGAGTTCATT-CCTAGTCTAAGCAT
709 CTGAGACCCGCACCTCTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCT-GTCTAAGCAT
*
9245 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
773 ACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
* *
9310 GGCATGTGCTGGTGCCGCATTTTTCTT-----------CGTC-AAG
838 GGCATGTGCTGGTGCCACATTTTTCTTCCGGGGCACCACGTCGGAG
* *
9344 CATCACCGGAGAACCTGACCGACAGTATTGGGGTTCCAACGATC--GGGGGCCGGGGGAGGTGTG
1 CATCACCGGAGAACCTGACCGAC-GCATTGGGGTTCCGACGATCGGGGGGGCC-GGGG-GGTGTG
* * * * * *
9407 CGCACATGATGTGCGATGGATGCTGGTACTTGGCCCATATGTTGGCCCCCCATCCCTCATCAAAA
63 CGCACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* *
9472 TTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTA
128 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* ** * * *
9537 CAGTGTCTGAAATGGGGATTCTTTTTTCAAACGGTCACAAAATCTTGTACGCTTCGAGTTTTTAA
193 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * **
9602 CTG-ATTTTTTTTTGCATGCCAACAAAAATACAAGAATTACGTCTACCAAGTTTGGGGTGAAAAC
258 CTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* * * ** *
9666 TCCTTCCGAAAAAATTTAAAAAAATCTTGAACCGTAAAAAGTTTCCAAAATCGTGAAAAATAGAA
323 TCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAA
*
9731 AAAGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
388 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
9796 CATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
453 CATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * * *
9861 TCCACGGCTTGCGCATCGCATCTCTCTAGCTGGCGTAGTGCCCG-CCCGCCCGCTTGTTTCGTCG
518 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCGCCCGCTCGTTTCGTCG
9925 GT
583 GT
9927 GCCGTATTTT
Statistics
Matches: 2076, Mismatches: 230, Indels: 113
0.86 0.10 0.05
Matches are distributed among these distances:
846 18 0.01
848 1 0.00
850 266 0.13
851 13 0.01
852 5 0.00
853 218 0.11
854 5 0.00
867 3 0.00
868 122 0.06
869 3 0.00
871 1 0.00
876 2 0.00
883 3 0.00
884 1 0.00
894 3 0.00
895 181 0.09
896 8 0.00
897 277 0.13
898 320 0.15
899 4 0.00
900 3 0.00
901 108 0.05
902 7 0.00
903 43 0.02
904 9 0.00
905 4 0.00
906 448 0.22
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (883 bp):
CATCACCGGAGAACCTGACCGACGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGC
ACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
AATTTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
TTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAAC
GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
AAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCGCCCGCTCGTTTCGTCGGTT
GGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCAGACCGAGGGTTGTGGTAGCAGG
ATCGACAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTGGATCCCACCCTGGCTGCTGAGAC
CCGCACCTCTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCTGTCTAAGCATACGGAGTT
CATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
CTGGTGCCACATTTTTCTTCCGGGGCACCACGTCGGAG
Found at i:9244 original size:26 final size:26
Alignment explanation
Indices: 9215--9267 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
9205 GTTGACTTAG
*
9215 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
9241 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
9267 G
1 G
9268 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10772 original size:26 final size:26
Alignment explanation
Indices: 10743--10795 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10733 GTTGACTTAG
10743 GCATACGGAGTCCATTCCCAGTCTAA
1 GCATACGGAGTCCATTCCCAGTCTAA
*
10769 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTCCATTCCCAGTCTAA
10795 G
1 G
10796 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTCCATTCCCAGTCTAA
Found at i:12523 original size:26 final size:26
Alignment explanation
Indices: 12493--12543 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
12483 TGACTTACGG
*
12493 ATACGGAGTTCATTCTCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
*
12519 ATACGGAGTTCATTCCCAGTGTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
12544 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:13411 original size:26 final size:26
Alignment explanation
Indices: 13381--13431 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
13371 TGACTTACGA
*
13381 ATACGGAGTTCATTCTCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
13407 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
13432 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:14311 original size:892 final size:890
Alignment explanation
Indices: 9946--15948 Score: 7261
Period size: 893 Copynumber: 6.7 Consensus size: 890
9936 TTCTTCACCG
* * ** *
9946 GGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCAACGTCGGAGCATCGCCGGAGAACC
1 GGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCACCAGAGCATCGCCGGAGAACC
* * * ** * *
10011 TGACCGACAGCATTGGGGTTCCGACGATC----G--GGGGGGTGTGCGCGTATGATGTGTGAAGG
66 TGATCGACGGCATTGGGGTTCCGATGATCGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
* * * * *
10070 GTGCTGGTACTTGGCCTTTATATTTGCCCCCTATCCCTCATCAGACCTCGTGAAACTTACA-CCC
131 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG-AACTCACACCCC
10134 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
195 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CAGTAGCCATTAAAGTGTCTGAAATGGGGA
* *
10199 CACTTTTTTCAAATGGAT-ACAAAATCTTGTACACTTCGACTTTTTAGTTGAATTTTTTTTTGGC
259 CACTTTTTTCAAATGG-TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTTGGC
* *
10263 ATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAACTCCTTCCGAAAAAAT
322 ATGCCAA-CAAAATACAAGAATCACGTCTACCAAGTTTGGGGCC-AAAACTCCTTCCGAAAAAAT
* * *
10328 TTTAAAAAATC-CGAACCAGAAAAAGTTT-AAAAATCGTGAAAAATAGAAAATGAGTCATCTTGC
385 TTTAAAAAATCTCGAACCGGAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
10391 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
450 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
** ** * *
10456 GGCACACAGAAATATGAAGACATCCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCA
515 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * * * *
10521 TCTCGTCTCTCTAGTCGACGTAGTGCCCGCCCACCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGG
580 TCCCGTCTCTCTGGCCGACATAGTG-CCG-----CCTGCCCGCTCGTTTCATCGGTTGGCTTAGG
* * * ** * * * * * *
10586 CATACAGAGTTAATTCCCAGTCTAAGATCGGACCAGACCGATGGTTGTGGCAGCAGGATCGGCAG
639 CATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCGACAGCAGGATTGACAG
* * * * * * *
10651 CACGTAGA-GGGGAACCAAGCCGAT-CCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCAC
704 CATGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGC
* * * *
10714 CCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTCCATTCCCAGTCTAAGCATACGGAG
768 CCGCACGCTCGTTTCATGGTTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* * * *
10779 TTCATTCCCAGTCTAAGATCAGA-TCGGACCGAGGGTTGTGGCAGCACATACTGGGCTT
833 TTCATTCCCAGTCTAAGATCAGACT-GGACCGATGGTTGCGGCAGCACATGCTGGGCTC
* * ** * * *
10837 GGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCAGAGAACC
1 GGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCACCAGAGCATCGCCGGAGAACC
* * * * * ** *
10902 TAACCGGCGGTAATGGGGTTCCGGCGATCGGGGG--GGAGCGGTGTGCGCACATGATGTGCGATG
66 TGATCGACGGCATTGGGGTTCCGATGATCGGGGGCCGG-GGGGTGTGCGCACATGATGTGCGATG
* * * *
10965 GGTGCTGGAACTTGGCCCCTATATTGGCCCCCTA-CCCTCATCAAACAAT-GAGAACTCATACCC
130 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC-CTCGAGAACTCACACCC
11028 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
194 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CAGTAGCCATTAAAGTGTCTGAAATGGGG
* *
11093 ACACTTTTTT-AAATGGTCATAAAATCTTGTACAGTTCGAGTTTTTAGCTGAATTTTTTTAT-GC
258 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-TGGC
* ** *
11156 ATGCCAACAAAAATACAAGAATTACGTCTACCAAGTTTGGGGTGAAAACTCCTTCCGAAAAAAAT
322 ATGCCAAC-AAAATACAAGAATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * * * *
11221 TAAAAAAAACTTGAACCGCAAAAAGTTTCCAAAATCGTGAAAAATAGAAAA-GAGTCGTCTTGCC
386 TTAAAAAATCTCGAACCGGAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
11285 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
451 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
*** *
11350 GCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCAT
516 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * * * * * *
11415 CCCATCTCTCTAGCCGGCGTAGTGCCCGCC--CGCGCTTGTTTCGTCGGTTGGCTCAGGCGTACG
581 CCCGTCTCTCTGGCCGACATAGTG-CCGCCTGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACG
* * * * * * * ** *
11478 GAGTTCATTCCCAGTCTAAGATCAGAGTAGACCAAGGGTTACGGCAGCAGGATCGGTAGCACGCA
645 GAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCGACAGCAGGATTGACAGCATGCA
** * *** * *
11543 GAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCG-CCCTCTCATCGGCTGAGCGCCTGCACG
710 GAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACG
* *
11607 CTCATTTCGTAGG-TTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-TA---AG---A-T
775 CTCGTTTCAT-GGTTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* *
11658 --C-G-----GATC--A---GACCGATGGTTGTGGCAGCGCATGCT-GGCTC
839 CCCAGTCTAAGATCAGACTGGACCGATGGTTGCGGCAGCACATGCTGGGCTC
** * * * *
11696 GGGCATGTGCTGGTG-CGTATTTTTTCTTCGCCGGGGCACCATCGTCGGAGTATCACTGGAGAAC
1 GGGCATGTGCTGGTGCCGTA-TTTTTCTTCGCCGGGGCACCATCACCAGAGCATCGCCGGAGAAC
* **
11760 CTGACCGACGGCATTGGGGTTCCGCCGATCAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
65 CTGATCGACGGCATTGGGGTTCCGATGATC-GGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
* * * * *
11825 GGGTGCTGGTACTTGGCCCTTATGTTAGCCCCCTATCCCTCATCAAACCTTGGGTACTCACACCC
129 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
11890 CCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCAGTAGCCATTAAAGTGTCTGGAATGGGGA
194 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* *
11955 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTAGTTGAATTTTTTTTTGCAT
259 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTGGCAT
* * * *
12019 GCCAACAAAATACAAGCATCACATCTACCAAGCTTGGGGCCAAAACCCCTTCCGAAAAAATTTTA
324 GCCAACAAAATACAAGAATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
* * * *
12084 AAAAATCTCGAACAGCATAAAGTTTCAAAAATCGTGAAAAAATAGAAAACGAGTCATCTTGCCAT
389 AAAAATCTCGAACCGGAAAAAGTTTCAAAAATCGTG-AAAAATAGAAAACGAGTCGTCTTGCCAT
* *
12149 GAAACTTCACGTGAAGGCTTAAGGGA-CATTGCATGAATTTACAAGCCATAAAAATGGCTTTGGC
453 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
12213 ATGCAGAAATATGAAGATG-G-CT-AACCCACCTACCACCCTATCGATCCA-GGCTTGCGCATCC
518 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
*
12274 CGTCTCTCTGGCCGGCATAGTGCCCACCCGCCTGCCCGCTCGTTTCATCGGTTGGCTTAGGCATA
583 CGTCTCTCTGGCCGACATAGTG-----CCGCCTGCCCGCTCGTTTCATCGGTTGGCTTAGGCATA
*
12339 CGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCGACAGTAGGATTGACAGCAT-
643 CGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCGACAGCAGGATTGACAGCATG
* **
12403 -AGAGGGGGCCCCGACCGATCCCCGGCTTGCGCAT-CCGCCTTTCTGGCCGACTGAGCG-CCGCA
708 CAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCA
*
12465 CGCGCTCGTTTCATGGTTTGACTTACGG-ATACGGAGTTCATTCTCAGTCTAAGCATACGGAGTT
773 --CGCTCGTTTCATGGTTTGACTTA-GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* *
12529 CATTCCCAGTGTAAGATCAGACCGGA---ATGGTTGCGGCAGCACATGCTGGG--C
835 CATTCCCAGTCTAAGATCAGACTGGACCGATGGTTGCGGCAGCACATGCTGGGCTC
* * * * ** * *
12580 GGGCATGTGCTGGTGCTGTATTTTTCTTCGTCGAGGTA-CATCGTCAGAGTATCGCAGGAGAACC
1 GGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCACCAGAGCATCGCCGGAGAACC
* *
12644 TGATCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
66 TGATCGACGGCATTGGGGTTCCGATGATC-GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
* * *
12709 GGTGCTGGTACTTGGCCATTATATTGG--CCCTATCCCTCATCAAACGTCAAGAACTCACA-CCC
130 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* **
12771 CTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGTTATTAAAGTGTCTGAAATGGGGA
195 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CAGTAGCCATTAAAGTGTCTGAAATGGGGA
12836 CACTTTTTTCAAATGGTCAC-AAATCTTGTA-ACTTCGAGTTTTTTAGCTGAATTTTTTTTGTGC
259 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTTAGCTGAATTTTTTTTG-GC
* ** * *
12899 ATGCCAACAAAATATAAGAATCACGTCTAAGAAGTTGGGGGCCAAAACTCCCTCCGAAAAAATTT
322 ATGCCAACAAAATACAAGAATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* * * * ** * *
12964 TAAAAAATCCCGAACTGTAAAAAGTTTCGAAAATTTTTAAAAATAGAAAACGAGTCGTGTTGCCA
387 TAAAAAATCTCGAACCGGAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
* *
13029 TGAAGCTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCGTTGG
452 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * *
13094 CACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCACGGCTTGCGCATC
517 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* *
13159 CCGTCTCTCTGGCCGGCATAGTGCCCACCCGCCTGCCCGCTCGTTTCATCGGTTGGCTTAGGAAT
582 CCGTCTCTCTGGCCGACATAGTG-----CCGCCTGCCCGCTCGTTTCATCGGTTGGCTTAGGCAT
* * *
13224 ACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGACAGTAGGATTGACAGCAC
642 ACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCGACAGCAGGATTGACAGCAT
** * * **
13289 ATAGAGGGGGCCCCGACCGATCCCCGGCTTGCGCATCCTGCCTTTCTGGCCGACTGAGCGCCCGC
707 GCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGC
* * *
13354 ACGCTCGTTTCATGGTTTGACTTACGAATACGGAGTTCATTCTCAGTCTAAGCATACGGAGTTCA
772 ACGCTCGTTTCATGGTTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
13419 TTCCCAGTCTAAGATCAGACTGGACCGATGGTTGCGGCAGCACATGCTGGGCTC
837 TTCCCAGTCTAAGATCAGACTGGACCGATGGTTGCGGCAGCACATGCTGGGCTC
* * * *
13473 GGGCATGTGCTGGTGCTGTATTTTTCTTCACCAGGTCACCATCACCAGAGCATCGCCGGAGAACC
1 GGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCACCAGAGCATCGCCGGAGAACC
* ** * *
13538 TGATCGACGGCATTGGGGTTCCGATGATTGGGGGTTTTGGGGGGTGTGCCGTACATGATGTGTGA
66 TGATCGACGGCATTGGGGTTCCGATGATCGGGGG--CCGGGGGGTGTG-CGCACATGATGTGCGA
**
13603 T-GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAATTTCGAGAACTCACAC
128 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC-AAACCTCGAGAACTCACAC
*
13667 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTAAAATGG
192 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CAGTAGCCATTAAAGTGTCTGAAATGG
* * * * *
13732 GCACACTTTGTTCAAATGGTCACAAAATCTTGAACACTTTGAGTTTTTGGCTGAATTTTTTTTGG
256 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTGG
* * *
13797 CATGCCAGCAAATATACAAGAATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTCCAAAAAAAA
321 CATGCCAACAAA-ATACAAGAATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-GAAAAAA
* * * ** *
13862 TTTAAAAAAATCTCAAACCGGAAAAATTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGTCTTG
384 TTTTAAAAAATCTCGAACCGGAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* *
13927 CCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTAACAAGCCATAAAAAATGGCA
449 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAAATGGCA
** * * *
13992 TTGGCACACAGAAATA-AAAGATGTCCCTAAACCCACCTACC-CCCTATCGATCCACGGCTTGCA
513 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
14055 CATCTCGTCTCTCTGGTCGACGTAGTG-C-CC-GCCCGGTCGTTTCGTCGGTTGGCTTAGGCATA
578 CATCCCGTCTCTCTGGCCGACATAGTGCCGCCTGCCCGCTCGTTTCATCGGTTGGCTTAGGCATA
* * * ** ** * * * *
14117 CGGAGTTAATTTCCAGTCTAAGGTTGGACAAGATCAAGGGTTGTGGCAGCAGGATTGGCAGCATG
643 CGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCGACAGCAGGATTGACAGCATG
* ** * * * *
14182 CAGAGGGGGACCTGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTAGACGGCTGAGAGCCCGCA
708 CAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCA
* * * * * *
14247 CGCTTGTTTTATGGGTTAACTTAGGCATACGGAGTTCATTCCCATTCTAAGCATACGAAGTTCAT
773 CGCTCGTTTCATGGTTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
** * ** * * * * *
14312 TCATAGTTTAAGATTGGACCGGATCGAGGGTTACGGCAGCATATGCTGGGCTC
838 TCCCAGTCTAAGATCAGACTGGACCGATGGTTGCGGCAGCACATGCTGGGCTC
*
14365 GGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCTGGAGCATC
1 GGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCA-C----CA------GAGCATC
*
14430 GCCGGAGAACCTGATCGACGGCAATGGGGTTCC-ATCGATCGGGGGGGCCGGGGAGGGTGTGCGC
55 GCCGGAGAACCTGATCGACGGCATTGGGGTTCCGAT-GATC--GGGGGCC-GGG-GGGTGTGCGC
* * * *
14494 ACATGATGTGCAATGGGTGCTGGTACTTGGCTCTTATATTGGCCCCCTATCCGTCATCAAACCAC
115 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
14559 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAG
180 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC-AGTAGCCATTAAAG
*
14624 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTTAGCTG
244 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * * * *
14689 AA-TATTTTTGTGCATGCCAAAAAAATTACAAGGATCAGGTCTACCAAGTTTGGGGCCAGAACTC
309 AATTTTTTTTG-GCATGCCAACAAAA-TACAAGAATCACGTCTACCAAGTTTGGGGCCAAAACTC
* * * * * * *
14753 CTTCCAAAAAAATTTTAAAAAATCCCGAACAGCAAAATGTTTCAAAATTTGTGAAAAATAGAAAA
372 CTTCCGAAAAAATTTTAAAAAATCTCGAACCGGAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
* * *
14818 CGAGTTGTCTTGCCATGAAACTTCACGTAAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCA
437 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* *
14883 TAAAAATGGCATTGGCATGCAGAAAAATGAAGATGTGCCTAAACCCACCTACCA-CCTATTGATC
502 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * * *
14947 CACGGCTTGCGCATCCCGTCTCTCTGGCC-AGCGTAGTGCCCGCCCGCCCACTCGTGTCGTCGGT
567 CACGGCTTGCGCATCCCGTCTCTCTGGCCGA-CATAGTG-CCGCCTGCCCGCTCGTTTCATCGGT
* * ** * * *
15011 TGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATTGGACCGGA-CTGAGAGTTGC-AGTAGC
630 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATC-GAGGGTTGCGA-CAGC
* * * * **
15074 AGGATCGACAGCATGCAAAGGGGGACCC-AGTCGATCCCCGGCTTGCGTATCCCGTGCCTCTGGC
693 AGGATTGACAGCATGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * * *
15138 CGGCTGAGCGCCCGCATGCTCATTTCATGGTTTGACTTAGGCATACAGAGTTCATTCCCAGTCTA
757 CGACTGAGCGCCCGCACGCTCGTTTCATGGTTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * ** * *
15203 ATCATATGGAGTTCATCCCCAGTCTAAGATCAGACTGGATTGAGGGTTGCGGTAGCACATGCTGG
822 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGATGGTTGCGGCAGCACATGCTGG
15268 GCTC
887 GCTC
* * * * * * *
15272 AGACATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCGAAGAACC
1 GGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCACCAGAGCATCGCCGGAGAACC
* * *
15337 TGACCGACGGCATTGGGGTTCCGGTGATCGGGGGACCGGGGGGGGTGCGCACATGATGTGCGATG
66 TGATCGACGGCATTGGGGTTCCGATGATCGGGGG-CCGGGGGGTGTGCGCACATGATGTGCGATG
*
15402 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAACCC
130 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
*
15467 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGA
195 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * * *
15532 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGGGTTCTTATCTTAATTTTTTTAT-GCA
259 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-TGGCA
* * *
15596 TGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTT
323 TGCCAAC-AAAATACAAGAATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* * * * * *
15661 TAAAAAATCTCGAACTGTAAAAAGTTTCAAAAAT-GTGAAAAAAAGAAAACAAGTCATCTTTCCA
387 TAAAAAATCTCGAACCGGAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
* *
15725 TGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGG
452 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
*
15790 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGACCCACGGCTTGCGCATC
517 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * * *
15855 CCGTCTCTTTGGCCGGCATACTGCCCTCCCGCCCGCCTACCCGTTCGTTTCGTCGGTTGGCTTAG
582 CCGTCTCTCTGGCCGACATA--G---T---G-CCGCCTGCCCGCTCGTTTCATCGGTTGGCTTAG
* *
15920 GCATACAGAGTTCATTCCCAATCTAAGAT
638 GCATACGGAGTTCATTCCCAGTCTAAGAT
15949 TGGACCAGAC
Statistics
Matches: 4473, Mismatches: 497, Indels: 274
0.85 0.09 0.05
Matches are distributed among these distances:
857 31 0.01
858 29 0.01
859 84 0.02
860 118 0.03
861 236 0.05
862 163 0.04
863 82 0.02
864 1 0.00
865 4 0.00
867 1 0.00
868 2 0.00
870 1 0.00
871 3 0.00
873 1 0.00
874 2 0.00
875 1 0.00
877 3 0.00
878 1 0.00
879 8 0.00
880 47 0.01
881 144 0.03
882 141 0.03
883 113 0.03
884 34 0.01
885 48 0.01
886 288 0.06
887 26 0.01
888 121 0.03
889 22 0.00
890 5 0.00
891 108 0.02
892 422 0.09
893 583 0.13
894 131 0.03
895 133 0.03
896 107 0.02
897 17 0.00
898 16 0.00
899 93 0.02
900 110 0.02
901 197 0.04
902 50 0.01
903 225 0.05
904 194 0.04
905 54 0.01
906 4 0.00
907 269 0.06
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (890 bp):
GGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCACCAGAGCATCGCCGGAGAACC
TGATCGACGGCATTGGGGTTCCGATGATCGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTGGCATGC
CAACAAAATACAAGAATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
AAATCTCGAACCGGAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
CTCTCTGGCCGACATAGTGCCGCCTGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTC
ATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCGACAGCAGGATTGACAGCATGCAGAGGGG
GACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTT
TCATGGTTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
TAAGATCAGACTGGACCGATGGTTGCGGCAGCACATGCTGGGCTC
Found at i:15598 original size:893 final size:890
Alignment explanation
Indices: 11629--15975 Score: 5615
Period size: 892 Copynumber: 4.9 Consensus size: 890
11619 GTTGACTTAG
* * * *
11629 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-TCAGACCGATGGTTGTGGCAGCGCATGCT-G
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGACCGATGGTTGCGGCAGCACATGCTGG
* ** * *
11692 GCTCGGGCATGTGCTGGTG-CGTATTTTTTCTTCGCCGGGGCACCATCGTCGGAGTATCACTGGA
65 GCTCGGGCATGTGCTGGTGCCGTA-TTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCGGA
* ** *
11756 GAACCTGACCGACGGCATTGGGGTTCCGCCGATCAGGGGGCCGGGGGGTGTGCGCACATGATGTG
129 GAACCTGATCGACGGCATTGGGGTTCCGATGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * * * *
11821 CGATGGGTGCTGGTACTTGGCCCTTATGTTAGCCCCCTATCCCTCATCAAACCTTGGGTACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
11886 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTG-CAGTAGCCATTAAAGTGTCTGGAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
11950 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT-TTAGTTGAATTTTTTTT
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTTAGCTGAATTTTTTTG
* * * * *
12014 TGCATGCCAACAAAATACAAGCATCACATCTACCAAGCTTGGGGCCAAAACCCCTTCCGAAAAAA
389 TGCATGCCAAAAAAATACAAGAATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * *
12079 TTTTAAAAAATCTCGAACAGCATAAAGTTTCAAAAATCGTGAAAAAATAGAAAACGAGTCATCTT
454 TTTTAAAAAATCTCGAACAGCAAAAAGTTTC-AAAATTGTG-AAAAATAGAAAACGAGTCGTCTT
* *
12144 GCCATGAAACTTCACGTGAAGGCTTAAGGGA-CATTGCATGAATTTACAAGCCATAAAAATGGCT
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
12208 TTGGCATGCAGAAATATGAAGATG-G-CT-AACCCACCTACCACCCTATCGATCCA-GGCTTGCG
582 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA-CCTATCGATCCACGGCTTGCG
* *
12269 CATCCCGTCTCTCTGGCCGGCATAGTGCCCACCCGCCTGCCCGCTCGTTTCATCGGTTGGCTTAG
646 CATCCCGTCTCTCTGGCCGGCATAGTG--C-CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
** * *
12334 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCGACAGTAGGATTGACA
708 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTGCGACAGCAGGATTGACA
*
12399 GCAT-AGAGGGGGCCCCGACCGATCCCCGGCTTGCGCATCC-GCCTTTCTGGCCGACTGAGCG-C
773 GCATCAAAGGGGGCCCCGACCGATCCCCGGCTTGCGCATCCTGCC-TTCTGGCCGACTGAGCGCC
*
12461 CGCACGCGCTCGTTTCATGGTTTGACTTACGG-ATACGGAGTTCATTCTCAGTCTAA
837 CGCA--CGCTCGTTTCATGGTTTGACTTA-GGCATACGGAGTTCATTCCCAGTCTAA
* *
12517 GCATACGGAGTTCATTCCCAGTGTAAGATCAGACCGGA---ATGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGATGGTTGCGGCAGCACATGCTGGG
* * * ** * * * *
12579 --CGGGCATGTGCTGGTGCTGTATTTTTCTTCGTCGAGGTA-CATCGTCAGAGTATCGCAGGAGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCGGAGA
* *
12641 ACCTGATCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
131 ACCTGATCGACGGCATTGGGGTTCCGATGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* * *
12706 ATGGGTGCTGGTACTTGGCCATTATATTGG--CCCTATCCCTCATCAAACGTCAAGAACTCACA-
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* **
12768 CCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGTTATTAAAGTGTCTGAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
12833 GGACACTTTTTTCAAATGGTCAC-AAATCTTGTA-ACTTCGAGTTTTTTAGCTGAATTTTTTTTG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTCTTAGCTGAA-TTTTTTTG
* * ** * *
12896 TGCATGCCAACAAAATATAAGAATCACGTCTAAGAAGTTGGGGGCCAAAACTCCCTCCGAAAAAA
389 TGCATGCCAAAAAAATACAAGAATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * * * *
12961 TTTTAAAAAATCCCGAACTGTAAAAAGTTTCGAAAATTTTTAAAAATAGAAAACGAGTCGTGTTG
454 TTTTAAAAAATCTCGAACAGCAAAAAGTTTC-AAAATTGTGAAAAATAGAAAACGAGTCGTCTTG
* *
13026 CCATGAAGCTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCGT
518 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
13091 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCACGGCTTGCGC
583 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC-CTATCGATCCACGGCTTGCGC
* *
13156 ATCCCGTCTCTCTGGCCGGCATAGTGCCCACCCGCCTGCCCGCTCGTTTCATCGGTTGGCTTAGG
647 ATCCCGTCTCTCTGGCCGGCATAGTG--C-CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* ** * * *
13221 AATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGACAGTAGGATTGACAG
709 CATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTGCGACAGCAGGATTGACAG
13286 CA-CATAGAGGGGGCCCCGACCGATCCCCGGCTTGCGCATCCTGCCTTTCTGGCCGACTGAGCGC
774 CATCA-A-AGGGGGCCCCGACCGATCCCCGGCTTGCGCATCCTGCC-TTCTGGCCGACTGAGCGC
* * *
13350 CCGCACGCTCGTTTCATGGTTTGACTTACGAATACGGAGTTCATTCTCAGTCTAA
836 CCGCACGCTCGTTTCATGGTTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
13405 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGATGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGATGGTTGCGGCAGCACATGCTGGG
* ** * * * *
13470 CTCGGGCATGTGCTGGTGCTGTATTTTTCTTCACCAGGTCACCATCACCAGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCGGAGA
* *** *
13535 ACCTGATCGACGGCATTGGGGTTCCGATGATTGGGGGTTTTGGGGGGTGTGCCGTACATGATGTG
131 ACCTGATCGACGGCATTGGGGTTCCGATGATCGGGGG-GCCGGGGGGTGTG-CGCACATGATGTG
* **
13600 TGAT-GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAATTTCGAGAACTCA
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC-AAACCTCGAGAACTCA
* *
13664 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTAAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * * * *
13729 TGGGCACACTTTGTTCAAATGGTCACAAAATCTTGAACACTTTGAGTTTTTGGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTTAGCTGAATTTTTTT
* * * *
13794 -TGGCATGCCAGCAAATATACAAGAATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTCCAAAA
388 GT-GCATGCCA-AAAAAATACAAGAATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-GAA
* * * * * * * *
13858 AAAATTTAAAAAAATCTCAAACCGGAAAAATTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGT
450 AAAATTTTAAAAAATCTCGAACAGCAAAAA-GTTTCAAAATTGTGAAAAATAGAAAACGAGTCGT
* *
13923 CTTGCCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTAACAAGCCATAAAAAAT
514 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAAAT
** * * *
13988 GGCATTGGCACACAGAAATA-AAAGATGTCCCTAAACCCACCTACCCCCTATCGATCCACGGCTT
578 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTATCGATCCACGGCTT
* * * * *
14052 GCACATCTCGTCTCTCTGGTCGACGTAGTG-CCCGCCCG---G-TCGTTTCGTCGGTTGGCTTAG
643 GCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * ** * * * *
14112 GCATACGGAGTTAATTTCCAGTCTAAGGTTGGACAAGATCAAGGGTTGTGGCAGCAGGATTGGCA
708 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTGCGACAGCAGGATTGACA
* * * ** * * * * * *
14177 GCATGCAGAGGGGGACCTGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTAGACGGCTGAGAGC
773 GCAT-CAAAGGGGGCCCCGACCGATCCCCGGCTTGCGCATCCTG-CCTTCTGGCCGACTGAGCGC
* * * * *
14242 CCGCACGCTTGTTTTATGGGTTAACTTAGGCATACGGAGTTCATTCCCATTCTAA
836 CCGCACGCTCGTTTCATGGTTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * ** * * * * *
14297 GCATACGAAGTTCATTCATAGTTTAAGATTGGACCGGATCGAGGGTTACGGCAGCATATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGATGGTTGCGGCAGCACATGCTGGG
14362 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCTGGAGC
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCA----T----C
*
14427 ATCGCCGGAGAACCTGATCGACGGCAATGGGGTTCC-ATCGATCGGGGGGGCCGGGGAGGGTGTG
123 A---CCGGAGAACCTGATCGACGGCATTGGGGTTCCGAT-GATC-GGGGGGCC-GGG-GGGTGTG
* * *
14491 CGCACATGATGTGCAATGGGTGCTGGTACTTGGCTCTTATATTGGCCCCCTATCCGTCATCAAAC
181 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* *
14556 CACGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTA
246 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
14621 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTTAG
311 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTTAG
* * * *
14686 CTGAATATTTTTGTGCATGCCAAAAAAATTACAAGGATCAGGTCTACCAAGTTTGGGGCCAGAAC
376 CTGAATTTTTTTGTGCATGCCAAAAAAA-TACAAGAATCACGTCTACCAAGTTTGGGGCCAAAAC
* * *
14751 TCCTTCCAAAAAAATTTTAAAAAATCCCGAACAGCAAAATGTTTCAAAATTTGTGAAAAATAGAA
440 TCCTTCCGAAAAAATTTTAAAAAATCTCGAACAGCAAAAAGTTTCAAAA-TTGTGAAAAATAGAA
* * *
14816 AACGAGTTGTCTTGCCATGAAACTTCACGTAAAGGCCTAAGGGACCATTGTATGAATTTACAAGC
504 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* *
14881 CATAAAAATGGCATTGGCATGCAGAAAAATGAAGATGTGCCTAAACCCACCTACCACCTATTGAT
569 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTATCGAT
* * * *
14946 CCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTG-CCCGCCCGCCCACTCGTGTCGTCGG
634 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCCGCCCGCCCGCTCGTTTCGTCGG
* * * *
15010 TTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATTGGACCGGA-CTGAGAGTTGC-AGTAG
699 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGATC-GAGGGTTGCGA-CAG
* * * *
15073 CAGGATCGACAGCATGCAAAGGGGGACCC-AGTCGATCCCCGGCTTGCGTATCCCGTGCC-TCTG
762 CAGGATTGACAGCAT-CAAAGGGGGCCCCGA-CCGATCCCCGGCTTGCGCAT-CC-TGCCTTCTG
* * * *
15136 GCCGGCTGAGCGCCCGCATGCTCATTTCATGGTTTGACTTAGGCATACAGAGTTCATTCCCAGTC
823 GCCGACTGAGCGCCCGCACGCTCGTTTCATGGTTTGACTTAGGCATACGGAGTTCATTCCCAGTC
15201 TAA
888 TAA
* * * ** * *
15204 TCATATGGAGTTCATCCCCAGTCTAAGATCAGACTGGATTGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGATGGTTGCGGCAGCACATGCTGGG
* * * *
15269 CTCAGACATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCGAAGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCGGAGA
* * * *
15334 ACCTGACCGACGGCATTGGGGTTCCGGTGATCGGGGGACCGGGGGGGGTGCGCACATGATGTGCG
131 ACCTGATCGACGGCATTGGGGTTCCGATGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
*
15399 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAA
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
15464 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * * *
15529 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGGGTTCTTATCTTAATTTTTTTATG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTTAGCTGAATTTTTTTGTG
* * *
15594 CATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAAT
391 CATGCCAA-AAAAATACAAGAATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * * * * * *
15659 TTTAAAAAATCTCGAACTGTAAAAAGTTTCAAAAATGTGAAAAAAAGAAAACAAGTCATCTTTCC
455 TTTAAAAAATCTCGAACAGCAAAAAGTTTCAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCC
* *
15724 ATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTG
520 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
*
15789 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGACCCACGGCTTGCGCAT
585 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA-CCTATCGATCCACGGCTTGCGCAT
* * *
15854 CCCGTCTCTTTGGCCGGCATACTGCCCTCCCGCCCGCCTACCCGTTCGTTTCGTCGGTTGGCTTA
649 CCCGTCTCTCTGGCCGGCATAGTG--C-CCCGCCCG----CCCGCTCGTTTCGTCGGTTGGCTTA
* * * * * *
15919 GGCATACAGAGTTCATTCCCAATCTAAGATTGGACCAGACCGATGGTTGCGGCAGCA
707 GGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTGCGACAGCA
15976 CTAGTTGGGC
Statistics
Matches: 3034, Mismatches: 342, Indels: 153
0.86 0.10 0.04
Matches are distributed among these distances:
879 8 0.00
880 47 0.02
881 133 0.04
882 149 0.05
883 109 0.04
884 34 0.01
885 46 0.02
886 142 0.05
887 1 0.00
888 150 0.05
889 21 0.01
890 5 0.00
891 24 0.01
892 393 0.13
893 366 0.12
894 63 0.02
895 43 0.01
896 56 0.02
897 23 0.01
898 16 0.01
899 98 0.03
900 103 0.03
901 206 0.07
902 59 0.02
903 215 0.07
904 202 0.07
905 49 0.02
906 1 0.00
907 267 0.09
908 4 0.00
909 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (890 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGATGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCGGAGA
ACCTGATCGACGGCATTGGGGTTCCGATGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTTAGCTGAATTTTTTTGTG
CATGCCAAAAAAATACAAGAATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
TTAAAAAATCTCGAACAGCAAAAAGTTTCAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTATCGATCCACGGCTTGCGCATCC
CGTCTCTCTGGCCGGCATAGTGCCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
AGTTCATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTGCGACAGCAGGATTGACAGCATCAAA
GGGGGCCCCGACCGATCCCCGGCTTGCGCATCCTGCCTTCTGGCCGACTGAGCGCCCGCACGCTC
GTTTCATGGTTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:16688 original size:714 final size:716
Alignment explanation
Indices: 15205--18080 Score: 3958
Period size: 714 Copynumber: 4.1 Consensus size: 716
15195 CCAGTCTAAT
* * * ** ** *
15205 CATATGGAGTTCATCCCCAGTCTAAGATCAGACTGGATTGAGGGTTGCGGTAGCACATGCTGGGC
1 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * ** ** *
15270 TCAGACATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCGAAGAA
66 TCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTC-GAGCATCGTCGGAGAA
* * ** * * *
15335 CCTGACCGACGGCATTGGGGTTCCGGTGATCGGGGGACCGGGGGGG-GTGCGCACATGATGTGCG
130 CCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTCTGCGCACATGATGTGCA
15399 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAA
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC-A
* *
15464 CCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATG
259 CCCCATTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * * *
15528 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGGGTTCTTATCTTAATTTTTTTAT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * *
15593 GCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
389 GCATGCCAACAAAAATACAAGGACCACGTCCACCAAGTTTGGGACCAAAACT-CTACTGAAAAAA
* * * * * *
15658 TTTTAAAAAATCTCGAACTGTAAAAAGTTTCAAAAAT-GTGAAAAA-AAGAAAACAAGTCATCTT
453 TTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAA-AAACCGAGTCCTCTT
* * *
15721 TCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
15786 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGACCCACGGCTTGCG
582 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
15851 CATCCCGTCTCTTTGGCCGGCATACTGCCCTCCCGCCCGCCTACCCGTTCGTTTCGTCGGTTGGC
647 CATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCTACCCGCTCGTTTCGTCGGTTGGC
15916 TTAGG
712 TTAGG
* * * * *
15921 CATACAGAGTTCATTCCCAATCTAAGATTGGACCAGACCGATGGTTGCGGCAGCAC-TAGTTGGG
1 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACAT-GCTGGG
* * * * *
15985 CTCGGGCATGTGCTGGTGCTGTATTTTTCTTCGTCGAGGTACCATCGTCAGAGCATCGTAGGAGA
65 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTC-GAGCATCGTCGGAGA
* * * *
16050 ACCTGATCGGTGGCATTGGGGTTCTGACGATCGGGGGGGCC-GGGGGGTCTGCGCACATGATGTG
129 ACCTGACCGGCGACATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTCTGCGCACATGATGTG
*
16114 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGGAGAACTCAC
193 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
16179 ACCCCATT-AAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAAT
258 ACCCCATTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
16243 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGGTGAATTTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
16308 TGCATGCCAACAAAAATACAAGGACCACGTCCACCATGTTTGGGACGAAAACTC-AC-GAAAAAA
388 TGCATGCCAACAAAAATACAAGGACCACGTCCACCAAGTTTGGGACCAAAACTCTACTGAAAAAA
* *
16371 TTTTAAAAGATCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAAAAACCGAGTCCTCTTG
453 TTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAAAAACCGAGTCCTCTTG
* *
16436 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCAC
518 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
16501 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAACCACAGCTTGCGC
583 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * *
16566 AACCCGTCTCTTTGGCCGGCATAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCT
648 ATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCTACCCGCTCGTTTCGTCGGTTGGCT
16631 TAGG
713 TAGG
* * * *
16635 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCTAGAGTTACGGCAGCACATGCTGGGC
1 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGC
* *
16700 TCAGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCGTCGGAGAA
66 TCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTCG-AGCATCGTCGGAGAA
* * * * *
16765 CCTGATCGGCGACATTGGGGTTCCGACGATCGGGGGGCCGGGGTGGGTGTGCACACATGATATGT
130 CCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGCCGGGG-GGGTCTGCGCACATGATGTGC
* * *
16830 GATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCGTCATCAAACCTCGAGAACTCACA
194 AATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
16895 CCCCCTTAAAAAGCATTTGAGATTTTACA--------GCCAATAGCCATTAAAGTGTCTGAAATG
259 CCCCATTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
16952 GGGACACTTTGTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
17017 GCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTAGGG-CCAAAACTCTTTCTGAAAAA
389 GCATGCCAACAAAAATACAAGGACCACGTCCACCAAGTTT-GGGACCAAAACTC-TACTGAAAAA
* * * * * *
17080 ATTATAAAAAATCCCAAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAA-TGAGTCGTCT
452 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATA-AAAACCGAGTCCTCT
* * * * *
17144 TGCCATTAAACTTTATGTGAAGGCTTAAGGGACCATTGTACGAATTTACAA-CCATTAAAATGGC
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
17208 ATTGGCATGCAGAAATACT-AAGATATG-CTAAACGCACCTACCACCCTATCGATCCACGGCTTG
581 ATTGGCATGCAGAAATA-TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
17271 CGCATCCCGTCTCTCTGGCCGACGTAGT----GCCCGCCCG--T------TCGTTTCTTCGGTTG
645 CGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCTACCCGCTCGTTTCGTCGGTTG
17324 GCTTAGG
710 GCTTAGG
* *
17331 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACA---T--G-
1 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * *
17390 -CAGGCATGTGCTGGTGTCGCATTTTTCTTCGT-TAGG-------G-C-ACCATCGTCGGAGAAC
66 TCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTCGAGCATCGTCGGAGAAC
* *
17444 CTGACCGGTGACATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGGTCTGCGCACATGATGTGCA
131 CTGACCGGCGACATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTCTGCGCACATGATGTGCA
* *
17509 ATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGGAGAACTCACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
17574 CCCATT-AAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
260 CCCATTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
17638 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGGTGAATTTTTTTGTG
325 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* *
17703 CATGCCAACAAAAATACAAGGACCACGTCCACCATGTTTGGGACGAAAACTC-AC-GAAAAAATT
390 CATGCCAACAAAAATACAAGGACCACGTCCACCAAGTTTGGGACCAAAACTCTACTGAAAAAATT
* *
17766 TTAAAAGATCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAAAAACCGAGTCCTCTTGCC
455 TTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAAAAACCGAGTCCTCTTGCC
17831 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
520 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * *
17896 GAATGCAGAAATATGAAGATGTGCCAAAACCCACCTAACACCCTATCGATCCACGGCTTGCGCAT
585 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * *
17961 CCCGTTTCTCTGACCGGCATAGTGCCCGCCCGCCTGTCC-ACCTGCTCGTTTCGTCGATTGGCTT
650 CCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCG-CCTACCCGCTCGTTTCGTCGGTTGGCTT
18025 AGG
714 AGG
* * * *
18028 CATACGGAGTTTATTCCTAGTCTAAGATCGGACC-GGCCTGAGGGTTGCAGCAG
1 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACC-GAGGGTTGCGGCAG
18081 TTGGATCGAC
Statistics
Matches: 1921, Mismatches: 193, Indels: 111
0.86 0.09 0.05
Matches are distributed among these distances:
677 21 0.01
678 125 0.07
679 12 0.01
680 1 0.00
681 1 0.00
682 4 0.00
683 105 0.05
684 36 0.02
685 159 0.08
686 35 0.02
688 2 0.00
689 38 0.02
691 1 0.00
693 1 0.00
696 75 0.04
697 64 0.03
702 1 0.00
704 9 0.00
707 35 0.02
708 158 0.08
709 36 0.02
710 104 0.05
711 4 0.00
713 49 0.03
714 351 0.18
715 89 0.05
716 318 0.17
717 87 0.05
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (716 bp):
CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGC
TCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTCGAGCATCGTCGGAGAAC
CTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTCTGCGCACATGATGTGCAA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCATTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGACCACGTCCACCAAGTTTGGGACCAAAACTCTACTGAAAAAATTT
TAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAAAAACCGAGTCCTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCTACCCGCTCGTTTCGTCGGTTGGCTTAG
G
Found at i:19254 original size:26 final size:26
Alignment explanation
Indices: 19215--19267 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
19205 GTTGACTTAG
*
19215 GCATACGAACTTCATTCCCTGTCTAA
1 GCATACGAACTTCATTCCCAGTCTAA
* *
19241 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGAACTTCATTCCCAGTCTAA
19267 G
1 G
19268 ATCGATCGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACGAACTTCATTCCCAGTCTAA
Found at i:20146 original size:26 final size:26
Alignment explanation
Indices: 20116--20166 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
20106 GTTGACTTAG
* * *
20116 GCATATGGAGTTCATTCCCTGTCTAT
1 GCATACGGAGTTCAGTCCCAGTCTAT
20142 GCATACGGAGTTCAGTCCCAGTCTA
1 GCATACGGAGTTCAGTCCCAGTCTA
20167 AGATCAGACT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.22, C:0.25, G:0.22, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCAGTCCCAGTCTAT
Found at i:21252 original size:897 final size:892
Alignment explanation
Indices: 18343--21774 Score: 4526
Period size: 896 Copynumber: 3.8 Consensus size: 892
18333 GTTCACTTAG
* *
18343 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGC-GACAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GACCGGACCGAGGGTTGCTG-CAGCACATGCTGG
* *** * * * ** *
18407 GCTCT-AGCATGTGCTGGCACCGTACTTTTCTTCGTCAGGGCACCATCACCGGAGCATCGAC-GG
64 GCT-TGGGCATGTGCTGGTGTCGTATTTTTCTT-GCCGGGGCACCATCGTCAGAGCATCG-CTGG
** *** * **
18470 AGAATTTGACCGGCGGCATTACACTTTCGACGATCGAGGGGGCCGGGGGGTGTGTGCACATGATG
126 AGAACCTGACCGGCGGCATTAGGGTTCCGACGATC-A--------GGGGGTGTGCACACATGATG
*
18535 TGTGATGGGTGCTGGTACTTGGCCCTTATATTGG---CCCCCTATCCCTCATCAAACCTCGAGAA
182 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCACCCCCTATCCCTCATCAAACCTCGAGAA
*
18597 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCT
247 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * *
18662 GAAATGGGGACACTTTTTTTAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGATTTT
312 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
*
18727 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCA
377 TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCA
*** *
18792 AAAAAATTTTGCAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTC
442 AAAAAATTTAAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
* *
18857 ATCTTGCGATGAAACTTCACGTGAAGGCTTCAGGGACCATTGTATGAATTTACAAGCCATAAAAA
507 ATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * * *
18922 TGGCATTGGCACGTATAAATATAAAGATGTTCCTAAACCCACCTACCATCCTATCGATCCATGGC
572 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGC
* * * * *
18987 TTGCGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCACCCGT--CCGCCCGCTCATTTCGTCGATT
637 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTACCCACCCGTCCCCGCCCGCTCGTTTCGTCGGTT
** ** * *
19050 GGCTTAGGCATAC-GAGTTTGTTCCCAGTCTAAGATCAAACCAGACCAAAGGTTGTGGCAGCAGG
702 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCAGG
* * * *
19114 ATCGGCAGCACGTAGAGGGGGACCC-AGCTGATCCCCAGCTTGCACATCCCGCCCCTCTGCCCGA
767 ATCGGCAGCATGCAGAGGGGGACCCGA-CTGATCCCCGGCTTGCGCAT-CCGCCCCTCTGCCCGA
* ** * *
19178 TTGAGCGGCCACACGCTCATTTTGTGGGTTGACTTAGGCATACGAACTTCATTCCCTGTCTAA
830 TTGAGCGCCCACACGCTTGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCTGTCTAA
* * *
19241 GCATACGTAGTTCATTCCCAGTCTAAGATCGATCGGACCGAGGGTTG-TGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGACCGGACCGAGGGTTGCT-GCAGCACATGCTGGG
* *
19305 C-TGGAGCATGTGCTGGTGTCGTATTTTTCTT-CATCAGGGCACCATCGTCAGAGCATCG-TCGC
65 CTTGG-GCATGTGCTGGTGTCGTATTTTTCTTGC--CGGGGCACCATCGTCAGAGCATCGCT-GG
* *
19367 AGAACCTGACCGGCGGCATTAGGGTTTCGACGATCGGGGGGCCGGGGGGTGTGCACACATGATGT
126 AGAACCTGACCGGCGGCATTAGGGTTCCGACGAT--------CAGGGGGTGTGCACACATGATGT
19432 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCA---CCTATCCCTCATCAAACCTCGAGAAC
183 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCACCCCCTATCCCTCATCAAACCTCGAGAAC
* * *
19494 TCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCTTTGAAGTGTCTG
248 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
19559 AAATGGGGACACTTTTTTCAAATGGTCACTAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTT
313 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * *
19624 TTTGTGCATGCC-AAAAAAATACAAGGATAACATCTACCAAGTTTGGGGCCAAGAA-TCCTTTCA
378 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA-AACTCCTTCCA
* * ** *
19687 AAAAAATTTTAAAAAAATCTCGAACCGAAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGT
442 AAAAAA-TTTAAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
19752 CATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
506 CATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* *
19817 ATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGG
571 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGG
* *
19882 CTTGCGCATCCCGTCTCTCTGGCCGGCGTACTACCCACCCGTCCGCCCGCCCGCTCGTTTCGTCG
636 CTTGCGCATCCCGTCTCTCTGGCCGACGTAGTACCCACCCGT-C-CCCGCCCGCTCGTTTCGTCG
* * * * *
19947 GTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATGGGACAAGGCCAAGGGTTGCGACAGC
699 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGC
* * * * *
20012 AGGATCGGCAGCATGCATAGGGGGACCTGACTGATCCCCGACTTACGCATCCTGCCCCTCTGGCC
764 AGGATCGGCAGCATGCAGAGGGGGACCCGACTGATCCCCGGCTTGCGCATCC-GCCCCTCTGCCC
* * ** *
20077 GGTTGAGCGCCCGCACG-TTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCTGTCTA
828 GATTGAGCGCCCACACGCTT-GTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCTGTCTA
*
20141 T
892 A
* * *
20142 GCATACGGAGTTCAGTCCCAGTCTAAGATCAGACTGGACCGAGGGTTAC-GCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GACCGGACCGAGGGTTGCTGCAGCACATGCTGGG
* * * * * **
20206 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCCGAGCATCGCCAGAGA
65 CTTGGGCATGTGCTGGTGTCGTATTTTTCTT-GCCGGGGCACCATCGTCAGAGCATCGCTGGAGA
* * ** * * *
20271 ACTTGATCGGTAGCTTTAGGGTTCCAACGATCGGGGGTCAGGGGGTGTGCGCACATGATGTGCGA
129 ACCTGACCGGCGGCATTAGGGTT-C--CGA-C---GATCAGGGGGTGTGCACACATGATGTGCGA
* * *
20336 TGGGTGCTGGTACTTGGCCCTTATACTGG---CCCCGTATCCTTCATCAAACCTCGAGAACTCAC
187 TGGGTGCTGGTACTTGGCCCTTATATTGGCCACCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
20398 ACTCCCTTAAAGAGC-TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
252 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
20462 GGTGACTCTTTTTTCAAATGGTCAC-CAATCTTGTACACTTCAAGTTTTTAGCTG-ATTTGTTTT
317 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT-TTTT
* * *
20525 GTGCAAGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGACAAAACTCCTTCCGAAAA
381 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
* * *
20590 AATTTAAAAAAATC-TGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
446 AATTTAAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCT
* *
20654 TGCCATGAAACTTCACGTGAAGGCTGAAGGGACCATTGTAAGAATTTACAAGCCATAAAAATGGC
511 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
20719 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGC
576 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGC
* * * * * *
20784 GCATCCCGT-TCTTTGGCCGACGTAGTGCCCGCCC-T-CCTGTCCGCTCGTTTAGTCGGTTGGCT
641 GCATCCCGTCTCTCTGGCCGACGTAGTACCCACCCGTCCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * *
20846 TAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAAGATCG
706 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCAGGATCG
* * * *
20911 ACAGCATGCAGAGGGGGACCCGACTGATCCTCGGCTTGCGCATCTCGCCCCTCTGTCCGACTGAG
771 GCAGCATGCAGAGGGGGACCCGACTGATCCCCGGCTTGCGCATC-CGCCCCTCTGCCCGATTGAG
* * * *
20976 CGCCCATACGCTTGTTTTGTGGGTTGACTTACGCATACGGAGTTCATTCCCAGTTTAA
835 CGCCCACACGCTTGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCTGTCTAA
* * * *
21034 GCATATGGAGTTCATTCCCAGTC-AATGATCGGACCAGACCGAGGGTTGCTACAGCACAAGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAA-GATC-GACCGGACCGAGGGTTGCTGCAGCACATGCTGG
* ** *
21098 GCTTGGCCATGTGCTGGTGTCACATTTTTCATTGCCGGGGCACCATCGTCGGAGCATCGCTGGAG
64 GCTTGGGCATGTGCTGGTGTCGTATTTTTC-TTGCCGGGGCACCATCGTCAGAGCATCGCTGGAG
* * *
21163 AACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGTGTGCACACATTATGTGTGATGGGTG
128 AACCTGACCGGCGGCATTAGGGTTCCGACGATCAGGGGGTGTGCACACATGATGTGCGATGGGTG
*
21227 CTGGTACTTGGCCCTTATATTGG---CCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCC
193 CTGGTACTTGGCCCTTATATTGGCCACCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
21289 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
258 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * * *
21354 ACATTTTTCAAATGGTCACAAAATCTTGTACACTTCGCGTTCTTAGCTGAATTTTTTTATGCATG
323 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
** * * *
21419 CCAACGAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGCCTTCCAAAACAATTTTA
388 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTAA
* * *
21484 AAAAATCTTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATG
453 AAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATG
* *
21549 AAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCTATAAAAATGGCATTGGCA
518 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
*
21614 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT-CAGCATCC
583 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGC-GCATCC
* * *
21678 CGTCTCTCTGGCCGACGTAGTACCCGCCCGTCTGCCCGCCCGCTTGTTTCGTCAGTTGGCTTAGG
647 CGTCTCTCTGGCCGACGTAGTACCCACCCGTC--CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
21743 CATACGGAGTTCATTCCCAGTCTAAGATCGGA
710 CATACGGAGTTCATTCCCAGTCTAAGATCGGA
21775 TCGAACTGAT
Statistics
Matches: 2230, Mismatches: 241, Indels: 131
0.86 0.09 0.05
Matches are distributed among these distances:
885 94 0.04
886 74 0.03
887 100 0.04
888 181 0.08
889 24 0.01
890 4 0.00
891 2 0.00
892 221 0.10
893 142 0.06
894 2 0.00
895 52 0.02
896 442 0.20
897 287 0.13
898 82 0.04
899 118 0.05
900 131 0.06
901 250 0.11
902 17 0.01
904 3 0.00
905 2 0.00
908 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (892 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGACCGGACCGAGGGTTGCTGCAGCACATGCTGGGC
TTGGGCATGTGCTGGTGTCGTATTTTTCTTGCCGGGGCACCATCGTCAGAGCATCGCTGGAGAAC
CTGACCGGCGGCATTAGGGTTCCGACGATCAGGGGGTGTGCACACATGATGTGCGATGGGTGCTG
GTACTTGGCCCTTATATTGGCCACCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTAAAAA
AATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAA
CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTC
TCTCTGGCCGACGTAGTACCCACCCGTCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCAGGATCGGCAGCATGCA
GAGGGGGACCCGACTGATCCCCGGCTTGCGCATCCGCCCCTCTGCCCGATTGAGCGCCCACACGC
TTGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCTGTCTAA
Found at i:21892 original size:103 final size:103
Alignment explanation
Indices: 21693--21880 Score: 261
Period size: 103 Copynumber: 1.8 Consensus size: 103
21683 CTCTGGCCGA
* * *
21693 CGTAGTACCCGCCCGTCTGCCCGCCCGCTTGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATT
1 CGTAGTACCCGCCCGTCTGCCCGCCCGCTTATTTCGTCAGTTGGCATAGCCATACGGAGTTCATT
* * *
21758 CCCAGTCTAAGATCGGATCGAACTGATGGTTGCCCGCC
66 CCCAGTCTAAGATCAGACCGAACTGAGGGTTGCCCGCC
* * * *
21796 CGTAGTACCCGCCCGTCTGCCCGCCCG-TTCATTTTGTCGGTTGGCATAGCCATACTGATTTCAT
1 CGTAGTACCCGCCCGTCTGCCCGCCCGCTT-ATTTCGTCAGTTGGCATAGCCATACGGAGTTCAT
*
21860 TCCCAGTCTAAGATTAGACCG
65 TCCCAGTCTAAGATCAGACCG
21881 GATCGAGGGT
Statistics
Matches: 74, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
102 2 0.03
103 72 0.97
ACGTcount: A:0.16, C:0.32, G:0.24, T:0.28
Consensus pattern (103 bp):
CGTAGTACCCGCCCGTCTGCCCGCCCGCTTATTTCGTCAGTTGGCATAGCCATACGGAGTTCATT
CCCAGTCTAAGATCAGACCGAACTGAGGGTTGCCCGCC
Found at i:22033 original size:26 final size:26
Alignment explanation
Indices: 22004--22056 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21994 GTTGACTTAG
*
22004 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
22030 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
22056 G
1 G
22057 ATCGGACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:23723 original size:103 final size:103
Alignment explanation
Indices: 23524--23711 Score: 261
Period size: 103 Copynumber: 1.8 Consensus size: 103
23514 CTCTGGCCGA
* * *
23524 CGTAGTACCCGCCCGTCTGCCCGCCCGCTTGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATT
1 CGTAGTACCCGCCCGTCTGCCCGCCCGCTTATTTCGTCAGTTGGCATAGCCATACGGAGTTCATT
* * *
23589 CCCAGTCTAAGATCGGATCGAACTGATGGTTGCCCGCC
66 CCCAGTCTAAGATCAGACCGAACTGAGGGTTGCCCGCC
* * * *
23627 CGTAGTACCCGCCCGTCTGCCCGCCCG-TTCATTTTGTCGGTTGGCATAGCCATACTGATTTCAT
1 CGTAGTACCCGCCCGTCTGCCCGCCCGCTT-ATTTCGTCAGTTGGCATAGCCATACGGAGTTCAT
*
23691 TCCCAGTCTAAGATTAGACCG
65 TCCCAGTCTAAGATCAGACCG
23712 GATCGAGGGT
Statistics
Matches: 74, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
102 2 0.03
103 72 0.97
ACGTcount: A:0.16, C:0.32, G:0.24, T:0.28
Consensus pattern (103 bp):
CGTAGTACCCGCCCGTCTGCCCGCCCGCTTATTTCGTCAGTTGGCATAGCCATACGGAGTTCATT
CCCAGTCTAAGATCAGACCGAACTGAGGGTTGCCCGCC
Found at i:23864 original size:26 final size:26
Alignment explanation
Indices: 23835--23887 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
23825 GTTGACTTAG
*
23835 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
23861 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
23887 G
1 G
23888 ATCGGACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:25609 original size:26 final size:27
Alignment explanation
Indices: 25558--25611 Score: 83
Period size: 26 Copynumber: 2.0 Consensus size: 27
25548 TTTGACTTAG
25558 GCATACGAAGTTTCATTCCCAATCTAA
1 GCATACGAAGTTTCATTCCCAATCTAA
* *
25585 GCATACGAAG-TTCGTTCCCAGTCTAA
1 GCATACGAAGTTTCATTCCCAATCTAA
25611 G
1 G
25612 ATCAGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 15 0.60
27 10 0.40
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.28
Consensus pattern (27 bp):
GCATACGAAGTTTCATTCCCAATCTAA
Found at i:27309 original size:26 final size:26
Alignment explanation
Indices: 27280--27350 Score: 133
Period size: 26 Copynumber: 2.7 Consensus size: 26
27270 AGGCATACGG
*
27280 AGTTCATTCCCAGTCTAAGCATATGA
1 AGTTCGTTCCCAGTCTAAGCATATGA
27306 AGTTCGTTCCCAGTCTAAGCATATGA
1 AGTTCGTTCCCAGTCTAAGCATATGA
27332 AGTTCGTTCCCAGTCTAAG
1 AGTTCGTTCCCAGTCTAAG
27351 ATCGGACAAG
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (26 bp):
AGTTCGTTCCCAGTCTAAGCATATGA
Found at i:28222 original size:26 final size:26
Alignment explanation
Indices: 28193--28245 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
28183 GTTGACTTAG
28193 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
28219 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
28245 G
1 G
28246 ATCAGCCTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:29820 original size:26 final size:26
Alignment explanation
Indices: 29790--29842 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
29780 GTTGACTTAG
29790 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
29816 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
29842 G
1 G
29843 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:31089 original size:860 final size:867
Alignment explanation
Indices: 29010--31583 Score: 3490
Period size: 895 Copynumber: 2.9 Consensus size: 867
29000 AGGGGCAGCT
* * * **
29010 GCATTTTTCTTCACCGGGGCACCATCTCCGGAGCATCGCCGGAGAACTTGACCGACGGTGTTGTT
1 GCATTTTTCTTCACCGGGGCACCAT-TAC-G-G-AT---CGGAGAACCTAACCGACGGCATTGTT
* * * *
29075 CTGACGATTGGGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCC
59 CCGGCGA-TCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
*
29140 TTTTATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
123 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* *
29205 TTTTACAGGTTCGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACAC-TTTTTCAAATGGTC
188 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
*
29269 ACAAAATCTTGTACACTTCGAGTTTCTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGG
253 ACAAAATCTTGTACACTTCGAGTTTTTAGCT-AATTTTTTTGTGCATGCCAACAAAAATACAAGG
29334 ATCACGTCTACCAAGTTTGGGCCAAAAATCCTTCCGAAAAAA-TTTAAAAAAATCTCGAACCATA
317 ATCACGTCTACCAAGTTTGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAAATCTCGAACC-TA
* *
29398 AAAAGTTTTGAAAATCGTGAAAAATAGAAAACGTGTTGTTTTGTCATGAAACTTCACACGAAGGC
381 AAAAGTTTTGAAAATCGTGAAAAATAGAAAACGTGTTGTTTTGCCATGAAACTTCACGCGAAGGC
*
29463 TTAAGGGACCATTGTATGTATTTACAAGCCATAAAAATGGCATTGGCACCTAGAAATATGAAGAT
446 TTAAGGGACCATTGTATGTATTTACAAGCCATAAAAATGGCATTGGCAGC-AGAAATATGAAGAT
* * *
29528 GTGCCTAAACCCACCTACCACCCTATCCATCCACGGCTTGCGCATCCCGTCTTTCAGGTCGGCGT
510 GTGCCTAAACCCACCTACCACCCTATCCATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT
* * *
29593 AGTGCCCGCCCGCCCGTTCATTTCGTCAGTTGGTTTAGGCATTCGGAGTTCATTCCCAGTCTAAG
575 AGTGCCCGCCCGCCCGCTCATTTCGTCAGTTGGCTTAGGCATTTGGAGTTCATTCCCAGTCTAAG
** *
29658 ATCAGACCAGACCGAGGGTTACGACAGCAGGATTGACAGCACGTAGAGGGGGAACCGATCGATCC
640 ATCAGACCAGACCGAGGGTTGTGACAGCAGGATTGGCAGCACGTAGAGGGGGAACCGATCGATCC
* * * *
29723 TCGACTTACGCACACCGCCCTTCTGGCAGGCTGAGCGCCCACACGCTCGTT-TCATGGGTTGACT
705 TCGGCTTACGCATACCGCCCTTCTGGCAGGCTGAGCGCCCGCACGCTCGTTCT-GTGGGTTGACT
*
29787 TAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
769 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-GA--T-A----CAG-C-AAGA--AGACC-
*
29852 GAGCAAGGGTTGCGACAACACATGCTAGGCTCGAGCATGTGCTGGTGCT
821 G-G-AAGGGTTGCGACAACACATGCTAGGCTCGAGCATGTGCTGGTGCC
*
29901 GCATTTTTCTTCACCGGGGCACCATTACCGGAGCATCATCGGAGAACCTAACCGACGGCGTTGTT
1 GCATTTTTCTTCACCGGGGCACCATTA-C-G-G----ATCGGAGAACCTAACCGACGGCATTGTT
* * * * *
29966 CCGGCGATTGGGGGGGCCGAGGGGGTTTGCGCACATGATGTGTGATGGCTACTGGTACTTGGCCC
59 CCGGCGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
30031 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
123 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
*
30096 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTC
188 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* *
30161 ACAAAATCTTGTAGCACTTCGAGTTTTTAGCTAAATTTTTTGTGCATGCCAAAAAAAATACAAGG
253 ACAAAATCTTGTA-CACTTCGAGTTTTTAGCTAATTTTTTTGTGCATGCCAACAAAAATACAAGG
*
30226 ATCACCTCTACCAAGTTTGGGGCCAAAAATCCTTACCGAAAAAATTTTAAAAAAATCTCGAACCG
317 ATCACGTCTACCAAGTTT-GGGCCAAAAATCCTT-CCGAAAAAATTTTAAAAAAATCTCGAACC-
**
30291 TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGTGTTGTTTTGCCATGAAACTTCACGCGAAG
379 TAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGTGTTGTTTTGCCATGAAACTTCACGCGAAG
* * *
30356 GCTTAAGGGACCGTTGTATGTATTTACAAGCCATAAAAATGGCATTGGCAGGCAAAAATATGCAG
444 GCTTAAGGGACCATTGTATGTATTTACAAGCCATAAAAATGGCATTGGCA-GCAGAAATATGAAG
30421 ATGTGCCTAAACCCACCTACCACCCTATCCATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
508 ATGTGCCTAAACCCACCTACCACCCTATCCATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* *
30486 GTAGTGCCCGCCCGCCCGCTCATTTCGTCAGTTGGCTTAGGCATTTGGAGTTCATTCCTAGTCCA
573 GTAGTGCCCGCCCGCCCGCTCATTTCGTCAGTTGGCTTAGGCATTTGGAGTTCATTCCCAGTCTA
* * * *
30551 AGATCAGACTAGACCGAGGGTTGTGACAGTAGGATCGGTAGCACGTAGAGGGGGAACCGATCGAT
638 AGATCAGACCAGACCGAGGGTTGTGACAGCAGGATTGGCAGCACGTAGAGGGGGAACCGATCGAT
*
30616 CCTCGGCTTACGCATACCGCCCTTCTGACAGGCTGAGCGCCCGCACGCTCGTTCTGTGGGTTGAC
703 CCTCGGCTTACGCATACCGCCCTTCTGGCAGGCTGAGCGCCCGCACGCTCGTTCTGTGGGTTGAC
* *
30681 TTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-A-A-A-C-CG-A-ACC-G-AGGGTTGCT
768 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGATACAGCAAGAAGACCGGAAGGGTTGCG
* * * *
30735 ACAGCACATGCTGGGCTTGAGCATGTGTTGGTGCC
833 ACAACACATGCTAGGCTCGAGCATGTGCTGGTGCC
* ** *
30770 GTATTTTTCTTCGTCGGGGCACCA-T-C-G-TCGGAGAACCTAACCGGCGGCATTGGGGTTCCGG
1 GCATTTTTCTTCACCGGGGCACCATTACGGATCGGAGAACCTAACCGACGGCATT---GTTCCGG
* * *
30831 CGATCGGGGGGGCCGGGGGTGTGTGTGCACATGGTGTGCAATGGGTGCTGGTACTTGGCCCTTAT
63 CGATCGGGGGGGCCGGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
*
30896 ATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCGTTTGAGATTTT
127 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
*
30960 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAA
192 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* * *
31025 AATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTATGCAAGCCAACAAAAATACAAGGATCA
257 AATCTTGTACACTTCGAGTTTTTAGCT-AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
* * * *
31090 CGTCTACCAAATTTAGGGCCAAAACTCCTTCCGAAAAAATTGT-AAAAAATCTCGAAACTCAAAA
321 CGTCTACCAAGTTT-GGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAAATCTCGAACCT-AAAA
** * * *
31154 AGTTTTGAAAATCGTGAAAAATA-AAAGACAAGTCGTGTTGCCATGAAACTTCACGTGAAGGCTT
384 AGTTTTGAAAATCGTGAAAAATAGAAA-ACGTGTTGTTTTGCCATGAAACTTCACGCGAAGGCTT
*
31218 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
448 AAGGGACCATTGTATGTATTTACAAGCCATAAAAATGGCATTGGCA-GCAGAAATATGAAGATGT
* *
31283 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAG
512 GCCTAAACCCACCTACCACCCTATCCATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA-
* * *
31348 TGTCCGCCCGCCCGTCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATATT-GAGTTCATTCCCA
576 -GT--GCCCG--C--CCGCCCGCTCATTTCGTCAGTTGGCTTAGGCAT-TTGGAGTTCATTCCCA
* * * * *
31412 GTCTGAGATCTGACCAGACTGAGGGTTGTGACAGCAGGATTGGCAGCATGCAGAGGGGG-ACTCG
633 GTCTAAGATCAGACCAGACCGAGGGTTGTGACAGCAGGATTGGCAGCACGTAGAGGGGGAAC-CG
** * ** * * * * *
31476 GCCGATCCTCAGCTTGTGCATCCCGTCCC-TCTGGCCGGTTGAGCCCCCGTACGCTCGTTTCATG
697 ATCGATCCTCGGCTTACGCATACCG-CCCTTCTGGCAGGCTGAGCGCCCGCACGCTCG-TTC-TG
*
31540 T--GTTGACTTTGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
759 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
31584 GAGTTCATTC
Statistics
Matches: 1524, Mismatches: 124, Indels: 92
0.88 0.07 0.05
Matches are distributed among these distances:
857 4 0.00
858 215 0.14
859 30 0.02
860 194 0.13
861 64 0.04
862 5 0.00
863 1 0.00
864 1 0.00
865 2 0.00
866 172 0.11
867 10 0.01
868 5 0.00
869 59 0.04
871 1 0.00
874 3 0.00
875 1 0.00
878 1 0.00
880 1 0.00
882 1 0.00
887 1 0.00
890 12 0.01
891 210 0.14
892 75 0.05
893 33 0.02
894 14 0.01
895 407 0.27
896 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (867 bp):
GCATTTTTCTTCACCGGGGCACCATTACGGATCGGAGAACCTAACCGACGGCATTGTTCCGGCGA
TCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
TTGTACACTTCGAGTTTTTAGCTAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
ACCAAGTTTGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAAATCTCGAACCTAAAAAGTTTTG
AAAATCGTGAAAAATAGAAAACGTGTTGTTTTGCCATGAAACTTCACGCGAAGGCTTAAGGGACC
ATTGTATGTATTTACAAGCCATAAAAATGGCATTGGCAGCAGAAATATGAAGATGTGCCTAAACC
CACCTACCACCCTATCCATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC
GCCCGCTCATTTCGTCAGTTGGCTTAGGCATTTGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
CCGAGGGTTGTGACAGCAGGATTGGCAGCACGTAGAGGGGGAACCGATCGATCCTCGGCTTACGC
ATACCGCCCTTCTGGCAGGCTGAGCGCCCGCACGCTCGTTCTGTGGGTTGACTTAGGCATACGGA
GTTCATTCCCAGTCTAAGCATACGATACAGCAAGAAGACCGGAAGGGTTGCGACAACACATGCTA
GGCTCGAGCATGTGCTGGTGCC
Found at i:31581 original size:26 final size:26
Alignment explanation
Indices: 31551--31603 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
31541 GTTGACTTTG
31551 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
31577 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
31603 G
1 G
31604 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:31804 original size:12 final size:12
Alignment explanation
Indices: 31787--31813 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
31777 GTGCTGGTAC
31787 TTGGCCCTTATA
1 TTGGCCCTTATA
31799 TTGGCCCTTATA
1 TTGGCCCTTATA
31811 TTG
1 TTG
31814 TACACTTCGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.15, C:0.22, G:0.19, T:0.44
Consensus pattern (12 bp):
TTGGCCCTTATA
Found at i:32363 original size:26 final size:26
Alignment explanation
Indices: 32333--32385 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
32323 GTTAACTTAG
*
32333 GCATACAAAGTTCATTCCCAGTTTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
***
32359 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
32385 G
1 G
32386 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:32537 original size:782 final size:782
Alignment explanation
Indices: 31029--32587 Score: 2151
Period size: 782 Copynumber: 2.0 Consensus size: 782
31019 TCACAAAATC
* *
31029 TTGTACACTTCGAGTTTTTAGCTGATTTTTTTTATGCAAGCCAACAAAAATACAAGGATCACGTC
1 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCAAGCCAAAAAAAATACAAGGATCACGTC
* * *
31094 TACCAAATTTAGGGCCAAAACTCCTTCCGAAAAAATTGTAAAAAATCTCGAAACTCAAAAAGTTT
66 TACCAAATTTAGGGCCAAAAATCCTTCCGAAAAAATTGTAAAAAATCCCGAAACACAAAAAGTTT
* * *
31159 TGAAAATCGTGAAAAATAAAAGACAAGTCGTGTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
131 TCAAAATCGTGAAAAATAAAAGACAAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
*
31224 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
196 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATAAAGATGTGCCTAA
* *
31289 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGTCCG
261 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCAGACGTAGTGCCCG
* * * * * ** *
31354 CCCGCCCGTCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATATTGAGTTCATTCCCAGTCTGAG
326 CCCGCCCGCCCGCCCACTCGTTTCGTCGATCGGCTGAGCCATACAGAGTTCATTCCCAGTCTAAG
* * * * *
31419 ATCTGACCAGACTGAGGGTTGTGACAGCAGGATTGGCAGCATGCAGAGGGGGACTCGGCCGATCC
391 ATCGGACCAGACTGAGGGTTGTGACAGCAGGATCGGCAACACGCAGAGGGGGACTCGACCGATCC
* * * * * * *
31484 TCAGCTTGTGCATCCCGTCCCTCTGGCCGGTTGAGCCCCCGTACGCTCGTTTCATGTGTTGACTT
456 CCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCCCCCGCACGCTCGTTTCATGGGTTAACTT
* ** * *
31549 TGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAG
521 AGGCATACAAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* * * *
31614 ACCCAGGGTGACGGCAGCACATGCTGGGCATGGGCATGTGCTGGTGTCACATTTTTCTTCCCAGG
586 ACCCAGGGTGACGGCAGCACATACTGGGCATGGGCATGTGCTGGTGCCACATATTTCTTCACAGG
** * * * ** *
31679 GGCACCATCACCAGAGCATTGTCGGAGAACTTGTCTGGTAGCATTAGGGTTACGACGATCGGGGG
651 GGCACCATCACCAGAGCATCATCGAAGAACTTGACCGACAGCATTAGGGTTACAACGATCGGGGG
* * *
31744 GCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT-TGGCCCTTATATTGGCCCTT
716 GCCGAGGGGGTGTGCGCACATGATGTGCGATGGGAGCTGGTA-TGTGACCCTTATATTGGCCCTT
31808 ATA
780 ATA
* *
31811 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTC
1 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCAAGCCAAAAAAAATACAAGGATCACGTC
* * * * ** * *
31876 TCCCAAGTTTGGGGGCAAAAATCCTTCCGAAAATTTTTTTAAAAATCCCGAAACACAAAAAG-TT
66 TACCAAATTTAGGGCCAAAAATCCTTCCGAAAAAATTGTAAAAAATCCCGAAACACAAAAAGTTT
*
31940 TCAATAATCGTGAAAAATAGAAA-ACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
131 TCAA-AATCGTGAAAAATA-AAAGACAAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
* *
32004 GACCATTGTATGAATTTACAAGCCATAGAAATGGCATTGGCATGTAGAAATATAAAGATGTGCCT
194 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATAAAGATGTGCCT
* **
32069 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTAGGTGTAGTGCC
259 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCAGACGTAGTGCC
* * *
32134 CGCCCGTCTGCCCGCCCATTCGTTTCGTCGATCGGCTGAGCCATACAGAGTTCATTCCCAGTCTA
324 CGCCCGCCCGCCCGCCCACTCGTTTCGTCGATCGGCTGAGCCATACAGAGTTCATTCCCAGTCTA
* ** * * *
32199 AGATCGGACC-GAACTGATGGTTGTGGTAGCAGGCTCGGTAACACGTAGAGGGGGAC-CTGACCG
389 AGATCGGACCAG-ACTGAGGGTTGTGACAGCAGGATCGGCAACACGCAGAGGGGGACTC-GACCG
* * * *
32262 ATCCCCGGCTTGCGCATCCGGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTTGTTTCATGGGTTA
452 ATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCCCCCGCACGCTCGTTTCATGGGTTA
* *
32327 ACTTAGGCATACAAAGTTCATTCCCAGTTTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGA
517 ACTTAGGCATACAAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* ** *
32392 CCGGACTGAGGGTTACGGCAGCACATACTGGGC-TCGGGCATGTGCTGGTGCCACATATTTCTTC
582 CCAGACCCAGGGTGACGGCAGCACATACTGGGCAT-GGGCATGTGCTGGTGCCACATATTTCTTC
* * * * * *
32456 ACTGGGGCACCATCGCCGGAGCATCATCGAAGAACTTGACCGACGGCATTGGTGGTTCCAACGAT
646 ACAGGGGCACCATCACCAGAGCATCATCGAAGAACTTGACCGACAGCATTAG-GGTTACAACGAT
* * *
32521 CGGGGGGCC-AGGGGGTGTGTGCACATTATTTGCGATGGGAGCTGGTATGTGACCCTTATATTGG
710 CGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGAGCTGGTATGTGACCCTTATATTGG
32585 CCC
775 CCC
32588 CCTATTCTTC
Statistics
Matches: 675, Mismatches: 95, Indels: 14
0.86 0.12 0.02
Matches are distributed among these distances:
781 9 0.01
782 644 0.95
783 22 0.03
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (782 bp):
TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCAAGCCAAAAAAAATACAAGGATCACGTC
TACCAAATTTAGGGCCAAAAATCCTTCCGAAAAAATTGTAAAAAATCCCGAAACACAAAAAGTTT
TCAAAATCGTGAAAAATAAAAGACAAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATAAAGATGTGCCTAA
ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCAGACGTAGTGCCCG
CCCGCCCGCCCGCCCACTCGTTTCGTCGATCGGCTGAGCCATACAGAGTTCATTCCCAGTCTAAG
ATCGGACCAGACTGAGGGTTGTGACAGCAGGATCGGCAACACGCAGAGGGGGACTCGACCGATCC
CCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCCCCCGCACGCTCGTTTCATGGGTTAACTT
AGGCATACAAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
ACCCAGGGTGACGGCAGCACATACTGGGCATGGGCATGTGCTGGTGCCACATATTTCTTCACAGG
GGCACCATCACCAGAGCATCATCGAAGAACTTGACCGACAGCATTAGGGTTACAACGATCGGGGG
GCCGAGGGGGTGTGCGCACATGATGTGCGATGGGAGCTGGTATGTGACCCTTATATTGGCCCTTA
TA
Found at i:34076 original size:709 final size:703
Alignment explanation
Indices: 32359--35277 Score: 3397
Period size: 744 Copynumber: 4.1 Consensus size: 703
32349 CCCAGTTTAA
* * * * *
32359 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGGCAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGTAGCACATGCTGGG
* * * *
32424 CTCGGGCATGTGCTGGTGCCACATATTTCTTCA-CTGGGGCACCATCGCCGGAGCATCATCGAAG
66 CTCGGGCATGTGCTGGTGCCATATTTTTCTTCATC-GGGGCACCATCGCCGGAGCATCGTCGGAG
* ** * * * *
32488 AACTTGACCGACGGCATTGGTGGTTCCAACGATCGGGGGGCCAGGGGGTGTGTGCACATTATTTG
130 AACCTGACCGACGGCATTGG-GGTTCCGGCGATC----TG---GGGGGTGTGCGCACATGATGTG
* * * * *
32553 CGATGGGAGCTGGTA-TGTGACCCTTATATTGGCCCCCTATTCTTCATCAAACCTCGGGAACTCA
187 CGATGGGTGCTGGTACT-TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
32617 TAGCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAA
251 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAA
* *
32682 TGGGGACACTTTTTTCAAATGGTCACAAAATTTTGTACACTTCAAGTTTTTAGCTGATTTTTTTT
316 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTT
* * * *
32747 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCGTTCCGAAAA
381 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CAAAAATCCTTCCAAAAA
* * *
32812 AATTTTAAAAAATCCCGAACTGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCATCT
445 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCT
* * *
32877 TTCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATAAATTTACAAGCCATAAAAATGGC
510 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** * *
32942 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGTTTGC
575 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGC
* * * * *
33007 GCATCTCGTCTCTTTGGCCGGCGTAGTGCCCGCCCGCCCGCCCCCCCGCTCGTTTCATCAGTTGG
640 GCATCCCGTCTCTCTGGCCAGCGTAGT---CGCCCGCCCG---CCCCGCTCATTTCGTCAGTTGG
33072 CTTAG
699 CTTAG
* * * * * *
33077 GCATACGGAGTTAATTCCCAGTCTAAGATTGGACCAGACCGATGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGTAGCACATGCTGGG
* *
33142 CTCGGGCATGTGTTGGTGCCATATTTTTCTTCATTGGGGCACCATCGCCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCATATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGTCGGAGA
33207 ACCTGA-C--C-G-A-------T--GGC-AT-T---GGGTGTGCGCACATGATGTGCGATGGGTG
131 ACCTGACCGACGGCATTGGGGTTCCGGCGATCTGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* *
33253 CTGGTACATGGCCCTTATACTGGCCCCCTATCCCTCATCAAACCTCGAG-ACGTCACACCCCCTT
196 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC-TCACACCCCCTT
* *
33317 AAAGAGCATTGGAGATTTTACAAGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
260 AAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* *
33382 TTTTTTCAAATGGTCACAAAATTTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
325 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* *
33447 AA-AAAAATACAGGGATCACGTCTACCAAGTTTGGGGACAAAAATTCTTCCAAAAAAATTTTAAA
390 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CAAAAATCCTTCCAAAAAAATTTTAAA
** * * *
33511 AAATCCTAAACTGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATAAA
454 AAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAA
* *
33576 ACTTCACCTGAAGGCTTAAGGG-CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
519 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* * * *
33640 CAGAAATATGAAGATGTGCCTAAACCCACCTGCCACCATATCGATCCAAGGCATGCGCATCCCAT
584 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCGCATCCCGT
33705 CTCTCTGGCCAGCGTAGT-GCCCGCCCG-CCCGCTCATTTCGTCAGTTGGCTTAG
649 CTCTCTGGCCAGCGTAGTCGCCCGCCCGCCCCGCTCATTTCGTCAGTTGGCTTAG
*
33758 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCTAGGGTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGTAGCACATGCTGGG
* * * *
33823 CTCGGGCATGTGCTGGTACCGTATTTTTCTTCGTCGGGGCACCATCGCCTGG-GCATCGTCAGAG
66 CTCGGGCATGTGCTGGTGCCATATTTTTCTTCATCGGGGCACCATCGCC-GGAGCATCGTCGGAG
* * *
33887 AACCTGACCGGCGGCATTGGGGTGT-TGGCGATCGGGGGGGCTGGGGGGGTGTGCCCACATGATG
130 AACCTGACCGACGGCATTGGGGT-TCCGGCGAT--------CT-GGGGGGTGTGCGCACATGATG
* ** *
33951 TGCGATGGGTGCTTGTACTTGGCCCTTATATTGGCCCTTTATCCCTCATCAAACCTTGAGAACTC
185 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * *
34016 ACACCCCCTTAAAGAGTATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTCAA
250 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAA
*
34081 AT-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGATTTTTTT
315 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTT
* **
34145 TGTGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGGCAAAGCTCCTTCCAAAA
380 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGGCAAAAATCCTTCCAAAA
* * *
34210 AAATTTTAAAAAATCCCGAACCGTAAAAA-TTTTCCAAAATCATGAAAAAAAGAAAACGAGTCAT
444 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTT-GAAAATCATGAAAAATAGAAAACGAGTCAT
*
34274 CTTGCCATGAAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATG
508 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
34339 GCATTCGTACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACA-GCT
573 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA-AGGCT
* **
34403 TGCACATCCCGTCTCTCTGGCCAATGTAGTGCCCGCCTGCTCGTCCGCTCTAGCCGGCTGAGCGC
637 TGCGCATCCCGTCTCTCTGGCCAGCGTAGT---CG-C--C-CG--C-C-C--GCC--C----CG-
* ** *
34468 CCGCACGCTCGTTTCATGGGTTGACTTAG
682 -CTCA-TTTCG--TCA---GTTGGCTTAG
* *
34497 GCACACGGAGTTCATTCCCAGTGTAAGCATACGAAGTTCATTCCCAATCTAAGATCAAACTAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-CG--G---A----C---C---G---------GAC
* * * *
34562 CAAGGGTTACGGTAGCACATGCTGGGCTGGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGG
40 CGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCATCGGGG
* * *
34627 CACCAT--------CA-C--CGGAGAACTTGACCGACGACATTGGGGTTCCGGCAATC-GGGGGG
105 CACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCTGGGGGG
34680 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
170 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
*
34745 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
235 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCC
** * * * *
34810 ACAAAAGTGTTTGAAATGGGGACACTTTTTTCAAATAGTAACAAAATCTTGTACACTTCGAGTTT
300 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTT
* * *
34875 TTAGCTGAA-TTTTTTGTGCATACCAAAAAAAATACAGGGATCACGTCTACCAAGTTTGGGGCCA
365 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CA
* * * * ** *
34939 AAAGTCCTTCCGAAAAAATTTGAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAAT
429 AAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAAT
* * *
35004 AGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTCAGGGACCATTGTATGAATTTAC
494 AGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
*
35069 AAGCCATAAAAATGGCATTGGCAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
559 AAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * *
35134 TCGATCCACGGCTTGCGCATCCCGTCACTCTGGCCGGTGTAGTGCCCGCCCGCCCGCCCGCCCGC
624 TCGATCCAAGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGT---CGCCCGCCCG--C-CCCGC
* *
35199 TCGTTTCGTCGGTTGGCTTAG
683 TCATTTCGTCAGTTGGCTTAG
* * *
35220 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGTAGCACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGTAGCACA
35278 CAAAGGGGGA
Statistics
Matches: 1908, Mismatches: 192, Indels: 223
0.82 0.08 0.10
Matches are distributed among these distances:
681 144 0.08
682 3 0.00
684 1 0.00
685 10 0.01
686 1 0.00
689 111 0.06
690 136 0.07
691 205 0.11
694 1 0.00
695 3 0.00
696 2 0.00
697 20 0.01
702 2 0.00
703 1 0.00
705 2 0.00
706 1 0.00
708 75 0.04
709 259 0.14
710 118 0.06
711 1 0.00
713 1 0.00
714 2 0.00
715 2 0.00
716 1 0.00
717 2 0.00
718 121 0.06
719 1 0.00
720 1 0.00
721 3 0.00
722 3 0.00
723 33 0.02
724 1 0.00
725 1 0.00
726 2 0.00
727 1 0.00
728 3 0.00
729 2 0.00
731 4 0.00
733 3 0.00
734 4 0.00
735 1 0.00
736 5 0.00
737 2 0.00
738 1 0.00
739 34 0.02
740 4 0.00
741 3 0.00
743 6 0.00
744 403 0.21
745 55 0.03
746 2 0.00
750 1 0.00
753 2 0.00
754 29 0.02
756 2 0.00
757 2 0.00
765 69 0.04
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (703 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGTAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCATATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGTCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGGCGATCTGGGGGGTGTGCGCACATGATGTGCGATGGGTG
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAATCCTTCCAAAAAAATTTTAAAAA
ATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAAC
TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCGCATCCCGTCT
CTCTGGCCAGCGTAGTCGCCCGCCCGCCCCGCTCATTTCGTCAGTTGGCTTAG
Found at i:35397 original size:26 final size:26
Alignment explanation
Indices: 35367--35419 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
35357 GTTGACTTAG
*
35367 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
35393 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
35419 G
1 G
35420 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:36296 original size:26 final size:26
Alignment explanation
Indices: 36266--36318 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
36256 GTTGACTTAG
* *
36266 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTCCATTCCCAGACTAA
36292 GCATACGGAGTCCATTCCCAGACTAA
1 GCATACGGAGTCCATTCCCAGACTAA
36318 G
1 G
36319 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTCCATTCCCAGACTAA
Found at i:37188 original size:26 final size:26
Alignment explanation
Indices: 37152--37204 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
37142 GTTGACTTAG
*
37152 GCATACGGAGTTCATTCCCAATCTAA
1 GCATAAGGAGTTCATTCCCAATCTAA
*
37178 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAATCTAA
37204 G
1 G
37205 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAATCTAA
Found at i:37589 original size:888 final size:886
Alignment explanation
Indices: 34450--45307 Score: 8894
Period size: 889 Copynumber: 12.1 Consensus size: 886
34440 TGCTCGTCCG
* * *
34450 CTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCACACGGAGTTCATTCC
1 CTCTGGCCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * * ** * * *
34515 CAGTGTAAGCATACGAAGTTCATTCCCAATCTAAGATCAAACTAGACCAAGGGTTACGGTAGCAC
66 CAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCAC
* * *
34580 ATGCTGGGCTGGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCAT---C--A-C--C
131 ATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATC
* * * *
34637 G---GAGAACTTGACCGACGACATTGGGGTTCCGGCAAT--------CGGGGGGTGTGCGCACAT
196 GCCAGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACAT
34691 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
261 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
** *
34756 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACAAAAGTGTT
326 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* *
34821 TGAAATGGGGACACTTTTTTCAAATAGTAACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-T
391 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * *
34885 TTTTTGTGCATACCAAAAAAAATACAGGGATCACGTCTACCAAGTTTGGGGCCAAAAGTCCTTCC
456 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* ** * * *
34950 GAAAAAATTTGAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGT
521 GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGT
*
35015 CGTCTTGCCATGAAACTTCACGTGAAGGCTTCAGGGACCATTGTATGAATTTACAAGCCATAAAA
586 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
*
35080 ATGGCATTGGCAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
651 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * *
35145 CTTGCGCATCCCGTCACTCTGGCCGGTGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCG
716 CTTGCGCATCCCGTCTCTCTGGCCGGCGTA--G--AGCCTGCCCG-CCGCCCGCTCGTTTCGTCG
* * * *
35210 GTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGC-GG-TA
776 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CGAGGGTTACAGGATA
* * * *
35273 GCACACAAAGGGGGACCCAGTCGATCCCCTGCTTGCGCATCCTGCCC
840 GCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCC
* * * *
35320 TTCTGGCCGGCTAAGTGCCCGCATGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
1 CTCTGGCCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * * * * *
35385 CAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGATCGGATCGAGGGTTGCGGTAGCAC
66 CAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCAC
* * * *
35450 ATGCTGGTCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAACATC
131 ATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATC
* * * * *
35515 GCCAGAGAACCTGACCGACGGCATTGAGGTTCCAGCGATCGGAGGGCCGGGGGGTATGCGCACAT
196 GCCAGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACAT
* * *
35580 GATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCACCTATCCCTCATCAAACCTTGAGA
261 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* *
35645 ACTCATACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAATGTGTC
326 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* *
35710 TGGAATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
391 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * *
35775 TTTTTGTGGATGCCAACAAAAATACAGGGACCACGTCTACCAATTTTGGGGCCAAAACTCCTT-C
456 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * *
35839 GAAAAAAATTCTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAG
521 G-AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAG
* * *
35904 TCGTCTTGCCATAAAACTTCACGTGAA-GCTTAAGGGACAATTGTATGAATTTACAAGCCCTAAA
585 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* *
35968 AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATG
650 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * *
36033 GGTTGCGCATCCCATCTCTCTAGCCGACGTAGTAGCC-G-CCGCCGCCCGCCCATTCGTTTCGTC
715 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG-AGCCTGCCCGCCGCCCG--C--TCGTTTCGTC
* *
36096 GATTCGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-CTAGACCGGACTGAGGGTTGCGACA
775 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-AGACCGGAC-GAGGGTT---AC-
* * * *
36160 GTAGGATCG-ACAGCATGTAGAGAGGGACCCGGCCGATCCCTGGCTTGCGCATCCCACCC
834 --AGGATAGCACA-CA-G-AG-G-GGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCC
*
36219 CTCTGGCCGACTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
1 CTCTGGCCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * * * * *
36284 CAGTCTAAGCATACGGAGTCCATTCCCAGACTAAGATTGGACCGGACCGAGGGTTACGGCAGCAC
66 CAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCAC
** * * * *
36349 ATGCTAAGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCAGGGCACCATCGCCGGAGCATT
131 ATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATC
* * * * * *
36414 GCCAGAGAACCTAACCAGCGGCATTGGGGTTCCAGCGATTGGGGGGTC-GGGGGTGTTCGCACAT
196 GCCAGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACAT
* *
36478 GATGTGCGATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGA
261 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* *
36543 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTAGAGGTTTGCTGCTAGTAGCCATTAAAGTGTC
326 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * *
36608 TGAAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGCATT
391 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* **
36673 TTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCATTTTTGGGGCCAAAACTCCTTCC
456 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * * *
36738 AAAAAAATTTTAAAAAAATACCGAACCGTAAAAAGTTTTAAAAATCACGAAAAATTGAAAACGAG
521 GAAAAAATTTT-AAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAG
* * *
36803 TCGTCTTGCCATGAAACTTCACGAGAAGGCTTAAGGGATCGTTGTATGAATTTACAAGCCATAAA
585 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
36868 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
650 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* ** * * * * *
36933 ACTTGCTTATCACGTCTCTCTGGCCGGTGTAGAGCCTACCCGTCCGCCTGCTCATTTCGTCGGTT
715 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGAGCCTGCCCG-CCGCCCGCTCGTTTCGTCGGTT
* * * **
36998 GGCTTAGGCATATGTAGTTCATTCCCAGTCTAAGATCAGATCAAATCGAGGGTTAC-GG-TAGCA
779 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CGAGGGTTACAGGATAGCA
* * ** *
37061 CACAGAGGGGGACCTGGCCGATCTTCGGCTTGCGCATCCCACCC
843 CACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCC
* * * *
37105 CTATGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
1 CTCTGGCCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * * *
37170 CAATCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCAGATCAGATCAAGGGTTGCGGTAGCAC
66 CAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCAC
* * ** * * *
37235 ATGCTGGGCTCAGGCATGTGGTGGTGCTACATTTTTCTTCGCTGGGGCACCATCACCGGAGCATT
131 ATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATC
* * * * * *
37300 GTCAGAGAACCTGGCCGGTGACATTGAGGTTCCGGTGATCGGGGGGCCGGGGGCGGTGTGCGCAC
196 GCCAGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCC-GGGG-GGTGTGCGCAC
* *
37365 ATGATGTGCGATGGATGCTGGTACTTGGCCCTTATATTTGCCCCCTAT-CCTCATCAAACCTCGA
259 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
37429 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
324 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* *
37494 TCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAA
389 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * *
37559 TTTTTTTGTGCATACCAA-AAAAACTACAAGGATCACGTCTACCAAGTTAGGGGCCAAAACCCCA
454 TTTTTTTGTGCATGCCAACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-
* * * * *
37623 TT-CGAAAAAATTTTCAAAAATCCAGAACCGTAAAAAATTTCAAAAATCGTGAAAAATAGAAAAC
517 TTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAAC
* *
37687 GAGTCGTCCTGCCATGAAACTTCACGTGAAGGCTTAATGGACCATTGTATGAATTTACAAGCCAT
582 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * *
37752 AAAAATGGCATTGGCATGCAAAAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATA
647 AAAAATGGCATTGGCATGC-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * *
37817 CATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTG--C-CCGCTCGCTCGTTTCGTCG
711 CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGAGCCTGCCCGCCGCCCGCTCGTTTCGTCG
* * * * *
37879 GTTGGGTTAGGCATACGGAGTTCATTGCCAGTCTAAGATCGGACCAGACTGAAGGTTGTGACAGT
776 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC-G-AGG--GTTAC---
* * * * *
37944 AGGATCGACAGCACACAGAGAGGGACCCGATCGATCCCCCGACTTGCGTATCCCACCC
834 AGGAT----AGCACACAGAGGGGGACCCGGTCGAT-CCCCGGCTTGCGCATCCCGCCC
* * * *
38002 CTCTGGCCGGTTGAGTGCCCGCACTCTCGTTTCATGGGTTGACTTAGCCATACAGAGTTCATTCC
1 CTCTGGCCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
**
38067 CAG--T---C-T-A--AG---A-T--C-G-----GATCGGACC-G----AGGGTTGCAACAGCAC
66 CAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCAC
* * * ** * * *
38106 ATGCTGGACTCGGGCAAGTGCTGGTGTCGCATTTTTCTTCGTAGGGGCACCAACGTCAGAGCATC
131 ATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATC
* * * * * *
38171 GCCAGAGAACCTGATCGACGGCATTGGGGTTCCGACGATTGGGCGGGTCGGGGGGTGTGCACACA
196 GCCAGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGG-GGGCCGGGGGGTGTGCGCACA
* *
38236 TGATGTACGATGGGTGCT-GTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTTGAG
260 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
38299 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
325 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* *
38364 CTGAAATGGGGACACTTTTTTGAAATGGTCGCAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
390 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * * *
38429 TGTTTTGTGCATACCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTT
455 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * ** *
38494 CGAAAAAAATTTTAAAAAATCTCGTACCACAAAAAGTTTTAAAAATCATGAAAAATAAAAAACGA
520 CG-AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGA
* *
38559 GTGGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAACATTGTATGAATTTACAAGCCATAA
584 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* *
38624 AAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCTATCCAC
649 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* ** * *
38689 GGCTTGTGCATCCCGTCTCTCTGG-C--C--A-A--C-G-TTG-TGCCCGCTCGTTTCGTC-ATG
714 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGAGCCTGCCCGCCGCCCGCTCGTTTCGTCGGT-
* * * **
38742 TAGCTTAGGCATATGGAGTTCATTCCCAGTCCAAGATTGGACCGGACGGAGGGTTGCAGCAGTAG
778 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC-GAGGGTT--A-C---AG
* * ** * *
38807 GATTGGCAGCACATATAGCAGGACCCGGTCGATCCTCGGCTTGAGCATCCCGCCC
836 GA-T---AGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCC
* * * * *
38862 GTTTGGCCGGATGAGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
1 CTCTGGCCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * * * * *
38927 CAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGTGCTGCGGCAGTAG
66 CAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCAC
* * * * ** * **
38992 ATGCTGGGCTTGGGCATGTGTTGGTGCCGTATTTTTTTTCGTTGGGGAACCATCGCCAAAGCATC
131 ATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATC
* * * * ** *
39057 GCCGGAGAACCTGACCGGTGGCATTGGGGTTCTGACGATCGAGGGGG-TTGGGGGTATGCGCACA
196 GCCAGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCG-GGGGGCCGGGGGGTGTGCGCACA
* * * *
39121 TGATGTGTGATGGGTGCTGG-AATTGGCCCTTAAATTGGCCTCCTATCCCTCATCAAACCTCGAG
260 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* *
39185 AACTCACACCCCCTTAAAGAGCAATTGATATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
325 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * *
39250 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGATTTTTTGGCTGAAT
390 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * *
39315 TGTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGATT-GGGCCAAAACTCCTTC
455 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * **
39379 CGAAAAAAGTTTAAAAAATCTCGAACCACAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAG
520 CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAG
*
39444 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAATTACAAGCCATAAA
585 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* *
39509 AATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
650 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * *
39574 GCTTGCGCATCCCGTCTCTCTGGGCGGCGT--AG--TG--C-CCGCCCGCTCATTTCGTCGGTTA
715 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGAGCCTGCCCGCCGCCCGCTCGTTTCGTCGGTTG
*
39632 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-AGGACCGGACCAAGGGTTGTGGTAGCAAG
780 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-GACCGGA-CGA-GG--GT--TA-C-AG
* * * * * **
39696 ATCGACAGCACATAGAGGGGGACGCGGTTGATCCCCGACTTGCGCATCTTGCCC
836 ---GATAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCC
** * ** * *
39750 CTCTGGCCGG-TCGAGCACCCGTACTATCGTTTCGTGGGGTGACTTAGGCATACGGAGTTCATTC
1 CTCTGGCCGGCT-GAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTC
* * * *
39814 CTAGTCTAAGCATACA-AACTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTACGGCAGC
65 CCAGTCTAAGCATA-AGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGC
* * *
39878 ACATGCTGGGCTCGTGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCGTCGGAGCA
129 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCA
* * * * * * * *
39943 TCGTC-GAAGAACCTGATCGGTGACATTGGGGTTCTGACGAACGGGTGGGCCGGGGGGGGTGTGT
194 TCGCCAG-AGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGG-GGGCC--GGGGGGTGTGC
* * * * *
40007 GCACATGATGTGCGATGGGGGCTGGTACTTGGCCCTCATTTTTGCCCCCTATCGCTCATCAAACC
255 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * *
40072 TCAAGAACTCACACCCCCTTAAAGAGCATTTTAGATTTTACAGGTTTACTGCCAGTAGCCATTAA
320 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* **
40137 AGTGTCTGAAATGGGGACACGTTTTTCAAATGGTCACAAAATCTTACACACTTCGAGTTTTTAGC
385 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
*
40202 TCAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
450 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * *
40267 CTTTTC-AAAAAATTTTAAAAAATCCCGAACCGTAAAAA-TTTTCAAAAAT-AGTGAAAAATACA
515 CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTT-AAAAATCA-TGAAAAATAGA
* *
40329 AAACGAG-CTGTCTTGCCATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTACGAATTTACAA
578 AAACGAGTC-GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* * * * *
40393 GCCATAAAAATGGCATTGGCACGTAGAAATATAAAGATGTACCTAAACCCACCGACCACCCTATC
642 GCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * * * * * * * *
40458 GATCCACGGTTTGCGCATCCCGCCTCTTTGGTCGGCATAGTGCCCGCTCGCCCACCCGCTCCTTT
707 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGAGCCTGCCCG-CCGCCCGCTCGTTT
* * *
40523 CATCGGTTGGCTTAGGCAAACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTG
771 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CGAGGG-T-T-
* * * * * *
40588 GCAGCAGGATCGGCAGCACGCAAAGGGGGACCCGATCGATCCCCGGCTTACGCTTTCCGCCC
832 --A-CAGGAT----AGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCC
* * * * *
40650 CTCTGGCTGGCTGAGTGCCCTCACGTTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
1 CTCTGGCCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * *
40715 CAGTCTAAGCATATGGAGTTCATTCTCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAACAC
66 CAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCAC
* * * * *
40780 ATGCTGGGCTCGGGCATGTGCTGGAGCCACATTTTTCTTCACCGGGGAACCATCGTCGGAGCATC
131 ATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATC
** * *
40845 GCTGGAGAACCTGACCGGCGGCATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGGTGTGCGAAC
196 GCCAGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCC-GGGGGGTGTGCGCAC
* * * *
40910 ATAATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCAA
259 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
*
40975 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTG
324 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* * *
41040 TCTGAAATGGGGACACTTTTTTTGAAATGGTCACAAAATCTTGTATACTTCAAGTTTTTAGCTGA
389 TCTGAAATGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * * *
41105 ATTTTTTTCTGCATTCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCGAAAA-TCC
453 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAACTCC
* * *
41169 TTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATTATGAAAAATAGAAAAC
517 TTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAAC
* *
41234 GAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAGTTTACAAGCCAT
582 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * * *
41299 AAAGATGGTATTGGCATGCAAAAAAATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
647 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * * *
41364 ATGGCTTGCGCATCCCATCTCTCTGGCCCGCGT--AG--TGCCCGCTTGCCCGCTCGTTTCATCG
712 ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGAGCCTGCCCGC-CGCCCGCTCGTTTCGTCG
* ** * * **** *
41425 GTTGGCTTAAGCATATAGAGTTCATTCCCAGTCTAAG--CATA-TGGA-GTTCATTCCCA-G-T-
776 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACGAGGGTT-ACAGGATA
* ** * * *
41483 -C-TA-AGA-TCGGA-CCGGACTGA-----GGGTTGCGGCA----GCAC
840 GCACACAGAGGGGGACCCGGTC-GATCCCCGGCTTGC-GCATCCCGCCC
* *** * * ** * ** ** * **
41518 ATGCT-G--GGCTTGA--GAATG--TGCTGGTGCCAT-GTTTTTCTT--GCCCAGGGCACCATCA
1 CT-CTGGCCGGC-TGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGG-A-GTTCA
** * ** *** ** * * ** * * *
41573 -TCGGAG---AAGCCATAA-AAGGGCCGGCGTAGTGC---CACCCTATC-GATCCACGGCTTGC-
62 TTCCCAGTCTAAG-CATAAGGAGTTCATTCCCAGT-CTAAGATCGGACCAGA-CCAAGGGTTGCG
* * * * * * * **
41628 GCATCCCGTCTCTCTGGC-CGGCGTAGTGCTCGTCCGCCCGCCTGCCCGCCCACCCTCTCGCTCG
124 GCAGCACAT-GCT-GGGCTCGG-GCA-TG-T-G-CTG---G--TG-CCG--CA---T-T-TTTC-
* * * ** * * * * *
41692 TTTGGTCGGTTGGCTTAGGCAT--ATGGAGTTCATTCCGAGTCTAAGATTGGATCAGACCGAGGG
168 -TTCGCCGG--GGC--A-CCATCGCCGGAG--CA-T-C--G-C-CAGA--GAACCTGACCG-GCG
* * * * *** * * * ***
41755 TTGCAGTAGCAGGAT-CGAAAGC-ATGTAGAGGGGGACTCGATCGATCCTCAACTTGCACATCCG
216 --GCA-TTG-GGGTTCCG---GCGA--TCG-GGGGG-C-CGGGGGGT-GT--GC--GCACATGAT
* ** * ** * ***
41818 GTCCTTCTGGCCG-GCTGAGCACCCGCACGCTCGTTTCTTGGGTTGACTTAGGCATACGGAGTTC
264 GTGC-GATGG--GTGCTG-GTACTTG---GC-C----CTT---AT-A-TT-GGC---C--CCCT-
* * * ** ** ** * **** ** *
41882 ATTCCT-AGTCTAAACATATG-GAGTTCATTCCCAGTCT-AAGATCAGACCAGA-TCGA-GGGTT
305 ATCCCTCA-TC-AAACCT-CGAGAACTCACACCCCCT-TAAAGAGCATTTGAGATTTTACAGGTT
* * * * * ** * ** * **** *
41942 ACGACAGCATAAGCTGGGC-TT-GGGCATGTGCTG--GTGCCGA-ATTTTTCTTCGTCGGGGCAC
366 -TG-CTGC--CAG-TAGCCATTAAAG--TGT-CTGAAATGGGGACACTTTT-TTCAAATGGTCAC
** * * * *** * * * * * *
42002 --CGTCGTCGGAGCATTGTCGGAGAACCTGACCGGCAGCATTGGGGTTCCGATGATTGGGGAGGC
422 AAAATC-TTGTA-CACT-TC-GAG-TTTTTA---GCTGAATT----TT----T--TTGTGCATGC
** ***** ** *** * **
42065 CGGGGGCGGTTGTCCGCACATGATGTGAGAT-GGGTGCT-GGTAG-TT-GGCCCTTATATTGGCC
469 C---AACAAAAAT----ACA--A---G-GATCACGT-CTACCAAGTTTGGGGCC--A-A---AAC
* * ** ** ** * * ** * * * ***
42126 CCCTATCCCTCATCAAACCTCGAGAACTCACAC-CCCCTTAAAGAGCATTTGAGATTTTACAGGT
514 TCCT-T-CC-GAAAAAATTTTAAAAAATC-C-CGAACCGTAAAAAG--TTTTA-AAAAT-CA---
*** * * ** * * * ***
42190 TTGCTGGCAGTAGCCATTAA--AGT-GTC-TGAAATGGGGACACTTTTTTCAAAAGGTCACAAAA
567 -TG--AAAAATAG--A-AAACGAGTCGTCTTGCCAT---GAAAC----TTC---ACGTGA-AGGC
** ** * * * * * ** *
42251 TTTTGTTCACCTCGATTTTTTAGCTGAATTTTTTTGTGCATGCAAAAAAAATATACA-AGG-AT-
615 TTAAG-GGA-C-C-A--TTGTA--TGAA-----TT-TACAAGCCATAAAAAT-GGCATTGGCATG
** ** * * * * * * * **** ** ** *** * *
42313 CACG-TCTACCAAGTTTGGGGCCAAAACTC-CTTTCGAAAAAAT-TTTAAAAAATCTCGAACCGT
665 CA-GAAATATGAAG-AT-GTGCCTAAACCCACCTACCACCCTATCGAT-CCACGGCTTG---CGC
**** * ****** ** *** * * ** *** * *
42375 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAATG--AGTCGTCTTGC-CATGAAACTTCAAG-T-
723 ATCCCGTCTCTCTGGCCG-G---CGTAGAGCCTGCCCGCCG-CCCGCTC--GTTTCGTC-GGTTG
* * * ** ** ** ** ** * * *
42435 G--AAGGCTTAAGG-GACCATT-GTA-TC-AATTTACA-AGCCATAAAAATGGCATTGGCATG-T
780 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-CAGA-CC-GGACGA-GG-GTT-ACAGGAT
* * * ** ** * * * ** *
42492 AG-AGATATGAAGATGTGCC--T-AAACCCAC--C-TAC-CA-CCCTATCG
839 AGCACACA-GAGGGGGACCCGGTCGATCCC-CGGCTTGCGCATCCC-GCCC
* * ** ** * ** * ** * * * ** *
42534 ATC---CACGGCTTGCGTATCCGGTCTCTC-TGGC-CGGCGTAGTG-C-CCGCCCGTCCGCCCGC
1 CTCTGGC-CGGC-TGAGTGCCCGCACGCTCGTTTCATGG-GT--TGACTTAG-GCATACG-GAGT
* * * * * * ** * * *
42592 TCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCATACCGGACCGATG
59 TC-ATTC-CCAG-T--C-TAAGCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGG
* * * * *
42657 GTTGCAGCGGCACATGCTGGGCTCGGGCATGTGCTAGTGCCGTATTTTTCTTCACCGGGGCACCA
118 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCA
* * * * * * * * * **
42722 CCACCGGAGCATCGTCGGAGAACCTGATCGACAGCATTGGGATTTCGATGATCGGGGGGCCGGGG
183 TCGCCGGAGCATCGCCAGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGG
* *
42787 GGTGTGCGCACATAATGTGCGATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCA
248 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
*
42852 TTAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
313 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* *
42917 CCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCGAGT
378 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* *
42982 TTTTGGCTGAATTTTTTTGTGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGC
443 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * * * *
43047 CAAAACCCCTTCTGCAAATATTTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAA
508 CAAAACTCCTTCCG-AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAA
* *
43112 AATAAAAAACGAGTCGTCTTACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTAGTATGAAT
572 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT-GTATGAAT
* *
43177 TTACAAGCCATAAGAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
636 TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * * ** ** * *
43242 CCTATCAATCAACGGCTTGCGCATCCCGTTTCTTTGGTTGGTATAGTGCCCGCCCGCCCGTCGCC
701 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGAGCCTGCCCG--C--CGCC
* * * * * ** *
43307 CGTTCATTTCATCGGTTGGCTTAGGCATGCGGAGTTCATTCCCAGTCTAAGATCAAACCAAAATG
762 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GGACG
* * * * * *
43372 AGGGTTGTGGTAGCAGGATCAACAGCACGCATAGGGGGACCCGGCCAATCCTCGGCTTGTGCATC
826 A-GG--GT--TA-CAGGAT----AGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATC
43437 CCGCCC
881 CCGCCC
* *
43443 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCC
1 CTCTGGCCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * *
43508 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGTAGCAC
66 CAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCAC
* * * * *
43573 ATGCTGGGGTTGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGTGCATC
131 ATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATC
* *
43638 GCCAGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCAGGGGGGCCAGGGGGTGTGCGCACA
196 GCCAGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGTGTGCGCACA
43703 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
260 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
43768 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
325 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * * * *
43833 CTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTATACACTTTGACTTTTTTGCTGAAT
390 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
** *
43898 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAGAAAGTTTGGGGCCAAAACTCCTTT
455 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * ** * *
43963 CGAAAAAATTTTAAAAAATCCCGAACAGCAAAAAGTTTGGAAAATCGTGAAAAATAGAAAATGAG
520 CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAG
* *
44028 TCGTGTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCCTTGTATGAATTTACAAGCCATAAA
585 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * * *
44093 AATGGCATTGGCACGCAGAAATATGAAGATGTGCCCAAATCCACCTACCACTCTATCGATCCACG
650 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
*
44158 GCTTGC-CATCCCGTCTCTCTGGCCGGCGT--AG--TG--C-CCGCCCGCTCGTTTCGTCGATTG
715 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGAGCCTGCCCGCCGCCCGCTCGTTTCGTCGGTTG
* * *
44215 GCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGACTGCGGGTTGTGGCAGCAGGA
780 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC-GAGGG-T-T---A-CAGGA
* * ** * * * *
44280 TTGGCAGCACGTAGAGGGGGACCTGACCGATCCTCGACTTGCGAATCCCGCAC
838 -TAGCA-CAC--AGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCC
* * ** * * * * *
44333 CTTTAGCTTGTTGAGTGCCTGCACACTCGTTTCGTGGGTTGACTAAGGCATACGGAGTTCATTCC
1 CTCTGGCCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
** * * * *
44398 CAGTCTAAGCATACCGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGACAGCAC
66 CAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCAC
* * ** * * *
44463 ATGCTAGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCAGGGCACCATCGTCAGAGCATC
131 ATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATC
** * * * * *
44528 GCTGGAGAACCTGACCGGCGGCATTAGGGTTCCGACGATCGGGGGGCCAGGGGGAGTTCGCACAT
196 GCCAGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACAT
* *
44593 GATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAATCTCGAGA
261 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* *
44658 ACTCACACCCCCTTAAAGACCGTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
326 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * * * * *
44723 TGAAATGGGGACATTTTTTTCAAATGGTGACAAAATCTTATACACTTCAACTTTTTTGCTGAATT
391 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
*
44788 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC
456 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * * *
44853 GAAAAAATTTTAAAAAATCCCGAACAGCAAAAAG-TTTAGAAAATCGTGAAAAATAAAAAACGAG
521 GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTA-AAAATCATGAAAAATAGAAAACGAG
* *
44917 T-GTCTAGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAA
585 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * *
44981 AATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTACG
650 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * * *
45046 GCTTGCGCATCCCGTCTCTTTGGTCAGCGTAGTTCCCGCCCGCCCGCCCGCCCGCTCATTTCGTC
715 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG----AGCCTGCCCG-CCGCCCGCTCGTTTCGTC
* ** ** *
45111 GGTTGGCTTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTAGACCAAGGGTTGTGGTAG
775 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CGA-GG--GT--TA-
* *
45176 CAGGATCTGCAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCACCC
833 CAGGAT-AGCA-CAC--AGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCC
* * * *
45234 CTCTGGCCGGTTGAGTGCCCGCATGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
1 CTCTGGCCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
45299 CAGTCTAAG
66 CAGTCTAAG
45308 ATCGGAATGG
Statistics
Matches: 7996, Mismatches: 1457, Indels: 1039
0.76 0.14 0.10
Matches are distributed among these distances:
855 8 0.00
856 18 0.00
857 5 0.00
858 14 0.00
859 6 0.00
860 89 0.01
861 95 0.01
862 11 0.00
863 7 0.00
864 2 0.00
865 2 0.00
866 6 0.00
867 5 0.00
868 15 0.00
869 287 0.04
870 322 0.04
871 106 0.01
872 8 0.00
873 3 0.00
874 2 0.00
875 7 0.00
876 19 0.00
877 2 0.00
878 4 0.00
879 5 0.00
880 1 0.00
881 44 0.01
882 3 0.00
883 9 0.00
884 269 0.03
885 76 0.01
886 538 0.07
887 209 0.03
888 712 0.09
889 764 0.10
890 455 0.06
891 77 0.01
892 432 0.05
893 32 0.00
894 13 0.00
895 25 0.00
896 33 0.00
897 146 0.02
898 331 0.04
899 484 0.06
900 525 0.07
901 397 0.05
902 101 0.01
903 247 0.03
904 282 0.04
905 9 0.00
906 10 0.00
907 3 0.00
908 7 0.00
909 12 0.00
910 18 0.00
911 11 0.00
912 8 0.00
913 3 0.00
914 9 0.00
915 3 0.00
916 2 0.00
917 1 0.00
918 1 0.00
919 2 0.00
920 5 0.00
921 2 0.00
922 4 0.00
923 1 0.00
924 9 0.00
925 16 0.00
926 13 0.00
927 38 0.00
928 12 0.00
929 10 0.00
930 14 0.00
931 11 0.00
932 2 0.00
933 4 0.00
934 7 0.00
936 2 0.00
938 2 0.00
940 2 0.00
942 1 0.00
943 8 0.00
944 6 0.00
945 1 0.00
947 1 0.00
949 2 0.00
951 3 0.00
953 7 0.00
954 4 0.00
955 3 0.00
956 7 0.00
957 10 0.00
958 8 0.00
959 19 0.00
960 13 0.00
961 29 0.00
962 10 0.00
963 16 0.00
964 9 0.00
965 2 0.00
966 3 0.00
967 2 0.00
968 4 0.00
969 2 0.00
970 1 0.00
971 1 0.00
972 2 0.00
973 4 0.00
974 9 0.00
975 3 0.00
976 5 0.00
977 2 0.00
978 1 0.00
979 2 0.00
980 3 0.00
982 4 0.00
983 8 0.00
984 7 0.00
985 10 0.00
986 1 0.00
987 2 0.00
988 1 0.00
989 1 0.00
990 8 0.00
991 1 0.00
992 8 0.00
993 2 0.00
995 1 0.00
996 9 0.00
997 19 0.00
998 25 0.00
999 1 0.00
1000 9 0.00
1001 10 0.00
1002 2 0.00
1003 9 0.00
1004 7 0.00
1005 4 0.00
1006 6 0.00
1007 6 0.00
1008 9 0.00
1009 6 0.00
1010 1 0.00
1011 6 0.00
1012 6 0.00
1013 2 0.00
1014 8 0.00
1015 3 0.00
1016 10 0.00
1017 1 0.00
1018 2 0.00
1019 4 0.00
1020 3 0.00
1021 2 0.00
1022 3 0.00
1023 5 0.00
1024 4 0.00
1025 1 0.00
1026 1 0.00
1029 1 0.00
1030 1 0.00
1031 6 0.00
1032 12 0.00
1033 5 0.00
1034 17 0.00
1035 7 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (886 bp):
CTCTGGCCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
CAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCAC
ATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATC
GCCAGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACAT
GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGT
CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGAGCCTGCCCGCCGCCCGCTCGTTTCGTCGGTTGG
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACGAGGGTTACAGGATAGCACAC
AGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCC
Found at i:38945 original size:26 final size:26
Alignment explanation
Indices: 38909--38961 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
38899 GTTGACTTAG
38909 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
38935 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
38961 G
1 G
38962 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:40726 original size:26 final size:26
Alignment explanation
Indices: 40697--40749 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
40687 GTTGACTTAG
40697 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
40723 GCATATGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
40749 G
1 G
40750 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:41070 original size:900 final size:900
Alignment explanation
Indices: 38050--45307 Score: 5017
Period size: 888 Copynumber: 8.0 Consensus size: 900
38040 TTGACTTAGC
* * * * ** *
38050 CATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCAACAGCACATGCTGGAC
1 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCACATGCTGGGC
* * ** * * *
38115 TCGGGCAAGTGCTGGTGTCGCATTTTTCTTCGTAGGGGCACCAACGTCAGAGCATCGCCAGAGAA
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCAGAGAA
* * * * * * * *
38180 CCTGATCGACGGCATTGGGGTTCCGACGATTGGGCGGGTCGGGGGGTGTGCACACATGATGTACG
131 CCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
*
38245 ATGGGTGCT-GTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTTGAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
38308 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
38373 GGACACTTTTTTGAAATGGTCGCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* *
38438 CATACCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAA
391 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG-AAAAAA
* * ** * *
38503 TTTTAAAAAATCTCGTACCACAAAAAGTTTT-AAAAATCATGAAAAATAAAAAACGAGTGGTCTT
455 TTTTAAAAAATCCCGAACCGTAAAAAGTTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
38567 GCCATGAAACTTCACGTGAAGGCTTAAGGGAACATTGTATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
38632 TTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCTATCCACGGCTTGTG
585 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
** * *
38697 CATCCCGTCTCTCTGGCCAACGT--T----G-T-----GCCCGCTCGTTTCGTC-ATGTAGCTTA
650 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCTCGCCCGCCCGCTCGTTTCGTCGGT-TGGCTTA
* * ** * ** * * *
38749 GGCATATGGAGTTCATTCCCAGTCCAAGATTGGACCGGACGGAGGGTTGCAGCAGTAGGATTGGC
714 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGAC
* * ** * * * * *
38814 AGCACATATAGCAGGACCCGGTCGATCCTCGGCTTGAGCATCCCGCCCGTTTGGCCGGATGAGTG
779 AGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGTG
* *
38879 CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
844 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * * *
38936 CATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGTGCTGCGGCAGTAGATGCTGGGC
1 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCACATGCTGGGC
* * * * ** * ** *
39001 TTGGGCATGTGTTGGTGCCGTATTTTTTTTCGTTGGGGAACCATCGCCAAAGCATCGCCGGAGAA
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCAGAGAA
* * * * ** * *
39066 CCTGACCGGTGGCATTGGGGTTCTGACGATCGAGGGGG-TTGGGGGTATGCGCACATGATGTGTG
131 CCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* * *
39130 ATGGGTGCTGG-AATTGGCCCTTAAATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
39194 CCCCTTAAAGAGCAATTGATATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * * *
39259 GGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGATTTTTTGGCTGAATTGTTTTGTG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * *
39324 CATGCCAACAAAAATACAAGGATCATGTCTACCAAGATT-GGGCCAAAACTCCTTCCGAAAAAAG
391 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAT
* **
39388 TTTAAAAAATCTCGAACCACAAAAAGTTTT-AAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
456 TTTAAAAAATCCCGAACCGTAAAAAGTTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
39452 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAATTACAAGCCATAAAAATGGCAT
521 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
39517 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
586 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * *
39582 ATCCCGTCTCTCTGGGCGGCGTA------G-T-GCCCGCCCGCTCATTTCGTCGGTTAGCTTAGG
651 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * *
39639 CATACGGAGTTCATTCCCAGTCTAAGAT-AGGACCGGACCAAGGGTTGTGGTAGCAAGATCGACA
716 CATACGGAGTTCATTCCCAGTCTAAGATCA-GACCGGACCGAGGGTTGTGGCAGCAGGATCGACA
* * * * ** **
39703 GCACATAGAGGGGGACGCGGTTGATCCCCGACTTGCGCATCTTGCCCCTCTGGCCGG-TCGAGCA
780 GCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT-GAGTG
* ** * * *
39767 CCCGTACTATCGTTTCGTGGGGTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAG
844 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
** * *
39824 CATACAAACTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTACGGCAGCACATGCTGGGC
1 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCACATGCTGGGC
* * * *
39889 TCGTGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCGTCGGAGCATCGTC-GAAGA
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCAG-AGA
* * * * * * * *
39953 ACCTGATCGGTGACATTGGGGTTCTGACGAACGGGTGGGCCGGGGGGGGTGTGTGCACATGATGT
130 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCC--GGGGGGTGTGCGCACATGATGT
* * * * * *
40018 GCGATGGGGGCTGGTACTTGGCCCTCATTTTTGCCCCCTATCGCTCATCAAACCTCAAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
40083 CACCCCCTTAAAGAGCATTTTAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* ** *
40148 TGGGGACACGTTTTTCAAATGGTCACAAAATCTTACACACTTCGAGTTTTTAGCTCAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
*
40213 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTTC-AAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
*
40277 AATTTTAAAAAATCCCGAACCGTAAAAA-TTTTCAAAAAT-AGTGAAAAATACAAAACGAG-CTG
453 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTTCAAAAATCA-TGAAAAATAGAAAACGAGTC-G
* *
40339 TCTTGCCATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAAT
516 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * * * *
40404 GGCATTGGCACGTAGAAATATAAAGATGTACCTAAACCCACCGACCACCCTATCGATCCACGGTT
581 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * * *
40469 TGCGCATCCCGCCTCTTTGGTCGGCATAGTGCCCGCTCGCCCACCCGCTCCTTTCATCGGTTGGC
646 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCTCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* *
40534 TTAGGCAAACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTGGCAGCAGGATC
711 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATC
* * * * * * * *
40599 GGCAGCACGCAAAGGGGGACCCGATCGATCCCCGGCTTACGCTTTCCGCCCCTCTGGCTGGCTGA
776 GACAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * *
40664 GTGCCCTCACGTTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
841 GTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * *
40724 CATATGGAGTTCATTCTCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAACACATGCTGGGC
1 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCACATGCTGGGC
* * * * * **
40789 TCGGGCATGTGCTGGAGCCACATTTTTCTTCACCGGGGAACCATCGTCGGAGCATCGCTGGAGAA
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCAGAGAA
* * *
40854 CCTGACCGGCGGCATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGGTGTGCGAACATAATGTGC
131 CCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGC
* * *
40919 AATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
40984 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * *
41049 GGGACACTTTTTTTGAAATGGTCACAAAATCTTGTATACTTCAAGTTTTTAGCTGAATTTTTTTC
325 GGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
41114 TGCATTCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCGAAAA-TCC-TTCTGAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAACTCCTTTC-GAAA
* * *
41177 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTT-GAAAATTATGAAAAATAGAAAACGAGTCAT
452 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
41241 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAGTTTACAAGCCATAAAGATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
41306 GTATTGGCATGCAAAAAAATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTT
582 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * * *
41371 GCGCATCCCATCTCTCTGGCCCGCGTAGTGCCCGCTTGCCCGCTCGTTTCATCGGTTGGCTTAAG
647 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCTCGCCCGCCCG---C-TC-GTT-TCGT-CG
* * * *
41436 CATATAGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACT
705 -GT-T-G-G--C-TT---AG-----GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACC
* * * * * * * ** ***
41501 GAGGGTTGCGGCAGCA-CATGCTGGGCTTG-AGA-ATGTGCTGGTG-CCATGTTTTTCTTGCCCA
755 GAGGGTTGTGGCAGCAGGAT-C--GAC-AGCACACA-GAG--GGGGACCCGGTCGATC---CCC-
** * ** * * ** ** * * *
41562 GGGC-ACCATCATCGGAGAAGCCATAAAAGGGCCGGC-GTAGTGCCAC-C-CTATCGATCCACGG
809 -GGCTTGC-GCATC-CCG--CCCCT---CTGGCCGGCTG-AGTGCC-CGCACGCTCGTTTCATGG
* ** * * * **
41623 CTTG-C----GCAT-C-CCG-TC--TCTCTGGC-CGG
864 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * * * * * * * **** * *** ** * *
41649 CGTA--GTGCTCGTCCGCCCGCCT--G-CCCGCCCA-CCCTCTCGCT-CGTTTGGTC--GGTTGG
1 CATACGGAGTTCATTC-CCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCACATGCTGGG
** * * ** * *** *** * *
41705 CTTAGGCATATGGAGTTCATTCCG-AGTCTAAGATTGGATCAGACCGAGGGTTGCAGTAGCAGGA
65 CTCGGGC--AT-GTGCTGGTGCCGCA-T-T----TTTCTTC-G-CCG-GGGCACCA-TCGCCGGA
* ** * * ** **** ** *
41769 TCGAAAG-CATGTAGAGGGGGA-CTCGATCGATCCTCAACTTGCACATCCGGTCCTTC----TGG
117 GC-ATCGCCA-G-AGA-----ACCT-GACCG-GCGGC-A-TTGGGGTTCCGG-CGATCGGGGGGG
* * **** * * * * ****
41828 CCGGCTGAGCACCCGCAC--GCTCGTTTC-TTGGGT--T-G-ACTTAGG--C--ATA-CGGAGTT
169 CCGG-GGGGTGTGCGCACATGAT-G-TGCGATGGGTGCTGGTACTT-GGCCCTTATATTGGCCCC
* ** * * ** ** * * * * * * *
41881 C-ATTCCTAGTCTAAACATATG-GAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTAC
230 CTATCCCTCATC-AAACCT-CGAGAACTCACACCC--CCTTA-A--AGAGCA-TTTGA-GATT-T
* * ** * * * * *** * * * ** **
41944 GACAGCATAAGCTGGGC-TTGGGCATGTGCTG-GTGCCGAATTTTTCTTCGTCGGGGCACCGTCG
285 TACAG-GTTTGCT-GCCAGTAGCCAT-TAAAGTGT-CTGAA------AT-G--GGGACACTTTTT
* * ** * * * * ** *******
42007 TCGGAGCATTGTCGGAGAA-CCTG-ACCGGCAGCATTGGGGTTCCGATGATT-GGGGAGGCCGGG
337 TC--A-AATGGTCACAAAATCTTGTA----CA-C-TTCGAGTT----T--TTAGCTGAATTTTTT
* * ** * * ** * * * ** * * * * ***
42069 GGCGGTTGTCCGCACATGATGTGAGATGGGTGCTGGTAGTTGGCCCTTA-TATT-GGCCCCCTA-
387 TGTGCATG-CC-AACA-AAAAT-ACAAGGAT-CACGT--CT--ACC-AAGT-TTGGGGCCAAAAC
* ** ** ** * * ** * * * * ***
42131 TCC-CTC-ATCAAACCTCGAGAACTCACAC-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
441 TCCTTTCGAAAAAATTTTAAAAAATC-C-CGAACCGTAAAAAG-TTTTCA-AAAAT-CA----TG
*** * * ** * * * *** *
42193 CTGGCAGTAGCCATTAA--AGT-GTC-TGAAATGGGGACACTTTTTTCAAAAGGTCACAAAATTT
497 --AAAAATAG--A-AAACGAGTCGTCTTGCCAT---GAAAC----TTC---ACGTGA-AGGCTTA
* ** * * * * * ** *
42254 TGTTCACCTCGATTTTTTAGCTGAATTTTTTTGTGCATGCAAAAAAAATATACA-AGG-AT-CAC
546 AG-GGA-C-C-A--TTGTA--TGAA-----TT-TACAAGCCATAAAAAT-GGCATTGGCATGCA-
** ** * * * * * * * **** ** ** *** * * **
42316 G-TCTACCAAGTTTGGGGCCAAAACTC-CTTTCGAAAAAAT-TTTAAAAAATCTCGAACCGTAAA
595 GAAATATGAAG-AT-GTGCCTAAACCCACCTACCACCCTATCGAT-CCACGGCTTG---CGCATC
** * ****** ** ***** * ** * ** **
42378 AAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAAC--TTCAAGT--GAAG
654 CCGTCTCTCTGGCCG-G---CGTAGTGCCCG-CTCG-CCCGCC-CG-CTCGTTTC--GTCGGTTG
* * *** * * * * * ** * * * *
42439 GCTTAAGGGA-CCATTGTATCAATTTACAAGCCATAAAAAT-GGCATTGG-CATGTAGAGATAT-
709 GCTT-AGGCATACGGAGT-TC-A-TTCCCAGTC-T-AAGATCAG-ACCGGAC-CG-AGGGTTGTG
* * * * * ** ** ** * * * * *
42500 GAAG-ATG-T-GCCTAAACCCACCTA---CCACCCTATCGATCCACGGCTTGCGTATCCGGTCTC
765 GCAGCAGGATCGAC--AGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCC
* ** * * * *
42559 TCTGGCCGGC-GTAGTGCCCGCCCG-TCCG---C-CCGCTCG--TT--TCAT-C-G-G----TTG
828 TCTGGCCGGCTG-AGTGCCCGCACGCT-CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTC
* *
42607 GC--T-TAGG
891 CCAGTCTAAG
* ** * * * * *
42614 CATACGGAGTTCATTCCTAGTCTAAGATCATACCGGACCGATGGTTGCAGCGGCACATGCTGGGC
1 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCACATGCTGGGC
* * * * * * *
42679 TCGGGCATGTGCTAGTGCCGTATTTTTCTTCACCGGGGCACCACCACCGGAGCATCGTCGGAGAA
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCAGAGAA
* * * * * ** *
42744 CCTGATCGACAGCATTGGGATTTCGATGATC-GGGGGGCCGGGGGGTGTGCGCACATAATGTGCG
131 CCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* *
42808 ATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATTAAACCTCGAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
42873 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
42938 GGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCGAGTTTTTGGCTGAATTTTTTTGTG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * *
43003 CATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-CCCTTCTGCAAATA
391 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-G-AAAAA
* * *
43067 TTTTTAAAAAATCCTGAACCGTAAAAAG-TTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCT
454 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
43131 TACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTAGTATGAATTTACAAGCCATAAGAATGG
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT-GTATGAATTTACAAGCCATAAAAATGG
* * *
43196 CATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCAACGGCTTG
583 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * ** ** * * * *
43261 CGCATCCCGTTTCTTTGGTTGGTATAGTGCCCGCCCGCCCGTCGCCCGTTCATTTCATCGGTTGG
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCTCG-CC--CGCCCGCTCGTTTCGTCGGTTGG
* * ** ** *
43326 CTTAGGCATGCGGAGTTCATTCCCAGTCTAAGATCAAACCAAAATGAGGGTTGTGGTAGCAGGAT
710 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGAT
* * * * * * *
43391 CAACAGCACGCATAGGGGGACCCGGCCAATCCTCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTG
775 CGACAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* *
43456 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG
840 AGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * *
43517 CATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGTAGCACATGCTGGGG
1 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCACATGCTGGGC
* * * *
43582 TTGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGTGCATCGCCAGAGAA
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCAGAGAA
* * *
43647 CCTGACCGGCGGCATTGGGGTTCCGACGATCAGGGGGGCCAGGGGGTGTGCGCACATGATGTGCG
131 CCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
43712 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
43777 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * * * *
43842 GGACACTTTTTTCAAACGGTCACAAAATCTTATACACTTTGACTTTTTTGCTGAATTTTTTTGTG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
**
43907 CATGCCAACAAAAATACAAGGATCACGTCTAGAAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAT
391 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAT
* * ** * * *
43972 TTTAAAAAATCCCGAACAGCAAAAAG-TTTGGAAAATCGTGAAAAATAGAAAATGAGTCGTGTTG
456 TTTAAAAAATCCCGAACCGTAAAAAGTTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
44036 CCATGAAACTTCACGTGAAGGCTTAAGGGACCCTTGTATGAATTTACAAGCCATAAAAATGGCAT
521 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
44101 TGGCACGCAGAAATATGAAGATGTGCCCAAATCCACCTACCACTCTATCGATCCACGGCTTGC-C
586 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
*
44165 ATCCCGTCTCTCTGGCCGGCGTA------G-T-GCCCGCCCGCTCGTTTCGTCGATTGGCTTAGG
651 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * *
44222 CATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGACTGCGGGTTGTGGCAGCAGGATTGGCAG
716 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACAG
** * ** * * * * * * ** *
44287 CACGTAGAGGGGGACCTGACCGATCCTCGACTTGCGAATCCCGCACCTTTAGCTTGTTGAGTGCC
781 CACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGTGCC
* * * *
44352 TGCACACTCGTTTCGTGGGTTGACTAAGGCATACGGAGTTCATTCCCAGTCTAAG
846 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * *
44407 CATACCGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGACAGCACATGCTAGGC
1 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCACATGCTGGGC
* ** * * * **
44472 TCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCAGGGCACCATCGTCAGAGCATCGCTGGAGAA
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCAGAGAA
* * * * * *
44537 CCTGACCGGCGGCATTAGGGTTCCGACGATC-GGGGGGCCAGGGGGAGTTCGCACATGATGTGTG
131 CCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
*
44601 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAATCTCGAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
44666 CCCCTTAAAGACCGTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * * * * *
44731 GGACATTTTTTTCAAATGGTGACAAAATCTTATACACTTCAACTTTTTTGCTGAATTTTTTTGTG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
44796 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAT
391 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAT
* * * * *
44861 TTTAAAAAATCCCGAACAGCAAAAAG-TTT-AGAAAATCGTGAAAAATAAAAAACGAGT-GTCTA
456 TTTAAAAAATCCCGAACCGTAAAAAGTTTTCA-AAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
44923 GCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
44988 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTACGGCTTGCG
585 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
45053 CATCCCGTCTCTTTGGTCAGCGTAGTTCCCGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGC
650 CATCCCGTCTCTCTGGCCGGCGTAG-T---GCCCGCTCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* ** ** * *
45118 TTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTAGACCAAGGGTTGTGGTAGCAGGATC
711 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATC
** * *
45183 TG-CAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGTTG
776 -GACAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * *
45247 AGTGCCCGCATGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
840 AGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
45308 ATCGGAATGG
Statistics
Matches: 4900, Mismatches: 1128, Indels: 673
0.73 0.17 0.10
Matches are distributed among these distances:
880 5 0.00
881 10 0.00
882 9 0.00
883 7 0.00
884 220 0.04
885 120 0.02
886 347 0.07
887 2 0.00
888 438 0.09
889 368 0.08
890 322 0.07
891 61 0.01
892 420 0.09
893 26 0.01
894 1 0.00
895 2 0.00
896 1 0.00
897 4 0.00
898 3 0.00
899 156 0.03
900 426 0.09
901 420 0.09
902 94 0.02
903 231 0.05
904 270 0.06
905 11 0.00
906 2 0.00
907 2 0.00
908 4 0.00
909 1 0.00
910 1 0.00
911 3 0.00
912 6 0.00
913 3 0.00
914 7 0.00
915 5 0.00
916 2 0.00
917 9 0.00
918 2 0.00
919 6 0.00
920 15 0.00
921 17 0.00
922 9 0.00
923 58 0.01
924 14 0.00
925 24 0.00
926 23 0.00
927 23 0.00
928 13 0.00
929 17 0.00
930 14 0.00
931 17 0.00
932 9 0.00
933 4 0.00
934 7 0.00
935 21 0.00
936 42 0.01
937 24 0.00
938 2 0.00
939 16 0.00
940 6 0.00
942 9 0.00
943 1 0.00
944 2 0.00
945 3 0.00
946 7 0.00
947 4 0.00
948 8 0.00
950 3 0.00
951 14 0.00
952 26 0.01
953 18 0.00
954 10 0.00
955 6 0.00
956 9 0.00
957 8 0.00
958 6 0.00
959 8 0.00
960 9 0.00
961 27 0.01
962 14 0.00
963 13 0.00
964 10 0.00
965 19 0.00
966 11 0.00
967 13 0.00
968 8 0.00
969 9 0.00
970 14 0.00
971 23 0.00
972 5 0.00
973 13 0.00
974 8 0.00
975 3 0.00
976 6 0.00
977 8 0.00
978 1 0.00
979 2 0.00
980 3 0.00
982 6 0.00
983 4 0.00
984 8 0.00
985 5 0.00
986 3 0.00
987 7 0.00
988 7 0.00
989 12 0.00
990 10 0.00
992 5 0.00
993 1 0.00
995 1 0.00
996 8 0.00
997 15 0.00
998 22 0.00
999 1 0.00
1000 8 0.00
1001 2 0.00
1002 1 0.00
1004 5 0.00
1005 2 0.00
1006 3 0.00
1007 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (900 bp):
CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCAGAGAA
CCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAT
TTTAAAAAATCCCGAACCGTAAAAAGTTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACAG
CACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGTGCC
CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
Found at i:41462 original size:26 final size:26
Alignment explanation
Indices: 41432--41487 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
41422 TCGGTTGGCT
41432 TAAGCATATAGAGTTCATTCCCAGTC
1 TAAGCATATAGAGTTCATTCCCAGTC
*
41458 TAAGCATATGGAGTTCATTCCCAGTC
1 TAAGCATATAGAGTTCATTCCCAGTC
41484 TAAG
1 TAAG
41488 ATCGGACCGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.30
Consensus pattern (26 bp):
TAAGCATATAGAGTTCATTCCCAGTC
Found at i:41906 original size:26 final size:26
Alignment explanation
Indices: 41870--41920 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
41860 TTGACTTAGG
*
41870 CATACGGAGTTCATTCCTAGTCTAAA
1 CATACGGAGTTCATTCCCAGTCTAAA
*
41896 CATATGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
41921 GATCAGACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAA
Found at i:43520 original size:26 final size:26
Alignment explanation
Indices: 43490--43542 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
43480 GTTGACTTAG
43490 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
43516 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
43542 G
1 G
43543 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:44416 original size:26 final size:26
Alignment explanation
Indices: 44375--44432 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
44365 CGTGGGTTGA
*
44375 CTAAGGCATACGGAGTTCATTCCCAGT
1 CTAA-GCATACCGAGTTCATTCCCAGT
44402 CTAAGCATACCGAGTTCATTCCCAGT
1 CTAAGCATACCGAGTTCATTCCCAGT
44428 CTAAG
1 CTAAG
44433 ATCGGACCGG
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 26 0.87
27 4 0.13
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
CTAAGCATACCGAGTTCATTCCCAGT
Found at i:45769 original size:26 final size:26
Alignment explanation
Indices: 45733--45783 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
45723 TTGACTTAGG
45733 CATACGGAGTTCA-TCCTCAGTCTAAA
1 CATACGGAGTTCATTCC-CAGTCTAAA
45759 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
45784 GATCGGACTG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAA
Found at i:46655 original size:26 final size:26
Alignment explanation
Indices: 46625--46677 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
46615 GTTGATTTAG
*
46625 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
46651 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
46677 G
1 G
46678 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:47546 original size:26 final size:26
Alignment explanation
Indices: 47510--47562 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
47500 GTTAACTTAG
47510 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
47536 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
47562 G
1 G
47563 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:47794 original size:885 final size:885
Alignment explanation
Indices: 45538--50118 Score: 5074
Period size: 893 Copynumber: 5.1 Consensus size: 885
45528 TATATTGGCC
* *
45538 GCCCGCACGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
1 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGACTAAGATC
* * * * * * * *
45603 AGACCAGACC-AAGGGT-TGCGATAGTAGGATCGACAGGACGCAGAAGGGGACCCCACCGATCCT
66 AGACCAGACCGAAGGTTATG-GCT-GCAAGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCT
* * ** **
45666 CGGCTTGCGCATCCCACTACTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
129 -GGCTTGAGCATCCCGCCCCTCTGGCCGGCAGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* **
45731 GGCATACGGAGTTCA-TCCTCAGTCTAAACATACGGAGTTCATTCCCAGTCTAAGATCGGACTGG
193 GGCATACGGAGTTCATTCC-CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG
* * * * * **
45795 ACCGAGGGTTACGGCAGCACATG-TGGGCTCTGTCATGTGCTGGTACCGCATTTTTCTTCACCGG
257 ACCAAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGG
* * * *
45859 GGCACCATCATCGGAGCATCATCAGAGAACCTGACCGGCGGCATTAAGGCTCCGGCGATCGGAGG
322 GGCACCATCACCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGAGGTTCCGGCGATCGGAGG
* * *
45924 GGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTAGGCCCTTATATTGGCCCCC
387 GGCCGGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGTCCTTATATTGGCCCCC
*
45989 TATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
452 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
*
46054 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAA
517 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * *
46119 ACTTCGAATTTTTAGCTGAATTTTTTTGTGCATACCAACAAAAATACAGGGATCACGA-CTACCA
582 ACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATCAC-ATCTACCA
* ** * * ** ** *
46183 AGTTTGGGACTGAAACTCCTGCCGAAAAAATTTTAAAAAATCTTGAACTGTAAAAAGTTTTAAAA
645 AGTTTGGGGCCAAAACTCCTTCC-AAAAAAATTTAAAAAATCCCGAACCATAAAAAGTTTCAAAA
* *
46248 ATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
709 ATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* *
46313 GTATAAATTTACAAGCAATAAAAATGGCATTGGCATGCAGAAATATAAGATGTGCCTAAACCCAC
774 GTATGAATTTACAAGCCATAAAAATGGCATTGGCA--C----A-ATAAGATGTGCCTAAACCCAC
* *
46378 CTACCA-ACCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGT
832 CTACCACA-CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGT
*
46432 GCCCGCCCGCCCGCTCGTTTCGTCGGTT-GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
1 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGACTAAGATC
* * * * ** * * * * * *
46496 AAACCACACTGAGGGTTGCGGCAGTAGGTTCGGCAGCATGCAGAGGGGGACCCGGCCGATCCTCG
66 AGACCAGACCGAAGGTTATGGCTGCAAGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCT-G
* * * * * *
46561 GCTT-ACGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGTACGCTCATTTCATGGGTTGATTTAG
130 GCTTGA-GCATCCCGCCCCTCTGGCCGGCAGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
46625 GCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCAGAC
194 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
* * * * *
46690 CATGGGTTACAGCAGCACATGCTGGGCTCGGGCATGTACTGGTGCCACAATTTTCTTCGCCGGGG
259 CAAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGG
** * * * * *
46755 CACCATCGTCGGAGCATCACCAGAGAACCTGACCGGCAGCATTGGGGTTCCGGCGATCGGGGGGG
324 CACCATCACCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGAGGTTCCGGCGATCGGAGGGG
* *
46820 CC-GGGGGGTGTGCGCACATGATGTGCGGTGGGTGCTGGTACTTGG-CTCTTATATTGGCCCCCT
389 CCGGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGTC-CTTATATTGGCCCCCT
*
46883 ATCCCTCATCAAACCTCGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
453 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* *
46948 GCCAGTAGCCATTCAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
518 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* *
47013 ATAT-GAGTTTTTAGCTGAATTATTTTGTGCATGCCAACAAAAATACAAGGATCACATCAACCAA
583 CT-TCGAGTTTTTAGCTGAATT-TTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAA
*
47077 GTTTGGGGCCGAAACTCCTTCCAAAAAAATTTAAAAAAATCCCGAACCATAAAAAGTTTCAAAAA
646 GTTTGGGGCCAAAACTCCTTCCAAAAAAATTT-AAAAAATCCCGAACCATAAAAAGTTTCAAAAA
* ** *
47142 TCGTGAAAAATGGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
710 TCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* *
47207 TATGAATTTACAAGCCATAAAAATGGCATTGGCAC-A-CAGATGTACCTAAACCCACCTACCACA
775 TATGAATTTACAAGCCATAAAAATGGCATTGGCACAATAAGATGTGCCTAAACCCACCTACCACA
* *
47270 CTATCGATCCATGGCTTGCGCATCCCGTCTCTCTAGCCGGCATAGT
840 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGT
* * *
47316 GCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGAGTAAGATC
1 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGACTAAGATC
* * * *
47381 GGACCGGACCGAAGGTTATGGCTGCAAGATCGGCAGCACGTAGAGGGGGACCCGATCGATCCCTG
66 AGACCAGACCGAAGGTTATGGCTGCAAGATCGGCAGCACGCAGAGGGGGACCCGACCGAT-CCTG
* *
47446 GCTTGAGCATCCCGCCCGTCTGGCCGGCAGAGCGCCCGCACGCTCGTTTCGTGGGTTAACTTAGG
130 GCTTGAGCATCCCGCCCCTCTGGCCGGCAGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
*
47511 CATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACC
195 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACC
* * *
47576 AAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTTGTCGGGGC
260 AAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGC
* *
47641 ACCATCACCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGAGGTTCTGGCGATC-GAGGGGC
325 ACCATCACCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGAGGTTCCGGCGATCGGAGGGGC
* *
47705 CGGGGGGGTGTACGCACATGATGTACGATGGGTGCTGGTACTTGGTGCTTATATTGGCCCCCTAT
390 CGGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGTCCTTATATTGGCCCCCTAT
* * *
47770 CCCTCATCAAAGCTCGAGAACTCACACCCCCTTAAAGAGCTTTTTAGATTTTACAGGTTTGCTGC
455 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * * *
47835 CAGTAACCATTAAAGTATTTGAAATGGGGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACT
520 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
*
47900 TCGAGGTTTTAGCTGAATTTTTTGTGCATGCCAA-AAAAATACAAGGATCACATCTACCAAGTTT
585 TCGAGTTTTTAGCTGAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTT
* * *
47964 GGGGCCAAAAATCCTTCCAAAAAAATTTAAAAAATCCCGAACAACAAAAAGTTTC-AAAATCATG
650 GGGGCCAAAACTCCTTCCAAAAAAATTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATG
*
48028 -AAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATCA
715 AAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
48092 ATTTACAAGCCAT-AAAATGGCATTGGCACACAGAAACATGAAGATGTGCCTAAACCCACCTACC
780 ATTTACAAGCCATAAAAATGGCATTGG--CAC----A-AT-AAGATGTGCCTAAACCCACCTACC
* * * * *
48156 ACCCTATCGATCCACGACTTGCG-AT-CCATCTCTCTGGCCGGGAGTAAT
837 ACACTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCA-TAGT
* ** * * *
48204 GCCCGCCC-TCTACTACG-TTCTGTTGGTTGGCTTAGGCATACGGAG-TCATTCCTA-ACTAACA
1 GCCCGCCCGCCCGCT-CGTTTC-GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGACTAAGA
** * * * * * ** *
48265 TTGGACCAGA-CTAAGGGTGT-GCAG-TAGATC-ATAGCAACGCAGAAGGGGACTCAC-ACCGGA
64 TCAGACCAGACCGAAGGTTATGGCTGCAAGATCGGCAGC-ACGCAGAGGGGGAC-C-CGACC-GA
* * * * * *
48325 -ACT-G-AT-AG-A-CCCG--TCT-TGGCCGAC-TA--GCCCGCAACGCTCGATTCGT--GTTGA
125 TCCTGGCTTGAGCATCCCGCCCCTCTGGCCGGCAGAGCGCCCGC-ACGCTCGTTTCGTGGGTTGA
*
48376 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGA-
189 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* * * * * * *
48440 CGGACCGAGGGTTACGGCAGAAAATTGCTGGGGTCGAGCACTGTGCTGGTGCCGCATTTTTCTTC
254 CAGACCAAGGGTTACGGCAGCACA-TGCTGGGCTCGGGCA-TGTGCTGGTGCCACATTTTTCTTC
* * * **
48505 GCTGGGGGCTACCATCTCCGCGAGCCATCACTCGGAGAACTTGCACCAACGGCATTG-GGTGT--
317 G-TCGGGGC-ACCATCACCG-GAG-CATCA-TCGGAGAACCTG-ACCGGCGGCATTGAGGT-TCC
** * * * *
48567 GATTGATCGGGAGGGGTCGCGGGGG-GTGCG-ACAT-AAGT-GGTAT-GGT-CTGGATACTTTGG
375 G-GCGATC-GGAGGGGCCGGGGGGGTGTGCGCACATGATGTACG-ATGGGTGCTGG-TAC-TTGG
* * * *
48626 CCCGTATATTTGGCCCCCTAT-CCTCATCAAACCTTGGAGAACCCACACCCCCTTAAAGAGCATT
435 TCCTTATA-TTGGCCCCCTATCCCTCATCAAACC-TCGAGAACTCACACCCCCTTAAAGAGCATT
48690 TGAGATTTTTAACAGGTTTGCTGCCCCGAAGTAGCCCATTAAAGTGTCTGAAAATGGGGACACTT
498 TGAGA-TTTT-ACAGGTTTGCTG--CC--AGTAG-CCATTAAAGTGTCTG-AAATGGGGACACTT
* * *
48755 TTTTCAAAATGCGTCAGCAAACATTTTGTGCACTTCGAGTTTTTGGCTGGAATTTTTGTGATTGC
555 TTTTC-AAATG-GTCA-CAAA-ATCTTGTACACTTCGAGTTTTTAGCT-GAATTTTT-TG--TGC
48820 ATGCCAACAAAAA-ACTAA-GATTCACATCT-CCAAG-TT--GGCC-AAACTTCCTTAACCAAAA
612 ATGCCAACAAAAATAC-AAGGA-TCACATCTACCAAGTTTGGGGCCAAAAC-TCCTT--CCAAAA
** * **
48878 TAGTTTTTAAAAAATCTCGAGTCATAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGT
672 -A-AATTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGT
*
48943 CTTGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
735 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
49008 GCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTT
800 GCATTGGC--AC----A-AT-AAGATGTGCCTAAACCCACCTACCACACTATCGATCCACGGCTT
*
49073 GTGCATCCCGTCTCTCTGGCCGGCATAGT
857 GCGCATCCCGTCTCTCTGGCCGGCATAGT
* * *
49102 GCCCACCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGAGTAAGATC
1 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGACTAAGATC
* * * *
49167 AGATCAGACCG-AGAGTTACGGCTGCAAGATCGGCAGCACGCAGAGGGAGACCCGATCGATCCCT
66 AGACCAGACCGAAG-GTTATGGCTGCAAGATCGGCAGCACGCAGAGGGGGACCCGACCGAT-CCT
* *
49231 GGCTTGAGCATCCCGCCCCTCTGGCCGGCAGAGTGCCCGCACGCTCGTTTCGTGGGTTAACTTAG
129 GGCTTGAGCATCCCGCCCCTCTGGCCGGCAGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
49296 GCATACGGA-TATCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGA
194 GCATACGGAGT-TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA
** * * *
49360 CCAAGGGTTGTGGCAGCACATGCTCGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTTGTCGGC
258 CCAAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGG-
* * * * *
49425 TGGCACCTATCACCGGAGGCCATCGTCGGAGAACCTGACCGATCGGCATTG-CGTTTCGACCGCA
322 -GGCACC-ATCACCGGA-G-CATCATCGGAGAACCTGACCG-GCGGCATTGAGGTTCCG-GCG-A
* * * *
49489 TCGGGGGGGCC-GAGGGGTGTGCGCATCATGGAATGTACGGATGTGTTGCTGGTAC-TGGTGCTT
380 TCGGAGGGGCCGGGGGGGTGTGCGCA-CAT-G-ATGTAC-GATG-GGTGCTGGTACTTGGTCCTT
49552 ATATTTTGGCCCCCGTATCCCGTCATACAATATCCTCTGAGAACTCTATCACCCCCTTAAAGCAG
440 ATA--TTGGCCCCC-TATCCC-TCAT-CAA-A-CCTC-GAGAACTC-A-CACCCCCTTAAAG-AG
* *
49617 CATTTTTAGGATTTCTTACAGGTTTGCTGCCAGTAACCATTAAAGTG-CTGCAAATGGCGGACAC
494 CA-TTTGA-GA-TT-TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG-AAATGG-GGACAC
*
49681 TTTTTTTCAAAAGGTCACATAAATCTTGTAACACTTTCGAGGTTTTTCAAGCTGAATTTTTTTGT
553 -TTTTTTCAAATGGTCACA-AAATCTTGT-ACAC-TTCGA-GTTTTT--AGCTGAA-TTTTTTGT
* * * *
49746 GCATGCCAAAATATAAATACAATGGCATCACGTCTACAAAGTTTTGGGTCCAAAACTCCTTTCC-
610 GCATGCCAACA-A-AAATACAA-GG-ATCACATCTACCAAG-TTTGGGGCCAAAACTCC-TTCCA
* * *** * *
49810 -GAAAATTTTAAAAATCGTTAGGCCGTAAAAAGTTTTCAAAATATCATGGAAAAATAGAAAAACG
669 AAAAAATTTAAAAAATCCCGA-ACCATAAAAAG-TTTCAAAA-ATCAT-GAAAAATA-AAAAAC-
* * * * *
49874 GAGTCTTTTCTTGCCATGGAAACCTTGATGTGAAGCCTTAA-GCACCATTTGGTATGAATTTATC
728 GAGTC--GTCTTGCCAT-GAAA-CTTCACGTGAAGGCTTAAGGGACCA-TT-GTATGAATTTA-C
* *
49938 AAGCCATAAAAATGGTATTGGCATGTAGAAACATGAAGATGTGCCTAAACCCACCTACCA-ACCT
786 AAGCCATAAAAATGGCATTGGC------ACA-AT-AAGATGTGCCTAAACCCACCTACCACA-CT
* * *
50002 ATCAATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTTGT
842 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGT
* * *
50046 GCCCGCCCGTCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
1 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGACTAAGATC
50111 AGACCAGA
66 AGACCAGA
50119 TTGAGGCTTG
Statistics
Matches: 3151, Mismatches: 353, Indels: 316
0.82 0.09 0.08
Matches are distributed among these distances:
870 18 0.01
871 79 0.03
872 29 0.01
873 18 0.01
874 14 0.00
875 17 0.01
876 31 0.01
877 65 0.02
878 24 0.01
879 39 0.01
880 75 0.02
881 14 0.00
882 29 0.01
883 78 0.02
884 136 0.04
885 527 0.17
886 21 0.01
887 34 0.01
888 40 0.01
889 67 0.02
890 17 0.01
891 3 0.00
892 21 0.01
893 600 0.19
894 172 0.05
895 11 0.00
896 75 0.02
897 67 0.02
898 37 0.01
899 29 0.01
900 14 0.00
901 6 0.00
902 6 0.00
903 19 0.01
904 4 0.00
905 1 0.00
906 2 0.00
907 1 0.00
908 4 0.00
910 2 0.00
911 7 0.00
912 1 0.00
913 19 0.01
914 60 0.02
915 105 0.03
916 22 0.01
917 3 0.00
920 3 0.00
921 10 0.00
922 11 0.00
923 8 0.00
924 6 0.00
925 4 0.00
926 11 0.00
927 20 0.01
928 46 0.01
929 19 0.01
930 23 0.01
931 16 0.01
932 23 0.01
933 32 0.01
934 11 0.00
935 7 0.00
936 10 0.00
937 12 0.00
938 11 0.00
940 8 0.00
941 9 0.00
942 17 0.01
943 11 0.00
944 158 0.05
948 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (885 bp):
GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGACTAAGATC
AGACCAGACCGAAGGTTATGGCTGCAAGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCTGG
CTTGAGCATCCCGCCCCTCTGGCCGGCAGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCA
AGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCA
CCATCACCGGAGCATCATCGGAGAACCTGACCGGCGGCATTGAGGTTCCGGCGATCGGAGGGGCC
GGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGTCCTTATATTGGCCCCCTATC
CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
CGAGTTTTTAGCTGAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTG
GGGCCAAAACTCCTTCCAAAAAAATTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGA
AAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
TTTACAAGCCATAAAAATGGCATTGGCACAATAAGATGTGCCTAAACCCACCTACCACACTATCG
ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGT
Found at i:48410 original size:26 final size:26
Alignment explanation
Indices: 48381--48433 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
48371 GTTGACTTAG
48381 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
48407 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
48433 G
1 G
48434 ATTGGACGGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:50982 original size:26 final size:26
Alignment explanation
Indices: 50952--51004 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
50942 GTTGACTTAG
50952 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
50978 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
51004 G
1 G
51005 ATCAGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Done.